Query 006191
Match_columns 657
No_of_seqs 209 out of 948
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 18:27:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006191.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006191hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dnz_A Probable RNA-binding pr 97.4 0.00095 3.3E-08 55.4 10.2 83 187-333 3-87 (95)
2 4fxv_A ELAV-like protein 1; RN 97.3 0.00053 1.8E-08 57.9 7.7 78 187-328 17-96 (99)
3 2jrs_A RNA-binding protein 39; 97.3 0.0012 4E-08 56.6 9.3 84 186-333 23-108 (108)
4 2lxi_A RNA-binding protein 10; 97.2 0.0005 1.7E-08 57.0 6.2 77 189-328 1-80 (91)
5 3s8s_A Histone-lysine N-methyl 97.2 0.00095 3.3E-08 57.5 8.1 80 187-330 4-85 (110)
6 2lkz_A RNA-binding protein 5; 97.2 0.00064 2.2E-08 56.9 6.7 81 186-328 6-92 (95)
7 3p5t_L Cleavage and polyadenyl 97.2 0.00068 2.3E-08 55.9 6.5 81 190-332 2-84 (90)
8 1x5s_A Cold-inducible RNA-bind 97.1 0.0019 6.5E-08 54.4 9.3 81 186-330 9-91 (102)
9 2dgs_A DAZ-associated protein 97.1 0.0033 1.1E-07 52.6 10.3 82 186-332 7-90 (99)
10 4a8x_A RNA-binding protein wit 97.1 0.00096 3.3E-08 54.4 6.6 82 187-331 2-85 (88)
11 3bs9_A Nucleolysin TIA-1 isofo 97.1 0.0014 4.7E-08 53.4 7.4 78 187-328 4-83 (87)
12 1x5u_A Splicing factor 3B subu 97.0 0.0028 9.5E-08 53.6 9.5 82 186-331 12-95 (105)
13 2dgp_A Bruno-like 4, RNA bindi 97.0 0.0034 1.2E-07 53.2 10.0 81 186-330 10-95 (106)
14 1whw_A Hypothetical protein ri 97.0 0.0023 7.8E-08 53.5 8.8 83 186-332 5-89 (99)
15 2dgv_A HnRNP M, heterogeneous 97.0 0.0026 8.8E-08 52.4 8.8 80 186-331 5-86 (92)
16 1x5t_A Splicing factor 3B subu 97.0 0.0021 7.3E-08 53.3 8.4 79 187-329 3-84 (96)
17 3mdf_A Peptidyl-prolyl CIS-tra 97.0 0.0015 5.3E-08 52.8 7.3 69 186-318 4-72 (85)
18 2cpz_A CUG triplet repeat RNA- 97.0 0.0025 8.4E-08 55.1 8.8 80 186-329 22-103 (115)
19 2fy1_A RNA-binding motif prote 97.0 0.0037 1.2E-07 54.2 9.9 77 187-328 5-83 (116)
20 2dnh_A Bruno-like 5, RNA bindi 97.0 0.0037 1.3E-07 52.9 9.7 79 186-329 12-95 (105)
21 2do4_A Squamous cell carcinoma 97.0 0.0024 8E-08 53.6 8.4 80 186-330 14-95 (100)
22 2x1f_A MRNA 3'-END-processing 97.0 0.0022 7.5E-08 53.4 8.0 78 189-330 2-81 (96)
23 2diu_A KIAA0430 protein; struc 97.0 0.0029 1E-07 52.3 8.4 41 296-336 47-89 (96)
24 3md1_A Nuclear and cytoplasmic 97.0 0.0028 9.4E-08 51.0 8.2 76 190-329 2-79 (83)
25 2cq3_A RNA-binding protein 9; 96.9 0.0054 1.9E-07 51.6 10.4 80 186-331 12-93 (103)
26 1fxl_A Paraneoplastic encephal 96.9 0.0031 1E-07 57.8 9.3 101 188-352 1-109 (167)
27 4f25_A Polyadenylate-binding p 96.9 0.0022 7.6E-08 55.5 7.7 75 188-328 4-80 (115)
28 2e5h_A Zinc finger CCHC-type a 96.9 0.0022 7.6E-08 53.0 7.4 68 186-317 13-80 (94)
29 2ywk_A Putative RNA-binding pr 96.9 0.0027 9.4E-08 52.6 7.8 78 186-328 13-92 (95)
30 2dgo_A Cytotoxic granule-assoc 96.9 0.0048 1.6E-07 53.2 9.5 69 186-318 12-80 (115)
31 2cph_A RNA binding motif prote 96.8 0.005 1.7E-07 52.2 9.4 83 186-331 12-97 (107)
32 2cqc_A Arginine/serine-rich sp 96.8 0.0028 9.6E-08 52.5 7.6 79 186-328 12-92 (95)
33 2dhg_A TRNA selenocysteine ass 96.8 0.0051 1.7E-07 51.9 9.2 78 186-328 6-87 (104)
34 2cq0_A Eukaryotic translation 96.8 0.004 1.4E-07 52.5 8.5 80 186-329 12-93 (103)
35 1p27_B RNA-binding protein 8A; 96.8 0.0049 1.7E-07 52.2 9.1 79 186-328 20-100 (106)
36 2dnm_A SRP46 splicing factor; 96.8 0.0036 1.2E-07 52.8 8.1 80 186-329 10-91 (103)
37 2div_A TRNA selenocysteine ass 96.8 0.0057 2E-07 51.0 9.3 80 186-329 6-92 (99)
38 1wi8_A EIF-4B, eukaryotic tran 96.8 0.0045 1.5E-07 52.3 8.6 81 186-331 12-94 (104)
39 2cqi_A Nucleolysin TIAR; RNA r 96.8 0.0059 2E-07 51.4 9.4 79 186-330 12-92 (103)
40 2cqd_A RNA-binding region cont 96.8 0.0042 1.4E-07 53.7 8.6 79 186-328 14-93 (116)
41 3ucg_A Polyadenylate-binding p 96.8 0.0038 1.3E-07 50.9 7.6 77 188-329 5-83 (89)
42 2cqg_A TDP-43, TAR DNA-binding 96.7 0.0041 1.4E-07 52.4 8.0 81 186-330 12-92 (103)
43 2la6_A RNA-binding protein FUS 96.7 0.0061 2.1E-07 51.0 8.9 79 186-328 10-98 (99)
44 2cqp_A RNA-binding protein 12; 96.7 0.0026 8.8E-08 53.1 6.5 83 186-332 12-96 (98)
45 2d9p_A Polyadenylate-binding p 96.7 0.0062 2.1E-07 51.3 8.9 78 186-329 12-91 (103)
46 1uaw_A Mouse-musashi-1; RNP-ty 96.7 0.0046 1.6E-07 48.9 7.6 75 190-328 1-76 (77)
47 3ulh_A THO complex subunit 4; 96.7 0.0048 1.6E-07 52.4 8.1 79 185-328 25-105 (107)
48 1oo0_B CG8781-PA, drosophila Y 96.7 0.0055 1.9E-07 52.3 8.5 79 186-328 23-103 (110)
49 2khc_A Testis-specific RNP-typ 96.7 0.0044 1.5E-07 53.7 7.9 69 186-318 37-105 (118)
50 2cqb_A Peptidyl-prolyl CIS-tra 96.7 0.0035 1.2E-07 52.7 7.0 80 186-329 9-90 (102)
51 1x4h_A RNA-binding protein 28; 96.7 0.0063 2.2E-07 51.9 8.8 80 186-329 12-99 (111)
52 1p1t_A Cleavage stimulation fa 96.7 0.0023 8E-08 54.0 5.9 81 187-331 6-88 (104)
53 2cpj_A Non-POU domain-containi 96.7 0.0068 2.3E-07 50.7 8.8 76 186-331 12-89 (99)
54 1b7f_A Protein (SXL-lethal pro 96.7 0.0045 1.5E-07 56.8 8.3 101 188-352 2-110 (168)
55 3s7r_A Heterogeneous nuclear r 96.6 0.0034 1.1E-07 51.1 6.4 39 186-229 8-46 (87)
56 1h2v_Z 20 kDa nuclear CAP bind 96.6 0.0058 2E-07 55.8 8.7 80 187-330 37-118 (156)
57 2a3j_A U1 small nuclear ribonu 96.6 0.0063 2.1E-07 53.7 8.5 88 187-338 27-117 (127)
58 1x4a_A Splicing factor, argini 96.6 0.011 3.6E-07 50.4 9.7 76 186-328 19-96 (109)
59 2kt5_A RNA and export factor-b 96.6 0.0087 3E-07 52.3 9.4 78 187-329 33-112 (124)
60 2err_A Ataxin-2-binding protei 96.6 0.0056 1.9E-07 52.3 7.9 77 186-328 26-104 (109)
61 2ki2_A SS-DNA binding protein 96.6 0.0035 1.2E-07 51.4 6.3 77 190-331 2-80 (90)
62 2dgw_A Probable RNA-binding pr 96.6 0.0058 2E-07 50.2 7.6 76 186-328 7-84 (91)
63 2kxn_B Transformer-2 protein h 96.6 0.0084 2.9E-07 53.0 9.1 78 187-328 44-123 (129)
64 2dng_A Eukaryotic translation 96.6 0.0081 2.8E-07 50.6 8.7 79 186-330 12-92 (103)
65 3lqv_A PRE-mRNA branch site pr 96.6 0.0078 2.7E-07 51.8 8.7 95 187-350 6-102 (115)
66 3ex7_B RNA-binding protein 8A; 96.6 0.0074 2.5E-07 52.9 8.7 79 186-328 19-99 (126)
67 2cpf_A RNA binding motif prote 96.6 0.0054 1.8E-07 51.1 7.3 81 187-328 3-85 (98)
68 1wg5_A Heterogeneous nuclear r 96.6 0.0085 2.9E-07 50.7 8.6 85 186-337 12-99 (104)
69 1s79_A Lupus LA protein; RRM, 96.5 0.0057 1.9E-07 51.8 7.3 63 186-313 8-70 (103)
70 2cpe_A RNA-binding protein EWS 96.5 0.0095 3.2E-07 51.0 8.8 36 294-329 64-101 (113)
71 2cpd_A Apobec-1 stimulating pr 96.5 0.012 4E-07 49.2 9.1 73 186-328 12-86 (99)
72 2do0_A HnRNP M, heterogeneous 96.5 0.0088 3E-07 51.3 8.5 67 186-317 12-78 (114)
73 2ek1_A RNA-binding protein 12; 96.5 0.004 1.4E-07 51.5 6.0 79 186-328 12-92 (95)
74 2mss_A Protein (musashi1); RNA 96.5 0.0063 2.2E-07 47.9 6.9 32 191-227 1-32 (75)
75 2dnq_A RNA-binding protein 4B; 96.5 0.016 5.3E-07 47.4 9.5 72 186-329 5-78 (90)
76 1x4e_A RNA binding motif, sing 96.5 0.0078 2.7E-07 48.6 7.5 67 187-317 3-69 (85)
77 2e44_A Insulin-like growth fac 96.5 0.015 5.1E-07 48.1 9.4 77 187-331 13-92 (96)
78 1sjq_A Polypyrimidine tract-bi 96.5 0.011 3.6E-07 50.3 8.5 74 186-329 13-90 (105)
79 3r27_A HnRNP L, heterogeneous 96.4 0.0093 3.2E-07 50.2 8.0 74 185-328 17-94 (100)
80 2ku7_A MLL1 PHD3-CYP33 RRM chi 96.4 0.0073 2.5E-07 53.8 7.9 67 187-317 61-127 (140)
81 2lmi_A GRSF-1, G-rich sequence 96.4 0.01 3.4E-07 50.5 8.4 79 186-328 8-89 (107)
82 2j76_E EIF-4B, EIF4B, eukaryot 96.4 0.0074 2.5E-07 50.6 7.4 80 186-330 16-97 (100)
83 2ytc_A PRE-mRNA-splicing facto 96.4 0.01 3.6E-07 47.8 8.0 36 186-226 9-44 (85)
84 1wex_A Hypothetical protein (r 96.4 0.015 5.1E-07 49.3 9.3 74 186-329 12-89 (104)
85 2hgl_A HNRPF protein, heteroge 96.4 0.0026 8.7E-08 57.0 4.6 78 187-328 42-122 (136)
86 1x5o_A RNA binding motif, sing 96.4 0.015 5.2E-07 49.8 9.3 68 186-318 22-89 (114)
87 3nmr_A Cugbp ELAV-like family 96.4 0.011 3.8E-07 54.4 9.0 103 188-352 2-116 (175)
88 3md3_A Nuclear and cytoplasmic 96.4 0.012 4.2E-07 53.5 9.2 96 190-350 1-106 (166)
89 2cpi_A CCR4-NOT transcription 96.3 0.0069 2.4E-07 51.9 6.9 83 186-329 12-99 (111)
90 3ns6_A Eukaryotic translation 96.3 0.0041 1.4E-07 52.3 5.3 80 188-328 5-90 (100)
91 1x4g_A Nucleolysin TIAR; struc 96.3 0.016 5.4E-07 49.4 9.1 75 186-330 22-98 (109)
92 1iqt_A AUF1, heterogeneous nuc 96.3 0.0045 1.5E-07 48.7 5.2 60 191-314 1-60 (75)
93 1x4f_A Matrin 3; structural ge 96.3 0.013 4.6E-07 50.3 8.5 80 187-336 23-107 (112)
94 2dnp_A RNA-binding protein 14; 96.3 0.015 5.1E-07 47.5 8.5 73 185-329 5-79 (90)
95 2dgx_A KIAA0430 protein; RRM d 96.3 0.016 5.3E-07 48.2 8.6 78 185-329 5-88 (96)
96 1why_A Hypothetical protein ri 96.3 0.017 5.9E-07 47.9 8.8 74 186-329 14-91 (97)
97 2dgt_A RNA-binding protein 30; 96.3 0.018 6.3E-07 47.2 8.9 72 185-328 6-79 (92)
98 2f3j_A RNA and export factor b 96.3 0.014 4.7E-07 54.7 9.0 85 187-336 86-172 (177)
99 1wez_A HnRNP H', FTP-3, hetero 96.3 0.0084 2.9E-07 50.6 6.8 77 186-329 12-90 (102)
100 3d2w_A TAR DNA-binding protein 96.2 0.0056 1.9E-07 50.3 5.4 37 185-226 7-43 (89)
101 2nlw_A Eukaryotic translation 96.2 0.017 6E-07 48.8 8.7 81 188-331 14-100 (105)
102 2cq1_A PTB-like protein L; RRM 96.2 0.016 5.6E-07 48.8 8.3 74 186-329 12-89 (101)
103 1x4c_A Splicing factor, argini 96.2 0.015 5.1E-07 49.5 8.2 73 186-329 12-91 (108)
104 2dh8_A DAZ-associated protein 96.2 0.0076 2.6E-07 50.9 6.3 65 186-314 13-77 (105)
105 1wf0_A TDP-43, TAR DNA-binding 96.2 0.0046 1.6E-07 50.5 4.7 34 188-226 4-37 (88)
106 1u6f_A Tcubp1, RNA-binding pro 96.2 0.014 4.9E-07 52.0 8.4 77 188-328 41-119 (139)
107 2dnl_A Cytoplasmic polyadenyla 96.2 0.0061 2.1E-07 52.5 5.5 31 187-222 6-36 (114)
108 2dha_A FLJ20171 protein; RRM d 96.1 0.0068 2.3E-07 53.2 5.8 65 187-314 21-87 (123)
109 4f02_A Polyadenylate-binding p 96.1 0.016 5.4E-07 55.8 9.1 101 188-352 14-124 (213)
110 2dis_A Unnamed protein product 96.1 0.021 7E-07 48.5 8.8 80 186-328 5-89 (109)
111 1whx_A Hypothetical protein ri 96.1 0.0099 3.4E-07 51.0 6.7 74 187-330 8-83 (111)
112 2i2y_A Fusion protein consists 96.1 0.031 1.1E-06 50.5 10.4 77 186-331 70-148 (150)
113 2ad9_A Polypyrimidine tract-bi 96.1 0.012 4E-07 51.3 7.1 74 186-329 28-105 (119)
114 2krb_A Eukaryotic translation 96.1 0.019 6.6E-07 45.8 7.9 67 189-318 1-70 (81)
115 2kvi_A Nuclear polyadenylated 96.1 0.016 5.6E-07 48.0 7.7 72 186-329 7-81 (96)
116 2e5j_A Methenyltetrahydrofolat 96.1 0.031 1.1E-06 46.3 9.4 37 295-331 56-94 (97)
117 2dgu_A Heterogeneous nuclear r 96.1 0.018 6.3E-07 48.3 8.0 71 187-329 9-81 (103)
118 2jvr_A Nucleolar protein 3; RN 96.1 0.012 4.1E-07 50.6 6.9 77 186-329 25-103 (111)
119 1wg1_A KIAA1579 protein, homol 96.1 0.0073 2.5E-07 49.3 5.3 37 295-331 40-78 (88)
120 2lea_A Serine/arginine-rich sp 96.1 0.011 3.8E-07 52.6 7.0 77 188-328 46-124 (135)
121 1wf1_A RNA-binding protein RAL 96.1 0.017 5.8E-07 49.2 7.9 37 295-331 62-100 (110)
122 2pe8_A Splicing factor 45; RRM 96.0 0.022 7.6E-07 48.3 8.4 84 187-330 6-93 (105)
123 2qfj_A FBP-interacting repress 96.0 0.028 9.7E-07 53.7 10.3 100 188-351 27-145 (216)
124 1nu4_A U1A RNA binding domain; 96.0 0.0091 3.1E-07 49.5 5.8 40 295-334 51-92 (97)
125 2jwn_A Embryonic polyadenylate 96.0 0.015 5.1E-07 50.7 7.5 76 189-329 36-113 (124)
126 3beg_B Splicing factor, argini 96.0 0.022 7.6E-07 49.1 8.4 61 187-318 14-74 (115)
127 2cpy_A RNA-binding protein 12; 96.0 0.012 4.1E-07 50.6 6.7 64 186-314 12-76 (114)
128 2dnn_A RNA-binding protein 12; 96.0 0.013 4.3E-07 50.3 6.6 36 188-229 15-50 (109)
129 1x4b_A Heterogeneous nuclear r 96.0 0.018 6.2E-07 49.6 7.7 76 189-329 27-104 (116)
130 2kn4_A Immunoglobulin G-bindin 96.0 0.02 6.7E-07 52.3 8.3 78 187-328 68-147 (158)
131 1x4d_A Matrin 3; structural ge 95.9 0.015 5E-07 49.2 6.7 74 187-330 13-91 (102)
132 1l3k_A Heterogeneous nuclear r 95.9 0.024 8.3E-07 53.3 9.0 103 186-352 10-125 (196)
133 3n9u_C Cleavage and polyadenyl 95.9 0.019 6.6E-07 52.5 8.0 79 188-328 54-134 (156)
134 2rs2_A Musashi-1, RNA-binding 95.9 0.016 5.4E-07 49.5 6.8 78 187-328 23-101 (109)
135 2fc8_A NCL protein; structure 95.9 0.021 7.1E-07 47.8 7.5 37 295-331 54-92 (102)
136 2la4_A Nuclear and cytoplasmic 95.9 0.028 9.6E-07 46.9 8.2 73 186-328 24-98 (101)
137 3sde_A Paraspeckle component 1 95.9 0.033 1.1E-06 55.4 10.2 96 187-352 20-117 (261)
138 2hvz_A Splicing factor, argini 95.8 0.032 1.1E-06 46.5 8.6 69 191-328 2-72 (101)
139 2cpx_A Hypothetical protein FL 95.8 0.018 6.3E-07 49.3 7.1 36 294-329 66-103 (115)
140 2db1_A Heterogeneous nuclear r 95.8 0.013 4.5E-07 50.8 6.2 64 187-313 15-79 (118)
141 2xnq_A Nuclear polyadenylated 95.8 0.04 1.4E-06 45.8 8.9 72 186-329 19-93 (97)
142 1rk8_A CG8781-PA, CG8781-PA pr 95.8 0.028 9.7E-07 51.7 8.6 79 186-328 69-149 (165)
143 2m2b_A RNA-binding protein 10; 95.7 0.027 9.1E-07 49.8 8.0 77 187-328 21-105 (131)
144 2cq4_A RNA binding motif prote 95.7 0.011 3.9E-07 50.7 5.2 35 189-228 25-59 (114)
145 2hgn_A Heterogeneous nuclear r 95.7 0.01 3.5E-07 53.2 4.9 78 187-331 44-123 (139)
146 2jvo_A Nucleolar protein 3; nu 95.6 0.042 1.4E-06 46.7 8.3 71 186-328 28-100 (108)
147 2cjk_A Nuclear polyadenylated 95.6 0.011 3.6E-07 54.2 4.8 99 189-351 3-107 (167)
148 2wbr_A GW182, gawky, LD47780P; 95.5 0.061 2.1E-06 43.9 8.5 73 186-328 4-78 (89)
149 1wel_A RNA-binding protein 12; 95.5 0.014 4.7E-07 51.0 5.0 77 187-328 23-101 (124)
150 2fc9_A NCL protein; structure 95.5 0.031 1.1E-06 46.6 7.1 35 294-328 52-88 (101)
151 2e5g_A U6 snRNA-specific termi 95.5 0.061 2.1E-06 44.2 8.8 33 187-224 6-38 (94)
152 1fj7_A Nucleolin RBD1, protein 95.5 0.019 6.5E-07 48.0 5.7 35 294-329 57-93 (101)
153 3md3_A Nuclear and cytoplasmic 95.4 0.044 1.5E-06 49.7 8.6 79 186-328 84-164 (166)
154 2hgm_A HNRPF protein, heteroge 95.4 0.025 8.4E-07 49.8 6.4 62 187-314 40-103 (126)
155 3smz_A Protein raver-1, ribonu 95.4 0.042 1.4E-06 55.2 9.0 94 188-352 21-116 (284)
156 3nmr_A Cugbp ELAV-like family 95.4 0.05 1.7E-06 49.9 8.8 67 187-318 93-159 (175)
157 1b7f_A Protein (SXL-lethal pro 95.3 0.048 1.6E-06 49.7 8.5 79 186-328 86-168 (168)
158 2qfj_A FBP-interacting repress 95.3 0.047 1.6E-06 52.2 8.6 77 188-328 124-202 (216)
159 2adc_A Polypyrimidine tract-bi 95.3 0.075 2.6E-06 51.6 10.2 37 186-227 31-68 (229)
160 2xs2_A Deleted in azoospermia- 95.2 0.015 5.2E-07 48.7 4.3 39 186-229 6-44 (102)
161 2cqh_A IGF-II mRNA-binding pro 95.1 0.052 1.8E-06 44.5 7.1 35 295-329 44-81 (93)
162 3q2s_C Cleavage and polyadenyl 95.1 0.034 1.2E-06 54.3 6.9 80 188-329 67-148 (229)
163 1qm9_A Polypyrimidine tract-bi 94.9 0.072 2.4E-06 50.2 8.6 34 188-226 2-36 (198)
164 3tyt_A Heterogeneous nuclear r 94.9 0.085 2.9E-06 50.5 9.1 35 187-226 2-37 (205)
165 1fxl_A Paraneoplastic encephal 94.9 0.077 2.6E-06 48.1 8.5 69 187-319 86-154 (167)
166 2cjk_A Nuclear polyadenylated 94.9 0.059 2E-06 49.1 7.6 75 189-328 87-163 (167)
167 3ue2_A Poly(U)-binding-splicin 94.8 0.036 1.2E-06 48.1 5.5 86 188-330 19-108 (118)
168 2voo_A Lupus LA protein; RNA-b 94.8 0.042 1.4E-06 52.1 6.4 36 189-229 109-144 (193)
169 2g4b_A Splicing factor U2AF 65 94.6 0.06 2.1E-06 49.3 7.1 78 187-328 92-171 (172)
170 1fjc_A Nucleolin RBD2, protein 94.3 0.061 2.1E-06 44.3 5.7 35 295-329 53-89 (96)
171 2lcw_A RNA-binding protein FUS 93.2 0.0084 2.9E-07 51.7 0.0 36 294-329 56-93 (116)
172 2ghp_A U4/U6 snRNA-associated 94.2 0.15 5.2E-06 51.2 9.4 99 187-353 39-139 (292)
173 1l3k_A Heterogeneous nuclear r 94.1 0.1 3.4E-06 48.9 7.5 79 187-330 102-182 (196)
174 1sjr_A Polypyrimidine tract-bi 94.0 0.21 7.2E-06 45.8 9.1 72 190-329 47-122 (164)
175 4f02_A Polyadenylate-binding p 94.0 0.091 3.1E-06 50.4 7.0 74 189-328 103-178 (213)
176 2yh0_A Splicing factor U2AF 65 93.9 0.13 4.5E-06 48.2 7.8 78 187-328 112-191 (198)
177 3pgw_S U1-70K; protein-RNA com 93.8 0.14 4.6E-06 55.1 8.6 84 189-336 102-187 (437)
178 2hzc_A Splicing factor U2AF 65 93.5 0.21 7.2E-06 40.0 7.4 26 188-216 5-30 (87)
179 2g4b_A Splicing factor U2AF 65 93.4 0.39 1.3E-05 43.6 10.1 57 295-352 51-115 (172)
180 3pgw_A U1-A; protein-RNA compl 93.2 0.43 1.5E-05 47.6 10.8 39 186-226 6-45 (282)
181 3smz_A Protein raver-1, ribonu 93.0 0.18 6E-06 50.5 7.5 81 187-332 182-265 (284)
182 3u1l_A PRE-mRNA-splicing facto 92.9 0.27 9.3E-06 48.1 8.4 66 186-318 131-202 (240)
183 3egn_A RNA-binding protein 40; 92.8 0.17 5.8E-06 45.1 6.4 35 294-328 91-127 (143)
184 3sde_A Paraspeckle component 1 92.8 0.23 7.9E-06 49.2 7.9 76 188-328 95-176 (261)
185 2cq2_A Hypothetical protein LO 92.7 0.31 1.1E-05 41.8 7.4 23 296-318 64-86 (114)
186 2dit_A HIV TAT specific factor 92.5 0.39 1.3E-05 40.8 7.9 45 294-338 63-109 (112)
187 1jmt_A Splicing factor U2AF 35 92.3 0.31 1.1E-05 41.0 6.9 36 294-329 67-104 (104)
188 1qm9_A Polypyrimidine tract-bi 92.0 0.35 1.2E-05 45.3 7.7 73 187-328 118-194 (198)
189 3tyt_A Heterogeneous nuclear r 91.8 0.32 1.1E-05 46.4 7.2 67 186-318 120-188 (205)
190 1fje_B Nucleolin RBD12, protei 91.8 0.2 6.8E-06 46.0 5.6 58 294-352 53-120 (175)
191 2yh0_A Splicing factor U2AF 65 91.7 0.49 1.7E-05 44.1 8.5 26 188-216 3-28 (198)
192 2e5i_A Heterogeneous nuclear r 91.7 0.89 3.1E-05 39.5 9.3 37 296-332 62-103 (124)
193 3pgw_A U1-A; protein-RNA compl 91.6 0.51 1.7E-05 47.0 8.8 64 186-318 204-267 (282)
194 2adc_A Polypyrimidine tract-bi 91.2 0.61 2.1E-05 45.0 8.6 74 187-329 149-226 (229)
195 3zzy_A Polypyrimidine tract-bi 90.2 0.7 2.4E-05 40.6 7.2 73 190-330 29-105 (130)
196 1fje_B Nucleolin RBD12, protei 90.2 0.51 1.7E-05 43.1 6.7 36 294-329 135-172 (175)
197 2ghp_A U4/U6 snRNA-associated 89.5 0.61 2.1E-05 46.7 7.3 66 188-318 116-182 (292)
198 3s6e_A RNA-binding protein 39; 88.6 0.45 1.5E-05 40.8 4.7 35 295-329 55-91 (114)
199 2dhx_A Poly (ADP-ribose) polym 87.1 4.4 0.00015 33.7 9.4 45 296-340 48-95 (104)
200 3v4m_A Splicing factor U2AF 65 87.0 0.96 3.3E-05 38.0 5.7 36 294-329 58-95 (105)
201 2d9o_A DNAJ (HSP40) homolog, s 86.8 0.94 3.2E-05 37.7 5.5 35 295-329 54-88 (100)
202 1x5p_A Negative elongation fac 78.7 1.8 6.3E-05 35.2 4.1 35 295-329 49-85 (97)
203 2bz2_A Negative elongation fac 74.1 4 0.00014 34.9 5.1 36 295-330 73-110 (121)
204 3he5_A Synzip1; heterodimeric 69.8 2.5 8.5E-05 28.1 2.0 21 263-283 29-49 (49)
205 2j8a_A Histone-lysine N-methyl 51.8 13 0.00045 32.4 4.0 37 190-231 3-43 (136)
206 2dnr_A Synaptojanin-1; RRM dom 46.2 11 0.00036 30.7 2.4 32 296-328 50-83 (91)
207 2kn4_A Immunoglobulin G-bindin 40.8 38 0.0013 29.7 5.6 61 293-353 11-92 (158)
208 3dxb_A Thioredoxin N-terminall 40.4 19 0.00065 34.0 3.7 36 295-330 175-212 (222)
209 3tht_A Alkylated DNA repair pr 33.3 27 0.00092 35.8 3.6 22 296-317 57-78 (345)
210 3v4m_A Splicing factor U2AF 65 32.2 32 0.0011 28.3 3.4 41 188-230 4-51 (105)
211 2dit_A HIV TAT specific factor 29.6 49 0.0017 27.3 4.1 39 186-226 12-58 (112)
212 1ufw_A Synaptojanin 2; RNP dom 28.5 31 0.0011 28.1 2.4 22 295-317 58-79 (95)
213 1ufw_A Synaptojanin 2; RNP dom 27.2 67 0.0023 26.1 4.2 45 184-230 10-60 (95)
214 2lf0_A Uncharacterized protein 27.1 1.9E+02 0.0066 24.2 7.0 49 232-288 11-59 (123)
215 3nmd_A CGMP dependent protein 26.9 1.7E+02 0.0058 22.4 6.1 25 266-290 41-65 (72)
216 3twe_A Alpha4H; unknown functi 26.8 85 0.0029 18.3 3.3 18 271-288 7-24 (27)
217 2rdd_B UPF0092 membrane protei 23.3 40 0.0014 22.2 1.8 18 553-570 4-21 (37)
218 1wey_A Calcipressin 1; structu 22.7 1.2E+02 0.004 25.1 4.9 42 191-232 7-57 (104)
219 2dnr_A Synaptojanin-1; RRM dom 22.4 1E+02 0.0035 24.8 4.4 44 185-230 3-51 (91)
220 1x5p_A Negative elongation fac 21.5 1E+02 0.0036 24.2 4.5 34 187-227 13-46 (97)
No 1
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.40 E-value=0.00095 Score=55.43 Aligned_cols=83 Identities=13% Similarity=0.133 Sum_probs=60.7
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCh
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~ 266 (657)
+..+||.|.|||.+.+ .++|+++|+++ |.|.++.+.+|.
T Consensus 3 ~~~~~l~v~nlp~~~t---~~~l~~~f~~~--G~v~~v~i~~~~------------------------------------ 41 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNIT---EDMLRGIFEPF--GKIDNIVLMKDS------------------------------------ 41 (95)
T ss_dssp SCCCEEEEESCCTTCC---HHHHHHHHTTT--SCEEEEEEECCS------------------------------------
T ss_pred CCCcEEEEeCCCCCCC---HHHHHHHHHhc--CCEeEEEEeecC------------------------------------
Confidence 4568999999999766 47899999987 567777765531
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCCCCC
Q 006191 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEPND 333 (657)
Q Consensus 267 i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P~D 333 (657)
...+..+.|||+|++.++|..|.+.++.. +...++|+.|.++.+
T Consensus 42 -----------------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 87 (95)
T 2dnz_A 42 -----------------------DTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLD 87 (95)
T ss_dssp -----------------------SSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCC
T ss_pred -----------------------CCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccC
Confidence 00123689999999999999999876554 345677777665443
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=97.33 E-value=0.00053 Score=57.86 Aligned_cols=78 Identities=18% Similarity=0.247 Sum_probs=58.2
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCh
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~ 266 (657)
.+..+|.|.|||.+.++ ++|+++|+++ |.|.++.+.+|.
T Consensus 17 ~~gt~lfV~nLp~~~te---~~L~~~F~~~--G~I~~v~i~~d~------------------------------------ 55 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQ---DELRSLFSSI--GEVESAKLIRDK------------------------------------ 55 (99)
T ss_dssp CCCSEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEECS------------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEeEeeecC------------------------------------
Confidence 34568999999997764 7899999987 678888776641
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccC
Q 006191 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (657)
Q Consensus 267 i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 328 (657)
...++.|.|||+|++.++|..|.+.++.. +...++|+.|
T Consensus 56 -----------------------~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 56 -----------------------VAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp -----------------------SSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred -----------------------CCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 00123589999999999999999877543 2345667766
No 3
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=97.26 E-value=0.0012 Score=56.65 Aligned_cols=84 Identities=14% Similarity=0.181 Sum_probs=63.0
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
.+..++|.|.|||.+.+ .+.|+++|+++ |.+.++.+.+|..
T Consensus 23 ~~~~~~l~V~nLp~~~t---e~~l~~~F~~~--G~i~~v~i~~~~~---------------------------------- 63 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNIT---EDMLRGIFEPF--GRIESIQLMMDSE---------------------------------- 63 (108)
T ss_dssp CSSCEEEEEECCCSSCC---HHHHHHHHTTT--SCEEEEEEEEETT----------------------------------
T ss_pred CCCCCEEEEeCCCCCCC---HHHHHHHHHhc--CCeEEEEEEEcCC----------------------------------
Confidence 45679999999999766 47899999987 5677777765310
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCCCCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEPND 333 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P~D 333 (657)
..++.|.|||+|.+.++|..|.+.+... ....+.|+.|-+.+|
T Consensus 64 -------------------------~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k~d 108 (108)
T 2jrs_A 64 -------------------------TGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTD 108 (108)
T ss_dssp -------------------------TTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSSCC
T ss_pred -------------------------CCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccCCC
Confidence 0113589999999999999999877654 346678888876655
No 4
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=97.21 E-value=0.0005 Score=56.96 Aligned_cols=77 Identities=14% Similarity=0.143 Sum_probs=53.1
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChHH
Q 006191 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVD 268 (657)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i~ 268 (657)
+.+|.|+|||.+.++ ++|+++|+++.+ .|.++.+++|-
T Consensus 1 S~~i~v~nLp~~~te---~~l~~~F~~~G~-~v~~v~i~~d~-------------------------------------- 38 (91)
T 2lxi_A 1 SNIVMLRMLPQAATE---DDIRGQLQSHGV-QAREVRLMRNK-------------------------------------- 38 (91)
T ss_dssp CCEEEEETCCSSCCH---HHHHHHHHHHTC-CCSBCCSSSCS--------------------------------------
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHHhCC-EeEEEEEEecC--------------------------------------
Confidence 368999999998764 789999998831 45555443320
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC---CCCCceeccC
Q 006191 269 HYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST---NPTDWLLEQA 328 (657)
Q Consensus 269 ~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~---~~~~~~v~~A 328 (657)
...++.|.|||+|.+.++|..|.+...+. +...+.|+.|
T Consensus 39 ---------------------~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 39 ---------------------SSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp ---------------------SSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred ---------------------CCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 01224689999999999999998865322 3455666654
No 5
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=97.20 E-value=0.00095 Score=57.47 Aligned_cols=80 Identities=13% Similarity=0.040 Sum_probs=61.3
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCh
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~ 266 (657)
+..+||.|.|||.+.+ .+.|+++|+++ |.|.++.+.+|..
T Consensus 4 ~p~~~lfV~nL~~~~t---e~~L~~~F~~~--G~i~~v~i~~d~~----------------------------------- 43 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVR---ETFLKDMCRKY--GEVEEVEILLHPR----------------------------------- 43 (110)
T ss_dssp SCCCEEEEESCCTTCC---HHHHHHHHTTT--SCEEEEEEEECTT-----------------------------------
T ss_pred CCCcEEEEECCCCCCC---HHHHHHHHHhc--CCeeEEEEEECCC-----------------------------------
Confidence 4568999999998776 47899999987 6788888877520
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCC
Q 006191 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPE 330 (657)
Q Consensus 267 i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~ 330 (657)
..++.|.|||+|++.++|+.|.+.+... ....+.|+.|+.
T Consensus 44 ------------------------tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 44 ------------------------TRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIK 85 (110)
T ss_dssp ------------------------TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECST
T ss_pred ------------------------CCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 0123689999999999999999987654 345667777753
No 6
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=97.19 E-value=0.00064 Score=56.91 Aligned_cols=81 Identities=17% Similarity=0.200 Sum_probs=57.7
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
.....||.|+|||.+.++ +.|+++|+++.+-.+.+|.+++|-
T Consensus 6 ~~~m~tlfV~nL~~~~te---e~L~~~F~~~G~i~v~~v~i~~d~----------------------------------- 47 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVV---DSIMTALSPYASLAVNNIRLIKDK----------------------------------- 47 (95)
T ss_dssp SCCCCEEEEESCCTTCCH---HHHHHHSTTTCCCCGGGEECCCCS-----------------------------------
T ss_pred CCccCEEEEeCCCCcCCH---HHHHHHHHhhCCccEEEEEEEecC-----------------------------------
Confidence 345679999999998764 889999998854355566554431
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC------CCCceeccC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN------PTDWLLEQA 328 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~------~~~~~v~~A 328 (657)
...++.|.|||+|.+.++|..|.+.++... ...+.|+.|
T Consensus 48 ------------------------~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~A 92 (95)
T 2lkz_A 48 ------------------------QTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFA 92 (95)
T ss_dssp ------------------------SSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEEC
T ss_pred ------------------------CCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEc
Confidence 011246899999999999999999876543 234556655
No 7
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=97.17 E-value=0.00068 Score=55.89 Aligned_cols=81 Identities=5% Similarity=0.052 Sum_probs=54.7
Q ss_pred eEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChHHH
Q 006191 190 FTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVDH 269 (657)
Q Consensus 190 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i~~ 269 (657)
+||.|.|||.+.+ .++|+++|+++.+..+.++.+.+|-
T Consensus 2 ~~l~V~nL~~~~t---~~~l~~~F~~~G~~~v~~v~i~~~~--------------------------------------- 39 (90)
T 3p5t_L 2 IALYIGNLTWWTT---DEDLTEAVHSLGVNDILEIKFFENR--------------------------------------- 39 (90)
T ss_dssp --CEEESCCTTCC---HHHHHHHHHTTTCCCCCCEEEEECT---------------------------------------
T ss_pred eEEEEeCCCCCCC---HHHHHHHHHHhCCCceEEEEEEecC---------------------------------------
Confidence 6899999999766 4789999998842267777776541
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCCCC
Q 006191 270 YGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEPN 332 (657)
Q Consensus 270 ~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P~ 332 (657)
...++.|.|||+|++.++|..|.+.+... +...+.|+.|.+|.
T Consensus 40 --------------------~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~ 84 (90)
T 3p5t_L 40 --------------------ANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLE 84 (90)
T ss_dssp --------------------TTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC----
T ss_pred --------------------CCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCc
Confidence 00123689999999999999999877654 34567777665544
No 8
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.15 E-value=0.0019 Score=54.40 Aligned_cols=81 Identities=14% Similarity=0.210 Sum_probs=58.7
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....+||.|.|||.+.+ .++|+++|+++ |.|.++.+.+|-
T Consensus 9 ~~~~~~l~v~nLp~~~t---~~~l~~~f~~~--G~i~~v~i~~~~----------------------------------- 48 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTN---EQSLEQVFSKY--GQISEVVVVKDR----------------------------------- 48 (102)
T ss_dssp CCCCSEEEEESCCTTCC---HHHHHHHHHHH--SCCCEEEECCCS-----------------------------------
T ss_pred CCCCCEEEEECCCCCCC---HHHHHHHHHhc--CCeEEEEEEeCC-----------------------------------
Confidence 45678999999999766 47899999988 567777665431
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPE 330 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~ 330 (657)
...+..+.|||+|++.++|..|.+.++.. +...+.|+.|-.
T Consensus 49 ------------------------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 91 (102)
T 1x5s_A 49 ------------------------ETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGK 91 (102)
T ss_dssp ------------------------SSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEEC
T ss_pred ------------------------CCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 00123689999999999999999876654 335566665543
No 9
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.10 E-value=0.0033 Score=52.60 Aligned_cols=82 Identities=15% Similarity=0.245 Sum_probs=58.7
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....++|.|.|||.+.++ ++|+++|+++ |.|.++.+.+|.
T Consensus 7 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~----------------------------------- 46 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGE---TELREYFKKF--GVVTEVVMIYDA----------------------------------- 46 (99)
T ss_dssp CSSCCEEEEESCCSSCCH---HHHHHHHSSS--SCEEEEEECCCT-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEeCC-----------------------------------
Confidence 456789999999997664 7899999987 667777665431
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCCCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEPN 332 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P~ 332 (657)
...+..|.|||+|++.++|..|.+ +... +...+.|+.|-.++
T Consensus 47 ------------------------~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~~ 90 (99)
T 2dgs_A 47 ------------------------EKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRD 90 (99)
T ss_dssp ------------------------TTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCCC
T ss_pred ------------------------CCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCCc
Confidence 001236899999999999999998 5433 23556676665443
No 10
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=97.08 E-value=0.00096 Score=54.45 Aligned_cols=82 Identities=11% Similarity=0.104 Sum_probs=57.1
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCh
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~ 266 (657)
...+||.|.|||.+.++ ++|+++|+++ |.+.++.+..|..
T Consensus 2 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~~~i~~~~~----------------------------------- 41 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTK---DHIMEIFSTY--GKIKMIDMPVERM----------------------------------- 41 (88)
T ss_dssp CCCCEEEEECCCTTCCH---HHHHHHHHTT--SCEEEEECCEETT-----------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEeCCC-----------------------------------
Confidence 34679999999997664 7899999987 5666665544310
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCCC
Q 006191 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEP 331 (657)
Q Consensus 267 i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P 331 (657)
.+.+..|.|||+|++.++|..|.+.++.. +...+.|+.|-+|
T Consensus 42 -----------------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (88)
T 4a8x_A 42 -----------------------HPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAP 85 (88)
T ss_dssp -----------------------EEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCC
T ss_pred -----------------------CCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCC
Confidence 01113689999999999999999976554 2345566655333
No 11
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=97.06 E-value=0.0014 Score=53.39 Aligned_cols=78 Identities=17% Similarity=0.195 Sum_probs=55.7
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCh
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~ 266 (657)
++.+||.|.|||.+.+ .++|+++|+++ |.|.++.+.+|.
T Consensus 4 ~~~~~l~v~nlp~~~t---~~~l~~~F~~~--G~i~~v~i~~~~------------------------------------ 42 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEIT---TAAIAAAFAPF--GRISDARVVKDM------------------------------------ 42 (87)
T ss_dssp --CEEEEEESCCTTCC---HHHHHHHHGGG--SCEEEEEEEECT------------------------------------
T ss_pred CCceEEEEeCCCCCCC---HHHHHHHHHhc--CCEeEEEEEecC------------------------------------
Confidence 4578999999999766 47899999988 567777775531
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccC
Q 006191 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (657)
Q Consensus 267 i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 328 (657)
...+..|.|||+|++.++|..|.+.++.. +...+.|+.|
T Consensus 43 -----------------------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 43 -----------------------ATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp -----------------------TTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred -----------------------CCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 00123689999999999999999876543 2344555544
No 12
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.05 E-value=0.0028 Score=53.65 Aligned_cols=82 Identities=13% Similarity=0.125 Sum_probs=59.2
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....+||.|.|||.+.+ .++|+++|+++ |.|.++.+.+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t---~~~l~~~F~~~--G~i~~v~i~~~~----------------------------------- 51 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVS---EPLLWELFLQA--GPVVNTHMPKDR----------------------------------- 51 (105)
T ss_dssp CCTTTEEEEECCCTTCC---HHHHHHHHHTT--SCEEEEECCBCS-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCC---HHHHHHHHHhc--CCeEEEEEEecC-----------------------------------
Confidence 45678999999999766 47899999987 567666654431
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEP 331 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P 331 (657)
...+..|.|||+|++.++|..|.+.++.. ....+.|+.|-.+
T Consensus 52 ------------------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 95 (105)
T 1x5u_A 52 ------------------------VTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAH 95 (105)
T ss_dssp ------------------------SSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTT
T ss_pred ------------------------CCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 01123689999999999999999976654 3355677766433
No 13
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=97.04 E-value=0.0034 Score=53.21 Aligned_cols=81 Identities=16% Similarity=0.237 Sum_probs=59.1
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....++|.|.|||.+.++ ++|+++|+++ |.|.++.+.+|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~----------------------------------- 49 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDE---KDLKPLFEEF--GKIYELTVLKDR----------------------------------- 49 (106)
T ss_dssp CTTCEEEEEESCCTTCCH---HHHHHHHHHH--SCCCEEECCCCS-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEEecC-----------------------------------
Confidence 456789999999997664 7899999988 567676654431
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC-----CCCCceeccCCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST-----NPTDWLLEQAPE 330 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~-----~~~~~~v~~AP~ 330 (657)
...+..|.|||+|.+.++|..|.+.++.. ....+.|+.|-.
T Consensus 50 ------------------------~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 95 (106)
T 2dgp_A 50 ------------------------FTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADS 95 (106)
T ss_dssp ------------------------SSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCC
T ss_pred ------------------------CCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCc
Confidence 00123689999999999999999876653 335667776643
No 14
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.04 E-value=0.0023 Score=53.54 Aligned_cols=83 Identities=12% Similarity=0.143 Sum_probs=58.4
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....+||.|.|||.+.++ ++|+++|+++ |.|.++.+.+|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~----------------------------------- 44 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSE---EDLEKLFSAY--GPLSELHYPIDS----------------------------------- 44 (99)
T ss_dssp CCSCEEEEEECCCTTCCH---HHHHHHHHTT--SCEEEEECCCCT-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEeEEEEEecC-----------------------------------
Confidence 345689999999997664 7899999987 566666554321
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCCCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEPN 332 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P~ 332 (657)
...+..|.|||+|.+.++|..|.+.++.. +...+.|+.|-++.
T Consensus 45 ------------------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 89 (99)
T 1whw_A 45 ------------------------LTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKK 89 (99)
T ss_dssp ------------------------TTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCS
T ss_pred ------------------------CCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCc
Confidence 01123689999999999999999876543 33556666654443
No 15
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=97.03 E-value=0.0026 Score=52.37 Aligned_cols=80 Identities=15% Similarity=0.152 Sum_probs=57.5
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....++|.|.|||.+.+ .++|+++|+++ |.|.++.+.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t---~~~l~~~f~~~--G~v~~~~i~~~~----------------------------------- 44 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFT---WKMLKDKFNEC--GHVLYADIKMEN----------------------------------- 44 (92)
T ss_dssp SSSCCEEEECSCCTTCC---HHHHHHHHHTT--SCEEEEEEEESS-----------------------------------
T ss_pred CCCCcEEEEeCCCCCCC---HHHHHHHHHhc--CCEEEEEEEccC-----------------------------------
Confidence 45678999999998766 47899999987 566666553310
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeccCCCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAPEP 331 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~AP~P 331 (657)
.+..+.|||+|.+.++|..|.+.++... ...+.|+.|-++
T Consensus 45 --------------------------g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 45 --------------------------GKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp --------------------------SCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred --------------------------CCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 1125899999999999999998766542 345666655433
No 16
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.02 E-value=0.0021 Score=53.34 Aligned_cols=79 Identities=11% Similarity=0.124 Sum_probs=56.2
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceee-EEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSH-TVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v-~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
...+||.|.|||.+.+ .++|+++|+++ |.|.++ .+.+|.
T Consensus 3 ~~~~~l~V~nLp~~~t---~~~l~~~F~~~--G~i~~~~~i~~~~----------------------------------- 42 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEID---EKLLYDTFSAF--GVILQTPKIMRDP----------------------------------- 42 (96)
T ss_dssp SCCCEEEEECCCTTCC---HHHHHHHHHTT--SCBSSCCEECCCT-----------------------------------
T ss_pred CCCCEEEEeCCCCCCC---HHHHHHHHHhc--CCeeEEEEEEEcC-----------------------------------
Confidence 3568999999999766 47899999987 556565 554421
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 329 (657)
...+..|.|||+|++.++|..|.+.++.. +...+.|+.|-
T Consensus 43 ------------------------~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (96)
T 1x5t_A 43 ------------------------DTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF 84 (96)
T ss_dssp ------------------------TTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESC
T ss_pred ------------------------CCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEec
Confidence 00123689999999999999999976544 23455666553
No 17
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=97.02 E-value=0.0015 Score=52.81 Aligned_cols=69 Identities=14% Similarity=0.127 Sum_probs=51.5
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
.++.++|.|.|||.+.+ .++|+++|+++ |.+.++.+.+|.
T Consensus 4 ~~~~~~l~V~nl~~~~~---~~~l~~~f~~~--G~i~~v~i~~~~----------------------------------- 43 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVD---DKVLHAAFIPF--GDITDIQIPLDY----------------------------------- 43 (85)
T ss_dssp CCCSSEEEEECCCTTCC---HHHHHHHHGGG--SCEEEEECCEET-----------------------------------
T ss_pred CCCCCEEEEECCCCCCC---HHHHHHHHhcc--CCEEEEEEEECC-----------------------------------
Confidence 35678999999998766 47899999987 566666654431
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST 318 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~ 318 (657)
...+..|.|||+|++.++|..|.+.++..
T Consensus 44 ------------------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 72 (85)
T 3mdf_A 44 ------------------------ETEKHRGFAFVEFELAEDAAAAIDNMNES 72 (85)
T ss_dssp ------------------------TTTEECSEEEEEESSHHHHHHHHHHHTTC
T ss_pred ------------------------CCCccccEEEEEECCHHHHHHHHHHhCCC
Confidence 00123689999999999999999876544
No 18
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=96.99 E-value=0.0025 Score=55.05 Aligned_cols=80 Identities=15% Similarity=0.213 Sum_probs=57.8
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
.+..+||.|.|||.+.++ ++|+++|+++ |.|.++.+.+|..
T Consensus 22 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~~---------------------------------- 62 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGD---QDLLQMFMPF--GNVVSAKVFIDKQ---------------------------------- 62 (115)
T ss_dssp CSTTCCEEEESCCSSCCH---HHHHHHHGGG--SCCSEEEEEECSS----------------------------------
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEECCC----------------------------------
Confidence 345689999999997764 7899999988 5677777755310
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 329 (657)
..+..+.|||+|.+.++|..|.+.++.. ....++|+.|-
T Consensus 63 -------------------------~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 103 (115)
T 2cpz_A 63 -------------------------TNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 103 (115)
T ss_dssp -------------------------SCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred -------------------------CCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence 0123589999999999999999876543 23445565553
No 19
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=96.99 E-value=0.0037 Score=54.23 Aligned_cols=77 Identities=14% Similarity=0.155 Sum_probs=56.0
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCh
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~ 266 (657)
...+||.|.|||.+.+ .++|+++|+++ |.|.++.+..|-
T Consensus 5 ~~~~~l~V~nLp~~~t---~~~l~~~F~~~--G~i~~v~i~~~~------------------------------------ 43 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETN---EKMLKAVFGKH--GPISEVLLIKDR------------------------------------ 43 (116)
T ss_dssp CSCCEEEEECCTTTCC---HHHHHHHHHTS--SCCSEEEEECST------------------------------------
T ss_pred CCCCEEEEeCCCCCCC---HHHHHHHHHhc--CCEEEEEEEECC------------------------------------
Confidence 3468999999999766 47899999987 567777775531
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccC
Q 006191 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (657)
Q Consensus 267 i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 328 (657)
..+..|.|||+|++.++|..|.+.+... +...+.|+.|
T Consensus 44 ------------------------~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 44 ------------------------TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp ------------------------TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred ------------------------CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 0123689999999999999999876543 2334555544
No 20
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=96.99 E-value=0.0037 Score=52.89 Aligned_cols=79 Identities=20% Similarity=0.271 Sum_probs=58.7
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
.+..+||.|.|||.+.+ .++|+++|+++ |.|.++.+.+|.
T Consensus 12 ~~~~~~l~v~nLp~~~t---~~~l~~~F~~~--G~i~~v~i~~~~----------------------------------- 51 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQS---EEDVLRLFQPF--GVIDECTVLRGP----------------------------------- 51 (105)
T ss_dssp CCCCCEEEEESCCTTCC---HHHHHHHHTTT--SCEEEEEEEECS-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCC---HHHHHHHHHhc--CCeEEEEEEECC-----------------------------------
Confidence 45678999999999766 47899999987 567777765531
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--C---CCceeccCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--P---TDWLLEQAP 329 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~--~---~~~~v~~AP 329 (657)
..+..|.|||+|.+.++|..|.+.++... . ..+.|+.|-
T Consensus 52 -------------------------~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~ 95 (105)
T 2dnh_A 52 -------------------------DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFAD 95 (105)
T ss_dssp -------------------------SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESC
T ss_pred -------------------------CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECc
Confidence 01235899999999999999998776542 2 556777664
No 21
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.99 E-value=0.0024 Score=53.62 Aligned_cols=80 Identities=13% Similarity=0.166 Sum_probs=58.7
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....++|.|.|||.+.+ .++|+++|+++ |.|.++.+..|-
T Consensus 14 ~~~~~~l~v~nlp~~~t---~~~l~~~F~~~--G~i~~v~i~~~~----------------------------------- 53 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCT---KEELEEICKAH--GTVKDLRLVTNR----------------------------------- 53 (100)
T ss_dssp CCCCSCEEEESCCTTCC---HHHHHHHHTTT--SCEEEEEEEECT-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCC---HHHHHHHHHhC--CCeEEEEEEECC-----------------------------------
Confidence 45578999999999766 47899999987 567777765531
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPE 330 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~ 330 (657)
..+..|.|||+|++.++|..|.+.++.. +...+.|+.|-+
T Consensus 54 -------------------------~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 95 (100)
T 2do4_A 54 -------------------------AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNS 95 (100)
T ss_dssp -------------------------TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred -------------------------CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 0123589999999999999999876543 345566766643
No 22
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=96.97 E-value=0.0022 Score=53.39 Aligned_cols=78 Identities=12% Similarity=0.126 Sum_probs=56.4
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChHH
Q 006191 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVD 268 (657)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i~ 268 (657)
+++|.|.|||.+.+ .++|+++|+++ |.|.++.+.+|-
T Consensus 2 ~~~l~V~nLp~~~t---~~~l~~~F~~~--G~i~~v~i~~~~-------------------------------------- 38 (96)
T 2x1f_A 2 SRVVYLGSIPYDQT---EEQILDLCSNV--GPVINLKMMFDP-------------------------------------- 38 (96)
T ss_dssp CSEEEEESCCTTCC---HHHHHHHHHTT--SCEEEEECCBCT--------------------------------------
T ss_pred CcEEEEECCCCCCC---HHHHHHHHHhc--CCEEEEEEEeCC--------------------------------------
Confidence 57999999998766 47899999987 567666554321
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCC
Q 006191 269 HYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPE 330 (657)
Q Consensus 269 ~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~ 330 (657)
..++..|.|||+|++.++|..|.+.+... +...+.|+.|-+
T Consensus 39 ---------------------~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 39 ---------------------QTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp ---------------------TTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred ---------------------CCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 00123689999999999999999876543 335566776643
No 23
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.97 E-value=0.0029 Score=52.29 Aligned_cols=41 Identities=12% Similarity=0.153 Sum_probs=35.6
Q ss_pred cEEEEEecCHHHHHHHHHhcccCC--CCCceeccCCCCCCccc
Q 006191 296 QAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAPEPNDVYW 336 (657)
Q Consensus 296 ~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~AP~P~DIiW 336 (657)
|.|||+|+++++|+.|.+.++... .+.+++..|+..+|++=
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~~~ 89 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRELCE 89 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCCCC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcceeE
Confidence 899999999999999998877654 46788999999999863
No 24
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=96.96 E-value=0.0028 Score=51.02 Aligned_cols=76 Identities=29% Similarity=0.395 Sum_probs=56.1
Q ss_pred eEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChHHH
Q 006191 190 FTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVDH 269 (657)
Q Consensus 190 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i~~ 269 (657)
+||.|.|||.+.+ .++|+++|+++ |.+.++.+.+|.
T Consensus 2 ~~l~V~nlp~~~t---~~~l~~~f~~~--G~i~~~~i~~~~--------------------------------------- 37 (83)
T 3md1_A 2 FNLFVGDLNVNVD---DETLRNAFKDF--PSYLSGHVMWDM--------------------------------------- 37 (83)
T ss_dssp EEEEEECCCTTCC---HHHHHHHHTTS--TTEEEEEEEECT---------------------------------------
T ss_pred eEEEEeCCCCCCC---HHHHHHHHHhc--CCeeEEEEEEcC---------------------------------------
Confidence 7999999999766 47899999887 667777776531
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCC
Q 006191 270 YGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (657)
Q Consensus 270 ~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 329 (657)
...++.|.|||+|.+.++|..|.+.++.. +...+.++.|-
T Consensus 38 --------------------~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 38 --------------------QTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp --------------------TTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred --------------------CCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 00123689999999999999999876544 23456666664
No 25
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.95 E-value=0.0054 Score=51.64 Aligned_cols=80 Identities=18% Similarity=0.204 Sum_probs=58.3
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....++|.|.|||.+.++ ++|+++|+++ |.|.++.+.+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~~~----------------------------------- 51 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRD---PDLRQMFGQF--GKILDVEIIFNE----------------------------------- 51 (103)
T ss_dssp SCCCCEEEEESCCTTCCH---HHHHHHGGGT--SCEEEEEEECCT-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecC-----------------------------------
Confidence 456789999999997664 7899999987 667777765431
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEP 331 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P 331 (657)
. ...+.|||+|++.++|..|.+.++.. +...+.|+.|-.+
T Consensus 52 ------------------------~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 93 (103)
T 2cq3_A 52 ------------------------R--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 93 (103)
T ss_dssp ------------------------T--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSS
T ss_pred ------------------------C--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccC
Confidence 0 02589999999999999999876543 3345566655433
No 26
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=96.92 E-value=0.0031 Score=57.76 Aligned_cols=101 Identities=11% Similarity=0.190 Sum_probs=69.4
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChH
Q 006191 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (657)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i 267 (657)
+++||.|.|||.+.+ .++|+++|+++ |.+.++.+.+|..
T Consensus 1 s~~~l~v~nlp~~~~---~~~l~~~f~~~--G~i~~v~~~~~~~------------------------------------ 39 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMT---QEEFRSLFGSI--GEIESCKLVRDKI------------------------------------ 39 (167)
T ss_dssp CCSEEEEESCCTTCC---HHHHHHHHHTT--SCEEEEEEEECTT------------------------------------
T ss_pred CcceEEEcCCCCCCC---HHHHHHHHHhc--CCeEEEEEEeCCC------------------------------------
Confidence 467999999999776 47899999987 5677777655310
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeccCCC------CCCcccCCC
Q 006191 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAPE------PNDVYWPFF 339 (657)
Q Consensus 268 ~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~AP~------P~DIiW~NL 339 (657)
.+++.|.|||+|.+.++|..|.+.++... ...+.++.|.+ +..+.-.||
T Consensus 40 -----------------------~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl 96 (167)
T 1fxl_A 40 -----------------------TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGL 96 (167)
T ss_dssp -----------------------TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCGGGTTCEEEEESC
T ss_pred -----------------------CCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcccCCCCcEEECCC
Confidence 11236899999999999999998765432 33455555442 234777888
Q ss_pred CCchHHHHHHHHH
Q 006191 340 SASFMRRWISKIV 352 (657)
Q Consensus 340 ~~~~~~r~~R~~~ 352 (657)
..+..+..++.++
T Consensus 97 ~~~~t~~~l~~~f 109 (167)
T 1fxl_A 97 PKTMTQKELEQLF 109 (167)
T ss_dssp CTTCCHHHHHHHH
T ss_pred CCcCCHHHHHHHH
Confidence 7766555555533
No 27
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=96.91 E-value=0.0022 Score=55.48 Aligned_cols=75 Identities=15% Similarity=0.188 Sum_probs=55.2
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChH
Q 006191 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (657)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i 267 (657)
+..+|.|.|||.+.++ ++|+++|+++ |.|.++.+.+|.
T Consensus 4 ~~~~lfV~nLp~~~te---~~L~~~F~~~--G~v~~v~i~~d~------------------------------------- 41 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDN---KALYDTFSAF--GNILSCKVVCDE------------------------------------- 41 (115)
T ss_dssp -CCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEET-------------------------------------
T ss_pred CCCEEEECCCCCCCCH---HHHHHHHhcc--CCEEEEEEeecC-------------------------------------
Confidence 3468999999997764 8899999998 678888776531
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeccC
Q 006191 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (657)
Q Consensus 268 ~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~A 328 (657)
. ...|.|||+|++.++|+.|.+.++... ...+.|+.|
T Consensus 42 ----------------------~--~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 42 ----------------------N--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp ----------------------T--EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred ----------------------C--CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 0 014899999999999999998765542 334555554
No 28
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.90 E-value=0.0022 Score=53.01 Aligned_cols=68 Identities=19% Similarity=0.314 Sum_probs=51.4
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
.++.++|.|.|||.+.+ .++|+++|+++ |.|.++.+.+|.
T Consensus 13 ~~~~~~l~V~nlp~~~t---~~~l~~~f~~~--G~v~~v~i~~~~----------------------------------- 52 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLT---NNDLYRIFSKY--GKVVKVTIMKDK----------------------------------- 52 (94)
T ss_dssp CCCTTSEEEESCCTTSC---HHHHHHHTTTT--SCEEEEEECCCS-----------------------------------
T ss_pred CCCCCEEEEECCCCCCC---HHHHHHHHHhc--CCeEEEEEEeCC-----------------------------------
Confidence 45678999999998766 47899999987 567777664431
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhccc
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQS 317 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~ 317 (657)
...+..+.|||+|++.++|..|.+.++.
T Consensus 53 ------------------------~~~~~~g~afV~f~~~~~A~~A~~~l~g 80 (94)
T 2e5h_A 53 ------------------------DTRKSKGVAFILFLDKDSAQNCTRAINN 80 (94)
T ss_dssp ------------------------SSCCCTTCEEEEESCHHHHHHHHHHTTT
T ss_pred ------------------------CCCCcccEEEEEECCHHHHHHHHHHcCC
Confidence 0012368999999999999999987654
No 29
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=96.87 E-value=0.0027 Score=52.56 Aligned_cols=78 Identities=13% Similarity=0.129 Sum_probs=57.1
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....+||.|.|||.+.+ .++|+++|+++ |.|.++.+.+|.
T Consensus 13 ~~~~~~l~v~nlp~~~~---~~~l~~~F~~~--G~i~~v~i~~~~----------------------------------- 52 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVR---EEILYELFLQA--GPLTKVTICKDR----------------------------------- 52 (95)
T ss_dssp TTGGGEEEEECCCTTCC---HHHHHHHHGGG--SCEEEEEEEECT-----------------------------------
T ss_pred CCCCCEEEEECCCCCCC---HHHHHHHHHhc--CCEEEEEEEECC-----------------------------------
Confidence 45678999999999766 47899999988 567777775531
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeccC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~A 328 (657)
. .+..+.|||+|++.++|..|.+.++... ...+.|+.|
T Consensus 53 ------------------------~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 53 ------------------------E-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp ------------------------T-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred ------------------------C-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 0 1136899999999999999998765432 334555554
No 30
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=96.86 E-value=0.0048 Score=53.16 Aligned_cols=69 Identities=17% Similarity=0.278 Sum_probs=52.9
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....+||.|.|||.+.+ .++|+++|+++ |.|.++.+.+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t---~~~l~~~F~~~--G~i~~v~i~~~~----------------------------------- 51 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEIT---TEDIKAAFAPF--GRISDARVVKDM----------------------------------- 51 (115)
T ss_dssp STTCEEEEEESCCTTCC---HHHHHHHHGGG--SCEEEEEEEECT-----------------------------------
T ss_pred CCCCcEEEEeCCCCCCC---HHHHHHHHHhc--CCeEEEEEEEcC-----------------------------------
Confidence 45678999999999766 47899999988 667777776541
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST 318 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~ 318 (657)
...+..|.|||+|.+.++|+.|.+.++..
T Consensus 52 ------------------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 80 (115)
T 2dgo_A 52 ------------------------ATGKSKGYGFVSFFNKWDAENAIQQMGGQ 80 (115)
T ss_dssp ------------------------TTCCEEEEEEEEESSHHHHHHHHHHTTTC
T ss_pred ------------------------CCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 00123689999999999999999876543
No 31
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.85 E-value=0.005 Score=52.18 Aligned_cols=83 Identities=23% Similarity=0.296 Sum_probs=59.0
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....++|.|.|||.+.+ .+.|+++|+++ |.|.++.+.+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t---~~~l~~~F~~~--G~i~~v~i~~~~----------------------------------- 51 (107)
T 2cph_A 12 KQTTSKILVRNIPFQAN---QREIRELFSTF--GELKTVRLPKKM----------------------------------- 51 (107)
T ss_dssp SSCCCCEEEESCCTTCC---HHHHHHHHHTT--SCEEEEECCCCC-----------------------------------
T ss_pred CCCCCEEEEeCCCCcCC---HHHHHHHHHcc--CCeEEEEEecCC-----------------------------------
Confidence 45678999999999766 47899999987 567666554321
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhc-ccC--CCCCceeccCCCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQ-QST--NPTDWLLEQAPEP 331 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~-~~~--~~~~~~v~~AP~P 331 (657)
....+..|.|||+|.+.++|..|.+.+ +.. ....+.|+.|-..
T Consensus 52 -----------------------~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~ 97 (107)
T 2cph_A 52 -----------------------TGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSE 97 (107)
T ss_dssp -----------------------SSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCC
T ss_pred -----------------------CCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCC
Confidence 001124689999999999999999877 433 3456677766443
No 32
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.84 E-value=0.0028 Score=52.46 Aligned_cols=79 Identities=11% Similarity=0.116 Sum_probs=57.0
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
.+..++|.|.|||.+.+ .++|+++|+++ |.|.++.+.+|..
T Consensus 12 ~~~~~~l~v~nlp~~~t---~~~l~~~f~~~--G~v~~v~i~~~~~---------------------------------- 52 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTT---ERDLREVFSKY--GPIADVSIVYDQQ---------------------------------- 52 (95)
T ss_dssp CCGGGCEEEESCCSSCC---HHHHHHHHHTT--SCEEEEEEEECSS----------------------------------
T ss_pred CCCCCEEEEECCCCCCC---HHHHHHHHHhc--CCeeEEEEEEcCC----------------------------------
Confidence 45678999999999766 47899999987 5677777755310
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 328 (657)
..+..|.|||+|++.++|..|.+.++.. +...+.|+.|
T Consensus 53 -------------------------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 53 -------------------------SRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp -------------------------SSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred -------------------------CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 0123589999999999999999876543 2334555554
No 33
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.83 E-value=0.0051 Score=51.88 Aligned_cols=78 Identities=14% Similarity=0.194 Sum_probs=57.4
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhh-hCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKE-FHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKV 264 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~-~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kv 264 (657)
....++|.|.|||.+.+ .++|+++|++ + |.|.++.+.+|.
T Consensus 6 ~~~~~~l~V~nLp~~~t---~~~l~~~F~~~~--G~v~~v~i~~~~---------------------------------- 46 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVD---DGMLYEFFVKVY--PSCRGGKVVLDQ---------------------------------- 46 (104)
T ss_dssp SSCCCCEEEECCCTTCC---HHHHHHHHHHHC--TTEEEEEEEECT----------------------------------
T ss_pred CCCCcEEEEeCCCCCCC---HHHHHHHHHHhC--CCeEEEEEEECC----------------------------------
Confidence 45568999999999766 4789999998 6 567777775531
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC---CCCceeccC
Q 006191 265 DLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN---PTDWLLEQA 328 (657)
Q Consensus 265 d~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~---~~~~~v~~A 328 (657)
..+..|.|||+|.+.++|..|.+.++... ...+.|+.|
T Consensus 47 --------------------------~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a 87 (104)
T 2dhg_A 47 --------------------------TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 87 (104)
T ss_dssp --------------------------TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred --------------------------CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEc
Confidence 01135899999999999999998766433 344556655
No 34
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.83 E-value=0.004 Score=52.51 Aligned_cols=80 Identities=18% Similarity=0.173 Sum_probs=58.0
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....+||.|.|||.+.+ .++|+++|+++ |.|.++.+.+|-.
T Consensus 12 ~~~~~~l~V~nlp~~~t---~~~l~~~f~~~--G~i~~v~i~~~~~---------------------------------- 52 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTR---ETDLQELFRPF--GSISRIYLAKDKT---------------------------------- 52 (103)
T ss_dssp CSSSEEEEEESCCTTCC---HHHHHTTSTTT--CCEEEEEEEECSS----------------------------------
T ss_pred CCCCCEEEEeCCCCCCC---HHHHHHHHHhC--CCeEEEEEeecCC----------------------------------
Confidence 45678999999999766 47899999987 6677777755310
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 329 (657)
..+..|.|||+|++.++|..|.+.++.. +...+.|+.|-
T Consensus 53 -------------------------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (103)
T 2cq0_A 53 -------------------------TGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 93 (103)
T ss_dssp -------------------------SCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred -------------------------CCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECC
Confidence 0123689999999999999999976543 23445555553
No 35
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=96.83 E-value=0.0049 Score=52.20 Aligned_cols=79 Identities=9% Similarity=0.062 Sum_probs=57.6
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....+||.|.|||.+.+ .++|+++|+++ |.|.++.+..|-
T Consensus 20 ~~~~~~l~V~nlp~~~t---~~~l~~~f~~~--G~i~~v~i~~~~----------------------------------- 59 (106)
T 1p27_B 20 SVEGWILFVTGVHEEAT---EEDIHDKFAEY--GEIKNIHLNLDR----------------------------------- 59 (106)
T ss_dssp BTTBEEEEEECCCTTCC---HHHHHHHHGGG--SCEEEEEEEECT-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCC---HHHHHHHHhcc--CCeEEEEEEecC-----------------------------------
Confidence 34568999999999766 47899999988 677777775531
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 328 (657)
...+..|.|||+|++.++|..|.+.++.. ....+.|+.|
T Consensus 60 ------------------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 60 ------------------------RTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp ------------------------TTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred ------------------------CCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 00123589999999999999999876554 2345556544
No 36
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.81 E-value=0.0036 Score=52.77 Aligned_cols=80 Identities=15% Similarity=0.157 Sum_probs=57.0
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....+||.|.|||.+.+ .++|+++|+++ |.|.++.+.+|-
T Consensus 10 ~~~~~~l~V~nLp~~~t---~~~l~~~f~~~--G~i~~v~i~~~~----------------------------------- 49 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTS---PDSLRRVFEKY--GRVGDVYIPREP----------------------------------- 49 (103)
T ss_dssp CSCCCEEEEESCCTTCC---HHHHHHHHTTT--SCEEEEECCBCS-----------------------------------
T ss_pred CCCCeEEEEeCCCCCCC---HHHHHHHHHhc--CCEEEEEEEeCC-----------------------------------
Confidence 34568999999999766 47899999987 567666654421
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeccCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAP 329 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~AP 329 (657)
...+..|.|||+|.+.++|..|.+.++... ...+.|+.|-
T Consensus 50 ------------------------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dnm_A 50 ------------------------HTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVAR 91 (103)
T ss_dssp ------------------------SSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECS
T ss_pred ------------------------CCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECC
Confidence 001236899999999999999999765542 3445666553
No 37
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.80 E-value=0.0057 Score=51.03 Aligned_cols=80 Identities=13% Similarity=0.137 Sum_probs=57.3
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcce-eeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYL-SHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKV 264 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~-~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kv 264 (657)
....+||.|.|||.+.+ .++|+++|+++ |.+. ++.+.+|-
T Consensus 6 ~~~~~~l~V~nLp~~~t---~~~l~~~F~~~--G~i~~~v~i~~~~---------------------------------- 46 (99)
T 2div_A 6 SGMAASLWMGDLEPYMD---ENFISRAFATM--GETVMSVKIIRNR---------------------------------- 46 (99)
T ss_dssp CSSSSEEEECSCCTTCC---HHHHHHHHHHT--TCCCCEEEEEECS----------------------------------
T ss_pred CCCccEEEEeCCCCCCC---HHHHHHHHHHh--CCcceEEEEeecC----------------------------------
Confidence 44578999999999766 47899999987 5666 77776541
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCC----ceeccCC
Q 006191 265 DLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTD----WLLEQAP 329 (657)
Q Consensus 265 d~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~----~~v~~AP 329 (657)
...+..|.|||+|++.++|..|.+.++.. .... ++++.|-
T Consensus 47 -------------------------~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~ 92 (99)
T 2div_A 47 -------------------------LTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYAT 92 (99)
T ss_dssp -------------------------SSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETT
T ss_pred -------------------------CCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecC
Confidence 00123589999999999999999976543 1223 6666554
No 38
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.80 E-value=0.0045 Score=52.32 Aligned_cols=81 Identities=10% Similarity=0.202 Sum_probs=57.2
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....+||.|.|||.+.+ .++|+++|+++ | |.++.+.+|-.
T Consensus 12 ~~~~~~l~V~nlp~~~t---~~~l~~~F~~~--G-i~~v~i~~~~~---------------------------------- 51 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVT---EESIKEFFRGL--N-ISAVRLPREPS---------------------------------- 51 (104)
T ss_dssp SSSCEEEEEESCCSSCC---HHHHHHHTTTS--C-EEEEECCBCSS----------------------------------
T ss_pred CCCCCEEEEeCCCCcCC---HHHHHHHHHHC--C-ceEEEEecCCC----------------------------------
Confidence 45679999999999766 47899999987 5 77776644310
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEP 331 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P 331 (657)
...+..|.|||+|++.++|..|. .++.. +...+.|+.|-++
T Consensus 52 ------------------------~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 94 (104)
T 1wi8_A 52 ------------------------NPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQA 94 (104)
T ss_dssp ------------------------CTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCC
T ss_pred ------------------------CCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCC
Confidence 00123689999999999999999 55443 2345666666443
No 39
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.80 E-value=0.0059 Score=51.41 Aligned_cols=79 Identities=15% Similarity=0.124 Sum_probs=57.7
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....++|.|.|||.+.+ .++|+++|+++ |.|.++.+.+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t---~~~l~~~F~~~--G~i~~v~i~~~~----------------------------------- 51 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVT---EVLILQLFSQI--GPCKSCKMITEH----------------------------------- 51 (103)
T ss_dssp SCCCCEEEEESCCTTCC---HHHHHHHHHHH--SCEEEEEEECCC-----------------------------------
T ss_pred CCCCCEEEEeCCCccCC---HHHHHHHHHhc--CCEeEEEEEecC-----------------------------------
Confidence 34568999999999766 47899999988 567777775531
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPE 330 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~ 330 (657)
. ...+.|||+|++.++|..|.+.++.. ....+.|+.|-.
T Consensus 52 ------------------------~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 52 ------------------------T--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp ------------------------C--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred ------------------------C--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 0 02489999999999999999876543 234566666543
No 40
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.80 E-value=0.0042 Score=53.68 Aligned_cols=79 Identities=15% Similarity=0.201 Sum_probs=56.3
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....+||.|.|||.+.+ .++|+++|+++ +.|.++.+.+|-
T Consensus 14 ~~~~~~l~V~nlp~~~t---~~~l~~~F~~~--G~i~~v~i~~~~----------------------------------- 53 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTT---DASLRKYFEGF--GDIEEAVVITDR----------------------------------- 53 (116)
T ss_dssp SCSSSEEEEECCCSSCC---HHHHHHHHHTT--SCEEEEEESCCS-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCC---HHHHHHHHHhC--CCeeEEEEEEcC-----------------------------------
Confidence 45678999999999766 47899999987 567777664431
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC-CCCCceeccC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST-NPTDWLLEQA 328 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~-~~~~~~v~~A 328 (657)
...+..+.|||+|++.++|+.|.+.+... +...+.|+.|
T Consensus 54 ------------------------~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 93 (116)
T 2cqd_A 54 ------------------------QTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLA 93 (116)
T ss_dssp ------------------------SSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEES
T ss_pred ------------------------CCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEc
Confidence 00123689999999999999999876531 2234555555
No 41
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=96.76 E-value=0.0038 Score=50.92 Aligned_cols=77 Identities=10% Similarity=0.157 Sum_probs=55.4
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChH
Q 006191 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (657)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i 267 (657)
+.+||.|.|||.+.+ .++|+++|+++ |.|.++.+.+|..
T Consensus 5 ~~~~l~V~nlp~~~t---~~~l~~~F~~~--G~i~~v~i~~~~~------------------------------------ 43 (89)
T 3ucg_A 5 DARSIYVGNVDYGAT---AEELEAHFHGC--GSVNRVTILCDKF------------------------------------ 43 (89)
T ss_dssp HHTEEEEESCCTTCC---HHHHHHHHGGG--CCEEEEEEEESCS------------------------------------
T ss_pred cCCEEEEeCCCCCCC---HHHHHHHHHhC--CCEEEEEEEecCC------------------------------------
Confidence 357999999999766 47899999987 6677777765410
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCC
Q 006191 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (657)
Q Consensus 268 ~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 329 (657)
..++.|.|||+|.+.++|..|. .++.. +...+.|+.|-
T Consensus 44 -----------------------~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 44 -----------------------SGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp -----------------------SSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred -----------------------CCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 0123689999999999999998 55433 23455666553
No 42
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.75 E-value=0.0041 Score=52.38 Aligned_cols=81 Identities=12% Similarity=0.135 Sum_probs=57.3
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....+||.|.|||.+.+ .++|+++|+++ |.|.++.+.+|..
T Consensus 12 ~~~~~~l~v~nlp~~~t---~~~l~~~F~~~--G~i~~v~i~~~~~---------------------------------- 52 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTT---EQDLKEYFSTF--GEVLMVQVKKDLK---------------------------------- 52 (103)
T ss_dssp CCCCCCEEEESCCSSCC---HHHHHHHHGGG--SCEEEEEEEECSS----------------------------------
T ss_pred cCCCCEEEEEcCCCcCC---HHHHHHHHHhc--CCeEEEEEEecCC----------------------------------
Confidence 34568999999999776 47899999988 5677777765410
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCCCCCceeccCCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTNPTDWLLEQAPE 330 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~~~~~~v~~AP~ 330 (657)
..+..|.|||+|++.++|..|.+..+.-+...+.|+.|-+
T Consensus 53 -------------------------~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~~ 92 (103)
T 2cqg_A 53 -------------------------TGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS 92 (103)
T ss_dssp -------------------------SCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCCT
T ss_pred -------------------------CCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecCC
Confidence 0123589999999999999998842222334556665543
No 43
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=96.74 E-value=0.0061 Score=50.96 Aligned_cols=79 Identities=15% Similarity=0.146 Sum_probs=55.5
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCccee--------eEEEcccchHHHHHHHHHHHHHHHhhhccCCCCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLS--------HTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQE 257 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~--------v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~r 257 (657)
.+..++|.|.|||.+.+ .++|+++|+++ |.+.+ +.+.+|-
T Consensus 10 ~~~~~~l~V~nLp~~~t---~~~l~~~F~~~--G~i~~~~~~~~~~v~i~~~~--------------------------- 57 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVT---IESVADYFKQI--GIIKTNKKTGQPMINLYTDR--------------------------- 57 (99)
T ss_dssp CCCCSEEEEECCCSSCC---HHHHHHHHTTT--SCBCEETTTTEESEEEEECT---------------------------
T ss_pred CCCCCEEEEeCCCCCCC---HHHHHHHHHHh--CCEeeccccccccEEEEecC---------------------------
Confidence 45678999999999766 47899999987 55555 4443320
Q ss_pred CCCCccCChHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccC
Q 006191 258 KNQQRKVDLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (657)
Q Consensus 258 Pk~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 328 (657)
...+..|.|||+|.+.++|+.|.+.+... +...++|+.|
T Consensus 58 --------------------------------~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 58 --------------------------------ETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp --------------------------------TTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred --------------------------------CCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 00123689999999999999999876544 2345555554
No 44
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.73 E-value=0.0026 Score=53.11 Aligned_cols=83 Identities=18% Similarity=0.249 Sum_probs=57.2
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
.+..++|.|.|||.+.++ ++|+++|+++ +.+.++.+..+-
T Consensus 12 ~~~~~~l~v~nLp~~~t~---~~l~~~F~~~--G~v~~~~~~~~~----------------------------------- 51 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSI---DEILDFFYGY--QVIPGSVCLKYN----------------------------------- 51 (98)
T ss_dssp CCSSEEEEEESCCTTCCH---HHHHHHTTTS--CCCTTTCEEEEC-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHHc--CCccceEEEEEC-----------------------------------
Confidence 345689999999997664 7899999887 333333222210
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCCCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEPN 332 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P~ 332 (657)
...++.|.|||+|++.++|+.|.+.++.. ....+.|+.|-.|.
T Consensus 52 ------------------------~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (98)
T 2cqp_A 52 ------------------------EKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGPS 96 (98)
T ss_dssp ------------------------SSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCSS
T ss_pred ------------------------CCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Confidence 01123689999999999999999877644 34567777776654
No 45
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.72 E-value=0.0062 Score=51.26 Aligned_cols=78 Identities=17% Similarity=0.188 Sum_probs=57.3
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....+||.|.|||.+.++ ++|+++|+++ |.|.++.+.+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~------------------------------------ 50 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDD---ERLRKAFSPF--GTITSAKVMME------------------------------------ 50 (103)
T ss_dssp CSSCCCEEEECCCTTCCH---HHHHHTTTTT--SCEEEEEEEEC------------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEcC------------------------------------
Confidence 446789999999997664 7899999987 56777766442
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 329 (657)
..+..+.|||+|++.++|..|.+.++.. ....+.|+.|-
T Consensus 51 -------------------------~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 51 -------------------------GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp -------------------------SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred -------------------------CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 0112589999999999999999876544 33556666553
No 46
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.71 E-value=0.0046 Score=48.89 Aligned_cols=75 Identities=11% Similarity=0.237 Sum_probs=52.9
Q ss_pred eEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChHHH
Q 006191 190 FTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVDH 269 (657)
Q Consensus 190 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i~~ 269 (657)
.||.|.|||.+.++ ++|+++|++. |.+.++.+.+|.
T Consensus 1 ~~l~v~nlp~~~t~---~~l~~~F~~~--G~v~~v~i~~~~--------------------------------------- 36 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQ---EGLREYFGQF--GEVKECLVMRDP--------------------------------------- 36 (77)
T ss_dssp CCEEEESCCSSCCS---HHHHHHHTTT--SCCCCEEEECCC---------------------------------------
T ss_pred CEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEecCC---------------------------------------
Confidence 37899999997765 7899999987 556666665431
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC-CCCCceeccC
Q 006191 270 YGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST-NPTDWLLEQA 328 (657)
Q Consensus 270 ~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~-~~~~~~v~~A 328 (657)
...++.|.|||+|++.++|..|.+..... +...+.++.|
T Consensus 37 --------------------~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 37 --------------------LTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp --------------------CSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred --------------------CCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 00123689999999999999999876511 2344555544
No 47
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=96.69 E-value=0.0048 Score=52.37 Aligned_cols=79 Identities=16% Similarity=0.164 Sum_probs=57.4
Q ss_pred CCCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccC
Q 006191 185 PQPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKV 264 (657)
Q Consensus 185 ~~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kv 264 (657)
.....++|.|.|||.+.+ .++|+++|+++ |.|.++.+.+|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t---~~~l~~~F~~~--G~i~~v~i~~~~---------------------------------- 65 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVS---DADIQELFAEF--GTLKKAAVHYDR---------------------------------- 65 (107)
T ss_dssp CCCCSEEEEEESCCTTCC---HHHHHHHHHTT--SCEEEEEEEECT----------------------------------
T ss_pred CCCCCCEEEEeCCCCCCC---HHHHHHHHHhc--CCeEEEEEEECC----------------------------------
Confidence 345678999999999766 47899999987 667777775531
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeccC
Q 006191 265 DLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (657)
Q Consensus 265 d~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~A 328 (657)
..+..|.|||+|++.++|..|.+.++... ...+.|+.|
T Consensus 66 --------------------------~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 66 --------------------------SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp --------------------------TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred --------------------------CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 01236899999999999999999765442 334555554
No 48
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=96.69 E-value=0.0055 Score=52.30 Aligned_cols=79 Identities=13% Similarity=0.101 Sum_probs=56.2
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....+||.|.|||.+.+ .+.|+++|+++ |.|.++.+..|.
T Consensus 23 ~~~~~~l~V~nlp~~~t---~~~l~~~F~~~--G~i~~v~i~~~~----------------------------------- 62 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQ---EDEIQEKFCDY--GEIKNIHLNLDR----------------------------------- 62 (110)
T ss_dssp BTTBEEEEEESCCTTCC---HHHHHHHHGGG--SCEEEEECCBCT-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCC---HHHHHHHHHhc--CCEEEEEEEecC-----------------------------------
Confidence 45678999999999766 47899999988 567666554321
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 328 (657)
...+..|.|||+|.+.++|..|.+.++.. +...+.|+.|
T Consensus 63 ------------------------~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 63 ------------------------RTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp ------------------------TTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred ------------------------CCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 01123689999999999999999876543 2344555544
No 49
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=96.68 E-value=0.0044 Score=53.65 Aligned_cols=69 Identities=17% Similarity=0.242 Sum_probs=52.2
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
.+..+||.|.|||.+.+ .++|+++|+++ |.|.++.+.+|-
T Consensus 37 ~~~~~~l~V~nlp~~~t---~~~l~~~F~~~--G~i~~~~i~~~~----------------------------------- 76 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFT---DTDLASTFLPF--GNVISAKVFIDK----------------------------------- 76 (118)
T ss_dssp CCCSEEEEEECSCTTCC---HHHHHHHTTTS--CEEEEEEECCCS-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCC---HHHHHHHHHhc--CCEEEEEEEeCC-----------------------------------
Confidence 34568999999999766 47899999987 667777664431
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST 318 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~ 318 (657)
...+..|.|||+|.+.++|..|.+.++..
T Consensus 77 ------------------------~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 105 (118)
T 2khc_A 77 ------------------------QTSLSKCFGFVSFDNPDSAQVAIKAMNGF 105 (118)
T ss_dssp ------------------------SSSCCCCEEEEEEESSHHHHHHHHHCCCC
T ss_pred ------------------------CCCCcCcEEEEEECCHHHHHHHHHHcCCC
Confidence 00123689999999999999999876543
No 50
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.68 E-value=0.0035 Score=52.71 Aligned_cols=80 Identities=14% Similarity=0.085 Sum_probs=56.1
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....++|.|.|||.+.+ .++|+++|+++ |.|.++.+.+|-
T Consensus 9 ~~~~~~l~V~nLp~~~t---~~~l~~~f~~~--G~i~~v~i~~~~----------------------------------- 48 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVD---DKVLHAAFIPF--GDITDIQIPLDY----------------------------------- 48 (102)
T ss_dssp CCCCSCEEEESCCSSCC---HHHHHHHHTTT--SCCCCEECCCCS-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCC---HHHHHHHhhcc--CCEEEEEEEecC-----------------------------------
Confidence 45678999999999766 47899999987 566666554321
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 329 (657)
...+..+.|||+|.+.++|..|.+.++.. ....+.|+.|-
T Consensus 49 ------------------------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 49 ------------------------ETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 90 (102)
T ss_dssp ------------------------SSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred ------------------------CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence 00123689999999999999999876433 23445555543
No 51
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.68 E-value=0.0063 Score=51.94 Aligned_cols=80 Identities=14% Similarity=0.213 Sum_probs=57.2
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....+||.|.|||.+.+ .++|+++|+++ |.|.++.+.+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t---~~~l~~~F~~~--G~i~~v~i~~~~----------------------------------- 51 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSE---EEALGEVLQQF--GDLKYVRVVLHP----------------------------------- 51 (111)
T ss_dssp CCCCCCEEEESCCTTCC---HHHHHHHHHTT--SCEEEEECCBCS-----------------------------------
T ss_pred CCCCCEEEEECCCCCCC---HHHHHHHHHhc--CCeEEEEEEecC-----------------------------------
Confidence 34568999999999766 47899999987 567666664431
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcc------cC--CCCCceeccCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQ------ST--NPTDWLLEQAP 329 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~------~~--~~~~~~v~~AP 329 (657)
...+..|.|||+|.+.++|..|.+.++ .. +...+.|+.|-
T Consensus 52 ------------------------~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~ 99 (111)
T 1x4h_A 52 ------------------------DTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAV 99 (111)
T ss_dssp ------------------------SSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCC
T ss_pred ------------------------CCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECC
Confidence 001236899999999999999998775 22 23456666554
No 52
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.68 E-value=0.0023 Score=53.98 Aligned_cols=81 Identities=15% Similarity=0.206 Sum_probs=58.6
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCh
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~ 266 (657)
.+.+||.|.|||.+.+ .+.|+++|+++ |.|.++.+.+|-
T Consensus 6 ~~~~~l~V~nlp~~~~---~~~l~~~f~~~--G~i~~~~i~~~~------------------------------------ 44 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEAT---EEQLKDIFSEV--GPVVSFRLVYDR------------------------------------ 44 (104)
T ss_dssp HHHSCEEEESCCTTSC---HHHHHHHHHTT--SCCSEEEEEEET------------------------------------
T ss_pred CCccEEEEeCCCCcCC---HHHHHHHHHhc--CCeeEEEEEeCC------------------------------------
Confidence 3468999999998765 47899999987 567777765531
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCCC
Q 006191 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEP 331 (657)
Q Consensus 267 i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P 331 (657)
...++.|.|||+|.+.++|..|.+.++.. ....+.|+.|-.+
T Consensus 45 -----------------------~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 88 (104)
T 1p1t_A 45 -----------------------ETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASE 88 (104)
T ss_dssp -----------------------TTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCT
T ss_pred -----------------------CCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCc
Confidence 00113589999999999999999876543 3455667766443
No 53
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.67 E-value=0.0068 Score=50.65 Aligned_cols=76 Identities=12% Similarity=0.138 Sum_probs=56.0
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
.+..+||.|.|||.+.+ .++|+++|+++ |.|.++.+..
T Consensus 12 ~~~~~~l~V~nlp~~~t---~~~l~~~F~~~--G~i~~v~~~~------------------------------------- 49 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDIT---EEEMRKLFEKY--GKAGEVFIHK------------------------------------- 49 (99)
T ss_dssp CCCTTEEEEESCCTTCC---HHHHHHHTSTT--CCCSEEEEET-------------------------------------
T ss_pred CCCCCEEEEeCCCCCCC---HHHHHHHHhhc--CCeEEEEEec-------------------------------------
Confidence 45678999999999766 47899999887 4555554421
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEP 331 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P 331 (657)
..+.|||+|++.++|..|.+.++.. +...+.|+.|-++
T Consensus 50 ----------------------------~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 50 ----------------------------DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp ----------------------------TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred ----------------------------CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 1379999999999999999877654 3456777776543
No 54
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=96.65 E-value=0.0045 Score=56.78 Aligned_cols=101 Identities=12% Similarity=0.189 Sum_probs=68.9
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChH
Q 006191 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (657)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i 267 (657)
+.+||.|.|||.+.+ .++|+++|+++ |.|.++.+.++.
T Consensus 2 ~~~~l~v~nlp~~~~---~~~l~~~f~~~--G~i~~v~i~~~~------------------------------------- 39 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMT---DRELYALFRAI--GPINTCRIMRDY------------------------------------- 39 (168)
T ss_dssp CCSEEEEECCCTTCC---HHHHHHHHHTT--SCEEEEECCEET-------------------------------------
T ss_pred CccEEEEeCCCCCCC---HHHHHHHHHhc--CCeeEEEEEEeC-------------------------------------
Confidence 468999999999776 47899999987 556666554321
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCC------CCCCcccCCC
Q 006191 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP------EPNDVYWPFF 339 (657)
Q Consensus 268 ~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP------~P~DIiW~NL 339 (657)
...++.|.|||+|.++++|..|.+.++.. ....+.++.|. ++.-+.-.||
T Consensus 40 ----------------------~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl 97 (168)
T 1b7f_A 40 ----------------------KTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNL 97 (168)
T ss_dssp ----------------------TTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSSTTTTCEEEEESC
T ss_pred ----------------------CCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcccCCCCCEEEeCC
Confidence 00123689999999999999999866543 22334444433 3445788888
Q ss_pred CCchHHHHHHHHH
Q 006191 340 SASFMRRWISKIV 352 (657)
Q Consensus 340 ~~~~~~r~~R~~~ 352 (657)
..+..+..++..+
T Consensus 98 ~~~~t~~~l~~~f 110 (168)
T 1b7f_A 98 PRTITDDQLDTIF 110 (168)
T ss_dssp CTTCCHHHHHHHH
T ss_pred CCCCCHHHHHHhh
Confidence 8776666655543
No 55
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=96.63 E-value=0.0034 Score=51.09 Aligned_cols=39 Identities=10% Similarity=0.272 Sum_probs=31.1
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcc
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQ 229 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~ 229 (657)
....+||.|.|||.+.+ .+.|+++|+++ |.|.++.+.+|
T Consensus 8 ~~~~~~l~V~nlp~~~t---~~~l~~~F~~~--G~i~~v~i~~~ 46 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTS---KKDLKDYFTKF--GEVVDCTIKMD 46 (87)
T ss_dssp CSCTTEEEEECCCTTCC---HHHHHHHHTTT--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC---HHHHHHHHHhC--CCEEEEEEeec
Confidence 45678999999999766 47899999887 67778777654
No 56
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=96.62 E-value=0.0058 Score=55.83 Aligned_cols=80 Identities=13% Similarity=0.086 Sum_probs=58.8
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCh
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~ 266 (657)
...+||.|.|||.+.+ .++|+++|+++ +.|.++.+.+|..
T Consensus 37 ~~~~~l~V~nlp~~~t---~~~l~~~F~~~--G~i~~v~i~~~~~----------------------------------- 76 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTT---EEQIYELFSKS--GDIKKIIMGLDKM----------------------------------- 76 (156)
T ss_dssp TTCCEEEEESCCTTCC---HHHHHHHHGGG--SCEEEEEEEECTT-----------------------------------
T ss_pred CCCCEEEEeCCCCCCC---HHHHHHHHHhc--CCeEEEEEEecCC-----------------------------------
Confidence 4568999999998766 47899999988 5677877765410
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCC
Q 006191 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPE 330 (657)
Q Consensus 267 i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~ 330 (657)
..+..+.|||+|++.++|..|.+.+... ....+.|+.|.+
T Consensus 77 ------------------------~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 118 (156)
T 1h2v_Z 77 ------------------------KKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAG 118 (156)
T ss_dssp ------------------------TCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred ------------------------CCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 0123589999999999999999976543 234566666643
No 57
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=96.62 E-value=0.0063 Score=53.75 Aligned_cols=88 Identities=11% Similarity=0.047 Sum_probs=63.3
Q ss_pred CcceEEEEeccCCCCC-CchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 187 PHQFTVLVRSIPVSAG-STIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~-~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
+...||.|.|||.+.+ +++++.|.++|+++ |.|.++.+..
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~--G~I~~v~i~~------------------------------------- 67 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQ--GDILDIVVDL------------------------------------- 67 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHH--SCEEEEEECC-------------------------------------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccC--CCeEEEEecc-------------------------------------
Confidence 4467999999998654 34556677899988 5665554311
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeccCCCCCCcccCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAPEPNDVYWPF 338 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~AP~P~DIiW~N 338 (657)
..+..|.|||+|.+.++|..|.+.+.... ...+.|+.|-.++|...+.
T Consensus 68 -------------------------~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~~~~~~ 117 (127)
T 2a3j_A 68 -------------------------SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQSQVAED 117 (127)
T ss_dssp -------------------------CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCHHHHCC
T ss_pred -------------------------CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcchhcccc
Confidence 01235899999999999999998876543 4567888888777776543
No 58
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.61 E-value=0.011 Score=50.42 Aligned_cols=76 Identities=16% Similarity=0.184 Sum_probs=54.2
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....+||.|.|||.+.+ .++|+++|+++ +.|.++.+..+
T Consensus 19 ~~~~~~l~V~nLp~~~t---~~~l~~~F~~~--G~v~~~~i~~~------------------------------------ 57 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIR---TKDIEDVFYKY--GAIRDIDLKNR------------------------------------ 57 (109)
T ss_dssp CCCSSEEEEESCCTTCC---HHHHHHHHGGG--SCEEEEEECCS------------------------------------
T ss_pred CCCCCEEEEeCCCCCCC---HHHHHHHHHhc--CCeEEEEEEEC------------------------------------
Confidence 34568999999999766 47899999987 55665544110
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 328 (657)
.+..+.|||+|++.++|..|.+.++.. +...+.|+.|
T Consensus 58 --------------------------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 58 --------------------------RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp --------------------------SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred --------------------------CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 012589999999999999999876543 2344555554
No 59
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=96.61 E-value=0.0087 Score=52.31 Aligned_cols=78 Identities=18% Similarity=0.207 Sum_probs=56.7
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCh
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~ 266 (657)
...+||.|.|||.+.+ .++|+++|+++ |.|.++.+.+|-
T Consensus 33 ~~~~~l~V~nlp~~~t---~~~l~~~F~~~--G~v~~v~i~~~~------------------------------------ 71 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVS---DADIQELFAEF--GTLKKAAVDYDR------------------------------------ 71 (124)
T ss_dssp SSCEEEEEESCCSSCC---HHHHHHHHHTT--SCCSEEEEECCS------------------------------------
T ss_pred CCCCEEEEeCCCCCCC---HHHHHHHHHhc--CCeeEEEEEECC------------------------------------
Confidence 3468999999998766 47899999987 567777765531
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCC
Q 006191 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (657)
Q Consensus 267 i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 329 (657)
..+..|.|||+|++.++|..|.+.+... +...+.|+.|.
T Consensus 72 ------------------------~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 72 ------------------------SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp ------------------------SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred ------------------------CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 0123689999999999999999876543 33455565553
No 60
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.60 E-value=0.0056 Score=52.32 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=56.5
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....++|.|.|||.+.+ .++|+++|+++ |.|.++.+.+|.
T Consensus 26 ~~~~~~l~V~nLp~~~t---e~~l~~~F~~~--G~i~~v~i~~~~----------------------------------- 65 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFR---DPDLRQMFGQF--GKILDVEIIFNE----------------------------------- 65 (109)
T ss_dssp TTCCCEEEEESCCTTCC---HHHHHHHGGGT--CCCSCEEECCBT-----------------------------------
T ss_pred CCCCCEEEEECCCCcCC---HHHHHHHHHhc--CCEEEEEEEECC-----------------------------------
Confidence 45678999999999766 47899999988 567666664420
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 328 (657)
. ...|.|||+|++.++|..|.+.+... +...+.|+.|
T Consensus 66 ------------------------~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 66 ------------------------R--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp ------------------------T--BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ------------------------C--CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 0 12589999999999999999876544 2345566655
No 61
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=96.60 E-value=0.0035 Score=51.36 Aligned_cols=77 Identities=16% Similarity=0.191 Sum_probs=54.2
Q ss_pred eEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChHHH
Q 006191 190 FTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVDH 269 (657)
Q Consensus 190 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i~~ 269 (657)
+||.|.|||.+.+ .++|+++|+++ |.+.++.+.+|.
T Consensus 2 ~~l~V~nLp~~~t---~~~l~~~F~~~--G~i~~v~i~~~~--------------------------------------- 37 (90)
T 2ki2_A 2 RNIYVGNLVYSAT---SEQVKELFSQF--GKVFNVKLIYDR--------------------------------------- 37 (90)
T ss_dssp EEEEEEEECTTSS---HHHHTTTHHHH--TCCSEEEECCCS---------------------------------------
T ss_pred cEEEECCCCCCCC---HHHHHHHHHhc--CCEEEEEEEEcC---------------------------------------
Confidence 5899999999766 47899999988 567777665431
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCCC
Q 006191 270 YGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEP 331 (657)
Q Consensus 270 ~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P 331 (657)
...++.|.|||+|++.+ |..|.+.++.. +...+.|+.|..+
T Consensus 38 --------------------~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 38 --------------------ETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp --------------------SSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred --------------------CCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 00123689999999999 99998876654 3455667766543
No 62
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.58 E-value=0.0058 Score=50.17 Aligned_cols=76 Identities=13% Similarity=0.153 Sum_probs=54.5
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....++|.|.|||.+.+ .++|+++|++. .+.++.+.+|.
T Consensus 7 ~~~~~~l~v~nLp~~~t---~~~l~~~F~~~---~i~~v~i~~~~----------------------------------- 45 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVT---EKNVMEFLAPL---KPVAIRIVRNA----------------------------------- 45 (91)
T ss_dssp CCCCCEEEEECCCSSCC---HHHHHHHHTTS---CCSEEEEEECT-----------------------------------
T ss_pred CCCccEEEEECCCCCCC---HHHHHHHHhhC---CceEEEEEECC-----------------------------------
Confidence 45678999999999766 47899999887 36666665430
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 328 (657)
..++.|.|||+|++.++|+.|.+ ++.. +...+.|..|
T Consensus 46 -------------------------~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 46 -------------------------HGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp -------------------------TSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred -------------------------CCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 01236899999999999999999 6543 2344555544
No 63
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=96.58 E-value=0.0084 Score=53.03 Aligned_cols=78 Identities=12% Similarity=0.119 Sum_probs=57.8
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCh
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~ 266 (657)
...++|.|.|||.+.++ ++|+++|+++ |.|.++.+.+|-
T Consensus 44 ~~~~~l~V~nLp~~~te---~~L~~~F~~~--G~I~~v~i~~d~------------------------------------ 82 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTE---RDLREVFSKY--GPIADVSIVYDQ------------------------------------ 82 (129)
T ss_dssp CCSSCBCEETCTTSCCH---HHHHHHHTTT--SCEEEEEEECCS------------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecC------------------------------------
Confidence 45689999999997664 7899999987 667777776531
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeccC
Q 006191 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (657)
Q Consensus 267 i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~A 328 (657)
...+..|.|||+|++.++|..|.+.+.... ...+.|+.|
T Consensus 83 -----------------------~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 83 -----------------------QSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp -----------------------SSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred -----------------------CCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 001236899999999999999999776542 345666655
No 64
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.58 E-value=0.0081 Score=50.57 Aligned_cols=79 Identities=13% Similarity=0.192 Sum_probs=56.5
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....+||.|.|||.+.+ .++|+++|+++ + |.++.+.+|-
T Consensus 12 ~~~~~~l~V~nLp~~~t---~~~l~~~F~~~--g-i~~v~i~~~~----------------------------------- 50 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTV---QGDIDAIFKDL--S-IRSVRLVRDK----------------------------------- 50 (103)
T ss_dssp SSSCEEEEEESCCTTCC---HHHHHHHTTTS--C-EEEEEEEECS-----------------------------------
T ss_pred CCCCeEEEEeCCCCCCC---HHHHHHHHHhC--C-ceEEEEeecC-----------------------------------
Confidence 45678999999999776 47899999987 4 7787776541
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPE 330 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~ 330 (657)
...+..|.|||+|++.++|..|. .+... ....+.|+.|-+
T Consensus 51 ------------------------~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dng_A 51 ------------------------DTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEG 92 (103)
T ss_dssp ------------------------SSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCC
T ss_pred ------------------------CCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecC
Confidence 00123689999999999999999 44432 234556665543
No 65
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=96.58 E-value=0.0078 Score=51.79 Aligned_cols=95 Identities=8% Similarity=0.082 Sum_probs=65.1
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCh
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~ 266 (657)
...+||.|.|||.+.+ .+.|+++|+++ |.|.++.+.+|
T Consensus 6 ~~~~~l~V~nlp~~~t---~~~l~~~F~~~--G~v~~v~i~~~------------------------------------- 43 (115)
T 3lqv_A 6 EVNRILYIRNLPYKIT---AEEMYDIFGKY--GPIRQIRVGNT------------------------------------- 43 (115)
T ss_dssp TCCSEEEEESCCTTCC---HHHHHHHHHTT--SCEEEEEEECS-------------------------------------
T ss_pred CCCCEEEEeCCCCCCC---HHHHHHHHHhc--CCeEEEEEeeC-------------------------------------
Confidence 4567999999998766 47899999987 66777666432
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCCCCCcccCCCCCchH
Q 006191 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEPNDVYWPFFSASFM 344 (657)
Q Consensus 267 i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P~DIiW~NL~~~~~ 344 (657)
.+..|.|||+|.+.++|..|.+.++.. ....+.|+.|-++.+- +|+.....
T Consensus 44 -------------------------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~--~~~~~~~~ 96 (115)
T 3lqv_A 44 -------------------------PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRAF--QKMDTKKK 96 (115)
T ss_dssp -------------------------TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHHT--TTSCHHHH
T ss_pred -------------------------CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChhh--hhhhHhHh
Confidence 012589999999999999999977654 3456677766543322 55554444
Q ss_pred HHHHHH
Q 006191 345 RRWISK 350 (657)
Q Consensus 345 ~r~~R~ 350 (657)
+.-++.
T Consensus 97 ~~~l~~ 102 (115)
T 3lqv_A 97 EEQLKL 102 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 66
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=96.57 E-value=0.0074 Score=52.87 Aligned_cols=79 Identities=9% Similarity=0.081 Sum_probs=56.5
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....+||.|.|||.+.+ .+.|+++|+++ |.|.++.+.+|.
T Consensus 19 ~~~~~~l~V~nlp~~~t---~~~l~~~F~~~--G~i~~v~i~~~~----------------------------------- 58 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEAT---EEDIHDKFAEY--GEIKNIHLNLDR----------------------------------- 58 (126)
T ss_dssp CSSSEEEEEESCCTTCC---HHHHHHHHHTT--SCEEEEECCBCT-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCC---HHHHHHHHHhc--CCeEEEEEEecC-----------------------------------
Confidence 45578999999998766 47899999987 567666654431
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeccC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~A 328 (657)
...+..|.|||+|.+.++|..|.+.++... ...+.|+.|
T Consensus 59 ------------------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 59 ------------------------RTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp ------------------------TTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred ------------------------CCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 011236899999999999999998765442 344555544
No 67
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.56 E-value=0.0054 Score=51.10 Aligned_cols=81 Identities=14% Similarity=0.187 Sum_probs=56.2
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCh
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~ 266 (657)
...+||.|.|||.+.+ .++|+++|+++ |.|.++.+.+|..
T Consensus 3 ~~~~~l~V~nLp~~~t---~~~l~~~F~~~--G~i~~v~i~~~~~----------------------------------- 42 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTT---EETLKGVFSKV--GAIKSCTISKKKN----------------------------------- 42 (98)
T ss_dssp CCCCCEEEESCCTTCC---HHHHHHHHHTT--SCEEEEEEEEEEC-----------------------------------
T ss_pred CCCCEEEEeCCCCCCC---HHHHHHHHHhc--CCeEEEEEEecCC-----------------------------------
Confidence 3568999999999766 47899999987 5677777765420
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeccC
Q 006191 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (657)
Q Consensus 267 i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~A 328 (657)
+.. ..+..+.|||+|++.++|..|.+.++... ...+.|+.|
T Consensus 43 --------------------~~g-t~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (98)
T 2cpf_A 43 --------------------KAG-VLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRIS 85 (98)
T ss_dssp --------------------TTC-CEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECS
T ss_pred --------------------CCC-CcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 000 00236899999999999999999765432 234445443
No 68
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.55 E-value=0.0085 Score=50.66 Aligned_cols=85 Identities=16% Similarity=0.156 Sum_probs=57.4
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCccee-eEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLS-HTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKV 264 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~-v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kv 264 (657)
....++|.|.|||.+.+ .++|+++|+++ +.|.+ +.+.+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t---e~~l~~~F~~~--G~v~~~v~i~~~~---------------------------------- 52 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCS---KEEIVQFFSGL--EIVPNGMTLPVDF---------------------------------- 52 (104)
T ss_dssp CSCCCEEEEESCCTTCC---HHHHHHHTTTC--CEEEEEEECCBCS----------------------------------
T ss_pred CCCCCEEEEeCCCCCCC---HHHHHHHHHhc--CCcceeEEEEECC----------------------------------
Confidence 34578999999999776 47899999887 45544 4443320
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeccCCCCCCcccC
Q 006191 265 DLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAPEPNDVYWP 337 (657)
Q Consensus 265 d~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~AP~P~DIiW~ 337 (657)
..++.|.|||+|+++++|..|.+. .... ...+.|..| .+.++.|.
T Consensus 53 --------------------------~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~-~~~~~~~~ 99 (104)
T 1wg5_A 53 --------------------------QGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS-SRAEVRTS 99 (104)
T ss_dssp --------------------------SSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE-CTTTSCCS
T ss_pred --------------------------CCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC-CHHHHHHh
Confidence 112469999999999999999986 3322 244566555 34555443
No 69
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.53 E-value=0.0057 Score=51.83 Aligned_cols=63 Identities=16% Similarity=0.191 Sum_probs=50.4
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....+||.|.|+|.+.+ .+.|+++|+++ |.|.++.+.+|.
T Consensus 8 ~~~~~~lfV~~Lp~~~t---e~~L~~~F~~~--G~v~~v~i~~d~----------------------------------- 47 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDAT---LDDIKEWLEDK--GQVLNIQMRRTL----------------------------------- 47 (103)
T ss_dssp CSGGGCEEEECCCTTCC---HHHHHHHHHTS--SCEEEEEEECCC-----------------------------------
T ss_pred cCCCCEEEEECCCCCCC---HHHHHHHHhhc--CCEEEEEEEECC-----------------------------------
Confidence 35578999999999766 47899999987 678888776541
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHH
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFH 313 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q 313 (657)
. .++.|.|||+|++.++|..|.+
T Consensus 48 ------------------------~-g~~rG~aFV~F~~~e~a~~Ai~ 70 (103)
T 1s79_A 48 ------------------------H-KAFKGSIFVVFDSIESAKKFVE 70 (103)
T ss_dssp ------------------------T-TSCCCEEEEEESSHHHHHHHHT
T ss_pred ------------------------C-CCCccEEEEEECCHHHHHHHHH
Confidence 0 1236899999999999999988
No 70
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.51 E-value=0.0095 Score=51.05 Aligned_cols=36 Identities=17% Similarity=0.055 Sum_probs=26.5
Q ss_pred CCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCC
Q 006191 294 ELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (657)
Q Consensus 294 ~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 329 (657)
..|.|||+|.+.++|..|.+.++.. ....+.|+.|-
T Consensus 64 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (113)
T 2cpe_A 64 PKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR 101 (113)
T ss_dssp BCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSS
T ss_pred eeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECC
Confidence 4689999999999999999876543 23445555543
No 71
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.50 E-value=0.012 Score=49.17 Aligned_cols=73 Identities=19% Similarity=0.201 Sum_probs=53.2
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....+||.|.|||.+.+ .++|+++|+++.++.|.++.+
T Consensus 12 ~~~~~~l~V~nLp~~~t---~~~l~~~F~~~g~g~v~~~~~--------------------------------------- 49 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTS---EEMIEKEFNNIKPGAVERVKK--------------------------------------- 49 (99)
T ss_dssp SSCCCEEEEESCCTTCC---HHHHHHHHHTTSTTCEEEEEE---------------------------------------
T ss_pred cCCcCEEEEeCCCCCCC---HHHHHHHHHhcCCcceEEEEE---------------------------------------
Confidence 45678999999999766 478999999886655544321
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 328 (657)
..+.|||+|++.++|..|.+.++.. ....+.|+.|
T Consensus 50 ----------------------------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 50 ----------------------------IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp ----------------------------CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred ----------------------------eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 0369999999999999999876543 2344556555
No 72
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.49 E-value=0.0088 Score=51.31 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=51.3
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....+||.|.|||.+.+ .++|+++|+++ |.|.++.+.+|-
T Consensus 12 ~~~~~~l~V~nlp~~~~---~~~l~~~f~~~--G~i~~~~i~~~~----------------------------------- 51 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVG---WKKLKEVFSMA--GVVVRADILEDK----------------------------------- 51 (114)
T ss_dssp CCCCSCEEEESCCTTCC---HHHHHHHHTTT--SCEEEEEEEECT-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCC---HHHHHHHHHhc--CCeEEEEEEECC-----------------------------------
Confidence 44568999999999766 47899999987 567777665531
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhccc
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQS 317 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~ 317 (657)
+.+..+.|||+|++.++|..|.+.++.
T Consensus 52 -------------------------~g~~~g~afV~f~~~~~a~~A~~~l~g 78 (114)
T 2do0_A 52 -------------------------DGKSRGIGTVTFEQSIEAVQAISMFNG 78 (114)
T ss_dssp -------------------------TCSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred -------------------------CCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 011358999999999999999986654
No 73
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=96.48 E-value=0.004 Score=51.54 Aligned_cols=79 Identities=18% Similarity=0.229 Sum_probs=51.9
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
.+..++|.|.|||.+.+ .++|+++|+++ +.+.++.+..+.
T Consensus 12 ~~~~~~l~V~nlp~~~t---~~~l~~~F~~~--G~i~~~~~~~~~----------------------------------- 51 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVS---IDEILDFFYGY--QVIPGSVCLKYN----------------------------------- 51 (95)
T ss_dssp ---CEEEEEECCCTTCC---HHHHHHHTTTS--CBCTTCCEEEEC-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCC---HHHHHHHHHhc--CCccceEEEEeC-----------------------------------
Confidence 34568999999999766 47899999887 444333332210
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 328 (657)
...+..+.|||+|+++++|..|.+.++.. +...+.|+.|
T Consensus 52 ------------------------~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 52 ------------------------EKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp ------------------------TTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred ------------------------CCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 01123689999999999999999876543 2344555554
No 74
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=96.48 E-value=0.0063 Score=47.85 Aligned_cols=32 Identities=16% Similarity=0.413 Sum_probs=24.0
Q ss_pred EEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEE
Q 006191 191 TVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVI 227 (657)
Q Consensus 191 TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 227 (657)
+|.|.|||.+.+ .++|+++|++. |.+.++.+.
T Consensus 1 ~l~v~nlp~~~t---~~~l~~~F~~~--G~i~~v~i~ 32 (75)
T 2mss_A 1 KIFVGGLSVNTT---VEDVKHYFEQF--GKVDDAMLM 32 (75)
T ss_dssp CEEEECCCSSCC---HHHHHHHHHTT--SCCSEECCC
T ss_pred CEEEecCCCCCC---HHHHHHHHHhc--CCEEEEEEE
Confidence 478999999766 47899999987 556565443
No 75
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.47 E-value=0.016 Score=47.42 Aligned_cols=72 Identities=14% Similarity=0.261 Sum_probs=53.1
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....+||.|.|||.+.+ .++|+++|+++ |.|.++.+.
T Consensus 5 ~~~~~~l~V~nlp~~~t---~~~l~~~F~~~--G~i~~v~~~-------------------------------------- 41 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREAT---EQEIRSLFEQY--GKVLECDII-------------------------------------- 41 (90)
T ss_dssp SSCCEEEEEESCCSSCC---HHHHHHHHHTS--SCEEEEEEE--------------------------------------
T ss_pred CCCCeEEEEeCCCCCCC---HHHHHHHHHhC--CCEEEEEEE--------------------------------------
Confidence 35678999999999766 47899999887 455554431
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 329 (657)
.+.|||+|++.++|..|.+.++.. +...+.|+.|-
T Consensus 42 -----------------------------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 42 -----------------------------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp -----------------------------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred -----------------------------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 158999999999999999876543 34556666553
No 76
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.46 E-value=0.0078 Score=48.60 Aligned_cols=67 Identities=13% Similarity=0.185 Sum_probs=51.1
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCh
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~ 266 (657)
...+||.|.|||.+.++ ++|+++|+++ |.|.++.+.+|..
T Consensus 3 ~~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~i~~~~i~~~~~----------------------------------- 42 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTD---QDLVKLCQPY--GKIVSTKAILDKT----------------------------------- 42 (85)
T ss_dssp CCCCEEEEESCCTTCCH---HHHHTTSTTT--SCEEEEEEECCSS-----------------------------------
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecCC-----------------------------------
Confidence 34679999999997664 7899999987 5677777655310
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhccc
Q 006191 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQS 317 (657)
Q Consensus 267 i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~ 317 (657)
..+..|.|||+|++.++|..|.+.++.
T Consensus 43 ------------------------~~~~~g~afV~f~~~~~a~~A~~~l~g 69 (85)
T 1x4e_A 43 ------------------------TNKCKGYGFVDFDSPSAAQKAVTALKA 69 (85)
T ss_dssp ------------------------SCSCCSEEEEEESCHHHHHHHHHHHHH
T ss_pred ------------------------CCCcCcEEEEEECCHHHHHHHHHHhcC
Confidence 012368999999999999999987654
No 77
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.45 E-value=0.015 Score=48.12 Aligned_cols=77 Identities=14% Similarity=0.162 Sum_probs=56.4
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceee-EEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSH-TVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v-~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
...++|.|.|||.+.+ .+.|+++|+++ |.|.++ .+.+|
T Consensus 13 ~~~~~l~V~nlp~~~t---~~~l~~~F~~~--G~v~~~~~i~~~------------------------------------ 51 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQ---WEVLDSLLVQY--GVVESCEQVNTD------------------------------------ 51 (96)
T ss_dssp CSCCCEEEEEECSSSC---HHHHHHHHHHH--SCEEEEEEECCS------------------------------------
T ss_pred CCCCEEEEEcCCCCCC---HHHHHHHHHhc--CCeEEEEEeecC------------------------------------
Confidence 3468999999999766 47899999988 556665 34321
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEP 331 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P 331 (657)
+.++.|||+|.+.++|..|.+.+... +...+.|+.|.+.
T Consensus 52 ---------------------------~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 52 ---------------------------SETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp ---------------------------SSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred ---------------------------CCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 11344999999999999999876554 3466788887654
No 78
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.45 E-value=0.011 Score=50.29 Aligned_cols=74 Identities=11% Similarity=0.139 Sum_probs=55.0
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
.+...+|.|.|||.+.++ ++|+++|+++ |.|.++.+.++
T Consensus 13 ~~~~~~LfV~nLp~~vte---~dL~~lF~~f--G~V~~v~i~~~------------------------------------ 51 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTE---GEVISLGLPF--GKVTNLLMLKG------------------------------------ 51 (105)
T ss_dssp CCCCCEEEECSCCTTSCH---HHHHHHHHHH--CCEEEEEEETT------------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEcC------------------------------------
Confidence 456789999999997664 7899999988 67777765320
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC----CCCCceeccCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST----NPTDWLLEQAP 329 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~----~~~~~~v~~AP 329 (657)
.|.|||+|++.++|..|.+.+... ....+.|+.|.
T Consensus 52 -----------------------------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 52 -----------------------------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp -----------------------------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred -----------------------------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 279999999999999999865432 23455666654
No 79
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=96.44 E-value=0.0093 Score=50.17 Aligned_cols=74 Identities=16% Similarity=0.182 Sum_probs=54.6
Q ss_pred CCCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccC
Q 006191 185 PQPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKV 264 (657)
Q Consensus 185 ~~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kv 264 (657)
..+.+++|.|+|+|.+.+ +++|++.|+++ |.|.++.+.+
T Consensus 17 ~~~ps~~l~V~NLp~~~t---e~~L~~lF~~f--G~V~~v~i~~------------------------------------ 55 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVV---EADLVEALQEF--GPISYVVVMP------------------------------------ 55 (100)
T ss_dssp CCCCCSEEEEESCCTTCC---HHHHHHHHGGG--SCEEEEEEET------------------------------------
T ss_pred cCCCCcEEEEeCCCCCCC---HHHHHHHHhcc--CCEEEEEEEc------------------------------------
Confidence 456678999999998765 47899999987 6676665421
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC----CCCceeccC
Q 006191 265 DLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN----PTDWLLEQA 328 (657)
Q Consensus 265 d~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~----~~~~~v~~A 328 (657)
..|.|||.|++.++|..|.+.+.... ...+.|+.|
T Consensus 56 -----------------------------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 56 -----------------------------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp -----------------------------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred -----------------------------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 12799999999999999998765432 344555554
No 80
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=96.43 E-value=0.0073 Score=53.83 Aligned_cols=67 Identities=15% Similarity=0.125 Sum_probs=50.4
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCh
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~ 266 (657)
...+||.|.|||.+.+ .++|+++|+++ |.|.++.+.+|.
T Consensus 61 ~~~~~l~v~nlp~~~~---~~~l~~~f~~~--G~i~~v~i~~~~------------------------------------ 99 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVD---DKVLHAAFIPF--GDITDIQIPLDY------------------------------------ 99 (140)
T ss_dssp SSCCEEEEECCCTTCC---HHHHHHHHGGG--SCEEEEECCCCT------------------------------------
T ss_pred CCCcEEEEEeCCCCCC---HHHHHHHHHhc--CCEEEEEEeecC------------------------------------
Confidence 4568999999999766 47899999988 566666554320
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhccc
Q 006191 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQS 317 (657)
Q Consensus 267 i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~ 317 (657)
...+..|.|||+|++.++|..|.+.++.
T Consensus 100 -----------------------~~~~~~g~afV~f~~~~~a~~A~~~l~g 127 (140)
T 2ku7_A 100 -----------------------ETEKHRGFAFVEFELAEDAAAAIDNMNE 127 (140)
T ss_dssp -----------------------TTCCCCSEEEEEESCHHHHHHHHHHSTE
T ss_pred -----------------------CCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 0112468999999999999999987654
No 81
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=96.43 E-value=0.01 Score=50.50 Aligned_cols=79 Identities=13% Similarity=0.116 Sum_probs=53.6
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCC-CcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHP-TTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKV 264 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p-~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kv 264 (657)
....++|.|.|||.+.++ ++|+++|+++.+ +.|.++.+.+|-
T Consensus 8 ~~~~~~l~V~nLp~~~te---~~l~~~F~~~g~~~~v~~v~i~~~~---------------------------------- 50 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTM---EDVLNFFSDCRIRNGENGIHFLLNR---------------------------------- 50 (107)
T ss_dssp CSSCCEEEEECCCSSCCS---HHHHHHTTTSCBTTTTTTEECCCCT----------------------------------
T ss_pred CCCccEEEEeCCCCCCCH---HHHHHHHHhcCCcCCcceEEEEECC----------------------------------
Confidence 456789999999998765 789999987632 125555554321
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeccC
Q 006191 265 DLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (657)
Q Consensus 265 d~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~A 328 (657)
. .++.|.|||+|.+.++|..|.+ +.... ...+.|..|
T Consensus 51 -------------------------~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a 89 (107)
T 2lmi_A 51 -------------------------D-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEI 89 (107)
T ss_dssp -------------------------T-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEEC
T ss_pred -------------------------C-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEEC
Confidence 0 1246999999999999999998 43322 233444444
No 82
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=96.43 E-value=0.0074 Score=50.61 Aligned_cols=80 Identities=10% Similarity=0.206 Sum_probs=54.0
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....+||.|.|||.+.++ ++|+++|+++ | |.++.+.+|-+
T Consensus 16 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G-i~~v~i~~~~~---------------------------------- 55 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTE---ESIKEFFRGL--N-ISAVRLPREPS---------------------------------- 55 (100)
T ss_dssp ----CEEEESCCSSCCSS---SHHHHHSCSS--C-EEEEECSCCTT----------------------------------
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHhc--C-CeEEEEEecCC----------------------------------
Confidence 456789999999997665 6799999887 5 77776644310
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPE 330 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~ 330 (657)
...+..|.|||+|++.++|..|. .+... +...+.|+.|-+
T Consensus 56 ------------------------~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~ 97 (100)
T 2j76_E 56 ------------------------NPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQ 97 (100)
T ss_dssp ------------------------TTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCC
T ss_pred ------------------------cCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccC
Confidence 01224689999999999999999 55443 234566666643
No 83
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.41 E-value=0.01 Score=47.78 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=27.7
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEE
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTV 226 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~ 226 (657)
.+..+||.|.|||.+.+ .++|+++|+++ |.|.++.+
T Consensus 9 ~~~~~~l~V~~l~~~~t---~~~l~~~f~~~--G~i~~~~~ 44 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTIT---ETDLRNHFYQF--GEIRTITV 44 (85)
T ss_dssp CSSCCCEEEECCTTTSC---HHHHHHHHHTT--SCEEEEEE
T ss_pred CCCccEEEEcCCCCCCC---HHHHHHHHHhC--CCEeEEEE
Confidence 45678999999999765 47899999987 55666554
No 84
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.41 E-value=0.015 Score=49.31 Aligned_cols=74 Identities=14% Similarity=0.074 Sum_probs=53.9
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
.+..++|.|.|||.+.+ .++|+++|+++ |.|.++.+..
T Consensus 12 ~~p~~~l~V~nLp~~~t---e~~L~~~F~~f--G~V~~v~i~~------------------------------------- 49 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVV---EADLVEALEKF--GTICYVMMMP------------------------------------- 49 (104)
T ss_dssp CCCCSEEEEESCCSSCC---HHHHHHHHTTT--SCEEEEEEET-------------------------------------
T ss_pred CCCCCEEEEeCCCCCCC---HHHHHHHHHhC--CCEEEEEEEC-------------------------------------
Confidence 45578999999998765 47899999987 6666655421
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC----CCCCceeccCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST----NPTDWLLEQAP 329 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~----~~~~~~v~~AP 329 (657)
. .|.|||+|++.++|..|.+.++.. +...+.|+.|-
T Consensus 50 --------------------------~--kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 50 --------------------------F--KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp --------------------------T--TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred --------------------------C--CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 0 279999999999999998865432 33455666553
No 85
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=96.41 E-value=0.0026 Score=57.01 Aligned_cols=78 Identities=18% Similarity=0.212 Sum_probs=55.5
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCC-cceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPT-TYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~-~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
...++|.|.|||.+.++ ++|+++|+++.+. .|.++.+++|-
T Consensus 42 ~~~~~lfVgnLp~~~te---~dL~~~F~~~G~v~~v~~v~i~~d~----------------------------------- 83 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSV---EDVQNFLSDCTIHDGAAGVHFIYTR----------------------------------- 83 (136)
T ss_dssp CTTCEEEEESCCTTCCH---HHHHHHTTTCCCSSSSTTEEEEECS-----------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHhCCcCceeEEEEEECC-----------------------------------
Confidence 45689999999997764 7899999987321 16677776541
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 328 (657)
. .++.|.|||+|+++++|..|.+ +... +...+.|..|
T Consensus 84 ------------------------~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a 122 (136)
T 2hgl_A 84 ------------------------E-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKS 122 (136)
T ss_dssp ------------------------S-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEEC
T ss_pred ------------------------C-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEEC
Confidence 0 1236899999999999999998 4432 2345566665
No 86
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.37 E-value=0.015 Score=49.79 Aligned_cols=68 Identities=13% Similarity=0.272 Sum_probs=51.9
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
.....+|.|.|||.+.+ .++|+++|+++ |.|.++.+.+|.
T Consensus 22 ~~~~~~l~V~nlp~~~t---~~~l~~~F~~~--G~i~~~~i~~~~----------------------------------- 61 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMD---EQELENMLKPF--GQVISTRILRDS----------------------------------- 61 (114)
T ss_dssp CCCTTEEEEESCCTTCC---HHHHHHTTTTT--SCEEEEEEEECS-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCC---HHHHHHHHHhc--CCEEEEEEEECC-----------------------------------
Confidence 34568999999999766 47899999987 567777765531
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST 318 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~ 318 (657)
..+..|.|||+|.+.++|..|.+.++..
T Consensus 62 -------------------------~g~~~g~afV~f~~~~~a~~A~~~l~g~ 89 (114)
T 1x5o_A 62 -------------------------SGTSRGVGFARMESTEKCEAVIGHFNGK 89 (114)
T ss_dssp -------------------------SSCEEEEEEEEESCHHHHHHHHHHHBTC
T ss_pred -------------------------CCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 0112589999999999999999976543
No 87
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=96.36 E-value=0.011 Score=54.42 Aligned_cols=103 Identities=16% Similarity=0.241 Sum_probs=69.9
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChH
Q 006191 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (657)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i 267 (657)
.++||.|.|||.+.++ ++|+++|+++ |.|.++.+.+|.. +.
T Consensus 2 ~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~~~-----------------------------~~----- 42 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSE---KDLRELFEQY--GAVYEINVLRDRS-----------------------------QN----- 42 (175)
T ss_dssp CCEEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEEECS-----------------------------SS-----
T ss_pred CceEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEecCC-----------------------------CC-----
Confidence 4689999999997764 7899999987 5687877765410 00
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC-----CCCceeccC-------CCCCCcc
Q 006191 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN-----PTDWLLEQA-------PEPNDVY 335 (657)
Q Consensus 268 ~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~-----~~~~~v~~A-------P~P~DIi 335 (657)
..+..|.|||+|.+.++|..|.+.++... ...+.+..+ ++...|.
T Consensus 43 -----------------------~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 99 (175)
T 3nmr_A 43 -----------------------PPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLF 99 (175)
T ss_dssp -----------------------SCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCSCGGGSEEE
T ss_pred -----------------------CCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccccccCCCCeEE
Confidence 01236899999999999999998765432 222333322 2344577
Q ss_pred cCCCCCchHHHHHHHHH
Q 006191 336 WPFFSASFMRRWISKIV 352 (657)
Q Consensus 336 W~NL~~~~~~r~~R~~~ 352 (657)
=.||..+..+..++.++
T Consensus 100 v~nl~~~~t~~~l~~~F 116 (175)
T 3nmr_A 100 IGMISKKCTENDIRVMF 116 (175)
T ss_dssp EESCCTTCCHHHHHHHH
T ss_pred EcCCCCcCCHHHHHHHH
Confidence 78888776666666543
No 88
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=96.36 E-value=0.012 Score=53.52 Aligned_cols=96 Identities=10% Similarity=0.130 Sum_probs=64.2
Q ss_pred eEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChHHH
Q 006191 190 FTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVDH 269 (657)
Q Consensus 190 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i~~ 269 (657)
+||.|.|||.+.+ .++|+++|+++ |.|.++.+.+|-
T Consensus 1 R~l~V~nlp~~~t---~~~l~~~f~~~--G~i~~v~i~~~~--------------------------------------- 36 (166)
T 3md3_A 1 RVLYVGNLDKAIT---EDILKQYFQVG--GPIANIKIMIDK--------------------------------------- 36 (166)
T ss_dssp CEEEEEEEETTCC---HHHHHHHHGGG--SCEEEEEEECCC---------------------------------------
T ss_pred CEEEECCCCCcCC---HHHHHHHHHhc--CCeEEEEEEECC---------------------------------------
Confidence 6899999999776 47899999988 567777775431
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeccCC--------CCCCcccCCC
Q 006191 270 YGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAP--------EPNDVYWPFF 339 (657)
Q Consensus 270 ~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~AP--------~P~DIiW~NL 339 (657)
+.+..|.|||+|.+.++|..|.+.++... ...+.++.|. +...+.=.||
T Consensus 37 ---------------------~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl 95 (166)
T 3md3_A 37 ---------------------NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDL 95 (166)
T ss_dssp ---------------------C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCCCCTTCEEEEEESC
T ss_pred ---------------------CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCCCCCCCceEEECCC
Confidence 01236899999999999999997665432 2233343332 2223556677
Q ss_pred CCchHHHHHHH
Q 006191 340 SASFMRRWISK 350 (657)
Q Consensus 340 ~~~~~~r~~R~ 350 (657)
.....+..++.
T Consensus 96 ~~~~t~~~l~~ 106 (166)
T 3md3_A 96 NVNVDDETLRN 106 (166)
T ss_dssp CTTCCHHHHHH
T ss_pred CCCCCHHHHHH
Confidence 66655555554
No 89
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.34 E-value=0.0069 Score=51.93 Aligned_cols=83 Identities=13% Similarity=0.125 Sum_probs=58.3
Q ss_pred CCcceEEEEeccCCCCCCchHHHHH---HHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCc
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVE---NFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQR 262 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~---~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~ 262 (657)
.....+|.|.|||.+.++ ++|+ ++|+++ |.|.++.+..|...
T Consensus 12 ~~~~~~l~V~nLp~~~~~---~~l~~~~~~F~~~--G~i~~v~i~~~~~~------------------------------ 56 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLAD---PEVLKRPEYFGKF--GKIHKVVINNSTSY------------------------------ 56 (111)
T ss_dssp CCCSSCEEEEEECTTTCC---HHHHHSTTTTTTT--SCEEEEEEECCSSC------------------------------
T ss_pred ccCCCEEEEECCCCCCCH---HHHHHHHHHhhcc--CCEEEEEEecCCCc------------------------------
Confidence 345689999999997765 6787 999887 67778777554200
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCC
Q 006191 263 KVDLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (657)
Q Consensus 263 kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 329 (657)
....++.|.|||+|++.++|+.|.+.++.. ....+.|+.|-
T Consensus 57 --------------------------~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~ 99 (111)
T 2cpi_A 57 --------------------------AGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGT 99 (111)
T ss_dssp --------------------------CSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCC
T ss_pred --------------------------CccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEecc
Confidence 000123689999999999999999976543 23456666553
No 90
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=96.34 E-value=0.0041 Score=52.29 Aligned_cols=80 Identities=11% Similarity=0.093 Sum_probs=56.2
Q ss_pred cceEEEEeccCCCCC---CchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccC
Q 006191 188 HQFTVLVRSIPVSAG---STIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKV 264 (657)
Q Consensus 188 ~~~TVlV~~IP~~~~---~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kv 264 (657)
.+.||.|.|||...+ +...+.|+++|+++ |.|.++.+.+|.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~--G~i~~v~i~~d~---------------------------------- 48 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKA--GKVVNMEFPIDE---------------------------------- 48 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTT--SCEEEEECCEET----------------------------------
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhc--CCEeEEEEEEcC----------------------------------
Confidence 367999999998111 23357899999987 667777665531
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--C-CCceeccC
Q 006191 265 DLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--P-TDWLLEQA 328 (657)
Q Consensus 265 d~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~--~-~~~~v~~A 328 (657)
...++.|.|||+|.+.++|+.|.+.+.... . ..+.|..|
T Consensus 49 -------------------------~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a 90 (100)
T 3ns6_A 49 -------------------------ATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTM 90 (100)
T ss_dssp -------------------------TTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEES
T ss_pred -------------------------CCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEEC
Confidence 001236999999999999999998776542 3 45666665
No 91
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.34 E-value=0.016 Score=49.36 Aligned_cols=75 Identities=20% Similarity=0.172 Sum_probs=55.2
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
.+..+||.|.|||.+.+ .+.|+++|+++ |.|.++.+.++
T Consensus 22 ~~~~~~l~V~nl~~~~t---~~~l~~~F~~~--G~i~~v~i~~~------------------------------------ 60 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLT---DQLMRQTFSPF--GQIMEIRVFPE------------------------------------ 60 (109)
T ss_dssp CSSCCEEEEECCSSCCC---HHHHHHHHHHH--SCEEEEEEETT------------------------------------
T ss_pred CCCCcEEEEeCCCCCCC---HHHHHHHHHhc--CCeEEEEEeCC------------------------------------
Confidence 34578999999999766 47899999988 56666655320
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPE 330 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~ 330 (657)
.|.|||+|++.++|..|.+.++.. ....+.|+.|-+
T Consensus 61 -----------------------------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 61 -----------------------------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp -----------------------------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred -----------------------------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 379999999999999999876543 234456665543
No 92
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=96.33 E-value=0.0045 Score=48.68 Aligned_cols=60 Identities=12% Similarity=0.211 Sum_probs=44.4
Q ss_pred EEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChHHHH
Q 006191 191 TVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVDHY 270 (657)
Q Consensus 191 TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i~~~ 270 (657)
||.|.|||.+.+ .++|+++|+++ |.+.++.+.+|.
T Consensus 1 ~l~v~nLp~~~t---~~~l~~~F~~~--G~i~~v~i~~~~---------------------------------------- 35 (75)
T 1iqt_A 1 KIFVGGLSPDTP---EEKIREYFGGF--GEVESIELPMDN---------------------------------------- 35 (75)
T ss_dssp CEEESCCCSSCC---HHHHHHHHHHH--SCCSEECCCCSC----------------------------------------
T ss_pred CEEEeCCCCCCC---HHHHHHHHHhc--CCeEEEEEEecC----------------------------------------
Confidence 688999999766 47899999988 456555443320
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHh
Q 006191 271 GKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHM 314 (657)
Q Consensus 271 ~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~ 314 (657)
...++.|.|||+|++.++|..|.+.
T Consensus 36 -------------------~~~~~~g~afV~f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 36 -------------------KTNKRRGFCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp -------------------CCSSSCCCEEEECSSSHHHHHHHTT
T ss_pred -------------------CCCCcCCEEEEEECCHHHHHHHHHh
Confidence 0112468999999999999999885
No 93
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.32 E-value=0.013 Score=50.33 Aligned_cols=80 Identities=9% Similarity=0.067 Sum_probs=58.7
Q ss_pred CcceEEEEeccCCC-CCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 187 PHQFTVLVRSIPVS-AGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 187 ~~~~TVlV~~IP~~-~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
...++|.|.|||.+ .++ ++|+++|+++ |.|.++.+.+
T Consensus 23 ~p~~~l~V~NLp~~~~te---~~L~~lF~~f--G~V~~v~i~~------------------------------------- 60 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSD---SAVLKLAEPY--GKIKNYILMR------------------------------------- 60 (112)
T ss_dssp CCCCEEEEESCCCSSCCS---HHHHTTTTTT--SCCSEEEEET-------------------------------------
T ss_pred CCCCEEEEeCCCCccCCH---HHHHHHHHhc--CCEEEEEEec-------------------------------------
Confidence 45689999999997 665 7899999987 5676665521
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC----CCCCceeccCCCCCCccc
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST----NPTDWLLEQAPEPNDVYW 336 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~----~~~~~~v~~AP~P~DIiW 336 (657)
..|.|||+|++.++|..|.+.++.. ....+.|+.|-...++.+
T Consensus 61 ----------------------------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~~~~ 107 (112)
T 1x4f_A 61 ----------------------------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKLVS 107 (112)
T ss_dssp ----------------------------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSSSSC
T ss_pred ----------------------------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcccccccc
Confidence 1379999999999999999876422 345677777765555543
No 94
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.31 E-value=0.015 Score=47.52 Aligned_cols=73 Identities=12% Similarity=0.211 Sum_probs=53.3
Q ss_pred CCCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccC
Q 006191 185 PQPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKV 264 (657)
Q Consensus 185 ~~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kv 264 (657)
.....++|.|.|||.+.+ .++|+++|+++ |.|.++.+.
T Consensus 5 ~~~~~~~l~V~nlp~~~t---~~~l~~~F~~~--G~v~~~~~~------------------------------------- 42 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACT---SQELRSLFERR--GRVIECDVV------------------------------------- 42 (90)
T ss_dssp SSCCSCCEEEESCCTTCC---HHHHHHHHHHH--SCEEEEEEC-------------------------------------
T ss_pred CCCCCCEEEEeCCCCCCC---HHHHHHHHHcC--CCEEEEEEE-------------------------------------
Confidence 345678999999999766 47899999988 455555441
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCC
Q 006191 265 DLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (657)
Q Consensus 265 d~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 329 (657)
.+.|||+|++.++|..|.+.++.. +...+.|+.|-
T Consensus 43 ------------------------------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 43 ------------------------------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp ------------------------------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred ------------------------------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 138999999999999999876543 23455666553
No 95
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.28 E-value=0.016 Score=48.16 Aligned_cols=78 Identities=15% Similarity=0.057 Sum_probs=55.2
Q ss_pred CCCcceEEEEeccCCCCCCchHHHHH----HHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 006191 185 PQPHQFTVLVRSIPVSAGSTIGDTVE----NFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQ 260 (657)
Q Consensus 185 ~~~~~~TVlV~~IP~~~~~~~~~~l~----~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~ 260 (657)
......+|.|.|||.+.++ ++|+ ++|+++ |.|.++.+.+|.
T Consensus 5 ~~~~~~~l~V~nL~~~~~~---~~l~~~l~~~F~~~--G~v~~v~i~~~~------------------------------ 49 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSR---KELQQLLQEAFARH--GKVKSVELSPHT------------------------------ 49 (96)
T ss_dssp CCSSCEEEEEESCCTTSCH---HHHHHHHHHHHHHH--SCEEEEEECSCC------------------------------
T ss_pred CCCCCCEEEEECCCCCCCH---HHHHHHHHHhcccc--CcEEEEEEEeCC------------------------------
Confidence 3456689999999986553 5565 999988 667777664431
Q ss_pred CccCChHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCC
Q 006191 261 QRKVDLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (657)
Q Consensus 261 g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 329 (657)
. . .+.|||+|++.++|+.|.+.++.. ....++|+.|-
T Consensus 50 -----------------------------~-~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~ 88 (96)
T 2dgx_A 50 -----------------------------D-Y--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLAT 88 (96)
T ss_dssp -----------------------------S-T--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred -----------------------------C-C--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 0 0 368999999999999999876543 34456666553
No 96
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.28 E-value=0.017 Score=47.90 Aligned_cols=74 Identities=11% Similarity=0.071 Sum_probs=54.1
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
.+...+|.|.|||.+.+ .++|+++|+++ +.|.++.+..
T Consensus 14 ~~~~~~l~V~nlp~~~t---~~~l~~~F~~~--G~v~~v~~~~------------------------------------- 51 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTS---LAALAREFDRF--GSIRTIDHVK------------------------------------- 51 (97)
T ss_dssp CCCCSCEEEECCCSSCC---HHHHHHHHHTT--SCEEEEEECS-------------------------------------
T ss_pred CCCCCEEEEeCCCCCCC---HHHHHHHHHhc--CCeeEEEEeC-------------------------------------
Confidence 34568999999999766 47899999987 5555543310
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--C--CCCceeccCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--N--PTDWLLEQAP 329 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~--~~~~~v~~AP 329 (657)
. .+.|||+|++.++|+.|.+.++.. . ...+.|+.|-
T Consensus 52 --------------------------~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 52 --------------------------G--DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp --------------------------S--SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred --------------------------C--CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 0 369999999999999999876543 2 4566777653
No 97
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.27 E-value=0.018 Score=47.18 Aligned_cols=72 Identities=14% Similarity=0.168 Sum_probs=52.2
Q ss_pred CCCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccC
Q 006191 185 PQPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKV 264 (657)
Q Consensus 185 ~~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kv 264 (657)
.....++|.|.|||.+.+ .++|+++|+++ |.|.++.+.
T Consensus 6 ~~~~~~~l~V~nLp~~~t---~~~l~~~F~~~--G~v~~v~~~------------------------------------- 43 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCT---NQELRAKFEEY--GPVIECDIV------------------------------------- 43 (92)
T ss_dssp CCCSSEEEEEESCCSSCC---HHHHHHHHHTT--SCCCEEEEC-------------------------------------
T ss_pred CCCCCCEEEEeCCCCCCC---HHHHHHHHHhc--CCeEEEEEE-------------------------------------
Confidence 345678999999999766 47899999987 455554431
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccC
Q 006191 265 DLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (657)
Q Consensus 265 d~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 328 (657)
.+.|||+|++.++|..|.+.++.. +...+.|+.|
T Consensus 44 ------------------------------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 44 ------------------------------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp ------------------------------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred ------------------------------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 138999999999999999876543 2344555555
No 98
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=96.26 E-value=0.014 Score=54.72 Aligned_cols=85 Identities=18% Similarity=0.191 Sum_probs=61.5
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCh
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~ 266 (657)
....||.|.|||.+.+ .++|+++|+++ |.|.++.+.+|-
T Consensus 86 ~~~~~l~V~nLp~~~t---e~~L~~~F~~~--G~I~~v~i~~d~------------------------------------ 124 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVS---DADIQELFAEF--GTLKKAAVDYDR------------------------------------ 124 (177)
T ss_dssp TTCEEEEEECCCSCCC---HHHHHHHHHHT--SCCSEEEECCCT------------------------------------
T ss_pred CCCCEEEEeCCCCCCC---HHHHHHHHHhc--CCeEEEEEEECC------------------------------------
Confidence 4568999999998766 47899999987 567777664431
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCCCCCccc
Q 006191 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEPNDVYW 336 (657)
Q Consensus 267 i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P~DIiW 336 (657)
..+..|.|||+|.+.++|..|.+.+... +...+.|+.|..+....|
T Consensus 125 ------------------------~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~~~~~ 172 (177)
T 2f3j_A 125 ------------------------SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDLEH 172 (177)
T ss_dssp ------------------------TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSGGGGCC
T ss_pred ------------------------CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCCC
Confidence 0123689999999999999999976554 345677777765444333
No 99
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.25 E-value=0.0084 Score=50.63 Aligned_cols=77 Identities=17% Similarity=0.135 Sum_probs=53.5
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....++|.|.|||.+.+ .++|+++|+++ + ++++.+++|-
T Consensus 12 ~~~~~~l~V~nLp~~~t---e~~l~~~F~~~--G-~~~v~i~~d~----------------------------------- 50 (102)
T 1wez_A 12 STTGHCVHMRGLPYRAT---ENDIYNFFSPL--N-PMRVHIEIGP----------------------------------- 50 (102)
T ss_dssp CSSSCEEEEESCCTTCC---HHHHHHSSCSC--C-CSEEEEEESS-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCC---HHHHHHHHHHc--C-ceEEEEEECC-----------------------------------
Confidence 34568999999999776 48899999887 3 3377665531
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 329 (657)
+.++.|.|||+|+++++|+.|.+. ... ....+.|..|.
T Consensus 51 -------------------------~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 51 -------------------------DGRVTGEADVEFATHEDAVAAMAK-DKANMQHRYVELFLNS 90 (102)
T ss_dssp -------------------------SSCEEEEEEEECSSSHHHHHHHTT-SSCCSSSSCCEEEEEC
T ss_pred -------------------------CCCEeeEEEEEECCHHHHHHHHHh-CCCeECCcEEEEEECC
Confidence 012368999999999999999964 322 12345555544
No 100
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=96.24 E-value=0.0056 Score=50.30 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=27.0
Q ss_pred CCCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEE
Q 006191 185 PQPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTV 226 (657)
Q Consensus 185 ~~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~ 226 (657)
..++.+|+.|.|||.+.++ +.|+++|+++ |.|.++.+
T Consensus 7 ~~~~~~~l~V~~Lp~~~te---~~L~~~F~~~--G~i~~v~i 43 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTA---EELQQFFCQY--GEVVDVFI 43 (89)
T ss_dssp ----CCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHhcc--CCEEEEEE
Confidence 3567789999999998764 7899999987 56666544
No 101
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=96.23 E-value=0.017 Score=48.79 Aligned_cols=81 Identities=10% Similarity=0.147 Sum_probs=57.9
Q ss_pred cceEEEEeccCCCCCCc---hHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccC
Q 006191 188 HQFTVLVRSIPVSAGST---IGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKV 264 (657)
Q Consensus 188 ~~~TVlV~~IP~~~~~~---~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kv 264 (657)
..+||.|.|||.+.++. ..+.|+++|+++ |.|.++.+.++
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~v~~v~i~~~----------------------------------- 56 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFYPEE----------------------------------- 56 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGG--SCEEEEECCCB-----------------------------------
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcC--CCEEEEEeeCC-----------------------------------
Confidence 36799999999865432 568899999987 55666544210
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCC-CceeccCCCC
Q 006191 265 DLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPT-DWLLEQAPEP 331 (657)
Q Consensus 265 d~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~-~~~v~~AP~P 331 (657)
..++.|.|||+|.+.++|+.|.+.+... ... .+.|+.|-+-
T Consensus 57 --------------------------~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 57 --------------------------DGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp --------------------------TTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred --------------------------CCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchH
Confidence 0123689999999999999999977643 333 6777777543
No 102
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.21 E-value=0.016 Score=48.80 Aligned_cols=74 Identities=9% Similarity=0.092 Sum_probs=53.5
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
.+...+|.|.|||.+.+ .++|+++|+++ |.|.++.+..+
T Consensus 12 ~~p~~~l~V~nLp~~~t---e~~L~~~F~~f--G~v~~v~i~~~------------------------------------ 50 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVT---ETEVIALGLPF--GKVTNILMLKG------------------------------------ 50 (101)
T ss_dssp SSCCSEEEEESCCTTCC---HHHHHHTTTTT--SCEEEEEEETT------------------------------------
T ss_pred CCCCCEEEEeCCCCCCC---HHHHHHHHHhc--CCEEEEEEECC------------------------------------
Confidence 45568999999998765 47899999987 66666544210
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC----CCCCceeccCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST----NPTDWLLEQAP 329 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~----~~~~~~v~~AP 329 (657)
.|.|||+|+++++|..|.+.++.. ....+.|+.|-
T Consensus 51 -----------------------------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 51 -----------------------------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp -----------------------------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred -----------------------------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 279999999999999998865422 23455666554
No 103
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.21 E-value=0.015 Score=49.45 Aligned_cols=73 Identities=15% Similarity=0.165 Sum_probs=53.7
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....++|.|.|||.+.+ .++|+++|+++ +.|.++.+.. |
T Consensus 12 ~~~~~~l~V~nLp~~~t---~~~l~~~F~~~--G~i~~~~i~~------------------------------------~ 50 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGS---WQDLKDHMREA--GDVCYADVYR------------------------------------D 50 (108)
T ss_dssp CSCCCEEEEESCCSSCC---HHHHHHHHGGG--SCEEEEEEET------------------------------------T
T ss_pred CCCCCEEEEeCCCCCCC---HHHHHHHHHhc--CCEeEEEEec------------------------------------C
Confidence 34578999999998766 48899999987 5565554421 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--C-----CCceeccCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--P-----TDWLLEQAP 329 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~--~-----~~~~v~~AP 329 (657)
+.|||+|++.++|+.|.+.+.... . ..+.|+.|-
T Consensus 51 ------------------------------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 51 ------------------------------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp ------------------------------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred ------------------------------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 799999999999999999765431 1 446666553
No 104
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.21 E-value=0.0076 Score=50.90 Aligned_cols=65 Identities=12% Similarity=0.248 Sum_probs=50.4
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....++|.|.|||.+.+ .++|+++|+++ |.|.++.+.+|-.
T Consensus 13 ~~~~~~l~V~nlp~~~t---~~~l~~~F~~~--G~v~~v~i~~~~~---------------------------------- 53 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTT---QETLRSYFSQY--GEVVDCVIMKDKT---------------------------------- 53 (105)
T ss_dssp SSSSSEECCBSCCTTCC---HHHHHHHHHTT--SCEEEEEEEECSS----------------------------------
T ss_pred CCCCCEEEEeCCCCCCC---HHHHHHHHHhc--CCeEEEEEeeCCC----------------------------------
Confidence 45678999999999766 47899999987 6777777765410
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHh
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHM 314 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~ 314 (657)
..+..|.|||+|++.++|+.|.+.
T Consensus 54 -------------------------~g~~~g~afV~f~~~~~a~~a~~~ 77 (105)
T 2dh8_A 54 -------------------------TNQSRGFGFVKFKDPNCVGTVLAS 77 (105)
T ss_dssp -------------------------SCCEEEEEEEEESSTTHHHHHHHH
T ss_pred -------------------------CCCcceEEEEEECCHHHHHHHHHh
Confidence 011358999999999999999886
No 105
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.20 E-value=0.0046 Score=50.48 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=26.2
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEE
Q 006191 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTV 226 (657)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~ 226 (657)
..+||.|.|||.+.++ ++|+++|+++ |.|.++.+
T Consensus 4 ~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i 37 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTE---DELREFFSQY--GDVMDVFI 37 (88)
T ss_dssp CCCEEEEESCCSSSCH---HHHHHHSTTT--SCCCEEEC
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHHc--CCeeEEEE
Confidence 4689999999997664 7899999887 45555443
No 106
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=96.18 E-value=0.014 Score=51.97 Aligned_cols=77 Identities=17% Similarity=0.182 Sum_probs=56.4
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChH
Q 006191 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (657)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i 267 (657)
..+||.|.|||.+.++ ++|+++|+++ |.|.++.+.+|-
T Consensus 41 ~~~~l~V~nLp~~~~~---~~l~~~F~~~--G~i~~v~i~~~~------------------------------------- 78 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDE---VQLRQLFERY--GPIESVKIVCDR------------------------------------- 78 (139)
T ss_dssp TTSEEEEESCSTTCCH---HHHHHHHHHH--SCEEEEEEEEET-------------------------------------
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEcC-------------------------------------
Confidence 4589999999997664 7899999998 667787776531
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccC
Q 006191 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (657)
Q Consensus 268 ~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 328 (657)
...+..|.|||+|++.++|..|.+.+... ....++|+.|
T Consensus 79 ----------------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 79 ----------------------ETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp ----------------------TTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred ----------------------CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 00113689999999999999999876543 2344555544
No 107
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.16 E-value=0.0061 Score=52.54 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=24.5
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcce
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYL 222 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~ 222 (657)
...+||.|.|||.+.+ .++|+++|+++ |.|.
T Consensus 6 ~~~~~lfVgnLp~~~t---e~~L~~~F~~~--G~i~ 36 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDID---EDEITASFRRF--GPLV 36 (114)
T ss_dssp SCCCCEEEECCCTTCC---HHHHHHHTTTT--CCCC
T ss_pred CCCCEEEEcCCCCCCC---HHHHHHHHHhc--CCEE
Confidence 3468999999999776 47899999987 4443
No 108
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.15 E-value=0.0068 Score=53.17 Aligned_cols=65 Identities=23% Similarity=0.261 Sum_probs=49.4
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCC--CcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccC
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHP--TTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKV 264 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p--~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kv 264 (657)
...++|.|.|||.+.+ .++|+++|+++.+ +.+.++.+++|.
T Consensus 21 ~~~~~v~V~nLp~~~t---e~dl~~~F~~~g~v~g~v~~v~i~~d~---------------------------------- 63 (123)
T 2dha_A 21 ENQVIVRMRGLPFTAT---AEEVVAFFGQHCPITGGKEGILFVTYP---------------------------------- 63 (123)
T ss_dssp CSCCEEEECSCCTTCC---HHHHHHHHHTTSCCTTGGGGEEEEECT----------------------------------
T ss_pred CCCCEEEEeCCCCCCC---HHHHHHHHHhhCCccCCcceEEEEECC----------------------------------
Confidence 3468999999999776 4889999998754 235667665531
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHh
Q 006191 265 DLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHM 314 (657)
Q Consensus 265 d~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~ 314 (657)
+.++.|.|||+|++.++|..|.+.
T Consensus 64 --------------------------~gr~~G~aFV~F~~~~~A~~Al~~ 87 (123)
T 2dha_A 64 --------------------------DGRPTGDAFVLFACEEYAQNALRK 87 (123)
T ss_dssp --------------------------TSCEEEEEEECCSSHHHHHHHHTT
T ss_pred --------------------------CCCEeeEEEEEECCHHHHHHHHHh
Confidence 112369999999999999999875
No 109
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=96.15 E-value=0.016 Score=55.83 Aligned_cols=101 Identities=13% Similarity=0.087 Sum_probs=69.1
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChH
Q 006191 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (657)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i 267 (657)
...||.|.|||.+.++ ++|+++|+++ |.|.++.+.+|..
T Consensus 14 p~~tlfVgnLp~~~te---~~L~~~F~~~--G~I~~v~i~~d~~------------------------------------ 52 (213)
T 4f02_A 14 PMASLYVGDLHPDVTE---AMLYEKFSPA--GPILSIRVCRDMI------------------------------------ 52 (213)
T ss_dssp -CCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECTT------------------------------------
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHhh--CCEEEEEEecccC------------------------------------
Confidence 4579999999998764 8899999998 6788888766410
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeccCC--------CCCCcccC
Q 006191 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAP--------EPNDVYWP 337 (657)
Q Consensus 268 ~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~AP--------~P~DIiW~ 337 (657)
..+..|.|||+|.+.++|..|.+.+.... ...+++..+. ....|.=.
T Consensus 53 -----------------------tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~l~v~ 109 (213)
T 4f02_A 53 -----------------------TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIK 109 (213)
T ss_dssp -----------------------TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHHHHCTTEEEEE
T ss_pred -----------------------CCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccccccccccccceEC
Confidence 01236899999999999999998765432 2223333332 23346777
Q ss_pred CCCCchHHHHHHHHH
Q 006191 338 FFSASFMRRWISKIV 352 (657)
Q Consensus 338 NL~~~~~~r~~R~~~ 352 (657)
||..+..+..++.++
T Consensus 110 nl~~~~t~~~l~~~F 124 (213)
T 4f02_A 110 NLDKSIDNKALYDTF 124 (213)
T ss_dssp SCCTTCCHHHHHHHH
T ss_pred CcccccHHHHHHHHH
Confidence 887776666665543
No 110
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.13 E-value=0.021 Score=48.49 Aligned_cols=80 Identities=15% Similarity=0.108 Sum_probs=54.8
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEE-cccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVI-HQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKV 264 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~-~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kv 264 (657)
+...+||.|.|||.+.+ .++|+++|+++.+ .|.++.+. .|.
T Consensus 5 s~~~~~l~V~nLp~~~t---~~~l~~~f~~~G~-~v~~v~i~~~~~---------------------------------- 46 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKK---REEILEEIAKVTE-GVLDVIVYASAA---------------------------------- 46 (109)
T ss_dssp CCCSEEEEEECCCTTSC---HHHHHHHHHHHST-TEEEEECCSSSC----------------------------------
T ss_pred ccCCCEEEEeCCCCcCC---HHHHHHHHHHhcC-CceEEEEEccCC----------------------------------
Confidence 45578999999998766 4789999998832 26565443 110
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcc--cC--CCCCceeccC
Q 006191 265 DLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQ--ST--NPTDWLLEQA 328 (657)
Q Consensus 265 d~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~--~~--~~~~~~v~~A 328 (657)
...+..|.|||+|.+.++|..|.+.++ .. ....+.|+.|
T Consensus 47 -------------------------~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a 89 (109)
T 2dis_A 47 -------------------------DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWA 89 (109)
T ss_dssp -------------------------TTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEES
T ss_pred -------------------------CCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEc
Confidence 001236899999999999999999774 22 2345666654
No 111
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.13 E-value=0.0099 Score=50.99 Aligned_cols=74 Identities=19% Similarity=0.215 Sum_probs=53.7
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCh
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~ 266 (657)
.+.+||.|.|||.+.+ .++|+++|+++ |.|.++.+..
T Consensus 8 ~~~~~l~V~nLp~~~t---e~~L~~~F~~~--G~i~~v~i~~-------------------------------------- 44 (111)
T 1whx_A 8 RSKTVILAKNLPAGTL---AAEIQETFSRF--GSLGRVLLPE-------------------------------------- 44 (111)
T ss_dssp EEEEEEEEESCCTTCC---HHHHHHHHHTT--SCEEEEECCS--------------------------------------
T ss_pred CCCCEEEEeCCCCCCC---HHHHHHHHHhc--CCEEEEEEeC--------------------------------------
Confidence 3568999999998765 47899999987 5554443310
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCC
Q 006191 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPE 330 (657)
Q Consensus 267 i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~ 330 (657)
..+.|||+|.+.++|..|.+.++.. ....+.|+.|+.
T Consensus 45 ---------------------------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 45 ---------------------------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp ---------------------------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred ---------------------------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 1368999999999999999877654 344566666653
No 112
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.11 E-value=0.031 Score=50.46 Aligned_cols=77 Identities=19% Similarity=0.125 Sum_probs=57.6
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....++|.|.|||.+.++ +.|+++|+++ |.|.++.+.+|
T Consensus 70 ~~~~~~l~V~nl~~~~t~---~~l~~~F~~~--G~i~~v~i~~~------------------------------------ 108 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNK---TELERAFGYY--GPLRSVWVARN------------------------------------ 108 (150)
T ss_dssp STTSCEEEEESCCSCCSC---HHHHHHHHHH--SCEEEEEECSS------------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhh--CCEEEEEEeeC------------------------------------
Confidence 345689999999997765 7899999988 56666655321
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEP 331 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P 331 (657)
+.|.|||+|.+.++|..|.+.++.. ....+.|+.|-++
T Consensus 109 ----------------------------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 109 ----------------------------PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp ----------------------------SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred ----------------------------CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 1489999999999999999876654 3456677766443
No 113
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.11 E-value=0.012 Score=51.27 Aligned_cols=74 Identities=11% Similarity=0.129 Sum_probs=54.4
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
.+...+|.|.|||.+.+ .++|+++|+++ |.|.++.+..+
T Consensus 28 ~~ps~~LfVgNLp~~vt---e~dL~~lF~~f--G~V~~v~i~~~------------------------------------ 66 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVT---EGEVISLGLPF--GKVTNLLMLKG------------------------------------ 66 (119)
T ss_dssp SSCCSEEEEESCCTTCC---HHHHHHHHTTT--SCCCEEEEEGG------------------------------------
T ss_pred CCCCCEEEEeCCCCCCC---HHHHHHHHHhc--CCEEEEEEeCC------------------------------------
Confidence 45578999999999766 47899999987 66766655320
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhccc----CCCCCceeccCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQS----TNPTDWLLEQAP 329 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~----~~~~~~~v~~AP 329 (657)
.|.|||+|++.++|..|.+.+.. -....+.|+.|-
T Consensus 67 -----------------------------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 67 -----------------------------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp -----------------------------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred -----------------------------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 27999999999999999886542 133456666653
No 114
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=96.08 E-value=0.019 Score=45.83 Aligned_cols=67 Identities=12% Similarity=0.185 Sum_probs=47.9
Q ss_pred ceEEEEeccCCCCCCc---hHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 189 QFTVLVRSIPVSAGST---IGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 189 ~~TVlV~~IP~~~~~~---~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
++||.|.|||.+.++. ..+.|+++|+++ |.|.++.+..+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~i~~v~i~~~------------------------------------ 42 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFYPEE------------------------------------ 42 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTT--CCEEEEECCCB------------------------------------
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhc--CCeEEEEecCC------------------------------------
Confidence 3689999999865431 357899999887 55655543210
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST 318 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~ 318 (657)
..++.|.|||+|++.++|..|.+.+...
T Consensus 43 -------------------------~g~~~g~afV~f~~~~~A~~Ai~~lng~ 70 (81)
T 2krb_A 43 -------------------------DGKTKGYIFLEYASPAHAVDAVKNADGY 70 (81)
T ss_dssp -------------------------TTBCCCEEEEEESSHHHHHHHHTTSSSC
T ss_pred -------------------------CCcEeEEEEEEECCHHHHHHHHHHhcCc
Confidence 0123689999999999999999876543
No 115
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=96.08 E-value=0.016 Score=47.98 Aligned_cols=72 Identities=11% Similarity=0.271 Sum_probs=51.7
Q ss_pred CCcceEEEEeccCC-CCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccC
Q 006191 186 QPHQFTVLVRSIPV-SAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKV 264 (657)
Q Consensus 186 ~~~~~TVlV~~IP~-~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kv 264 (657)
.+...||.|.|||. +.+ .++|+++|+++ |.|.++.+
T Consensus 7 ~~~~~~l~V~nlp~~~~t---~~~l~~~F~~~--G~v~~v~i-------------------------------------- 43 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVS---KEDLFRIFSPY--GHIMQINI-------------------------------------- 43 (96)
T ss_dssp --CCEEEEEESSTTSCCC---HHHHHHHHTTT--CCCCEEEE--------------------------------------
T ss_pred CCCCCEEEEeCCCcccCC---HHHHHHHHHhc--CCEEEEEE--------------------------------------
Confidence 45678999999997 766 47899999887 44544332
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeccCC
Q 006191 265 DLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAP 329 (657)
Q Consensus 265 d~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~AP 329 (657)
..|.|||+|++.++|..|.+.++... ...+.|+.|.
T Consensus 44 -----------------------------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 44 -----------------------------KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp -----------------------------ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred -----------------------------eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 02799999999999999998765432 3456666553
No 116
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.07 E-value=0.031 Score=46.35 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=28.8
Q ss_pred CcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCCC
Q 006191 295 LQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEP 331 (657)
Q Consensus 295 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P 331 (657)
.|.|||+|++.++|..|.+.++.. ....+.|+.|-++
T Consensus 56 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 56 RRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 589999999999999999877654 3456777766544
No 117
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=96.07 E-value=0.018 Score=48.35 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=50.9
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCh
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~ 266 (657)
...++|.|.|||.+.+ .++|+++|+++ |.|.++.+.
T Consensus 9 ~~~~~l~V~nl~~~~t---~~~l~~~F~~~--G~i~~v~~~--------------------------------------- 44 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVT---EEILEKAFSQF--GKLERVKKL--------------------------------------- 44 (103)
T ss_dssp CCCCCEEEECCCTTCC---HHHHHHHHHHH--SCEEEEEEC---------------------------------------
T ss_pred CCCCEEEEeCCCCCCC---HHHHHHHHHhc--CCEEEEEEE---------------------------------------
Confidence 4468999999999766 47899999887 455444320
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCC
Q 006191 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (657)
Q Consensus 267 i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 329 (657)
.+.|||+|++.++|..|.+.++.. +...+.|+.|-
T Consensus 45 ----------------------------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 45 ----------------------------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp ----------------------------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred ----------------------------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 148999999999999999876543 23445555553
No 118
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=96.07 E-value=0.012 Score=50.56 Aligned_cols=77 Identities=9% Similarity=0.059 Sum_probs=53.9
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
.+..++|.|.|||.+.+ .++|+++|++..+ .|..+.+..
T Consensus 25 p~~~~~l~VgnLp~~~t---e~dL~~~F~~~G~-~v~~v~i~~------------------------------------- 63 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCS---WQDLKDLARENSL-ETTFSSVNT------------------------------------- 63 (111)
T ss_dssp CCCCEEEEEECSSCCCC---HHHHHHHHHHHTC-CCSEEECSS-------------------------------------
T ss_pred CCCCCEEEEECCCCCCC---HHHHHHHHHHhCC-eeEEEEEEc-------------------------------------
Confidence 34578999999999776 4789999998831 443332200
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 329 (657)
. ++.|.|||+|++.++|..|.+.+... +...+.|+.|.
T Consensus 64 ------------------------~--~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 64 ------------------------R--DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp ------------------------C--SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred ------------------------C--CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 0 12589999999999999999876543 34456666653
No 119
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=96.07 E-value=0.0073 Score=49.27 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=29.4
Q ss_pred CcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCCC
Q 006191 295 LQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEP 331 (657)
Q Consensus 295 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P 331 (657)
.|.|||+|+++++|..|.+.++.. ....++|+.||..
T Consensus 40 ~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 40 KRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp GTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 489999999999999999976543 3456778888763
No 120
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=96.06 E-value=0.011 Score=52.63 Aligned_cols=77 Identities=14% Similarity=0.181 Sum_probs=55.1
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChH
Q 006191 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (657)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i 267 (657)
..+||.|.|||.+.+ .++|+++|+++ |.|.++.+.+|.
T Consensus 46 ~~~~l~V~nLp~~~t---e~~L~~~F~~~--G~i~~v~i~~~~------------------------------------- 83 (135)
T 2lea_A 46 GMTSLKVDNLTYRTS---PDTLRRVFEKY--GRVGDVYIPRDR------------------------------------- 83 (135)
T ss_dssp GCCCEEEECCCSSCH---HHHHHHHHGGG--SCCSEEECCCCS-------------------------------------
T ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHhc--CCEEEEEEEecC-------------------------------------
Confidence 457999999998765 47899999987 566666554321
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeccC
Q 006191 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (657)
Q Consensus 268 ~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~A 328 (657)
...+..|.|||+|.+.++|..|.+.++... ...+.|+.|
T Consensus 84 ----------------------~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 84 ----------------------YTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp ----------------------SSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred ----------------------CCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 001236899999999999999998765442 345566554
No 121
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=96.06 E-value=0.017 Score=49.23 Aligned_cols=37 Identities=22% Similarity=0.180 Sum_probs=27.3
Q ss_pred CcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCCC
Q 006191 295 LQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEP 331 (657)
Q Consensus 295 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P 331 (657)
.+.|||+|.+.++|+.|.+.++.. +...+.|+.|-+|
T Consensus 62 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 62 KGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp TTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 379999999999999999876543 3345666666433
No 122
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=96.04 E-value=0.022 Score=48.31 Aligned_cols=84 Identities=10% Similarity=-0.033 Sum_probs=60.1
Q ss_pred CcceEEEEeccCC--CCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccC
Q 006191 187 PHQFTVLVRSIPV--SAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKV 264 (657)
Q Consensus 187 ~~~~TVlV~~IP~--~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kv 264 (657)
..+++|.+.|+.. +.++++.+.|++.|+++ |.|.++.+.+|..
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~--G~V~~v~i~~~~~--------------------------------- 50 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKY--GKVGKCVIFEIPG--------------------------------- 50 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGG--SCEEEEEEEECSS---------------------------------
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhc--CCEEEEEEecCCC---------------------------------
Confidence 3467999999973 33345678999999988 7788888866410
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCC
Q 006191 265 DLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPE 330 (657)
Q Consensus 265 d~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~ 330 (657)
...++.|.|||+|++.++|..|.+.++.. ....+.++.|++
T Consensus 51 -------------------------~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 51 -------------------------APDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp -------------------------CCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred -------------------------CCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 00123689999999999999999987655 345667777764
No 123
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=96.04 E-value=0.028 Score=53.71 Aligned_cols=100 Identities=19% Similarity=0.172 Sum_probs=67.3
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChH
Q 006191 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (657)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i 267 (657)
..+||.|.|||.+.+ .++|+++|+++ |.|.++.+.+|..
T Consensus 27 ~~~~l~V~nLp~~~t---~~~l~~~f~~~--G~i~~v~i~~~~~------------------------------------ 65 (216)
T 2qfj_A 27 IMSRVYVGSIYYELG---EDTIRQAFAPF--GPIKSIDMSWDSV------------------------------------ 65 (216)
T ss_dssp HHTEEEEECCCTTCC---HHHHHHHHGGG--SCEEEEEECCC-C------------------------------------
T ss_pred cCCEEEEECCCCCCC---HHHHHHHHHhC--CCEEEEEEeecCC------------------------------------
Confidence 357999999999776 47899999988 6677777654310
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeccCC----------------
Q 006191 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAP---------------- 329 (657)
Q Consensus 268 ~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~AP---------------- 329 (657)
..+..|.|||+|.+.++|..|.+.++... ...+.+..+.
T Consensus 66 -----------------------~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~ 122 (216)
T 2qfj_A 66 -----------------------TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEA 122 (216)
T ss_dssp -----------------------C-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHH
T ss_pred -----------------------CCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhccc
Confidence 01236899999999999999998765432 2344444332
Q ss_pred -CCCCcccCCCCCchHHHHHHHH
Q 006191 330 -EPNDVYWPFFSASFMRRWISKI 351 (657)
Q Consensus 330 -~P~DIiW~NL~~~~~~r~~R~~ 351 (657)
+..-|.-.||.....+.-++.+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~ 145 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSV 145 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHH
T ss_pred CCCcEEEEeCCCCcCCHHHHHHH
Confidence 2245666777666555555543
No 124
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=96.02 E-value=0.0091 Score=49.51 Aligned_cols=40 Identities=25% Similarity=0.208 Sum_probs=30.7
Q ss_pred CcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCCCCCc
Q 006191 295 LQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEPNDV 334 (657)
Q Consensus 295 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P~DI 334 (657)
.|.|||+|++.++|..|.+.++.. ....+.|+.|-++.+.
T Consensus 51 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 92 (97)
T 1nu4_A 51 RGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDI 92 (97)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCTH
T ss_pred CcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCCcc
Confidence 489999999999999999876654 3455777777666554
No 125
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=96.02 E-value=0.015 Score=50.71 Aligned_cols=76 Identities=14% Similarity=0.187 Sum_probs=55.0
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChHH
Q 006191 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVD 268 (657)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i~ 268 (657)
.+||.|.|||.+.+ .++|+++|+++ |.|.++.+.+|-
T Consensus 36 ~~~l~V~nlp~~~t---~~~l~~~F~~~--G~i~~v~i~~~~-------------------------------------- 72 (124)
T 2jwn_A 36 KRSVYVGNVDYGST---AQDLEAHFSSC--GSINRITILCDK-------------------------------------- 72 (124)
T ss_dssp HTEEEEEEECTTCC---HHHHHHHHHTT--SCEEEEEEEEEC--------------------------------------
T ss_pred CCEEEEeCCCCCCC---HHHHHHHHHhc--CCEEEEEEEecC--------------------------------------
Confidence 57999999998766 47899999987 677777776531
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCC
Q 006191 269 HYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (657)
Q Consensus 269 ~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 329 (657)
...+..|.|||+|++.++|..|. .+... +...+.|+.|-
T Consensus 73 ---------------------~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 73 ---------------------FSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp ---------------------TTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred ---------------------CCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 00123689999999999999999 44433 23456666553
No 126
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=96.01 E-value=0.022 Score=49.05 Aligned_cols=61 Identities=18% Similarity=0.222 Sum_probs=45.9
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCh
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~ 266 (657)
...++|.|.|||.+.++ ++|+++|+++ |.|.++.+.. |
T Consensus 14 r~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~v~~~~i~~------------------------------------~- 51 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSW---QDLKDHMREA--GDVCYADVYR------------------------------------D- 51 (115)
T ss_dssp ---CCEEEEECCSSCCT---THHHHHHGGG--SCEEEEEECT------------------------------------T-
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEec------------------------------------C-
Confidence 34689999999987765 6799999987 5565554411 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC
Q 006191 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST 318 (657)
Q Consensus 267 i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~ 318 (657)
+.|||+|++.++|+.|.+.++..
T Consensus 52 -----------------------------g~afV~f~~~~~a~~Ai~~l~g~ 74 (115)
T 3beg_B 52 -----------------------------GTGVVEFVRKEDMTYAVRKLDNT 74 (115)
T ss_dssp -----------------------------SEEEEEESSHHHHHHHHHHHTTC
T ss_pred -----------------------------CEEEEEECCHHHHHHHHHHhCCC
Confidence 79999999999999999976543
No 127
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.00 E-value=0.012 Score=50.62 Aligned_cols=64 Identities=19% Similarity=0.214 Sum_probs=48.5
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcc-eeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTY-LSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKV 264 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v-~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kv 264 (657)
....+||.|.|||.+.+ .++|+++|+++ +.+ .++.+.+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t---~~~l~~~F~~~--g~v~~~v~i~~d~---------------------------------- 52 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSIT---KMDVLQFLEGI--PVDENAVHVLVDN---------------------------------- 52 (114)
T ss_dssp CSCCCEEEEESCCTTSC---HHHHHHHTTTS--CCCSTTEEECCCT----------------------------------
T ss_pred CCCccEEEEeCcCCcCC---HHHHHHHHHhC--CCcCCeEEEEECC----------------------------------
Confidence 34578999999999766 47899999987 555 556554431
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHh
Q 006191 265 DLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHM 314 (657)
Q Consensus 265 d~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~ 314 (657)
..+..|.|||+|++.++|..|.+.
T Consensus 53 --------------------------~g~~~G~afV~F~~~~~a~~Al~~ 76 (114)
T 2cpy_A 53 --------------------------NGQGLGQALVQFKNEDDARKSERL 76 (114)
T ss_dssp --------------------------TSSCSSCEEEECSSHHHHHHHGGG
T ss_pred --------------------------CCCcceEEEEEECCHHHHHHHHHh
Confidence 012368999999999999999876
No 128
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.97 E-value=0.013 Score=50.26 Aligned_cols=36 Identities=22% Similarity=0.392 Sum_probs=27.9
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcc
Q 006191 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQ 229 (657)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~ 229 (657)
..++|.|.|||.+.++ ++|+++|+++ .|.++.+++|
T Consensus 15 ~~~~v~V~nLp~~~te---~dl~~~F~~~---~v~~v~i~~d 50 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAME---NDVRDFFHGL---RVDAVHLLKD 50 (109)
T ss_dssp HHHEEEEECCCSSCCH---HHHHHHTTTS---CCCEEEECCC
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHhccC---CeeEEEEEEC
Confidence 4589999999997764 8899999886 3566766553
No 129
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.97 E-value=0.018 Score=49.55 Aligned_cols=76 Identities=11% Similarity=0.202 Sum_probs=54.3
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChHH
Q 006191 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVD 268 (657)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i~ 268 (657)
.++|.|.|||.+.+ .+.|+++|+++ |.|.++.+.+|.
T Consensus 27 ~~~l~V~nLp~~~t---e~~l~~~F~~~--G~i~~v~i~~~~-------------------------------------- 63 (116)
T 1x4b_A 27 FRKLFIGGLSFETT---EESLRNYYEQW--GKLTDCVVMRDP-------------------------------------- 63 (116)
T ss_dssp HTEEEEECCTTCCC---HHHHHHHHTSS--CCCSEEEEECCT--------------------------------------
T ss_pred CCEEEEeCCCCCCC---HHHHHHHHHhc--CCEEEEEEEECC--------------------------------------
Confidence 47999999999766 47899999887 567777775531
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCC
Q 006191 269 HYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (657)
Q Consensus 269 ~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 329 (657)
...+..|.|||+|.+.++|..|.+. ... +...+.|+.|-
T Consensus 64 ---------------------~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 64 ---------------------ASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp ---------------------TTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred ---------------------CCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 0012368999999999999999886 221 23445565553
No 130
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.95 E-value=0.02 Score=52.26 Aligned_cols=78 Identities=14% Similarity=0.195 Sum_probs=56.0
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCh
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~ 266 (657)
...++|.|.|||.+.+ .++|+++|+++ |.|.++.+.+|.
T Consensus 68 ~~~~~l~v~nl~~~~~---~~~l~~~F~~~--G~v~~~~i~~~~------------------------------------ 106 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTS---PDTLRRVFEKY--GRVGDVYIPRDR------------------------------------ 106 (158)
T ss_dssp CBCCEEEEESCCTTCC---HHHHHHHHHHH--SCEEEEECCCCS------------------------------------
T ss_pred CCCCEEEEeCCCCCCC---HHHHHHHHHhc--CCeEEEEEeecC------------------------------------
Confidence 4568999999999766 47899999988 567676664431
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccC
Q 006191 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (657)
Q Consensus 267 i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 328 (657)
...+..|.|||+|.+.++|..|.+.++.. ....+.|+.|
T Consensus 107 -----------------------~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 107 -----------------------YTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp -----------------------SCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred -----------------------CCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 00123689999999999999999876543 2344555544
No 131
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.94 E-value=0.015 Score=49.21 Aligned_cols=74 Identities=11% Similarity=0.120 Sum_probs=55.0
Q ss_pred CcceEEEEeccCC-CCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 187 PHQFTVLVRSIPV-SAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 187 ~~~~TVlV~~IP~-~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
...++|.|.|||. +.+ .++|+++|+++ |.|.++.+.++
T Consensus 13 ~p~~~l~V~nLp~~~~t---e~dL~~lF~~f--G~V~~v~i~~~------------------------------------ 51 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNL---RYQLLQLVEPF--GVISNHLILNK------------------------------------ 51 (102)
T ss_dssp CCCCEEEEESCCCSSSH---HHHHHTTTGGG--SCEEEEEECSS------------------------------------
T ss_pred CCCCEEEEeCCCCCcCC---HHHHHHHHHhc--CCEEEEEEEcC------------------------------------
Confidence 4568999999998 765 47899999988 67777766321
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC----CCCCceeccCCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST----NPTDWLLEQAPE 330 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~----~~~~~~v~~AP~ 330 (657)
.+.|||+|++.++|..|.+.++.. ....+.|+.|-.
T Consensus 52 -----------------------------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 52 -----------------------------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp -----------------------------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred -----------------------------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 157999999999999999876532 334566666653
No 132
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=95.91 E-value=0.024 Score=53.28 Aligned_cols=103 Identities=7% Similarity=0.136 Sum_probs=67.9
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....+||.|.|||.+.+ .++|+++|+++ |.|.++.+.+|..
T Consensus 10 ~~~~~~l~V~nLp~~~t---e~~l~~~F~~~--G~i~~v~i~~~~~---------------------------------- 50 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETT---DESLRSHFEQW--GTLTDCVVMRDPN---------------------------------- 50 (196)
T ss_dssp CGGGGEEEEESCCTTCC---HHHHHHHHGGG--SCEEEEEEEECTT----------------------------------
T ss_pred CCCCCEEEEeCCCCCCC---HHHHHHHHHhC--CCEEEEEEEEcCC----------------------------------
Confidence 45678999999999776 47899999988 6677777765410
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC-CCCCceeccCC------------CCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST-NPTDWLLEQAP------------EPN 332 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~-~~~~~~v~~AP------------~P~ 332 (657)
..++.|.|||+|.+.++|..|.+..... ....+.+..|. .+.
T Consensus 51 -------------------------~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~ 105 (196)
T 1l3k_A 51 -------------------------TKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVK 105 (196)
T ss_dssp -------------------------TCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC-----------CCS
T ss_pred -------------------------CCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCcccccccccCCCcc
Confidence 0123689999999999999999762110 11223333221 224
Q ss_pred CcccCCCCCchHHHHHHHHH
Q 006191 333 DVYWPFFSASFMRRWISKIV 352 (657)
Q Consensus 333 DIiW~NL~~~~~~r~~R~~~ 352 (657)
.|.=.||.....+..++.++
T Consensus 106 ~l~V~nLp~~~t~~~l~~~F 125 (196)
T 1l3k_A 106 KIFVGGIKEDTEEHHLRDYF 125 (196)
T ss_dssp EEEEECCTTTCCHHHHHHHH
T ss_pred eEEEeCCCCCCCHHHHHHHH
Confidence 56777887766665555533
No 133
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=95.91 E-value=0.019 Score=52.50 Aligned_cols=79 Identities=10% Similarity=0.012 Sum_probs=57.6
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChH
Q 006191 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (657)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i 267 (657)
..++|.|.|||.+.++ ++|+++|+++.+..|.++.+++|-.
T Consensus 54 ~~~~lfVgnLp~~~te---~~L~~~F~~~G~i~v~~v~i~~d~~------------------------------------ 94 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTD---QQLIQVIRSIGVYDVVELKFAENRA------------------------------------ 94 (156)
T ss_dssp --CEEEEECCCTTCCH---HHHHHHHHHTTCCCEEEEEEEECTT------------------------------------
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHHHCCccEEEEEEEecCC------------------------------------
Confidence 4589999999997764 7899999988432788887766410
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccC
Q 006191 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (657)
Q Consensus 268 ~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 328 (657)
..+..|.|||+|.+.++|..|.+.+... +...+.|+.|
T Consensus 95 -----------------------tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 95 -----------------------NGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp -----------------------TCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred -----------------------CCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 0123689999999999999999987654 2345666665
No 134
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=95.88 E-value=0.016 Score=49.47 Aligned_cols=78 Identities=10% Similarity=0.219 Sum_probs=53.9
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCh
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~ 266 (657)
...+||.|.|||.+.+ .+.|+++|+++ |.|.++.+.+|.
T Consensus 23 ~~~~~lfV~nLp~~~t---e~~L~~~F~~~--G~i~~v~i~~~~------------------------------------ 61 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTT---QEGLREYFGQF--GEVKECLVMRDP------------------------------------ 61 (109)
T ss_dssp ---CCEEEESCCTTCC---HHHHHHHHTTT--SCEEEEEECCCT------------------------------------
T ss_pred CCCCEEEEeCCCCCCC---HHHHHHHHHcc--CCeEEEEEEECC------------------------------------
Confidence 4568999999998766 47899999987 667777765531
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC-CCCCceeccC
Q 006191 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST-NPTDWLLEQA 328 (657)
Q Consensus 267 i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~-~~~~~~v~~A 328 (657)
...+..|.|||+|.+.++|..|.+..... +...+.|+.|
T Consensus 62 -----------------------~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 62 -----------------------LTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp -----------------------TTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred -----------------------CCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 00123689999999999999999864311 2344555554
No 135
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.87 E-value=0.021 Score=47.80 Aligned_cols=37 Identities=22% Similarity=0.149 Sum_probs=27.7
Q ss_pred CcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCCC
Q 006191 295 LQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEP 331 (657)
Q Consensus 295 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P 331 (657)
.+.|||+|++.++|..|.+.++.. ....+.|+.|-.+
T Consensus 54 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 54 KGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp EEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 589999999999999999876554 2345666666433
No 136
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=95.86 E-value=0.028 Score=46.91 Aligned_cols=73 Identities=16% Similarity=0.193 Sum_probs=51.8
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
.+..+||.|.|||.+.+ .++|+++|+++ |.|.++.+.
T Consensus 24 ~~~~~~l~V~nlp~~~~---~~~l~~~f~~~--G~i~~~~~~-------------------------------------- 60 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFAT---EADLIPLFQNF--GFILDFKHY-------------------------------------- 60 (101)
T ss_dssp CSSCCEEEEESCCTTCC---HHHHHHHHHTT--SCCSEEEEE--------------------------------------
T ss_pred CCCCCEEEEcCCCcccC---HHHHHHHHHhC--CCEEEEEEe--------------------------------------
Confidence 34568999999999766 47899999887 555444331
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeccC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~A 328 (657)
+..|.|||+|++.++|..|.+.++... ...++|+.|
T Consensus 61 ---------------------------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 61 ---------------------------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp ---------------------------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred ---------------------------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 024899999999999999998765432 233444444
No 137
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=95.86 E-value=0.033 Score=55.42 Aligned_cols=96 Identities=13% Similarity=0.149 Sum_probs=72.7
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCh
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~ 266 (657)
...+||.|.|||.+.+ .+.|+++|+++ |.|.++.+.+
T Consensus 20 ~~~~~l~V~nLp~~~t---e~~l~~~F~~~--G~i~~v~i~~-------------------------------------- 56 (261)
T 3sde_A 20 TQRCRLFVGNLPTDIT---EEDFKRLFERY--GEPSEVFINR-------------------------------------- 56 (261)
T ss_dssp CGGGEEEEESCCTTCC---HHHHHHHTGGG--CCCSEEEEET--------------------------------------
T ss_pred CCCCEEEEECCCCCCC---HHHHHHHHHhc--CCEEEEEEeC--------------------------------------
Confidence 4568999999999776 47899999987 5565554411
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCCCCCcccCCCCCchH
Q 006191 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEPNDVYWPFFSASFM 344 (657)
Q Consensus 267 i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P~DIiW~NL~~~~~ 344 (657)
..|.|||+|.+.++|..|.+.+... ....+.++.|.+..-|.=.||..+..
T Consensus 57 ---------------------------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~l~v~nl~~~~t 109 (261)
T 3sde_A 57 ---------------------------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVS 109 (261)
T ss_dssp ---------------------------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSSEEEEESCCTTCC
T ss_pred ---------------------------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCCcccccCCCCCCC
Confidence 1379999999999999999876544 34567788888888888899987766
Q ss_pred HHHHHHHH
Q 006191 345 RRWISKIV 352 (657)
Q Consensus 345 ~r~~R~~~ 352 (657)
+..++.++
T Consensus 110 ~~~l~~~F 117 (261)
T 3sde_A 110 NELLEQAF 117 (261)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666543
No 138
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=95.85 E-value=0.032 Score=46.53 Aligned_cols=69 Identities=19% Similarity=0.169 Sum_probs=49.9
Q ss_pred EEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChHHHH
Q 006191 191 TVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVDHY 270 (657)
Q Consensus 191 TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i~~~ 270 (657)
||.|.|||.+.+ .++|+++|+++ |.|.++.+..|
T Consensus 2 ~l~V~nLp~~~t---~~~l~~~F~~~--G~i~~v~i~~~----------------------------------------- 35 (101)
T 2hvz_A 2 KVYVGNLGTGAG---KGELERAFSYY--GPLRTVWIARN----------------------------------------- 35 (101)
T ss_dssp EEEEECCCSSCS---HHHHHHHHHHH--CCCSEEEEESS-----------------------------------------
T ss_pred EEEEeCCCCCCC---HHHHHHHHHhc--CCeEEEEEeeC-----------------------------------------
Confidence 799999999766 47899999988 55666655331
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccC
Q 006191 271 GKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (657)
Q Consensus 271 ~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 328 (657)
..|.|||+|++.++|..|.+.++.. +...+.|+.|
T Consensus 36 -----------------------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 72 (101)
T 2hvz_A 36 -----------------------PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 72 (101)
T ss_dssp -----------------------SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEES
T ss_pred -----------------------CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEc
Confidence 1479999999999999999865433 2233444443
No 139
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.83 E-value=0.018 Score=49.33 Aligned_cols=36 Identities=19% Similarity=0.162 Sum_probs=27.2
Q ss_pred CCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCC
Q 006191 294 ELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (657)
Q Consensus 294 ~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 329 (657)
..|.|||+|++.++|..|.+.++.. ....+.|+.|-
T Consensus 66 ~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 103 (115)
T 2cpx_A 66 MRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 103 (115)
T ss_dssp SCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEcc
Confidence 3689999999999999999876654 23456666553
No 140
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=95.82 E-value=0.013 Score=50.78 Aligned_cols=64 Identities=20% Similarity=0.304 Sum_probs=48.4
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCC-CcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHP-TTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p-~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
...+||.|.|||.+.++ ++|+++|+++.+ +.|.++.+++|.
T Consensus 15 ~~~~~l~V~nLp~~~te---~~l~~~F~~~G~~~~v~~v~i~~~~----------------------------------- 56 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSI---EDVQNFLSDCTIHDGVAGVHFIYTR----------------------------------- 56 (118)
T ss_dssp CCCCEEEEESCCTTCCH---HHHHHHTTTSCBTTGGGGEEEEECS-----------------------------------
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHHcCCccCceeEEEEECC-----------------------------------
Confidence 45689999999997764 789999998732 126677665541
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHH
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFH 313 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q 313 (657)
+.++.|.|||+|+++++|..|.+
T Consensus 57 -------------------------~g~~~G~afV~F~~~~~a~~Al~ 79 (118)
T 2db1_A 57 -------------------------EGRQSGEAFVELESEDDVKLALK 79 (118)
T ss_dssp -------------------------SSCEEEEEEEEBSSHHHHHHHGG
T ss_pred -------------------------CCCCCeEEEEEECCHHHHHHHHh
Confidence 01236899999999999999998
No 141
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=95.81 E-value=0.04 Score=45.78 Aligned_cols=72 Identities=10% Similarity=0.229 Sum_probs=53.1
Q ss_pred CCcceEEEEeccCC-CCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccC
Q 006191 186 QPHQFTVLVRSIPV-SAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKV 264 (657)
Q Consensus 186 ~~~~~TVlV~~IP~-~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kv 264 (657)
.+..+||.|.|||. +.+ .+.|+++|+++ |.|.++.+
T Consensus 19 ~~~~~~l~V~nLp~~~~t---~~~L~~~F~~~--G~v~~v~i-------------------------------------- 55 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVS---KEDLFRIFSPY--GHIMQINI-------------------------------------- 55 (97)
T ss_dssp CCTTCEEEEESCCSSCCC---HHHHHHHHGGG--SCEEEEEE--------------------------------------
T ss_pred CCCCCEEEEeCCCcccCC---HHHHHHHHHhc--CCEEEEEE--------------------------------------
Confidence 45678999999996 766 47899999987 55544432
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCC
Q 006191 265 DLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (657)
Q Consensus 265 d~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 329 (657)
..|.|||+|++.++|..|.+.+... ....+.|+.|-
T Consensus 56 -----------------------------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 56 -----------------------------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp -----------------------------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred -----------------------------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 0379999999999999999976544 23455666553
No 142
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=95.78 E-value=0.028 Score=51.75 Aligned_cols=79 Identities=13% Similarity=0.101 Sum_probs=56.5
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....+||.|.|||.+.+ .+.|+++|+++ |.|.++.+..+.
T Consensus 69 ~~~~~~l~V~nLp~~~t---~~~L~~~F~~~--G~i~~v~i~~~~----------------------------------- 108 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQ---EDEIQEKFCDY--GEIKNIHLNLDR----------------------------------- 108 (165)
T ss_dssp CC-CEEEEEESCCTTCC---HHHHHHHHGGG--SCEEEEEEEECT-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCC---HHHHHHHhhcC--CCEEEEEEEecC-----------------------------------
Confidence 44568999999999765 47899999998 677777775531
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 328 (657)
...+..|.|||+|.+..+|..|.+.++.. ....+.|..|
T Consensus 109 ------------------------~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 109 ------------------------RTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp ------------------------TTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred ------------------------CCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 00123689999999999999999876543 2334455444
No 143
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=95.75 E-value=0.027 Score=49.76 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=54.0
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCccee--eEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccC
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLS--HTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKV 264 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~--v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kv 264 (657)
....||.|.|||.+.++ +.|+++|+++ |.|.. +.+++|-
T Consensus 21 ~~~~~lfV~nL~~~~te---~~L~~~F~~~--G~v~~~~v~i~~d~---------------------------------- 61 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTM---DSILGALAPY--AVLSSSNVRVIKDK---------------------------------- 61 (131)
T ss_dssp CCCCEEEECSCCTTCCS---HHHHHHHGGG--CCCCTTTEECCBCS----------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHh--CCcceeeEEEEEcC----------------------------------
Confidence 34679999999998765 7899999988 45533 5554431
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC----C--CCCceeccC
Q 006191 265 DLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST----N--PTDWLLEQA 328 (657)
Q Consensus 265 d~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~----~--~~~~~v~~A 328 (657)
...+..|.|||+|++. +|..|.+.++.. . ...+.|+.|
T Consensus 62 -------------------------~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a 105 (131)
T 2m2b_A 62 -------------------------QTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFA 105 (131)
T ss_dssp -------------------------SSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEEC
T ss_pred -------------------------CCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEEC
Confidence 0112369999999999 999999887665 1 234555554
No 144
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.69 E-value=0.011 Score=50.68 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=28.2
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEc
Q 006191 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIH 228 (657)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 228 (657)
.+||.|.|||.+.+ .++|+++|+++ |.|.++.+.+
T Consensus 25 ~~~l~V~nlp~~~t---~~~l~~~F~~~--G~i~~v~i~~ 59 (114)
T 2cq4_A 25 ARTVFCMQLAARIR---PRDLEDFFSAV--GKVRDVRIIS 59 (114)
T ss_dssp HTEEEEESCCTTCC---HHHHHHHHTTT--SCEEEEEECC
T ss_pred CCEEEEeCCCCCCC---HHHHHHHHHhC--CCEeEEEEEe
Confidence 47999999999766 47899999987 6777777654
No 145
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=95.65 E-value=0.01 Score=53.22 Aligned_cols=78 Identities=17% Similarity=0.132 Sum_probs=53.1
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCh
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~ 266 (657)
...++|.|.|||.+.+ .++|+++|+++ + ++++.+++|-
T Consensus 44 ~~~~~lfV~nLp~~~t---e~dL~~~F~~~--G-i~~v~i~~d~------------------------------------ 81 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKAT---ENDIYNFFSPL--N-PVRVHIEIGP------------------------------------ 81 (139)
T ss_dssp -CCCCEECCSCCTTCC---HHHHHHHHCSC--C-CSEEECCCSS------------------------------------
T ss_pred CCCCEEEEeCCCCCCC---HHHHHHHHHhc--C-CeEEEEEECC------------------------------------
Confidence 3568999999999776 48899999987 3 4466554431
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCCC
Q 006191 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEP 331 (657)
Q Consensus 267 i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P 331 (657)
. .++.|.|||+|+++++|..|.+ .... ....+.|..|..+
T Consensus 82 -----------------------~-g~srGfaFV~F~~~e~A~~Al~-~~g~~l~gR~i~V~~a~~~ 123 (139)
T 2hgn_A 82 -----------------------D-GRVTGEADVEFATHEEAVAAMS-KDRANMQHRYIELFLNSTT 123 (139)
T ss_dssp -----------------------S-SCSSCCCEEECSHHHHHHHHTT-CCSCSSSSCCCCCEECCCS
T ss_pred -----------------------C-CCCceEEEEEeCCHHHHHHHHh-hCCCEECCEEEEEEECCCC
Confidence 0 1247999999999999999984 3322 2234556555443
No 146
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=95.59 E-value=0.042 Score=46.75 Aligned_cols=71 Identities=17% Similarity=0.228 Sum_probs=52.4
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....++|.|.|||.+.+ .++|+++|+++ |.|.++.+.
T Consensus 28 ~~~~~~l~V~nLp~~~t---~~~L~~~F~~~--G~i~~v~i~-------------------------------------- 64 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQ---ESELNEIFGPF--GPMKEVKIL-------------------------------------- 64 (108)
T ss_dssp CCSCSEEEECSSCTTCC---HHHHHHHHTTT--SCCCEEEEE--------------------------------------
T ss_pred CCCCCEEEEECCCCCCC---HHHHHHHHHhc--CCEEEEEEE--------------------------------------
Confidence 34568999999999766 47899999887 455444331
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 328 (657)
.|.|||+|++.++|..|.+.+... +...+.|+.|
T Consensus 65 -----------------------------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 65 -----------------------------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp -----------------------------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred -----------------------------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 279999999999999999876544 3344566655
No 147
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=95.58 E-value=0.011 Score=54.25 Aligned_cols=99 Identities=8% Similarity=0.133 Sum_probs=64.5
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChHH
Q 006191 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVD 268 (657)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i~ 268 (657)
++||.|.|||.+.+ .++|+++|+++ |.+.++.+.+|.
T Consensus 3 ~~~l~v~nLp~~~t---~~~l~~~F~~~--G~i~~v~i~~~~-------------------------------------- 39 (167)
T 2cjk_A 3 SCKMFIGGLNWDTT---EDNLREYFGKY--GTVTDLKIMKDP-------------------------------------- 39 (167)
T ss_dssp GGEEEECSCCTTCC---HHHHHHHHTTT--CCEEEEECCCCT--------------------------------------
T ss_pred CcEEEEeCCCCCCC---HHHHHHHHHhC--CCEEEEEEEECC--------------------------------------
Confidence 57999999999776 47899999987 567676654321
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCCCCCceeccCC------CCCCcccCCCCCc
Q 006191 269 HYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTNPTDWLLEQAP------EPNDVYWPFFSAS 342 (657)
Q Consensus 269 ~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~~~~~~v~~AP------~P~DIiW~NL~~~ 342 (657)
...++.|.|||+|.+.++|..|.+..+.-+...+.+..|. .+..|.=.||..+
T Consensus 40 ---------------------~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~V~nlp~~ 98 (167)
T 2cjk_A 40 ---------------------ATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRDEQDKTGKIFVGGIGPD 98 (167)
T ss_dssp ---------------------TTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCHHHHHHCEEEEEEEECTT
T ss_pred ---------------------CCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccchhhccCCCeEEECCCCCC
Confidence 0112468999999999999999885322222233333332 2234666677666
Q ss_pred hHHHHHHHH
Q 006191 343 FMRRWISKI 351 (657)
Q Consensus 343 ~~~r~~R~~ 351 (657)
..+..++.+
T Consensus 99 ~t~~~l~~~ 107 (167)
T 2cjk_A 99 VRPKEFEEF 107 (167)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 555555554
No 148
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=95.52 E-value=0.061 Score=43.86 Aligned_cols=73 Identities=12% Similarity=0.080 Sum_probs=56.2
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
...+..+.|.||+.+.++ +.|++.|+++ |.|.++++..
T Consensus 4 ~~~~~wL~VgNL~~~~te---~~L~~lF~q~--G~V~~~~l~~------------------------------------- 41 (89)
T 2wbr_A 4 AWGSSWLLLKNLTAQIDG---PTLRTLCMQH--GPLVSFHPYL------------------------------------- 41 (89)
T ss_dssp CCCCCEEEEECCCTTCCC---HHHHHHHHHH--SCEEEEEEET-------------------------------------
T ss_pred CCccceEEEeCCCccCCH---HHHHHHHHhh--CCEEEEEEcC-------------------------------------
Confidence 356789999999998776 7899999998 5566655411
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 328 (657)
+.|.|||+|.++++|..|.+.+... ..+.++|+.|
T Consensus 42 ----------------------------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 42 ----------------------------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp ----------------------------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ----------------------------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 1489999999999999999987654 3455677777
No 149
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.49 E-value=0.014 Score=51.05 Aligned_cols=77 Identities=17% Similarity=0.233 Sum_probs=51.9
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCh
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~ 266 (657)
...++|.|.|||.+.++ ++|+++|+++ |.|.++.++.+.
T Consensus 23 ~~~~~l~V~nLp~~~te---~~l~~~F~~~--G~v~~~~~~~~~------------------------------------ 61 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAEN---KHVIDFFKKL--DIVEDSIYIAYG------------------------------------ 61 (124)
T ss_dssp CCCCEEEEECCCTTCCH---HHHHHHSCSS--CBCTTTCEEEEC------------------------------------
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCccceEEEEEC------------------------------------
Confidence 34589999999997764 7899999876 444332222110
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccC
Q 006191 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (657)
Q Consensus 267 i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 328 (657)
...+..|.|||+|.+.++|..|.+ +... ....+.|..|
T Consensus 62 -----------------------~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 62 -----------------------PNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp -----------------------TTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred -----------------------CCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 011236899999999999999998 5433 2345566655
No 150
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.47 E-value=0.031 Score=46.61 Aligned_cols=35 Identities=23% Similarity=0.125 Sum_probs=26.1
Q ss_pred CCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccC
Q 006191 294 ELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (657)
Q Consensus 294 ~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 328 (657)
..+.|||+|++.++|+.|.+.++.. +...+.|+.|
T Consensus 52 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 52 SKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp BCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred EeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 3689999999999999999876543 2344556555
No 151
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.47 E-value=0.061 Score=44.18 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=25.5
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceee
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSH 224 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v 224 (657)
...++|.|.|||.+.+ .++|+++|+++ |.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t---~~~l~~~F~~~--G~v~~v 38 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVD---SAQLSEYFLAF--GPVASV 38 (94)
T ss_dssp TTCCEEEEECCCTTCC---HHHHHHHGGGT--SCEEEE
T ss_pred CCCCEEEEECCCCCCC---HHHHHHHHHhc--CCeEEE
Confidence 3467999999999776 47899999987 555543
No 152
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=95.47 E-value=0.019 Score=47.99 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=26.7
Q ss_pred CCcEEEEEecCHHHHHHHHHhcccCC--CCCceeccCC
Q 006191 294 ELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAP 329 (657)
Q Consensus 294 ~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~AP 329 (657)
+.|.|||+|++.++|..|.+ +.... ...+.|+.|-
T Consensus 57 ~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 57 NRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp TTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred cCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 46899999999999999998 65442 3556666653
No 153
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.044 Score=49.71 Aligned_cols=79 Identities=27% Similarity=0.372 Sum_probs=56.4
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....++|.|+|+|.+.+ .++|+++|+++ |.+.++.+.+|.
T Consensus 84 ~~~~~~l~v~nl~~~~t---~~~l~~~f~~~--G~i~~~~i~~~~----------------------------------- 123 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVD---DETLRNAFKDF--PSYLSGHVMWDM----------------------------------- 123 (166)
T ss_dssp CTTCEEEEEESCCTTCC---HHHHHHHHTTS--TTEEEEEEEECT-----------------------------------
T ss_pred CCCCceEEECCCCCCCC---HHHHHHHHhcc--CCeeEEEEEecC-----------------------------------
Confidence 34578999999999765 47899999887 667777775531
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeccC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~A 328 (657)
...++.|.|||+|++.++|..|.+.++... ...+.|+.|
T Consensus 124 ------------------------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 124 ------------------------QTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp ------------------------TTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred ------------------------CCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 011236899999999999999998775442 233444443
No 154
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=95.43 E-value=0.025 Score=49.78 Aligned_cols=62 Identities=21% Similarity=0.238 Sum_probs=47.0
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcce--eeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccC
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYL--SHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKV 264 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~--~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kv 264 (657)
...++|.|.|||.+.++ ++|+++|+++ + +. ++.+.+|-
T Consensus 40 ~~~~~lfVgnLp~~~te---~dL~~~F~~~--~-i~~~~v~i~~d~---------------------------------- 79 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTK---EEIVQFFSGL--E-IVPNGITLPVDP---------------------------------- 79 (126)
T ss_dssp SSCCEEEEECCCTTCCH---HHHHHHTTTS--C-EEEEEEECCCCS----------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHhcC--C-ceeeEEEEEECC----------------------------------
Confidence 45689999999998764 8899999986 3 44 55554421
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHh
Q 006191 265 DLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHM 314 (657)
Q Consensus 265 d~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~ 314 (657)
. .++.|.|||+|+++++|..|.+.
T Consensus 80 -------------------------~-GrsrGfaFV~F~~~e~A~~Al~~ 103 (126)
T 2hgm_A 80 -------------------------E-GKITGEAFVQFASQELAEKALGK 103 (126)
T ss_dssp -------------------------S-SSSCSEEEEEESSTTHHHHHHTT
T ss_pred -------------------------C-CCCceEEEEEECCHHHHHHHHHH
Confidence 0 12479999999999999999985
No 155
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=95.40 E-value=0.042 Score=55.20 Aligned_cols=94 Identities=14% Similarity=0.225 Sum_probs=71.0
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChH
Q 006191 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (657)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i 267 (657)
+.+||.|.|||.+.++ ++|+++|+++ | +.++.+
T Consensus 21 ~~~~l~V~nLp~~~te---~~l~~~F~~~--G-i~~~~~----------------------------------------- 53 (284)
T 3smz_A 21 NRRKILIRGLPGDVTN---QEVHDLLSDY--E-LKYCFV----------------------------------------- 53 (284)
T ss_dssp CCCEEEEECCCTTCCH---HHHHHHTTTS--C-EEEEEE-----------------------------------------
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHHc--C-CEEEEE-----------------------------------------
Confidence 4579999999997764 7899999887 4 544332
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCCCCCcccCCCCCchHH
Q 006191 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEPNDVYWPFFSASFMR 345 (657)
Q Consensus 268 ~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P~DIiW~NL~~~~~~ 345 (657)
.+..|.|||+|.+.++|..|.+.+... ....+.++.+|+..-|.=.||..+..+
T Consensus 54 ------------------------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~v~nlp~~~t~ 109 (284)
T 3smz_A 54 ------------------------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQ 109 (284)
T ss_dssp ------------------------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCSCEEEEESCCTTCCH
T ss_pred ------------------------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCCCEEEEcCCCCcCCH
Confidence 012579999999999999999876544 345677888888888999999888766
Q ss_pred HHHHHHH
Q 006191 346 RWISKIV 352 (657)
Q Consensus 346 r~~R~~~ 352 (657)
..++.++
T Consensus 110 ~~l~~~f 116 (284)
T 3smz_A 110 QQFEELV 116 (284)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666543
No 156
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=95.39 E-value=0.05 Score=49.91 Aligned_cols=67 Identities=15% Similarity=0.218 Sum_probs=52.0
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCh
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~ 266 (657)
...++|.|.|+|.+.+ .++|+++|+++ |.|.++.+.+|.
T Consensus 93 ~~~~~l~v~nl~~~~t---~~~l~~~F~~~--G~i~~v~~~~~~------------------------------------ 131 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCT---ENDIRVMFSSF--GQIEECRILRGP------------------------------------ 131 (175)
T ss_dssp GGGSEEEEESCCTTCC---HHHHHHHHGGG--SCEEEEEEEECT------------------------------------
T ss_pred CCCCeEEEcCCCCcCC---HHHHHHHHHhC--CCEEEEEEEECC------------------------------------
Confidence 3568999999999766 47899999988 567777775531
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC
Q 006191 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST 318 (657)
Q Consensus 267 i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~ 318 (657)
+.++.|.|||+|++.++|..|.+.++..
T Consensus 132 ------------------------~g~~~g~afV~f~~~~~A~~A~~~l~g~ 159 (175)
T 3nmr_A 132 ------------------------DGLSRGCAFVTFTTRAMAQTAIKAMHQA 159 (175)
T ss_dssp ------------------------TSCEEEEEEEEESSHHHHHHHHHHHTTS
T ss_pred ------------------------CCCEEEEEEEEECCHHHHHHHHHHhcCC
Confidence 0123689999999999999999887654
No 157
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=95.35 E-value=0.048 Score=49.72 Aligned_cols=79 Identities=15% Similarity=0.297 Sum_probs=56.8
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....++|.|.|+|.+.+ .++|+++|+++ |.|.++.+.+|.
T Consensus 86 ~~~~~~l~v~nl~~~~t---~~~l~~~f~~~--G~i~~~~i~~~~----------------------------------- 125 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTIT---DDQLDTIFGKY--GSIVQKNILRDK----------------------------------- 125 (168)
T ss_dssp TTTTCEEEEESCCTTCC---HHHHHHHHTSS--SCEEEEEEEECT-----------------------------------
T ss_pred cCCCCCEEEeCCCCCCC---HHHHHHhhhcC--CcEEEEEEEEcC-----------------------------------
Confidence 34568999999998765 47899999887 567777665531
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCCC----CCceeccC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTNP----TDWLLEQA 328 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~~----~~~~v~~A 328 (657)
.+.++.|.|||+|++.++|..|.+.++...- ..+.|+.|
T Consensus 126 ------------------------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 126 ------------------------LTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp ------------------------TTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred ------------------------CCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 0112368999999999999999998766532 44555443
No 158
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=95.31 E-value=0.047 Score=52.16 Aligned_cols=77 Identities=13% Similarity=0.144 Sum_probs=56.3
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChH
Q 006191 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (657)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i 267 (657)
..++|.|.|||.+.+ .++|+++|+++ |.|.++.+.+|.
T Consensus 124 ~~~~l~v~nlp~~~t---~~~l~~~f~~~--G~v~~v~i~~~~------------------------------------- 161 (216)
T 2qfj_A 124 AFNRIYVASVHQDLS---DDDIKSVFEAF--GKIKSATLARDP------------------------------------- 161 (216)
T ss_dssp TSCEEEEECCCTTCC---HHHHHHHHTTS--SCEEEEEEEECT-------------------------------------
T ss_pred CCcEEEEeCCCCcCC---HHHHHHHHhcc--CCeeEEEEEecC-------------------------------------
Confidence 457999999998765 47899999987 678787776541
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeccC
Q 006191 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (657)
Q Consensus 268 ~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~A 328 (657)
...+..|.|||+|++.++|..|.+.++... ...+.|+.|
T Consensus 162 ----------------------~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 162 ----------------------TTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp ----------------------TTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred ----------------------CCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 001236899999999999999999776542 344555443
No 159
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=95.31 E-value=0.075 Score=51.64 Aligned_cols=37 Identities=8% Similarity=0.107 Sum_probs=28.9
Q ss_pred CCcceEEEEeccCC-CCCCchHHHHHHHhhhhCCCcceeeEEE
Q 006191 186 QPHQFTVLVRSIPV-SAGSTIGDTVENFFKEFHPTTYLSHTVI 227 (657)
Q Consensus 186 ~~~~~TVlV~~IP~-~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 227 (657)
.+..+||.|.|||. +.+ .++|+++|+++ |.|.++.+.
T Consensus 31 ~~~~~~l~V~nLp~~~~t---e~~L~~~F~~~--G~i~~v~i~ 68 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVT---PQSLFILFGVY--GDVQRVKIL 68 (229)
T ss_dssp CCCCSEEEEESCCTTTCC---HHHHHHHHHHH--TCEEEEEEC
T ss_pred CCCCCEEEEeCCCcccCC---HHHHHHHHHhC--CCeEEEEEE
Confidence 34578999999998 766 48899999988 567676663
No 160
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=95.24 E-value=0.015 Score=48.72 Aligned_cols=39 Identities=21% Similarity=0.315 Sum_probs=30.5
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcc
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQ 229 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~ 229 (657)
....+||.|.|||.+.+ .++|+++|+++ |.|.++.+.+|
T Consensus 6 ~~~~~~l~V~nLp~~~t---~~~l~~~F~~~--G~i~~v~i~~~ 44 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMD---ETEIRSFFARY--GSVKEVKIITD 44 (102)
T ss_dssp EEEEEEEEEECCCTTCC---HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC---HHHHHHHHHhC--CCeEEEEEEEC
Confidence 34578999999998766 47899999988 66777776553
No 161
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.07 E-value=0.052 Score=44.46 Aligned_cols=35 Identities=14% Similarity=0.047 Sum_probs=26.6
Q ss_pred CcEEEEEecCHHHHHHHHHhccc-C--CCCCceeccCC
Q 006191 295 LQAAFVSFKSRYGAAIAFHMQQS-T--NPTDWLLEQAP 329 (657)
Q Consensus 295 ~~~AFVtF~s~~~a~~~~q~~~~-~--~~~~~~v~~AP 329 (657)
.+.|||+|++.++|..|.+.++. . +...+.|+.|-
T Consensus 44 ~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 44 SGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 81 (93)
T ss_dssp TTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence 47999999999999999987765 3 33456666554
No 162
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=95.06 E-value=0.034 Score=54.29 Aligned_cols=80 Identities=5% Similarity=0.066 Sum_probs=57.3
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChH
Q 006191 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (657)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i 267 (657)
..+||.|.|||.+.++ +.|+++|+++....|.++.+.+|-.
T Consensus 67 ~~~~lfVgnL~~~~te---~~L~~~F~~~G~~~v~~v~i~~d~~------------------------------------ 107 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTD---EDLTEAVHSLGVNDILEIKFFENRA------------------------------------ 107 (229)
T ss_dssp --CEEEEESCCTTCCH---HHHHHHHHTTTCCCEEEEEEEECTT------------------------------------
T ss_pred CccEEEEeCCCCCCCH---HHHHHHHHHHCCcceEEEEEEecCC------------------------------------
Confidence 4579999999997764 7899999988322788888876410
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeccCC
Q 006191 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAP 329 (657)
Q Consensus 268 ~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~AP 329 (657)
..+..|.|||+|++.++|..|.+.+.... ...+.|+.|-
T Consensus 108 -----------------------tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~ 148 (229)
T 3q2s_C 108 -----------------------NGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVN 148 (229)
T ss_dssp -----------------------TCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECC
T ss_pred -----------------------CCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECC
Confidence 01235899999999999999998765442 3456666653
No 163
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=94.93 E-value=0.072 Score=50.23 Aligned_cols=34 Identities=9% Similarity=0.095 Sum_probs=26.1
Q ss_pred cceEEEEeccCC-CCCCchHHHHHHHhhhhCCCcceeeEE
Q 006191 188 HQFTVLVRSIPV-SAGSTIGDTVENFFKEFHPTTYLSHTV 226 (657)
Q Consensus 188 ~~~TVlV~~IP~-~~~~~~~~~l~~~F~~~~p~~v~~v~~ 226 (657)
+++||.|.|||. +.+ .++|+++|+++ |.|.++.+
T Consensus 2 ~~~~l~v~nlp~~~~~---~~~l~~~F~~~--G~i~~v~i 36 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVT---PQSLFILFGVY--GDVQRVKI 36 (198)
T ss_dssp CCCEEEEECCCSSSCC---HHHHHHHHHTT--CCCSEEEC
T ss_pred CCcEEEEeCCCcccCC---HHHHHHHHHhc--CCEEEEEE
Confidence 467999999998 766 47899999887 45655544
No 164
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=94.91 E-value=0.085 Score=50.47 Aligned_cols=35 Identities=14% Similarity=0.105 Sum_probs=27.1
Q ss_pred CcceEEEEeccC-CCCCCchHHHHHHHhhhhCCCcceeeEE
Q 006191 187 PHQFTVLVRSIP-VSAGSTIGDTVENFFKEFHPTTYLSHTV 226 (657)
Q Consensus 187 ~~~~TVlV~~IP-~~~~~~~~~~l~~~F~~~~p~~v~~v~~ 226 (657)
++..||.|.||| .+.+ .+.|++.|+++ |.|.++.+
T Consensus 2 ~~~~~l~V~nL~~~~~~---~~~L~~~F~~~--G~v~~v~i 37 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMN---CDRVFNVFCLY--GNVEKVKF 37 (205)
T ss_dssp CCCSEEEEECCCTTTCC---HHHHHHHHTTT--SCEEEEEE
T ss_pred CCCCEEEEeCCCcccCC---HHHHHHHHHhc--CCeEEEEE
Confidence 346799999999 5655 37899999987 67777655
No 165
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=94.91 E-value=0.077 Score=48.12 Aligned_cols=69 Identities=13% Similarity=0.277 Sum_probs=52.2
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCh
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~ 266 (657)
....+|.|.|+|.+.+ .++|+++|+++ |.+.++.+.+|.
T Consensus 86 ~~~~~l~v~nl~~~~t---~~~l~~~f~~~--G~i~~~~i~~~~------------------------------------ 124 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMT---QKELEQLFSQY--GRIITSRILVDQ------------------------------------ 124 (167)
T ss_dssp GTTCEEEEESCCTTCC---HHHHHHHHGGG--SCEEEEEEEECT------------------------------------
T ss_pred CCCCcEEECCCCCcCC---HHHHHHHHHhc--CCEeEEEEEecC------------------------------------
Confidence 3467999999998765 47899999988 567777665531
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC
Q 006191 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN 319 (657)
Q Consensus 267 i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~ 319 (657)
.++++.|.|||+|++.++|..|.+.++...
T Consensus 125 -----------------------~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 154 (167)
T 1fxl_A 125 -----------------------VTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 154 (167)
T ss_dssp -----------------------TTCCEEEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred -----------------------CCCCccceEEEEeCCHHHHHHHHHHhcCCc
Confidence 011236899999999999999999876553
No 166
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=94.86 E-value=0.059 Score=49.07 Aligned_cols=75 Identities=13% Similarity=0.191 Sum_probs=53.7
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChHH
Q 006191 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVD 268 (657)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i~ 268 (657)
..+|.|.|+|.+.+ .++|+++|+++ |.|.++.+.+|.
T Consensus 87 ~~~l~V~nlp~~~t---~~~l~~~F~~~--G~i~~~~i~~~~-------------------------------------- 123 (167)
T 2cjk_A 87 TGKIFVGGIGPDVR---PKEFEEFFSQW--GTIIDAQLMLDK-------------------------------------- 123 (167)
T ss_dssp CEEEEEEEECTTCC---HHHHHHHHHTT--SCCSEEECCCSS--------------------------------------
T ss_pred CCeEEECCCCCCCC---HHHHHHHHHhC--ccEEEEEEEEcC--------------------------------------
Confidence 57999999998766 47899999987 566666554421
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccC
Q 006191 269 HYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (657)
Q Consensus 269 ~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 328 (657)
..+++.|.|||+|++.++|..|.+ .... ....+.|+.|
T Consensus 124 ---------------------~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 124 ---------------------DTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRA 163 (167)
T ss_dssp ---------------------SSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEEC
T ss_pred ---------------------CCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeec
Confidence 011246899999999999999998 3221 3456677766
No 167
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=94.80 E-value=0.036 Score=48.14 Aligned_cols=86 Identities=9% Similarity=0.096 Sum_probs=62.0
Q ss_pred cceEEEEeccC--CCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 188 HQFTVLVRSIP--VSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 188 ~~~TVlV~~IP--~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
.+++|.++|+- .+.++++.+.|++.|+++ |.|.++.+..|... +
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~--G~V~~v~I~~~~~~--------------------------------~ 64 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKF--GAVNRVIIYQEKQG--------------------------------E 64 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTT--SCEEEEEEEEEEES--------------------------------S
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhcc--CCEeEEEEeecCCC--------------------------------c
Confidence 46899999995 344567889999999987 78889888775210 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPE 330 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~ 330 (657)
....+..|.|||+|.+.++|..|.+.++.. ....+.++.+|+
T Consensus 65 -----------------------~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 65 -----------------------EEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp -----------------------STTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred -----------------------ccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence 001122589999999999999999988765 344566666654
No 168
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=94.77 E-value=0.042 Score=52.14 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=29.3
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcc
Q 006191 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQ 229 (657)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~ 229 (657)
.+||.|.|+|.+.+ .+.|+++|+++ |.|.++.+.++
T Consensus 109 ~~~l~V~nLp~~~t---~~~L~~~F~~~--G~v~~v~i~~~ 144 (193)
T 2voo_A 109 NRSVYIKGFPTDAT---LDDIKEWLEDK--GQVLNIQMRRT 144 (193)
T ss_dssp HTEEEEECCCTTCC---HHHHHHHHTTS--CCEEEEEEEEC
T ss_pred cCEEEecCCCCcCC---HHHHHHHHhcC--CCEEEEEEEEC
Confidence 47999999998765 48899999987 66888877653
No 169
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=94.64 E-value=0.06 Score=49.28 Aligned_cols=78 Identities=13% Similarity=0.223 Sum_probs=55.9
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCh
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~ 266 (657)
...++|.|.|+|.+.+ .++|+++|+++ |.+.++.+.+|.
T Consensus 92 ~~~~~l~v~nlp~~~t---~~~l~~~f~~~--G~v~~v~i~~~~------------------------------------ 130 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLN---DDQVKELLTSF--GPLKAFNLVKDS------------------------------------ 130 (172)
T ss_dssp TTTTCEEEECCCTTCC---HHHHHHHHHTT--SCEEEEEEEECT------------------------------------
T ss_pred CCCCEEEEEcCCCcCC---HHHHHHHHHhc--CCceEEEEEecC------------------------------------
Confidence 4468999999999765 47899999987 667777775531
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeccC
Q 006191 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (657)
Q Consensus 267 i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~A 328 (657)
..+++.|.|||+|++.++|..|.+.++... ...+.|+.|
T Consensus 131 -----------------------~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 131 -----------------------ATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp -----------------------TTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred -----------------------CCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 001236899999999999999998765542 334445443
No 170
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=94.32 E-value=0.061 Score=44.27 Aligned_cols=35 Identities=20% Similarity=0.173 Sum_probs=27.1
Q ss_pred CcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCC
Q 006191 295 LQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (657)
Q Consensus 295 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 329 (657)
.|.|||+|.+.++|..|.+.++.. ....+.|+.|.
T Consensus 53 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 53 KGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 689999999999999999876543 34456777664
No 171
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=93.22 E-value=0.0084 Score=51.72 Aligned_cols=36 Identities=19% Similarity=0.041 Sum_probs=26.0
Q ss_pred CCcEEEEEecCHHHHHHHHHhcccCC--CCCceeccCC
Q 006191 294 ELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAP 329 (657)
Q Consensus 294 ~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~AP 329 (657)
..|.|||+|++.++|..|.+.+.... ...+.|+.|-
T Consensus 56 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (116)
T 2lcw_A 56 LKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 93 (116)
Confidence 36899999999999999988665432 3445555553
No 172
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=94.16 E-value=0.15 Score=51.22 Aligned_cols=99 Identities=19% Similarity=0.304 Sum_probs=69.4
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCh
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~ 266 (657)
...+||.|.|||.+.+ .+.|+++|+++ |.|.++.+..|.
T Consensus 39 ~~~~~l~V~nLp~~~t---~~~l~~~F~~~--G~i~~v~i~~~~------------------------------------ 77 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYN---QNKVYKYFKHC--GPIIHVDVADSL------------------------------------ 77 (292)
T ss_dssp ---CEEEEEEECTTCC---HHHHHHHHGGG--SCEEEEEEEECT------------------------------------
T ss_pred CCCCEEEEeCCCCCCC---HHHHHHHHHhc--CCeEEEEEEECC------------------------------------
Confidence 4578999999999776 47899999988 567777775531
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCCCCCcccCCCCCchH
Q 006191 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEPNDVYWPFFSASFM 344 (657)
Q Consensus 267 i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P~DIiW~NL~~~~~ 344 (657)
. . ..|.|||+|.+.++|..|.+ +... +...+.++.++ ..-|.=.||.....
T Consensus 78 -----------------------~-~-~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~~-~~~l~v~nlp~~~t 130 (292)
T 2ghp_A 78 -----------------------K-K-NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHLT-ECTLWMTNFPPSYT 130 (292)
T ss_dssp -----------------------T-S-SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEECC-SCEEEEECCCTTCC
T ss_pred -----------------------C-C-CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEECC-CCEEEEECCCCCCC
Confidence 0 1 25899999999999999996 3322 23445666663 56677789987766
Q ss_pred HHHHHHHHH
Q 006191 345 RRWISKIVV 353 (657)
Q Consensus 345 ~r~~R~~~~ 353 (657)
+..++.++.
T Consensus 131 ~~~l~~~f~ 139 (292)
T 2ghp_A 131 QRNIRDLLQ 139 (292)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665443
No 173
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=94.14 E-value=0.1 Score=48.91 Aligned_cols=79 Identities=11% Similarity=0.150 Sum_probs=55.3
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCh
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~ 266 (657)
...++|.|.|||.+.+ .++|+++|+++ |.|.++.+.+|.
T Consensus 102 ~~~~~l~V~nLp~~~t---~~~l~~~F~~~--G~i~~v~i~~~~------------------------------------ 140 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTE---EHHLRDYFEQY--GKIEVIEIMTDR------------------------------------ 140 (196)
T ss_dssp -CCSEEEEECCTTTCC---HHHHHHHHTTT--SCEEEEEEEECT------------------------------------
T ss_pred CCcceEEEeCCCCCCC---HHHHHHHHhcC--CCeEEEEEeecC------------------------------------
Confidence 4568999999999766 47899999987 677777776541
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCC
Q 006191 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPE 330 (657)
Q Consensus 267 i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~ 330 (657)
...++.|.|||+|++.++|..|.+. ... +...+.|+.|-.
T Consensus 141 -----------------------~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~ 182 (196)
T 1l3k_A 141 -----------------------GSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALS 182 (196)
T ss_dssp -----------------------TTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-
T ss_pred -----------------------CCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCC
Confidence 0112368999999999999999875 222 224456666543
No 174
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=94.04 E-value=0.21 Score=45.79 Aligned_cols=72 Identities=14% Similarity=0.175 Sum_probs=53.4
Q ss_pred eEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChHHH
Q 006191 190 FTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVDH 269 (657)
Q Consensus 190 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i~~ 269 (657)
.+|.|.|+|.+.+ .+.|++.|+++ |.|.++.+..+
T Consensus 47 l~l~VgNL~~~vt---ed~L~~~Fs~f--G~V~~V~i~~k---------------------------------------- 81 (164)
T 1sjr_A 47 LRIIVENLFYPVT---LDVLHQIFSKF--GTVLKIITFTK---------------------------------------- 81 (164)
T ss_dssp EEEEECSCCSCCC---HHHHHHHHHHH--SCEEEEEEEES----------------------------------------
T ss_pred EEEEEeCcCCCCC---HHHHHHHHHhc--CCEEEEEEEeC----------------------------------------
Confidence 5678999998765 47899999998 67777765210
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCCC----CCceeccCC
Q 006191 270 YGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTNP----TDWLLEQAP 329 (657)
Q Consensus 270 ~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~~----~~~~v~~AP 329 (657)
+..+.|||+|++.++|..|.+.+....- ..++|+.|-
T Consensus 82 -----------------------~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 82 -----------------------NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp -----------------------SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred -----------------------CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 0147999999999999999998765532 456676663
No 175
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=94.01 E-value=0.091 Score=50.40 Aligned_cols=74 Identities=15% Similarity=0.189 Sum_probs=55.5
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChHH
Q 006191 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVD 268 (657)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i~ 268 (657)
..+|.|.|+|.+.++ ++|+++|+++ |.|.++.+.+|.
T Consensus 103 ~~~l~v~nl~~~~t~---~~l~~~F~~~--G~i~~~~i~~d~-------------------------------------- 139 (213)
T 4f02_A 103 VGNIFIKNLDKSIDN---KALYDTFSAF--GNILSCKVVCDE-------------------------------------- 139 (213)
T ss_dssp TTEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEET--------------------------------------
T ss_pred cccceECCcccccHH---HHHHHHHhhc--CCeEEEEeeccC--------------------------------------
Confidence 468999999997664 7899999988 677777775531
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeccC
Q 006191 269 HYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (657)
Q Consensus 269 ~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~A 328 (657)
. ...|.|||+|++.++|..|.+.++... ...+.|+.|
T Consensus 140 ---------------------~--~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a 178 (213)
T 4f02_A 140 ---------------------N--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 178 (213)
T ss_dssp ---------------------T--EEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ---------------------C--CCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 0 125899999999999999998776442 345566655
No 176
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=93.86 E-value=0.13 Score=48.16 Aligned_cols=78 Identities=12% Similarity=0.191 Sum_probs=57.0
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCh
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~ 266 (657)
...++|.|.|+|.+.+ .++|+++|+++ |.|.++.+.+|.
T Consensus 112 ~~~~~l~v~nl~~~~~---~~~l~~~f~~~--G~v~~~~~~~~~------------------------------------ 150 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLN---DDQVKELLTSF--GPLKAFNLVKDS------------------------------------ 150 (198)
T ss_dssp CCCCEEEEECCCTTCC---HHHHHHHHHTB--SCEEEEEEEECT------------------------------------
T ss_pred CCCCEEEEeCCCCCCC---HHHHHHHHHHc--CCccEEEEeecC------------------------------------
Confidence 4568999999998765 47899999987 567777665531
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccC
Q 006191 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (657)
Q Consensus 267 i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 328 (657)
...++.|.|||+|.+.++|..|.+.++.. ....+.|+.|
T Consensus 151 -----------------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 151 -----------------------ATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp -----------------------TTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred -----------------------CCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 00123689999999999999999876554 2345666655
No 177
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=93.83 E-value=0.14 Score=55.14 Aligned_cols=84 Identities=10% Similarity=0.133 Sum_probs=59.5
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChHH
Q 006191 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVD 268 (657)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i~ 268 (657)
..||.|.|||.+.++ +.|+++|+++ |.|.+|.+++|.
T Consensus 102 ~~~lfV~nL~~~~te---~~L~~~F~~~--G~I~~v~i~~d~-------------------------------------- 138 (437)
T 3pgw_S 102 FKTLFVARVNYDTTE---SKLRREFEVY--GPIKRIHMVYSK-------------------------------------- 138 (437)
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHHc--CCeeEEEeeccC--------------------------------------
Confidence 479999999997664 7899999987 667777765531
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeccCCCCCCccc
Q 006191 269 HYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAPEPNDVYW 336 (657)
Q Consensus 269 ~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~AP~P~DIiW 336 (657)
...+..|.|||+|.+..+|..|.+.++... ...+.|+.|-....=-|
T Consensus 139 ---------------------~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~~~~~ 187 (437)
T 3pgw_S 139 ---------------------RSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGW 187 (437)
T ss_pred ---------------------CCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCCCCCC
Confidence 011236899999999999999998876542 34566666644333334
No 178
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=93.55 E-value=0.21 Score=39.97 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=21.5
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhh
Q 006191 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEF 216 (657)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~ 216 (657)
..+||.|.|||.+.+ .++|+++|+++
T Consensus 5 ~~~~l~V~nLp~~~t---~~~l~~~F~~~ 30 (87)
T 2hzc_A 5 SARRLYVGNIPFGIT---EEAMMDFFNAQ 30 (87)
T ss_dssp GGGEEEEESCCTTCC---HHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHH
Confidence 468999999999765 37889998876
No 179
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=93.42 E-value=0.39 Score=43.63 Aligned_cols=57 Identities=9% Similarity=0.123 Sum_probs=36.5
Q ss_pred CcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCC------CCCCcccCCCCCchHHHHHHHHH
Q 006191 295 LQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP------EPNDVYWPFFSASFMRRWISKIV 352 (657)
Q Consensus 295 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP------~P~DIiW~NL~~~~~~r~~R~~~ 352 (657)
.|.|||+|.++++|..|. .+... ....+.++.+. .+.-+.=.||..+..+..++..+
T Consensus 51 ~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f 115 (172)
T 2g4b_A 51 KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELL 115 (172)
T ss_dssp TTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHH
Confidence 589999999999999998 44332 22333444332 23556777887766666666544
No 180
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=93.23 E-value=0.43 Score=47.59 Aligned_cols=39 Identities=13% Similarity=0.246 Sum_probs=25.6
Q ss_pred CCcceEEEEeccCCCCCC-chHHHHHHHhhhhCCCcceeeEE
Q 006191 186 QPHQFTVLVRSIPVSAGS-TIGDTVENFFKEFHPTTYLSHTV 226 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~-~~~~~l~~~F~~~~p~~v~~v~~ 226 (657)
....+||.|.|||.+.++ ++++.|.++|+++ |.|.++.+
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~--G~i~~v~~ 45 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQF--GQILDILV 45 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhcc--CCeEEEEE
Confidence 345789999999986553 3333355788776 55655544
No 181
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=92.99 E-value=0.18 Score=50.53 Aligned_cols=81 Identities=9% Similarity=-0.019 Sum_probs=59.0
Q ss_pred CcceEEEEeccCCCC-CCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 187 PHQFTVLVRSIPVSA-GSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~-~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
....+|.|.|+|.+. + .+.|+++|+++ |.|.++.+.+|.
T Consensus 182 ~~~~~l~v~nlp~~~~~---~~~l~~~f~~~--G~i~~v~i~~~~----------------------------------- 221 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFND---VDALCRALSAV--HSPTFCQLACGQ----------------------------------- 221 (284)
T ss_dssp TSCSEEEEECCCTTCCC---HHHHHHHTCSS--SCCSEEEEEECS-----------------------------------
T ss_pred CCccEEEEecCCcccCC---HHHHHHHhhCC--CCeEEEEEEECC-----------------------------------
Confidence 456799999999873 4 47899999987 567777665431
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeccCCCCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAPEPN 332 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~AP~P~ 332 (657)
++++.|.|||+|++.++|..|.+.++... ...+.|..|.+..
T Consensus 222 -------------------------~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 222 -------------------------DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp -------------------------SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSS
T ss_pred -------------------------CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCC
Confidence 01236899999999999999999776543 3456777775443
No 182
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=92.91 E-value=0.27 Score=48.08 Aligned_cols=66 Identities=17% Similarity=0.181 Sum_probs=49.8
Q ss_pred CCcceEEEEeccCCCCC------CchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 006191 186 QPHQFTVLVRSIPVSAG------STIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKN 259 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~------~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk 259 (657)
....+||.|.|||.+.+ +...+.|+++|+++ |.|.++.++.
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f--G~I~~v~v~~------------------------------- 177 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL--GDIDRIRYVE------------------------------- 177 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT--SCEEEEEEEG-------------------------------
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHcc--CCEEEEEEEC-------------------------------
Confidence 34568999999998642 11368899999988 6777776531
Q ss_pred CCccCChHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC
Q 006191 260 QQRKVDLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST 318 (657)
Q Consensus 260 ~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~ 318 (657)
..|.|||+|.++++|..|.+.+...
T Consensus 178 ----------------------------------~kG~AFV~F~~~~~Ae~A~~am~g~ 202 (240)
T 3u1l_A 178 ----------------------------------SKNCGFVKFKYQANAEFAKEAMSNQ 202 (240)
T ss_dssp ----------------------------------GGTEEEEEESSHHHHHHHHHHHTTC
T ss_pred ----------------------------------CCCEEEEEeCCHHHHHHHHHHhCCC
Confidence 0379999999999999998876543
No 183
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=92.84 E-value=0.17 Score=45.06 Aligned_cols=35 Identities=17% Similarity=0.118 Sum_probs=26.1
Q ss_pred CCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccC
Q 006191 294 ELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (657)
Q Consensus 294 ~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 328 (657)
..|.|||+|.+..+|..|.+.++.. ....+.|+.|
T Consensus 91 ~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 127 (143)
T 3egn_A 91 MKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFA 127 (143)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEEC
T ss_pred cccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4689999999999999999876543 2344555554
No 184
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=92.80 E-value=0.23 Score=49.17 Aligned_cols=76 Identities=17% Similarity=0.250 Sum_probs=55.7
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChH
Q 006191 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (657)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i 267 (657)
...+|.|.|+|.+.+ .+.|+++|+++ |.|.++.+.+|-
T Consensus 95 ~~~~l~v~nl~~~~t---~~~l~~~F~~~--G~i~~v~i~~~~------------------------------------- 132 (261)
T 3sde_A 95 HGAALTVKNLSPVVS---NELLEQAFSQF--GPVEKAVVVVDD------------------------------------- 132 (261)
T ss_dssp CSSEEEEESCCTTCC---HHHHHHHHGGG--SCEEEEEEEEET-------------------------------------
T ss_pred cCCcccccCCCCCCC---HHHHHHHHHhc--CCeEEEEeeeCC-------------------------------------
Confidence 457999999998765 47899999987 677777776531
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC------CCCCceeccC
Q 006191 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST------NPTDWLLEQA 328 (657)
Q Consensus 268 ~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~------~~~~~~v~~A 328 (657)
..++.|.|||+|.+.++|..|.+.+.+. .+..+.|++|
T Consensus 133 -----------------------~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~ 176 (261)
T 3sde_A 133 -----------------------RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPM 176 (261)
T ss_dssp -----------------------TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEEC
T ss_pred -----------------------CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeec
Confidence 0123689999999999999999887432 2445555544
No 185
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.66 E-value=0.31 Score=41.80 Aligned_cols=23 Identities=9% Similarity=0.205 Sum_probs=20.6
Q ss_pred cEEEEEecCHHHHHHHHHhcccC
Q 006191 296 QAAFVSFKSRYGAAIAFHMQQST 318 (657)
Q Consensus 296 ~~AFVtF~s~~~a~~~~q~~~~~ 318 (657)
|.|||+|++.++|..|.+.++..
T Consensus 64 gfaFV~f~~~~~A~~Ai~~lnG~ 86 (114)
T 2cq2_A 64 PYSFARYRTTEESKRAYVTLNGK 86 (114)
T ss_dssp SCEEEEESSHHHHHHHHHHTTTC
T ss_pred CEEEEEECCHHHHHHHHHHhCCC
Confidence 79999999999999999887654
No 186
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.53 E-value=0.39 Score=40.79 Aligned_cols=45 Identities=13% Similarity=-0.042 Sum_probs=34.7
Q ss_pred CCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCCCCCcccCC
Q 006191 294 ELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEPNDVYWPF 338 (657)
Q Consensus 294 ~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P~DIiW~N 338 (657)
..|.|||+|+++++|..|.+.++.. ....+.++.|.+..|..++.
T Consensus 63 ~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~ 109 (112)
T 2dit_A 63 PDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQSGP 109 (112)
T ss_dssp TTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCCSSCCC
T ss_pred CCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCcccCC
Confidence 3699999999999999999887654 34567788887666665544
No 187
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=92.29 E-value=0.31 Score=40.97 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=28.0
Q ss_pred CCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCC
Q 006191 294 ELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (657)
Q Consensus 294 ~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 329 (657)
+.|.|||+|+++++|+.|.+.++.. ....+.++.+|
T Consensus 67 ~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 67 LVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp SEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred ccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence 4699999999999999999887654 23455666665
No 188
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=92.00 E-value=0.35 Score=45.33 Aligned_cols=73 Identities=14% Similarity=0.165 Sum_probs=53.1
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCC-cceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPT-TYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~-~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
+...||.|.|+|.+.+ .+.|+++|+++ | .+.++.+..+
T Consensus 118 ~~~~~l~v~nl~~~~~---~~~l~~~f~~~--G~~v~~v~i~~~------------------------------------ 156 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVS---EEDLKVLFSSN--GGVVKGFKFFQK------------------------------------ 156 (198)
T ss_dssp CCCCEEEECCCCTTCC---HHHHHHHHHHT--TSCCCEEEESST------------------------------------
T ss_pred CCccEEEEeCCCCCCC---HHHHHHHHHHc--CCCceEEEEEeC------------------------------------
Confidence 4578999999998765 47899999988 5 5655544210
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC---CCCceeccC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN---PTDWLLEQA 328 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~---~~~~~v~~A 328 (657)
..|.|||+|++.++|..|.+.++... ...+.++.|
T Consensus 157 ----------------------------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 194 (198)
T 1qm9_A 157 ----------------------------DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 194 (198)
T ss_dssp ----------------------------TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEE
T ss_pred ----------------------------CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEee
Confidence 03799999999999999999776543 334555544
No 189
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=91.81 E-value=0.32 Score=46.40 Aligned_cols=67 Identities=10% Similarity=0.083 Sum_probs=49.3
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcc--eeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCcc
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTY--LSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRK 263 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v--~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~k 263 (657)
.+..+|+.|.|||.+.+ .++|+++|+++ |.| .++.+..+
T Consensus 120 ~~p~~~l~v~NLp~~~t---~~~L~~~F~~~--G~v~~~~v~~~~~---------------------------------- 160 (205)
T 3tyt_A 120 QHPSNVLHFFNAPLEVT---EENFFEICDEL--GVKRPTSVKVFSG---------------------------------- 160 (205)
T ss_dssp CCCCSEEEEEEECTTCC---HHHHHHHHHHH--TCCCCSEEEECSC----------------------------------
T ss_pred CCCcceEEEeCCCCCCC---HHHHHHHHHhc--CCcceEEEEEEcC----------------------------------
Confidence 34567999999998766 37899999987 444 45544221
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC
Q 006191 264 VDLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST 318 (657)
Q Consensus 264 vd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~ 318 (657)
. .+..|.|||+|++.++|..|.+.++..
T Consensus 161 --------------------------~-~~~~g~gfV~f~~~~~A~~Ai~~lng~ 188 (205)
T 3tyt_A 161 --------------------------K-SERSSSGLLEWDSKSDALETLGFLNHY 188 (205)
T ss_dssp --------------------------C-SSSSEEEEEECSSHHHHHHHHHHHTTC
T ss_pred --------------------------C-CCCceEEEEEeCCHHHHHHHHHHhCCC
Confidence 0 112589999999999999999987654
No 190
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=91.80 E-value=0.2 Score=45.96 Aligned_cols=58 Identities=12% Similarity=0.103 Sum_probs=38.3
Q ss_pred CCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCC--------CCCcccCCCCCchHHHHHHHHH
Q 006191 294 ELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPE--------PNDVYWPFFSASFMRRWISKIV 352 (657)
Q Consensus 294 ~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~--------P~DIiW~NL~~~~~~r~~R~~~ 352 (657)
..|.|||+|.++++|..|.+ +... ....+.++.|.+ ..-|.=.||..+..+..++.++
T Consensus 53 ~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F 120 (175)
T 1fje_B 53 NRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVF 120 (175)
T ss_dssp TTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHC
T ss_pred cccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHH
Confidence 46899999999999999996 4322 233445554432 2347777887766666666544
No 191
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=91.75 E-value=0.49 Score=44.08 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=21.3
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhh
Q 006191 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEF 216 (657)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~ 216 (657)
.++||.|.|||.+.+ .++|+++|+++
T Consensus 3 ~~~~l~V~nLp~~~t---e~~l~~~F~~~ 28 (198)
T 2yh0_A 3 MARRLYVGNIPFGIT---EEAMMDFFNAQ 28 (198)
T ss_dssp -CCEEEEESCCTTCC---HHHHHHHHHHH
T ss_pred ceeEEEEcCCCCCCC---HHHHHHHHHHH
Confidence 468999999999776 47899999876
No 192
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=91.68 E-value=0.89 Score=39.53 Aligned_cols=37 Identities=22% Similarity=0.119 Sum_probs=28.8
Q ss_pred c-EEEEEecCHHHHHHHHHhcccCCC----CCceeccCCCCC
Q 006191 296 Q-AAFVSFKSRYGAAIAFHMQQSTNP----TDWLLEQAPEPN 332 (657)
Q Consensus 296 ~-~AFVtF~s~~~a~~~~q~~~~~~~----~~~~v~~AP~P~ 332 (657)
| .|||+|++.++|..|.+.++...- ..++|+.|-.++
T Consensus 62 Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 62 GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 6 599999999999999998876542 357788775444
No 193
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=91.60 E-value=0.51 Score=47.03 Aligned_cols=64 Identities=17% Similarity=0.301 Sum_probs=49.0
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
.+..+||.|.|||.+.+ .++|+++|+++ |.|.++.+..+
T Consensus 204 ~~~~~~l~v~nl~~~~~---~~~l~~~F~~~--G~i~~v~~~~~------------------------------------ 242 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETN---ELMLSMLFNQF--PGFKEVRLVPG------------------------------------ 242 (282)
T ss_pred CCCCCEEEEeCCCCcCC---HHHHHHHHHhc--CCeEEEEEecC------------------------------------
Confidence 34578999999998765 47899999887 56666555210
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST 318 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~ 318 (657)
..|.|||+|++.++|..|.+.++..
T Consensus 243 ----------------------------~~g~afV~f~~~~~A~~A~~~l~g~ 267 (282)
T 3pgw_A 243 ----------------------------RHDIAFVEFDNEVQAGAARDALQGF 267 (282)
T ss_pred ----------------------------CCcEEEEEeCCHHHHHHHHHHcCCc
Confidence 0279999999999999999987654
No 194
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=91.16 E-value=0.61 Score=45.01 Aligned_cols=74 Identities=14% Similarity=0.161 Sum_probs=53.9
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCC-cceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPT-TYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~-~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
+...||.|.|+|.+.+ .+.|+++|+++ | .|.++.+..+
T Consensus 149 ~~~~~l~V~nlp~~~t---~~~l~~~f~~~--G~~i~~v~i~~~------------------------------------ 187 (229)
T 2adc_A 149 PPSATLHLSNIPPSVS---EEDLKVLFSSN--GGVVKGFKFFQK------------------------------------ 187 (229)
T ss_dssp CSCSEEEEECCCTTCC---HHHHHHHHHTT--SCCEEEEEECSS------------------------------------
T ss_pred CCCCEEEEeCCCccCC---HHHHHHHHHHc--CCCeeEEEEEEC------------------------------------
Confidence 4568999999998765 47899999988 5 5655544210
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC---CCCceeccCC
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN---PTDWLLEQAP 329 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~---~~~~~v~~AP 329 (657)
..|.|||+|++.++|..|.+.+.... ...+.++.|-
T Consensus 188 ----------------------------~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 188 ----------------------------DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp ----------------------------STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred ----------------------------CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 13799999999999999999776542 3455666553
No 195
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=90.22 E-value=0.7 Score=40.57 Aligned_cols=73 Identities=14% Similarity=0.157 Sum_probs=52.9
Q ss_pred eEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChHHH
Q 006191 190 FTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVDH 269 (657)
Q Consensus 190 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i~~ 269 (657)
-.|.|.|+|.+.+ .+.|++.|+++ |.|.+|.+..+
T Consensus 29 L~I~V~NL~~~vt---e~~L~~lFs~y--G~V~~V~i~~~---------------------------------------- 63 (130)
T 3zzy_A 29 LRIIVENLFYPVT---LDVLHQIFSKF--GTVLKIITFTK---------------------------------------- 63 (130)
T ss_dssp EEEEEESCCSCCC---HHHHHHHHTTS--SCEEEEEEEEE----------------------------------------
T ss_pred EEEEECCCCCCCC---HHHHHHHHhCc--CCEEEEEEEcC----------------------------------------
Confidence 4677999998665 47899999988 67877765320
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCCC----CCceeccCCC
Q 006191 270 YGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTNP----TDWLLEQAPE 330 (657)
Q Consensus 270 ~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~~----~~~~v~~AP~ 330 (657)
.+ ...|||+|++.++|..|.+.+....- ..++++.|..
T Consensus 64 ----------------------~~-gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 64 ----------------------NN-QFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp ----------------------TT-EEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred ----------------------CC-CcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 01 23599999999999999998876532 4466776643
No 196
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=90.16 E-value=0.51 Score=43.12 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=27.4
Q ss_pred CCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCC
Q 006191 294 ELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (657)
Q Consensus 294 ~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 329 (657)
+.|.|||+|++.++|..|.+.++.. ....+.|+.|.
T Consensus 135 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 135 SKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred CceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 3689999999999999999976543 23456666663
No 197
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=89.51 E-value=0.61 Score=46.70 Aligned_cols=66 Identities=12% Similarity=0.166 Sum_probs=47.8
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCC-cceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCh
Q 006191 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPT-TYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (657)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~-~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~ 266 (657)
..++|.|.|||.+.+ .+.|+++|+++ | .|.++.+..+.
T Consensus 116 ~~~~l~v~nlp~~~t---~~~l~~~f~~~--G~~i~~v~i~~~~------------------------------------ 154 (292)
T 2ghp_A 116 TECTLWMTNFPPSYT---QRNIRDLLQDI--NVVALSIRLPSLR------------------------------------ 154 (292)
T ss_dssp CSCEEEEECCCTTCC---HHHHHHHHHHT--TCCCCEEECC---------------------------------------
T ss_pred CCCEEEEECCCCCCC---HHHHHHHHHHh--CCCeEEEEEEeCC------------------------------------
Confidence 468999999999765 47899999987 4 56665553210
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC
Q 006191 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST 318 (657)
Q Consensus 267 i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~ 318 (657)
. .+..|.|||+|.+.++|..|.+.++..
T Consensus 155 -------------------~-----~~~~g~afV~f~~~~~a~~A~~~l~g~ 182 (292)
T 2ghp_A 155 -------------------F-----NTSRRFAYIDVTSKEDARYCVEKLNGL 182 (292)
T ss_dssp ----------------------------CCEEEEECSSHHHHHHHHHHHTTC
T ss_pred -------------------C-----CCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 0 012589999999999999999876543
No 198
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=88.62 E-value=0.45 Score=40.76 Aligned_cols=35 Identities=14% Similarity=0.031 Sum_probs=26.5
Q ss_pred CcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCC
Q 006191 295 LQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (657)
Q Consensus 295 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 329 (657)
.|.|||+|++.++|..|.+.++.. ....+.++.+|
T Consensus 55 ~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 55 QGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp TCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred cEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 699999999999999999987654 23444555544
No 199
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.06 E-value=4.4 Score=33.66 Aligned_cols=45 Identities=13% Similarity=0.208 Sum_probs=29.8
Q ss_pred cEEEEEecCHHHHHHHHHh-cccCCCCCceeccCC--CCCCcccCCCC
Q 006191 296 QAAFVSFKSRYGAAIAFHM-QQSTNPTDWLLEQAP--EPNDVYWPFFS 340 (657)
Q Consensus 296 ~~AFVtF~s~~~a~~~~q~-~~~~~~~~~~v~~AP--~P~DIiW~NL~ 340 (657)
+.|.|||.+.+.|+.+.+. -+.-+...+.|.+.| +|+-+.-.+|.
T Consensus 48 ~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~~~~~~r~ll~gl~ 95 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQADHELHGAQLSLRPAPPRAPARLLLQGLP 95 (104)
T ss_dssp TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECCCCCCCCCCCCSCC
T ss_pred CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCCCCCcceEeeecCC
Confidence 7999999999999888775 222234555665544 45555555554
No 200
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=87.02 E-value=0.96 Score=37.95 Aligned_cols=36 Identities=14% Similarity=0.105 Sum_probs=27.8
Q ss_pred CCcEEEEEecCHHHHHHHHHhcccCC--CCCceeccCC
Q 006191 294 ELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAP 329 (657)
Q Consensus 294 ~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~AP 329 (657)
..|.|||+|++.++|..|.+.++... .+.++++.+|
T Consensus 58 ~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 58 GCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 36999999999999999999886553 3455566554
No 201
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.82 E-value=0.94 Score=37.71 Aligned_cols=35 Identities=14% Similarity=0.065 Sum_probs=26.7
Q ss_pred CcEEEEEecCHHHHHHHHHhcccCCCCCceeccCC
Q 006191 295 LQAAFVSFKSRYGAAIAFHMQQSTNPTDWLLEQAP 329 (657)
Q Consensus 295 ~~~AFVtF~s~~~a~~~~q~~~~~~~~~~~v~~AP 329 (657)
.|.|||+|++.++|..|.+.........++|+.|-
T Consensus 54 rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~ 88 (100)
T 2d9o_A 54 PGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLE 88 (100)
T ss_dssp SSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSS
T ss_pred CCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEcc
Confidence 58999999999999999987544444556666553
No 202
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.68 E-value=1.8 Score=35.21 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=26.1
Q ss_pred CcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCC
Q 006191 295 LQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (657)
Q Consensus 295 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 329 (657)
.|.|||+|++.++|..|.+.++.. ....+.|+.|-
T Consensus 49 ~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 49 RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp TTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 589999999999999999876543 23445666554
No 203
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=74.06 E-value=4 Score=34.94 Aligned_cols=36 Identities=19% Similarity=0.192 Sum_probs=27.1
Q ss_pred CcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCC
Q 006191 295 LQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPE 330 (657)
Q Consensus 295 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~ 330 (657)
.|.|||+|++.++|..|.+.+... ....+.|+.|-.
T Consensus 73 kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 73 RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 589999999999999999876544 335566665543
No 204
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=69.76 E-value=2.5 Score=28.14 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=16.7
Q ss_pred cCChHHHHHHHHHHHHHHHHH
Q 006191 263 KVDLVDHYGKRLENIEENSRL 283 (657)
Q Consensus 263 kvd~i~~~~~~l~~l~~~I~~ 283 (657)
|.|.|.|+++++..+.++|++
T Consensus 29 kkdliaylekeianlrkkiee 49 (49)
T 3he5_A 29 KKDLIAYLEKEIANLRKKIEE 49 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 458899999999999888753
No 205
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=51.83 E-value=13 Score=32.41 Aligned_cols=37 Identities=11% Similarity=0.291 Sum_probs=29.7
Q ss_pred eEEEEecc----CCCCCCchHHHHHHHhhhhCCCcceeeEEEcccc
Q 006191 190 FTVLVRSI----PVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTS 231 (657)
Q Consensus 190 ~TVlV~~I----P~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~ 231 (657)
..|.|.|+ |.+..+ +.|+++|+++ |+|.++.+..|-.
T Consensus 3 ~kI~VgnL~~~~~~~tte---~~Lk~~Fs~f--GeV~~~~li~Dp~ 43 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQD---ISIKNYFKKY--GEISHFEAFNDPN 43 (136)
T ss_dssp CEEEEEESSSSCCCCCCH---HHHHHHHHTT--SCCSEEEEEECTT
T ss_pred cEEEEeCCCCCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecCC
Confidence 47899999 887664 7899999987 6788888877743
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.18 E-value=11 Score=30.68 Aligned_cols=32 Identities=9% Similarity=0.048 Sum_probs=22.9
Q ss_pred cEEEEEecCHHHHHHHHHhcccC--CCCCceeccC
Q 006191 296 QAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (657)
Q Consensus 296 ~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 328 (657)
+.+||||++.++|..|.+ +... ..+.++|+.|
T Consensus 50 d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lk 83 (91)
T 2dnr_A 50 DKMWVTFLEGSSALNVLS-LNGKELLNRTITIALK 83 (91)
T ss_dssp SSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEEC
T ss_pred CCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeC
Confidence 348999999999999988 5433 2345666655
No 207
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=40.83 E-value=38 Score=29.71 Aligned_cols=61 Identities=3% Similarity=-0.131 Sum_probs=39.5
Q ss_pred CCCcEEEEEecCHHHHHHHHHhcccC------------CC---------CCceeccCCCCCCcccCCCCCchHHHHHHHH
Q 006191 293 HELQAAFVSFKSRYGAAIAFHMQQST------------NP---------TDWLLEQAPEPNDVYWPFFSASFMRRWISKI 351 (657)
Q Consensus 293 ~~~~~AFVtF~s~~~a~~~~q~~~~~------------~~---------~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~ 351 (657)
+..|.|||+|.+..+|..|.+..... .+ ........+....|+-.||.....+.-++.+
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 90 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRV 90 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 34799999999999999998654311 00 0111122334566888999888777777765
Q ss_pred HH
Q 006191 352 VV 353 (657)
Q Consensus 352 ~~ 353 (657)
+.
T Consensus 91 F~ 92 (158)
T 2kn4_A 91 FE 92 (158)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=40.36 E-value=19 Score=33.98 Aligned_cols=36 Identities=14% Similarity=0.103 Sum_probs=29.0
Q ss_pred CcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCC
Q 006191 295 LQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPE 330 (657)
Q Consensus 295 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~ 330 (657)
.|.+||+|++.++|..|.+.+... ..+.+.++.+|+
T Consensus 175 ~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 175 IVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred eeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 589999999999999999998765 345666777664
No 209
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=33.27 E-value=27 Score=35.79 Aligned_cols=22 Identities=9% Similarity=0.212 Sum_probs=20.1
Q ss_pred cEEEEEecCHHHHHHHHHhccc
Q 006191 296 QAAFVSFKSRYGAAIAFHMQQS 317 (657)
Q Consensus 296 ~~AFVtF~s~~~a~~~~q~~~~ 317 (657)
|.|||+|++.++|+.|.+.+..
T Consensus 57 gfaFV~f~~~~~A~~Ai~~lnG 78 (345)
T 3tht_A 57 PYSFARYRTTEESKRAYVTLNG 78 (345)
T ss_dssp SEEEEEESSHHHHHHHHHHTTT
T ss_pred CEEEEEECCHHHHHHHHHHhCC
Confidence 7999999999999999988754
No 210
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=32.25 E-value=32 Score=28.28 Aligned_cols=41 Identities=10% Similarity=0.050 Sum_probs=30.7
Q ss_pred cceEEEEecc--CCCCCC-----chHHHHHHHhhhhCCCcceeeEEEccc
Q 006191 188 HQFTVLVRSI--PVSAGS-----TIGDTVENFFKEFHPTTYLSHTVIHQT 230 (657)
Q Consensus 188 ~~~TVlV~~I--P~~~~~-----~~~~~l~~~F~~~~p~~v~~v~~~~~~ 230 (657)
.++.|.++|+ |.+..+ ++.+.|++.|+++ |.|.++.+.+|.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~--G~V~~v~i~~~~ 51 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY--GLVKSIEIPRPV 51 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT--SCEEEEECCCCB
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc--CCEEEEEEeccC
Confidence 4578999998 443322 3668899999987 789999888775
No 211
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.61 E-value=49 Score=27.26 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=27.6
Q ss_pred CCcceEEEEeccCCCC----C----CchHHHHHHHhhhhCCCcceeeEE
Q 006191 186 QPHQFTVLVRSIPVSA----G----STIGDTVENFFKEFHPTTYLSHTV 226 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~----~----~~~~~~l~~~F~~~~p~~v~~v~~ 226 (657)
.....||.++|+.... + +.+.+.|+++|+++ |.|.++.+
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~--G~v~~v~i 58 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF--GQIRKLLL 58 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT--SCCSEEEE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc--CCEeEEEE
Confidence 3457899999995421 1 12468899999988 67888855
No 212
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.52 E-value=31 Score=28.12 Aligned_cols=22 Identities=14% Similarity=0.157 Sum_probs=18.1
Q ss_pred CcEEEEEecCHHHHHHHHHhccc
Q 006191 295 LQAAFVSFKSRYGAAIAFHMQQS 317 (657)
Q Consensus 295 ~~~AFVtF~s~~~a~~~~q~~~~ 317 (657)
.+.+||||++.++|..|.+ +..
T Consensus 58 ~d~~fVtF~d~~sAl~AI~-ldG 79 (95)
T 1ufw_A 58 QGQMLVTFADSHSALSVLD-VDG 79 (95)
T ss_dssp TTEEEEECSCSHHHHHHHH-GGG
T ss_pred cCcEEEEEcChHHHHHHHh-cCC
Confidence 3459999999999999998 443
No 213
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.17 E-value=67 Score=26.12 Aligned_cols=45 Identities=11% Similarity=0.065 Sum_probs=34.0
Q ss_pred CCCCcceEEEEeccCCC------CCCchHHHHHHHhhhhCCCcceeeEEEccc
Q 006191 184 KPQPHQFTVLVRSIPVS------AGSTIGDTVENFFKEFHPTTYLSHTVIHQT 230 (657)
Q Consensus 184 ~~~~~~~TVlV~~IP~~------~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~ 230 (657)
...|.+=||+|+-.|.+ .++++...|.+.|+++ |.|..+.++.|.
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~--G~Vilvr~v~d~ 60 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSY--GTIVLVRINQGQ 60 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHH--SCCSEEEEETTE
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHC--CCEEEEEEecCc
Confidence 35788899999998743 3445667788999987 677777777665
No 214
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=27.13 E-value=1.9e+02 Score=24.25 Aligned_cols=49 Identities=16% Similarity=0.085 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChHHHHHHHHHHHHHHHHHHHhhh
Q 006191 232 NLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVDHYGKRLENIEENSRLERSEV 288 (657)
Q Consensus 232 ~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i~~~~~~l~~l~~~I~~~~~~~ 288 (657)
++..|.++-++..+++...... ...+.|.-+++|++.++.+|+..+...
T Consensus 11 Eiq~L~drLD~~~rKlaaa~~r--------gd~~~i~qf~~E~~~l~k~I~~lk~~q 59 (123)
T 2lf0_A 11 EIKRLSDRLDAIRHQQADLSLV--------EAADKYAELEKEKATLEAEIARLREVH 59 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTT--------TCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666554321 123568888999999999999877654
No 215
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=26.87 E-value=1.7e+02 Score=22.39 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhh
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSM 290 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~ 290 (657)
.|+-+++++++.+++|.++|.+.++
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777888888888888776643
No 216
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=26.78 E-value=85 Score=18.29 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 006191 271 GKRLENIEENSRLERSEV 288 (657)
Q Consensus 271 ~~~l~~l~~~I~~~~~~~ 288 (657)
-++++++++.+++.|++.
T Consensus 7 ykeledlqerlrklrkkl 24 (27)
T 3twe_A 7 YKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 367788888888777754
No 217
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=23.28 E-value=40 Score=22.20 Aligned_cols=18 Identities=17% Similarity=0.308 Sum_probs=13.0
Q ss_pred HhhhHHHHHHHHHHHHHH
Q 006191 553 FFLAPLILPFLLIYLCLA 570 (657)
Q Consensus 553 s~i~Pli~~~~~~~f~~~ 570 (657)
+.+.|+++.++.+||.+.
T Consensus 4 ~~~l~~v~~~~ifYFl~i 21 (37)
T 2rdd_B 4 SLILMLVVFGLIFYFMIL 21 (37)
T ss_dssp HHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456688888888887753
No 218
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=22.71 E-value=1.2e+02 Score=25.15 Aligned_cols=42 Identities=7% Similarity=0.148 Sum_probs=0.0
Q ss_pred EEEEeccCCC--CCCchHHHHHHHhhhhCCC-------cceeeEEEcccch
Q 006191 191 TVLVRSIPVS--AGSTIGDTVENFFKEFHPT-------TYLSHTVIHQTSN 232 (657)
Q Consensus 191 TVlV~~IP~~--~~~~~~~~l~~~F~~~~p~-------~v~~v~~~~~~~~ 232 (657)
|+.++|+|.+ ..+++++.+++.|..+.|. +..++.+.++..+
T Consensus 7 tLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~ 57 (104)
T 1wey_A 7 GLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPL 57 (104)
T ss_dssp EEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTT
T ss_pred eEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChH
No 219
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.39 E-value=1e+02 Score=24.81 Aligned_cols=44 Identities=16% Similarity=0.102 Sum_probs=33.0
Q ss_pred CCCcceEEEEeccCCC-----CCCchHHHHHHHhhhhCCCcceeeEEEccc
Q 006191 185 PQPHQFTVLVRSIPVS-----AGSTIGDTVENFFKEFHPTTYLSHTVIHQT 230 (657)
Q Consensus 185 ~~~~~~TVlV~~IP~~-----~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~ 230 (657)
..|.+=||+|+-.|.. .++++...|.+.|+++ |.|..+.++.|.
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~--G~Vi~vr~~~d~ 51 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASF--GEVILIRFVEDK 51 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTT--CCEEEEEECSSS
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhC--CCeEEEEEecCC
Confidence 4577889999998841 2345667889999987 678888877765
No 220
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.52 E-value=1e+02 Score=24.22 Aligned_cols=34 Identities=12% Similarity=0.084 Sum_probs=25.5
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEE
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVI 227 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~ 227 (657)
...+||.|.|+ +.+ .++|+++|+++ |.|.++.+.
T Consensus 13 ~~~~~l~V~n~--~~t---~~~l~~~F~~~--G~i~~v~i~ 46 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMT---PTLLRGAFSPF--GNIIDLSMD 46 (97)
T ss_dssp CCCSEEEEECS--SCC---HHHHHHHHTTT--SCEEEEEEE
T ss_pred CCCCEEEEcCC--CCC---HHHHHHHHhhC--CCEEEEEec
Confidence 45689999995 333 47899999988 567777764
Done!