Query 006194
Match_columns 657
No_of_seqs 353 out of 2630
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 19:44:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006194.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006194hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100 Molecular chaperones G 100.0 3E-139 6E-144 1015.4 65.9 621 28-650 32-655 (663)
2 PTZ00009 heat shock 70 kDa pro 100.0 2E-108 5E-113 919.9 78.6 609 32-640 4-616 (653)
3 PTZ00186 heat shock 70 kDa pre 100.0 2E-104 4E-109 879.4 75.1 609 32-653 27-641 (657)
4 PRK13411 molecular chaperone D 100.0 7E-104 1E-108 882.7 76.9 599 31-642 1-605 (653)
5 PRK13410 molecular chaperone D 100.0 1E-103 3E-108 877.3 74.3 597 31-638 1-607 (668)
6 PTZ00400 DnaK-type molecular c 100.0 5E-103 1E-107 875.7 75.8 598 28-640 37-640 (663)
7 PLN03184 chloroplast Hsp70; Pr 100.0 1E-102 3E-107 872.8 77.1 600 31-645 38-643 (673)
8 PRK00290 dnaK molecular chaper 100.0 2E-101 4E-106 864.9 79.1 594 31-641 1-600 (627)
9 KOG0101 Molecular chaperones H 100.0 8E-104 2E-108 831.7 52.0 608 31-639 6-615 (620)
10 CHL00094 dnaK heat shock prote 100.0 4E-100 9E-105 851.0 76.6 593 31-638 1-599 (621)
11 TIGR02350 prok_dnaK chaperone 100.0 1.6E-99 4E-104 847.3 75.9 588 34-637 2-594 (595)
12 TIGR01991 HscA Fe-S protein as 100.0 2.1E-97 5E-102 823.8 76.0 584 34-639 1-586 (599)
13 PRK05183 hscA chaperone protei 100.0 2.5E-96 5E-101 816.5 74.4 582 33-639 20-602 (616)
14 KOG0102 Molecular chaperones m 100.0 1.2E-98 3E-103 758.2 47.8 605 32-648 27-637 (640)
15 PF00012 HSP70: Hsp70 protein; 100.0 3.8E-94 8.2E-99 813.3 68.9 597 34-638 1-602 (602)
16 PRK01433 hscA chaperone protei 100.0 3.8E-93 8.2E-98 783.3 69.0 553 31-633 18-574 (595)
17 KOG0103 Molecular chaperones H 100.0 8.4E-92 1.8E-96 730.2 52.2 595 34-637 3-645 (727)
18 COG0443 DnaK Molecular chapero 100.0 2.1E-90 4.4E-95 756.9 61.1 572 32-638 5-578 (579)
19 KOG0104 Molecular chaperones G 100.0 4.8E-85 1E-89 680.1 53.2 617 5-640 3-739 (902)
20 PRK11678 putative chaperone; P 100.0 1.8E-54 3.8E-59 460.7 38.3 337 34-407 2-448 (450)
21 PRK13928 rod shape-determining 100.0 5.2E-38 1.1E-42 327.7 33.0 308 34-407 5-324 (336)
22 PRK13929 rod-share determining 100.0 2.3E-37 5E-42 321.5 33.2 306 33-404 5-324 (335)
23 PRK13927 rod shape-determining 100.0 4.9E-35 1.1E-39 305.9 32.7 308 32-406 5-324 (334)
24 TIGR00904 mreB cell shape dete 100.0 9.5E-35 2E-39 303.0 31.4 307 34-406 4-327 (333)
25 PRK13930 rod shape-determining 100.0 1.5E-33 3.4E-38 295.0 32.5 309 33-407 9-329 (335)
26 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 1E-31 2.3E-36 271.9 18.7 306 34-405 3-320 (326)
27 TIGR02529 EutJ ethanolamine ut 100.0 1.4E-29 3.1E-34 249.1 22.7 202 143-402 37-238 (239)
28 COG1077 MreB Actin-like ATPase 100.0 1.3E-28 2.8E-33 238.3 25.4 310 33-408 7-333 (342)
29 PRK15080 ethanolamine utilizat 100.0 9.5E-27 2.1E-31 233.2 28.4 202 145-404 66-267 (267)
30 TIGR01174 ftsA cell division p 99.9 2E-22 4.2E-27 213.4 22.6 195 180-403 157-371 (371)
31 PRK09472 ftsA cell division pr 99.9 2.6E-21 5.6E-26 207.1 27.1 196 183-406 168-388 (420)
32 COG0849 ftsA Cell division ATP 99.8 8.3E-18 1.8E-22 174.8 27.0 198 182-407 166-381 (418)
33 COG4820 EutJ Ethanolamine util 99.7 1.5E-16 3.3E-21 142.8 10.5 197 150-404 76-272 (277)
34 cd00012 ACTIN Actin; An ubiqui 99.7 1.4E-15 3E-20 161.6 15.3 302 35-406 2-347 (371)
35 smart00268 ACTIN Actin. ACTIN 99.6 1.6E-14 3.4E-19 153.7 15.7 299 34-406 3-347 (373)
36 PRK13917 plasmid segregation p 99.6 4.5E-13 9.9E-18 139.4 24.2 209 166-409 109-339 (344)
37 PTZ00280 Actin-related protein 99.5 5E-12 1.1E-16 135.9 21.9 224 144-381 80-336 (414)
38 TIGR01175 pilM type IV pilus a 99.4 7.5E-11 1.6E-15 124.3 24.3 179 180-404 142-347 (348)
39 TIGR03739 PRTRC_D PRTRC system 99.4 2.9E-11 6.3E-16 125.2 19.7 206 166-404 101-318 (320)
40 PF11104 PilM_2: Type IV pilus 99.3 2E-11 4.3E-16 127.7 15.6 203 152-404 91-339 (340)
41 PF00022 Actin: Actin; InterP 99.3 9.4E-12 2E-16 133.5 11.9 310 33-407 5-368 (393)
42 PTZ00452 actin; Provisional 99.3 1.5E-10 3.2E-15 122.4 19.2 301 32-406 5-349 (375)
43 PTZ00004 actin-2; Provisional 99.3 2.1E-10 4.5E-15 121.7 18.6 234 145-405 80-351 (378)
44 PTZ00281 actin; Provisional 99.2 1.6E-10 3.5E-15 122.4 16.9 238 144-406 79-350 (376)
45 PTZ00466 actin-like protein; P 99.2 7.6E-10 1.6E-14 117.1 18.6 238 142-405 83-353 (380)
46 PF06406 StbA: StbA protein; 99.1 2.6E-10 5.6E-15 117.8 9.0 174 196-401 141-316 (318)
47 TIGR00241 CoA_E_activ CoA-subs 99.1 6.8E-09 1.5E-13 103.5 18.7 170 199-403 73-248 (248)
48 KOG0679 Actin-related protein 99.0 1.9E-08 4.2E-13 100.1 17.9 120 142-271 82-202 (426)
49 COG4972 PilM Tfp pilus assembl 99.0 6.4E-08 1.4E-12 95.2 20.3 155 182-381 150-311 (354)
50 TIGR03192 benz_CoA_bzdQ benzoy 98.9 2.2E-07 4.7E-12 92.4 21.0 179 199-406 106-288 (293)
51 TIGR03286 methan_mark_15 putat 98.8 3.2E-07 7E-12 94.7 19.5 178 199-405 220-402 (404)
52 PRK10331 L-fuculokinase; Provi 98.8 5.4E-07 1.2E-11 98.8 21.1 86 321-410 355-440 (470)
53 COG5277 Actin and related prot 98.7 3.3E-07 7.1E-12 97.6 17.1 120 145-271 83-204 (444)
54 TIGR02259 benz_CoA_red_A benzo 98.7 1E-06 2.2E-11 89.8 19.3 178 199-404 249-432 (432)
55 COG1924 Activator of 2-hydroxy 98.7 2.6E-06 5.6E-11 85.8 21.3 178 199-406 211-390 (396)
56 TIGR02261 benz_CoA_red_D benzo 98.7 3.1E-06 6.8E-11 83.0 21.5 178 200-404 80-262 (262)
57 TIGR02628 fuculo_kin_coli L-fu 98.7 6.3E-07 1.4E-11 98.1 18.2 87 320-410 358-444 (465)
58 COG1070 XylB Sugar (pentulose 98.7 2.5E-06 5.3E-11 94.1 22.5 82 323-408 369-450 (502)
59 PRK15027 xylulokinase; Provisi 98.6 2.8E-06 6.1E-11 93.5 21.4 85 322-410 354-438 (484)
60 PRK10719 eutA reactivating fac 98.6 8E-07 1.7E-11 93.0 14.3 83 169-263 90-184 (475)
61 PTZ00294 glycerol kinase-like 98.6 1E-05 2.3E-10 89.5 23.4 82 324-410 375-457 (504)
62 TIGR01314 gntK_FGGY gluconate 98.5 1.4E-05 3E-10 88.6 22.5 52 357-410 401-452 (505)
63 PF07520 SrfB: Virulence facto 98.4 1.9E-05 4.2E-10 89.4 20.8 324 77-408 330-836 (1002)
64 TIGR01311 glycerol_kin glycero 98.4 4.4E-05 9.6E-10 84.3 23.5 84 323-410 367-450 (493)
65 PRK13317 pantothenate kinase; 98.4 3.4E-05 7.4E-10 77.5 20.4 49 357-405 222-273 (277)
66 PRK00047 glpK glycerol kinase; 98.4 3.1E-05 6.7E-10 85.7 22.1 83 323-410 371-454 (498)
67 PRK04123 ribulokinase; Provisi 98.4 6.3E-05 1.4E-09 84.3 24.5 80 323-410 407-490 (548)
68 PLN02295 glycerol kinase 98.4 5.3E-05 1.1E-09 84.1 22.6 83 323-410 375-463 (512)
69 TIGR01234 L-ribulokinase L-rib 98.3 0.00018 3.8E-09 80.4 26.2 84 322-410 403-487 (536)
70 TIGR01312 XylB D-xylulose kina 98.2 0.00014 2.9E-09 80.4 20.5 52 357-410 390-441 (481)
71 PF08841 DDR: Diol dehydratase 98.0 5.5E-05 1.2E-09 73.0 11.2 191 190-404 105-329 (332)
72 COG1069 AraB Ribulose kinase [ 97.9 0.00036 7.9E-09 73.9 16.1 215 184-410 232-482 (544)
73 KOG0676 Actin and related prot 97.8 0.00057 1.2E-08 70.6 15.0 208 148-381 81-314 (372)
74 KOG0677 Actin-related protein 97.4 0.0071 1.5E-07 57.8 15.3 221 168-409 102-364 (389)
75 COG4457 SrfB Uncharacterized p 97.4 0.041 8.8E-07 59.5 22.3 84 319-408 742-848 (1014)
76 PF02782 FGGY_C: FGGY family o 97.2 0.00049 1.1E-08 66.1 5.2 75 330-406 121-196 (198)
77 PF06277 EutA: Ethanolamine ut 97.1 0.0056 1.2E-07 64.7 12.7 87 169-260 87-178 (473)
78 TIGR00555 panK_eukar pantothen 97.1 0.045 9.7E-07 54.8 18.4 47 356-402 229-278 (279)
79 KOG0797 Actin-related protein 97.0 0.0051 1.1E-07 64.3 11.1 121 140-269 195-321 (618)
80 TIGR01315 5C_CHO_kinase FGGY-f 96.9 0.0028 6E-08 70.9 8.2 89 320-410 406-494 (541)
81 PF01869 BcrAD_BadFG: BadF/Bad 96.7 0.25 5.5E-06 49.9 20.6 71 331-404 197-271 (271)
82 KOG0680 Actin-related protein 96.6 0.086 1.9E-06 52.4 15.3 97 168-269 94-198 (400)
83 PLN02669 xylulokinase 96.6 0.0064 1.4E-07 67.9 8.6 77 324-406 416-492 (556)
84 PRK11031 guanosine pentaphosph 96.5 0.14 2.9E-06 56.5 18.0 77 182-264 93-171 (496)
85 PRK03011 butyrate kinase; Prov 96.2 0.057 1.2E-06 56.5 12.1 47 357-403 295-344 (358)
86 TIGR02627 rhamnulo_kin rhamnul 96.0 0.02 4.3E-07 62.6 8.4 84 321-410 353-437 (454)
87 KOG2517 Ribulose kinase and re 96.0 0.024 5.1E-07 61.0 8.4 79 330-410 386-465 (516)
88 PRK10640 rhaB rhamnulokinase; 95.9 0.033 7.1E-07 61.1 9.1 80 325-410 345-425 (471)
89 PRK10939 autoinducer-2 (AI-2) 95.7 0.023 4.9E-07 63.4 7.4 81 325-410 379-460 (520)
90 PF14574 DUF4445: Domain of un 95.7 0.62 1.3E-05 49.5 17.5 86 318-404 289-375 (412)
91 COG0248 GppA Exopolyphosphatas 95.7 0.19 4.1E-06 54.7 14.1 93 146-239 52-148 (492)
92 PRK10854 exopolyphosphatase; P 95.5 0.25 5.5E-06 54.7 14.3 75 183-263 99-175 (513)
93 KOG2531 Sugar (pentulose and h 95.4 0.045 9.7E-07 56.9 7.4 56 349-406 434-489 (545)
94 COG4819 EutA Ethanolamine util 94.9 0.27 5.8E-06 49.2 10.7 87 169-260 89-180 (473)
95 PRK09557 fructokinase; Reviewe 94.9 4.4 9.6E-05 41.5 20.7 38 192-230 95-133 (301)
96 PF13941 MutL: MutL protein 94.9 0.12 2.5E-06 55.5 8.9 33 34-70 2-36 (457)
97 TIGR03706 exo_poly_only exopol 94.9 0.46 1E-05 48.8 13.2 73 185-263 89-163 (300)
98 smart00842 FtsA Cell division 94.8 0.07 1.5E-06 50.6 6.6 30 181-210 157-186 (187)
99 PRK09698 D-allose kinase; Prov 94.8 4.5 9.8E-05 41.5 20.4 38 192-230 103-140 (302)
100 PF14450 FtsA: Cell division p 94.5 0.058 1.3E-06 47.0 4.8 46 222-267 1-51 (120)
101 KOG0681 Actin-related protein 94.5 0.31 6.8E-06 51.9 10.8 122 141-267 90-212 (645)
102 COG3426 Butyrate kinase [Energ 93.9 1.5 3.3E-05 43.1 13.2 48 355-402 294-344 (358)
103 COG0554 GlpK Glycerol kinase [ 93.8 0.2 4.3E-06 53.0 7.6 86 322-409 365-452 (499)
104 COG1548 Predicted transcriptio 92.0 0.82 1.8E-05 44.3 8.3 72 152-238 76-148 (330)
105 TIGR00744 ROK_glcA_fam ROK fam 91.8 10 0.00022 39.2 17.4 93 143-237 32-140 (318)
106 PF07318 DUF1464: Protein of u 91.8 2.7 6E-05 43.1 12.4 54 356-410 259-319 (343)
107 PRK09585 anmK anhydro-N-acetyl 90.7 1.8 3.9E-05 45.3 10.1 72 332-407 264-339 (365)
108 PTZ00340 O-sialoglycoprotein e 90.4 25 0.00054 36.7 18.2 184 166-381 70-287 (345)
109 PRK14878 UGMP family protein; 90.3 9.3 0.0002 39.6 15.2 24 358-381 242-265 (323)
110 KOG0681 Actin-related protein 90.1 0.32 7E-06 51.8 4.1 49 358-406 559-614 (645)
111 PTZ00297 pantothenate kinase; 89.6 39 0.00085 42.4 21.8 50 355-404 1389-1444(1452)
112 PRK14101 bifunctional glucokin 89.1 8.6 0.00019 44.1 15.1 75 331-406 243-330 (638)
113 PTZ00288 glucokinase 1; Provis 88.9 36 0.00078 36.4 18.7 20 32-51 26-45 (405)
114 PF03702 UPF0075: Uncharacteri 88.0 1.4 3E-05 46.2 7.1 75 330-407 260-338 (364)
115 PF02541 Ppx-GppA: Ppx/GppA ph 87.8 0.92 2E-05 46.2 5.6 73 186-264 77-151 (285)
116 PRK13310 N-acetyl-D-glucosamin 87.5 36 0.00078 34.8 23.8 69 335-404 224-300 (303)
117 PRK09605 bifunctional UGMP fam 86.2 62 0.0014 36.2 25.2 52 358-409 246-302 (535)
118 PLN02666 5-oxoprolinase 85.1 10 0.00022 46.5 13.1 78 324-404 454-532 (1275)
119 TIGR03281 methan_mark_12 putat 84.4 5.5 0.00012 40.0 8.6 50 358-410 263-315 (326)
120 PF01968 Hydantoinase_A: Hydan 84.4 0.87 1.9E-05 46.4 3.3 68 333-403 217-284 (290)
121 PLN02920 pantothenate kinase 1 84.0 6 0.00013 41.5 9.1 49 356-404 296-350 (398)
122 COG2192 Predicted carbamoyl tr 83.5 75 0.0016 34.9 22.6 83 322-409 254-338 (555)
123 PF02543 CmcH_NodU: Carbamoylt 83.5 64 0.0014 34.0 18.3 83 322-409 131-216 (360)
124 KOG1385 Nucleoside phosphatase 82.8 3.1 6.7E-05 43.4 6.4 160 27-238 62-231 (453)
125 PRK00292 glk glucokinase; Prov 82.1 4.5 9.8E-05 41.8 7.7 42 191-232 88-140 (316)
126 COG2377 Predicted molecular ch 81.6 12 0.00025 38.8 9.9 53 355-407 288-344 (371)
127 PF00370 FGGY_N: FGGY family o 79.7 1.7 3.6E-05 43.1 3.3 19 33-51 1-19 (245)
128 PRK00976 hypothetical protein; 78.0 17 0.00036 37.4 9.8 51 357-410 263-315 (326)
129 COG1940 NagC Transcriptional r 77.8 18 0.0004 37.2 10.5 38 192-230 105-143 (314)
130 KOG2708 Predicted metalloprote 77.5 20 0.00044 34.3 9.4 65 332-402 234-300 (336)
131 PTZ00107 hexokinase; Provision 77.2 42 0.00091 36.6 13.2 62 175-236 189-253 (464)
132 COG5026 Hexokinase [Carbohydra 75.8 19 0.00041 38.1 9.5 25 32-56 75-102 (466)
133 PRK10939 autoinducer-2 (AI-2) 75.6 2.2 4.9E-05 47.5 3.2 21 31-51 2-22 (520)
134 COG0145 HyuA N-methylhydantoin 74.9 3.4 7.3E-05 47.0 4.3 41 198-238 256-296 (674)
135 TIGR03722 arch_KAE1 universal 74.9 1.1E+02 0.0024 31.7 17.0 42 358-399 243-289 (322)
136 PF08735 DUF1786: Putative pyr 74.4 24 0.00053 34.7 9.5 71 164-237 111-184 (254)
137 PLN02362 hexokinase 74.0 18 0.0004 39.7 9.5 54 179-235 204-259 (509)
138 PLN02405 hexokinase 73.8 17 0.00036 39.9 9.1 57 179-238 204-262 (497)
139 smart00732 YqgFc Likely ribonu 73.5 3 6.5E-05 34.5 2.7 18 33-50 2-19 (99)
140 TIGR00329 gcp_kae1 metallohydr 73.0 49 0.0011 34.0 12.0 36 341-381 247-282 (305)
141 TIGR03723 bact_gcp putative gl 71.9 1.3E+02 0.0027 31.1 20.9 46 357-402 259-309 (314)
142 PRK07058 acetate kinase; Provi 70.6 24 0.00051 37.3 9.0 44 334-381 299-343 (396)
143 TIGR00143 hypF [NiFe] hydrogen 69.3 9.6 0.00021 43.9 6.3 49 357-405 658-711 (711)
144 PF15290 Syntaphilin: Golgi-lo 68.8 12 0.00027 36.7 6.0 24 559-582 84-108 (305)
145 PRK09604 UGMP family protein; 68.4 1.5E+02 0.0033 30.7 18.7 52 357-408 254-310 (332)
146 KOG2008 BTK-associated SH3-dom 68.1 78 0.0017 31.7 11.2 97 554-652 145-247 (426)
147 TIGR02627 rhamnulo_kin rhamnul 67.9 6.4 0.00014 43.0 4.5 16 35-50 1-16 (454)
148 PF03652 UPF0081: Uncharacteri 67.5 6.1 0.00013 35.1 3.4 21 33-53 2-22 (135)
149 cd06007 R3H_DEXH_helicase R3H 67.1 20 0.00043 26.7 5.5 30 169-198 16-45 (59)
150 PF14450 FtsA: Cell division p 67.1 9.6 0.00021 33.0 4.6 21 34-54 1-21 (120)
151 PLN02596 hexokinase-like 65.2 1.1E+02 0.0024 33.6 13.1 58 179-239 204-263 (490)
152 PRK00180 acetate kinase A/prop 65.1 97 0.0021 33.1 12.3 44 335-381 304-348 (402)
153 PF00349 Hexokinase_1: Hexokin 64.7 25 0.00053 33.8 7.2 29 218-246 61-90 (206)
154 PLN02914 hexokinase 63.6 1.7E+02 0.0037 32.2 14.1 62 175-239 200-263 (490)
155 TIGR00016 ackA acetate kinase. 63.0 1.2E+02 0.0026 32.3 12.4 43 336-381 309-352 (404)
156 COG2971 Predicted N-acetylgluc 60.9 2E+02 0.0042 29.3 23.0 65 335-407 227-292 (301)
157 COG0533 QRI7 Metal-dependent p 59.9 2.2E+02 0.0047 29.5 16.7 211 142-381 41-285 (342)
158 PRK00109 Holliday junction res 59.7 9.8 0.00021 33.9 3.3 21 32-52 4-24 (138)
159 COG2441 Predicted butyrate kin 59.3 53 0.0011 32.6 8.2 55 356-410 272-336 (374)
160 PRK13311 N-acetyl-D-glucosamin 57.8 1.4E+02 0.0029 29.7 11.6 38 192-230 95-133 (256)
161 COG4012 Uncharacterized protei 57.0 35 0.00075 33.6 6.5 66 198-267 207-272 (342)
162 PRK12440 acetate kinase; Revie 56.0 1.6E+02 0.0035 31.3 11.9 42 336-381 303-345 (397)
163 COG0816 Predicted endonuclease 55.9 12 0.00026 33.4 3.1 21 32-52 2-22 (141)
164 cd02640 R3H_NRF R3H domain of 55.5 57 0.0012 24.3 6.2 31 168-198 16-46 (60)
165 KOG0678 Actin-related protein 55.4 2.4E+02 0.0051 29.0 12.2 96 169-268 108-207 (415)
166 TIGR03123 one_C_unchar_1 proba 54.4 9 0.0002 39.3 2.4 32 204-239 116-147 (318)
167 TIGR01315 5C_CHO_kinase FGGY-f 54.1 10 0.00023 42.4 3.1 20 34-53 2-22 (541)
168 KOG1369 Hexokinase [Carbohydra 53.1 33 0.00072 37.1 6.5 64 175-241 186-252 (474)
169 cd00529 RuvC_resolvase Hollida 53.0 20 0.00043 32.7 4.2 24 34-57 2-27 (154)
170 PRK00039 ruvC Holliday junctio 52.5 13 0.00028 34.3 2.9 19 32-50 2-20 (164)
171 PRK00736 hypothetical protein; 51.9 77 0.0017 24.3 6.6 27 617-643 30-56 (68)
172 PRK12408 glucokinase; Provisio 51.4 10 0.00023 39.5 2.4 26 26-51 10-35 (336)
173 KOG0103 Molecular chaperones H 51.1 42 0.00092 37.6 6.9 62 565-635 653-725 (727)
174 PRK13320 pantothenate kinase; 50.3 19 0.00042 35.6 4.0 22 32-53 2-23 (244)
175 PF00349 Hexokinase_1: Hexokin 49.4 17 0.00037 34.9 3.3 35 179-213 167-204 (206)
176 PRK13318 pantothenate kinase; 47.9 20 0.00042 35.9 3.7 20 34-53 2-21 (258)
177 PRK13321 pantothenate kinase; 47.4 20 0.00043 35.8 3.6 20 34-53 2-21 (256)
178 PF14574 DUF4445: Domain of un 46.6 95 0.0021 33.3 8.6 48 329-376 55-102 (412)
179 PLN02902 pantothenate kinase 46.1 92 0.002 36.4 8.8 51 356-406 345-401 (876)
180 PF08006 DUF1700: Protein of u 45.8 65 0.0014 30.1 6.7 55 571-633 5-61 (181)
181 COG4296 Uncharacterized protei 45.5 63 0.0014 28.1 5.6 21 603-623 91-112 (156)
182 PLN02669 xylulokinase 44.9 20 0.00042 40.4 3.4 19 32-50 8-26 (556)
183 PRK09343 prefoldin subunit bet 43.5 2.2E+02 0.0047 24.7 11.4 56 587-646 63-118 (121)
184 PRK13326 pantothenate kinase; 43.5 27 0.00059 34.9 3.9 22 32-53 6-27 (262)
185 PF05957 DUF883: Bacterial pro 43.3 1.8E+02 0.0039 23.7 8.2 66 540-610 5-72 (94)
186 cd02641 R3H_Smubp-2_like R3H d 43.1 1E+02 0.0023 22.9 6.0 30 169-198 17-46 (60)
187 PRK05082 N-acetylmannosamine k 42.5 78 0.0017 32.1 7.2 70 335-405 212-287 (291)
188 PRK00295 hypothetical protein; 42.2 1.3E+02 0.0029 23.0 6.6 24 619-642 32-55 (68)
189 PF02075 RuvC: Crossover junct 41.9 43 0.00093 30.3 4.6 25 34-58 1-27 (149)
190 cd02639 R3H_RRM R3H domain of 41.3 55 0.0012 24.5 4.2 30 169-198 17-46 (60)
191 PRK13331 pantothenate kinase; 41.1 35 0.00077 33.8 4.2 21 33-53 8-28 (251)
192 cd02646 R3H_G-patch R3H domain 40.1 82 0.0018 23.2 5.0 40 155-197 4-43 (58)
193 PRK07157 acetate kinase; Provi 39.3 2.6E+02 0.0056 29.8 10.3 43 336-381 302-345 (400)
194 COG5026 Hexokinase [Carbohydra 39.2 1.2E+02 0.0026 32.3 7.8 30 218-247 73-103 (466)
195 PF10458 Val_tRNA-synt_C: Valy 37.2 1.2E+02 0.0027 22.9 5.8 42 564-605 11-53 (66)
196 smart00787 Spc7 Spc7 kinetocho 36.9 2.5E+02 0.0055 28.9 9.7 84 536-628 200-286 (312)
197 PRK04406 hypothetical protein; 36.6 1.8E+02 0.0039 22.8 6.6 24 619-642 38-61 (75)
198 PF02685 Glucokinase: Glucokin 35.6 2.4E+02 0.0053 29.1 9.5 198 191-405 88-314 (316)
199 TIGR02707 butyr_kinase butyrat 35.1 53 0.0012 34.4 4.6 46 357-402 293-341 (351)
200 COG1382 GimC Prefoldin, chaper 34.9 3E+02 0.0065 23.8 11.5 52 592-647 67-118 (119)
201 PRK02119 hypothetical protein; 34.8 2E+02 0.0044 22.4 6.6 24 619-642 36-59 (73)
202 PF07865 DUF1652: Protein of u 34.5 1.5E+02 0.0033 22.9 5.7 49 501-550 15-65 (69)
203 PRK10972 Z-ring-associated pro 34.5 2.9E+02 0.0063 23.5 8.6 63 567-635 32-96 (109)
204 PRK12379 propionate/acetate ki 33.5 2.3E+02 0.005 30.2 8.9 42 336-381 300-342 (396)
205 TIGR00250 RNAse_H_YqgF RNAse H 32.5 28 0.0006 30.7 1.7 17 35-51 1-17 (130)
206 TIGR03545 conserved hypothetic 32.4 3.9E+02 0.0084 30.0 10.9 102 538-642 162-273 (555)
207 PLN02377 3-ketoacyl-CoA syntha 32.1 1.2E+02 0.0025 33.6 6.7 55 328-382 164-219 (502)
208 COG2069 CdhD CO dehydrogenase/ 31.7 84 0.0018 31.4 4.9 66 168-234 251-327 (403)
209 PF03646 FlaG: FlaG protein; 31.7 1.1E+02 0.0023 25.8 5.2 45 500-552 54-99 (107)
210 PF00480 ROK: ROK family; Int 31.2 2.8E+02 0.006 25.4 8.5 82 142-230 30-128 (179)
211 PRK02793 phi X174 lysis protei 31.0 2.5E+02 0.0055 21.8 6.7 25 619-643 35-59 (72)
212 KOG2517 Ribulose kinase and re 30.9 62 0.0013 35.5 4.3 19 32-50 6-24 (516)
213 PF11593 Med3: Mediator comple 30.8 62 0.0013 33.5 4.0 41 599-640 9-49 (379)
214 cd00529 RuvC_resolvase Hollida 30.7 4E+02 0.0088 24.0 10.3 30 221-250 1-30 (154)
215 KOG2707 Predicted metalloprote 30.6 6.4E+02 0.014 26.3 18.9 221 148-381 82-329 (405)
216 PF00871 Acetate_kinase: Aceto 29.5 4.7E+02 0.01 27.9 10.6 43 336-381 302-345 (388)
217 PF05276 SH3BP5: SH3 domain-bi 29.1 5.7E+02 0.012 25.2 11.2 41 596-640 189-229 (239)
218 COG5185 HEC1 Protein involved 29.0 4.6E+02 0.01 28.3 9.9 30 553-582 298-327 (622)
219 PRK00488 pheS phenylalanyl-tRN 28.7 5.3E+02 0.011 26.9 10.4 36 587-629 48-83 (339)
220 TIGR02231 conserved hypothetic 28.7 8.5E+02 0.018 27.1 17.2 100 537-640 68-172 (525)
221 PTZ00107 hexokinase; Provision 28.6 1.5E+02 0.0032 32.5 6.7 25 218-242 72-96 (464)
222 COG0554 GlpK Glycerol kinase [ 28.4 41 0.0009 36.2 2.4 23 31-53 4-27 (499)
223 TIGR00671 baf pantothenate kin 28.2 59 0.0013 32.1 3.4 45 326-370 175-219 (243)
224 PF03309 Pan_kinase: Type III 27.3 74 0.0016 30.5 3.9 21 34-54 1-21 (206)
225 PRK11199 tyrA bifunctional cho 26.8 6.3E+02 0.014 26.7 11.1 96 258-379 13-120 (374)
226 PRK12397 propionate kinase; Re 26.8 7.5E+02 0.016 26.5 11.3 42 336-381 304-346 (404)
227 KOG4001 Axonemal dynein light 26.7 4.7E+02 0.01 24.7 8.5 49 559-609 194-242 (259)
228 PRK00846 hypothetical protein; 26.7 3.2E+02 0.007 21.6 6.5 27 617-643 38-64 (77)
229 PRK13324 pantothenate kinase; 26.6 70 0.0015 31.9 3.6 20 34-53 2-21 (258)
230 PLN03173 chalcone synthase; Pr 26.5 2.3E+02 0.005 30.3 7.7 48 335-382 101-149 (391)
231 COG3894 Uncharacterized metal- 26.4 1.8E+02 0.0039 31.6 6.6 43 223-265 167-210 (614)
232 PRK04325 hypothetical protein; 25.6 3.3E+02 0.0071 21.3 6.5 25 619-643 36-60 (74)
233 PF04848 Pox_A22: Poxvirus A22 25.5 1.1E+02 0.0025 27.3 4.3 18 33-50 2-19 (143)
234 KOG0797 Actin-related protein 25.3 27 0.00057 37.7 0.4 52 357-408 526-591 (618)
235 PF03904 DUF334: Domain of unk 25.3 6.3E+02 0.014 24.5 11.9 37 536-572 39-83 (230)
236 COG1521 Pantothenate kinase ty 24.9 75 0.0016 31.5 3.4 44 326-369 181-224 (251)
237 TIGR01319 glmL_fam conserved h 24.4 44 0.00096 36.0 1.8 18 221-238 250-267 (463)
238 PLN03170 chalcone synthase; Pr 24.4 2.3E+02 0.005 30.3 7.3 51 332-382 102-153 (401)
239 PLN00130 succinate dehydrogena 24.3 17 0.00037 33.2 -1.1 20 32-51 57-76 (213)
240 PF02801 Ketoacyl-synt_C: Beta 24.2 88 0.0019 26.8 3.4 46 338-383 25-72 (119)
241 PLN03172 chalcone synthase fam 23.8 2.7E+02 0.0058 29.8 7.6 52 331-382 97-149 (393)
242 PRK11637 AmiB activator; Provi 23.2 6.2E+02 0.014 27.3 10.5 25 615-639 112-136 (428)
243 PF04102 SlyX: SlyX; InterPro 23.0 1.4E+02 0.003 22.9 3.9 25 616-640 28-52 (69)
244 PRK10404 hypothetical protein; 22.9 4.5E+02 0.0098 22.0 8.5 66 540-610 12-79 (101)
245 PF07066 DUF3882: Lactococcus 22.5 1.1E+02 0.0023 27.3 3.4 24 31-54 1-29 (159)
246 PLN02914 hexokinase 22.4 2.3E+02 0.0049 31.3 6.7 25 218-242 93-117 (490)
247 COG1940 NagC Transcriptional r 22.4 3E+02 0.0064 28.1 7.5 51 219-269 5-55 (314)
248 PLN02939 transferase, transfer 22.3 5.6E+02 0.012 30.8 10.2 101 539-639 239-343 (977)
249 COG3513 Predicted CRISPR-assoc 22.2 75 0.0016 36.4 3.0 24 29-52 1-24 (1088)
250 PRK15080 ethanolamine utilizat 22.0 3.4E+02 0.0075 27.1 7.7 46 218-263 22-67 (267)
251 TIGR01865 cas_Csn1 CRISPR-asso 22.0 69 0.0015 37.7 3.0 20 33-52 2-21 (805)
252 KOG3133 40 kDa farnesylated pr 21.8 4.5E+02 0.0097 26.1 7.8 62 566-633 141-202 (267)
253 PF11458 Mistic: Membrane-inte 21.6 69 0.0015 24.7 1.8 18 588-605 3-20 (84)
254 PF08392 FAE1_CUT1_RppA: FAE1/ 21.5 2.1E+02 0.0046 28.9 5.8 43 339-381 86-129 (290)
255 PF03630 Fumble: Fumble ; Int 21.3 1.9E+02 0.0042 30.2 5.7 49 356-404 286-340 (341)
256 COG2433 Uncharacterized conser 21.3 6.4E+02 0.014 28.3 9.6 64 557-628 447-510 (652)
257 PF01548 DEDD_Tnp_IS110: Trans 20.8 1.4E+02 0.0031 26.3 4.2 20 34-53 1-20 (144)
258 PLN03168 chalcone synthase; Pr 20.8 2.7E+02 0.0059 29.6 7.0 54 329-382 94-148 (389)
259 PF13941 MutL: MutL protein 20.7 2.5E+02 0.0053 30.6 6.5 46 222-267 2-48 (457)
260 smart00732 YqgFc Likely ribonu 20.5 2.3E+02 0.0049 22.9 5.1 24 221-244 2-25 (99)
261 PRK08868 flagellar protein Fla 20.5 3.1E+02 0.0067 24.6 5.9 44 501-552 89-133 (144)
262 PLN02854 3-ketoacyl-CoA syntha 20.4 2.5E+02 0.0054 31.2 6.6 53 330-382 182-235 (521)
No 1
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-139 Score=1015.36 Aligned_cols=621 Identities=77% Similarity=1.162 Sum_probs=607.5
Q ss_pred CCCCCeEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEEcCCceeEcHHHHHHHhhcccchhhHhHHhhCCCCC
Q 006194 28 ATKLGTVIGIDLGTTYSCVGVYRNGRVEIIANDQGNRITPSWVAFTDTERLIGEAAKNQAALNAERTVFDVKRLIGRKFD 107 (657)
Q Consensus 28 ~~~~~~viGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~ 107 (657)
.++++.+||||||||||||+++++|.+++|.|++|+|.+||+|+|.+++|++|+.|+++...||++++++.||++|+.++
T Consensus 32 ~~~~gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~ 111 (663)
T KOG0100|consen 32 AEKLGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFN 111 (663)
T ss_pred hhccceEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccceechHHHhCcccC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhhhccCCeEEeecCCceeEEEEEc-CceeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHH
Q 006194 108 DPEVQRDIKFLPYKIVNKGGKPYIQVKVK-GETKVFSPEEISAMILQKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQAT 186 (657)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l 186 (657)
++.++++++++||++++.+++++++|.+. |+.+.|+|+++++|+|.++++.|+.|+|..+.++|+|||+||++.||+++
T Consensus 112 d~~vq~Dik~~Pfkvv~k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQAT 191 (663)
T KOG0100|consen 112 DKSVQKDIKFLPFKVVNKDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQAT 191 (663)
T ss_pred ChhhhhhhhcCceEEEcCCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhh
Confidence 99999999999999999999999999997 66899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHH
Q 006194 187 KDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMD 266 (657)
Q Consensus 187 ~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 266 (657)
++|..+|||+++++|+||+|||++||++....++++||||+||||||||++.+.+|+|+|+++.||.++||.+||+++++
T Consensus 192 KDAGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm~ 271 (663)
T KOG0100|consen 192 KDAGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVME 271 (663)
T ss_pred cccceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHHH
Confidence 99999999999999999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHccCCceeEEEEeeccCCceeEEEecHHHHHHHHHHHHHHHHHHHHH
Q 006194 267 YFIKLIKKKYNKDISKDNKAIGKLRRECERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNMDLFKKTMGPVKK 346 (657)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~l~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~ 346 (657)
||.+.++++++.+++.+.+++.+|+++||++|+.||+..++.+.|+++++|.|++-++||+.||++-.++|...+.++++
T Consensus 272 ~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~k 351 (663)
T KOG0100|consen 272 YFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQK 351 (663)
T ss_pred HHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHHHhhhcCCCCCCCcceEEEeeccc
Q 006194 347 ALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQGGILSGEGGDETKGILLLDVAPL 426 (657)
Q Consensus 347 ~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~a~~~~~~~~~~~~~~~~~d~~~~ 426 (657)
+|+++++...+|+.|+||||++|||.||++|+++|+|+++++.+||+||||+|||.+|..+||. ....++++.|++|.
T Consensus 352 vl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGe--e~t~divLLDv~pL 429 (663)
T KOG0100|consen 352 VLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGE--EDTGDIVLLDVNPL 429 (663)
T ss_pred HHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccc--cCcCcEEEEeeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998 45889999999999
Q ss_pred ceeEEeeCCEEEEEEecCCCCCcceeeeeeeccCCCceeEEEEEecCCcccccCcceeeEEecCCCCCCCCCCeeEEEEE
Q 006194 427 SLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQSTVTIKVYEGERSLTKDCRELGRFDLSGIPPAPRGVPQIEVTFE 506 (657)
Q Consensus 427 ~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~v~~g~~~~~~~~~~lg~~~l~~~~~~~~~~~~i~v~~~ 506 (657)
++||++.+|.|..+||||+.||+++++.|++..|+|+++.|+||+|++++..+|+.||.|.++||||+|+|.|+|+|+|+
T Consensus 430 tlGIETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIEVtFe 509 (663)
T KOG0100|consen 430 TLGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTFE 509 (663)
T ss_pred cceeeeecceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCccEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCcEEEEEEecCCcceeEEEEeccCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHhhh--h
Q 006194 507 VDANGILHVTAEDKGAKNKQSITIINDKGRLSQEEIDRMVKEAEEFAEEDKKVRERVDSRNKLETYIYNMRSTINDK--L 584 (657)
Q Consensus 507 ~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LE~~iy~~r~~l~~~--~ 584 (657)
+|.||+|+|++.|+++|++..++|+++..+||+|+|++|++++++|...|+..+++.++||+||+|.|.+++.+.+. +
T Consensus 510 vDangiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkekL 589 (663)
T KOG0100|consen 510 VDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEKL 589 (663)
T ss_pred EccCceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999765 8
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 006194 585 ADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVIKQVYEKNGGSSSADSED 650 (657)
Q Consensus 585 ~~~~~~~e~~~i~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e~~~~~~~~~~~~ 650 (657)
...+++++++.+..+++++.+||++|.++++++|++++++|+.+++||..+.|+.+||++.++++.
T Consensus 590 g~Kl~~edKe~~e~av~e~~eWL~~n~~a~~Ee~~ek~kele~vv~PiisklY~~ag~~~~~~~~e 655 (663)
T KOG0100|consen 590 GGKLSDEDKETIEDAVEEALEWLESNQDASKEEFKEKKKELEAVVQPIISKLYGGAGGAPEPAGEE 655 (663)
T ss_pred cccCChhHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Confidence 899999999999999999999999999999999999999999999999999999988887777443
No 2
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=2.4e-108 Score=919.89 Aligned_cols=609 Identities=65% Similarity=1.046 Sum_probs=579.5
Q ss_pred CeEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEEcCCceeEcHHHHHHHhhcccchhhHhHHhhCCCCCCHHH
Q 006194 32 GTVIGIDLGTTYSCVGVYRNGRVEIIANDQGNRITPSWVAFTDTERLIGEAAKNQAALNAERTVFDVKRLIGRKFDDPEV 111 (657)
Q Consensus 32 ~~viGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~~ 111 (657)
+.+||||||||||+||++++|.++++.|..|+|.+||+|+|.++.+++|+.|..+...+|.++++++||+||+.++++.+
T Consensus 4 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 83 (653)
T PTZ00009 4 GPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSVV 83 (653)
T ss_pred ccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchhH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCeEEee-cCCceeEEEEEcCceeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 006194 112 QRDIKFLPYKIVN-KGGKPYIQVKVKGETKVFSPEEISAMILQKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKDAG 190 (657)
Q Consensus 112 ~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa 190 (657)
+...+.+||.+.. .++...+.+.+.+....++|+++++++|++|++.|+.+++..+.++|||||+||++.||+++++||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa 163 (653)
T PTZ00009 84 QSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAG 163 (653)
T ss_pred hhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHHHH
Confidence 9999999999876 677788888888877899999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeecchhHHHHHHhccccCC-CcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHHH
Q 006194 191 IIAGLNVARIINEPTAAAIAYGLDKKG-GEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFI 269 (657)
Q Consensus 191 ~~AGl~~~~li~Ep~Aaal~y~~~~~~-~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~ 269 (657)
++|||+++++++||+|||++|+..... .+.+++|||+||||+|+|++++.++.++++++.|+..+||.+||..|++|+.
T Consensus 164 ~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~~~~ 243 (653)
T PTZ00009 164 TIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCV 243 (653)
T ss_pred HHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHHHHH
Confidence 999999999999999999999987543 4678999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc-CCCCCCCHHHHHHHHHHHHHHHHHccCCceeEEEEeeccCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHH
Q 006194 270 KLIKKKY-NKDISKDNKAIGKLRRECERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNMDLFKKTMGPVKKAL 348 (657)
Q Consensus 270 ~~~~~~~-~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~l~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l 348 (657)
++|++++ +.++..+++++.+|+.+||++|+.||.+.++.+.++.++++.++.++|||++|+++|+|+++++..+|+++|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L 323 (653)
T PTZ00009 244 QDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVEKVL 323 (653)
T ss_pred HHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998877 467778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHHHhhhcCCCCCCCcceEEEeecccce
Q 006194 349 EDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQGGILSGEGGDETKGILLLDVAPLSL 428 (657)
Q Consensus 349 ~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~a~~~~~~~~~~~~~~~~~d~~~~~~ 428 (657)
+.++++..+|+.|+||||+||+|+|++.|++.|++..+...+||++|||+|||++|+.+++...++++++.+.|++|++|
T Consensus 324 ~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~dv~p~sl 403 (653)
T PTZ00009 324 KDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSL 403 (653)
T ss_pred HHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEEeeccccc
Confidence 99999999999999999999999999999999976788889999999999999999999986556688999999999999
Q ss_pred eEEeeCCEEEEEEecCCCCCcceeeeeeeccCCCceeEEEEEecCCcccccCcceeeEEecCCCCCCCCCCeeEEEEEEc
Q 006194 429 GIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQSTVTIKVYEGERSLTKDCRELGRFDLSGIPPAPRGVPQIEVTFEVD 508 (657)
Q Consensus 429 gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~v~~g~~~~~~~~~~lg~~~l~~~~~~~~~~~~i~v~~~~d 508 (657)
|++..++.+.++|++|+++|++++++|++..|+|+.+.|.||||++..+.+|..||+|.+.++|+.++|.++|+|+|++|
T Consensus 404 gi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id 483 (653)
T PTZ00009 404 GLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVTFDID 483 (653)
T ss_pred CccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCCCCCCceEEEEEEEC
Confidence 99999999999999999999999999999999999999999999999989999999999999999999988999999999
Q ss_pred CCCcEEEEEEecCCcceeEEEEeccCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHhhh-hhcC
Q 006194 509 ANGILHVTAEDKGAKNKQSITIINDKGRLSQEEIDRMVKEAEEFAEEDKKVRERVDSRNKLETYIYNMRSTINDK-LADK 587 (657)
Q Consensus 509 ~~g~l~v~~~~~~~~~~~~~~i~~~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LE~~iy~~r~~l~~~-~~~~ 587 (657)
.||+|+|++.+..+|+...++|.....+|++++++++++++.++...|+..+++.+++|+||+|||++|++|+++ +.++
T Consensus 484 ~~Gil~v~~~~~~t~~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~~~~~~~~ 563 (653)
T PTZ00009 484 ANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQDEKVKGK 563 (653)
T ss_pred CCCeEEEEEecccCCceeeEEEeeccccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhcc
Confidence 999999999999999999999887667899999999999999999999999999999999999999999999754 8999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006194 588 IDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVIKQVYEKN 640 (657)
Q Consensus 588 ~~~~e~~~i~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e~~ 640 (657)
+++++++++.+.++++++|||++++++.++|++++++|+++++|+..|++.++
T Consensus 564 ~t~ee~~~l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~~~~pi~~r~~~~~ 616 (653)
T PTZ00009 564 LSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVESVCNPIMTKMYQAA 616 (653)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999988888999999999999999999999998764
No 3
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=1.9e-104 Score=879.40 Aligned_cols=609 Identities=49% Similarity=0.815 Sum_probs=566.8
Q ss_pred CeEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEEcCCceeEcHHHHHHHhhcccchhhHhHHhhCCCCCCHHH
Q 006194 32 GTVIGIDLGTTYSCVGVYRNGRVEIIANDQGNRITPSWVAFTDTERLIGEAAKNQAALNAERTVFDVKRLIGRKFDDPEV 111 (657)
Q Consensus 32 ~~viGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~~ 111 (657)
+.+||||||||||+||++++|.+.++.|..|.+.+||+|+|.++.+++|..|+.+...+|.++++.+||+||++++++.+
T Consensus 27 ~~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~v 106 (657)
T PTZ00186 27 GDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEHI 106 (657)
T ss_pred ceEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCeEEee-cCCceeEEEEEcCceeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 006194 112 QRDIKFLPYKIVN-KGGKPYIQVKVKGETKVFSPEEISAMILQKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKDAG 190 (657)
Q Consensus 112 ~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa 190 (657)
+...+.+||.++. .++...+.. .++ ..++|+++++++|+++++.|+.++|.++.++|||||+||++.||+++++||
T Consensus 107 ~~~~~~~p~~vv~~~~~~~~i~~-~~~--~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa 183 (657)
T PTZ00186 107 QKDIKNVPYKIVRAGNGDAWVQD-GNG--KQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAG 183 (657)
T ss_pred HHhhccCcEEEEEcCCCceEEEe-CCC--eEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHH
Confidence 9999999999986 455444432 233 789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHHHH
Q 006194 191 IIAGLNVARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFIK 270 (657)
Q Consensus 191 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~ 270 (657)
++|||+++++++||+|||++|+..... +.+++|||+||||||+|++++.++.++++++.|+.++||.+||.+|++|+.+
T Consensus 184 ~~AGl~v~rlInEPtAAAlayg~~~~~-~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~~~ 262 (657)
T PTZ00186 184 TIAGLNVIRVVNEPTAAALAYGMDKTK-DSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILE 262 (657)
T ss_pred HHcCCCeEEEEcChHHHHHHHhccCCC-CCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHHHHH
Confidence 999999999999999999999987653 6799999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHHHHHHHHccCCceeEEEEeeccCC----ceeEEEecHHHHHHHHHHHHHHHHHHHHH
Q 006194 271 LIKKKYNKDISKDNKAIGKLRRECERAKRALSSQHQVRVEIESLFDG----VDFSEPLTRARFEELNMDLFKKTMGPVKK 346 (657)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~l~~~----~~~~~~itr~~fe~~~~~~~~~~~~~i~~ 346 (657)
+|+.+++.++..+++.+.+|+.+||++|+.||....+.+.++.+..+ .++.+.|||++|+++|+|+++++..++.+
T Consensus 263 ~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~v~~ 342 (657)
T PTZ00186 263 EFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQ 342 (657)
T ss_pred HHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888899999999999999999999999999998876532 45889999999999999999999999999
Q ss_pred HHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHHHhhhcCCCCCCCcceEEEeeccc
Q 006194 347 ALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQGGILSGEGGDETKGILLLDVAPL 426 (657)
Q Consensus 347 ~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~a~~~~~~~~~~~~~~~~~d~~~~ 426 (657)
+|+.+++++.+|+.|+||||+||+|.|++.|+++| +.++...+||++|||+|||++|+.+++. ++++.+.|++|+
T Consensus 343 ~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~f-g~~~~~~~nPdeaVA~GAAi~a~~l~~~----~~~~~l~Dv~p~ 417 (657)
T PTZ00186 343 CMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFF-QKDPFRGVNPDEAVALGAATLGGVLRGD----VKGLVLLDVTPL 417 (657)
T ss_pred HHHHcCCChhhCCEEEEECCcccChHHHHHHHHHh-CCCccccCCCchHHHHhHHHHHHHhccc----cCceEEEeeccc
Confidence 99999999999999999999999999999999999 5667788999999999999999999875 678999999999
Q ss_pred ceeEEeeCCEEEEEEecCCCCCcceeeeeeeccCCCceeEEEEEecCCcccccCcceeeEEecCCCCCCCCCCeeEEEEE
Q 006194 427 SLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQSTVTIKVYEGERSLTKDCRELGRFDLSGIPPAPRGVPQIEVTFE 506 (657)
Q Consensus 427 ~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~v~~g~~~~~~~~~~lg~~~l~~~~~~~~~~~~i~v~~~ 506 (657)
++|+++.+|.+.+|||||++||++++.+|++..|+|+.+.|.||||++..+.+|..||+|+|.|+|+.|+|.++|+|+|+
T Consensus 418 slgie~~~g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~I~Vtf~ 497 (657)
T PTZ00186 418 SLGIETLGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFD 497 (657)
T ss_pred cccceecCCEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCCCcEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCcEEEEEEecCCcceeEEEEeccCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHhhhhhc
Q 006194 507 VDANGILHVTAEDKGAKNKQSITIINDKGRLSQEEIDRMVKEAEEFAEEDKKVRERVDSRNKLETYIYNMRSTINDKLAD 586 (657)
Q Consensus 507 ~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LE~~iy~~r~~l~~~~~~ 586 (657)
+|.||+|+|++.+..||++.+++|... ..||+++++++.++.+++...|+..++..+++|++|.+++.++..+.+ . .
T Consensus 498 iD~nGiL~V~a~d~~tg~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~ 574 (657)
T PTZ00186 498 IDANGICHVTAKDKATGKTQNITITAN-GGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGE-W-K 574 (657)
T ss_pred EcCCCEEEEEEEEccCCcEEEEEeccC-ccCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh-h-c
Confidence 999999999999999999999999865 679999999999999999999999999999999999999999999865 2 4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CCCCCC
Q 006194 587 KIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVIKQVYEKNGGSSSAD-SEDEEP 653 (657)
Q Consensus 587 ~~~~~e~~~i~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e~~~~~~~~~-~~~~~~ 653 (657)
.+++++++.+.+.++..++||..+ +.+.+.+++++++|++.+.++..+++..++|+.+|. +..||.
T Consensus 575 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (657)
T PTZ00186 575 YVSDAEKENVKTLVAELRKAMENP-NVAKDDLAAATDKLQKAVMECGRTEYQQAAAANSGSSSNSGEQ 641 (657)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcC-CcCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCchHH
Confidence 689999999999999999999853 446799999999999999999999887777776665 444443
No 4
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=6.9e-104 Score=882.66 Aligned_cols=599 Identities=51% Similarity=0.838 Sum_probs=561.0
Q ss_pred CCeEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEEcC-CceeEcHHHHHHHhhcccchhhHhHHhhCCCCCCH
Q 006194 31 LGTVIGIDLGTTYSCVGVYRNGRVEIIANDQGNRITPSWVAFTD-TERLIGEAAKNQAALNAERTVFDVKRLIGRKFDDP 109 (657)
Q Consensus 31 ~~~viGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~ 109 (657)
|+.+||||||||||+||++++|.+.++.|..|+|.+||+|+|.+ +++++|..|+.+...+|.++++++||++|++++++
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 80 (653)
T PRK13411 1 MGKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDT 80 (653)
T ss_pred CCcEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccch
Confidence 35799999999999999999999999999999999999999975 58999999999999999999999999999999886
Q ss_pred HHHhhhccCCeEEee-cCCceeEEEEEcCceeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHH
Q 006194 110 EVQRDIKFLPYKIVN-KGGKPYIQVKVKGETKVFSPEEISAMILQKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKD 188 (657)
Q Consensus 110 ~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~ 188 (657)
. ...+++||.++. .++... +.+.+ ..++|+++++++|++|++.|+.++|.++.++|||||++|++.||+++++
T Consensus 81 ~--~~~~~~~~~~v~~~~~~~~--~~i~~--~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 154 (653)
T PRK13411 81 E--EERSRVPYTCVKGRDDTVN--VQIRG--RNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKD 154 (653)
T ss_pred h--HHhhcCCceEEecCCCceE--EEECC--EEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHH
Confidence 4 345789999876 444443 44566 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHH
Q 006194 189 AGIIAGLNVARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYF 268 (657)
Q Consensus 189 Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l 268 (657)
||++|||+++++++||+|||++|++.....+.++||||+||||||+|++++.++.++++++.|+..+||.+||+.|++|+
T Consensus 155 Aa~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l 234 (653)
T PRK13411 155 AGTIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWL 234 (653)
T ss_pred HHHHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHH
Confidence 99999999999999999999999987655577899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHccCCceeEEEEeeccC----CceeEEEecHHHHHHHHHHHHHHHHHHH
Q 006194 269 IKLIKKKYNKDISKDNKAIGKLRRECERAKRALSSQHQVRVEIESLFD----GVDFSEPLTRARFEELNMDLFKKTMGPV 344 (657)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~l~~----~~~~~~~itr~~fe~~~~~~~~~~~~~i 344 (657)
.++|+.+++.++..+++++.+|+.+||++|+.||.+..+.+.++.+.. +.++.+.|||++|+++|+|+++++..+|
T Consensus 235 ~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i 314 (653)
T PRK13411 235 VENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEPM 314 (653)
T ss_pred HHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHH
Confidence 999999988888889999999999999999999999999999887653 3578899999999999999999999999
Q ss_pred HHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHHHhhhcCCCCCCCcceEEEeec
Q 006194 345 KKALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQGGILSGEGGDETKGILLLDVA 424 (657)
Q Consensus 345 ~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~a~~~~~~~~~~~~~~~~~d~~ 424 (657)
+++|+.+++.+.+|+.|+||||+||+|+|++.|++.|++..+..++||++|||+|||++|+.+++. ++++.+.|++
T Consensus 315 ~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~~dv~ 390 (653)
T PRK13411 315 QQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE----VKDLLLLDVT 390 (653)
T ss_pred HHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC----ccceeeeecc
Confidence 999999999999999999999999999999999999976788899999999999999999999875 6789999999
Q ss_pred ccceeEEeeCCEEEEEEecCCCCCcceeeeeeeccCCCceeEEEEEecCCcccccCcceeeEEecCCCCCCCCCCeeEEE
Q 006194 425 PLSLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQSTVTIKVYEGERSLTKDCRELGRFDLSGIPPAPRGVPQIEVT 504 (657)
Q Consensus 425 ~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~v~~g~~~~~~~~~~lg~~~l~~~~~~~~~~~~i~v~ 504 (657)
|+++|++..++.+.++|++|+++|++++.+|++..|+|+.+.|.+|||++..+.+|..||+|.+.++|+.|.|.++|+|+
T Consensus 391 p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~ 470 (653)
T PRK13411 391 PLSLGIETLGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVS 470 (653)
T ss_pred cceeeEEecCCceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCCCccEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCcEEEEEEecCCcceeEEEEeccCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHhhhh
Q 006194 505 FEVDANGILHVTAEDKGAKNKQSITIINDKGRLSQEEIDRMVKEAEEFAEEDKKVRERVDSRNKLETYIYNMRSTINDKL 584 (657)
Q Consensus 505 ~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LE~~iy~~r~~l~~~~ 584 (657)
|++|.||+|+|++.+..+|++..+++.+. .+||++++++++++++++..+|+..+++.+++|+||+|||.+|+.|++ +
T Consensus 471 f~id~~Gil~v~a~d~~t~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~~-~ 548 (653)
T PRK13411 471 FEIDVNGILKVSAQDQGTGREQSIRITNT-GGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLKE-N 548 (653)
T ss_pred EEECCCCeEEEEEeeccCCceEeeEEecc-ccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-h
Confidence 99999999999999999999999888765 679999999999999999999999999999999999999999999976 7
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 006194 585 ADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVIKQVYEKNGG 642 (657)
Q Consensus 585 ~~~~~~~e~~~i~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e~~~~ 642 (657)
..++++++|+++.+.++++++||+++ +++.++|++++++|++.+.++..++++++|+
T Consensus 549 ~~~~~~~er~~i~~~l~~~~~wL~~~-~~~~~~~~~~~~el~~~~~~i~~~~y~~~~~ 605 (653)
T PRK13411 549 GELISEELKQRAEQKVEQLEAALTDP-NISLEELKQQLEEFQQALLAIGAEVYQQGGS 605 (653)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 89999999999999999999999984 4689999999999999999999999987655
No 5
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.2e-103 Score=877.30 Aligned_cols=597 Identities=47% Similarity=0.782 Sum_probs=556.3
Q ss_pred CCeEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEEcC-CceeEcHHHHHHHhhcccchhhHhHHhhCCCCCCH
Q 006194 31 LGTVIGIDLGTTYSCVGVYRNGRVEIIANDQGNRITPSWVAFTD-TERLIGEAAKNQAALNAERTVFDVKRLIGRKFDDP 109 (657)
Q Consensus 31 ~~~viGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~ 109 (657)
|+.+||||||||||+||++++|.+.++.|..|.+.+||+|+|.+ +++++|..|+.+...+|.++++++||+||+++.+
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~- 79 (668)
T PRK13410 1 MGRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE- 79 (668)
T ss_pred CCcEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh-
Confidence 46799999999999999999999999999999999999999974 6899999999999999999999999999998765
Q ss_pred HHHhhhccCCeEEee-cCCceeEEEEEcCceeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHH
Q 006194 110 EVQRDIKFLPYKIVN-KGGKPYIQVKVKGETKVFSPEEISAMILQKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKD 188 (657)
Q Consensus 110 ~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~ 188 (657)
++.....+||.+.. .+|...+.+...+ ..++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++
T Consensus 80 -~~~~~~~~~~~v~~~~~g~~~i~~~~~~--~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 156 (668)
T PRK13410 80 -LDPESKRVPYTIRRNEQGNVRIKCPRLE--REFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRD 156 (668)
T ss_pred -hHHhhccCCeEEEECCCCcEEEEEecCC--eEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHH
Confidence 45566789999876 5666666554344 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHH
Q 006194 189 AGIIAGLNVARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYF 268 (657)
Q Consensus 189 Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l 268 (657)
||++|||+++++++||+|||++|+..... +.++||||+||||||+|++++.++.++++++.|+..+||.+||.+|++|+
T Consensus 157 Aa~~AGl~v~~li~EPtAAAlayg~~~~~-~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l 235 (668)
T PRK13410 157 AGRIAGLEVERILNEPTAAALAYGLDRSS-SQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWL 235 (668)
T ss_pred HHHHcCCCeEEEecchHHHHHHhccccCC-CCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHHH
Confidence 99999999999999999999999987653 77899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHccCCceeEEEEeeccCC----ceeEEEecHHHHHHHHHHHHHHHHHHH
Q 006194 269 IKLIKKKYNKDISKDNKAIGKLRRECERAKRALSSQHQVRVEIESLFDG----VDFSEPLTRARFEELNMDLFKKTMGPV 344 (657)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~l~~~----~~~~~~itr~~fe~~~~~~~~~~~~~i 344 (657)
.++|..+++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+ .++...|||++|+++|+++++++..+|
T Consensus 236 ~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~i 315 (668)
T PRK13410 236 AEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLRPV 315 (668)
T ss_pred HHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888899999999999999999999999999999877543 468889999999999999999999999
Q ss_pred HHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHHHhhhcCCCCCCCcceEEEeec
Q 006194 345 KKALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQGGILSGEGGDETKGILLLDVA 424 (657)
Q Consensus 345 ~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~a~~~~~~~~~~~~~~~~~d~~ 424 (657)
+++|+.+++++.+|+.|+||||+||+|+|++.|++.| +.++...+||++|||+|||++|+.+++. ++++.+.|++
T Consensus 316 ~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~~----~~~~~l~Dv~ 390 (668)
T PRK13410 316 KRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLI-PREPNQNVNPDEVVAVGAAIQAGILAGE----LKDLLLLDVT 390 (668)
T ss_pred HHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHc-CCCcccCCCCchHHHHhHHHHHHhhccc----ccceeEEeec
Confidence 9999999999999999999999999999999999999 6778889999999999999999999875 6789999999
Q ss_pred ccceeEEeeCCEEEEEEecCCCCCcceeeeeeeccCCCceeEEEEEecCCcccccCcceeeEEecCCCCCCCCCCeeEEE
Q 006194 425 PLSLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQSTVTIKVYEGERSLTKDCRELGRFDLSGIPPAPRGVPQIEVT 504 (657)
Q Consensus 425 ~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~v~~g~~~~~~~~~~lg~~~l~~~~~~~~~~~~i~v~ 504 (657)
|+++|+++.+|.+.++||+|++||++++.+|++..|+|+.+.|.||||++....+|..||+|.|+++|+.|.|.++|+|+
T Consensus 391 p~slgie~~~g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I~v~ 470 (668)
T PRK13410 391 PLSLGLETIGGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVA 470 (668)
T ss_pred cccccceecCCeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCcEEEEEEecCCcceeEEEEeccCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHhh--
Q 006194 505 FEVDANGILHVTAEDKGAKNKQSITIINDKGRLSQEEIDRMVKEAEEFAEEDKKVRERVDSRNKLETYIYNMRSTIND-- 582 (657)
Q Consensus 505 ~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LE~~iy~~r~~l~~-- 582 (657)
|++|.||+|+|++.+..||++..++|... .+||++++++++++++++...|+..+++.+++|++|+|+|.+|++|.+
T Consensus 471 f~id~nGiL~V~a~d~~tg~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~~~ 549 (668)
T PRK13410 471 FDIDANGILQVSATDRTTGREQSVTIQGA-STLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLRDAA 549 (668)
T ss_pred EEECCCcEEEEEEEEcCCCceeeeeeccc-ccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999998888765 779999999999999999999999999999999999999999999975
Q ss_pred -hhhcCCCHHHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 006194 583 -KLADKIDSDDKERIESTLKEALEWLDDN-QNAEKDDFDEKMKEVEAVCNPVIKQVYE 638 (657)
Q Consensus 583 -~~~~~~~~~e~~~i~~~l~~~~~WL~~~-~~a~~~~~~~kl~~L~~~~~~i~~r~~e 638 (657)
.+..++++++|+++...++++++|||++ .+...+.+++++++|+.+..++..|+.|
T Consensus 550 ~~~~~~~~~~~~~~~~~~l~~~~~wL~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 607 (668)
T PRK13410 550 LEFGPYFAERQRRAVESAMRDVQDSLEQDDDRELDLAVADLQEALYGLNREVRAEYKE 607 (668)
T ss_pred hhhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3889999999999999999999999987 3455667788888888888888888888
No 6
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=5.3e-103 Score=875.66 Aligned_cols=598 Identities=54% Similarity=0.872 Sum_probs=562.3
Q ss_pred CCCCCeEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEEcC-CceeEcHHHHHHHhhcccchhhHhHHhhCCCC
Q 006194 28 ATKLGTVIGIDLGTTYSCVGVYRNGRVEIIANDQGNRITPSWVAFTD-TERLIGEAAKNQAALNAERTVFDVKRLIGRKF 106 (657)
Q Consensus 28 ~~~~~~viGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~ 106 (657)
+..++.+||||||||||+||++++|.++++.|..|+|.+||+|+|.+ +++++|..|..+...+|.++++++||++|+++
T Consensus 37 ~~~~~~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~ 116 (663)
T PTZ00400 37 AKATGDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRY 116 (663)
T ss_pred hhhcCcEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCc
Confidence 33346799999999999999999999999999999999999999975 58999999999999999999999999999999
Q ss_pred CCHHHHhhhccCCeEEee-cCCceeEEEEEcCceeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHH
Q 006194 107 DDPEVQRDIKFLPYKIVN-KGGKPYIQVKVKGETKVFSPEEISAMILQKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQA 185 (657)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~ 185 (657)
+++.++...+.+||.++. .++...+. +.+ ..++|+++++++|+++++.|+.+++.++.++|||||++|++.||++
T Consensus 117 ~d~~~~~~~~~~p~~~~~~~~~~~~~~--~~~--~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a 192 (663)
T PTZ00400 117 DEDATKKEQKILPYKIVRASNGDAWIE--AQG--KKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQA 192 (663)
T ss_pred CcHHHHhhhccCCeEEEecCCCceEEE--ECC--EEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHH
Confidence 999999999999999886 55554444 456 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCceeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHH
Q 006194 186 TKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVM 265 (657)
Q Consensus 186 l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~ 265 (657)
+++||++||++++++++||+|||++|+..... +.++||||+||||||+|++++.++.++++++.|+..+||.+||..|+
T Consensus 193 ~~~Aa~~AGl~v~~li~EptAAAlay~~~~~~-~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~ 271 (663)
T PTZ00400 193 TKDAGKIAGLDVLRIINEPTAAALAFGMDKND-GKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRIL 271 (663)
T ss_pred HHHHHHHcCCceEEEeCchHHHHHHhccccCC-CcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHH
Confidence 99999999999999999999999999987643 77999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHccCCceeEEEEeeccCC----ceeEEEecHHHHHHHHHHHHHHHH
Q 006194 266 DYFIKLIKKKYNKDISKDNKAIGKLRRECERAKRALSSQHQVRVEIESLFDG----VDFSEPLTRARFEELNMDLFKKTM 341 (657)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~l~~~----~~~~~~itr~~fe~~~~~~~~~~~ 341 (657)
+|+.++|+++++.++..+++++.+|+.+||++|+.||.+.++.+.++.+..+ .++.++|||++|+++|+|+++++.
T Consensus 272 ~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~ 351 (663)
T PTZ00400 272 NYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTI 351 (663)
T ss_pred HHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHH
Confidence 9999999999998888899999999999999999999999999998876543 478899999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHHHhhhcCCCCCCCcceEEE
Q 006194 342 GPVKKALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQGGILSGEGGDETKGILLL 421 (657)
Q Consensus 342 ~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~a~~~~~~~~~~~~~~~~~ 421 (657)
.++.++|+.+++.+.+|+.|+||||+||+|+|++.|++.| +.++...+||+++||+|||++|+.+++. .+++.+.
T Consensus 352 ~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~~ 426 (663)
T PTZ00400 352 EPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIF-GKEPSKGVNPDEAVAMGAAIQAGVLKGE----IKDLLLL 426 (663)
T ss_pred HHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHh-CCCcccCCCCccceeeccHHHHHhhcCC----ccceEEE
Confidence 9999999999999999999999999999999999999999 6778889999999999999999999875 6789999
Q ss_pred eecccceeEEeeCCEEEEEEecCCCCCcceeeeeeeccCCCceeEEEEEecCCcccccCcceeeEEecCCCCCCCCCCee
Q 006194 422 DVAPLSLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQSTVTIKVYEGERSLTKDCRELGRFDLSGIPPAPRGVPQI 501 (657)
Q Consensus 422 d~~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~v~~g~~~~~~~~~~lg~~~l~~~~~~~~~~~~i 501 (657)
|++|++||+++.+|.+.++||+|+++|++++++|++..|+|+.+.|.||||++..+.+|..||+|.|.++|+.|.|.++|
T Consensus 427 dv~p~slgi~~~~g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i 506 (663)
T PTZ00400 427 DVTPLSLGIETLGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQI 506 (663)
T ss_pred eccccceEEEecCCeeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCCcEEEEEEecCCcceeEEEEeccCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHh
Q 006194 502 EVTFEVDANGILHVTAEDKGAKNKQSITIINDKGRLSQEEIDRMVKEAEEFAEEDKKVRERVDSRNKLETYIYNMRSTIN 581 (657)
Q Consensus 502 ~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LE~~iy~~r~~l~ 581 (657)
+|+|.+|.||+|+|++.+..+|+...++|+.. .+||++++++++++++++...|+..+++.+++|+||+|||.+|+.|.
T Consensus 507 ~v~f~id~~Gil~v~a~~~~~~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~ 585 (663)
T PTZ00400 507 EVTFDVDANGIMNISAVDKSTGKKQEITIQSS-GGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLS 585 (663)
T ss_pred EEEEEECCCCCEEEEEEeccCCcEEEEEeecc-ccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998765 67999999999999999999999999999999999999999999997
Q ss_pred hhhhcCCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006194 582 DKLADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVIKQVYEKN 640 (657)
Q Consensus 582 ~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e~~ 640 (657)
+ +...+++++++++.+.++++++||+++ +.++|++++++|++.+.++..++|+++
T Consensus 586 e-~~~~~s~~ere~i~~~l~~~~~WL~~~---d~~~i~~k~~eL~~~l~~l~~k~y~~~ 640 (663)
T PTZ00400 586 D-LKDKISDADKDELKQKITKLRSTLSSE---DVDSIKDKTKQLQEASWKISQQAYKQG 640 (663)
T ss_pred H-HhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6 889999999999999999999999986 688999999999999999999887655
No 7
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=1.2e-102 Score=872.84 Aligned_cols=600 Identities=50% Similarity=0.809 Sum_probs=560.9
Q ss_pred CCeEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEEcC-CceeEcHHHHHHHhhcccchhhHhHHhhCCCCCCH
Q 006194 31 LGTVIGIDLGTTYSCVGVYRNGRVEIIANDQGNRITPSWVAFTD-TERLIGEAAKNQAALNAERTVFDVKRLIGRKFDDP 109 (657)
Q Consensus 31 ~~~viGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~ 109 (657)
++.+||||||||||+||++++|.+.++.|..|++.+||+|+|.+ +++++|..|+.+...+|.++++++||+||+++.+
T Consensus 38 ~~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d- 116 (673)
T PLN03184 38 AEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE- 116 (673)
T ss_pred CCCEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch-
Confidence 35699999999999999999999999999999999999999975 5899999999999999999999999999999865
Q ss_pred HHHhhhccCCeEEee-cCCceeEEEEEcCceeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHH
Q 006194 110 EVQRDIKFLPYKIVN-KGGKPYIQVKVKGETKVFSPEEISAMILQKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKD 188 (657)
Q Consensus 110 ~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~ 188 (657)
++...+.+||.++. .++...+.+...+ ..++|+++++++|+++++.|+.+++.++.++|||||++|++.||+++++
T Consensus 117 -~~~~~~~~~~~v~~~~~~~v~~~~~~~~--~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 193 (673)
T PLN03184 117 -VDEESKQVSYRVVRDENGNVKLDCPAIG--KQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKD 193 (673)
T ss_pred -hhhhhhcCCeEEEecCCCcEEEEEecCC--eEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHH
Confidence 45667789999886 5666666665556 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHH
Q 006194 189 AGIIAGLNVARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYF 268 (657)
Q Consensus 189 Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l 268 (657)
||++||++++++++||+|||++|+..... +..+||||+||||||+|++++.++.++++++.|+.++||.+||+.|++|+
T Consensus 194 Aa~~AGl~v~~li~EPtAAAlayg~~~~~-~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~ 272 (673)
T PLN03184 194 AGRIAGLEVLRIINEPTAASLAYGFEKKS-NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWL 272 (673)
T ss_pred HHHHCCCCeEEEeCcHHHHHHHhhcccCC-CCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHH
Confidence 99999999999999999999999987653 67899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHccCCceeEEEEeeccC----CceeEEEecHHHHHHHHHHHHHHHHHHH
Q 006194 269 IKLIKKKYNKDISKDNKAIGKLRRECERAKRALSSQHQVRVEIESLFD----GVDFSEPLTRARFEELNMDLFKKTMGPV 344 (657)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~l~~----~~~~~~~itr~~fe~~~~~~~~~~~~~i 344 (657)
.++|+.+++.++..+++.+.+|+.+||++|+.||.+..+.+.++++.. +.++...|||++|+++|.++++++..+|
T Consensus 273 ~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~~i 352 (673)
T PLN03184 273 ASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKTPV 352 (673)
T ss_pred HHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHHHH
Confidence 999999999888889999999999999999999999999999886642 3578899999999999999999999999
Q ss_pred HHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHHHhhhcCCCCCCCcceEEEeec
Q 006194 345 KKALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQGGILSGEGGDETKGILLLDVA 424 (657)
Q Consensus 345 ~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~a~~~~~~~~~~~~~~~~~d~~ 424 (657)
+++|+.++++..+|+.|+||||+||+|.|++.|++.| +..+...+||+++||+|||++|+.+++. ++++.+.|++
T Consensus 353 ~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~~----~~~~~~~dv~ 427 (673)
T PLN03184 353 ENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLT-GKDPNVTVNPDEVVALGAAVQAGVLAGE----VSDIVLLDVT 427 (673)
T ss_pred HHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHh-CCCcccccCcchHHHHHHHHHHHHhccC----ccceEEEecc
Confidence 9999999999999999999999999999999999999 6778888999999999999999999875 6789999999
Q ss_pred ccceeEEeeCCEEEEEEecCCCCCcceeeeeeeccCCCceeEEEEEecCCcccccCcceeeEEecCCCCCCCCCCeeEEE
Q 006194 425 PLSLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQSTVTIKVYEGERSLTKDCRELGRFDLSGIPPAPRGVPQIEVT 504 (657)
Q Consensus 425 ~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~v~~g~~~~~~~~~~lg~~~l~~~~~~~~~~~~i~v~ 504 (657)
|++||+++.++.+.++||+|+++|++++++|++..|+|+.+.|.+|||++....+|..||+|.|+++|+.+.|.++|+|+
T Consensus 428 p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~ 507 (673)
T PLN03184 428 PLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVK 507 (673)
T ss_pred cccceEEecCCeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCcEEEEEEecCCcceeEEEEeccCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHhhhh
Q 006194 505 FEVDANGILHVTAEDKGAKNKQSITIINDKGRLSQEEIDRMVKEAEEFAEEDKKVRERVDSRNKLETYIYNMRSTINDKL 584 (657)
Q Consensus 505 ~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LE~~iy~~r~~l~~~~ 584 (657)
|++|.||+|+|++.+..++++..++|+.. .+||++++++++++++++..+|+..+++.+++|+||+|||.+|++|.+ +
T Consensus 508 f~id~~GiL~V~a~~~~t~~~~~~~i~~~-~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~e-~ 585 (673)
T PLN03184 508 FDIDANGILSVSATDKGTGKKQDITITGA-STLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLKE-L 585 (673)
T ss_pred EEeCCCCeEEEEEEecCCCeEEEEEeccc-ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHH-H
Confidence 99999999999999999999999998764 679999999999999999999999999999999999999999999975 8
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 006194 585 ADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVIKQVYEKNGGSSS 645 (657)
Q Consensus 585 ~~~~~~~e~~~i~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e~~~~~~~ 645 (657)
.+++++++++++.+.++++++||+++ +.+++++++++|.+.+.++..+++.++|++|+
T Consensus 586 ~~~~~~eer~~l~~~l~~~e~wL~~~---d~~~ik~~~~~l~~~l~~l~~~~~~~~~~~~~ 643 (673)
T PLN03184 586 GDKVPADVKEKVEAKLKELKDAIASG---STQKMKDAMAALNQEVMQIGQSLYNQPGAGGA 643 (673)
T ss_pred hhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 89999999999999999999999986 67899999999999999999999877755544
No 8
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.9e-101 Score=864.88 Aligned_cols=594 Identities=58% Similarity=0.938 Sum_probs=559.2
Q ss_pred CCeEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEEc-CCceeEcHHHHHHHhhcccchhhHhHHhhCCCCCCH
Q 006194 31 LGTVIGIDLGTTYSCVGVYRNGRVEIIANDQGNRITPSWVAFT-DTERLIGEAAKNQAALNAERTVFDVKRLIGRKFDDP 109 (657)
Q Consensus 31 ~~~viGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~-~~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~ 109 (657)
|+.+||||||||||+||++++|.+.++.|..|++.+||+|+|. ++++++|+.|..+...+|.++++++||+||++ ++
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~ 78 (627)
T PRK00290 1 MGKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DE 78 (627)
T ss_pred CCcEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--ch
Confidence 4579999999999999999999999999999999999999997 66899999999999999999999999999998 66
Q ss_pred HHHhhhccCCeEEee-cCCceeEEEEEcCceeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHH
Q 006194 110 EVQRDIKFLPYKIVN-KGGKPYIQVKVKGETKVFSPEEISAMILQKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKD 188 (657)
Q Consensus 110 ~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~ 188 (657)
.++...+.+||.++. .+|... +.++| ..++|+++++++|+++++.|+.+++.++.++|||||++|++.||+++++
T Consensus 79 ~~~~~~~~~p~~~~~~~~~~~~--~~~~~--~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~ 154 (627)
T PRK00290 79 EVQKDIKLVPYKIVKADNGDAW--VEIDG--KKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKD 154 (627)
T ss_pred HHHHHhhcCCeEEEEcCCCceE--EEECC--EEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHH
Confidence 778888899999986 444444 34566 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHH
Q 006194 189 AGIIAGLNVARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYF 268 (657)
Q Consensus 189 Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l 268 (657)
||++|||+++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.|+..+||.+||.+|++|+
T Consensus 155 Aa~~AGl~v~~li~EptAAAl~y~~~~~-~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~ 233 (627)
T PRK00290 155 AGKIAGLEVLRIINEPTAAALAYGLDKK-GDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYL 233 (627)
T ss_pred HHHHcCCceEEEecchHHHHHHhhhccC-CCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHHH
Confidence 9999999999999999999999998764 468899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHccCCceeEEEEeeccCC----ceeEEEecHHHHHHHHHHHHHHHHHHH
Q 006194 269 IKLIKKKYNKDISKDNKAIGKLRRECERAKRALSSQHQVRVEIESLFDG----VDFSEPLTRARFEELNMDLFKKTMGPV 344 (657)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~l~~~----~~~~~~itr~~fe~~~~~~~~~~~~~i 344 (657)
.++|+.+++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+..+ .++.+.|||++|+++|+|+++++..+|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i 313 (627)
T PRK00290 234 ADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIEPC 313 (627)
T ss_pred HHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888899999999999999999999999999999877543 678899999999999999999999999
Q ss_pred HHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHHHhhhcCCCCCCCcceEEEeec
Q 006194 345 KKALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQGGILSGEGGDETKGILLLDVA 424 (657)
Q Consensus 345 ~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~a~~~~~~~~~~~~~~~~~d~~ 424 (657)
+++|+.++++..+|+.|+||||+||+|+|++.|++.| +.++..++||++|||+|||++|+.+++. ++++.+.|++
T Consensus 314 ~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeava~GAa~~aa~l~~~----~~~~~~~d~~ 388 (627)
T PRK00290 314 KQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAGD----VKDVLLLDVT 388 (627)
T ss_pred HHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHh-CCCCCcCcCChHHHHHhHHHHHHHhcCC----ccceeeeecc
Confidence 9999999999999999999999999999999999999 6788889999999999999999999875 6789999999
Q ss_pred ccceeEEeeCCEEEEEEecCCCCCcceeeeeeeccCCCceeEEEEEecCCcccccCcceeeEEecCCCCCCCCCCeeEEE
Q 006194 425 PLSLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQSTVTIKVYEGERSLTKDCRELGRFDLSGIPPAPRGVPQIEVT 504 (657)
Q Consensus 425 ~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~v~~g~~~~~~~~~~lg~~~l~~~~~~~~~~~~i~v~ 504 (657)
|+++|++..++.+.++||+|+++|++++++|++..|+|+.+.|.+|||++..+.+|..||+|.|+++|+.++|.++|+|+
T Consensus 389 ~~slgi~~~~~~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~ 468 (627)
T PRK00290 389 PLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVT 468 (627)
T ss_pred ceEEEEEecCCeEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCCCCCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred EEEcCCCcEEEEEEecCCcceeEEEEeccCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHhhhh
Q 006194 505 FEVDANGILHVTAEDKGAKNKQSITIINDKGRLSQEEIDRMVKEAEEFAEEDKKVRERVDSRNKLETYIYNMRSTINDKL 584 (657)
Q Consensus 505 ~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LE~~iy~~r~~l~~~~ 584 (657)
|++|.||+|+|++.+..+|+..+++|... .+||+++++++++++.++...|+..+++.+++|+||+|+|.+|+.|++ +
T Consensus 469 f~~d~~gil~v~a~~~~~~~~~~~~i~~~-~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~~-~ 546 (627)
T PRK00290 469 FDIDANGIVHVSAKDKGTGKEQSITITAS-SGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLKE-L 546 (627)
T ss_pred EEECCCceEEEEEEEccCCceeEEEeccc-cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 99999999999999999999999998765 679999999999999999999999999999999999999999999974 8
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 006194 585 ADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVIKQVYEKNG 641 (657)
Q Consensus 585 ~~~~~~~e~~~i~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e~~~ 641 (657)
..++++++++++.+.++++++||+++ +.++|++++++|+++++++..|+++.++
T Consensus 547 ~~~~~~~e~~~i~~~l~~~~~wL~~~---~~~~i~~k~~~L~~~~~~~~~~~~~~~~ 600 (627)
T PRK00290 547 GDKVPADEKEKIEAAIKELKEALKGE---DKEAIKAKTEELTQASQKLGEAMYQQAQ 600 (627)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 88999999999999999999999986 6899999999999999999999987543
No 9
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-104 Score=831.68 Aligned_cols=608 Identities=65% Similarity=1.034 Sum_probs=589.5
Q ss_pred CCeEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEEcCCceeEcHHHHHHHhhcccchhhHhHHhhCCCCCCHH
Q 006194 31 LGTVIGIDLGTTYSCVGVYRNGRVEIIANDQGNRITPSWVAFTDTERLIGEAAKNQAALNAERTVFDVKRLIGRKFDDPE 110 (657)
Q Consensus 31 ~~~viGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~ 110 (657)
.+.++|||||||+++|+++.+|.++++.|..|++.+||+|+|.++++++|..|..+...+|.++++.+||++|+.++++.
T Consensus 6 ~~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d~~ 85 (620)
T KOG0101|consen 6 ESVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDDPE 85 (620)
T ss_pred ccceeeEeccCccceeeeEcCCcceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCccccchh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCeEEee-cCCceeEEEEEcCceeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHH
Q 006194 111 VQRDIKFLPYKIVN-KGGKPYIQVKVKGETKVFSPEEISAMILQKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKDA 189 (657)
Q Consensus 111 ~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~A 189 (657)
++..+++|||.+.. .++.+.+.+.++++...++|+++.+++|.+++..|+.+++..+.++|+|||+||++.||+++.+|
T Consensus 86 v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~~A 165 (620)
T KOG0101|consen 86 VQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATKDA 165 (620)
T ss_pred hHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHHHHH
Confidence 99999999999995 66789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeecchhHHHHHHhccccCC-CcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHH
Q 006194 190 GIIAGLNVARIINEPTAAAIAYGLDKKG-GEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYF 268 (657)
Q Consensus 190 a~~AGl~~~~li~Ep~Aaal~y~~~~~~-~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l 268 (657)
+.+||++++++++||+|||++|++.... ...+|+|+|+||||||++++.+.+|.+.+.++.++.++||++||+.|.+|+
T Consensus 166 ~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~~h~ 245 (620)
T KOG0101|consen 166 ALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLVNHF 245 (620)
T ss_pred HHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHHHHHHH
Confidence 9999999999999999999999987764 677899999999999999999999988999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHccCCceeEEEEeeccCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHH
Q 006194 269 IKLIKKKYNKDISKDNKAIGKLRRECERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNMDLFKKTMGPVKKAL 348 (657)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~l~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l 348 (657)
..+|+++++.++..+++++.||+.+||++|+.||....+++.+++|++|.++...|+|.+|+.++.+++.++..++.++|
T Consensus 246 ~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~~~v~~~L 325 (620)
T KOG0101|consen 246 AAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVEKAL 325 (620)
T ss_pred HHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHHHhhhcCCCCCCCcceEEEeecccce
Q 006194 349 EDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQGGILSGEGGDETKGILLLDVAPLSL 428 (657)
Q Consensus 349 ~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~a~~~~~~~~~~~~~~~~~d~~~~~~ 428 (657)
+++++++.+|+.|+||||++|+|.+++.+++.|+++++..++|||++||+|||++||.+++.......++.+.|+.|.++
T Consensus 326 ~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid~~pl~~ 405 (620)
T KOG0101|consen 326 KDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDVAPLSL 405 (620)
T ss_pred HhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeeeecccccc
Confidence 99999999999999999999999999999999988999999999999999999999999988766678999999999999
Q ss_pred eEEeeCCEEEEEEecCCCCCcceeeeeeeccCCCceeEEEEEecCCcccccCcceeeEEecCCCCCCCCCCeeEEEEEEc
Q 006194 429 GIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQSTVTIKVYEGERSLTKDCRELGRFDLSGIPPAPRGVPQIEVTFEVD 508 (657)
Q Consensus 429 gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~v~~g~~~~~~~~~~lg~~~l~~~~~~~~~~~~i~v~~~~d 508 (657)
||+..++.|.++|++|+.+|++++.+|+++.|+|+.+.|.||+|++...++|..+|.|.|.|+||+|.|++.|+++|.+|
T Consensus 406 gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~IevtfdiD 485 (620)
T KOG0101|consen 406 GVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDID 485 (620)
T ss_pred cccccCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCcceeEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEEecCCcceeEEEEeccCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHhhhhhcCC
Q 006194 509 ANGILHVTAEDKGAKNKQSITIINDKGRLSQEEIDRMVKEAEEFAEEDKKVRERVDSRNKLETYIYNMRSTINDKLADKI 588 (657)
Q Consensus 509 ~~g~l~v~~~~~~~~~~~~~~i~~~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LE~~iy~~r~~l~~~~~~~~ 588 (657)
.||+|.|++.++.||+...++|+++..+||+++|++|..+.+.+..+|...+.+.+++|.||+|+|.++..+++.- ..+
T Consensus 486 ~ngiL~Vta~d~stgK~~~i~i~n~~grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~~~~-~~i 564 (620)
T KOG0101|consen 486 ANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVEDEK-GKI 564 (620)
T ss_pred CCcEEEEeeccccCCccceEEEecccceeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhhhhhc-ccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998743 889
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006194 589 DSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVIKQVYEK 639 (657)
Q Consensus 589 ~~~e~~~i~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e~ 639 (657)
+++++.++.+.++++..||+.+..+.+++|++|..+|+..++||+.++++.
T Consensus 565 ~~~~~~~~~~~~~~~i~wl~~~~~~~~~e~e~k~~el~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 565 NEEDKQKILDKCNEVINWLDKNQLAEKEEFEHKQKELELVCNPIISKLYQG 615 (620)
T ss_pred ChhhhhhHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhccHHHHhhhcc
Confidence 999999999999999999999977789999999999999999999998876
No 10
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=4.3e-100 Score=850.96 Aligned_cols=593 Identities=54% Similarity=0.844 Sum_probs=555.7
Q ss_pred CCeEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEEcC-CceeEcHHHHHHHhhcccchhhHhHHhhCCCCCCH
Q 006194 31 LGTVIGIDLGTTYSCVGVYRNGRVEIIANDQGNRITPSWVAFTD-TERLIGEAAKNQAALNAERTVFDVKRLIGRKFDDP 109 (657)
Q Consensus 31 ~~~viGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~ 109 (657)
|+.+||||||||||+||++++|.+.++.|..|.+.+||+|+|.+ +++++|..|+.+...+|.++++++||+||+.+++
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~- 79 (621)
T CHL00094 1 MGKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE- 79 (621)
T ss_pred CCceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH-
Confidence 35799999999999999999999999999999999999999975 5899999999999999999999999999998764
Q ss_pred HHHhhhccCCeEEee-cCCceeEEEEEcCceeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHH
Q 006194 110 EVQRDIKFLPYKIVN-KGGKPYIQVKVKGETKVFSPEEISAMILQKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKD 188 (657)
Q Consensus 110 ~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~ 188 (657)
+....+.+||.+.. .+|...+.+...+ ..++|+++++++|+++++.|+.+++.++.++|||||++|++.||+++++
T Consensus 80 -~~~~~~~~~~~v~~~~~g~i~~~~~~~~--~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~ 156 (621)
T CHL00094 80 -ISEEAKQVSYKVKTDSNGNIKIECPALN--KDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKD 156 (621)
T ss_pred -HHhhhhcCCeEEEECCCCCEEEEEecCC--eEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHH
Confidence 55666779999886 5566666655555 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHH
Q 006194 189 AGIIAGLNVARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYF 268 (657)
Q Consensus 189 Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l 268 (657)
||++||++++++++||+|||++|+..... +..+||||+||||||+|++++.++.++++++.|+..+||++||..|++|+
T Consensus 157 Aa~~AGl~v~~li~EptAAAlay~~~~~~-~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~ 235 (621)
T CHL00094 157 AGKIAGLEVLRIINEPTAASLAYGLDKKN-NETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWL 235 (621)
T ss_pred HHHHcCCceEEEeccHHHHHHHhccccCC-CCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHH
Confidence 99999999999999999999999987653 67899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHccCCceeEEEEeeccC----CceeEEEecHHHHHHHHHHHHHHHHHHH
Q 006194 269 IKLIKKKYNKDISKDNKAIGKLRRECERAKRALSSQHQVRVEIESLFD----GVDFSEPLTRARFEELNMDLFKKTMGPV 344 (657)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~l~~----~~~~~~~itr~~fe~~~~~~~~~~~~~i 344 (657)
.++|+++++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+.. +.++...|||++|+++++++++++..+|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i 315 (621)
T CHL00094 236 IKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPV 315 (621)
T ss_pred HHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHH
Confidence 999999999888889999999999999999999999999999987653 2578889999999999999999999999
Q ss_pred HHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHHHhhhcCCCCCCCcceEEEeec
Q 006194 345 KKALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQGGILSGEGGDETKGILLLDVA 424 (657)
Q Consensus 345 ~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~a~~~~~~~~~~~~~~~~~d~~ 424 (657)
+++|+.+++++.+|+.|+|+||+||+|.|++.|++.| +.++...+||+++||+|||++|+.+++. .+++.+.|++
T Consensus 316 ~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-g~~~~~~~~pdeava~GAA~~aa~ls~~----~~~~~~~d~~ 390 (621)
T CHL00094 316 ENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLL-GKKPNQSVNPDEVVAIGAAVQAGVLAGE----VKDILLLDVT 390 (621)
T ss_pred HHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHh-CCCcCcCCCchhHHHhhhHHHHHHhcCC----ccceeeeeee
Confidence 9999999999999999999999999999999999999 6778889999999999999999999875 6789999999
Q ss_pred ccceeEEeeCCEEEEEEecCCCCCcceeeeeeeccCCCceeEEEEEecCCcccccCcceeeEEecCCCCCCCCCCeeEEE
Q 006194 425 PLSLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQSTVTIKVYEGERSLTKDCRELGRFDLSGIPPAPRGVPQIEVT 504 (657)
Q Consensus 425 ~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~v~~g~~~~~~~~~~lg~~~l~~~~~~~~~~~~i~v~ 504 (657)
|+++|++..++.+.++||+|+++|++++.+|++..++|+.+.|.+|||++..+.+|..||+|.|.++|+.++|.++|+|+
T Consensus 391 ~~~lgi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i~v~ 470 (621)
T CHL00094 391 PLSLGVETLGGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVT 470 (621)
T ss_pred ceeeeeeccCCEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred EEEcCCCcEEEEEEecCCcceeEEEEeccCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHhhhh
Q 006194 505 FEVDANGILHVTAEDKGAKNKQSITIINDKGRLSQEEIDRMVKEAEEFAEEDKKVRERVDSRNKLETYIYNMRSTINDKL 584 (657)
Q Consensus 505 ~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LE~~iy~~r~~l~~~~ 584 (657)
|++|.||+|+|++.+..+|+...++|.+. .+||+++++++++++.++...|+..+++.+++|+||+|||.+|+++++ +
T Consensus 471 f~id~~Gil~v~~~~~~t~~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~~-~ 548 (621)
T CHL00094 471 FDIDANGILSVTAKDKGTGKEQSITIQGA-STLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLKE-L 548 (621)
T ss_pred EEECCCCeEEEEEeeccCCceeeeeeccc-hhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHHH-H
Confidence 99999999999999999999998888754 679999999999999999999999999999999999999999999975 8
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 006194 585 ADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVIKQVYE 638 (657)
Q Consensus 585 ~~~~~~~e~~~i~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e 638 (657)
..++++++|+++.+.++++++|||++ +.+++++++++|++.++++..+++.
T Consensus 549 ~~~~~~~~~~~~~~~l~~~~~wl~~~---~~~~~~~~~~~l~~~~~~~~~kl~~ 599 (621)
T CHL00094 549 KDKISEEKKEKIENLIKKLRQALQND---NYESIKSLLEELQKALMEIGKEVYS 599 (621)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999986 5689999999999999999999877
No 11
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=1.6e-99 Score=847.30 Aligned_cols=588 Identities=57% Similarity=0.906 Sum_probs=552.0
Q ss_pred EEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEEcCC-ceeEcHHHHHHHhhcccchhhHhHHhhCCCCCCHHHH
Q 006194 34 VIGIDLGTTYSCVGVYRNGRVEIIANDQGNRITPSWVAFTDT-ERLIGEAAKNQAALNAERTVFDVKRLIGRKFDDPEVQ 112 (657)
Q Consensus 34 viGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~~~ 112 (657)
+||||||||||+||++++|.+.++.|..|++.+||+|+|.++ ++++|..|..+...+|.++++++||+||+++ +.++
T Consensus 2 viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~--~~~~ 79 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRF--DEVT 79 (595)
T ss_pred EEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCc--hHHH
Confidence 799999999999999999999999999999999999999865 8999999999999999999999999999987 3466
Q ss_pred hhhccCCeEEeecCCceeEEEEEcCceeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHH
Q 006194 113 RDIKFLPYKIVNKGGKPYIQVKVKGETKVFSPEEISAMILQKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKDAGII 192 (657)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa~~ 192 (657)
...+.+||.+...+|...+. +++ ..++|+++++++|+++++.|+.+++.++.++|||||++|++.||+++++||++
T Consensus 80 ~~~~~~~~~v~~~~~~~~~~--v~~--~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa~~ 155 (595)
T TIGR02350 80 EEAKRVPYKVVGDGGDVRVK--VDG--KEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKI 155 (595)
T ss_pred HHhhcCCeeEEcCCCceEEE--ECC--EEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 77788999955566655544 456 78999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHHHHHH
Q 006194 193 AGLNVARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFIKLI 272 (657)
Q Consensus 193 AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~ 272 (657)
||++++++++||+|||++|+......+.++||||+||||+|+|++++.++.++++++.|+..+||.+||+.|++|+.++|
T Consensus 156 AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~~ 235 (595)
T TIGR02350 156 AGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEF 235 (595)
T ss_pred cCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHHHHHH
Confidence 99999999999999999999876445789999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCHHHHHHHHHHHHHHHHHccCCceeEEEEeeccCC----ceeEEEecHHHHHHHHHHHHHHHHHHHHHHH
Q 006194 273 KKKYNKDISKDNKAIGKLRRECERAKRALSSQHQVRVEIESLFDG----VDFSEPLTRARFEELNMDLFKKTMGPVKKAL 348 (657)
Q Consensus 273 ~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~l~~~----~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l 348 (657)
+++++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+..+ .++.+.|||++|+++|+|+++++..+++++|
T Consensus 236 ~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~~l 315 (595)
T TIGR02350 236 KKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQAL 315 (595)
T ss_pred HHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888899999999999999999999999999998876543 5788999999999999999999999999999
Q ss_pred HHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHHHhhhcCCCCCCCcceEEEeecccce
Q 006194 349 EDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQGGILSGEGGDETKGILLLDVAPLSL 428 (657)
Q Consensus 349 ~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~a~~~~~~~~~~~~~~~~~d~~~~~~ 428 (657)
+.+++++.+|+.|+|+||+||+|+|++.|++.| +.++..++||++|||+|||++|+.+++. ++++.+.|++|+++
T Consensus 316 ~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f-~~~~~~~~~pdeava~GAa~~aa~l~~~----~~~~~~~d~~~~~i 390 (595)
T TIGR02350 316 KDAGLSASDIDEVILVGGSTRIPAVQELVKDFF-GKEPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDVTPLSL 390 (595)
T ss_pred HHcCCCHhHCcEEEEECCcccChHHHHHHHHHh-CCcccCCcCcHHHHHHHHHHHHHHhcCC----cccceeeeccccee
Confidence 999999999999999999999999999999999 5788889999999999999999999875 67899999999999
Q ss_pred eEEeeCCEEEEEEecCCCCCcceeeeeeeccCCCceeEEEEEecCCcccccCcceeeEEecCCCCCCCCCCeeEEEEEEc
Q 006194 429 GIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQSTVTIKVYEGERSLTKDCRELGRFDLSGIPPAPRGVPQIEVTFEVD 508 (657)
Q Consensus 429 gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~v~~g~~~~~~~~~~lg~~~l~~~~~~~~~~~~i~v~~~~d 508 (657)
|++..++.+.++|++|+++|++++++|++..|+|+.+.|.+|||++..+.+|..||++.|+++|+.++|.++|+++|++|
T Consensus 391 gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d 470 (595)
T TIGR02350 391 GIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDID 470 (595)
T ss_pred EEEecCCceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCCceEEEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred CCCcEEEEEEecCCcceeEEEEeccCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHhhhhhcCC
Q 006194 509 ANGILHVTAEDKGAKNKQSITIINDKGRLSQEEIDRMVKEAEEFAEEDKKVRERVDSRNKLETYIYNMRSTINDKLADKI 588 (657)
Q Consensus 509 ~~g~l~v~~~~~~~~~~~~~~i~~~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LE~~iy~~r~~l~~~~~~~~ 588 (657)
.||+|+|++.+..+|+...++++.. .+||+++++++++++.++...|+..+++.+++|+||+|||.+|+.|++ +..++
T Consensus 471 ~~G~l~v~~~~~~~~~~~~~~i~~~-~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~~-~~~~~ 548 (595)
T TIGR02350 471 ANGILHVSAKDKGTGKEQSITITAS-SGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLKE-AGDKL 548 (595)
T ss_pred CCCeEEEEEEEccCCceEEEEeccc-cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH-hhccC
Confidence 9999999999999999999998765 679999999999999999999999999999999999999999999975 68899
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 006194 589 DSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVIKQVY 637 (657)
Q Consensus 589 ~~~e~~~i~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~ 637 (657)
++++++++.+.++++++||+++ +.+++++++++|++.++++..++|
T Consensus 549 ~~~e~~~l~~~l~~~~~wL~~~---d~~~i~~~~~~l~~~~~~~~~~~~ 594 (595)
T TIGR02350 549 PAEEKEKIEKAVAELKEALKGE---DVEEIKAKTEELQQALQKLAEAMY 594 (595)
T ss_pred CHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999986 678999999999999999998764
No 12
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=2.1e-97 Score=823.75 Aligned_cols=584 Identities=42% Similarity=0.690 Sum_probs=541.1
Q ss_pred EEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEEcCC-ceeEcHHHHHHHhhcccchhhHhHHhhCCCCCCHHHH
Q 006194 34 VIGIDLGTTYSCVGVYRNGRVEIIANDQGNRITPSWVAFTDT-ERLIGEAAKNQAALNAERTVFDVKRLIGRKFDDPEVQ 112 (657)
Q Consensus 34 viGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~~~ 112 (657)
+||||||||||+||++++|.++++.|..|.+.+||+|+|.++ .+++|..|+.+...+|.++++.+||++|+++.++..
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~- 79 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKT- 79 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhh-
Confidence 489999999999999999999999999999999999999865 899999999999999999999999999998876432
Q ss_pred hhhccCCeEEee-cCCceeEEEEEcCceeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHH
Q 006194 113 RDIKFLPYKIVN-KGGKPYIQVKVKGETKVFSPEEISAMILQKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKDAGI 191 (657)
Q Consensus 113 ~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa~ 191 (657)
.+.+||.+.. .+|...+.+ .+ ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||+
T Consensus 80 --~~~~~~~~~~~~~~~~~~~~--~~--~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~ 153 (599)
T TIGR01991 80 --FSILPYRFVDGPGEMVRLRT--VQ--GTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAAR 153 (599)
T ss_pred --cccCCEEEEEcCCCceEEEe--CC--CEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 5678998876 455555443 33 4789999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHHHHH
Q 006194 192 IAGLNVARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFIKL 271 (657)
Q Consensus 192 ~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~ 271 (657)
+||++++++++||+|||++|++.... +.++||||+||||+|+|++++.++.++++++.|+..+||.+||+.|++|+.++
T Consensus 154 ~AGl~v~~li~EPtAAAlay~~~~~~-~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~ 232 (599)
T TIGR01991 154 LAGLNVLRLLNEPTAAAVAYGLDKAS-EGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQ 232 (599)
T ss_pred HcCCCceEEecCHHHHHHHHhhccCC-CCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999987653 77899999999999999999999999999999999999999999999998754
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHHHHHHHHccCCceeEEEEeeccCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 006194 272 IKKKYNKDISKDNKAIGKLRRECERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNMDLFKKTMGPVKKALEDA 351 (657)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~l~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~ 351 (657)
++.+...+++.+.+|+.+||++|+.||.+..+.+.++. ++.++.++|||++|+++|+|+++++..+|.++|+.+
T Consensus 233 ----~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~a 306 (599)
T TIGR01991 233 ----LGISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDA 306 (599)
T ss_pred ----hCCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45555678899999999999999999999999888874 678999999999999999999999999999999999
Q ss_pred CCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHHHhhhcCCCCCCCcceEEEeecccceeEE
Q 006194 352 GLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQGGILSGEGGDETKGILLLDVAPLSLGIE 431 (657)
Q Consensus 352 ~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~a~~~~~~~~~~~~~~~~~d~~~~~~gi~ 431 (657)
++++.+|+.|+||||+||+|+|++.|++.| +..+..++||++|||+|||++|+.+++. +..+++.+.|++|+++|++
T Consensus 307 ~~~~~~id~ViLvGGssriP~V~~~l~~~f-~~~~~~~~npdeaVA~GAai~a~~l~~~--~~~~~~~l~dv~p~slgi~ 383 (599)
T TIGR01991 307 GLSVEEIKGVVLVGGSTRMPLVRRAVAELF-GQEPLTDIDPDQVVALGAAIQADLLAGN--RIGNDLLLLDVTPLSLGIE 383 (599)
T ss_pred CCChhhCCEEEEECCcCCChHHHHHHHHHh-CCCCCCCCCCcHHHHHHHHHHHHHhccc--cccCceEEEEeeeeeeEEE
Confidence 999999999999999999999999999999 5677778999999999999999999876 4467899999999999999
Q ss_pred eeCCEEEEEEecCCCCCcceeeeeeeccCCCceeEEEEEecCCcccccCcceeeEEecCCCCCCCCCCeeEEEEEEcCCC
Q 006194 432 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQSTVTIKVYEGERSLTKDCRELGRFDLSGIPPAPRGVPQIEVTFEVDANG 511 (657)
Q Consensus 432 ~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~v~~g~~~~~~~~~~lg~~~l~~~~~~~~~~~~i~v~~~~d~~g 511 (657)
+.+|.+.++||||+++|++++..|++..|+|+.+.|.||||++..+.+|..||+|.|.++|+.|.|.++|+|+|++|.||
T Consensus 384 ~~~g~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~g 463 (599)
T TIGR01991 384 TMGGLVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADG 463 (599)
T ss_pred ecCCEEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEEEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEecCCcceeEEEEeccCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHhhhhhcCCCHH
Q 006194 512 ILHVTAEDKGAKNKQSITIINDKGRLSQEEIDRMVKEAEEFAEEDKKVRERVDSRNKLETYIYNMRSTINDKLADKIDSD 591 (657)
Q Consensus 512 ~l~v~~~~~~~~~~~~~~i~~~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LE~~iy~~r~~l~~~~~~~~~~~ 591 (657)
+|+|++.+..+|+++.+.|.+. ..|++++++++.+++.++..+|+..++..+++|++|+|+|.+++.+.+ +...++++
T Consensus 464 il~V~a~~~~t~~~~~~~i~~~-~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 541 (599)
T TIGR01991 464 LLTVSAQEQSTGVEQSIQVKPS-YGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEALQAALAA-DGDLLSED 541 (599)
T ss_pred eEEEEEEECCCCcEEEEecccc-cCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCHH
Confidence 9999999999999999988765 669999999999999999999999999999999999999999998865 56789999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006194 592 DKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVIKQVYEK 639 (657)
Q Consensus 592 e~~~i~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e~ 639 (657)
+|+++...+++.++||+++ +.+.++++.++|++.+.++..+.+.+
T Consensus 542 ~~~~~~~~l~~~~~~l~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~ 586 (599)
T TIGR01991 542 ERAAIDAAMEALQKALQGD---DADAIKAAIEALEEATDNFAARRMDR 586 (599)
T ss_pred HHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999976 67899999999999999999866654
No 13
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=2.5e-96 Score=816.53 Aligned_cols=582 Identities=41% Similarity=0.691 Sum_probs=537.3
Q ss_pred eEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEEcCCceeEcHHHHHHHhhcccchhhHhHHhhCCCCCCHHHH
Q 006194 33 TVIGIDLGTTYSCVGVYRNGRVEIIANDQGNRITPSWVAFTDTERLIGEAAKNQAALNAERTVFDVKRLIGRKFDDPEVQ 112 (657)
Q Consensus 33 ~viGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~~~ 112 (657)
.+||||||||||+||++.+|.+++++|..|++.+||+|+|.++.+++|..|+.+...+|.++++.+||++|+.+.+ +.
T Consensus 20 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d--~~ 97 (616)
T PRK05183 20 LAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLAD--IQ 97 (616)
T ss_pred eEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchh--hh
Confidence 6899999999999999999999999999999999999999988899999999999999999999999999998876 34
Q ss_pred hhhccCCeEEee-cCCceeEEEEEcCceeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHH
Q 006194 113 RDIKFLPYKIVN-KGGKPYIQVKVKGETKVFSPEEISAMILQKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKDAGI 191 (657)
Q Consensus 113 ~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa~ 191 (657)
.....+||.+.. .+|...+.+ .+ ..++|+++++++|+++++.|+.+++.++.++|||||++|++.||+++++||+
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~~~--~~--~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~ 173 (616)
T PRK05183 98 QRYPHLPYQFVASENGMPLIRT--AQ--GLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAAR 173 (616)
T ss_pred hhhhcCCeEEEecCCCceEEEe--cC--CeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 445678998876 466665554 33 4789999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHHHHH
Q 006194 192 IAGLNVARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFIKL 271 (657)
Q Consensus 192 ~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~ 271 (657)
+||++++++++||+|||++|++.... +++++|||+||||||+|++++.++.++++++.|+..+||.+||..|++|+.++
T Consensus 174 ~AGl~v~~li~EPtAAAlay~~~~~~-~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~~~~ 252 (616)
T PRK05183 174 LAGLNVLRLLNEPTAAAIAYGLDSGQ-EGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILEQ 252 (616)
T ss_pred HcCCCeEEEecchHHHHHHhhcccCC-CCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHHHHH
Confidence 99999999999999999999987653 77899999999999999999999999999999999999999999999998776
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHHHHHHHHccCCceeEEEEeeccCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 006194 272 IKKKYNKDISKDNKAIGKLRRECERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNMDLFKKTMGPVKKALEDA 351 (657)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~l~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~ 351 (657)
+ +.+...+++.+.+|+.+||++|+.||.+..+.+.++.+ ...|||++|+++|+|+++++..++.++|+++
T Consensus 253 ~----~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~------~~~itr~efe~l~~~l~~~~~~~i~~~L~~a 322 (616)
T PRK05183 253 A----GLSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW------QGEITREQFNALIAPLVKRTLLACRRALRDA 322 (616)
T ss_pred c----CCCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC------CCeEcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5 34444678899999999999999999999988888532 2249999999999999999999999999999
Q ss_pred CCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHHHhhhcCCCCCCCcceEEEeecccceeEE
Q 006194 352 GLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQGGILSGEGGDETKGILLLDVAPLSLGIE 431 (657)
Q Consensus 352 ~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~a~~~~~~~~~~~~~~~~~d~~~~~~gi~ 431 (657)
++++.+|+.|+||||+||+|+|++.|+++| +..+..+.||+++||+|||++|+.+++. +..+++.+.|++|+++|++
T Consensus 323 ~~~~~~i~~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeaVA~GAAi~a~~l~~~--~~~~~~~l~dv~p~slgi~ 399 (616)
T PRK05183 323 GVEADEVKEVVMVGGSTRVPLVREAVGEFF-GRTPLTSIDPDKVVAIGAAIQADILAGN--KPDSDMLLLDVIPLSLGLE 399 (616)
T ss_pred CCCcccCCEEEEECCcccChHHHHHHHHHh-ccCcCcCCCchHHHHHHHHHHHHHhccc--cccCceEEEeeccccccce
Confidence 999999999999999999999999999999 5666778999999999999999999876 3467899999999999999
Q ss_pred eeCCEEEEEEecCCCCCcceeeeeeeccCCCceeEEEEEecCCcccccCcceeeEEecCCCCCCCCCCeeEEEEEEcCCC
Q 006194 432 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQSTVTIKVYEGERSLTKDCRELGRFDLSGIPPAPRGVPQIEVTFEVDANG 511 (657)
Q Consensus 432 ~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~v~~g~~~~~~~~~~lg~~~l~~~~~~~~~~~~i~v~~~~d~~g 511 (657)
+.+|.+.++||+|+++|++++..|++..|+|+.+.|.||||++..+.+|..||+|.|.|+|+.|.|.++|+|+|++|.||
T Consensus 400 ~~~g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~~d~~G 479 (616)
T PRK05183 400 TMGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDADG 479 (616)
T ss_pred ecCCeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCccEEEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEecCCcceeEEEEeccCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHhhhhhcCCCHH
Q 006194 512 ILHVTAEDKGAKNKQSITIINDKGRLSQEEIDRMVKEAEEFAEEDKKVRERVDSRNKLETYIYNMRSTINDKLADKIDSD 591 (657)
Q Consensus 512 ~l~v~~~~~~~~~~~~~~i~~~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LE~~iy~~r~~l~~~~~~~~~~~ 591 (657)
+|+|++.+..+|++.++.|.+. ..||++++++++++++++...|+..+++.+++|++|+|+|.+++.+.+ ....++++
T Consensus 480 il~V~a~~~~~~~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~ 557 (616)
T PRK05183 480 LLSVTAMEKSTGVEASIQVKPS-YGLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERVLEALQAALAA-DGDLLSAA 557 (616)
T ss_pred eEEEEEEEcCCCcEEEeccccc-ccCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCHH
Confidence 9999999999999999998765 569999999999999999999999999999999999999999999965 45778999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006194 592 DKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVIKQVYEK 639 (657)
Q Consensus 592 e~~~i~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e~ 639 (657)
+|+++...++++++||..+ +.+.+++++++|++.++++..+.+++
T Consensus 558 ~~~~~~~~l~~~~~~l~~~---d~~~~~~~~~~l~~~~~~~~~~~~~~ 602 (616)
T PRK05183 558 ERAAIDAAMAALREVAQGD---DADAIEAAIKALDKATQEFAARRMDR 602 (616)
T ss_pred HHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999875 68899999999999999999876654
No 14
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-98 Score=758.19 Aligned_cols=605 Identities=55% Similarity=0.876 Sum_probs=576.0
Q ss_pred CeEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEEc-CCceeEcHHHHHHHhhcccchhhHhHHhhCCCCCCHH
Q 006194 32 GTVIGIDLGTTYSCVGVYRNGRVEIIANDQGNRITPSWVAFT-DTERLIGEAAKNQAALNAERTVFDVKRLIGRKFDDPE 110 (657)
Q Consensus 32 ~~viGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~-~~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~ 110 (657)
..++|||+|||||++|++.++.+.++.|..|.|.+||+|+|. ++++++|..|+.+...||.++++.-||++|+++.+++
T Consensus 27 ~~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d~e 106 (640)
T KOG0102|consen 27 GKVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDDPE 106 (640)
T ss_pred CceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccCHH
Confidence 469999999999999999999999999999999999999995 4599999999999999999999999999999999999
Q ss_pred HHhhhccCCeEEee-cCCceeEEEEEcCceeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHH
Q 006194 111 VQRDIKFLPYKIVN-KGGKPYIQVKVKGETKVFSPEEISAMILQKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKDA 189 (657)
Q Consensus 111 ~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~A 189 (657)
++++++..||+++. .+|...++. .| ..++|.++.+++|.+++++|+++++..+..+|+|||+||++.||+++++|
T Consensus 107 vq~~~k~vpyKiVk~~ngdaw~e~--~G--~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkda 182 (640)
T KOG0102|consen 107 VQKDIKQVPYKIVKASNGDAWVEA--RG--KQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDA 182 (640)
T ss_pred HHHHHHhCCcceEEccCCcEEEEe--CC--eEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHhh
Confidence 99999999999997 677766665 67 89999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHHH
Q 006194 190 GIIAGLNVARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFI 269 (657)
Q Consensus 190 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~ 269 (657)
.++||++++++++||+|||++|+++... ++.++|||+||||||+++..+.++.+++.++.+|.++||.+||..+.+|+.
T Consensus 183 g~iagl~vlrvineptaaalaygld~k~-~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~~~~v 261 (640)
T KOG0102|consen 183 GQIAGLNVLRVINEPTAAALAYGLDKKE-DGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVRFIV 261 (640)
T ss_pred hhhccceeeccCCccchhHHhhcccccC-CCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHHHHHH
Confidence 9999999999999999999999999887 889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHccCCceeEEEEeeccCC----ceeEEEecHHHHHHHHHHHHHHHHHHHH
Q 006194 270 KLIKKKYNKDISKDNKAIGKLRRECERAKRALSSQHQVRVEIESLFDG----VDFSEPLTRARFEELNMDLFKKTMGPVK 345 (657)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~l~~~----~~~~~~itr~~fe~~~~~~~~~~~~~i~ 345 (657)
..|+...++++..+.+++.||.+.+||+|.+||....+.+.++.+..+ ..+++.+||.+||+++.++++|.++++.
T Consensus 262 ~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~~ 341 (640)
T KOG0102|consen 262 SEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIEPCK 341 (640)
T ss_pred HhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhhHHH
Confidence 999999999999999999999999999999999999999999987665 6789999999999999999999999999
Q ss_pred HHHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHHHhhhcCCCCCCCcceEEEeecc
Q 006194 346 KALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQGGILSGEGGDETKGILLLDVAP 425 (657)
Q Consensus 346 ~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~a~~~~~~~~~~~~~~~~~d~~~ 425 (657)
++|+++++...||+.|+|+||.+|+|.+++.+++.| ++......|||++||.|||++++.+++. +++..+.|++|
T Consensus 342 ~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~f-gk~p~~~vnPdeava~GAaiqggvl~ge----VkdvlLLdVtp 416 (640)
T KOG0102|consen 342 KALRDASLSSSDINEVILVGGMTRMPKVQSTVKELF-GKGPSKGVNPDEAVAGGAAIQGGVLSGE----VKDVLLLDVTP 416 (640)
T ss_pred HHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHh-CCCCCCCcCCcchhccchhhccchhhcc----ccceeeeecch
Confidence 999999999999999999999999999999999999 7888999999999999999999999997 89999999999
Q ss_pred cceeEEeeCCEEEEEEecCCCCCcceeeeeeeccCCCceeEEEEEecCCcccccCcceeeEEecCCCCCCCCCCeeEEEE
Q 006194 426 LSLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQSTVTIKVYEGERSLTKDCRELGRFDLSGIPPAPRGVPQIEVTF 505 (657)
Q Consensus 426 ~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~v~~g~~~~~~~~~~lg~~~l~~~~~~~~~~~~i~v~~ 505 (657)
.++||++-+|.|..++++|+.||++++..|.+..|+|+.+.|.|+||++.+..+|..+|+|.+.|+||+|+|.++|+|+|
T Consensus 417 LsLgietlggvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpqieVtf 496 (640)
T KOG0102|consen 417 LSLGIETLGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQIEVTF 496 (640)
T ss_pred HHHHHHhhhhhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCcEEEEEEecCCcceeEEEEeccCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHhhhhh
Q 006194 506 EVDANGILHVTAEDKGAKNKQSITIINDKGRLSQEEIDRMVKEAEEFAEEDKKVRERVDSRNKLETYIYNMRSTINDKLA 585 (657)
Q Consensus 506 ~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LE~~iy~~r~~l~~~~~ 585 (657)
++|.||+++|++.++.+|+.+++++... +.||+.|++.+.++.+.+...|+.++++.+..|+.++++|.....+.+ +.
T Consensus 497 DIdanGI~~vsA~dk~t~K~qsi~i~~s-ggLs~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~~~-~~ 574 (640)
T KOG0102|consen 497 DIDANGIGTVSAKDKGTGKSQSITIASS-GGLSKDEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSLKE-FE 574 (640)
T ss_pred eecCCceeeeehhhcccCCccceEEeec-CCCCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhhhh-hh
Confidence 9999999999999999999999999887 669999999999999999999999999999999999999999998876 88
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 006194 586 DKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVIKQVYEKNGGSSSADS 648 (657)
Q Consensus 586 ~~~~~~e~~~i~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e~~~~~~~~~~ 648 (657)
+..+.++..+|+..+.++.+.+..-...+.++++.+...|++..-|++..++..+|..+.++.
T Consensus 575 ~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~k~~~~~l~q~~lkl~es~~k~~~~~~~~~~ 637 (640)
T KOG0102|consen 575 EKIPAEECEKLEEKISDLRELVANKDSGDMEEIKKAMSALQQASLKLFESAYKNMGAGGEGGS 637 (640)
T ss_pred hhCcHHHHHHHHHHHHHHHHHHhhhccCChhhHHHHHHHHHHhhhHHHHHHHhhhcccCCCCC
Confidence 889999999999999999998875323345899999999999999999999887766665444
No 15
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=3.8e-94 Score=813.32 Aligned_cols=597 Identities=50% Similarity=0.864 Sum_probs=552.6
Q ss_pred EEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEEcCCceeEcHHHHHHHhhcccchhhHhHHhhCCCCCCHHHHh
Q 006194 34 VIGIDLGTTYSCVGVYRNGRVEIIANDQGNRITPSWVAFTDTERLIGEAAKNQAALNAERTVFDVKRLIGRKFDDPEVQR 113 (657)
Q Consensus 34 viGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~~~~ 113 (657)
||||||||+||+||++++|.++++.|..|+|.+||+|+|.++++++|..|.....++|.++++++|+|+|+.++++.++.
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~~ 80 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQK 80 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccch
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCeEEee-cCCceeEEEEEcCceeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHH
Q 006194 114 DIKFLPYKIVN-KGGKPYIQVKVKGETKVFSPEEISAMILQKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKDAGII 192 (657)
Q Consensus 114 ~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa~~ 192 (657)
..+.+||.+.. .+|...+.+.+.|....++|+++++++|+++++.++.+++..+.++|||||++|++.||+++++||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~~ 160 (602)
T PF00012_consen 81 EKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAEL 160 (602)
T ss_dssp HHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHHH
T ss_pred hhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhcccccccc
Confidence 99999999987 58899999998887789999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHHHHHH
Q 006194 193 AGLNVARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFIKLI 272 (657)
Q Consensus 193 AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~ 272 (657)
||++++++++||+|||++|++.....++++||||+||||+|++++++.++.++++++.++..+||.+||.+|++|+.++|
T Consensus 161 agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~~ 240 (602)
T PF00012_consen 161 AGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLEKF 240 (602)
T ss_dssp TT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHH
T ss_pred cccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccccccccccccccceecceeeccccccc
Confidence 99999999999999999999887666889999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCHHHHHHHHHHHHHHHHHccC--CceeEEEEeeccC-CceeEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Q 006194 273 KKKYNKDISKDNKAIGKLRRECERAKRALSS--QHQVRVEIESLFD-GVDFSEPLTRARFEELNMDLFKKTMGPVKKALE 349 (657)
Q Consensus 273 ~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~--~~~~~~~i~~l~~-~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~ 349 (657)
+.+++.++..+++.+.+|+.+||++|+.||. +.+..+.++.+.+ |.++.+.|||++|+++++|+++++..+|.++|+
T Consensus 241 ~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~ 320 (602)
T PF00012_consen 241 KKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLLERIIEPIEKALK 320 (602)
T ss_dssp HHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccceecccccccccccccccccccc
Confidence 9999988888999999999999999999999 6777788888887 889999999999999999999999999999999
Q ss_pred HcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHHHhhhcCCCCCCCcceEEEeeccccee
Q 006194 350 DAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQGGILSGEGGDETKGILLLDVAPLSLG 429 (657)
Q Consensus 350 ~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~a~~~~~~~~~~~~~~~~~d~~~~~~g 429 (657)
.++.+..+|+.|+|+||+||+|+|++.|++.|+ ..+..++||++|||+|||++|+.+++. ++.+++.+.|++|++||
T Consensus 321 ~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~-~~~~~~~~p~~aVA~GAa~~a~~~~~~--~~~~~~~~~d~~~~~~~ 397 (602)
T PF00012_consen 321 DAGLKKEDIDSVLLVGGSSRIPYVQEALKELFG-KKISKSVNPDEAVARGAALYAAILSGS--FRVKDIKIIDVTPFSIG 397 (602)
T ss_dssp HTT--GGGESEEEEESGGGGSHHHHHHHHHHTT-SEEB-SS-TTTHHHHHHHHHHHHHHTS--CSSTSSCESEBESSEEE
T ss_pred cccccccccceeEEecCcccchhhhhhhhhccc-cccccccccccccccccccchhhhccc--ccccccccccccccccc
Confidence 999999999999999999999999999999995 778888999999999999999999986 56788999999999999
Q ss_pred EEeeCCEEEEEEecCCCCCcceeeeeeeccCCCceeEEEEEecCCcccccCcceeeEEecCCCCCCCCCCeeEEEEEEcC
Q 006194 430 IETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQSTVTIKVYEGERSLTKDCRELGRFDLSGIPPAPRGVPQIEVTFEVDA 509 (657)
Q Consensus 430 i~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~v~~g~~~~~~~~~~lg~~~l~~~~~~~~~~~~i~v~~~~d~ 509 (657)
++..++.+.+++++|+++|...+..|.+..++|+.+.+.+|+|+.....+|..||++.+.++++.++|.++|+++|++|.
T Consensus 398 i~~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~f~ld~ 477 (602)
T PF00012_consen 398 IEVSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPKGKPKIKVTFELDE 477 (602)
T ss_dssp EEETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSSTTSSEEEEEEEEET
T ss_pred ccccccccccccccccccccccccccchhccccccccceeeeccccccccccccccccccccccccccccceeeEEeeee
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred CCcEEEEEEecCCcceeEEEEeccCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHhhhhhcCCC
Q 006194 510 NGILHVTAEDKGAKNKQSITIINDKGRLSQEEIDRMVKEAEEFAEEDKKVRERVDSRNKLETYIYNMRSTINDKLADKID 589 (657)
Q Consensus 510 ~g~l~v~~~~~~~~~~~~~~i~~~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LE~~iy~~r~~l~~~~~~~~~ 589 (657)
+|+|+|++.+..++....+++..... ++++++++++++++++...|+..++..+++|+||+++|++|+.+++. .+.++
T Consensus 478 ~Gil~V~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~~-~~~~~ 555 (602)
T PF00012_consen 478 NGILSVEAAEVETGKEEEVTVKKKET-LSKEEIEELKKKLEEMDEEDEERRERAEAKNELESYIYELRDKLEED-KDFVS 555 (602)
T ss_dssp TSEEEEEEEETTTTEEEEEEEESSSS-SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-GGGST
T ss_pred eeehhhhhcccccccccccccccccc-cccccccccccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHHhh-hccCC
Confidence 99999999999999888888887744 99999999999999999999999999999999999999999999874 67787
Q ss_pred HHHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 006194 590 SDDKERIESTLKEALEWLDDN-QNAEKDDFDEKMKEVEAVCNPVIKQVYE 638 (657)
Q Consensus 590 ~~e~~~i~~~l~~~~~WL~~~-~~a~~~~~~~kl~~L~~~~~~i~~r~~e 638 (657)
++++ .+.+++..+||+++ .+++.++|++|+++|++..+||..|+++
T Consensus 556 ~~~~---~~~l~~~~~wl~~~~~~~~~~e~~~kl~~L~~~~~~i~~r~~~ 602 (602)
T PF00012_consen 556 EEEK---KKKLKETSDWLEDNGEDADKEEYKEKLEELKKVIEPIKKRYMQ 602 (602)
T ss_dssp HHHH---HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHH---HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7776 78899999999998 5778999999999999999999999874
No 16
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=3.8e-93 Score=783.31 Aligned_cols=553 Identities=35% Similarity=0.537 Sum_probs=494.0
Q ss_pred CCeEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEEcCCceeEcHHHHHHHhhcccchhhHhHHhhCCCCCCH-
Q 006194 31 LGTVIGIDLGTTYSCVGVYRNGRVEIIANDQGNRITPSWVAFTDTERLIGEAAKNQAALNAERTVFDVKRLIGRKFDDP- 109 (657)
Q Consensus 31 ~~~viGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~- 109 (657)
|..+||||||||||+||++.+|.++++.|..|++.+||+|+|.++.+++|..| +++++||++|+++++.
T Consensus 18 ~~~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~~~~ 87 (595)
T PRK01433 18 RQIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLKEIL 87 (595)
T ss_pred CceEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCchhhc
Confidence 45799999999999999999999999999999999999999998889999987 7999999999987652
Q ss_pred ---HHHhhhccCCeEEeecCCceeEEEEEcCceeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHH
Q 006194 110 ---EVQRDIKFLPYKIVNKGGKPYIQVKVKGETKVFSPEEISAMILQKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQAT 186 (657)
Q Consensus 110 ---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l 186 (657)
.+....+. ... .+...+.+.+.+ ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++
T Consensus 88 ~~~~~~~~~k~----~~~-~~~~~~~~~~~~--~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~ 160 (595)
T PRK01433 88 NTPALFSLVKD----YLD-VNSSELKLNFAN--KQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEV 160 (595)
T ss_pred cchhhHhhhhh----eee-cCCCeeEEEECC--EEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHH
Confidence 22221111 111 122234455566 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHH
Q 006194 187 KDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMD 266 (657)
Q Consensus 187 ~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 266 (657)
++||++||++++++++||+|||++|+..... ...+||||+||||||+|++++.++.++++++.|+..+||.+||.+|++
T Consensus 161 ~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~-~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~ 239 (595)
T PRK01433 161 MLAAKIAGFEVLRLIAEPTAAAYAYGLNKNQ-KGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQ 239 (595)
T ss_pred HHHHHHcCCCEEEEecCcHHHHHHHhcccCC-CCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHH
Confidence 9999999999999999999999999987643 568999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHccCCceeEEEEeeccCCceeEEEecHHHHHHHHHHHHHHHHHHHHH
Q 006194 267 YFIKLIKKKYNKDISKDNKAIGKLRRECERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNMDLFKKTMGPVKK 346 (657)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~l~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~ 346 (657)
|+.++|.. ..+.+ .++.||++|+.||.+..... ..++|||++|+++|+|+++++..++++
T Consensus 240 ~~~~~~~~------~~~~~----~~~~~ekaK~~LS~~~~~~~----------~~~~itr~efe~l~~~l~~~~~~~i~~ 299 (595)
T PRK01433 240 YLCNKFDL------PNSID----TLQLAKKAKETLTYKDSFNN----------DNISINKQTLEQLILPLVERTINIAQE 299 (595)
T ss_pred HHHHhcCC------CCCHH----HHHHHHHHHHhcCCCccccc----------ceEEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 98877632 12222 23469999999998765321 178899999999999999999999999
Q ss_pred HHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHHHhhhcCCCCCCCcceEEEeeccc
Q 006194 347 ALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQGGILSGEGGDETKGILLLDVAPL 426 (657)
Q Consensus 347 ~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~a~~~~~~~~~~~~~~~~~d~~~~ 426 (657)
+|+.++ ..+|+.|+||||+||+|+|++.|++.| +.++..+.||+++||+|||++|+.+++. ..++.+.|++|+
T Consensus 300 ~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~a~~l~~~----~~~~~l~Dv~p~ 372 (595)
T PRK01433 300 CLEQAG--NPNIDGVILVGGATRIPLIKDELYKAF-KVDILSDIDPDKAVVWGAALQAENLIAP----HTNSLLIDVVPL 372 (595)
T ss_pred HHhhcC--cccCcEEEEECCcccChhHHHHHHHHh-CCCceecCCchHHHHHHHHHHHHHhhCC----ccceEEEEeccc
Confidence 999998 568999999999999999999999999 6778888999999999999999999865 457899999999
Q ss_pred ceeEEeeCCEEEEEEecCCCCCcceeeeeeeccCCCceeEEEEEecCCcccccCcceeeEEecCCCCCCCCCCeeEEEEE
Q 006194 427 SLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQSTVTIKVYEGERSLTKDCRELGRFDLSGIPPAPRGVPQIEVTFE 506 (657)
Q Consensus 427 ~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~v~~g~~~~~~~~~~lg~~~l~~~~~~~~~~~~i~v~~~ 506 (657)
++|+++.+|.+.++|+||+++|+++++.|++..|+|+.+.|.||||++..+.+|..||+|.|+|+|+.|.|.++|+|+|+
T Consensus 373 slgi~~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~vtf~ 452 (595)
T PRK01433 373 SLGMELYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFA 452 (595)
T ss_pred ceEEEecCCEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCccEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCcEEEEEEecCCcceeEEEEeccCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHhhhhhc
Q 006194 507 VDANGILHVTAEDKGAKNKQSITIINDKGRLSQEEIDRMVKEAEEFAEEDKKVRERVDSRNKLETYIYNMRSTINDKLAD 586 (657)
Q Consensus 507 ~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LE~~iy~~r~~l~~~~~~ 586 (657)
+|.||+|+|++.+..||++.++.|..+ ..||++|+++++++++++...|...++..+++|++|++++.+++.+++ +..
T Consensus 453 id~~Gil~V~a~~~~t~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 530 (595)
T PRK01433 453 IDADGILSVSAYEKISNTSHAIEVKPN-HGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAIAE-LTT 530 (595)
T ss_pred ECCCCcEEEEEEEcCCCcEEEEEecCC-CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhc
Confidence 999999999999999999999999765 569999999999999999999999999999999999999999999976 667
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 006194 587 KIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVI 633 (657)
Q Consensus 587 ~~~~~e~~~i~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~~i~ 633 (657)
.+++++|+.+.+.+++.++||..+ +...+++++++|++.+.+..
T Consensus 531 ~l~~~~~~~i~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~ 574 (595)
T PRK01433 531 LLSESEISIINSLLDNIKEAVHAR---DIILINNSIKEFKSKIKKSM 574 (595)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999865 56677777777777777733
No 17
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-92 Score=730.24 Aligned_cols=595 Identities=37% Similarity=0.617 Sum_probs=551.3
Q ss_pred EEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEEcCCceeEcHHHHHHHhhcccchhhHhHHhhCCCCCCHHHHh
Q 006194 34 VIGIDLGTTYSCVGVYRNGRVEIIANDQGNRITPSWVAFTDTERLIGEAAKNQAALNAERTVFDVKRLIGRKFDDPEVQR 113 (657)
Q Consensus 34 viGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~~~~ 113 (657)
++|||||..+|.+|+++.+.+++|.|+.++|.+|++|+|.++.|++|.+|..+...|+.+++..+||++|+.+++|.+++
T Consensus 3 vvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~q~ 82 (727)
T KOG0103|consen 3 VVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEVQR 82 (727)
T ss_pred ceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChHhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCeEEee-cCCceeEEEEEcCceeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHH
Q 006194 114 DIKFLPYKIVN-KGGKPYIQVKVKGETKVFSPEEISAMILQKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKDAGII 192 (657)
Q Consensus 114 ~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa~~ 192 (657)
..+++|++++. .+|...+.+.+.|+.+.+++++|++|+|.+++..|++.+..++.+|||+||+||++.||+++.+||++
T Consensus 83 ~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA~i 162 (727)
T KOG0103|consen 83 EIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAARI 162 (727)
T ss_pred cccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHHhh
Confidence 99999999997 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeecchhHHHHHHhccccCC------CcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHH
Q 006194 193 AGLNVARIINEPTAAAIAYGLDKKG------GEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMD 266 (657)
Q Consensus 193 AGl~~~~li~Ep~Aaal~y~~~~~~------~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 266 (657)
|||+++++++|.+|+|++||+.+.+ ++.+++++|+|++++.+|++.|+.|.+.++++.+|..+||++||+.|.+
T Consensus 163 agLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L~~ 242 (727)
T KOG0103|consen 163 AGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEALID 242 (727)
T ss_pred cCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHHHH
Confidence 9999999999999999999998765 4678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHccCCceeEEEEeeccCCceeEEEecHHHHHHHHHHHHHHHHHHHHH
Q 006194 267 YFIKLIKKKYNKDISKDNKAIGKLRRECERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNMDLFKKTMGPVKK 346 (657)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~l~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~ 346 (657)
|++++|+.+|++++..++++..||+..|||+|+.||++.....+|++++++.|++..|+|++||++|.|+++++..++.+
T Consensus 243 hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p~~~ 322 (727)
T KOG0103|consen 243 HFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVPLLK 322 (727)
T ss_pred HHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHHHhhhcCCCCCCCcceEEEeeccc
Q 006194 347 ALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQGGILSGEGGDETKGILLLDVAPL 426 (657)
Q Consensus 347 ~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~a~~~~~~~~~~~~~~~~~d~~~~ 426 (657)
+|++++++..||+.|.+|||+||+|.|++.|+++| ++.+.+++|.++|||+|||+++|++|+. ++++++-+.|+.|+
T Consensus 323 ~l~d~~l~~edi~~VEiVGg~sripaike~Is~~F-gke~s~TlN~dEavarG~ALqcAIlSP~--frVRef~v~Di~py 399 (727)
T KOG0103|consen 323 ALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFF-GKELSRTLNQDEAVARGAALQCAILSPT--FRVREFSVEDIVPY 399 (727)
T ss_pred HHHHhcCccccceeEEEecCcccchHHHHHHHHHh-CCcccccccHHHHHHHhHHHHHHhcCcc--ccceecceecccce
Confidence 99999999999999999999999999999999999 8999999999999999999999999998 78999999999999
Q ss_pred ceeEEee----C-CEEEEEEecCCCCCcceeeeeeeccCCCceeEEEEEecC-CcccccCcceeeEEecCCCCCCCC-CC
Q 006194 427 SLGIETV----G-GVMTKLIPRNTVIPTKKSQVFTTYQDQQSTVTIKVYEGE-RSLTKDCRELGRFDLSGIPPAPRG-VP 499 (657)
Q Consensus 427 ~~gi~~~----~-~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~v~~g~-~~~~~~~~~lg~~~l~~~~~~~~~-~~ 499 (657)
++.+.+. + +....+||+|.++|.++..+|....+ |.+.++++. ...+.....|++|++.++.+...| ..
T Consensus 400 sIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~~----F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~~ge~s 475 (727)
T KOG0103|consen 400 SISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKGP----FTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDGEFS 475 (727)
T ss_pred eEEEEeccccccCCCceeeecCCCCCCCceEEEEEecCc----eEEEEEeccccccCCCCCceeeEEecccccCcccccc
Confidence 9998864 2 45578999999999999999988654 677777765 455545678999999998887774 45
Q ss_pred eeEEEEEEcCCCcEEEEEEec----------------------------CCcc----eeEEEEecc-CCCCCHHHHHHHH
Q 006194 500 QIEVTFEVDANGILHVTAEDK----------------------------GAKN----KQSITIIND-KGRLSQEEIDRMV 546 (657)
Q Consensus 500 ~i~v~~~~d~~g~l~v~~~~~----------------------------~~~~----~~~~~i~~~-~~~ls~~e~~~~~ 546 (657)
+++|...++.+|+.++...-. ..++ ...+.+... .+.|+..+++..+
T Consensus 476 kVKvkvr~n~~Gi~~i~sA~~~e~~~veev~~~~~e~~~~~~~~~~~~~~~~k~kvk~~~L~~~~~~~~~l~~~~l~~~~ 555 (727)
T KOG0103|consen 476 KVKVKVRLNEHGIDTIESATLIEDIEVEEVPEEPMEYDDAAKMLERIAPAENKKKVKKVDLPIEAYTKGALITDELELYI 555 (727)
T ss_pred ceeEEEEEcCccceeeecceeecccchhccccchhhhhcchhhhhhhccccccceeeeccccceeeeccccCHHHHHHHH
Confidence 899999999999999864210 0011 112233332 2479999999999
Q ss_pred HHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH
Q 006194 547 KEAEEFAEEDKKVRERVDSRNKLETYIYNMRSTINDKLADKIDSDDKERIESTLKEALEWLDDN-QNAEKDDFDEKMKEV 625 (657)
Q Consensus 547 ~~~~~~~~~D~~~~~~~ea~N~LE~~iy~~r~~l~~~~~~~~~~~e~~~i~~~l~~~~~WL~~~-~~a~~~~~~~kl~~L 625 (657)
+++.+|..+|+...++.+++|.||+|+|++|++|.+.|.++.+++++++|...|+++++|||++ ++.++..|..|+.+|
T Consensus 556 e~E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~~~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y~~kl~el 635 (727)
T KOG0103|consen 556 EKENKMILQDKLEKETVDAKNALEEYVYDMRDKLSDKYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVYVAKLEEL 635 (727)
T ss_pred HHHHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhhhhhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999988999999999999999999999999998 789999999999999
Q ss_pred HHHHHHHHHHHH
Q 006194 626 EAVCNPVIKQVY 637 (657)
Q Consensus 626 ~~~~~~i~~r~~ 637 (657)
+.+.+ ..|+.
T Consensus 636 k~~g~--~~r~~ 645 (727)
T KOG0103|consen 636 KKLGD--KKRFD 645 (727)
T ss_pred Hhhhh--hhhhh
Confidence 99996 44443
No 18
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-90 Score=756.86 Aligned_cols=572 Identities=56% Similarity=0.881 Sum_probs=543.0
Q ss_pred CeEEEEEcCccceEEEEEECC-eEEEEecCCCCcccceEEEEcCC-ceeEcHHHHHHHhhcccchhhHhHHhhCCCCCCH
Q 006194 32 GTVIGIDLGTTYSCVGVYRNG-RVEIIANDQGNRITPSWVAFTDT-ERLIGEAAKNQAALNAERTVFDVKRLIGRKFDDP 109 (657)
Q Consensus 32 ~~viGIDlGTt~s~va~~~~g-~~~ii~~~~g~~~~Ps~v~~~~~-~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~ 109 (657)
+.+||||||||||+||+++++ .+.++.|..|.|.+||+|+|..+ ++++|..|+.+...+|.++++.+||++|+...
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~-- 82 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN-- 82 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC--
Confidence 478999999999999999988 79999999999999999999976 59999999999999999999999999998611
Q ss_pred HHHhhhccCCeEEeecCCceeEEEEEcCceeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHH
Q 006194 110 EVQRDIKFLPYKIVNKGGKPYIQVKVKGETKVFSPEEISAMILQKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKDA 189 (657)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~A 189 (657)
...+.+.+.| +.++|+++++++|+++++.|+.+++..+.++|||||+||++.||+++++|
T Consensus 83 ------------------~~~~~~~~~~--~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A 142 (579)
T COG0443 83 ------------------GLKISVEVDG--KKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDA 142 (579)
T ss_pred ------------------CCcceeeeCC--eeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHH
Confidence 1112344566 78999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHHH
Q 006194 190 GIIAGLNVARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFI 269 (657)
Q Consensus 190 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~ 269 (657)
+++|||+++++++||+|||++|+++.. .+..|+|||+||||||+|++++..+.++++++.++.++||++||.+|.+|+.
T Consensus 143 ~~iaGl~vlrlinEPtAAAlayg~~~~-~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~ 221 (579)
T COG0443 143 ARIAGLNVLRLINEPTAAALAYGLDKG-KEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLV 221 (579)
T ss_pred HHHcCCCeEEEecchHHHHHHhHhccC-CCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHH
Confidence 999999999999999999999999987 4889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHccCCceeEEEEeeccCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Q 006194 270 KLIKKKYNKDISKDNKAIGKLRRECERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNMDLFKKTMGPVKKALE 349 (657)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~l~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~ 349 (657)
++|+.+++.++..++..+.||+..||++|+.||...++.+.++.+..+.++...|||++||+++.+++.++..++.++++
T Consensus 222 ~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~~~al~ 301 (579)
T COG0443 222 MEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPVEQALK 301 (579)
T ss_pred HHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988877778999999999999999999999999999999
Q ss_pred HcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHHHhhhcCCCCCCCcceEEEeeccccee
Q 006194 350 DAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQGGILSGEGGDETKGILLLDVAPLSLG 429 (657)
Q Consensus 350 ~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~a~~~~~~~~~~~~~~~~~d~~~~~~g 429 (657)
.++++..+|+.|+|+||++|+|.|++.+++.| ++++...+||+++||.|||++|+.+++. ..++.+.|++|+++|
T Consensus 302 ~a~l~~~~I~~VilvGGstriP~V~~~v~~~f-~~~~~~~inpdeava~GAa~qa~~l~~~----~~d~ll~Dv~plslg 376 (579)
T COG0443 302 DAGLEKSDIDLVILVGGSTRIPAVQELVKEFF-GKEPEKSINPDEAVALGAAIQAAVLSGE----VPDVLLLDVIPLSLG 376 (579)
T ss_pred HcCCChhhCceEEEccceeccHHHHHHHHHHh-CccccccCCccHHHHHHHHHHHHhhcCc----ccCceEEeeeeeccc
Confidence 99999999999999999999999999999999 5889999999999999999999999987 348999999999999
Q ss_pred EEeeCCEEEEEEecCCCCCcceeeeeeeccCCCceeEEEEEecCCcccccCcceeeEEecCCCCCCCCCCeeEEEEEEcC
Q 006194 430 IETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQSTVTIKVYEGERSLTKDCRELGRFDLSGIPPAPRGVPQIEVTFEVDA 509 (657)
Q Consensus 430 i~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~v~~g~~~~~~~~~~lg~~~l~~~~~~~~~~~~i~v~~~~d~ 509 (657)
++..++.+..++++|+.+|.++...|++..|+|+.+.+++++|++....+|..+|.|.+.++|+.|.|.++|+++|.+|.
T Consensus 377 ie~~~~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~f~iD~ 456 (579)
T COG0443 377 IETLGGVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDA 456 (579)
T ss_pred cccCcchhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCceEEEeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEecCCcceeEEEEeccCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHhhhhhcCCC
Q 006194 510 NGILHVTAEDKGAKNKQSITIINDKGRLSQEEIDRMVKEAEEFAEEDKKVRERVDSRNKLETYIYNMRSTINDKLADKID 589 (657)
Q Consensus 510 ~g~l~v~~~~~~~~~~~~~~i~~~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LE~~iy~~r~~l~~~~~~~~~ 589 (657)
||++.|++.+..+|+..+++|..... |++++++.+.+.+..+.+.|+..++..+.+|+.+.+++.++..|.+ .. .++
T Consensus 457 ~gi~~v~a~~~~~~k~~~i~i~~~~~-ls~~~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~ 533 (579)
T COG0443 457 NGILNVTAKDLGTGKEQSITIKASSG-LSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALKE-IV-KVS 533 (579)
T ss_pred CcceEeeeecccCCceEEEEEecCCC-CCHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHhh-hc-cCC
Confidence 99999999999999999999999866 9999999999999999999999999999999999999999999977 34 899
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 006194 590 SDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVIKQVYE 638 (657)
Q Consensus 590 ~~e~~~i~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e 638 (657)
+++++++.+.+.++++||+.. .++++.+.++|+...+++..++++
T Consensus 534 ~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~l~~~~~~~~~~~~~ 578 (579)
T COG0443 534 EEEKEKIEEAITDLEEALEGE----KEEIKAKIEELQEVTQKLAEKKYQ 578 (579)
T ss_pred HHHHHHHHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999982 889999999999999999988775
No 19
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-85 Score=680.13 Aligned_cols=617 Identities=30% Similarity=0.496 Sum_probs=541.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEEcCccceEEEEEECC-eEEEEecCCCCcccceEEEEcCCceeEcHHH
Q 006194 5 NKALAILLLFAFEFSLALAAADDATKLGTVIGIDLGTTYSCVGVYRNG-RVEIIANDQGNRITPSWVAFTDTERLIGEAA 83 (657)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viGIDlGTt~s~va~~~~g-~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A 83 (657)
+++|+++|++.++++++... .+++||+||.+++||++++| .++|+.|..++|++|++|+|.+++|+||++|
T Consensus 3 ~~~llv~l~~~~~~~~~~~~--------AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A 74 (902)
T KOG0104|consen 3 GRVLLVILLLCLFVALSSAL--------AVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAA 74 (902)
T ss_pred chhHHHHHHHHHHhcccchh--------hheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhh
Confidence 34555555555555444433 68999999999999999999 4889999999999999999999999999999
Q ss_pred HHHHhhcccchhhHhHHhhCCCCCCHHHHhhhccCCeEEee-cCCceeEEEEEcCceeEeCHHHHHHHHHHHHHHHHHHH
Q 006194 84 KNQAALNAERTVFDVKRLIGRKFDDPEVQRDIKFLPYKIVN-KGGKPYIQVKVKGETKVFSPEEISAMILQKMKETAEAY 162 (657)
Q Consensus 84 ~~~~~~~p~~~~~~~k~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~ 162 (657)
.....++|++++.+++.++|+...+|.+..+.+++|+.-.. ...+..+.+.+++ ...|++|++++|+|.+.++.|+.+
T Consensus 75 ~~ma~r~P~~~~~~l~~llgk~~~~~~v~ly~~~~p~~e~v~d~~rstV~F~i~d-~~~ysvEellAMil~~a~~~ae~~ 153 (902)
T KOG0104|consen 75 ASMATRFPQSTYRQLKDLLGKSLDDPTVDLYQKRFPFFELVEDPQRSTVVFKISD-QEEYSVEELLAMILQYAKSLAEEY 153 (902)
T ss_pred hhhhhcCcHHHHHHHHHHhCcccCCcHHHHHHhcCCceeecccCccceEEEEeCC-ccccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888876554 4467888888777 478999999999999999999999
Q ss_pred hCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeecchhHHHHHHhccccCC----CcceEEEEEecCCeeEEEEEE
Q 006194 163 LGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKG----GEMNILVYDLGGGTFDVSILT 238 (657)
Q Consensus 163 ~~~~~~~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~----~~~~vlv~D~Gggt~dvsv~~ 238 (657)
...+|+++|||||.||++.||+++.+||++||++++.||+|.+|+|+.|++.+.. .+++++|||||+|++.++++.
T Consensus 154 a~~~Ikd~ViTVP~~F~qaeR~all~Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativs 233 (902)
T KOG0104|consen 154 AKQPIKDMVITVPPFFNQAERRALLQAAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVS 233 (902)
T ss_pred HhcchhheEEeCCcccCHHHHHHHHHHHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEE
Confidence 9999999999999999999999999999999999999999999999999999743 788999999999999999999
Q ss_pred Ee----------CCeEEEEEEeCCCCCccchhhHHHHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHHHHHHHHccCCce
Q 006194 239 ID----------NGVFEVLATSGDTHLGGEDFDHRVMDYFIKLIKKKYNK--DISKDNKAIGKLRRECERAKRALSSQHQ 306 (657)
Q Consensus 239 ~~----------~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~--~~~~~~~~~~~L~~~~e~~K~~Ls~~~~ 306 (657)
+. ...+++++..+|..|||..|+.+|.+|+.+.|.++++. +++.++|++.+|.++|+++|..||+|.+
T Consensus 234 y~~v~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANse 313 (902)
T KOG0104|consen 234 YQLVKTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSE 313 (902)
T ss_pred EEeeccccccCccceEEEEeeccCCccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchh
Confidence 85 14789999999999999999999999999999988764 5778999999999999999999999999
Q ss_pred eEEEEeeccCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCC
Q 006194 307 VRVEIESLFDGVDFSEPLTRARFEELNMDLFKKTMGPVKKALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEP 386 (657)
Q Consensus 307 ~~~~i~~l~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v 386 (657)
+.++|+.+.++.|+..+|||++||++|+++..++..+|+++|..++++.++|+.|+|.||+||+|.||+.|.+..+..++
T Consensus 314 a~aqIEsL~ddiDFr~kvTRe~fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei 393 (902)
T KOG0104|consen 314 AFAQIESLIDDIDFRLKVTREEFEELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEEL 393 (902)
T ss_pred hHHHHHHHhhccccccceeHHHHHHHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred CCCCCchhhhHhHHHHHHhhhcCCCCCCCcceEEEeecccceeEEeeCC--------EEEEEEecCCCCCcceeeeeeec
Q 006194 387 SKGINPDEAVAHGAAVQGGILSGEGGDETKGILLLDVAPLSLGIETVGG--------VMTKLIPRNTVIPTKKSQVFTTY 458 (657)
Q Consensus 387 ~~~~~~~~ava~GAa~~a~~~~~~~~~~~~~~~~~d~~~~~~gi~~~~~--------~~~~ii~~~~~ip~~~~~~~~~~ 458 (657)
...+|.|||+++||+++||.||.. |+++++.+.|.++|+|-++..+. ....+|+++.++|..+.++|+.+
T Consensus 394 ~knlNaDEA~vmGav~~aA~LSks--FKvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~y 471 (902)
T KOG0104|consen 394 GKNLNADEAAVMGAVYQAAHLSKS--FKVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSY 471 (902)
T ss_pred hcccChhHHHHHHHHHHHHhhccc--ccccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeecccc
Confidence 999999999999999999999987 88999999999999888875432 23458999999999998888877
Q ss_pred cCCCceeEEEEEecCCcccccCcceeeEEecCCCCCCC-------CCCeeEEEEEEcCCCcEEEEEEecC----------
Q 006194 459 QDQQSTVTIKVYEGERSLTKDCRELGRFDLSGIPPAPR-------GVPQIEVTFEVDANGILHVTAEDKG---------- 521 (657)
Q Consensus 459 ~d~q~~~~i~v~~g~~~~~~~~~~lg~~~l~~~~~~~~-------~~~~i~v~~~~d~~g~l~v~~~~~~---------- 521 (657)
.|+ +.+.+-.|.-. ..+-++++.|+...-+ ....|.++|.+|..|++.|+..+..
T Consensus 472 sdd---f~~~~n~~~~~-----~nl~~velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~ 543 (902)
T KOG0104|consen 472 SDD---FPFNINYGDLG-----QNLTTVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSG 543 (902)
T ss_pred CCc---cccccchhhhc-----cCccEEEEecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCCcccc
Confidence 664 44443322211 2344788887765321 1346999999999999998742200
Q ss_pred -----------C-----------------------cc--e------------------------------------eEEE
Q 006194 522 -----------A-----------------------KN--K------------------------------------QSIT 529 (657)
Q Consensus 522 -----------~-----------------------~~--~------------------------------------~~~~ 529 (657)
+ ++ . ..+.
T Consensus 544 ~~~st~~K~~~~~e~e~~~~~~~~~e~ae~k~~ep~e~se~~ee~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~~~~~ 623 (902)
T KOG0104|consen 544 DKKSTLSKLGSTSEGEETSDDSVQEEDAEEKGLEPSERSELEEEAEEDASQEDKTEKETSEAQKPTEKKETPAPMVVRLQ 623 (902)
T ss_pred hhhhhhhccccccccccccccccchhhhhhhccCccccccccccccccccccccccccchhccCcchhhcccCcceeEee
Confidence 0 00 0 0134
Q ss_pred Eecc---CCCCCHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHhhh-hhcCCCHHHHHHHHHHHHHHHH
Q 006194 530 IIND---KGRLSQEEIDRMVKEAEEFAEEDKKVRERVDSRNKLETYIYNMRSTINDK-LADKIDSDDKERIESTLKEALE 605 (657)
Q Consensus 530 i~~~---~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LE~~iy~~r~~l~~~-~~~~~~~~e~~~i~~~l~~~~~ 605 (657)
|... ...|+...++....+++.+.++|+.+.+++++.|+||.|+|++.+++.++ |..+.+++|++.|.+.+..+.+
T Consensus 624 i~~~~~~~~~l~~~~~~~~~~kl~d~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~~ 703 (902)
T KOG0104|consen 624 IQETYPDLPVLNENALDAAVAKLEDFVQKEKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLMD 703 (902)
T ss_pred eeeecccccCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHHHHH
Confidence 4433 24689999999999999999999999999999999999999999999876 9999999999999999999999
Q ss_pred HHhcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006194 606 WLDDN-QNAEKDDFDEKMKEVEAVCNPVIKQVYEKN 640 (657)
Q Consensus 606 WL~~~-~~a~~~~~~~kl~~L~~~~~~i~~r~~e~~ 640 (657)
||+++ .+..+++|.+++.+|++++..+..|..++.
T Consensus 704 Wleed~~~~~t~~~~ek~a~L~~l~~~~~~R~ee~k 739 (902)
T KOG0104|consen 704 WLEEDGSQTPTEMLTEKLAELKKLETSKNFREEERK 739 (902)
T ss_pred HHHhhccccchhHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 99998 678899999999999999999999988764
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=1.8e-54 Score=460.72 Aligned_cols=337 Identities=28% Similarity=0.381 Sum_probs=288.3
Q ss_pred EEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEEc----------------------------------------
Q 006194 34 VIGIDLGTTYSCVGVYRNGRVEIIANDQGNRITPSWVAFT---------------------------------------- 73 (657)
Q Consensus 34 viGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~---------------------------------------- 73 (657)
++|||||||||+||++++|+++++++..|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 5899999999999999999999999999999999999994
Q ss_pred -CCceeEcHHHHHHHhhcccch--hhHhHHhhCCCCCCHHHHhhhccCCeEEeecCCceeEEEEEcCceeEeCHHHHHHH
Q 006194 74 -DTERLIGEAAKNQAALNAERT--VFDVKRLIGRKFDDPEVQRDIKFLPYKIVNKGGKPYIQVKVKGETKVFSPEEISAM 150 (657)
Q Consensus 74 -~~~~~~G~~A~~~~~~~p~~~--~~~~k~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~ 150 (657)
++..++|..|..+...+|..+ +..+|++||...-.+ + ....+++++++
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~---------------------------~--~~~~~e~l~a~ 132 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKP---------------------------Q--QVALFEDLVCA 132 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCc---------------------------c--ceeCHHHHHHH
Confidence 446789999999999999998 779999999752110 1 22348999999
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEEeCCCCC-----HHHHHH---HHHHHHHcCCceeeecchhHHHHHHhccccCCCcceE
Q 006194 151 ILQKMKETAEAYLGKKIKDAVVTVPAYFN-----DAQRQA---TKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEMNI 222 (657)
Q Consensus 151 ~L~~l~~~a~~~~~~~~~~~vitVPa~~~-----~~qr~~---l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~v 222 (657)
+|++|++.++.+++.++.++|||||++|+ +.||++ +++||+.||++++++++||+|||++|+.... .+..+
T Consensus 133 iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~-~~~~v 211 (450)
T PRK11678 133 MMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT-EEKRV 211 (450)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC-CCCeE
Confidence 99999999999999999999999999998 778765 7999999999999999999999999987654 47789
Q ss_pred EEEEecCCeeEEEEEEEeCC-------eEEEEEEeCCCCCccchhhHHHH-HHHHHHHHh----hcCCCC----------
Q 006194 223 LVYDLGGGTFDVSILTIDNG-------VFEVLATSGDTHLGGEDFDHRVM-DYFIKLIKK----KYNKDI---------- 280 (657)
Q Consensus 223 lv~D~Gggt~dvsv~~~~~~-------~~~v~~~~~~~~lGG~~~d~~l~-~~l~~~~~~----~~~~~~---------- 280 (657)
||||+||||+|+|++++.++ ..+++++.| ..+||.+||..|+ +++...|.. +.+.++
T Consensus 212 lV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~~~~~ 290 (450)
T PRK11678 212 LVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVA 290 (450)
T ss_pred EEEEeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhhhhhh
Confidence 99999999999999999654 357899888 6899999999998 677777642 122110
Q ss_pred -------------------------CCCHHHH------------HHHHHHHHHHHHHccCCceeEEEEeeccCCceeEEE
Q 006194 281 -------------------------SKDNKAI------------GKLRRECERAKRALSSQHQVRVEIESLFDGVDFSEP 323 (657)
Q Consensus 281 -------------------------~~~~~~~------------~~L~~~~e~~K~~Ls~~~~~~~~i~~l~~~~~~~~~ 323 (657)
..+++.+ .+|+.+||++|+.||.++.+.+.++.+. .++...
T Consensus 291 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~--~~~~~~ 368 (450)
T PRK11678 291 INDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS--DGLATE 368 (450)
T ss_pred hhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC--CCccee
Confidence 0123223 3788999999999999999999988654 457899
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHH
Q 006194 324 LTRARFEELNMDLFKKTMGPVKKALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQ 403 (657)
Q Consensus 324 itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~ 403 (657)
|||++|+++++++++++..+++++|+.+++. ++.|+||||+|++|.|++.+++.||+.++. ..+|.++||.|+|++
T Consensus 369 ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~-~g~~~~sVa~Gla~~ 444 (450)
T PRK11678 369 ISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIV-GGDDFGSVTAGLARW 444 (450)
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEE-eCCCcchHHHHHHHH
Confidence 9999999999999999999999999999875 489999999999999999999999665555 459999999999999
Q ss_pred Hhhh
Q 006194 404 GGIL 407 (657)
Q Consensus 404 a~~~ 407 (657)
|..+
T Consensus 445 a~~~ 448 (450)
T PRK11678 445 AQVV 448 (450)
T ss_pred HHhh
Confidence 9753
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=5.2e-38 Score=327.65 Aligned_cols=308 Identities=26% Similarity=0.335 Sum_probs=238.2
Q ss_pred EEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEEcCC---ceeEcHHHHHHHhhcccchhhHhHHhhCCCCCCHH
Q 006194 34 VIGIDLGTTYSCVGVYRNGRVEIIANDQGNRITPSWVAFTDT---ERLIGEAAKNQAALNAERTVFDVKRLIGRKFDDPE 110 (657)
Q Consensus 34 viGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~---~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~ 110 (657)
-+||||||+|++|+....+ .++. .||+|+++.. -..+|++|.....+.|.+....
T Consensus 5 ~~gIDlGt~~~~i~~~~~~--~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~------------- 62 (336)
T PRK13928 5 DIGIDLGTANVLVYVKGKG--IVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAI------------- 62 (336)
T ss_pred eeEEEcccccEEEEECCCC--EEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEE-------------
Confidence 3899999999999876333 3443 4999999953 3478999977665555543310
Q ss_pred HHhhhccCCeEEeecCCceeEEEEEcCceeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 006194 111 VQRDIKFLPYKIVNKGGKPYIQVKVKGETKVFSPEEISAMILQKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKDAG 190 (657)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa 190 (657)
.|. . + ..+...+++..+++++.+.+..........+|||||++|+..||+++++|+
T Consensus 63 -------~pi----~----------~---G~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~ 118 (336)
T PRK13928 63 -------RPL----R----------D---GVIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAA 118 (336)
T ss_pred -------ccC----C----------C---CeEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 010 0 1 123345667778888876554322233447999999999999999999999
Q ss_pred HHcCCceeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHHHH
Q 006194 191 IIAGLNVARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFIK 270 (657)
Q Consensus 191 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~ 270 (657)
+.||++.+.+++||+|||++|+..... +..++|||+||||||+++++..... ..++..+||.+||+.|++++..
T Consensus 119 ~~ag~~~~~li~ep~Aaa~~~g~~~~~-~~~~lVvDiGggttdvsvv~~g~~~-----~~~~~~lGG~did~~i~~~l~~ 192 (336)
T PRK13928 119 EQAGAKKVYLIEEPLAAAIGAGLDISQ-PSGNMVVDIGGGTTDIAVLSLGGIV-----TSSSIKVAGDKFDEAIIRYIRK 192 (336)
T ss_pred HHcCCCceEecccHHHHHHHcCCcccC-CCeEEEEEeCCCeEEEEEEEeCCEE-----EeCCcCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999986543 6679999999999999999975321 3467899999999999999876
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHHHHHHHHccCCc----eeEEEEe--eccCCceeEEEecHHHHHHHHHHHHHHHHHHH
Q 006194 271 LIKKKYNKDISKDNKAIGKLRRECERAKRALSSQH----QVRVEIE--SLFDGVDFSEPLTRARFEELNMDLFKKTMGPV 344 (657)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----~~~~~i~--~l~~~~~~~~~itr~~fe~~~~~~~~~~~~~i 344 (657)
++. .... ...||++|+.++... ...+.+. .+..+.+..+.|+|++|++++.+.++++...|
T Consensus 193 ~~~----~~~~---------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~i 259 (336)
T PRK13928 193 KYK----LLIG---------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREALKEPVSAIVQAV 259 (336)
T ss_pred Hhc----hhcC---------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHHHHHHHHHHHHHHHHHHH
Confidence 553 2221 257999999986541 1233332 23445667789999999999999999999999
Q ss_pred HHHHHHcC--CCCCCcc-eEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHHHhhh
Q 006194 345 KKALEDAG--LKKTDIR-EIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQGGIL 407 (657)
Q Consensus 345 ~~~l~~~~--~~~~~i~-~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~a~~~ 407 (657)
.+.|+.++ +....++ .|+|+||+|++|.+++.|++.| +.++....||+++||+|||+++..+
T Consensus 260 ~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~-~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 260 KSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEET-KVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred HHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhch
Confidence 99999986 3345677 7999999999999999999999 7788888899999999999998764
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=2.3e-37 Score=321.54 Aligned_cols=306 Identities=26% Similarity=0.372 Sum_probs=243.7
Q ss_pred eEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEEcCC-c--eeEcHHHHHHHhhcccchhhHhHHhhCCCCCCH
Q 006194 33 TVIGIDLGTTYSCVGVYRNGRVEIIANDQGNRITPSWVAFTDT-E--RLIGEAAKNQAALNAERTVFDVKRLIGRKFDDP 109 (657)
Q Consensus 33 ~viGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-~--~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~ 109 (657)
..+||||||+|+++ +.+++.. +.|. ||+|+++.+ . ..+|++|+....++|.++... + +..
T Consensus 5 ~~~giDlGt~~~~i--~~~~~~~-~~~~------ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~----pi~-- 67 (335)
T PRK13929 5 TEIGIDLGTANILV--YSKNKGI-ILNE------PSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--R----PMK-- 67 (335)
T ss_pred CeEEEEcccccEEE--EECCCcE-EecC------CcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--e----cCC--
Confidence 46999999999985 5555443 4453 999999854 2 579999999888888775431 1 100
Q ss_pred HHHhhhccCCeEEeecCCceeEEEEEcCceeEeCHHHHHHHHHHHHHHHHHHHhCCCCC--cEEEEeCCCCCHHHHHHHH
Q 006194 110 EVQRDIKFLPYKIVNKGGKPYIQVKVKGETKVFSPEEISAMILQKMKETAEAYLGKKIK--DAVVTVPAYFNDAQRQATK 187 (657)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~--~~vitVPa~~~~~qr~~l~ 187 (657)
+| .+...++++.+|++++..++..++..+. .+|||||++|+..||+++.
T Consensus 68 --------------------------~G---~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~ 118 (335)
T PRK13929 68 --------------------------DG---VIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAIS 118 (335)
T ss_pred --------------------------CC---ccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHH
Confidence 11 2233478899999999998887776554 7999999999999999999
Q ss_pred HHHHHcCCceeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHH
Q 006194 188 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDY 267 (657)
Q Consensus 188 ~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~ 267 (657)
+|++.||++.+.+++||+|||++|++.... +..++|+|+|+||+|++++++.+-. ..++..+||.+||+.|.++
T Consensus 119 ~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~-~~~~lvvDiG~gtt~v~vi~~~~~~-----~~~~~~~GG~~id~~l~~~ 192 (335)
T PRK13929 119 DAVKNCGAKNVHLIEEPVAAAIGADLPVDE-PVANVVVDIGGGTTEVAIISFGGVV-----SCHSIRIGGDQLDEDIVSF 192 (335)
T ss_pred HHHHHcCCCeeEeecCHHHHHHhcCCCcCC-CceEEEEEeCCCeEEEEEEEeCCEE-----EecCcCCHHHHHHHHHHHH
Confidence 999999999999999999999999876543 6679999999999999999875422 3456789999999999999
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHccCCc----eeEEEEe--eccCCceeEEEecHHHHHHHHHHHHHHHH
Q 006194 268 FIKLIKKKYNKDISKDNKAIGKLRRECERAKRALSSQH----QVRVEIE--SLFDGVDFSEPLTRARFEELNMDLFKKTM 341 (657)
Q Consensus 268 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----~~~~~i~--~l~~~~~~~~~itr~~fe~~~~~~~~~~~ 341 (657)
+.+.+ +.... ...||++|+.++... ...+.+. .+..+....+.+++++|+++|.+.+.++.
T Consensus 193 l~~~~----~~~~~---------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~i~~~~~~~~i~~~l~~i~ 259 (335)
T PRK13929 193 VRKKY----NLLIG---------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRESLLHIL 259 (335)
T ss_pred HHHHh----CcCcC---------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEEEEcHHHHHHHHHHHHHHHH
Confidence 76543 32221 268999999998632 2223332 23345567889999999999999999999
Q ss_pred HHHHHHHHHcCCC--CCCcc-eEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHHH
Q 006194 342 GPVKKALEDAGLK--KTDIR-EIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQG 404 (657)
Q Consensus 342 ~~i~~~l~~~~~~--~~~i~-~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~a 404 (657)
+.|.+.|+.++.. ...++ .|+|+||+|++|.+.+.+++.| +.++....||+++||+||+..-
T Consensus 260 ~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~-~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 260 EAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEI-VVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHH-CCCceeCCCHHHHHHHHHHHHH
Confidence 9999999998643 35567 6999999999999999999999 7888888899999999999874
No 23
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=4.9e-35 Score=305.90 Aligned_cols=308 Identities=26% Similarity=0.370 Sum_probs=230.2
Q ss_pred CeEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEEcCC---ceeEcHHHHHHHhhcccchhhHhHHhhCCCCCC
Q 006194 32 GTVIGIDLGTTYSCVGVYRNGRVEIIANDQGNRITPSWVAFTDT---ERLIGEAAKNQAALNAERTVFDVKRLIGRKFDD 108 (657)
Q Consensus 32 ~~viGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~---~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~ 108 (657)
+..|||||||++++++....+ .++ .+||+|++... ..++|++|.....+.|.++...
T Consensus 5 ~~~igIDlGt~~~~i~~~~~~--~~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~----------- 64 (334)
T PRK13927 5 SNDLGIDLGTANTLVYVKGKG--IVL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAI----------- 64 (334)
T ss_pred cceeEEEcCcceEEEEECCCc--EEE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEE-----------
Confidence 456999999999998543332 233 26999999754 3489999987766665543210
Q ss_pred HHHHhhhccCCeEEeecCCceeEEEEEcCceeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHH
Q 006194 109 PEVQRDIKFLPYKIVNKGGKPYIQVKVKGETKVFSPEEISAMILQKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKD 188 (657)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~ 188 (657)
+|.. +| .+.-.+.+..+++++....... ......+|+|+|++|+..+|+++++
T Consensus 65 ---------~pi~--------------~G---~i~d~~~~~~ll~~~~~~~~~~-~~~~~~~vi~vP~~~~~~~r~~~~~ 117 (334)
T PRK13927 65 ---------RPMK--------------DG---VIADFDVTEKMLKYFIKKVHKN-FRPSPRVVICVPSGITEVERRAVRE 117 (334)
T ss_pred ---------ecCC--------------CC---eecCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEeCCCCCHHHHHHHHH
Confidence 0100 12 1111233455555555444332 2222489999999999999999999
Q ss_pred HHHHcCCceeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHH
Q 006194 189 AGIIAGLNVARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYF 268 (657)
Q Consensus 189 Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l 268 (657)
|++.||++.+.+++||+|||++|+..... +..++|||+||||+|+++++..+.. ..++..+||.+||+.|.+++
T Consensus 118 a~~~ag~~~~~li~ep~aaa~~~g~~~~~-~~~~lvvDiGggttdvs~v~~~~~~-----~~~~~~lGG~~id~~l~~~l 191 (334)
T PRK13927 118 SALGAGAREVYLIEEPMAAAIGAGLPVTE-PTGSMVVDIGGGTTEVAVISLGGIV-----YSKSVRVGGDKFDEAIINYV 191 (334)
T ss_pred HHHHcCCCeeccCCChHHHHHHcCCcccC-CCeEEEEEeCCCeEEEEEEecCCeE-----eeCCcCChHHHHHHHHHHHH
Confidence 99999999999999999999999876543 5668999999999999999876432 34557899999999999998
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHccCCce----eEEEE--eeccCCceeEEEecHHHHHHHHHHHHHHHHH
Q 006194 269 IKLIKKKYNKDISKDNKAIGKLRRECERAKRALSSQHQ----VRVEI--ESLFDGVDFSEPLTRARFEELNMDLFKKTMG 342 (657)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----~~~~i--~~l~~~~~~~~~itr~~fe~~~~~~~~~~~~ 342 (657)
.+.+ +.... ...||++|+.++.... ..+.+ +.+..+.+..+.|+|++|++++.+.++++.+
T Consensus 192 ~~~~----~~~~~---------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~ 258 (334)
T PRK13927 192 RRNY----NLLIG---------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEIREALQEPLSAIVE 258 (334)
T ss_pred HHHh----CcCcC---------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEECHHHHHHHHHHHHHHHHH
Confidence 7544 32221 2578999999875432 22333 2334456668899999999999999999999
Q ss_pred HHHHHHHHcCCC--CCCcc-eEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHHHhh
Q 006194 343 PVKKALEDAGLK--KTDIR-EIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQGGI 406 (657)
Q Consensus 343 ~i~~~l~~~~~~--~~~i~-~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~a~~ 406 (657)
.|.++|+.++.. ...++ .|+|+||+|++|.+++.|++.| +.++....||+++||+||++++..
T Consensus 259 ~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~-~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 259 AVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEET-GLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHH-CCCcEecCCHHHHHHHHHHHHHhh
Confidence 999999988643 22234 5999999999999999999999 678888889999999999999865
No 24
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=9.5e-35 Score=302.99 Aligned_cols=307 Identities=26% Similarity=0.367 Sum_probs=226.7
Q ss_pred EEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEEcCC-----c--eeEcHHHHHHHhhcccchhhHhHHhhCCCC
Q 006194 34 VIGIDLGTTYSCVGVYRNGRVEIIANDQGNRITPSWVAFTDT-----E--RLIGEAAKNQAALNAERTVFDVKRLIGRKF 106 (657)
Q Consensus 34 viGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-----~--~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~ 106 (657)
-+||||||+||+++....|. ++ ..||+|+|.++ . ..+|++|.....+.|.+.. +++-+.
T Consensus 4 ~~giDlGt~~s~i~~~~~~~--~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~pi~--- 69 (333)
T TIGR00904 4 DIGIDLGTANTLVYVKGRGI--VL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV--AIRPMK--- 69 (333)
T ss_pred eeEEecCcceEEEEECCCCE--EE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE--EEecCC---
Confidence 39999999999998854442 33 26999999743 2 6799999776555554432 011110
Q ss_pred CCHHHHhhhccCCeEEeecCCceeEEEEEcCceeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHH
Q 006194 107 DDPEVQRDIKFLPYKIVNKGGKPYIQVKVKGETKVFSPEEISAMILQKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQAT 186 (657)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l 186 (657)
+| . +...+.+..+++++........+.....+|+|||++|+..+|+++
T Consensus 70 -----------------------------~G--~-i~d~~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~ 117 (333)
T TIGR00904 70 -----------------------------DG--V-IADFEVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAV 117 (333)
T ss_pred -----------------------------CC--E-EEcHHHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHH
Confidence 12 1 111233444555555443322222223899999999999999999
Q ss_pred HHHHHHcCCceeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHH
Q 006194 187 KDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMD 266 (657)
Q Consensus 187 ~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 266 (657)
++|++.+|++.+.+++||+|||++|+.... .+..++|||+||||+|+++++..+.. ..++..+||++||+.|++
T Consensus 118 ~~~~~~ag~~~~~li~ep~aaa~~~g~~~~-~~~~~lVvDiG~gttdvs~v~~~~~~-----~~~~~~lGG~did~~l~~ 191 (333)
T TIGR00904 118 KESALSAGAREVYLIEEPMAAAIGAGLPVE-EPTGSMVVDIGGGTTEVAVISLGGIV-----VSRSIRVGGDEFDEAIIN 191 (333)
T ss_pred HHHHHHcCCCeEEEecCHHHHHHhcCCccc-CCceEEEEEcCCCeEEEEEEEeCCEE-----ecCCccchHHHHHHHHHH
Confidence 999999999999999999999999987544 35678999999999999999876422 245678999999999999
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHccCCce-----eEEEEee--ccCCceeEEEecHHHHHHHHHHHHHH
Q 006194 267 YFIKLIKKKYNKDISKDNKAIGKLRRECERAKRALSSQHQ-----VRVEIES--LFDGVDFSEPLTRARFEELNMDLFKK 339 (657)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~-----~~~~i~~--l~~~~~~~~~itr~~fe~~~~~~~~~ 339 (657)
++.+.+ +.... ++.||++|+.++.... ..+.+.. ...+......|+++++.+++.+.+.+
T Consensus 192 ~l~~~~----~~~~~---------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~ 258 (333)
T TIGR00904 192 YIRRTY----NLLIG---------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREALQEPVNQ 258 (333)
T ss_pred HHHHHh----cccCC---------HHHHHHHHHHHhccccccccccceeecCccccCCCCeEEEECHHHHHHHHHHHHHH
Confidence 987554 22221 2679999999975322 1222211 12233456789999999999999999
Q ss_pred HHHHHHHHHHHcCCCC-CCc-c-eEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHHHhh
Q 006194 340 TMGPVKKALEDAGLKK-TDI-R-EIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQGGI 406 (657)
Q Consensus 340 ~~~~i~~~l~~~~~~~-~~i-~-~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~a~~ 406 (657)
+.+.+.+.++.++... .++ + .|+|+||+|++|.+++.|++.| +.++....||+++||.||++++..
T Consensus 259 i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~-~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 259 IVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKET-GLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHH-CCCceecCChHHHHHHHHHHHHhC
Confidence 9999999999876432 234 3 6999999999999999999999 788888889999999999999754
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=1.5e-33 Score=295.01 Aligned_cols=309 Identities=27% Similarity=0.352 Sum_probs=233.9
Q ss_pred eEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEEcCC---ceeEcHHHHHHHhhcccchhhHhHHhhCCCCCCH
Q 006194 33 TVIGIDLGTTYSCVGVYRNGRVEIIANDQGNRITPSWVAFTDT---ERLIGEAAKNQAALNAERTVFDVKRLIGRKFDDP 109 (657)
Q Consensus 33 ~viGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~---~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~ 109 (657)
..+||||||+++++++...+ + ++ .+||+|++... ..++|++|.......|.+... +
T Consensus 9 ~~vgiDlGt~~t~i~~~~~~-~-~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~--~---------- 67 (335)
T PRK13930 9 KDIGIDLGTANTLVYVKGKG-I-VL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIEA--I---------- 67 (335)
T ss_pred cceEEEcCCCcEEEEECCCC-E-EE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeEE--e----------
Confidence 45999999999999987333 2 32 15999999752 468999997766544443210 0
Q ss_pred HHHhhhccCCeEEeecCCceeEEEEEcCceeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHH
Q 006194 110 EVQRDIKFLPYKIVNKGGKPYIQVKVKGETKVFSPEEISAMILQKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKDA 189 (657)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~A 189 (657)
.|+. +| .+...+.+..+++++.+.+..........+|+|+|++|+..+|+++.+|
T Consensus 68 --------~pi~--------------~G---~i~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~ 122 (335)
T PRK13930 68 --------RPLK--------------DG---VIADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREA 122 (335)
T ss_pred --------ecCC--------------CC---eEcCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 1110 12 1222455777888887666554444567899999999999999999999
Q ss_pred HHHcCCceeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHHH
Q 006194 190 GIIAGLNVARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFI 269 (657)
Q Consensus 190 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~ 269 (657)
++.+|++.+.+++||+|||++|+..... +..++|||+||||+|++++...... ..+...+||.+||+.|.+++.
T Consensus 123 ~e~~g~~~~~lv~ep~AAa~a~g~~~~~-~~~~lVvDiG~gttdvs~v~~g~~~-----~~~~~~lGG~~id~~l~~~l~ 196 (335)
T PRK13930 123 AEHAGAREVYLIEEPMAAAIGAGLPVTE-PVGNMVVDIGGGTTEVAVISLGGIV-----YSESIRVAGDEMDEAIVQYVR 196 (335)
T ss_pred HHHcCCCeEEecccHHHHHHhcCCCcCC-CCceEEEEeCCCeEEEEEEEeCCEE-----eecCcCchhHHHHHHHHHHHH
Confidence 9999999999999999999999876543 4567999999999999999875422 256689999999999999987
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHccCCce----eEEEEe--eccCCceeEEEecHHHHHHHHHHHHHHHHHH
Q 006194 270 KLIKKKYNKDISKDNKAIGKLRRECERAKRALSSQHQ----VRVEIE--SLFDGVDFSEPLTRARFEELNMDLFKKTMGP 343 (657)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----~~~~i~--~l~~~~~~~~~itr~~fe~~~~~~~~~~~~~ 343 (657)
+++ +.... ...||++|+.++.... ..+.+. .+..+.+..+.|++++|++++.+.++++.+.
T Consensus 197 ~~~----~~~~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~ 263 (335)
T PRK13930 197 RKY----NLLIG---------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISSEEVREALAEPLQQIVEA 263 (335)
T ss_pred HHh----CCCCC---------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECHHHHHHHHHHHHHHHHHH
Confidence 653 32221 1579999999975432 223332 2233445678899999999999999999999
Q ss_pred HHHHHHHcCCC--CCCcce-EEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHHHhhh
Q 006194 344 VKKALEDAGLK--KTDIRE-IVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQGGIL 407 (657)
Q Consensus 344 i~~~l~~~~~~--~~~i~~-V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~a~~~ 407 (657)
+.++++.+... ...++. |+|+||+|++|.+++.|++.| +.++....+|++++|+||++.+...
T Consensus 264 i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~-~~~v~~~~~p~~ava~Ga~~~~~~~ 329 (335)
T PRK13930 264 VKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET-GLPVHIAEDPLTCVARGTGKALENL 329 (335)
T ss_pred HHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhCh
Confidence 99999987533 223454 999999999999999999999 6778888899999999999998643
No 26
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.98 E-value=1e-31 Score=271.85 Aligned_cols=306 Identities=28% Similarity=0.389 Sum_probs=217.8
Q ss_pred EEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEEcCC---ceeEcHHHHHHHhhcccchhhHhHHhhCCCCCCHH
Q 006194 34 VIGIDLGTTYSCVGVYRNGRVEIIANDQGNRITPSWVAFTDT---ERLIGEAAKNQAALNAERTVFDVKRLIGRKFDDPE 110 (657)
Q Consensus 34 viGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~---~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~ 110 (657)
-+||||||+|+.|+.-..| ++.++ ||+|+++.+ -..+|++|.....+.|.+..
T Consensus 3 ~igIDLGT~~t~i~~~~~G---iv~~e------pSvVA~~~~~~~i~avG~~A~~m~gktp~~i~--------------- 58 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYVKGKG---IVLNE------PSVVAYDKDTGKILAVGDEAKAMLGKTPDNIE--------------- 58 (326)
T ss_dssp EEEEEE-SSEEEEEETTTE---EEEEE------ES-EEEETTT--EEEESHHHHTTTTS-GTTEE---------------
T ss_pred ceEEecCcccEEEEECCCC---EEEec------CcEEEEECCCCeEEEEhHHHHHHhhcCCCccE---------------
Confidence 5899999999998443333 33333 999999865 45689999555444443321
Q ss_pred HHhhhccCCeEEeecCCceeEEEEEcCceeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 006194 111 VQRDIKFLPYKIVNKGGKPYIQVKVKGETKVFSPEEISAMILQKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKDAG 190 (657)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa 190 (657)
+. .|. -+| .+.--++...+|+++.+.+.......-..++++||+.-++.+|+++.+|+
T Consensus 59 ~~-----~Pl--------------~~G---vI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~ 116 (326)
T PF06723_consen 59 VV-----RPL--------------KDG---VIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAA 116 (326)
T ss_dssp EE------SE--------------ETT---EESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHH
T ss_pred EE-----ccc--------------cCC---cccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 10 111 023 23335677888888888776532334568999999999999999999999
Q ss_pred HHcCCceeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHHHH
Q 006194 191 IIAGLNVARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFIK 270 (657)
Q Consensus 191 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~ 270 (657)
..+|.+.+.++.||.|||+..+++-.. +...||+|+||||+|++++...+ + +. +.....||++||++|.+|+.+
T Consensus 117 ~~aGa~~V~li~ep~AaAiGaGl~i~~-~~g~miVDIG~GtTdiavislgg--i--v~-s~si~~gG~~~DeaI~~~ir~ 190 (326)
T PF06723_consen 117 RQAGARKVYLIEEPIAAAIGAGLDIFE-PRGSMIVDIGGGTTDIAVISLGG--I--VA-SRSIRIGGDDIDEAIIRYIRE 190 (326)
T ss_dssp HHTT-SEEEEEEHHHHHHHHTT--TTS-SS-EEEEEE-SS-EEEEEEETTE--E--EE-EEEES-SHHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEecchHHHHhcCCCCCCC-CCceEEEEECCCeEEEEEEECCC--E--EE-EEEEEecCcchhHHHHHHHHH
Confidence 999999999999999999999988764 67789999999999999997543 1 22 222578999999999999766
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHHHHHHHHccCCc----eeEEEE--eeccCCceeEEEecHHHHHHHHHHHHHHHHHHH
Q 006194 271 LIKKKYNKDISKDNKAIGKLRRECERAKRALSSQH----QVRVEI--ESLFDGVDFSEPLTRARFEELNMDLFKKTMGPV 344 (657)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----~~~~~i--~~l~~~~~~~~~itr~~fe~~~~~~~~~~~~~i 344 (657)
++ +..+.. ..||++|+.++... +..+.+ ..+..|....+.|+.+++.+++.+.+.++.+.|
T Consensus 191 ~y----~l~Ig~---------~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~~i 257 (326)
T PF06723_consen 191 KY----NLLIGE---------RTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQIVEAI 257 (326)
T ss_dssp HH----SEE--H---------HHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred hh----CcccCH---------HHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHHHHHHH
Confidence 65 333332 78999999987542 223444 456778889999999999999999999999999
Q ss_pred HHHHHHcCCC-CCCc--ceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHHHh
Q 006194 345 KKALEDAGLK-KTDI--REIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQGG 405 (657)
Q Consensus 345 ~~~l~~~~~~-~~~i--~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~a~ 405 (657)
+++|+...-. ..|| +.|+|+||+++++.+.+.|++.+ +.++...-||..+||.||.....
T Consensus 258 ~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~-~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 258 KEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEET-GVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH-SS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHH-CCCEEEcCCHHHHHHHHHHHHHh
Confidence 9999975322 1133 57999999999999999999999 89999999999999999998654
No 27
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.97 E-value=1.4e-29 Score=249.06 Aligned_cols=202 Identities=24% Similarity=0.354 Sum_probs=173.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeecchhHHHHHHhccccCCCcceE
Q 006194 143 SPEEISAMILQKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEMNI 222 (657)
Q Consensus 143 ~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~v 222 (657)
.--+..+++|+++++.++..++.++.++|+|||++|++.||+++.+|++.||++++.+++||.|++++|+.. ..
T Consensus 37 ~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~------~~ 110 (239)
T TIGR02529 37 VDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK------NG 110 (239)
T ss_pred EEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC------Cc
Confidence 335678999999999999989989999999999999999999999999999999999999999999998643 25
Q ss_pred EEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcc
Q 006194 223 LVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFIKLIKKKYNKDISKDNKAIGKLRRECERAKRALS 302 (657)
Q Consensus 223 lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls 302 (657)
+|+|+||||+|+++++. +.+ +. ..+..+||++||+.|.+.+ +.+. .+||++|+.++
T Consensus 111 ~vvDiGggtt~i~i~~~--G~i--~~-~~~~~~GG~~it~~Ia~~~--------~i~~-----------~~AE~~K~~~~ 166 (239)
T TIGR02529 111 AVVDVGGGTTGISILKK--GKV--IY-SADEPTGGTHMSLVLAGAY--------GISF-----------EEAEEYKRGHK 166 (239)
T ss_pred EEEEeCCCcEEEEEEEC--CeE--EE-EEeeecchHHHHHHHHHHh--------CCCH-----------HHHHHHHHhcC
Confidence 99999999999999764 332 22 4457899999999887653 2222 78999998754
Q ss_pred CCceeEEEEeeccCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcC
Q 006194 303 SQHQVRVEIESLFDGVDFSEPLTRARFEELNMDLFKKTMGPVKKALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFD 382 (657)
Q Consensus 303 ~~~~~~~~i~~l~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~ 382 (657)
. .+++.+++.+.++++...+++.|+.. .++.|+|+||+|++|.+++.+++.|
T Consensus 167 ~----------------------~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~~~l- 218 (239)
T TIGR02529 167 D----------------------EEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFEKQL- 218 (239)
T ss_pred C----------------------HHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHHHHh-
Confidence 1 45677899999999999999999864 4578999999999999999999999
Q ss_pred CCCCCCCCCchhhhHhHHHH
Q 006194 383 GKEPSKGINPDEAVAHGAAV 402 (657)
Q Consensus 383 ~~~v~~~~~~~~ava~GAa~ 402 (657)
+.++..+.||++++|.|||+
T Consensus 219 g~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 219 GLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred CCCcccCCCCCeehhheeec
Confidence 78888899999999999986
No 28
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.97 E-value=1.3e-28 Score=238.31 Aligned_cols=310 Identities=28% Similarity=0.400 Sum_probs=239.3
Q ss_pred eEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEEcC--C---ceeEcHHHHHHHhhcccchhhHhHHhhCCCCC
Q 006194 33 TVIGIDLGTTYSCVGVYRNGRVEIIANDQGNRITPSWVAFTD--T---ERLIGEAAKNQAALNAERTVFDVKRLIGRKFD 107 (657)
Q Consensus 33 ~viGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~--~---~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~ 107 (657)
.-+||||||.|+.|..-..| ++.++ ||+|++.. + -..+|.+| |+++|+...
T Consensus 7 ~diGIDLGTanTlV~~k~kg---IVl~e------PSVVAi~~~~~~~~v~aVG~eA---------------K~MlGrTP~ 62 (342)
T COG1077 7 NDIGIDLGTANTLVYVKGKG---IVLNE------PSVVAIESEGKTKVVLAVGEEA---------------KQMLGRTPG 62 (342)
T ss_pred ccceeeecccceEEEEcCce---EEecC------ceEEEEeecCCCceEEEehHHH---------------HHHhccCCC
Confidence 46999999999999765333 55555 99999987 3 45689999 555565443
Q ss_pred CHHHHhhhccCCeEEeecCCceeEEEEEcCceeEeCHHHHHHHHHHHHHHHHHHHhC-CCCCcEEEEeCCCCCHHHHHHH
Q 006194 108 DPEVQRDIKFLPYKIVNKGGKPYIQVKVKGETKVFSPEEISAMILQKMKETAEAYLG-KKIKDAVVTVPAYFNDAQRQAT 186 (657)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~-~~~~~~vitVPa~~~~~qr~~l 186 (657)
+-...+.++ +| .+.--++...+++|+.+......+ .....+++.||+.-++.+|+++
T Consensus 63 ni~aiRPmk-------------------dG---VIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi 120 (342)
T COG1077 63 NIVAIRPMK-------------------DG---VIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAI 120 (342)
T ss_pred CceEEeecC-------------------Cc---EeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHH
Confidence 321111111 22 344456777888888887764333 3445799999999999999999
Q ss_pred HHHHHHcCCceeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHH
Q 006194 187 KDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMD 266 (657)
Q Consensus 187 ~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 266 (657)
++|++.||...+.++.||.|||+..++.-.. +..-+|||+||||+|++++.+.+-. +.....+||+.||+.+.+
T Consensus 121 ~ea~~~aGa~~V~lieEp~aAAIGaglpi~e-p~G~mvvDIGgGTTevaVISlggiv-----~~~Sirv~GD~~De~Ii~ 194 (342)
T COG1077 121 KEAAESAGAREVYLIEEPMAAAIGAGLPIME-PTGSMVVDIGGGTTEVAVISLGGIV-----SSSSVRVGGDKMDEAIIV 194 (342)
T ss_pred HHHHHhccCceEEEeccHHHHHhcCCCcccC-CCCCEEEEeCCCceeEEEEEecCEE-----EEeeEEEecchhhHHHHH
Confidence 9999999999999999999999998877654 4556899999999999999987532 233367999999999999
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHccCCc--------eeEEEEeeccCCceeEEEecHHHHHHHHHHHHH
Q 006194 267 YFIKLIKKKYNKDISKDNKAIGKLRRECERAKRALSSQH--------QVRVEIESLFDGVDFSEPLTRARFEELNMDLFK 338 (657)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~--------~~~~~i~~l~~~~~~~~~itr~~fe~~~~~~~~ 338 (657)
|+. ++|+..+.. +.||++|....... +.++.-.++..|..-.++++.+++.+.+++.++
T Consensus 195 yvr----~~~nl~IGe---------~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~~~v~ 261 (342)
T COG1077 195 YVR----KKYNLLIGE---------RTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALEEPLN 261 (342)
T ss_pred HHH----HHhCeeecH---------HHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHHHHHHH
Confidence 955 445555544 56899998874331 234444566677888899999999999999999
Q ss_pred HHHHHHHHHHHHcCCC--CCCcce-EEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHHHhhhc
Q 006194 339 KTMGPVKKALEDAGLK--KTDIRE-IVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQGGILS 408 (657)
Q Consensus 339 ~~~~~i~~~l~~~~~~--~~~i~~-V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~a~~~~ 408 (657)
++.+.++..|+...-. .+-++. ++|+||++.+..+.+.|++.. +.++....+|-.+||+|+......+.
T Consensus 262 ~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et-~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 262 GIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEET-GVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred HHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhcc-CCeEEECCChHHHHHhccchhhhhhH
Confidence 9999999999986322 222344 999999999999999999999 78888888999999999998877654
No 29
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.96 E-value=9.5e-27 Score=233.24 Aligned_cols=202 Identities=27% Similarity=0.393 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeecchhHHHHHHhccccCCCcceEEE
Q 006194 145 EEISAMILQKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEMNILV 224 (657)
Q Consensus 145 ~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv 224 (657)
-+.....|+++++.++.+++..+..++++||++|+..+|+++.+|++.||+++..+++||.|++.+|... ..++
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~------~~~v 139 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID------NGAV 139 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC------CcEE
Confidence 4566778899999999998988999999999999999999999999999999999999999999987642 2589
Q ss_pred EEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHccCC
Q 006194 225 YDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFIKLIKKKYNKDISKDNKAIGKLRRECERAKRALSSQ 304 (657)
Q Consensus 225 ~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~ 304 (657)
+|+||||+|+++++ ++.+ + ..++..+||++||+.|++++ +.+ +++||++|+.++
T Consensus 140 vDIGggtt~i~v~~--~g~~--~-~~~~~~~GG~~it~~Ia~~l--------~i~-----------~~eAE~lK~~~~-- 193 (267)
T PRK15080 140 VDIGGGTTGISILK--DGKV--V-YSADEPTGGTHMSLVLAGAY--------GIS-----------FEEAEQYKRDPK-- 193 (267)
T ss_pred EEeCCCcEEEEEEE--CCeE--E-EEecccCchHHHHHHHHHHh--------CCC-----------HHHHHHHHhccC--
Confidence 99999999999975 3332 2 23567999999999998774 222 268899987653
Q ss_pred ceeEEEEeeccCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCC
Q 006194 305 HQVRVEIESLFDGVDFSEPLTRARFEELNMDLFKKTMGPVKKALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGK 384 (657)
Q Consensus 305 ~~~~~~i~~l~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~ 384 (657)
+++++.+++++.++++.+.+++.++.. +++.|+|+||+|++|.+++.+++.| +.
T Consensus 194 --------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~l-g~ 247 (267)
T PRK15080 194 --------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQT-GL 247 (267)
T ss_pred --------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHHh-CC
Confidence 357789999999999999999999863 5789999999999999999999999 78
Q ss_pred CCCCCCCchhhhHhHHHHHH
Q 006194 385 EPSKGINPDEAVAHGAAVQG 404 (657)
Q Consensus 385 ~v~~~~~~~~ava~GAa~~a 404 (657)
++..+.||+.++|.|||+++
T Consensus 248 ~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 248 PVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred CcccCCCchHHHHHHHHhhC
Confidence 88889999999999999874
No 30
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.90 E-value=2e-22 Score=213.44 Aligned_cols=195 Identities=24% Similarity=0.320 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHHHcCCceeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccch
Q 006194 180 DAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGED 259 (657)
Q Consensus 180 ~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~ 259 (657)
....+.+.+|++.||+++..++.||.|+|++|..... .+..++|+|+|+||+|++++.. +.+. ......+||++
T Consensus 157 ~~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~-~~~~~~vvDiG~gtt~i~i~~~--g~~~---~~~~i~~GG~~ 230 (371)
T TIGR01174 157 STILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDE-KELGVCLIDIGGGTTDIAVYTG--GSIR---YTKVIPIGGNH 230 (371)
T ss_pred HHHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcch-hcCCEEEEEeCCCcEEEEEEEC--CEEE---EEeeecchHHH
Confidence 3456788889999999999999999999999854332 3567999999999999999863 3321 13446899999
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHccCC------ceeEEEEeeccCCceeEEEecHHHHHHHH
Q 006194 260 FDHRVMDYFIKLIKKKYNKDISKDNKAIGKLRRECERAKRALSSQ------HQVRVEIESLFDGVDFSEPLTRARFEELN 333 (657)
Q Consensus 260 ~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~------~~~~~~i~~l~~~~~~~~~itr~~fe~~~ 333 (657)
||+.+.+.+ +. ...+||++|+.++.. .+..+.++... .+....++|++|++++
T Consensus 231 it~~i~~~l--------~~-----------~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~is~~~l~~ii 289 (371)
T TIGR01174 231 ITKDIAKAL--------RT-----------PLEEAERIKIKYGCASIPLEGPDENIEIPSVG--ERPPRSLSRKELAEII 289 (371)
T ss_pred HHHHHHHHh--------CC-----------CHHHHHHHHHHeeEecccCCCCCCEEEeccCC--CCCCeEEcHHHHHHHH
Confidence 999987653 11 137899999999764 24456665443 4567899999999999
Q ss_pred HHHHHHHHHHHH-HHHHHcCCCCCCcce-EEEecCccCcHHHHHHHHhhcCCCCCCC------------CCCchhhhHhH
Q 006194 334 MDLFKKTMGPVK-KALEDAGLKKTDIRE-IVLVGGSTRIPKIQQLLKDFFDGKEPSK------------GINPDEAVAHG 399 (657)
Q Consensus 334 ~~~~~~~~~~i~-~~l~~~~~~~~~i~~-V~LvGG~sr~p~v~~~l~~~f~~~~v~~------------~~~~~~ava~G 399 (657)
++.++++...+. +.|+.++.. .+++. |+|+||+|++|.+++.+++.| +.++.. .-+|..++|.|
T Consensus 290 ~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~-~~~vr~~~P~~~~~~~~~~~~p~~~~a~G 367 (371)
T TIGR01174 290 EARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVF-DNPVRIGLPQNIGGLTEDVNDPEYSTAVG 367 (371)
T ss_pred HHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHh-CCCeEEECCCccCCchhhcCCcHHHHHHH
Confidence 999999999997 999998876 56776 999999999999999999999 443311 12678888888
Q ss_pred HHHH
Q 006194 400 AAVQ 403 (657)
Q Consensus 400 Aa~~ 403 (657)
.++|
T Consensus 368 l~~~ 371 (371)
T TIGR01174 368 LLLY 371 (371)
T ss_pred HHhC
Confidence 8764
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.89 E-value=2.6e-21 Score=207.07 Aligned_cols=196 Identities=21% Similarity=0.274 Sum_probs=147.9
Q ss_pred HHHHHHHHHHcCCceeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhH
Q 006194 183 RQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDH 262 (657)
Q Consensus 183 r~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~ 262 (657)
.+.+..|++.||+++..++.||.|+|.++.... ..+..++++|+||||||+++++ ++.+. ......+||+++++
T Consensus 168 ~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~-e~~~gv~vvDiGggtTdisv~~--~G~l~---~~~~i~~GG~~it~ 241 (420)
T PRK09472 168 AKNIVKAVERCGLKVDQLIFAGLASSYAVLTED-ERELGVCVVDIGGGTMDIAVYT--GGALR---HTKVIPYAGNVVTS 241 (420)
T ss_pred HHHHHHHHHHcCCeEeeEEehhhHHHHHhcChh-hhhcCeEEEEeCCCceEEEEEE--CCEEE---EEeeeechHHHHHH
Confidence 334456999999999999999999999985443 2466799999999999999997 34321 33446899999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHccCC------ceeEEEEeeccCCceeEEEecHHHHHHHHHHH
Q 006194 263 RVMDYFIKLIKKKYNKDISKDNKAIGKLRRECERAKRALSSQ------HQVRVEIESLFDGVDFSEPLTRARFEELNMDL 336 (657)
Q Consensus 263 ~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~------~~~~~~i~~l~~~~~~~~~itr~~fe~~~~~~ 336 (657)
.|+..+ +.+ ..+||++|..+... .+..+.++...+. ....++|.+|.+++.+.
T Consensus 242 dIa~~l--------~i~-----------~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~--~~~~i~~~~l~~ii~~r 300 (420)
T PRK09472 242 DIAYAF--------GTP-----------PSDAEAIKVRHGCALGSIVGKDESVEVPSVGGR--PPRSLQRQTLAEVIEPR 300 (420)
T ss_pred HHHHHh--------CcC-----------HHHHHHHHHhcceeccccCCCCceeEecCCCCC--CCeEEcHHHHHHHHHHH
Confidence 988653 111 27899999765421 2345666543322 23588999999999997
Q ss_pred HHHHHHHHHH-------HHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCC------------CCCchhhhH
Q 006194 337 FKKTMGPVKK-------ALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSK------------GINPDEAVA 397 (657)
Q Consensus 337 ~~~~~~~i~~-------~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~------------~~~~~~ava 397 (657)
++++.+.+.+ .+..+++....++.|+|+||+|++|.+++.+++.| +.++.. ..+|..++|
T Consensus 301 ~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f-~~~vri~~P~~~~g~~~~~~~P~~ata 379 (420)
T PRK09472 301 YTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVF-HTQVRIGAPLNITGLTDYAQEPYYSTA 379 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHh-CCCeEEeCCcccCCChhhcCCcHHHHH
Confidence 7777777665 45666777777899999999999999999999999 444321 248999999
Q ss_pred hHHHHHHhh
Q 006194 398 HGAAVQGGI 406 (657)
Q Consensus 398 ~GAa~~a~~ 406 (657)
.|.++++..
T Consensus 380 ~Gl~~~~~~ 388 (420)
T PRK09472 380 VGLLHYGKE 388 (420)
T ss_pred HHHHHHhhh
Confidence 999999763
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.81 E-value=8.3e-18 Score=174.84 Aligned_cols=198 Identities=26% Similarity=0.396 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHcCCceeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhh
Q 006194 182 QRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFD 261 (657)
Q Consensus 182 qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d 261 (657)
--+.+.+|.+++|+++..++.+|.|++.+.... ..++-.++++|+||||+|+++++-.. +.+.+..++||++++
T Consensus 166 ~~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~-dEkelGv~lIDiG~GTTdIai~~~G~-----l~~~~~ipvgG~~vT 239 (418)
T COG0849 166 ILENLEKCVERAGLKVDNIVLEPLASALAVLTE-DEKELGVALIDIGGGTTDIAIYKNGA-----LRYTGVIPVGGDHVT 239 (418)
T ss_pred HHHHHHHHHHHhCCCeeeEEEehhhhhhhccCc-ccHhcCeEEEEeCCCcEEEEEEECCE-----EEEEeeEeeCccHHH
Confidence 466788999999999999999999999876444 33577899999999999999997542 223455789999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHccCC------ceeEEEEeeccCCceeEEEecHHHHHHHHHH
Q 006194 262 HRVMDYFIKLIKKKYNKDISKDNKAIGKLRRECERAKRALSSQ------HQVRVEIESLFDGVDFSEPLTRARFEELNMD 335 (657)
Q Consensus 262 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~------~~~~~~i~~l~~~~~~~~~itr~~fe~~~~~ 335 (657)
..|+.-|. .+. ..||++|..+... .+..+.++...+ +....+||..+.+++++
T Consensus 240 ~DIa~~l~--------t~~-----------~~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~--~~~~~~t~~~ls~II~a 298 (418)
T COG0849 240 KDIAKGLK--------TPF-----------EEAERIKIKYGSALISLADDEETIEVPSVGS--DIPRQVTRSELSEIIEA 298 (418)
T ss_pred HHHHHHhC--------CCH-----------HHHHHHHHHcCccccCcCCCcceEecccCCC--cccchhhHHHHHHHHHh
Confidence 99987742 121 7899999887433 344566665433 33778999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCC--C----------CCCchhhhHhHHHHH
Q 006194 336 LFKKTMGPVKKALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPS--K----------GINPDEAVAHGAAVQ 403 (657)
Q Consensus 336 ~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~--~----------~~~~~~ava~GAa~~ 403 (657)
.+++++..++..|++.+....-...|+|+||++.+|.+.+..++.| +.++. . ..+|..+.|.|..++
T Consensus 299 R~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if-~~~vRig~P~~~~Gl~d~~~~p~fs~avGl~~~ 377 (418)
T COG0849 299 RVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIF-GRPVRLGVPLNIVGLTDIARNPAFSTAVGLLLY 377 (418)
T ss_pred hHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhc-CCceEeCCCccccCchhhccCchhhhhHHHHHH
Confidence 9999999999999999997666799999999999999999999999 44321 1 236889999999999
Q ss_pred Hhhh
Q 006194 404 GGIL 407 (657)
Q Consensus 404 a~~~ 407 (657)
+...
T Consensus 378 ~~~~ 381 (418)
T COG0849 378 GALM 381 (418)
T ss_pred Hhhc
Confidence 8753
No 33
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.68 E-value=1.5e-16 Score=142.83 Aligned_cols=197 Identities=26% Similarity=0.384 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeecchhHHHHHHhccccCCCcceEEEEEecC
Q 006194 150 MILQKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEMNILVYDLGG 229 (657)
Q Consensus 150 ~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gg 229 (657)
.+.+++++.+++++|..+.+..-++|..-.+...+...+..+.||++++..++||+|||.-.+++.. .|+|+||
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~dg------~VVDiGG 149 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDDG------GVVDIGG 149 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCCC------cEEEeCC
Confidence 4678899999999999999999999988766677777888899999999999999999987766544 5899999
Q ss_pred CeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHccCCceeEE
Q 006194 230 GTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFIKLIKKKYNKDISKDNKAIGKLRRECERAKRALSSQHQVRV 309 (657)
Q Consensus 230 gt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~ 309 (657)
||+-+++++-.+-. +..|..-||.+++..|+-. |++++ ++||..|..--..
T Consensus 150 GTTGIsi~kkGkVi-----y~ADEpTGGtHmtLvlAG~--------ygi~~-----------EeAE~~Kr~~k~~----- 200 (277)
T COG4820 150 GTTGISIVKKGKVI-----YSADEPTGGTHMTLVLAGN--------YGISL-----------EEAEQYKRGHKKG----- 200 (277)
T ss_pred CcceeEEEEcCcEE-----EeccCCCCceeEEEEEecc--------cCcCH-----------hHHHHhhhccccc-----
Confidence 99999999865433 3566889999998877644 55544 6777776532111
Q ss_pred EEeeccCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCC
Q 006194 310 EIESLFDGVDFSEPLTRARFEELNMDLFKKTMGPVKKALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKG 389 (657)
Q Consensus 310 ~i~~l~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~ 389 (657)
+|.-..+.|+++++.+.+.+.++..+ +..+.|+||+|.-|.+.+.+++.| +.++..+
T Consensus 201 -----------------~Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l-~l~v~~P 257 (277)
T COG4820 201 -----------------EEIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQL-ALQVHLP 257 (277)
T ss_pred -----------------hhcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHh-ccccccC
Confidence 12234568999999999999988755 566999999999999999999999 8899999
Q ss_pred CCchhhhHhHHHHHH
Q 006194 390 INPDEAVAHGAAVQG 404 (657)
Q Consensus 390 ~~~~~ava~GAa~~a 404 (657)
..|....-+|.|+-+
T Consensus 258 ~~p~y~TPLgIA~sg 272 (277)
T COG4820 258 QHPLYMTPLGIASSG 272 (277)
T ss_pred CCcceechhhhhhcc
Confidence 888887778877643
No 34
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.65 E-value=1.4e-15 Score=161.62 Aligned_cols=302 Identities=18% Similarity=0.155 Sum_probs=187.1
Q ss_pred EEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEEcC----------CceeEcHHHHHHHhhcccchhhHhHHhhCC
Q 006194 35 IGIDLGTTYSCVGVYRNGRVEIIANDQGNRITPSWVAFTD----------TERLIGEAAKNQAALNAERTVFDVKRLIGR 104 (657)
Q Consensus 35 iGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~----------~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~ 104 (657)
|.||+||.++++++..++.+..+ +||+++... ....+|++|...... +
T Consensus 2 iViD~Gs~~~r~G~a~~~~p~~~--------~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~-------------~- 59 (371)
T cd00012 2 VVIDNGSGTIKAGFAGEDAPRVV--------FPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGL-------------G- 59 (371)
T ss_pred EEEECCCCeEEEEeCCCCCCceE--------eeccceeecCcccccccCCCceEEchhhhhCCCC-------------c-
Confidence 78999999999999866643322 366665542 345677766332100 0
Q ss_pred CCCCHHHHhhhccCCeEEeecCCceeEEEEEcCceeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHH
Q 006194 105 KFDDPEVQRDIKFLPYKIVNKGGKPYIQVKVKGETKVFSPEEISAMILQKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQ 184 (657)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~ 184 (657)
..-..|+. +| .+.-.+.+..+++++...... ....-..+++++|..++..+|+
T Consensus 60 ---------~~~~~P~~--------------~G---~i~d~~~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~r~ 112 (371)
T cd00012 60 ---------LELIYPIE--------------HG---IVVDWDDMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSNRE 112 (371)
T ss_pred ---------eEEccccc--------------CC---EEeCHHHHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHHHH
Confidence 00011211 22 122344556666666644211 1223457999999999988888
Q ss_pred HHHH-HHHHcCCceeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHH
Q 006194 185 ATKD-AGIIAGLNVARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHR 263 (657)
Q Consensus 185 ~l~~-Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~ 263 (657)
.+.+ +.+..|++.+.++++|.+|+++++. .+.+|+|+|+++++++.+.- |.. +.......++||.++|+.
T Consensus 113 ~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~i~pv~~--G~~-~~~~~~~~~~GG~~l~~~ 183 (371)
T cd00012 113 KTTEIMFETFNVPALYVAIQAVLSLYASGR------TTGLVVDSGDGVTHVVPVYD--GYV-LPHAIKRLDLAGRDLTRY 183 (371)
T ss_pred HHHHHhhccCCCCEEEEechHHHHHHhcCC------CeEEEEECCCCeeEEEEEEC--CEE-chhhheeccccHHHHHHH
Confidence 8877 5677999999999999999999864 47899999999999887753 322 122234468999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHccCCcee-------------EEE-EeeccCCceeEEEecHHHH
Q 006194 264 VMDYFIKLIKKKYNKDISKDNKAIGKLRRECERAKRALSSQHQV-------------RVE-IESLFDGVDFSEPLTRARF 329 (657)
Q Consensus 264 l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~-------------~~~-i~~l~~~~~~~~~itr~~f 329 (657)
|.+++..... ..+.. .-...++.+|+.+...... ... .-.+.++ ..+.++.+.|
T Consensus 184 l~~~l~~~~~---~~~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~--~~i~~~~er~ 251 (371)
T cd00012 184 LKELLRERGY---ELNSS-------DEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDG--RTIKVGNERF 251 (371)
T ss_pred HHHHHHhcCC---Cccch-------hHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCCC--eEEEEChHHh
Confidence 9998654321 00111 1124466666664321100 000 0011222 2344555443
Q ss_pred ---HHHHHH-----HHHHHHHHHHHHHHHcCCC--CCCcceEEEecCccCcHHHHHHHHhhcCC---------CCCCCCC
Q 006194 330 ---EELNMD-----LFKKTMGPVKKALEDAGLK--KTDIREIVLVGGSTRIPKIQQLLKDFFDG---------KEPSKGI 390 (657)
Q Consensus 330 ---e~~~~~-----~~~~~~~~i~~~l~~~~~~--~~~i~~V~LvGG~sr~p~v~~~l~~~f~~---------~~v~~~~ 390 (657)
|.++.| ....+.+.|.+++..+..+ ..-++.|+|+||+|++|.+.+.|.+.+.. ..+....
T Consensus 252 ~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~ 331 (371)
T cd00012 252 RAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPP 331 (371)
T ss_pred hChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCC
Confidence 123333 1236778888888776432 23358899999999999999999887731 1233456
Q ss_pred CchhhhHhHHHHHHhh
Q 006194 391 NPDEAVAHGAAVQGGI 406 (657)
Q Consensus 391 ~~~~ava~GAa~~a~~ 406 (657)
+|..++-+||+++|..
T Consensus 332 ~~~~~aw~G~si~as~ 347 (371)
T cd00012 332 ERKYSVWLGGSILASL 347 (371)
T ss_pred CccccEEeCchhhcCc
Confidence 8889999999999865
No 35
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.59 E-value=1.6e-14 Score=153.65 Aligned_cols=299 Identities=19% Similarity=0.170 Sum_probs=182.1
Q ss_pred EEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEEcCC---------ceeEcHHHHHHHhhcccchhhHhHHhhCC
Q 006194 34 VIGIDLGTTYSCVGVYRNGRVEIIANDQGNRITPSWVAFTDT---------ERLIGEAAKNQAALNAERTVFDVKRLIGR 104 (657)
Q Consensus 34 viGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~---------~~~~G~~A~~~~~~~p~~~~~~~k~~lg~ 104 (657)
.|+||+||.++++++..+..|.++ +||+++...+ ..++|++|.... +.
T Consensus 3 ~iviD~Gs~~~k~G~~~~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~---------------~~ 59 (373)
T smart00268 3 AIVIDNGSGTIKAGFAGEDEPQVV--------FPSIVGRPKDGKGMVGDAKDTFVGDEAQEKR---------------GG 59 (373)
T ss_pred eEEEECCCCcEEEeeCCCCCCcEE--------ccceeeEecccccccCCCcceEecchhhhcC---------------CC
Confidence 699999999999999866555443 4888876532 245677662210 00
Q ss_pred CCCCHHHHhhhccCCeEEeecCCceeEEEEEcCceeEeCHHHHHHHHHHHHHHHHHHHhCC--CCCcEEEEeCCCCCHHH
Q 006194 105 KFDDPEVQRDIKFLPYKIVNKGGKPYIQVKVKGETKVFSPEEISAMILQKMKETAEAYLGK--KIKDAVVTVPAYFNDAQ 182 (657)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~--~~~~~vitVPa~~~~~q 182 (657)
. .-..|+. +| .+.-.+.+..+++++... .++. .-..+++|+|...+..+
T Consensus 60 ~---------~~~~P~~--------------~G---~i~d~~~~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~~~~~ 110 (373)
T smart00268 60 L---------ELKYPIE--------------HG---IVENWDDMEKIWDYTFFN---ELRVEPEEHPVLLTEPPMNPKSN 110 (373)
T ss_pred c---------eecCCCc--------------CC---EEeCHHHHHHHHHHHHhh---hcCCCCccCeeEEecCCCCCHHH
Confidence 0 0011211 12 223356667777777764 2222 23578999999998999
Q ss_pred HHHHHHHH-HHcCCceeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhh
Q 006194 183 RQATKDAG-IIAGLNVARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFD 261 (657)
Q Consensus 183 r~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d 261 (657)
|+.+.+.+ +..|++.+.++.+|.+|+++++ ..+.+|+|+|+++++++.+. +|.. +........+||.++|
T Consensus 111 r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g------~~~~lVVDiG~~~t~v~pv~--~G~~-~~~~~~~~~~GG~~l~ 181 (373)
T smart00268 111 REKILEIMFETFNFPALYIAIQAVLSLYASG------RTTGLVIDSGDGVTHVVPVV--DGYV-LPHAIKRIDIAGRDLT 181 (373)
T ss_pred HHHHHHHhhccCCCCeEEEeccHHHHHHhCC------CCEEEEEecCCCcceEEEEE--CCEE-chhhheeccCcHHHHH
Confidence 99998876 5779999999999999999986 45789999999999999886 3322 2222233689999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHccCCc-------------------eeEEEEeeccCCceeEE
Q 006194 262 HRVMDYFIKLIKKKYNKDISKDNKAIGKLRRECERAKRALSSQH-------------------QVRVEIESLFDGVDFSE 322 (657)
Q Consensus 262 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~-------------------~~~~~i~~l~~~~~~~~ 322 (657)
+.|.+++...-. ++ ... .-...++.+|+.+.... ...+. +.++..+.+
T Consensus 182 ~~l~~~l~~~~~-~~--~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---lpdg~~~~~ 248 (373)
T smart00268 182 DYLKELLSERGY-QF--NSS-------AEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYE---LPDGNTIKV 248 (373)
T ss_pred HHHHHHHHhcCC-CC--CcH-------HHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEE---CCCCCEEEE
Confidence 999988654100 11 010 11234555555442110 01111 223333333
Q ss_pred EecHHHH-HHHHHHH-----HHHHHHHHHHHHHHcCCC--CCCcceEEEecCccCcHHHHHHHHhhc----CC-C--CCC
Q 006194 323 PLTRARF-EELNMDL-----FKKTMGPVKKALEDAGLK--KTDIREIVLVGGSTRIPKIQQLLKDFF----DG-K--EPS 387 (657)
Q Consensus 323 ~itr~~f-e~~~~~~-----~~~~~~~i~~~l~~~~~~--~~~i~~V~LvGG~sr~p~v~~~l~~~f----~~-~--~v~ 387 (657)
...|-.. |.++.|. ...+.+.|.++++.+..+ ..-.+.|+|+||+|++|.+.+.|.+.+ +. . ++.
T Consensus 249 ~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~ 328 (373)
T smart00268 249 GNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVI 328 (373)
T ss_pred ChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEe
Confidence 2222111 1222221 235677777777765432 112367999999999999999988776 21 1 233
Q ss_pred CCCCchhhhHhHHHHHHhh
Q 006194 388 KGINPDEAVAHGAAVQGGI 406 (657)
Q Consensus 388 ~~~~~~~ava~GAa~~a~~ 406 (657)
.+.++..++=.||+++|..
T Consensus 329 ~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 329 APPERKYSVWLGGSILASL 347 (373)
T ss_pred cCCCCccceEeCcccccCc
Confidence 3345567777888887754
No 36
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.57 E-value=4.5e-13 Score=139.38 Aligned_cols=209 Identities=16% Similarity=0.190 Sum_probs=136.0
Q ss_pred CCCcEE--EEeCCCCCHHH-HHHHHHHHHHc------C------CceeeecchhHHHHHHhccccC-------CCcceEE
Q 006194 166 KIKDAV--VTVPAYFNDAQ-RQATKDAGIIA------G------LNVARIINEPTAAAIAYGLDKK-------GGEMNIL 223 (657)
Q Consensus 166 ~~~~~v--itVPa~~~~~q-r~~l~~Aa~~A------G------l~~~~li~Ep~Aaal~y~~~~~-------~~~~~vl 223 (657)
.+.+++ ...|..+-..+ ++.+++..... | +..+.++++|.+|.+.+..+.. .....++
T Consensus 109 ~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~il 188 (344)
T PRK13917 109 EVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVS 188 (344)
T ss_pred CcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEE
Confidence 444454 47897764344 36666654221 1 2336679999999888766432 1345789
Q ss_pred EEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHccC
Q 006194 224 VYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFIKLIKKKYNKDISKDNKAIGKLRRECERAKRALSS 303 (657)
Q Consensus 224 v~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~ 303 (657)
|+|+|+||+|++++. ++.+. ....+....|..++.+.|.+++... .++..+. . ..++++ |..
T Consensus 189 vIDIG~~TtD~~v~~--~~~~~-~~~s~s~~~G~~~~~~~I~~~i~~~---~~~~~~~--~-------~~ie~~---l~~ 250 (344)
T PRK13917 189 VIDFGSGTTDLDTIQ--NLKRV-EEESFVIPKGTIDVYKRIASHISKK---EEGASIT--P-------YMLEKG---LEY 250 (344)
T ss_pred EEEcCCCcEEEEEEe--CcEEc-ccccccccchHHHHHHHHHHHHHhh---CCCCCCC--H-------HHHHHH---HHc
Confidence 999999999999986 33332 2334447789999888888775322 2333332 1 122222 211
Q ss_pred CceeEEEEeeccCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCC
Q 006194 304 QHQVRVEIESLFDGVDFSEPLTRARFEELNMDLFKKTMGPVKKALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDG 383 (657)
Q Consensus 304 ~~~~~~~i~~l~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~ 383 (657)
. .+.+ ..+..+ .+ ++++.++++++++++...+...+.. ..+++.|+|+||++++ +++.|++.|+.
T Consensus 251 g---~i~~---~~~~~i--d~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~ 315 (344)
T PRK13917 251 G---ACKL---NQKTVI--DF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSD 315 (344)
T ss_pred C---cEEe---CCCceE--eh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCC
Confidence 1 1111 111122 22 4567778999999998888888753 3478999999999986 88999999964
Q ss_pred CCCCCCCCchhhhHhHHHHHHhhhcC
Q 006194 384 KEPSKGINPDEAVAHGAAVQGGILSG 409 (657)
Q Consensus 384 ~~v~~~~~~~~ava~GAa~~a~~~~~ 409 (657)
+....||..|.|+|...+|..+.+
T Consensus 316 --~~~~~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 316 --VEKADESQFANVRGYYKYGELLKN 339 (344)
T ss_pred --eEEcCChHHHHHHHHHHHHHHHhc
Confidence 345579999999999999986654
No 37
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.46 E-value=5e-12 Score=135.87 Aligned_cols=224 Identities=15% Similarity=0.098 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHH-HHcCCceeeecchhHHHHHHhccccCC----C
Q 006194 144 PEEISAMILQKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKDAG-IIAGLNVARIINEPTAAAIAYGLDKKG----G 218 (657)
Q Consensus 144 ~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~----~ 218 (657)
-.+.+..+++++..... .....-..+++|.|..++..+|+.+.+.+ +..+.+.+.+..+|.++++++...... .
T Consensus 80 dwd~~e~l~~~~~~~~L-~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g 158 (414)
T PTZ00280 80 DWDLMEKFWEQCIFKYL-RCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGG 158 (414)
T ss_pred CHHHHHHHHHHHHHHhh-ccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCC
Confidence 35566677776543211 11222346899999999999999888754 556888899999999999887332211 1
Q ss_pred cceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHH
Q 006194 219 EMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFIKLIKKKYNKDISKDNKAIGKLRRECERAK 298 (657)
Q Consensus 219 ~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K 298 (657)
..+-+|+|+|+|+++++-+.- |.. +........+||.++|+.|.+++.+. +..+... .....++.+|
T Consensus 159 ~~tglVVDiG~~~T~i~PV~~--G~~-l~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~~-----~~~~~~~~iK 225 (414)
T PTZ00280 159 TLTGTVIDSGDGVTHVIPVVD--GYV-IGSSIKHIPLAGRDITNFIQQMLRER-----GEPIPAE-----DILLLAQRIK 225 (414)
T ss_pred ceeEEEEECCCCceEEEEEEC--CEE-cccceEEecCcHHHHHHHHHHHHHHc-----CCCCCcH-----HHHHHHHHHH
Confidence 335699999999999987652 322 11122235899999999999986432 1112111 1123466666
Q ss_pred HHccCCc-----------------eeEEEEeeccCCceeEEEecHHHHH---HHHHHHH------HHHHHHHHHHHHHcC
Q 006194 299 RALSSQH-----------------QVRVEIESLFDGVDFSEPLTRARFE---ELNMDLF------KKTMGPVKKALEDAG 352 (657)
Q Consensus 299 ~~Ls~~~-----------------~~~~~i~~l~~~~~~~~~itr~~fe---~~~~~~~------~~~~~~i~~~l~~~~ 352 (657)
+.++... ...+.++...++....+.+..+.|. -++.|-+ ..+.+.|.+++..+.
T Consensus 226 e~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~ 305 (414)
T PTZ00280 226 EKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCP 305 (414)
T ss_pred HhcCcccCcHHHHHHHhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCC
Confidence 6654211 0112222222233446777777663 3444422 145677777777764
Q ss_pred CC--CCCcceEEEecCccCcHHHHHHHHhhc
Q 006194 353 LK--KTDIREIVLVGGSTRIPKIQQLLKDFF 381 (657)
Q Consensus 353 ~~--~~~i~~V~LvGG~sr~p~v~~~l~~~f 381 (657)
.+ ..-.+.|+|+||+|.+|.+.+.|.+.+
T Consensus 306 ~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El 336 (414)
T PTZ00280 306 IDCRRPLYKNIVLSGGSTMFKGFDKRLQRDV 336 (414)
T ss_pred hhhHHHHhhcEEEeCCcccCcCHHHHHHHHH
Confidence 33 223478999999999999999998877
No 38
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.39 E-value=7.5e-11 Score=124.28 Aligned_cols=179 Identities=16% Similarity=0.173 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHcCCceeeecchhHHHHHHhc-----cccCCCcc-eEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCC
Q 006194 180 DAQRQATKDAGIIAGLNVARIINEPTAAAIAYG-----LDKKGGEM-NILVYDLGGGTFDVSILTIDNGVFEVLATSGDT 253 (657)
Q Consensus 180 ~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~-----~~~~~~~~-~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~ 253 (657)
....+.+.++++.||+++..+..+|.|.+-.+. ........ .++++|+|++++++++++-..-. .....
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~-----~~r~i 216 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRML-----FTREV 216 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEE-----EEEEe
Confidence 456788889999999999999999999877663 22222233 49999999999999999644322 24446
Q ss_pred CCccchhhHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHccCCceeEEEEeeccCCceeEEEecHHHHHHHH
Q 006194 254 HLGGEDFDHRVMDYFIKLIKKKYNKDISKDNKAIGKLRRECERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELN 333 (657)
Q Consensus 254 ~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~l~~~~~~~~~itr~~fe~~~ 333 (657)
.+||.++++.+.+. ++.+. .+||+.|........ .-.+++
T Consensus 217 ~~G~~~i~~~i~~~--------~~~~~-----------~~Ae~~k~~~~~~~~---------------------~~~~~~ 256 (348)
T TIGR01175 217 PFGTRQLTSELSRA--------YGLNP-----------EEAGEAKQQGGLPLL---------------------YDPEVL 256 (348)
T ss_pred echHHHHHHHHHHH--------cCCCH-----------HHHHHHHhcCCCCCc---------------------hhHHHH
Confidence 79999999988754 22222 678888764321110 013456
Q ss_pred HHHHHHHHHHHHHHHHHc--CCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCC-------------------CCCc
Q 006194 334 MDLFKKTMGPVKKALEDA--GLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSK-------------------GINP 392 (657)
Q Consensus 334 ~~~~~~~~~~i~~~l~~~--~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~-------------------~~~~ 392 (657)
++.++++...|.+.++-. ......++.|+|+||+++++.+.+.+++.| +.++.. ..+|
T Consensus 257 ~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l-~~~v~~~~P~~~~~~~~~~~~~~~~~~~~ 335 (348)
T TIGR01175 257 RRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRL-GLPTEVANPFALMALDAKVDAGRLAVDAP 335 (348)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHH-CCCeEecChHHhcccCccCCHHHHHhhhH
Confidence 777778888888887643 223446899999999999999999999999 433221 1245
Q ss_pred hhhhHhHHHHHH
Q 006194 393 DEAVAHGAAVQG 404 (657)
Q Consensus 393 ~~ava~GAa~~a 404 (657)
..++|.|+|+++
T Consensus 336 ~~~~a~Glalr~ 347 (348)
T TIGR01175 336 ALMTALGLALRG 347 (348)
T ss_pred HHHHHhhHhhcC
Confidence 667788887764
No 39
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.37 E-value=2.9e-11 Score=125.22 Aligned_cols=206 Identities=21% Similarity=0.215 Sum_probs=126.7
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHHHHHHc---------CCceeeecchhHHHHHHhccccC---CCcceEEEEEecCCeeE
Q 006194 166 KIKDAVVTVPAYFNDAQRQATKDAGIIA---------GLNVARIINEPTAAAIAYGLDKK---GGEMNILVYDLGGGTFD 233 (657)
Q Consensus 166 ~~~~~vitVPa~~~~~qr~~l~~Aa~~A---------Gl~~~~li~Ep~Aaal~y~~~~~---~~~~~vlv~D~Gggt~d 233 (657)
.+..+|+..|..+-..+++.+++..... -+..+.++++|.+|.+.+..+.. .....++|+|+|++|+|
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 3557899999998888999998876532 23446789999999888765321 14567899999999999
Q ss_pred EEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHccCCceeEEEEee
Q 006194 234 VSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFIKLIKKKYNKDISKDNKAIGKLRRECERAKRALSSQHQVRVEIES 313 (657)
Q Consensus 234 vsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~ 313 (657)
+.++. +..+ +....+....|..++-+.+.+. +.++++.....+.. ..+++ |.......+
T Consensus 181 ~~~~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~----i~~~~g~~~~~~~~-------~i~~~---l~~g~~~~~---- 239 (320)
T TIGR03739 181 WLVAR--GMRL-VQKRSGSVNGGMSDIYRLLAAE----ISKDIGTPAYRDID-------RIDLA---LRTGKQPRI---- 239 (320)
T ss_pred eehcc--CCEE-cccccCCchhHHHHHHHHHHHH----HHhhcCCCCccCHH-------HHHHH---HHhCCceee----
Confidence 97774 4443 3344455677877766666665 44455544111111 11111 111110000
Q ss_pred ccCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCch
Q 006194 314 LFDGVDFSEPLTRARFEELNMDLFKKTMGPVKKALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPD 393 (657)
Q Consensus 314 l~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~ 393 (657)
.+..+ .|+ +.-+.....+..++..+.+.+. ...+++.|+|+||++. .+++.|++.||..++....||.
T Consensus 240 --~gk~~--di~--~~~~~~~~~~~~~v~~i~~~~~----~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp~ 307 (320)
T TIGR03739 240 --YQKPV--DIK--RCLELAETVAQQAVSTMMTWIG----APESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEPM 307 (320)
T ss_pred --cceec--Cch--HHHHHHHHHHHHHHHHHHHhcc----cCCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCcH
Confidence 11111 122 1112233333444433333331 1246899999999987 7789999999765655667999
Q ss_pred hhhHhHHHHHH
Q 006194 394 EAVAHGAAVQG 404 (657)
Q Consensus 394 ~ava~GAa~~a 404 (657)
.|.|+|-..+|
T Consensus 308 ~ANarG~~~~g 318 (320)
T TIGR03739 308 FANVRGFQIAG 318 (320)
T ss_pred HHHHHHHHHhh
Confidence 99999998876
No 40
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.33 E-value=2e-11 Score=127.73 Aligned_cols=203 Identities=20% Similarity=0.256 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHhCCCCCcEEE--------------------EeCCCCCHHHHHHHHHHHHHcCCceeeecchhHHHHHHh
Q 006194 152 LQKMKETAEAYLGKKIKDAVV--------------------TVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAY 211 (657)
Q Consensus 152 L~~l~~~a~~~~~~~~~~~vi--------------------tVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y 211 (657)
-..+...+++++..++.++++ ++| ....+...++++.|||++..+--+|.|.+-.+
T Consensus 91 ~~~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~Aa~----k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~ 166 (340)
T PF11104_consen 91 EEAIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVAAP----KEIVESYVELFEEAGLKPVAVDVEAFALARLF 166 (340)
T ss_dssp HHHHHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEEEE----HHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGG
T ss_pred HHHHHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEEEc----HHHHHHHHHHHHHcCCceEEEeehHHHHHHHH
Confidence 344556677777766655443 223 34567778889999999987777777765555
Q ss_pred cccc----C-CCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHHHHHHHhhcCCCCCCCHHH
Q 006194 212 GLDK----K-GGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFIKLIKKKYNKDISKDNKA 286 (657)
Q Consensus 212 ~~~~----~-~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~ 286 (657)
.... . .....++++|+|+.++.++++.-. .+. ......+||.++++.+++.+ +.+.
T Consensus 167 ~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g--~~~---f~R~i~~G~~~l~~~i~~~~--------~i~~------ 227 (340)
T PF11104_consen 167 EFLEPQLPDEEDAETVALVDIGASSTTVIIFQNG--KPI---FSRSIPIGGNDLTEAIAREL--------GIDF------ 227 (340)
T ss_dssp HHHHHTST----T-EEEEEEE-SS-EEEEEEETT--EEE---EEEEES-SHHHHHHHHHHHT--------T--H------
T ss_pred HHHHHhCCcccccceEEEEEecCCeEEEEEEECC--EEE---EEEEEeeCHHHHHHHHHHhc--------CCCH------
Confidence 4321 1 134579999999999999988633 321 23346899999999998763 2221
Q ss_pred HHHHHHHHHHHHHHccCCceeEEEEeeccCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCCCCcceEEEe
Q 006194 287 IGKLRRECERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNMDLFKKTMGPVKKALED--AGLKKTDIREIVLV 364 (657)
Q Consensus 287 ~~~L~~~~e~~K~~Ls~~~~~~~~i~~l~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~--~~~~~~~i~~V~Lv 364 (657)
.+||+.|..-+... +...+.+.+.++++...|.+.++- .......|+.|+|+
T Consensus 228 -----~~Ae~~k~~~~l~~---------------------~~~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~ 281 (340)
T PF11104_consen 228 -----EEAEELKRSGGLPE---------------------EYDQDALRPFLEELAREIRRSLDFYQSQSGGESIERIYLS 281 (340)
T ss_dssp -----HHHHHHHHHT---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH------SEEEEE
T ss_pred -----HHHHHHHhcCCCCc---------------------chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEE
Confidence 56676665421110 233566777888888888888773 23345679999999
Q ss_pred cCccCcHHHHHHHHhhcCCCCCC---------CCC----------CchhhhHhHHHHHH
Q 006194 365 GGSTRIPKIQQLLKDFFDGKEPS---------KGI----------NPDEAVAHGAAVQG 404 (657)
Q Consensus 365 GG~sr~p~v~~~l~~~f~~~~v~---------~~~----------~~~~ava~GAa~~a 404 (657)
||+++++.+.+.|++.+ +.++. .+. .|..++|.|.|+.+
T Consensus 282 Ggga~l~gL~~~l~~~l-~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~avA~GLAlR~ 339 (340)
T PF11104_consen 282 GGGARLPGLAEYLSEEL-GIPVEVINPFKNIKLDPKINSEYLQEDAPQFAVALGLALRG 339 (340)
T ss_dssp SGGGGSTTHHHHHHHHH-TSEEEE--GGGGSB--TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchhhHHHHHHHHH-CCceEEcChHHhCccCcccChhhhhhhhhHHHHHHHHhhcC
Confidence 99999999999999998 43321 111 25679999999874
No 41
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.31 E-value=9.4e-12 Score=133.53 Aligned_cols=310 Identities=18% Similarity=0.199 Sum_probs=178.3
Q ss_pred eEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEEcCC-----ceeEcHHHHHHHhhcccchhhHhHHhhCCCCC
Q 006194 33 TVIGIDLGTTYSCVGVYRNGRVEIIANDQGNRITPSWVAFTDT-----ERLIGEAAKNQAALNAERTVFDVKRLIGRKFD 107 (657)
Q Consensus 33 ~viGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-----~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~ 107 (657)
.+|-||+|+.++++++..+..|..+ +||++..... ...+|..+... .+...+
T Consensus 5 ~~vViD~Gs~~~k~G~age~~P~~v--------~ps~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~------------ 61 (393)
T PF00022_consen 5 KPVVIDNGSSTIKAGFAGEDLPRVV--------IPSVVGRPRDKNSSNDYYVGDEALSP---RSNLEL------------ 61 (393)
T ss_dssp SEEEEEECSSEEEEEETTSSS-SEE--------EESEEEEESSSSSSSSCEETHHHHHT---GTGEEE------------
T ss_pred CEEEEECCCceEEEEECCCCCCCCc--------CCCccccccccccceeEEeecccccc---hhheee------------
Confidence 5799999999999999755545433 4888776543 35677763220 000000
Q ss_pred CHHHHhhhccCCeEEeecCCceeEEEEEcCceeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHH
Q 006194 108 DPEVQRDIKFLPYKIVNKGGKPYIQVKVKGETKVFSPEEISAMILQKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATK 187 (657)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~ 187 (657)
..|+ -+| .+.-.+.+..+++++..... .....-..++++.|..++...|+.+.
T Consensus 62 ---------~~p~--------------~~g---~i~~~~~~e~i~~~~~~~~l-~~~~~~~~vll~~~~~~~~~~r~~l~ 114 (393)
T PF00022_consen 62 ---------RSPI--------------ENG---VIVDWDALEEIWDYIFSNLL-KVDPSDHPVLLTEPPFNPRSQREKLA 114 (393)
T ss_dssp ---------EESE--------------ETT---EESSHHHHHHHHHHHHHTTT--SSGGGSEEEEEESTT--HHHHHHHH
T ss_pred ---------eeec--------------ccc---cccccccccccccccccccc-ccccccceeeeeccccCCchhhhhhh
Confidence 0011 022 23334556666666665431 11223446899999999999998887
Q ss_pred HH-HHHcCCceeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHH
Q 006194 188 DA-GIIAGLNVARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMD 266 (657)
Q Consensus 188 ~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 266 (657)
+. .+..|++.+.++.++.+|+++++.. +-+|+|+|.+.+.++-+. +|.. +........+||.++++.|.+
T Consensus 115 e~lfE~~~~~~v~~~~~~~~a~~~~g~~------tglVVD~G~~~t~v~pV~--dG~~-~~~~~~~~~~GG~~lt~~l~~ 185 (393)
T PF00022_consen 115 EILFEKFGVPSVYFIPSPLLALYASGRT------TGLVVDIGYSSTSVVPVV--DGYV-LPHSIKRSPIGGDDLTEYLKE 185 (393)
T ss_dssp HHHHHTS--SEEEEEEHHHHHHHHTTBS------SEEEEEESSS-EEEEEEE--TTEE--GGGBEEES-SHHHHHHHHHH
T ss_pred hhhhcccccceeeeeecccccccccccc------cccccccceeeeeeeeee--eccc-cccccccccccHHHHHHHHHH
Confidence 75 5678999999999999999988744 458999999999887763 3322 111222357999999999998
Q ss_pred HHHHHH-H--hhcCCCCC----CCHHHHHHHHHHHHHHHHHc---------------cCCceeEEEEeeccCCceeEEEe
Q 006194 267 YFIKLI-K--KKYNKDIS----KDNKAIGKLRRECERAKRAL---------------SSQHQVRVEIESLFDGVDFSEPL 324 (657)
Q Consensus 267 ~l~~~~-~--~~~~~~~~----~~~~~~~~L~~~~e~~K~~L---------------s~~~~~~~~i~~l~~~~~~~~~i 324 (657)
.+.++- . ..+..... ...-....-...++.+|+.+ .......+.++ ++. .+.+
T Consensus 186 lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lP---dg~--~i~~ 260 (393)
T PF00022_consen 186 LLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYELP---DGQ--TIIL 260 (393)
T ss_dssp HHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-T---TSS--EEEE
T ss_pred HHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceecccc---ccc--cccc
Confidence 877631 0 00000000 00000011122333344332 11222333333 333 4455
Q ss_pred cHHHHHHHHHHHHH----------------HHHHHHHHHHHHcCCCC--CCcceEEEecCccCcHHHHHHHHhhcCC---
Q 006194 325 TRARFEELNMDLFK----------------KTMGPVKKALEDAGLKK--TDIREIVLVGGSTRIPKIQQLLKDFFDG--- 383 (657)
Q Consensus 325 tr~~fe~~~~~~~~----------------~~~~~i~~~l~~~~~~~--~~i~~V~LvGG~sr~p~v~~~l~~~f~~--- 383 (657)
..+.| .+.+.++. .+.+.|.+++..+..+. .-.+.|+|+||+|++|.+.+.|.+.+..
T Consensus 261 ~~er~-~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~ 339 (393)
T PF00022_consen 261 GKERF-RIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLP 339 (393)
T ss_dssp STHHH-HHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSG
T ss_pred ccccc-cccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHhhhhhh
Confidence 55444 22333332 57777888887764331 1147899999999999999999877622
Q ss_pred ----CCCCCCC-CchhhhHhHHHHHHhhh
Q 006194 384 ----KEPSKGI-NPDEAVAHGAAVQGGIL 407 (657)
Q Consensus 384 ----~~v~~~~-~~~~ava~GAa~~a~~~ 407 (657)
.++.... ++..++=.||+++|..-
T Consensus 340 ~~~~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 340 SSTKVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp TTSTEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred ccccceeccCchhhhhcccccceeeeccc
Confidence 1233344 78899999999999754
No 42
>PTZ00452 actin; Provisional
Probab=99.29 E-value=1.5e-10 Score=122.38 Aligned_cols=301 Identities=17% Similarity=0.170 Sum_probs=177.4
Q ss_pred CeEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEEcCC----------ceeEcHHHHHHHhhcccchhhHhHHh
Q 006194 32 GTVIGIDLGTTYSCVGVYRNGRVEIIANDQGNRITPSWVAFTDT----------ERLIGEAAKNQAALNAERTVFDVKRL 101 (657)
Q Consensus 32 ~~viGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~----------~~~~G~~A~~~~~~~p~~~~~~~k~~ 101 (657)
...|-||+|+.++++++..+..|.++ +||+|..... ..++|++|.... . ...+
T Consensus 5 ~~~vViD~Gs~~~k~G~age~~P~~i--------~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~-----~-~~~l--- 67 (375)
T PTZ00452 5 YPAVVIDNGSGYCKIGIAGDDAPTSC--------FPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKR-----G-VLAI--- 67 (375)
T ss_pred CCEEEEECCCCeEEEeeCCCCCcCEE--------ecceeEEECCccccccccccceEEChhhhccc-----c-CcEE---
Confidence 45799999999999999966655543 3666665322 234555542100 0 0000
Q ss_pred hCCCCCCHHHHhhhccCCeEEeecCCceeEEEEEcCceeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHH
Q 006194 102 IGRKFDDPEVQRDIKFLPYKIVNKGGKPYIQVKVKGETKVFSPEEISAMILQKMKETAEAYLGKKIKDAVVTVPAYFNDA 181 (657)
Q Consensus 102 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~ 181 (657)
..|.. +| .+.-.+.+..+++|+....- .....-..+++|-|...+..
T Consensus 68 ---------------~~Pi~--------------~G---~I~dwd~~e~iw~~~f~~~l-~v~p~~~pvlitE~~~~~~~ 114 (375)
T PTZ00452 68 ---------------KEPIQ--------------NG---IINSWDDIEIIWHHAFYNEL-CMSPEDQPVFMTDAPMNSKF 114 (375)
T ss_pred ---------------cccCc--------------CC---EEcCHHHHHHHHHHHHHhhc-CCCcccCceeeecCCCCCHH
Confidence 01110 22 23334555566666643211 12223457889999999999
Q ss_pred HHHHHHHH-HHHcCCceeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchh
Q 006194 182 QRQATKDA-GIIAGLNVARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDF 260 (657)
Q Consensus 182 qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~ 260 (657)
+|+.+.+. .+..+.+.+.+.+.+.+++++++. .+-+|+|+|.+.++++-+. +|.. +.......++||.++
T Consensus 115 ~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~------~tglVVDiG~~~t~v~PV~--dG~~-l~~~~~r~~~gG~~l 185 (375)
T PTZ00452 115 NRERMTQIMFETFNTPCLYISNEAVLSLYTSGK------TIGLVVDSGEGVTHCVPVF--EGHQ-IPQAITKINLAGRLC 185 (375)
T ss_pred HHHHHHHHHhhccCCceEEEechHHHHHHHCCC------ceeeeecCCCCcceEEEEE--CCEE-eccceEEeeccchHH
Confidence 99988775 466788888899999999988753 3569999999999987664 3322 112223357999999
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHccCCc----------------eeEEEEeeccCCceeEEEe
Q 006194 261 DHRVMDYFIKLIKKKYNKDISKDNKAIGKLRRECERAKRALSSQH----------------QVRVEIESLFDGVDFSEPL 324 (657)
Q Consensus 261 d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----------------~~~~~i~~l~~~~~~~~~i 324 (657)
++-|.+.|.+. +....... . ...++.+|+.++... ...+. +-+|. .+.+
T Consensus 186 t~~L~~lL~~~-----~~~~~~~~-~----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~---LPDg~--~i~l 250 (375)
T PTZ00452 186 TDYLTQILQEL-----GYSLTEPH-Q----RIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYK---LPDGN--ILTI 250 (375)
T ss_pred HHHHHHHHHhc-----CCCCCCHH-H----HHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEE---CCCCC--EEEe
Confidence 99888876431 11121110 0 122444555543211 11122 22333 3455
Q ss_pred cHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCC--CCCcceEEEecCccCcHHHHHHHHhhc----CC-C--CCC
Q 006194 325 TRARF---EELNMDLF-----KKTMGPVKKALEDAGLK--KTDIREIVLVGGSTRIPKIQQLLKDFF----DG-K--EPS 387 (657)
Q Consensus 325 tr~~f---e~~~~~~~-----~~~~~~i~~~l~~~~~~--~~~i~~V~LvGG~sr~p~v~~~l~~~f----~~-~--~v~ 387 (657)
..+.| |-+++|-+ ..+.+.+.+++..+..+ ..-.+.|+|+||+|.+|.+.+.|.+.+ +. . ++.
T Consensus 251 ~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~ 330 (375)
T PTZ00452 251 KSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVA 330 (375)
T ss_pred ehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEe
Confidence 66655 23334432 23566777777765432 223478999999999999999988766 21 1 123
Q ss_pred CCCCchhhhHhHHHHHHhh
Q 006194 388 KGINPDEAVAHGAAVQGGI 406 (657)
Q Consensus 388 ~~~~~~~ava~GAa~~a~~ 406 (657)
.+.++..++=.|++++|..
T Consensus 331 ~~~~r~~~aW~GgSilasl 349 (375)
T PTZ00452 331 APPDRRFSAWIGGSIQCTL 349 (375)
T ss_pred cCCCcceeEEECchhhcCc
Confidence 3345556777888888753
No 43
>PTZ00004 actin-2; Provisional
Probab=99.26 E-value=2.1e-10 Score=121.72 Aligned_cols=234 Identities=15% Similarity=0.101 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHHHHHHHhC--CCCCcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeeecchhHHHHHHhccccCCCcce
Q 006194 145 EEISAMILQKMKETAEAYLG--KKIKDAVVTVPAYFNDAQRQATKD-AGIIAGLNVARIINEPTAAAIAYGLDKKGGEMN 221 (657)
Q Consensus 145 ~el~~~~L~~l~~~a~~~~~--~~~~~~vitVPa~~~~~qr~~l~~-Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~ 221 (657)
.+.+..+++|+.. ..++ ..-..+++|.|..++..+|+.+.+ ..+..|++.+.+..+|.+++++++. .+
T Consensus 80 ~d~~e~i~~~~~~---~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~------~t 150 (378)
T PTZ00004 80 WDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR------TT 150 (378)
T ss_pred HHHHHHHHHHHHH---hhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC------ce
Confidence 4555667776432 1222 233467889999999999987766 4567899999999999999988753 35
Q ss_pred EEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHc
Q 006194 222 ILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFIKLIKKKYNKDISKDNKAIGKLRRECERAKRAL 301 (657)
Q Consensus 222 vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~L 301 (657)
-+|+|+|++.++++-+. +|.. +.......++||.++++.|.+.+... +..+... . -...++.+|+.+
T Consensus 151 glVVDiG~~~t~v~pV~--dG~~-l~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~~--~---~~~~~~~iKe~~ 217 (378)
T PTZ00004 151 GIVLDSGDGVSHTVPIY--EGYS-LPHAIHRLDVAGRDLTEYMMKILHER-----GTTFTTT--A---EKEIVRDIKEKL 217 (378)
T ss_pred EEEEECCCCcEEEEEEE--CCEE-eecceeeecccHHHHHHHHHHHHHhc-----CCCCCcH--H---HHHHHHHHhhcc
Confidence 69999999999987664 2322 22223346799999999999886432 1111111 0 112344555544
Q ss_pred cCCc-----------------eeEEEEeeccCCceeEEEecHHHH---HHHHHHH------HHHHHHHHHHHHHHcCCC-
Q 006194 302 SSQH-----------------QVRVEIESLFDGVDFSEPLTRARF---EELNMDL------FKKTMGPVKKALEDAGLK- 354 (657)
Q Consensus 302 s~~~-----------------~~~~~i~~l~~~~~~~~~itr~~f---e~~~~~~------~~~~~~~i~~~l~~~~~~- 354 (657)
.... ...+. +.++.. +.+..+.| |-++.|- ...+.+.|.+++..+..+
T Consensus 218 c~v~~d~~~~~~~~~~~~~~~~~~y~---lPdg~~--i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~ 292 (378)
T PTZ00004 218 CYIALDFDEEMGNSAGSSDKYEESYE---LPDGTI--ITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDI 292 (378)
T ss_pred eeecCCHHHHHhhhhcCccccceEEE---CCCCCE--EEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhH
Confidence 2110 11122 223333 34455544 2344443 234567777777776433
Q ss_pred -CCCcceEEEecCccCcHHHHHHHHhhc----CC---CCCCCCCCchhhhHhHHHHHHh
Q 006194 355 -KTDIREIVLVGGSTRIPKIQQLLKDFF----DG---KEPSKGINPDEAVAHGAAVQGG 405 (657)
Q Consensus 355 -~~~i~~V~LvGG~sr~p~v~~~l~~~f----~~---~~v~~~~~~~~ava~GAa~~a~ 405 (657)
..-...|+|+||+|.+|.+.+.|...+ +. .++..+.++..++=+||+++|.
T Consensus 293 r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 293 RKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred HHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 222478999999999999999988766 21 1233344566777788888875
No 44
>PTZ00281 actin; Provisional
Probab=99.25 E-value=1.6e-10 Score=122.40 Aligned_cols=238 Identities=15% Similarity=0.112 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeeecchhHHHHHHhccccCCCcceE
Q 006194 144 PEEISAMILQKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKD-AGIIAGLNVARIINEPTAAAIAYGLDKKGGEMNI 222 (657)
Q Consensus 144 ~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~-Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~v 222 (657)
-.+.+..+++++....- .....-..+++|-|..++..+|+.+.+ ..+..+++.+.+...|.+++++++. .+-
T Consensus 79 dwd~~e~l~~~~f~~~l-~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~------~tg 151 (376)
T PTZ00281 79 NWDDMEKIWHHTFYNEL-RVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR------TTG 151 (376)
T ss_pred CHHHHHHHHHHHHHhhc-cCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC------ceE
Confidence 34555566666553210 112233468889999999999998887 5567888889999999999988753 356
Q ss_pred EEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcc
Q 006194 223 LVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFIKLIKKKYNKDISKDNKAIGKLRRECERAKRALS 302 (657)
Q Consensus 223 lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls 302 (657)
+|+|+|.+.+.++-+.-. .. +.......++||.++++.|.+.|... +..... ... ...++.+|+.++
T Consensus 152 lVVDiG~~~t~v~PV~dG--~~-~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~-~~~----~~~~~~iKe~~c 218 (376)
T PTZ00281 152 IVMDSGDGVSHTVPIYEG--YA-LPHAILRLDLAGRDLTDYMMKILTER-----GYSFTT-TAE----REIVRDIKEKLA 218 (376)
T ss_pred EEEECCCceEEEEEEEec--cc-chhheeeccCcHHHHHHHHHHHHHhc-----CCCCCc-HHH----HHHHHHHHHhcE
Confidence 999999999998755432 11 12223336899999999988876432 111111 000 133556666643
Q ss_pred CCc----------------eeEEEEeeccCCceeEEEecHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCC--CC
Q 006194 303 SQH----------------QVRVEIESLFDGVDFSEPLTRARF---EELNMDLF-----KKTMGPVKKALEDAGLK--KT 356 (657)
Q Consensus 303 ~~~----------------~~~~~i~~l~~~~~~~~~itr~~f---e~~~~~~~-----~~~~~~i~~~l~~~~~~--~~ 356 (657)
... ...+. +-++. .+.+..+.| |-++.|-+ ..+.+.|.+++..+..+ ..
T Consensus 219 ~v~~d~~~~~~~~~~~~~~~~~y~---LPdg~--~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~ 293 (376)
T PTZ00281 219 YVALDFEAEMQTAASSSALEKSYE---LPDGQ--VITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKD 293 (376)
T ss_pred EecCCchHHHHhhhcCcccceeEE---CCCCC--EEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHH
Confidence 211 01111 22333 344555444 33444422 24566777777765432 12
Q ss_pred CcceEEEecCccCcHHHHHHHHhhc----CC---CCCCCCCCchhhhHhHHHHHHhh
Q 006194 357 DIREIVLVGGSTRIPKIQQLLKDFF----DG---KEPSKGINPDEAVAHGAAVQGGI 406 (657)
Q Consensus 357 ~i~~V~LvGG~sr~p~v~~~l~~~f----~~---~~v~~~~~~~~ava~GAa~~a~~ 406 (657)
-.+.|+|+||+|.+|.+.+.|.+.+ +. .++..+.++..++=+|++++|..
T Consensus 294 L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilasl 350 (376)
T PTZ00281 294 LYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASL 350 (376)
T ss_pred HHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCCCceeEEECcccccCc
Confidence 2478999999999999999887766 21 12333446677888899888863
No 45
>PTZ00466 actin-like protein; Provisional
Probab=99.19 E-value=7.6e-10 Score=117.06 Aligned_cols=238 Identities=14% Similarity=0.075 Sum_probs=146.4
Q ss_pred eCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHH-HHHcCCceeeecchhHHHHHHhccccCCCcc
Q 006194 142 FSPEEISAMILQKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKDA-GIIAGLNVARIINEPTAAAIAYGLDKKGGEM 220 (657)
Q Consensus 142 ~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~ 220 (657)
+.-.+.+..+++++.+... ....-..+++|-|..++..+|+.+.+. .+..+++.+.+.+.|.+++++++. .
T Consensus 83 v~dwd~~e~iw~~~f~~l~--v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~------~ 154 (380)
T PTZ00466 83 IENWNDMENIWIHVYNSMK--INSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK------T 154 (380)
T ss_pred ECCHHHHHHHHHHHHhhcc--cCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC------c
Confidence 3445566667777653211 122344678899999999999988664 566788888999999999988763 3
Q ss_pred eEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 006194 221 NILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFIKLIKKKYNKDISKDNKAIGKLRRECERAKRA 300 (657)
Q Consensus 221 ~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ 300 (657)
+-+|+|+|.+.+.++-+. +|.. +.......++||.++++.|.+.+.+. +..... . .-...++.+|+.
T Consensus 155 tglVVD~G~~~t~v~PV~--~G~~-~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~-~----~~~~~v~~iKe~ 221 (380)
T PTZ00466 155 NGTVLDCGDGVCHCVSIY--EGYS-ITNTITRTDVAGRDITTYLGYLLRKN-----GHLFNT-S----AEMEVVKNMKEN 221 (380)
T ss_pred eEEEEeCCCCceEEEEEE--CCEE-eecceeEecCchhHHHHHHHHHHHhc-----CCCCCc-H----HHHHHHHHHHHh
Confidence 669999999999987654 3322 22223336899999999988876421 111111 0 112334555655
Q ss_pred ccCCc---------------eeEEEEeeccCCceeEEEecHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCC--C
Q 006194 301 LSSQH---------------QVRVEIESLFDGVDFSEPLTRARF---EELNMDLF-----KKTMGPVKKALEDAGLK--K 355 (657)
Q Consensus 301 Ls~~~---------------~~~~~i~~l~~~~~~~~~itr~~f---e~~~~~~~-----~~~~~~i~~~l~~~~~~--~ 355 (657)
++... ...+. +.+|. .+.+..+.| |-++.|-+ ..+.+.|.+++..+..+ .
T Consensus 222 ~c~v~~d~~~e~~~~~~~~~~~~y~---LPdg~--~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~ 296 (380)
T PTZ00466 222 CCYVSFNMNKEKNSSEKALTTLPYI---LPDGS--QILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRR 296 (380)
T ss_pred CeEecCChHHHHhhccccccceeEE---CCCCc--EEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHH
Confidence 43110 01122 22333 344555555 23344322 24556677777765433 2
Q ss_pred CCcceEEEecCccCcHHHHHHHHhhcCC-----C--CCCCCCCchhhhHhHHHHHHh
Q 006194 356 TDIREIVLVGGSTRIPKIQQLLKDFFDG-----K--EPSKGINPDEAVAHGAAVQGG 405 (657)
Q Consensus 356 ~~i~~V~LvGG~sr~p~v~~~l~~~f~~-----~--~v~~~~~~~~ava~GAa~~a~ 405 (657)
.-...|+|+||+|.+|.+.+.|.+.+.. . ++..+.++..++=+||+++|.
T Consensus 297 ~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 297 TLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred HHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 2347899999999999999999877621 1 233344556677788888875
No 46
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=99.09 E-value=2.6e-10 Score=117.80 Aligned_cols=174 Identities=20% Similarity=0.273 Sum_probs=97.1
Q ss_pred ceeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHHHHHHHhh
Q 006194 196 NVARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFIKLIKKK 275 (657)
Q Consensus 196 ~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~ 275 (657)
..+.+++|+.||.+.+..... +...++|+|+||+|+|++++.- +.-.+-...+...+|-..+-..+.+.+..
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~~-~~~~~lVVDIGG~T~Dv~~v~~--~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~----- 212 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDLD-EDESVLVVDIGGRTTDVAVVRG--GLPDISKCSGTPEIGVSDLYDAIAQALRS----- 212 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS--TTSEEEEEEE-SS-EEEEEEEG--GG--EEEEEEETTSSTHHHHHHHHHHTT------
T ss_pred eeEEEEcccHHHHHHHHHhhc-ccCcEEEEEcCCCeEEeeeecC--CccccchhccCCchhHHHHHHHHHHHHHH-----
Confidence 356789999999998865533 2457999999999999998862 21122234455678888877777666433
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHccCCceeEEEEeeccCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 006194 276 YNKDISKDNKAIGKLRRECERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNMDLFKKTMGPVKKALEDAGLKK 355 (657)
Q Consensus 276 ~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~l~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~ 355 (657)
.+... +......+..... -+..++. ...+. -..+++.+.++..++++.+.|.+.+.. .
T Consensus 213 ~~~~~--s~~~~~~ii~~~~-~~~~~~~----------~i~~~-----~~~~~v~~~i~~~~~~l~~~i~~~~~~----~ 270 (318)
T PF06406_consen 213 AGIDT--SELQIDDIIRNRK-DKGYLRQ----------VINDE-----DVIDDVSEVIEEAVEELINRILRELGD----F 270 (318)
T ss_dssp -SBHH--HHHHHHHHHHTTT--HHHHHH----------HSSSH-----HHHHHHHHHHHHHHHHHHHHHHHHHTT----S
T ss_pred hcCCC--cHHHHHHHHHhhh-ccceecc----------cccch-----hhHHHHHHHHHHHHHHHHHHHHHHHhh----h
Confidence 11100 0001111111000 0000000 00000 012344455555555555555555432 3
Q ss_pred CCcceEEEecCccCcHHHHHHHHhhcC--CCCCCCCCCchhhhHhHHH
Q 006194 356 TDIREIVLVGGSTRIPKIQQLLKDFFD--GKEPSKGINPDEAVAHGAA 401 (657)
Q Consensus 356 ~~i~~V~LvGG~sr~p~v~~~l~~~f~--~~~v~~~~~~~~ava~GAa 401 (657)
.+++.|+|+||++. .+.+.|++.|+ ..++...-||+.|-|+|-+
T Consensus 271 ~~~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 271 SDIDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp -S-SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred ccCCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 46899999999965 78899999984 3467777899999999965
No 47
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=99.08 E-value=6.8e-09 Score=103.52 Aligned_cols=170 Identities=18% Similarity=0.196 Sum_probs=108.9
Q ss_pred eecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHHHHHHHhhcCC
Q 006194 199 RIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFIKLIKKKYNK 278 (657)
Q Consensus 199 ~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~ 278 (657)
..++|.+|.+.......+. .=.|+|+||..+.+..++ ++.+.-......+..|+..|.+.+++.+ ++
T Consensus 73 ~~~~ei~~~~~g~~~~~~~---~~~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l--------~~ 139 (248)
T TIGR00241 73 KIVTEISCHGKGANYLAPE---ARGVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRL--------GV 139 (248)
T ss_pred CceEEhhHHHHHHHHHCCC---CCEEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHc--------CC
Confidence 3577888876655433332 225999999998888887 5655555566667888888888877663 33
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHc----cCCceeEEEEee-ccCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 006194 279 DISKDNKAIGKLRRECERAKRAL----SSQHQVRVEIES-LFDGVDFSEPLTRARFEELNMDLFKKTMGPVKKALEDAGL 353 (657)
Q Consensus 279 ~~~~~~~~~~~L~~~~e~~K~~L----s~~~~~~~~i~~-l~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~ 353 (657)
++ ++++..+..- .-+....+..+. ... .+....+ .++++..+++.+...+.+.+...+
T Consensus 140 ~~-----------~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~--~l~~g~~---~~di~~~~~~~va~~i~~~~~~~~- 202 (248)
T TIGR00241 140 SV-----------EELGSLAEKADRKAKISSMCTVFAESELIS--LLAAGVK---KEDILAGVYESIAERVAEMLQRLK- 202 (248)
T ss_pred CH-----------HHHHHHHhcCCCCCCcCCEeEEEechhHHH--HHHCCCC---HHHHHHHHHHHHHHHHHHHHhhcC-
Confidence 32 2333333221 111111222110 000 0011122 256677777777777777665433
Q ss_pred CCCCcc-eEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHH
Q 006194 354 KKTDIR-EIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQ 403 (657)
Q Consensus 354 ~~~~i~-~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~ 403 (657)
++ .|+++||.+++|.+.+.+++.+ +.++..+.+|..+.|+|||++
T Consensus 203 ----~~~~Vvl~GGva~n~~l~~~l~~~l-g~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 203 ----IEAPIVFTGGVSKNKGLVKALEKKL-GMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred ----CCCCEEEECccccCHHHHHHHHHHh-CCcEEcCCCccHHHHHHHHhC
Confidence 44 7999999999999999999999 788888889999999999973
No 48
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=99.01 E-value=1.9e-08 Score=100.11 Aligned_cols=120 Identities=14% Similarity=0.149 Sum_probs=88.8
Q ss_pred eCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeeecchhHHHHHHhccccCCCcc
Q 006194 142 FSPEEISAMILQKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKD-AGIIAGLNVARIINEPTAAAIAYGLDKKGGEM 220 (657)
Q Consensus 142 ~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~-Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~ 220 (657)
+.-.+++.+..+|..+.--+ ....-.-++||-|++=+...|+.+.+ +.+...++...|..+|+++|++.| ..
T Consensus 82 v~dWD~~~~~w~~~~~~~Lk-~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~G------rs 154 (426)
T KOG0679|consen 82 VEDWDLFEMQWRYAYKNQLK-VNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANG------RS 154 (426)
T ss_pred cccHHHHHHHHHHHHhhhhh-cCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcC------CC
Confidence 44467777888877743221 22333568999998888888988877 456778888899999999999876 45
Q ss_pred eEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHHHHH
Q 006194 221 NILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFIKL 271 (657)
Q Consensus 221 ~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~ 271 (657)
+.+|+|+|++++.++-+. +|.+--.+... ..+||+.++..+.+.|..+
T Consensus 155 talVvDiGa~~~svsPV~--DG~Vlqk~vvk-s~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 155 TALVVDIGATHTSVSPVH--DGYVLQKGVVK-SPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred ceEEEEecCCCceeeeee--cceEeeeeeEe-cccchHHHHHHHHHHHhhc
Confidence 679999999999988664 33332333333 7899999999999988755
No 49
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.98 E-value=6.4e-08 Score=95.20 Aligned_cols=155 Identities=17% Similarity=0.237 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHcCCceeeecchhHHHHHHhccccC-----CCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCc
Q 006194 182 QRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKK-----GGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLG 256 (657)
Q Consensus 182 qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~-----~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lG 256 (657)
......+|.+.|||....+--|..|.--+|..... ...-.++|+|+|+..+.+.++.-+... ...+..+|
T Consensus 150 ~v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~l-----y~r~~~~g 224 (354)
T COG4972 150 VVESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKIL-----YTREVPVG 224 (354)
T ss_pred hhHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeee-----eEeeccCc
Confidence 34566789999999987777788887666652111 122237899999999999998765433 35568899
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHccCCceeEEEEeeccCCceeEEEecHHHHHHHHHHH
Q 006194 257 GEDFDHRVMDYFIKLIKKKYNKDISKDNKAIGKLRRECERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNMDL 336 (657)
Q Consensus 257 G~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~l~~~~~~~~~itr~~fe~~~~~~ 336 (657)
|+++++.+.+. |+.+. ..++.+|.....-. +--.+...++
T Consensus 225 ~~Qlt~~i~r~--------~~L~~-----------~~a~~~k~~~~~P~---------------------~y~~~vl~~f 264 (354)
T COG4972 225 TDQLTQEIQRA--------YSLTE-----------EKAEEIKRGGTLPT---------------------DYGSEVLRPF 264 (354)
T ss_pred HHHHHHHHHHH--------hCCCh-----------hHhHHHHhCCCCCC---------------------chhHHHHHHH
Confidence 99999887765 33333 45666665433221 1124667777
Q ss_pred HHHHHHHHHHHHHHc--CCCCCCcceEEEecCccCcHHHHHHHHhhc
Q 006194 337 FKKTMGPVKKALEDA--GLKKTDIREIVLVGGSTRIPKIQQLLKDFF 381 (657)
Q Consensus 337 ~~~~~~~i~~~l~~~--~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f 381 (657)
++.+.+.|.+.|+-. .-...+|++|+|.||++++-.+.+.+.+.+
T Consensus 265 ~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl 311 (354)
T COG4972 265 LGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRL 311 (354)
T ss_pred HHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHh
Confidence 888888888877742 224567999999999999999999999988
No 50
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.90 E-value=2.2e-07 Score=92.39 Aligned_cols=179 Identities=18% Similarity=0.157 Sum_probs=99.1
Q ss_pred eecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHHHHHHHhhcCC
Q 006194 199 RIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFIKLIKKKYNK 278 (657)
Q Consensus 199 ~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~ 278 (657)
..++|.+|.|.......+ +..=.|+|+||-.+.+..+. .++.+.-.....-+.-|.-.|=+.+++. +++
T Consensus 106 ~~v~EItaha~Ga~~~~p--p~v~tIIDIGGQDsK~I~~d-~~G~v~dF~MNdkCAAGTGrFLE~~A~~--------Lgi 174 (293)
T TIGR03192 106 KAITEIACHARGANYMGG--NAVRTILDMGGQDCKAIHCD-EKGKVTNFLMNDKCAAGTGRGMEVISDL--------MQI 174 (293)
T ss_pred cceeeHHHHHHHHHHhcC--CCCCEEEEeCCCceEEEEEc-CCCcEeeeeecCcccccccHHHHHHHHH--------cCC
Confidence 358999998776544321 12337899999866655442 3444444444444444544443334433 233
Q ss_pred CCCCCHHHHHHHHHHHHHHH-H--HccCCceeEEEEeeccCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 006194 279 DISKDNKAIGKLRRECERAK-R--ALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNMDLFKKTMGPVKKALEDAGLKK 355 (657)
Q Consensus 279 ~~~~~~~~~~~L~~~~e~~K-~--~Ls~~~~~~~~i~~l~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~ 355 (657)
++. .+..+ +.+.+ . .+|+. ..+..+.-.- .-+.-..++ ++++..+...+...+...+++.++.
T Consensus 175 ~le----el~~~---a~~~~~~p~~Iss~--CtVFAeSevi-~l~~~G~~~---edI~aGl~~sia~rv~~~~~~~~i~- 240 (293)
T TIGR03192 175 PIA----DLGPR---SFDVETEPEAVSSI--CVVFAKSEAL-GLLKAGYTK---NMVIAAYCQAMAERVVSLLERIGVE- 240 (293)
T ss_pred CHH----HHHHH---HHhcCCCCCCcCCc--ceEeccHhHH-HHHHCCCCH---HHHHHHHHHHHHHHHHHHhcccCCC-
Confidence 321 11111 21111 1 12222 2222211000 001111233 4455555555555555555543332
Q ss_pred CCcceEEEecCccCcHHHHHHHHhhcCCCCCC-CCCCchhhhHhHHHHHHhh
Q 006194 356 TDIREIVLVGGSTRIPKIQQLLKDFFDGKEPS-KGINPDEAVAHGAAVQGGI 406 (657)
Q Consensus 356 ~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~-~~~~~~~ava~GAa~~a~~ 406 (657)
..|+++||.++.|.+++.+++.+ +.++. .+.+|+.+.|+|||++|..
T Consensus 241 ---~~v~~~GGva~N~~l~~al~~~L-g~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 241 ---EGFFITGGIAKNPGVVKRIERIL-GIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred ---CCEEEECcccccHHHHHHHHHHh-CCCceeCCCCccHHHHHHHHHHHHH
Confidence 45899999999999999999999 67766 5778999999999999864
No 51
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.82 E-value=3.2e-07 Score=94.65 Aligned_cols=178 Identities=19% Similarity=0.170 Sum_probs=99.7
Q ss_pred eecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHHHHHHHhhcCC
Q 006194 199 RIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFIKLIKKKYNK 278 (657)
Q Consensus 199 ~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~ 278 (657)
..++|-+|.+.......+..++.-.|+|+||-... ++.+.++.+.-....+-+.-|+-.|=+.+++.| +.
T Consensus 220 ~iv~EItaha~GA~~L~p~~~~v~TIIDIGGQDsK--~I~l~~G~v~dF~MNdkCAAGTGrFLE~~A~~L--------gi 289 (404)
T TIGR03286 220 LIQEELTVNSKGAVYLADKQEGPATVIDIGGMDNK--AISVWDGIPDNFTMGGICAGASGRFLEMTAKRL--------GV 289 (404)
T ss_pred ceEEEEhhHHHHHHHhcccCCCCcEEEEeCCCceE--EEEEcCCceeeEEEcCcccccCcHHHHHHHHHh--------CC
Confidence 34788888765543333222334589999996544 455566765544445544545554444444442 22
Q ss_pred CCCCCHHHHHHHHHHHHHHH---HHccCCceeEEEEeeccCC-ceeEEEecHHHHHHHHHHHHHHHHHHHHH-HHHHcCC
Q 006194 279 DISKDNKAIGKLRRECERAK---RALSSQHQVRVEIESLFDG-VDFSEPLTRARFEELNMDLFKKTMGPVKK-ALEDAGL 353 (657)
Q Consensus 279 ~~~~~~~~~~~L~~~~e~~K---~~Ls~~~~~~~~i~~l~~~-~~~~~~itr~~fe~~~~~~~~~~~~~i~~-~l~~~~~ 353 (657)
++ ..|-+.+.+.+ ..+++... +.-+. +- .-...-.++ ++++..+...+...+.. .++..+.
T Consensus 290 ~i-------eEl~~lA~~~~~~pv~IsS~Ct--VFaeS--evIsll~~G~~~---eDIaAGl~~SIa~rv~~~l~~~~~i 355 (404)
T TIGR03286 290 DI-------TELGKLALKGMPEKVRMNSYCI--VFGIQ--DLVTALAEGASP---EDVAAAACHSVAEQVYEQQLQEIDV 355 (404)
T ss_pred CH-------HHHHHHHHhCCCCCCCccCccc--ccccH--hHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 22 12222222221 11222211 11000 00 000111233 44555555555555543 3444332
Q ss_pred CCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHHHh
Q 006194 354 KKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQGG 405 (657)
Q Consensus 354 ~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~a~ 405 (657)
. +.|+++||.++++.+.+.+++.+ +.++..+.+|+.+.|+|||++|.
T Consensus 356 ~----~~VvftGGva~N~gvv~ale~~L-g~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 356 R----EPVILVGGTSLIEGLVKALGDLL-GIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred C----CcEEEECChhhhHHHHHHHHHHh-CCcEEECCcccHHHHHHHHHHhc
Confidence 2 45999999999999999999999 78899999999999999999984
No 52
>PRK10331 L-fuculokinase; Provisional
Probab=98.77 E-value=5.4e-07 Score=98.79 Aligned_cols=86 Identities=23% Similarity=0.249 Sum_probs=59.1
Q ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHH
Q 006194 321 SEPLTRARFEELNMDLFKKTMGPVKKALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGA 400 (657)
Q Consensus 321 ~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GA 400 (657)
+...+|.++...+-+-+.-....+.+.+++.+ ...++.|.++||+++++.+.+.+.+.| +.++.... ..++.++||
T Consensus 355 ~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~--~~~~~~i~~~GGga~s~~w~Qi~Advl-g~pV~~~~-~~e~~a~Ga 430 (470)
T PRK10331 355 TLNTTRGHFYRAALEGLTAQLKRNLQVLEKIG--HFKASELLLVGGGSRNALWNQIKANML-DIPIKVLD-DAETTVAGA 430 (470)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCceEEEEcccccCHHHHHHHHHhc-CCeeEecC-cccchHHHH
Confidence 33456766554433333333333334444432 235789999999999999999999999 78886654 457889999
Q ss_pred HHHHhhhcCC
Q 006194 401 AVQGGILSGE 410 (657)
Q Consensus 401 a~~a~~~~~~ 410 (657)
|+.|+.-.+.
T Consensus 431 A~la~~~~G~ 440 (470)
T PRK10331 431 AMFGWYGVGE 440 (470)
T ss_pred HHHHHHhcCC
Confidence 9999876654
No 53
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=98.74 E-value=3.3e-07 Score=97.65 Aligned_cols=120 Identities=12% Similarity=0.042 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHH-HHHhCCCCCcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeeecchhHHHHHHhccccCCCcceE
Q 006194 145 EEISAMILQKMKETA-EAYLGKKIKDAVVTVPAYFNDAQRQATKD-AGIIAGLNVARIINEPTAAAIAYGLDKKGGEMNI 222 (657)
Q Consensus 145 ~el~~~~L~~l~~~a-~~~~~~~~~~~vitVPa~~~~~qr~~l~~-Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~v 222 (657)
.+....+.+++...- .......-..+++|-|..+...+|+.+.+ ..+...++.+.+...+.+++++.+... .+.
T Consensus 83 W~~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~----~~g 158 (444)
T COG5277 83 WDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSD----ETG 158 (444)
T ss_pred cHHHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCC----Cce
Confidence 444555666655442 11111223478999999999999887766 566677788888888888888776442 367
Q ss_pred EEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHHHHH
Q 006194 223 LVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFIKL 271 (657)
Q Consensus 223 lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~ 271 (657)
+|+|+|.+.++|+=+--.- .+........+||++++..|.+.|...
T Consensus 159 ~ViD~G~~~t~v~PV~DG~---~l~~a~~ri~~gG~~it~~l~~lL~~~ 204 (444)
T COG5277 159 LVIDSGDSVTHVIPVVDGI---VLPKAVKRIDIGGRDITDYLKKLLREK 204 (444)
T ss_pred EEEEcCCCceeeEeeeccc---cccccceeeecCcHHHHHHHHHHHhhc
Confidence 9999999999988654221 112223336899999999988887663
No 54
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=98.73 E-value=1e-06 Score=89.84 Aligned_cols=178 Identities=15% Similarity=0.148 Sum_probs=102.2
Q ss_pred eecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEe-CCeEEEEEEeCCCCCccchhhHHHHHHHHHHHHhhcC
Q 006194 199 RIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTID-NGVFEVLATSGDTHLGGEDFDHRVMDYFIKLIKKKYN 277 (657)
Q Consensus 199 ~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~-~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~ 277 (657)
.+++|.+|-|.......+ +.=.|+|+||-.+.+ +.+. +|.+.-.....-+.-|.-.|=+.+++. .+
T Consensus 249 ~vitEItcHA~GA~~l~P---~vrTIIDIGGQDsK~--I~ld~~G~V~dF~MNDKCAAGTGrFLE~mA~~--------Lg 315 (432)
T TIGR02259 249 HIRSEILCHGLGAHLMYP---GTRTVLDIGGQDTKG--IQIDDHGIVENFQMNDRCAAGCGRYLGYIADE--------MN 315 (432)
T ss_pred ceeeeHHHHHHHHHHHCC---CCCEEEEeCCCceEE--EEEcCCCcEeeeeecCcccccchHHHHHHHHH--------cC
Confidence 456999998876654433 233789999987665 4444 355444444444555555544444433 33
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHccCCceeEEEEeeccCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCC
Q 006194 278 KDISKDNKAIGKLRRECERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNMDLFKKTMGPVKKALEDA-GLKKT 356 (657)
Q Consensus 278 ~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~l~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~-~~~~~ 356 (657)
.++. .|-..+.+.++...-+....+.-+.-.- .-+.-.+++ ++++..+...+...+...+.+. +.
T Consensus 316 i~le-------El~~lA~~a~~pv~ISS~CtVFAESEVI-slla~G~~r---eDIaAGL~~SIA~Rv~s~l~r~~~i--- 381 (432)
T TIGR02259 316 MGLH-------ELGPLAMKSSKPARINSTCTVFAGAELR-DRLALGDKR---EDILAGLHRAIILRAISIISRSGGI--- 381 (432)
T ss_pred CCHH-------HHHHHHhcCCCCCCcCCcceEEehHHHH-HHHHCCCCH---HHHHHHHHHHHHHHHHHHHhcccCC---
Confidence 3321 2222233333222222223332221000 001111223 4555566666666555555543 22
Q ss_pred CcceEEEecCccCcHHHHHHHHhhcC----CCCCCCCCCchhhhHhHHHHHH
Q 006194 357 DIREIVLVGGSTRIPKIQQLLKDFFD----GKEPSKGINPDEAVAHGAAVQG 404 (657)
Q Consensus 357 ~i~~V~LvGG~sr~p~v~~~l~~~f~----~~~v~~~~~~~~ava~GAa~~a 404 (657)
-..|+++||.++.+.+.+.|++.++ +.++..+.+|+.+.|+|||++|
T Consensus 382 -~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 382 -TDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred -CCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 2469999999999999999999994 4567788899999999999975
No 55
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.71 E-value=2.6e-06 Score=85.75 Aligned_cols=178 Identities=19% Similarity=0.206 Sum_probs=104.7
Q ss_pred eecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHHHHHHHhhcCC
Q 006194 199 RIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFIKLIKKKYNK 278 (657)
Q Consensus 199 ~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~ 278 (657)
..++|-+|-+.......+. .=.|+|+||--..+ +.+.+|.+.-.....-+.-|.-.|-+.+++. .+.
T Consensus 211 ~~~~Ei~ah~kgA~~f~p~---~dtIiDIGGQD~K~--i~i~dG~v~df~mN~~CAAGtGrFLE~~A~~--------Lgv 277 (396)
T COG1924 211 KVVVEISAHAKGARYFAPD---VDTVIDIGGQDSKV--IKLEDGKVDDFTMNDKCAAGTGRFLEVIARR--------LGV 277 (396)
T ss_pred cceeeeehhHHHHHHhCCC---CcEEEEecCcceeE--EEEeCCeeeeeEeccccccccchHHHHHHHH--------hCC
Confidence 4566666655544333322 11789999985554 4555776665555554555544444444433 333
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHccCCceeEEEEeeccCCcee-EEEecHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCCC
Q 006194 279 DISKDNKAIGKLRRECERAKRALSSQHQVRVEIESLFDGVDF-SEPLTRARFEELNMDLFKKTMGPVKK-ALEDAGLKKT 356 (657)
Q Consensus 279 ~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~l~~~~~~-~~~itr~~fe~~~~~~~~~~~~~i~~-~l~~~~~~~~ 356 (657)
++ ..+-+.+++.+..-.-+....+..+. ++ +..=.-...|+++..+...+...+.. .++......
T Consensus 278 ~v-------~E~~~~A~~~~~~v~i~S~CaVF~eS-----evi~~~~~G~~~EdI~AGl~~Sv~~~v~~~~~~~~~i~~- 344 (396)
T COG1924 278 DV-------EELGKLALKATPPVKINSRCAVFAES-----EVISALAEGASPEDILAGLAYSVAENVAEKVIKRVDIEE- 344 (396)
T ss_pred CH-------HHHHHHHhcCCCCcccCCeeEEEehH-----HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCC-
Confidence 33 22223344443322222222222211 00 00000012367777777777666655 555543322
Q ss_pred CcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHHHhh
Q 006194 357 DIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQGGI 406 (657)
Q Consensus 357 ~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~a~~ 406 (657)
-|+|+||.+.+..+.+.+.+.+ +.++..+.+|...-|.|||++|..
T Consensus 345 ---~iv~~GGva~n~av~~ale~~l-g~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 345 ---PIVLQGGVALNKAVVRALEDLL-GRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred ---CEEEECcchhhHHHHHHHHHHh-CCeeecCCccchhhHHHHHHHHhh
Confidence 2999999999999999999999 799999999999999999999864
No 56
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=98.70 E-value=3.1e-06 Score=83.04 Aligned_cols=178 Identities=16% Similarity=0.108 Sum_probs=96.2
Q ss_pred ecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEE-eCCeEEEEEEeCCCCCccchhhHHHHHHHHHHHHhhcCC
Q 006194 200 IINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTI-DNGVFEVLATSGDTHLGGEDFDHRVMDYFIKLIKKKYNK 278 (657)
Q Consensus 200 li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~-~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~ 278 (657)
.++|.+|.|.......+ +.=.|+|+||-.+.+ +++ .++.+.-.....-+.-|.-.|=+.+++. .+.
T Consensus 80 ~vtEIt~ha~GA~~~~p---~~~tIiDIGGQD~K~--I~~~~~G~v~~f~MNdkCAAGTG~FLe~~A~~--------L~i 146 (262)
T TIGR02261 80 HFYSMTTHARGAIYLNP---EARAVLDIGALHGRA--IRMDERGKVEAYKMTSQCASGSGQFLENIARY--------LGI 146 (262)
T ss_pred CeeEEeHHHHHHHHHCC---CCCEEEEeCCCceEE--EEEcCCCcEeeEEecCcccccccHHHHHHHHH--------hCC
Confidence 35677777665544332 233789999987665 444 2455444444444445544444444433 233
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHccCCceeEEEEeeccCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 006194 279 DISKDNKAIGKLRRECERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNMDLFKKTMGPVKKALEDAGLKKTDI 358 (657)
Q Consensus 279 ~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~l~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i 358 (657)
++ . .|-..+.+.++...-+....+.-+.-.- .-+.--.+| ++++..+...+...+...++..+.. -
T Consensus 147 ~l----e---el~~~a~~~~~~~~iss~CtVFaeSevi-~~~~~G~~~---edI~aGl~~sia~r~~~~~~~~~~~---~ 212 (262)
T TIGR02261 147 AQ----D---EIGSLSQQADNPEKVSGICAVLAETDVI-NMVSRGISA---PNILKGIHESMADRLAKLLKSLGAL---D 212 (262)
T ss_pred CH----H---HHHHHHhcCCCCCCcCCCceEEchhhHH-HHHHCCCCH---HHHHHHHHHHHHHHHHHHHhccCCC---C
Confidence 32 1 1212222222222222222222221000 001111233 4555566666666665555554321 1
Q ss_pred ceEEEecCccCcHHHHHHHHhhcCCCC----CCCCCCchhhhHhHHHHHH
Q 006194 359 REIVLVGGSTRIPKIQQLLKDFFDGKE----PSKGINPDEAVAHGAAVQG 404 (657)
Q Consensus 359 ~~V~LvGG~sr~p~v~~~l~~~f~~~~----v~~~~~~~~ava~GAa~~a 404 (657)
+.|+++||.++.+.+.+.|++.+++.+ +..+.+|+.+.|+|||++|
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 359999999999999999999885433 5556689999999999975
No 57
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=98.69 E-value=6.3e-07 Score=98.12 Aligned_cols=87 Identities=21% Similarity=0.226 Sum_probs=61.3
Q ss_pred eEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhH
Q 006194 320 FSEPLTRARFEELNMDLFKKTMGPVKKALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHG 399 (657)
Q Consensus 320 ~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~G 399 (657)
++...+|.+|-..+-+-+.-....+.+.+++.+. ..++.|.++||+++++.+.+.+.+.| +.+|....+ .++.++|
T Consensus 358 l~~~~~~~~l~rAvlEgia~~~r~~~e~l~~~~~--~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~~~~~-~e~~~lG 433 (465)
T TIGR02628 358 LTLNTTRGHIYRAALEGLTAQLKRNLQMLEQIGQ--FKASELLLVGGGSKNTLWNQIRANML-DIPVKVVDD-AETTVAG 433 (465)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcceEEEecCccCCHHHHHHhhhhc-CCeeEeccC-CcchHHH
Confidence 3344566665554444444344444455555431 24788999999999999999999999 788866644 5788999
Q ss_pred HHHHHhhhcCC
Q 006194 400 AAVQGGILSGE 410 (657)
Q Consensus 400 Aa~~a~~~~~~ 410 (657)
||+.|+.-.+.
T Consensus 434 aA~~a~~a~G~ 444 (465)
T TIGR02628 434 AAMFGFYGVGE 444 (465)
T ss_pred HHHHHHHhcCc
Confidence 99999876654
No 58
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=98.68 E-value=2.5e-06 Score=94.15 Aligned_cols=82 Identities=26% Similarity=0.264 Sum_probs=54.9
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHH
Q 006194 323 PLTRARFEELNMDLFKKTMGPVKKALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAV 402 (657)
Q Consensus 323 ~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~ 402 (657)
..+|.+|-..+-+-+.-......+.|.+. ....++.|.++||++|++.+.+++.+.+ +.++..+ ...|+.+.|+|.
T Consensus 369 ~~~~~~l~ravlEgva~~l~~~~~~l~~~--~g~~~~~i~~~GGgars~~w~Qi~Ad~~-g~~v~~~-~~~e~~a~g~A~ 444 (502)
T COG1070 369 PHTRAHLARAVLEGVAFALADGLEALEEL--GGKPPSRVRVVGGGARSPLWLQILADAL-GLPVVVP-EVEEAGALGGAA 444 (502)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCccEEEEECCcccCHHHHHHHHHHc-CCeeEec-CcccchHHHHHH
Confidence 34666666554444444444444555554 1234679999999999999999999999 7888765 345666666666
Q ss_pred HHhhhc
Q 006194 403 QGGILS 408 (657)
Q Consensus 403 ~a~~~~ 408 (657)
.++...
T Consensus 445 ~~~~~~ 450 (502)
T COG1070 445 LAAAAL 450 (502)
T ss_pred HHHHHh
Confidence 555544
No 59
>PRK15027 xylulokinase; Provisional
Probab=98.63 E-value=2.8e-06 Score=93.54 Aligned_cols=85 Identities=18% Similarity=0.223 Sum_probs=62.3
Q ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHH
Q 006194 322 EPLTRARFEELNMDLFKKTMGPVKKALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAA 401 (657)
Q Consensus 322 ~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa 401 (657)
...+|.+|-..+-+-+.-....+.+.++..+. .++.|+++||+++++.+.+.+.+.+ +.++....+.+++.++|||
T Consensus 354 ~~~~~~~l~rAvlEgia~~~~~~~~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~~~~~a~GaA 429 (484)
T PRK15027 354 HQHGPNELARAVLEGVGYALADGMDVVHACGI---KPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAA 429 (484)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CccEEEEeCcccCCHHHHHHHHHHh-CCeEEeecCCCcchHHHHH
Confidence 34567666655444444444444455555443 4789999999999999999999999 8888665567778899999
Q ss_pred HHHhhhcCC
Q 006194 402 VQGGILSGE 410 (657)
Q Consensus 402 ~~a~~~~~~ 410 (657)
+.|+.-.|.
T Consensus 430 ~lA~~~~G~ 438 (484)
T PRK15027 430 RLAQIAANP 438 (484)
T ss_pred HHHHHhcCC
Confidence 999876654
No 60
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.58 E-value=8e-07 Score=92.98 Aligned_cols=83 Identities=17% Similarity=0.316 Sum_probs=58.5
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHH------------cCCceeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEE
Q 006194 169 DAVVTVPAYFNDAQRQATKDAGII------------AGLNVARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSI 236 (657)
Q Consensus 169 ~~vitVPa~~~~~qr~~l~~Aa~~------------AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv 236 (657)
-.+||.++. .++.++++++. ||++...++. |.|++.+.... +++..++++|+||||+++++
T Consensus 90 ahIITg~~~----~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse--Eke~gVa~IDIGgGTT~iaV 162 (475)
T PRK10719 90 AVIITGETA----RKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE--ERNTRVLNIDIGGGTANYAL 162 (475)
T ss_pred EEEEEechh----HHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh--hccCceEEEEeCCCceEEEE
Confidence 457787764 44555556665 6777666666 88888876532 45778999999999999999
Q ss_pred EEEeCCeEEEEEEeCCCCCccchhhHH
Q 006194 237 LTIDNGVFEVLATSGDTHLGGEDFDHR 263 (657)
Q Consensus 237 ~~~~~~~~~v~~~~~~~~lGG~~~d~~ 263 (657)
+.-.. +.+.+..++||++++..
T Consensus 163 f~~G~-----l~~T~~l~vGG~~IT~D 184 (475)
T PRK10719 163 FDAGK-----VIDTACLNVGGRLIETD 184 (475)
T ss_pred EECCE-----EEEEEEEecccceEEEC
Confidence 97542 12344578999988654
No 61
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=98.56 E-value=1e-05 Score=89.48 Aligned_cols=82 Identities=22% Similarity=0.253 Sum_probs=56.5
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHH
Q 006194 324 LTRARFEELNMDLFKKTMGPVKKALEDAGL-KKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAV 402 (657)
Q Consensus 324 itr~~fe~~~~~~~~~~~~~i~~~l~~~~~-~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~ 402 (657)
.+|.++- +-+++.+.-.+...++...- ....++.|.++||+++++.+.+.+.+.| +.+|.... ..++.++|||+
T Consensus 375 ~~~~~i~---rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~a~s~~w~Qi~Adv~-g~pV~~~~-~~e~~alGaAl 449 (504)
T PTZ00294 375 TTRAHIV---RAALEAIALQTNDVIESMEKDAGIELNSLRVDGGLTKNKLLMQFQADIL-GKDIVVPE-MAETTALGAAL 449 (504)
T ss_pred CCHHHHH---HHHHHHHHHHHHHHHHHHHHhhCCCcceEEEecccccCHHHHHHHHHHh-CCceEecC-cccchHHHHHH
Confidence 4565544 34444444444443332211 1123789999999999999999999999 78887654 55688999999
Q ss_pred HHhhhcCC
Q 006194 403 QGGILSGE 410 (657)
Q Consensus 403 ~a~~~~~~ 410 (657)
.|+.-.|.
T Consensus 450 ~aa~a~G~ 457 (504)
T PTZ00294 450 LAGLAVGV 457 (504)
T ss_pred HHHhhcCc
Confidence 99876664
No 62
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=98.51 E-value=1.4e-05 Score=88.63 Aligned_cols=52 Identities=23% Similarity=0.229 Sum_probs=44.6
Q ss_pred CcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHHHhhhcCC
Q 006194 357 DIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQGGILSGE 410 (657)
Q Consensus 357 ~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~a~~~~~~ 410 (657)
.++.|.++||+++++.+.+.+.+.| +.++.... ..++.++|||+.|+.-.|.
T Consensus 401 ~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~-~~e~~a~GaA~la~~~~G~ 452 (505)
T TIGR01314 401 PLNMIQATGGFASSEVWRQMMSDIF-EQEIVVPE-SYESSCLGACILGLKALGL 452 (505)
T ss_pred CCcEEEEecCcccCHHHHHHHHHHc-CCeeEecC-CCCcchHHHHHHHHHhcCc
Confidence 5789999999999999999999999 78887654 4468899999999876553
No 63
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.42 E-value=1.9e-05 Score=89.41 Aligned_cols=324 Identities=18% Similarity=0.292 Sum_probs=186.0
Q ss_pred eeEcHHHHHHHhh----cccchhhHhHHhhCCC--------CCCHHHH--h--hhccCCe-EEeecCCceeEEE-EEc--
Q 006194 77 RLIGEAAKNQAAL----NAERTVFDVKRLIGRK--------FDDPEVQ--R--DIKFLPY-KIVNKGGKPYIQV-KVK-- 136 (657)
Q Consensus 77 ~~~G~~A~~~~~~----~p~~~~~~~k~~lg~~--------~~~~~~~--~--~~~~~~~-~~~~~~~~~~~~v-~~~-- 136 (657)
.-+|.+|...+.. .....+.+-||+||-. ++..... . .....|+ ..+++.|.+...+ ...
T Consensus 330 vRVG~EA~RLa~~r~GtEg~TGlSSPKRYLWDe~~~~q~WRFn~~~~~~~~eP~ata~p~~~liN~~G~~L~~l~~~~~r 409 (1002)
T PF07520_consen 330 VRVGPEAARLASQRRGTEGSTGLSSPKRYLWDERPYEQGWRFNSAYVKSQNEPLATAAPFTNLINDDGQPLYQLDPEDER 409 (1002)
T ss_pred ceecHHHHHHHHHhcCCccccCCCCchhhccCCCccCCCcccCCCCCCCccCchhhhHHHHHhhcccCcchhhhcCcccc
Confidence 4588888655432 2334567888988742 2111110 0 1111222 1234566665444 111
Q ss_pred --CceeEeCHHHHHHHHHHHHHHHHHHHhCC--------------CCCcEEEEeCCCCCHHHHHHHHHHHHHc-------
Q 006194 137 --GETKVFSPEEISAMILQKMKETAEAYLGK--------------KIKDAVVTVPAYFNDAQRQATKDAGIIA------- 193 (657)
Q Consensus 137 --~~~~~~~~~el~~~~L~~l~~~a~~~~~~--------------~~~~~vitVPa~~~~~qr~~l~~Aa~~A------- 193 (657)
.-...||-..++.++|..+..+|.-+++. ..+.+++|||+-....+|+.++..++.|
T Consensus 410 ~pvf~p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~ 489 (1002)
T PF07520_consen 410 LPVFSPHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKA 489 (1002)
T ss_pred CccccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 11256888999999999999888766542 2457999999999999999888877654
Q ss_pred -CCc--------------------eee-ecchhHHHHHHhccc------------------cCC----------CcceEE
Q 006194 194 -GLN--------------------VAR-IINEPTAAAIAYGLD------------------KKG----------GEMNIL 223 (657)
Q Consensus 194 -Gl~--------------------~~~-li~Ep~Aaal~y~~~------------------~~~----------~~~~vl 223 (657)
|.. .+. =-+|.||.-+-|.+. +.. +.-+|+
T Consensus 490 lGw~~~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriA 569 (1002)
T PF07520_consen 490 LGWHPWDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIA 569 (1002)
T ss_pred cCCCCCCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEE
Confidence 421 011 135666654444211 111 234588
Q ss_pred EEEecCCeeEEEEEEEe----CCe-EEEE----EEeCCCCCccchhhHHHHHH-HHHHHHhh----------------cC
Q 006194 224 VYDLGGGTFDVSILTID----NGV-FEVL----ATSGDTHLGGEDFDHRVMDY-FIKLIKKK----------------YN 277 (657)
Q Consensus 224 v~D~Gggt~dvsv~~~~----~~~-~~v~----~~~~~~~lGG~~~d~~l~~~-l~~~~~~~----------------~~ 277 (657)
-+|+||||||..|-++. .+. ..+. -..| ..+.|+||-..+++. +...+.+. +|
T Consensus 570 SIDIGGGTTDL~It~Y~ld~G~g~nv~I~P~q~FReG-FkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG 648 (1002)
T PF07520_consen 570 SIDIGGGTTDLMITQYRLDDGQGSNVKITPEQLFREG-FKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFG 648 (1002)
T ss_pred EEecCCCcceeeEEEEEeccCCcceeEECcchhhhhh-cccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhC
Confidence 99999999999998876 332 2221 1223 567888887765543 33333221 12
Q ss_pred CCCCCC-HH-------------HHHHHHHHHHHHHHHccCCceeEEEEeecc---------------------------C
Q 006194 278 KDISKD-NK-------------AIGKLRRECERAKRALSSQHQVRVEIESLF---------------------------D 316 (657)
Q Consensus 278 ~~~~~~-~~-------------~~~~L~~~~e~~K~~Ls~~~~~~~~i~~l~---------------------------~ 316 (657)
.+-... .+ ...+++.++|+.=. +.........+..+. +
T Consensus 649 ~dg~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~-~~~~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fd 727 (1002)
T PF07520_consen 649 GDGQSDQDRVLRQQFTLQVFIPIGLAILKAYENYDP-LDPSAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFD 727 (1002)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cccCccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCcc
Confidence 110000 00 01122344443211 000111111111110 1
Q ss_pred CceeEEEecHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCC-------
Q 006194 317 GVDFSEPLTRARFEELNM---DLFKKTMGPVKKALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEP------- 386 (657)
Q Consensus 317 ~~~~~~~itr~~fe~~~~---~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v------- 386 (657)
=.++.+.|+..++...+- -.+...+..+-+++... +.|-++|+|--||+|.|+..+++..+ .++
T Consensus 728 ildv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y-----~CDVLLLTGRPSrlPgvqalfr~~~p-vPp~RIv~l~ 801 (1002)
T PF07520_consen 728 ILDVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHY-----DCDVLLLTGRPSRLPGVQALFRHLLP-VPPDRIVPLH 801 (1002)
T ss_pred eecceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHh-----CCCEEEEcCCccccHHHHHHHHHhCC-CCcccEEecC
Confidence 135678899999988775 66777777777777764 35789999999999999999999873 111
Q ss_pred -------------CCCCCchhhhHhHHHHHHhhhc
Q 006194 387 -------------SKGINPDEAVAHGAAVQGGILS 408 (657)
Q Consensus 387 -------------~~~~~~~~ava~GAa~~a~~~~ 408 (657)
.+--||...||.||.+.+....
T Consensus 802 ~Y~tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 802 GYRTGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred CeeecccccCCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 1334899999999988765443
No 64
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=98.42 E-value=4.4e-05 Score=84.31 Aligned_cols=84 Identities=23% Similarity=0.283 Sum_probs=57.0
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHH
Q 006194 323 PLTRARFEELNMDLFKKTMGPVKKALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAV 402 (657)
Q Consensus 323 ~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~ 402 (657)
..+|.++-..+-+-+.--...+.+.|+.. ....++.|.++||+++++.+.+++.+.| +.++... +..++.|+|||+
T Consensus 367 ~~~~~~l~rAvlEgia~~~~~~~~~l~~~--~g~~~~~i~~~GGga~s~~w~Qi~ADv~-g~pv~~~-~~~e~~alGaA~ 442 (493)
T TIGR01311 367 GTTKAHIARAALEAIAFQTRDVLEAMEKD--AGVEITKLRVDGGMTNNNLLMQFQADIL-GVPVVRP-KVTETTALGAAY 442 (493)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCceEEEecccccCHHHHHHHHHhc-CCeeEec-CCCcchHHHHHH
Confidence 44565555433333322233333444432 1224789999999999999999999999 7888664 456788999999
Q ss_pred HHhhhcCC
Q 006194 403 QGGILSGE 410 (657)
Q Consensus 403 ~a~~~~~~ 410 (657)
.|+.-.|.
T Consensus 443 ~a~~~~G~ 450 (493)
T TIGR01311 443 AAGLAVGY 450 (493)
T ss_pred HHHhhcCc
Confidence 99876654
No 65
>PRK13317 pantothenate kinase; Provisional
Probab=98.41 E-value=3.4e-05 Score=77.47 Aligned_cols=49 Identities=24% Similarity=0.292 Sum_probs=42.5
Q ss_pred CcceEEEec-CccCcHHHHHHHHhhcC--CCCCCCCCCchhhhHhHHHHHHh
Q 006194 357 DIREIVLVG-GSTRIPKIQQLLKDFFD--GKEPSKGINPDEAVAHGAAVQGG 405 (657)
Q Consensus 357 ~i~~V~LvG-G~sr~p~v~~~l~~~f~--~~~v~~~~~~~~ava~GAa~~a~ 405 (657)
.+..|+++| |.++.|.+++.+.+.+. +.++..+.+|..+.|+|||+++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 457899999 79999999999998873 46777888999999999999875
No 66
>PRK00047 glpK glycerol kinase; Provisional
Probab=98.41 E-value=3.1e-05 Score=85.70 Aligned_cols=83 Identities=18% Similarity=0.198 Sum_probs=56.6
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHH
Q 006194 323 PLTRARFEELNMDLFKKTMGPVKKALEDAG-LKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAA 401 (657)
Q Consensus 323 ~itr~~fe~~~~~~~~~~~~~i~~~l~~~~-~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa 401 (657)
..+|.++- +-+++.+.-.+...++... .....++.|.++||+++++.+.|.+.+.| +.+|... +..++.|+|||
T Consensus 371 ~~~~~~l~---rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~-~~~e~~a~GaA 445 (498)
T PRK00047 371 GTTKEHII---RATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADIL-GVPVERP-VVAETTALGAA 445 (498)
T ss_pred CCCHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhh-CCeeEec-CcccchHHHHH
Confidence 34565544 3444444433333333221 11224789999999999999999999999 7888665 45578899999
Q ss_pred HHHhhhcCC
Q 006194 402 VQGGILSGE 410 (657)
Q Consensus 402 ~~a~~~~~~ 410 (657)
+.|+.-.|.
T Consensus 446 ~~A~~~~G~ 454 (498)
T PRK00047 446 YLAGLAVGF 454 (498)
T ss_pred HHHhhhcCc
Confidence 999876654
No 67
>PRK04123 ribulokinase; Provisional
Probab=98.40 E-value=6.3e-05 Score=84.30 Aligned_cols=80 Identities=21% Similarity=0.357 Sum_probs=57.3
Q ss_pred EecHHHHHHHHHHHHHHHH---HHHHHHHHHcCCCCCCcceEEEecCc-cCcHHHHHHHHhhcCCCCCCCCCCchhhhHh
Q 006194 323 PLTRARFEELNMDLFKKTM---GPVKKALEDAGLKKTDIREIVLVGGS-TRIPKIQQLLKDFFDGKEPSKGINPDEAVAH 398 (657)
Q Consensus 323 ~itr~~fe~~~~~~~~~~~---~~i~~~l~~~~~~~~~i~~V~LvGG~-sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~ 398 (657)
.-+|.++- +-+++.+. ..+.+.|++.+ ..++.|.++||+ ++++.+.|.+.+.| +.+|... ...|+.|+
T Consensus 407 ~~~~~~l~---RAvlEgia~~~~~~~e~l~~~g---~~~~~i~~~GGg~s~s~~w~Qi~ADv~-g~pV~~~-~~~e~~al 478 (548)
T PRK04123 407 GTDAPDIY---RALIEATAFGTRAIMECFEDQG---VPVEEVIAAGGIARKNPVLMQIYADVL-NRPIQVV-ASDQCPAL 478 (548)
T ss_pred CCCHHHHH---HHHHHHHHHHHHHHHHHHHHcC---CCcceEEEeCCCcccCHHHHHHHHHhc-CCceEec-CccccchH
Confidence 34566554 44444444 33444444433 347899999999 99999999999999 7888655 45678899
Q ss_pred HHHHHHhhhcCC
Q 006194 399 GAAVQGGILSGE 410 (657)
Q Consensus 399 GAa~~a~~~~~~ 410 (657)
|||+.|+.-.+.
T Consensus 479 GaA~lA~~~~G~ 490 (548)
T PRK04123 479 GAAIFAAVAAGA 490 (548)
T ss_pred HHHHHHHHHhcc
Confidence 999999876553
No 68
>PLN02295 glycerol kinase
Probab=98.36 E-value=5.3e-05 Score=84.07 Aligned_cols=83 Identities=22% Similarity=0.262 Sum_probs=57.4
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHH---HHHHc-CC--CCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhh
Q 006194 323 PLTRARFEELNMDLFKKTMGPVKK---ALEDA-GL--KKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAV 396 (657)
Q Consensus 323 ~itr~~fe~~~~~~~~~~~~~i~~---~l~~~-~~--~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~av 396 (657)
.-+|.++-. -+++.+.-.++. .+++. +. ....++.|.++||+++++.+.|.+.+.| +.+|... +..++.
T Consensus 375 ~~~~~~l~R---AvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~-g~pV~~~-~~~e~~ 449 (512)
T PLN02295 375 FTNKAHIAR---AVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLL-GSPVVRP-ADIETT 449 (512)
T ss_pred CCCHHHHHH---HHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhc-CCceEec-CccccH
Confidence 345655544 444444433333 34332 21 2235788999999999999999999999 7888655 456788
Q ss_pred HhHHHHHHhhhcCC
Q 006194 397 AHGAAVQGGILSGE 410 (657)
Q Consensus 397 a~GAa~~a~~~~~~ 410 (657)
|+|||+.|+.-.+.
T Consensus 450 alGaA~~A~~~~G~ 463 (512)
T PLN02295 450 ALGAAYAAGLAVGL 463 (512)
T ss_pred HHHHHHHHHhhcCc
Confidence 99999999876654
No 69
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=98.34 E-value=0.00018 Score=80.38 Aligned_cols=84 Identities=19% Similarity=0.243 Sum_probs=60.7
Q ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCc-cCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHH
Q 006194 322 EPLTRARFEELNMDLFKKTMGPVKKALEDAGLKKTDIREIVLVGGS-TRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGA 400 (657)
Q Consensus 322 ~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~-sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GA 400 (657)
...+|.+|-..+-+-+.-....+.+.|+..+ ..++.|.++||+ ++++.+.+.+.+.| +.+|....+ .++.|+||
T Consensus 403 ~~~~~~~~~RAvlEgia~~~~~~l~~l~~~g---~~~~~i~~~GGg~a~s~~w~Qi~Adv~-g~pV~~~~~-~e~~a~Ga 477 (536)
T TIGR01234 403 LATDAPLLYRALIEATAFGTRMIMETFTDSG---VPVEELMAAGGIARKNPVIMQIYADVT-NRPLQIVAS-DQAPALGA 477 (536)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCcceEEEeCCccccCHHHHHHHHHhh-CCeeEeccC-CcchhHHH
Confidence 3456766655444444334444455555544 357899999999 99999999999999 788876654 46889999
Q ss_pred HHHHhhhcCC
Q 006194 401 AVQGGILSGE 410 (657)
Q Consensus 401 a~~a~~~~~~ 410 (657)
|+.|+.-.+.
T Consensus 478 A~lA~~~~G~ 487 (536)
T TIGR01234 478 AIFAAVAAGV 487 (536)
T ss_pred HHHHHHHcCC
Confidence 9999876654
No 70
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=98.17 E-value=0.00014 Score=80.44 Aligned_cols=52 Identities=35% Similarity=0.535 Sum_probs=45.3
Q ss_pred CcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHHHhhhcCC
Q 006194 357 DIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQGGILSGE 410 (657)
Q Consensus 357 ~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~a~~~~~~ 410 (657)
.++.|.++||+++++.+.+.+.+.| +.++... +..++.++|||+.|+.-.+.
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~-g~pv~~~-~~~e~~a~GaA~~a~~~~g~ 441 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIF-GTPVDVP-EGEEGPALGAAILAAWALGE 441 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHh-CCceeec-CCCcchHHHHHHHHHHhcCC
Confidence 4789999999999999999999999 7888765 46678999999999876654
No 71
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=98.01 E-value=5.5e-05 Score=72.98 Aligned_cols=191 Identities=21% Similarity=0.212 Sum_probs=103.3
Q ss_pred HHHcCCceeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHHH
Q 006194 190 GIIAGLNVARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFI 269 (657)
Q Consensus 190 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~ 269 (657)
.+..|.++..-=-|+.+|.+....... .+...+++|+||||+|.+++.-.+.. .-+...| .|+.++..|..
T Consensus 105 ~~~lgv~V~igGvEAemAi~GALTTPG-t~~PlaIlDmG~GSTDAsii~~~g~v-~~iHlAG----AG~mVTmlI~s--- 175 (332)
T PF08841_consen 105 EEELGVPVEIGGVEAEMAILGALTTPG-TDKPLAILDMGGGSTDASIINRDGEV-TAIHLAG----AGNMVTMLINS--- 175 (332)
T ss_dssp HHHHTSEEEEECEHHHHHHHHHTTSTT---SSEEEEEE-SSEEEEEEE-TTS-E-EEEEEE-----SHHHHHHHHHH---
T ss_pred HHHHCCceEEccccHHHHHhcccCCCC-CCCCeEEEecCCCcccHHHhCCCCcE-EEEEecC----CchhhHHHHHH---
Confidence 345688887778899999988755544 36678999999999999999765433 2222222 34555555433
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHccCCce----------eEEEEee-c-----------cCC--ceeEEEec
Q 006194 270 KLIKKKYNKDISKDNKAIGKLRRECERAKRALSSQHQ----------VRVEIES-L-----------FDG--VDFSEPLT 325 (657)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----------~~~~i~~-l-----------~~~--~~~~~~it 325 (657)
..|++. +.-||.+|+---..-+ +.-.++. + .++ ..+...++
T Consensus 176 -----ELGl~d----------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~~~~ 240 (332)
T PF08841_consen 176 -----ELGLED----------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPGDLS 240 (332)
T ss_dssp -----HCT-S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESSTS-
T ss_pred -----hhCCCC----------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCCcc
Confidence 234322 1457777764211100 0001110 0 001 11122233
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHcC--CCCCCcceEEEecCccCcHHHHHHHHhhcCCC-------CCCCCCCchhh
Q 006194 326 RARFEELNMDLFKKT-MGPVKKALEDAG--LKKTDIREIVLVGGSTRIPKIQQLLKDFFDGK-------EPSKGINPDEA 395 (657)
Q Consensus 326 r~~fe~~~~~~~~~~-~~~i~~~l~~~~--~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~-------~v~~~~~~~~a 395 (657)
-+++..+-+..-+++ ..-..++|++.. -+..+|+.|+|+||++.--=+.+++.+.+..- ++.-..-|..|
T Consensus 241 lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGPRNA 320 (332)
T PF08841_consen 241 LEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGPRNA 320 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTTSTH
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCchHH
Confidence 344443333333332 233445555432 22467899999999998888888888877332 34455678999
Q ss_pred hHhHHHHHH
Q 006194 396 VAHGAAVQG 404 (657)
Q Consensus 396 va~GAa~~a 404 (657)
||.|.++.-
T Consensus 321 VATGLvlsy 329 (332)
T PF08841_consen 321 VATGLVLSY 329 (332)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999998754
No 72
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=97.90 E-value=0.00036 Score=73.94 Aligned_cols=215 Identities=19% Similarity=0.177 Sum_probs=121.0
Q ss_pred HHHHHHHHHcCCceee----ecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeC---C----eEEEEEEeCC
Q 006194 184 QATKDAGIIAGLNVAR----IINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDN---G----VFEVLATSGD 252 (657)
Q Consensus 184 ~~l~~Aa~~AGl~~~~----li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~---~----~~~v~~~~~~ 252 (657)
..+.++|...||+.-. -+-+.-|.++..+-.. ..-|++=+|-+|+++..-+-.. | ....+-...-
T Consensus 232 ~Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~~----~~~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~Pg~~ 307 (544)
T COG1069 232 GLTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGAQ----PGSLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGLW 307 (544)
T ss_pred ccCHHHHHHhCCCCCcEEeccceeccccccccccCC----CCeEEEEeccceEEEEecCCceecCccccccccccCcchh
Confidence 3556788888886322 2334444444433222 2234445677777776654321 1 1111111222
Q ss_pred CCCccchhhHHHHHHHHHHHH---------hhcCCCCCCCHHHHHHHHHHHHHHHHHccCCceeEEEEeeccCC------
Q 006194 253 THLGGEDFDHRVMDYFIKLIK---------KKYNKDISKDNKAIGKLRRECERAKRALSSQHQVRVEIESLFDG------ 317 (657)
Q Consensus 253 ~~lGG~~~d~~l~~~l~~~~~---------~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~l~~~------ 317 (657)
..-||+.-.-.+++||.+... .+++..+ ......++..-+++.+...+.... .+.++.+.++
T Consensus 308 ~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~-l~~l~~f~GNRsP~aD 384 (544)
T COG1069 308 LYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEI--YESLAQRLELLTEAAAAIPPLASG-LHVLDWFNGNRSPLAD 384 (544)
T ss_pred hhcccchhhhHHHHHHHHhCCcccchhhccchhhhHH--HHHHHHHHHHHHhhHhccCcccCC-cEecccccCCcCCCCC
Confidence 345888888888999766521 1111111 012233444444555544432221 2333333222
Q ss_pred -------ceeEEEecHHHHHHHHHHHHHHH---HHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCC
Q 006194 318 -------VDFSEPLTRARFEELNMDLFKKT---MGPVKKALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPS 387 (657)
Q Consensus 318 -------~~~~~~itr~~fe~~~~~~~~~~---~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~ 387 (657)
.++++.-+.+.+-.+....++.+ ...|-+++++.| ..|+.|+.+||..+.|.+.+.+.+.. ++++.
T Consensus 385 p~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g---~~Id~l~~sGG~~KN~llmql~aDvt-g~~v~ 460 (544)
T COG1069 385 PRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQG---IAIDTLFASGGIRKNPLLMQLYADVT-GRPVV 460 (544)
T ss_pred ccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcC---CeeeEEEecCCcccCHHHHHHHHHhc-CCeEE
Confidence 12333444554445444444444 345566666655 46899999999999999999999999 67776
Q ss_pred CCCCchhhhHhHHHHHHhhhcCC
Q 006194 388 KGINPDEAVAHGAAVQGGILSGE 410 (657)
Q Consensus 388 ~~~~~~~ava~GAa~~a~~~~~~ 410 (657)
.+ ..++++++|+|+.|+.-.+.
T Consensus 461 i~-~s~~a~llGsAm~~avAag~ 482 (544)
T COG1069 461 IP-ASDQAVLLGAAMFAAVAAGV 482 (544)
T ss_pred ee-cccchhhhHHHHHHHHHhcc
Confidence 66 67889999999999877654
No 73
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=97.79 E-value=0.00057 Score=70.55 Aligned_cols=208 Identities=18% Similarity=0.166 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHH-HHcCCceeeecchhHHHHHHhccccCCCcceEEEEE
Q 006194 148 SAMILQKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKDAG-IIAGLNVARIINEPTAAAIAYGLDKKGGEMNILVYD 226 (657)
Q Consensus 148 ~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D 226 (657)
+..+..|+...-.. .......+++|-|..+....|+.+-+.. +..+.+.+.+ ..-|.. |+..+ .+=+|+|
T Consensus 81 me~iw~~if~~~L~-~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yv--a~qavl--ya~g~----ttG~VvD 151 (372)
T KOG0676|consen 81 MEKIWHHLFYSELL-VAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYV--AIQAVL--YASGR----TTGLVVD 151 (372)
T ss_pred HHHHHHHHHHHhhc-cCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHH--HHHHHH--HHcCC----eeEEEEE
Confidence 35566665521111 1123357899999999999998887653 3333333333 223323 43332 2458999
Q ss_pred ecCCeeEE-EEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHHHHHHHhhcCCCCCC-CHHHHHHHHHHHHHHHHHccCC
Q 006194 227 LGGGTFDV-SILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFIKLIKKKYNKDISK-DNKAIGKLRRECERAKRALSSQ 304 (657)
Q Consensus 227 ~Gggt~dv-sv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~-~~~~~~~L~~~~e~~K~~Ls~~ 304 (657)
+|.|-+++ -+++-. .+........+||++++.-+...|.+ .|..... ..+ .-++.+|+.++-.
T Consensus 152 ~G~gvt~~vPI~eG~----~lp~ai~~ldl~G~dlt~~l~~~L~~-----~g~s~~~~~~~------eIv~diKeklCyv 216 (372)
T KOG0676|consen 152 SGDGVTHVVPIYEGY----ALPHAILRLDLAGRDLTDYLLKQLRK-----RGYSFTTSAEF------EIVRDIKEKLCYV 216 (372)
T ss_pred cCCCceeeeeccccc----ccchhhheecccchhhHHHHHHHHHh-----cccccccccHH------HHHHHhHhhhccc
Confidence 99997654 444321 12222344689999999866666544 2212211 111 1233344433211
Q ss_pred c------------eeEEEEee-ccCCceeEEEecHHHHH---HHHHHHH-----HHHHHHHHHHHHHcC--CCCCCcceE
Q 006194 305 H------------QVRVEIES-LFDGVDFSEPLTRARFE---ELNMDLF-----KKTMGPVKKALEDAG--LKKTDIREI 361 (657)
Q Consensus 305 ~------------~~~~~i~~-l~~~~~~~~~itr~~fe---~~~~~~~-----~~~~~~i~~~l~~~~--~~~~~i~~V 361 (657)
. ...+.... +-++.. +.+.-+.|. -+++|-+ ..+.+.+-+.+-++. +.+.-...|
T Consensus 217 ald~~~e~~~~~~~~~l~~~y~lPDg~~--i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~ni 294 (372)
T KOG0676|consen 217 ALDFEEEEETANTSSSLESSYELPDGQK--ITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENI 294 (372)
T ss_pred ccccchhhhcccccccccccccCCCCCE--EecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhhe
Confidence 1 11111110 222222 444443332 2222221 222333333333332 223335789
Q ss_pred EEecCccCcHHHHHHHHhhc
Q 006194 362 VLVGGSTRIPKIQQLLKDFF 381 (657)
Q Consensus 362 ~LvGG~sr~p~v~~~l~~~f 381 (657)
+|+||++-.|.+.+.+.+.+
T Consensus 295 vLsGGtT~~pGl~~Rl~kEl 314 (372)
T KOG0676|consen 295 VLSGGTTMFPGLADRLQKEL 314 (372)
T ss_pred EEeCCcccchhHHHHHHHHH
Confidence 99999999999999888766
No 74
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=97.41 E-value=0.0071 Score=57.81 Aligned_cols=221 Identities=20% Similarity=0.213 Sum_probs=124.6
Q ss_pred CcEEEEeCCCCCHHHHHHHHHH-HHHcCCceeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEE
Q 006194 168 KDAVVTVPAYFNDAQRQATKDA-GIIAGLNVARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEV 246 (657)
Q Consensus 168 ~~~vitVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v 246 (657)
..+.+|-|..-....|+.+.+. .+..|+..+.+.-...-+.++-|+.. =+|+|-|.|-+-+.-+--. -.+
T Consensus 102 ~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~t------GvVvDSGDGVTHi~PVye~-~~l-- 172 (389)
T KOG0677|consen 102 CKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLT------GVVVDSGDGVTHIVPVYEG-FVL-- 172 (389)
T ss_pred CeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccc------eEEEecCCCeeEEeeeecc-eeh--
Confidence 4678899998888888887774 57788887666443333333333322 3789999998887644211 000
Q ss_pred EEEeCCCCCccchhhHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHccCC-----------ceeEEEEee--
Q 006194 247 LATSGDTHLGGEDFDHRVMDYFIKLIKKKYNKDISKDNKAIGKLRRECERAKRALSSQ-----------HQVRVEIES-- 313 (657)
Q Consensus 247 ~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~-----------~~~~~~i~~-- 313 (657)
-.-.+.-.+.|+++++-|.+.+..+ .|...-+.+- +....+|+.|+-. -++++-++.
T Consensus 173 ~HLtrRldvAGRdiTryLi~LLl~r---GYafN~tADF-------ETVR~iKEKLCYisYd~e~e~kLalETTvLv~~Yt 242 (389)
T KOG0677|consen 173 PHLTRRLDVAGRDITRYLIKLLLRR---GYAFNHTADF-------ETVREIKEKLCYISYDLELEQKLALETTVLVESYT 242 (389)
T ss_pred hhhhhhccccchhHHHHHHHHHHhh---ccccccccch-------HHHHHHHhhheeEeechhhhhHhhhhheeeeeeee
Confidence 0112335688999999888886533 2222222221 3334445544311 122232222
Q ss_pred ccCCceeEEEecHHHHH---HHHHHHH-----HHHHHHHHHHHHHcCCC--CCCcceEEEecCccCcHHHHHHHHhhcC-
Q 006194 314 LFDGVDFSEPLTRARFE---ELNMDLF-----KKTMGPVKKALEDAGLK--KTDIREIVLVGGSTRIPKIQQLLKDFFD- 382 (657)
Q Consensus 314 l~~~~~~~~~itr~~fe---~~~~~~~-----~~~~~~i~~~l~~~~~~--~~~i~~V~LvGG~sr~p~v~~~l~~~f~- 382 (657)
+.+|. .+.+--+.|| .+++|.+ ..+.+++-.+++.+.++ ..-..+|+|.||++--|.+...|++.+.
T Consensus 243 LPDGR--vIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkq 320 (389)
T KOG0677|consen 243 LPDGR--VIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQ 320 (389)
T ss_pred cCCCc--EEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHH
Confidence 22332 3444455554 4555543 22345555666665544 2224789999999999998887766441
Q ss_pred --------C---------CCCCCCCCchhhhHhHHHHHHhhhcC
Q 006194 383 --------G---------KEPSKGINPDEAVAHGAAVQGGILSG 409 (657)
Q Consensus 383 --------~---------~~v~~~~~~~~ava~GAa~~a~~~~~ 409 (657)
+ .++..+..-...|-+|.|..|.++..
T Consensus 321 lyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD 364 (389)
T KOG0677|consen 321 LYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKD 364 (389)
T ss_pred HHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcC
Confidence 1 11223333345677788888877654
No 75
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=97.39 E-value=0.041 Score=59.53 Aligned_cols=84 Identities=18% Similarity=0.264 Sum_probs=54.5
Q ss_pred eeEEEecHHHHHHHHHHH---HHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCC---------
Q 006194 319 DFSEPLTRARFEELNMDL---FKKTMGPVKKALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEP--------- 386 (657)
Q Consensus 319 ~~~~~itr~~fe~~~~~~---~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v--------- 386 (657)
++.+.|.-.++++.+-.. +......+-+++.. -+.|.++|+|--+|.|.++..++...+ .++
T Consensus 742 d~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~-----y~cDVlLlTGRPsrlPgvqalfr~~~p-vp~~rilpl~~Y 815 (1014)
T COG4457 742 DVPLAIDLSQLHECFLSGDYDITGVFDALCEAINH-----YDCDVLLLTGRPSRLPGVQALFRHLQP-VPVNRILPLDDY 815 (1014)
T ss_pred ccceeccHHHHHHHHhhCcccccchHHHHHHHHhh-----hcccEEEEcCCcccCccHHHHHhhcCC-CCCCceEeccce
Confidence 444556666665544333 33344444445443 346789999999999999999988662 111
Q ss_pred -----------CCCCCchhhhHhHHHHHHhhhc
Q 006194 387 -----------SKGINPDEAVAHGAAVQGGILS 408 (657)
Q Consensus 387 -----------~~~~~~~~ava~GAa~~a~~~~ 408 (657)
.+--||...+|.||-+.+..+.
T Consensus 816 rvg~WYPF~k~grIddPKtTAaVGAMLC~Lsl~ 848 (1014)
T COG4457 816 RVGTWYPFRKQGRIDDPKTTAAVGAMLCALSLE 848 (1014)
T ss_pred eccceecccccCcCCCcchHHHHHHHHHHHHhh
Confidence 1223899999999988775543
No 76
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=97.18 E-value=0.00049 Score=66.14 Aligned_cols=75 Identities=25% Similarity=0.371 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC-CCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHHHhh
Q 006194 330 EELNMDLFKKTMGPVKKALEDAGLK-KTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQGGI 406 (657)
Q Consensus 330 e~~~~~~~~~~~~~i~~~l~~~~~~-~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~a~~ 406 (657)
.++++-+++.+.-.+...++...-. ...++.|+++||.++++.+.+.+.+.| +.++... +..++.|+|||+.|+.
T Consensus 121 ~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl-~~~V~~~-~~~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 121 ADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVL-GRPVVRP-EVEEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHH-TSEEEEE-SSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHh-CCceEeC-CCCchHHHHHHHHHHh
Confidence 4444555555555544444433111 234899999999999999999999999 7887766 4489999999999874
No 77
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.14 E-value=0.0056 Score=64.72 Aligned_cols=87 Identities=21% Similarity=0.234 Sum_probs=53.9
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCceeee---cchhHHHHHHhccccC--CCcceEEEEEecCCeeEEEEEEEeCCe
Q 006194 169 DAVVTVPAYFNDAQRQATKDAGIIAGLNVARI---INEPTAAAIAYGLDKK--GGEMNILVYDLGGGTFDVSILTIDNGV 243 (657)
Q Consensus 169 ~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~~l---i~Ep~Aaal~y~~~~~--~~~~~vlv~D~Gggt~dvsv~~~~~~~ 243 (657)
-+.||==+-=.++.|..+..-+..||==++.- --|+.-|+-..|-..- .....|+=+|+||||+.+++++-.
T Consensus 87 AVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~G--- 163 (473)
T PF06277_consen 87 AVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDNG--- 163 (473)
T ss_pred cEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEECC---
Confidence 35667666667777887777777776322211 1244444333322211 135678889999999999999854
Q ss_pred EEEEEEeCCCCCccchh
Q 006194 244 FEVLATSGDTHLGGEDF 260 (657)
Q Consensus 244 ~~v~~~~~~~~lGG~~~ 260 (657)
+++++.. -++||+.|
T Consensus 164 -~v~~T~c-l~IGGRLi 178 (473)
T PF06277_consen 164 -EVIDTAC-LDIGGRLI 178 (473)
T ss_pred -EEEEEEE-EeeccEEE
Confidence 2444443 67899876
No 78
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=97.12 E-value=0.045 Score=54.84 Aligned_cols=47 Identities=19% Similarity=0.086 Sum_probs=38.8
Q ss_pred CCcceEEEecC-ccCcHHHHHHHHhhc--CCCCCCCCCCchhhhHhHHHH
Q 006194 356 TDIREIVLVGG-STRIPKIQQLLKDFF--DGKEPSKGINPDEAVAHGAAV 402 (657)
Q Consensus 356 ~~i~~V~LvGG-~sr~p~v~~~l~~~f--~~~~v~~~~~~~~ava~GAa~ 402 (657)
..+..|+++|| .+..|.+++.+...+ -+.++..+.|+...+|+||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 45788999999 677999999998876 235667778999999999986
No 79
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=97.04 E-value=0.0051 Score=64.32 Aligned_cols=121 Identities=20% Similarity=0.168 Sum_probs=86.5
Q ss_pred eEeCHHHHHHHHHHHHHHHHHHHhCCCCC-----cEEEEeCCCCCHHHHHHH-HHHHHHcCCceeeecchhHHHHHHhcc
Q 006194 140 KVFSPEEISAMILQKMKETAEAYLGKKIK-----DAVVTVPAYFNDAQRQAT-KDAGIIAGLNVARIINEPTAAAIAYGL 213 (657)
Q Consensus 140 ~~~~~~el~~~~L~~l~~~a~~~~~~~~~-----~~vitVPa~~~~~qr~~l-~~Aa~~AGl~~~~li~Ep~Aaal~y~~ 213 (657)
..++..++++++-+-+.-.....+..+.+ .+|+-||-.|.....+.+ .-.....||....++-|+.|+.+..|+
T Consensus 195 ~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGl 274 (618)
T KOG0797|consen 195 PYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGL 274 (618)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCc
Confidence 55677777777655444444555554443 689999999987775544 445677899999999999999998887
Q ss_pred ccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHHH
Q 006194 214 DKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFI 269 (657)
Q Consensus 214 ~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~ 269 (657)
.. -.|||+|+-++.++.++-. +. ...+.-.-..||.||++.|+-++.
T Consensus 275 ss------~CVVdiGAQkTsIaCVEdG--vs-~~ntri~L~YGGdDitr~f~~ll~ 321 (618)
T KOG0797|consen 275 SS------ACVVDIGAQKTSIACVEDG--VS-LPNTRIILPYGGDDITRCFLWLLR 321 (618)
T ss_pred cc------eeEEEccCcceeEEEeecC--cc-ccCceEEeccCCchHHHHHHHHHH
Confidence 63 4799999999999888743 11 111222256899999999886654
No 80
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=96.86 E-value=0.0028 Score=70.89 Aligned_cols=89 Identities=22% Similarity=0.262 Sum_probs=67.2
Q ss_pred eEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhH
Q 006194 320 FSEPLTRARFEELNMDLFKKTMGPVKKALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHG 399 (657)
Q Consensus 320 ~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~G 399 (657)
++..-+|.++.++++-+++.+.-.++..++...-....++.|.++||+++++.+.+.+.+.+ +.+|.... ..++.++|
T Consensus 406 l~~~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~-~~e~~alG 483 (541)
T TIGR01315 406 LSMDRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADAC-DMPVLIPY-VNEAVLHG 483 (541)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHH-CCeeEecC-hhHHHHHH
Confidence 34455677777777777777776666655543222235789999999999999999999999 78887764 45688999
Q ss_pred HHHHHhhhcCC
Q 006194 400 AAVQGGILSGE 410 (657)
Q Consensus 400 Aa~~a~~~~~~ 410 (657)
||+.|+.-.+.
T Consensus 484 aA~lA~~~~G~ 494 (541)
T TIGR01315 484 AAMLGAKAAGT 494 (541)
T ss_pred HHHHHHHhcCc
Confidence 99999876654
No 81
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=96.72 E-value=0.25 Score=49.90 Aligned_cols=71 Identities=21% Similarity=0.261 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhc----CCCCCCCCCCchhhhHhHHHHHH
Q 006194 331 ELNMDLFKKTMGPVKKALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFF----DGKEPSKGINPDEAVAHGAAVQG 404 (657)
Q Consensus 331 ~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f----~~~~v~~~~~~~~ava~GAa~~a 404 (657)
++++...+.+...+...+++...... .|+|+||..+.+.+++.+.+.+ +..++..+..|....|.|||++|
T Consensus 197 ~Il~~a~~~la~~i~~~~~~~~~~~~---~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 197 DILAEAADELAELIKAVLKRLGPEKE---PVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTCCCC---SEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCC---eEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 45555555666666666665543322 2999999999977777664444 34455667789999999999986
No 82
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=96.63 E-value=0.086 Score=52.36 Aligned_cols=97 Identities=13% Similarity=0.117 Sum_probs=53.6
Q ss_pred CcEEEEeCCCCCH-HHHHHHHHHHHHcCCceeeecchhHHHHHHhc---cccCC----CcceEEEEEecCCeeEEEEEEE
Q 006194 168 KDAVVTVPAYFND-AQRQATKDAGIIAGLNVARIINEPTAAAIAYG---LDKKG----GEMNILVYDLGGGTFDVSILTI 239 (657)
Q Consensus 168 ~~~vitVPa~~~~-~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~---~~~~~----~~~~vlv~D~Gggt~dvsv~~~ 239 (657)
.++++|-|.+--+ -|.....-..+.-++..+ ..-+.|+..++. .+..+ ...+.+|+|-|.+-|-+.-+-.
T Consensus 94 ~~ivlTep~~~~psi~~~t~eilFEey~fd~v--~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v~ 171 (400)
T KOG0680|consen 94 HNIVLTEPCMTFPSIQEHTDEILFEEYQFDAV--LKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVVK 171 (400)
T ss_pred ceEEEecccccccchhhhHHHHHHHHhccceE--eecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhhc
Confidence 4789999965433 333333334455565543 333333333322 22222 3558999999998777653322
Q ss_pred eCCeEEEEEEeCCCCCccchhhHHHHHHHH
Q 006194 240 DNGVFEVLATSGDTHLGGEDFDHRVMDYFI 269 (657)
Q Consensus 240 ~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~ 269 (657)
. .....+.. ....||..++..|.+++.
T Consensus 172 g--~~~~qaV~-RiDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 172 G--IPYYQAVK-RIDVGGKALTNLLKETIS 198 (400)
T ss_pred C--cchhhceE-EeecchHHHHHHHHHHhh
Confidence 2 11111112 367999999999888764
No 83
>PLN02669 xylulokinase
Probab=96.59 E-value=0.0064 Score=67.94 Aligned_cols=77 Identities=16% Similarity=0.253 Sum_probs=56.4
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHH
Q 006194 324 LTRARFEELNMDLFKKTMGPVKKALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQ 403 (657)
Q Consensus 324 itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~ 403 (657)
.+|.+ +++.+++.+.-.++..++..+.. ..++.|+++||+|+++.+.+.+.+.| +.+|..... .++.|+|||+.
T Consensus 416 ~~~~~---~~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVl-g~pV~~~~~-~ea~alGAA~~ 489 (556)
T PLN02669 416 FDPPS---EVRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIF-GCDVYTVQR-PDSASLGAALR 489 (556)
T ss_pred CCHHH---HHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHc-CCCeEecCC-CCchHHHHHHH
Confidence 35554 44555555555555555544432 45789999999999999999999999 778776544 47889999999
Q ss_pred Hhh
Q 006194 404 GGI 406 (657)
Q Consensus 404 a~~ 406 (657)
|+.
T Consensus 490 A~~ 492 (556)
T PLN02669 490 AAH 492 (556)
T ss_pred HHH
Confidence 976
No 84
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=96.50 E-value=0.14 Score=56.54 Aligned_cols=77 Identities=22% Similarity=0.245 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHcCCceeeecchhHHHHHHh-ccccCC-CcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccch
Q 006194 182 QRQATKDAGIIAGLNVARIINEPTAAAIAY-GLDKKG-GEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGED 259 (657)
Q Consensus 182 qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y-~~~~~~-~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~ 259 (657)
....+..+-+..|+++ ++++..+-|.+.| |..... .....+|+|+|||++.+++++-. .+ . .....++|.-.
T Consensus 93 ~~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~--~~--~-~~~Sl~lG~vr 166 (496)
T PRK11031 93 ADEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGA--QA--T-SLFSLSMGCVT 166 (496)
T ss_pred HHHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCC--ce--e-eeeEEeccchH
Confidence 3445555666779996 6666665555555 433322 23458999999999999987632 21 1 12335788877
Q ss_pred hhHHH
Q 006194 260 FDHRV 264 (657)
Q Consensus 260 ~d~~l 264 (657)
+.+.+
T Consensus 167 l~e~f 171 (496)
T PRK11031 167 WLERY 171 (496)
T ss_pred HHHHh
Confidence 65543
No 85
>PRK03011 butyrate kinase; Provisional
Probab=96.16 E-value=0.057 Score=56.53 Aligned_cols=47 Identities=26% Similarity=0.278 Sum_probs=36.4
Q ss_pred CcceEEEecCccCcHHHHHHHHhhcC---CCCCCCCCCchhhhHhHHHHH
Q 006194 357 DIREIVLVGGSTRIPKIQQLLKDFFD---GKEPSKGINPDEAVAHGAAVQ 403 (657)
Q Consensus 357 ~i~~V~LvGG~sr~p~v~~~l~~~f~---~~~v~~~~~~~~ava~GAa~~ 403 (657)
+++.|++.||.+..+.+++.|++.+. ...+....+..+|.+.||+..
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~rv 344 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALRV 344 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence 68999999999999999999888762 223444556668999998754
No 86
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=96.02 E-value=0.02 Score=62.63 Aligned_cols=84 Identities=23% Similarity=0.212 Sum_probs=60.3
Q ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhH
Q 006194 321 SEPLTRARFEELNMDLFKKTMGPVKKALEDA-GLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHG 399 (657)
Q Consensus 321 ~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~-~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~G 399 (657)
+..-+|.++-..+-+-+.-....+.+.|++. +. .++.|.++||+++++.+.|.+.+.+ +.+|... . .++.|+|
T Consensus 353 ~~~~~~~~l~RAv~Egva~~~r~~~e~l~~~~~~---~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~-~-~e~~a~G 426 (454)
T TIGR02627 353 PIPESDAELARCIFDSLALLYRQVLLELAELRGK---PISQLHIVGGGSQNAFLNQLCADAC-GIRVIAG-P-VEASTLG 426 (454)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CcCEEEEECChhhhHHHHHHHHHHh-CCceEcC-C-chHHHHH
Confidence 3345777765544444443444445555543 32 4789999999999999999999999 7888643 3 6789999
Q ss_pred HHHHHhhhcCC
Q 006194 400 AAVQGGILSGE 410 (657)
Q Consensus 400 Aa~~a~~~~~~ 410 (657)
||+.|+.-.+.
T Consensus 427 aA~~a~~~~G~ 437 (454)
T TIGR02627 427 NIGVQLMALDE 437 (454)
T ss_pred HHHHHHHhcCC
Confidence 99999876654
No 87
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=96.00 E-value=0.024 Score=60.96 Aligned_cols=79 Identities=25% Similarity=0.331 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCC-CCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHHHhhhc
Q 006194 330 EELNMDLFKKTMGPVKKALEDAGLKK-TDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQGGILS 408 (657)
Q Consensus 330 e~~~~~~~~~~~~~i~~~l~~~~~~~-~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~a~~~~ 408 (657)
+.+..-.++.+.-.++..|+....+. ..|+.+.+.||.|+.|.+.+.+.+.+ +.++.++.+++. ++.|||+.|+..+
T Consensus 386 ~hia~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~-g~pv~~p~~~e~-~~~GaA~l~~~a~ 463 (516)
T KOG2517|consen 386 EHLARAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADIL-GLPVVRPQDVEA-VALGAAMLAGAAS 463 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHh-CCccccccchhH-HHHHHHHHHHhhc
Confidence 44444555666555555555444343 57899999999999999999999999 799999888877 9999999999887
Q ss_pred CC
Q 006194 409 GE 410 (657)
Q Consensus 409 ~~ 410 (657)
+.
T Consensus 464 ~~ 465 (516)
T KOG2517|consen 464 GK 465 (516)
T ss_pred CC
Confidence 65
No 88
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=95.85 E-value=0.033 Score=61.14 Aligned_cols=80 Identities=21% Similarity=0.210 Sum_probs=57.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHH
Q 006194 325 TRARFEELNMDLFKKTMGPVKKALEDA-GLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQ 403 (657)
Q Consensus 325 tr~~fe~~~~~~~~~~~~~i~~~l~~~-~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~ 403 (657)
+|.++-..+-+-+.-....+.+.|+.. + ..++.|.++||+++++.+.+.+.+.+ +.+|... . .++.++|||+.
T Consensus 345 ~~~~l~RAvlEgva~~~r~~l~~l~~~~g---~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~-~-~ea~alGaa~~ 418 (471)
T PRK10640 345 SDAELARCIFDSLALLYADVLHELAQLRG---EPFSQLHIVGGGCQNALLNQLCADAC-GIRVIAG-P-VEASTLGNIGI 418 (471)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcceEEEECChhhhHHHHHHHHHHh-CCCeeeC-C-hhHHHHHHHHH
Confidence 566655544444443444444555543 3 24788999999999999999999999 7888654 2 37999999999
Q ss_pred HhhhcCC
Q 006194 404 GGILSGE 410 (657)
Q Consensus 404 a~~~~~~ 410 (657)
|+.-.|.
T Consensus 419 a~~a~G~ 425 (471)
T PRK10640 419 QLMTLDE 425 (471)
T ss_pred HHHHcCC
Confidence 9876664
No 89
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=95.74 E-value=0.023 Score=63.36 Aligned_cols=81 Identities=20% Similarity=0.194 Sum_probs=56.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHH
Q 006194 325 TRARFEELNMDLFKKTMGPVKKALEDA-GLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQ 403 (657)
Q Consensus 325 tr~~fe~~~~~~~~~~~~~i~~~l~~~-~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~ 403 (657)
+|.++-..+-+-+.-....+.+.+++. +. .++.|.++||+++++.+.+.+.+.| +.++.... ..++.++|||+.
T Consensus 379 ~~~~~~RAvlEgia~~~~~~l~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~-~~e~~alGaA~l 453 (520)
T PRK10939 379 NKATLFRALEENAAIVSACNLQQIAAFSGV---FPSSLVFAGGGSKGKLWSQILADVT-GLPVKVPV-VKEATALGCAIA 453 (520)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEeCCcccCHHHHHHHHHhc-CCeeEEec-ccCchHHHHHHH
Confidence 555554443333333333444444442 33 4789999999999999999999999 88887664 446889999999
Q ss_pred HhhhcCC
Q 006194 404 GGILSGE 410 (657)
Q Consensus 404 a~~~~~~ 410 (657)
|+.-.|.
T Consensus 454 A~~~~G~ 460 (520)
T PRK10939 454 AGVGAGI 460 (520)
T ss_pred HHHHhCC
Confidence 9876654
No 90
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=95.73 E-value=0.62 Score=49.54 Aligned_cols=86 Identities=17% Similarity=0.183 Sum_probs=50.6
Q ss_pred ceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHh-hcCCCCCCCCCCchhhh
Q 006194 318 VDFSEPLTRARFEELNMDLFKKTMGPVKKALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKD-FFDGKEPSKGINPDEAV 396 (657)
Q Consensus 318 ~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~-~f~~~~v~~~~~~~~av 396 (657)
..-.+.||..++.++.. .-..+..-++-.|++++++..+|++|+|.||+.+---..+.+.= .+|.....+..-.-.++
T Consensus 289 ~~~~i~itq~DIr~~ql-AKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~iGLlP~~~~~kv~~~GN~a 367 (412)
T PF14574_consen 289 IGDDIYITQKDIREFQL-AKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIRIGLLPDVPAEKVRFVGNAA 367 (412)
T ss_dssp SSS-EEEEHHHHHHHHH-HHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHHTTSS--S-GGGEEEEC-HH
T ss_pred CCCCEEEeHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhhcCCCCCccccCEEEECcHH
Confidence 44567899999977532 33445667788899999999999999999999997777777653 23322111111122355
Q ss_pred HhHHHHHH
Q 006194 397 AHGAAVQG 404 (657)
Q Consensus 397 a~GAa~~a 404 (657)
-.||.+..
T Consensus 368 l~GA~~~L 375 (412)
T PF14574_consen 368 LAGARMAL 375 (412)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66776654
No 91
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.73 E-value=0.19 Score=54.66 Aligned_cols=93 Identities=23% Similarity=0.178 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCC---CCHHHHHHHHHHHHHcCCceeeecchhHHHHHHhccccCCC-cce
Q 006194 146 EISAMILQKMKETAEAYLGKKIKDAVVTVPAY---FNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGG-EMN 221 (657)
Q Consensus 146 el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~---~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~-~~~ 221 (657)
+.+...+..|+..++...+..+.++.+ |-+. --.+.-+.+..+-+..|+++-.+=-|-+|--.++|.-..-. ...
T Consensus 52 eai~R~~~aL~~f~e~~~~~~~~~v~~-vATsA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~ 130 (492)
T COG0248 52 EAIERALSALKRFAELLDGFGAEEVRV-VATSALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGD 130 (492)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCEEEE-ehhHHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCC
Confidence 344555555555555554555555322 2111 11223456667777889986444445555444444444332 677
Q ss_pred EEEEEecCCeeEEEEEEE
Q 006194 222 ILVYDLGGGTFDVSILTI 239 (657)
Q Consensus 222 vlv~D~Gggt~dvsv~~~ 239 (657)
.+|+|+|||+|.+++..-
T Consensus 131 ~lv~DIGGGStEl~~g~~ 148 (492)
T COG0248 131 GLVIDIGGGSTELVLGDN 148 (492)
T ss_pred EEEEEecCCeEEEEEecC
Confidence 999999999999999873
No 92
>PRK10854 exopolyphosphatase; Provisional
Probab=95.47 E-value=0.25 Score=54.71 Aligned_cols=75 Identities=21% Similarity=0.295 Sum_probs=45.4
Q ss_pred HHHHHHHHHHcCCceeeecchhHHHHHHh-ccccCC-CcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchh
Q 006194 183 RQATKDAGIIAGLNVARIINEPTAAAIAY-GLDKKG-GEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDF 260 (657)
Q Consensus 183 r~~l~~Aa~~AGl~~~~li~Ep~Aaal~y-~~~~~~-~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~ 260 (657)
...+..+-+..|+++ ++++..+-|.+.| |..... ..+..+|+|+|||++.+++++-.. +.... + ..+|.-.+
T Consensus 99 ~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~--~~~~~-S--~~lG~vrl 172 (513)
T PRK10854 99 TDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFE--PILVE-S--RRMGCVSF 172 (513)
T ss_pred HHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCC--eeEeE-E--EecceeeH
Confidence 334445556679986 6666666665555 443322 234689999999999999986432 11111 1 26676665
Q ss_pred hHH
Q 006194 261 DHR 263 (657)
Q Consensus 261 d~~ 263 (657)
.+.
T Consensus 173 ~e~ 175 (513)
T PRK10854 173 AQL 175 (513)
T ss_pred Hhh
Confidence 554
No 93
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=95.41 E-value=0.045 Score=56.92 Aligned_cols=56 Identities=27% Similarity=0.397 Sum_probs=48.2
Q ss_pred HHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHHHhh
Q 006194 349 EDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQGGI 406 (657)
Q Consensus 349 ~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~a~~ 406 (657)
+..+....+...|+++||.||...|-+.|.++| +.++..- +..+++|+|+|+.|+.
T Consensus 434 ~~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf-~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 434 EPLGFKSNPPTRILVTGGASRNEAILQIIADVF-GAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred ccccCCCCCCceEEEecCccccHHHHHHHHHHh-CCCeEee-cCCchhhHHHHHHHHH
Confidence 345666667899999999999999999999999 7777765 7788999999999864
No 94
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=94.89 E-value=0.27 Score=49.17 Aligned_cols=87 Identities=22% Similarity=0.196 Sum_probs=46.2
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCceeee---cchhHHHHHHhcccc--CCCcceEEEEEecCCeeEEEEEEEeCCe
Q 006194 169 DAVVTVPAYFNDAQRQATKDAGIIAGLNVARI---INEPTAAAIAYGLDK--KGGEMNILVYDLGGGTFDVSILTIDNGV 243 (657)
Q Consensus 169 ~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~~l---i~Ep~Aaal~y~~~~--~~~~~~vlv~D~Gggt~dvsv~~~~~~~ 243 (657)
.+.||=-+-=....|..+..-...||==++.- --|+.-|.-..+-.. +....+++=+|+||||+..+++.-.+
T Consensus 89 AvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~Seqr~t~v~NlDIGGGTtN~slFD~Gk-- 166 (473)
T COG4819 89 AVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEQRLTRVLNLDIGGGTTNYSLFDAGK-- 166 (473)
T ss_pred cEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchhhhhceEEEEEeccCCccceeeecccc--
Confidence 35566555555566666655444554222111 123333322222111 11355688899999999999987542
Q ss_pred EEEEEEeCCCCCccchh
Q 006194 244 FEVLATSGDTHLGGEDF 260 (657)
Q Consensus 244 ~~v~~~~~~~~lGG~~~ 260 (657)
+..+. .-++||+-+
T Consensus 167 --v~dTa-CLdiGGRLi 180 (473)
T COG4819 167 --VSDTA-CLDIGGRLI 180 (473)
T ss_pred --cccce-eeecCcEEE
Confidence 22333 256788765
No 95
>PRK09557 fructokinase; Reviewed
Probab=94.88 E-value=4.4 Score=41.53 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=25.9
Q ss_pred HcCCceeeecchhHHHHHHhccccCC-CcceEEEEEecCC
Q 006194 192 IAGLNVARIINEPTAAAIAYGLDKKG-GEMNILVYDLGGG 230 (657)
Q Consensus 192 ~AGl~~~~li~Ep~Aaal~y~~~~~~-~~~~vlv~D~Ggg 230 (657)
..|++ +.+.|+..|+|++-...... ..++++++.+|.|
T Consensus 95 ~~~~p-v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igtG 133 (301)
T PRK09557 95 RLNRE-VRLANDANCLAVSEAVDGAAAGKQTVFAVIIGTG 133 (301)
T ss_pred HHCCC-EEEccchhHHHHHHHHhcccCCCCcEEEEEEccc
Confidence 34776 57899999999876443222 3467777888755
No 96
>PF13941 MutL: MutL protein
Probab=94.87 E-value=0.12 Score=55.51 Aligned_cols=33 Identities=30% Similarity=0.623 Sum_probs=25.8
Q ss_pred EEEEEcCccceEEEEEE--CCeEEEEecCCCCcccceEE
Q 006194 34 VIGIDLGTTYSCVGVYR--NGRVEIIANDQGNRITPSWV 70 (657)
Q Consensus 34 viGIDlGTt~s~va~~~--~g~~~ii~~~~g~~~~Ps~v 70 (657)
++.+|||||++++..++ .+..+++. ....||.|
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig----~a~apTTv 36 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIG----QAEAPTTV 36 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEE----EEeCCCCc
Confidence 68999999999999998 77777773 34456655
No 97
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=94.86 E-value=0.46 Score=48.77 Aligned_cols=73 Identities=22% Similarity=0.224 Sum_probs=43.7
Q ss_pred HHHH-HHHHcCCceeeecchhHHHHHHh-ccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhH
Q 006194 185 ATKD-AGIIAGLNVARIINEPTAAAIAY-GLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDH 262 (657)
Q Consensus 185 ~l~~-Aa~~AGl~~~~li~Ep~Aaal~y-~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~ 262 (657)
.+.+ .-+..|+++ ++++..+-|.+.| +..........+++|+|||++.++.+.-. .+ . .....++|...+.+
T Consensus 89 ~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~--~~--~-~~~Sl~lG~vrl~e 162 (300)
T TIGR03706 89 EFLREAEAILGLPI-EVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDF--EP--G-EGVSLPLGCVRLTE 162 (300)
T ss_pred HHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCC--CE--e-EEEEEccceEEhHH
Confidence 3443 345579886 6777777666665 33222222235999999999999987532 21 1 12235677766655
Q ss_pred H
Q 006194 263 R 263 (657)
Q Consensus 263 ~ 263 (657)
.
T Consensus 163 ~ 163 (300)
T TIGR03706 163 Q 163 (300)
T ss_pred h
Confidence 4
No 98
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=94.82 E-value=0.07 Score=50.62 Aligned_cols=30 Identities=37% Similarity=0.324 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHcCCceeeecchhHHHHHH
Q 006194 181 AQRQATKDAGIIAGLNVARIINEPTAAAIA 210 (657)
Q Consensus 181 ~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~ 210 (657)
...+.+.++++.+||++..++.+|.|++.+
T Consensus 157 ~~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 157 SAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred HHHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 457788889999999999999999998753
No 99
>PRK09698 D-allose kinase; Provisional
Probab=94.77 E-value=4.5 Score=41.47 Aligned_cols=38 Identities=11% Similarity=-0.052 Sum_probs=25.7
Q ss_pred HcCCceeeecchhHHHHHHhccccCCCcceEEEEEecCC
Q 006194 192 IAGLNVARIINEPTAAAIAYGLDKKGGEMNILVYDLGGG 230 (657)
Q Consensus 192 ~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Ggg 230 (657)
..|++ +.+.|+..|+|++-.........+++++.+|.|
T Consensus 103 ~~~~p-v~v~NDa~aaa~~E~~~~~~~~~~~~~v~lgtG 140 (302)
T PRK09698 103 TLNCP-VFFSRDVNLQLLWDVKENNLTQQLVLGAYLGTG 140 (302)
T ss_pred HhCCC-EEEcchHhHHHHHHHHhcCCCCceEEEEEecCc
Confidence 35776 578999999887643332223457888888876
No 100
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=94.54 E-value=0.058 Score=47.05 Aligned_cols=46 Identities=24% Similarity=0.369 Sum_probs=25.9
Q ss_pred EEEEEecCCeeEEEEEEEe-CCeEEEEEEeCCCCCc--cchhh--HHHHHH
Q 006194 222 ILVYDLGGGTFDVSILTID-NGVFEVLATSGDTHLG--GEDFD--HRVMDY 267 (657)
Q Consensus 222 vlv~D~Gggt~dvsv~~~~-~~~~~v~~~~~~~~lG--G~~~d--~~l~~~ 267 (657)
++++|+|++++.+.+++.. .+.++++.....+..| +..+. +.+.+-
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~ 51 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKA 51 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHH
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHH
Confidence 5789999999999999973 3445555433222211 56665 555544
No 101
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=94.53 E-value=0.31 Score=51.90 Aligned_cols=122 Identities=11% Similarity=-0.044 Sum_probs=71.0
Q ss_pred EeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHH-HHHcCCceeeecchhHHHHHHhccccCCCc
Q 006194 141 VFSPEEISAMILQKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKDA-GIIAGLNVARIINEPTAAAIAYGLDKKGGE 219 (657)
Q Consensus 141 ~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~ 219 (657)
.++-.++...+|.|+..+....-..-...+++|-+..-...+|+.|.+. .+.-|++.+.+=-+..=+.+. ......+
T Consensus 90 VvtNwel~E~ilDY~F~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~h--N~~~~~~ 167 (645)
T KOG0681|consen 90 VVTNWELMEQILDYIFGKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYH--NYGKSSN 167 (645)
T ss_pred ccccHHHHHHHHHHHHHhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhh--ccCcccC
Confidence 4455677777777776653221111123578888877667788877764 566788876653332222221 1111134
Q ss_pred ceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHH
Q 006194 220 MNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDY 267 (657)
Q Consensus 220 ~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~ 267 (657)
..-+|+++|..+|.|-.+--+... +......++||.....-|.+.
T Consensus 168 ~~~liis~g~~~T~vipvldG~~i---l~~~kRiN~GG~qa~dYL~~L 212 (645)
T KOG0681|consen 168 KSGLIISMGHSATHVIPVLDGRLI---LKDVKRINWGGYQAGDYLSRL 212 (645)
T ss_pred cceEEEecCCCcceeEEEecCchh---hhcceeeccCcchHHHHHHHH
Confidence 468999999999988766533322 223344789998865444444
No 102
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=93.90 E-value=1.5 Score=43.08 Aligned_cols=48 Identities=27% Similarity=0.242 Sum_probs=37.2
Q ss_pred CCCcceEEEecCccCcHHHHHHHHhhcC---CCCCCCCCCchhhhHhHHHH
Q 006194 355 KTDIREIVLVGGSTRIPKIQQLLKDFFD---GKEPSKGINPDEAVAHGAAV 402 (657)
Q Consensus 355 ~~~i~~V~LvGG~sr~p~v~~~l~~~f~---~~~v~~~~~~~~ava~GAa~ 402 (657)
+..+|.|+|+||.++...+-+.|.+... ..-+.-..|-.+|-|.|+..
T Consensus 294 ~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lR 344 (358)
T COG3426 294 KGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALR 344 (358)
T ss_pred CCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHH
Confidence 4679999999999999999999988652 22344455677899999864
No 103
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=93.76 E-value=0.2 Score=52.99 Aligned_cols=86 Identities=21% Similarity=0.251 Sum_probs=63.2
Q ss_pred EEecHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCCC-CcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhH
Q 006194 322 EPLTRAR-FEELNMDLFKKTMGPVKKALEDAGLKKT-DIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHG 399 (657)
Q Consensus 322 ~~itr~~-fe~~~~~~~~~~~~~i~~~l~~~~~~~~-~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~G 399 (657)
+-+||.. -+++++..++.+.-...++++....+.. .++.+-+=||.+++.++.+...+.+ +.+|.++. -.|..|+|
T Consensus 365 ~Gltrgt~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDGG~s~n~~lmQfqADil-g~~V~Rp~-~~EtTAlG 442 (499)
T COG0554 365 FGLTRGTTKAHIARATLESIAYQTRDVLEAMEKDSGIKLTRLRVDGGASRNNFLMQFQADIL-GVPVERPV-VLETTALG 442 (499)
T ss_pred EeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEcCccccchhHHHHHHHHh-CCeeeccc-cchhhHHH
Confidence 3444432 3455666666666666666654432222 5889999999999999999999999 78888874 56789999
Q ss_pred HHHHHhhhcC
Q 006194 400 AAVQGGILSG 409 (657)
Q Consensus 400 Aa~~a~~~~~ 409 (657)
||+.|..-.+
T Consensus 443 aA~lAGla~G 452 (499)
T COG0554 443 AAYLAGLAVG 452 (499)
T ss_pred HHHHHhhhhC
Confidence 9999987665
No 104
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=92.00 E-value=0.82 Score=44.26 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhCCCCCcEEEEeCCCCCHH-HHHHHHHHHHHcCCceeeecchhHHHHHHhccccCCCcceEEEEEecCC
Q 006194 152 LQKMKETAEAYLGKKIKDAVVTVPAYFNDA-QRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEMNILVYDLGGG 230 (657)
Q Consensus 152 L~~l~~~a~~~~~~~~~~~vitVPa~~~~~-qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Ggg 230 (657)
.+++++.++..++.++ .++++-..|... ..+..++.|. | ...|.-.+... ...+..+++|+|+.
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ssEa~~~~~~vAA-a----------NW~Ata~~~~e--~~~dsci~VD~GST 140 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSSEALKNPREVAA-A----------NWVATARFLAE--EIKDSCILVDMGST 140 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcChhHhcCHHHHHH-h----------hhHHHHHHHHH--hcCCceEEEecCCc
Confidence 4567777777766554 788888777653 2221222110 0 01111111111 13567889999999
Q ss_pred eeEEEEEE
Q 006194 231 TFDVSILT 238 (657)
Q Consensus 231 t~dvsv~~ 238 (657)
|+|+.=+.
T Consensus 141 TtDIIPi~ 148 (330)
T COG1548 141 TTDIIPIK 148 (330)
T ss_pred ccceEeec
Confidence 99987664
No 105
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=91.84 E-value=10 Score=39.19 Aligned_cols=93 Identities=23% Similarity=0.329 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHh--CCCCCcEEEEeCCCCCHHH------------HHHHHHH-HHHcCCceeeecchhHHH
Q 006194 143 SPEEISAMILQKMKETAEAYL--GKKIKDAVVTVPAYFNDAQ------------RQATKDA-GIIAGLNVARIINEPTAA 207 (657)
Q Consensus 143 ~~~el~~~~L~~l~~~a~~~~--~~~~~~~vitVPa~~~~~q------------r~~l~~A-a~~AGl~~~~li~Ep~Aa 207 (657)
++++++..+.+.+.+..++.- ..++..+.|++|...+... .-.+.+. -+..|++ +.+.|+..|+
T Consensus 32 ~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~p-v~v~NDa~~~ 110 (318)
T TIGR00744 32 TPETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLP-VVVENDANAA 110 (318)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCC-EEEechHHHH
Confidence 566665555555555444321 1245567777876543211 1113322 2345776 5689999999
Q ss_pred HHHhccccCC-CcceEEEEEecCCeeEEEEE
Q 006194 208 AIAYGLDKKG-GEMNILVYDLGGGTFDVSIL 237 (657)
Q Consensus 208 al~y~~~~~~-~~~~vlv~D~Gggt~dvsv~ 237 (657)
|++-...... ..++++++.+|.|- -.+++
T Consensus 111 alaE~~~g~~~~~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 111 ALGEYKKGAGKGARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHHHHHhcccCCCCcEEEEEeCCcc-EEEEE
Confidence 8865443222 35678888898875 44444
No 106
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=91.76 E-value=2.7 Score=43.09 Aligned_cols=54 Identities=31% Similarity=0.481 Sum_probs=38.6
Q ss_pred CCcceEEEecCccCcHHHHHHHHhhcCCC---CCCCCCCc----hhhhHhHHHHHHhhhcCC
Q 006194 356 TDIREIVLVGGSTRIPKIQQLLKDFFDGK---EPSKGINP----DEAVAHGAAVQGGILSGE 410 (657)
Q Consensus 356 ~~i~~V~LvGG~sr~p~v~~~l~~~f~~~---~v~~~~~~----~~ava~GAa~~a~~~~~~ 410 (657)
.+++.|+|.|-.+++|-+.+.+++.|+.. ++.. +.+ -...|.|||+.|.-+.+.
T Consensus 259 ~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~-l~~~~~~aKeaA~GaAiIA~glaGG 319 (343)
T PF07318_consen 259 PDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRK-LEGLARKAKEAAQGAAIIANGLAGG 319 (343)
T ss_pred CCCCEEEEeccccccHHHHHHHHHHHHhhcccceee-cccccccchhhhhhHHHHhhhhhcc
Confidence 46789999999999999988887777221 2211 122 245899999999877654
No 107
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=90.67 E-value=1.8 Score=45.30 Aligned_cols=72 Identities=21% Similarity=0.272 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCC----CCCchhhhHhHHHHHHhhh
Q 006194 332 LNMDLFKKTMGPVKKALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSK----GINPDEAVAHGAAVQGGIL 407 (657)
Q Consensus 332 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~----~~~~~~ava~GAa~~a~~~ 407 (657)
++.-+.+-+...|.+.++... ...+.|+++||+++.|.+.+.|++.++ .++.. ..+++.-=|..-|++|...
T Consensus 264 ~~aTlt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~-~~v~~~~~~G~~~da~EA~aFA~La~~~ 339 (365)
T PRK09585 264 VQATLTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLP-TEVATTDALGIDGDAKEALAFAWLAVRT 339 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcC-CcccCHHHcCCChhHHHHHHHHHHHHHH
Confidence 333344444555666665432 224689999999999999999999995 44432 2456655566666776543
No 108
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=90.41 E-value=25 Score=36.65 Aligned_cols=184 Identities=16% Similarity=0.220 Sum_probs=91.2
Q ss_pred CCCcEEEEe-CCCCCHHHHH--HHHHHHHHcCCceeeecchhHHHHHHhccccC-CCcceEEEEEecCCeeEEEEEEEeC
Q 006194 166 KIKDAVVTV-PAYFNDAQRQ--ATKDAGIIAGLNVARIINEPTAAAIAYGLDKK-GGEMNILVYDLGGGTFDVSILTIDN 241 (657)
Q Consensus 166 ~~~~~vitV-Pa~~~~~qr~--~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~-~~~~~vlv~D~Gggt~dvsv~~~~~ 241 (657)
.+..+.+|. |..|+.-..- .-+--|...|.+.+ -++.-.|-+++-.+... ..+ +++=+=||+|.+.. ...
T Consensus 70 did~Iavt~GPGl~~~LrVG~~~Ak~LA~a~~~Pli-gV~HlegHi~a~~l~~~~~~P---l~LlVSGGhT~l~~--~~~ 143 (345)
T PTZ00340 70 DISLICYTKGPGMGAPLSVGAVVARTLSLLWGKPLV-GVNHCVAHIEMGRLVTGAENP---VVLYVSGGNTQVIA--YSE 143 (345)
T ss_pred HCCEEEEecCCCcHhhHHHHHHHHHHHHHHcCCCEe-ecchHHHHHHHHhhccCCCCC---eEEEEeCCceEEEE--ecC
Confidence 455667776 7766543322 12223344455543 34444444443322222 123 55566778888775 444
Q ss_pred CeEEEEEEeCCCCCccchhhHHHHHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHHHHHHccCCceeEEEEeeccCCcee
Q 006194 242 GVFEVLATSGDTHLGGEDFDHRVMDYFIKLIKKKYNKDI-SKDNKAIGKLRRECERAKRALSSQHQVRVEIESLFDGVDF 320 (657)
Q Consensus 242 ~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~-~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~l~~~~~~ 320 (657)
+.+++++..-|... |+.||+.= +..|... ...-....+|..... . .+.++....+.++
T Consensus 144 ~~~~ilG~T~Dda~-Gea~DKva---------r~LGL~~yp~gGp~iE~lA~~g~---~--------~~~~P~~~~~~df 202 (345)
T PTZ00340 144 HRYRIFGETIDIAV-GNCLDRFA---------RLLNLSNDPAPGYNIEQLAKKGK---N--------LIELPYVVKGMDM 202 (345)
T ss_pred CeEEEEEeecccch-hHHHHHHH---------HHhCCCCCCCChHHHHHHHhhCC---C--------ccCCCCCCCCCcE
Confidence 67899988876544 56666532 2223331 112233334422211 0 1111111122222
Q ss_pred EEE---------ecH----------------HHHHHHHHHH----HHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcH
Q 006194 321 SEP---------LTR----------------ARFEELNMDL----FKKTMGPVKKALEDAGLKKTDIREIVLVGGSTRIP 371 (657)
Q Consensus 321 ~~~---------itr----------------~~fe~~~~~~----~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p 371 (657)
+++ +.+ ....++|..+ ++-+.+.+.++++.. .++.++++||-+...
T Consensus 203 SFSGlkTav~~~i~~~~~~~~~~~~~~~~~~~~~~diaasfq~~v~~~L~~k~~~a~~~~-----~~~~lvv~GGVAaN~ 277 (345)
T PTZ00340 203 SFSGILTYIEDLVEHPQFKDVVSEIVPPEEEFFTDDLCFSLQETIFAMLVEVTERAMSHC-----GSNEVLIVGGVGCNL 277 (345)
T ss_pred ECccHHHHHHHHHHhccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCeEEEcCCHHHHH
Confidence 221 100 0122344433 333444455555543 367899999999999
Q ss_pred HHHHHHHhhc
Q 006194 372 KIQQLLKDFF 381 (657)
Q Consensus 372 ~v~~~l~~~f 381 (657)
++|+.|++.+
T Consensus 278 ~LR~~l~~~~ 287 (345)
T PTZ00340 278 RLQEMMQQMA 287 (345)
T ss_pred HHHHHHHHHH
Confidence 9999999987
No 109
>PRK14878 UGMP family protein; Provisional
Probab=90.32 E-value=9.3 Score=39.62 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=22.1
Q ss_pred cceEEEecCccCcHHHHHHHHhhc
Q 006194 358 IREIVLVGGSTRIPKIQQLLKDFF 381 (657)
Q Consensus 358 i~~V~LvGG~sr~p~v~~~l~~~f 381 (657)
+..|+|+||-+...++++.+.+.+
T Consensus 242 ~~~vvlsGGVa~N~~L~~~l~~~~ 265 (323)
T PRK14878 242 KKEVLLVGGVAANRRLREKLEIMA 265 (323)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHH
Confidence 678999999999999999999876
No 110
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=90.06 E-value=0.32 Score=51.78 Aligned_cols=49 Identities=16% Similarity=0.347 Sum_probs=41.7
Q ss_pred cceEEEecCccCcHHHHHHHHhhcC-------CCCCCCCCCchhhhHhHHHHHHhh
Q 006194 358 IREIVLVGGSTRIPKIQQLLKDFFD-------GKEPSKGINPDEAVAHGAAVQGGI 406 (657)
Q Consensus 358 i~~V~LvGG~sr~p~v~~~l~~~f~-------~~~v~~~~~~~~ava~GAa~~a~~ 406 (657)
++.|+|+||+|.+|.+...|++.+- ...|....||-..+=+||+.+|+.
T Consensus 559 V~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 559 VSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred hhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 7899999999999999999988762 234566779999999999999976
No 111
>PTZ00297 pantothenate kinase; Provisional
Probab=89.58 E-value=39 Score=42.44 Aligned_cols=50 Identities=16% Similarity=0.077 Sum_probs=36.8
Q ss_pred CCCcceEEEecCc-cCcHHHHHHHHhhc-----CCCCCCCCCCchhhhHhHHHHHH
Q 006194 355 KTDIREIVLVGGS-TRIPKIQQLLKDFF-----DGKEPSKGINPDEAVAHGAAVQG 404 (657)
Q Consensus 355 ~~~i~~V~LvGG~-sr~p~v~~~l~~~f-----~~~~v~~~~~~~~ava~GAa~~a 404 (657)
..+++.|+++|++ ...|..++.|...+ |+.+....-+....-|+||++..
T Consensus 1389 ~~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~ga~Ga~~~~ 1444 (1452)
T PTZ00297 1389 VQGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYLGALGCATLD 1444 (1452)
T ss_pred HcCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCccccHHhhhhhcC
Confidence 3568999999995 55899998887654 33444445567788899998864
No 112
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=89.12 E-value=8.6 Score=44.08 Aligned_cols=75 Identities=11% Similarity=0.050 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCc--HHHHH-HHHhhcCCC----------CCCCCCCchhhhH
Q 006194 331 ELNMDLFKKTMGPVKKALEDAGLKKTDIREIVLVGGSTRI--PKIQQ-LLKDFFDGK----------EPSKGINPDEAVA 397 (657)
Q Consensus 331 ~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~--p~v~~-~l~~~f~~~----------~v~~~~~~~~ava 397 (657)
..+...++.+...+-..+...-....+.+.|+|.||-+.- +++.+ .+.+.|..+ ++....+ +.+.-
T Consensus 243 ~~A~~~~~~~~~~lg~~~~nl~~~~~~p~~vvigGGIs~~~~~~l~~~~f~~~f~~kg~~~~~~~~ipv~~i~~-~~~~l 321 (638)
T PRK14101 243 ALALEAVECFCAILGTFAGNLALTLGALGGIYIGGGVVPKLGELFTRSSFRARFEAKGRFEAYLANIPTYLITA-EYPAF 321 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEeCcHHHHHHHHcChHHHHHHHHhCCChHHHHhcCCEEEEeC-CChhH
Confidence 3444566666666655555432222336789888888733 55553 566666222 2222223 34556
Q ss_pred hHHHHHHhh
Q 006194 398 HGAAVQGGI 406 (657)
Q Consensus 398 ~GAa~~a~~ 406 (657)
.||+.++..
T Consensus 322 ~Gaa~~~~~ 330 (638)
T PRK14101 322 LGVSAILAE 330 (638)
T ss_pred HHHHHHHHH
Confidence 788655543
No 113
>PTZ00288 glucokinase 1; Provisional
Probab=88.87 E-value=36 Score=36.39 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=18.1
Q ss_pred CeEEEEEcCccceEEEEEEC
Q 006194 32 GTVIGIDLGTTYSCVGVYRN 51 (657)
Q Consensus 32 ~~viGIDlGTt~s~va~~~~ 51 (657)
.+++|+|+|-||+++++++.
T Consensus 26 ~~~~~~DiGgt~~R~~~~~~ 45 (405)
T PTZ00288 26 PIFVGCDVGGTNARVGFARE 45 (405)
T ss_pred CeEEEEEecCCceEEEEEec
Confidence 47999999999999999964
No 114
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=88.03 E-value=1.4 Score=46.16 Aligned_cols=75 Identities=23% Similarity=0.239 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCC----CCCchhhhHhHHHHHHh
Q 006194 330 EELNMDLFKKTMGPVKKALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSK----GINPDEAVAHGAAVQGG 405 (657)
Q Consensus 330 e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~----~~~~~~ava~GAa~~a~ 405 (657)
++++.-+.+-+...|.+.++.... +++.|+++||+++.|.+.+.|++.+++.+|.. .++++.-=|.+-|++|.
T Consensus 260 ~D~~aTlt~~TA~sI~~~i~~~~~---~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aFA~La~ 336 (364)
T PF03702_consen 260 EDILATLTEFTAQSIADAIRRFPP---QPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAFAWLAY 336 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-T---T-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC---CCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHHHHHHH
Confidence 445555555556666666666532 37899999999999999999999996644432 23455444555566665
Q ss_pred hh
Q 006194 406 IL 407 (657)
Q Consensus 406 ~~ 407 (657)
..
T Consensus 337 ~~ 338 (364)
T PF03702_consen 337 RR 338 (364)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 115
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=87.81 E-value=0.92 Score=46.18 Aligned_cols=73 Identities=23% Similarity=0.394 Sum_probs=40.4
Q ss_pred HHHHHHHcCCceeeecchhHHHHHHh-ccccC-CCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHH
Q 006194 186 TKDAGIIAGLNVARIINEPTAAAIAY-GLDKK-GGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHR 263 (657)
Q Consensus 186 l~~Aa~~AGl~~~~li~Ep~Aaal~y-~~~~~-~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~ 263 (657)
+...-+..|+++ .+++..+-|.+.| +.... ......+++|+|||++.++.++- +.+ . .....++|.-.+.+.
T Consensus 77 ~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~--~~~--~-~~~Sl~lG~vrl~e~ 150 (285)
T PF02541_consen 77 LDRIKKETGIDI-EIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFEN--GKV--V-FSQSLPLGAVRLTER 150 (285)
T ss_dssp HHHHHHHHSS-E-EEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEET--TEE--E-EEEEES--HHHHHHH
T ss_pred HHHHHHHhCCce-EEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEEC--Cee--e-EeeeeehHHHHHHHH
Confidence 344445679886 5566555554444 22221 13567899999999999998863 222 1 122256777766554
Q ss_pred H
Q 006194 264 V 264 (657)
Q Consensus 264 l 264 (657)
+
T Consensus 151 ~ 151 (285)
T PF02541_consen 151 F 151 (285)
T ss_dssp H
T ss_pred H
Confidence 3
No 116
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=87.52 E-value=36 Score=34.78 Aligned_cols=69 Identities=19% Similarity=0.153 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCC--------CCCCCCCCchhhhHhHHHHHH
Q 006194 335 DLFKKTMGPVKKALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDG--------KEPSKGINPDEAVAHGAAVQG 404 (657)
Q Consensus 335 ~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~--------~~v~~~~~~~~ava~GAa~~a 404 (657)
.++++....+-..+...- ..-+++.|+|-||.+..+.+.+.+++.+.. .++....-.+.+.++|||..+
T Consensus 224 ~~~~~~~~~la~~l~n~~-~~ldP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 224 AHVERYLDLLAICLGNIL-TIVDPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 344444444444443221 113467888877777666666666665521 112223344678899999876
No 117
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=86.17 E-value=62 Score=36.18 Aligned_cols=52 Identities=19% Similarity=0.206 Sum_probs=37.5
Q ss_pred cceEEEecCccCcHHHHHHHHhhcC--CCCCCCCC---CchhhhHhHHHHHHhhhcC
Q 006194 358 IREIVLVGGSTRIPKIQQLLKDFFD--GKEPSKGI---NPDEAVAHGAAVQGGILSG 409 (657)
Q Consensus 358 i~~V~LvGG~sr~p~v~~~l~~~f~--~~~v~~~~---~~~~ava~GAa~~a~~~~~ 409 (657)
++.|+|+||-+...++++.|.+.+. +.++..+. ..|.+++.|++.+....++
T Consensus 246 ~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~g 302 (535)
T PRK09605 246 KDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKAG 302 (535)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHcC
Confidence 5789999999999999999996651 22333332 4578999998876554443
No 118
>PLN02666 5-oxoprolinase
Probab=85.08 E-value=10 Score=46.48 Aligned_cols=78 Identities=12% Similarity=0.092 Sum_probs=47.5
Q ss_pred ecHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHH
Q 006194 324 LTRARFEELNMDLF-KKTMGPVKKALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAV 402 (657)
Q Consensus 324 itr~~fe~~~~~~~-~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~ 402 (657)
++-++...-+..+. +.+...|+.....-|.++.+ -.++..||+ =|...-.|.+.++-+++..+.+|.-..|+|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~-~~l~afGGa--gp~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETAN-HALACFGGA--GPQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-ceEEEecCc--HHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 34444443333333 33445555555565665543 233444444 478888899999444588888999999999986
Q ss_pred HH
Q 006194 403 QG 404 (657)
Q Consensus 403 ~a 404 (657)
.-
T Consensus 531 ad 532 (1275)
T PLN02666 531 AD 532 (1275)
T ss_pred hh
Confidence 43
No 119
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=84.44 E-value=5.5 Score=40.00 Aligned_cols=50 Identities=20% Similarity=0.247 Sum_probs=40.0
Q ss_pred cceEEEecC--ccCcH-HHHHHHHhhcCCCCCCCCCCchhhhHhHHHHHHhhhcCC
Q 006194 358 IREIVLVGG--STRIP-KIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQGGILSGE 410 (657)
Q Consensus 358 i~~V~LvGG--~sr~p-~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~a~~~~~~ 410 (657)
...|+|.|- +++.| .+++.|++.| ..++.. +.. ...|.|+|+.|.-+.+.
T Consensus 263 ~~~IvLSGs~g~~r~~~~v~~~I~~~L-~~~V~~-L~~-ksAA~G~AiIA~dI~gG 315 (326)
T TIGR03281 263 EAGVVLAGSGGTLREPINFSGKIKRVL-SCKVLV-LDS-ESAAIGLALIAEDIFSG 315 (326)
T ss_pred CCcEEEeCcchhccCchHHHHHHHHHh-CCCeEE-ecc-hhhhhhHHHHHHHHhCC
Confidence 348999987 99999 9999999999 455443 233 78899999999877655
No 120
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=84.41 E-value=0.87 Score=46.42 Aligned_cols=68 Identities=19% Similarity=0.123 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHH
Q 006194 333 NMDLFKKTMGPVKKALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQ 403 (657)
Q Consensus 333 ~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~ 403 (657)
++-..+.+.+.|++.....+..+.+ -.++.+||.+ |.+...+.+.++-..+..+..+.-+.|.||++-
T Consensus 217 ~~~~~~~m~~~i~~~~~~~g~~~~~-~~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~a 284 (290)
T PF01968_consen 217 VRIANENMADAIREVSVERGYDPRD-FPLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAVA 284 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--EEE-E--------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhCCCccc-cccccccccc--ccccccccccccccccccccccccccccccccc
Confidence 3334444455555554444544332 2344456654 788888888885456666666788999999863
No 121
>PLN02920 pantothenate kinase 1
Probab=83.95 E-value=6 Score=41.47 Aligned_cols=49 Identities=12% Similarity=-0.108 Sum_probs=36.7
Q ss_pred CCcceEEEecCccCcH-HHHHHHHhhc-----CCCCCCCCCCchhhhHhHHHHHH
Q 006194 356 TDIREIVLVGGSTRIP-KIQQLLKDFF-----DGKEPSKGINPDEAVAHGAAVQG 404 (657)
Q Consensus 356 ~~i~~V~LvGG~sr~p-~v~~~l~~~f-----~~~~v~~~~~~~~ava~GAa~~a 404 (657)
..++.|+++|...|.+ ..++.|.-.+ ++.+.....+.....|+||.+..
T Consensus 296 ~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~ 350 (398)
T PLN02920 296 FGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSY 350 (398)
T ss_pred cCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhc
Confidence 5689999999999998 7777554332 34455666688889999998765
No 122
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=83.52 E-value=75 Score=34.89 Aligned_cols=83 Identities=17% Similarity=0.087 Sum_probs=56.3
Q ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHH-HHHHhhcCCCCCCC-CCCchhhhHhH
Q 006194 322 EPLTRARFEELNMDLFKKTMGPVKKALEDAGLKKTDIREIVLVGGSTRIPKIQ-QLLKDFFDGKEPSK-GINPDEAVAHG 399 (657)
Q Consensus 322 ~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~-~~l~~~f~~~~v~~-~~~~~~ava~G 399 (657)
.+..-.++...++..+++++-.+.+-+.+... .+.+.+.||.+..-.+- +.+.+-+ ...+.. +.-.|.-.|.|
T Consensus 254 ~~~~~~diAasaQ~~lE~l~l~~~~~~~~~~g----~~~L~~AGGVAlNv~~N~~~l~~~~-f~dlfV~Pa~gD~G~AvG 328 (555)
T COG2192 254 STERAADIAASAQAYLEELVLEMLRYLREETG----EDNLALAGGVALNVKANGKLLRRGL-FEDLFVQPAMGDAGLAVG 328 (555)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhC----ccceEEccceeeeeeehHhHhhccc-CceeEecCCCCCcchHHH
Confidence 34445566677777888777776666665321 56799999998876666 5666555 445443 33457889999
Q ss_pred HHHHHhhhcC
Q 006194 400 AAVQGGILSG 409 (657)
Q Consensus 400 Aa~~a~~~~~ 409 (657)
||+++....+
T Consensus 329 AAl~~~~~~~ 338 (555)
T COG2192 329 AALAVKRELG 338 (555)
T ss_pred HHHHHHHHhc
Confidence 9999976554
No 123
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=83.45 E-value=64 Score=34.00 Aligned_cols=83 Identities=20% Similarity=0.139 Sum_probs=56.4
Q ss_pred EEecHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCcce-EEEecCccCcHHHHHHHHhhcCCCCCCC-CCCchhhhHh
Q 006194 322 EPLTRARFEELNMDLFKKTM-GPVKKALEDAGLKKTDIRE-IVLVGGSTRIPKIQQLLKDFFDGKEPSK-GINPDEAVAH 398 (657)
Q Consensus 322 ~~itr~~fe~~~~~~~~~~~-~~i~~~l~~~~~~~~~i~~-V~LvGG~sr~p~v~~~l~~~f~~~~v~~-~~~~~~ava~ 398 (657)
..-.+.++-..++..+++++ ..++.++++.+ ++. +.|.||.+..-..-..|.+..+-.++.. +.-.|.-+|+
T Consensus 131 ~~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~ai 205 (360)
T PF02543_consen 131 LTQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAI 205 (360)
T ss_dssp EESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHH
Confidence 44567788877888887765 45566666665 345 9999999988888888888743334433 3455899999
Q ss_pred HHHHHHhhhcC
Q 006194 399 GAAVQGGILSG 409 (657)
Q Consensus 399 GAa~~a~~~~~ 409 (657)
|||+++....+
T Consensus 206 GaA~~~~~~~~ 216 (360)
T PF02543_consen 206 GAALYAWHELG 216 (360)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 99999985543
No 124
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=82.79 E-value=3.1 Score=43.38 Aligned_cols=160 Identities=24% Similarity=0.304 Sum_probs=79.6
Q ss_pred CCCCCCeEEEEEcCccceEEEEEE--C---CeEEEEecCCCCcccceEEEEcCCceeEcHHHHHHHhhcccchhhHhHHh
Q 006194 27 DATKLGTVIGIDLGTTYSCVGVYR--N---GRVEIIANDQGNRITPSWVAFTDTERLIGEAAKNQAALNAERTVFDVKRL 101 (657)
Q Consensus 27 ~~~~~~~viGIDlGTt~s~va~~~--~---g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~~ 101 (657)
....+.+++-||=|+|-|+|=+++ . +.+-.+..+.=....|=.-+|.+ +|......+..+
T Consensus 62 s~~~~~Y~iiiDAGSTGsRvHvY~F~~~~~~~~p~le~E~F~~~kPGLSsfad---------------dp~~aA~Sl~~L 126 (453)
T KOG1385|consen 62 SSIKRQYAIIIDAGSTGTRVHVYKFDQCLPGMPPELEHELFKEVKPGLSSFAD---------------DPEEAANSLRPL 126 (453)
T ss_pred CCCceEEEEEEecCCCcceEEEEEeccCCCCCCchhHHHHHhhcCCcccccCC---------------ChHHHHHhHHHH
Confidence 333456899999999999999884 2 22211111111122243334433 344444455555
Q ss_pred hCCCCCCHHHH-hhhccCCeEEeecCCceeEEEEEcCceeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCH
Q 006194 102 IGRKFDDPEVQ-RDIKFLPYKIVNKGGKPYIQVKVKGETKVFSPEEISAMILQKMKETAEAYLGKKIKDAVVTVPAYFND 180 (657)
Q Consensus 102 lg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~ 180 (657)
|...... +. ...+.-|..+. ...| ....|.+-+..+|+.++++.+....-.+..-.++|=.
T Consensus 127 Ld~A~~~--vP~~~~~kTPi~lk----------ATAG--LRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsIm~---- 188 (453)
T KOG1385|consen 127 LDVAEAF--VPREHWKKTPIVLK----------ATAG--LRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSIMD---- 188 (453)
T ss_pred HHHHHhh--CCHhHhccCceEEE----------eecc--cccCChhHHHHHHHHHHHHHhccCCccccCCceeecc----
Confidence 5432111 11 11111221111 1134 5677888899999999998874322222211122211
Q ss_pred HHHHHHHHHHHHcCCceeeecchhHHH--HHHhccccCC--CcceEEEEEecCCeeEEEEEE
Q 006194 181 AQRQATKDAGIIAGLNVARIINEPTAA--AIAYGLDKKG--GEMNILVYDLGGGTFDVSILT 238 (657)
Q Consensus 181 ~qr~~l~~Aa~~AGl~~~~li~Ep~Aa--al~y~~~~~~--~~~~vlv~D~Gggt~dvsv~~ 238 (657)
=.+|..-| .+.|.+..-. ....+.++|+|||++.++..-
T Consensus 189 -------------------GtdEGv~aWiTiN~Llg~L~~~~~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 189 -------------------GTDEGVYAWITINYLLGTLGAPGHRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred -------------------CcccceeeeeehhhhhcccCCCCCCceEEEEcCCceEEEEEec
Confidence 01111111 1233332222 246799999999999999765
No 125
>PRK00292 glk glucokinase; Provisional
Probab=82.10 E-value=4.5 Score=41.80 Aligned_cols=42 Identities=31% Similarity=0.200 Sum_probs=28.4
Q ss_pred HHcCCceeeecchhHHHHHHhccc--------cCCC---cceEEEEEecCCee
Q 006194 191 IIAGLNVARIINEPTAAAIAYGLD--------KKGG---EMNILVYDLGGGTF 232 (657)
Q Consensus 191 ~~AGl~~~~li~Ep~Aaal~y~~~--------~~~~---~~~vlv~D~Gggt~ 232 (657)
+..|++.+.+.|+-.|+|++-... .... ..+++++-+|.|-=
T Consensus 88 ~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTGiG 140 (316)
T PRK00292 88 QELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTGLG 140 (316)
T ss_pred HHhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCcce
Confidence 346887688999999999985431 1111 35688888886643
No 126
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=81.56 E-value=12 Score=38.81 Aligned_cols=53 Identities=26% Similarity=0.367 Sum_probs=42.2
Q ss_pred CCCcceEEEecCccCcHHHHHHHHhhcCCCCCC----CCCCchhhhHhHHHHHHhhh
Q 006194 355 KTDIREIVLVGGSTRIPKIQQLLKDFFDGKEPS----KGINPDEAVAHGAAVQGGIL 407 (657)
Q Consensus 355 ~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~v~----~~~~~~~ava~GAa~~a~~~ 407 (657)
..+.+..+++||+.+.|.+.+.|...+++..|. ..++++..=|.+=|+.|...
T Consensus 288 ~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~ 344 (371)
T COG2377 288 QGDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRT 344 (371)
T ss_pred cCCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHH
Confidence 456789999999999999999999999765554 24577777777777777654
No 127
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=79.74 E-value=1.7 Score=43.14 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=17.1
Q ss_pred eEEEEEcCccceEEEEEEC
Q 006194 33 TVIGIDLGTTYSCVGVYRN 51 (657)
Q Consensus 33 ~viGIDlGTt~s~va~~~~ 51 (657)
+++|||+|||++++++++.
T Consensus 1 y~lgiDiGTts~K~~l~d~ 19 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDE 19 (245)
T ss_dssp EEEEEEECSSEEEEEEEET
T ss_pred CEEEEEEcccceEEEEEeC
Confidence 4799999999999999973
No 128
>PRK00976 hypothetical protein; Provisional
Probab=77.99 E-value=17 Score=37.36 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=38.6
Q ss_pred CcceEEEecCccCcH--HHHHHHHhhcCCCCCCCCCCchhhhHhHHHHHHhhhcCC
Q 006194 357 DIREIVLVGGSTRIP--KIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQGGILSGE 410 (657)
Q Consensus 357 ~i~~V~LvGG~sr~p--~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~a~~~~~~ 410 (657)
+++.|+|-||-++.+ .+.+.+++.+ ...+ ..-...+.++|||+.|....+.
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l-~~~~--a~LG~dAGaiGAA~iA~~i~~G 315 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELL-DKKV--LVLGKESAAIGLALIARDIFNG 315 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHh-cccc--cccCCchHHHHHHHHHHHHhCC
Confidence 478899999999998 7888888887 3332 2234589999999998776543
No 129
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=77.79 E-value=18 Score=37.18 Aligned_cols=38 Identities=32% Similarity=0.379 Sum_probs=26.3
Q ss_pred HcCCceeeecchhHHHHHHhccccCC-CcceEEEEEecCC
Q 006194 192 IAGLNVARIINEPTAAAIAYGLDKKG-GEMNILVYDLGGG 230 (657)
Q Consensus 192 ~AGl~~~~li~Ep~Aaal~y~~~~~~-~~~~vlv~D~Ggg 230 (657)
..|++ +.+-++..|+|++-.+.... ...+++++-+|-|
T Consensus 105 ~~~~P-v~veNDan~aalaE~~~g~~~~~~~~~~i~~gtG 143 (314)
T COG1940 105 RLGLP-VFVENDANAAALAEAWFGAGRGIDDVVYITLGTG 143 (314)
T ss_pred HHCCC-EEEecHHHHHHHHHHHhCCCCCCCCEEEEEEccc
Confidence 34555 57899999999987665442 3456777777766
No 130
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=77.53 E-value=20 Score=34.28 Aligned_cols=65 Identities=15% Similarity=0.334 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCC--CCCCCCCchhhhHhHHHH
Q 006194 332 LNMDLFKKTMGPVKKALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGK--EPSKGINPDEAVAHGAAV 402 (657)
Q Consensus 332 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~--~v~~~~~~~~ava~GAa~ 402 (657)
+-+.+|.-+++..++++..++- +.|++|||-...-.+|++.......+ ++.. .|-..++--|+-+
T Consensus 234 LQEtvFamLVEiTERAMAh~~s-----~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~fa-TDeRfCIDNG~MI 300 (336)
T KOG2708|consen 234 LQETVFAMLVEITERAMAHCGS-----KEVLIVGGVGCNERLQEMMAIMCSERGGKLFA-TDERFCIDNGVMI 300 (336)
T ss_pred HHHHHHHHHHHHHHHHHhhcCC-----CcEEEEecccccHHHHHHHHHHHHhcCCceEe-cccceeeeCchHH
Confidence 3334555556666777776543 57999999999999999998887322 2222 2334455555543
No 131
>PTZ00107 hexokinase; Provisional
Probab=77.23 E-value=42 Score=36.59 Aligned_cols=62 Identities=13% Similarity=0.066 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCc--eeeecchhHHHHHHhccccCC-CcceEEEEEecCCeeEEEE
Q 006194 175 PAYFNDAQRQATKDAGIIAGLN--VARIINEPTAAAIAYGLDKKG-GEMNILVYDLGGGTFDVSI 236 (657)
Q Consensus 175 Pa~~~~~qr~~l~~Aa~~AGl~--~~~li~Ep~Aaal~y~~~~~~-~~~~vlv~D~Gggt~dvsv 236 (657)
|..-...-.+.+.+|...-|++ ++.++|+.+|.-++.++.... .+...+-+=+|-||=-+.+
T Consensus 189 ~~v~G~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~~~~~~~~~iGlIlGTG~NacY~ 253 (464)
T PTZ00107 189 DPVEGKDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQKPKNTPPCQVGVIIGTGSNACYF 253 (464)
T ss_pred CCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcCcCCCCCceEEEEEeccccceee
Confidence 4444556788899999888875 577899999987776665421 1234444445666543333
No 132
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=75.78 E-value=19 Score=38.13 Aligned_cols=25 Identities=40% Similarity=0.605 Sum_probs=20.3
Q ss_pred CeEEEEEcCccceEEEEEE---CCeEEE
Q 006194 32 GTVIGIDLGTTYSCVGVYR---NGRVEI 56 (657)
Q Consensus 32 ~~viGIDlGTt~s~va~~~---~g~~~i 56 (657)
+.++.||||.||.+++++. +|++++
T Consensus 75 g~~LaiD~GGTnlRvc~V~l~g~gt~~~ 102 (466)
T COG5026 75 GSVLAIDLGGTNLRVCLVVLGGDGTFDI 102 (466)
T ss_pred CCEEEEecCCceEEEEEEEeCCCCCccc
Confidence 6899999999999999884 445544
No 133
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=75.61 E-value=2.2 Score=47.52 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=18.6
Q ss_pred CCeEEEEEcCccceEEEEEEC
Q 006194 31 LGTVIGIDLGTTYSCVGVYRN 51 (657)
Q Consensus 31 ~~~viGIDlGTt~s~va~~~~ 51 (657)
|.+++|||+|||++++++++.
T Consensus 2 m~~~lgID~GTts~Ka~l~d~ 22 (520)
T PRK10939 2 MSYLMALDAGTGSIRAVIFDL 22 (520)
T ss_pred CcEEEEEecCCCceEEEEECC
Confidence 458999999999999999963
No 134
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=74.89 E-value=3.4 Score=47.04 Aligned_cols=41 Identities=24% Similarity=0.434 Sum_probs=29.7
Q ss_pred eeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEE
Q 006194 198 ARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILT 238 (657)
Q Consensus 198 ~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~ 238 (657)
..+.+-|.|..+...........+++++||||.|+|++++.
T Consensus 256 ~tI~SGPAagvvGAa~ltg~~~g~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 256 ETILSGPAAGVVGAAYLTGLKAGNAIVFDMGGTSTDVALII 296 (674)
T ss_pred eeEeeccHHHHHHHHHhcccccCCEEEEEcCCcceeeeeee
Confidence 44677788877766555222112699999999999999987
No 135
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=74.89 E-value=1.1e+02 Score=31.69 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=30.0
Q ss_pred cceEEEecCccCcHHHHHHHHhhcC--CCCCCCCC---CchhhhHhH
Q 006194 358 IREIVLVGGSTRIPKIQQLLKDFFD--GKEPSKGI---NPDEAVAHG 399 (657)
Q Consensus 358 i~~V~LvGG~sr~p~v~~~l~~~f~--~~~v~~~~---~~~~ava~G 399 (657)
+..|+|+||-+....+++.|.+.+. +.++..+. -.|.+++.|
T Consensus 243 ~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 243 KKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIA 289 (322)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHH
Confidence 5789999999999999999998652 22333222 236677777
No 136
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=74.45 E-value=24 Score=34.72 Aligned_cols=71 Identities=21% Similarity=0.317 Sum_probs=45.1
Q ss_pred CCCCCcEEE--EeCCCCCHHHHHHHHHHHHHcCCceeeecchhHHHHHHhccccCC-CcceEEEEEecCCeeEEEEE
Q 006194 164 GKKIKDAVV--TVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKG-GEMNILVYDLGGGTFDVSIL 237 (657)
Q Consensus 164 ~~~~~~~vi--tVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~-~~~~vlv~D~Gggt~dvsv~ 237 (657)
+..+..++. .+|.+|| --+++++.+.-.|.+. -+++-..||.+....+... ....++++|+|=|+|-.+++
T Consensus 111 g~~~~~~~y~~~~P~~~T--Rm~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v 184 (254)
T PF08735_consen 111 GGRPESFVYADDPPPYFT--RMRAVRESLGGAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALV 184 (254)
T ss_pred CCCHHHeeecCCCcHHHH--HHHHHHHHhccCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEE
Confidence 455667777 7888865 3345556655555555 3444444444444333321 35679999999999988887
No 137
>PLN02362 hexokinase
Probab=74.04 E-value=18 Score=39.74 Aligned_cols=54 Identities=17% Similarity=0.134 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHcCC--ceeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEE
Q 006194 179 NDAQRQATKDAGIIAGL--NVARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVS 235 (657)
Q Consensus 179 ~~~qr~~l~~Aa~~AGl--~~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvs 235 (657)
...-.+.+.+|...-|+ ++..++|+.++.-++.++.. +...+-+=+|.||=-+.
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY~~---~~~~iG~IlGTGtNacY 259 (509)
T PLN02362 204 GKDVAECLQGALNRRGLDMRVAALVNDTVGTLALGHYHD---PDTVAAVIIGTGTNACY 259 (509)
T ss_pred CchHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhcCC---CCceEEEEEECCccceE
Confidence 33455666666666665 45778999999877655443 23444445676654343
No 138
>PLN02405 hexokinase
Probab=73.76 E-value=17 Score=39.91 Aligned_cols=57 Identities=16% Similarity=0.094 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHHHcCCc--eeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEE
Q 006194 179 NDAQRQATKDAGIIAGLN--VARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILT 238 (657)
Q Consensus 179 ~~~qr~~l~~Aa~~AGl~--~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~ 238 (657)
...-.+.+.+|.+.-|++ +..++|+.++.-++.++... ...+-+=+|-||=-+.+-+
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~~~---~~~iG~IlGTGtNacY~E~ 262 (497)
T PLN02405 204 GQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYYNP---DVVAAVILGTGTNAAYVER 262 (497)
T ss_pred CchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcCCC---CceEEEEEeCCeeeEEEee
Confidence 444566777777777774 56789999998776655432 3444455677764444433
No 139
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=73.54 E-value=3 Score=34.53 Aligned_cols=18 Identities=33% Similarity=0.416 Sum_probs=16.4
Q ss_pred eEEEEEcCccceEEEEEE
Q 006194 33 TVIGIDLGTTYSCVGVYR 50 (657)
Q Consensus 33 ~viGIDlGTt~s~va~~~ 50 (657)
.++|||+|.|++++|+.+
T Consensus 2 ~ilgiD~Ggt~i~~a~~d 19 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVD 19 (99)
T ss_pred cEEEEccCCCeEEEEEEC
Confidence 379999999999999985
No 140
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=73.03 E-value=49 Score=33.96 Aligned_cols=36 Identities=31% Similarity=0.601 Sum_probs=27.5
Q ss_pred HHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhc
Q 006194 341 MGPVKKALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFF 381 (657)
Q Consensus 341 ~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f 381 (657)
.+.++++++.. .++.|+|.||-+....+++.|.+.+
T Consensus 247 ~~~~~~~~~~~-----g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 247 IEKTKRALKDT-----GPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred HHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHHHH
Confidence 34444454442 4678999999999999999998877
No 141
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=71.93 E-value=1.3e+02 Score=31.11 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=33.0
Q ss_pred CcceEEEecCccCcHHHHHHHHhhcCC--CCCCCCC---CchhhhHhHHHH
Q 006194 357 DIREIVLVGGSTRIPKIQQLLKDFFDG--KEPSKGI---NPDEAVAHGAAV 402 (657)
Q Consensus 357 ~i~~V~LvGG~sr~p~v~~~l~~~f~~--~~v~~~~---~~~~ava~GAa~ 402 (657)
.++.|+|.||.+...++++.|.+.+.. .++..+. --|.+++.|+|=
T Consensus 259 ~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~ag 309 (314)
T TIGR03723 259 GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAAG 309 (314)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHHH
Confidence 467899999999999999999988722 1232221 347788888763
No 142
>PRK07058 acetate kinase; Provisional
Probab=70.63 E-value=24 Score=37.29 Aligned_cols=44 Identities=11% Similarity=0.188 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCcc-CcHHHHHHHHhhc
Q 006194 334 MDLFKKTMGPVKKALEDAGLKKTDIREIVLVGGST-RIPKIQQLLKDFF 381 (657)
Q Consensus 334 ~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s-r~p~v~~~l~~~f 381 (657)
+-.+.++.+.|-...... ..+|.|+++||-+ ..+.+++.+.+.+
T Consensus 299 d~f~yri~k~IGa~~a~L----g~vDaiVfTGGIgEns~~vr~~i~~~l 343 (396)
T PRK07058 299 DLFALRIAGEIARLAATL----GGLDAVVFTAGIGEHQPAIRAAVCERL 343 (396)
T ss_pred HHHHHHHHHHHHHHHHHh----CCCCEEEECCccccCcHHHHHHHHhhh
Confidence 334445555554444433 3589999999999 9999999999877
No 143
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=69.30 E-value=9.6 Score=43.94 Aligned_cols=49 Identities=22% Similarity=0.266 Sum_probs=37.7
Q ss_pred CcceEEEecCccCcHHHHHHHHhhcC--CCCCCCC---CCchhhhHhHHHHHHh
Q 006194 357 DIREIVLVGGSTRIPKIQQLLKDFFD--GKEPSKG---INPDEAVAHGAAVQGG 405 (657)
Q Consensus 357 ~i~~V~LvGG~sr~p~v~~~l~~~f~--~~~v~~~---~~~~~ava~GAa~~a~ 405 (657)
.++.|+|+||.++...+++.+.+.+. +.++..+ .--|.+++.|.|++|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998773 2333332 2348899999998874
No 144
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=68.85 E-value=12 Score=36.68 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=12.6
Q ss_pred HHHHHhhhchHHHHHHHHHH-HHhh
Q 006194 559 VRERVDSRNKLETYIYNMRS-TIND 582 (657)
Q Consensus 559 ~~~~~ea~N~LE~~iy~~r~-~l~~ 582 (657)
.+.+.--..+|.+-+++||. +|++
T Consensus 84 l~dRetEI~eLksQL~RMrEDWIEE 108 (305)
T PF15290_consen 84 LHDRETEIDELKSQLARMREDWIEE 108 (305)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444556666677754 4444
No 145
>PRK09604 UGMP family protein; Validated
Probab=68.41 E-value=1.5e+02 Score=30.73 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=37.2
Q ss_pred CcceEEEecCccCcHHHHHHHHhhcC--CCCCCCCC---CchhhhHhHHHHHHhhhc
Q 006194 357 DIREIVLVGGSTRIPKIQQLLKDFFD--GKEPSKGI---NPDEAVAHGAAVQGGILS 408 (657)
Q Consensus 357 ~i~~V~LvGG~sr~p~v~~~l~~~f~--~~~v~~~~---~~~~ava~GAa~~a~~~~ 408 (657)
.++.|+|.||.+...++++.|.+.+. +.++..+. -.|.+++.|+|=+-....
T Consensus 254 ~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~~~~ 310 (332)
T PRK09604 254 GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYERLKA 310 (332)
T ss_pred CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHHHHc
Confidence 46789999999999999999998873 22333322 347888999885444333
No 146
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=68.05 E-value=78 Score=31.74 Aligned_cols=97 Identities=10% Similarity=0.170 Sum_probs=53.5
Q ss_pred HhhHHHHHHHhhhchHHHHHHHHHHHHhhhh---hcCCCHHHHHHHHHHHHHH---HHHHhcCCCCCHHHHHHHHHHHHH
Q 006194 554 EEDKKVRERVDSRNKLETYIYNMRSTINDKL---ADKIDSDDKERIESTLKEA---LEWLDDNQNAEKDDFDEKMKEVEA 627 (657)
Q Consensus 554 ~~D~~~~~~~ea~N~LE~~iy~~r~~l~~~~---~~~~~~~e~~~i~~~l~~~---~~WL~~~~~a~~~~~~~kl~~L~~ 627 (657)
..+.-...+....+.|+.-+..+........ ..|+ +-|.++...++.. .+-|+-.-..-+.+|..-+..|+.
T Consensus 145 ~aE~~Has~a~~~l~l~~~~R~~ek~n~~AIkKSrpYf--E~k~~~t~~le~qk~tv~~Leaev~~~K~~Y~~slrnLE~ 222 (426)
T KOG2008|consen 145 RAELVHASTAARYLALMGRMRQLEKKNKRAIKKSRPYF--ELKAKYTVQLEQQKKTVDDLEAEVTLAKGEYKMSLRNLEM 222 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 3334444455555666555444433222111 1111 2334444444433 333333212246689999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCC
Q 006194 628 VCNPVIKQVYEKNGGSSSADSEDEE 652 (657)
Q Consensus 628 ~~~~i~~r~~e~~~~~~~~~~~~~~ 652 (657)
+.+.|..+....+.-++++|+++.+
T Consensus 223 ISd~IHeeRssqs~~apssd~e~~~ 247 (426)
T KOG2008|consen 223 ISDEIHEERSSQSAMAPSSDGEGAE 247 (426)
T ss_pred HHHHHHHhhhhhhccCCCccccccc
Confidence 9999998887777777777766543
No 147
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=67.90 E-value=6.4 Score=43.02 Aligned_cols=16 Identities=25% Similarity=0.411 Sum_probs=14.4
Q ss_pred EEEEcCccceEEEEEE
Q 006194 35 IGIDLGTTYSCVGVYR 50 (657)
Q Consensus 35 iGIDlGTt~s~va~~~ 50 (657)
+|||+|||+++++++.
T Consensus 1 ~aiD~Gtt~~k~~l~~ 16 (454)
T TIGR02627 1 VAVDLGASSGRVMLAS 16 (454)
T ss_pred CcEeccCCchheEEEE
Confidence 5899999999999985
No 148
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=67.47 E-value=6.1 Score=35.10 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=18.7
Q ss_pred eEEEEEcCccceEEEEEECCe
Q 006194 33 TVIGIDLGTTYSCVGVYRNGR 53 (657)
Q Consensus 33 ~viGIDlGTt~s~va~~~~g~ 53 (657)
.++|||+|+..+.+|+.++..
T Consensus 2 riL~lD~G~kriGiAvsd~~~ 22 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDPLG 22 (135)
T ss_dssp EEEEEEECSSEEEEEEEETTT
T ss_pred eEEEEEeCCCeEEEEEecCCC
Confidence 589999999999999998663
No 149
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=67.09 E-value=20 Score=26.69 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=27.2
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q 006194 169 DAVVTVPAYFNDAQRQATKDAGIIAGLNVA 198 (657)
Q Consensus 169 ~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~ 198 (657)
...++.|+.++..+|..+.+.|...||...
T Consensus 16 ~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s~ 45 (59)
T cd06007 16 NEEYEFPSSLTNHERAVIHRLCRKLGLKSK 45 (59)
T ss_pred ccEEEcCCCCCHHHHHHHHHHHHHcCCCce
Confidence 677899999999999999999999999753
No 150
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=67.08 E-value=9.6 Score=32.99 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=17.5
Q ss_pred EEEEEcCccceEEEEEECCeE
Q 006194 34 VIGIDLGTTYSCVGVYRNGRV 54 (657)
Q Consensus 34 viGIDlGTt~s~va~~~~g~~ 54 (657)
+++||+|++.+.+++++.+..
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~ 21 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSD 21 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEE
T ss_pred CEEEEcCCCcEEEEEEEeCCC
Confidence 589999999999999987753
No 151
>PLN02596 hexokinase-like
Probab=65.21 E-value=1.1e+02 Score=33.62 Aligned_cols=58 Identities=17% Similarity=0.109 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHcCCc--eeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEE
Q 006194 179 NDAQRQATKDAGIIAGLN--VARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTI 239 (657)
Q Consensus 179 ~~~qr~~l~~Aa~~AGl~--~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~ 239 (657)
...-.+.+.+|...-|++ ++.++|+.++.-++.++... ...+-+=+|.||=-+.+-++
T Consensus 204 G~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY~~~---~~~iG~I~GTGtNacY~E~~ 263 (490)
T PLN02596 204 GKALVNDINRALEKHGLKIRVFALVDDTIGNLAGGRYYNK---DTVAAVTLGMGTNAAYVEPA 263 (490)
T ss_pred CcHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhhcCCC---CeEEEEEEecccceEEEEEc
Confidence 355567778888877874 56789999998777665542 34444447777654444443
No 152
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=65.08 E-value=97 Score=33.07 Aligned_cols=44 Identities=7% Similarity=0.051 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcceEEEecCcc-CcHHHHHHHHhhc
Q 006194 335 DLFKKTMGPVKKALEDAGLKKTDIREIVLVGGST-RIPKIQQLLKDFF 381 (657)
Q Consensus 335 ~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s-r~p~v~~~l~~~f 381 (657)
-.+.++.+.|-...... ...+|.|+++||-+ ..+.+++.|.+.+
T Consensus 304 ~f~yri~k~Iga~~a~L---~g~vDaiVfTGGIgE~s~~lr~~I~~~l 348 (402)
T PRK00180 304 VFVYRLAKYIGSYAAAL---NGRLDAIVFTAGIGENSALVREKVLEGL 348 (402)
T ss_pred HHHHHHHHHHHHHHHHh---cCCCCEEEEcCccccCCHHHHHHHHhhh
Confidence 34444444444444332 13599999999999 9999999999877
No 153
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=64.68 E-value=25 Score=33.80 Aligned_cols=29 Identities=24% Similarity=0.523 Sum_probs=24.6
Q ss_pred CcceEEEEEecCCeeEEEEEEEeCC-eEEE
Q 006194 218 GEMNILVYDLGGGTFDVSILTIDNG-VFEV 246 (657)
Q Consensus 218 ~~~~vlv~D~Gggt~dvsv~~~~~~-~~~v 246 (657)
+.+.+|++|+||.++-++.+++.++ .+++
T Consensus 61 E~G~~LalDlGGTnlRv~~V~L~g~~~~~~ 90 (206)
T PF00349_consen 61 EKGDFLALDLGGTNLRVALVELSGNGKVEI 90 (206)
T ss_dssp TEEEEEEEEESSSSEEEEEEEEESSSEEEE
T ss_pred CCceEEEEeecCcEEEEEEEEEcCCCCcee
Confidence 5678999999999999999999876 4443
No 154
>PLN02914 hexokinase
Probab=63.60 E-value=1.7e+02 Score=32.22 Aligned_cols=62 Identities=15% Similarity=0.101 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCc--eeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEE
Q 006194 175 PAYFNDAQRQATKDAGIIAGLN--VARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTI 239 (657)
Q Consensus 175 Pa~~~~~qr~~l~~Aa~~AGl~--~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~ 239 (657)
+..-...-.+.+.+|.+.-|++ +..++|+.++.-++.++... ...+-+=+|.||=-+.+-+.
T Consensus 200 ~gv~G~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~~---~~~iGlIlGTGtNacY~E~~ 263 (490)
T PLN02914 200 SGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDD---DVMVAVILGTGTNACYVERT 263 (490)
T ss_pred CCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCCC---CceEEEEEECCeeeEEEeec
Confidence 3334455678888898887764 56789999998776655543 34444456777654444443
No 155
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=62.97 E-value=1.2e+02 Score=32.33 Aligned_cols=43 Identities=12% Similarity=0.271 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcceEEEecCcc-CcHHHHHHHHhhc
Q 006194 336 LFKKTMGPVKKALEDAGLKKTDIREIVLVGGST-RIPKIQQLLKDFF 381 (657)
Q Consensus 336 ~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s-r~p~v~~~l~~~f 381 (657)
.+.++.+.|-......+ ..+|.|+++||-+ ..+.+++.+.+.+
T Consensus 309 f~yri~k~Iga~~a~L~---G~vDaiVFTGGIGEns~~vr~~i~~~l 352 (404)
T TIGR00016 309 YVHRIAKYIGSYIASLE---GNLDAIVFTGGIGENAATVRELVLEAL 352 (404)
T ss_pred HHHHHHHHHHHHHHHhC---CCCCEEEEcCccccCCHHHHHHHHhhh
Confidence 33444444444333322 2489999999999 9999999999877
No 156
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=60.93 E-value=2e+02 Score=29.30 Aligned_cols=65 Identities=17% Similarity=0.177 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCc-HHHHHHHHhhcCCCCCCCCCCchhhhHhHHHHHHhhh
Q 006194 335 DLFKKTMGPVKKALEDAGLKKTDIREIVLVGGSTRI-PKIQQLLKDFFDGKEPSKGINPDEAVAHGAAVQGGIL 407 (657)
Q Consensus 335 ~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~-p~v~~~l~~~f~~~~v~~~~~~~~ava~GAa~~a~~~ 407 (657)
.++++....|...++.... ......+.|.||.... |++.....+.... ++...+..||.+.|...
T Consensus 227 ~Il~~aa~~i~~~~~~l~~-~~g~~~l~l~GG~~~~~~~~~~~~~~~l~~-------~~~~D~~~GA~~~A~~~ 292 (301)
T COG2971 227 RILKEAAAYIATLLEALSI-FNGSEKLSLLGGLAPSYPYYLSLFRRALLV-------PPIGDALSGAVLLALGR 292 (301)
T ss_pred HHHHHHHHHHHHHHHHHhc-ccCCceEEEeccccccchhhHHHHHHHhcC-------CccccHHHHHHHHHHHh
Confidence 4556666666666665432 2335679999999887 8888888877732 33556678888888544
No 157
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=59.92 E-value=2.2e+02 Score=29.54 Aligned_cols=211 Identities=21% Similarity=0.293 Sum_probs=103.1
Q ss_pred eCHHHHHHHHHHHHHHHHHHHh---CC---CCCcEEEEeCCCCCHHHHHHHHH---HHHHcCCceeeecchhHHHHHHhc
Q 006194 142 FSPEEISAMILQKMKETAEAYL---GK---KIKDAVVTVPAYFNDAQRQATKD---AGIIAGLNVARIINEPTAAAIAYG 212 (657)
Q Consensus 142 ~~~~el~~~~L~~l~~~a~~~~---~~---~~~~~vitVPa~~~~~qr~~l~~---Aa~~AGl~~~~li~Ep~Aaal~y~ 212 (657)
+-||..+..-.+.+-...++.+ +. .+.-+.+|.=+.....=+--..- -+-..+.+ +--++...+-.+.--
T Consensus 41 VvPe~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~gPGL~gaL~VG~~~Ak~LA~a~~kP-li~VnH~~gHi~a~~ 119 (342)
T COG0533 41 VVPELASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAGPGLGGALLVGATAAKALALALNKP-LIPVNHLEGHIEAAR 119 (342)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecCCCchhHHHHHHHHHHHHHHHhCCC-EeecchHHHHHHHHH
Confidence 5677777777776665544443 32 44555666533333222211111 11222333 233555555444333
Q ss_pred cccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 006194 213 LDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFIKLIKKKYNKDISKDNKAIGKLRR 292 (657)
Q Consensus 213 ~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~ 292 (657)
+.... ....+..=+-||+|.+..++- -+.+++++..-|..+ |+.||. +.+..|......| ...+|
T Consensus 120 l~~~~-~~p~v~LlVSGGHTqli~~~~-~g~y~ilGeTlDdA~-Gea~DK---------vAR~lGL~yPGGp-~Ie~l-- 184 (342)
T COG0533 120 LETGL-AFPPVALLVSGGHTQLIAVRG-IGRYEVLGETLDDAA-GEAFDK---------VARLLGLGYPGGP-AIEKL-- 184 (342)
T ss_pred hccCC-CCCcEEEEEecCceEEEEEcC-CCcEEEEeeechhhh-hHHHHH---------HHHHhCCCCCCcH-HHHHH--
Confidence 33221 122233333456665554432 156888887765444 355543 3344455554444 22222
Q ss_pred HHHHHHHHccCCceeEEEEee-ccCC--ceeEE------------------EecHHHHHHHHHH----HHHHHHHHHHHH
Q 006194 293 ECERAKRALSSQHQVRVEIES-LFDG--VDFSE------------------PLTRARFEELNMD----LFKKTMGPVKKA 347 (657)
Q Consensus 293 ~~e~~K~~Ls~~~~~~~~i~~-l~~~--~~~~~------------------~itr~~fe~~~~~----~~~~~~~~i~~~ 347 (657)
|++-.. . .+.+|. ...+ .|+++ .+..++.+++|.. .++-+++..+++
T Consensus 185 -A~~G~~------~-~~~fP~~~~~~~~~DfSFSGLkTa~~~~~~~~~~~~~~~~~d~~dia~sfQ~av~~~L~~kt~rA 256 (342)
T COG0533 185 -AKKGDP------D-AFEFPRPMVKGKNLDFSFSGLKTAVLRLLKKLKQKEELNEEDKEDIAASFQEAVFDMLVEKTERA 256 (342)
T ss_pred -HhcCCC------C-ceeCCccccCCCCcceehHhHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222110 0 022221 1111 22221 1223334444443 455556666777
Q ss_pred HHHcCCCCCCcceEEEecCccCcHHHHHHHHhhc
Q 006194 348 LEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFF 381 (657)
Q Consensus 348 l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f 381 (657)
++..+ .+.++++||-+....+|+++++..
T Consensus 257 l~~~~-----~~~lvi~GGVaaN~~LR~~l~~~~ 285 (342)
T COG0533 257 LKHTG-----KKELVIAGGVAANSRLREMLEEMC 285 (342)
T ss_pred HHHhC-----CCEEEEeccHHHhHHHHHHHHHHH
Confidence 77754 467999999999999999999876
No 158
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=59.66 E-value=9.8 Score=33.92 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=18.2
Q ss_pred CeEEEEEcCccceEEEEEECC
Q 006194 32 GTVIGIDLGTTYSCVGVYRNG 52 (657)
Q Consensus 32 ~~viGIDlGTt~s~va~~~~g 52 (657)
+.++|||+|+..+.+|+.++.
T Consensus 4 ~~iLalD~G~kriGvAv~d~~ 24 (138)
T PRK00109 4 GRILGLDVGTKRIGVAVSDPL 24 (138)
T ss_pred CcEEEEEeCCCEEEEEEecCC
Confidence 359999999999999998653
No 159
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=59.25 E-value=53 Score=32.61 Aligned_cols=55 Identities=31% Similarity=0.432 Sum_probs=34.3
Q ss_pred CCcceEEEecCccCcHHH----HHHHHhhcCC----CCCCC--CCCchhhhHhHHHHHHhhhcCC
Q 006194 356 TDIREIVLVGGSTRIPKI----QQLLKDFFDG----KEPSK--GINPDEAVAHGAAVQGGILSGE 410 (657)
Q Consensus 356 ~~i~~V~LvGG~sr~p~v----~~~l~~~f~~----~~v~~--~~~~~~ava~GAa~~a~~~~~~ 410 (657)
...+.|+|.|-++++|.+ ++.|++.|.. .++.. ..--.--.|.|||+.|..++|.
T Consensus 272 ~~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAnaiAGG 336 (374)
T COG2441 272 TYPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIANAIAGG 336 (374)
T ss_pred cCcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhhhhcch
Confidence 446789999999998754 5556655521 12211 1112235678999998777654
No 160
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=57.77 E-value=1.4e+02 Score=29.69 Aligned_cols=38 Identities=24% Similarity=0.213 Sum_probs=26.2
Q ss_pred HcCCceeeecchhHHHHHHhccccCC-CcceEEEEEecCC
Q 006194 192 IAGLNVARIINEPTAAAIAYGLDKKG-GEMNILVYDLGGG 230 (657)
Q Consensus 192 ~AGl~~~~li~Ep~Aaal~y~~~~~~-~~~~vlv~D~Ggg 230 (657)
..+++ +.+-|+..|+|++....... ..++++++-+|.|
T Consensus 95 ~~~~p-V~leNDanaaAlaE~~~g~~~~~~~~v~i~lgtG 133 (256)
T PRK13311 95 LIQRE-VRIDNDANCFALSEAWDPEFRTYPTVLGLILGTG 133 (256)
T ss_pred HHCCC-EEEEchhhHHHHHHHHhcCCCCCCcEEEEEECcC
Confidence 34776 57899999999877554332 3567788777765
No 161
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=56.96 E-value=35 Score=33.55 Aligned_cols=66 Identities=18% Similarity=0.251 Sum_probs=40.5
Q ss_pred eeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHH
Q 006194 198 ARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDY 267 (657)
Q Consensus 198 ~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~ 267 (657)
..+++.-.||+....++.. ....+|+|+|-|++..+++.-. .+.-+.......+.-..+...|.++
T Consensus 207 av~mDskfaav~gal~dpa--a~palvVd~GngHttaalvded--RI~gv~EHHT~~Lspekled~I~rf 272 (342)
T COG4012 207 AVAMDSKFAAVMGALVDPA--ADPALVVDYGNGHTTAALVDED--RIVGVYEHHTIRLSPEKLEDQIIRF 272 (342)
T ss_pred EEEEcchhHhhhhcccCcc--cCceEEEEccCCceEEEEecCC--eEEEEeecccccCCHHHHHHHHHHH
Confidence 3456666666666655554 3478999999999998887533 4444444444555554444444443
No 162
>PRK12440 acetate kinase; Reviewed
Probab=55.98 E-value=1.6e+02 Score=31.30 Aligned_cols=42 Identities=12% Similarity=0.165 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHH-HHHHHHhhc
Q 006194 336 LFKKTMGPVKKALEDAGLKKTDIREIVLVGGSTRIPK-IQQLLKDFF 381 (657)
Q Consensus 336 ~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~-v~~~l~~~f 381 (657)
.+.++.+.|-......+ .+|.|+++||-+.... +|+.+.+.+
T Consensus 303 f~yri~k~Ig~~~a~l~----gvDaiVFTgGIGen~~~vr~~i~~~l 345 (397)
T PRK12440 303 FTYRVAKYIASYLAALD----SLDGIIFTGGIGENSLPIRREILKNL 345 (397)
T ss_pred HHHHHHHHHHHHHHHhC----CCCEEEECCccccCcHHHHHHHHhhh
Confidence 34445555544444432 5899999999998776 999998876
No 163
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=55.89 E-value=12 Score=33.42 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=18.4
Q ss_pred CeEEEEEcCccceEEEEEECC
Q 006194 32 GTVIGIDLGTTYSCVGVYRNG 52 (657)
Q Consensus 32 ~~viGIDlGTt~s~va~~~~g 52 (657)
+.++|+|+||-.+.||+.+..
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~ 22 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDIL 22 (141)
T ss_pred ceEEEEecCCceEEEEEecCC
Confidence 468999999999999998655
No 164
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=55.47 E-value=57 Score=24.35 Aligned_cols=31 Identities=13% Similarity=0.115 Sum_probs=27.6
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q 006194 168 KDAVVTVPAYFNDAQRQATKDAGIIAGLNVA 198 (657)
Q Consensus 168 ~~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~ 198 (657)
....++.|+.++..+|..+-+.|+..||...
T Consensus 16 ~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s~ 46 (60)
T cd02640 16 DIRDMVFSPEFSKEERALIHQIAQKYGLKSR 46 (60)
T ss_pred ccceEEcCCCCCHHHHHHHHHHHHHcCCcee
Confidence 3567899999999999999999999999764
No 165
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=55.42 E-value=2.4e+02 Score=28.99 Aligned_cols=96 Identities=18% Similarity=0.223 Sum_probs=53.8
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCceeee---cchhHHHHHHhccccCC-CcceEEEEEecCCeeEEEEEEEeCCeE
Q 006194 169 DAVVTVPAYFNDAQRQATKDAGIIAGLNVARI---INEPTAAAIAYGLDKKG-GEMNILVYDLGGGTFDVSILTIDNGVF 244 (657)
Q Consensus 169 ~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~~l---i~Ep~Aaal~y~~~~~~-~~~~vlv~D~Gggt~dvsv~~~~~~~~ 244 (657)
...+|-|.--.++.|+-+.+..-. -+++..+ +..-.|.|..|....-. ..-+=+|+|-|.|-+-+--+.- + .
T Consensus 108 ~fLlteppln~penreytaeImfE-sfnvpglyiAVqavLALaaswts~~v~er~ltG~VidsGdgvThvipvaE--g-y 183 (415)
T KOG0678|consen 108 YFLLTEPPLNQPENREYTAEIMFE-SFNVPGLYIAVQAVLALAASWTSRQVGERFLTGIVIDSGDGVTHVIPVAE--G-Y 183 (415)
T ss_pred eEEecCCCCCCchhhHHHHHhhhh-hccCchHHHHHHHHHHHHHHHHHhhhhhheeeeEEEecCCCeeEEEEeec--c-e
Confidence 456788877777777776654321 2344333 22223333333222111 2223478999999776655432 2 3
Q ss_pred EEEEEeCCCCCccchhhHHHHHHH
Q 006194 245 EVLATSGDTHLGGEDFDHRVMDYF 268 (657)
Q Consensus 245 ~v~~~~~~~~lGG~~~d~~l~~~l 268 (657)
.+.+.-....+.|++++.-+...+
T Consensus 184 VigScik~iPiagrdiT~fiQ~ll 207 (415)
T KOG0678|consen 184 VIGSCIKHIPIAGRDITYFIQQLL 207 (415)
T ss_pred EEeeeeccccccCCchhHHHHHHh
Confidence 344446668899999987665554
No 166
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=54.40 E-value=9 Score=39.33 Aligned_cols=32 Identities=22% Similarity=0.071 Sum_probs=22.3
Q ss_pred hHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEE
Q 006194 204 PTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTI 239 (657)
Q Consensus 204 p~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~ 239 (657)
+.|.|...+.. -.+++++||||.|+|++++.-
T Consensus 116 ~~a~A~~la~~----~~~~I~~DmGGTTtDi~~i~~ 147 (318)
T TIGR03123 116 WLATAQLIAKR----IPECLFVDMGSTTTDIIPIID 147 (318)
T ss_pred HHHHHHHHHhc----CCCEEEEEcCccceeeEEecC
Confidence 45534444332 235899999999999999863
No 167
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=54.13 E-value=10 Score=42.42 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=17.3
Q ss_pred EEEEEcCccceEEEEEE-CCe
Q 006194 34 VIGIDLGTTYSCVGVYR-NGR 53 (657)
Q Consensus 34 viGIDlGTt~s~va~~~-~g~ 53 (657)
++|||+|||++++++++ +|+
T Consensus 2 ~lgID~GTts~Ka~l~d~~G~ 22 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDSTGD 22 (541)
T ss_pred EEEEEecCcCEEEEEEcCCCC
Confidence 69999999999999995 443
No 168
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=53.13 E-value=33 Score=37.11 Aligned_cols=64 Identities=14% Similarity=0.136 Sum_probs=45.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCc---eeeecchhHHHHHHhccccCCCcceEEEEEecCCeeEEEEEEEeC
Q 006194 175 PAYFNDAQRQATKDAGIIAGLN---VARIINEPTAAAIAYGLDKKGGEMNILVYDLGGGTFDVSILTIDN 241 (657)
Q Consensus 175 Pa~~~~~qr~~l~~Aa~~AGl~---~~~li~Ep~Aaal~y~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~ 241 (657)
+......-.+.+.+|.+.-|+. ++.++|+.++.-++..+.. +++++-+=+|.||=-+.+.+..+
T Consensus 186 ~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~---~~~~igvI~GTGtNacY~e~~~~ 252 (474)
T KOG1369|consen 186 TDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYED---PNCEIGVIFGTGTNACYMEDMRN 252 (474)
T ss_pred hhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecC---CCcEEEEEECCCccceeeeeccc
Confidence 4444556677888999998886 5678999988877665554 35677777899987666666553
No 169
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=53.00 E-value=20 Score=32.67 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=18.5
Q ss_pred EEEEEcCccceEEEEEE--CCeEEEE
Q 006194 34 VIGIDLGTTYSCVGVYR--NGRVEII 57 (657)
Q Consensus 34 viGIDlGTt~s~va~~~--~g~~~ii 57 (657)
|+|||.|++++..|+.+ ++.+.++
T Consensus 2 ILGIDPGl~~~G~av~~~~~~~~~~~ 27 (154)
T cd00529 2 ILGIDPGSRNTGYGVIEQEGRKLIYL 27 (154)
T ss_pred EEEEccCcCceEEEEEEeeCCeEEEE
Confidence 79999999999999884 3344443
No 170
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=52.47 E-value=13 Score=34.27 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=17.1
Q ss_pred CeEEEEEcCccceEEEEEE
Q 006194 32 GTVIGIDLGTTYSCVGVYR 50 (657)
Q Consensus 32 ~~viGIDlGTt~s~va~~~ 50 (657)
+.++|||-|++++..|+.+
T Consensus 2 m~iLGIDPgl~~tG~avi~ 20 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVIE 20 (164)
T ss_pred CEEEEEccccCceeEEEEE
Confidence 4799999999999999885
No 171
>PRK00736 hypothetical protein; Provisional
Probab=51.94 E-value=77 Score=24.32 Aligned_cols=27 Identities=0% Similarity=0.051 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 006194 617 DFDEKMKEVEAVCNPVIKQVYEKNGGS 643 (657)
Q Consensus 617 ~~~~kl~~L~~~~~~i~~r~~e~~~~~ 643 (657)
.-+..++.|+..+.-+..|+.+..+++
T Consensus 30 ~Qq~~i~~L~~ql~~L~~rl~~~~~~~ 56 (68)
T PRK00736 30 EQWKTVEQMRKKLDALTERFLSLEEQA 56 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 334456777777777777777766443
No 172
>PRK12408 glucokinase; Provisional
Probab=51.36 E-value=10 Score=39.51 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=20.6
Q ss_pred CCCCCCCeEEEEEcCccceEEEEEEC
Q 006194 26 DDATKLGTVIGIDLGTTYSCVGVYRN 51 (657)
Q Consensus 26 ~~~~~~~~viGIDlGTt~s~va~~~~ 51 (657)
+.-++|..++|+|+|-|+++.|+++.
T Consensus 10 ~~~~~~~~~L~~DIGGT~i~~al~d~ 35 (336)
T PRK12408 10 VAVPRPESFVAADVGGTHVRVALVCA 35 (336)
T ss_pred ccCcccccEEEEEcChhhhheeEEec
Confidence 33344567899999999999999963
No 173
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=51.07 E-value=42 Score=37.65 Aligned_cols=62 Identities=24% Similarity=0.539 Sum_probs=43.4
Q ss_pred hhchHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHhcC---C-----CCC---HHHHHHHHHHHHHHHHHHH
Q 006194 565 SRNKLETYIYNMRSTINDKLADKIDSDDKERIESTLKEALEWLDDN---Q-----NAE---KDDFDEKMKEVEAVCNPVI 633 (657)
Q Consensus 565 a~N~LE~~iy~~r~~l~~~~~~~~~~~e~~~i~~~l~~~~~WL~~~---~-----~a~---~~~~~~kl~~L~~~~~~i~ 633 (657)
+..+++..|..+|..++. +.++....+++++.|++.. + .++ .++.+++.++|.+.+.+|.
T Consensus 653 ~~d~~~~~i~~~r~~~~~---------~~~k~~~~~~~a~kw~~~~~~~q~~~~~t~~pv~~~e~~~~~~~l~~~~~~i~ 723 (727)
T KOG0103|consen 653 AFDELGKKIQEIRKAIES---------EMEKVLLEIEEAEKWLERKSNKQNKLSKTADPVPSSEIESEAKELNNTCSDII 723 (727)
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCchHHHHHhhhhhcccccccc
Confidence 344444455555544432 6778888899999999875 1 122 3889999999999999987
Q ss_pred HH
Q 006194 634 KQ 635 (657)
Q Consensus 634 ~r 635 (657)
.+
T Consensus 724 ~~ 725 (727)
T KOG0103|consen 724 SK 725 (727)
T ss_pred cc
Confidence 64
No 174
>PRK13320 pantothenate kinase; Reviewed
Probab=50.32 E-value=19 Score=35.59 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.3
Q ss_pred CeEEEEEcCccceEEEEEECCe
Q 006194 32 GTVIGIDLGTTYSCVGVYRNGR 53 (657)
Q Consensus 32 ~~viGIDlGTt~s~va~~~~g~ 53 (657)
+.++.||+|+|+++.+++++++
T Consensus 2 ~M~L~iDiGNT~ik~~~~~~~~ 23 (244)
T PRK13320 2 SMNLVIDIGNTTTKLAVFEGDE 23 (244)
T ss_pred ceEEEEEeCCCcEEEEEEECCE
Confidence 3589999999999999998764
No 175
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=49.38 E-value=17 Score=34.88 Aligned_cols=35 Identities=23% Similarity=0.224 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHHcCCc---eeeecchhHHHHHHhcc
Q 006194 179 NDAQRQATKDAGIIAGLN---VARIINEPTAAAIAYGL 213 (657)
Q Consensus 179 ~~~qr~~l~~Aa~~AGl~---~~~li~Ep~Aaal~y~~ 213 (657)
...-.+.+.+|....|++ ++.++|+.+|.-++.++
T Consensus 167 G~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y 204 (206)
T PF00349_consen 167 GKDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAY 204 (206)
T ss_dssp TSBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHT
T ss_pred CCccchhHHHHHHHhcccCcceEEEEECCHHHhhhhhc
Confidence 334466777888888876 46689999998776543
No 176
>PRK13318 pantothenate kinase; Reviewed
Probab=47.89 E-value=20 Score=35.87 Aligned_cols=20 Identities=35% Similarity=0.861 Sum_probs=17.9
Q ss_pred EEEEEcCccceEEEEEECCe
Q 006194 34 VIGIDLGTTYSCVGVYRNGR 53 (657)
Q Consensus 34 viGIDlGTt~s~va~~~~g~ 53 (657)
+++||+|.|++++++++++.
T Consensus 2 iL~IDIGnT~iK~al~d~g~ 21 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGGK 21 (258)
T ss_pred EEEEEECCCcEEEEEEECCE
Confidence 68999999999999998654
No 177
>PRK13321 pantothenate kinase; Reviewed
Probab=47.44 E-value=20 Score=35.76 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=17.8
Q ss_pred EEEEEcCccceEEEEEECCe
Q 006194 34 VIGIDLGTTYSCVGVYRNGR 53 (657)
Q Consensus 34 viGIDlGTt~s~va~~~~g~ 53 (657)
+++||+|.|++++|++++++
T Consensus 2 iL~IDIGnT~ik~gl~~~~~ 21 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGDR 21 (256)
T ss_pred EEEEEECCCeEEEEEEECCE
Confidence 68999999999999998663
No 178
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=46.62 E-value=95 Score=33.29 Aligned_cols=48 Identities=33% Similarity=0.446 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHH
Q 006194 329 FEELNMDLFKKTMGPVKKALEDAGLKKTDIREIVLVGGSTRIPKIQQL 376 (657)
Q Consensus 329 fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~ 376 (657)
++++-+-+++.+-..+.+.+.+++..+.+|..++++|-.+-.-.+...
T Consensus 55 ~~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLllGl 102 (412)
T PF14574_consen 55 LEELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLLGL 102 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHcCC
Confidence 345555666777888889999999999999999999977655555443
No 179
>PLN02902 pantothenate kinase
Probab=46.13 E-value=92 Score=36.40 Aligned_cols=51 Identities=12% Similarity=-0.098 Sum_probs=32.9
Q ss_pred CCcceEEEecCccCc-HHHHHHHHhh---c--CCCCCCCCCCchhhhHhHHHHHHhh
Q 006194 356 TDIREIVLVGGSTRI-PKIQQLLKDF---F--DGKEPSKGINPDEAVAHGAAVQGGI 406 (657)
Q Consensus 356 ~~i~~V~LvGG~sr~-p~v~~~l~~~---f--~~~~v~~~~~~~~ava~GAa~~a~~ 406 (657)
..++.|+++|.+-|- |...+.|... + +..+.....+-...-|+||.+....
T Consensus 345 ~~ikrIvF~G~fIr~h~~tm~~ls~Ai~fwSkg~~~a~FlrHeGylGAlGafl~~~~ 401 (876)
T PLN02902 345 FGLKRIFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMSYEK 401 (876)
T ss_pred cCCCEEEEecceecCCcchHHHHHHHHHHhcCCceEEEEecccchhHHHHHHhcCCc
Confidence 568899999998654 4445555433 3 2234444456667889999876643
No 180
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=45.82 E-value=65 Score=30.11 Aligned_cols=55 Identities=11% Similarity=0.395 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHH
Q 006194 571 TYIYNMRSTINDKLADKIDSDDKERIESTLKEALEWLDDN--QNAEKDDFDEKMKEVEAVCNPVI 633 (657)
Q Consensus 571 ~~iy~~r~~l~~~~~~~~~~~e~~~i~~~l~~~~~WL~~~--~~a~~~~~~~kl~~L~~~~~~i~ 633 (657)
+|+.+++..|+. ++++|++++ ++.+++++++. +..+.++.-+++-.-++++..+.
T Consensus 5 efL~~L~~~L~~-----lp~~e~~e~---l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~ 61 (181)
T PF08006_consen 5 EFLNELEKYLKK-----LPEEEREEI---LEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREIL 61 (181)
T ss_pred HHHHHHHHHHHc-----CCHHHHHHH---HHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHH
Confidence 344444444432 444444333 55555566554 12344555555444444444444
No 181
>COG4296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.53 E-value=63 Score=28.09 Aligned_cols=21 Identities=29% Similarity=0.740 Sum_probs=16.5
Q ss_pred HHHHHhcC-CCCCHHHHHHHHH
Q 006194 603 ALEWLDDN-QNAEKDDFDEKMK 623 (657)
Q Consensus 603 ~~~WL~~~-~~a~~~~~~~kl~ 623 (657)
.++||+++ ...|.++|+++..
T Consensus 91 nE~WleEDe~~iTpE~fk~Rm~ 112 (156)
T COG4296 91 NEDWLEEDEQPITPESFKERMA 112 (156)
T ss_pred hhhhhhccCCccCHHHHHHHhh
Confidence 47899988 4678999987754
No 182
>PLN02669 xylulokinase
Probab=44.88 E-value=20 Score=40.36 Aligned_cols=19 Identities=21% Similarity=0.184 Sum_probs=17.5
Q ss_pred CeEEEEEcCccceEEEEEE
Q 006194 32 GTVIGIDLGTTYSCVGVYR 50 (657)
Q Consensus 32 ~~viGIDlGTt~s~va~~~ 50 (657)
.++||||+||+.+++++++
T Consensus 8 ~~~LGiD~GT~s~Ka~l~d 26 (556)
T PLN02669 8 SLFLGFDSSTQSLKATVLD 26 (556)
T ss_pred CeEEEEecccCCeEEEEEc
Confidence 4799999999999999996
No 183
>PRK09343 prefoldin subunit beta; Provisional
Probab=43.53 E-value=2.2e+02 Score=24.67 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 006194 587 KIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVIKQVYEKNGGSSSA 646 (657)
Q Consensus 587 ~~~~~e~~~i~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e~~~~~~~~ 646 (657)
.+-..+++.+...|++-.+.++. ..+.++.+.+.|+.........+.+.-++++++
T Consensus 63 vlv~qd~~e~~~~l~~r~E~ie~----~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~~ 118 (121)
T PRK09343 63 LLVKVDKTKVEKELKERKELLEL----RSRTLEKQEKKLREKLKELQAKINEMLSKYYPQ 118 (121)
T ss_pred HHhhccHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34445667777777776666665 366777777777777777777776665444433
No 184
>PRK13326 pantothenate kinase; Reviewed
Probab=43.45 E-value=27 Score=34.88 Aligned_cols=22 Identities=23% Similarity=0.522 Sum_probs=19.5
Q ss_pred CeEEEEEcCccceEEEEEECCe
Q 006194 32 GTVIGIDLGTTYSCVGVYRNGR 53 (657)
Q Consensus 32 ~~viGIDlGTt~s~va~~~~g~ 53 (657)
+.++.||+|+|+++++++++++
T Consensus 6 ~~~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 6 SSQLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred cEEEEEEeCCCeEEEEEEECCE
Confidence 4689999999999999998765
No 185
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=43.32 E-value=1.8e+02 Score=23.72 Aligned_cols=66 Identities=15% Similarity=0.346 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHH--hhHHHHHHHhhhchHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHhcC
Q 006194 540 EEIDRMVKEAEEFAE--EDKKVRERVDSRNKLETYIYNMRSTINDKLADKIDSDDKERIESTLKEALEWLDDN 610 (657)
Q Consensus 540 ~e~~~~~~~~~~~~~--~D~~~~~~~ea~N~LE~~iy~~r~~l~~~~~~~~~~~e~~~i~~~l~~~~~WL~~~ 610 (657)
++++.++..++.+.. .+.-.....+++..++..+..+++.+.+. ...-+++..+....+++++.++
T Consensus 5 ~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~V~e~ 72 (94)
T PF05957_consen 5 AELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDA-----ADQAREQAREAAEQTEDYVREN 72 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHC
Confidence 456666666655542 23334556677777788878877777652 2223456666667777776665
No 186
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=43.11 E-value=1e+02 Score=22.89 Aligned_cols=30 Identities=13% Similarity=0.185 Sum_probs=26.6
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q 006194 169 DAVVTVPAYFNDAQRQATKDAGIIAGLNVA 198 (657)
Q Consensus 169 ~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~ 198 (657)
...++.|+.++..||..+-+.|+..||...
T Consensus 17 ~~~l~F~p~ls~~eR~~vH~lA~~~gL~s~ 46 (60)
T cd02641 17 ATELEFPPTLSSHDRLLVHELAEELGLRHE 46 (60)
T ss_pred cCcEECCCCCCHHHHHHHHHHHHHcCCceE
Confidence 367889999999999999999999998754
No 187
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=42.52 E-value=78 Score=32.06 Aligned_cols=70 Identities=16% Similarity=0.187 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHHHHHHHHhhcCCC------CCCCCCCchhhhHhHHHHHHh
Q 006194 335 DLFKKTMGPVKKALEDAGLKKTDIREIVLVGGSTRIPKIQQLLKDFFDGK------EPSKGINPDEAVAHGAAVQGG 405 (657)
Q Consensus 335 ~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~------~v~~~~~~~~ava~GAa~~a~ 405 (657)
.++++....+-..+...- ..-+++.|+|.|+.+..+.+.+.+++.+... ++....-.+.+.+.|||..+.
T Consensus 212 ~~~~~~~~~la~~l~~l~-~~~dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 212 ALINRSAQAIARLIADLK-ATLDCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred HHHHHHHHHHHHHHHHHH-HHhCCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 344444444444443221 1134678999888877776667777665221 122222346788999998763
No 188
>PRK00295 hypothetical protein; Provisional
Probab=42.16 E-value=1.3e+02 Score=23.04 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC
Q 006194 619 DEKMKEVEAVCNPVIKQVYEKNGG 642 (657)
Q Consensus 619 ~~kl~~L~~~~~~i~~r~~e~~~~ 642 (657)
+..++.|+..+.-+..|+.+..++
T Consensus 32 q~~I~~L~~ql~~L~~rl~~~~~~ 55 (68)
T PRK00295 32 QRVIERLQLQMAALIKRQEEMVGQ 55 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 444566666666667777766533
No 189
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=41.91 E-value=43 Score=30.27 Aligned_cols=25 Identities=28% Similarity=0.587 Sum_probs=0.0
Q ss_pred EEEEEcCccceEEEEE--ECCeEEEEe
Q 006194 34 VIGIDLGTTYSCVGVY--RNGRVEIIA 58 (657)
Q Consensus 34 viGIDlGTt~s~va~~--~~g~~~ii~ 58 (657)
|+|||-|++++..|++ .++.+..+.
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i~ 27 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLID 27 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEEE
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEEE
No 190
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=41.33 E-value=55 Score=24.46 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=26.3
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q 006194 169 DAVVTVPAYFNDAQRQATKDAGIIAGLNVA 198 (657)
Q Consensus 169 ~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~ 198 (657)
.-.++.|+.+++.+|+.+...|...||...
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lGL~~~ 46 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGLNHV 46 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcCCceE
Confidence 456778999999999999999999999753
No 191
>PRK13331 pantothenate kinase; Reviewed
Probab=41.13 E-value=35 Score=33.80 Aligned_cols=21 Identities=10% Similarity=0.221 Sum_probs=18.8
Q ss_pred eEEEEEcCccceEEEEEECCe
Q 006194 33 TVIGIDLGTTYSCVGVYRNGR 53 (657)
Q Consensus 33 ~viGIDlGTt~s~va~~~~g~ 53 (657)
.++.||+|+|+++++++++++
T Consensus 8 ~~L~iDiGNT~~~~g~f~~~~ 28 (251)
T PRK13331 8 EWLALMIGNSRLHWGYFSGET 28 (251)
T ss_pred cEEEEEeCCCcEEEEEEECCE
Confidence 579999999999999998664
No 192
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=40.14 E-value=82 Score=23.21 Aligned_cols=40 Identities=18% Similarity=0.299 Sum_probs=29.3
Q ss_pred HHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 006194 155 MKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNV 197 (657)
Q Consensus 155 l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa~~AGl~~ 197 (657)
+.+..+.++... .-.++.|+ ++..+|..+.+.|...||..
T Consensus 4 i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 4 IKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred HHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 344444444333 45678898 89999999999999999875
No 193
>PRK07157 acetate kinase; Provisional
Probab=39.31 E-value=2.6e+02 Score=29.84 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCcHH-HHHHHHhhc
Q 006194 336 LFKKTMGPVKKALEDAGLKKTDIREIVLVGGSTRIPK-IQQLLKDFF 381 (657)
Q Consensus 336 ~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~-v~~~l~~~f 381 (657)
.+.++.+.|-......+ ..+|.|+++||-+.... +|+.+.+.+
T Consensus 302 f~yri~k~Ig~~~a~L~---G~vDaiVFTgGIGen~~~vr~~i~~~l 345 (400)
T PRK07157 302 YAQKIVDYLANYINKIG---KKIDAIVFTAGVGENSAFVRELVINKI 345 (400)
T ss_pred HHHHHHHHHHHHHHHhC---CCCCEEEECCccccCcHHHHHHHHhhc
Confidence 33444444444433322 25899999999998776 999998877
No 194
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=39.24 E-value=1.2e+02 Score=32.34 Aligned_cols=30 Identities=27% Similarity=0.624 Sum_probs=24.5
Q ss_pred CcceEEEEEecCCeeEEEEEEEe-CCeEEEE
Q 006194 218 GEMNILVYDLGGGTFDVSILTID-NGVFEVL 247 (657)
Q Consensus 218 ~~~~vlv~D~Gggt~dvsv~~~~-~~~~~v~ 247 (657)
+.+.+|++|+||..+-++.+++. .+.+++.
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~~ 103 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVLGGDGTFDIE 103 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEeCCCCCcccc
Confidence 46789999999999999999998 3454443
No 195
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=37.21 E-value=1.2e+02 Score=22.91 Aligned_cols=42 Identities=21% Similarity=0.297 Sum_probs=27.7
Q ss_pred hhhchHHHHHHHHHHHHhhh-hhcCCCHHHHHHHHHHHHHHHH
Q 006194 564 DSRNKLETYIYNMRSTINDK-LADKIDSDDKERIESTLKEALE 605 (657)
Q Consensus 564 ea~N~LE~~iy~~r~~l~~~-~~~~~~~~e~~~i~~~l~~~~~ 605 (657)
.....++..|..+..+|..+ |....+++-.+.-...+.++..
T Consensus 11 Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~ 53 (66)
T PF10458_consen 11 KELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEE 53 (66)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHH
Confidence 33445666677778888755 7777887777766666665544
No 196
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=36.92 E-value=2.5e+02 Score=28.86 Aligned_cols=84 Identities=19% Similarity=0.331 Sum_probs=50.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHhcCCCC--
Q 006194 536 RLSQEEIDRMVKEAEEFAEEDKKVRERVDSRNKLETYIYNMRSTINDKLADKIDSDDKERIESTLKEALEWLDDNQNA-- 613 (657)
Q Consensus 536 ~ls~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LE~~iy~~r~~l~~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~a-- 613 (657)
..+++++.++++++... +.+.........+++.-+...+..++. ..+++.++...+++++.-++....-
T Consensus 200 ~~d~~eL~~lk~~l~~~---~~ei~~~~~~l~e~~~~l~~l~~~I~~------~~~~k~e~~~~I~~ae~~~~~~r~~t~ 270 (312)
T smart00787 200 DCDPTELDRAKEKLKKL---LQEIMIKVKKLEELEEELQELESKIED------LTNKKSELNTEIAEAEKKLEQCRGFTF 270 (312)
T ss_pred hCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 35677888777554433 333333333344444455555555554 3457788999999999988877433
Q ss_pred -CHHHHHHHHHHHHHH
Q 006194 614 -EKDDFDEKMKEVEAV 628 (657)
Q Consensus 614 -~~~~~~~kl~~L~~~ 628 (657)
+...++++++.|+.+
T Consensus 271 ~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 271 KEIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 344555555555544
No 197
>PRK04406 hypothetical protein; Provisional
Probab=36.63 E-value=1.8e+02 Score=22.84 Aligned_cols=24 Identities=8% Similarity=0.124 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC
Q 006194 619 DEKMKEVEAVCNPVIKQVYEKNGG 642 (657)
Q Consensus 619 ~~kl~~L~~~~~~i~~r~~e~~~~ 642 (657)
+..++.|+..+.-+..|+.+..++
T Consensus 38 q~~I~~L~~ql~~L~~rl~~~~~~ 61 (75)
T PRK04406 38 QLLITKMQDQMKYVVGKVKNMDSS 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 445566666667677777776543
No 198
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=35.63 E-value=2.4e+02 Score=29.05 Aligned_cols=198 Identities=15% Similarity=0.159 Sum_probs=92.0
Q ss_pred HHcCCceeeecchhHHHHHHhccccC-----------CCcceEEEEEecCCeeEEEEEEEeCCeEEEEEEe-CCCCCcc-
Q 006194 191 IIAGLNVARIINEPTAAAIAYGLDKK-----------GGEMNILVYDLGGGTFDVSILTIDNGVFEVLATS-GDTHLGG- 257 (657)
Q Consensus 191 ~~AGl~~~~li~Ep~Aaal~y~~~~~-----------~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~-~~~~lGG- 257 (657)
+..|++.+.+||+=+|.|+....-.. ......+|+-.|.|-=-..++. .++...++.+. |...+.-
T Consensus 88 ~~lg~~~v~liNDfeA~a~gl~~L~~~~l~~l~~g~~~~~~~~~Vig~GTGLG~a~l~~-~~~~~~v~~sEgGH~~fap~ 166 (316)
T PF02685_consen 88 QRLGIPRVRLINDFEAQAYGLPALDPEDLVTLQPGEPDPGGPRAVIGPGTGLGVALLVP-DGDGYYVLPSEGGHVDFAPR 166 (316)
T ss_dssp CCCT-TCEEEEEHHHHHHHHHHHHHHCCECCHCCEESSTTS-EEEEEESSSEEEEEEEE-ETTEEEEEEE-GGGSB---S
T ss_pred HHhCCceEEEEcccchheeccCCCCHHHeeeccCCCCCCCCcEEEEEcCCCcEEEEEEe-cCCceEeCCCccccccCCCC
Confidence 34688889999999999887622111 1456788988887754444444 45554466554 4444443
Q ss_pred chhhHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHccCCceeEEEEeeccCCceeEEEecHHHH---HHHHH
Q 006194 258 EDFDHRVMDYFIKLIKKKYNKDISKDNKAIGKLRRECERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARF---EELNM 334 (657)
Q Consensus 258 ~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~l~~~~~~~~~itr~~f---e~~~~ 334 (657)
.+.+..|.+++.+++..-.-.++ -+-+-+.+|.+.....+ ..+.. ..-.-.|++.-. ..+|.
T Consensus 167 ~~~e~~l~~~l~~~~~~vs~E~v-lSG~GL~~ly~~l~~~~----~~~~~----------~~~~~~I~~~A~~~~d~~a~ 231 (316)
T PF02685_consen 167 TDEEAELLRFLRRRYGRVSVERV-LSGRGLENLYRFLAGER----GAEPP----------LLSAAEISAAALEGGDPLAR 231 (316)
T ss_dssp SHHHHHHHHHHHHHCTS-BHHHC-SSHHHHHHHHHHHHCCT----T--S--------------HHHHHHHHHCT--HHHH
T ss_pred CHHHHHHHHHHHHhcCCceeEee-cchhhHHHHHHHHHhcc----CCCCC----------CCCHHHHHHHHHcCCCHHHH
Confidence 45566777776655511000011 12234444444322211 00000 000112233222 24555
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcceEEEecCcc-CcHHHHH--HHHhhc----------CCCCCCCCCCchhhhHhHHH
Q 006194 335 DLFKKTMGPVKKALEDAGLKKTDIREIVLVGGST-RIPKIQQ--LLKDFF----------DGKEPSKGINPDEAVAHGAA 401 (657)
Q Consensus 335 ~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s-r~p~v~~--~l~~~f----------~~~~v~~~~~~~~ava~GAa 401 (657)
..++.+...+-+.....-+....-..|+|.||-+ ++..+-+ .+.+.| ...++....|+ .+.-.||+
T Consensus 232 ~al~~f~~~lg~~agdlaL~~~a~gGvyiaGGI~~~~~~~l~~~~F~~~F~~kg~~~~~l~~iPv~li~~~-~~gL~Gaa 310 (316)
T PF02685_consen 232 EALDLFARILGRVAGDLALTFLARGGVYIAGGIAPRLLPLLDESAFREAFEDKGRMSDLLEDIPVYLITDP-DAGLLGAA 310 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCEEEEE-TTGGGGHHHHHCSSHHHHHH--GGGHHHHTT--EEEE--S--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeeEEEecchhhHHHHHcChhHHHHHHhccCCcHHHHhcCcEEEEeCC-CHHHHHHH
Confidence 5555555555555554433333346899999985 3322211 222333 11233333343 36678988
Q ss_pred HHHh
Q 006194 402 VQGG 405 (657)
Q Consensus 402 ~~a~ 405 (657)
.++.
T Consensus 311 ~~a~ 314 (316)
T PF02685_consen 311 AYAR 314 (316)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8774
No 199
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=35.06 E-value=53 Score=34.43 Aligned_cols=46 Identities=24% Similarity=0.165 Sum_probs=33.1
Q ss_pred CcceEEEecCccCcHHHHHHHHhhcCCC-C--CCCCCCchhhhHhHHHH
Q 006194 357 DIREIVLVGGSTRIPKIQQLLKDFFDGK-E--PSKGINPDEAVAHGAAV 402 (657)
Q Consensus 357 ~i~~V~LvGG~sr~p~v~~~l~~~f~~~-~--v~~~~~~~~ava~GAa~ 402 (657)
+++.|++.||-+..+.+++.+.+.+.-. + +....+-.++.|.||..
T Consensus 293 ~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~r 341 (351)
T TIGR02707 293 KVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGALR 341 (351)
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHHH
Confidence 5799999999999998889888877221 2 23333446778888754
No 200
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=34.93 E-value=3e+02 Score=23.78 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 006194 592 DKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVIKQVYEKNGGSSSAD 647 (657)
Q Consensus 592 e~~~i~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e~~~~~~~~~ 647 (657)
.++.+.+.|++-.+.|+-. ...++..-+.|+.-++.+...++.+-|++.+++
T Consensus 67 ~k~~~~~eL~er~E~Le~r----i~tLekQe~~l~e~l~eLq~~i~~~l~~~~~~~ 118 (119)
T COG1382 67 SKEEAVDELEERKETLELR----IKTLEKQEEKLQERLEELQSEIQKALGDAANGG 118 (119)
T ss_pred hHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 4455555555555544442 344555555555555666666666665555443
No 201
>PRK02119 hypothetical protein; Provisional
Probab=34.78 E-value=2e+02 Score=22.40 Aligned_cols=24 Identities=0% Similarity=0.012 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC
Q 006194 619 DEKMKEVEAVCNPVIKQVYEKNGG 642 (657)
Q Consensus 619 ~~kl~~L~~~~~~i~~r~~e~~~~ 642 (657)
+..++.|+..+.-+..|+.+.+++
T Consensus 36 q~~id~L~~ql~~L~~rl~~~~~~ 59 (73)
T PRK02119 36 QFVIDKMQVQLRYMANKLKDMQPS 59 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 444566666667677777776544
No 202
>PF07865 DUF1652: Protein of unknown function (DUF1652); InterPro: IPR012448 The proteins in this entry have not been characterised.
Probab=34.51 E-value=1.5e+02 Score=22.85 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=34.2
Q ss_pred eEEEEEEcCCCcEEEEEEecCCcceeEEEEecc--CCCCCHHHHHHHHHHHH
Q 006194 501 IEVTFEVDANGILHVTAEDKGAKNKQSITIIND--KGRLSQEEIDRMVKEAE 550 (657)
Q Consensus 501 i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~--~~~ls~~e~~~~~~~~~ 550 (657)
....++++.+|.++|...+..+|.. .++++.- ..-.|..+|.+++.+++
T Consensus 15 l~C~ct~~~~~smtvrl~d~~sg~~-~l~vtGI~~~~l~s~rdI~~LI~eLr 65 (69)
T PF07865_consen 15 LRCECTIAPDGSMTVRLFDPASGRV-ELTVTGISTSALNSSRDIVRLIAELR 65 (69)
T ss_pred ceeEEEECCCCcEEEEEecCCCCcE-EEEEcCcCHHHcCCHHHHHHHHHHHH
Confidence 5678899999999999999988875 2233221 13356677777776554
No 203
>PRK10972 Z-ring-associated protein; Provisional
Probab=34.51 E-value=2.9e+02 Score=23.49 Aligned_cols=63 Identities=5% Similarity=0.244 Sum_probs=45.4
Q ss_pred chHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHhcC-C-CCCHHHHHHHHHHHHHHHHHHHHH
Q 006194 567 NKLETYIYNMRSTINDKLADKIDSDDKERIESTLKEALEWLDDN-Q-NAEKDDFDEKMKEVEAVCNPVIKQ 635 (657)
Q Consensus 567 N~LE~~iy~~r~~l~~~~~~~~~~~e~~~i~~~l~~~~~WL~~~-~-~a~~~~~~~kl~~L~~~~~~i~~r 635 (657)
+.|+.-+.++|+. ..+...||=.+..+||=+-++|... . .....++++++..|.+.++.....
T Consensus 32 ~~Ld~km~~ir~~------~kv~~~EriavmaALNl~~ELl~~k~~~~~~~~~~~~rI~~L~~~ld~AL~~ 96 (109)
T PRK10972 32 EDLNQRLQDLKER------TRVTNTEQLVFIAALNICYELAQEKAKTRDYAANMEQRIRMLQQTIEQALLE 96 (109)
T ss_pred HHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444455532 2345668889999999999999875 2 345689999999999998888653
No 204
>PRK12379 propionate/acetate kinase; Provisional
Probab=33.50 E-value=2.3e+02 Score=30.17 Aligned_cols=42 Identities=12% Similarity=0.274 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcceEEEecCccC-cHHHHHHHHhhc
Q 006194 336 LFKKTMGPVKKALEDAGLKKTDIREIVLVGGSTR-IPKIQQLLKDFF 381 (657)
Q Consensus 336 ~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr-~p~v~~~l~~~f 381 (657)
.+.++.+.|-...... ..+|.|+++||-+. .+.+|+.+-+.+
T Consensus 300 f~yri~k~IGa~~a~L----~~vDaIVFTGGIGen~~~vR~~i~~~L 342 (396)
T PRK12379 300 FVHRIARHIAGHAASL----HRLDGIIFTGGIGENSSLIRRLVMEHL 342 (396)
T ss_pred HHHHHHHHHHHHHHHh----CCCCEEEECCccccCcHHHHHHHHhhh
Confidence 3444444444444332 25899999999875 578888887765
No 205
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=32.48 E-value=28 Score=30.70 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=15.1
Q ss_pred EEEEcCccceEEEEEEC
Q 006194 35 IGIDLGTTYSCVGVYRN 51 (657)
Q Consensus 35 iGIDlGTt~s~va~~~~ 51 (657)
+|||+|+..+.+|+.++
T Consensus 1 laiD~G~kriGvA~~d~ 17 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDI 17 (130)
T ss_pred CeEccCCCeEEEEEECC
Confidence 59999999999998754
No 206
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=32.38 E-value=3.9e+02 Score=30.03 Aligned_cols=102 Identities=13% Similarity=0.191 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHhcC-------
Q 006194 538 SQEEIDRMVKEAEEFAEEDKKVRERVDSRNKLETYIYNMRSTINDKLADKIDSDDKERIESTLKEALEWLDDN------- 610 (657)
Q Consensus 538 s~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LE~~iy~~r~~l~~~~~~~~~~~e~~~i~~~l~~~~~WL~~~------- 610 (657)
|..+.+++.+.++++.+.=.....-..-++++++|--++...-. .++-++.+..+..+.++++..-+...
T Consensus 162 T~~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~---~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~ 238 (555)
T TIGR03545 162 TVETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKK---KDIKNPLELQKIKEEFDKLKKEGKADKQKIKSA 238 (555)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHh---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555444433322222222236677777655554222 23445554444444444333333221
Q ss_pred ---CCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 006194 611 ---QNAEKDDFDEKMKEVEAVCNPVIKQVYEKNGG 642 (657)
Q Consensus 611 ---~~a~~~~~~~kl~~L~~~~~~i~~r~~e~~~~ 642 (657)
-..+.+.+++.+++|++.-+.=..|..+.++.
T Consensus 239 ~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~~~~~ 273 (555)
T TIGR03545 239 KNDLQNDKKQLKADLAELKKAPQNDLKRLENKYAI 273 (555)
T ss_pred HHHHHHhHHHHHHHHHHHHhccHhHHHHHHHHhCC
Confidence 12357788888888888888888888888864
No 207
>PLN02377 3-ketoacyl-CoA synthase
Probab=32.10 E-value=1.2e+02 Score=33.58 Aligned_cols=55 Identities=9% Similarity=0.227 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEE-ecCccCcHHHHHHHHhhcC
Q 006194 328 RFEELNMDLFKKTMGPVKKALEDAGLKKTDIREIVL-VGGSTRIPKIQQLLKDFFD 382 (657)
Q Consensus 328 ~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~L-vGG~sr~p~v~~~l~~~f~ 382 (657)
.++...++...=+...++++|+++++++.+||.|++ +.+....|.+--.|.+.++
T Consensus 164 ~~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LG 219 (502)
T PLN02377 164 SMAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYK 219 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhC
Confidence 344555555555677888999999999999999987 4444468999999999993
No 208
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=31.73 E-value=84 Score=31.45 Aligned_cols=66 Identities=21% Similarity=0.317 Sum_probs=40.4
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeecchhHHHHHHhccccCC-----------CcceEEEEEecCCeeEE
Q 006194 168 KDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKG-----------GEMNILVYDLGGGTFDV 234 (657)
Q Consensus 168 ~~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~-----------~~~~vlv~D~Gggt~dv 234 (657)
.++|+|--..=-..|+..-+.. -..|++.-+++-+||-+|+.||++... +++.-|-+=+-+||+..
T Consensus 251 ~H~VLswt~~D~N~qk~LNrkl-lk~gl~r~~IVMDPTTcALGYGieyai~~m~RiRlaaLkGD~~l~mPmSSGtTNA 327 (403)
T COG2069 251 DHVVLSWTQMDVNMQKTLNRKL-LKRGLPRDRIVMDPTTCALGYGIEYAITNMERIRLAALKGDEDLQMPMSSGTTNA 327 (403)
T ss_pred CceEEEeeccChHHHHHHHHHH-HHccCChhheeeccchhhhccceeeehhHHHHHHHHhccCcccccccccCCCcch
Confidence 3667764322223444444443 346799999999999999999887543 33444444555555443
No 209
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=31.70 E-value=1.1e+02 Score=25.80 Aligned_cols=45 Identities=24% Similarity=0.358 Sum_probs=31.0
Q ss_pred eeEEEEEEcCC-CcEEEEEEecCCcceeEEEEeccCCCCCHHHHHHHHHHHHHH
Q 006194 500 QIEVTFEVDAN-GILHVTAEDKGAKNKQSITIINDKGRLSQEEIDRMVKEAEEF 552 (657)
Q Consensus 500 ~i~v~~~~d~~-g~l~v~~~~~~~~~~~~~~i~~~~~~ls~~e~~~~~~~~~~~ 552 (657)
...+.|.+|.+ |.+.|.+.|..||+... .++++++-++.+.+.++
T Consensus 54 ~~~l~F~vde~~~~~vVkViD~~T~eVIR--------qIP~Ee~l~l~~~l~e~ 99 (107)
T PF03646_consen 54 NTSLRFSVDEESGRVVVKVIDKETGEVIR--------QIPPEELLDLAKRLREL 99 (107)
T ss_dssp S--EEEEEEEETTEEEEEEEETTT-SEEE--------EE-HHHHHHHHHHHHHH
T ss_pred CCceEEEEecCCCcEEEEEEECCCCcEEE--------eCCcHHHHHHHHHHHHH
Confidence 35688889875 88999999999987532 36688887777666654
No 210
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=31.23 E-value=2.8e+02 Score=25.39 Aligned_cols=82 Identities=22% Similarity=0.280 Sum_probs=49.5
Q ss_pred eCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHH----------------HHHHHHHHHHcCCceeeecchhH
Q 006194 142 FSPEEISAMILQKMKETAEAYLGKKIKDAVVTVPAYFNDAQ----------------RQATKDAGIIAGLNVARIINEPT 205 (657)
Q Consensus 142 ~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~q----------------r~~l~~Aa~~AGl~~~~li~Ep~ 205 (657)
.++++++..+.+.+.+....+- .. .+.|++|...+... .+.+.+ ..+++ +.+.++..
T Consensus 30 ~~~~~~~~~l~~~i~~~~~~~~-~~--gIgi~~pG~v~~~~g~i~~~~~~~~~~~~l~~~l~~---~~~~p-v~i~Nd~~ 102 (179)
T PF00480_consen 30 TSPEELLDALAELIERLLADYG-RS--GIGISVPGIVDSEKGRIISSPNPGWENIPLKEELEE---RFGVP-VIIENDAN 102 (179)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHT-CE--EEEEEESSEEETTTTEEEECSSGTGTTCEHHHHHHH---HHTSE-EEEEEHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhcc-cc--cEEEeccccCcCCCCeEEecCCCCcccCCHHHHhhc---ccceE-EEEecCCC
Confidence 4678887777776666665542 11 55555554332221 223332 34664 57899999
Q ss_pred HHHHHhccccCC-CcceEEEEEecCC
Q 006194 206 AAAIAYGLDKKG-GEMNILVYDLGGG 230 (657)
Q Consensus 206 Aaal~y~~~~~~-~~~~vlv~D~Ggg 230 (657)
|+|++....... ..++++++-+|.|
T Consensus 103 ~~a~ae~~~~~~~~~~~~~~l~ig~G 128 (179)
T PF00480_consen 103 AAALAEYWFGAAKDCDNFLYLYIGTG 128 (179)
T ss_dssp HHHHHHHHHSTTTTTSSEEEEEESSS
T ss_pred cceeehhhcCccCCcceEEEEEeecC
Confidence 999887654332 4567888888876
No 211
>PRK02793 phi X174 lysis protein; Provisional
Probab=31.03 E-value=2.5e+02 Score=21.77 Aligned_cols=25 Identities=4% Similarity=0.102 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCC
Q 006194 619 DEKMKEVEAVCNPVIKQVYEKNGGS 643 (657)
Q Consensus 619 ~~kl~~L~~~~~~i~~r~~e~~~~~ 643 (657)
+..++.|+..+.-+..|+.+...+.
T Consensus 35 q~~I~~L~~~l~~L~~rl~~~~~~~ 59 (72)
T PRK02793 35 EMEMAKLRDHLRLLTEKLKASQPSN 59 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccc
Confidence 4455666666777777777765443
No 212
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=30.94 E-value=62 Score=35.48 Aligned_cols=19 Identities=42% Similarity=0.611 Sum_probs=17.5
Q ss_pred CeEEEEEcCccceEEEEEE
Q 006194 32 GTVIGIDLGTTYSCVGVYR 50 (657)
Q Consensus 32 ~~viGIDlGTt~s~va~~~ 50 (657)
..++|||.|||.+++++++
T Consensus 6 ~~~~gIDvGTtSaR~~v~~ 24 (516)
T KOG2517|consen 6 PVVLGIDVGTTSARALVFN 24 (516)
T ss_pred ceEEEEEcCCCceEEEEEe
Confidence 4789999999999999996
No 213
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=30.80 E-value=62 Score=33.46 Aligned_cols=41 Identities=32% Similarity=0.292 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006194 599 TLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVIKQVYEKN 640 (657)
Q Consensus 599 ~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e~~ 640 (657)
.|+++++||.+++. +++.+.+++.+-++.+-|+.-+|.|.=
T Consensus 9 ~LeeLe~kLa~~d~-~Kd~V~~~I~ea~~sILPlRL~FNeFi 49 (379)
T PF11593_consen 9 KLEELEEKLASNDN-SKDSVMDKISEAQDSILPLRLQFNEFI 49 (379)
T ss_pred cHHHHHHHHhcCCc-hHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 46777888886544 788888888888888888777776653
No 214
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=30.72 E-value=4e+02 Score=24.01 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=23.9
Q ss_pred eEEEEEecCCeeEEEEEEEeCCeEEEEEEe
Q 006194 221 NILVYDLGGGTFDVSILTIDNGVFEVLATS 250 (657)
Q Consensus 221 ~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~ 250 (657)
++|-+|-|-.++-+++++..++.++.+...
T Consensus 1 rILGIDPGl~~~G~av~~~~~~~~~~~~~g 30 (154)
T cd00529 1 RILGIDPGSRNTGYGVIEQEGRKLIYLASG 30 (154)
T ss_pred CEEEEccCcCceEEEEEEeeCCeEEEEEee
Confidence 367899999999999999887776665543
No 215
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=30.58 E-value=6.4e+02 Score=26.30 Aligned_cols=221 Identities=15% Similarity=0.122 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCC---cEEEEeCCCCCHHHHHHHHHHHHHcCC--ceeeecchhHHHHHHhccccCCCcceE
Q 006194 148 SAMILQKMKETAEAYLGKKIK---DAVVTVPAYFNDAQRQATKDAGIIAGL--NVARIINEPTAAAIAYGLDKKGGEMNI 222 (657)
Q Consensus 148 ~~~~L~~l~~~a~~~~~~~~~---~~vitVPa~~~~~qr~~l~~Aa~~AGl--~~~~li~Ep~Aaal~y~~~~~~~~~~v 222 (657)
=..-+..+.+.+-...+..+. -+.+|+-....-.-+.-+.-|-..|+- +++--+..-.|-|+..-+......-.+
T Consensus 82 Hr~ni~~~iqral~aa~~~p~dldaIAVT~gPGl~lsL~vGl~fA~glA~~l~kPlipVHHMeAHAL~~rl~~~~v~FPF 161 (405)
T KOG2707|consen 82 HRENIPRLIQRALDAAGLSPKDLDAIAVTRGPGLPLSLKVGLSFAKGLAVKLQKPLIPVHHMEAHALSIRLVDDSVRFPF 161 (405)
T ss_pred HHHHHHHHHHHHHHHcCCCcccceeEEEecCCCceeehhhhHHHHHHHHHhccCCccchhHHHHhHHHHHhccCCcCCce
Confidence 334455555555544454443 456777556665555666666555542 223346777888887766554434446
Q ss_pred EEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcc
Q 006194 223 LVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFIKLIKKKYNKDISKDNKAIGKLRRECERAKRALS 302 (657)
Q Consensus 223 lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls 302 (657)
+.+=+-||.+-+.+.+- -+.++.++..-|... |+.||.. .+..|...... .....-+++|..-..-|
T Consensus 162 l~lLvSGGH~llvla~~-~~~~~llg~TvDiAp-Ge~lDK~---------ar~Lgl~~~~e--~~~~~g~aie~la~~~s 228 (405)
T KOG2707|consen 162 LALLVSGGHTLLVLANG-VGDHELLGQTVDIAP-GEALDKC---------ARRLGLLGHPE--DARSGGKAIEHLANRAS 228 (405)
T ss_pred eeEeeeCCceEEEEecc-ccceeeeecccccch-HHHHHHH---------HHHhcCCCCcc--chhhhhhHHHHHHhccC
Confidence 66666677776665542 235566665554333 4555532 22222222111 01111112221111111
Q ss_pred C------------CceeEEEEeeccCC---------ceeEEEecHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcce
Q 006194 303 S------------QHQVRVEIESLFDG---------VDFSEPLTRARFE-ELNMDLFKKTMGPVKKALEDAGLKKTDIRE 360 (657)
Q Consensus 303 ~------------~~~~~~~i~~l~~~---------~~~~~~itr~~fe-~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ 360 (657)
. ....++++..+... ..-.....+.+|- ++-...+.-+.+....+++.+.+.+..+..
T Consensus 229 ~~~~l~~piPL~~~~~~nFSFsglk~~~~~~i~k~~k~e~~~s~~~dfaa~lQ~tv~~Hi~~Kt~~ai~~~~l~~~~~~~ 308 (405)
T KOG2707|consen 229 ADLHLKFPIPLKNVKKCNFSFSGLKTSYRRIIEKLEKNEETLSEIADFAASLQRTVFRHISSKTHRAIKSLLLQPKNVKQ 308 (405)
T ss_pred ccccccCCCCccccccCCccHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCce
Confidence 1 01111111100000 0000111222332 222234455566666777766666677789
Q ss_pred EEEecCccCcHHHHHHHHhhc
Q 006194 361 IVLVGGSTRIPKIQQLLKDFF 381 (657)
Q Consensus 361 V~LvGG~sr~p~v~~~l~~~f 381 (657)
.++.||-++..+++..|+...
T Consensus 309 lV~SGGVAsN~yir~~le~l~ 329 (405)
T KOG2707|consen 309 LVISGGVASNQYIRGALEKLS 329 (405)
T ss_pred EEEcCCccchHHHHHHHHHHH
Confidence 999999999999999999876
No 216
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=29.46 E-value=4.7e+02 Score=27.89 Aligned_cols=43 Identities=9% Similarity=0.062 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcceEEEecCccC-cHHHHHHHHhhc
Q 006194 336 LFKKTMGPVKKALEDAGLKKTDIREIVLVGGSTR-IPKIQQLLKDFF 381 (657)
Q Consensus 336 ~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr-~p~v~~~l~~~f 381 (657)
.+.++.+.|-....... ..+|.|+++||-+. .+.+++.+.+.+
T Consensus 302 ~~y~i~k~Ig~~~a~l~---G~vDaivfTGGige~~~~vr~~~~~~l 345 (388)
T PF00871_consen 302 FAYQIAKYIGAYAAVLE---GGVDAIVFTGGIGENSALVRERICRKL 345 (388)
T ss_dssp HHHHHHHHHHHHHHHHT---SS-SEEEEEHHHHHHTHHHHHHHHCTG
T ss_pred HHHHHHHHHHHHHHhhc---cCCCEEEEccccccchHHHHHHHHhhc
Confidence 34444444444444331 35899999999996 578999988766
No 217
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=29.11 E-value=5.7e+02 Score=25.18 Aligned_cols=41 Identities=12% Similarity=0.281 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006194 596 IESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVIKQVYEKN 640 (657)
Q Consensus 596 i~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e~~ 640 (657)
.+..++.++.-+.. .+..|..-|..|+.+.+.|-.+.....
T Consensus 189 ~k~~v~~Le~~v~~----aK~~Y~~ALrnLE~ISeeIH~~R~~~~ 229 (239)
T PF05276_consen 189 QKEKVEELEAKVKQ----AKSRYSEALRNLEQISEEIHEQRRRRS 229 (239)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 33444444443333 588999999999999999998766655
No 218
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=28.97 E-value=4.6e+02 Score=28.26 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=22.5
Q ss_pred HHhhHHHHHHHhhhchHHHHHHHHHHHHhh
Q 006194 553 AEEDKKVRERVDSRNKLETYIYNMRSTIND 582 (657)
Q Consensus 553 ~~~D~~~~~~~ea~N~LE~~iy~~r~~l~~ 582 (657)
...+++.|+...-.|.+++|...|+.+.+.
T Consensus 298 ~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~ 327 (622)
T COG5185 298 KTLREKWRALKSDSNKYENYVNAMKQKSQE 327 (622)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 344566677777788999999999888764
No 219
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=28.74 E-value=5.3e+02 Score=26.87 Aligned_cols=36 Identities=17% Similarity=0.402 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 006194 587 KIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVC 629 (657)
Q Consensus 587 ~~~~~e~~~i~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~ 629 (657)
.++++||.++-+.+|++..-+++ .+.++.++|++..
T Consensus 48 ~l~~eer~~~G~~~n~~k~~~~~-------~~~~~~~~l~~~~ 83 (339)
T PRK00488 48 KLPPEERKEAGALINELKQAIEA-------ALEERKEELEAAA 83 (339)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 46899999999999998887755 5666666665544
No 220
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=28.70 E-value=8.5e+02 Score=27.09 Aligned_cols=100 Identities=15% Similarity=0.239 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHhhhhhc-----CCCHHHHHHHHHHHHHHHHHHhcCC
Q 006194 537 LSQEEIDRMVKEAEEFAEEDKKVRERVDSRNKLETYIYNMRSTINDKLAD-----KIDSDDKERIESTLKEALEWLDDNQ 611 (657)
Q Consensus 537 ls~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LE~~iy~~r~~l~~~~~~-----~~~~~e~~~i~~~l~~~~~WL~~~~ 611 (657)
...+++.++.++++++..+-...+...++.+.-..++..++......... ..+..+..++...+.+-..-+..
T Consensus 68 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 145 (525)
T TIGR02231 68 PDPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLT-- 145 (525)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHH--
Confidence 34567777777766655444433333444333334444444322111111 12333333433333333333332
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006194 612 NAEKDDFDEKMKEVEAVCNPVIKQVYEKN 640 (657)
Q Consensus 612 ~a~~~~~~~kl~~L~~~~~~i~~r~~e~~ 640 (657)
...+++.++++++.....+..++...+
T Consensus 146 --~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 146 --EDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 244666666777766666666655444
No 221
>PTZ00107 hexokinase; Provisional
Probab=28.57 E-value=1.5e+02 Score=32.50 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=22.3
Q ss_pred CcceEEEEEecCCeeEEEEEEEeCC
Q 006194 218 GEMNILVYDLGGGTFDVSILTIDNG 242 (657)
Q Consensus 218 ~~~~vlv~D~Gggt~dvsv~~~~~~ 242 (657)
+.+.+|.+|+||.++-|..+++.++
T Consensus 72 E~G~fLAlDlGGTN~RV~~V~L~g~ 96 (464)
T PTZ00107 72 EKGVYYAIDFGGTNFRAVRVSLRGG 96 (464)
T ss_pred ccceEEEEecCCceEEEEEEEeCCC
Confidence 4667999999999999999999864
No 222
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=28.36 E-value=41 Score=36.18 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=19.5
Q ss_pred CCeEEEEEcCccceEEEEEE-CCe
Q 006194 31 LGTVIGIDLGTTYSCVGVYR-NGR 53 (657)
Q Consensus 31 ~~~viGIDlGTt~s~va~~~-~g~ 53 (657)
++++++||-|||++++.+++ +|.
T Consensus 4 ~~yIlAiDqGTTssRaivfd~~g~ 27 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDEDGN 27 (499)
T ss_pred ccEEEEEecCCcceeEEEECCCCC
Confidence 46999999999999999884 444
No 223
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=28.23 E-value=59 Score=32.11 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccCc
Q 006194 326 RARFEELNMDLFKKTMGPVKKALEDAGLKKTDIREIVLVGGSTRI 370 (657)
Q Consensus 326 r~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~ 370 (657)
++.-+.+-..++......|+..+++.......--.|+++||.++.
T Consensus 175 ~~T~~ai~sG~~~g~~~~i~~~i~~~~~~~~~~~~vi~TGG~a~~ 219 (243)
T TIGR00671 175 KSTREAVQSGAVYGVLGLIQGLLKDWKKYFKRKFAVVITGGDGKY 219 (243)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCchHh
Confidence 444556666666666666666666542211111369999999876
No 224
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=27.34 E-value=74 Score=30.47 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=17.2
Q ss_pred EEEEEcCccceEEEEEECCeE
Q 006194 34 VIGIDLGTTYSCVGVYRNGRV 54 (657)
Q Consensus 34 viGIDlGTt~s~va~~~~g~~ 54 (657)
++-||+|+|++++++++++..
T Consensus 1 ~L~iDiGNT~ik~~~~~~~~~ 21 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGDKL 21 (206)
T ss_dssp EEEEEE-SSEEEEEEEETTEE
T ss_pred CEEEEECCCeEEEEEEECCEE
Confidence 478999999999999987753
No 225
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=26.79 E-value=6.3e+02 Score=26.72 Aligned_cols=96 Identities=18% Similarity=0.341 Sum_probs=48.8
Q ss_pred chhhHHHHHHHHHHH---------HhhcCCCCCCCHHHHHHHHHHHHHHHHHccCCceeEEEEeeccCCceeEEEecHHH
Q 006194 258 EDFDHRVMDYFIKLI---------KKKYNKDISKDNKAIGKLRRECERAKRALSSQHQVRVEIESLFDGVDFSEPLTRAR 328 (657)
Q Consensus 258 ~~~d~~l~~~l~~~~---------~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~l~~~~~~~~~itr~~ 328 (657)
+.+|+.|.+.+.+++ |.+.+.++....|....|....+.+++ ..+..+.
T Consensus 13 D~iD~~iv~Ll~~R~~~~~~ia~~K~~~~~~v~d~~Re~~vl~~~~~~~~~----------------------~~l~~~~ 70 (374)
T PRK11199 13 DEVDKQLLELLAKRLELVAQVGEVKSRHGLPIYVPEREAAMLASRRAEAEA----------------------LGVPPDL 70 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHh----------------------CCCCHHH
Confidence 468888888887654 444555555555544444333332221 1123334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC--CCCcceEEEecCccCcH-HHHHHHHh
Q 006194 329 FEELNMDLFKKTMGPVKKALEDAGLK--KTDIREIVLVGGSTRIP-KIQQLLKD 379 (657)
Q Consensus 329 fe~~~~~~~~~~~~~i~~~l~~~~~~--~~~i~~V~LvGG~sr~p-~v~~~l~~ 379 (657)
++.+++.+++... ..=.+.++. ...+..|.++||.+.+- .+...+.+
T Consensus 71 ~~~i~~~i~~~s~----~~q~~~~~~~~~~~~~~I~IiGG~GlmG~slA~~l~~ 120 (374)
T PRK11199 71 IEDVLRRVMRESY----SSENDKGFKTLNPDLRPVVIVGGKGQLGRLFAKMLTL 120 (374)
T ss_pred HHHHHHHHHHHHH----HHhHHhcccccCcccceEEEEcCCChhhHHHHHHHHH
Confidence 4454444444333 221222332 33567899999876664 33344444
No 226
>PRK12397 propionate kinase; Reviewed
Probab=26.76 E-value=7.5e+02 Score=26.47 Aligned_cols=42 Identities=7% Similarity=0.173 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcceEEEecCcc-CcHHHHHHHHhhc
Q 006194 336 LFKKTMGPVKKALEDAGLKKTDIREIVLVGGST-RIPKIQQLLKDFF 381 (657)
Q Consensus 336 ~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s-r~p~v~~~l~~~f 381 (657)
.+.++.+.|-..... ...+|.|+++||-+ +.+.+|+.+-+.+
T Consensus 304 f~yri~k~IGa~~a~----lggvDaiVFTGGIGEns~~vR~~ic~~L 346 (404)
T PRK12397 304 FAERIRATIGSYIMQ----MGGLDALVFTGGIGENSARARSAVCHNL 346 (404)
T ss_pred HHHHHHHHHHHHHHH----hCCCCEEEECCchhhCCHHHHHHHHhhh
Confidence 334444444444333 24599999999986 5789999988766
No 227
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=26.70 E-value=4.7e+02 Score=24.67 Aligned_cols=49 Identities=20% Similarity=0.384 Sum_probs=35.3
Q ss_pred HHHHHhhhchHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHhc
Q 006194 559 VRERVDSRNKLETYIYNMRSTINDKLADKIDSDDKERIESTLKEALEWLDD 609 (657)
Q Consensus 559 ~~~~~ea~N~LE~~iy~~r~~l~~~~~~~~~~~e~~~i~~~l~~~~~WL~~ 609 (657)
.+.....+.+||..|.+++.+++.+ +..++++|+...+..++...+|..
T Consensus 194 ~k~le~~k~~Le~~ia~~k~K~e~~--e~r~~E~r~ieEkk~~eei~fLk~ 242 (259)
T KOG4001|consen 194 WKVLEDKKKELELKIAQLKKKLETD--EIRSEEEREIEEKKMKEEIEFLKE 242 (259)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344556778999999998888653 556777787777777777777755
No 228
>PRK00846 hypothetical protein; Provisional
Probab=26.69 E-value=3.2e+02 Score=21.58 Aligned_cols=27 Identities=4% Similarity=-0.058 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 006194 617 DFDEKMKEVEAVCNPVIKQVYEKNGGS 643 (657)
Q Consensus 617 ~~~~kl~~L~~~~~~i~~r~~e~~~~~ 643 (657)
.-+..++.|+..+.-+..|+.+.+.+.
T Consensus 38 ~qq~~I~~L~~ql~~L~~rL~~~~~s~ 64 (77)
T PRK00846 38 DARLTGARNAELIRHLLEDLGKVRSTL 64 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 345566777777777777877766443
No 229
>PRK13324 pantothenate kinase; Reviewed
Probab=26.63 E-value=70 Score=31.91 Aligned_cols=20 Identities=25% Similarity=0.629 Sum_probs=17.7
Q ss_pred EEEEEcCccceEEEEEECCe
Q 006194 34 VIGIDLGTTYSCVGVYRNGR 53 (657)
Q Consensus 34 viGIDlGTt~s~va~~~~g~ 53 (657)
++.||+|+|+++.++++.++
T Consensus 2 iL~iDiGNT~ik~gl~~~~~ 21 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGDR 21 (258)
T ss_pred EEEEEeCCCceEEEEEECCE
Confidence 68999999999999998554
No 230
>PLN03173 chalcone synthase; Provisional
Probab=26.49 E-value=2.3e+02 Score=30.26 Aligned_cols=48 Identities=21% Similarity=0.295 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcceEEEecCcc-CcHHHHHHHHhhcC
Q 006194 335 DLFKKTMGPVKKALEDAGLKKTDIREIVLVGGST-RIPKIQQLLKDFFD 382 (657)
Q Consensus 335 ~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s-r~p~v~~~l~~~f~ 382 (657)
...+=..+.++++|+++++++.+|+.|+++..+. ..|.+--.|.+.++
T Consensus 101 ~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LG 149 (391)
T PLN03173 101 EVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (391)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhC
Confidence 3444456778899999999999999998876444 58999889999983
No 231
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=26.39 E-value=1.8e+02 Score=31.65 Aligned_cols=43 Identities=26% Similarity=0.416 Sum_probs=32.8
Q ss_pred EEEEecCCeeEEEEEEEeCCeE-EEEEEeCCCCCccchhhHHHH
Q 006194 223 LVYDLGGGTFDVSILTIDNGVF-EVLATSGDTHLGGEDFDHRVM 265 (657)
Q Consensus 223 lv~D~Gggt~dvsv~~~~~~~~-~v~~~~~~~~lGG~~~d~~l~ 265 (657)
+-+|+|.+++-.-++.+..+.+ ....+....--||+++|.+..
T Consensus 167 vAvDlGTS~i~aqlVDL~sgevv~t~~T~n~ql~~Ge~m~sr~~ 210 (614)
T COG3894 167 VAVDLGTSGIRAQLVDLKSGEVVATVITSNPQLPGGEVMDSRDF 210 (614)
T ss_pred eEEecccceeeeEEEeccCCcEEEeeeccCCCCCCchhhHHHHH
Confidence 5689999999999999987743 444455556679999987754
No 232
>PRK04325 hypothetical protein; Provisional
Probab=25.65 E-value=3.3e+02 Score=21.29 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCC
Q 006194 619 DEKMKEVEAVCNPVIKQVYEKNGGS 643 (657)
Q Consensus 619 ~~kl~~L~~~~~~i~~r~~e~~~~~ 643 (657)
+..++.|+..+.-+..|+.+..+++
T Consensus 36 q~~I~~L~~ql~~L~~rl~~~~~~~ 60 (74)
T PRK04325 36 QQTLDLLQAQLRLLYQQMRDANPDA 60 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4445666666666777777766443
No 233
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=25.50 E-value=1.1e+02 Score=27.33 Aligned_cols=18 Identities=17% Similarity=0.372 Sum_probs=16.6
Q ss_pred eEEEEEcCccceEEEEEE
Q 006194 33 TVIGIDLGTTYSCVGVYR 50 (657)
Q Consensus 33 ~viGIDlGTt~s~va~~~ 50 (657)
.+++||+|+-|...++++
T Consensus 2 ii~sIDiGikNlA~~iie 19 (143)
T PF04848_consen 2 IILSIDIGIKNLAYCIIE 19 (143)
T ss_pred eEEEEecCCCceeEEEEE
Confidence 589999999999999986
No 234
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=25.32 E-value=27 Score=37.65 Aligned_cols=52 Identities=25% Similarity=0.381 Sum_probs=40.4
Q ss_pred CcceEEEecCccCcHHHHHHHHhhcCC-----CC---------CCCCCCchhhhHhHHHHHHhhhc
Q 006194 357 DIREIVLVGGSTRIPKIQQLLKDFFDG-----KE---------PSKGINPDEAVAHGAAVQGGILS 408 (657)
Q Consensus 357 ~i~~V~LvGG~sr~p~v~~~l~~~f~~-----~~---------v~~~~~~~~ava~GAa~~a~~~~ 408 (657)
-.++|.+|||+...|.+...|++..-+ .+ .-+..||...+=+|||++|..-.
T Consensus 526 l~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~ 591 (618)
T KOG0797|consen 526 LFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDF 591 (618)
T ss_pred hhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHH
Confidence 358899999999999999999887621 21 12346888889999999997654
No 235
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=25.30 E-value=6.3e+02 Score=24.47 Aligned_cols=37 Identities=22% Similarity=0.401 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHHH-------HH-HHhhHHHHHHHhhhchHHHH
Q 006194 536 RLSQEEIDRMVKEAE-------EF-AEEDKKVRERVDSRNKLETY 572 (657)
Q Consensus 536 ~ls~~e~~~~~~~~~-------~~-~~~D~~~~~~~ea~N~LE~~ 572 (657)
.|+.+|+++++++.. ++ ..+|...++..+++-.|++-
T Consensus 39 ~l~nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eT 83 (230)
T PF03904_consen 39 SLENEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEET 83 (230)
T ss_pred HHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777665422 22 23344445555556566653
No 236
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=24.85 E-value=75 Score=31.47 Aligned_cols=44 Identities=16% Similarity=0.270 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCccC
Q 006194 326 RARFEELNMDLFKKTMGPVKKALEDAGLKKTDIREIVLVGGSTR 369 (657)
Q Consensus 326 r~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr 369 (657)
++..+.+...++......|+..+++.......=..++++||.++
T Consensus 181 k~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~~~~~vltGg~~~ 224 (251)
T COG1521 181 KNTVEAIQSGVVYGYVGLIEGLLKEIKEELKGGDAVVLTGGLAK 224 (251)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchH
Confidence 45567777777777777777777765432223468999999865
No 237
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=24.41 E-value=44 Score=35.99 Aligned_cols=18 Identities=33% Similarity=0.632 Sum_probs=15.4
Q ss_pred eEEEEEecCCeeEEEEEE
Q 006194 221 NILVYDLGGGTFDVSILT 238 (657)
Q Consensus 221 ~vlv~D~Gggt~dvsv~~ 238 (657)
.++++|+||-|||+-.+.
T Consensus 250 ~ll~VDIGGATTDvhSv~ 267 (463)
T TIGR01319 250 DFILIDIGGATTDVHSAA 267 (463)
T ss_pred CEEEEEcCccccchhhcc
Confidence 589999999999987664
No 238
>PLN03170 chalcone synthase; Provisional
Probab=24.38 E-value=2.3e+02 Score=30.35 Aligned_cols=51 Identities=20% Similarity=0.304 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCcc-CcHHHHHHHHhhcC
Q 006194 332 LNMDLFKKTMGPVKKALEDAGLKKTDIREIVLVGGST-RIPKIQQLLKDFFD 382 (657)
Q Consensus 332 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s-r~p~v~~~l~~~f~ 382 (657)
..+...+=..+..+++|+++++++.+|+.|+++-.+. ..|.+--.|.+.++
T Consensus 102 ~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 153 (401)
T PLN03170 102 VVVEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLG 153 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhC
Confidence 3334445556778999999999999999988766443 69999999999994
No 239
>PLN00130 succinate dehydrogenase (SDH3); Provisional
Probab=24.26 E-value=17 Score=33.20 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=17.0
Q ss_pred CeEEEEEcCccceEEEEEEC
Q 006194 32 GTVIGIDLGTTYSCVGVYRN 51 (657)
Q Consensus 32 ~~viGIDlGTt~s~va~~~~ 51 (657)
+-++|+|+||+|++++..++
T Consensus 57 ~d~~g~~~gt~n~~~~~~e~ 76 (213)
T PLN00130 57 NDILGTGLGTNNAIREEREK 76 (213)
T ss_pred cceeccCCCcchHHHHHHhc
Confidence 36899999999999887754
No 240
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=24.22 E-value=88 Score=26.81 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCcceEEEecCccCcH--HHHHHHHhhcCC
Q 006194 338 KKTMGPVKKALEDAGLKKTDIREIVLVGGSTRIP--KIQQLLKDFFDG 383 (657)
Q Consensus 338 ~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p--~v~~~l~~~f~~ 383 (657)
......++++|+++++++.+|+.|..-|-++... .=.+.|.+.|+.
T Consensus 25 ~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~ 72 (119)
T PF02801_consen 25 AALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGD 72 (119)
T ss_dssp HHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhcc
Confidence 3456678999999999999999999999887753 334467888843
No 241
>PLN03172 chalcone synthase family protein; Provisional
Probab=23.80 E-value=2.7e+02 Score=29.78 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCcc-CcHHHHHHHHhhcC
Q 006194 331 ELNMDLFKKTMGPVKKALEDAGLKKTDIREIVLVGGST-RIPKIQQLLKDFFD 382 (657)
Q Consensus 331 ~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s-r~p~v~~~l~~~f~ 382 (657)
...+...+=..+..+++|+++++++.+|+.|+++..+. ..|.+--.|.+.++
T Consensus 97 ~~~~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LG 149 (393)
T PLN03172 97 MVVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhC
Confidence 33344445556778899999999999999998766554 69999999999993
No 242
>PRK11637 AmiB activator; Provisional
Probab=23.20 E-value=6.2e+02 Score=27.28 Aligned_cols=25 Identities=4% Similarity=0.203 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 006194 615 KDDFDEKMKEVEAVCNPVIKQVYEK 639 (657)
Q Consensus 615 ~~~~~~kl~~L~~~~~~i~~r~~e~ 639 (657)
....+.++++++.........+|..
T Consensus 112 I~~~q~~l~~~~~~l~~rlra~Y~~ 136 (428)
T PRK11637 112 IAKLEQQQAAQERLLAAQLDAAFRQ 136 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555666666666666666666653
No 243
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=23.01 E-value=1.4e+02 Score=22.91 Aligned_cols=25 Identities=4% Similarity=0.118 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 006194 616 DDFDEKMKEVEAVCNPVIKQVYEKN 640 (657)
Q Consensus 616 ~~~~~kl~~L~~~~~~i~~r~~e~~ 640 (657)
-.-+..++.|+..+.-+..|+.+..
T Consensus 28 ~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 28 TEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445667778777777777777765
No 244
>PRK10404 hypothetical protein; Provisional
Probab=22.88 E-value=4.5e+02 Score=21.95 Aligned_cols=66 Identities=11% Similarity=0.231 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHH--hhHHHHHHHhhhchHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHhcC
Q 006194 540 EEIDRMVKEAEEFAE--EDKKVRERVDSRNKLETYIYNMRSTINDKLADKIDSDDKERIESTLKEALEWLDDN 610 (657)
Q Consensus 540 ~e~~~~~~~~~~~~~--~D~~~~~~~ea~N~LE~~iy~~r~~l~~~~~~~~~~~e~~~i~~~l~~~~~WL~~~ 610 (657)
.++..+...++++.. .+....+..++|..+++.+..+|..+.+ . ...-.++.+.....+.++.-+|
T Consensus 12 ~dl~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~-~----~~~~~~~~k~aa~~td~yV~e~ 79 (101)
T PRK10404 12 DDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQ-A----SDSYYYRAKQAVYRADDYVHEK 79 (101)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-h----HHHHHHHHHHHHHHHHHHHHhC
Confidence 455666666665542 2334556677888888888888887865 1 1122344566667777777665
No 245
>PF07066 DUF3882: Lactococcus phage M3 protein; InterPro: IPR009773 This family consists of several Lactococcus bacteriophage 712, middle-3 (M3) proteins of around 160 residues in length. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The function of this family is unknown.
Probab=22.54 E-value=1.1e+02 Score=27.30 Aligned_cols=24 Identities=13% Similarity=0.390 Sum_probs=19.7
Q ss_pred CCeEEEEEcCccc-----eEEEEEECCeE
Q 006194 31 LGTVIGIDLGTTY-----SCVGVYRNGRV 54 (657)
Q Consensus 31 ~~~viGIDlGTt~-----s~va~~~~g~~ 54 (657)
|..++.|||-|++ +.-|+.+.+..
T Consensus 1 ~~~~LslD~STs~~~~~gTG~A~~~~~~~ 29 (159)
T PF07066_consen 1 MKKVLSLDFSTSSKKGEGTGWAFFKGSDL 29 (159)
T ss_pred CCeeEEEEEecccCCCCCceeEEecCCeE
Confidence 4579999999998 88888876653
No 246
>PLN02914 hexokinase
Probab=22.36 E-value=2.3e+02 Score=31.25 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=22.3
Q ss_pred CcceEEEEEecCCeeEEEEEEEeCC
Q 006194 218 GEMNILVYDLGGGTFDVSILTIDNG 242 (657)
Q Consensus 218 ~~~~vlv~D~Gggt~dvsv~~~~~~ 242 (657)
+.+.++.+|+||.++-|..+++.++
T Consensus 93 E~G~fLAlDlGGTNfRV~~V~L~g~ 117 (490)
T PLN02914 93 EKGLFYALDLGGTNFRVLRVQLGGK 117 (490)
T ss_pred eeeEEEEEecCCceEEEEEEEecCC
Confidence 5678999999999999999999863
No 247
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=22.36 E-value=3e+02 Score=28.13 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=33.5
Q ss_pred cceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHHHHHHHH
Q 006194 219 EMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFI 269 (657)
Q Consensus 219 ~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~ 269 (657)
...++.+|+|+.++.++++......+..........-....+-+.|.+.+.
T Consensus 5 ~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~~~~~~~~~~~i~~~i~ 55 (314)
T COG1940 5 AMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPTPDPEEAILEAILALVA 55 (314)
T ss_pred CcEEEEEEecCCEEEEEEECCCCcEEEEEEEecCCCCchhHHHHHHHHHHH
Confidence 456889999999999999998887655444444333333344555555443
No 248
>PLN02939 transferase, transferring glycosyl groups
Probab=22.30 E-value=5.6e+02 Score=30.82 Aligned_cols=101 Identities=14% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHhhh--hhcCCCHHHHHHHHHHHHHHHHHHhcC--CCCC
Q 006194 539 QEEIDRMVKEAEEFAEEDKKVRERVDSRNKLETYIYNMRSTINDK--LADKIDSDDKERIESTLKEALEWLDDN--QNAE 614 (657)
Q Consensus 539 ~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LE~~iy~~r~~l~~~--~~~~~~~~e~~~i~~~l~~~~~WL~~~--~~a~ 614 (657)
+++++.++.++....+-|+.....++.+--|++++-++..++-.. -...+++-+.+.+.++++.++..|+.- ....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (977)
T PLN02939 239 KDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEK 318 (977)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 006194 615 KDDFDEKMKEVEAVCNPVIKQVYEK 639 (657)
Q Consensus 615 ~~~~~~kl~~L~~~~~~i~~r~~e~ 639 (657)
.-..-++-.+|++.++.+..-..|+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (977)
T PLN02939 319 AALVLDQNQDLRDKVDKLEASLKEA 343 (977)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHh
No 249
>COG3513 Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]
Probab=22.21 E-value=75 Score=36.43 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=20.2
Q ss_pred CCCCeEEEEEcCccceEEEEEECC
Q 006194 29 TKLGTVIGIDLGTTYSCVGVYRNG 52 (657)
Q Consensus 29 ~~~~~viGIDlGTt~s~va~~~~g 52 (657)
|++.+++|+|+|+.....|+..+.
T Consensus 1 ~~~~yilglDIGi~SVGWAvve~d 24 (1088)
T COG3513 1 MKKAYILGLDIGINSVGWAVVEDD 24 (1088)
T ss_pred CCcceEEEeeccccceeeEEeecc
Confidence 346799999999999999998644
No 250
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=22.04 E-value=3.4e+02 Score=27.08 Aligned_cols=46 Identities=17% Similarity=0.057 Sum_probs=32.3
Q ss_pred CcceEEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCccchhhHH
Q 006194 218 GEMNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHR 263 (657)
Q Consensus 218 ~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~ 263 (657)
+...++.+|+|..++-+.+.+.....+.+.......--.|.-+|..
T Consensus 22 ~~~~~~~iDiGSssi~~vv~~~~~~~~~~~~~~~~~vr~G~i~di~ 67 (267)
T PRK15080 22 ESPLKVGVDLGTANIVLAVLDEDGQPVAGALEWADVVRDGIVVDFI 67 (267)
T ss_pred CCCEEEEEEccCceEEEEEEcCCCCEEEEEeccccccCCCEEeeHH
Confidence 3567889999999999888876655666665555455566666633
No 251
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=21.97 E-value=69 Score=37.71 Aligned_cols=20 Identities=15% Similarity=0.421 Sum_probs=17.7
Q ss_pred eEEEEEcCccceEEEEEECC
Q 006194 33 TVIGIDLGTTYSCVGVYRNG 52 (657)
Q Consensus 33 ~viGIDlGTt~s~va~~~~g 52 (657)
++||+|+||+++..|+++.+
T Consensus 2 y~LGLDiGt~SvGWAVv~~d 21 (805)
T TIGR01865 2 YILGLDIGIASVGWAIVEDD 21 (805)
T ss_pred ceeEEeecccceeEEEEecc
Confidence 68999999999999999644
No 252
>KOG3133 consensus 40 kDa farnesylated protein associated with peroxisomes [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.81 E-value=4.5e+02 Score=26.07 Aligned_cols=62 Identities=13% Similarity=0.229 Sum_probs=34.6
Q ss_pred hchHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 006194 566 RNKLETYIYNMRSTINDKLADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAVCNPVI 633 (657)
Q Consensus 566 ~N~LE~~iy~~r~~l~~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~~i~ 633 (657)
-+.||.++..+=+.|-.. +.+ ...++++...+=.||.+|...-..+..+++.+-.+++..|.
T Consensus 141 ~g~le~~m~~iMqqllSK--EIL----yeplKEl~~~YPkwLeen~e~l~~E~~erYqkQ~~~i~~i~ 202 (267)
T KOG3133|consen 141 SGDLEPIMESIMQQLLSK--EIL----YEPLKELGANYPKWLEENGESLSKEDKERYQKQFELIKEIE 202 (267)
T ss_pred CccHHHHHHHHHHHHHHH--HHh----hhhHHHHHHHhhHHHHhcccccCHHHHHHHHHHHHHHHHHH
Confidence 367888877765555321 122 24678888889999999832222233334444444444333
No 253
>PF11458 Mistic: Membrane-integrating protein Mistic; InterPro: IPR021078 Mistic is an integral membrane protein that folds autonomously into the membrane []. It is conserved in the Bacilli bacteria. The protein forms a helical bundle with a polar lipid-facing surface. Mistic can be used for high-level production of other membrane proteins in their native conformations [].
Probab=21.63 E-value=69 Score=24.71 Aligned_cols=18 Identities=17% Similarity=0.449 Sum_probs=8.8
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 006194 588 IDSDDKERIESTLKEALE 605 (657)
Q Consensus 588 ~~~~e~~~i~~~l~~~~~ 605 (657)
++.+||+.++.+++.+.+
T Consensus 3 Vt~~EkeQLS~AID~mnE 20 (84)
T PF11458_consen 3 VTDQEKEQLSTAIDRMNE 20 (84)
T ss_pred CchHHHHHHHHHHHHHHh
Confidence 344455555555554443
No 254
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=21.47 E-value=2.1e+02 Score=28.95 Aligned_cols=43 Identities=21% Similarity=0.400 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHcCCCCCCcceEEE-ecCccCcHHHHHHHHhhc
Q 006194 339 KTMGPVKKALEDAGLKKTDIREIVL-VGGSTRIPKIQQLLKDFF 381 (657)
Q Consensus 339 ~~~~~i~~~l~~~~~~~~~i~~V~L-vGG~sr~p~v~~~l~~~f 381 (657)
-+...++++|+++++++.+|+.+++ +..++-.|.+-.+|-+.|
T Consensus 86 v~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~ 129 (290)
T PF08392_consen 86 VIFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRY 129 (290)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHh
Confidence 3466788999999999999998765 667788999999999999
No 255
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=21.30 E-value=1.9e+02 Score=30.16 Aligned_cols=49 Identities=20% Similarity=0.191 Sum_probs=34.7
Q ss_pred CCcceEEEecCccCc-HHHHHHHH---hhc--CCCCCCCCCCchhhhHhHHHHHH
Q 006194 356 TDIREIVLVGGSTRI-PKIQQLLK---DFF--DGKEPSKGINPDEAVAHGAAVQG 404 (657)
Q Consensus 356 ~~i~~V~LvGG~sr~-p~v~~~l~---~~f--~~~~v~~~~~~~~ava~GAa~~a 404 (657)
..++.|+++|...+. |..++.|. +++ +..+.....+...+.|+||.+..
T Consensus 286 ~~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~~ 340 (341)
T PF03630_consen 286 HGVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLKH 340 (341)
T ss_dssp HT--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHTH
T ss_pred cCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHhc
Confidence 457899999999875 67788888 445 23345556688899999998753
No 256
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=21.29 E-value=6.4e+02 Score=28.32 Aligned_cols=64 Identities=13% Similarity=0.275 Sum_probs=35.5
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 006194 557 KKVRERVDSRNKLETYIYNMRSTINDKLADKIDSDDKERIESTLKEALEWLDDNQNAEKDDFDEKMKEVEAV 628 (657)
Q Consensus 557 ~~~~~~~ea~N~LE~~iy~~r~~l~~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~ 628 (657)
+.++++++.+++|+++-.+++..... .-+.......++.++.-|.+. ....++++.++.+|+++
T Consensus 447 e~k~eie~L~~~l~~~~r~~~~~~~~-------~rei~~~~~~I~~L~~~L~e~-~~~ve~L~~~l~~l~k~ 510 (652)
T COG2433 447 ELKREIEKLESELERFRREVRDKVRK-------DREIRARDRRIERLEKELEEK-KKRVEELERKLAELRKM 510 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 34456666677777776666654432 123344445555555555543 22466777777777733
No 257
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=20.79 E-value=1.4e+02 Score=26.30 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=17.3
Q ss_pred EEEEEcCccceEEEEEECCe
Q 006194 34 VIGIDLGTTYSCVGVYRNGR 53 (657)
Q Consensus 34 viGIDlGTt~s~va~~~~g~ 53 (657)
+||||+|-....+++..++.
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~ 20 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNG 20 (144)
T ss_pred eEEEEcccCeEEEEEEcCCC
Confidence 58999999999999986554
No 258
>PLN03168 chalcone synthase; Provisional
Probab=20.78 E-value=2.7e+02 Score=29.63 Aligned_cols=54 Identities=22% Similarity=0.349 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEecCc-cCcHHHHHHHHhhcC
Q 006194 329 FEELNMDLFKKTMGPVKKALEDAGLKKTDIREIVLVGGS-TRIPKIQQLLKDFFD 382 (657)
Q Consensus 329 fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~-sr~p~v~~~l~~~f~ 382 (657)
.+-..+...+=..+..+++|+++++++.+|+.|+++-.+ -.+|.+--.|.+.+|
T Consensus 94 ~~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 148 (389)
T PLN03168 94 HDIVVVQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLG 148 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhC
Confidence 333444445555778899999999999999999875332 357999999999983
No 259
>PF13941 MutL: MutL protein
Probab=20.73 E-value=2.5e+02 Score=30.63 Aligned_cols=46 Identities=15% Similarity=0.235 Sum_probs=31.5
Q ss_pred EEEEEecCCeeEEEEEEEeCCeEEEEEEeCCCCCcc-chhhHHHHHH
Q 006194 222 ILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGG-EDFDHRVMDY 267 (657)
Q Consensus 222 vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG-~~~d~~l~~~ 267 (657)
+|++|||+.+|-++++....+..++++......-=. .|+..-+.+-
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTTv~~~Dv~~G~~~A 48 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTTVEPGDVTIGLNNA 48 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCCcCcccHHHHHHHH
Confidence 799999999999999997777777776553322222 3555555443
No 260
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=20.53 E-value=2.3e+02 Score=22.91 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=18.4
Q ss_pred eEEEEEecCCeeEEEEEEEeCCeE
Q 006194 221 NILVYDLGGGTFDVSILTIDNGVF 244 (657)
Q Consensus 221 ~vlv~D~Gggt~dvsv~~~~~~~~ 244 (657)
.+|.+|+||..+-++++.-.+...
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~g~~~ 25 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETGKLA 25 (99)
T ss_pred cEEEEccCCCeEEEEEECCCCCEe
Confidence 378999999999999887554433
No 261
>PRK08868 flagellar protein FlaG; Provisional
Probab=20.48 E-value=3.1e+02 Score=24.58 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=33.1
Q ss_pred eEEEEEEcCC-CcEEEEEEecCCcceeEEEEeccCCCCCHHHHHHHHHHHHHH
Q 006194 501 IEVTFEVDAN-GILHVTAEDKGAKNKQSITIINDKGRLSQEEIDRMVKEAEEF 552 (657)
Q Consensus 501 i~v~~~~d~~-g~l~v~~~~~~~~~~~~~~i~~~~~~ls~~e~~~~~~~~~~~ 552 (657)
..+.|++|.+ |.+.|.+.|..||... ..+++|++-++.+.+.++
T Consensus 89 ~~L~F~vdeetgr~VVkViD~~T~EVI--------RQIP~Ee~L~la~~l~e~ 133 (144)
T PRK08868 89 KGLSFRVDEESGRDVVTIYEASTGDII--------RQIPDEEMLEVLRRLAEQ 133 (144)
T ss_pred CceEEEEecCCCCEEEEEEECCCCcee--------eeCCCHHHHHHHHHHHHh
Confidence 5688999885 8888999999887642 347788888777666643
No 262
>PLN02854 3-ketoacyl-CoA synthase
Probab=20.44 E-value=2.5e+02 Score=31.19 Aligned_cols=53 Identities=15% Similarity=0.324 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEE-ecCccCcHHHHHHHHhhcC
Q 006194 330 EELNMDLFKKTMGPVKKALEDAGLKKTDIREIVL-VGGSTRIPKIQQLLKDFFD 382 (657)
Q Consensus 330 e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~L-vGG~sr~p~v~~~l~~~f~ 382 (657)
++..++.-.-+...+.++|+++++++.+|+.|++ +.+....|.+-..|.+.++
T Consensus 182 ~~~r~ea~~v~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LG 235 (521)
T PLN02854 182 EEARAEAEAVMFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYK 235 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhC
Confidence 3333333334556777899999999999999997 4444457999999999993
Done!