Query 006197
Match_columns 657
No_of_seqs 193 out of 2206
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 18:36:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006197.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006197hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mdb_A 2,3-dihydroxybenzoate-A 100.0 2.6E-75 8.9E-80 643.6 43.0 504 41-651 24-539 (539)
2 3g7s_A Long-chain-fatty-acid-- 100.0 3.2E-75 1.1E-79 644.7 43.8 517 32-644 9-543 (549)
3 3ni2_A 4-coumarate:COA ligase; 100.0 1.5E-74 5.1E-79 637.4 44.1 523 18-643 2-535 (536)
4 3r44_A Fatty acyl COA syntheta 100.0 1.1E-73 3.8E-78 627.4 43.4 498 39-645 13-515 (517)
5 3etc_A AMP-binding protein; ad 100.0 3.8E-73 1.3E-77 630.2 47.7 510 38-643 52-579 (580)
6 1v25_A Long-chain-fatty-acid-C 100.0 5.8E-74 2E-78 633.2 40.1 504 41-645 17-538 (541)
7 1t5h_X 4-chlorobenzoyl COA lig 100.0 1.1E-72 3.9E-77 617.9 45.8 489 41-642 1-503 (504)
8 3rix_A Luciferase, luciferin 4 100.0 1.6E-73 5.4E-78 631.3 39.0 525 32-649 10-547 (550)
9 3o83_A Peptide arylation enzym 100.0 1.6E-73 5.6E-78 629.9 38.7 500 41-643 29-540 (544)
10 2d1s_A Luciferase, luciferin 4 100.0 1.6E-72 5.3E-77 622.3 44.7 510 41-648 24-548 (548)
11 4fuq_A Malonyl COA synthetase; 100.0 7.6E-73 2.6E-77 618.6 40.4 492 46-644 4-501 (503)
12 1pg4_A Acetyl-COA synthetase; 100.0 2.7E-72 9.1E-77 632.1 43.9 524 40-648 74-626 (652)
13 3c5e_A Acyl-coenzyme A synthet 100.0 1.4E-71 4.9E-76 616.8 48.0 513 38-647 34-566 (570)
14 3ivr_A Putative long-chain-fat 100.0 2.3E-72 7.9E-77 616.6 36.4 492 40-644 4-502 (509)
15 1ry2_A Acetyl-coenzyme A synth 100.0 7.1E-72 2.4E-76 628.8 40.8 536 36-648 75-642 (663)
16 4gr5_A Non-ribosomal peptide s 100.0 1.4E-71 4.8E-76 618.0 38.5 480 37-640 70-568 (570)
17 3e7w_A D-alanine--poly(phospho 100.0 4.5E-71 1.5E-75 606.4 42.1 487 42-644 1-504 (511)
18 3fce_A D-alanine--poly(phospho 100.0 2E-71 6.7E-76 609.6 39.2 488 42-644 1-505 (512)
19 2v7b_A Benzoate-coenzyme A lig 100.0 1.5E-70 5.1E-75 605.1 45.7 503 37-639 19-528 (529)
20 3rg2_A Enterobactin synthase c 100.0 1.9E-70 6.3E-75 614.4 46.3 502 40-647 25-538 (617)
21 4dg8_A PA1221; ANL superfamily 100.0 1E-70 3.5E-75 614.0 42.3 475 40-646 25-516 (620)
22 3l8c_A D-alanine--poly(phospho 100.0 1.2E-70 4E-75 605.0 38.3 494 40-645 2-514 (521)
23 1amu_A GRSA, gramicidin synthe 100.0 2.3E-70 7.7E-75 606.3 39.8 475 40-641 37-527 (563)
24 3ipl_A 2-succinylbenzoate--COA 100.0 9.2E-71 3.2E-75 602.9 35.3 491 43-644 2-498 (501)
25 3tsy_A Fusion protein 4-coumar 100.0 1.5E-70 5.1E-75 646.7 36.4 540 16-652 39-591 (979)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 4.7E-70 1.6E-74 596.4 31.8 476 40-639 20-504 (505)
27 3ite_A SIDN siderophore synthe 100.0 8.9E-69 3.1E-73 595.4 33.0 519 39-651 17-552 (562)
28 3gqw_A Fatty acid AMP ligase; 100.0 2.7E-67 9.3E-72 586.2 44.6 515 30-651 9-571 (576)
29 3kxw_A Saframycin MX1 syntheta 100.0 1.4E-67 4.6E-72 590.0 39.4 504 39-643 8-567 (590)
30 2vsq_A Surfactin synthetase su 100.0 8.2E-66 2.8E-70 621.2 44.9 477 41-640 463-957 (1304)
31 3t5a_A Long-chain-fatty-acid-- 100.0 5.3E-56 1.8E-60 483.8 29.9 402 39-511 21-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 2.3E-49 8E-54 412.2 20.1 314 219-645 36-356 (358)
33 2y4o_A Phenylacetate-coenzyme 100.0 1E-43 3.4E-48 382.3 22.4 338 216-639 88-440 (443)
34 3qov_A Phenylacetate-coenzyme 100.0 4E-43 1.4E-47 376.8 25.1 334 216-636 81-430 (436)
35 2y27_A Phenylacetate-coenzyme 100.0 1.8E-42 6.2E-47 371.8 28.1 334 216-636 86-432 (437)
36 3hgu_A EHPF; phenazine, antibi 99.9 2.2E-27 7.6E-32 248.5 17.3 236 217-518 88-365 (369)
37 3lax_A Phenylacetate-coenzyme 99.2 2.3E-11 7.9E-16 102.2 8.4 98 510-634 1-101 (109)
38 3gxs_A Phenylacetate-coenzyme 99.1 3.4E-10 1.2E-14 94.8 8.0 99 510-635 1-102 (109)
39 4eql_A 4-substituted benzoates 98.7 5.7E-08 1.9E-12 104.3 12.5 160 378-560 295-481 (581)
40 4b2g_A GH3-1 auxin conjugating 98.6 2.2E-07 7.7E-12 99.9 12.1 87 457-560 393-493 (609)
41 4epl_A Jasmonic acid-amido syn 98.5 1.4E-06 4.6E-11 93.5 13.9 162 377-560 299-488 (581)
42 3qov_A Phenylacetate-coenzyme 91.0 1.8 6.2E-05 44.9 12.7 122 57-181 86-216 (436)
43 2y27_A Phenylacetate-coenzyme 90.2 2.1 7.1E-05 44.5 12.3 107 55-164 88-198 (437)
44 2y4o_A Phenylacetate-coenzyme 89.9 2.2 7.5E-05 44.4 12.2 105 56-164 91-200 (443)
45 3ipl_A 2-succinylbenzoate--COA 82.5 14 0.00049 38.7 13.9 120 55-180 161-283 (501)
46 3hgu_A EHPF; phenazine, antibi 79.3 8.3 0.00028 38.7 10.2 106 55-164 89-221 (369)
47 4dg8_A PA1221; ANL superfamily 73.8 18 0.00061 39.3 11.6 122 55-182 162-287 (620)
48 1mdb_A 2,3-dihydroxybenzoate-A 73.4 43 0.0015 35.4 14.3 121 55-181 180-308 (539)
49 4gs5_A Acyl-COA synthetase (AM 73.4 14 0.00048 36.9 9.9 102 55-164 35-139 (358)
50 2d1s_A Luciferase, luciferin 4 72.9 22 0.00077 37.8 11.9 120 57-180 192-318 (548)
51 3r44_A Fatty acyl COA syntheta 71.4 24 0.00081 37.3 11.6 102 56-164 169-274 (517)
52 3rg2_A Enterobactin synthase c 69.5 46 0.0016 36.0 13.6 120 56-181 183-312 (617)
53 3fce_A D-alanine--poly(phospho 69.3 21 0.00073 37.5 10.6 121 55-180 142-270 (512)
54 3ni2_A 4-coumarate:COA ligase; 68.4 28 0.00097 36.8 11.5 101 218-328 35-137 (536)
55 3kxw_A Saframycin MX1 syntheta 67.9 26 0.0009 37.5 11.2 104 55-163 165-275 (590)
56 3g7s_A Long-chain-fatty-acid-- 67.7 42 0.0014 35.6 12.7 107 218-328 32-140 (549)
57 3o83_A Peptide arylation enzym 66.7 39 0.0013 35.8 12.1 103 56-164 190-297 (544)
58 3ivr_A Putative long-chain-fat 65.5 31 0.001 36.3 10.9 98 218-327 19-118 (509)
59 3c5e_A Acyl-coenzyme A synthet 65.0 50 0.0017 35.2 12.6 121 56-181 205-332 (570)
60 3e7w_A D-alanine--poly(phospho 64.9 45 0.0015 35.0 12.1 120 56-180 142-269 (511)
61 1v25_A Long-chain-fatty-acid-C 64.6 48 0.0017 35.1 12.3 101 218-326 31-133 (541)
62 3rix_A Luciferase, luciferin 4 63.2 17 0.00059 38.7 8.5 88 238-328 49-138 (550)
63 4gr5_A Non-ribosomal peptide s 63.0 32 0.0011 36.8 10.6 121 55-181 212-336 (570)
64 1t5h_X 4-chlorobenzoyl COA lig 58.8 56 0.0019 34.2 11.4 98 218-325 15-116 (504)
65 1ry2_A Acetyl-coenzyme A synth 58.1 57 0.0019 35.6 11.7 98 218-321 95-195 (663)
66 3t5a_A Long-chain-fatty-acid-- 57.6 74 0.0025 32.8 12.1 106 218-327 37-147 (480)
67 1amu_A GRSA, gramicidin synthe 55.6 65 0.0022 34.3 11.4 95 218-324 52-148 (563)
68 1pg4_A Acetyl-COA synthetase; 54.1 60 0.0021 35.3 11.0 122 56-181 255-388 (652)
69 3etc_A AMP-binding protein; ad 52.8 60 0.0021 34.7 10.6 97 218-321 69-167 (580)
70 3tbh_A O-acetyl serine sulfhyd 50.8 58 0.002 32.1 9.2 65 93-157 62-127 (334)
71 2v7b_A Benzoate-coenzyme A lig 50.0 48 0.0017 34.9 9.2 87 238-327 47-135 (529)
72 3nyq_A Malonyl-COA ligase; A/B 49.1 96 0.0033 32.3 11.3 103 55-164 153-259 (505)
73 2vsq_A Surfactin synthetase su 48.0 43 0.0015 40.0 9.2 121 55-181 605-730 (1304)
74 4fuq_A Malonyl COA synthetase; 46.0 49 0.0017 34.6 8.4 85 239-326 28-114 (503)
75 3vc3_A Beta-cyanoalnine syntha 45.2 75 0.0026 31.4 9.1 71 87-157 72-142 (344)
76 3ite_A SIDN siderophore synthe 42.5 1.2E+02 0.004 32.1 10.9 113 68-181 184-304 (562)
77 3tsy_A Fusion protein 4-coumar 42.3 89 0.003 35.9 10.4 99 218-326 74-174 (979)
78 3l8c_A D-alanine--poly(phospho 39.3 1E+02 0.0035 32.2 9.6 81 238-321 28-110 (521)
79 3gqw_A Fatty acid AMP ligase; 33.6 1.5E+02 0.0052 31.2 10.0 86 238-326 48-142 (576)
80 3ezx_A MMCP 1, monomethylamine 33.0 2E+02 0.0068 26.0 9.2 52 267-318 93-149 (215)
81 3ist_A Glutamate racemase; str 30.0 1.6E+02 0.0053 27.9 8.2 63 46-115 19-81 (269)
82 4aec_A Cysteine synthase, mito 29.2 2E+02 0.0067 29.4 9.2 63 94-156 166-229 (430)
83 4eez_A Alcohol dehydrogenase 1 28.3 2.4E+02 0.0083 27.3 9.8 77 77-156 137-216 (348)
84 2q3b_A Cysteine synthase A; py 27.6 2.4E+02 0.0083 27.0 9.4 64 93-157 58-122 (313)
85 2egu_A Cysteine synthase; O-ac 26.6 2.6E+02 0.0088 26.7 9.4 64 93-157 56-120 (308)
86 4h1h_A LMO1638 protein; MCCF-l 25.1 1.7E+02 0.0059 28.5 7.8 60 97-156 8-86 (327)
87 1z7w_A Cysteine synthase; tran 23.7 3.1E+02 0.011 26.4 9.4 64 94-157 58-122 (322)
88 3sr3_A Microcin immunity prote 23.2 2E+02 0.0068 28.2 7.8 61 97-157 9-88 (336)
89 2pqm_A Cysteine synthase; OASS 22.8 2.6E+02 0.009 27.3 8.7 63 94-157 70-133 (343)
90 2v03_A Cysteine synthase B; py 21.6 3.7E+02 0.013 25.6 9.4 63 93-156 52-115 (303)
91 3tla_A MCCF; serine protease, 21.5 2.2E+02 0.0074 28.4 7.7 62 96-157 38-118 (371)
92 1ve1_A O-acetylserine sulfhydr 21.5 3.6E+02 0.012 25.6 9.3 64 93-157 51-117 (304)
93 4e5s_A MCCFLIKE protein (BA_56 20.5 2.2E+02 0.0077 27.7 7.5 61 97-157 8-87 (331)
94 3pc3_A CG1753, isoform A; CBS, 20.3 3.1E+02 0.01 28.7 9.1 62 94-156 105-167 (527)
95 3ijw_A Aminoglycoside N3-acety 20.1 71 0.0024 30.2 3.5 25 87-111 18-42 (268)
96 2jtq_A Phage shock protein E; 20.0 2.1E+02 0.0073 20.8 5.8 46 75-127 22-67 (85)
No 1
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=2.6e-75 Score=643.60 Aligned_cols=504 Identities=19% Similarity=0.174 Sum_probs=411.4
Q ss_pred cCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006197 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (657)
Q Consensus 41 ~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA 120 (657)
..++.++|+++++++|+++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 94 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 468999999999999999999874 2 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhh----hhhccccccccCceEEEEecCCcHHHHHHHhhCCcc
Q 006197 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (657)
Q Consensus 121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 196 (657)
|+++|++++|++|.++.+++.++++.++++++|++..... ..........+.++.++..++..
T Consensus 95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 161 (539)
T 1mdb_A 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------------- 161 (539)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT-------------
T ss_pred HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc-------------
Confidence 9999999999999999999999999999999999875321 11111111123344444433211
Q ss_pred eeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChh
Q 006197 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (657)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 276 (657)
.+.++.... ..........++++++++|||||||.||+|++||+++.+.+......+ ++.++|++++.+|++
T Consensus 162 --~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 233 (539)
T 1mdb_A 162 --EFLPLEDLH-TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMA 233 (539)
T ss_dssp --TSEEGGGCC-CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred --chhhhhhcc-ccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCCEEEEeeccc
Confidence 011111111 111122345678999999999999999999999999999988877666 789999999999999
Q ss_pred HHHHHHH--HHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHh
Q 006197 277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWM 353 (657)
Q Consensus 277 ~~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (657)
|.+++.. .+.++..|+++++.+. ++..+++.|+++++|+++++|+++..|.+.....
T Consensus 234 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------- 293 (539)
T 1mdb_A 234 HNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR-------------------- 293 (539)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC--------------------
T ss_pred ccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcccc--------------------
Confidence 9999874 6778999999999876 8999999999999999999999999987643210
Q ss_pred hcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccC
Q 006197 354 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVG 433 (657)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~ 433 (657)
...+++||.+++||+++++++.+++.+.+|+++++.||+||++..++..........+
T Consensus 294 ----------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~ 351 (539)
T 1mdb_A 294 ----------------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVN 351 (539)
T ss_dssp ----------------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHH
T ss_pred ----------------------CCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHhcCC
Confidence 0112589999999999999999999998899999999999965433322221223347
Q ss_pred ccCcCccC-eeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCceEEEcCCCcEEEEec
Q 006197 434 TAGPVSVY-SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDR 511 (657)
Q Consensus 434 ~~G~~~~~-~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~i~GR 511 (657)
++|+|+++ .+++|+| +++. +++.|+.|||+|+||+++.||+++++.|.+.| .+|||+|||+|++|+||+++++||
T Consensus 352 ~~G~p~~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR 428 (539)
T 1mdb_A 352 TQGKPMSPYDESRVWD-DHDR--DVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGR 428 (539)
T ss_dssp CCCEESSTTCEEEEEC-TTSC--BCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEE
T ss_pred CCCcccCCCceEEEEC-CCCC--CCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEecc
Confidence 89999975 5899998 6554 55567899999999999999999999999999 699999999999999999999999
Q ss_pred CcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHH
Q 006197 512 KKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQN 588 (657)
Q Consensus 512 ~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (657)
.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.... . .
T Consensus 429 ~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~---------~--------~------ 484 (539)
T 1mdb_A 429 AKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEA---------P--------K------ 484 (539)
T ss_dssp GGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSC---------C--------C------
T ss_pred ccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCCC---------C--------C------
Confidence 9999996 8999999999999999999999999987644 4788998876421 0 1
Q ss_pred HHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHhh
Q 006197 589 YILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK 651 (657)
Q Consensus 589 ~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i~~ly~~ 651 (657)
.++|++++++..||.|++|+.|+++++ +|+|++||++|++|+++|.+.|+++|++
T Consensus 485 --~~~l~~~l~~~~L~~~~~P~~i~~v~~------lP~t~~GKi~r~~L~~~~~~~i~~~y~~ 539 (539)
T 1mdb_A 485 --AAELKAFLRERGLAAYKIPDRVEFVES------FPQTGVGKVSKKALREAISEKLLAGFKK 539 (539)
T ss_dssp --HHHHHHHHHHTTCCGGGSCSEEEECSS------CCBCTTSCBCHHHHHHHHHHHHHTC---
T ss_pred --HHHHHHHHHhCCCCcccCCCEEEEecc------CCCCCCcCEeHHHHHHHHHHHHhccccC
Confidence 133445554334999999999999765 4999999999999999999999999974
No 2
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=3.2e-75 Score=644.67 Aligned_cols=517 Identities=20% Similarity=0.227 Sum_probs=395.1
Q ss_pred CCCCCCCCCcCcHHHHHHHHHHcCCCCCceeeecccCC--CCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeC
Q 006197 32 NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG--KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA 109 (657)
Q Consensus 32 ~~~~~~~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~--~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~ 109 (657)
.++|+.+....++.++|+++++++||++|+++. ++ ..+.++++||+||.++++++|++|++.|+++||+|+++++
T Consensus 9 ~~~p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~ 85 (549)
T 3g7s_A 9 IGFPSLYYPKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIP 85 (549)
T ss_dssp CCCCCCCCCCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred cCCCCCCcCCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECC
Confidence 446777777889999999999999999999987 42 2334578999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHH
Q 006197 110 NCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM 189 (657)
Q Consensus 110 n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 189 (657)
|++++++++|||+++|++++|++|.++.+++.++++.++++++|++....+.+...... .....++..+..
T Consensus 86 ~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~------- 156 (549)
T 3g7s_A 86 NSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEK--TGVERVFVVGGE------- 156 (549)
T ss_dssp SSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTT--SCCCEEEEETCS-------
T ss_pred CCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhh--CCCcEEEEeCCC-------
Confidence 99999999999999999999999999999999999999999999998877655443322 224455555432
Q ss_pred HhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEE
Q 006197 190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY 269 (657)
Q Consensus 190 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~ 269 (657)
..++.++...............++++++|+|||||||.||+|++||+++.+.+..+...+ ++.++|++
T Consensus 157 -------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~ 224 (549)
T 3g7s_A 157 -------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-----GLSHMDTI 224 (549)
T ss_dssp -------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-----CCCTTCEE
T ss_pred -------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-----CCCCCCEE
Confidence 224555555442222222222348999999999999999999999999999998887777 78999999
Q ss_pred EEecChhHHHHHHHHHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 006197 270 LSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL 348 (657)
Q Consensus 270 l~~~pl~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 348 (657)
++.+|++|.+++...+.++..|+++++.+. ++..+++.|+++++|+++++|+++..|.+........
T Consensus 225 ~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~------------ 292 (549)
T 3g7s_A 225 VGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKT------------ 292 (549)
T ss_dssp ECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCC------------
T ss_pred EEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhccc------------
Confidence 999999999998887778999999998876 9999999999999999999999999987653321100
Q ss_pred HHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHh----cC---CceeeeccCCCCCCcc
Q 006197 349 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT----CC---AFLVQGYGLTETCGPT 421 (657)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~----~~---~~v~~~yG~tE~~~~~ 421 (657)
..++++|.+++||+++++++.+.+.+. ++ +.+++.||+||+++.+
T Consensus 293 ----------------------------~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~ 344 (549)
T 3g7s_A 293 ----------------------------YDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMV 344 (549)
T ss_dssp ----------------------------CCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEE
T ss_pred ----------------------------CCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhh
Confidence 011489999999999999999999887 56 8899999999999888
Q ss_pred ccccCCCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc---cCC--ccccCc
Q 006197 422 TVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI---IDG--WFHTGD 496 (657)
Q Consensus 422 ~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~---~~g--~~~TGD 496 (657)
+..........+++|.|+++++++|+|.+++ .+++.|+.|||+|+||+++.|||++++.+.+.| .+| ||+|||
T Consensus 345 ~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGD 422 (549)
T 3g7s_A 345 TTNPPLRLDKSTTQGVPMSDIELKVISLEDG--RELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGD 422 (549)
T ss_dssp EECCGGGGGGTTSCCEECTTCEEEEECSSSC--CEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEE
T ss_pred hcCCccccCcCCCccccCCCCEEEEEeCCCC--cCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCc
Confidence 7766555455689999999999999983333 455677899999999999999999999999998 678 999999
Q ss_pred eEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCC
Q 006197 497 IGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGH 573 (657)
Q Consensus 497 l~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~ 573 (657)
+|++|+||+++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.++.. .
T Consensus 423 l~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~--------~ 493 (549)
T 3g7s_A 423 VGFIDEEGFLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYR--------G 493 (549)
T ss_dssp EEEECTTSCEEEEEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTT--------T
T ss_pred EEEEcCCceEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCcc--------C
Confidence 9999999999999999999997 8999999999999999999999999997654 47889999876520 0
Q ss_pred CccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006197 574 AGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 644 (657)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~ 644 (657)
.. . .++|+++++ ++||.|++|+.|+++++. |+|++|||+|++|++++.+.
T Consensus 494 ~~------~--------~~~l~~~l~-~~L~~~~~P~~i~~v~~l------P~t~~GKi~R~~L~~~~~~~ 543 (549)
T 3g7s_A 494 KV------D--------EEDIIEWVR-ERISGYKRVREVEFVEEL------PRTASGKLLRRLLREKEAEG 543 (549)
T ss_dssp SC------C--------HHHHHHHHH-TTCC-----CCCCEEEEC------C-------------------
T ss_pred cC------C--------HHHHHHHHH-HhccCcccceEEEEeccC------CCCCCcCEeHHHHHHHhhcc
Confidence 00 1 133444444 789999999999998764 99999999999999988653
No 3
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=1.5e-74 Score=637.44 Aligned_cols=523 Identities=25% Similarity=0.314 Sum_probs=422.4
Q ss_pred CCCCCCceeccccCCCCCCCCCCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcC
Q 006197 18 KPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASG 97 (657)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G 97 (657)
+|.+..+|++.......| ...++.++|.++++++|+++|+++. ++. +++||+||.++++++|++|++.|
T Consensus 2 ~~~~~~i~~~~~~~~~~p----~~~~l~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~G 70 (536)
T 3ni2_A 2 NPQEEFIFRSKLPDIYIP----KNLPLHSYVLENLSNHSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIG 70 (536)
T ss_dssp ---CCCCBCCSSCCCCCC----SSCCHHHHHTTTGGGSTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTT
T ss_pred CcccceEEecCCCCCCCC----CCCcHHHHHHHHhhcCCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcC
Confidence 356667777765544444 3478999999999999999999875 322 68999999999999999999999
Q ss_pred CCCCCEEEEEeCCchhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEE
Q 006197 98 AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMV 177 (657)
Q Consensus 98 ~~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~ 177 (657)
+++||+|+++++|++++++++|||+++|++++|++|.++.+++.++++.++++++|++....+.+....... .. .++
T Consensus 71 v~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~~~ 147 (536)
T 3ni2_A 71 IQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES--DV-KVM 147 (536)
T ss_dssp CCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH--TC-EEE
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc--Cc-eEE
Confidence 999999999999999999999999999999999999999999999999999999999988766554432211 22 344
Q ss_pred EecCCcHHHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcc
Q 006197 178 CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257 (657)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~ 257 (657)
.++... .....+.++..... ...+.....++++++|+|||||||.||+|++||+++++.+........
T Consensus 148 ~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~ 215 (536)
T 3ni2_A 148 CVDSAP-----------DGCLHFSELTQADE-NEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDN 215 (536)
T ss_dssp ESSCCC-----------TTCEETHHHHTSCG-GGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSS
T ss_pred EecCCC-----------CCccCHHHHhhccc-cccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhcc
Confidence 443321 12345566654432 222334567899999999999999999999999999988766433211
Q ss_pred cccCCCCCCcEEEEecChhHHHHHHH-HHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHH
Q 006197 258 QFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALE 335 (657)
Q Consensus 258 ~~~~~~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~ 335 (657)
....+.++|++++.+|++|.+++.. .+.++..|+++++.+. ++..+++.++++++|++.++|+++..+.+...
T Consensus 216 -~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---- 290 (536)
T 3ni2_A 216 -PNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD---- 290 (536)
T ss_dssp -CSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSC----
T ss_pred -ccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcc----
Confidence 0125789999999999999999865 5678999999999876 89999999999999999999999988764210
Q ss_pred hhchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccC
Q 006197 336 ELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGL 414 (657)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~ 414 (657)
.+. ..+++||.+++||+++++++.+.+++.+ ++++++.||+
T Consensus 291 ------------------------------~~~--------~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~ 332 (536)
T 3ni2_A 291 ------------------------------LDK--------HDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGM 332 (536)
T ss_dssp ------------------------------GGG--------SCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEEC
T ss_pred ------------------------------ccc--------CCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccc
Confidence 111 1125899999999999999999999988 8999999999
Q ss_pred CCCCCcccccc----CCCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cC
Q 006197 415 TETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID 489 (657)
Q Consensus 415 tE~~~~~~~~~----~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~ 489 (657)
||++.+++.+. .......+++|.|+++++++|+| ++++ .+++.|+.|||+|+||+++.||+++++.|.+.| .+
T Consensus 333 TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~ 410 (536)
T 3ni2_A 333 TEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVD-PETG-ASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKE 410 (536)
T ss_dssp GGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTT
T ss_pred cccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEe-CCCC-cCCCCCCccEEEEeCcccchhhcCChhHHHhhccCC
Confidence 99998765542 12233458999999999999998 4433 456677899999999999999999999999999 79
Q ss_pred CccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHH
Q 006197 490 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKK 566 (657)
Q Consensus 490 g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~ 566 (657)
|||+|||+|++|+||+++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|+..++.
T Consensus 411 g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~--- 486 (536)
T 3ni2_A 411 GWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKS--- 486 (536)
T ss_dssp SCEEEEEEEEECTTSCEEEEEECSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC---
T ss_pred CceEcccEEEEcCCceEEEEecccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCC---
Confidence 99999999999999999999999999998 7999999999999999999999999986543 4788999887642
Q ss_pred HHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006197 567 WAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV 643 (657)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~ 643 (657)
.. . .++|+++++ ++||.|++|+.|+++++. |+|++|||+|++|+++|++
T Consensus 487 -----~~--------~--------~~~l~~~l~-~~l~~~~~p~~i~~v~~l------P~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 487 -----QA--------T--------EDEIKQYIS-KQVIFYKRIKRVFFIEAI------PKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp -----CC--------C--------HHHHHHHHH-TTSCGGGCCSEEEECSCC------CBCTTSCBCHHHHHTC---
T ss_pred -----CC--------C--------HHHHHHHHH-HhccCCccccEEEEEecC------CCCCCCCeeHHHHHHHhcc
Confidence 00 1 123444454 789999999999997654 9999999999999998764
No 4
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1.1e-73 Score=627.36 Aligned_cols=498 Identities=23% Similarity=0.304 Sum_probs=406.8
Q ss_pred CCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006197 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (657)
Q Consensus 39 ~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~ 118 (657)
+...++.++|+++++++|+++|+++. +.. +++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 13 ~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~ 85 (517)
T 3r44_A 13 DKMKNIGWMLRQRATVSPRLQAYVEP---STD----VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLF 85 (517)
T ss_dssp GGGGCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred ccccCHHHHHHHHHHhCCCCeEEEeC---CcC----ceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHH
Confidence 56789999999999999999999975 322 58999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCccee
Q 006197 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (657)
Q Consensus 119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 198 (657)
|||+++|++++|+++.++.+++.++++.++++++|++......+....... .....++..... .
T Consensus 86 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------------~ 149 (517)
T 3r44_A 86 YGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA-DPPGTVTDWIGA---------------D 149 (517)
T ss_dssp HHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSS-SCCTTCCEEEEH---------------H
T ss_pred HHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhcc-CCccEEEEccCc---------------c
Confidence 999999999999999999999999999999999999987765543321111 111111111100 1
Q ss_pred eHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHH
Q 006197 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (657)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~ 278 (657)
.+.+.+... ....+.....++++++|+|||||||.||+|++||+++.+.+......+ ++.++|++++.+|++|.
T Consensus 150 ~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~ 223 (517)
T 3r44_A 150 SLAERLRSA-AADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-----DVRYRDRLLLPLPMFHV 223 (517)
T ss_dssp HHHHHHHHC-CCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-----CCCTTCEEEECSCTTSH
T ss_pred cHHHHhhcc-CcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-----CCCCCCEEEEeCchHHH
Confidence 233333322 122233455789999999999999999999999999999998877776 78999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCC
Q 006197 279 LDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGY 357 (657)
Q Consensus 279 ~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (657)
+++...+.++..|+++++.+. ++..+++.+.++++|++.++|+++..|.+....
T Consensus 224 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------------- 278 (517)
T 3r44_A 224 AALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEF------------------------- 278 (517)
T ss_dssp HHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHH-------------------------
T ss_pred HHHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc-------------------------
Confidence 999876666669999998876 999999999999999999999999988653221
Q ss_pred CCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCC-ccccCccC
Q 006197 358 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAG 436 (657)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~-~~~~~~~G 436 (657)
....+++||.+++||+++++++.+.+.+. ++++++.||+||+++.++...... ....+++|
T Consensus 279 -----------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G 340 (517)
T 3r44_A 279 -----------------AELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAGSAG 340 (517)
T ss_dssp -----------------HHCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCB
T ss_pred -----------------ccCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCCCCC
Confidence 11123589999999999999999999887 999999999999998776654433 34458999
Q ss_pred cCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCCcEEEEecCccee
Q 006197 437 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLI 516 (657)
Q Consensus 437 ~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR~~d~i 516 (657)
+|++++++++++ +++... +.+ .|||+|+||+++.||+++++.|.+.|.+|||+|||+|++|+||+++++||.||+|
T Consensus 341 ~~~~~~~~~i~d-~~~~~~--~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~dd~i 416 (517)
T 3r44_A 341 RATMFTDVAVRG-DDGVIR--EHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMI 416 (517)
T ss_dssp EECTTEEEEEEC-TTSCEE--SSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEECGGGCE
T ss_pred cCCCCeEEEEEC-CCCCCC--CCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEecCCcCEE
Confidence 999999999998 665433 334 7999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHH
Q 006197 517 KISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE 593 (657)
Q Consensus 517 ~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (657)
|+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++++|+..... . .. ++
T Consensus 417 k~-~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~---------~--------~~--------~~ 470 (517)
T 3r44_A 417 IS-GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNE---------V--------SE--------QQ 470 (517)
T ss_dssp EE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTT---------C--------CH--------HH
T ss_pred EE-CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCCCC---------C--------CH--------HH
Confidence 97 8999999999999999999999999986544 3566666433221 0 11 23
Q ss_pred HHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006197 594 LKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI 645 (657)
Q Consensus 594 l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i 645 (657)
|+++++ ++||.|++|+.|+++++ +|+|++|||+|++|+++|.+.+
T Consensus 471 l~~~l~-~~L~~~~~P~~i~~v~~------lP~t~~GKi~R~~L~~~~~~~~ 515 (517)
T 3r44_A 471 IVEYCG-TRLARYKLPKKVIFAEA------IPRNPTGKILKTVLREQYSATV 515 (517)
T ss_dssp HHHHHH-HHSCGGGSCSEEEECSC------CCBCTTCCBCHHHHHHHHGGGC
T ss_pred HHHHHH-HhCCCCCCCCEEEEECC------CCCCCCcCccHHHHHHHHHhhc
Confidence 444443 57999999999999765 4999999999999999997654
No 5
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=3.8e-73 Score=630.22 Aligned_cols=510 Identities=17% Similarity=0.154 Sum_probs=399.3
Q ss_pred CCCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 006197 38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA 117 (657)
Q Consensus 38 ~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~ 117 (657)
|..++.+.++|+.+|+++||++|+++. +. .+..+++||+||.++++++|++|+++|+++||+|+++++|+++++++
T Consensus 52 ~~~~n~~~~~l~~~a~~~pd~~Al~~~---~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~ 127 (580)
T 3etc_A 52 PENFNFAYDVVDVYARDSPEKLAMIWC---DD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYC 127 (580)
T ss_dssp CSSCCHHHHTHHHHHHHCTTCEEEEEE---ES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHH
T ss_pred cccchHHHHHHHHHHhhCCCCEEEEEE---cC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHH
Confidence 456777779999999999999999986 33 23458999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhh--hhhhccccccccCc-eEEEEecCCcHHHHHHHhhCC
Q 006197 118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV--KELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQTG 194 (657)
Q Consensus 118 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~ 194 (657)
+|||+++|++++|+++.++.+++.++++.++++++|++.+.. ..+.+... ..+.. ..++.++... .
T Consensus 128 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~ 196 (580)
T 3etc_A 128 MLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHA-ECGDIPLKKAKVGGDV----------L 196 (580)
T ss_dssp HHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHH-HHCSCCCEEEEESSSC----------C
T ss_pred HHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhh-hCCCcceEEEEeCCcc----------c
Confidence 999999999999999999999999999999999999987653 33222111 11222 3444444321 1
Q ss_pred cceeeHHHHHhcCccCCccC---CCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEE
Q 006197 195 IKPYSWDEFLHLGKVNEMEI---LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271 (657)
Q Consensus 195 ~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~ 271 (657)
....++.+.+.......... ....++|+++|+|||||||.||+|.++|.+++..+......+ ++.+++++++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 271 (580)
T 3etc_A 197 EGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-----NVEDDGLHYT 271 (580)
T ss_dssp TTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-----CCCTTCEEEE
T ss_pred cccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-----CCCCCceEEE
Confidence 12446666665443222111 245789999999999999999999999999888776644444 7889999999
Q ss_pred ecChhHHHHHHH-HHHHHhcCcEEEEec---CChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 006197 272 FLPLAHILDRVI-EEYFFRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA 347 (657)
Q Consensus 272 ~~pl~~~~g~~~-~~~~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (657)
..|+.|..+... .+.++..|+++++.+ .++..+++.|+++++|+++++|+++..|.+..
T Consensus 272 ~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~----------------- 334 (580)
T 3etc_A 272 VADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED----------------- 334 (580)
T ss_dssp CCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-----------------
T ss_pred eCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-----------------
Confidence 999999887765 567799999998874 28999999999999999999999998876420
Q ss_pred HHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCC
Q 006197 348 LKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD 427 (657)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~ 427 (657)
.. ...+++||.+++||+++++++.++|.+.+|+++++.||+||++..++..+..
T Consensus 335 ------------------~~--------~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~ 388 (580)
T 3etc_A 335 ------------------LS--------HYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWM 388 (580)
T ss_dssp ------------------C-----------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTS
T ss_pred ------------------cc--------cCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCCCC
Confidence 00 1122589999999999999999999998899999999999998776655433
Q ss_pred CccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEcc-----CCcccccCCCchhhhccccCCccccCceEEEcC
Q 006197 428 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG-----KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP 502 (657)
Q Consensus 428 ~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g-----~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~ 502 (657)
....+++|+|+++++++|+| +++. +++.|+.|||+|+| +.++.||+++++.|.+.|.+|||+|||+|++|+
T Consensus 389 -~~~~~~~G~p~~~~~v~ivd-~~g~--~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~d~ 464 (580)
T 3etc_A 389 -EPKPGSIGKPTPGYKIELMD-RDGR--LCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDE 464 (580)
T ss_dssp -CCCTTCCBEECTTCEEEEEC-TTSC--BCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEECT
T ss_pred -CCCCCccccCCCCCEEEEEC-CCCC--CCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEECC
Confidence 34458999999999999999 6655 45567899999997 789999999999999999999999999999999
Q ss_pred CCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHH
Q 006197 503 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLE 579 (657)
Q Consensus 503 ~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 579 (657)
||+++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.++..
T Consensus 465 dG~l~~~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~--------------- 528 (580)
T 3etc_A 465 DGYLWFVGRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYT--------------- 528 (580)
T ss_dssp TSCEEEEEESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC---------------
T ss_pred CCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCC---------------
Confidence 9999999999999998 6999999999999999999999999987654 47889999887530
Q ss_pred HhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006197 580 LCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV 643 (657)
Q Consensus 580 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~ 643 (657)
....+ .++|+++++ +.||.|++|+.|+++++. |+|++|||+|++|++++.+
T Consensus 529 --~~~~~----~~~l~~~l~-~~l~~~~~P~~i~~v~~l------P~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 529 --PSDSL----KNELQDHVK-NVTAPYKYPRIIEFVPEL------PKTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp --CCHHH----HHHHHHHHH-HHSCGGGCCSEEEEECC--------------------------
T ss_pred --CCHHH----HHHHHHHHH-hhCCCccCCeEEEEeCCC------CCCCCcCCcHHHHHhHhhc
Confidence 11222 344555554 579999999999997664 9999999999999998865
No 6
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=5.8e-74 Score=633.15 Aligned_cols=504 Identities=24% Similarity=0.289 Sum_probs=385.0
Q ss_pred cCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006197 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (657)
Q Consensus 41 ~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA 120 (657)
..++.++|+++++++|+++|+++. ++ +..+++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 91 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA 91 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 358999999999999999999864 21 2237899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeH
Q 006197 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (657)
Q Consensus 121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 200 (657)
|+++|++++|+++.++.+++.++|+.++++++|++.+....+.... ...+..+.++.++.... .....+
T Consensus 92 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~~ 160 (541)
T 1v25_A 92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIR-GELKTVQHFVVMDEKAP----------EGYLAY 160 (541)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHG-GGCSSCCEEEESSSCCC----------TTCEEH
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHH-hhCCCccEEEEecCCCC----------cccccH
Confidence 9999999999999999999999999999999999988765543322 12234455666554221 012355
Q ss_pred HHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhh--hhhcccccCCCCCCcEEEEecChhHH
Q 006197 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV--DLFLDQFEDKMTVDDVYLSFLPLAHI 278 (657)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~--~~~~~~~~~~~~~~d~~l~~~pl~~~ 278 (657)
.+++..... .....++++++|+|||||||.||+|++||+++....... ...+ ++.++|++++.+|++|.
T Consensus 161 ~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~ 231 (541)
T 1v25_A 161 EEALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-----ALSEKDVVLPVVPMFHV 231 (541)
T ss_dssp HHHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-----CCCTTCEEEECSCTTSH
T ss_pred HHHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-----cCCCCCEEEEeccchhh
Confidence 555433211 134567899999999999999999999999998776542 2223 67899999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcC
Q 006197 279 LDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMG 356 (657)
Q Consensus 279 ~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (657)
+++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..|.+......
T Consensus 232 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------- 289 (541)
T 1v25_A 232 NAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG---------------------- 289 (541)
T ss_dssp HHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT----------------------
T ss_pred hHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccC----------------------
Confidence 998777788999999999864 89999999999999999999999999876543210
Q ss_pred CCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCC--------
Q 006197 357 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-------- 428 (657)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~-------- 428 (657)
..+++||.+++||+++++++.+++ +.+|+++++.||+||++..++......
T Consensus 290 --------------------~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~ 348 (541)
T 1v25_A 290 --------------------HRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEE 348 (541)
T ss_dssp --------------------CCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHH
T ss_pred --------------------CcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccccCcc
Confidence 112489999999999999999999 567999999999999998776654331
Q ss_pred --ccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCceEEEcCCCc
Q 006197 429 --MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGV 505 (657)
Q Consensus 429 --~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~ 505 (657)
....+++|+|+++++++|+| +++..++.+.++.|||+|+||+++.||+++++.|.+.| .+|||+|||+|++|++|+
T Consensus 349 ~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~ 427 (541)
T 1v25_A 349 EKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGY 427 (541)
T ss_dssp HHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCC
T ss_pred ccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCce
Confidence 12347999999999999999 77765555445789999999999999999999999999 499999999999999999
Q ss_pred EEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhc
Q 006197 506 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCS 582 (657)
Q Consensus 506 l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (657)
++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.... . .
T Consensus 428 l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~---------~--------~ 489 (541)
T 1v25_A 428 VEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEK---------P--------T 489 (541)
T ss_dssp EEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-------------------------
T ss_pred EEEeecccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCCC---------C--------C
Confidence 9999999999996 8999999999999999999999999997654 4788888876211 0 0
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006197 583 LVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI 645 (657)
Q Consensus 583 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i 645 (657)
.+++++++++.+||.|++|+.|+++++ +|+|++||++|++|+++|++.+
T Consensus 490 --------~~~l~~~~~~~~L~~~~~P~~i~~v~~------lP~t~~GKi~r~~L~~~~~~~~ 538 (541)
T 1v25_A 490 --------PEELNEHLLKAGFAKWQLPDAYVFAEE------IPRTSAGKFLKRALREQYKNYY 538 (541)
T ss_dssp -------------------CCCTTTSCSBC--------------------CCTTHHHHSTTSS
T ss_pred --------HHHHHHHHHhccCccccCCcEEEEeCC------CCCCCccCeeHHHHHHHHHHhh
Confidence 123334444238999999999998765 4999999999999999876543
No 7
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=1.1e-72 Score=617.93 Aligned_cols=489 Identities=21% Similarity=0.250 Sum_probs=397.2
Q ss_pred cCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006197 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (657)
Q Consensus 41 ~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA 120 (657)
++++.++|+++++++||++|+.+. ++. +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 73 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 468999999999999999999874 322 7899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEeccCCCChhHHHHHHhccCceEEEE--cchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCccee
Q 006197 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV--QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (657)
Q Consensus 121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 198 (657)
|+++|++++|+++.++.+++.++++.++++++|+ +....+.+.... ...+ ++.
T Consensus 74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~----~~~~-~~~-------------------- 128 (504)
T 1t5h_X 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG----SGAR-IIF-------------------- 128 (504)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC----CCCE-EEE--------------------
T ss_pred HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc----ccce-eEE--------------------
Confidence 9999999999999999999999999999999999 665544331111 1111 221
Q ss_pred eHHHHHhcCc----cCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCC--CCCcEEEEe
Q 006197 199 SWDEFLHLGK----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSF 272 (657)
Q Consensus 199 ~~~~l~~~~~----~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~--~~~d~~l~~ 272 (657)
+.++..... ..........++++++|+|||||||.||+|++||+++.+.+..+...+ ++ .++|++++.
T Consensus 129 -~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~l~~ 202 (504)
T 1t5h_X 129 -LGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGL 202 (504)
T ss_dssp -GGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----CCCSSTTCEEEEC
T ss_pred -ecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----CCCCCCCceEEee
Confidence 122211110 111111345678999999999999999999999999998887766555 56 789999999
Q ss_pred cChhHHHHHH-HHHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 006197 273 LPLAHILDRV-IEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKL 350 (657)
Q Consensus 273 ~pl~~~~g~~-~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (657)
+|++|.+++. ..+.++..|+++++.+. ++..+++.|+++++|+++++|+++..|.+......
T Consensus 203 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------- 266 (504)
T 1t5h_X 203 MPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG---------------- 266 (504)
T ss_dssp SCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT----------------
T ss_pred cchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc----------------
Confidence 9999999985 46778999999999876 89999999999999999999999999875321000
Q ss_pred HHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCcc
Q 006197 351 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 430 (657)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~ 430 (657)
+ ...+++||.+++||+++++++.+.+.+.++..+++.||+||++. +.... ..
T Consensus 267 ----------------~--------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~-~~~~~---~~ 318 (504)
T 1t5h_X 267 ----------------S--------SLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMN-SLYMR---QP 318 (504)
T ss_dssp ----------------C--------CCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEE-EEEEE---SC
T ss_pred ----------------c--------cccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccccc-ccccc---CC
Confidence 0 00124899999999999999999999999999999999999933 22221 22
Q ss_pred ccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEc-cCCcccccCCCchhhhccccCCccccCceEEEcCCCcEEEE
Q 006197 431 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR-GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKII 509 (657)
Q Consensus 431 ~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~-g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~ 509 (657)
..+++|.|.+++++++++.+++...+++.|+.|||+|+ |++++.||+++++.|.+.|.+|||+|||+|++|+||+++++
T Consensus 319 ~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~l~~~ 398 (504)
T 1t5h_X 319 KTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRIL 398 (504)
T ss_dssp SSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEE
T ss_pred CCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCCceEEEe
Confidence 34789999999999999833322356667889999999 99999999999999999999999999999999999999999
Q ss_pred ecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHH
Q 006197 510 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL 586 (657)
Q Consensus 510 GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (657)
||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.++. .. .
T Consensus 399 GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~--------~~--------~---- 457 (504)
T 1t5h_X 399 GRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGE--------TL--------S---- 457 (504)
T ss_dssp EEGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTC--------CC--------C----
T ss_pred CcccCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCc--------Cc--------C----
Confidence 999999997 8999999999999999999999999997654 4799999987642 00 1
Q ss_pred HHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006197 587 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ 642 (657)
Q Consensus 587 ~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~ 642 (657)
.++|++++++++||.|++|+.|+++++. |+|++|||+|++|+++|+
T Consensus 458 ----~~~l~~~~~~~~L~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 458 ----ADALDTFCRSSELADFKRPKRYFILDQL------PKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp ----HHHHHHHHHTSSCCGGGSCSEEEECSCC------CBCTTSCBCHHHHHHHHC
T ss_pred ----HHHHHHHHhhccCcccccceEEEEhhhC------CCCCCCCEeHHHHHHHhc
Confidence 1344555542389999999999997654 999999999999998874
No 8
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=1.6e-73 Score=631.29 Aligned_cols=525 Identities=24% Similarity=0.257 Sum_probs=335.5
Q ss_pred CCCCCCCCCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc
Q 006197 32 NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC 111 (657)
Q Consensus 32 ~~~~~~~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~ 111 (657)
++.|..+....|+.++|.++++++|+++|++... ++..+ +++||+||.++++++|++|++.|+++||+|+++++|+
T Consensus 10 ~~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~ 85 (550)
T 3rix_A 10 GPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFT--DAHIE--VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENS 85 (550)
T ss_dssp CCCCSSCCCCSCHHHHHHHHHHHHHTSTTCEEEE--ETTTC--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSC
T ss_pred CCCCCCCcccCCHHHHHHHHHHhCCCCceEEEee--ecCCC--cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCc
Confidence 4456667778899999999999999999986220 22111 6899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHh
Q 006197 112 PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191 (657)
Q Consensus 112 ~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 191 (657)
+++++++|||+++|++++|+++.++.+++.++++.++++++|++.+....+..... ..+....++.++....
T Consensus 86 ~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------- 157 (550)
T 3rix_A 86 LQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQK-KLPIIQKIIIMDSKTD------- 157 (550)
T ss_dssp TTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHH-HCTTCCEEEETTCSSC-------
T ss_pred ccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHh-hCCCcceEEEEcCCcc-------
Confidence 99999999999999999999999999999999999999999999987766544322 2344556666554321
Q ss_pred hCCcceeeHHHHHhcCccC------CccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCC
Q 006197 192 QTGIKPYSWDEFLHLGKVN------EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV 265 (657)
Q Consensus 192 ~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~ 265 (657)
.....++.++....... ..+.....++++++|+|||||||.||+|++||+++...+......+ +..++.+
T Consensus 158 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~ 233 (550)
T 3rix_A 158 --YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIP 233 (550)
T ss_dssp --BTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCT
T ss_pred --ccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhh--ccccCCC
Confidence 11233455555432111 1111223457899999999999999999999999998877654431 1126788
Q ss_pred CcEEEEecChhHHHHHHHHHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHH
Q 006197 266 DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344 (657)
Q Consensus 266 ~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~ 344 (657)
+|++++.+|++|.+++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..|.+...
T Consensus 234 ~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------- 300 (550)
T 3rix_A 234 DTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL------------- 300 (550)
T ss_dssp TCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCG-------------
T ss_pred CcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcc-------------
Confidence 9999999999999999888888999999999876 89999999999999999999999998864211
Q ss_pred HHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCc-eeeeccCCCCCCcccc
Q 006197 345 FDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF-LVQGYGLTETCGPTTV 423 (657)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~-v~~~yG~tE~~~~~~~ 423 (657)
.+.. .+++||.+++||+++++++.+++.+.++.. +++.||+||+++.++.
T Consensus 301 ---------------------~~~~--------~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~ 351 (550)
T 3rix_A 301 ---------------------IDKY--------DLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI 351 (550)
T ss_dssp ---------------------GGGS--------CCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEE
T ss_pred ---------------------cccc--------CcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceec
Confidence 1111 125899999999999999999999988875 9999999999988776
Q ss_pred ccCCCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCceEEEcC
Q 006197 424 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILP 502 (657)
Q Consensus 424 ~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~ 502 (657)
...... ..+++|+|+++++++|+| ++++ .+++.|+.|||+|+||+++.||+++++.|.+.| .+|||+|||+|++|+
T Consensus 352 ~~~~~~-~~~~vG~~~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~ 428 (550)
T 3rix_A 352 TPEGDD-KPGAVGKVVPFFEAKVVD-LDTG-KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE 428 (550)
T ss_dssp CCTTCC-CTTEEEEECTTCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT
T ss_pred CCCCCC-CCCCcccccCCcEEEEEe-CCCC-cCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeC
Confidence 655443 448999999999999998 4433 456677899999999999999999999999999 899999999999999
Q ss_pred CCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHH
Q 006197 503 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLE 579 (657)
Q Consensus 503 ~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 579 (657)
||+++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.++. +.++++|++.++...
T Consensus 429 dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~-------------- 493 (550)
T 3rix_A 429 DEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTM-------------- 493 (550)
T ss_dssp TCCEEEC-------------------------------------------------------------------------
T ss_pred CceEEEEecchheeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCC--------------
Confidence 9999999999999997 8999999999999999999999999987654 477888887764310
Q ss_pred HhccHHHHHHHHHHHHHHHHhCCCCCceeee-EEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHH
Q 006197 580 LCSLVQLQNYILSELKNAAERNKLRGFEHIK-GVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLY 649 (657)
Q Consensus 580 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~-~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i~~ly 649 (657)
. .++|.++++ .+++.|+.|. .|+++++ +|+|++|||+|++|++++.+..+.-+
T Consensus 494 --~--------~~~l~~~~~-~~l~~~~~~~~~i~~v~~------lP~t~~GKi~r~~L~~~~~~~~~~~~ 547 (550)
T 3rix_A 494 --T--------EKEIVDYVA-SQVTTAKKLRGGVVFVDE------VPKGLTGKLDARKIREILIKAKKGGK 547 (550)
T ss_dssp -----------------------------------------------------------------------
T ss_pred --C--------HHHHHHHHH-HhcccccccCCceEEEee------cCCCCCcceeHHHHHHHHHhhccccc
Confidence 0 123334443 5788776554 6777655 49999999999999999987665443
No 9
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=1.6e-73 Score=629.94 Aligned_cols=500 Identities=14% Similarity=0.148 Sum_probs=333.7
Q ss_pred cCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006197 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (657)
Q Consensus 41 ~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA 120 (657)
..++.++|+++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 29 ~~tl~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 99 (544)
T 3o83_A 29 DQPLTRILTVGVQSHPHSLAIICG----E-----RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA 99 (544)
T ss_dssp CCCTTHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEcC----C-----CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
Confidence 468999999999999999999974 3 7899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhh----hhhccccccccCceEEEEecCCcHHHHHHHhhCCcc
Q 006197 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (657)
Q Consensus 121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 196 (657)
|+++|++++|+++.++.+++.++++.++++++|++..... ...............++..+....
T Consensus 100 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 167 (544)
T 3o83_A 100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT------------ 167 (544)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT------------
T ss_pred HHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc------------
Confidence 9999999999999999999999999999999999876531 111111122234445555543211
Q ss_pred eeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChh
Q 006197 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (657)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 276 (657)
...+.++...............++++++|+|||||||.||+|++||+++.+.+......+ ++.++|++++.+|++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 242 (544)
T 3o83_A 168 DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----GLNSNTRLLCALPAP 242 (544)
T ss_dssp SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----CCCCCCeEEEecCcc
Confidence 123444444332222223455789999999999999999999999999999998887777 889999999999999
Q ss_pred HHHHHHH--HHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHh
Q 006197 277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWM 353 (657)
Q Consensus 277 ~~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (657)
|.+++.. .+.++..|+++++.+. ++..+++.++++++|+++++|+++..|++......
T Consensus 243 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------- 303 (544)
T 3o83_A 243 HNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYK------------------- 303 (544)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTH-------------------
T ss_pred eEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcc-------------------
Confidence 9999874 6778999999999876 89999999999999999999999998876432111
Q ss_pred hcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccC
Q 006197 354 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVG 433 (657)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~ 433 (657)
.++ ++||.+++||+++++++.+++.+.+++++++.||+||++..++..........+
T Consensus 304 ---------------~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~ 360 (544)
T 3o83_A 304 ---------------DQI--------QSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFT 360 (544)
T ss_dssp ---------------HHH--------TTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHHHHH
T ss_pred ---------------ccC--------CcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhhccC
Confidence 011 489999999999999999999998999999999999988655444333334457
Q ss_pred ccCcCc-cCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCceEEEcCCCcEEEEec
Q 006197 434 TAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDR 511 (657)
Q Consensus 434 ~~G~~~-~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~i~GR 511 (657)
++|+|+ ++++++|+| +++. +++.|+.|||+|+||+++.||+++++.|.+.| .+|||+|||+|++|+||+++++||
T Consensus 361 ~~G~p~~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR 437 (544)
T 3o83_A 361 TQGRPISSDDEIKIVD-EQYR--EVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGR 437 (544)
T ss_dssp CCCEESCTTCEEEEEC-TTSC--BCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEE
T ss_pred CCceecCCCcEEEEEC-CCCC--CCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEee
Confidence 899996 899999998 6655 45667899999999999999999999999999 799999999999999999999999
Q ss_pred CcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHH
Q 006197 512 KKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQN 588 (657)
Q Consensus 512 ~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (657)
.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|+..+... .
T Consensus 438 ~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~-----------------~------ 493 (544)
T 3o83_A 438 IKDQINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPEL-----------------K------ 493 (544)
T ss_dssp EC------------------------------------------------------------------------------
T ss_pred cCCEEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCCC-----------------C------
Confidence 9999996 8999999999999999999999999987654 47788888765320 0
Q ss_pred HHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006197 589 YILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV 643 (657)
Q Consensus 589 ~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~ 643 (657)
...+++++++..||.|++|+.|+++++ +|+|++||++|++|+++++.
T Consensus 494 --~~~l~~~~~~~~l~~~~~P~~i~~v~~------lP~t~~GKi~r~~L~~~~~~ 540 (544)
T 3o83_A 494 --AVVLRRHLMELGIAQYKLPDQIKLIES------LPLTAVGKVDKKQLRSILNT 540 (544)
T ss_dssp -------------------------------------------------------
T ss_pred --HHHHHHHHHhCCCCcccCCcEEEEecc------CCCCCCCCCcHHHHHHHHhh
Confidence 123334444337999999999998765 49999999999999998865
No 10
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=1.6e-72 Score=622.34 Aligned_cols=510 Identities=24% Similarity=0.268 Sum_probs=411.0
Q ss_pred cCcHHH-HHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006197 41 LNTAWD-IFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (657)
Q Consensus 41 ~~~i~~-~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~l 119 (657)
..++.+ +|.++++++ +++|+++. ++. +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus 24 ~~~l~~~~l~~~~~~~-~~~A~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 95 (548)
T 2d1s_A 24 SAGTQLRKYMERYAKL-GAIAFTNA---VTG----VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVI 95 (548)
T ss_dssp CHHHHHHHHHHHHHHH-TCEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHH
T ss_pred cCcHHHHHHHhhhccc-CCceEEEc---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Confidence 458999 899999999 99999863 221 689999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceee
Q 006197 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (657)
Q Consensus 120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 199 (657)
||+++|++++|+++.++.+++.++|+.++++++|++....+.+..... ..+....++.++.... ......
T Consensus 96 a~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~ 165 (548)
T 2d1s_A 96 AGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQK-TVTTIKTIVILDSKVD---------YRGYQC 165 (548)
T ss_dssp HHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHH-HSTTCCEEEETTCSSC---------BTTBCB
T ss_pred HHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhc-CCCCCCEEEEeCCccc---------cccccc
Confidence 999999999999999999999999999999999999887655433211 1122344555443210 001234
Q ss_pred HHHHHhcCccCCccCCCC------CCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEec
Q 006197 200 WDEFLHLGKVNEMEILPP------QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273 (657)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~------~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~ 273 (657)
+.++.........+.... .++++++++|||||||.||+|++||+++.+.+......+. ..++.++|++++.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~ 243 (548)
T 2d1s_A 166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY--GNQVSPGTAVLTVV 243 (548)
T ss_dssp HHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTT--SCCCCTTCEEEECS
T ss_pred HHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhh--ccCCCccceEEEec
Confidence 555554331110111111 2389999999999999999999999999988877654410 12678999999999
Q ss_pred ChhHHHHHHHH-HHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 006197 274 PLAHILDRVIE-EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLA 351 (657)
Q Consensus 274 pl~~~~g~~~~-~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (657)
|++|.+++... +.++ .|+++++.+. ++..+++.|+++++|+++++|+++..|.+...
T Consensus 244 p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------- 302 (548)
T 2d1s_A 244 PFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSEL-------------------- 302 (548)
T ss_dssp CTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSC--------------------
T ss_pred cHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcc--------------------
Confidence 99999998764 4556 9999998875 89999999999999999999999998864210
Q ss_pred HhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCCCCCccccccCCCcc
Q 006197 352 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMC 430 (657)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~~~ 430 (657)
.+.. .+++||.+++||+++++++.+++.+.+ +..+++.||+||++..++..... ..
T Consensus 303 --------------~~~~--------~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~-~~ 359 (548)
T 2d1s_A 303 --------------LNKY--------DLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEG-DD 359 (548)
T ss_dssp --------------GGGS--------CCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT-CC
T ss_pred --------------cccc--------cccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcc-cC
Confidence 0001 124899999999999999999999988 68899999999999877664433 33
Q ss_pred ccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCceEEEcCCCcEEEE
Q 006197 431 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKII 509 (657)
Q Consensus 431 ~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~i~ 509 (657)
..+++|+|+++++++|+|.+++ .+++.|+.|||+++||+++.||+++++.|.+.| .+|||+|||+|++|++|+++++
T Consensus 360 ~~~~~G~~~~~~~~~i~d~~~~--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~ 437 (548)
T 2d1s_A 360 KPGASGKVVPLFKAKVIDLDTK--KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIV 437 (548)
T ss_dssp CTTCCBEECTTCEEEEECTTTC--CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEE
T ss_pred CCCCCCccCCCceEEEEeCCcC--ccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEe
Confidence 4589999999999999983333 455677899999999999999999999999999 7999999999999999999999
Q ss_pred ecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHH
Q 006197 510 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL 586 (657)
Q Consensus 510 GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (657)
||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.++. .. .
T Consensus 438 GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~--------~~--------~---- 496 (548)
T 2d1s_A 438 DRLKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGK--------NM--------T---- 496 (548)
T ss_dssp EEGGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------CC--------C----
T ss_pred ccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCC--------CC--------C----
Confidence 999999997 8999999999999999999999999997654 4788999887642 00 1
Q ss_pred HHHHHHHHHHHHHhCCCCCceeee-EEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHH
Q 006197 587 QNYILSELKNAAERNKLRGFEHIK-GVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQL 648 (657)
Q Consensus 587 ~~~~~~~l~~~~~~~~l~~~~~p~-~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i~~l 648 (657)
.++|+++++ ++|+.|++|+ .|.++++ +|+|++||++|++|+++|++.|++|
T Consensus 497 ----~~~l~~~~~-~~l~~~~~p~~~i~~v~~------lP~t~~GKi~r~~L~~~~~~~i~~~ 548 (548)
T 2d1s_A 497 ----EKEVMDYVA-SQVSNAKRLRGGVRFVDE------VPKGLTGKIDGRAIREILKKPVAKM 548 (548)
T ss_dssp ----HHHHHHHHH-TTSCGGGSCTTCEEECSS------CCBCTTSCBCHHHHHHHHHSCC---
T ss_pred ----HHHHHHHHH-HhccccccccccEEEccC------CCCCCcchhHHHHHHHHHhhhhhcC
Confidence 123444444 7899999999 8998765 4999999999999999999888764
No 11
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=7.6e-73 Score=618.58 Aligned_cols=492 Identities=23% Similarity=0.303 Sum_probs=400.3
Q ss_pred HHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcC
Q 006197 46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALS 125 (657)
Q Consensus 46 ~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~~~~G 125 (657)
++|.+.++++|+++++.+... ++ +++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~-~~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 77 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETA-AG-----DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEET-TC-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhCCCCceEEEecC-CC-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 578899999999999986410 22 689999999999999999999999999999999999999999999999999
Q ss_pred CEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeHHHHHh
Q 006197 126 LICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLH 205 (657)
Q Consensus 126 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 205 (657)
++++|+++.++.+++.++++.++++++|++....+.+....... . ..+..+..... ..+.....
T Consensus 78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~-------------~~~~~~~~ 141 (503)
T 4fuq_A 78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV-G--ATVETLGPDGR-------------GSLTDAAA 141 (503)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHH-T--CEEEECCTTSC-------------SHHHHHHH
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhc-C--ceEEEecCCcc-------------cccchhhh
Confidence 99999999999999999999999999999987655432221111 1 12333332211 01111111
Q ss_pred cCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHH-H
Q 006197 206 LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-E 284 (657)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~-~ 284 (657)
.. ..........++++++|+|||||||.||+|++||+++.+.+......+ ++.++|++++.+|++|.+++.. .
T Consensus 142 ~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~ 215 (503)
T 4fuq_A 142 GA-SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----RFTPDDVLIHALPIYHTHGLFVAS 215 (503)
T ss_dssp TS-CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCSSSHCCCCCCH
T ss_pred cC-CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEeCChHHHHHHHHHH
Confidence 11 122233355789999999999999999999999999999988877777 7899999999999999988764 5
Q ss_pred HHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCCCcc
Q 006197 285 EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREAS 363 (657)
Q Consensus 285 ~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (657)
+.+++.|+++++.+. ++..+++.++ ++|+++++|+++..+.+...
T Consensus 216 ~~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~-------------------------------- 261 (503)
T 4fuq_A 216 NVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPR-------------------------------- 261 (503)
T ss_dssp HHHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--------------------------------
T ss_pred HHHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--------------------------------
Confidence 677899999988876 8999999998 89999999999998864211
Q ss_pred hhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccCccCcCccCee
Q 006197 364 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSE 443 (657)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~ 443 (657)
.. ...++++|.+++||+++++++.+.|.+.++.++++.||+||++..++... ......+++|+|+++++
T Consensus 262 --~~--------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~~~~ 330 (503)
T 4fuq_A 262 --LT--------KETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALPGVS 330 (503)
T ss_dssp --CS--------TTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCS-SSCCCTTEEEEBCTTCE
T ss_pred --cc--------ccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCC-CCCCcCCccccCCCCeE
Confidence 00 01124899999999999999999999999999999999999987754333 33444589999999999
Q ss_pred EEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCceEEEcCCCcEEEEecCcceeecCCce
Q 006197 444 LRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGE 522 (657)
Q Consensus 444 ~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~ 522 (657)
++|+| ++.+ .+++.|+.|||+|+||+++.||+++++.|.+.| .+|||+|||+|++|+||+++++||.||+||+ +|+
T Consensus 331 ~~i~d-~~~g-~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~ 407 (503)
T 4fuq_A 331 ARVTD-PETG-KELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVIT-GGF 407 (503)
T ss_dssp EEEEC-TTTC-CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEE-TTE
T ss_pred EEEEE-CCCC-CCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEE-CCE
Confidence 99998 4333 456677899999999999999999999999999 6999999999999999999999999999997 799
Q ss_pred eeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHH
Q 006197 523 YVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAE 599 (657)
Q Consensus 523 ~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 599 (657)
+|+|.+||++|.+||+|.+|+|++.++. +.++++|++.++. .. + .+++++++
T Consensus 408 ~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~--------~~--------~--------~~~l~~~l- 462 (503)
T 4fuq_A 408 NVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGA--------TI--------D--------EAQVLHGL- 462 (503)
T ss_dssp EECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------CC--------C--------HHHHHHHH-
T ss_pred EECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCC--------CC--------C--------HHHHHHHH-
Confidence 9999999999999999999999986543 4788899887643 00 1 12334444
Q ss_pred hCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006197 600 RNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 644 (657)
Q Consensus 600 ~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~ 644 (657)
+++||.|++|+.|+++++. |+|++||++|++|+++|++.
T Consensus 463 ~~~L~~~~~P~~i~~v~~l------P~t~~GKi~R~~L~~~~~~~ 501 (503)
T 4fuq_A 463 DGQLAKFKMPKKVIFVDDL------PRNTMGKVQKNVLRETYKDI 501 (503)
T ss_dssp BTTBCGGGCCSEEEEESCC------CBCTTSCBCHHHHHHHTTTT
T ss_pred HhhcccCCCCCEEEEECCC------CCCcccceeHHHHHHHHHHh
Confidence 4789999999999998664 99999999999999988653
No 12
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=2.7e-72 Score=632.06 Aligned_cols=524 Identities=16% Similarity=0.190 Sum_probs=418.6
Q ss_pred CcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006197 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (657)
Q Consensus 40 ~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~l 119 (657)
..+++.++|+++++++||++|+++. +...+..+++||+||.++++++|++|+++|+++||+|+++++|++++++++|
T Consensus 74 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~l 150 (652)
T 1pg4_A 74 TLNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAML 150 (652)
T ss_dssp EECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHH
T ss_pred ChhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 3578899999999999999999985 3333445899999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhh---------hhhcccccc-ccCceEEEEecCCcHHHHHH
Q 006197 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRS-AQRLRVMVCFTSLTAEQKEM 189 (657)
Q Consensus 120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~ 189 (657)
||+++|++++|+++.++.+++.++++.++++++|+++.... .+.+..... ...+..+++++......
T Consensus 151 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~--- 227 (652)
T 1pg4_A 151 ACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI--- 227 (652)
T ss_dssp HHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCC---
T ss_pred HHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcc---
Confidence 99999999999999999999999999999999999876432 111111110 01345566655321100
Q ss_pred HhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhh-hhhhcccccCCCCCCcE
Q 006197 190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDV 268 (657)
Q Consensus 190 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~d~ 268 (657)
.........|.+++..... ........++++++|+|||||||.||||++||++++.++.. ....+ ++.++|+
T Consensus 228 -~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~ 300 (652)
T 1pg4_A 228 -DWQEGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDI 300 (652)
T ss_dssp -CCCBTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCE
T ss_pred -cccCCCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-----CCCCCCE
Confidence 0001123467777654321 12233456899999999999999999999999998876643 33344 7889999
Q ss_pred EEEecChhHHHHHHH-HHHHHhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHH
Q 006197 269 YLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342 (657)
Q Consensus 269 ~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~ 342 (657)
+++.+|++|..+... .+.+|..|+++++++. ++..+++.|+++++|+++++|+++..|.+....
T Consensus 301 ~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---------- 370 (652)
T 1pg4_A 301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK---------- 370 (652)
T ss_dssp EEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG----------
T ss_pred EEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcc----------
Confidence 999999999999854 6788999999999874 789999999999999999999999988642110
Q ss_pred HHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcC---CceeeeccCCCCCC
Q 006197 343 RIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTETCG 419 (657)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~v~~~yG~tE~~~ 419 (657)
..+ ...+++||.+++||+++++++.+++.+.+| +++++.||+||+++
T Consensus 371 ----------------------~~~--------~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~ 420 (652)
T 1pg4_A 371 ----------------------AIE--------GTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG 420 (652)
T ss_dssp ----------------------GTT--------TCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSS
T ss_pred ----------------------ccc--------cCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCccccc
Confidence 000 012259999999999999999999998887 89999999999998
Q ss_pred ccccccCC-CccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEcc--CCcccccCCCchhhhccc---cCCccc
Q 006197 420 PTTVCFPD-EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDGWFH 493 (657)
Q Consensus 420 ~~~~~~~~-~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g--~~~~~gy~~~~~~~~~~~---~~g~~~ 493 (657)
.++....+ .....+++|+|++|++++|+| +++. +++.|+.|||+|+| |+++.|||++++.+.+.| .+|||+
T Consensus 421 ~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~--~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~ 497 (652)
T 1pg4_A 421 FMITPLPGAIELKAGSATRPFFGVQPALVD-NEGH--PQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYF 497 (652)
T ss_dssp CSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCC--BCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEE
T ss_pred ceecCCCCCcCccCCccccCcCCCeEEEEC-CCCC--CcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEE
Confidence 77665433 234558999999999999999 6665 44556899999999 799999999999887776 389999
Q ss_pred cCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHH
Q 006197 494 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYS 570 (657)
Q Consensus 494 TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~ 570 (657)
|||+|++|+||+++|+||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.++..
T Consensus 498 TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~------ 570 (652)
T 1pg4_A 498 SGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEE------ 570 (652)
T ss_dssp EEEEEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC------
T ss_pred CCcEEEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCC------
Confidence 9999999999999999999999998 7999999999999999999999999996543 47999999886530
Q ss_pred CCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHH
Q 006197 571 NGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQL 648 (657)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i~~l 648 (657)
...+ +.++|+++++ +.||.|++|+.|+++++. |+|++|||+|++|++.+.++++.+
T Consensus 571 -----------~~~~----~~~~l~~~l~-~~l~~~~~P~~i~~v~~l------P~T~sGKi~R~~L~~~~~~~~~~~ 626 (652)
T 1pg4_A 571 -----------PSPE----LYAEVRNWVR-KEIGPLATPDVLHWTDSL------PKTRSGKIMRRILRKIAAGDTSNL 626 (652)
T ss_dssp -----------CCHH----HHHHHHHHHH-HHTCGGGCCSEEEECSCC------CBCTTSCBCHHHHHHHHHTC----
T ss_pred -----------CCHH----HHHHHHHHHH-HhCCCCcCCeEEEEcCCC------CCCCCccchHHHHHHHHhCCCCCC
Confidence 1122 2344555554 579999999999997654 999999999999999998776543
No 13
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=1.4e-71 Score=616.77 Aligned_cols=513 Identities=19% Similarity=0.193 Sum_probs=415.6
Q ss_pred CCCcCcHHHHHHHHHHc-----CCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCc
Q 006197 38 DSDLNTAWDIFSMSVQK-----YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANC 111 (657)
Q Consensus 38 ~~~~~~i~~~l~~~a~~-----~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~-G~~~gd~V~i~~~n~ 111 (657)
|...+++.++|++++++ +|+++|+++. ++ .+..+++||+||.++++++|++|++. |+++||+|+++++|+
T Consensus 34 ~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~-~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~ 109 (570)
T 3c5e_A 34 PAKFNFASDVLDHWADMEKAGKRPPSPALWWV---NG-KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRV 109 (570)
T ss_dssp CSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CS-SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSC
T ss_pred CccccHHHHHHHHHHhhccccCCCCceEEEEE---cC-CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCC
Confidence 44567888999999999 9999999985 32 22347899999999999999999999 999999999999999
Q ss_pred hhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHh
Q 006197 112 PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191 (657)
Q Consensus 112 ~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 191 (657)
+++++++|||+++|++++|+++.++.+++.++++.++++++|++.+....+.... ...+.++.++.++....
T Consensus 110 ~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------- 181 (570)
T 3c5e_A 110 PEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVA-SECPSLRIKLLVSEKSC------- 181 (570)
T ss_dssp HHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHG-GGCTTCCEEEEESSSCC-------
T ss_pred HHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHh-hcCCceeEEEEecccCc-------
Confidence 9999999999999999999999999999999999999999999987766543322 12234455565554210
Q ss_pred hCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHH--hhhhhhhhcccccCCCCCCcEE
Q 006197 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT--FVSGVDLFLDQFEDKMTVDDVY 269 (657)
Q Consensus 192 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~--~~~~~~~~~~~~~~~~~~~d~~ 269 (657)
.....+.+++..... ........++++++|+|||||||.||+|++||+ ++. ..... ..+ ++.++|++
T Consensus 182 ---~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-----~~~~~d~~ 250 (570)
T 3c5e_A 182 ---DGWLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-----GLQASDIM 250 (570)
T ss_dssp ---TTSEEHHHHHHHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-----SCCTTCEE
T ss_pred ---cccccHHHHhhcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-----CCCCCceE
Confidence 113356666544322 122234568999999999999999999999999 444 33332 333 78899999
Q ss_pred EEecChhHHHHHHH-HHHHHhcCcEEEEec---CChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHH
Q 006197 270 LSFLPLAHILDRVI-EEYFFRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF 345 (657)
Q Consensus 270 l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~ 345 (657)
++.+|++|.+++.. .+.++..|+++++.. .++..+++.|+++++|+++++|+++..|.+..
T Consensus 251 ~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~--------------- 315 (570)
T 3c5e_A 251 WTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD--------------- 315 (570)
T ss_dssp EECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC---------------
T ss_pred EEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc---------------
Confidence 99999999999874 677899999999885 38999999999999999999999999886420
Q ss_pred HHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCcccccc
Q 006197 346 DALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF 425 (657)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~ 425 (657)
.+ ...+++||.+++||+++++++.+.+.+.+|+++++.||+||++..++...
T Consensus 316 --------------------~~--------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~ 367 (570)
T 3c5e_A 316 --------------------LS--------SYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSK 367 (570)
T ss_dssp --------------------TT--------TCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCT
T ss_pred --------------------cc--------ccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecCc
Confidence 00 00125899999999999999999999988999999999999987655443
Q ss_pred CCCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEc-----cCCcccccCCCchhhhccccCCccccCceEEE
Q 006197 426 PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR-----GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI 500 (657)
Q Consensus 426 ~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~-----g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~ 500 (657)
. .....+++|+|+++++++|+| +++. +++.|+.|||+|+ |++++.||+++++.|.+.|.+|||+|||+|++
T Consensus 368 ~-~~~~~~~vG~p~~~~~v~i~d-~~g~--~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~~ 443 (570)
T 3c5e_A 368 T-MKIKPGYMGTAASCYDVQIID-DKGN--VLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIK 443 (570)
T ss_dssp T-SCCCTTCCCEECTTCCEEEEC-TTSC--BCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEEE
T ss_pred c-cccCCCcccccCCCceEEEEC-CCCC--CCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeEEE
Confidence 3 233458999999999999999 6654 4566789999999 99999999999999999999999999999999
Q ss_pred cCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccH
Q 006197 501 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSF 577 (657)
Q Consensus 501 ~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~ 577 (657)
|+||+++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.++...
T Consensus 444 d~dG~l~~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~------------ 510 (570)
T 3c5e_A 444 DEDGYFQFMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLS------------ 510 (570)
T ss_dssp CTTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTT------------
T ss_pred cCCceEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccC------------
Confidence 999999999999999997 8999999999999999999999999997643 478899998765300
Q ss_pred HHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHH
Q 006197 578 LELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQ 647 (657)
Q Consensus 578 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i~~ 647 (657)
.. .+.+.++|+++++ ..||.|++|+.|+++++. |+|++||++|++|++++.+.-++
T Consensus 511 ----~~---~~~~~~~l~~~l~-~~L~~~~~P~~i~~v~~l------P~t~~GKi~R~~L~~~~~~~s~~ 566 (570)
T 3c5e_A 511 ----HD---PEQLTKELQQHVK-SVTAPYKYPRKIEFVLNL------PKTVTGKIQRAKLRDKEWKMSGK 566 (570)
T ss_dssp ----SC---HHHHHHHHHHHHH-HHSCGGGSCSEEEEESCC------CBCTTCCBCHHHHHHHHTC----
T ss_pred ----cc---hHHHHHHHHHHHH-hhCccccCCcEEEEeccC------CCCCCcCCcHHHHHHHHHhhhhc
Confidence 00 1123345555554 579999999999998664 99999999999999987654433
No 14
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=2.3e-72 Score=616.56 Aligned_cols=492 Identities=22% Similarity=0.269 Sum_probs=325.6
Q ss_pred CcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006197 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (657)
Q Consensus 40 ~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~l 119 (657)
...|+.++|+++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus 4 ~~~tl~~~l~~~a~~~pd~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 74 (509)
T 3ivr_A 4 HDFTLADVYRRNAALFPDRTAFMVD----G-----VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG 74 (509)
T ss_dssp TCCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHCCCceEEEEC----C-----cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4679999999999999999999874 3 789999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceee
Q 006197 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (657)
Q Consensus 120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 199 (657)
||+++|++++|+++.++.+++.++++.++++++|++.+....+.... ........++.+++... .
T Consensus 75 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------------~ 139 (509)
T 3ivr_A 75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVL-PSLGGVKKAYAIGDGSG--------------P 139 (509)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHG-GGCSSCCEEEESSCCCS--------------S
T ss_pred HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhh-cccCCceEEEEcCCCCc--------------C
Confidence 99999999999999999999999999999999999988766543332 23345556666554211 1
Q ss_pred HHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 006197 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279 (657)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~ 279 (657)
+.++...............++++++|+|||||||.||+|++||+++.+.+......+ ++.++|++++.+|++|.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~ 214 (509)
T 3ivr_A 140 FAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-----RLTEADVNLGMLPLFHVT 214 (509)
T ss_dssp CEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHH
T ss_pred hhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEeCCCcchh
Confidence 222222111222333456789999999999999999999999999999998887776 889999999999999999
Q ss_pred HHHHHHHHHhcCcE-EEEecCChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCC
Q 006197 280 DRVIEEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYK 358 (657)
Q Consensus 280 g~~~~~~~l~~G~~-~v~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (657)
++...+.++..|++ +++...++..+++.++++++|+++++|+++..|++...
T Consensus 215 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--------------------------- 267 (509)
T 3ivr_A 215 GLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA--------------------------- 267 (509)
T ss_dssp HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC---------------------------
T ss_pred HHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc---------------------------
Confidence 99877665544444 44444599999999999999999999999999875320
Q ss_pred CCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCCCCCccccccCCCccccCccCc
Q 006197 359 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP 437 (657)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~ 437 (657)
. ..++++|.++.+|++ +..+.+.+.+ ++++++.||+||++++++....... ..++|+
T Consensus 268 ---------~--------~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~--~~~~G~ 325 (509)
T 3ivr_A 268 ---------P--------AQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRDR--PKSAGR 325 (509)
T ss_dssp ---------G--------GGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGGS--TTSCCE
T ss_pred ---------c--------cchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccccC--CCcccc
Confidence 0 011489999999987 7888888887 9999999999999987776544322 256999
Q ss_pred CccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCCcEEEEecC--cce
Q 006197 438 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK--KNL 515 (657)
Q Consensus 438 ~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR~--~d~ 515 (657)
|+++++++|+| +++. +++.|+.|||+|+||+++.||+++++.+.+.|.+|||+|||+|++|++|++++.||. +|+
T Consensus 326 p~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ 402 (509)
T 3ivr_A 326 PLFWRTVAVVD-AEDR--PLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKEL 402 (509)
T ss_dssp ECTTCEEEEEC-TTSC--BCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC-----
T ss_pred cCCCcEEEEEC-CCCC--CCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECCCceEEEeCCCCccee
Confidence 99999999999 6654 556678999999999999999999999999999999999999999999999999999 999
Q ss_pred eecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHH
Q 006197 516 IKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILS 592 (657)
Q Consensus 516 i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (657)
||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++++|++.++... . .+
T Consensus 403 ik~-~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~----------------~--------~~ 457 (509)
T 3ivr_A 403 IKT-GGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESI----------------A--------AD 457 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEE-CCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCC----------------C--------HH
Confidence 996 8999999999999999999999999987654 468888887764310 0 12
Q ss_pred HHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006197 593 ELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 644 (657)
Q Consensus 593 ~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~ 644 (657)
+|+++++ ..||.|++|+.|+++++ +|+|++|||+|++|++++++.
T Consensus 458 ~l~~~l~-~~L~~~~~P~~i~~v~~------lP~t~~GKidr~~Lr~~~~~~ 502 (509)
T 3ivr_A 458 ALAEFVA-SLIARYKKPKHVVFVEA------LPKDAKGAIDRAAVKTAHGQE 502 (509)
T ss_dssp ----------------------------------------------------
T ss_pred HHHHHHH-hhCcccCCCcEEEEecC------CCCCCCCCccHHHHHHHHhhc
Confidence 3444443 68999999999998765 499999999999999998764
No 15
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=7.1e-72 Score=628.78 Aligned_cols=536 Identities=18% Similarity=0.190 Sum_probs=416.6
Q ss_pred CCC-CCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCchh
Q 006197 36 SVD-SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQ 113 (657)
Q Consensus 36 ~~~-~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~-~~G~~~gd~V~i~~~n~~e 113 (657)
+.+ ...+++.++|+++++++||++|+++. +...+..+++||+||.++++++|++|+ ++|+++||+|+++++|+++
T Consensus 75 wf~~~~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e 151 (663)
T 1ry2_A 75 WFLNGQLNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPE 151 (663)
T ss_dssp BSTTCEECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHH
T ss_pred cCCCCCccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH
Confidence 444 33578999999999999999999985 332344589999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhh--------hhccccccccCceEEEEecCCcHH
Q 006197 114 WVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE--------LLSPDCRSAQRLRVMVCFTSLTAE 185 (657)
Q Consensus 114 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~--------~~~~~~~~~~~~~~i~~~~~~~~~ 185 (657)
+++++|||+++|++++|+++.++.+++.++|+.++++++|+++..... .........+.++.+++++.....
T Consensus 152 ~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~ 231 (663)
T 1ry2_A 152 AIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNP 231 (663)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCS
T ss_pred HHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCC
Confidence 999999999999999999999999999999999999999998764321 111111122345566666532100
Q ss_pred HHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhh-hhhhcccccCCCC
Q 006197 186 QKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMT 264 (657)
Q Consensus 186 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~~ 264 (657)
. ..........|.+++.... ...+.....++++++|+|||||||.||||++||++++.++.. ....+ ++.
T Consensus 232 ~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~ 302 (663)
T 1ry2_A 232 S---VAFHAPRDLDWATEKKKYK-TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTH 302 (663)
T ss_dssp S---CCCCSSSEEEHHHHHTTSC-SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCC
T ss_pred c---cccCCCccccHHHHHhhcC-CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-----CCC
Confidence 0 0000112346777765432 222334456899999999999999999999999998876643 33334 789
Q ss_pred CCcEEEEecChhHHHHHHH-HHHHHhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhc
Q 006197 265 VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338 (657)
Q Consensus 265 ~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~ 338 (657)
++|++++..|++|..+... .+.+|..|+++++++. ++..+++.|+++++|+++++|+++..|.+....
T Consensus 303 ~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~------ 376 (663)
T 1ry2_A 303 QEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDS------ 376 (663)
T ss_dssp SSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTT------
T ss_pred CCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCcc------
Confidence 9999999999999999854 6788999999999864 689999999999999999999999887532100
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcC---CceeeeccCC
Q 006197 339 PLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLT 415 (657)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~v~~~yG~t 415 (657)
..+. ..+++||.+++||+++++++.+++.+.+| +++++.||+|
T Consensus 377 --------------------------~~~~--------~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~T 422 (663)
T 1ry2_A 377 --------------------------YIEN--------HSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQT 422 (663)
T ss_dssp --------------------------SSSS--------CCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCT
T ss_pred --------------------------cccc--------CCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCc
Confidence 0000 11258999999999999999999999887 8999999999
Q ss_pred CCCCccccccC--CCccccCccCcCccCeeEEEeecC-CCCCCCCCC-CCCceEEEcc--CCcccccCCCchhhhccc--
Q 006197 416 ETCGPTTVCFP--DEMCMVGTAGPVSVYSELRLEEVP-EMGYSPLDD-PPCGEVCVRG--KTLFSGYYKNPDLTRESI-- 487 (657)
Q Consensus 416 E~~~~~~~~~~--~~~~~~~~~G~~~~~~~~~iv~~~-~~~~~~~~~-~~~GEl~v~g--~~~~~gy~~~~~~~~~~~-- 487 (657)
|+++.++.... ......+++|.|++|++++|+| + ++. +++. |+.|||+++| |+++.|||++++.+.+.|
T Consensus 423 E~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g~--~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~ 499 (663)
T 1ry2_A 423 ESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGE--ELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLN 499 (663)
T ss_dssp TTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTT--CEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTS
T ss_pred cccCeeeccCCCCCcccCCCccccCcCCCeEEEEc-CCCCC--cCCCCCcceEEEEecCCCchhcccccChHHHHHhhhc
Confidence 99987666543 2234568999999999999999 5 544 3334 6799999999 589999999999888876
Q ss_pred -cCCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhh
Q 006197 488 -IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEED 563 (657)
Q Consensus 488 -~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~ 563 (657)
.+|||+|||+|++|+||+++|+||.||+||+ +|++|++.+||++|.+||+|.+|+|++.+++ +.++|+|++.++.
T Consensus 500 ~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~ 578 (663)
T 1ry2_A 500 PYPGYYFTGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKS 578 (663)
T ss_dssp SSTTSEEEEEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC---
T ss_pred CCCCEEEcCCEEEEcCCCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCC
Confidence 3899999999999999999999999999997 7999999999999999999999999997653 5799999998753
Q ss_pred HHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006197 564 TKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV 643 (657)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~ 643 (657)
... .. .+. ..+.+.++|+++++ +.||.|++|+.|+++++. |+|++||++|++|++.+.+
T Consensus 579 ~~~-----~~--------~~~-~~~~l~~~l~~~l~-~~L~~~~~P~~i~~v~~l------P~T~sGKi~R~~L~~~~~~ 637 (663)
T 1ry2_A 579 SWS-----TA--------TDD-ELQDIKKHLVFTVR-KDIGPFAAPKLIILVDDL------PKTRSGKIMRRILRKILAG 637 (663)
T ss_dssp -----------------------CCSHHHHHHHHHH-HHTCTTTSCSEEEECSCC------CBCTTSCBCHHHHHHSCC-
T ss_pred ccc-----cc--------cch-hHHHHHHHHHHHHH-HhCCCCcCCeEEEEcCCC------CCCCccCchHHHHHHHHcC
Confidence 100 00 000 00023445555555 579999999999997654 9999999999999999987
Q ss_pred HHHHH
Q 006197 644 EIDQL 648 (657)
Q Consensus 644 ~i~~l 648 (657)
+++.+
T Consensus 638 ~~~~~ 642 (663)
T 1ry2_A 638 ESDQL 642 (663)
T ss_dssp -----
T ss_pred CCCCC
Confidence 65544
No 16
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=1.4e-71 Score=618.01 Aligned_cols=480 Identities=20% Similarity=0.185 Sum_probs=317.9
Q ss_pred CCCCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH
Q 006197 37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116 (657)
Q Consensus 37 ~~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~ 116 (657)
..+...+++++|+++++++||++|+++. + +++||+||.++++++|++|+++|+++||+|+++++|++++++
T Consensus 70 ~~~~~~~l~~~l~~~a~~~pd~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~ 140 (570)
T 4gr5_A 70 RAPAGACVHELFEAQAARAPDAVALLHE----A-----DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVV 140 (570)
T ss_dssp CCCCSCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHH
T ss_pred cCCccCCHHHHHHHHHHHCCCCeEEECC----C-----CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHH
Confidence 3455779999999999999999999875 3 689999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcc
Q 006197 117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (657)
Q Consensus 117 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 196 (657)
++|||+++|++++|+++.++.+++.++++.++++++|++......+. ....++..+...
T Consensus 141 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~--------~~~~~~~~~~~~------------- 199 (570)
T 4gr5_A 141 ALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLT--------GTTTLYVEDEAA------------- 199 (570)
T ss_dssp HHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSC--------SSEEEECCC----------------
T ss_pred HHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhccc--------CCcceeeecccc-------------
Confidence 99999999999999999999999999999999999999987554321 111222111100
Q ss_pred eeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChh
Q 006197 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (657)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 276 (657)
.............++++++|+|||||||.||+|++||+++.+.+... ..+ ++.++|++++.+|++
T Consensus 200 ---------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-~~~-----~~~~~d~~l~~~p~~ 264 (570)
T 4gr5_A 200 ---------SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQ-DYA-----GFGPDEVFLQCSPVS 264 (570)
T ss_dssp -------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSSC-CSS-----CCSTTCEEEECSCTT
T ss_pred ---------ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHhh-hhc-----CCCCCCEEEEecCcc
Confidence 00011122234578999999999999999999999999998776552 222 688999999999999
Q ss_pred HHHHHHHHHHHHhcCcEEEEecC---ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHh
Q 006197 277 HILDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWM 353 (657)
Q Consensus 277 ~~~g~~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (657)
|..+....+.++..|+++++.+. ++..+++.|+++++|++.++|+++..|.+....
T Consensus 265 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~--------------------- 323 (570)
T 4gr5_A 265 WDAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE--------------------- 323 (570)
T ss_dssp SSTHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG---------------------
T ss_pred HHHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh---------------------
Confidence 87776677888999999998863 889999999999999999999999988653110
Q ss_pred hcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCCCCCccccccCCC---c
Q 006197 354 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---M 429 (657)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~---~ 429 (657)
.+++||.+++||++++++..+.+.+.+ ++.+++.||+||+++.++...... .
T Consensus 324 ------------------------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~ 379 (570)
T 4gr5_A 324 ------------------------AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLS 379 (570)
T ss_dssp ------------------------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTT
T ss_pred ------------------------hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccC
Confidence 114899999999999999998888876 889999999999998776554322 2
Q ss_pred cccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cC--------CccccCceEEE
Q 006197 430 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID--------GWFHTGDIGQI 500 (657)
Q Consensus 430 ~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~--------g~~~TGDl~~~ 500 (657)
....++|+|+++++++|+| +++. +++.|+.|||+|+||+++.||+++++.|.+.| .+ |||+|||+|++
T Consensus 380 ~~~~~iG~p~~~~~v~i~d-~~~~--~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~ 456 (570)
T 4gr5_A 380 GTALPIGVPLAGKRAYVLD-DDLK--PAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARR 456 (570)
T ss_dssp SSSCCCBEECTTEEEEEEC-TTSC--BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEE
T ss_pred CCccccceeeCCCEEEEEC-CCCC--CCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEE
Confidence 2336799999999999999 6654 55567899999999999999999999999988 33 79999999999
Q ss_pred cCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccH
Q 006197 501 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSF 577 (657)
Q Consensus 501 ~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~ 577 (657)
|+||+|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++..+...
T Consensus 457 d~dG~l~~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~------------ 523 (570)
T 4gr5_A 457 RADGVLEYVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAP------------ 523 (570)
T ss_dssp CTTSCEEEEEC---------------------------------------------------------------------
T ss_pred CCCCeEEEEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCC------------
Confidence 999999999999999997 8999999999999999999999999997643 478888887653200
Q ss_pred HHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006197 578 LELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY 640 (657)
Q Consensus 578 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~ 640 (657)
...++|+++++ ++||.|++|+.++++++ +|+|++|||+|++|++.
T Consensus 524 -----------~~~~~l~~~l~-~~l~~~~~P~~i~~v~~------lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 524 -----------PDAAELRRHVA-EALPAYMVPVECVPVDE------LPRTPNGKLDRRALTGS 568 (570)
T ss_dssp ---------------------------------------------------------------
T ss_pred -----------cCHHHHHHHHH-hhCccccCCcEEEEccc------CCCCCCcCcchHhhhcc
Confidence 01233444444 68999999999998765 49999999999999864
No 17
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=4.5e-71 Score=606.36 Aligned_cols=487 Identities=18% Similarity=0.209 Sum_probs=405.5
Q ss_pred CcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCchhHHHHHHH
Q 006197 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEA 120 (657)
Q Consensus 42 ~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~-G~~~gd~V~i~~~n~~e~~~~~lA 120 (657)
.++.++|+++|+++|+++|+++. + +++||+||.++++++|++|++. |.++|++|+++++|++++++++||
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA 71 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ----G-----QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG 71 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence 37899999999999999999874 3 7899999999999999999985 889999999999999999999999
Q ss_pred HHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeH
Q 006197 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (657)
Q Consensus 121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 200 (657)
|+++|++++|+++.++.+++.++++.++++++|++......... . ......+
T Consensus 72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~------~----------------------~~~~~~~ 123 (511)
T 3e7w_A 72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVG------Q----------------------QIQTVSA 123 (511)
T ss_dssp HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCC------C----------------------SSCEEEH
T ss_pred HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhcc------c----------------------ccceecH
Confidence 99999999999999999999999999999999997653221100 0 0112344
Q ss_pred HHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 006197 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (657)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g 280 (657)
.++...............++++++|+|||||||.||+|++||+++.+.+......+ ++.++|++++.+|++|.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 198 (511)
T 3e7w_A 124 EELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----PVSGGKIFLNQAPFSFDLS 198 (511)
T ss_dssp HHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----TTTTTCEEEECSCTTSTHH
T ss_pred hhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCccceEEEeCCccHHHH
Confidence 45554332222233345788999999999999999999999999999988877766 7899999999999999999
Q ss_pred HHHHHHHHhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcC
Q 006197 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMG 356 (657)
Q Consensus 281 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (657)
+...+.++..|+++++.+. ++..+++.++++++|++.++|+++..+.+...
T Consensus 199 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------- 253 (511)
T 3e7w_A 199 VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG------------------------- 253 (511)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT-------------------------
T ss_pred HHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc-------------------------
Confidence 8888889999999998864 78999999999999999999999988763210
Q ss_pred CCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCCCCCccccccCCC----ccc
Q 006197 357 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE----MCM 431 (657)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~----~~~ 431 (657)
.. ...++++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++...... ...
T Consensus 254 ---------~~--------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~ 316 (511)
T 3e7w_A 254 ---------FS--------QDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSE 316 (511)
T ss_dssp ---------CS--------TTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCS
T ss_pred ---------cc--------cccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCC
Confidence 00 01125899999999999999999999988 899999999999998776544322 223
Q ss_pred cCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc--cCC--ccccCceEEEcCCCcEE
Q 006197 432 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDG--WFHTGDIGQILPNGVVK 507 (657)
Q Consensus 432 ~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~--~~g--~~~TGDl~~~~~~G~l~ 507 (657)
..++|.|+++++++|+| +++. +++.|+.|||+|+||+++.||+++++.|.+.| .+| ||+|||+|++ +||+++
T Consensus 317 ~~~~G~~~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~ 392 (511)
T 3e7w_A 317 SLPVGFAKPDMNIFIMD-EEGQ--PLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIF 392 (511)
T ss_dssp SCCCBEECTTCEEEEEC-TTSC--BCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEE
T ss_pred cCCCcceeCCCEEEEEC-CCCC--CCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEE
Confidence 36799999999999999 6654 55667899999999999999999999999998 344 7999999999 599999
Q ss_pred EEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccH
Q 006197 508 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLV 584 (657)
Q Consensus 508 i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (657)
++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.++. +.++|+|++.++.. . ..
T Consensus 393 ~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~----------~------~~- 454 (511)
T 3e7w_A 393 CQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEF----------E------KE- 454 (511)
T ss_dssp EEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCC----------S------SH-
T ss_pred EEccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccc----------c------ch-
Confidence 99999999997 8999999999999999999999999986543 47899998876431 0 11
Q ss_pred HHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006197 585 QLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 644 (657)
Q Consensus 585 ~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~ 644 (657)
..+.+.|+++++ ++||.|++|+.++++++ +|+|++|||+|++|++++.+.
T Consensus 455 ---~~~~~~l~~~l~-~~L~~~~~P~~~~~v~~------lP~t~~GKi~R~~L~~~~~~~ 504 (511)
T 3e7w_A 455 ---FQLTSAIKKELA-ASLPAYMIPRKFIYQDH------IQMTANGKIDRKRIGEEVLVR 504 (511)
T ss_dssp ---HHHHHHHHHHHH-HHSCGGGSCSEEEECSC------CCBCTTSCBCHHHHHHHHHHH
T ss_pred ---hhHHHHHHHHHH-hhCchhhCCeeEEEecc------CCCCCCcCccHHHHHhHHhhh
Confidence 123344555554 57999999999999765 499999999999999988753
No 18
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=2e-71 Score=609.62 Aligned_cols=488 Identities=18% Similarity=0.199 Sum_probs=399.9
Q ss_pred CcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 006197 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (657)
Q Consensus 42 ~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~ 121 (657)
.+|.++|+++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~ 71 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC 71 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 37899999999999999999975 3 68999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeHH
Q 006197 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD 201 (657)
Q Consensus 122 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (657)
+++|++++|+++.++.+++.++++.++++++|++....... ... .++..+ .+.
T Consensus 72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~--------~~~-~~~~~~------------------~~~ 124 (512)
T 3fce_A 72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD--------LPV-RIVSED------------------NLK 124 (512)
T ss_dssp HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC--------CSS-EEEETH------------------HHH
T ss_pred HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc--------ccc-ceechh------------------hhh
Confidence 99999999999999999999999999999999975432110 001 111110 111
Q ss_pred HHHhc-CccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 006197 202 EFLHL-GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (657)
Q Consensus 202 ~l~~~-~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g 280 (657)
.+... ......+.....++++++|+|||||||.||+|++||+++.+.+......+ ++.++|++++.+|++|.++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 199 (512)
T 3fce_A 125 DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-----NLQTGQVFLNQAPFSFDLS 199 (512)
T ss_dssp HHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-----TCCSSCEEEECSCTTSGGG
T ss_pred hhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHhHH
Confidence 11111 11122223345789999999999999999999999999999988877766 7899999999999999999
Q ss_pred HHHHHHHHhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcC
Q 006197 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMG 356 (657)
Q Consensus 281 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (657)
+...+.++..|+++++.+. ++..+++.++++++|++.++|+++..++....
T Consensus 200 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------- 254 (512)
T 3fce_A 200 VMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS------------------------- 254 (512)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT-------------------------
T ss_pred HHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc-------------------------
Confidence 8888889999999999874 88999999999999999999999988753210
Q ss_pred CCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCCCCCccccccCCC----ccc
Q 006197 357 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE----MCM 431 (657)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~----~~~ 431 (657)
.. ...++++|.+++||+++++++.+++.+.+ ++++++.||+||+++.++...... ...
T Consensus 255 ---------~~--------~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~ 317 (512)
T 3fce_A 255 ---------FS--------ESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYK 317 (512)
T ss_dssp ---------CS--------TTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCS
T ss_pred ---------cc--------chhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccC
Confidence 00 01225899999999999999999999988 899999999999998777554432 123
Q ss_pred cCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhcccc----CCccccCceEEEcCCCcEE
Q 006197 432 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII----DGWFHTGDIGQILPNGVVK 507 (657)
Q Consensus 432 ~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~----~g~~~TGDl~~~~~~G~l~ 507 (657)
..++|.|+++++++++| +++. +++.|+.|||+++||+++.|||++++.+.+.|. +|||+|||+|++ ++|+++
T Consensus 318 ~~~~G~~~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~ 393 (512)
T 3fce_A 318 SLPVGYCKSDCRLLIMK-EDGT--IAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLF 393 (512)
T ss_dssp SCCCEEECTTCEEEEEC-SSSC--BCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEE
T ss_pred CCccccccCCcEEEEEC-CCCC--CCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEE
Confidence 47899999999999999 6654 455678999999999999999999999999883 569999999999 799999
Q ss_pred EEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccH
Q 006197 508 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLV 584 (657)
Q Consensus 508 i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (657)
+.||.||+||+ +|++|+|.+||+.|.+||+|.+|+|++.++. +.++|+|++.++.. . ..
T Consensus 394 i~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~----------~------~~- 455 (512)
T 3fce_A 394 YNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSF----------E------KE- 455 (512)
T ss_dssp EEEEGGGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCC----------S------SH-
T ss_pred EecccCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccc----------c------ch-
Confidence 99999999998 8999999999999999999999999986543 47888988876420 0 01
Q ss_pred HHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006197 585 QLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 644 (657)
Q Consensus 585 ~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~ 644 (657)
..+.+.|+++++ ++||.|++|+.++++++ +|+|++|||+|++|++.|+++
T Consensus 456 ---~~~~~~l~~~l~-~~L~~~~~P~~~~~~~~------lP~t~~GKi~R~~L~~~~~~~ 505 (512)
T 3fce_A 456 ---FKLTSAIKKELN-ERLPNYMIPRKFMYQSS------IPMTPNGKVDRKKLLSEVTAL 505 (512)
T ss_dssp ---HHHHHHHHHHHH-TTSCGGGSCSEEEECSC------CCBCTTSSBCHHHHHHHHHC-
T ss_pred ---hhhHHHHHHHHH-hhCchhcCCeEEEEecc------cCCCCCcChHHHHHHhhhhhc
Confidence 123345566665 78999999999998765 499999999999999998764
No 19
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=1.5e-70 Score=605.12 Aligned_cols=503 Identities=21% Similarity=0.218 Sum_probs=397.0
Q ss_pred CCCCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH
Q 006197 37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116 (657)
Q Consensus 37 ~~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~ 116 (657)
.|..++++.++|+++++ +|+++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++
T Consensus 19 ~p~~~~~~~~~l~~~~~-~p~~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~ 88 (529)
T 2v7b_A 19 PPALFNFAAYLFRLNET-RAGKTAYIDD----T-----GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPV 88 (529)
T ss_dssp ---CCCHHHHHHHHTGG-GTTSEEEECS----S-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHH
T ss_pred CccceeHHHHHHHhhhc-cCCceEEEeC----C-----CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHH
Confidence 34567789999999999 9999999864 2 589999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCc-eEEEEecCCcHHHHHHHhhCCc
Q 006197 117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQTGI 195 (657)
Q Consensus 117 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~ 195 (657)
++|||+++|++++|+++.++.+++.++++.++++++|++......+..... ..... ..++..+..... ..
T Consensus 89 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--------~~ 159 (529)
T 2v7b_A 89 AFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALE-SAEHDGCQLIVSQPRESE--------PR 159 (529)
T ss_dssp HHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHH-CC---CCEEEEECC--------------
T ss_pred HHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHh-hccccCceEEEecccccc--------cc
Confidence 999999999999999999999999999999999999999876654433211 11122 344443332110 00
Q ss_pred ceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhH-HHhhhhhhhhcccccCCCCCCcEEEEecC
Q 006197 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI-ATFVSGVDLFLDQFEDKMTVDDVYLSFLP 274 (657)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l-~~~~~~~~~~~~~~~~~~~~~d~~l~~~p 274 (657)
....+.++..... .........++++++++|||||||.||+|++||+++ ..........+ ++.++|++++.+|
T Consensus 160 ~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-----~~~~~d~~~~~~p 233 (529)
T 2v7b_A 160 LAPLFEELIDAAA-PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-----GIAENDVVFSAAK 233 (529)
T ss_dssp CCCBHHHHHHTSC-CCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-----CCCTTCEEEESSC
T ss_pred cccchhhhhccCC-CcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-----CCCCCcEEEEeec
Confidence 1124556554321 122233457899999999999999999999999999 56555544444 7889999999999
Q ss_pred hhHHHHHHH-HHHHHhcCcEEEEec--CChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 006197 275 LAHILDRVI-EEYFFRRGASVGYYH--GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLA 351 (657)
Q Consensus 275 l~~~~g~~~-~~~~l~~G~~~v~~~--~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (657)
++|.+++.. .+.++..|+++++.+ .++..+++.++++++|+++++|+++..+.+...
T Consensus 234 ~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------- 293 (529)
T 2v7b_A 234 LFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPN-------------------- 293 (529)
T ss_dssp TTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTT--------------------
T ss_pred HHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcc--------------------
Confidence 999999875 567899999999873 389999999999999999999999988763210
Q ss_pred HhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccc
Q 006197 352 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM 431 (657)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~ 431 (657)
.... ...++|.+++||+++++++.+.+.+.+|+++++.||+||++..++.+.... ..
T Consensus 294 ----------~~~~------------~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~-~~ 350 (529)
T 2v7b_A 294 ----------LPAR------------ADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGA-VE 350 (529)
T ss_dssp ----------CCCG------------GGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTC-CC
T ss_pred ----------cccc------------cCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCC-Cc
Confidence 0000 013799999999999999999999988999999999999977666554433 34
Q ss_pred cCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCCcEEEEec
Q 006197 432 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDR 511 (657)
Q Consensus 432 ~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR 511 (657)
.+++|.|+++++++|+| +++. +++.|+.|||+|+||+++.||+++++.+.+.|.+|||+|||+|+++++|++++.||
T Consensus 351 ~~~~G~p~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~~~GR 427 (529)
T 2v7b_A 351 YGTTGRPVPGYEIELRD-EAGH--AVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGR 427 (529)
T ss_dssp TTSCCEECTTCEEEEEC-TTSC--BCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEE
T ss_pred cCCcccCCCCCEEEEEC-CCCC--CCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECCCccEEEeCc
Confidence 48999999999999999 6654 45567899999999999999999999999999999999999999999999999999
Q ss_pred CcceeecCCceeeccHHHHHHHhcCcccceEEEEecCC--CCeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHH
Q 006197 512 KKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL--KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY 589 (657)
Q Consensus 512 ~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~--~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (657)
.||+||+ +|++|+|.+||++|.+||+|.+|+|++... .+.++|+|++.++.. .....
T Consensus 428 ~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~~-----------------~~~~~--- 486 (529)
T 2v7b_A 428 SDDMLKV-SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREFA-----------------PSEIL--- 486 (529)
T ss_dssp GGGCBC-----CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTCC-----------------CCHHH---
T ss_pred cCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCCC-----------------cchhH---
Confidence 9999997 899999999999999999999999999722 247889998876420 01111
Q ss_pred HHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006197 590 ILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI 639 (657)
Q Consensus 590 ~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~ 639 (657)
.++|+++++ +.||.|++|+.|+++++. |+|++||++|++|++
T Consensus 487 -~~~l~~~l~-~~L~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 487 -AEELKAFVK-DRLAPHKYPRDIVFVDDL------PKTATGKIQRFKLRE 528 (529)
T ss_dssp -HHHHHHHHH-TTSCTTTSCSEEEEESCC------CBCTTSCBCHHHHHC
T ss_pred -HHHHHHHHH-hhcchhhCCeEEEEeccC------CCCCccchhHHhHhh
Confidence 234555554 789999999999998764 999999999999975
No 20
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=1.9e-70 Score=614.43 Aligned_cols=502 Identities=18% Similarity=0.179 Sum_probs=412.7
Q ss_pred CcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006197 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (657)
Q Consensus 40 ~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~l 119 (657)
...++.++|+++++ ||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus 25 ~~~~l~~~~~~~a~--pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~l 93 (617)
T 3rg2_A 25 QDLPLTDILTRHAA--SDSIAVIDG---E------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFF 93 (617)
T ss_dssp CCCCTTHHHHTTTT--CCSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcCCHHHHHHHhhC--CCCeEEecC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence 35789999999987 999999975 3 789999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhh----hhhccccccccCceEEEEecCCcHHHHHHHhhCCc
Q 006197 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195 (657)
Q Consensus 120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 195 (657)
||+++|++++|+++.++.+++.++++.+++++++++..... ...............+........
T Consensus 94 A~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 162 (617)
T 3rg2_A 94 ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE----------- 162 (617)
T ss_dssp HHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST-----------
T ss_pred HHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc-----------
Confidence 99999999999999999999999999999999999876541 111111112233444444443221
Q ss_pred ceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecCh
Q 006197 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275 (657)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl 275 (657)
..+.+..... .......+..++++++|+|||||||.||||+++|+++.+.+......+ ++.++|++++.+|+
T Consensus 163 --~~~~~~~~~~-~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~ 234 (617)
T 3rg2_A 163 --HNLQDAINHP-AEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----QFTQQTRYLCAIPA 234 (617)
T ss_dssp --TBHHHHHHSC-CSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCT
T ss_pred --cchhhhhccc-ccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----CCCCcceEEEeccc
Confidence 1233333322 122233445789999999999999999999999999999998887777 78999999999999
Q ss_pred hHHHHHHH--HHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 006197 276 AHILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAW 352 (657)
Q Consensus 276 ~~~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (657)
+|.+++.. .+.++..|+++++.+. ++..++..++++++|++.++|+++..+.+........
T Consensus 235 ~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~---------------- 298 (617)
T 3rg2_A 235 AHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESR---------------- 298 (617)
T ss_dssp TSHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCT----------------
T ss_pred hhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccccc----------------
Confidence 99999874 6778999999999875 8899999999999999999999999887643311000
Q ss_pred hhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCcccc
Q 006197 353 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 432 (657)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~ 432 (657)
..+++||.+++||+++++++.+++.+.++++++|.||+||++..++..........
T Consensus 299 ------------------------~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~ 354 (617)
T 3rg2_A 299 ------------------------AQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKII 354 (617)
T ss_dssp ------------------------TTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHHHH
T ss_pred ------------------------ccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcccccc
Confidence 01248999999999999999999999899999999999999866554433333334
Q ss_pred CccCcCc-cCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCceEEEcCCCcEEEEe
Q 006197 433 GTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIID 510 (657)
Q Consensus 433 ~~~G~~~-~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~i~G 510 (657)
.++|.|+ ++++++|+| +++. +++.|+.|||+|+||+++.||+++++.|.+.| .++||+|||+|++++||.++++|
T Consensus 355 ~~~G~p~~~~~~~~i~d-~~~~--~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~G 431 (617)
T 3rg2_A 355 HTQGYPMCPDDEVWVAD-AEGN--PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQG 431 (617)
T ss_dssp HCCCEESCTTCEEEEEC-TTSC--BCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEE
T ss_pred cCCCccCCCCceEEEEC-CCCC--CCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEe
Confidence 6889997 788999998 6654 55667899999999999999999999999999 79999999999999999999999
Q ss_pred cCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHH
Q 006197 511 RKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQ 587 (657)
Q Consensus 511 R~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (657)
|.||+||+ +|++|+|.+||+.|.+||+|.+|+|++.++. +.++++++..+.. ..
T Consensus 432 R~dd~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~------------------~~---- 488 (617)
T 3rg2_A 432 REKDQINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPL------------------RA---- 488 (617)
T ss_dssp ECSSEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC------------------CH----
T ss_pred ecCCEEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCC------------------CH----
Confidence 99999997 7999999999999999999999999986543 4788888877632 11
Q ss_pred HHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHH
Q 006197 588 NYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQ 647 (657)
Q Consensus 588 ~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i~~ 647 (657)
.++++++++..||.|++|..+++++. +|+|++|||||++|++.+......
T Consensus 489 ----~~l~~~l~~~~lp~~~vP~~~~~v~~------lP~t~~GKidR~~L~~~~~~~~~~ 538 (617)
T 3rg2_A 489 ----VQVRRFLREQGIAEFKLPDRVECVDS------LPLTAVGKVDKKQLRQWLASRASA 538 (617)
T ss_dssp ----HHHHHHHHTTTCCGGGSCSEEEECSC------CCBCTTSSBCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHhCCCccccCCcEEEEecc------cCCCCCCCCcHHHHHHHHhccccc
Confidence 23444444337999999999999765 499999999999999998876554
No 21
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1e-70 Score=614.03 Aligned_cols=475 Identities=19% Similarity=0.149 Sum_probs=385.8
Q ss_pred CcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006197 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (657)
Q Consensus 40 ~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~l 119 (657)
...++.++|+++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus 25 ~~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~l 95 (620)
T 4dg8_A 25 AHPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLL 95 (620)
T ss_dssp GSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 3568999999999999999999975 3 689999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceee
Q 006197 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (657)
Q Consensus 120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 199 (657)
||+++|++++|++|.++.+++.++++.+++++++++........ ....+ ...
T Consensus 96 ailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~--------~~~~~-~~~------------------- 147 (620)
T 4dg8_A 96 AILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN--------GLPCV-PVR------------------- 147 (620)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT--------TSCEE-EGG-------------------
T ss_pred HHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccccc--------CCcee-eec-------------------
Confidence 99999999999999999999999999999999997655332110 00000 000
Q ss_pred HHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 006197 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279 (657)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~ 279 (657)
.. .............++++++|+|||||||.||||+++|+++.+.+.. ...+ .+.++|++++.+|++|..
T Consensus 148 --~~--~~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~~ 217 (620)
T 4dg8_A 148 --HL--PAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-----AFAPQMRFLVNSPLSFDA 217 (620)
T ss_dssp --GC--CCCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-----TTCTTCEEEECSCTTSTH
T ss_pred --cC--CcCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-----CCCCCCEEEEECccCHHH
Confidence 00 0001111223346899999999999999999999999999887765 3333 788999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEecC---ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcC
Q 006197 280 DRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMG 356 (657)
Q Consensus 280 g~~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (657)
++...+.++..|+++++.+. ++..+.+.++++++|+++++|+++..|.+...
T Consensus 218 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~------------------------- 272 (620)
T 4dg8_A 218 ATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP------------------------- 272 (620)
T ss_dssp HHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG-------------------------
T ss_pred HHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh-------------------------
Confidence 98888899999999998752 89999999999999999999999998764200
Q ss_pred CCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCCCCCccccccCCC---cccc
Q 006197 357 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---MCMV 432 (657)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~---~~~~ 432 (657)
..+++||.+++||++++++..+.+.+.+ +++++|.||+||++.+++...... ....
T Consensus 273 --------------------~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~ 332 (620)
T 4dg8_A 273 --------------------DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDD 332 (620)
T ss_dssp --------------------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSS
T ss_pred --------------------hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCC
Confidence 0114899999999999998888776655 889999999999998776543322 2334
Q ss_pred CccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccC--------CccccCceEEEcCCC
Q 006197 433 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID--------GWFHTGDIGQILPNG 504 (657)
Q Consensus 433 ~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~--------g~~~TGDl~~~~~~G 504 (657)
.++|+|+++++++|+| +++. ..++.|+.|||+|+|++++.||+++++.|.+.|.+ +||+|||+|++++||
T Consensus 333 ~~iG~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG 410 (620)
T 4dg8_A 333 IPIGKAIAGTAVLLLD-EHGQ-EIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQG 410 (620)
T ss_dssp CCCBEECTTEEEEEEC-TTSC-BCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTS
T ss_pred CCceecccCcEEEEEC-ccCC-CCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCC
Confidence 7899999999999999 6554 33556789999999999999999999999999943 799999999999999
Q ss_pred cEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCCC--eEEEEEecChhhHHHHHHHCCCCccHHHHhc
Q 006197 505 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS--MLVAVVVPCEEDTKKWAYSNGHAGSFLELCS 582 (657)
Q Consensus 505 ~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~~--~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (657)
+|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.++.. .++++++...+. .
T Consensus 411 ~l~~~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~~~------------------~ 471 (620)
T 4dg8_A 411 RLRFIGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADA------------------S 471 (620)
T ss_dssp CEEEEECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECTTC------------------C
T ss_pred eEEEEccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecChHH------------------H
Confidence 99999999999998 79999999999999999999999999865443 445555433221 0
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHH
Q 006197 583 LVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEID 646 (657)
Q Consensus 583 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i~ 646 (657)
. +.+ ++.||.|++|+.+++++. +|+|++|||+|++|+++|.+.++
T Consensus 472 ----~----~~l-----~~~Lp~y~~P~~~~~v~~------lP~t~~GKidR~~L~~~~~~~~~ 516 (620)
T 4dg8_A 472 ----P----QAL-----LRQLPTWQRPHACVRVEA------LPLTAHGKLDRAALLRRLEEPLE 516 (620)
T ss_dssp ----C----HHH-----HHHSCGGGSCSEEEECSS------CCCC----CCHHHHHHHTCSCC-
T ss_pred ----H----HHH-----HHhChhhcCCcEEEEECc------CCCCcccCHhHHHHhhccccccc
Confidence 0 111 246999999999999765 49999999999999988765443
No 22
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=1.2e-70 Score=605.02 Aligned_cols=494 Identities=16% Similarity=0.142 Sum_probs=394.6
Q ss_pred CcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006197 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (657)
Q Consensus 40 ~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~l 119 (657)
++.++.++|+++++++|+++|+.+. + +++||+||.++++++|.+|++.|+++||+|+++++|++++++++|
T Consensus 2 ~~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~l 72 (521)
T 3l8c_A 2 SLKDMIDSIEQFAQTQADFPVYDCL----G-----ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFV 72 (521)
T ss_dssp CCCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCCcceecC----C-----CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 3578999999999999999999875 3 689999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceee
Q 006197 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (657)
Q Consensus 120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 199 (657)
||+++|++++|+++.++.+++.++++.++++++|++.+....+. .. .++ .
T Consensus 73 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~--------~~-~~~---------------------~ 122 (521)
T 3l8c_A 73 ALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE--------GI-SLV---------------------S 122 (521)
T ss_dssp HHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT--------TS-EEE---------------------E
T ss_pred HHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc--------cC-ccc---------------------c
Confidence 99999999999999999999999999999999999876433211 11 111 1
Q ss_pred HHHHHhcC--ccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhH
Q 006197 200 WDEFLHLG--KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277 (657)
Q Consensus 200 ~~~l~~~~--~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~ 277 (657)
+.++.... ...........++++++|+|||||||.||+|++||+++.+.+....... ...+..++++++..|++|
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~ 199 (521)
T 3l8c_A 123 LSEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA---AFDVPKQPQMLAQPPYSF 199 (521)
T ss_dssp HHHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT---TTCCCSSCEEECCSCTTS
T ss_pred hhhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc---ccCCCCCCeEEecCCccH
Confidence 11111110 0111223345789999999999999999999999999998777654431 126789999999999999
Q ss_pred HHHHHHHHHHHhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHh
Q 006197 278 ILDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWM 353 (657)
Q Consensus 278 ~~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (657)
..+....+.++..|+++++.+. ++..+++.+.++++|++.++|+++..+.....
T Consensus 200 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------- 257 (521)
T 3l8c_A 200 DLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD---------------------- 257 (521)
T ss_dssp GGGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT----------------------
T ss_pred HHHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc----------------------
Confidence 8888778888999999998764 78999999999999999999999987653110
Q ss_pred hcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCCCCCccccccCCC----
Q 006197 354 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---- 428 (657)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~---- 428 (657)
.. ...++++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++......
T Consensus 258 ------------~~--------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 317 (521)
T 3l8c_A 258 ------------FC--------QAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVD 317 (521)
T ss_dssp ------------CS--------TTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHH
T ss_pred ------------cc--------cccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeeccccccc
Confidence 00 01125899999999999999999998888 899999999999998776544322
Q ss_pred ccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccc----cCCccccCceEEEcCCC
Q 006197 429 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI----IDGWFHTGDIGQILPNG 504 (657)
Q Consensus 429 ~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~----~~g~~~TGDl~~~~~~G 504 (657)
....+++|+|+++++++|+| +++. +++.|+.|||+|+||+++.|||++++.+.+.| .+|||+|||+|++|++|
T Consensus 318 ~~~~~~vG~p~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG 394 (521)
T 3l8c_A 318 NYTRLPIGYPKPDSPTYIID-EDGK--ELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDN 394 (521)
T ss_dssp HCSSCEEEEECTTSCEEEEC-TTSC--BCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSS
T ss_pred CCCccccccccCCCEEEEEC-CCcC--CCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCC
Confidence 12346899999999999999 6654 45567899999999999999999999999988 35799999999999999
Q ss_pred cEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC----CeEEEEEecChhhHHHHHHHCCCCccHHHH
Q 006197 505 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK----SMLVAVVVPCEEDTKKWAYSNGHAGSFLEL 580 (657)
Q Consensus 505 ~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~----~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~ 580 (657)
++++.||.||+||+ +|++|+|.+||++|.+||+|.+|+|++..+. +.++|+|++.++....
T Consensus 395 ~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~-------------- 459 (521)
T 3l8c_A 395 ILLYGGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKER-------------- 459 (521)
T ss_dssp CEEEEEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGG--------------
T ss_pred eEEEeCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccc--------------
Confidence 99999999999997 7999999999999999999999999986532 4788999988753100
Q ss_pred hccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006197 581 CSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI 645 (657)
Q Consensus 581 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i 645 (657)
.+. ...+.+.|+++++ ++||.|++|+.|+++++. |+|++|||+|++|+++++++-
T Consensus 460 -~~~--~~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~l------P~t~~GKidr~~L~~~~~~~~ 514 (521)
T 3l8c_A 460 -FDR--ELELTKAIKASVK-DHMMSYMMPSKFLYRDSL------PLTPNGKIDIKTLINEVNNRE 514 (521)
T ss_dssp -CSS--HHHHHHHHHHHSG-GGSCGGGSCSEEEECSSC------CBCTTSSBCHHHHHHHTC---
T ss_pred -ccc--chhhHHHHHHHHH-hhCccccCCeEEEEeccc------CCCCCcCccHHHHhhhhhcCC
Confidence 000 1123455666665 789999999999997654 999999999999999987643
No 23
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=2.3e-70 Score=606.27 Aligned_cols=475 Identities=20% Similarity=0.225 Sum_probs=390.7
Q ss_pred CcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006197 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (657)
Q Consensus 40 ~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~l 119 (657)
...++.++|.++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus 37 ~~~~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 107 (563)
T 1amu_A 37 RDKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGIL 107 (563)
T ss_dssp TTCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHCCCCeEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 3568999999999999999999874 3 689999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceee
Q 006197 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (657)
Q Consensus 120 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 199 (657)
||+++|++++|+++.++.+++.++++.++++++|++......+.... ....+..+....
T Consensus 108 A~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~-----~~~~~~~~~~~~---------------- 166 (563)
T 1amu_A 108 AVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ-----FNGQVEIFEEDT---------------- 166 (563)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC-----CCSEEEECCCST----------------
T ss_pred HHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhcc-----ccCceeeecchh----------------
Confidence 99999999999999999999999999999999999987655432211 111222222210
Q ss_pred HHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 006197 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279 (657)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~ 279 (657)
+ ... .......+..++++++|+|||||||.||||++||+++.+.+......+ ++.++|++++.+|++|..
T Consensus 167 ~----~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~ 236 (563)
T 1amu_A 167 I----KIR-EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDA 236 (563)
T ss_dssp T----TTS-CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTH
T ss_pred h----ccc-cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHH
Confidence 0 000 111112334678999999999999999999999999998887766665 789999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhc
Q 006197 280 DRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNM 355 (657)
Q Consensus 280 g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (657)
++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..+...
T Consensus 237 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-------------------------- 290 (563)
T 1amu_A 237 SVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE-------------------------- 290 (563)
T ss_dssp HHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT--------------------------
T ss_pred HHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc--------------------------
Confidence 88777889999999998764 789999999999999999999998765310
Q ss_pred CCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCC--ccccC
Q 006197 356 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--MCMVG 433 (657)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~--~~~~~ 433 (657)
..+++|.+++||+++++++.+.+.+ .+++++.||+||++..++...... .....
T Consensus 291 ----------------------~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~ 346 (563)
T 1amu_A 291 ----------------------RILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGHSV 346 (563)
T ss_dssp ----------------------TCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCSSC
T ss_pred ----------------------ccccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecccccCCCCC
Confidence 0148999999999999999999977 478999999999998766544322 22347
Q ss_pred ccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhcccc-------CCccccCceEEEcCCCcE
Q 006197 434 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNGVV 506 (657)
Q Consensus 434 ~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~-------~g~~~TGDl~~~~~~G~l 506 (657)
++|+|+++++++|+| +++. +++.|+.|||+|+||+++.|||++++.|.+.|. ++||+|||+|++|+||++
T Consensus 347 ~vG~p~~~~~v~i~d-~~~~--~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l 423 (563)
T 1amu_A 347 PIGAPIQNTQIYIVD-ENLQ--LKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNI 423 (563)
T ss_dssp CCBEECTTEEEEEEC-TTSC--BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCE
T ss_pred cccceeCCCEEEEEC-CCcC--CCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeE
Confidence 899999999999999 6654 455678999999999999999999999999883 359999999999999999
Q ss_pred EEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhcc
Q 006197 507 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL 583 (657)
Q Consensus 507 ~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (657)
+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.++. +.++|+|++..+. ..
T Consensus 424 ~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~------------------~~ 484 (563)
T 1amu_A 424 EYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHI------------------PL 484 (563)
T ss_dssp EEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCC------------------CH
T ss_pred EEeccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCCC------------------CH
Confidence 999999999997 8999999999999999999999999987653 4788888876421 11
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 006197 584 VQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY 641 (657)
Q Consensus 584 ~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~ 641 (657)
++|+++++ ++||.|++|+.|+++++. |+|++||++|++|++.+
T Consensus 485 --------~~l~~~l~-~~L~~y~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 485 --------EQLRQFSS-EELPTYMIPSYFIQLDKM------PLTSNGKIDRKQLPEPD 527 (563)
T ss_dssp --------HHHHHHHH-HHSCGGGSCSEEEECSSC------CBCTTSSBCGGGSCCCC
T ss_pred --------HHHHHHHH-hhCchhhCCcEEEEeccc------CCCCCcChhHHhcCCcc
Confidence 23344443 579999999999997664 99999999999998754
No 24
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=9.2e-71 Score=602.88 Aligned_cols=491 Identities=22% Similarity=0.208 Sum_probs=373.4
Q ss_pred cHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHH
Q 006197 43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN 122 (657)
Q Consensus 43 ~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~~ 122 (657)
||.++|+++++++||++|+++. + +++||+||.++++++|++|++. +||+|+++++|++++++++|||+
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~ 69 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACW 69 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHH
Confidence 6778999999999999999875 3 5899999999999999999986 89999999999999999999999
Q ss_pred hcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcce-eeHH
Q 006197 123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP-YSWD 201 (657)
Q Consensus 123 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~ 201 (657)
++|++++|+++.++.+++.++++.++++++|++............ ......+.......... ........ ....
T Consensus 70 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 144 (501)
T 3ipl_A 70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS--LDDIEFAGRDITTNGLL---DNTMGIQYDTSNE 144 (501)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE--TTC------------------------------
T ss_pred HcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc--cccceeeeeeccccccc---ccccccccccchh
Confidence 999999999999999999999999999999999876543322111 01111111000000000 00000000 0011
Q ss_pred HHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHH
Q 006197 202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281 (657)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~ 281 (657)
.................++++++|+|||||||.||+|++||+++.+.+......+ ++.++|++++.+|++|.+++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~ 219 (501)
T 3ipl_A 145 TVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----GFDRDTNWLSVLPIYHISGL 219 (501)
T ss_dssp -----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----CCCTTCEEEECSCTTSHHHH
T ss_pred hccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----CCCccCEEEEeCcHHHHHHH
Confidence 1111111111122345789999999999999999999999999999988877766 78999999999999999999
Q ss_pred HHHHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCC
Q 006197 282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQR 360 (657)
Q Consensus 282 ~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (657)
...+.++..|+++++.+. ++..+++.++++++|+++++|+++..|.+....
T Consensus 220 ~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------------------- 271 (501)
T 3ipl_A 220 SVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH---------------------------- 271 (501)
T ss_dssp HHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC----------------------------
T ss_pred HHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC----------------------------
Confidence 888889999999999876 999999999999999999999999988653110
Q ss_pred CcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCC-ccccCccCcCc
Q 006197 361 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVS 439 (657)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~-~~~~~~~G~~~ 439 (657)
...+||.+++||+++++++.+.+.+ +++++++.||+||+++.++...... ....+++|.|+
T Consensus 272 -----------------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~ 333 (501)
T 3ipl_A 272 -----------------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPS 333 (501)
T ss_dssp -----------------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEEC
T ss_pred -----------------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCCCCC
Confidence 0027899999999999999999987 5999999999999987655443322 33458999999
Q ss_pred cCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCCcEEEEecCcceeecC
Q 006197 440 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 519 (657)
Q Consensus 440 ~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~ 519 (657)
++++++|+| ++ .++.|||+|+|+.++.||+++++.+.. |.+|||+|||+|++|++|+++++||.||+||+
T Consensus 334 ~~~~~~i~d-~~-------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~- 403 (501)
T 3ipl_A 334 ANVDVKIKN-PN-------KEGHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTGDIAEIDHEGYVMIYDRRKDLIIS- 403 (501)
T ss_dssp TTCEEEEES-CC-------SSCCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEEEEEEECTTSCEEEEEECCCCEEC-
T ss_pred CCcEEEEec-CC-------CCCccEEEEeccchhhhhCcChhhcch-hcCCceecCCEEEEcCCCeEEEEccccceEEE-
Confidence 999999998 43 235799999999999999999998887 88999999999999999999999999999996
Q ss_pred CceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHH
Q 006197 520 QGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKN 596 (657)
Q Consensus 520 ~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 596 (657)
+|++|+|.+||++|.+||+|.+|+|++.+++ +.++++++...+. +. ++|++
T Consensus 404 ~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~------------------~~--------~~l~~ 457 (501)
T 3ipl_A 404 GGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDI------------------SK--------AQLIA 457 (501)
T ss_dssp SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC------------------CH--------HHHHH
T ss_pred CCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCC------------------CH--------HHHHH
Confidence 8999999999999999999999999986644 3678888765432 11 23344
Q ss_pred HHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006197 597 AAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 644 (657)
Q Consensus 597 ~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~ 644 (657)
+++ ++||.|++|+.|+++++. |+|++|||+|++|++.+.++
T Consensus 458 ~l~-~~L~~~~~P~~i~~v~~l------P~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 458 YLS-KHLAKYKVPKHFEKVDTL------PYTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp HHH-HHSCGGGSCSEEEECSSC------C-------------------
T ss_pred HHH-hhCccccCCCEEEEeccc------CCCCCCCEeHHHHhhccccc
Confidence 443 579999999999997654 99999999999999988764
No 25
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=1.5e-70 Score=646.68 Aligned_cols=540 Identities=24% Similarity=0.302 Sum_probs=345.4
Q ss_pred CCCCCCCCceeccccCCCCCCCCCCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHH
Q 006197 16 DGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA 95 (657)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~ 95 (657)
.+.+..+.+|++......+ +...++.++|+++++++||++|+++. +.. +++||+||.++++++|++|++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~----p~~~tl~~~l~~~a~~~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~ 107 (979)
T 3tsy_A 39 SNNNNSDVIFRSKLPDIYI----PNHLSLHDYIFQNISEFATKPCLING---PTG----HVYTYSDVHVISRQIAANFHK 107 (979)
T ss_dssp ------CCCBCCSSCCCCC----CTTSCHHHHHTTTGGGTTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCceeecCCCCCCC----CCCCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHH
Confidence 3445556677776443333 34579999999999999999999875 322 689999999999999999999
Q ss_pred cCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceE
Q 006197 96 SGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRV 175 (657)
Q Consensus 96 ~G~~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~ 175 (657)
.|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.++++.++++++|++....+.+...... .. ..
T Consensus 108 ~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~--~~-~~ 184 (979)
T 3tsy_A 108 LGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQND--DG-VV 184 (979)
T ss_dssp TTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHT--SC-CE
T ss_pred cCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhc--CC-ce
Confidence 9999999999999999999999999999999999999999999999999999999999998876554332211 11 23
Q ss_pred EEEecCCcHHHHHHHhhCCcceeeHHHHHhcCcc--CCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhh
Q 006197 176 MVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV--NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253 (657)
Q Consensus 176 i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~ 253 (657)
++.+++... .........+.++...... ...+.....++++++|+|||||||.||+|+++|+++.+.+....
T Consensus 185 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~ 258 (979)
T 3tsy_A 185 IVCIDDNES------VPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQV 258 (979)
T ss_dssp EEECCCCTT------SCCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHH
T ss_pred EEEeCCccc------ccCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHH
Confidence 444443211 0011223455555433221 12233346789999999999999999999999999998876643
Q ss_pred hhcccccCCCCCCcEEEEecChhHHHHHHH-HHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHH
Q 006197 254 LFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIK 331 (657)
Q Consensus 254 ~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~ 331 (657)
.... ....+.++|++++.+|++|.+++.. .+.++..|+++++.+. ++..+++.++++++|++.++|+++..|.+...
T Consensus 259 ~~~~-~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 337 (979)
T 3tsy_A 259 DGEN-PNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSE 337 (979)
T ss_dssp CSSS-CSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGG
T ss_pred Hhhc-ccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcc
Confidence 3211 0125788999999999999999865 5667999999999876 89999999999999999999999988864311
Q ss_pred HHHHhhchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceee
Q 006197 332 KALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQ 410 (657)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~ 410 (657)
... ..+++||.+++||+++++++.+++.+.+ ++++++
T Consensus 338 ----------------------------------~~~--------~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~ 375 (979)
T 3tsy_A 338 ----------------------------------TEK--------YDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQ 375 (979)
T ss_dssp ----------------------------------GGT--------SCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEE
T ss_pred ----------------------------------ccC--------CCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEe
Confidence 000 1125899999999999999999999988 899999
Q ss_pred eccCCCCCCcccccc----CCCccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhcc
Q 006197 411 GYGLTETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRES 486 (657)
Q Consensus 411 ~yG~tE~~~~~~~~~----~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~ 486 (657)
.||+||++.+++.+. .......+++|.|+++++++|+| ++++ .+++.|+.|||+|+||+++.||+++++.|.+.
T Consensus 376 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~ 453 (979)
T 3tsy_A 376 GYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVD-PDTG-DSLSRNQPGEICIRGHQIMKGYLNNPAATAET 453 (979)
T ss_dssp CEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEEC-TTSC-CBCCTTCCEEEEEESTTSCSEETTCHHHHHHH
T ss_pred eechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEe-CCCC-CCCCCCCccEEEEECCCccccccCChhhhhhh
Confidence 999999998765542 12233458999999999999999 4433 45667789999999999999999999999999
Q ss_pred c-cCCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChh
Q 006197 487 I-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEE 562 (657)
Q Consensus 487 ~-~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~ 562 (657)
| .+|||+|||+|++|++|+++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.++
T Consensus 454 f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~ 532 (979)
T 3tsy_A 454 IDKDGWLHTGDIGLIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKD 532 (979)
T ss_dssp BCTTSCEEEEEEEEECTTSCEEEEEESCC---------------------------------------------------
T ss_pred ccCCCcEEcCCEEEEcCCceEEEecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCC
Confidence 9 7999999999999999999999999999998 7999999999999999999999999986653 478888887654
Q ss_pred hHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006197 563 DTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ 642 (657)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~ 642 (657)
... . .++|+++++ ++||.|++|+.++++++ +|+|++|||+|++|+++|.
T Consensus 533 ~~~----------------~--------~~~l~~~l~-~~l~~~~~p~~i~~v~~------lP~t~~GKi~r~~L~~~~~ 581 (979)
T 3tsy_A 533 SEL----------------S--------EDDVKQFVS-KQVVFYKRINKVFFTES------IPKAPSGKILRKDLRAKLA 581 (979)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCC----------------C--------HHHHHHHHH-HhcccccCCeEEEEeCC------cCcCCCCCeeHHHHHHHHH
Confidence 210 0 123444443 78999999999988765 4999999999999999999
Q ss_pred HHHHHHHhhh
Q 006197 643 VEIDQLYEKL 652 (657)
Q Consensus 643 ~~i~~ly~~~ 652 (657)
+.+...|...
T Consensus 582 ~~~~~~~~~~ 591 (979)
T 3tsy_A 582 NGLGSGMASV 591 (979)
T ss_dssp -------CCH
T ss_pred hhcCCccccc
Confidence 9998888754
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=4.7e-70 Score=596.43 Aligned_cols=476 Identities=25% Similarity=0.286 Sum_probs=372.0
Q ss_pred CcCcHHHHHHHHHHcCCC-CCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006197 40 DLNTAWDIFSMSVQKYPG-NRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (657)
Q Consensus 40 ~~~~i~~~l~~~a~~~p~-~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~ 118 (657)
.+.++.+.|.++++++|+ ++|+++. + +++||+||.++++++|.+|. .|++|+++++|++++++++
T Consensus 20 ~~~tl~~~l~~~a~~~p~d~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~ 85 (505)
T 3nyq_A 20 HMSSLFPALSPAPTGAPADRPALRFG----E-----RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAV 85 (505)
T ss_dssp ----CCTTTSSCCCSGGGGSEEEEET----T-----EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHH
T ss_pred ccchhHHHHHHHHHhCCCCCeEEEEC----C-----eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHH
Confidence 477899999999999887 9999875 3 78999999999999998775 3889999999999999999
Q ss_pred HHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCccee
Q 006197 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (657)
Q Consensus 119 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 198 (657)
|||+++|++++|++|.++.+++.++++.++++++|++.+... .........+ ..+..
T Consensus 86 la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~------~~~~~~~~~~-~~~~~---------------- 142 (505)
T 3nyq_A 86 VAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL------PPALGALERV-DVDVR---------------- 142 (505)
T ss_dssp HHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC------CGGGTTSEEE-ECCTT----------------
T ss_pred HHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc------chhhcccccc-ccccc----------------
Confidence 999999999999999999999999999999999999865211 0011111111 11100
Q ss_pred eHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHH
Q 006197 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (657)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~ 278 (657)
.....+.....++++++|+|||||||.||+|++||+++.+.+..+...+ ++.++|++++.+|++|.
T Consensus 143 ---------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~ 208 (505)
T 3nyq_A 143 ---------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----QWTGEDVLVQGLPLFHV 208 (505)
T ss_dssp ---------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECCCTTSH
T ss_pred ---------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----CCCCCcEEEEeccHHHH
Confidence 0111223345688999999999999999999999999999998887777 78999999999999999
Q ss_pred HHHHH-HHHHHhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcC
Q 006197 279 LDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMG 356 (657)
Q Consensus 279 ~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (657)
+++.. .+.++..|+++++.+. ++..+++.+ ++++|+++++|+++..+.+.+.....
T Consensus 209 ~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~--------------------- 266 (505)
T 3nyq_A 209 HGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPE--------------------- 266 (505)
T ss_dssp HHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHH---------------------
T ss_pred HHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCch---------------------
Confidence 99875 6778999999998876 888899998 88999999999999998764321100
Q ss_pred CCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccCccC
Q 006197 357 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG 436 (657)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G 436 (657)
....+ +++|.+++||+++++++.+++.+.++.++++.||+||+++.++..... ....+++|
T Consensus 267 ----------~~~~l--------~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~-~~~~~~vG 327 (505)
T 3nyq_A 267 ----------LAKAL--------AGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADG-EPRAGTVG 327 (505)
T ss_dssp ----------HHHHH--------HHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTS-CCCTTCCC
T ss_pred ----------hhccc--------ccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCC-CCCCCCcc
Confidence 00011 378999999999999999999998999999999999998776655443 33448999
Q ss_pred cCccCeeEEEeecCCCCCCCC-CCCCCceEEEccCCcccccCCCchhhhccc-cCCccccCceEEEcCCCcEEEEecC-c
Q 006197 437 PVSVYSELRLEEVPEMGYSPL-DDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRK-K 513 (657)
Q Consensus 437 ~~~~~~~~~iv~~~~~~~~~~-~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~i~GR~-~ 513 (657)
+|+++++++|+| +++..++. +.|+.|||+|+|++++.||+++++.|.+.| .+|||+|||+|++|+||+++++||. |
T Consensus 328 ~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d 406 (505)
T 3nyq_A 328 VPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKAT 406 (505)
T ss_dssp EECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSC
T ss_pred cCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccC
Confidence 999999999999 77765554 447899999999999999999999999999 6999999999999999999999998 5
Q ss_pred ceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHH
Q 006197 514 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYI 590 (657)
Q Consensus 514 d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (657)
|+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.++.. .. .
T Consensus 407 ~~ik~-~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~---------~~------~-------- 462 (505)
T 3nyq_A 407 DLIKS-GGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAA---------PP------A-------- 462 (505)
T ss_dssp CCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTS---------CC------C--------
T ss_pred ceEEe-CCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCC---------CC------C--------
Confidence 89997 8999999999999999999999999986653 48999999875320 00 0
Q ss_pred HHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006197 591 LSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI 639 (657)
Q Consensus 591 ~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~ 639 (657)
.++|+++++ ++||.|++|+.|+++++. |+|++|||+|++|++
T Consensus 463 ~~~l~~~l~-~~L~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 463 LGTLADHVA-ARLAPHKRPRVVRYLDAV------PRNDMGKIMKRALNR 504 (505)
T ss_dssp HHHHHHHHH-HHTCGGGSCSEEEECSCC------CC-------------
T ss_pred HHHHHHHHH-hhCCCCcCccEEEEECCC------CCCCCcCeeHHhhcc
Confidence 123444443 579999999999997654 999999999999986
No 27
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=8.9e-69 Score=595.39 Aligned_cols=519 Identities=16% Similarity=0.137 Sum_probs=319.2
Q ss_pred CCcCcHHHHHHHHHHcCCCCCceeeecccCC----CCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH
Q 006197 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG----KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW 114 (657)
Q Consensus 39 ~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~----~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~ 114 (657)
....++.++|+++|+++||++|+++. ++ .....+++||+||.++++++|++|++.|+ +||+|+++++|++++
T Consensus 17 ~~~~tl~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~ 92 (562)
T 3ite_A 17 TSTVPPSHYIETWAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA 92 (562)
T ss_dssp -CCCCTTHHHHHHHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH
T ss_pred cccCCHHHHHHHHHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH
Confidence 45678999999999999999999876 32 12234789999999999999999999999 799999999999999
Q ss_pred HHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCC
Q 006197 115 VEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 194 (657)
Q Consensus 115 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 194 (657)
++++|||+++|++++|+++.++.+++.++++.++++++|++......... .....++.....
T Consensus 93 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~------~~~~~~~~~~~~------------ 154 (562)
T 3ite_A 93 FAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVEL------PPETKVLDTKNQ------------ 154 (562)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCC------CTTCEEEETTCH------------
T ss_pred HHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccccc------Cccceeecccch------------
Confidence 99999999999999999999999999999999999999998765543211 111122221111
Q ss_pred cceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcc---cccCCCCCCcEEEE
Q 006197 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD---QFEDKMTVDDVYLS 271 (657)
Q Consensus 195 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~---~~~~~~~~~d~~l~ 271 (657)
.+.+...... .........++++++|+|||||||.||+|++||+++.+.+..+...+. .....+...+++++
T Consensus 155 ----~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (562)
T 3ite_A 155 ----SFIENLSTQD-TSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLC 229 (562)
T ss_dssp ----HHHHHHHHSC-CSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEEC
T ss_pred ----hhhhhccccc-ccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEE
Confidence 1222222211 112223446788999999999999999999999999988776544321 11125788899999
Q ss_pred ecChhHHHHHHHHHHHHhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 006197 272 FLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALK 349 (657)
Q Consensus 272 ~~pl~~~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 349 (657)
..|+.|..++...+.++..|+++++.+. .+..+.+.++++++|++.++|+++..+...
T Consensus 230 ~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~-------------------- 289 (562)
T 3ite_A 230 LASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV-------------------- 289 (562)
T ss_dssp CSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC--------------------
T ss_pred ecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC--------------------
Confidence 9999998888778889999999988764 457888999999999999999987664210
Q ss_pred HHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCc
Q 006197 350 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM 429 (657)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~ 429 (657)
+ ..+++||.+++||+++++++.+.+.+.+++++++.||+||+++.++.......
T Consensus 290 --------------~------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~ 343 (562)
T 3ite_A 290 --------------P------------EDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPD 343 (562)
T ss_dssp --------------G------------GGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTT
T ss_pred --------------c------------cccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCC
Confidence 0 01258999999999999999999998889999999999999987777665554
Q ss_pred cccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCC--ccccCceEEEcCCCcEE
Q 006197 430 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG--WFHTGDIGQILPNGVVK 507 (657)
Q Consensus 430 ~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g--~~~TGDl~~~~~~G~l~ 507 (657)
...+++|+|++++++++++ ++++ .+++.|+.|||+|+||+++.|||++++.+...+.+| ||+|||+|++|+||+++
T Consensus 344 ~~~~~~G~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~ 421 (562)
T 3ite_A 344 SDTRCIGHPLGDSVAHVLA-PGSN-EHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSIL 421 (562)
T ss_dssp SCTTEEEEECTTCEEEEEC-TTSS-CBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTSCEE
T ss_pred CCCccccccCCCCeEEEEe-CCCC-CCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCCeEE
Confidence 5558999999999999998 4433 456677899999999999999999999988777777 99999999999999999
Q ss_pred EEecCcceeecCCceeeccHHHHHHHhcC-cccceEEEEecCCCC---eEEEEEecChhhHHHHHHHCCCCccHHHHhcc
Q 006197 508 IIDRKKNLIKISQGEYVALEYLENVYCVA-PIIEDIWVYGDSLKS---MLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL 583 (657)
Q Consensus 508 i~GR~~d~i~~~~G~~v~~~~iE~~l~~~-~~V~~~~vv~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (657)
++||.||+||+ +|++|+|.+||++|.+| |.+.+++|++.+++. ..++.++...+... ..++.. .
T Consensus 422 ~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~~~-~-- 489 (562)
T 3ite_A 422 FLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAV--------RGELRW-I-- 489 (562)
T ss_dssp EEEEC---------------------------------------------------------------------------
T ss_pred EEccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccc--------cccccc-c--
Confidence 99999999997 89999999999999998 888899888766542 33333333322110 000000 0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccc-cccccchHHHHHHHHHH-HHHHHhh
Q 006197 584 VQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVT-ATLKKKRNKLLIYYQVE-IDQLYEK 651 (657)
Q Consensus 584 ~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t-~~GKv~r~~l~~~~~~~-i~~ly~~ 651 (657)
.+-...+.++|+++++ ++||.|++|+.|+++++. |+| ++||++|++|+++|++. .+.++..
T Consensus 490 ~~~~~~~~~~l~~~~~-~~L~~y~~P~~i~~v~~l------P~t~~~GKi~r~~L~~~~~~~~~~~~~~~ 552 (562)
T 3ite_A 490 NENYKEINNSLRQACE-QTLPAYMVPDFIIPISFI------PLRDTSAKTDAKALEHMFHTLSLGELFGE 552 (562)
T ss_dssp ----------------------------------------------------------------------
T ss_pred ccchhhHHHHHHHHHH-hhCCcccCCcEEEEeccC------CCCCCCCcchHHHHHHHHhccCHHHHhcc
Confidence 0111233456677775 789999999999987664 998 89999999999999863 4555543
No 28
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=2.7e-67 Score=586.19 Aligned_cols=515 Identities=18% Similarity=0.215 Sum_probs=401.9
Q ss_pred cCCCCCCCCCCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeC
Q 006197 30 ASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA 109 (657)
Q Consensus 30 ~~~~~~~~~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~ 109 (657)
..+.+|...+...++.++|+++++++|+.+++... ....+++||+||.++++++|++|+++|+++||+|+++++
T Consensus 9 ~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~~~~~~------~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ 82 (576)
T 3gqw_A 9 FTHSLPMRYADFPTLVDALDYAALSSAGMNFYDRR------CQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAE 82 (576)
T ss_dssp -----CCCCSCCSSHHHHHHHHTTSSCEEEEECTT------SCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECC
T ss_pred hcCCCCcccCCCCcHHHHHHHHhhCCCCeEEeCCC------CCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcC
Confidence 34567777788999999999999999998877432 222378999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhcCCEEEeccCCCC-------hhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCC
Q 006197 110 NCPQWVEAMEACNALSLICVPLYDTLG-------PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182 (657)
Q Consensus 110 n~~e~~~~~lA~~~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 182 (657)
|++++++++|||+++|++++|+++.++ .+++.++++.++++++|++.+....+...... ..... +
T Consensus 83 ~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-~~~~~-~------ 154 (576)
T 3gqw_A 83 TSSEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHD-NPELH-V------ 154 (576)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGG-CTTCE-E------
T ss_pred CcHHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhcc-CCcce-e------
Confidence 999999999999999999999999998 78999999999999999998876654332211 11111 1
Q ss_pred cHHHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhh-cccccC
Q 006197 183 TAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF-LDQFED 261 (657)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~-~~~~~~ 261 (657)
..... ...............++++++|+|||||||.||+|+++|+++.+++...... +
T Consensus 155 ---------------~~~~~-~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~----- 213 (576)
T 3gqw_A 155 ---------------LSHAW-FKALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGI----- 213 (576)
T ss_dssp ---------------EEHHH-HHTSCCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTS-----
T ss_pred ---------------cchhh-hhcccccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhccc-----
Confidence 11111 1111122223334568999999999999999999999999999888775443 3
Q ss_pred CCCCCcEEEEecChhHHHHHHH-HHHHHhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHH
Q 006197 262 KMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALE 335 (657)
Q Consensus 262 ~~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~ 335 (657)
++.++|++++.+|++|.+++.. .+.++..|+++++... ++..+++.++++++|+++++|+++..+.+.+....
T Consensus 214 ~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~- 292 (576)
T 3gqw_A 214 KLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKD- 292 (576)
T ss_dssp CCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHH-
T ss_pred CCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccc-
Confidence 7899999999999999999875 5667889999888763 78899999999999999999999987754322111
Q ss_pred hhchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc------CCcee
Q 006197 336 ELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC------CAFLV 409 (657)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~------~~~v~ 409 (657)
.....++++|.+++||+++++++.+++.+.+ +..++
T Consensus 293 --------------------------------------~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~ 334 (576)
T 3gqw_A 293 --------------------------------------LAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFM 334 (576)
T ss_dssp --------------------------------------HTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEE
T ss_pred --------------------------------------cccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCccccc
Confidence 1111235899999999999999999999887 67899
Q ss_pred eeccCCCCCCccccccCCCc---------------------------cccCccCcCccCeeEEEeecCCCCCCCCCCCCC
Q 006197 410 QGYGLTETCGPTTVCFPDEM---------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC 462 (657)
Q Consensus 410 ~~yG~tE~~~~~~~~~~~~~---------------------------~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~ 462 (657)
+.||+||+++.++....... ....++|+|+++++++|+| +++. +++.|+.
T Consensus 335 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~--~~~~g~~ 411 (576)
T 3gqw_A 335 PCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAGM--PVAERVV 411 (576)
T ss_dssp EEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTSC--BCCTTBC
T ss_pred ccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-CCCC--CCCCCCe
Confidence 99999999987776532210 0113789999999999998 6654 4556789
Q ss_pred ceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHHhcCcccceE
Q 006197 463 GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDI 542 (657)
Q Consensus 463 GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~ 542 (657)
|||+|+||+++.||+++++.+.+.+.+|||+|||+|++ +||+++++||.||+||+ +|++|+|.+||++|.+||+|.++
T Consensus 412 GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~ 489 (576)
T 3gqw_A 412 GHICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYL-LDGYLYVTGRIKDLIII-RGRNIWPQDIEYIAEQEPEIHSG 489 (576)
T ss_dssp EEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEE-ETTEEEEEEETTTCEEE-TTEEECHHHHHHHHTTSSSCCTT
T ss_pred EEEEEeCccccccccCCccccccccCCCeeeccceEEE-ECCEEEEEecCcceEEE-CCEEECHHHHHHHHHhCcccccc
Confidence 99999999999999999998888789999999999999 79999999999999998 89999999999999999999987
Q ss_pred EEEecCCC-CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCC
Q 006197 543 WVYGDSLK-SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDM 621 (657)
Q Consensus 543 ~vv~~~~~-~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~ 621 (657)
+|++..+. +..+++++..... ....+.+.+.+.+.+ .+.|++|..+.+++ .
T Consensus 490 ~vv~~~~~~~~~~~~~~~~~~~--------------------~~~~~~l~~~l~~~l----~~~~~~p~~i~~v~----~ 541 (576)
T 3gqw_A 490 DAIAFVTAQEKIILQIQCRISD--------------------EERRGQLIHALAARI----QSEFGVTAAIDLLP----P 541 (576)
T ss_dssp SEEEEECTTSCEEEEEECCCCC--------------------HHHHHHHHHHHHHHH----HHHHSCCEEEEEEC----S
T ss_pred cEEEEEcCCccEEEEEEEecCc--------------------hhHHHHHHHHHHHHH----HHHhCCceeEEEEC----C
Confidence 77764333 3444444444321 112223333333222 14678888888875 2
Q ss_pred CCCccccccccchHHHHHHHHHHHHHHHhh
Q 006197 622 ERDLVTATLKKKRNKLLIYYQVEIDQLYEK 651 (657)
Q Consensus 622 ~~~P~t~~GKv~r~~l~~~~~~~i~~ly~~ 651 (657)
+.+|+|++||++|++|+++|++.+++.|..
T Consensus 542 ~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~ 571 (576)
T 3gqw_A 542 HSIPRTSSGKPARAEAKKRYQKAYAASLNV 571 (576)
T ss_dssp SCSCBCTTSSBCHHHHHHHHHHHHTCC---
T ss_pred CCcCcCCCccchHHHHHHHHHHHhhhccch
Confidence 356999999999999999999998877754
No 29
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=1.4e-67 Score=590.04 Aligned_cols=504 Identities=17% Similarity=0.187 Sum_probs=394.3
Q ss_pred CCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006197 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (657)
Q Consensus 39 ~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~ 118 (657)
.+..++.++|+++++++||++|+++. ++ +..+++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~ 82 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAF 82 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHH
Confidence 45679999999999999999999986 42 22379999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEEeccCCCC---hhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCc
Q 006197 119 EACNALSLICVPLYDTLG---PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195 (657)
Q Consensus 119 lA~~~~G~~~v~l~~~~~---~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 195 (657)
|||+++|++++|++|..+ .+++.++++.+++++++++.+....+........+....+...
T Consensus 83 lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 146 (590)
T 3kxw_A 83 LGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAI---------------- 146 (590)
T ss_dssp HHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEE----------------
T ss_pred HHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccccccee----------------
Confidence 999999999999999884 5789999999999999999887766543221111111111111
Q ss_pred ceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecCh
Q 006197 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275 (657)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl 275 (657)
..+.+... ...........++++++|+|||||||.||+|++||+++.+.+......+ ++.++|++++.+|+
T Consensus 147 ---~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~ 217 (590)
T 3kxw_A 147 ---ALESIELN-RSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----HMNDETIIFSWLPP 217 (590)
T ss_dssp ---EGGGCCGG-GGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCT
T ss_pred ---echhcccc-ccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----CCCCcCeEEEecCC
Confidence 11111000 0112223455789999999999999999999999999999998887777 88999999999999
Q ss_pred hHHHHHHH-HHHHHhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 006197 276 AHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALK 349 (657)
Q Consensus 276 ~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 349 (657)
+|.+++.. .+.+++.|+++++.+. ++..+++.|+++++|++.++|.++..+.+.+....
T Consensus 218 ~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--------------- 282 (590)
T 3kxw_A 218 HHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEK--------------- 282 (590)
T ss_dssp TSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGG---------------
T ss_pred CcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhh---------------
Confidence 99999986 7778999999998864 78999999999999999999999988865322110
Q ss_pred HHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcC------CceeeeccCCCCCCcccc
Q 006197 350 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGLTETCGPTTV 423 (657)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~------~~v~~~yG~tE~~~~~~~ 423 (657)
.+. ..+++||.+++||+++++++.+++.+.++ .++++.||+||+++.++.
T Consensus 283 ----------------~~~--------~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~ 338 (590)
T 3kxw_A 283 ----------------KEG--------LDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTG 338 (590)
T ss_dssp ----------------GTT--------CCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEE
T ss_pred ----------------ccC--------CCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeec
Confidence 000 11258999999999999999999998873 479999999999987775
Q ss_pred ccCC--------------------------CccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccC
Q 006197 424 CFPD--------------------------EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 477 (657)
Q Consensus 424 ~~~~--------------------------~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~ 477 (657)
.... ......++|.|+++ ++|+| +++ ..+++.|+.|||+|+||+++.|||
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d-~~~-~~~~~~g~~GEl~v~g~~v~~GY~ 414 (590)
T 3kxw_A 339 GTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID-PDT-LIPCDFDQVGEIWVQSNSVAKGYW 414 (590)
T ss_dssp CCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC-TTT-CCBCCTTBCEEEEEESTTSCCCBT
T ss_pred ccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc-CCC-CcCCCCCCEEEEEEeCCccccccc
Confidence 4321 11234688999988 88888 543 356667889999999999999999
Q ss_pred CCchhhhccccC-------C--ccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHH-hcCcccc--eEEEE
Q 006197 478 KNPDLTRESIID-------G--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY-CVAPIIE--DIWVY 545 (657)
Q Consensus 478 ~~~~~~~~~~~~-------g--~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l-~~~~~V~--~~~vv 545 (657)
++++.|.+.|.+ | ||+|||+|++| +|.|+++||.||+||+ +|++|+|.+||++| ..+|.|. +|+|+
T Consensus 415 ~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~v~~~~~~v~ 492 (590)
T 3kxw_A 415 NQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-YGKNHYPQDIEFSLMHSPLHHVLGKCAAF 492 (590)
T ss_dssp TCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-HHHTTHHHHHHHHHHHSGGGGGEEEEEEE
T ss_pred CChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-CCEecCHHHHHHHHHhcCccccCccEEEE
Confidence 999999999843 5 99999999999 9999999999999998 89999999999999 8899998 78888
Q ss_pred ecCC--CCeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeee-EEEEecCCCCCC
Q 006197 546 GDSL--KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIK-GVILDPRPFDME 622 (657)
Q Consensus 546 ~~~~--~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~-~i~~~~~~f~~~ 622 (657)
+.++ .+.+++++++.++. ......+.+.+.+++.+.. .+++|. .+.++. ++
T Consensus 493 ~~~~~~~~~~~~~v~~~~~~------------------~~~~~~~~l~~~l~~~l~~----~~~~p~~~i~~v~----~~ 546 (590)
T 3kxw_A 493 VIQEEHEYKLTVMCEVKNRF------------------MDDVAQDNLFNEIFELVYE----NHQLEVHTIVLIP----LK 546 (590)
T ss_dssp EEEETTEEEEEEEEEESCTT------------------CCHHHHHHHHHHHHHHHHH----HHSCCCCEEEEEE----TT
T ss_pred EecCCCCceEEEEEEecccc------------------ccchhHHHHHHHHHHHHHH----HcCCceeEEEEEC----CC
Confidence 8543 35778888877542 0111122333333333321 244453 455553 24
Q ss_pred CCccccccccchHHHHHHHHH
Q 006197 623 RDLVTATLKKKRNKLLIYYQV 643 (657)
Q Consensus 623 ~~P~t~~GKv~r~~l~~~~~~ 643 (657)
.+|+|++|||+|++|+++|.+
T Consensus 547 ~lP~t~sGKi~R~~L~~~~~~ 567 (590)
T 3kxw_A 547 AMPHTTSGKIRRNFCRKHLLD 567 (590)
T ss_dssp CSCCCSCHHHHHHHHHHHHHH
T ss_pred ccCcCCCcHHHHHHHHHHHHc
Confidence 569999999999999999875
No 30
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=8.2e-66 Score=621.17 Aligned_cols=477 Identities=19% Similarity=0.224 Sum_probs=395.5
Q ss_pred cCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006197 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (657)
Q Consensus 41 ~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA 120 (657)
..+++++|+++++++||++|+++. + +++||+||.++++++|++|++.|+++|++|+|+++|++++++++||
T Consensus 463 ~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la 533 (1304)
T 2vsq_A 463 TKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG 533 (1304)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence 478999999999999999999875 3 5899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCCcHHHHHHHhhCCcceeeH
Q 006197 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (657)
Q Consensus 121 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 200 (657)
|+++|++++|++|.++.+++.++++.++++++|++......+.. .+....++.+++...
T Consensus 534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-----~~~~~~~~~~~~~~~---------------- 592 (1304)
T 2vsq_A 534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE-----LPYTGTTLFIDDQTR---------------- 592 (1304)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT-----CCCCSEEEESSCGGG----------------
T ss_pred HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc-----cCCCCcEEEeccccc----------------
Confidence 99999999999999999999999999999999999876543211 111122333332110
Q ss_pred HHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 006197 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (657)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g 280 (657)
. .. ....+.....++++++|+|||||||.||||+++|+++.+. ......+ ++.++|++++..|++|..+
T Consensus 593 --~-~~--~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~-----~~~~~d~~l~~~~~~fd~~ 661 (1304)
T 2vsq_A 593 --F-EE--QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM-----AFSDQDTFLSVSNYAFDAF 661 (1304)
T ss_dssp --G-GS--CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS-----CCCTTCEEEECSCTTSTHH
T ss_pred --c-cc--ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc-----CCCCCCEEEEECCccHHHH
Confidence 0 00 1111223457899999999999999999999999999876 3333333 7889999999999999888
Q ss_pred HHHHHHHHhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcC
Q 006197 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMG 356 (657)
Q Consensus 281 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (657)
....+.++..|+++++.+. ++..+.+.|.++++|+++++|+++..+.+....
T Consensus 662 ~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~------------------------ 717 (1304)
T 2vsq_A 662 TFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGED------------------------ 717 (1304)
T ss_dssp HHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSH------------------------
T ss_pred HHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchh------------------------
Confidence 8778889999999999874 789999999999999999999999988642100
Q ss_pred CCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhc-CCceeeeccCCCCCCccccccCCC---cccc
Q 006197 357 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---MCMV 432 (657)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~---~~~~ 432 (657)
.+ ++||.+++||+++++++.+.+.+.+ +..++|.||+||++++++...... ....
T Consensus 718 -------------~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~ 776 (1304)
T 2vsq_A 718 -------------WM--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISS 776 (1304)
T ss_dssp -------------HH--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSS
T ss_pred -------------cC--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCC
Confidence 01 2899999999999999999988776 468999999999998877654322 2234
Q ss_pred CccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhcccc-------CCccccCceEEEcCCCc
Q 006197 433 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNGV 505 (657)
Q Consensus 433 ~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~-------~g~~~TGDl~~~~~~G~ 505 (657)
.++|+|+++++++|+| +++. +++.|+.|||+|+|+++++||+++++.|.+.|. ++||+|||+|++++||.
T Consensus 777 ~~iG~p~~~~~~~i~d-~~~~--~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~ 853 (1304)
T 2vsq_A 777 LPIGKPISNASVYILN-EQSQ--LQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGT 853 (1304)
T ss_dssp CCCBEECTTEEEEEEC-TTSC--BCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSC
T ss_pred CCCceeeCCCEEEEEC-CCcC--CCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCe
Confidence 6899999999999999 6654 555678999999999999999999999999982 35999999999999999
Q ss_pred EEEEecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhc
Q 006197 506 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCS 582 (657)
Q Consensus 506 l~i~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (657)
|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.++. ..++|+|+..... +
T Consensus 854 l~~~GR~d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~~------------------~ 914 (1304)
T 2vsq_A 854 IEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQL------------------S 914 (1304)
T ss_dssp EEEEEEGGGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSSS------------------C
T ss_pred EEEEcCCCCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCCC------------------C
Confidence 9999999999998 7999999999999999999999999986543 4899999876532 1
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006197 583 LVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY 640 (657)
Q Consensus 583 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~~ 640 (657)
. ++|+++++ +.||.|++|..|+++++. |+|++|||||++|.+.
T Consensus 915 ~--------~~l~~~l~-~~Lp~ymvP~~~~~l~~l------P~t~~GKidR~~L~~~ 957 (1304)
T 2vsq_A 915 A--------EDVKAHLK-KQLPAYMVPQTFTFLDEL------PLTTNGKVNKRLLPKP 957 (1304)
T ss_dssp H--------HHHHHHHH-HHSCGGGSCSEEEEESCC------CCCSSCSSCCSCCCCC
T ss_pred H--------HHHHHHHH-HhChHhhhccEEEEeccc------CCCCCcccCHhhcCCc
Confidence 1 23344443 579999999999998764 9999999999988654
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=5.3e-56 Score=483.79 Aligned_cols=402 Identities=17% Similarity=0.203 Sum_probs=312.3
Q ss_pred CCcCcHHHHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006197 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (657)
Q Consensus 39 ~~~~~i~~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~ 118 (657)
.+..++.++|+++++++||++|+++....++..+.++++||+||.++++++|++|++.|+ +||+|+++++|++++++++
T Consensus 21 ~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~ 99 (480)
T 3t5a_A 21 MSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAF 99 (480)
T ss_dssp ---CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHH
T ss_pred CCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHH
Confidence 346799999999999999999999871101234455899999999999999999999996 9999999999999999999
Q ss_pred HHHHhcCCEEEeccC---CCChhHHHHHHhccCceEEEEcchhhhhhhcccccccc-CceEEEEecCCcHHHHHHHhhCC
Q 006197 119 EACNALSLICVPLYD---TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ-RLRVMVCFTSLTAEQKEMAVQTG 194 (657)
Q Consensus 119 lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~ 194 (657)
|||+++|++++|+++ .++.+++.++|+.++++++|++......+......... ....++..+...
T Consensus 100 lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 168 (480)
T 3t5a_A 100 LGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD----------- 168 (480)
T ss_dssp HHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC-----------
T ss_pred HHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc-----------
Confidence 999999999999999 78899999999999999999999877665443321100 111222222111
Q ss_pred cceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCC------CcE
Q 006197 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV------DDV 268 (657)
Q Consensus 195 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~------~d~ 268 (657)
.............++++++|+|||||||.||+|++||+++.+++......+ .+.. +|+
T Consensus 169 -----------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~~d~ 232 (480)
T 3t5a_A 169 -----------LDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-----FADTDGIPPPNSA 232 (480)
T ss_dssp -----------TTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-----CTTTTTCCCTTEE
T ss_pred -----------cccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-----ccccccCCCCCCe
Confidence 000112223345678999999999999999999999999999888876666 4555 999
Q ss_pred EEEecChhHHHHHHH-HHHHHhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHH
Q 006197 269 YLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342 (657)
Q Consensus 269 ~l~~~pl~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~ 342 (657)
+++.+|++|.+++.. .+.++..|+++++.+. ++..+++.++++++| +..+|+++..++.....
T Consensus 233 ~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~---------- 301 (480)
T 3t5a_A 233 LVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTT---------- 301 (480)
T ss_dssp EEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCC----------
T ss_pred EEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcC----------
Confidence 999999999999765 6778999999999863 889999999999999 88899888777542110
Q ss_pred HHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcC------CceeeeccCCC
Q 006197 343 RIFDALKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGLTE 416 (657)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~------~~v~~~yG~tE 416 (657)
.+..+ ...+++||.+++||+++++++.+++.+.++ ..+++.||+||
T Consensus 302 --------------------~~~~~--------~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE 353 (480)
T 3t5a_A 302 --------------------DDDMA--------GRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAE 353 (480)
T ss_dssp --------------------TGGGT--------TCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETT
T ss_pred --------------------ccccc--------ccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccc
Confidence 00001 112259999999999999999999998873 36999999999
Q ss_pred CCCccccccCCC------------------------ccccCccCcCccCeeEEEeecCCCCCCCCCCCCCceEEEccCCc
Q 006197 417 TCGPTTVCFPDE------------------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL 472 (657)
Q Consensus 417 ~~~~~~~~~~~~------------------------~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~~~~~GEl~v~g~~~ 472 (657)
+++.++...... ....+++|+|++ ++++|+| ++++ .+++.|+.|||+|+||++
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd-~~~g-~~~~~g~~GEl~v~g~~v 430 (480)
T 3t5a_A 354 ATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVD-SDTC-IECPDGTVGEIWVHGDNV 430 (480)
T ss_dssp TTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEE-TTTT-EECCTTBCEEEEEESTTS
T ss_pred cceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEc-CCCC-cCCCCCCEEEEEEeCCcc
Confidence 998777655432 123468999999 9999999 5532 455677899999999999
Q ss_pred ccccCCCchhhhccc------------cCCccccCceEEEcCCCcEEEEec
Q 006197 473 FSGYYKNPDLTRESI------------IDGWFHTGDIGQILPNGVVKIIDR 511 (657)
Q Consensus 473 ~~gy~~~~~~~~~~~------------~~g~~~TGDl~~~~~~G~l~i~GR 511 (657)
+.|||++++.|.+.| .+|||+|||+|++| ||+|+|+||
T Consensus 431 ~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 431 ANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp CCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred ccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 999999999999988 36799999999997 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=2.3e-49 Score=412.21 Aligned_cols=314 Identities=18% Similarity=0.122 Sum_probs=257.1
Q ss_pred CCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHHhcCcEEEEec
Q 006197 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298 (657)
Q Consensus 219 ~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~ 298 (657)
.+++++|+|||||||.||+|++||+++.+++..+...+ ++.++|++++.+|++|.+++...+.++..|+++++..
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~ 110 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE 110 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence 46899999999999999999999999999998887777 8999999999999999999988888999999998876
Q ss_pred CChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHc
Q 006197 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRKVKARL 378 (657)
Q Consensus 299 ~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (657)
.. ...++.++++++|++.++|+++..|++.... .. .
T Consensus 111 ~~-~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~-----------------------------------~~--------~ 146 (358)
T 4gs5_A 111 PT-ANPLAGLDHADFDFVAMVPMQLQSILENSAT-----------------------------------SG--------Q 146 (358)
T ss_dssp CC-SCTTTTCSSCCCSEEEECHHHHHHHHHCTTT-----------------------------------GG--------G
T ss_pred cc-ccHHHHHHHhCCeEEEcChHHHHHhhccccc-----------------------------------cc--------c
Confidence 42 2346778999999999999999988642110 00 1
Q ss_pred CCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccCccCcCccCeeEEEeecCCCCCCCCC
Q 006197 379 GGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLD 458 (657)
Q Consensus 379 ~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~~~~~~~ 458 (657)
+++||.+++||+++++++.+++.+ +++++++.||+||++..++....+.... +++|.+.|++++.+.+
T Consensus 147 l~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~-g~~~~~~pgv~~~~~~---------- 214 (358)
T 4gs5_A 147 VDRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEA-SELYVFLPGIQYGVDE---------- 214 (358)
T ss_dssp GGGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTC-CSCEEECTTCEEEECT----------
T ss_pred CCcceEEEEcccCCCchheecccc-cCceEEeccccccccceeeccccccccc-ceeeccCCCeEEEecC----------
Confidence 148999999999999999999987 5999999999999998877766555443 8899999999888765
Q ss_pred CCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCCcEEEEecCcceeecCCceeeccHHHHHHH---hc
Q 006197 459 DPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY---CV 535 (657)
Q Consensus 459 ~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~l---~~ 535 (657)
.|||+++|+.. .+|||+|||+|++|++| ++++||.||+||+ +|++|+|.+||+.| .+
T Consensus 215 ---~Gel~~~g~~~---------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~ 274 (358)
T 4gs5_A 215 ---RGCLHISGAVT---------------NGQTVQTNDLVEIHGNA-FQWIGRADNVINS-GGVKIVLDQIDQRIAAVFH 274 (358)
T ss_dssp ---TSEEEEESGGG---------------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTEEEEHHHHHHHHHHHHH
T ss_pred ---cCceEEecccc---------------cCcceecCCccccccCc-eEEcccccCeEEE-CCEEECHHHHHHHHHHhcc
Confidence 59999998632 27899999999999988 6677999999997 89999999999877 46
Q ss_pred CcccceEEEEe-cCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeE
Q 006197 536 APIIEDIWVYG-DSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKG 611 (657)
Q Consensus 536 ~~~V~~~~vv~-~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~ 611 (657)
||+|.+|+|+. .+++ +.++|+|+..... .. .++|+++++ ++||.|++|++
T Consensus 275 ~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~---------------------~~----~~~l~~~l~-~~L~~~~~P~~ 328 (358)
T 4gs5_A 275 HLNIGNAFFCWWEPDAKLGQKLVLVIENAMPE---------------------AL----TERLTAEIR-SRVSTYENPKH 328 (358)
T ss_dssp HHTCCCCEEEEEEEETTTEEEEEEEEESCCCH---------------------HH----HHHHHHHHH-HHSCGGGSCSC
T ss_pred CCCccEEEEEEecCCccCCEEEEEEEECCCCC---------------------cC----HHHHHHHHH-hhCCCCCCceE
Confidence 89999998874 4333 4788888766532 11 223444454 57999999999
Q ss_pred EEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006197 612 VILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI 645 (657)
Q Consensus 612 i~~~~~~f~~~~~P~t~~GKv~r~~l~~~~~~~i 645 (657)
|+++++. |+|++|||+|++|++++++..
T Consensus 329 i~~v~~l------P~t~~GKi~R~~L~~~l~e~~ 356 (358)
T 4gs5_A 329 IYFAKAF------AKTQTDKIDKRATFQKLSDSS 356 (358)
T ss_dssp EEEESSC------CBCTTSCBCHHHHHHHTC---
T ss_pred EEEECCc------CCCCCCChhHHHHHHHhhhhc
Confidence 9998764 999999999999999887654
No 33
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=1e-43 Score=382.31 Aligned_cols=338 Identities=17% Similarity=0.148 Sum_probs=256.6
Q ss_pred CCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecCh-hHHHHHHHHHHHHhcCcEE
Q 006197 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASV 294 (657)
Q Consensus 216 ~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl-~~~~g~~~~~~~l~~G~~~ 294 (657)
...++++++++|||||||.||+|++||+++......+...+.. .++.++|++++.+|+ +|..++...+.++..|+++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~ 165 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRA--AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMV 165 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEE
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEE
Confidence 3467899999999999999999999999998776554432211 268899999999998 5777777777889999998
Q ss_pred EEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHH
Q 006197 295 GYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRK 373 (657)
Q Consensus 295 v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (657)
++.+. ++..+++.|+++++|+++++|+++..|.+.........
T Consensus 166 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~------------------------------------ 209 (443)
T 2y4o_A 166 VPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDP------------------------------------ 209 (443)
T ss_dssp ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG------------------------------------
T ss_pred EECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCc------------------------------------
Confidence 88765 89999999999999999999999999876543211000
Q ss_pred HHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCc-cccccCCCccccCccCcCccCeeEEEeecCCC
Q 006197 374 VKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEM 452 (657)
Q Consensus 374 ~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~-~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~ 452 (657)
..+++|.+++||+++++++.+.+.+.+|+++++.||+||+++. +........ ...+.+.+++.++|+| +++
T Consensus 210 ----~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d-~~~ 281 (443)
T 2y4o_A 210 ----AESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVETK---DGPVIWEDHFYPEIID-PVT 281 (443)
T ss_dssp ----GGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTTC---CSEEECTTTEEEEEEC-TTT
T ss_pred ----ccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCCC---CceEEccCCeEEEEEc-CCC
Confidence 0148999999999999999999998889999999999998543 232211111 1244567899999998 442
Q ss_pred CCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCC-CcE-----EEEecCcceeecCCceeecc
Q 006197 453 GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN-GVV-----KIIDRKKNLIKISQGEYVAL 526 (657)
Q Consensus 453 ~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~-G~l-----~i~GR~~d~i~~~~G~~v~~ 526 (657)
+ .+++.|+.|||+|+|. +.+.|.++||+|||+|+++++ |++ ++.||.+|+|++ +|.+|+|
T Consensus 282 g-~~~~~G~~Gel~v~~~------------t~~~~p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~-~G~~v~p 347 (443)
T 2y4o_A 282 G-EVLPDGSQGELVFTSL------------TKEAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIV-RGVNVFP 347 (443)
T ss_dssp C-CBCCTTCCEEEEEEES------------SCSSSCCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEE-TTEEECH
T ss_pred C-CCCCCCCceEEEEeCC------------CcccChhheeecCCEEEEcCCCCCCccccCccccccCCeEEE-CCEEECH
Confidence 2 4566778999999983 334456899999999999999 986 899999999997 7999999
Q ss_pred HHHHHHHhcCcccceEEEEecCC---CCeEEEEEecCh--hhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhC
Q 006197 527 EYLENVYCVAPIIEDIWVYGDSL---KSMLVAVVVPCE--EDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERN 601 (657)
Q Consensus 527 ~~iE~~l~~~~~V~~~~vv~~~~---~~~~~a~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 601 (657)
.+||++|.+||+|.+++|++..+ .+.++++|++.+ +.. ......+.+.+.+++
T Consensus 348 ~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~-----------------~~~~~~~~l~~~l~~----- 405 (443)
T 2y4o_A 348 SQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAAS-----------------VTDGERAALARELQH----- 405 (443)
T ss_dssp HHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTT-----------------CCHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCccccc-----------------chhhHHHHHHHHHHH-----
Confidence 99999999999999999887432 357889999876 210 001111223333332
Q ss_pred CCCCc-eeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006197 602 KLRGF-EHIKGVILDPRPFDMERDLVTATLKKKRNKLLI 639 (657)
Q Consensus 602 ~l~~~-~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~l~~ 639 (657)
.|+.| .+|..|.+++ ++++|+|++||++|+..++
T Consensus 406 ~l~~~~~~p~~v~~v~----~~~lP~t~~GKi~r~~~~r 440 (443)
T 2y4o_A 406 RIKTMVGVSSGVTVLA----AGGIPATATGKARRVIDRR 440 (443)
T ss_dssp HHHHHTCCCCEEEEEC----TTCSCCCTTSCCCSEEECC
T ss_pred HHHHHhCCceEEEEeC----CCcccCccCCcceEEEecc
Confidence 34444 4777788774 2456999999999976443
No 34
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=4e-43 Score=376.83 Aligned_cols=334 Identities=17% Similarity=0.165 Sum_probs=248.0
Q ss_pred CCCC-CceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHH-HHHHHHhcCcE
Q 006197 216 PPQP-FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV-IEEYFFRRGAS 293 (657)
Q Consensus 216 ~~~~-~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~-~~~~~l~~G~~ 293 (657)
...+ +++++++|||||||.||+|++||+++.+.+..+...+.. .++.++|++++.+|+.|..+.. ..+.++..|++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~ 158 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYM--VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL 158 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHH--TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHH--cCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence 3455 899999999999999999999999998877665432211 2688999999999987555544 56677999999
Q ss_pred EEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHH
Q 006197 294 VGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFR 372 (657)
Q Consensus 294 ~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (657)
+++.+. ++..+++.|+++++|+++++|+++..|.+.........
T Consensus 159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~----------------------------------- 203 (436)
T 3qov_A 159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDP----------------------------------- 203 (436)
T ss_dssp EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCT-----------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------------
Confidence 988765 89999999999999999999999999886544221100
Q ss_pred HHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCccccccCCCccccCccCcCccCeeEEEeecCCC
Q 006197 373 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEM 452 (657)
Q Consensus 373 ~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~ 452 (657)
.+++||.+++||+++++++.+.+.+.+|+++++.||+||+++.++...... . ...|.+.++++++|+| +++
T Consensus 204 -----~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~--~-~g~~~~~~~~~v~i~d-~~~ 274 (436)
T 3qov_A 204 -----RETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQE--Q-NGMHFWEDCYLVEIID-PET 274 (436)
T ss_dssp -----TSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECTT--C-SSEEECTTTEEEEEEC-TTT
T ss_pred -----ccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecCC--C-CeeEEccCceEEEEEE-CCC
Confidence 014899999999999999999999999999999999999965433222211 1 2356677899999998 433
Q ss_pred CCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCCC------c---EEEEecCcceeecCCcee
Q 006197 453 GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG------V---VKIIDRKKNLIKISQGEY 523 (657)
Q Consensus 453 ~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G------~---l~i~GR~~d~i~~~~G~~ 523 (657)
+ .+++.|+.|||+|+|. +...|.++||+|||+|+++++| + +++.||.||+|++ +|++
T Consensus 275 g-~~~~~g~~Gel~v~~~------------~~~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~-~G~~ 340 (436)
T 3qov_A 275 G-EPVPEGEIGELVLTTL------------DREMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFII-KGVN 340 (436)
T ss_dssp C-SBCSTTCCEEEEEEES------------SCCSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEE-TTEE
T ss_pred C-CCCCCCCceEEEEecc------------CcCCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEE-CCEE
Confidence 3 4566778999999983 3344568999999999999998 5 6999999999998 7999
Q ss_pred eccHHHHHHHhcCcccceEEEEecCC---CCeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHh
Q 006197 524 VALEYLENVYCVAPIIEDIWVYGDSL---KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAER 600 (657)
Q Consensus 524 v~~~~iE~~l~~~~~V~~~~vv~~~~---~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 600 (657)
|+|.+||++|.+||+|.+++|++..+ .+.++++|++. +.. . .+.. ...++.+.+++.|
T Consensus 341 v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~--------~-~~~~---~~~~l~~~l~~~l------ 401 (436)
T 3qov_A 341 IFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DLS--------T-DNYI---ELEKIRRDIIRQL------ 401 (436)
T ss_dssp ECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTC--------C-CCHH---HHHHHHHHHHHHH------
T ss_pred ECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-Ccc--------c-cchh---hHHHHHHHHHHHH------
Confidence 99999999999999999999998654 35899999988 430 0 0000 0122333333333
Q ss_pred CCCCCc-eeeeEEEEecCCCCCCCCccccccccchHH
Q 006197 601 NKLRGF-EHIKGVILDPRPFDMERDLVTATLKKKRNK 636 (657)
Q Consensus 601 ~~l~~~-~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~ 636 (657)
+.+ ++|..+.+++ .+.+|+|+ ||++|..
T Consensus 402 ---~~~~~~p~~i~~v~----~~~lP~t~-GKi~R~~ 430 (436)
T 3qov_A 402 ---KDEILVTPKVKLVK----KGSLPQSE-GKAVRVK 430 (436)
T ss_dssp ---HHHHSSCCEEEEEC----TTCCC--------CEE
T ss_pred ---HHhcCCceEEEEeC----CCcccCcC-CcceEEE
Confidence 234 5677788876 23569999 9999853
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=1.8e-42 Score=371.82 Aligned_cols=334 Identities=18% Similarity=0.160 Sum_probs=255.5
Q ss_pred CCCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecCh-hHHHHHHHHHHHHhcCcEE
Q 006197 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASV 294 (657)
Q Consensus 216 ~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl-~~~~g~~~~~~~l~~G~~~ 294 (657)
...++++++++|||||||.||+|++||+++...+..+...+.. .++.++|++++.+|+ +|..++...+.++..|+++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 163 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRA--AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTV 163 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEE
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEcccccccccchHHHHHHHHcCCEE
Confidence 3467899999999999999999999999998776554432211 268899999999998 6777777778889999999
Q ss_pred EEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHH
Q 006197 295 GYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAWMNMGYKQREASPLADLLAFRK 373 (657)
Q Consensus 295 v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (657)
++.+. ++..+++.|+++++|+++++|+++..|.+.........
T Consensus 164 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~------------------------------------ 207 (437)
T 2y27_A 164 IPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDP------------------------------------ 207 (437)
T ss_dssp ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG------------------------------------
T ss_pred EeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc------------------------------------
Confidence 87765 89999999999999999999999999876543211000
Q ss_pred HHHHcCCcEEEEEEcCCCCCHHHHHHHHHhcCCceeeeccCCCCCCc-cccccCCCccccCccCcCccCeeEEEeecCCC
Q 006197 374 VKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEM 452 (657)
Q Consensus 374 ~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~-~~~~~~~~~~~~~~~G~~~~~~~~~iv~~~~~ 452 (657)
..+++|.+++||+++++++.+.+.+.+|+++++.||+||+++. ++....... ...+.+.+++.++|+| +++
T Consensus 208 ----~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d-~~~ 279 (437)
T 2y27_A 208 ----VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVETK---DGPTIWEDHFYPEIID-PET 279 (437)
T ss_dssp ----GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTTC---SSCEECTTTEEEEEEC-TTT
T ss_pred ----ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCCC---CceeEccCceEEEEEc-CCC
Confidence 0148999999999999999999998889999999999998543 332221111 1255667899999998 443
Q ss_pred CCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcC-CCcE-----EEEecCcceeecCCceeecc
Q 006197 453 GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP-NGVV-----KIIDRKKNLIKISQGEYVAL 526 (657)
Q Consensus 453 ~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~-~G~l-----~i~GR~~d~i~~~~G~~v~~ 526 (657)
..+++.|+.|||+++|. +.+.|.++||+|||+|++++ +|++ ++.||.||+|++ +|++|+|
T Consensus 280 -g~~~~~g~~Gel~v~~~------------t~~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~-~G~~v~p 345 (437)
T 2y27_A 280 -GEVLPDGELGELVFTSL------------TKEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIV-RGVNVFP 345 (437)
T ss_dssp -CCBCCTTCCEEEEEEES------------SCSSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEE-TTEEECH
T ss_pred -CCCCCCCCccEEEEecC------------CcCCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEE-CCeEECH
Confidence 24566788999999982 33445689999999999998 6985 899999999997 8999999
Q ss_pred HHHHHHHhcCcccceEEEEecC---CCCeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHHHHHHHHHHHHHHHhCCC
Q 006197 527 EYLENVYCVAPIIEDIWVYGDS---LKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKL 603 (657)
Q Consensus 527 ~~iE~~l~~~~~V~~~~vv~~~---~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l 603 (657)
.+||++|.+||+|.+++|++.. ..+.++++|++.++.. ......+.+.+.++ +.|
T Consensus 346 ~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~-----------------~~~~~~~~l~~~l~-----~~l 403 (437)
T 2y27_A 346 TQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETA-----------------PDTAAIQVAKQALA-----YDI 403 (437)
T ss_dssp HHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTT-----------------TCHHHHHHHHHHHH-----HHH
T ss_pred HHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCcc-----------------chhhhHHHHHHHHH-----HHH
Confidence 9999999999999999888743 2458999999886430 00011122233332 344
Q ss_pred CCc-eeeeEEEEecCCCCCCCCccccccccchHH
Q 006197 604 RGF-EHIKGVILDPRPFDMERDLVTATLKKKRNK 636 (657)
Q Consensus 604 ~~~-~~p~~i~~~~~~f~~~~~P~t~~GKv~r~~ 636 (657)
+.| .+|..|.+++ ++++|+|+ ||++|+.
T Consensus 404 ~~~~~~p~~v~~v~----~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 404 KSLIGVTAVINVLP----VNGIERSV-GKARRVV 432 (437)
T ss_dssp HHHHCCCEEEEECC----TTCSCCCS-SSCCCEE
T ss_pred HHhcCCceEEEEeC----CCCccCCC-CcceEEE
Confidence 455 4788888764 24569999 9999864
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.95 E-value=2.2e-27 Score=248.49 Aligned_cols=236 Identities=17% Similarity=0.161 Sum_probs=171.6
Q ss_pred CCCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecCh-hHHHHHHHHHHHHhcCcEEE
Q 006197 217 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASVG 295 (657)
Q Consensus 217 ~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl-~~~~g~~~~~~~l~~G~~~v 295 (657)
..++++++++|||||||.||+|+++|+++......+...+.. .++.++|++++.+|+ +|..++...+.++..|+.++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQH--RPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTT--STTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHh--hCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEE
Confidence 467889999999999999999999999999988754433221 267899999999999 99999888777889999433
Q ss_pred EecCChH-----------------------HHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 006197 296 YYHGDLN-----------------------ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALKLAW 352 (657)
Q Consensus 296 ~~~~~~~-----------------------~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (657)
....++. .+++.++++++|++.++|+++..|++....
T Consensus 166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~-------------------- 225 (369)
T 3hgu_A 166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEV-------------------- 225 (369)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHH--------------------
T ss_pred CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhh--------------------
Confidence 3333665 777799999999999999999998754211
Q ss_pred hhcCCCCCCcchhHHHHHHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHH-Hhc-CCceeeeccCCCCCCccccccCCCcc
Q 006197 353 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR-VTC-CAFLVQGYGLTETCGPTTVCFPDEMC 430 (657)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~-~~~-~~~v~~~yG~tE~~~~~~~~~~~~~~ 430 (657)
...++ ++||.+++||+++++++.+.+. +.+ ++++++.||+||+++++..++.
T Consensus 226 --------------~~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~---- 279 (369)
T 3hgu_A 226 --------------VLQMK--------QSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI---- 279 (369)
T ss_dssp --------------HHHHH--------HHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB----
T ss_pred --------------hcccc--------CCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc----
Confidence 01112 2899999999999999999999 888 8999999999999876543321
Q ss_pred ccCccCcC------ccCeeEEEeecC-CCCCCCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCC
Q 006197 431 MVGTAGPV------SVYSELRLEEVP-EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN 503 (657)
Q Consensus 431 ~~~~~G~~------~~~~~~~iv~~~-~~~~~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~ 503 (657)
.++|.+ +++++++|+| + ++ .+++.|+.|||+|++..-. .+ --.|+|||++...+.
T Consensus 280 --~~~G~~~~~~~~~~~~~v~ivD-~~~g--~~vp~G~~GEl~vt~l~~~------------~~-l~ry~tgD~~~~~~~ 341 (369)
T 3hgu_A 280 --TSESQQVIYDSFSPFITYDVVD-SITA--QTVEYGERGNVIVTHLSPW------------AF-YPRVAERDTAIRLPG 341 (369)
T ss_dssp --CTTCSSCEEECCTTTEEEEEEC-TTTC--SBCCTTCEEEEEEEEEETT------------EE-EEEEEEEEEEEEECC
T ss_pred --ccCCCcccccCCCCCeEEEEEC-CCCC--cCCCCCCceEEEEEEcCcc------------cc-cccccCCceEEEecC
Confidence 248888 9999999998 5 44 4666789999999973211 11 113788888876432
Q ss_pred --C-------cEEEEecCcceeec
Q 006197 504 --G-------VVKIIDRKKNLIKI 518 (657)
Q Consensus 504 --G-------~l~i~GR~~d~i~~ 518 (657)
| .+..++|.++..++
T Consensus 342 ~~g~~~d~~~~v~~~~~~~~~~~i 365 (369)
T 3hgu_A 342 VSGFAGDRLADIEPLKISEGRKVI 365 (369)
T ss_dssp STTCSSCEEEEEEECC--------
T ss_pred CCCCcCcccccceeccccCCCcee
Confidence 2 24556676666665
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.22 E-value=2.3e-11 Score=102.21 Aligned_cols=98 Identities=11% Similarity=-0.006 Sum_probs=64.4
Q ss_pred ecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHH
Q 006197 510 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL 586 (657)
Q Consensus 510 GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (657)
.|.||+|++ +|.+|+|.+||++|.+||+|.+++|++.++. +.+.++|+..++.. .....
T Consensus 1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~-----------------~~~~~ 62 (109)
T 3lax_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFT-----------------DDYGR 62 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCC-----------------CCHHH
T ss_pred CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccc-----------------cccch
Confidence 489999998 7999999999999999999999999886543 47788888776430 12222
Q ss_pred HHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccch
Q 006197 587 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKR 634 (657)
Q Consensus 587 ~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r 634 (657)
.+.+.+.|++.+... +.++..+.+++ .+++|+| +||++|
T Consensus 63 ~~~l~~~i~~~l~~~----~gv~~~v~~v~----~~~lPrt-sGKi~R 101 (109)
T 3lax_A 63 LQALTREITRQLKDE----ILVTPRVKLVP----KGALPKS-EGKAVR 101 (109)
T ss_dssp HHHHHHHHHHHHHHH----HSSCCEEEEEC----TTCSCCC----CCC
T ss_pred hhhhHHHHHHHHHHH----hCCccceEEEc----CCeecCC-CCCcch
Confidence 333344444444311 11233466664 3567998 799988
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.05 E-value=3.4e-10 Score=94.83 Aligned_cols=99 Identities=14% Similarity=0.082 Sum_probs=63.1
Q ss_pred ecCcceeecCCceeeccHHHHHHHhcCcccceEEEEecCC---CCeEEEEEecChhhHHHHHHHCCCCccHHHHhccHHH
Q 006197 510 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL---KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL 586 (657)
Q Consensus 510 GR~~d~i~~~~G~~v~~~~iE~~l~~~~~V~~~~vv~~~~---~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (657)
||.+|+|++ +|.+|+|.+||++|.+||+|.++++++.++ .+.+++++++ ++.. ..+.. ...++
T Consensus 1 GR~~D~Iiv-~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~---------~~~~~---~~~~l 66 (109)
T 3gxs_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLF---------TDDYG---RLQAL 66 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTC---------CCCHH---HHHHH
T ss_pred CCccCEEEE-CCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCcc---------ccchh---HHHHH
Confidence 899999998 799999999999999999999888776432 2578888887 4320 00000 11234
Q ss_pred HHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchH
Q 006197 587 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRN 635 (657)
Q Consensus 587 ~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~f~~~~~P~t~~GKv~r~ 635 (657)
.+.+.+.+.+.. .+ +..+.+++. +++|+| +||++|.
T Consensus 67 ~~~i~~~l~~~~---~~-----~~~v~~v~~----~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 67 TREITRQLKDEI---LV-----TPRVKLVPK----GALPKS-EGKAVRV 102 (109)
T ss_dssp HHHHHHHHHHHH---SS-----CCEEEEECT----TCSCCC----CCCE
T ss_pred HHHHHHHHHHhh---CC-----ceEEEEECC----CCccCC-CCceEEE
Confidence 444444443322 23 225777651 456999 9999874
No 39
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.72 E-value=5.7e-08 Score=104.35 Aligned_cols=160 Identities=19% Similarity=0.138 Sum_probs=89.8
Q ss_pred cCCc---EEEEEEcCCCCCHHHHHHHHHhc-CCcee-eeccCCCCCCccccccCCCccccCccCc-CccC-eeEEEeecC
Q 006197 378 LGGR---LRLVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGP-VSVY-SELRLEEVP 450 (657)
Q Consensus 378 ~~~~---lr~i~~~G~~l~~~~~~~~~~~~-~~~v~-~~yG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~iv~~~ 450 (657)
+-|+ +..+++||. ..-...++..+ +.+++ ..|++||+-. .....+... +...+. .+++ .-...++.+
T Consensus 295 lWPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~-gi~~~p~~~--~~~~~~~L~~~~~ffEFip~~ 368 (581)
T 4eql_A 295 LWPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETTF-GINLDPLCK--PEDVSYTFMPNMSYFEFIPMD 368 (581)
T ss_dssp HSTTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCEE-EECSCTTSC--GGGCCEEECTTSSEEEEEECS
T ss_pred hCCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCcccccccee-eeccCCCCC--cccCceeecCCcEEEEEEecc
Confidence 3367 555566663 33334444433 67777 9999999532 221111111 011221 1222 233444422
Q ss_pred CC-CC-----CCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcC----CCcEEEEecCcceeecCC
Q 006197 451 EM-GY-----SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIKISQ 520 (657)
Q Consensus 451 ~~-~~-----~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~----~G~l~i~GR~~d~i~~~~ 520 (657)
+. .+ ..+..|+.+||+++.. .|.|+ |++||+.+++. ..++.|.||.+++|.+ .
T Consensus 369 ~~~~~~~v~l~eVe~G~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~-~ 431 (581)
T 4eql_A 369 GGDKNDVVDLEDVKLGCTYEPVVTNF---AGLYR-------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSI-D 431 (581)
T ss_dssp TTCCSSCEEGGGCCTTCEEEEEEECS---SSCCS-------------EECCEEEEEEEEETTEEEEEEEEETTEEECS-S
T ss_pred ccCCCcEeCHHHcCCCceEEEEEeec---cceee-------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEe-e
Confidence 21 11 1233567899999874 34444 99999999875 4579999999999997 7
Q ss_pred ceeeccHHHHHHHhcCc--------ccceEEEEecC--CCCeEEEEEecC
Q 006197 521 GEYVALEYLENVYCVAP--------IIEDIWVYGDS--LKSMLVAVVVPC 560 (657)
Q Consensus 521 G~~v~~~~iE~~l~~~~--------~V~~~~vv~~~--~~~~~~a~v~~~ 560 (657)
|++++..+||++|.+.- .|.|..++... .+.+-+.+.++.
T Consensus 432 Gekl~~~~v~~al~~a~~~l~~~g~~l~eft~~~~~~~~p~Hy~~~wel~ 481 (581)
T 4eql_A 432 SDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYADTSTFPGHYVVYLEVD 481 (581)
T ss_dssp SCCEEHHHHHHHHHHC--------------CEEEECSSSSBEEEEECC--
T ss_pred eeECCHHHHHHHHHHHHHhhhhcCCEEEEEEEecCCCCCCCeEEEEEEEe
Confidence 99999999999997432 24455544322 123555555553
No 40
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.58 E-value=2.2e-07 Score=99.86 Aligned_cols=87 Identities=16% Similarity=0.203 Sum_probs=63.1
Q ss_pred CCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcC----CCcEEEEecCcceeecCCceeeccHHHHHH
Q 006197 457 LDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIKISQGEYVALEYLENV 532 (657)
Q Consensus 457 ~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~----~G~l~i~GR~~d~i~~~~G~~v~~~~iE~~ 532 (657)
+..|+.+||+++.. .|.|+ |++||+++++. ..++.|.||.+++|.+ .|+++.+.+||++
T Consensus 393 Ve~G~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~-~Geki~~~~v~~a 455 (609)
T 4b2g_A 393 VEVGKEYELVITTY---AGLYR-------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSI-DSDKTDEAELQKA 455 (609)
T ss_dssp CCTTCEEEEEEECT---TSCCS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS-SSCCBCHHHHHHH
T ss_pred cCCCCeEEEehhhh---hhhhh-------------eecCCEEEEeecCCCCcEEEEEEecCCeEEc-cccCCCHHHHHHH
Confidence 34667899999763 46555 99999999873 4679999999999997 7999999999999
Q ss_pred HhcC------c--ccceEEEEecC--CCCeEEEEEecC
Q 006197 533 YCVA------P--IIEDIWVYGDS--LKSMLVAVVVPC 560 (657)
Q Consensus 533 l~~~------~--~V~~~~vv~~~--~~~~~~a~v~~~ 560 (657)
|... . .|.|..++... .+.+-+.+.++.
T Consensus 456 v~~a~~~l~~~g~~l~eft~~~d~~~~p~Hyv~~wEl~ 493 (609)
T 4b2g_A 456 VDNASKLLREVNTSVVEYTSFADTKTIPGHYVIYWELL 493 (609)
T ss_dssp HHHHHHGGGGTTEEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred HHHHHHhhhccCCeEEEEEEecCCCCCCCcEEEEEEEe
Confidence 9631 2 35566655322 233555555553
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.45 E-value=1.4e-06 Score=93.45 Aligned_cols=162 Identities=19% Similarity=0.127 Sum_probs=93.3
Q ss_pred HcCCcEEEE--EEcCCCCCHHHHHHHHHhc-CCcee-eeccCCCCCCccccccCCCccccCccCc-CccC-eeEEEeecC
Q 006197 377 RLGGRLRLV--ISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGP-VSVY-SELRLEEVP 450 (657)
Q Consensus 377 ~~~~~lr~i--~~~G~~l~~~~~~~~~~~~-~~~v~-~~yG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~iv~~~ 450 (657)
.+-|+++.+ +.+|. + ..-...++..+ +.+++ ..|++||+-. .....+.. .++..+. .+|+ .-...++.+
T Consensus 299 ~lWPnl~~i~~~~~G~-~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~-gi~~~p~~--~~~~~~~~L~p~~~ffEFiP~~ 373 (581)
T 4epl_A 299 ALFPNAKYVYGIMTGS-M-EPYVPKLRHYAGDLPLVSHDYGSSEGWI-AANVTPRL--SPEEATFAVIPNLGYFEFLPVS 373 (581)
T ss_dssp HHCTTCCCEEEECSGG-G-GGGHHHHHHHHTTSCEEECCEEETTEEE-EECCCTTS--CTTTCCEEECTTSCEEEEEEC-
T ss_pred HhCCCCceEEEEeCCC-h-HHHHHHHHHHcCCCccccCceeccceee-eeecCCCC--CccccceeecCCcEEEEEEecc
Confidence 344788633 34442 2 22334454444 67777 9999999632 22211111 1111221 2222 222333311
Q ss_pred CCC---C-----CCCCCCCCceEEEccCCcccccCCCchhhhccccCCccccCceEEEcCC----CcEEEEecCcceeec
Q 006197 451 EMG---Y-----SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN----GVVKIIDRKKNLIKI 518 (657)
Q Consensus 451 ~~~---~-----~~~~~~~~GEl~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~----G~l~i~GR~~d~i~~ 518 (657)
+.. + ..+..|+.+||+++.. .|.|+ |++||+.++..- .++.|.||.++++.+
T Consensus 374 ~~~~~~~~~v~l~eve~G~~YelviTt~---~GL~R-------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~ 437 (581)
T 4epl_A 374 ETGEGEEKPVGLTQVKIGEEYEVVITNY---AGLYR-------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSI 437 (581)
T ss_dssp ------CCCEEGGGCCTTCEEEEEEEST---TSCSS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS
T ss_pred cccCCCCceeeHHHcCCCCeEEEEEeec---cceee-------------EEcCCEEEEecccCCCcEEEEEeecCCeEEe
Confidence 111 1 1234577899999874 34444 999999998642 469999999999998
Q ss_pred CCceeeccHHHHHHHhc------Cc--ccceEEEEecCC--CCeEEEEEecC
Q 006197 519 SQGEYVALEYLENVYCV------AP--IIEDIWVYGDSL--KSMLVAVVVPC 560 (657)
Q Consensus 519 ~~G~~v~~~~iE~~l~~------~~--~V~~~~vv~~~~--~~~~~a~v~~~ 560 (657)
.|++++..+||++|.. .. .|.|..++.... +.+-+.+.++.
T Consensus 438 -~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~hyv~~wE~~ 488 (581)
T 4epl_A 438 -NIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGHYAIFWEIS 488 (581)
T ss_dssp -SSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSCEEEEEEEES
T ss_pred -eeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCCcEEEEEeec
Confidence 7999999999999964 12 466666665322 23555556654
No 42
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=90.96 E-value=1.8 Score=44.92 Aligned_cols=122 Identities=8% Similarity=-0.049 Sum_probs=88.8
Q ss_pred CCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHhcCCEEEecc
Q 006197 57 GNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPLY 132 (657)
Q Consensus 57 ~~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~--~e~~~~~lA~~~~G~~~v~l~ 132 (657)
+.++++... .|.+|..+ .+|.+.+...+..++..+...|+.++|+++..++-+ ...+..+++++..|+..++.+
T Consensus 86 ~~~a~i~~T--SGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 163 (436)
T 3qov_A 86 RDGVRIHSS--SGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA 163 (436)
T ss_dssp HHEEEEEEC--SCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred CCeEEEEEC--CCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence 445544331 56666544 679999999888888888888999999999988754 334556788899999988776
Q ss_pred CCCChhHHHHHHhccCceEEEEcchhhhhhhccccc-----cccCceEEEEecC
Q 006197 133 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR-----SAQRLRVMVCFTS 181 (657)
Q Consensus 133 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~ 181 (657)
+. ..+.+...++..++.+++.....+..+...... ....++.+++-..
T Consensus 164 ~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 216 (436)
T 3qov_A 164 AG-NSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAE 216 (436)
T ss_dssp SC-CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESS
T ss_pred CC-CHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCC
Confidence 54 678889999999999999999877766543221 1345666666543
No 43
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=90.20 E-value=2.1 Score=44.50 Aligned_cols=107 Identities=13% Similarity=0.066 Sum_probs=81.2
Q ss_pred CCCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHhcCCEEEe
Q 006197 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVP 130 (657)
Q Consensus 55 ~p~~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~--~e~~~~~lA~~~~G~~~v~ 130 (657)
.++.++.+... .|.+|..+ .+|...+...+..++..+...|+.++|++...++.+ ...+...++++..|+..++
T Consensus 88 ~~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 88 PQDRISRIHAS--SGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp CGGGCCEEEEC--CCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred ChhHeEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 34556644331 56666543 678999988888888888888999999999988863 3334557888899999887
Q ss_pred ccCCCChhHHHHHHhccCceEEEEcchhhhhhhc
Q 006197 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS 164 (657)
Q Consensus 131 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 164 (657)
++.. +.+.+...++..++.+++.....+..+.+
T Consensus 166 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~ 198 (437)
T 2y27_A 166 FGGG-QTEKQVQLIQDFRPDIIMVTPSYMLSIAD 198 (437)
T ss_dssp CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred CCCC-CHHHHHHHHHHhCCCEEEECHHHHHHHHH
Confidence 7654 78888999999999999999887766544
No 44
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=89.85 E-value=2.2 Score=44.39 Aligned_cols=105 Identities=13% Similarity=0.088 Sum_probs=80.9
Q ss_pred CCCCce-eeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHhcCCEEEe
Q 006197 56 PGNRML-GWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVP 130 (657)
Q Consensus 56 p~~~a~-~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~--~e~~~~~lA~~~~G~~~v~ 130 (657)
++.++. .+. .|.+|..+ .+|...+...+..++..+...|+.++|+++..++-+ ...+...++++..|+..++
T Consensus 91 ~~~~~~i~~T---SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 91 REQVVRVHAS---SGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp GGGCCEEEEE---CCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred hhheEEEEEC---CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 455554 444 56666654 678999988888888888888999999999988864 3334567888899999888
Q ss_pred ccCCCChhHHHHHHhccCceEEEEcchhhhhhhc
Q 006197 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS 164 (657)
Q Consensus 131 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 164 (657)
++.. +.+.+...++..++.+++.....+..+..
T Consensus 168 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~ 200 (443)
T 2y4o_A 168 MSGG-QTEKQVQLIRDFEPKIILVTPSYMLNLID 200 (443)
T ss_dssp CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred CCCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHH
Confidence 7654 78888899999999999999887766543
No 45
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=82.55 E-value=14 Score=38.73 Aligned_cols=120 Identities=8% Similarity=0.012 Sum_probs=84.4
Q ss_pred CCCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHhcCCEEEec
Q 006197 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL 131 (657)
Q Consensus 55 ~p~~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~-~~~~lA~~~~G~~~v~l 131 (657)
.|+.+|++... .|.+|..+ .+|.+.+...+..+.. ..++.++|+++..+|-...+ +..+++++..|+..+..
T Consensus 161 ~~~d~a~i~~T--SGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 161 NLDDIASIMFT--SGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV 235 (501)
T ss_dssp CTTSEEEEEEC--CTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEEC--CCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence 46677665541 56655544 6788888776655443 45889999999988876443 33467788899988877
Q ss_pred cCCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEec
Q 006197 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180 (657)
Q Consensus 132 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~ 180 (657)
+ ..+++.+...++..++.++......+..+..........++.+++-.
T Consensus 236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG 283 (501)
T 3ipl_A 236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGG 283 (501)
T ss_dssp S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECS
T ss_pred C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeC
Confidence 5 46788999999999999999999888777554433333566655543
No 46
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=79.29 E-value=8.3 Score=38.73 Aligned_cols=106 Identities=14% Similarity=0.079 Sum_probs=71.0
Q ss_pred CCCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh--HHHHHHHHHhcCCEEEe
Q 006197 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ--WVEAMEACNALSLICVP 130 (657)
Q Consensus 55 ~p~~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e--~~~~~lA~~~~G~~~v~ 130 (657)
.++.++.+... .|.+|..+ .+|...+...+..++..+...|+.++|+++..+|-+.. -....++++..|+.+++
T Consensus 89 ~~~~~a~i~~T--SGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~ 166 (369)
T 3hgu_A 89 PADSHPQVYES--GGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS 166 (369)
T ss_dssp CTTCCCEEEEE--CC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC
T ss_pred CccccEEEEEC--CCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC
Confidence 35555554431 56666654 56888888887777677777799999999999887322 23344555888985554
Q ss_pred ccCCCChh-----------------------HHHHHHhccCceEEEEcchhhhhhhc
Q 006197 131 LYDTLGPG-----------------------AVNFILDHAEIDFVFVQDKKVKELLS 164 (657)
Q Consensus 131 l~~~~~~~-----------------------~l~~~l~~~~~~~ii~~~~~~~~~~~ 164 (657)
.+ ..+. .+...++..++.+++.....+..+.+
T Consensus 167 ~~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~ 221 (369)
T 3hgu_A 167 ID--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLK 221 (369)
T ss_dssp CC--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTT
T ss_pred cc--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHh
Confidence 43 2333 66668899999999999888776644
No 47
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=73.84 E-value=18 Score=39.34 Aligned_cols=122 Identities=13% Similarity=0.022 Sum_probs=85.3
Q ss_pred CCCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH-HHHHHHHhcCCEEEec
Q 006197 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV-EAMEACNALSLICVPL 131 (657)
Q Consensus 55 ~p~~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~-~~~lA~~~~G~~~v~l 131 (657)
.|+.+|++... .|.+|..+ .+|.+.+...+. .....++.++|+++..++-+.+.- ..+++.+..|+..+..
T Consensus 162 ~~~d~a~iiyT--SGSTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 235 (620)
T 4dg8_A 162 AADQIAYINFS--SGTTGRPKAIACTHAGITRLCL----GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLN 235 (620)
T ss_dssp CTTSEEEEEEE--BSSSSSCEEEEEEHHHHHHHHS----SCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEEC--CCccccCeEEEEchHHHHHHHH----HHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeC
Confidence 35666654431 67766655 677877654332 223458899999999998876654 3478888999987776
Q ss_pred c-CCCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecCC
Q 006197 132 Y-DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182 (657)
Q Consensus 132 ~-~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 182 (657)
+ ....++.+...++..++..+.........+..........++.+++-...
T Consensus 236 ~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe~ 287 (620)
T 4dg8_A 236 DLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGGDI 287 (620)
T ss_dssp CSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSC
T ss_pred ccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChhhCCCccEEEEEeCc
Confidence 3 34678889999999999999999888776655444445667777665543
No 48
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=73.41 E-value=43 Score=35.42 Aligned_cols=121 Identities=7% Similarity=-0.083 Sum_probs=83.3
Q ss_pred CCCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH---HHHHHHhcCCEEE
Q 006197 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE---AMEACNALSLICV 129 (657)
Q Consensus 55 ~p~~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~---~~lA~~~~G~~~v 129 (657)
.|+.+|++... .|.+|..+ .+|.+.+...+..... ..++.++|+++..+|-+..+-. .+++.+..|+..+
T Consensus 180 ~~~d~a~i~~T--SGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 180 KSSDVAFLQLS--GGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CTTSEEEEEEC--CCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CcCceEEEEeC--CCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 45666665541 55555543 7889888776655443 3478899999998887654433 4788899999988
Q ss_pred eccCCCChhHHHHHHhccCceEEEEcchhhhhhhccc---cccccCceEEEEecC
Q 006197 130 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTS 181 (657)
Q Consensus 130 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~---~~~~~~~~~i~~~~~ 181 (657)
..+ ...++.+...++..++.++.........+.... ......++.+++-..
T Consensus 255 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~ 308 (539)
T 1mdb_A 255 LSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGA 308 (539)
T ss_dssp ECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESS
T ss_pred ECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCC
Confidence 764 457888899999999999999988776654432 123345666665443
No 49
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=73.39 E-value=14 Score=36.94 Aligned_cols=102 Identities=20% Similarity=0.102 Sum_probs=69.2
Q ss_pred CCCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHhcCCEEEec
Q 006197 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL 131 (657)
Q Consensus 55 ~p~~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~-~~~~lA~~~~G~~~v~l 131 (657)
++|.+|++... .|.+|..+ .+|.+.+...+..++. ..+++++|+++..+|-...+ +..++..+..|+..+..
T Consensus 35 ~~d~~a~Il~T--SGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~ 109 (358)
T 4gs5_A 35 LGGAREFVLHT--SGSTGMPKPITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVT 109 (358)
T ss_dssp HHTCSEEEEEE--ECTTSSEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCEEEEEC--CcccccCcEEEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEec
Confidence 34667665431 67777654 7899988776655544 45889999999988876443 33456667778877776
Q ss_pred cCCCChhHHHHHHhccCceEEEEcchhhhhhhc
Q 006197 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS 164 (657)
Q Consensus 132 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 164 (657)
++.... ...++..++..+......+..+.+
T Consensus 110 ~~~~~~---~~~i~~~~~t~~~~~P~~l~~ll~ 139 (358)
T 4gs5_A 110 EPTANP---LAGLDHADFDFVAMVPMQLQSILE 139 (358)
T ss_dssp CCCSCT---TTTCSSCCCSEEEECHHHHHHHHH
T ss_pred CccccH---HHHHHHhCCeEEEcChHHHHHhhc
Confidence 654322 345788899999988877766544
No 50
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=72.95 E-value=22 Score=37.82 Aligned_cols=120 Identities=12% Similarity=-0.012 Sum_probs=81.8
Q ss_pred CCCceeeecccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH--HHHHHHHhcCCEEEecc
Q 006197 57 GNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV--EAMEACNALSLICVPLY 132 (657)
Q Consensus 57 ~~~a~~~~~~~d~~~~~~--~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~--~~~lA~~~~G~~~v~l~ 132 (657)
+.+|++... .|.+|.. ..+|.+.+...+......+...++.++|+++..+|-...+- ..+++.+ .|+..+.++
T Consensus 192 ~d~a~i~~T--SGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~ 268 (548)
T 2d1s_A 192 EQVALIMNS--SGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT 268 (548)
T ss_dssp TCEEEEECC--SSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC
T ss_pred CCEEEEEeC--CCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC
Confidence 666665541 5555543 47899988777665544433357899999998888765443 3356777 999888775
Q ss_pred CCCChhHHHHHHhccCceEEEEcchhhhhhhcccc---ccccCceEEEEec
Q 006197 133 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFT 180 (657)
Q Consensus 133 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~~i~~~~ 180 (657)
...++.+...++..++.+++.....+..+..... .....++.+++-.
T Consensus 269 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG 318 (548)
T 2d1s_A 269 -KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGG 318 (548)
T ss_dssp -CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECS
T ss_pred -CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcC
Confidence 4678889999999999999999988776654321 1234556655543
No 51
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=71.40 E-value=24 Score=37.29 Aligned_cols=102 Identities=7% Similarity=-0.086 Sum_probs=71.0
Q ss_pred CCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH--HHHHHhcCCEEEec
Q 006197 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA--MEACNALSLICVPL 131 (657)
Q Consensus 56 p~~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~--~lA~~~~G~~~v~l 131 (657)
|+.+|++... .|.+|..+ .+|.+.+...+..++.. .++.++|+++..+|-...+-.. +++++ .|+..+..
T Consensus 169 ~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~ 242 (517)
T 3r44_A 169 GDDNLFIMYT--SGTTGHPKGVVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM 242 (517)
T ss_dssp TTSEEEEEEE--CC---CCEEEEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC
T ss_pred CCCeEEEEEC--CcccccCceeeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe
Confidence 4555554431 56666554 67888887776665544 4889999999988877554333 45555 88887776
Q ss_pred cCCCChhHHHHHHhccCceEEEEcchhhhhhhc
Q 006197 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS 164 (657)
Q Consensus 132 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 164 (657)
+....+.+...+...++.++.........+..
T Consensus 243 -~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 274 (517)
T 3r44_A 243 -PQFDATKVWSLIVEERVCIGGAVPAILNFMRQ 274 (517)
T ss_dssp -SSCCHHHHHHHHHHTTCCEEEECHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHh
Confidence 45678889999999999999999887766543
No 52
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=69.46 E-value=46 Score=35.95 Aligned_cols=120 Identities=10% Similarity=-0.038 Sum_probs=81.4
Q ss_pred CCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH---HHHHHHhcCCEEEe
Q 006197 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE---AMEACNALSLICVP 130 (657)
Q Consensus 56 p~~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~---~~lA~~~~G~~~v~ 130 (657)
|+.+|++... .|.+|..+ .+|.+.+...+...... .++.++|+++..+|-+..+-. .+++++..|+..+.
T Consensus 183 ~~~~a~ii~T--SGSTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~ 257 (617)
T 3rg2_A 183 ADEVAYFQLS--GGTTGTPKLIPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVL 257 (617)
T ss_dssp TTSEEEEEEC--CCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEE
T ss_pred CCCeEEEEEC--CCcCCCCCEeehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEE
Confidence 5666654431 56666544 67888887766655443 478899999999885544333 47888888998877
Q ss_pred ccCCCChhHHHHHHhccCceEEEEcchhhhhhhcccc-----ccccCceEEEEecC
Q 006197 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC-----RSAQRLRVMVCFTS 181 (657)
Q Consensus 131 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~ 181 (657)
.+. .....+...++..++.++.........+..... .....++.+++-..
T Consensus 258 ~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe 312 (617)
T 3rg2_A 258 AAD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGA 312 (617)
T ss_dssp CSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESS
T ss_pred eCC-CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCC
Confidence 654 467778889999999999999887765543221 13345666665544
No 53
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=69.25 E-value=21 Score=37.53 Aligned_cols=121 Identities=9% Similarity=-0.055 Sum_probs=79.9
Q ss_pred CCCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHhcCCEEEec
Q 006197 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL 131 (657)
Q Consensus 55 ~p~~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~-~~~~lA~~~~G~~~v~l 131 (657)
.++.+|++... .|.+|..+ .+|...+...+.... ...++.++|+++..+|-+..+ +..+++.+..|+..+.+
T Consensus 142 ~~~d~a~i~~T--SGTTG~PKgv~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 216 (512)
T 3fce_A 142 KGDENFYIIYT--SGSTGNPKGVQITYNCLVSFTKWAV---EDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAI 216 (512)
T ss_dssp CTTSEEEEEEE--CC----CEEEEEEHHHHHHHHHHHH---HHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEEC--CCCCCCCceEEEehHHHHHHHHHHH---HhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEEC
Confidence 34556554431 56666554 678888876655443 345889999999998876543 34578888999998887
Q ss_pred cCC--CChhHHHHHHhccCceEEEEcchhhhhhhcccc---ccccCceEEEEec
Q 006197 132 YDT--LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFT 180 (657)
Q Consensus 132 ~~~--~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~~i~~~~ 180 (657)
+.. ..++.+...++..++.+++........+..... .....++.+++-.
T Consensus 217 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G 270 (512)
T 3fce_A 217 DKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCG 270 (512)
T ss_dssp CHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECS
T ss_pred CHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEec
Confidence 653 467788899999999999999887766544321 2234556655544
No 54
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=68.43 E-value=28 Score=36.83 Aligned_cols=101 Identities=20% Similarity=0.157 Sum_probs=76.1
Q ss_pred CCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHHhcCcEEEEe
Q 006197 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (657)
Q Consensus 218 ~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~ 297 (657)
.++.++++... +| -.+|.+.+...+..+...+... ++.++|++...++-+. -.....+.++..|+..+.+
T Consensus 35 ~p~~~a~~~~~---~~----~~~Ty~el~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~-~~~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 35 HSSKPCLINGA---NG----DVYTYADVELTARRVASGLNKI--GIQQGDVIMLFLPSSP-EFVLAFLGASHRGAIITAA 104 (536)
T ss_dssp STTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSH-HHHHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEECC---CC----CEEEHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCcH-HHHHHHHHHHHhCCEEecc
Confidence 46777765432 22 3589999999888887766443 7899999999988763 2334566778899998887
Q ss_pred cC--ChHHHHHHHhhhcCeEEEechHHHHHHHH
Q 006197 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKIHE 328 (657)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~ 328 (657)
+. ....+...++..++.+++........+..
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 137 (536)
T 3ni2_A 105 NPFSTPAELAKHAKASRAKLLITQACYYEKVKD 137 (536)
T ss_dssp CTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHH
Confidence 75 78899999999999999998877666544
No 55
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=67.95 E-value=26 Score=37.54 Aligned_cols=104 Identities=3% Similarity=-0.169 Sum_probs=75.4
Q ss_pred CCCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH--HHHHHHhcCCEEEe
Q 006197 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE--AMEACNALSLICVP 130 (657)
Q Consensus 55 ~p~~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~--~~lA~~~~G~~~v~ 130 (657)
.|+.+|++... .|.+|..+ .+|.+.+...+..+.. ..++.++|+++..+|-...+-. .+++.+..|+..+.
T Consensus 165 ~~~d~a~i~~T--SGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~ 239 (590)
T 3kxw_A 165 KSNDIAFLQYT--SGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIM 239 (590)
T ss_dssp CTTSEEEEEEC--SSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEeC--cCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEE
Confidence 45667665541 56666544 7899988877666544 4588999999999988766543 37888899999888
Q ss_pred ccCCC---ChhHHHHHHhccCceEEEEcchhhhhhh
Q 006197 131 LYDTL---GPGAVNFILDHAEIDFVFVQDKKVKELL 163 (657)
Q Consensus 131 l~~~~---~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 163 (657)
.++.. .+..+...++..++.++.........+.
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~ 275 (590)
T 3kxw_A 240 MSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCV 275 (590)
T ss_dssp CCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHH
T ss_pred eCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHH
Confidence 76532 5677888999999999988776665543
No 56
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=67.74 E-value=42 Score=35.60 Aligned_cols=107 Identities=9% Similarity=-0.062 Sum_probs=77.5
Q ss_pred CCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHHhcCcEEEEe
Q 006197 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (657)
Q Consensus 218 ~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~ 297 (657)
.++.++++....+..+ -..-.+|.+.+...+..++..+... ++.++|++...++-+. -.....+.++..|+..+.+
T Consensus 32 ~p~~~A~~~~~~~~~~-~~~~~~Ty~el~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~G~~~vpl 107 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPS-EFPESMNFLEICEVTKKLASGISRK--GVRKGEHVGVCIPNSI-DYVMTIYALWRVAATPVPI 107 (549)
T ss_dssp HTTSEEEEEESSCCCC-SSCSEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEeCCCcccc-cccceeeHHHHHHHHHHHHHHHHHc--CCCCCCEEEEECCCCH-HHHHHHHHHHHhCCEEEcc
Confidence 3567776655322111 1124689999999888887766433 7899999999988763 2334566778999998887
Q ss_pred cC--ChHHHHHHHhhhcCeEEEechHHHHHHHH
Q 006197 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKIHE 328 (657)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~ 328 (657)
+. ....+...+++.++++++..+.....+..
T Consensus 108 ~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~ 140 (549)
T 3g7s_A 108 NPMYKSFELEHILNDSEATTLVVHSMLYENFKP 140 (549)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHH
Confidence 75 78899999999999999998877665543
No 57
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=66.70 E-value=39 Score=35.84 Aligned_cols=103 Identities=11% Similarity=-0.040 Sum_probs=73.7
Q ss_pred CCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH---HHHHHHhcCCEEEe
Q 006197 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE---AMEACNALSLICVP 130 (657)
Q Consensus 56 p~~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~---~~lA~~~~G~~~v~ 130 (657)
|+.+|++... .|.+|..+ .+|.+.+...+...+. ..++.++|+++..+|....+-. .+++.+..|+..+.
T Consensus 190 ~~d~a~i~~T--SGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~ 264 (544)
T 3o83_A 190 ADEVAFFQLS--GGSTGTPKLIPRTHNDYDYSVRASAE---ICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVM 264 (544)
T ss_dssp TTSEEEEEEC--CC--CCCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEE
T ss_pred ccceEEEEEC--CCcccCCceEEechHHHHHHHHHHHH---HhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEE
Confidence 5666665441 56555544 6789888777666554 3488999999999886654433 47888899998877
Q ss_pred ccCCCChhHHHHHHhccCceEEEEcchhhhhhhc
Q 006197 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS 164 (657)
Q Consensus 131 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 164 (657)
.+. .....+...++..++..+.........+..
T Consensus 265 ~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 297 (544)
T 3o83_A 265 APN-PEPLNCFSIIQRHQVNMASLVPSAVIMWLE 297 (544)
T ss_dssp CSS-CCHHHHHHHHHHHTCCEEEECHHHHHHHHH
T ss_pred CCC-CCHHHHHHHHHHHCCCEEEechHHHHHHHh
Confidence 654 567788889999999999999887765543
No 58
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=65.51 E-value=31 Score=36.26 Aligned_cols=98 Identities=12% Similarity=-0.037 Sum_probs=75.2
Q ss_pred CCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHHhcCcEEEEe
Q 006197 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (657)
Q Consensus 218 ~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~ 297 (657)
.++.++++. ..-.+|.+.+...+..+...+... ++.++|++...++-+. -.....+.++..|+..+.+
T Consensus 19 ~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~Ga~~vpl 86 (509)
T 3ivr_A 19 FPDRTAFMV---------DGVRLTHRDYLARAERLASGLLRD--GVHTGDRVAILSQNCS-EMIELIGAVALIGAILLPV 86 (509)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSCH-HHHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCCH-HHHHHHHHHHHhCCEEEec
Confidence 466777654 124689999999998887766443 7889999999988763 2334566778899998887
Q ss_pred cC--ChHHHHHHHhhhcCeEEEechHHHHHHH
Q 006197 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKIH 327 (657)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~ 327 (657)
+. ....+...+++.++.+++..+.....+.
T Consensus 87 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 118 (509)
T 3ivr_A 87 NYRLNADEIAFVLGDGAPSVVVAGTDYRDIVA 118 (509)
T ss_dssp CTTSCHHHHHHHHHHHCEEEEEECSTTHHHHH
T ss_pred CCCCCHHHHHHHHHhcCceEEEECcchhhhHH
Confidence 76 7889999999999999999887665543
No 59
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=64.99 E-value=50 Score=35.24 Aligned_cols=121 Identities=12% Similarity=-0.054 Sum_probs=80.0
Q ss_pred CCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH--HHHHHHhcCCEEEec
Q 006197 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE--AMEACNALSLICVPL 131 (657)
Q Consensus 56 p~~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~--~~lA~~~~G~~~v~l 131 (657)
|+.+|++... .|.+|..+ .+|.+ +...... ......++.++|++...+|-+..+-. .+++.+..|+..+..
T Consensus 205 ~~d~a~i~~T--SGTTG~PKgV~~sh~-~~~~~~~--~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~ 279 (570)
T 3c5e_A 205 SQEASAIYFT--SGTSGLPKMAEHSYS-SLGLKAK--MDAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVH 279 (570)
T ss_dssp TTSEEEEEEC--CCSSSSCCEEEEEHH-HHHHHHH--HHTTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEE
T ss_pred CCCcEEEEEC--CCCCCCCCEEEechH-HHHhhhh--hhhhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEe
Confidence 4566655431 56666544 67777 4331111 11244588999999998887755433 467888889887776
Q ss_pred cC-CCChhHHHHHHhccCceEEEEcchhhhhhhcccc--ccccCceEEEEecC
Q 006197 132 YD-TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC--RSAQRLRVMVCFTS 181 (657)
Q Consensus 132 ~~-~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~--~~~~~~~~i~~~~~ 181 (657)
+. ...+..+...++..++.+++.....+..+..... .....++.+++...
T Consensus 280 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe 332 (570)
T 3c5e_A 280 LLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGE 332 (570)
T ss_dssp CCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESS
T ss_pred cCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccccccccccceEEEEcCC
Confidence 53 6678899999999999999999988877755321 12345666665544
No 60
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=64.89 E-value=45 Score=34.98 Aligned_cols=120 Identities=8% Similarity=-0.132 Sum_probs=81.9
Q ss_pred CCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH-HHHHHHHhcCCEEEecc
Q 006197 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV-EAMEACNALSLICVPLY 132 (657)
Q Consensus 56 p~~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~-~~~lA~~~~G~~~v~l~ 132 (657)
++.+|++... .|.+|..+ .+|.+.+...+..+. ...++.++|+++..+|-+..+- ..+++++..|+..+.++
T Consensus 142 ~~~~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~ 216 (511)
T 3e7w_A 142 EHETFYIIYT--SGSTGNPKGVQISAANLQSFTDWIC---ADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVT 216 (511)
T ss_dssp TTSEEEEEEE--CCTTSSCEEEEEEHHHHHHHHHHHH---HHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECC
T ss_pred CCCeEEEEEC--CCCCCCCCEEEEcHHHHHHHHHHHH---HhcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcC
Confidence 4556554431 56666654 678888876665444 3457899999999988775543 45788899999988775
Q ss_pred CC--CChhHHHHHHhccCceEEEEcchhhhhhhcccc---ccccCceEEEEec
Q 006197 133 DT--LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFT 180 (657)
Q Consensus 133 ~~--~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~~i~~~~ 180 (657)
.. ..+..+...++..++.+++........+..... .....++.++...
T Consensus 217 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G 269 (511)
T 3e7w_A 217 KDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCG 269 (511)
T ss_dssp HHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECS
T ss_pred hhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEec
Confidence 42 456778899999999999999987776554321 2234455555443
No 61
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=64.59 E-value=48 Score=35.07 Aligned_cols=101 Identities=10% Similarity=-0.127 Sum_probs=74.4
Q ss_pred CCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHHhcCcEEEEe
Q 006197 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (657)
Q Consensus 218 ~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~ 297 (657)
.++.++++....+ ..-.+|.+.+...+..+...+... ++.++|++...++-+. -.....+.++..|+..+.+
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~--Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Gav~vpl 102 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRAL--GVGVGDRVATLGFNHF-RHLEAYFAVPGMGAVLHTA 102 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCcH-HHHHHHHHHHhcCcEEEec
Confidence 3456666543211 245689999998888887766432 7889999999988663 2334466778899998887
Q ss_pred cC--ChHHHHHHHhhhcCeEEEechHHHHHH
Q 006197 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKI 326 (657)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l 326 (657)
+. ....+...+++.++.+++..+.....+
T Consensus 103 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 103 NPRLSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred CcccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 76 788999999999999999988765543
No 62
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=63.25 E-value=17 Score=38.74 Aligned_cols=88 Identities=10% Similarity=0.009 Sum_probs=69.4
Q ss_pred eeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHHhcCcEEEEecC--ChHHHHHHHhhhcCeE
Q 006197 238 VVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTL 315 (657)
Q Consensus 238 v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~ 315 (657)
..+|.+.+...+..++..+... ++.++|++...++-+. -.....+.++..|+..+.++. ....+...++..++++
T Consensus 49 ~~~Ty~el~~~~~~lA~~L~~~--Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ 125 (550)
T 3rix_A 49 VNITYAEYFEMSVRLAEAMKRY--GLNTNHRIVVCSENSL-QFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTV 125 (550)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHH--TCCTTCEEEEECSSCT-TTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSE
T ss_pred cEeEHHHHHHHHHHHHHHHHHh--CCCCCCEEEEEcCCcc-cHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeE
Confidence 3689999999888887766443 7899999999988663 223346677889999887765 7889999999999999
Q ss_pred EEechHHHHHHHH
Q 006197 316 LAGVPRVFEKIHE 328 (657)
Q Consensus 316 l~~~p~~~~~l~~ 328 (657)
++........+..
T Consensus 126 vi~~~~~~~~~~~ 138 (550)
T 3rix_A 126 VFVSKKGLQKILN 138 (550)
T ss_dssp EEECGGGHHHHHH
T ss_pred EEEcHHHHHHHHH
Confidence 9998887766544
No 63
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=62.97 E-value=32 Score=36.79 Aligned_cols=121 Identities=9% Similarity=-0.003 Sum_probs=84.7
Q ss_pred CCCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh-HHHHHHHHHhcCCEEEec
Q 006197 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ-WVEAMEACNALSLICVPL 131 (657)
Q Consensus 55 ~p~~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e-~~~~~lA~~~~G~~~v~l 131 (657)
.|+.+|++... .|.+|..+ .+|.+.+...+.. ....++.++|+++..+|-+.+ ....+++.+..|+..+..
T Consensus 212 ~~~d~a~i~~T--SGTTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 285 (570)
T 4gr5_A 212 GPEDVACVMFT--SGSTGRPKGVMSPHRALTGTYLG----QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQ 285 (570)
T ss_dssp CTTSEEEEECC--SSCCSSCCCEEEEHHHHHHHHSS----CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEEC--CcCCCCCeEEEEecHHHHHHHHh----hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEc
Confidence 45667665541 55555544 6788777433221 223478999999999887643 445678888999988877
Q ss_pred cC-CCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecC
Q 006197 132 YD-TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181 (657)
Q Consensus 132 ~~-~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 181 (657)
+. ...+..+...+++.++.++.........+..........++.+++-..
T Consensus 286 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~lr~~~~gG~ 336 (570)
T 4gr5_A 286 SGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAFEGVRYAITGGE 336 (570)
T ss_dssp SSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESS
T ss_pred CCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchhhCCCceEEEEecc
Confidence 54 456778999999999999999998887776655555567777766554
No 64
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=58.78 E-value=56 Score=34.16 Aligned_cols=98 Identities=15% Similarity=0.038 Sum_probs=70.7
Q ss_pred CCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHHhcCcEEEEe
Q 006197 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (657)
Q Consensus 218 ~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~ 297 (657)
.++.++++... + +..+|.+.+...+..+...+... ++.++|++...++-+.- .....+.++..|+..+.+
T Consensus 15 ~p~~~a~~~~~---~----~~~~Ty~el~~~~~~~A~~L~~~--Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl 84 (504)
T 1t5h_X 15 APDHCALAVPA---R----GLRLTHAELRARVEAVAARLHAD--GLRPQQRVAVVAPNSAD-VVIAILALHRLGAVPALL 84 (504)
T ss_dssp CTTSEEEEETT---T----TEEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSCHH-HHHHHHHHHHHTCEEEEE
T ss_pred CCCceEEEEcC---C----CceeEHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCCHH-HHHHHHHHHHhCcEEEec
Confidence 35666765421 1 25689999999888887766433 78899999999887642 234566778899998877
Q ss_pred cC--ChHHHHHHHhhhcCeEEEe--chHHHHH
Q 006197 298 HG--DLNALRDDLMELKPTLLAG--VPRVFEK 325 (657)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~--~p~~~~~ 325 (657)
+. ....+...+++.++++++. .+.....
T Consensus 85 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~ 116 (504)
T 1t5h_X 85 NPRLKSAELAELIKRGEMTAAVIAVGRQVADA 116 (504)
T ss_dssp CTTSCHHHHHHHHHHTTCSEEEECC--CHHHH
T ss_pred CCccChHHHHHHHhhcCCcEEEEecchhhhhh
Confidence 76 7888999999999999888 5554443
No 65
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=58.06 E-value=57 Score=35.63 Aligned_cols=98 Identities=17% Similarity=0.201 Sum_probs=72.9
Q ss_pred CCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcc-cccCCCCCCcEEEEecChhHHHHHHHHHHHHhcCcEEEE
Q 006197 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGY 296 (657)
Q Consensus 218 ~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~-~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~ 296 (657)
.++.+|++.... .+| ....+|.+.+...+..++..+. .. ++.++|++...+|... -....++.++..|+..+.
T Consensus 95 ~pd~~Al~~~~~-~~~--~~~~~TY~eL~~~v~~lA~~L~~~~--Gv~~Gd~V~i~~~~~~-e~v~a~lA~~~~Gav~vp 168 (663)
T 1ry2_A 95 TPNKKAIIFEGD-EPG--QGYSITYKELLEEVCQVAQVLTYSM--GVRKGDTVAVYMPMVP-EAIITLLAISRIGAIHSV 168 (663)
T ss_dssp CTTSEEEEEECS-STT--CCEEEEHHHHHHHHHHHHHHHHHTS--CCCTTCEEEECCCSSH-HHHHHHHHHHHTTCEEEE
T ss_pred CCCceEEEEEcC-CCC--ceEEEEHHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEcCCCH-HHHHHHHHHHHcCCEEEe
Confidence 467777765432 122 2356899999998888877664 32 7899999999998774 233456777889998877
Q ss_pred ecC--ChHHHHHHHhhhcCeEEEechH
Q 006197 297 YHG--DLNALRDDLMELKPTLLAGVPR 321 (657)
Q Consensus 297 ~~~--~~~~~~~~i~~~~~t~l~~~p~ 321 (657)
+.. ....+...+++.++.+++....
T Consensus 169 l~~~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 169 VFAGFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEEESB
T ss_pred eCCCCCHHHHHHHHHhcCCeEEEEccc
Confidence 665 7899999999999999988654
No 66
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=57.64 E-value=74 Score=32.76 Aligned_cols=106 Identities=12% Similarity=-0.006 Sum_probs=75.8
Q ss_pred CCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHHhcCcEEEEe
Q 006197 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (657)
Q Consensus 218 ~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~ 297 (657)
.++.++++.........-....+|.+.+...+..++..+... +. ++|++...++-.. -.....+.++..|+..+.+
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~--g~-~gd~V~i~~~n~~-e~~~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRC--GS-TGDRVVISAPQGL-EYVVAFLGALQAGRIAVPL 112 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTS--SC-TTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhc--CC-CCCEEEEEcCCcH-HHHHHHHHHHHhCcEEEee
Confidence 467778776542211111346799999999999988877543 44 8999998887663 2234566778899998877
Q ss_pred cC-----ChHHHHHHHhhhcCeEEEechHHHHHHH
Q 006197 298 HG-----DLNALRDDLMELKPTLLAGVPRVFEKIH 327 (657)
Q Consensus 298 ~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~ 327 (657)
.. ....+...+++.++.+++..+.....+.
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~ 147 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVV 147 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHH
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHH
Confidence 53 4678899999999999999887766554
No 67
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=55.57 E-value=65 Score=34.27 Aligned_cols=95 Identities=8% Similarity=-0.016 Sum_probs=70.9
Q ss_pred CCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHHhcCcEEEEe
Q 006197 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (657)
Q Consensus 218 ~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~ 297 (657)
.++.++++. . .-.+|.+.+...+..+...+... ++.++|++...++-+. -.....+.++..|+..+.+
T Consensus 52 ~p~~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Gav~vpl 119 (563)
T 1amu_A 52 RPNNVAIVC-E--------NEQLTYHELNVKANQLARIFIEK--GIGKDTLVGIMMEKSI-DLFIGILAVLKAGGAYVPI 119 (563)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEe-C--------CceecHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEeCCCH-HHHHHHHHHHHhCCEEEEe
Confidence 456677653 1 23689999988888877765433 7889999999888763 2334466778899998887
Q ss_pred cC--ChHHHHHHHhhhcCeEEEechHHHH
Q 006197 298 HG--DLNALRDDLMELKPTLLAGVPRVFE 324 (657)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~p~~~~ 324 (657)
+. ....+...+++.++.+++..+....
T Consensus 120 ~~~~~~~~l~~il~~~~~~~li~~~~~~~ 148 (563)
T 1amu_A 120 DIEYPKERIQYILDDSQARMLLTQKHLVH 148 (563)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHH
T ss_pred CCCCcHHHHHHHHHhcCCCEEEEcCchhh
Confidence 76 7888999999999999998876543
No 68
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=54.07 E-value=60 Score=35.33 Aligned_cols=122 Identities=9% Similarity=0.014 Sum_probs=81.7
Q ss_pred CCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH--HHHHHHHhcCCEEEec
Q 006197 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV--EAMEACNALSLICVPL 131 (657)
Q Consensus 56 p~~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~--~~~lA~~~~G~~~v~l 131 (657)
|+.++++... .|.+|..+ .+|.+.+...+.... -...+++++|++....+-+...- ..+++.+..|+..+..
T Consensus 255 ~~d~a~ilyT--SGTTG~PKgV~~sh~~~~~~~~~~~--~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~ 330 (652)
T 1pg4_A 255 AEDPLFILYT--SGSTGKPKGVLHTTGGYLVYAATTF--KYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMF 330 (652)
T ss_dssp TTSEEEEEEE--CCSSSSCEEEEEESHHHHHHHHHHH--HHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEE
T ss_pred CCCCEEEEec--cCCCCCCceEEECchHHHHHHHHHH--HHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEE
Confidence 4555554431 67676655 567776654432211 12357899999988888775543 3467889999998887
Q ss_pred cCC---CChhHHHHHHhccCceEEEEcchhhhhhhcccc-----ccccCceEEEEecC
Q 006197 132 YDT---LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC-----RSAQRLRVMVCFTS 181 (657)
Q Consensus 132 ~~~---~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~ 181 (657)
+.. ..++.+..++++.++.++.+....+..+..... .....++.+++...
T Consensus 331 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe 388 (652)
T 1pg4_A 331 EGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGE 388 (652)
T ss_dssp CSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESS
T ss_pred CCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecC
Confidence 642 367789999999999999999988876655432 12345666666544
No 69
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=52.85 E-value=60 Score=34.71 Aligned_cols=97 Identities=9% Similarity=0.026 Sum_probs=73.2
Q ss_pred CCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHHhcCcEEEEe
Q 006197 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (657)
Q Consensus 218 ~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~ 297 (657)
.++.++++..... | ....+|.+.+...+..++..+... ++.++|++...++-..- .....+.++..|+..+.+
T Consensus 69 ~pd~~Al~~~~~~--g--~~~~~Ty~eL~~~~~~~A~~L~~~--Gv~~Gd~V~l~~~~~~e-~~~~~lA~~~~Gav~vpl 141 (580)
T 3etc_A 69 SPEKLAMIWCDDY--G--NEKIFTFKDLKYYSDKAANFFVKH--GIGKGDYVMLTLKSRYD-FWYCMLGLHKLGAIAVPA 141 (580)
T ss_dssp CTTCEEEEEEESS--S--CEEEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECTTCTH-HHHHHHHHHHHTCEEEEC
T ss_pred CCCCEEEEEEcCC--C--CEeEEeHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCCHH-HHHHHHHHHhCCEEEEeC
Confidence 5678887765321 2 246789999999888887766433 78999999999887642 233466678899998877
Q ss_pred cC--ChHHHHHHHhhhcCeEEEechH
Q 006197 298 HG--DLNALRDDLMELKPTLLAGVPR 321 (657)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~p~ 321 (657)
.. ....+...+++.++.+++..+.
T Consensus 142 ~~~~~~~~l~~~l~~~~~~~ii~~~~ 167 (580)
T 3etc_A 142 THMLKTRDIVYRIEKAGLKMIVCIAE 167 (580)
T ss_dssp CTTCCHHHHHHHHHHHTCCEEEEESS
T ss_pred CccCCHHHHHHHHHhcCCCEEEEecc
Confidence 65 7889999999999999988654
No 70
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=50.83 E-value=58 Score=32.05 Aligned_cols=65 Identities=8% Similarity=-0.018 Sum_probs=47.9
Q ss_pred HHHcC-CCCCCEEEEEeCCchhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcch
Q 006197 93 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (657)
Q Consensus 93 L~~~G-~~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 157 (657)
..+.| +++|++|.+....+=.-..+.++|...|..++.+-|......-...++..+++++++...
T Consensus 62 a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 62 AEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 34555 588988655555566677778888888998777666555556677889999999999764
No 71
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=50.03 E-value=48 Score=34.88 Aligned_cols=87 Identities=7% Similarity=-0.118 Sum_probs=67.8
Q ss_pred eeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHHhcCcEEEEecC--ChHHHHHHHhhhcCeE
Q 006197 238 VVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTL 315 (657)
Q Consensus 238 v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~ 315 (657)
..+|...+...+..+...+... ++.++|++...++-+.- .....+.++..|+..+.++. ....+...+++.++.+
T Consensus 47 ~~~Ty~el~~~~~~lA~~L~~~--Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 123 (529)
T 2v7b_A 47 GSTTYGELEERARRFASALRTL--GVHPEERILLVMLDTVA-LPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARA 123 (529)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSTH-HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSE
T ss_pred CCccHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCcHH-HHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeE
Confidence 3589999999888887766433 78899999999887642 23446677889999887775 7889999999999999
Q ss_pred EEechHHHHHHH
Q 006197 316 LAGVPRVFEKIH 327 (657)
Q Consensus 316 l~~~p~~~~~l~ 327 (657)
++..+.....+.
T Consensus 124 vi~~~~~~~~~~ 135 (529)
T 2v7b_A 124 VIASGALVQNVT 135 (529)
T ss_dssp EEEEGGGHHHHH
T ss_pred EEechhhhhHHH
Confidence 999887665543
No 72
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=49.09 E-value=96 Score=32.34 Aligned_cols=103 Identities=10% Similarity=-0.095 Sum_probs=72.2
Q ss_pred CCCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH--HHHHHHHHhcCCEEEe
Q 006197 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW--VEAMEACNALSLICVP 130 (657)
Q Consensus 55 ~p~~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~--~~~~lA~~~~G~~~v~ 130 (657)
.|+.+|++... .|.+|..+ .+|.+.+...+..+...+ ++.++|+++..+|..... +..+++.+..|+..+.
T Consensus 153 ~~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~ 227 (505)
T 3nyq_A 153 DDGDPALVVYT--SGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRH 227 (505)
T ss_dssp CTTSEEEEEEE--CCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEeC--CCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEE
Confidence 35566654441 56666654 778998887777665544 788999998888765333 3357888899999877
Q ss_pred ccCCCChhHHHHHHhccCceEEEEcchhhhhhhc
Q 006197 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS 164 (657)
Q Consensus 131 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 164 (657)
.. ....+.+...+ ..++..++........+..
T Consensus 228 ~~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 228 LG-RFSTEGAAREL-NDGATMLFGVPTMYHRIAE 259 (505)
T ss_dssp CS-SCCHHHHHHHH-TTTCCEEEECHHHHHHHHH
T ss_pred CC-CCChHHHHHHH-hhCCeEEEehHHHHHHHHH
Confidence 74 45666666667 6789999988887766544
No 73
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=47.95 E-value=43 Score=40.02 Aligned_cols=121 Identities=9% Similarity=-0.034 Sum_probs=83.9
Q ss_pred CCCCCceeeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH-HHHHHHhcCCEEEec
Q 006197 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE-AMEACNALSLICVPL 131 (657)
Q Consensus 55 ~p~~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~-~~lA~~~~G~~~v~l 131 (657)
.|+.+|++... .|.+|..+ .+|.+.+... .......++.++|+++...+-+.+..+ -+++.+..|+..+..
T Consensus 605 ~~~~~ayiiyT--SGSTG~PKgV~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~ 678 (1304)
T 2vsq_A 605 DPNDPAYIMYT--SGTTGKPKGNITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIA 678 (1304)
T ss_dssp CTTSEEEEEEE--CCSSSSCEEEEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEeC--CCCCCCCCEEEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEEC
Confidence 46666654431 67777655 6788777532 222233488999999998888776544 478888899988877
Q ss_pred cC--CCChhHHHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecC
Q 006197 132 YD--TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181 (657)
Q Consensus 132 ~~--~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 181 (657)
++ ..+++.+...+...++.++.........+..........++.+++-.+
T Consensus 679 ~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~lr~~~~gGe 730 (1304)
T 2vsq_A 679 DEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGE 730 (1304)
T ss_dssp CGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHHHHTCSEEEEESS
T ss_pred ChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhcCCCccEEEEecC
Confidence 65 356788999999999999999988777665433333456677666554
No 74
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=45.97 E-value=49 Score=34.60 Aligned_cols=85 Identities=14% Similarity=0.050 Sum_probs=67.0
Q ss_pred eechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHHhcCcEEEEecC--ChHHHHHHHhhhcCeEE
Q 006197 239 VLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLL 316 (657)
Q Consensus 239 ~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l 316 (657)
.+|.+.+...+..+...+... ++.++|++...++-+. -.....+.++..|+..+.++. ....+...+++.++.++
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~v 104 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVAR--GLQVGDRVAAQTEKSV-EALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIV 104 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSCH-HHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEE
T ss_pred EEEHHHHHHHHHHHHHHHHHc--CCCCCCEEEEECCCCH-HHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEE
Confidence 589999999888887766433 7899999999988763 233456677899999888776 78899999999999999
Q ss_pred EechHHHHHH
Q 006197 317 AGVPRVFEKI 326 (657)
Q Consensus 317 ~~~p~~~~~l 326 (657)
+..+.....+
T Consensus 105 i~~~~~~~~~ 114 (503)
T 4fuq_A 105 VCDPSKRDGI 114 (503)
T ss_dssp EECGGGTTTT
T ss_pred EECchhhHHH
Confidence 9987655443
No 75
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=45.22 E-value=75 Score=31.38 Aligned_cols=71 Identities=8% Similarity=-0.043 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcch
Q 006197 87 LQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (657)
Q Consensus 87 ~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 157 (657)
+.+.....+.-+++|.+..+....+=.-+.+.++|...|..++.+-|...+..-...++..++++++++..
T Consensus 72 ~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 72 AMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 34444333333688877666777777788889999999998888777766667778899999999998754
No 76
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=42.50 E-value=1.2e+02 Score=32.09 Aligned_cols=113 Identities=6% Similarity=-0.164 Sum_probs=76.0
Q ss_pred CCCCCCce--EeeHHHHHHHHHHHHHHHH-----HcCCCCCCEEEEEeCCchhHH-HHHHHHHhcCCEEEeccCCCChhH
Q 006197 68 DGKFGPYV--WKTYKEVYEEVLQIVSALR-----ASGAEPGCRVGIYGANCPQWV-EAMEACNALSLICVPLYDTLGPGA 139 (657)
Q Consensus 68 d~~~~~~~--~~Ty~el~~~v~~lA~~L~-----~~G~~~gd~V~i~~~n~~e~~-~~~lA~~~~G~~~v~l~~~~~~~~ 139 (657)
.|.+|..+ .+|.+.+...+..++..+. ...+...+++....+...+.. ..++..+..|+..+........+.
T Consensus 184 SGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~ 263 (562)
T 3ite_A 184 SGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDD 263 (562)
T ss_dssp CC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHS
T ss_pred CCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHH
Confidence 66666655 6799999888888777654 235777888888877766543 346778888988776654434466
Q ss_pred HHHHHhccCceEEEEcchhhhhhhccccccccCceEEEEecC
Q 006197 140 VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181 (657)
Q Consensus 140 l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 181 (657)
+...++..++.++......+...... ......++.+++-..
T Consensus 264 ~~~~i~~~~~t~~~~~P~~l~~~~~~-~~~~~~lr~~~~gG~ 304 (562)
T 3ite_A 264 LPRTFRELGVTHAGIVPSLLDQTGLV-PEDAPHLVYLGVGGE 304 (562)
T ss_dssp HHHHHHHTTCCEEEECHHHHHHHTCC-GGGSTTCCEEEEESS
T ss_pred HHHHHHHcCCCEEEcCHHHHhhcccC-ccccCceEEEEEecC
Confidence 78889999999999988876654322 223456666655443
No 77
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=42.28 E-value=89 Score=35.91 Aligned_cols=99 Identities=16% Similarity=0.116 Sum_probs=74.5
Q ss_pred CCCceEEEEecCCCCCCCceeeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHHhcCcEEEEe
Q 006197 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (657)
Q Consensus 218 ~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~ 297 (657)
.++.++++... +| -.+|.+.+...+..+...+... ++.++|++...++-+. -.....+.++..|+..+.+
T Consensus 74 ~pd~~Al~~~~---~~----~~~TY~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~ns~-e~~v~~lA~~~~Ga~~vpl 143 (979)
T 3tsy_A 74 FATKPCLINGP---TG----HVYTYSDVHVISRQIAANFHKL--GVNQNDVVMLLLPNCP-EFVLSFLAASFRGATATAA 143 (979)
T ss_dssp TTTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECSSCH-HHHHHHHHHHHHTCEEEEE
T ss_pred CCCCeEEEECC---CC----cEEEHHHHHHHHHHHHHHHHHc--CCCCcCEEEEEeCCCH-HHHHHHHHHHHcCCEEEee
Confidence 46777766432 22 4589999998888887766433 7899999999998763 2334566778999998887
Q ss_pred cC--ChHHHHHHHhhhcCeEEEechHHHHHH
Q 006197 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKI 326 (657)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l 326 (657)
+. ....+...+++.++.+++..+.....+
T Consensus 144 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 174 (979)
T 3tsy_A 144 NPFFTPAEIAKQAKASNTKLIITEARYVDKI 174 (979)
T ss_dssp CTTSCHHHHHHHHHHHTEEEEEECSTTTTTS
T ss_pred CCCCCHHHHHHHHHHcCCeEEEEChHHHHHH
Confidence 75 788999999999999999887655443
No 78
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=39.32 E-value=1e+02 Score=32.23 Aligned_cols=81 Identities=11% Similarity=0.015 Sum_probs=62.0
Q ss_pred eeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHHhcCcEEEEecC--ChHHHHHHHhhhcCeE
Q 006197 238 VVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTL 315 (657)
Q Consensus 238 v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~ 315 (657)
-.+|.+.+...+..+...+... ++.++|++...++-.. -.....+.++..|+..+.++. ....+...++..++++
T Consensus 28 ~~~Ty~el~~~~~~lA~~L~~~--g~~~gd~V~i~~~n~~-~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ 104 (521)
T 3l8c_A 28 ERRTYGQLKRDSDSIAAFIDSL--ALLAKSPVLVFGAQTY-DMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSL 104 (521)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHT--CCCTTCCEEEEECSSH-HHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSE
T ss_pred CeecHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEeCCCH-HHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCE
Confidence 3489999998888887766433 6889999988887663 233456677889998887765 7889999999999999
Q ss_pred EEechH
Q 006197 316 LAGVPR 321 (657)
Q Consensus 316 l~~~p~ 321 (657)
++....
T Consensus 105 ii~~~~ 110 (521)
T 3l8c_A 105 IIAIEE 110 (521)
T ss_dssp EEESSC
T ss_pred EEecCc
Confidence 987543
No 79
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=33.58 E-value=1.5e+02 Score=31.23 Aligned_cols=86 Identities=9% Similarity=-0.128 Sum_probs=66.4
Q ss_pred eeechHhHHHhhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHHhcCcEEEEecC--C-------hHHHHHHH
Q 006197 238 VVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--D-------LNALRDDL 308 (657)
Q Consensus 238 v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~v~~~~--~-------~~~~~~~i 308 (657)
-.+|.+.+...+..+...+... ++.++|++...++-+. -.....+.++..|+..+.++. . ...+...+
T Consensus 48 ~~~Ty~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l 124 (576)
T 3gqw_A 48 DQLEYQTLKARAEAGAKRLLSL--NLKKGDRVALIAETSS-EFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLL 124 (576)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHT--CCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHH
T ss_pred eEEcHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCcH-HHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHH
Confidence 5689999999988887766433 7889999999988764 233456777899999887754 2 57888899
Q ss_pred hhhcCeEEEechHHHHHH
Q 006197 309 MELKPTLLAGVPRVFEKI 326 (657)
Q Consensus 309 ~~~~~t~l~~~p~~~~~l 326 (657)
+..++.+++........+
T Consensus 125 ~~~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 125 ASCQPAAIITGDEWLPLV 142 (576)
T ss_dssp HHHCCSEEEECGGGHHHH
T ss_pred HhcCCCEEEecHHHHHHH
Confidence 999999999887765544
No 80
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=33.02 E-value=2e+02 Score=26.02 Aligned_cols=52 Identities=8% Similarity=-0.004 Sum_probs=35.9
Q ss_pred cEEEEecCh--hHHHHHHHH-HHHHhcCcEEEEecC--ChHHHHHHHhhhcCeEEEe
Q 006197 267 DVYLSFLPL--AHILDRVIE-EYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAG 318 (657)
Q Consensus 267 d~~l~~~pl--~~~~g~~~~-~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~ 318 (657)
.+++...+. .|..|.... ...-..|..++.... +++.+.+.+.+++++++..
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l 149 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLL 149 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEE
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEE
Confidence 344444443 377777654 334556777776654 8999999999999998777
No 81
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=30.02 E-value=1.6e+02 Score=27.86 Aligned_cols=63 Identities=14% Similarity=0.159 Sum_probs=49.5
Q ss_pred HHHHHHHHcCCCCCceeeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH
Q 006197 46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV 115 (657)
Q Consensus 46 ~~l~~~a~~~p~~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~ 115 (657)
.++.+..+..|+..++.+. |...-.|-..|..++.+.+.+.+..|.+.|++ ..++.-|+...+
T Consensus 19 tv~~~i~~~lP~~~~iy~~---D~a~~PYG~ks~~~i~~~~~~~~~~L~~~g~~----~IVIACNTa~~~ 81 (269)
T 3ist_A 19 TVVREVLKQLPHEQVYYLG---DTARCPYGPRDKEEVAKFTWEMTNFLVDRGIK----MLVIACNTATAA 81 (269)
T ss_dssp HHHHHHHHHCTTCCEEEEE---CGGGCCCTTSCHHHHHHHHHHHHHHHHHTTCS----EEEECCHHHHHH
T ss_pred HHHHHHHHHCCCCcEEEEe---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC----EEEEeCCCccHH
Confidence 3566666788999999888 77777777889999999999999999998763 555555665543
No 82
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=29.22 E-value=2e+02 Score=29.36 Aligned_cols=63 Identities=10% Similarity=0.018 Sum_probs=47.0
Q ss_pred HHcC-CCCCCEEEEEeCCchhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcc
Q 006197 94 RASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (657)
Q Consensus 94 ~~~G-~~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 156 (657)
.+.| +++|....+....+=.-..+.++|...|..++.+-|......-...++..++++++++.
T Consensus 166 ~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 166 EQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 4556 57776555555566677777888999999887776665556667788999999999974
No 83
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=28.28 E-value=2.4e+02 Score=27.34 Aligned_cols=77 Identities=17% Similarity=0.081 Sum_probs=51.3
Q ss_pred eeHHHHHHHHHHHH---HHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEE
Q 006197 77 KTYKEVYEEVLQIV---SALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153 (657)
Q Consensus 77 ~Ty~el~~~v~~lA---~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii 153 (657)
+++.+......... +.+...++++|++|+|+..-+.=..++++|....|+..+.++.. .+. ..++...++..++
T Consensus 137 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~r-~~~~~~~Ga~~~i 213 (348)
T 4eez_A 137 LDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QDK-LNLAKKIGADVTI 213 (348)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HHH-HHHHHHTTCSEEE
T ss_pred CCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HHH-hhhhhhcCCeEEE
Confidence 66766544433322 23455689999999999887777777777777777776666543 333 4567778888776
Q ss_pred Ecc
Q 006197 154 VQD 156 (657)
Q Consensus 154 ~~~ 156 (657)
-..
T Consensus 214 ~~~ 216 (348)
T 4eez_A 214 NSG 216 (348)
T ss_dssp EC-
T ss_pred eCC
Confidence 543
No 84
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=27.63 E-value=2.4e+02 Score=27.03 Aligned_cols=64 Identities=11% Similarity=0.118 Sum_probs=43.6
Q ss_pred HHHcC-CCCCCEEEEEeCCchhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcch
Q 006197 93 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (657)
Q Consensus 93 L~~~G-~~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 157 (657)
+.+.| +++|+.|.. ...+=.-..+.++|...|..++.+-|......-...++..+++++++...
T Consensus 58 a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 58 AEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp HHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCC
Confidence 34455 467776555 44455555667777899998777655544455567788999999998863
No 85
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=26.61 E-value=2.6e+02 Score=26.75 Aligned_cols=64 Identities=11% Similarity=0.029 Sum_probs=43.4
Q ss_pred HHHcC-CCCCCEEEEEeCCchhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcch
Q 006197 93 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (657)
Q Consensus 93 L~~~G-~~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 157 (657)
+.+.| +++|+.|.. ...+=.-..+.++|...|..++.+-|......-...++..+++++++...
T Consensus 56 a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 56 AEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGA 120 (308)
T ss_dssp HHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 34445 466765544 55555556677778889998777655544445566789999999998864
No 86
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=25.14 E-value=1.7e+02 Score=28.47 Aligned_cols=60 Identities=7% Similarity=0.020 Sum_probs=35.6
Q ss_pred CCCCCCEEEEEeCCch------hHHHHHHH-HHhcCCEEEeccCCC------------ChhHHHHHHhccCceEEEEcc
Q 006197 97 GAEPGCRVGIYGANCP------QWVEAMEA-CNALSLICVPLYDTL------------GPGAVNFILDHAEIDFVFVQD 156 (657)
Q Consensus 97 G~~~gd~V~i~~~n~~------e~~~~~lA-~~~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~ii~~~ 156 (657)
.+++||+|+|++|.+. +.+-.... +-..|..++.-.... .++++..++.+-.+++|++..
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 5899999999999852 22222222 334577665432111 223566667777777777654
No 87
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=23.68 E-value=3.1e+02 Score=26.38 Aligned_cols=64 Identities=16% Similarity=0.060 Sum_probs=44.4
Q ss_pred HHcC-CCCCCEEEEEeCCchhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcch
Q 006197 94 RASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (657)
Q Consensus 94 ~~~G-~~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 157 (657)
.+.| +++|....+....+=.-..+.++|.+.|..++.+-|......-...++..+++++++..+
T Consensus 58 ~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 58 EKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 4555 566754444455565666777888899998777655544455667888999999998764
No 88
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=23.17 E-value=2e+02 Score=28.17 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=36.4
Q ss_pred CCCCCCEEEEEeCCch------hHHHHHHH-HHhcCCEEEeccCCC------------ChhHHHHHHhccCceEEEEcch
Q 006197 97 GAEPGCRVGIYGANCP------QWVEAMEA-CNALSLICVPLYDTL------------GPGAVNFILDHAEIDFVFVQDK 157 (657)
Q Consensus 97 G~~~gd~V~i~~~n~~------e~~~~~lA-~~~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~ii~~~~ 157 (657)
.+++||+|+|++|.+. +-+-.... +-..|..++.-.... .++++..++.+-++++|++...
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 88 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIG 88 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 5899999999999883 22222232 234677766432111 2235666666667777776653
No 89
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=22.83 E-value=2.6e+02 Score=27.28 Aligned_cols=63 Identities=10% Similarity=0.069 Sum_probs=42.4
Q ss_pred HHcC-CCCCCEEEEEeCCchhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcch
Q 006197 94 RASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (657)
Q Consensus 94 ~~~G-~~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 157 (657)
.+.| +++|+.|...+. +=.-..+.++|...|..++.+-|......-...++..+++++++...
T Consensus 70 ~~~g~~~~g~~vv~aSs-GN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 70 IKDGRLKPGMEIIESTS-GNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGK 133 (343)
T ss_dssp HHHTSSCTTCEEEEECS-SHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 3345 467776555543 44555566777789987776655544455667888999999998763
No 90
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=21.55 E-value=3.7e+02 Score=25.56 Aligned_cols=63 Identities=8% Similarity=-0.044 Sum_probs=43.6
Q ss_pred HHHcC-CCCCCEEEEEeCCchhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcc
Q 006197 93 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (657)
Q Consensus 93 L~~~G-~~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 156 (657)
+.+.| +++|+.|...+ .+=.-..+.+++.+.|..++.+-|......-...++..+++++++..
T Consensus 52 a~~~g~~~~g~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 115 (303)
T 2v03_A 52 AEKRGEIKPGDVLIEAT-SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTK 115 (303)
T ss_dssp HHHTTCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred HHHcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECC
Confidence 33445 46777665554 34455566777789999877766655445566788999999999986
No 91
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=21.53 E-value=2.2e+02 Score=28.39 Aligned_cols=62 Identities=11% Similarity=0.047 Sum_probs=37.2
Q ss_pred cCCCCCCEEEEEeCCch------hHHHHHHH-HHhcCCEEEeccCCC------------ChhHHHHHHhccCceEEEEcc
Q 006197 96 SGAEPGCRVGIYGANCP------QWVEAMEA-CNALSLICVPLYDTL------------GPGAVNFILDHAEIDFVFVQD 156 (657)
Q Consensus 96 ~G~~~gd~V~i~~~n~~------e~~~~~lA-~~~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~ii~~~ 156 (657)
.-+++||+|+|++|.+. +-+-.... +-..|..++.-+... .+++|..++.+-++++|++..
T Consensus 38 ~~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 38 APLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 36899999999999874 22222232 234687766442211 223566666666777777755
Q ss_pred h
Q 006197 157 K 157 (657)
Q Consensus 157 ~ 157 (657)
.
T Consensus 118 G 118 (371)
T 3tla_A 118 G 118 (371)
T ss_dssp C
T ss_pred c
Confidence 3
No 92
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=21.47 E-value=3.6e+02 Score=25.58 Aligned_cols=64 Identities=8% Similarity=0.024 Sum_probs=42.4
Q ss_pred HHHcC-CCCCC--EEEEEeCCchhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcch
Q 006197 93 LRASG-AEPGC--RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (657)
Q Consensus 93 L~~~G-~~~gd--~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 157 (657)
+.+.| +++|+ .|.. ...+=.-..+.++|...|..++.+-|......-...++..+++++++...
T Consensus 51 a~~~g~~~~g~~~~vv~-assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 51 AEERGILRPGSGQVIVE-PTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPE 117 (304)
T ss_dssp HHHTTSCCTTSCCEEEE-SCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTT
T ss_pred HHHcCCCCCCCccEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 34445 56676 4433 34444555667778899998777655544455667888999999998865
No 93
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=20.53 E-value=2.2e+02 Score=27.71 Aligned_cols=61 Identities=5% Similarity=0.007 Sum_probs=36.4
Q ss_pred CCCCCCEEEEEeCCchh------HHHHHHHH-HhcCCEEEeccCCC------------ChhHHHHHHhccCceEEEEcch
Q 006197 97 GAEPGCRVGIYGANCPQ------WVEAMEAC-NALSLICVPLYDTL------------GPGAVNFILDHAEIDFVFVQDK 157 (657)
Q Consensus 97 G~~~gd~V~i~~~n~~e------~~~~~lA~-~~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~ii~~~~ 157 (657)
-+++||+|+|++|.+.- -+-..... -..|..++.-+... .++++..++.+-++++|++...
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLG 87 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 58999999999998741 22222322 34677766432111 2235666666667777776553
No 94
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=20.29 E-value=3.1e+02 Score=28.71 Aligned_cols=62 Identities=11% Similarity=0.111 Sum_probs=45.1
Q ss_pred HHcC-CCCCCEEEEEeCCchhHHHHHHHHHhcCCEEEeccCCCChhHHHHHHhccCceEEEEcc
Q 006197 94 RASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (657)
Q Consensus 94 ~~~G-~~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 156 (657)
.+.| +++|+.|.. ...+=.-..+.++|...|..++.+-|......-...++..++.++++..
T Consensus 105 ~~~g~~~~g~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~ 167 (527)
T 3pc3_A 105 EEQGLLKPGYTIIE-PTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPT 167 (527)
T ss_dssp HHHTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred HHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCC
Confidence 3445 578887655 4445556667778888899887776665556667888999999999875
No 95
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=20.06 E-value=71 Score=30.20 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=21.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEEeCCc
Q 006197 87 LQIVSALRASGAEPGCRVGIYGANC 111 (657)
Q Consensus 87 ~~lA~~L~~~G~~~gd~V~i~~~n~ 111 (657)
..+.+.|+++|+++||.|++.+.-+
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl~ 42 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSLS 42 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECTG
T ss_pred HHHHHHHHHcCCCCCCEEEEEechH
Confidence 4567789999999999999998754
No 96
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=20.02 E-value=2.1e+02 Score=20.83 Aligned_cols=46 Identities=20% Similarity=0.146 Sum_probs=34.5
Q ss_pred eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCE
Q 006197 75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127 (657)
Q Consensus 75 ~~~Ty~el~~~v~~lA~~L~~~G~~~gd~V~i~~~n~~e~~~~~lA~~~~G~~ 127 (657)
..+.+.++.+ .+.+.+..+++.|.+++..+.....+...+...|..
T Consensus 22 ~~ip~~~l~~-------~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~ 67 (85)
T 2jtq_A 22 INIPLKEVKE-------RIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYT 67 (85)
T ss_dssp EECCHHHHHH-------HHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCS
T ss_pred EEcCHHHHHH-------HHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCC
Confidence 5667777654 344456788899999999988888888888888863
Done!