Query 006198
Match_columns 657
No_of_seqs 374 out of 1166
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 19:48:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006198.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006198hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03191 Type I inositol-1,4,5 100.0 5E-159 1E-163 1308.3 45.3 609 1-633 1-621 (621)
2 KOG0566 Inositol-1,4,5-triphos 100.0 2.2E-91 4.7E-96 786.8 24.9 323 78-618 514-843 (1080)
3 smart00128 IPPc Inositol polyp 100.0 5E-77 1.1E-81 624.8 27.4 225 377-612 80-310 (310)
4 COG5411 Phosphatidylinositol 5 100.0 6.4E-66 1.4E-70 549.2 19.0 321 78-615 7-335 (460)
5 PTZ00312 inositol-1,4,5-tripho 100.0 5.9E-31 1.3E-35 270.3 10.1 175 420-604 65-356 (356)
6 KOG0565 Inositol polyphosphate 100.0 3.1E-29 6.6E-34 235.9 12.4 142 378-520 2-145 (145)
7 KOG1976 Inositol polyphosphate 99.7 2.9E-18 6.2E-23 177.3 5.6 166 420-606 154-388 (391)
8 TIGR03395 sphingomy sphingomye 98.3 1.8E-05 3.9E-10 83.2 14.8 148 418-603 116-282 (283)
9 PRK05421 hypothetical protein; 98.2 1.8E-05 3.9E-10 81.9 12.8 127 423-607 135-262 (263)
10 PF03372 Exo_endo_phos: Endonu 98.2 8.4E-07 1.8E-11 85.1 2.7 98 388-501 72-173 (249)
11 PRK11756 exonuclease III; Prov 96.9 0.0047 1E-07 63.6 9.2 64 423-496 89-155 (268)
12 TIGR00633 xth exodeoxyribonucl 96.8 0.011 2.3E-07 59.6 11.2 35 107-145 1-36 (255)
13 COG3568 ElsH Metal-dependent h 96.8 0.0098 2.1E-07 62.4 11.0 61 423-500 119-187 (259)
14 PTZ00297 pantothenate kinase; 95.7 0.081 1.7E-06 67.2 12.9 69 421-495 131-206 (1452)
15 PRK13911 exodeoxyribonuclease 95.1 0.12 2.7E-06 53.7 9.8 35 108-145 2-36 (250)
16 COG3021 Uncharacterized protei 93.6 0.31 6.6E-06 52.6 8.9 60 421-495 173-233 (309)
17 PRK13911 exodeoxyribonuclease 92.8 0.043 9.3E-07 57.0 1.0 54 426-495 90-147 (250)
18 PLN03144 Carbon catabolite rep 91.5 0.79 1.7E-05 53.7 9.3 62 436-512 418-480 (606)
19 TIGR00195 exoDNase_III exodeox 90.3 0.63 1.4E-05 47.5 6.4 34 108-145 2-35 (254)
20 KOG3873 Sphingomyelinase famil 89.8 3 6.5E-05 46.2 11.1 198 382-608 73-294 (422)
21 PF14529 Exo_endo_phos_2: Endo 88.6 0.16 3.4E-06 45.0 0.5 33 569-601 86-119 (119)
22 COG0708 XthA Exonuclease III [ 87.6 0.096 2.1E-06 55.3 -1.8 34 108-145 2-35 (261)
23 KOG2756 Predicted Mg2+-depende 86.3 2 4.3E-05 45.9 7.0 61 428-498 197-257 (349)
24 PRK11756 exonuclease III; Prov 78.8 0.51 1.1E-05 48.6 -0.7 34 108-145 2-35 (268)
25 KOG2338 Transcriptional effect 74.0 4.4 9.5E-05 46.4 4.9 92 393-494 205-302 (495)
26 TIGR00633 xth exodeoxyribonucl 70.1 1.7 3.6E-05 43.8 0.5 54 435-498 100-155 (255)
27 smart00476 DNaseIc deoxyribonu 69.5 7.6 0.00016 41.4 5.2 47 436-498 143-190 (276)
28 TIGR00195 exoDNase_III exodeox 68.3 1.7 3.6E-05 44.4 0.0 53 436-498 98-152 (254)
29 PRK15251 cytolethal distending 62.6 5.9 0.00013 42.3 2.8 54 422-494 141-194 (271)
30 PRK05421 hypothetical protein; 53.1 7.4 0.00016 40.5 1.6 36 106-145 43-78 (263)
31 PRK15251 cytolethal distending 42.3 47 0.001 35.7 5.5 38 107-149 25-69 (271)
32 TIGR02616 tnaC_leader tryptoph 26.5 15 0.00032 26.1 -0.8 16 17-32 6-21 (26)
33 PF08053 Tna_leader: Tryptopha 24.7 15 0.00032 25.0 -1.0 14 17-30 8-21 (24)
34 KOG3870 Uncharacterized conser 22.4 35 0.00076 38.5 0.6 15 482-496 350-364 (434)
35 PRK09806 tryptophanase leader 21.3 18 0.00039 25.0 -1.1 15 17-31 8-22 (26)
No 1
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=100.00 E-value=4.7e-159 Score=1308.26 Aligned_cols=609 Identities=76% Similarity=1.200 Sum_probs=559.0
Q ss_pred CCcccCcCccccChHHHHHhhhccCCCCccccCCccCCCCCcccccccccccccccccccccccccccCcccccccCCC-
Q 006198 1 MRTQRGKRSEAFWPSIVMKKWLNIKPKVYDFSEDEIDTETESEDDACSVKDARVHIREDHLHKAQENHSDCQSQISETP- 79 (657)
Q Consensus 1 m~~~~~k~~~~~W~~~v~~Kwlni~~~~~df~aD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (657)
||++++|++|+||||+||||||||++|++||||||+|+++++|+++|+.++.+..++++++.+.++++..++.++++.|
T Consensus 1 m~~~~~k~~~~~w~~~v~rkwlni~~k~~df~ad~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (621)
T PLN03191 1 MRTRRGKRPEAFWPSIVMKKWLNIKPKVYDFSEDEYDTETESEDDACSVKDVRVNVDEDHANRRQGNQSVFGNQISDGGV 80 (621)
T ss_pred CCccccCccccccHHHHHHHHhCcCCcccccCcccccCCCccccchhhhhcccccccccccccccccccccccccccCcc
Confidence 9999999999999999999999999999999999999988899999999999999999999999999999888877655
Q ss_pred --CchhhHhhhcccccccccccceeeeEEEEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeeeeeCCCCCccccC
Q 006198 80 --SKGYHLRHRRGKSETLRVQYINTKDVRVTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEVVPLNAGNVLGAE 157 (657)
Q Consensus 80 --~~~~~~~~rr~~~e~~r~~y~~~~~irifvgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEiV~Lna~nvl~~e 157 (657)
++.|..++|||++||+|+|||+++++|||||||||||+.|+.+++|.+||.+++|+|||||||||||||||||||+++
T Consensus 81 ~~~~~~~~~~rr~~~e~~ra~y~~~~~~rv~v~TWNV~g~~p~~~l~l~~wl~~~~p~DiyviG~QE~v~lna~nv~~~~ 160 (621)
T PLN03191 81 SVSKGYSSKHRRGKSETLRAQYINTKDIRVTIGTWNVAGRLPSEDLEIEDWLSTEEPADIYIIGFQEVVPLNAGNVLGAE 160 (621)
T ss_pred ccccccchhhhccchhhhHHHhccccceEEEEEEeecCCCCCcccCCHHHhccCCCCCCEEEEeeEEeccCcHhhhhccc
Confidence 678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHhcCCCCCcccccccCCCCCCCcCCCchhhhhhhhhhcccCCCccCcccccccccccCCCCCcccc
Q 006198 158 SSRPIPKWEAIIRRTLNKSAEPENKYKSYSAPPSPVLRTSSVADELADELADEIDDLPLGITSEEYASITNGCNVGREDL 237 (657)
Q Consensus 158 d~~~~~~W~~~I~~~Ln~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (657)
++.|+++|+.+|+++||+..++.++|+|||+||||++ .+|+ ++|||+.|+|+.....++.+.-.....+
T Consensus 161 ~~~~~~~W~~~i~~tl~~~~~~~~~~k~~S~ppsp~~-~~~~---~~~e~~~~~d~~~~~~~~~~~~~~~~~~------- 229 (621)
T PLN03191 161 DSRPIPKWEAIIRRTLNKSNKPESKHKSYSAPPSPVL-RTSI---VADELAEEVDSLPLEMMNNEFIDAATGC------- 229 (621)
T ss_pred cCCchhhHHHHHHHHHhccCCCCCccccCCCCCCccc-CCcc---hhhhhhhhcccChhhhcccccccccccc-------
Confidence 9999999999999999999999999999999999999 4444 6788999988855533332210000000
Q ss_pred hhhhccccccccccccccccCCCCCCCCCCCCCCchhhhhhhhhhhhccccccccccccCCCCCCCcccccccCCCcccc
Q 006198 238 KKVISIGKNLHLSRIYGVDYDRRLDWPEHSFDATPQVISSNLKLRRVFSSSARIGFTLVDNPPMLSPQHFAINGNGLKRS 317 (657)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~ 317 (657)
-....+.+.+++|++.+++..++.+.+|++|+|+||+|+||||+|||+|++|++|+++.++.+++++
T Consensus 230 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~s~~~r~~~~~~e~p~~~~~~~~~~~~~~~~~~ 296 (621)
T PLN03191 230 -------------PSLEPERNKNIGWPEHSLDATPQVVSSNSKLRRVFSSSARLGFKWPENPSLFSPQRFALNARGLKRS 296 (621)
T ss_pred -------------cccchhhccccCCcccccccCcccccccccceeeeccccccccCCCCCccccCchhhcccccccchh
Confidence 0122456667789998888888878899999999999999999999999999999999999999999
Q ss_pred ccccCccccchhhccCCc------ccccccccCCCCCCcccccccCCCcccccchHHHHhhccCCCCEEEEEeeeceeEE
Q 006198 318 HHSYGNLVSTWMEQQEEP------EVVESVSDVSDGFSDEEFDAFSETPKEKHNDAAIRDTAKSRPKYVRIVSKQMVGIY 391 (657)
Q Consensus 318 ~~s~~~~~s~~~~~~~~~------~~~~s~~~~~~~~s~~e~~~~~~~~~~~~~~~~~~~~~~~~~~Yv~v~S~qMVGi~ 391 (657)
++||++++++|.++++.. ...+|.+...+.+++++++.+++++..|.++..+........+|++|.|+|||||+
T Consensus 297 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YvkV~S~qLvGl~ 376 (621)
T PLN03191 297 HRSFGNLGLSWNEIKQRSEVPEVPEVIDSLSDVSDRSSEAEDDTFKEVPSYQLPEDLIKDCRKVKQKYVRIVSKQMVGIY 376 (621)
T ss_pred hhccccccccccchhhcccccccccccccccccccccCCCcccccccCChhhhhhHHHHhhccCCCCEEEEEEEeeeeEE
Confidence 999999999999765543 33445555666667788889999999888888888888899999999999999999
Q ss_pred EEEEEeccccccccceeEeEEeecccccccCceEEEEEEEEcCeEEEeeccccCCCCCChhHHHHHhhHHHHHhhcCcCC
Q 006198 392 VSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSS 471 (657)
Q Consensus 392 L~VfVr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~Ts~cFVn~HLaAgek~~~~~rRN~D~~eIlrr~~F~~ 471 (657)
|+||||++++++|++|++++|+||+||++||||||+|+|.|++|+|||||||||||++++++++||+|+.+|++++.|..
T Consensus 377 L~VFvk~~l~~~Is~V~~s~V~tGl~G~~GNKGAVaIr~~l~~Ts~cFVn~HLAAg~~~~~~~rRN~D~~~I~~~l~F~~ 456 (621)
T PLN03191 377 VSVWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSISMSLFQSRLCFVCSHLTSGHKDGAEQRRNADVYEIIRRTRFSS 456 (621)
T ss_pred EEEEEehhhhhhcccceeeeEeeccccccccceeEEEEEEEcCcEEEEEEeccccccccchHHHHHHHHHHHHhccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999899999999999999999987
Q ss_pred CCCCCCCCCCCCcceEEEeCccccccccChHHHHHHHhccchhhhhhchhchHHHhcCCcccCccccCcccCCCCCcccC
Q 006198 472 VFDTDQPQTIPSHDQIFWFGDLNYRLNMMDTEVRELVAQKRWDKLINSDQLSKELHSGHVFEGWKEGVINFPPTYKYEIN 551 (657)
Q Consensus 472 ~~~~~~p~~I~dhD~Vfw~GDLNYRI~l~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~ 551 (657)
..+...|..|.+||+|||||||||||++++++|+++|.+++|+.||++|||++|+++|++|.||+||+|+|||||||++|
T Consensus 457 ~~~~~~~~~I~dhD~vFWlGDLNYRIdl~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~GF~Eg~I~FpPTYKYd~g 536 (621)
T PLN03191 457 VLDTDQPQTIPSHDQIFWFGDLNYRLNMLDTEVRKLVAQKRWDELINSDQLIKELRSGHVFDGWKEGPIKFPPTYKYEIN 536 (621)
T ss_pred ccccCCCccccccceEEEecCccccccCCHHHHHHHHhhccHHHHHHHhHHHHHHHcCCccCCcccCCccCCCCcccccC
Confidence 66666788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCCCCcccCCCcccceeeecCCeeEEeeccCCCcCCCCcCceeEEEEEEEeeChHhHhhhccccccc---cc
Q 006198 552 SDRYVGENPKEGEKKRSPAWCDRILWLGKGIKQLAYTRAEILLSDHRPVSSTFLVQVEVLDHRKLKRALNVSSAV---VH 628 (657)
Q Consensus 552 Sd~Y~~~~~k~~~KkR~PSWCDRIL~~g~~i~~l~Y~s~e~~~SDHrPV~A~F~v~v~vi~~~klq~~l~~~~~~---v~ 628 (657)
++.|+++++++++|+|+|||||||||++++++++.|.+.++++||||||+|.|.|+|++++++|+|+++++++|+ ||
T Consensus 537 Sd~Ydg~~~~Ts~KkR~PSWCDRILykg~~i~~l~Y~s~ei~~SDHRPV~A~F~v~V~~id~~k~q~~~~~~~a~~~~~~ 616 (621)
T PLN03191 537 SDRYVGENPKEGEKKRSPAWCDRILWLGKGIKQLCYKRSEIRLSDHRPVSSMFLVEVEVFDHRKLQRALNVNSAAASAVH 616 (621)
T ss_pred CccccccccccccCccccchhheEeecCCCceEeEeccCCcccCCchhcceEEEEEEEecCHHHHHhhhhcchhhhhccC
Confidence 999998888899999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred CCccc
Q 006198 629 PDIFL 633 (657)
Q Consensus 629 ~~~~~ 633 (657)
||.++
T Consensus 617 ~~~~~ 621 (621)
T PLN03191 617 PEPSF 621 (621)
T ss_pred CccCC
Confidence 99764
No 2
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-91 Score=786.81 Aligned_cols=323 Identities=42% Similarity=0.775 Sum_probs=300.5
Q ss_pred CCCchhhH-hhhcccccccccccceeeeEEEEEeeeeCCCCCCCCCCCcccccCCC------CCCCEEEEeeeeeeeCCC
Q 006198 78 TPSKGYHL-RHRRGKSETLRVQYINTKDVRVTIGTWNVAGRQPYEDLDIDDWLCTQ------EPADIYIFGFQEVVPLNA 150 (657)
Q Consensus 78 ~~~~~~~~-~~rr~~~e~~r~~y~~~~~irifvgTwNV~G~~p~~~ldl~~WL~~~------~~~DIYvlGfQEiV~Lna 150 (657)
+|++.|+. +|+.+.+ +|+..++||||||||||||+.+....||++||++. .++|||||||||||+|||
T Consensus 514 dpv~~yv~~~L~er~~-----eyt~~k~i~IfvgTfNvNG~s~~~k~~L~~WLfp~s~~~~~~~aDIyviG~eEvVeLna 588 (1080)
T KOG0566|consen 514 DPVHEYVLKELRERRS-----EYTEPKDISIFVGTFNVNGRSAAFKDDLSDWLFPISRGKEFSPADIYVIGFEEVVELNA 588 (1080)
T ss_pred CchhHHHHHHHHHhhh-----hhccccceEEEEEeeeccCccccchhhHHhhccccccCCcCCcCcEEEEeehhhhhcCc
Confidence 78888887 7787755 49999999999999999997776667899999974 379999999999999999
Q ss_pred CCccccCCCCChhHHHHHHHHHhcCCCCCcccccccCCCCCCCcCCCchhhhhhhhhhcccCCCccCcccccccccccCC
Q 006198 151 GNVLGAESSRPIPKWEAIIRRTLNKSAEPENKYKSYSAPPSPVLRTSSVADELADELADEIDDLPLGITSEEYASITNGC 230 (657)
Q Consensus 151 ~nvl~~ed~~~~~~W~~~I~~~Ln~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~e~d~~~~~~~~~~~~~~~~~~ 230 (657)
|||+.++.. ....|++.|+++||+.
T Consensus 589 g~iv~As~t-k~~~Wee~i~~~Ln~~------------------------------------------------------ 613 (1080)
T KOG0566|consen 589 GNIVSASTT-KRRFWEEKILKTLNRY------------------------------------------------------ 613 (1080)
T ss_pred cceeccChH-HHHHHHHHHHHHhcCC------------------------------------------------------
Confidence 999987665 4899999999998752
Q ss_pred CCCcccchhhhccccccccccccccccCCCCCCCCCCCCCCchhhhhhhhhhhhccccccccccccCCCCCCCccccccc
Q 006198 231 NVGREDLKKVISIGKNLHLSRIYGVDYDRRLDWPEHSFDATPQVISSNLKLRRVFSSSARIGFTLVDNPPMLSPQHFAIN 310 (657)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~r~~~~~~~~p~~~~~~~~~~~ 310 (657)
T Consensus 614 -------------------------------------------------------------------------------- 613 (1080)
T KOG0566|consen 614 -------------------------------------------------------------------------------- 613 (1080)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccCccccchhhccCCcccccccccCCCCCCcccccccCCCcccccchHHHHhhccCCCCEEEEEeeeceeE
Q 006198 311 GNGLKRSHHSYGNLVSTWMEQQEEPEVVESVSDVSDGFSDEEFDAFSETPKEKHNDAAIRDTAKSRPKYVRIVSKQMVGI 390 (657)
Q Consensus 311 ~~~~~~~~~s~~~~~s~~~~~~~~~~~~~s~~~~~~~~s~~e~~~~~~~~~~~~~~~~~~~~~~~~~~Yv~v~S~qMVGi 390 (657)
..+|+++.|.||||+
T Consensus 614 -----------------------------------------------------------------~~kYvlL~s~QlvGv 628 (1080)
T KOG0566|consen 614 -----------------------------------------------------------------KNKYVLLRSEQLVGV 628 (1080)
T ss_pred -----------------------------------------------------------------CCceEEEehhhhhee
Confidence 015999999999999
Q ss_pred EEEEEEeccccccccceeEeEEeecccccccCceEEEEEEEEcCeEEEeeccccCCCCCChhHHHHHhhHHHHHhhcCcC
Q 006198 391 YVSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFS 470 (657)
Q Consensus 391 ~L~VfVr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~Ts~cFVn~HLaAgek~~~~~rRN~D~~eIlrr~~F~ 470 (657)
+|.+|+|.+..++|++|..++++||++|..||||||+|||.++.|+|||||+|||||+.+ ..+||.||.+|.++++|+
T Consensus 629 ~L~iF~r~~~~p~Ik~V~~~tkKTGfGG~tgNKGAVAIrf~~~~TsfCFv~SHlAAG~sn--v~ERn~DY~tI~r~l~Fp 706 (1080)
T KOG0566|consen 629 CLLLFIRPDHAPYIKDVAGDTKKTGFGGATGNKGAVAIRFVYHATSFCFVCSHLAAGQSN--VEERNEDYKTIARKLRFP 706 (1080)
T ss_pred eEEEEEcccccchhhhcccceeecccccccCCCceEEEEEEeccccEEEEecccccccch--HhhhhhhHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999999999999999975 788999999999999997
Q ss_pred CCCCCCCCCCCCCcceEEEeCccccccccChHHHHHHHhccchhhhhhchhchHHHhcCCcccCccccCcccCCCCCccc
Q 006198 471 SVFDTDQPQTIPSHDQIFWFGDLNYRLNMMDTEVRELVAQKRWDKLINSDQLSKELHSGHVFEGWKEGVINFPPTYKYEI 550 (657)
Q Consensus 471 ~~~~~~~p~~I~dhD~Vfw~GDLNYRI~l~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~ 550 (657)
. ...|.+||+|||||||||||++++++|+.+|.+++|+.|+++|||++||.+|.+|.||.|++|+|+||||||.
T Consensus 707 ~------Gr~I~~HD~ifW~GDFNYRI~l~nEEVr~~v~~~d~~kL~e~DQL~~q~~~G~vF~gF~E~~ltF~PTYKyD~ 780 (1080)
T KOG0566|consen 707 R------GRMIFSHDYIFWLGDFNYRIDLSNEEVRRLVRNQDLDKLLEYDQLTQQMNAGQVFPGFHEGQLTFPPTYKYDP 780 (1080)
T ss_pred C------CccccCCceEEEecccceeecCCHHHHHHHHHhccHHHHhhHHHHHHHHhcCcccccccccccccCCcccccC
Confidence 5 4579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCCCCCCcccCCCcccceeeecCCeeEEeeccCCCcCCCCcCceeEEEEEEEeeChHhHhh
Q 006198 551 NSDRYVGENPKEGEKKRSPAWCDRILWLGKGIKQLAYTRAEILLSDHRPVSSTFLVQVEVLDHRKLKR 618 (657)
Q Consensus 551 ~Sd~Y~~~~~k~~~KkR~PSWCDRIL~~g~~i~~l~Y~s~e~~~SDHrPV~A~F~v~v~vi~~~klq~ 618 (657)
+|+.||+ ++|+|+|||||||||++..+.++.|.+.++++||||||+|+|.++|..+|.+|..+
T Consensus 781 gTd~YDT-----SeK~R~PAWTDRIL~r~e~~~~l~Y~~~el~~SDHRPV~A~~~a~i~~Vd~~kk~~ 843 (1080)
T KOG0566|consen 781 GTDDYDT-----SEKCRTPAWTDRILWRGEKLELLSYKRAELKTSDHRPVYAIFRAEIFEVDEQKKLR 843 (1080)
T ss_pred CCCcccc-----chhccCccchhhheeccccccccccccccccccCCCceEEEEEEEEEEEcHHHHHH
Confidence 9999995 89999999999999999999999999999999999999999999999999776544
No 3
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=100.00 E-value=5e-77 Score=624.79 Aligned_cols=225 Identities=40% Similarity=0.742 Sum_probs=207.0
Q ss_pred CCEEEEEeeeceeEEEEEEEeccccccccceeEeEEeecccccccCceEEEEEEEEcCeEEEeeccccCCCCCChhHHHH
Q 006198 377 PKYVRIVSKQMVGIYVSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRR 456 (657)
Q Consensus 377 ~~Yv~v~S~qMVGi~L~VfVr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~Ts~cFVn~HLaAgek~~~~~rR 456 (657)
..|+++.+.+|+||+|+||+|.++.++|+++.+++|++|++|.+||||||+|+|.+.+++||||||||+||+++ .++|
T Consensus 80 ~~Y~~v~~~~l~gi~l~vf~~~~~~~~i~~v~~~~v~~G~~~~~~nKG~v~i~~~~~~~~~~fv~~HL~a~~~~--~~~R 157 (310)
T smart00128 80 GQYNVLAKVRLVGILVLVFVKANHLVYIKDVETFTVKTGMGGLWGNKGAVAVRFKLSDTSFCFVNSHLAAGASN--VEQR 157 (310)
T ss_pred CceEEEeeeeecceEEEEEEehhhcCccceeEeeeeeccccceeecCceEEEEEEEcCcEEEEEeeccccccch--hhhh
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999864 7899
Q ss_pred HhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCccccccccCh-HHHHHHHhccchhhhhhchhchHHHhcCCcccCc
Q 006198 457 NSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLNMMD-TEVRELVAQKRWDKLINSDQLSKELHSGHVFEGW 535 (657)
Q Consensus 457 N~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~l~~-~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf 535 (657)
|+|+.+|++++.|+.... ..+.+||+|||||||||||++.+ ++++++|++++|+.||++|||+.+++++.+|.||
T Consensus 158 ~~~~~~I~~~~~f~~~~~----~~~~~~d~~f~~GDlNyRi~~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~~f 233 (310)
T smart00128 158 NQDYKTILRALSFPERAE----LSQFDHDVVFWFGDLNFRLDSPSYEEVRRKISKKEFDDLLEKDQLNRQKEAGKVFKGF 233 (310)
T ss_pred HHHHHHHHHhcCCCCCcc----ccccccceEEEecCcceeecCCCHHHHHHHHhhCcHHHHhhhhhHHHHhhcccccCcC
Confidence 999999999998864211 12678999999999999999988 8999999999999999999999999999999999
Q ss_pred cccCcccCCCCCcc-cCCccCCCCCCCCCCcccCCCcccceeeec--CCeeEEe-ecc-CCCcCCCCcCceeEEEEEEEe
Q 006198 536 KEGVINFPPTYKYE-INSDRYVGENPKEGEKKRSPAWCDRILWLG--KGIKQLA-YTR-AEILLSDHRPVSSTFLVQVEV 610 (657)
Q Consensus 536 ~Eg~I~FpPTYKy~-~~Sd~Y~~~~~k~~~KkR~PSWCDRIL~~g--~~i~~l~-Y~s-~e~~~SDHrPV~A~F~v~v~v 610 (657)
.|++|+|||||||+ .+++.|++ ++|+|+|||||||||+. .++.++. |.+ .++.+||||||+|.|.|.+..
T Consensus 234 ~E~~I~F~PTYK~~~~~t~~Yd~-----~~k~R~PsWcDRIL~~~~~~~~~~~~~Y~s~~~~~~SDHkPV~~~f~v~~~~ 308 (310)
T smart00128 234 QEGPITFPPTYKYDSVGTETYDT-----SEKKRVPAWCDRILYRSNGPNLIQLSEYHSGMELTTSDHKPVFATFRLKVTA 308 (310)
T ss_pred ccCCcCCCCCeeecCCCCccccC-----cccccCcchhheehhhccCCCceecccccCCCccCCcCcccccEEEEEEEEe
Confidence 99999999999999 99999985 67899999999999994 4566665 876 589999999999999999987
Q ss_pred eC
Q 006198 611 LD 612 (657)
Q Consensus 611 i~ 612 (657)
++
T Consensus 309 ~~ 310 (310)
T smart00128 309 VD 310 (310)
T ss_pred cC
Confidence 64
No 4
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=6.4e-66 Score=549.19 Aligned_cols=321 Identities=36% Similarity=0.630 Sum_probs=287.1
Q ss_pred CCCchhhH-hhhcccccccccccceeeeEEEEEeeeeCCCCCCCCCCCcccccCCC----CCCCEEEEeeeeeeeCCCCC
Q 006198 78 TPSKGYHL-RHRRGKSETLRVQYINTKDVRVTIGTWNVAGRQPYEDLDIDDWLCTQ----EPADIYIFGFQEVVPLNAGN 152 (657)
Q Consensus 78 ~~~~~~~~-~~rr~~~e~~r~~y~~~~~irifvgTwNV~G~~p~~~ldl~~WL~~~----~~~DIYvlGfQEiV~Lna~n 152 (657)
+|++.|+. .++.+++ +|+--+++.||++|+|++|..| ..++..||++. +.+|+||+||||+|+|++|.
T Consensus 7 ~p~~~y~~~~l~~~~s-----k~~~~~~~~~f~~~~n~~~~~~--k~~~k~~lfP~~~~~~~~dlyVvGlQEvv~lt~~s 79 (460)
T COG5411 7 DPRHPYIVAVLRQRRS-----KYVIEKDVSIFVSTFNPPGKPP--KASTKRWLFPEIEATELADLYVVGLQEVVELTPGS 79 (460)
T ss_pred CCCchhHHHHHHHHhh-----hheeecceeeEeccccCCCCCc--hhhhhhhcccccccccccceEEeccceeeeccchh
Confidence 68888887 6677655 4999999999999999999766 44589999982 36899999999999999999
Q ss_pred ccccCCCCChhHHHHHHHHHhcCCCCCcccccccCCCCCCCcCCCchhhhhhhhhhcccCCCccCcccccccccccCCCC
Q 006198 153 VLGAESSRPIPKWEAIIRRTLNKSAEPENKYKSYSAPPSPVLRTSSVADELADELADEIDDLPLGITSEEYASITNGCNV 232 (657)
Q Consensus 153 vl~~ed~~~~~~W~~~I~~~Ln~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~e~d~~~~~~~~~~~~~~~~~~~~ 232 (657)
|++++.......|++.+..+||. .
T Consensus 80 ils~~p~~rl~~wes~~~~~Ln~-~------------------------------------------------------- 103 (460)
T COG5411 80 ILSADPYDRLRIWESKVLDCLNG-A------------------------------------------------------- 103 (460)
T ss_pred hccCCcccccchhHHHHHHHhcc-c-------------------------------------------------------
Confidence 99776433346777766666653 1
Q ss_pred CcccchhhhccccccccccccccccCCCCCCCCCCCCCCchhhhhhhhhhhhccccccccccccCCCCCCCcccccccCC
Q 006198 233 GREDLKKVISIGKNLHLSRIYGVDYDRRLDWPEHSFDATPQVISSNLKLRRVFSSSARIGFTLVDNPPMLSPQHFAINGN 312 (657)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~r~~~~~~~~p~~~~~~~~~~~~~ 312 (657)
T Consensus 104 -------------------------------------------------------------------------------- 103 (460)
T COG5411 104 -------------------------------------------------------------------------------- 103 (460)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccCccccchhhccCCcccccccccCCCCCCcccccccCCCcccccchHHHHhhccCCCCEEEEEeeeceeEEE
Q 006198 313 GLKRSHHSYGNLVSTWMEQQEEPEVVESVSDVSDGFSDEEFDAFSETPKEKHNDAAIRDTAKSRPKYVRIVSKQMVGIYV 392 (657)
Q Consensus 313 ~~~~~~~s~~~~~s~~~~~~~~~~~~~s~~~~~~~~s~~e~~~~~~~~~~~~~~~~~~~~~~~~~~Yv~v~S~qMVGi~L 392 (657)
...++|.++.+.||.|++|
T Consensus 104 -------------------------------------------------------------~~~eky~~l~s~q~~~~~~ 122 (460)
T COG5411 104 -------------------------------------------------------------QSDEKYSLLRSPQLGGILL 122 (460)
T ss_pred -------------------------------------------------------------ccCCceEEecchhccCcce
Confidence 0123688899999999999
Q ss_pred EEEEeccccccccceeEeEEeecccccccCceEEEEEEEEcCeEEEeeccccCCCCCChhHHHHHhhHHHHHhhcCcCCC
Q 006198 393 SIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSV 472 (657)
Q Consensus 393 ~VfVr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~Ts~cFVn~HLaAgek~~~~~rRN~D~~eIlrr~~F~~~ 472 (657)
.||.+.+-.+.+.+|..+.-+||++|..+|||+|+++|.+..+.||||+|||+||..+ .++|+.||..|.+.++|..
T Consensus 123 ~vf~~~~~~~v~~~V~~~~~KtG~gg~s~nKGav~i~~~~~~t~~cFv~shlaag~~N--~eeR~~Dy~~I~~~i~f~~- 199 (460)
T COG5411 123 RVFSLATNLPVVKPVSGTVKKTGFGGSSSNKGAVAIRFNYERTSFCFVNSHLAAGVNN--IEERIFDYRSIASNICFSR- 199 (460)
T ss_pred EEeeeccccceeccccccccccccceecccccccceeEEeecCCcEEEecchhccccc--HHHHHHHHHHHHHheecCC-
Confidence 9999999999999999999999999999999999999999999999999999999865 7889999999999999964
Q ss_pred CCCCCCCCCCCcceEEEeCccccccccChHHHHHHHhccc--hhhhhhchhchHHHhcCCcccCccccCcccCCCCCccc
Q 006198 473 FDTDQPQTIPSHDQIFWFGDLNYRLNMMDTEVRELVAQKR--WDKLINSDQLSKELHSGHVFEGWKEGVINFPPTYKYEI 550 (657)
Q Consensus 473 ~~~~~p~~I~dhD~Vfw~GDLNYRI~l~~~ev~~lI~~~~--~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~ 550 (657)
...|++||+|||+|||||||++.+++++..+...+ +..|+++|||..|+..|.+|.||+|..|+|||||||+.
T Consensus 200 -----g~~I~~hdti~w~GDlNyRVts~~e~v~~~~~~~~g~~~~l~~~DqL~~e~~~g~~f~~f~E~~i~FpPTYKfd~ 274 (460)
T COG5411 200 -----GLRIYDHDTIFWLGDLNYRVTSTNEEVRPEIASDDGRLDKLFEYDQLLWEMEVGNVFPGFKEPVITFPPTYKFDY 274 (460)
T ss_pred -----CceecccceEEEecccCceeecCchhcchhhhCCcchhhhhhhhhhHhhhhcccccccceecccccCCCceEeec
Confidence 34689999999999999999999999999998877 88899999999999999999999999999999999999
Q ss_pred CCccCCCCCCCCCCcccCCCcccceeeecCCeeEEeeccCC-CcCCCCcCceeEEEEEEEeeChHh
Q 006198 551 NSDRYVGENPKEGEKKRSPAWCDRILWLGKGIKQLAYTRAE-ILLSDHRPVSSTFLVQVEVLDHRK 615 (657)
Q Consensus 551 ~Sd~Y~~~~~k~~~KkR~PSWCDRIL~~g~~i~~l~Y~s~e-~~~SDHrPV~A~F~v~v~vi~~~k 615 (657)
+++.|+. ++|.|+||||||||+++....+++|.+.. +++||||||+|+|.+.+.++|+.+
T Consensus 275 gt~~ydt-----sdk~RiPsWtDRIl~~s~~~~p~sY~sip~l~~SDHrPV~a~~~~~i~~~d~~~ 335 (460)
T COG5411 275 GTDEYDT-----SDKGRIPSWTDRILYKSEQLTPHSYSSIPHLMISDHRPVYATFRAKIKVVDPSK 335 (460)
T ss_pred CCccccc-----cccccCCchhhhhhhhccccccccccccCceeecCCCeEEEEEecceEEeCcch
Confidence 9999985 78999999999999999999999999976 999999999999999999999765
No 5
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=99.97 E-value=5.9e-31 Score=270.27 Aligned_cols=175 Identities=26% Similarity=0.418 Sum_probs=131.1
Q ss_pred ccCceEEEEEEEEcCeEEEeeccccCCCCCChh---------HHHHHhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEe
Q 006198 420 MGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGA---------EQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWF 490 (657)
Q Consensus 420 lGNKGaVsVs~~l~~Ts~cFVn~HLaAgek~~~---------~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~ 490 (657)
.+.||.+.+|++|+++.|||||+||.++..+.. ...|..++..||.+.. . .+..++++|||
T Consensus 65 wSRKGfmrtrw~i~~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~--~--------~~~~~~~lF~f 134 (356)
T PTZ00312 65 RSRKGFLLLSLRLGTVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECS--A--------FISPSDPLFIF 134 (356)
T ss_pred ccccceEEEEEEECCEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHh--h--------ccCCCCcEEEe
Confidence 678999999999999999999999999987754 2457888888987522 1 23457999999
Q ss_pred CccccccccChH--HHH------HHHh------ccchhhhhhchhchHHHhc-------------CCcccCccccCcccC
Q 006198 491 GDLNYRLNMMDT--EVR------ELVA------QKRWDKLINSDQLSKELHS-------------GHVFEGWKEGVINFP 543 (657)
Q Consensus 491 GDLNYRI~l~~~--ev~------~lI~------~~~~~~LL~~DQL~~e~~~-------------g~vF~gf~Eg~I~Fp 543 (657)
||||||++...- -++ ..++ ...|.+||++|||..|++. .+.|.++.|.+|+||
T Consensus 135 GDfNyRld~~~~~e~L~ek~Ql~ve~~~g~~~~P~hf~~Lf~~dQl~rE~~~fd~e~q~l~~~va~~s~~eLaE~pI~Fp 214 (356)
T PTZ00312 135 GDFNVRLDGHNLLEWLKEKMQIDVKIEVKRVRAPDRFWELFTNPQTQGEIRRFDLELQRLMDVVAQQSGVELAEFAIRFP 214 (356)
T ss_pred ccceeeeccccHHHHhcccccccccccccccCChHHHHHHhcChhhhHHHhhhhhhhhhhhhhhhhhcccchhcccccCC
Confidence 999999995431 111 0111 3468899999999999985 667889999999999
Q ss_pred CCCCcccC----------------CccCCCCC------------------------------------C-CCCCcccCCC
Q 006198 544 PTYKYEIN----------------SDRYVGEN------------------------------------P-KEGEKKRSPA 570 (657)
Q Consensus 544 PTYKy~~~----------------Sd~Y~~~~------------------------------------~-k~~~KkR~PS 570 (657)
||||-... ...|...+ | ....+.|+||
T Consensus 215 PTYkrva~r~~~~~~~~~a~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~g~~d~i~~~~~l~~~ta~P~r~~~~~r~pa 294 (356)
T PTZ00312 215 PTYPRVAERTNTGAQIESAGANVAASVYGVKDVAAKLDNQQRKKAAKDLKGTADAILASVVLTRVTAIPHRNYCRDRLPA 294 (356)
T ss_pred CcchhhhhhcCCcchhhhcccccccchhcccccccccccccccchhhhccCccceeeeeeeeecccccCCcchhcccchh
Confidence 99993221 01111000 1 1235899999
Q ss_pred cccceeeecCC----------------------------eeEEeeccCCCcCCCCcCceeEE
Q 006198 571 WCDRILWLGKG----------------------------IKQLAYTRAEILLSDHRPVSSTF 604 (657)
Q Consensus 571 WCDRIL~~g~~----------------------------i~~l~Y~s~e~~~SDHrPV~A~F 604 (657)
|||||||...| ..+..|.+.++..+||.+|...|
T Consensus 295 wcdrvl~~~~~~~~~~~~r~~~a~~~~~aa~~~~~~~~~~~~~~Y~s~~L~htDH~~V~~lF 356 (356)
T PTZ00312 295 WCDRVLWNPAGLELMTGDRSRSASPQSAAASKGDQASGQSCRYAYRSIDLIHTDHDGVFLLF 356 (356)
T ss_pred hhheeeechhhhhhhcCccccCCCcchhhhccCCcccchhhhheeeeeeeeeccCccceecC
Confidence 99999998432 23467899999999999998876
No 6
>KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.1e-29 Score=235.95 Aligned_cols=142 Identities=45% Similarity=0.722 Sum_probs=129.6
Q ss_pred CEEEEEeeeceeEEEEEEEeccccccccceeEeEEeecccccccCceEEEEEEEEcCeEEEeeccccCCCCCChhHHHHH
Q 006198 378 KYVRIVSKQMVGIYVSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRN 457 (657)
Q Consensus 378 ~Yv~v~S~qMVGi~L~VfVr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~Ts~cFVn~HLaAgek~~~~~rRN 457 (657)
.|+++.++||+|+++.+|++.++..++.+++++++++|+||++||||+|+++|.++++.+|||||||+||.++.+ ++||
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~g~~~~~~nkg~v~is~~~~~~~~~~v~~hl~~~~~~~~-~~r~ 80 (145)
T KOG0565|consen 2 LYVVVASGRLVGIDLSVLLRRDLLDHSFNVRVSEVGTGIMGYLGNKGGVAISFVLSQTSFCFVISHLTSGVHKVY-ERRN 80 (145)
T ss_pred cEEEEeeeEEEEEEEEEEehhhhhhhhcccEEEEecceEEEEeCCCCeEEEEEEEcCceEEEEEecccccchhhH-HHhh
Confidence 699999999999999999999999999999999999999999999999999999999999999999999988753 3399
Q ss_pred hhHHHHHhhcCcCCCCCCCCCCCCCC-cceEEEeCccccccccC-hHHHHHHHhccchhhhhhch
Q 006198 458 SDVSEIRRRTRFSSVFDTDQPQTIPS-HDQIFWFGDLNYRLNMM-DTEVRELVAQKRWDKLINSD 520 (657)
Q Consensus 458 ~D~~eIlrr~~F~~~~~~~~p~~I~d-hD~Vfw~GDLNYRI~l~-~~ev~~lI~~~~~~~LL~~D 520 (657)
+|+.+|+.++.|........|..+.. ||.|||+||||||+..+ +.+++.++..+.|+.|+++|
T Consensus 81 ~d~~~i~~~~~~~~~~~~~~~~~~~~~~D~v~w~GDlN~Rl~~~~~~~~~~~~~~~~~~~l~~~d 145 (145)
T KOG0565|consen 81 EDYQEILNGLRFPSVSPASEPVISDGEHDTVIWLGDLNYRLSGPSYLEVRTLISVKSRDGLLEKD 145 (145)
T ss_pred ccHHHHHhhccccccCcccccccccccccEEEEecceeeeecCcccccchhhhhhcchhhhhccC
Confidence 99999999999986555555655554 89999999999999988 88899999999999998876
No 7
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=99.72 E-value=2.9e-18 Score=177.35 Aligned_cols=166 Identities=31% Similarity=0.450 Sum_probs=107.8
Q ss_pred ccCceEEEEEEEEcCeEEEeeccccCCCCCCh---------hHHHHHhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEe
Q 006198 420 MGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDG---------AEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWF 490 (657)
Q Consensus 420 lGNKGaVsVs~~l~~Ts~cFVn~HLaAgek~~---------~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~ 490 (657)
++.||-.-.++.|++..|.|||.||-....+- ....|.+.+.-+|.++.= .-...+.+|+|
T Consensus 154 ~~rkg~~~~r~~I~~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~----------~~~~~~~~fVf 223 (391)
T KOG1976|consen 154 NQRKGFLLARFRIHGKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDE----------EGLRNDAIFVF 223 (391)
T ss_pred hhhccccceeEEEcCceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHHh----------hccCceEEEEe
Confidence 46789999999999999999999996554321 123455555555554321 11235789999
Q ss_pred CccccccccCh-----------HHH--------HHH---------------Hhccchh-------------hhhhchhch
Q 006198 491 GDLNYRLNMMD-----------TEV--------REL---------------VAQKRWD-------------KLINSDQLS 523 (657)
Q Consensus 491 GDLNYRI~l~~-----------~ev--------~~l---------------I~~~~~~-------------~LL~~DQL~ 523 (657)
||||||++... ..+ .++ |+++.|+ .++.+|
T Consensus 224 GdfNfrLds~s~ln~l~a~q~~qtv~~~d~~~vv~~ifr~esd~drkv~l~vEkk~FDyfnh~~f~d~~r~~~~~~d--- 300 (391)
T KOG1976|consen 224 GDFNFRLDSTSLLNYLAATQLVQTVAKKDEDGVVESIFRVESDGDRKVTLTVEKKRFDYFNHDWFFDLGRGMVKRYD--- 300 (391)
T ss_pred cccccccchHHHHHHHhcCCccchhhhcccCcceeeEEeecccCCceeEEEeehhhcchhhhHHHHHcCchhhhhcc---
Confidence 99999998432 011 111 1122222 233333
Q ss_pred HHHhcCCcccC-ccccCcccCCCCCcccCCccCCCCCCCCCCcccCCCcccceeeecCC----------eeEEeecc--C
Q 006198 524 KELHSGHVFEG-WKEGVINFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGKG----------IKQLAYTR--A 590 (657)
Q Consensus 524 ~e~~~g~vF~g-f~Eg~I~FpPTYKy~~~Sd~Y~~~~~k~~~KkR~PSWCDRIL~~g~~----------i~~l~Y~s--~ 590 (657)
+|+. .|+. ..|..|.|||||.|..+... ...-.+.|+||||||||+.... -+.+.|.. +
T Consensus 301 kEl~---nf~~kl~E~~i~FpPsypysed~~~-----~E~~m~TrcPAWcDRILmn~~a~eLv~~~e~e~~~~~Y~~vg~ 372 (391)
T KOG1976|consen 301 KELA---NFAFKLKEETIFFPPSYPYSEDDSG-----KEEFMRTRCPAWCDRILMNDRANELVKHDEFEASGLYYGLVGE 372 (391)
T ss_pred hHHH---HHHHHHhheeecCCCCCCCCcCccc-----hHHHHhccChHhhhhhhcCccHHHHhhccccCcccceeccccc
Confidence 2222 3443 88999999999999764321 0112479999999999997532 23467887 5
Q ss_pred CCcCCCCcCceeEEEE
Q 006198 591 EILLSDHRPVSSTFLV 606 (657)
Q Consensus 591 e~~~SDHrPV~A~F~v 606 (657)
+..+.|||||...|.+
T Consensus 373 e~c~GdHKpVfl~~~i 388 (391)
T KOG1976|consen 373 EKCVGDHKPVFLHASI 388 (391)
T ss_pred ccccCCCcceEEEEee
Confidence 7899999999998875
No 8
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=98.25 E-value=1.8e-05 Score=83.17 Aligned_cols=148 Identities=19% Similarity=0.247 Sum_probs=88.3
Q ss_pred ccccCceEEEEEEEEcCeEEEeeccccCCCCC----ChhHHHHHhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCcc
Q 006198 418 GYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQK----DGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDL 493 (657)
Q Consensus 418 G~lGNKGaVsVs~~l~~Ts~cFVn~HLaAgek----~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDL 493 (657)
....+||.+.+++.+.+..+.|+|+||.+... ......|..++.+|.+.+.- ..+...+.||++|||
T Consensus 116 d~~~~kg~l~a~i~~~g~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~---------~~~~~~~pvIl~GDf 186 (283)
T TIGR03395 116 DNLSNKGFAYVKINKNGKKFHVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFIDS---------KNIPKDETVLIGGDL 186 (283)
T ss_pred ccccCCceEEEEEecCCeEEEEEEeCCCCCcccccccccHHHHHHHHHHHHHHHhh---------ccCCCCceEEEEeeC
Confidence 34578999999999999999999999987531 12246789999999774321 112234679999999
Q ss_pred ccccccChHHHHHHHhccchhhhhhchhchHHHhcCCcccCccccCcccCCCCCcccCCccCCCCCCCCCCcccCCCccc
Q 006198 494 NYRLNMMDTEVRELVAQKRWDKLINSDQLSKELHSGHVFEGWKEGVINFPPTYKYEINSDRYVGENPKEGEKKRSPAWCD 573 (657)
Q Consensus 494 NYRI~l~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~Sd~Y~~~~~k~~~KkR~PSWCD 573 (657)
|-.-+. .+.+.+ ...+.... .+|. .|.|-|+...+.|..... .+=.|.+-|
T Consensus 187 N~~~~s--~~~~~m---------------l~~l~~~~--p~~~------g~~~T~d~~~N~~a~~~~----~~~~~~~lD 237 (283)
T TIGR03395 187 NVNKGS--NEYHDM---------------FKTLNVSE--PRYV------GVPATWDATTNSIAKYYY----PKEEPEYLD 237 (283)
T ss_pred CCCCCC--HHHHHH---------------HHHhcccC--CCcC------CCCCCcCCCcCchhhhhc----CCCCcceEE
Confidence 976432 222222 11111110 1111 245555665555543111 122367899
Q ss_pred ceeeecCCe----------eEEee----cc-CCCcCCCCcCceeE
Q 006198 574 RILWLGKGI----------KQLAY----TR-AEILLSDHRPVSST 603 (657)
Q Consensus 574 RIL~~g~~i----------~~l~Y----~s-~e~~~SDHrPV~A~ 603 (657)
+||+++... ...+. .. .-..+|||-||+|.
T Consensus 238 yvl~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~sdh~~v~~~ 282 (283)
T TIGR03395 238 YIFVSKSHAQPPVWQNKVLDPKSVTSWFKKYTYDDFSDHYPVYGF 282 (283)
T ss_pred EEEEECCCCCCccccceEEeccccccccccccccccccccceeee
Confidence 999996421 12221 11 23578999999875
No 9
>PRK05421 hypothetical protein; Provisional
Probab=98.18 E-value=1.8e-05 Score=81.90 Aligned_cols=127 Identities=17% Similarity=0.241 Sum_probs=74.5
Q ss_pred ceEEEEEEEE-cCeEEEeeccccCCCCCChhHHHHHhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCccccccccCh
Q 006198 423 KGSVSVSMTL-FQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLNMMD 501 (657)
Q Consensus 423 KGaVsVs~~l-~~Ts~cFVn~HLaAgek~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~l~~ 501 (657)
||++.+.+.+ .+..|.++|+||.+.... ...|..++..|.+.+. . . ...+|++||||-.-....
T Consensus 135 r~~l~a~~~~~~g~~l~v~ntHl~~~~~~--~~~r~~q~~~l~~~~~--~---~--------~~p~Il~GDFN~~~~~~~ 199 (263)
T PRK05421 135 KSALITEYPLPNGRTLLVVNIHAINFSLG--VDVYSKQLEPIGDQIA--H---H--------SGPVILAGDFNTWSRKRM 199 (263)
T ss_pred ceeEEEEEEeCCCCEEEEEEECccccCcC--hHHHHHHHHHHHHHHH--h---C--------CCCEEEEcccccCcccch
Confidence 7888888888 556799999999865322 3457778877766431 0 0 136999999994111111
Q ss_pred HHHHHHHhccchhhhhhchhchHHHhcCCcccCccccCcccCCCCCcccCCccCCCCCCCCCCcccCCCcccceeeecCC
Q 006198 502 TEVRELVAQKRWDKLINSDQLSKELHSGHVFEGWKEGVINFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGKG 581 (657)
Q Consensus 502 ~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~Sd~Y~~~~~k~~~KkR~PSWCDRIL~~g~~ 581 (657)
...+.+. ... |+. ..+|++.-.+ ..+ + .|. |+||.. +
T Consensus 200 ~~l~~~~---------------~~~-------~l~--~~~~~~~~~~----~~~-~--------~~I----D~I~~~--~ 236 (263)
T PRK05421 200 NALKRFA---------------REL-------GLK--EVRFTDDQRR----RAF-G--------RPL----DFVFYR--G 236 (263)
T ss_pred HHHHHHH---------------HHc-------CCC--ccCcCCcccc----ccc-C--------CCc----ceEEEC--C
Confidence 1111111 100 111 1134433211 001 0 233 999974 6
Q ss_pred eeEEeeccCCCcCCCCcCceeEEEEE
Q 006198 582 IKQLAYTRAEILLSDHRPVSSTFLVQ 607 (657)
Q Consensus 582 i~~l~Y~s~e~~~SDHrPV~A~F~v~ 607 (657)
+....+.-.....|||+||.|.|.+.
T Consensus 237 ~~v~~~~v~~~~~SDH~Pv~a~l~l~ 262 (263)
T PRK05421 237 LNVSKASVLVTRASDHNPLLVEFSLK 262 (263)
T ss_pred cEEEEEEcCCCCCCCccCEEEEEEec
Confidence 77677766677899999999999763
No 10
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=98.18 E-value=8.4e-07 Score=85.07 Aligned_cols=98 Identities=24% Similarity=0.321 Sum_probs=53.5
Q ss_pred eeEEEEEEEeccccccccceeEeEEeeccc---ccccCceEEEEEEEEcCeEEEeeccccCCCCCChhHHHHHhhHHHHH
Q 006198 388 VGIYVSIWVRKRLRRHINNLKVSPVGVGLM---GYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIR 464 (657)
Q Consensus 388 VGi~L~VfVr~~l~~~I~~v~vs~VgtGi~---G~lGNKGaVsVs~~l~~Ts~cFVn~HLaAgek~~~~~rRN~D~~eIl 464 (657)
.+..++|++|..+...+........+.+.. ....+++.+.+++. +..|+++|+|+.+... .|..+..+++
T Consensus 72 ~~~g~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~~~H~~~~~~-----~~~~~~~~~~ 144 (249)
T PF03372_consen 72 GGYGVAILSRSPIFSSVSYVFSLFSKPGIRIFRRSSKSKGIVPVSIN--GKPITVVNVHLPSSND-----ERQEQWRELL 144 (249)
T ss_dssp SSEEEEEEESSCCCEEEEEEEEEESSSTTCEEEEEEEEEEEEEEEEE--TEEEEEEEEETTSHHH-----HHHHHHHHHH
T ss_pred cCceEEEEEcccccccccccccccccccccccccccccccccccccc--ceEEEeeeccccccch-----hhhhhhhhhh
Confidence 455677888887655444333333233322 22455666677766 9999999999998532 2232222333
Q ss_pred hhcC-cCCCCCCCCCCCCCCcceEEEeCccccccccCh
Q 006198 465 RRTR-FSSVFDTDQPQTIPSHDQIFWFGDLNYRLNMMD 501 (657)
Q Consensus 465 rr~~-F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~l~~ 501 (657)
..+. +.. ..+ ...+|++||||.+.....
T Consensus 145 ~~~~~~~~----~~~-----~~~~iv~GDfN~~~~~~~ 173 (249)
T PF03372_consen 145 ARIQKIYA----DNP-----NEPVIVMGDFNSRPDSRD 173 (249)
T ss_dssp HHHHHHHH----TSS-----CCEEEEEEE-SS-BSSGG
T ss_pred hhhhhccc----ccc-----cceEEEEeecccCCccch
Confidence 2221 100 000 116999999999987543
No 11
>PRK11756 exonuclease III; Provisional
Probab=96.86 E-value=0.0047 Score=63.59 Aligned_cols=64 Identities=8% Similarity=0.195 Sum_probs=36.8
Q ss_pred ceEEEEEEEEcCeEEEeeccccCCCCCC---hhHHHHHhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCccccc
Q 006198 423 KGSVSVSMTLFQSRLCLVCSHLTSGQKD---GAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYR 496 (657)
Q Consensus 423 KGaVsVs~~l~~Ts~cFVn~HLaAgek~---~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYR 496 (657)
.+.+.+.+...+..|.|+|+|++.+... .....|..-+..|...+.- . ......+|++||||--
T Consensus 89 ~r~l~~~i~~~~g~~~v~n~y~P~~~~~~~~~~~~~r~~~~~~l~~~l~~--~--------~~~~~pvIl~GDfN~~ 155 (268)
T PRK11756 89 RRIIMATIPTPNGNLTVINGYFPQGESRDHPTKFPAKRQFYQDLQNYLET--E--------LSPDNPLLIMGDMNIS 155 (268)
T ss_pred CCEEEEEEEcCCCCEEEEEEEecCCCCCCcchhHHHHHHHHHHHHHHHHH--H--------hccCCCEEEEeecccC
Confidence 4677777777655699999999887532 1222333333333322210 0 0112469999999954
No 12
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.81 E-value=0.011 Score=59.59 Aligned_cols=35 Identities=31% Similarity=0.579 Sum_probs=23.5
Q ss_pred EEEeeeeCCCCCCCCCCCc-ccccCCCCCCCEEEEeeeee
Q 006198 107 VTIGTWNVAGRQPYEDLDI-DDWLCTQEPADIYIFGFQEV 145 (657)
Q Consensus 107 ifvgTwNV~G~~p~~~ldl-~~WL~~~~~~DIYvlGfQEi 145 (657)
+.|.||||+|..... ..+ .+||... .||| |+|||+
T Consensus 1 lri~t~Nv~g~~~~~-~~~~~~~l~~~-~~DI--v~LQE~ 36 (255)
T TIGR00633 1 MKIISWNVNGLRARL-HKLFLDWLKEE-QPDV--LCLQET 36 (255)
T ss_pred CEEEEEecccHHHHh-hccHHHHHHhc-CCCE--EEEEec
Confidence 358899999954322 234 7777554 4587 678998
No 13
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=96.79 E-value=0.0098 Score=62.44 Aligned_cols=61 Identities=21% Similarity=0.359 Sum_probs=44.6
Q ss_pred ceEEEEEEEEc-CeEEEeeccccCCCCCChhHHHHHhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCccc-------
Q 006198 423 KGSVSVSMTLF-QSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLN------- 494 (657)
Q Consensus 423 KGaVsVs~~l~-~Ts~cFVn~HLaAgek~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLN------- 494 (657)
.|++-+.+... +..|-+||+||.=. .+.|-++...|+..+.+. +-..+++|||||
T Consensus 119 Rgal~a~~~~~~g~~l~V~~~HL~l~-----~~~R~~Q~~~L~~~~~l~------------~~~p~vl~GDFN~~p~s~~ 181 (259)
T COG3568 119 RGALLAEIELPGGKPLRVINAHLGLS-----EESRLRQAAALLALAGLP------------ALNPTVLMGDFNNEPGSAE 181 (259)
T ss_pred ceeEEEEEEcCCCCEEEEEEEecccc-----HHHHHHHHHHHHhhccCc------------ccCceEEEccCCCCCCCcc
Confidence 68888888874 66899999999954 356888888888733321 112799999999
Q ss_pred cccccC
Q 006198 495 YRLNMM 500 (657)
Q Consensus 495 YRI~l~ 500 (657)
||+...
T Consensus 182 yr~~~~ 187 (259)
T COG3568 182 YRLAAR 187 (259)
T ss_pred ceeccC
Confidence 666543
No 14
>PTZ00297 pantothenate kinase; Provisional
Probab=95.74 E-value=0.081 Score=67.24 Aligned_cols=69 Identities=19% Similarity=0.266 Sum_probs=40.9
Q ss_pred cCceEEEEEEEEc----C-eEEEeeccccCCCCCChhHHHHHhhHHHHHhhcC--cCCCCCCCCCCCCCCcceEEEeCcc
Q 006198 421 GNKGSVSVSMTLF----Q-SRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTR--FSSVFDTDQPQTIPSHDQIFWFGDL 493 (657)
Q Consensus 421 GNKGaVsVs~~l~----~-Ts~cFVn~HLaAgek~~~~~rRN~D~~eIlrr~~--F~~~~~~~~p~~I~dhD~Vfw~GDL 493 (657)
.+||.+-+.+.+. + ..+-|+|+||.+.... ..|.+++.+|.+-+. .....+ ...+.....+|+.|||
T Consensus 131 ~~RG~L~a~I~vp~~~g~~~~v~v~~tHL~~~~~~---~~R~~Q~~ql~~~i~~~i~~~~~---~~~~~~~~PvILaGDF 204 (1452)
T PTZ00297 131 VRRGCLFAEVEVPLAEGGSQRIVFFNVHLRQEDSL---PSTSSQVQETRRFVESVIANVYE---QNNDGAEIPFVIAGDF 204 (1452)
T ss_pred cccceEEEEEEccccCCCCceEEEEEeCCCCCCCc---chHHHHHHHHHHHHHHhhhhhcc---cccCCCCCCEEEEeeC
Confidence 4788888888874 2 4799999999987543 124444555543211 100000 0122234579999999
Q ss_pred cc
Q 006198 494 NY 495 (657)
Q Consensus 494 NY 495 (657)
|=
T Consensus 205 N~ 206 (1452)
T PTZ00297 205 NI 206 (1452)
T ss_pred CC
Confidence 93
No 15
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=95.14 E-value=0.12 Score=53.68 Aligned_cols=35 Identities=29% Similarity=0.473 Sum_probs=26.0
Q ss_pred EEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006198 108 TIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (657)
Q Consensus 108 fvgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (657)
.+.||||||..-.....+.+||.. ..||| |+|||+
T Consensus 2 ki~swNVNgir~~~~~~~~~~l~~-~~~DI--iclQEt 36 (250)
T PRK13911 2 KLISWNVNGLRACMTKGFMDFFNS-VDADV--FCIQES 36 (250)
T ss_pred EEEEEEeCChhHhhhhhHHHHHHh-cCCCE--EEEEee
Confidence 578999999654333358899965 44687 789999
No 16
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.63 E-value=0.31 Score=52.59 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=38.3
Q ss_pred cCceEEEEEEEE-cCeEEEeeccccCCCCCChhHHHHHhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCcccc
Q 006198 421 GNKGSVSVSMTL-FQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNY 495 (657)
Q Consensus 421 GNKGaVsVs~~l-~~Ts~cFVn~HLaAgek~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNY 495 (657)
+-||++.+.... +++.+..+|.|..-..-.. ...| +...++.+.+. . .. .-||+.||||=
T Consensus 173 ~pk~~~~t~~~~~~g~~l~v~~lh~~~~~~~~-~~~~-~ql~~l~~~i~--~---~~--------gpvIlaGDfNa 233 (309)
T COG3021 173 LPKSALATAYPLPDGTELTVVALHAVNFPVGT-DPQR-AQLLELGDQIA--G---HS--------GPVILAGDFNA 233 (309)
T ss_pred CCccceeEEEEcCCCCEEEEEeeccccccCCc-cHHH-HHHHHHHHHHH--c---CC--------CCeEEeecCCC
Confidence 468877777664 5789999999988433222 2344 55666655422 0 11 25999999995
No 17
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=92.78 E-value=0.043 Score=57.03 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=30.9
Q ss_pred EEEEEEEcCeEEEeeccccCCCCCCh-hHHHH---HhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCcccc
Q 006198 426 VSVSMTLFQSRLCLVCSHLTSGQKDG-AEQRR---NSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNY 495 (657)
Q Consensus 426 VsVs~~l~~Ts~cFVn~HLaAgek~~-~~~rR---N~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNY 495 (657)
-.|...+. .|.+||+..+.+.... ....| ..++.+.+..+. ....+||+||||=
T Consensus 90 R~I~~~~~--~~~l~nvY~Pn~~~~~~r~~~K~~~~~~~~~~l~~l~--------------~~~~~Ii~GD~Nv 147 (250)
T PRK13911 90 RVITCEFE--SFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALE--------------LKKPVIVCGDLNV 147 (250)
T ss_pred CEEEEEEC--CEEEEEEEecCCCCCCcchHHHHHHHHHHHHHHHhcc--------------cCCCEEEEccccC
Confidence 33444443 5899999999986431 12222 233444443321 1247999999994
No 18
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=91.51 E-value=0.79 Score=53.73 Aligned_cols=62 Identities=16% Similarity=0.254 Sum_probs=40.5
Q ss_pred EEEeeccccCCCCCChhHHHHHhhHHHHHhhcC-cCCCCCCCCCCCCCCcceEEEeCccccccccChHHHHHHHhccc
Q 006198 436 RLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTR-FSSVFDTDQPQTIPSHDQIFWFGDLNYRLNMMDTEVRELVAQKR 512 (657)
Q Consensus 436 s~cFVn~HLaAgek~~~~~rRN~D~~eIlrr~~-F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~l~~~ev~~lI~~~~ 512 (657)
.||++|+||-.+.... .-|..+...|++.+. |.. .. .-.||++||||- .+...+-+++.++.
T Consensus 418 ~l~VaNTHL~~~p~~~--dvRl~Q~~~Ll~~l~~~~~------~~----~~PvIlcGDFNS---~P~S~vy~lLt~G~ 480 (606)
T PLN03144 418 LLCVANTHIHANQELK--DVKLWQVHTLLKGLEKIAA------SA----DIPMLVCGDFNS---VPGSAPHCLLATGK 480 (606)
T ss_pred EEEEEEeeeccCCccc--hhHHHHHHHHHHHHHHHhh------cC----CCceEEeccCCC---CCCChhhhhhhcCC
Confidence 5999999997765433 346666677766532 110 01 125999999995 55667777887764
No 19
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=90.34 E-value=0.63 Score=47.53 Aligned_cols=34 Identities=29% Similarity=0.450 Sum_probs=23.3
Q ss_pred EEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006198 108 TIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (657)
Q Consensus 108 fvgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (657)
.|.||||+|..... ..+..||... .||| |+|||+
T Consensus 2 ri~t~Ni~g~~~~~-~~~~~~l~~~-~~DI--i~LQE~ 35 (254)
T TIGR00195 2 KIISWNVNGLRARL-HKGLAWLKEN-QPDV--LCLQET 35 (254)
T ss_pred EEEEEEcCcHHHhH-HHHHHHHHhc-CCCE--EEEEec
Confidence 58999999954322 2367888554 4687 558996
No 20
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=89.76 E-value=3 Score=46.17 Aligned_cols=198 Identities=20% Similarity=0.187 Sum_probs=106.1
Q ss_pred EEeeeceeEEEEEEEeccccccccce-----eEeEEeecccccccCceEEEEEEEEcCeEEEeeccccCCC---CCChhH
Q 006198 382 IVSKQMVGIYVSIWVRKRLRRHINNL-----KVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSG---QKDGAE 453 (657)
Q Consensus 382 v~S~qMVGi~L~VfVr~~l~~~I~~v-----~vs~VgtGi~G~lGNKGaVsVs~~l~~Ts~cFVn~HLaAg---ek~~~~ 453 (657)
..|.-| |--|+||.|--+..-..+. .-..+-. +.+.|-||--..++.+.+..+.+-|+||-|- +++...
T Consensus 73 FHSGim-GaGL~vfSK~PI~~t~~~~y~lNG~p~~i~r--GDWf~GK~Vgl~~l~~~g~~v~~yntHLHAeY~rq~D~YL 149 (422)
T KOG3873|consen 73 FHSGIM-GAGLCVFSKHPILETLFHRYSLNGYPHAIHR--GDWFGGKGVGLTVLLVGGRMVNLYNTHLHAEYDRQNDEYL 149 (422)
T ss_pred hhcccc-cCceEEeecCchhhhhhhccccCCccceeee--ccccccceeEEEEEeeCCEEeeeeehhccccccccCchhh
Confidence 356666 8889999887654322211 1111222 2556789887888888999999999999885 222334
Q ss_pred HHHHhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCccccccc-cChHHHH--HHHhccchhhhhhchhchHHHhcCC
Q 006198 454 QRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLN-MMDTEVR--ELVAQKRWDKLINSDQLSKELHSGH 530 (657)
Q Consensus 454 ~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~-l~~~ev~--~lI~~~~~~~LL~~DQL~~e~~~g~ 530 (657)
-.|-++.-++-+-++- +-...|.||..||||-+=. ++..-.. .|+ ..|..|. -||.-..--++.
T Consensus 150 ~HR~~QAwdlaqfi~~----------t~q~~~vVI~~GDLN~~P~dl~~~ll~~a~l~--daw~~~h-~~q~e~~~~r~s 216 (422)
T KOG3873|consen 150 CHRVAQAWDLAQFIRA----------TRQNADVVILAGDLNMQPQDLGHKLLLSAGLV--DAWTSLH-LDQCESDSFRLS 216 (422)
T ss_pred hHHHHHHHHHHHHHHH----------HhcCCcEEEEecCCCCCccccceeeeeccchh--hhHhhhc-hhhhcCcccccc
Confidence 5566666555442211 1124689999999997653 3332111 122 2333332 233222111222
Q ss_pred cccCccccCcccCCCCCcccCCccCCCCCCCCCCcccCCC--c--ccceeeecCC--eeEEeec----c---CCCcCCCC
Q 006198 531 VFEGWKEGVINFPPTYKYEINSDRYVGENPKEGEKKRSPA--W--CDRILWLGKG--IKQLAYT----R---AEILLSDH 597 (657)
Q Consensus 531 vF~gf~Eg~I~FpPTYKy~~~Sd~Y~~~~~k~~~KkR~PS--W--CDRIL~~g~~--i~~l~Y~----s---~e~~~SDH 597 (657)
-|++.-||.-+=-| -+.|.. ..+|.|- = -|-||+++.. ++.-.|. + .+..+|||
T Consensus 217 ~~~~l~~g~tcd~~-------~N~y~~------aqk~~ddp~~~RiDYvl~k~~~~~~~~a~~~~t~~rvP~~d~s~SDH 283 (422)
T KOG3873|consen 217 EDKELVEGNTCDSP-------LNCYTS------AQKREDDPLGKRIDYVLVKPGDCNAKIAEVEFTEPRVPGEDCSYSDH 283 (422)
T ss_pred hhhhhhcCCcccCc-------chhhhH------HHhCCCCccceeeeEEEEcCcceEEEeeeEEecCCCCCCCCCCccch
Confidence 24445555411111 122321 1111111 1 4888998753 2222332 2 24678999
Q ss_pred cCceeEEEEEE
Q 006198 598 RPVSSTFLVQV 608 (657)
Q Consensus 598 rPV~A~F~v~v 608 (657)
-.+.|++.+.-
T Consensus 284 ~Al~a~L~I~~ 294 (422)
T KOG3873|consen 284 EALMATLKIFK 294 (422)
T ss_pred hhheeEEEeec
Confidence 99999998764
No 21
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=88.62 E-value=0.16 Score=45.01 Aligned_cols=33 Identities=21% Similarity=0.114 Sum_probs=17.2
Q ss_pred CCcccceeeecCCeeE-EeeccCCCcCCCCcCce
Q 006198 569 PAWCDRILWLGKGIKQ-LAYTRAEILLSDHRPVS 601 (657)
Q Consensus 569 PSWCDRIL~~g~~i~~-l~Y~s~e~~~SDHrPV~ 601 (657)
.+-=|+||....-... ..-.......|||+||+
T Consensus 86 ~s~iD~~~~s~~~~~~~~~~~~~~~~~SDH~~I~ 119 (119)
T PF14529_consen 86 GSRIDLILTSDNLLSWCVWVISSDDSGSDHCPIT 119 (119)
T ss_dssp EE--EEEEEECCGCCCEEEEEETTSSSSSB--EE
T ss_pred CceEEEEEECChHHhcCcEEEeCCCCCCCccCCC
Confidence 4556888887643322 11122456789999985
No 22
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=87.59 E-value=0.096 Score=55.25 Aligned_cols=34 Identities=35% Similarity=0.715 Sum_probs=24.8
Q ss_pred EEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006198 108 TIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (657)
Q Consensus 108 fvgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (657)
.+-||||||.--.-.. +-+||....| || |++||+
T Consensus 2 kI~SwNVNgiRar~~~-~~~~l~~~~p-DV--lclQEt 35 (261)
T COG0708 2 KIASWNVNGLRARLKK-LLDWLEEEQP-DV--LCLQET 35 (261)
T ss_pred eeEEEehhhHHHHHHH-HHHHHHHhCC-CE--EEEEec
Confidence 4789999995332222 7899976555 86 899999
No 23
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=86.30 E-value=2 Score=45.91 Aligned_cols=61 Identities=21% Similarity=0.365 Sum_probs=40.5
Q ss_pred EEEEEcCeEEEeeccccCCCCCChhHHHHHhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCccccccc
Q 006198 428 VSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLN 498 (657)
Q Consensus 428 Vs~~l~~Ts~cFVn~HLaAgek~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~ 498 (657)
+-..+.+..+||.++||.+-... ..+|.+.+.+.+.+++=- + .++..-.||+-||+|.|=.
T Consensus 197 ~Ev~v~G~Kl~l~tsHLEStr~h--~P~r~~qF~~~~~k~~Ea-I-------e~lPnA~ViFGGD~NlrD~ 257 (349)
T KOG2756|consen 197 VEVNVSGNKLCLMTSHLESTRGH--APERMNQFKMVLKKMQEA-I-------ESLPNATVIFGGDTNLRDR 257 (349)
T ss_pred EEEeecCceEEEEeccccCCCCC--ChHHHHHHHHHHHHHHHH-H-------HhCCCceEEEcCcccchhh
Confidence 34456788899999999997643 456777777666544310 0 0112347999999999843
No 24
>PRK11756 exonuclease III; Provisional
Probab=78.84 E-value=0.51 Score=48.64 Aligned_cols=34 Identities=18% Similarity=0.400 Sum_probs=22.9
Q ss_pred EEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006198 108 TIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (657)
Q Consensus 108 fvgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (657)
.|.||||+|..-.- ..|.+||... .||| |+|||+
T Consensus 2 ri~T~Nv~g~~~~~-~~i~~~i~~~-~pDI--i~LQE~ 35 (268)
T PRK11756 2 KFVSFNINGLRARP-HQLEAIIEKH-QPDV--IGLQET 35 (268)
T ss_pred EEEEEEcCCHHHHH-HHHHHHHHhc-CCCE--EEEEec
Confidence 46799999953211 1267888543 4687 669998
No 25
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=74.05 E-value=4.4 Score=46.35 Aligned_cols=92 Identities=22% Similarity=0.200 Sum_probs=57.0
Q ss_pred EEEEeccccccccceeEe--EEeecccccccCceEEEEEEEEcCe---EEEeeccccCCCCCChhHHHHHhhHHHHHhhc
Q 006198 393 SIWVRKRLRRHINNLKVS--PVGVGLMGYMGNKGSVSVSMTLFQS---RLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRT 467 (657)
Q Consensus 393 ~VfVr~~l~~~I~~v~vs--~VgtGi~G~lGNKGaVsVs~~l~~T---s~cFVn~HLaAgek~~~~~rRN~D~~eIlrr~ 467 (657)
+|+-+..+-+.+.+-.+. -.+.|++..-.-++.|+..|++-+. -++..|+||-=+...+++ |-+++.-|+..+
T Consensus 205 ai~w~~~~F~lv~~~~l~y~~~~~~l~n~~NV~lvv~l~f~~~~~~sq~ilVanTHLl~np~~~~v--rL~Q~~iiL~~~ 282 (495)
T KOG2338|consen 205 AILWHSAKFKLVNHSELNYFDSGSALANRDNVGLVVSLEFRLVDESSQGILVANTHLLFNPSRSDV--RLAQVYIILAEL 282 (495)
T ss_pred EEEEecccceecccchhhcccccchhhcccceeEEEEEEecccCcccCceEEEeeeeeecCcccch--hhHHHHHHHHHH
Confidence 344455544444333322 3566666543336677777766655 899999999988776654 667777777654
Q ss_pred C-cCCCCCCCCCCCCCCcceEEEeCccc
Q 006198 468 R-FSSVFDTDQPQTIPSHDQIFWFGDLN 494 (657)
Q Consensus 468 ~-F~~~~~~~~p~~I~dhD~Vfw~GDLN 494 (657)
. |.... ..|=.||++||||
T Consensus 283 ~~~~~~~--------~~~~pi~l~GDfN 302 (495)
T KOG2338|consen 283 EKMSKSS--------KSHWPIFLCGDFN 302 (495)
T ss_pred HHHHhhc--------ccCCCeEEecCCC
Confidence 2 21100 0355899999999
No 26
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=70.12 E-value=1.7 Score=43.80 Aligned_cols=54 Identities=11% Similarity=0.134 Sum_probs=30.4
Q ss_pred eEEEeeccccCCCCCChh--HHHHHhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCccccccc
Q 006198 435 SRLCLVCSHLTSGQKDGA--EQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLN 498 (657)
Q Consensus 435 Ts~cFVn~HLaAgek~~~--~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~ 498 (657)
..|.++|+|++++...+. ...|.+.+..+.+.+. . .+.....+|++||||--..
T Consensus 100 ~~~~i~~vy~p~~~~~~~~~~~~r~~~~~~l~~~~~--~--------~~~~~~~~Il~GDFN~~~~ 155 (255)
T TIGR00633 100 DGFTVVNVYVPNGGSRGLERLEYKLQFWDALFQYYE--K--------ELDAGKPVIICGDMNVAHT 155 (255)
T ss_pred CCEEEEEEEccCCCCCCchhHHHHHHHHHHHHHHHH--H--------HHhcCCcEEEEeecccCCC
Confidence 468899999988763222 2334444444433210 0 0012347999999996553
No 27
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=69.53 E-value=7.6 Score=41.44 Aligned_cols=47 Identities=13% Similarity=0.208 Sum_probs=26.9
Q ss_pred EEEeeccccCCCCCChhHHHHHhhHHH-HHhhcCcCCCCCCCCCCCCCCcceEEEeCccccccc
Q 006198 436 RLCLVCSHLTSGQKDGAEQRRNSDVSE-IRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLN 498 (657)
Q Consensus 436 s~cFVn~HLaAgek~~~~~rRN~D~~e-Ilrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~ 498 (657)
.|.+|++|+.... ..++...+.+ ++.... . . ..+.||++||||=-.+
T Consensus 143 ~F~li~~H~~p~~----~~~e~~aL~~v~~~~~~--~---------~-~~~~villGDFNa~~~ 190 (276)
T smart00476 143 EFVIVPLHTTPEA----AVAEIDALYDVYLDVRQ--K---------W-GTEDVIFMGDFNAGCS 190 (276)
T ss_pred cEEEEEecCChHH----HHHHHHHHHHHHHHHHH--h---------h-ccCCEEEEccCCCCCC
Confidence 6899999998852 2333333222 222110 0 0 1356999999997443
No 28
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=68.33 E-value=1.7 Score=44.42 Aligned_cols=53 Identities=9% Similarity=0.201 Sum_probs=27.9
Q ss_pred EEEeeccccCCCCCCh--hHHHHHhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCccccccc
Q 006198 436 RLCLVCSHLTSGQKDG--AEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLN 498 (657)
Q Consensus 436 s~cFVn~HLaAgek~~--~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~ 498 (657)
.|.++|+|+.++.... ....|.+-+..|...+. ... .....||++||||-...
T Consensus 98 ~~~l~~~~~p~~~~~~~~~~~~r~~~~~~l~~~~~--~~~--------~~~~pvIi~GDfN~~~~ 152 (254)
T TIGR00195 98 SFLVINGYFPNGSRDDSEKLPYKLQWLEALQNYLE--KLV--------DKDKPVLICGDMNIAPT 152 (254)
T ss_pred CEEEEEEEccCCCCCCCccHHHHHHHHHHHHHHHH--HHH--------hcCCcEEEEeecccCCC
Confidence 4889999999853222 12233333333332211 000 01236999999995543
No 29
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=62.61 E-value=5.9 Score=42.28 Aligned_cols=54 Identities=13% Similarity=0.174 Sum_probs=34.5
Q ss_pred CceEEEEEEEEcCeEEEeeccccCCCCCChhHHHHHhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCccc
Q 006198 422 NKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLN 494 (657)
Q Consensus 422 NKGaVsVs~~l~~Ts~cFVn~HLaAgek~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLN 494 (657)
....+++++ .+ +.|.+.||.+... ..|.+-+..|..- |.+ ..| +.-++++||||
T Consensus 141 ~Rpilgi~i--~~--~~ffstH~~a~~~----~da~aiV~~I~~~--f~~----~~~-----~~pw~I~GDFN 194 (271)
T PRK15251 141 SRPIIGIRI--GN--DVFFSIHALANGG----TDAGAIVRAVHNF--FRP----NMR-----HINWMIAGDFN 194 (271)
T ss_pred ccceEEEEe--cC--eEEEEeeecCCCC----ccHHHHHHHHHHH--Hhh----ccC-----CCCEEEeccCC
Confidence 456666665 22 7899999999732 1266777777653 210 111 34689999999
No 30
>PRK05421 hypothetical protein; Provisional
Probab=53.06 E-value=7.4 Score=40.51 Aligned_cols=36 Identities=28% Similarity=0.331 Sum_probs=21.8
Q ss_pred EEEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006198 106 RVTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (657)
Q Consensus 106 rifvgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (657)
.+.|-||||.+..-......-.++ ...||| |+|||+
T Consensus 43 ~lri~t~NI~~~~~~~~~~~l~~l--~~~~Di--I~LQEv 78 (263)
T PRK05421 43 RLRLLVWNIYKQQRAGWLSVLKNL--GKDADL--VLLQEA 78 (263)
T ss_pred ceeEEEEEccccccccHHHHHHHh--ccCCCE--EEEEec
Confidence 367889999985532221122334 344565 889999
No 31
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=42.31 E-value=47 Score=35.67 Aligned_cols=38 Identities=32% Similarity=0.615 Sum_probs=25.6
Q ss_pred EEEeeeeCCCCCCCCCCCccccc-------CCCCCCCEEEEeeeeeeeCC
Q 006198 107 VTIGTWNVAGRQPYEDLDIDDWL-------CTQEPADIYIFGFQEVVPLN 149 (657)
Q Consensus 107 ifvgTwNV~G~~p~~~ldl~~WL-------~~~~~~DIYvlGfQEiV~Ln 149 (657)
..|||||+.|..-..+ +.|= ..++++|| |-|||.=.|.
T Consensus 25 ~~~~twn~qg~s~~~~---~kw~~~v~~l~~~~~~~DI--la~QEags~p 69 (271)
T PRK15251 25 YKVATWNLQGSSASTE---SKWNVNVRQLLSGENPADI--LMVQEAGSLP 69 (271)
T ss_pred ceEEEeecCCCCCCCh---hhhhhhHHHHhcCCCCCCE--EEEEecCCCc
Confidence 4589999999755444 4564 33467887 6789984333
No 32
>TIGR02616 tnaC_leader tryptophanase leader peptide. Members of this family are the apparent leader peptides of tryptophanase operons in Esherichia coli, Vibrio cholerae, Photobacterium profundum, Haemophilus influenzae type b, and related species. All members of the seed alignment are examples ORFs upstream of tryptophanase, with a start codon, a conserved single Trp residue, and several other conserved residues. It is suggested (Konan KV and Yanofsky C) that the nascent peptide interacts with the ribosome once (if) the ribosome reaches the stop codon. Note that this model describes a much broader set (and shorter protein region) than Pfam model pfam08053.
Probab=26.52 E-value=15 Score=26.13 Aligned_cols=16 Identities=38% Similarity=0.764 Sum_probs=12.8
Q ss_pred HHHhhhccCCCCcccc
Q 006198 17 VMKKWLNIKPKVYDFS 32 (657)
Q Consensus 17 v~~Kwlni~~~~~df~ 32 (657)
+..|||||-++-++|-
T Consensus 6 ~~s~WfniD~rIsf~F 21 (26)
T TIGR02616 6 VLSKWFNIDNRISFFF 21 (26)
T ss_pred cCCceEEcchhheecc
Confidence 4679999999877763
No 33
>PF08053 Tna_leader: Tryptophanese operon leader peptide; InterPro: IPR012620 This entry defines the apparent leader peptides of tryptophanase operons in Escherichia coli, Vibrio cholerae, Photobacterium profundum, Haemophilus influenzae, and related species. It has been suggested that these peptides act in cis to alter the behaviour of the translating ribosome []. The tryptophanese (tna) operon leader peptide catalyses the degradation of L-tryptophan to indole, pyruvate and ammonia, enabling the bacteria to utilise tryptophan as a source of carbon, nitrogen and energy. The tna operon of Escherichia coli contains two major structural genes, tnaA and tnaB. Preceding tnaA in the tna operon is a 319 -nucleotide transcribed regulatory region that contains the coding region for a 24-residue leader peptide, TnaC. The RNA sequence in the vicinity of the tnaC stop codon is rich in Cytidylate residues which is required for efficient Rho -dependent termination in the leader region of the tna operon [].; GO: 0031554 regulation of transcription termination, DNA-dependent, 0031556 transcriptional attenuation by ribosome
Probab=24.74 E-value=15 Score=25.00 Aligned_cols=14 Identities=50% Similarity=0.942 Sum_probs=10.5
Q ss_pred HHHhhhccCCCCcc
Q 006198 17 VMKKWLNIKPKVYD 30 (657)
Q Consensus 17 v~~Kwlni~~~~~d 30 (657)
|-.|||||..|--|
T Consensus 8 vtskwfnidnkivd 21 (24)
T PF08053_consen 8 VTSKWFNIDNKIVD 21 (24)
T ss_pred EeeeeEeccCeecc
Confidence 34699999887654
No 34
>KOG3870 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.45 E-value=35 Score=38.51 Aligned_cols=15 Identities=40% Similarity=0.769 Sum_probs=13.1
Q ss_pred CCcceEEEeCccccc
Q 006198 482 PSHDQIFWFGDLNYR 496 (657)
Q Consensus 482 ~dhD~Vfw~GDLNYR 496 (657)
...+.||+=||||||
T Consensus 350 ~~S~LvIFKGDLNYR 364 (434)
T KOG3870|consen 350 QKSSLVIFKGDLNYR 364 (434)
T ss_pred hhCcEEEEeccccHH
Confidence 457899999999998
No 35
>PRK09806 tryptophanase leader peptide; Provisional
Probab=21.33 E-value=18 Score=25.01 Aligned_cols=15 Identities=47% Similarity=0.877 Sum_probs=11.0
Q ss_pred HHHhhhccCCCCccc
Q 006198 17 VMKKWLNIKPKVYDF 31 (657)
Q Consensus 17 v~~Kwlni~~~~~df 31 (657)
|-.|||||..|--|.
T Consensus 8 vtskwfnidnkivdh 22 (26)
T PRK09806 8 VTSKWFNIDNKIVDH 22 (26)
T ss_pred EeeeEEeccCeeecc
Confidence 346999998876553
Done!