Query 006199
Match_columns 657
No_of_seqs 362 out of 1498
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 19:49:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006199.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006199hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03547 Mem_trans: Membrane t 100.0 3E-45 6.4E-50 389.1 33.2 380 10-652 2-385 (385)
2 TIGR00946 2a69 he Auxin Efflux 100.0 6.3E-42 1.4E-46 358.6 35.2 151 500-656 171-321 (321)
3 PRK09903 putative transporter 100.0 7.2E-41 1.6E-45 350.5 35.9 147 503-656 165-311 (314)
4 COG0679 Predicted permeases [G 100.0 2.8E-39 6.1E-44 339.2 37.2 303 7-654 2-306 (311)
5 KOG2722 Predicted membrane pro 99.5 2.4E-14 5.1E-19 152.3 11.3 143 501-644 238-392 (408)
6 TIGR00841 bass bile acid trans 99.0 3.1E-09 6.7E-14 111.3 13.4 108 548-655 12-120 (286)
7 TIGR00832 acr3 arsenical-resis 98.6 2.6E-06 5.5E-11 91.4 18.8 142 505-653 4-154 (328)
8 COG0385 Predicted Na+-dependen 98.6 1.2E-06 2.6E-11 93.5 15.7 120 534-654 29-149 (319)
9 PF01758 SBF: Sodium Bile acid 98.5 2.9E-06 6.2E-11 83.5 13.7 107 549-655 3-111 (187)
10 PF13593 DUF4137: SBF-like CPA 97.9 0.0002 4.4E-09 76.5 13.9 139 511-654 1-145 (313)
11 COG0798 ACR3 Arsenite efflux p 96.9 0.028 6E-07 61.0 15.4 142 502-651 9-160 (342)
12 PF04172 LrgB: LrgB-like famil 95.2 0.56 1.2E-05 48.3 14.6 143 502-653 12-156 (215)
13 PRK10711 hypothetical protein; 95.0 0.69 1.5E-05 48.1 14.7 140 506-653 27-167 (231)
14 PRK04288 antiholin-like protei 94.6 2.1 4.6E-05 44.7 17.0 139 506-654 32-173 (232)
15 TIGR00841 bass bile acid trans 94.5 0.38 8.3E-06 50.9 11.8 137 7-151 133-275 (286)
16 TIGR00659 conserved hypothetic 94.5 1.4 2.9E-05 45.9 15.4 139 506-652 26-165 (226)
17 PF03601 Cons_hypoth698: Conse 94.4 0.77 1.7E-05 49.5 13.8 143 509-657 25-171 (305)
18 COG1346 LrgB Putative effector 94.2 1.3 2.9E-05 46.0 14.4 140 502-651 25-167 (230)
19 PRK03659 glutathione-regulated 92.0 4.9 0.00011 47.0 16.7 135 510-652 237-373 (601)
20 PF03812 KdgT: 2-keto-3-deoxyg 91.5 2.3 5E-05 46.1 12.1 87 547-635 48-142 (314)
21 COG2855 Predicted membrane pro 91.2 1.8 3.8E-05 47.4 10.9 136 512-656 39-179 (334)
22 PF05684 DUF819: Protein of un 90.9 7.9 0.00017 43.0 15.9 136 11-154 22-167 (378)
23 PRK03562 glutathione-regulated 90.7 8.2 0.00018 45.4 16.8 133 511-651 241-375 (621)
24 PRK12460 2-keto-3-deoxyglucona 87.1 3.8 8.3E-05 44.5 9.8 82 512-603 168-249 (312)
25 TIGR00698 conserved hypothetic 87.0 5.8 0.00013 43.5 11.3 90 510-604 31-121 (335)
26 PRK10669 putative cation:proto 86.7 18 0.00039 41.7 15.7 135 510-652 248-384 (558)
27 TIGR00844 c_cpa1 na(+)/h(+) an 86.5 13 0.00027 45.3 14.5 92 503-600 30-129 (810)
28 TIGR00932 2a37 transporter, mo 85.8 38 0.00082 35.1 16.2 94 500-602 6-102 (273)
29 KOG2718 Na+-bile acid cotransp 84.2 1.3 2.9E-05 49.0 4.8 108 548-656 117-227 (371)
30 PF13593 DUF4137: SBF-like CPA 80.5 22 0.00047 38.5 12.2 112 14-128 164-283 (313)
31 PRK03562 glutathione-regulated 74.5 67 0.0015 38.0 15.0 116 502-625 21-138 (621)
32 TIGR03082 Gneg_AbrB_dup membra 73.9 90 0.0019 30.3 15.7 122 508-641 16-142 (156)
33 PRK05326 potassium/proton anti 73.0 58 0.0013 37.7 13.8 94 500-601 20-117 (562)
34 TIGR00783 ccs citrate carrier 72.4 20 0.00044 39.6 9.3 98 17-117 207-315 (347)
35 PRK10669 putative cation:proto 70.5 1.1E+02 0.0023 35.5 15.2 93 501-601 21-114 (558)
36 PLN03159 cation/H(+) antiporte 70.5 1E+02 0.0022 38.0 15.5 82 502-589 59-148 (832)
37 PRK12460 2-keto-3-deoxyglucona 70.4 17 0.00036 39.7 8.1 85 549-635 50-137 (312)
38 TIGR00793 kdgT 2-keto-3-deoxyg 69.1 10 0.00022 41.3 6.0 84 550-635 51-142 (314)
39 COG0475 KefB Kef-type K+ trans 67.6 1.1E+02 0.0023 34.3 13.9 128 507-641 26-157 (397)
40 PRK03659 glutathione-regulated 65.2 1.5E+02 0.0033 34.8 15.2 115 503-625 22-138 (601)
41 COG0798 ACR3 Arsenite efflux p 63.0 82 0.0018 34.9 11.5 142 2-147 172-325 (342)
42 PRK05326 potassium/proton anti 62.2 88 0.0019 36.3 12.4 108 510-624 244-351 (562)
43 PF05982 DUF897: Domain of unk 61.7 81 0.0018 34.8 11.2 136 501-644 167-306 (327)
44 COG0385 Predicted Na+-dependen 61.2 77 0.0017 34.8 10.9 125 16-148 169-301 (319)
45 TIGR00832 acr3 arsenical-resis 58.3 63 0.0014 35.2 9.8 116 536-651 205-324 (328)
46 KOG4821 Predicted Na+-dependen 57.9 21 0.00046 37.3 5.7 91 553-646 63-158 (287)
47 COG3329 Predicted permease [Ge 56.2 85 0.0018 34.6 10.0 64 498-564 204-267 (372)
48 TIGR00844 c_cpa1 na(+)/h(+) an 53.4 1.3E+02 0.0028 37.0 12.0 108 511-623 265-378 (810)
49 PF05145 AmoA: Putative ammoni 52.2 3.5E+02 0.0075 29.5 16.5 122 511-644 178-302 (318)
50 COG5505 Predicted integral mem 51.0 2.1E+02 0.0047 31.7 12.0 115 514-644 251-367 (384)
51 PF05684 DUF819: Protein of un 46.9 4.6E+02 0.01 29.4 15.9 130 510-646 25-159 (378)
52 PF05145 AmoA: Putative ammoni 45.9 4.3E+02 0.0093 28.7 14.9 57 578-638 60-117 (318)
53 PRK03818 putative transporter; 44.5 4.4E+02 0.0095 31.0 14.3 74 531-611 51-128 (552)
54 TIGR00783 ccs citrate carrier 40.2 2.7E+02 0.0059 31.1 11.1 103 32-137 7-123 (347)
55 PF03547 Mem_trans: Membrane t 39.4 4.6E+02 0.0099 28.3 12.8 98 512-615 8-105 (385)
56 PRK15060 L-dehydroascorbate tr 38.8 6.5E+02 0.014 28.8 16.5 92 531-638 294-397 (425)
57 TIGR03802 Asp_Ala_antiprt aspa 38.0 3.7E+02 0.008 31.6 12.4 76 517-604 42-119 (562)
58 TIGR00819 ydaH p-Aminobenzoyl- 37.6 7.5E+02 0.016 29.1 14.6 115 537-657 371-500 (513)
59 PRK05274 2-keto-3-deoxyglucona 36.7 93 0.002 34.2 6.9 59 549-609 204-262 (326)
60 COG3329 Predicted permease [Ge 35.8 3.8E+02 0.0083 29.8 11.0 53 497-559 4-56 (372)
61 COG0598 CorA Mg2+ and Co2+ tra 33.7 2.6E+02 0.0057 30.2 9.7 26 46-71 268-296 (322)
62 PRK09546 zntB zinc transporter 33.7 86 0.0019 33.7 6.0 25 43-67 267-291 (324)
63 PF03616 Glt_symporter: Sodium 32.4 3.1E+02 0.0068 30.5 10.2 61 43-105 277-340 (368)
64 PLN03159 cation/H(+) antiporte 30.4 9.2E+02 0.02 29.9 14.6 85 511-603 294-381 (832)
65 PF03390 2HCT: 2-hydroxycarbox 30.4 3.3E+02 0.0071 31.1 10.0 102 15-118 271-383 (414)
66 PF03222 Trp_Tyr_perm: Tryptop 29.1 8.4E+02 0.018 27.2 16.3 47 607-653 184-237 (394)
67 COG0475 KefB Kef-type K+ trans 28.7 8.6E+02 0.019 27.2 15.7 53 507-564 240-293 (397)
68 COG3180 AbrB Putative ammonia 28.4 8.9E+02 0.019 27.2 16.4 81 553-637 63-149 (352)
69 TIGR00400 mgtE Mg2+ transporte 27.0 4.3E+02 0.0093 30.0 10.3 34 609-643 398-431 (449)
70 TIGR00698 conserved hypothetic 26.9 4.2E+02 0.0091 29.3 9.9 47 533-580 269-315 (335)
71 TIGR00946 2a69 he Auxin Efflux 26.9 7.9E+02 0.017 26.1 15.3 105 502-614 4-110 (321)
72 PRK04972 putative transporter; 26.8 1.1E+03 0.023 27.9 13.8 73 518-604 45-121 (558)
73 PF12273 RCR: Chitin synthesis 25.9 62 0.0013 30.4 2.9 23 69-91 2-24 (130)
74 PF10766 DUF2592: Protein of u 24.0 1.4E+02 0.0029 23.5 3.8 25 502-526 3-27 (41)
75 PF03601 Cons_hypoth698: Conse 23.2 2.8E+02 0.006 30.2 7.6 136 14-154 26-168 (305)
76 PRK12585 putative monovalent c 23.1 2E+02 0.0043 29.7 5.9 62 532-594 28-89 (197)
77 TIGR03109 exosortase_1 exosort 22.1 4E+02 0.0087 28.5 8.4 89 531-619 127-218 (267)
78 COG3493 CitS Na+/citrate sympo 21.9 5.9E+02 0.013 29.1 9.8 90 16-108 292-390 (438)
79 PF01544 CorA: CorA-like Mg2+ 21.9 82 0.0018 32.3 3.2 32 39-71 234-268 (292)
80 TIGR00831 a_cpa1 Na+/H+ antipo 21.1 1.3E+03 0.029 26.7 15.9 83 509-600 20-105 (525)
81 PRK10472 low affinity gluconat 20.4 1.3E+03 0.029 26.5 16.3 37 611-650 156-192 (445)
No 1
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=3e-45 Score=389.15 Aligned_cols=380 Identities=30% Similarity=0.444 Sum_probs=298.8
Q ss_pred HHHHHHHHHHHHHHHHhHhhhccccChhhhhHHHHHHHHHHhHHHHHHHhhcCCcc-cc-hHHHHHHHH-HHHHHHHHHH
Q 006199 10 VLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPY-AM-NFRFIAADT-LQKIIMLFVL 86 (657)
Q Consensus 10 Il~~ilPIFlLI~LGYla~R~~glfs~e~~~gLnkFV~~~ALPaLLF~~iA~~dl~-~l-~~~filAy~-l~~livfll~ 86 (657)
+++.++|+|+++++||+++|+ |++++++.++++++|+|+++|||+|..+++.+.. ++ ++.++..+. +..++.++++
T Consensus 2 v~~~i~~i~~ii~~G~~~~~~-~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (385)
T PF03547_consen 2 VFSAILPIFLIILLGYLLGRF-GILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLLG 80 (385)
T ss_pred cHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999998 9999999999999999999999999999997543 34 544443333 3333444444
Q ss_pred HHHHHHhcCCCcchhhHhHhh-hccCCcceehHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhcc
Q 006199 87 GIWTNFTKNGSLEWMITIFSL-STLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQF 165 (657)
Q Consensus 87 ~l~ar~~~~~~l~~~aav~~L-ssfsNtgfmGiPLl~alfG~~a~~~lalivvv~~ill~tl~l~L~E~~~a~~~~~~~~ 165 (657)
+++.++.+.. .++ ...+.+ ++|+|++++|+|++.++||+++..++.++.+++++++|+++..++|.++++....++.
T Consensus 81 ~~~~~~~~~~-~~~-~~~~~~~~~~~N~~~lglpi~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~ 158 (385)
T PF03547_consen 81 FLLSRLFRLP-KEW-RGVFVLAASFGNTGFLGLPILQALFGERGVAYAIIFDVVNNIILWSLGYFLLESRSEKEDKSEEE 158 (385)
T ss_pred HHHHHhcCCC-ccc-ceEEEecccCCcchhhHHHHHHHHhcchhhhhehHHHHhhHHHHHHHHHHhhccccccccccccc
Confidence 4454533322 222 334455 5899999999999999999999999999999999999999999999988887777777
Q ss_pred cccccccceeeecCcccccCCccccccccccCCCCceEEEEeecCCCcCCCCCCCCCCCCCCCCCCCCcccccccCCCCC
Q 006199 166 PETAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGPCSLPALTPRPSNLTGAEIYSLSSSRNP 245 (657)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (657)
+++..+..+.+.|++..+.++.++.++|.++++|++.+...++..++.++..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 210 (385)
T PF03547_consen 159 PSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSSTPSQSSASAPSSV---------------------------- 210 (385)
T ss_pred ccccccccccccCCccccCCcccccccccccccCCcccccccccccccchhh----------------------------
Confidence 7778889999999999999999999999999998776654332221111000
Q ss_pred CCCCCCCCCcchhhhccCCCCCCCCCCCCCCCCccccccCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCC
Q 006199 246 TPRGSNFNHSDFYSMMGVQGFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENSGQALSSPRFGFYPAQTVPTSYPAPNP 325 (657)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (657)
..+|+
T Consensus 211 -----------------------------------------~~~~~---------------------------------- 215 (385)
T PF03547_consen 211 -----------------------------------------STSPS---------------------------------- 215 (385)
T ss_pred -----------------------------------------ccCCc----------------------------------
Confidence 00000
Q ss_pred CCccccccccccccchhhhHHHHHHHHHhhhhhcccccCCccccchheeeecCCCCCCcCCCCcccccccCCCCCCCCCC
Q 006199 326 EFSSTLTKNTSKTVQNNQQQQQQQQQQQQQQNVNVNSKANHDAKELHMFVWSSSTSPVSEGGGLHVFGGTDFGASEHSGR 405 (657)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (657)
. .
T Consensus 216 -----------~-----------------------------------------------~-------------------- 217 (385)
T PF03547_consen 216 -----------P-----------------------------------------------S-------------------- 217 (385)
T ss_pred -----------c-----------------------------------------------c--------------------
Confidence 0 0
Q ss_pred CccchhhHhHhhcCCCCCCcCCCCCCCCCCCCcccccCCCCCCCCccccccCCCcccccccCCCCccccCcccccccccC
Q 006199 406 SDQGAKEIRMLVADHPENGENKALPQNGDFGREDFRFAGRGEGEDDQMDHKEGGPAELNKLGSNSTAELHPKATGAADAG 485 (657)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (657)
... . .+ . +
T Consensus 218 ~~~------------------------~---~~-----------~--------------------------~-------- 225 (385)
T PF03547_consen 218 NST------------------------G---AE-----------Q--------------------------K-------- 225 (385)
T ss_pred ccc------------------------h---hh-----------h--------------------------h--------
Confidence 000 0 00 0 0
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccch
Q 006199 486 MGKHMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQP 565 (657)
Q Consensus 486 ~~~~~p~~~~~~~~il~~vlkkllrNP~IiAilLGLilsll~~r~gi~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~ 565 (657)
...+++..+++.+++.++||+++|+++|+++++++....+.+|.++.++++++|++++|++||++|+.|+..+
T Consensus 226 -------~~~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~ 298 (385)
T PF03547_consen 226 -------SSNSTRKKLKKSILKLFKNPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGP 298 (385)
T ss_pred -------hhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 0002355667888899999999999999999999333333344999999999999999999999999999864
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhccChhhhHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 006199 566 KIIACGNSVATFSMAVRFLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIAL 645 (657)
Q Consensus 566 k~~~~~~k~vl~i~~iKLIl~PLLv~ll~~l~gL~~~~~~V~VL~AAmP~Av~s~IfA~~Yg~d~elaSsaVllSTLLSL 645 (657)
+....+++.....+++|++++|++++++++++++++....++++++++|+|++.+++|++||.+++.+++.++++|++++
T Consensus 299 ~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~~~~~~~~~~~ 378 (385)
T PF03547_consen 299 RKSALGWKPSIIAVLVRLIILPLIGIGIVFLLGLDGDMARVLILQAAMPTAINSFVIASLYGLDEEEASSIVFWSTLLSI 378 (385)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 33344566667789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 006199 646 PITLVYY 652 (657)
Q Consensus 646 ptiil~~ 652 (657)
+++++|+
T Consensus 379 ~~~~~~~ 385 (385)
T PF03547_consen 379 PTLPLWI 385 (385)
T ss_pred HHHHHHC
Confidence 9999885
No 2
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=100.00 E-value=6.3e-42 Score=358.59 Aligned_cols=151 Identities=46% Similarity=0.686 Sum_probs=142.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhccchHHHHHH
Q 006199 500 ILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSM 579 (657)
Q Consensus 500 il~~vlkkllrNP~IiAilLGLilsll~~r~gi~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~k~~~~~~k~vl~i~ 579 (657)
.+++.+|++++||+++|+++|++++++ |+++|+++.++++++|++++|++||++|+.+...+ .+++++.++..+
T Consensus 171 ~~~~~~~~~~~nP~iia~i~Gl~~~~~----~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~--~~~~~~~~~~~~ 244 (321)
T TIGR00946 171 MLIFVWKKLIKFPPLWAPLLSVILSLV----GFKMPGLILKSISILSGATTPMALFSLGLALSPRK--IKLGVRDAILAL 244 (321)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH----hhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhh--hccChHHHHHHH
Confidence 345778899999999999999999999 99999999999999999999999999999998752 345678899999
Q ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhccChhhhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006199 580 AVRFLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVYYIVLG 656 (657)
Q Consensus 580 ~iKLIl~PLLv~ll~~l~gL~~~~~~V~VL~AAmP~Av~s~IfA~~Yg~d~elaSsaVllSTLLSLptiil~~~LLg 656 (657)
++|++++|++++++..++++++...+++++++|||+|.+++++|++||.|++.+++++++||++|++++++|.+++|
T Consensus 245 ~~klil~P~i~~~~~~~~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~l~~ 321 (321)
T TIGR00946 245 IVRFLVQPAVMAGISKLIGLRGLELSVAILQAALPGGAVAAVLATEYEVDVELASTAVTLSTVLSLISLPLFIILLG 321 (321)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHcCChhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999886
No 3
>PRK09903 putative transporter YfdV; Provisional
Probab=100.00 E-value=7.2e-41 Score=350.54 Aligned_cols=147 Identities=16% Similarity=0.307 Sum_probs=135.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhccchHHHHHHHHH
Q 006199 503 MVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVR 582 (657)
Q Consensus 503 ~vlkkllrNP~IiAilLGLilsll~~r~gi~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~k~~~~~~k~vl~i~~iK 582 (657)
+.+|+++|||+++|+++|++++++ |+++|++++++++++|++++|+|||++|++|+..+ . + ..+..+..+++|
T Consensus 165 ~~l~~~~~nP~iia~~~gl~~~l~----~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~-~-~-~~~~~~~~~~~K 237 (314)
T PRK09903 165 SALISAAKEPVVWAPVLATILVLV----GVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHK-F-E-FSAEIAYNTFLK 237 (314)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-c-c-ccHHHHHHHHHH
Confidence 556678999999999999999999 99999999999999999999999999999999863 2 2 235677889999
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHhccChhhhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006199 583 FLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVYYIVLG 656 (657)
Q Consensus 583 LIl~PLLv~ll~~l~gL~~~~~~V~VL~AAmP~Av~s~IfA~~Yg~d~elaSsaVllSTLLSLptiil~~~LLg 656 (657)
++++|+++++++.++++++.+.+++++++|||+|++++++|++||.|++.++++|++||++|+.++++|.+++.
T Consensus 238 li~~P~i~~~~~~~~~l~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l~~ 311 (314)
T PRK09903 238 LILMPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVSR 311 (314)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888999999999999999999999999999999999999999999999999999999888764
No 4
>COG0679 Predicted permeases [General function prediction only]
Probab=100.00 E-value=2.8e-39 Score=339.21 Aligned_cols=303 Identities=24% Similarity=0.504 Sum_probs=265.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhccccChhhhhHHHHHHHHHHhHHHHHHHhhcCCcccc-hHHHHHHHHHHHHHHHHH
Q 006199 7 LYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAM-NFRFIAADTLQKIIMLFV 85 (657)
Q Consensus 7 M~~Il~~ilPIFlLI~LGYla~R~~glfs~e~~~gLnkFV~~~ALPaLLF~~iA~~dl~~l-~~~filAy~l~~livfll 85 (657)
|..++..++|+|++|++||+++|+ +.++++..+++++||+|+++|||+|+.+++.+.+.. ++.++.++++++++++++
T Consensus 2 ~~~~~~~vlpi~lii~lGy~~~r~-~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (311)
T COG0679 2 MMIVFEVVLPIFLIILLGYLLKRF-GILDEEAARGLSRLVVYVALPALLFNSIATADLSGLADLGLIVASLVATLLAFFL 80 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh-cccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHHH
Confidence 677899999999999999999998 999999999999999999999999999999999887 899999999999999988
Q ss_pred HHHHHHHhcCCCcchhhHhHhh-hccCCcceehHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhc
Q 006199 86 LGIWTNFTKNGSLEWMITIFSL-STLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQ 164 (657)
Q Consensus 86 ~~l~ar~~~~~~l~~~aav~~L-ssfsNtgfmGiPLl~alfG~~a~~~lalivvv~~ill~tl~l~L~E~~~a~~~~~~~ 164 (657)
..++.++.++++.++ .+.+.+ +.|+|++++|+|++..+||++++.+.+++..++++++++++..+++..+.
T Consensus 81 ~~~~~~~~~~~~~~~-~~~~~~~~~~~N~g~lg~pi~~~~~G~~gl~~~~i~~~~~~~~~~~~g~~~l~~~~~------- 152 (311)
T COG0679 81 LALIGRFLFKLDKRE-TVIFALASAFPNIGFLGLPVALSLFGEKGLAYAVIFLIIGLFLMFTLGVILLARSGG------- 152 (311)
T ss_pred HHHHHHHHhccchhh-HHHHHHHHHhcccchhhHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------
Confidence 877777666554443 334555 58999999999999999999999999999999999999999998874210
Q ss_pred ccccccccceeeecCcccccCCccccccccccCCCCceEEEEeecCCCcCCCCCCCCCCCCCCCCCCCCcccccccCCCC
Q 006199 165 FPETAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGPCSLPALTPRPSNLTGAEIYSLSSSRN 244 (657)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (657)
T Consensus 153 -------------------------------------------------------------------------------- 152 (311)
T COG0679 153 -------------------------------------------------------------------------------- 152 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCcchhhhccCCCCCCCCCCCCCCCCccccccCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCC
Q 006199 245 PTPRGSNFNHSDFYSMMGVQGFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENSGQALSSPRFGFYPAQTVPTSYPAPN 324 (657)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (657)
T Consensus 153 -------------------------------------------------------------------------------- 152 (311)
T COG0679 153 -------------------------------------------------------------------------------- 152 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccccccchhhhHHHHHHHHHhhhhhcccccCCccccchheeeecCCCCCCcCCCCcccccccCCCCCCCCC
Q 006199 325 PEFSSTLTKNTSKTVQNNQQQQQQQQQQQQQQNVNVNSKANHDAKELHMFVWSSSTSPVSEGGGLHVFGGTDFGASEHSG 404 (657)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (657)
++
T Consensus 153 ---------------------------------------------------------------------~~--------- 154 (311)
T COG0679 153 ---------------------------------------------------------------------GT--------- 154 (311)
T ss_pred ---------------------------------------------------------------------Cc---------
Confidence 00
Q ss_pred CCccchhhHhHhhcCCCCCCcCCCCCCCCCCCCcccccCCCCCCCCccccccCCCcccccccCCCCccccCccccccccc
Q 006199 405 RSDQGAKEIRMLVADHPENGENKALPQNGDFGREDFRFAGRGEGEDDQMDHKEGGPAELNKLGSNSTAELHPKATGAADA 484 (657)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (657)
T Consensus 155 -------------------------------------------------------------------------------- 154 (311)
T COG0679 155 -------------------------------------------------------------------------------- 154 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccc
Q 006199 485 GMGKHMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQ 564 (657)
Q Consensus 485 ~~~~~~p~~~~~~~~il~~vlkkllrNP~IiAilLGLilsll~~r~gi~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~ 564 (657)
+...+++.|++++||+++|.++|+++++. |+++|+++++++++++++++|++|+++|++|+..
T Consensus 155 -------------~~~~~~~~~~~~~nP~i~a~i~g~~~~~~----~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~ 217 (311)
T COG0679 155 -------------NKSLLSVLKKLLTNPLIIALILGLLLNLL----GISLPAPLDTAVDLLASAASPLALIALGLSLAFL 217 (311)
T ss_pred -------------hhHHHHHHHHHHhCcHHHHHHHHHHHHHc----CCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchh
Confidence 00124667789999999999999999999 9999999999999999999999999999999995
Q ss_pred hhhhhccchHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhccChhhhHHHHHHHcCCChhHHHHHHHHHHHHH
Q 006199 565 PKIIACGNSVATFSMAVRFLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIA 644 (657)
Q Consensus 565 ~k~~~~~~k~vl~i~~iKLIl~PLLv~ll~~l~gL~~~~~~V~VL~AAmP~Av~s~IfA~~Yg~d~elaSsaVllSTLLS 644 (657)
. ..+...+.++....+|++++|++++++.+++|+++....++++++|||+|++++++|++||.|++.+++.+++||++|
T Consensus 218 ~-~~~~~~~~~~~~~~~kll~~Pl~~~~~~~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~laa~~i~ist~ls 296 (311)
T COG0679 218 K-LKGSKPPIILIALSLKLLLAPLVALLVAKLLGLSGLALQVLVLLSAMPTAVNAYVLARQYGGDPRLAASTILLSTLLS 296 (311)
T ss_pred h-hccccchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhCcHHhHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 2 333445566666677999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 006199 645 LPITLVYYIV 654 (657)
Q Consensus 645 Lptiil~~~L 654 (657)
+.+++.|.++
T Consensus 297 ~~t~p~~~~~ 306 (311)
T COG0679 297 LLTLPLLILL 306 (311)
T ss_pred HHHHHHHHHH
Confidence 8877444444
No 5
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=99.54 E-value=2.4e-14 Score=152.31 Aligned_cols=143 Identities=20% Similarity=0.202 Sum_probs=116.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhh-c---CCCCCc-HHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhccchHH
Q 006199 501 LIMVWRKLIRNPNTYSSLIGLVWSLIAF-R---WHVSMP-KIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVA 575 (657)
Q Consensus 501 l~~vlkkllrNP~IiAilLGLilsll~~-r---~gi~LP-~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~k~~~~~~k~v 575 (657)
.+..+|.+ .+|+++|.++|+++...+. | .|-.-| ..+.+.+.++|+.++|+.++++|..|....+....+.+.+
T Consensus 238 ~~~~L~~i-~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGgnL~~g~~ss~~~~~~i 316 (408)
T KOG2722|consen 238 EKVILKEI-FAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGNLIQGLRSSALKTSVI 316 (408)
T ss_pred HHhhHHHh-cCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhccccccCchhcccCceEE
Confidence 34555554 5899999999999988742 2 122222 4899999999999999999999999987643334455667
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---h---C-CChHHHHHHHHHhccChhhhHHHHHHHcCCChhHHHHHHHHHHHHH
Q 006199 576 TFSMAVRFLTGPAVMAAASIA---V---G-LRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIA 644 (657)
Q Consensus 576 l~i~~iKLIl~PLLv~ll~~l---~---g-L~~~~~~V~VL~AAmP~Av~s~IfA~~Yg~d~elaSsaVllSTLLS 644 (657)
+.+.+.|+++.|++..++... + . -||....|+.|+.++|+|++.--+++.+|..++++|..++|+.++.
T Consensus 317 igiii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL~g~~e~Ecs~il~W~y~va 392 (408)
T KOG2722|consen 317 IGIIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQLNGVAERECSVILFWTYAVA 392 (408)
T ss_pred EEEEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 778899999999998887532 2 3 4678899999999999999999999999999999999999999876
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=99.01 E-value=3.1e-09 Score=111.32 Aligned_cols=108 Identities=16% Similarity=0.102 Sum_probs=94.4
Q ss_pred hHHHHHHHHHhhhcccch-hhhhccchHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhccChhhhHHHHHHHc
Q 006199 548 AGLGMAMFSLGLFMALQP-KIIACGNSVATFSMAVRFLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEY 626 (657)
Q Consensus 548 aa~PLALfvIG~sLa~~~-k~~~~~~k~vl~i~~iKLIl~PLLv~ll~~l~gL~~~~~~V~VL~AAmP~Av~s~IfA~~Y 626 (657)
....++||.+|+.+.... +....+.+.....++.|++++|++++++..++++++.....+++++++|++.+++++++.|
T Consensus 12 ~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~P~~~~s~v~t~~~ 91 (286)
T TIGR00841 12 ILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCCPGGTASNVFTYLL 91 (286)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeCCCchHHHHHHHHh
Confidence 347889999999999864 1122344577888899999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006199 627 NVHPAILSTAVIFGMLIALPITLVYYIVL 655 (657)
Q Consensus 627 g~d~elaSsaVllSTLLSLptiil~~~LL 655 (657)
|.|.++++..+.++|++++.++++|..++
T Consensus 92 ~gn~~la~~~~~~stlls~vt~Pl~l~~~ 120 (286)
T TIGR00841 92 KGDMALSISMTTCSTLLALGMMPLLLYIY 120 (286)
T ss_pred CCCHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888776654
No 7
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=98.59 E-value=2.6e-06 Score=91.44 Aligned_cols=142 Identities=9% Similarity=0.044 Sum_probs=108.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHH-HHHHhHHH------HHHHHHhhhcccch-hhhhccchHHH
Q 006199 505 WRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSIS-ILSDAGLG------MAMFSLGLFMALQP-KIIACGNSVAT 576 (657)
Q Consensus 505 lkkllrNP~IiAilLGLilsll~~r~gi~LP~~L~~~L~-~Lg~aa~P------LALfvIG~sLa~~~-k~~~~~~k~vl 576 (657)
++|.+....++++++|+++... .|......-. .+.....| +.||.+|+.|...+ +...+++|.+.
T Consensus 4 ~~~~~~~~~~~~~i~~~~~g~~-------~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~ 76 (328)
T TIGR00832 4 LERYLTLWIFLAIAAGVGLGVL-------FPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLI 76 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-------ccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHH
Confidence 4455667778888888887776 3433222211 11122333 46888888887754 33345678899
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hCCChHHHHHHHHHhccChhhhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 006199 577 FSMAVRFLTGPAVMAAASIA-VGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVYYI 653 (657)
Q Consensus 577 ~i~~iKLIl~PLLv~ll~~l-~gL~~~~~~V~VL~AAmP~Av~s~IfA~~Yg~d~elaSsaVllSTLLSLptiil~~~ 653 (657)
...+..++++|+++|+++.+ +++++....-+++.+++|.++.+.+++...|+|..++-+...++|++++.+++.+.+
T Consensus 77 ~~~~~qfvi~Plla~~l~~l~~~~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnvalsv~lt~~stLl~~~~~P~l~~ 154 (328)
T TIGR00832 77 LSLFINWIIGPFLMFLLAWLFLRDLFEYIAGLILLGLARCIAMVFVWNQLAKGDPEYTLVLVAVNSLFQVFLYAPLAW 154 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999976 499999999999999999999999999999999999999999999999766655443
No 8
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=98.58 E-value=1.2e-06 Score=93.52 Aligned_cols=120 Identities=14% Similarity=0.122 Sum_probs=100.3
Q ss_pred CcHHHHHHHHHHHHhHHHHHHHHHhhhcccch-hhhhccchHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhc
Q 006199 534 MPKIIEKSISILSDAGLGMAMFSLGLFMALQP-KIIACGNSVATFSMAVRFLTGPAVMAAASIAVGLRGTLLHVAIVQAA 612 (657)
Q Consensus 534 LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~-k~~~~~~k~vl~i~~iKLIl~PLLv~ll~~l~gL~~~~~~V~VL~AA 612 (657)
.|+.....-..+ ..+..+.||..|+.|.... +....+|+..+..++..++++|++.++++.++.++++...-+++.++
T Consensus 29 ~~~~~~~~~~~~-~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l~~~l~~Gl~ll~~ 107 (319)
T COG0385 29 FPETFGWLGSAI-PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPLPPELAVGLLLLGC 107 (319)
T ss_pred ccccchhhhHHH-HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhHHheee
Confidence 355444333223 5677788888888888764 33456789999999999999999999999999999999999999999
Q ss_pred cChhhhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 006199 613 LPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVYYIV 654 (657)
Q Consensus 613 mP~Av~s~IfA~~Yg~d~elaSsaVllSTLLSLptiil~~~L 654 (657)
+|.++.+.+++.-+++|...+-....+||+++..+++++..+
T Consensus 108 ~Pggv~S~~~t~lAkGnValsV~~tsvStll~~f~tPllv~l 149 (319)
T COG0385 108 CPGGVASNAMTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGL 149 (319)
T ss_pred CCCchhHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999997777666544
No 9
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=98.46 E-value=2.9e-06 Score=83.55 Aligned_cols=107 Identities=20% Similarity=0.228 Sum_probs=84.5
Q ss_pred HHHHHHHHHhhhcccch-hhhhccchHHHHHHHHHHHHHHHHHHHHH-HHhCCChHHHHHHHHHhccChhhhHHHHHHHc
Q 006199 549 GLGMAMFSLGLFMALQP-KIIACGNSVATFSMAVRFLTGPAVMAAAS-IAVGLRGTLLHVAIVQAALPQGIVPFVFAKEY 626 (657)
Q Consensus 549 a~PLALfvIG~sLa~~~-k~~~~~~k~vl~i~~iKLIl~PLLv~ll~-~l~gL~~~~~~V~VL~AAmP~Av~s~IfA~~Y 626 (657)
..-+.||.+|+.+...+ +...++.+.+....+.+++++|++++++. .++++++.....+++++++|.+..+.+++...
T Consensus 3 ~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~~~P~~~~s~~~t~l~ 82 (187)
T PF01758_consen 3 LLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVAACPGGPASNVFTYLA 82 (187)
T ss_dssp HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHS-B-THHHHHHHHT
T ss_pred hhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 34578999999998864 22234456777888999999999999999 88999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006199 627 NVHPAILSTAVIFGMLIALPITLVYYIVL 655 (657)
Q Consensus 627 g~d~elaSsaVllSTLLSLptiil~~~LL 655 (657)
|.|..++.+.+.++|++++.+++++..++
T Consensus 83 ~Gd~~ls~~lt~istll~~~~~P~~~~l~ 111 (187)
T PF01758_consen 83 GGDVALSVSLTLISTLLAPFLMPLLLYLL 111 (187)
T ss_dssp T--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccceeeHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987777776654
No 10
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=97.87 E-value=0.0002 Score=76.48 Aligned_cols=139 Identities=16% Similarity=0.171 Sum_probs=108.1
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHH--HHHHHhHHHHHHHHHhhhcccch-hhhhccchHHHHHHHHHHHHHH
Q 006199 511 NPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSI--SILSDAGLGMAMFSLGLFMALQP-KIIACGNSVATFSMAVRFLTGP 587 (657)
Q Consensus 511 NP~IiAilLGLilsll~~r~gi~LP~~L~~~L--~~Lg~aa~PLALfvIG~sLa~~~-k~~~~~~k~vl~i~~iKLIl~P 587 (657)
|+.++++++++++... ++-|......+ +...+.++.+..|.-|+.|.... +....+|+........-+++.|
T Consensus 1 ~~fl~~l~~ai~la~~-----~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~P 75 (313)
T PF13593_consen 1 QWFLLGLLLAILLAYL-----FPAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFP 75 (313)
T ss_pred CchHHHHHHHHHHHHH-----cCcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 4567788888887776 33343332333 24556668899999999998864 2224578888899999999999
Q ss_pred HHHHHHHHHh--CCChHHHHHHHHHhccChhhhH-HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 006199 588 AVMAAASIAV--GLRGTLLHVAIVQAALPQGIVP-FVFAKEYNVHPAILSTAVIFGMLIALPITLVYYIV 654 (657)
Q Consensus 588 LLv~ll~~l~--gL~~~~~~V~VL~AAmP~Av~s-~IfA~~Yg~d~elaSsaVllSTLLSLptiil~~~L 654 (657)
++++++..++ .++++...-+++.+++|+.+.+ .++.+..|+|...+-....+++++++.+++.|..+
T Consensus 76 ll~~~~~~l~~~~~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l 145 (313)
T PF13593_consen 76 LLGFGLSRLFPAFLPPELALGLLILACLPTTVSSSVVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLL 145 (313)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHH
Confidence 9999998776 3678888889999999998655 67999999999999999999999998777766554
No 11
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=96.88 E-value=0.028 Score=60.97 Aligned_cols=142 Identities=13% Similarity=0.115 Sum_probs=105.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHH--HHHHhHHHHHHHHHhhh---cccc---h-hhhhccc
Q 006199 502 IMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSIS--ILSDAGLGMAMFSLGLF---MALQ---P-KIIACGN 572 (657)
Q Consensus 502 ~~vlkkllrNP~IiAilLGLilsll~~r~gi~LP~~L~~~L~--~Lg~aa~PLALfvIG~s---La~~---~-k~~~~~~ 572 (657)
.+.+.|.+.--+++++++|+.+... .|+ +.+.++ .+++...|++.-.+=+. |... + +....+.
T Consensus 9 l~~~dk~l~~wv~l~i~~Gi~lG~~-------~p~-~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~ 80 (342)
T COG0798 9 LSFLDKYLTLWVFLAIAIGILLGVH-------FPG-LAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDP 80 (342)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhc-------ccc-hhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcc
Confidence 3677777777789999999987654 555 444444 44555555543332221 1111 1 1234457
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-hCCChHHHHHHHHHhccChhhhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHH
Q 006199 573 SVATFSMAVRFLTGPAVMAAASIA-VGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVY 651 (657)
Q Consensus 573 k~vl~i~~iKLIl~PLLv~ll~~l-~gL~~~~~~V~VL~AAmP~Av~s~IfA~~Yg~d~elaSsaVllSTLLSLptiil~ 651 (657)
|.....++.-.++.|++++.++++ ++..++...-+++....|+-.++.++++--+.|.+.+...|.+..++.+.+...|
T Consensus 81 k~L~lsL~~Nwii~P~lm~~la~~fl~~~pey~~GlILlglApC~aMVivw~~La~Gd~~~tlv~Va~n~l~qiv~y~~~ 160 (342)
T COG0798 81 KPLILSLFVNWIIGPLLMFALAWFFLPDEPEYRAGLILLGLAPCIAMVIVWSGLAKGDRELTLVLVAFNSLLQIVLYAPL 160 (342)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhhhHHHHHHHHhhccCcHhhhhHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999875 4666788888999999999999999999999999999999999999997666333
No 12
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=95.21 E-value=0.56 Score=48.28 Aligned_cols=143 Identities=13% Similarity=0.103 Sum_probs=98.7
Q ss_pred HHHHHHHHhhHHHHHHHHHH-HHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhccchHHHHHHH
Q 006199 502 IMVWRKLIRNPNTYSSLIGL-VWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMA 580 (657)
Q Consensus 502 ~~vlkkllrNP~IiAilLGL-ilsll~~r~gi~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~k~~~~~~k~vl~i~~ 580 (657)
.+=+|+.+.||+++++++=+ ++.++ |++..+... .-+++... ..-+-.+++.-|.++.+..+++++.+...+.
T Consensus 12 ~~r~~~~~l~P~l~a~~~ii~~L~~~----~i~y~~Y~~-gg~~l~~l-LgPatVALAvPLY~~~~~l~~~~~~il~~~~ 85 (215)
T PF04172_consen 12 YKRFKSPFLNPLLIAIVLIIAFLLLT----GIPYEDYMQ-GGDILSFL-LGPATVALAVPLYRQRRLLKKNWIPILVGVL 85 (215)
T ss_pred HHHcCCCcccHHHHHHHHHHHHHHHH----CCCHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667799999988744 44555 666555443 34555333 3345788888898876666778888888888
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHH-hccChhhhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 006199 581 VRFLTGPAVMAAASIAVGLRGTLLHVAIVQ-AALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVYYI 653 (657)
Q Consensus 581 iKLIl~PLLv~ll~~l~gL~~~~~~V~VL~-AAmP~Av~s~IfA~~Yg~d~elaSsaVllSTLLSLptiil~~~ 653 (657)
.=-++.-...+.+++++|++++....+.-= ...|. +.-++++.|.++.+++..++++=++...+-..++-
T Consensus 86 ~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSVTtpi---Ai~is~~iGG~~sLta~~VvitGi~Ga~~g~~llk 156 (215)
T PF04172_consen 86 VGSLVSIFSAVLLARLLGLSPEIILSLAPKSVTTPI---AIEISEQIGGIPSLTAVFVVITGILGAVLGPPLLK 156 (215)
T ss_pred HHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHhhHHH---HHHHHHHhCChHHHHHHHHHHHhhHHHHhHHHHHh
Confidence 888888888888889999998765543332 22333 33458999999999999999998877544444433
No 13
>PRK10711 hypothetical protein; Provisional
Probab=94.99 E-value=0.69 Score=48.12 Aligned_cols=140 Identities=14% Similarity=0.083 Sum_probs=96.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhccchHHHHHHHHHHHH
Q 006199 506 RKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLT 585 (657)
Q Consensus 506 kkllrNP~IiAilLGLilsll~~r~gi~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~k~~~~~~k~vl~i~~iKLIl 585 (657)
+..+.||+++++++-+++-.. .|++-.+. .+--+++...-.| |-.+++.-|.++.+..+++++.+...+++=-++
T Consensus 27 ~~~~l~Pll~s~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~lLgP-AtVALAvPLY~q~~~lk~~~~~I~~~~~vG~~v 101 (231)
T PRK10711 27 KFPLLNPLLVAMVVIIPFLLL---TGIPYEHY-FKGSEVLNDLLQP-AVVALAFPLYEQLHQIRARWKSIISICFIGSVV 101 (231)
T ss_pred CCCcccHHHHHHHHHHHHHHH---hCCCHHHH-HhccHHHHhhhhH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 556779999988776554433 16655544 3333555443333 456777888887666677888888888888888
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHh-ccChhhhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 006199 586 GPAVMAAASIAVGLRGTLLHVAIVQA-ALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVYYI 653 (657)
Q Consensus 586 ~PLLv~ll~~l~gL~~~~~~V~VL~A-AmP~Av~s~IfA~~Yg~d~elaSsaVllSTLLSLptiil~~~ 653 (657)
.-+..+++++++|++++....+.--+ ..|. +.-++++.|.++..++..|+++=++...+-..++-
T Consensus 102 ~i~s~~~l~~~lg~~~~~~~Sl~pkSVTtPI---Am~is~~iGG~~sLta~~ViitGi~Ga~~g~~llk 167 (231)
T PRK10711 102 AMVTGTAVALWMGATPEIAASILPKSVTTPI---AMAVGGSIGGIPAISAVCVIFVGILGAVFGHTLLN 167 (231)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHhhhhhhHHH---HHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999988655443332 2232 34468999999999999999998887554444443
No 14
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=94.61 E-value=2.1 Score=44.66 Aligned_cols=139 Identities=13% Similarity=0.092 Sum_probs=94.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhccchHHHHHHHHHHHH
Q 006199 506 RKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLT 585 (657)
Q Consensus 506 kkllrNP~IiAilLGLilsll~~r~gi~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~k~~~~~~k~vl~i~~iKLIl 585 (657)
|..+.||+++++++-+.+-.. .|++-.+. .+--+++...-. -|-.+++.=|.++.+..+++|+.+...+++=-++
T Consensus 32 ~~~~lnPll~s~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~lLg-PAtVALAvPLY~q~~~lk~~~~~Il~~~~vG~~~ 106 (232)
T PRK04288 32 GFFLFTPLFVAMVLGIAFLKL---TGISYEEY-NIGGDIISFFLE-PATIAFAIPLYKKRDVLKKYWWQILGGIVVGSVC 106 (232)
T ss_pred CCcchhHHHHHHHHHHHHHHH---hCCCHHHH-HhhhHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 445679999988777655443 15554443 333344433322 2456677788887666677888888888888888
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhccChhhh---HHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 006199 586 GPAVMAAASIAVGLRGTLLHVAIVQAALPQGIV---PFVFAKEYNVHPAILSTAVIFGMLIALPITLVYYIV 654 (657)
Q Consensus 586 ~PLLv~ll~~l~gL~~~~~~V~VL~AAmP~Av~---s~IfA~~Yg~d~elaSsaVllSTLLSLptiil~~~L 654 (657)
.-...+.+++++|++++.... -+|=.++ +.-++++.|..+..++..++++=++...+-...+-+
T Consensus 107 ~i~s~~~la~~lgl~~~~~~S-----l~pKSVTtPIAm~is~~iGG~psLtA~~ViitGi~Gai~g~~llk~ 173 (232)
T PRK04288 107 SVLIIYLVAKLIQLDNAVMAS-----MLPQAATTAIALPVSAGIGGIKEITSFAVIFNAVIIYALGAKFLKL 173 (232)
T ss_pred HHHHHHHHHHHHCcCHHHHHH-----HhhHhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888889999999875443 3443333 344699999999999999999988875554444433
No 15
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=94.53 E-value=0.38 Score=50.85 Aligned_cols=137 Identities=8% Similarity=0.039 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhccccChhhhhHHHHHHHHHHhH---HHHHHHhhcC--CcccchHHHHHHHHHHHHH
Q 006199 7 LYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVP---LLSFHFISTN--DPYAMNFRFIAADTLQKII 81 (657)
Q Consensus 7 M~~Il~~ilPIFlLI~LGYla~R~~glfs~e~~~gLnkFV~~~ALP---aLLF~~iA~~--dl~~l~~~filAy~l~~li 81 (657)
+..++....-+++=+.+|.+++|++ ++..+.+.+ .-.++.- ++++-.++.. ++.+..+..+++..+-.++
T Consensus 133 ~~~i~~~~~~v~vPl~lG~~~r~~~----p~~~~~~~~-~~~~s~~~l~liv~~~~~~~~~~i~~~~~~~~~~~~ll~~~ 207 (286)
T TIGR00841 133 YLGIGLSLVAVLIPVSIGMLVKHKL----PQIAKIILK-VGLISVFLLSVIIAVVGGINVENLATIGPLLLLVGILLPLA 207 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHh-CchHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHH
Confidence 3344333445555578898888873 222333333 2222222 2223333222 1212245556666666667
Q ss_pred HHHHHHHHHHHhcCCCcchhhHhHhh-hccCCcceehHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHH
Q 006199 82 MLFVLGIWTNFTKNGSLEWMITIFSL-STLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFL 151 (657)
Q Consensus 82 vfll~~l~ar~~~~~~l~~~aav~~L-ssfsNtgfmGiPLl~alfG~~a~~~lalivvv~~ill~tl~l~L 151 (657)
.|+++++++|..+.+..+. .+ .++ ++.-|++ +|++++...|+++...+.+.+.+.++++-..++.+.
T Consensus 208 ~~~~g~~~a~~~~l~~~~~-~t-~~~~~g~qN~~-lal~la~~~f~~~~a~~~~~~~v~~~~~~~~~a~~~ 275 (286)
T TIGR00841 208 GFLLGYLLAKLAGLPWARC-RT-ISIEVGMQNSQ-LCSTIAQLSFSPEVAVPSAIFPLIYALFQLAFALLF 275 (286)
T ss_pred HHHHHHHHHHHhCCCHhhh-ee-eeeeeecccHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777776543321121 22 244 5678998 999999999998877777777777777666555543
No 16
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=94.52 E-value=1.4 Score=45.88 Aligned_cols=139 Identities=14% Similarity=0.118 Sum_probs=93.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhccchHHHHHHHHHHHH
Q 006199 506 RKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLT 585 (657)
Q Consensus 506 kkllrNP~IiAilLGLilsll~~r~gi~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~k~~~~~~k~vl~i~~iKLIl 585 (657)
+..+.||+++++++-+.+-.. .|++-.+. .+--+++. .-..-|-.+++.=|.++.+..+++++.+...+++=-++
T Consensus 26 ~~~~lnPvl~~~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~-~lLgPAtVALAvPLY~~~~~lk~~~~~Il~~~~~G~~~ 100 (226)
T TIGR00659 26 KRPYLNPLLLTPLVLVGILLL---VGIPYESY-MLGGGVIN-DLLGPAVVALAIPLYKQLPQIKKYWKEIILNVAVGSVI 100 (226)
T ss_pred CCccccHHHHHHHHHHHHHHH---hCCCHHHH-HHhhHHHH-HhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 666889999998876655433 15554444 33444443 23334566777788887666677788888887777777
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHh-ccChhhhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 006199 586 GPAVMAAASIAVGLRGTLLHVAIVQA-ALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVYY 652 (657)
Q Consensus 586 ~PLLv~ll~~l~gL~~~~~~V~VL~A-AmP~Av~s~IfA~~Yg~d~elaSsaVllSTLLSLptiil~~ 652 (657)
.-...+++++++|++++....+.--+ ..| .+.-.+++.|.++..++..++++=++...+-...+
T Consensus 101 ~~~s~~~la~~lg~~~~i~~Sl~pkSvTtp---iAm~vs~~iGG~~sLta~~vvitGi~Ga~~g~~ll 165 (226)
T TIGR00659 101 AIISGTLLALLLGLGPEIIASLLPKSVTTP---IAMHVSEMIGGIPAVTAVFVILTGLLGTVFGPMVL 165 (226)
T ss_pred HHHHHHHHHHHHCcCHHHHHHhhhHHhhHH---HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888899999987554332221 122 23346999999999999999999887754444333
No 17
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=94.37 E-value=0.77 Score=49.47 Aligned_cols=143 Identities=15% Similarity=0.111 Sum_probs=87.1
Q ss_pred HhhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhccchHHHHHHHHHHHHHHH
Q 006199 509 IRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPA 588 (657)
Q Consensus 509 lrNP~IiAilLGLilsll~~r~gi~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~k~~~~~~k~vl~i~~iKLIl~PL 588 (657)
--.+.++|+++|++++-. -+..|+.+..-+++-.+....++...+|..+.... ....+++.+.... +=.++.=+
T Consensus 25 ~l~~~~~AillG~~i~n~----~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~-i~~~G~~~~~~~~-~~v~~~~~ 98 (305)
T PF03601_consen 25 GLGALLIAILLGMLIGNL----FFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSD-ILALGWKGLLIII-IVVILTFL 98 (305)
T ss_pred CccHHHHHHHHHHHHhhh----ccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHH-HHHhCccHHHHHH-HHHHHHHH
Confidence 456889999999999831 25778999999999999999999999999999863 3334443333333 33333334
Q ss_pred HHHHHH-HHhCCChHHHHHHHHHhccChhhhHHHHHHHcCCChhHHHHHHHHHHHH---HHHHHHHHHHHhcC
Q 006199 589 VMAAAS-IAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLI---ALPITLVYYIVLGL 657 (657)
Q Consensus 589 Lv~ll~-~l~gL~~~~~~V~VL~AAmP~Av~s~IfA~~Yg~d~elaSsaVllSTLL---SLptiil~~~LLgl 657 (657)
+.+.+. .++++|......+-.-.+.-=+....-.+.--+.+++..+.++..-+++ ++.+.++.+-.+++
T Consensus 99 ~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~~P~l~~~l~l 171 (305)
T PF03601_consen 99 LTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFLYPLLGHALGL 171 (305)
T ss_pred HHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHHHHHHHHHhCC
Confidence 445555 8899987654333222222223333333444455555555545444444 35555555555543
No 18
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=94.23 E-value=1.3 Score=45.99 Aligned_cols=140 Identities=14% Similarity=0.091 Sum_probs=96.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhccchHHHHHHHH
Q 006199 502 IMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAV 581 (657)
Q Consensus 502 ~~vlkkllrNP~IiAilLGLilsll~~r~gi~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~k~~~~~~k~vl~i~~i 581 (657)
.+=.|+.+.||.++++++.+.+-.. .|++-.+. ..--+++...-.| |-.++..=|..+.+..+++|+.+...+++
T Consensus 25 ~~r~~~~~l~PlLv~~~~li~~L~~---~~i~Y~~Y-~~g~~~i~~lLgP-AtVAlAvPLYkq~~~ik~~w~~I~~g~~v 99 (230)
T COG1346 25 YKRTKSPFLNPLLVATVLLIAFLLL---FGISYEDY-MKGGQWINFLLGP-ATVALAVPLYKQRHLIKRHWKPILAGVLV 99 (230)
T ss_pred HHhcCCcccchHHHHHHHHHHHHHH---cCCCHHHH-hcccHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345567889999999888776554 14544332 2223344333444 66677777887765667889988888888
Q ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHhccChhhhH---HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHH
Q 006199 582 RFLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVP---FVFAKEYNVHPAILSTAVIFGMLIALPITLVY 651 (657)
Q Consensus 582 KLIl~PLLv~ll~~l~gL~~~~~~V~VL~AAmP~Av~s---~IfA~~Yg~d~elaSsaVllSTLLSLptiil~ 651 (657)
=-++.=...+++.+++|++++... +-+|-+++. .-.+++.|.-++.++..|+++=++.-.+-...
T Consensus 100 Gs~~ai~s~~llak~~g~~~~~~~-----Sl~PkSvTTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~l 167 (230)
T COG1346 100 GSVVAIISGVLLAKLFGLSPELIL-----SLLPKSVTTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLL 167 (230)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHH-----HhcccccccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 777777888888899999998654 445554433 34689999999999999999888774444333
No 19
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=92.05 E-value=4.9 Score=46.98 Aligned_cols=135 Identities=14% Similarity=0.105 Sum_probs=89.0
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhccchHHHHHHHHHHHHHHHH
Q 006199 510 RNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAV 589 (657)
Q Consensus 510 rNP~IiAilLGLilsll~~r~gi~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~k~~~~~~k~vl~i~~iKLIl~PLL 589 (657)
.++.+-|.++|++++-. +.-..+...++.+.+...|+-.+.+|+.+... .....+..++..++..+++-++.
T Consensus 237 ls~~LGAFlaGl~l~~s------~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~--~l~~~~~~il~~~~~~l~~K~~~ 308 (601)
T PRK03659 237 LSMALGTFIAGVLLAES------EYRHELEIAIEPFKGLLLGLFFISVGMALNLG--VLYTHLLWVLISVVVLVAVKGLV 308 (601)
T ss_pred ccHHHHHHHHHHHhcCC------chHHHHHHHHHHHHHHHHHHHHHHHhhhccHH--HHHHhHHHHHHHHHHHHHHHHHH
Confidence 57778888888887633 33456677777778899999999999999874 22334555555666677777888
Q ss_pred HHHHHHHhCCChHHH-HHH-HHHhccChhhhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 006199 590 MAAASIAVGLRGTLL-HVA-IVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVYY 652 (657)
Q Consensus 590 v~ll~~l~gL~~~~~-~V~-VL~AAmP~Av~s~IfA~~Yg~d~elaSsaVllSTLLSLptiil~~ 652 (657)
+++.+.+++++.... .+. .+...-..+...+-++.++|.=.+...+.++..+++|+.+.++.+
T Consensus 309 ~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~ 373 (601)
T PRK03659 309 LYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLM 373 (601)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888875432 222 222333444555555777886666666666777777755444433
No 20
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=91.52 E-value=2.3 Score=46.09 Aligned_cols=87 Identities=16% Similarity=0.218 Sum_probs=63.2
Q ss_pred HhHHHHHHHHHhhhcccchhhhhccchHHHHHHHHHHHHHHHHHHHHHHHhCCChH------HHHHHHHHhccCh--hhh
Q 006199 547 DAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMAAASIAVGLRGT------LLHVAIVQAALPQ--GIV 618 (657)
Q Consensus 547 ~aa~PLALfvIG~sLa~~~k~~~~~~k~vl~i~~iKLIl~PLLv~ll~~l~gL~~~------~~~V~VL~AAmP~--Av~ 618 (657)
..-..+-+|+.|.++..+. ...-.|+-...++.|+++.-++.+++..++|.++. -...+.+.+|+-. +..
T Consensus 48 ~~iig~~l~~~Ga~I~~k~--~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggL 125 (314)
T PF03812_consen 48 NPIIGVFLFCMGAQIDLKS--AGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGL 125 (314)
T ss_pred HHHHHHHHHHhccccchhh--hhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHH
Confidence 3445567889999999853 34456778888999999999999999999988763 3445556666654 445
Q ss_pred HHHHHHHcCCChhHHHH
Q 006199 619 PFVFAKEYNVHPAILST 635 (657)
Q Consensus 619 s~IfA~~Yg~d~elaSs 635 (657)
..-+..+||-+.|..+.
T Consensus 126 Y~aL~~~yGd~~D~gA~ 142 (314)
T PF03812_consen 126 YLALMGQYGDEEDVGAF 142 (314)
T ss_pred HHHHHHHhCCHHHhHHH
Confidence 55568899988776543
No 21
>COG2855 Predicted membrane protein [Function unknown]
Probab=91.16 E-value=1.8 Score=47.36 Aligned_cols=136 Identities=18% Similarity=0.238 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhccchHHHHHHHHHHHHHHHHHH
Q 006199 512 PNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMA 591 (657)
Q Consensus 512 P~IiAilLGLilsll~~r~gi~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~k~~~~~~k~vl~i~~iKLIl~PLLv~ 591 (657)
++++|+++|+++... .+.|+-...-+++-.+.-..++...+|..|.... ...-+.. .......-+...-++++
T Consensus 39 al~lAIllGi~l~~l-----~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~-i~~~G~~-~v~~~~~~l~~t~~~~~ 111 (334)
T COG2855 39 ALTLAILLGILLGIL-----PQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSD-IADVGGS-GVLIIAITLSSTFLFAY 111 (334)
T ss_pred HHHHHHHHHHHHhcc-----ccchhhhccchhhhHHHHHHHHHHHHcceeeHHH-HHHcCcc-HHHHHHHHHHHHHHHHH
Confidence 899999999999854 4567778888888999999999999999999864 2222322 33333444444445666
Q ss_pred HHHHHhCCChHHHHHHHHHhccCh--hhhHHHHHHHcCCChhHHHHHHHHHHHHH---HHHHHHHHHHhc
Q 006199 592 AASIAVGLRGTLLHVAIVQAALPQ--GIVPFVFAKEYNVHPAILSTAVIFGMLIA---LPITLVYYIVLG 656 (657)
Q Consensus 592 ll~~l~gL~~~~~~V~VL~AAmP~--Av~s~IfA~~Yg~d~elaSsaVllSTLLS---Lptiil~~~LLg 656 (657)
.+..++++|..... .+-++.-. +......+---+.+++..+.+|..-++++ +.+.++.|-+++
T Consensus 112 ~lg~~lgld~~~a~--Lia~GssICGasAiaA~~pvika~~~eva~aIa~V~lfgtia~llyP~l~~~l~ 179 (334)
T COG2855 112 FLGKLLGLDKKLAL--LIAAGSSICGASAIAATAPVIKAEEEEVAVAIAVVVLFGTLAMLLYPLLYPLLG 179 (334)
T ss_pred HHHHHhCCCHHHHH--HHHccchhhHHHHHHHhCCcCCCCccccceehhhHHHHHHHHHHHHHHHHHHhC
Confidence 66678899865432 22222222 22223333345666777777776666655 445555566555
No 22
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=90.87 E-value=7.9 Score=43.03 Aligned_cols=136 Identities=14% Similarity=0.132 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHHhHhhhccccChhhhhHHHHHHHHHHhHHHHHHHhhcCCcccc---hHHHHHHHHHHHHHHHHHHH
Q 006199 11 LTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAM---NFRFIAADTLQKIIMLFVLG 87 (657)
Q Consensus 11 l~~ilPIFlLI~LGYla~R~~glfs~e~~~gLnkFV~~~ALPaLLF~~iA~~dl~~l---~~~filAy~l~~livfll~~ 87 (657)
+..+-|+.+.+++|.++.-. |+++......+-.+|..+.+|+.++-.+.+.|+.++ -++.+++|+++++.+.+...
T Consensus 22 f~~l~~~vl~~~~~~~lsnl-gli~~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g~viG~~ 100 (378)
T PF05684_consen 22 FKYLPGAVLCYLLGMLLSNL-GLIDSPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAVGTVIGAV 100 (378)
T ss_pred HhhcCHHHHHHHHHHHHHHC-CCcCCCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 44556888899999999998 999555556788999999999999999999999987 58899999998876655332
Q ss_pred HHHHHhc-C-CCcchhhHhHhhh-cc----CCcceehHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006199 88 IWTNFTK-N-GSLEWMITIFSLS-TL----PNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEY 154 (657)
Q Consensus 88 l~ar~~~-~-~~l~~~aav~~Ls-sf----sNtgfmGiPLl~alfG~~a~~~lalivvv~~ill~tl~l~L~E~ 154 (657)
+.....+ . +...|. ..-.++ ++ .|..-++ ..+|-.. ..++..++.|+++......+++-.
T Consensus 101 va~~l~~~~l~~~~wk-~ag~l~gsyiGGs~N~~Av~-----~al~~~~-~~~~a~~aaDnv~~~~~~~~l~~l 167 (378)
T PF05684_consen 101 VAFLLFGGFLGPEGWK-IAGMLAGSYIGGSVNFVAVA-----EALGVSD-SLFAAALAADNVVMALWFAFLLAL 167 (378)
T ss_pred HHHHHHhhcccchHHH-HHHHHHhcccCchhHHHHHH-----HHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2122121 1 122333 222232 22 3543333 3455543 566777788888765555555444
No 23
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=90.75 E-value=8.2 Score=45.44 Aligned_cols=133 Identities=12% Similarity=0.089 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhccchHHHHHHHHHHHHHHHHH
Q 006199 511 NPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVM 590 (657)
Q Consensus 511 NP~IiAilLGLilsll~~r~gi~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~k~~~~~~k~vl~i~~iKLIl~PLLv 590 (657)
++.+=|.++|++++-. +.-..+...++-+.+.-.|+=.+.+|+.+.... ....+..++..++..+++-++.+
T Consensus 241 s~~lGAFlAGl~l~~~------~~~~~le~~i~pf~~lll~lFFi~vG~~id~~~--l~~~~~~il~~~~~~~~~K~~~~ 312 (621)
T PRK03562 241 SMALGAFLAGVLLASS------EYRHALESDIEPFKGLLLGLFFIAVGMSIDFGT--LLENPLRILILLLGFLAIKIAML 312 (621)
T ss_pred cHHHHHHHHHHHhcCC------ccHHHHHHHHHHHHHHHHHHHHHHhhhhccHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777766533 333567777777778888999999999998742 22334445555566777778888
Q ss_pred HHHHHHhCCChHHH-HHH-HHHhccChhhhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHH
Q 006199 591 AAASIAVGLRGTLL-HVA-IVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVY 651 (657)
Q Consensus 591 ~ll~~l~gL~~~~~-~V~-VL~AAmP~Av~s~IfA~~Yg~d~elaSsaVllSTLLSLptiil~ 651 (657)
++.+++++++.... .+. .+...-..+...+-++.++|.=.+...+.+++.+++|+.+.+++
T Consensus 313 ~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~l 375 (621)
T PRK03562 313 WLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPLL 375 (621)
T ss_pred HHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888874432 222 22223444555556677777555555555666667775444433
No 24
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=87.10 E-value=3.8 Score=44.50 Aligned_cols=82 Identities=20% Similarity=0.254 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhccchHHHHHHHHHHHHHHHHHH
Q 006199 512 PNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMA 591 (657)
Q Consensus 512 P~IiAilLGLilsll~~r~gi~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~k~~~~~~k~vl~i~~iKLIl~PLLv~ 591 (657)
..++++++|+++.-+ .-.+|+.+...+.+ .+|+.-|.+|..|.... ....++.-+...+++=.+-. .+.+
T Consensus 168 ~lilpILiGmilGNl----d~~~~~~l~~Gi~f----~I~f~~f~LG~~lnl~~-I~~~G~~GIlL~v~vv~~t~-~~~~ 237 (312)
T PRK12460 168 AALLPLVLGMILGNL----DPDMRKFLTKGGPL----LIPFFAFALGAGINLSM-LLQAGLAGILLGVLVTIVTG-FFNI 237 (312)
T ss_pred HHHHHHHHHHHHhcc----chhhHHHHhccceE----eHHHHHHHhcCCeeHHH-HHHhChHHHHHHHHHHHHHH-HHHH
Confidence 367888888887644 33467777776665 88999999999999874 34445554444443333333 3444
Q ss_pred HHHHHhCCChHH
Q 006199 592 AASIAVGLRGTL 603 (657)
Q Consensus 592 ll~~l~gL~~~~ 603 (657)
.+.++++.++..
T Consensus 238 ~i~rllg~~~~~ 249 (312)
T PRK12460 238 FADRLVGGTGIA 249 (312)
T ss_pred HHHHHhCCChhH
Confidence 444777887654
No 25
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=86.99 E-value=5.8 Score=43.50 Aligned_cols=90 Identities=9% Similarity=0.000 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhccchHHHHHHHHHHHHHHHH
Q 006199 510 RNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAV 589 (657)
Q Consensus 510 rNP~IiAilLGLilsll~~r~gi~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~k~~~~~~k~vl~i~~iKLIl~PLL 589 (657)
-+++++|+++|++++-. ...+.|+....-+++-++.-.=++...+|..+.... ...-+++.+...+. =++..=++
T Consensus 31 l~~~~~AillG~~l~n~---~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~-i~~~G~~~l~~~~~-~v~~~~~~ 105 (335)
T TIGR00698 31 LSALFLAILLGMVAGNT---IYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPY-IADVGPNEIVADTL-ILTSTFFL 105 (335)
T ss_pred CcHHHHHHHHHHHHhcc---ccccchhhccchHHHHHHHHHHHHHHHHCccccHHH-HHHhhHHHHHHHHH-HHHHHHHH
Confidence 56778999999988643 012466777778888889999999999999999863 22333332222222 22222222
Q ss_pred HHHHH-HHhCCChHHH
Q 006199 590 MAAAS-IAVGLRGTLL 604 (657)
Q Consensus 590 v~ll~-~l~gL~~~~~ 604 (657)
.+.+. .++++|+...
T Consensus 106 ~~~~g~k~l~l~~~~~ 121 (335)
T TIGR00698 106 TVFLGSSRLKLDKQMS 121 (335)
T ss_pred HHHHHHHHhCCChhHH
Confidence 23333 5788886643
No 26
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=86.68 E-value=18 Score=41.71 Aligned_cols=135 Identities=12% Similarity=0.064 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhccchHHHHHHHHHHHHHHHH
Q 006199 510 RNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAV 589 (657)
Q Consensus 510 rNP~IiAilLGLilsll~~r~gi~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~k~~~~~~k~vl~i~~iKLIl~PLL 589 (657)
-++.+-|.++|++++-. +....+.+...-+...-.|+-.+.+|+.+.... . ...+..++..+++.++.-++.
T Consensus 248 ls~~lGAflaGl~l~~~------~~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~-l-~~~~~~~~~~~~~~~v~K~~~ 319 (558)
T PRK10669 248 VSFALGAFFAGMVLNES------ELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMI-L-IQQPLAVLATLAIIVFGKSLA 319 (558)
T ss_pred ccHHHHHHHHHHHHhCC------hhHHHHHHHHhhHHHHHHHHHHHHhhhhcCHHH-H-HHHHHHHHHHHHHHHHHHHHH
Confidence 36777888888887633 233334433334567789999999999988742 1 122333444555566666777
Q ss_pred HHHHHHHhCCChHH-HHHHHHH-hccChhhhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 006199 590 MAAASIAVGLRGTL-LHVAIVQ-AALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVYY 652 (657)
Q Consensus 590 v~ll~~l~gL~~~~-~~V~VL~-AAmP~Av~s~IfA~~Yg~d~elaSsaVllSTLLSLptiil~~ 652 (657)
.++.+..++.+... ..+.+.+ .--..+...+.++.++|.=.+...+.+++.++++..+.++++
T Consensus 320 ~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~ 384 (558)
T PRK10669 320 AFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLF 384 (558)
T ss_pred HHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777766432 2222222 224556666667777887667777778888888865555544
No 27
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=86.47 E-value=13 Score=45.31 Aligned_cols=92 Identities=15% Similarity=0.126 Sum_probs=58.8
Q ss_pred HHHH-HHHhhHHHHHHHHHHHHHHHhhcCCCCCcHHH-----HHHHHHHHHhHHHHHHHHHhhhcccchhhhhccchHHH
Q 006199 503 MVWR-KLIRNPNTYSSLIGLVWSLIAFRWHVSMPKII-----EKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVAT 576 (657)
Q Consensus 503 ~vlk-kllrNP~IiAilLGLilsll~~r~gi~LP~~L-----~~~L~~Lg~aa~PLALfvIG~sLa~~~k~~~~~~k~vl 576 (657)
..++ ++-..-+++.+++|+++... ++.+..+. +..+-.+...++.+.||..|+.|... ..+..|+.++
T Consensus 30 ~~lkeRl~Ls~~~v~Ll~GiilGP~----~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~--~Lrr~wrsV~ 103 (810)
T TIGR00844 30 LFVKEKLYIGESMVASIFGLIVGPH----CLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRK--YMLKHWVSVT 103 (810)
T ss_pred HHHHhhcCCcHHHHHHHHHHHhhhh----hhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHH--HHHHhHHHHH
Confidence 3344 44446678899999998776 44333333 22233388899999999999999875 3455677766
Q ss_pred HHHHHHHHHHHHHHHHHHHH--hCCC
Q 006199 577 FSMAVRFLTGPAVMAAASIA--VGLR 600 (657)
Q Consensus 577 ~i~~iKLIl~PLLv~ll~~l--~gL~ 600 (657)
.++++=+.+.=+++.+++++ +|++
T Consensus 104 rLl~~~M~lT~livAL~a~~Li~GL~ 129 (810)
T TIGR00844 104 MLLVPVMTSGWLVIALFVWILVPGLN 129 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 66655555555555554443 3665
No 28
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=85.81 E-value=38 Score=35.09 Aligned_cols=94 Identities=17% Similarity=0.211 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhhHHHHHH-HHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhccchHHHHH
Q 006199 500 ILIMVWRKLIRNPNTYSS-LIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFS 578 (657)
Q Consensus 500 il~~vlkkllrNP~IiAi-lLGLilsll~~r~gi~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~k~~~~~~k~vl~i 578 (657)
+...+.|+ ++.|.+.+. ++|+++.-..+ |+--+. +.++.++..+..+-||..|+.+... ..++..+.....
T Consensus 6 ~~~~l~~~-l~lP~~v~~il~GillGp~~l--g~i~~~---~~~~~l~~igl~~llF~~Gl~~d~~--~l~~~~~~~~~~ 77 (273)
T TIGR00932 6 LAVPLSRR-LGIPSVLGYLLAGVLIGPSGL--GLISNV---EGVNHLAEFGVILLMFLIGLELDLE--RLWKLRKAAFGV 77 (273)
T ss_pred HHHHHHHH-hCCCHHHHHHHHHHHhCcccc--cCCCCh---HHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHH
Confidence 34566666 567766665 55777653311 321122 4688899999999999999999875 234445566665
Q ss_pred HHHHHHHHH-HHHH-HHHHHhCCChH
Q 006199 579 MAVRFLTGP-AVMA-AASIAVGLRGT 602 (657)
Q Consensus 579 ~~iKLIl~P-LLv~-ll~~l~gL~~~ 602 (657)
...-.+ .| +++. .+.++++.+..
T Consensus 78 ~~~~~~-~~~~~~~~~~~~~~~~~~~ 102 (273)
T TIGR00932 78 GVLQVL-VPGVLLGLLLGHLLGLALG 102 (273)
T ss_pred HHHHHH-HHHHHHHHHHHHHHCCCHH
Confidence 555554 45 3332 24456776543
No 29
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=84.24 E-value=1.3 Score=48.97 Aligned_cols=108 Identities=18% Similarity=0.201 Sum_probs=76.0
Q ss_pred hHHHHHHHHHhhhcccchh--hhhccchHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHH-hccChhhhHHHHHH
Q 006199 548 AGLGMAMFSLGLFMALQPK--IIACGNSVATFSMAVRFLTGPAVMAAASIAVGLRGTLLHVAIVQ-AALPQGIVPFVFAK 624 (657)
Q Consensus 548 aa~PLALfvIG~sLa~~~k--~~~~~~k~vl~i~~iKLIl~PLLv~ll~~l~gL~~~~~~V~VL~-AAmP~Av~s~IfA~ 624 (657)
...-.-++++|+.+..... ..++. .......+.+++++|+..+.+...+.++..+....++. ...|.+...++.+.
T Consensus 117 ~gl~~~~ls~g~~~~~~~~~~~~~rP-~~~~lG~v~q~~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~ 195 (371)
T KOG2718|consen 117 PGLLSNMLSFGIKLDMDLFAGMIKRP-TPLALGFVPQYLIMPLLGFLLSKVLLLPAALAAGLLLVTCVSPGGGGNYLTSK 195 (371)
T ss_pred cHHHHHHHHHhcCccHHHHhhHhhCC-cceeehHHHHHHHHHHHHHhhhhHhhCCccccceeEEEEeccCCcchhhheee
Confidence 4455667888888776521 11222 33445555699999999999888888887774444444 44566777777777
Q ss_pred HcCCChhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006199 625 EYNVHPAILSTAVIFGMLIALPITLVYYIVLG 656 (657)
Q Consensus 625 ~Yg~d~elaSsaVllSTLLSLptiil~~~LLg 656 (657)
.-+.|...+..+..++|+.++.+++.|-.+++
T Consensus 196 ~~~g~v~lsilmT~~stv~avi~~pl~s~~l~ 227 (371)
T KOG2718|consen 196 RLPGDVTLSILMTTISTVLAVILTPLLSILLG 227 (371)
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 76888888888888889988888887766654
No 30
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=80.50 E-value=22 Score=38.47 Aligned_cols=112 Identities=12% Similarity=0.163 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhHhhhccccChhhhhHHHHHHHHHHhHHHHHHHhhcC---C-cccchHHHHHHHHHHHHHHHH----H
Q 006199 14 VVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTN---D-PYAMNFRFIAADTLQKIIMLF----V 85 (657)
Q Consensus 14 ilPIFlLI~LGYla~R~~glfs~e~~~gLnkFV~~~ALPaLLF~~iA~~---d-l~~l~~~filAy~l~~livfl----l 85 (657)
.+-+++=..+|-+++|+++-..+. .+..-+.+-..++-.+++.++++. + ..++++.-++......+..++ +
T Consensus 164 ~~~vllP~~~Gq~~r~~~~~~~~~-~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 242 (313)
T PF13593_consen 164 VLTVLLPLVLGQLLRRWVPKWVAR-HKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLVVLVL 242 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 334444456788888774433233 344556667777888888777664 2 223433322222222221111 1
Q ss_pred HHHHHHHhcCCCcchhhHhHhhhccCCcceehHHHHHHHhhcc
Q 006199 86 LGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGEY 128 (657)
Q Consensus 86 ~~l~ar~~~~~~l~~~aav~~LssfsNtgfmGiPLl~alfG~~ 128 (657)
.++..|..+-.+.| .....+|+--.+.-+|+|++..+|++.
T Consensus 243 ~~~~~r~~~~~~~d--~iA~~F~gs~Ksl~~gvpl~~~lf~~~ 283 (313)
T PF13593_consen 243 GWLAARLLGFSRPD--RIAVLFCGSQKSLALGVPLASILFPGH 283 (313)
T ss_pred HHHHHhhcCCChhh--EEEEEEEcCcCcchhHHHHHHHHcccc
Confidence 23334433222123 222234655799999999999999875
No 31
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=74.52 E-value=67 Score=37.98 Aligned_cols=116 Identities=14% Similarity=0.145 Sum_probs=67.1
Q ss_pred HHHHHHHHhhHHHHHHHH-HHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhccchHHHHHHH
Q 006199 502 IMVWRKLIRNPNTYSSLI-GLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMA 580 (657)
Q Consensus 502 ~~vlkkllrNP~IiAilL-GLilsll~~r~gi~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~k~~~~~~k~vl~i~~ 580 (657)
..+.|+ ++.|.+++.++ |+++.-.++ |+- +. .+.+..++..++.+-||.+|+.+.... .+...+.++....
T Consensus 21 ~~l~~r-l~lp~vlgyilaGillGP~~l--g~i-~~--~~~i~~laelGvv~LlF~iGLEl~~~~--l~~~~~~~~~~g~ 92 (621)
T PRK03562 21 VPIAVR-LGLGSVLGYLIAGCIIGPWGL--RLV-TD--VESILHFAEFGVVLMLFVIGLELDPQR--LWKLRRSIFGGGA 92 (621)
T ss_pred HHHHHH-hCCChHHHHHHHHHHhCcccc--cCC-CC--HHHHHHHHHHHHHHHHHHHHhCcCHHH--HHHHHHHHHHHHH
Confidence 344554 68888888755 666543311 221 21 235778999999999999999998752 2333445555555
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHHH-HHHHHhccChhhhHHHHHHH
Q 006199 581 VRFLTGPAVMAAASIAVGLRGTLLH-VAIVQAALPQGIVPFVFAKE 625 (657)
Q Consensus 581 iKLIl~PLLv~ll~~l~gL~~~~~~-V~VL~AAmP~Av~s~IfA~~ 625 (657)
.-+++.-++.+.+++++|++..... +.+.++...+++..-++.++
T Consensus 93 ~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SStaiv~~~L~e~ 138 (621)
T PRK03562 93 LQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSSTAIAMQAMNER 138 (621)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555544455555667777644322 22333334445555555544
No 32
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=73.85 E-value=90 Score=30.26 Aligned_cols=122 Identities=15% Similarity=0.130 Sum_probs=63.3
Q ss_pred HHhhH--HHHH-HHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccch-hhhhccchHHHHHHHHHH
Q 006199 508 LIRNP--NTYS-SLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQP-KIIACGNSVATFSMAVRF 583 (657)
Q Consensus 508 llrNP--~IiA-ilLGLilsll~~r~gi~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~-k~~~~~~k~vl~i~~iKL 583 (657)
.++-| .+++ ++++.++++.+ ...+++|..+....+.+-+ ..+|..+.... +...+.+...+..++.=+
T Consensus 16 ~l~~Pa~~llG~mi~~~~~~~~~-~~~~~~P~~~~~~~qviiG-------~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l 87 (156)
T TIGR03082 16 LLGLPAAWLLGPLLAGAVLSLAG-GLEITLPPWLLALAQVVIG-------ILIGSRFTREVLAELKRLWPAALLSTVLLL 87 (156)
T ss_pred HHCCCcHHHHHHHHHHHHHHhcC-CccCCCCHHHHHHHHHHHH-------HHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555 3443 34445555541 1135678876665554422 23455554431 111112222233333333
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHhccChhhhH-HHHHHHcCCChhHHHHHHHHHH
Q 006199 584 LTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVP-FVFAKEYNVHPAILSTAVIFGM 641 (657)
Q Consensus 584 Il~PLLv~ll~~l~gL~~~~~~V~VL~AAmP~Av~s-~IfA~~Yg~d~elaSsaVllST 641 (657)
++.=+..+.+.++.++|... .+.+.+|-|... .++|+++|.|+..++..=.+=.
T Consensus 88 ~~~~~~~~~l~~~~~~~~~t----a~La~~PGGl~~m~~~A~~~gad~~~V~~~q~~Rl 142 (156)
T TIGR03082 88 ALSALLAWLLARLTGVDPLT----AFLATSPGGASEMAALAAELGADVAFVAAMQTLRL 142 (156)
T ss_pred HHHHHHHHHHHHHHCCCHHH----HHHHhCCchHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 33334444455666776543 457789986655 4579999999888776554433
No 33
>PRK05326 potassium/proton antiporter; Reviewed
Probab=72.97 E-value=58 Score=37.75 Aligned_cols=94 Identities=14% Similarity=0.074 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhhHHHHHH-HHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhccchHHHH
Q 006199 500 ILIMVWRKLIRNPNTYSS-LIGLVWSLIAFRWH-VSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATF 577 (657)
Q Consensus 500 il~~vlkkllrNP~IiAi-lLGLilsll~~r~g-i~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~k~~~~~~k~vl~ 577 (657)
++..+.++ ++-|.+++. ++|+++.-.++ | +... -.+..+.++..+.++.||..|+.+... ..+..++.++.
T Consensus 20 ~~~~l~~r-~~~P~ll~~il~GillGp~~l--g~i~~~--~~~~~~~i~~l~L~~iLF~~Gl~~~~~--~l~~~~~~~~~ 92 (562)
T PRK05326 20 LASRLSSR-LGIPSLLLFLAIGMLAGEDGL--GGIQFD--NYPLAYLVGNLALAVILFDGGLRTRWS--SFRPALGPALS 92 (562)
T ss_pred HHHHHHHH-cCCcHHHHHHHHHHHhCcccc--CCcccC--cHHHHHHHHHHHHHHHHHcCccCCCHH--HHHHHHHHHHH
Confidence 33445555 466766654 56776654411 2 2222 235678899999999999999998875 23344555555
Q ss_pred HHHHHHHHHHHHH--HHHHHHhCCCh
Q 006199 578 SMAVRFLTGPAVM--AAASIAVGLRG 601 (657)
Q Consensus 578 i~~iKLIl~PLLv--~ll~~l~gL~~ 601 (657)
...+-.++ |.+. +...++++++.
T Consensus 93 la~~gv~~-t~~~~g~~~~~l~g~~~ 117 (562)
T PRK05326 93 LATLGVLI-TAGLTGLFAHWLLGLDW 117 (562)
T ss_pred HHHHHHHH-HHHHHHHHHHHHhcCCH
Confidence 44444433 4433 23345677753
No 34
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=72.35 E-value=20 Score=39.64 Aligned_cols=98 Identities=11% Similarity=0.067 Sum_probs=65.5
Q ss_pred HHHHHHHHHhHhhhccccChh---hhhHHHHHHHHHHhHHHHH-HHhhcCCcccc----hHHHHHHHHHHHHHHHHHHHH
Q 006199 17 LYVAMILAYGSVRWWKIFSPD---QCSGINRFVAIFAVPLLSF-HFISTNDPYAM----NFRFIAADTLQKIIMLFVLGI 88 (657)
Q Consensus 17 IFlLI~LGYla~R~~glfs~e---~~~gLnkFV~~~ALPaLLF-~~iA~~dl~~l----~~~filAy~l~~livfll~~l 88 (657)
...+|.+|-++... |+++++ .++..++|+.+..++++++ -.++..|++++ .+.++.....+.+.+.+..++
T Consensus 207 ~v~mII~~vi~k~~-gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s~l 285 (347)
T TIGR00783 207 YAFMILIAAALKAF-GLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILGGAF 285 (347)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHHHHH
Confidence 45567888899998 999976 5556666777777777776 57888888875 477777777766666666666
Q ss_pred HHHHhcCCCcchhhHhH-hhh--ccCCcceeh
Q 006199 89 WTNFTKNGSLEWMITIF-SLS--TLPNTLVMG 117 (657)
Q Consensus 89 ~ar~~~~~~l~~~aav~-~Ls--sfsNtgfmG 117 (657)
..|+.+--+.| +++- ++| ..+.||-++
T Consensus 286 vGKllG~YPiE--~aItagLC~~~~GGtGDva 315 (347)
T TIGR00783 286 LGKLMGMYPVE--SAITAGLCNSGMGGTGDVA 315 (347)
T ss_pred HHHHhCCChHH--HHHHHhhhccCCCCCCcee
Confidence 66666533334 4433 454 445555444
No 35
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=70.54 E-value=1.1e+02 Score=35.53 Aligned_cols=93 Identities=19% Similarity=0.213 Sum_probs=53.4
Q ss_pred HHHHHHHHHhhHHHHHHH-HHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhccchHHHHHH
Q 006199 501 LIMVWRKLIRNPNTYSSL-IGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSM 579 (657)
Q Consensus 501 l~~vlkkllrNP~IiAil-LGLilsll~~r~gi~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~k~~~~~~k~vl~i~ 579 (657)
+..+.|+ ++.|.+++-+ +|+++.-.. .|+ ++. ...++.++..+.-+-||.+|+.+.... . +...+......
T Consensus 21 ~~~l~~r-l~~P~ivg~IlaGillGp~~--lg~-~~~--~~~~~~la~lGli~llF~~Gle~d~~~-l-~~~~~~~~~~~ 92 (558)
T PRK10669 21 LGMLANR-LRISPLVGYLLAGVLAGPFT--PGF-VAD--TKLAPELAELGVILLMFGVGLHFSLKD-L-MAVKSIAIPGA 92 (558)
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhhCccc--ccc-ccc--hHHHHHHHHHHHHHHHHHhHhcCCHHH-H-HHHhhHHHHHH
Confidence 3445555 6788887764 455544321 122 111 246788999999999999999998752 2 22223333334
Q ss_pred HHHHHHHHHHHHHHHHHhCCCh
Q 006199 580 AVRFLTGPAVMAAASIAVGLRG 601 (657)
Q Consensus 580 ~iKLIl~PLLv~ll~~l~gL~~ 601 (657)
..-+++.-++.+++.+.++.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~ 114 (558)
T PRK10669 93 IAQIAVATLLGMALSAVLGWSL 114 (558)
T ss_pred HHHHHHHHHHHHHHHHHhCCCH
Confidence 4454443344444456677653
No 36
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=70.53 E-value=1e+02 Score=37.97 Aligned_cols=82 Identities=17% Similarity=0.255 Sum_probs=49.7
Q ss_pred HHHHHHHHhhHHHHHHH-HHHHHHHHhhcCCCC-------CcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhccch
Q 006199 502 IMVWRKLIRNPNTYSSL-IGLVWSLIAFRWHVS-------MPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNS 573 (657)
Q Consensus 502 ~~vlkkllrNP~IiAil-LGLilsll~~r~gi~-------LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~k~~~~~~k 573 (657)
..++|+ ++-|.+++-+ +|+++.-..+ |.- .|.--...++.++..+.-+-||.+|+.+... ..++..+
T Consensus 59 ~~ll~r-l~~P~ivgeIlaGIlLGPs~l--g~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~--~lr~~~k 133 (832)
T PLN03159 59 VFILKP-FRQPRVISEILGGVILGPSVL--GQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDIS--VIRRTGK 133 (832)
T ss_pred HHHHHh-cCCChhHHHHHHHHhcCHhhh--CcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHH--HHHhcch
Confidence 334443 5788887754 4566543211 321 2322335789999999999999999999875 2334445
Q ss_pred HHHHHHHHHHHHHHHH
Q 006199 574 VATFSMAVRFLTGPAV 589 (657)
Q Consensus 574 ~vl~i~~iKLIl~PLL 589 (657)
..+.+.+.-+ +.|++
T Consensus 134 ~a~~ia~~~~-ilpf~ 148 (832)
T PLN03159 134 KALAIAIAGM-ALPFC 148 (832)
T ss_pred HHHHHHHHHH-HHHHH
Confidence 5555555544 34544
No 37
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=70.40 E-value=17 Score=39.70 Aligned_cols=85 Identities=13% Similarity=0.110 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhhcccchhhhhccchHHHHHHHHHHHHHHHHHHHHHHHhCCChHH-HHHHHHHhccCh--hhhHHHHHHH
Q 006199 549 GLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMAAASIAVGLRGTL-LHVAIVQAALPQ--GIVPFVFAKE 625 (657)
Q Consensus 549 a~PLALfvIG~sLa~~~k~~~~~~k~vl~i~~iKLIl~PLLv~ll~~l~gL~~~~-~~V~VL~AAmP~--Av~s~IfA~~ 625 (657)
-..+=+|++|.++..+. .....++-...++.|+++.-++.+++..++|.++.. ...+.+.+||=- +....-+..+
T Consensus 50 il~~~~~~~Ga~I~~k~--~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~g~~Gls~laiiaa~~~~Ng~ly~al~~~ 127 (312)
T PRK12460 50 LLGAFLLCMGAQISLKA--APQALLKGGVLTITKLGVAIVIGLLVGKFFGAEGIFGLSGLAIVAAMSNSNGGLYAALMGE 127 (312)
T ss_pred HHHHHHHHhcCeeeccc--cchhhhhhhhhhhHHHHHHHHHHHHHHHHcCcccccchHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34556889999998853 233456677788999999999999998999877653 344555555543 3333345899
Q ss_pred cCCChhHHHH
Q 006199 626 YNVHPAILST 635 (657)
Q Consensus 626 Yg~d~elaSs 635 (657)
||-++|..+.
T Consensus 128 yG~~~d~gA~ 137 (312)
T PRK12460 128 FGDERDVGAI 137 (312)
T ss_pred cCCHhhhhHH
Confidence 9988776554
No 38
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=69.11 E-value=10 Score=41.30 Aligned_cols=84 Identities=17% Similarity=0.102 Sum_probs=57.4
Q ss_pred HHHHHHHHhhhcccchhhhhccchHHHHHHHHHHHHHHHHHHHHHHHhCCCh-----H-HHHHHHHHhccCh--hhhHHH
Q 006199 550 LGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMAAASIAVGLRG-----T-LLHVAIVQAALPQ--GIVPFV 621 (657)
Q Consensus 550 ~PLALfvIG~sLa~~~k~~~~~~k~vl~i~~iKLIl~PLLv~ll~~l~gL~~-----~-~~~V~VL~AAmP~--Av~s~I 621 (657)
..+=+|++|.++..+. .....++-..+++.|+++.-++.+++..++|.++ . -...+.+.+||=- +....-
T Consensus 51 l~~~l~~~Ga~I~~k~--~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~a 128 (314)
T TIGR00793 51 LAVWFFCMGASIDLSA--TGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYAS 128 (314)
T ss_pred HHHHHHHhCCeeeecc--cchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHH
Confidence 4456789999998853 2334556667788999999999999999998776 2 2344555555543 333334
Q ss_pred HHHHcCCChhHHHH
Q 006199 622 FAKEYNVHPAILST 635 (657)
Q Consensus 622 fA~~Yg~d~elaSs 635 (657)
+..+||-++|..+.
T Consensus 129 L~~qyGd~~D~gA~ 142 (314)
T TIGR00793 129 IMQQYGTKEEAGAF 142 (314)
T ss_pred HHHHcCCHhhhhhh
Confidence 58999988776553
No 39
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=67.64 E-value=1.1e+02 Score=34.32 Aligned_cols=128 Identities=16% Similarity=0.169 Sum_probs=73.4
Q ss_pred HHHhhHHHHHHHHH-HHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhccchHHHHHHHHHHHH
Q 006199 507 KLIRNPNTYSSLIG-LVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLT 585 (657)
Q Consensus 507 kllrNP~IiAilLG-Lilsll~~r~gi~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~k~~~~~~k~vl~i~~iKLIl 585 (657)
+-++-|.+++.+++ +++.-. ++-.+..-.+.++.++....-+-||.+|+...... . ++..+.+......-.+.
T Consensus 26 ~rl~lp~vlg~llaGiilGp~----~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~-l-~~~~~~~~~~~~~~~~~ 99 (397)
T COG0475 26 KRLGLPPVLGYLLAGIILGPW----GLLLIIESSEIIELLAELGVVFLLFLIGLEFDLER-L-KKVGRSVGLGVAQVGLT 99 (397)
T ss_pred HHcCCchHHHHHHHHHhcCcc----cccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHH-H-HHhchhhhhhHHHHHHH
Confidence 44778888887654 443322 34455566788889999999999999999998852 2 33334424444555556
Q ss_pred HHHHHHHHH-H-HhCCChHHHHH-HHHHhccChhhhHHHHHHHcCCChhHHHHHHHHHH
Q 006199 586 GPAVMAAAS-I-AVGLRGTLLHV-AIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGM 641 (657)
Q Consensus 586 ~PLLv~ll~-~-l~gL~~~~~~V-~VL~AAmP~Av~s~IfA~~Yg~d~elaSsaVllST 641 (657)
.|.+..... . .+|++....-. ...++..-+++..-++. ++|.-.....+.++-..
T Consensus 100 ~~~~l~~~~~~~~~g~~~~~al~lg~~l~~sS~~i~~~iL~-e~~~~~~~~g~~~l~~~ 157 (397)
T COG0475 100 APFLLGLLLLLGILGLSLIAALFLGAALALSSTAIVLKILM-ELGLLKTREGQLILGAL 157 (397)
T ss_pred HHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHH-HhccccchHHHHHHHHH
Confidence 664444322 2 36777654333 33333333455555555 44544444444443333
No 40
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=65.19 E-value=1.5e+02 Score=34.83 Aligned_cols=115 Identities=14% Similarity=0.072 Sum_probs=63.8
Q ss_pred HHHHHHHhhHHHHHHHH-HHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhccchHHHHHHHH
Q 006199 503 MVWRKLIRNPNTYSSLI-GLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAV 581 (657)
Q Consensus 503 ~vlkkllrNP~IiAilL-GLilsll~~r~gi~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~k~~~~~~k~vl~i~~i 581 (657)
.+.++ ++-|.+++.++ |+++.-.++ |+- +. .+.+..++..+..+-||.+|+.+.... .+...+.++.....
T Consensus 22 ~l~~r-l~~p~ilg~ilaGillGP~~l--g~i-~~--~~~i~~laelGvv~LLF~iGLel~~~~--l~~~~~~~~~~g~~ 93 (601)
T PRK03659 22 PLAQR-LGIGAVLGYLLAGIAIGPWGL--GFI-SD--VDEILHFSELGVVFLMFIIGLELNPSK--LWQLRRSIFGVGAA 93 (601)
T ss_pred HHHHH-hCCChHHHHHHHHHHhccccc--cCC-Cc--HHHHHHHHHHHHHHHHHHHHhcCCHHH--HHHHHHHHHHHHHH
Confidence 34444 67888887654 566543211 321 21 134668899999999999999998752 22333444555555
Q ss_pred HHHHHHHHHHHHHHHhCCChHHHH-HHHHHhccChhhhHHHHHHH
Q 006199 582 RFLTGPAVMAAASIAVGLRGTLLH-VAIVQAALPQGIVPFVFAKE 625 (657)
Q Consensus 582 KLIl~PLLv~ll~~l~gL~~~~~~-V~VL~AAmP~Av~s~IfA~~ 625 (657)
-+++--+++.++.+++|++..... +.+..+...+++..-++.++
T Consensus 94 ~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~SSTaiv~~iL~e~ 138 (601)
T PRK03659 94 QVLLSAAVLAGLLMLTDFSWQAAVVGGIGLAMSSTAMALQLMREK 138 (601)
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 544433344444556777643222 22223334455555555544
No 41
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=63.05 E-value=82 Score=34.90 Aligned_cols=142 Identities=13% Similarity=0.088 Sum_probs=73.7
Q ss_pred CChHHHHH--HHHHHHHHHHHHHHHHhHhhhccccChhhhhHHHHHHHHHHhHHHHHHHhhcC--Ccccc--hHHHHH--
Q 006199 2 ITWKDLYL--VLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTN--DPYAM--NFRFIA-- 73 (657)
Q Consensus 2 i~~~dM~~--Il~~ilPIFlLI~LGYla~R~~glfs~e~~~gLnkFV~~~ALPaLLF~~iA~~--dl~~l--~~~fil-- 73 (657)
|+|++... ++...+|+.+=++-=|...|+ +-- +-.-+.+-..+--+++++|++.-+.-- .=+.+ ++.-++
T Consensus 172 v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~-kg~-~~~~~~f~p~ispi~ligLl~TivliF~~qg~~Iv~~p~~i~li 249 (342)
T COG0798 172 VPFWTIAKSVLLYLGIPLIAGVLTRYILIKK-KGR-EWYESRFLPKISPIALIGLLLTIVLIFAFQGEQIVEQPLDILLI 249 (342)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccc-hHHHHHHHhhcChHHHHHHHHHHHHHHHHhHHHHHhChHHHHHH
Confidence 45666544 455667776666666666665 321 112344444555577787776533221 11122 222222
Q ss_pred --HHHHHHHHHHHHHHHHHHHhcCCCcchhhHhHhhhccCCcceehHHHHHHHhh-cchhhHH-HHHHHHHHHHHHHH
Q 006199 74 --ADTLQKIIMLFVLGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYG-EYSGSLM-VQVVVLQCIIWYTL 147 (657)
Q Consensus 74 --Ay~l~~livfll~~l~ar~~~~~~l~~~aav~~LssfsNtgfmGiPLl~alfG-~~a~~~l-alivvv~~ill~tl 147 (657)
-+.+...+.|.+.+++.+..+-+..+ .+-.++.+-||.-=+.++++.++|| +++.... +.-..+|-+++..+
T Consensus 250 AIpl~iy~~~~~~i~~~i~k~lgl~y~~--~~~~~ft~aSNnfeLAiAvAi~lfG~~s~aA~a~vigpLvEVpvml~l 325 (342)
T COG0798 250 AIPLLIYFLLMFFISYFIAKALGLPYED--AAALVFTGASNNFELAIAVAIALFGLTSGAALATVVGPLVEVPVMLGL 325 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChhh--hhceeeeeccccHHHHHHHHHHhcCccccchhhhhccchhhHHHHHHH
Confidence 22222234444445555544433222 3334555679999999999999999 4443333 23334454444443
No 42
>PRK05326 potassium/proton antiporter; Reviewed
Probab=62.24 E-value=88 Score=36.33 Aligned_cols=108 Identities=15% Similarity=0.122 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhccchHHHHHHHHHHHHHHHH
Q 006199 510 RNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAV 589 (657)
Q Consensus 510 rNP~IiAilLGLilsll~~r~gi~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~k~~~~~~k~vl~i~~iKLIl~PLL 589 (657)
-++.+-+.++|+++.-. ...--..+.+..+.++....++-.+.+|+.+.... .....+..+....++-++.=|+.
T Consensus 244 ~Sg~la~~iaGl~l~n~----~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~-l~~~~~~~l~i~~~l~~vaR~l~ 318 (562)
T PRK05326 244 GSGFLAVYLAGLVLGNR----PIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSR-LLDIALPALLLALFLILVARPLA 318 (562)
T ss_pred CcHHHHHHHHHHHHhCC----cccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777788877533 22222457788888888889999999999887642 11111112222223344445666
Q ss_pred HHHHHHHhCCChHHHHHHHHHhccChhhhHHHHHH
Q 006199 590 MAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAK 624 (657)
Q Consensus 590 v~ll~~l~gL~~~~~~V~VL~AAmP~Av~s~IfA~ 624 (657)
+++....++++ +....++-.+.|-|..+.++|.
T Consensus 319 v~l~~~~~~~~--~~e~~~i~~~g~RG~v~i~lA~ 351 (562)
T PRK05326 319 VFLSLLPFRFN--LREKLFISWVGLRGAVPIVLAT 351 (562)
T ss_pred HHHHHccCCCC--HhhhheeeeecchhHHHHHHHH
Confidence 66665555554 3333444445677777777664
No 43
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=61.73 E-value=81 Score=34.78 Aligned_cols=136 Identities=16% Similarity=0.017 Sum_probs=68.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhccchHHHHHHH
Q 006199 501 LIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMA 580 (657)
Q Consensus 501 l~~vlkkllrNP~IiAilLGLilsll~~r~gi~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~k~~~~~~k~vl~i~~ 580 (657)
.++++|..+.|+-++-.+.|+++.+..-.-|++- +..+...+=+.. +++|.+-+-+.--++. ..+|+..+..+
T Consensus 167 ~~~~l~E~l~~~sv~LLlGgliIG~~~g~~g~~~---i~pf~~~lF~G~--L~lFLLeMGl~A~~rL--~~l~~~g~~li 239 (327)
T PF05982_consen 167 WGELLHESLTNKSVVLLLGGLIIGFLAGPEGVES---IKPFFVDLFKGV--LCLFLLEMGLVAARRL--RDLRKVGWFLI 239 (327)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHhheeCccchhh---ccchhhccHHHH--HHHHHHHhhHHHHHhh--HHHHhhhHHHH
Confidence 4788999999999999999999988722112221 222222222233 4555555544332112 22344443333
Q ss_pred HHHHHHHHHHHH----HHHHhCCChHHHHHHHHHhccChhhhHHHHHHHcCCChhHHHHHHHHHHHHH
Q 006199 581 VRFLTGPAVMAA----ASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIA 644 (657)
Q Consensus 581 iKLIl~PLLv~l----l~~l~gL~~~~~~V~VL~AAmP~Av~s~IfA~~Yg~d~elaSsaVllSTLLS 644 (657)
.==+++|++-.. +.+++|++.--...+.+++|.-+=+.+. =|.|....+..-+-.+..|.-+.
T Consensus 240 ~Fgi~~Pli~a~ig~~lg~~~gls~Gg~~llavLaASASYIAvP-AAmR~AiPeAnpslyl~~SLgiT 306 (327)
T PF05982_consen 240 AFGILMPLINALIGIGLGWLLGLSPGGAVLLAVLAASASYIAVP-AAMRAAIPEANPSLYLTASLGIT 306 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHhhHhhhhhh-HHHHhhCcccCchHHHHHHHhcc
Confidence 334566766443 3466788755444444444332222221 24555554444444444444333
No 44
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=61.24 E-value=77 Score=34.83 Aligned_cols=125 Identities=12% Similarity=0.126 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhHhhhccccChhhhhHHHHH---HHHHHhHHHHHHHhhcCCcccc---hHHHHHHHHHHHHHHHHHHHHH
Q 006199 16 PLYVAMILAYGSVRWWKIFSPDQCSGINRF---VAIFAVPLLSFHFISTNDPYAM---NFRFIAADTLQKIIMLFVLGIW 89 (657)
Q Consensus 16 PIFlLI~LGYla~R~~glfs~e~~~gLnkF---V~~~ALPaLLF~~iA~~dl~~l---~~~filAy~l~~livfll~~l~ 89 (657)
-+.+=+.+|-+++++ ++ +..+.+.+. +-..++=+.++...+.. .++. ....+++..+--++.|+++++.
T Consensus 169 ~vllP~~LG~~~r~~---~~-~~~~~~~~~l~~vs~~~illIv~~~~s~~-~~~~~~~~~~v~~~v~~~n~lg~~~gy~~ 243 (319)
T COG0385 169 QVLLPFVLGQLLRPL---LP-KWVERLKKALPPVSVLSILLIVYAAFSAA-VENGIWSGLLIFVAVILHNLLGLLLGYFG 243 (319)
T ss_pred HHHHHHHHHHHHHHH---HH-HHHHHHhhhcchhhHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444567777765 32 333333333 33444445555555553 2222 2223333333344556656666
Q ss_pred HHHhcCCCcchhhHhHhhh-ccCCcceehHHHHHHHhh-cchhhHHHHHHHHHHHHHHHHH
Q 006199 90 TNFTKNGSLEWMITIFSLS-TLPNTLVMGIPLLIAMYG-EYSGSLMVQVVVLQCIIWYTLL 148 (657)
Q Consensus 90 ar~~~~~~l~~~aav~~Ls-sfsNtgfmGiPLl~alfG-~~a~~~lalivvv~~ill~tl~ 148 (657)
+|+.+-+..| .-..++| +.-|.+ .|.|+...-+| +..+.|.+++...|++..-.++
T Consensus 244 ar~~g~~~a~--~iti~ie~g~qn~~-lg~alA~~f~~~~~~alP~aif~~~q~~~~a~la 301 (319)
T COG0385 244 ARLLGFDKAD--EITIAIEGGMQNLG-LGAALAAAFFGNPLMALPLAIFSVWQNMSGAVLA 301 (319)
T ss_pred HHHhCCChhh--eeeEEEeeccccHH-HHHHHHHhcCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 7766533222 2223454 455544 79999999567 6788889999998887654433
No 45
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=58.26 E-value=63 Score=35.16 Aligned_cols=116 Identities=18% Similarity=0.107 Sum_probs=73.0
Q ss_pred HHHH-HHHHHHHHhHHHHHHHHHhhhcccchhhhhccchHHH---HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHh
Q 006199 536 KIIE-KSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVAT---FSMAVRFLTGPAVMAAASIAVGLRGTLLHVAIVQA 611 (657)
Q Consensus 536 ~~L~-~~L~~Lg~aa~PLALfvIG~sLa~~~k~~~~~~k~vl---~i~~iKLIl~PLLv~ll~~l~gL~~~~~~V~VL~A 611 (657)
+.+. +....++..+....++.+-...+...+........+. ..+++=.++.-.+.+.+.++++++....+.+.+..
T Consensus 205 ~~~~~~~~~~~~~~~~l~l~~iv~~~~~~~~~~i~~~~~~i~~~~~~v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~ 284 (328)
T TIGR00832 205 EWYEKVFLPKISPWSLIALLFTIVLLFAFQGETIIELPLDIALIAIPLLIYFYIMFFLTFALAKKLGLPYSITAPAAFTG 284 (328)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChhhhhhheehh
Confidence 3444 4444555555444344444433333222222322222 23445566667777777888999999999999999
Q ss_pred ccChhhhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHH
Q 006199 612 ALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVY 651 (657)
Q Consensus 612 AmP~Av~s~IfA~~Yg~d~elaSsaVllSTLLSLptiil~ 651 (657)
++=-+..+..+|..+=.+.+.++.....+.++=+|.+..+
T Consensus 285 g~qN~~lai~lA~~~f~~~~~~a~~~~~~~l~e~~~~~~~ 324 (328)
T TIGR00832 285 ASNNFELAIAVAISLFGLNSGAALATVVGPLIEVPVMLSL 324 (328)
T ss_pred hhhhHHHHHHHHHHhCCCCcccHHHHHhhhhhehhhhhee
Confidence 9988888888888775555777878888887777766543
No 46
>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]
Probab=57.91 E-value=21 Score=37.27 Aligned_cols=91 Identities=15% Similarity=0.196 Sum_probs=61.8
Q ss_pred HHHHHhhhcccch-hhhhccchHHHHHHHHHHHHHHHHHHHHHHHh---CCChHHHHHHHHHhccChhhhHH-HHHHHcC
Q 006199 553 AMFSLGLFMALQP-KIIACGNSVATFSMAVRFLTGPAVMAAASIAV---GLRGTLLHVAIVQAALPQGIVPF-VFAKEYN 627 (657)
Q Consensus 553 ALfvIG~sLa~~~-k~~~~~~k~vl~i~~iKLIl~PLLv~ll~~l~---gL~~~~~~V~VL~AAmP~Av~s~-IfA~~Yg 627 (657)
..|.-|++|.... .....+|+.-+.+.+.-|++.|.+.|+++.+. +.|.++..-+.+.++||+-+.+- ++...-|
T Consensus 63 IF~~SGL~LkTE~l~aA~~~w~LhLFilI~~Ll~tPs~~~Lf~~~~~~~~i~~wLl~GL~~~~CMPttvSS~ViLT~~aG 142 (287)
T KOG4821|consen 63 IFLQSGLGLKTESLMAAMLNWRLHLFILILSLLITPSIVYLFCCAVKAAKIDDWLLIGLILTACMPTTVSSNVILTTNAG 142 (287)
T ss_pred EEeecCccccHHHHHHHHhCCchHHHHHHHHHHHhHHHHHHHHHHHhCcchhHHHHhhheeeeecCCccccceeeeeccC
Confidence 3455566665532 11134688888999999999999999998654 45667888899999999976654 4555556
Q ss_pred CChhHHHHHHHHHHHHHHH
Q 006199 628 VHPAILSTAVIFGMLIALP 646 (657)
Q Consensus 628 ~d~elaSsaVllSTLLSLp 646 (657)
.++ ++..+-|.++++.
T Consensus 143 GNa---~A~~v~S~f~g~L 158 (287)
T KOG4821|consen 143 GNA---SALCVCSVFIGNL 158 (287)
T ss_pred ccH---HHHHHHHHHHHHH
Confidence 654 4455555555543
No 47
>COG3329 Predicted permease [General function prediction only]
Probab=56.17 E-value=85 Score=34.59 Aligned_cols=64 Identities=17% Similarity=0.198 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccc
Q 006199 498 RLILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQ 564 (657)
Q Consensus 498 ~~il~~vlkkllrNP~IiAilLGLilsll~~r~gi~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~ 564 (657)
|...|++++..|.||-+...+.|+++.++. |-+--+.+..+.+-+=+...-+-|+.+|+.-.++
T Consensus 204 ~v~~~ell~Esflnpal~lllggl~iGlit---Ge~g~~vl~~F~~~lFqGvL~lflL~MGm~A~rr 267 (372)
T COG3329 204 RVKIWELLQESFLNPALVLLLGGLAIGLIT---GEQGESVLKPFFDPLFQGVLCLFLLDMGMTAGRR 267 (372)
T ss_pred chhhHHHHHHHHcCchHHHHHHHHHHhhee---ccCchhhhhhhhHHHHHHHHHHHHHHHhHHHHHH
Confidence 345689999999999999999999998872 3333345566666677778888888899887664
No 48
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=53.35 E-value=1.3e+02 Score=37.05 Aligned_cols=108 Identities=11% Similarity=-0.020 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCcH--HHHHHHHHHHHhHHHHHHHHHhhhcccchh----hhhccchHHHHHHHHHHH
Q 006199 511 NPNTYSSLIGLVWSLIAFRWHVSMPK--IIEKSISILSDAGLGMAMFSLGLFMALQPK----IIACGNSVATFSMAVRFL 584 (657)
Q Consensus 511 NP~IiAilLGLilsll~~r~gi~LP~--~L~~~L~~Lg~aa~PLALfvIG~sLa~~~k----~~~~~~k~vl~i~~iKLI 584 (657)
+-++-++++|+++... +. ... -...+.+.+......+..+.+|+.+....- .....|..++..+++=++
T Consensus 265 SGfLAVFVAGl~~gn~----~~-~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifV 339 (810)
T TIGR00844 265 DDLLVSFFAGTAFAWD----GW-FAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLVVIFL 339 (810)
T ss_pred ccHHHHHHHHHHHhcc----cc-hhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHHHHHH
Confidence 4555556667766543 21 010 122244445555566788999998864310 001235556666667777
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhccChhhhHHHHH
Q 006199 585 TGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFA 623 (657)
Q Consensus 585 l~PLLv~ll~~l~gL~~~~~~V~VL~AAmP~Av~s~IfA 623 (657)
.-|.+++++..+.+-...+...+++-..-|-|+.+.+|+
T Consensus 340 rRPpaVlll~~li~~~~s~rErlFigWFGpRGIGSIyyl 378 (810)
T TIGR00844 340 RRIPAVLILKPLIPDIKSWREAMFIGHFGPIGVGAVFAA 378 (810)
T ss_pred HHHHHHHHHhhhcccCCCHHHHHHheeeccccHHHHHHH
Confidence 788888776555554445777888888889877776654
No 49
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=52.16 E-value=3.5e+02 Score=29.46 Aligned_cols=122 Identities=14% Similarity=0.139 Sum_probs=64.4
Q ss_pred hHHHHHHHHH-HHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccch-hhhhccchHHHHHHHHHHHHHHH
Q 006199 511 NPNTYSSLIG-LVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQP-KIIACGNSVATFSMAVRFLTGPA 588 (657)
Q Consensus 511 NP~IiAilLG-Lilsll~~r~gi~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~-k~~~~~~k~vl~i~~iKLIl~PL 588 (657)
+|.+++.+++ .+++.++ .....+|.++....+.+-+ ..+|..+.... +..++........++.=+++.=+
T Consensus 178 a~~llGpml~~a~~~~~~-~~~~~~P~~l~~~aqv~iG-------~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~ 249 (318)
T PF05145_consen 178 APWLLGPMLVSAILNLFG-GPSFSLPPWLVNAAQVLIG-------ASIGSRFTRETLRELRRLLPPALLSTLLLLALCAL 249 (318)
T ss_pred cHHHHHHHHHHHHHHHHh-CCCCCCCHHHHHHHHHHHH-------HHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445554444 4444441 1245688766655554422 23455555432 11111122222333333344444
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhccChhhhHH-HHHHHcCCChhHHHHHHHHHHHHH
Q 006199 589 VMAAASIAVGLRGTLLHVAIVQAALPQGIVPF-VFAKEYNVHPAILSTAVIFGMLIA 644 (657)
Q Consensus 589 Lv~ll~~l~gL~~~~~~V~VL~AAmP~Av~s~-IfA~~Yg~d~elaSsaVllSTLLS 644 (657)
+.+++.++.++|... .+++..|-+.... ++|...|.|+..+++.=++=.++-
T Consensus 250 ~a~~l~~~~~~~~~t----~~La~aPGGl~eM~l~A~~l~~d~~~V~~~q~~Rl~~v 302 (318)
T PF05145_consen 250 FAWLLSRLTGIDFLT----ALLATAPGGLAEMALIALALGADVAFVAAHQVVRLLFV 302 (318)
T ss_pred HHHHHHHHHCCCHHH----HHHHhCCccHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 455555667776543 5668899877665 458999999888776655544433
No 50
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=51.04 E-value=2.1e+02 Score=31.66 Aligned_cols=115 Identities=16% Similarity=0.128 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcHH--HHHHHHHHHHhHHHHHHHHHhhhcccchhhhhccchHHHHHHHHHHHHHHHHHH
Q 006199 514 TYSSLIGLVWSLIAFRWHVSMPKI--IEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMA 591 (657)
Q Consensus 514 IiAilLGLilsll~~r~gi~LP~~--L~~~L~~Lg~aa~PLALfvIG~sLa~~~k~~~~~~k~vl~i~~iKLIl~PLLv~ 591 (657)
++-.+.|+++.++++. ++|.. +.+.+- -+-++++..++.+... ......+...++-++.|-++.+
T Consensus 251 v~vsi~gLi~aLtPf~---~lpgs~elgtv~l-----Y~~v~vias~Ad~~~i-----~taP~~i~~gf~il~~h~~v~f 317 (384)
T COG5505 251 VLVSITGLIIALTPFE---RLPGSQELGTVLL-----YLFVVVIASPADLRLI-----VTAPLIILFGFIILISHLAVSF 317 (384)
T ss_pred hHHHHHHHHHHhCccc---cCCchhhhhHHHH-----HHHHHHhccchhHHHH-----HhhhHHHHHHHHHHHHHHHHHH
Confidence 4556788999988432 35543 222222 1234455555554432 1233445566777888889999
Q ss_pred HHHHHhCCChHHHHHHHHHhccChhhhHHHHHHHcCCChhHHHHHHHHHHHHH
Q 006199 592 AASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIA 644 (657)
Q Consensus 592 ll~~l~gL~~~~~~V~VL~AAmP~Av~s~IfA~~Yg~d~elaSsaVllSTLLS 644 (657)
.+..+|.+|-....++.+. -.--.+.+.++|..|| +++++-.++.+|+-.
T Consensus 318 ~~~KlF~~dL~~i~~AslA-niGG~~sAp~~A~A~n--r~lv~~gvlmg~lG~ 367 (384)
T COG5505 318 AAGKLFRVDLEEILLASLA-NIGGPTSAPAMAIAKN--RELVAPGVLMGTLGY 367 (384)
T ss_pred HHHHHHHhHHHHHHHHHHh-ccCCccchhHHHhhcC--chhcchHHHHHHHHH
Confidence 9999999887776666554 3444566778899998 689999999998865
No 51
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=46.91 E-value=4.6e+02 Score=29.38 Aligned_cols=130 Identities=14% Similarity=0.097 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCC-CcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhccchHHH--HHHHHHHHHH
Q 006199 510 RNPNTYSSLIGLVWSLIAFRWHVS-MPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVAT--FSMAVRFLTG 586 (657)
Q Consensus 510 rNP~IiAilLGLilsll~~r~gi~-LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~k~~~~~~k~vl--~i~~iKLIl~ 586 (657)
-.|++++++++++++-+ |+- .|. -...-+.+..-.+|++++.+=.+...++ ..+...+... .+..+=.++.
T Consensus 25 l~~~vl~~~~~~~lsnl----gli~~p~-~s~~y~~v~~~~vPlai~LlLl~~Dlr~-i~~~g~~~l~~F~~~~~g~viG 98 (378)
T PF05684_consen 25 LPGAVLCYLLGMLLSNL----GLIDSPA-SSPVYDFVWTYLVPLAIPLLLLSADLRR-ILRLGGRLLLAFLIGAVGTVIG 98 (378)
T ss_pred cCHHHHHHHHHHHHHHC----CCcCCCC-cchHHHHHHHHHHHHHHHHHHHHccHHH-HHHhhHHHHHHHHHHHHHHHHH
Confidence 47899999999999988 643 231 2334455567788888777666665542 2233323222 2222333333
Q ss_pred HHHHHHHHHHhCCChH-HHHHHHHHhc-cChhhhHHHHHHHcCCChhHHHHHHHHHHHHHHH
Q 006199 587 PAVMAAASIAVGLRGT-LLHVAIVQAA-LPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALP 646 (657)
Q Consensus 587 PLLv~ll~~l~gL~~~-~~~V~VL~AA-mP~Av~s~IfA~~Yg~d~elaSsaVllSTLLSLp 646 (657)
=++.+.+.... +.++ ++....+.+. .=-++|-.-.++.++.+.+..+.++..-++++.+
T Consensus 99 ~~va~~l~~~~-l~~~~wk~ag~l~gsyiGGs~N~~Av~~al~~~~~~~~a~~aaDnv~~~~ 159 (378)
T PF05684_consen 99 AVVAFLLFGGF-LGPEGWKIAGMLAGSYIGGSVNFVAVAEALGVSDSLFAAALAADNVVMAL 159 (378)
T ss_pred HHHHHHHHhhc-ccchHHHHHHHHHhcccCchhHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 33333332211 2334 4444444433 3336788888999999999888888888877643
No 52
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=45.94 E-value=4.3e+02 Score=28.75 Aligned_cols=57 Identities=18% Similarity=0.190 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhccChhhh-HHHHHHHcCCChhHHHHHHH
Q 006199 578 SMAVRFLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIV-PFVFAKEYNVHPAILSTAVI 638 (657)
Q Consensus 578 i~~iKLIl~PLLv~ll~~l~gL~~~~~~V~VL~AAmP~Av~-s~IfA~~Yg~d~elaSsaVl 638 (657)
.++.=+++.-+..|.+.+..++|.. .-+.+++|-+.+ ..++|++||.|.+.++..=.
T Consensus 60 ~~~~~~~~~~~~~~~l~r~~~~d~~----TA~~~~~PGg~s~m~~la~~~gad~~~Va~~q~ 117 (318)
T PF05145_consen 60 LLVVTLLLSLVGAWLLRRISGLDRA----TAFFASMPGGLSEMVALAEEYGADTRRVALVQS 117 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChh----HHHHHcCCccHHHHHHHHHHcCCChhhhHHHHH
Confidence 3333334444444444455556543 356788998554 55779999999887654433
No 53
>PRK03818 putative transporter; Validated
Probab=44.47 E-value=4.4e+02 Score=30.98 Aligned_cols=74 Identities=15% Similarity=0.228 Sum_probs=36.3
Q ss_pred CCCCcHHHHHHHHHHHHhHHHHHHHH--Hhhhcccch--hhhhccchHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHH
Q 006199 531 HVSMPKIIEKSISILSDAGLGMAMFS--LGLFMALQP--KIIACGNSVATFSMAVRFLTGPAVMAAASIAVGLRGTLLHV 606 (657)
Q Consensus 531 gi~LP~~L~~~L~~Lg~aa~PLALfv--IG~sLa~~~--k~~~~~~k~vl~i~~iKLIl~PLLv~ll~~l~gL~~~~~~V 606 (657)
++++|+....+++.+ .++||+ +|+.-.... ..++..++..+..++ =.++..++.+++.++++++... .+
T Consensus 51 ~~~~~~~~~~~~~~~-----gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~ 123 (552)
T PRK03818 51 GLTLDSDMLHFIQEF-----GLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVL-IVILGGLVTAILHKLFGIPLPV-ML 123 (552)
T ss_pred CcccChHHHHHHHHH-----HHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCHHH-HH
Confidence 777887776666633 355555 454433221 122223333333322 2233334455556789998663 33
Q ss_pred HHHHh
Q 006199 607 AIVQA 611 (657)
Q Consensus 607 ~VL~A 611 (657)
-++..
T Consensus 124 G~~aG 128 (552)
T PRK03818 124 GIFSG 128 (552)
T ss_pred HHhhc
Confidence 34443
No 54
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=40.23 E-value=2.7e+02 Score=31.07 Aligned_cols=103 Identities=12% Similarity=0.175 Sum_probs=64.7
Q ss_pred cccChhhhhHHHHHH-----HHHHhHHHHHHHhhcCCcccc---hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhH
Q 006199 32 KIFSPDQCSGINRFV-----AIFAVPLLSFHFISTNDPYAM---NFRFIAADTLQKIIMLFVLGIWTNFTKNGSLEWMIT 103 (657)
Q Consensus 32 glfs~e~~~gLnkFV-----~~~ALPaLLF~~iA~~dl~~l---~~~filAy~l~~livfll~~l~ar~~~~~~l~~~aa 103 (657)
++++++..+..+.|. +|+-+-+|+--++-..|-.-+ -.+|+-...++.+..++++.+...+..-+..+ +
T Consensus 7 ~~~p~~~~~~~~~fm~~~~Fl~fyIa~LI~GSIL~m~Rk~Lik~~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~~---~ 83 (347)
T TIGR00783 7 NILPQNVIDATSNFMKGSNFLYLYIACLIVGSILGMNRKLLLKALMRFIPPALIGMVLAVIVGILVGTLFGLGFDH---S 83 (347)
T ss_pred CCCCHHHHHHHHHHHccCChHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhH---h
Confidence 889999999998865 567788899888888877644 46777777777777777665555444322112 2
Q ss_pred hHhh-----hccCCcceehHHHHHH-HhhcchhhHHHHHH
Q 006199 104 IFSL-----STLPNTLVMGIPLLIA-MYGEYSGSLMVQVV 137 (657)
Q Consensus 104 v~~L-----ssfsNtgfmGiPLl~a-lfG~~a~~~laliv 137 (657)
++-. +.--+.|-+.+....+ +.|.++..++++++
T Consensus 84 ~~~i~lPIm~GG~GaGavPLS~~Y~~~~g~~~~~~~s~~i 123 (347)
T TIGR00783 84 LMYIVMPIMAGGVGAGIVPLSIIYSAITGRSSEEIFSQLI 123 (347)
T ss_pred hheeeehhcCCCcccchhhHHHHHHHHhCCCHHHHHHHHH
Confidence 2221 2222355555555554 55776666555443
No 55
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=39.41 E-value=4.6e+02 Score=28.33 Aligned_cols=98 Identities=13% Similarity=0.010 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhccchHHHHHHHHHHHHHHHHHH
Q 006199 512 PNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMA 591 (657)
Q Consensus 512 P~IiAilLGLilsll~~r~gi~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~k~~~~~~k~vl~i~~iKLIl~PLLv~ 591 (657)
|++.-+++|.++.-. ++--++.....-++.-+.+.|+-+|.-=..-... .. ...+..+....++=.++.-++.+
T Consensus 8 ~i~~ii~~G~~~~~~----~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~ 81 (385)
T PF03547_consen 8 PIFLIILLGYLLGRF----GILDPEASKGLSKLVFNVFLPALIFSSIANTDTL-ED-LLSLWFIPVFAFIIFILGLLLGF 81 (385)
T ss_pred HHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccch-hh-hhhhHHHHHHHHHHHHHHHHHHH
Confidence 788888999887766 7766777888888888999999988754331111 00 11222233333333334444455
Q ss_pred HHHHHhCCChHHHHHHHHHhccCh
Q 006199 592 AASIAVGLRGTLLHVAIVQAALPQ 615 (657)
Q Consensus 592 ll~~l~gL~~~~~~V~VL~AAmP~ 615 (657)
++..++..+.....+.++.++.+=
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~N 105 (385)
T PF03547_consen 82 LLSRLFRLPKEWRGVFVLAASFGN 105 (385)
T ss_pred HHHHhcCCCcccceEEEecccCCc
Confidence 555667778777776666655544
No 56
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional
Probab=38.79 E-value=6.5e+02 Score=28.78 Aligned_cols=92 Identities=17% Similarity=0.242 Sum_probs=53.8
Q ss_pred CCCCcHHHHHHHHHHHHhHH------HHHHHHHhhhcccchhhhhccchHHHHHHHHHHHHHHHHHHHHHHHhCCChHHH
Q 006199 531 HVSMPKIIEKSISILSDAGL------GMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMAAASIAVGLRGTLL 604 (657)
Q Consensus 531 gi~LP~~L~~~L~~Lg~aa~------PLALfvIG~sLa~~~k~~~~~~k~vl~i~~iKLIl~PLLv~ll~~l~gL~~~~~ 604 (657)
...+|+.+.+.+.-++..-. -+.++.+|+.|... ..=+++.|++. -+..-+|+|+.+.
T Consensus 294 ~~gvp~~i~~~i~~~~~~~~~~Ll~i~~~~lvlGmfld~~---------------a~ili~~Pil~-Pi~~~~Gidpv~f 357 (425)
T PRK15060 294 IAELPMMVSDLLQPLVDSPRLLFIVIMVAIMVVGMVMDLT---------------PTVLILTPVLM-PLVKEAGIDPIYF 357 (425)
T ss_pred HcChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhHH---------------HHHHHHHHHHH-HHHHHcCCChHHH
Confidence 44678888887776653222 22334444444331 12234445443 3334579999887
Q ss_pred HHHHHHh-----cc-ChhhhHHHHHHHcCCChhHHHHHHH
Q 006199 605 HVAIVQA-----AL-PQGIVPFVFAKEYNVHPAILSTAVI 638 (657)
Q Consensus 605 ~V~VL~A-----Am-P~Av~s~IfA~~Yg~d~elaSsaVl 638 (657)
.+.++.. .. |.+.+.|+.+.--|.+.+.....++
T Consensus 358 gii~~~~~~ig~iTPPvG~~lfv~~~ia~~~~~~i~~~~~ 397 (425)
T PRK15060 358 GVMFIINCSIGLITPPVGNVLNVISGVAKLKFDDAVRGVF 397 (425)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHhcCCCHHHHHHHHH
Confidence 7655543 24 5599999988888877766655443
No 57
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=37.96 E-value=3.7e+02 Score=31.63 Aligned_cols=76 Identities=11% Similarity=0.143 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccch--hhhhccchHHHHHHHHHHHHHHHHHHHHH
Q 006199 517 SLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQP--KIIACGNSVATFSMAVRFLTGPAVMAAAS 594 (657)
Q Consensus 517 ilLGLilsll~~r~gi~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~--k~~~~~~k~vl~i~~iKLIl~PLLv~ll~ 594 (657)
.++|+++..+ |+++|+.+. ....-+=++++|+.-..+. ..++..++..+..++ =.++.-++++++.
T Consensus 42 Lfvgl~~G~~----g~~i~~~v~-------~~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~~~~a~~-~~~~~~~~~~~~~ 109 (562)
T TIGR03802 42 LIVAVLIGQL----GIQIDPGVK-------AVFFALFIFAIGYEVGPQFFASLKKDGLREIILALV-FAVSGLITVYALA 109 (562)
T ss_pred HHHHHHHHhc----CCCCChHHH-------HHHHHHHHHHhhhccCHHHHHHHHhccHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3444444444 788887643 2333334445555544331 222334554444433 3344556777777
Q ss_pred HHhCCChHHH
Q 006199 595 IAVGLRGTLL 604 (657)
Q Consensus 595 ~l~gL~~~~~ 604 (657)
++++++....
T Consensus 110 ~~~g~~~~~~ 119 (562)
T TIGR03802 110 KIFGLDKGTA 119 (562)
T ss_pred HHhCCCHHHH
Confidence 8899986543
No 58
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=37.55 E-value=7.5e+02 Score=29.14 Aligned_cols=115 Identities=17% Similarity=0.277 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhccchHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHH------
Q 006199 537 IIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMAAASIAVGLRGTLLHVAIVQ------ 610 (657)
Q Consensus 537 ~L~~~L~~Lg~aa~PLALfvIG~sLa~~~k~~~~~~k~vl~i~~iKLIl~PLLv~ll~~l~gL~~~~~~V~VL~------ 610 (657)
......+.|.+...|-..+.+|+.+-.. .. . -.+.-...-=.+.+|.++ -+..++|++++..+.+.=.
T Consensus 371 ia~~~A~~L~~~~l~~~~~~i~~~l~~~--~i-N--lfI~S~Sgkwal~aPI~v-Pm~~~lGisp~~t~~AyriGDs~tN 444 (513)
T TIGR00819 371 IAVGGADFLEESGLAGIPAFIGFALICA--FI-C--LFIASASAIWAILAPIFV-PMFMLAGFAPAFAQAAFRIADSSTL 444 (513)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHH--HH-H--heeccHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHhchHHH
Confidence 3444455554444455556666554432 00 0 000011111223455333 4445678888877665432
Q ss_pred hccChh---hhHHHHHHHcCCChhH---HHHHHHHHHHH--H-HHHHHHHHHHhcC
Q 006199 611 AALPQG---IVPFVFAKEYNVHPAI---LSTAVIFGMLI--A-LPITLVYYIVLGL 657 (657)
Q Consensus 611 AAmP~A---v~s~IfA~~Yg~d~el---aSsaVllSTLL--S-Lptiil~~~LLgl 657 (657)
.-.|+. .....+++||+.|... .|.++=.+..+ + ...+++||.+|||
T Consensus 445 iItP~~~y~~lil~~~~~y~k~~g~Gtl~s~mlPysi~~l~~w~~l~~~w~~~~gl 500 (513)
T TIGR00819 445 IIAPMMPFFGLFLAFLMKYKKDAGLGTLISLMLPYPAFFLIAWIALFCAWVFVLGL 500 (513)
T ss_pred hhccCcchHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345776 7888899999887543 23333233221 1 3445666666565
No 59
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=36.74 E-value=93 Score=34.17 Aligned_cols=59 Identities=20% Similarity=0.107 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhhcccchhhhhccchHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 006199 549 GLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMAAASIAVGLRGTLLHVAIV 609 (657)
Q Consensus 549 a~PLALfvIG~sLa~~~k~~~~~~k~vl~i~~iKLIl~PLLv~ll~~l~gL~~~~~~V~VL 609 (657)
-.|..-|.+|..+..+. ....++.-++..+. =.++.+.+.+...++++.++......++
T Consensus 204 lLp~~~~~lG~~l~lq~-i~~~G~~GilL~~~-~~~~t~~~~~~~~Rl~~~~~g~~g~a~~ 262 (326)
T PRK05274 204 LIPFFAFALGNGIDLGT-IITAGLSGILLGVA-VVAVTGIPLYLADRLIGGGNGVAGAAAG 262 (326)
T ss_pred EHHHHHHHHhcceeHhH-HHhcCCcchhhhhh-HhhccchhhHhHhheeecCCCcchHHHH
Confidence 67778888999999874 33444444433332 3344455556666777655543334333
No 60
>COG3329 Predicted permease [General function prediction only]
Probab=35.82 E-value=3.8e+02 Score=29.76 Aligned_cols=53 Identities=15% Similarity=0.362 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 006199 497 TRLILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGL 559 (657)
Q Consensus 497 ~~~il~~vlkkllrNP~IiAilLGLilsll~~r~gi~LP~~L~~~L~~Lg~aa~PLALfvIG~ 559 (657)
....+....+++ .+|.+.=.++|++...+ +-.+.+|+.+.+.+.+. -|+.||.
T Consensus 4 ls~fl~~f~~nL-~sP~llFf~~Gmlia~~--ksdl~iP~~i~~~lsly-------LL~aIG~ 56 (372)
T COG3329 4 LSEFLMDFVGNL-LSPTLLFFILGMLIAAF--KSDLEIPEAIYQALSLY-------LLLAIGF 56 (372)
T ss_pred HHHHHHHHHhhh-ccchHHHHHHHHHHHHH--hccccCchHHHHHHHHH-------HHHHHhc
Confidence 345666777775 48999999999999887 33568999998887764 5677775
No 61
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=33.70 E-value=2.6e+02 Score=30.16 Aligned_cols=26 Identities=12% Similarity=0.114 Sum_probs=19.6
Q ss_pred HHHHHhHHHHHHHhhcCCcccc---hHHH
Q 006199 46 VAIFAVPLLSFHFISTNDPYAM---NFRF 71 (657)
Q Consensus 46 V~~~ALPaLLF~~iA~~dl~~l---~~~f 71 (657)
+-.+.+|.-+..++..+|+..| +|.+
T Consensus 268 ~s~iflPpTlIagiyGMNf~~mPel~~~~ 296 (322)
T COG0598 268 VSTIFLPPTLITGFYGMNFKGMPELDWPY 296 (322)
T ss_pred HHHHHHhhHHHHcccccCCCCCcCCCCcc
Confidence 4456688888889999988854 6766
No 62
>PRK09546 zntB zinc transporter; Reviewed
Probab=33.68 E-value=86 Score=33.69 Aligned_cols=25 Identities=8% Similarity=0.002 Sum_probs=19.4
Q ss_pred HHHHHHHHhHHHHHHHhhcCCcccc
Q 006199 43 NRFVAIFAVPLLSFHFISTNDPYAM 67 (657)
Q Consensus 43 nkFV~~~ALPaLLF~~iA~~dl~~l 67 (657)
-+++--+.+|.-+..++..+|+..|
T Consensus 267 Ltilt~IflPlT~IaGiyGMNf~~m 291 (324)
T PRK09546 267 MSLMAMVFLPTTFLTGLFGVNLGGI 291 (324)
T ss_pred HHHHHHHHHHHHHHHhhhccccCCC
Confidence 3455567789999999999998755
No 63
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=32.42 E-value=3.1e+02 Score=30.48 Aligned_cols=61 Identities=8% Similarity=0.100 Sum_probs=35.2
Q ss_pred HHHHHHHHhHHHHHHHhhcCCcccc-h--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHhH
Q 006199 43 NRFVAIFAVPLLSFHFISTNDPYAM-N--FRFIAADTLQKIIMLFVLGIWTNFTKNGSLEWMITIF 105 (657)
Q Consensus 43 nkFV~~~ALPaLLF~~iA~~dl~~l-~--~~filAy~l~~livfll~~l~ar~~~~~~l~~~aav~ 105 (657)
.+.+-.+++=.++.-++++.++.++ + ..+++...++.+++.+..+++..+..++ ||.+++.
T Consensus 277 i~~I~~~sL~~fl~~almsl~l~~l~~~a~Plliil~~q~i~~~~f~~fv~fr~~gk--dydaavm 340 (368)
T PF03616_consen 277 IDRISGISLDLFLAMALMSLKLWVLADYALPLLIILAVQTILMVLFAYFVTFRVMGK--DYDAAVM 340 (368)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCC--ChhHHHH
Confidence 3456677777888999999998887 4 2334444555554444333333223333 5555553
No 64
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=30.38 E-value=9.2e+02 Score=29.88 Aligned_cols=85 Identities=9% Similarity=-0.052 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHH-HHhHHHHHHHHHhhhcccchhhhhcc--chHHHHHHHHHHHHHH
Q 006199 511 NPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISIL-SDAGLGMAMFSLGLFMALQPKIIACG--NSVATFSMAVRFLTGP 587 (657)
Q Consensus 511 NP~IiAilLGLilsll~~r~gi~LP~~L~~~L~~L-g~aa~PLALfvIG~sLa~~~k~~~~~--~k~vl~i~~iKLIl~P 587 (657)
++.+=|.++|+++. +-+.-..+.+-++.+ ...-.|+=.+.+|+.+.... . ... +..+..++++.++.--
T Consensus 294 ~~ilGAFlaGl~lp------~~~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~-l-~~~~~~~~~~~liv~a~~gK~ 365 (832)
T PLN03159 294 HSVFGAFVFGLVIP------NGPLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTK-I-QGPATWGLLVLVIIMASAGKI 365 (832)
T ss_pred cHHHHHHHHhhccC------CcchHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHH-h-cCchHHHHHHHHHHHHHHHHH
Confidence 55566666666533 111113344444444 56788999999999887742 1 111 2222222333333333
Q ss_pred HHHHHHHHHhCCChHH
Q 006199 588 AVMAAASIAVGLRGTL 603 (657)
Q Consensus 588 LLv~ll~~l~gL~~~~ 603 (657)
+..++.+++++++...
T Consensus 366 ~g~~l~a~~~g~~~~e 381 (832)
T PLN03159 366 MGTIIIAFFYTMPFRE 381 (832)
T ss_pred HHHHHHHHHhCCCHHH
Confidence 3445555677777543
No 65
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=30.37 E-value=3.3e+02 Score=31.14 Aligned_cols=102 Identities=10% Similarity=0.022 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHhhhccccC---hhhhhHHHHHHHHHHhHHHHHH-HhhcCCcccc----hHHHHHHHHHHHHHHHHHH
Q 006199 15 VPLYVAMILAYGSVRWWKIFS---PDQCSGINRFVAIFAVPLLSFH-FISTNDPYAM----NFRFIAADTLQKIIMLFVL 86 (657)
Q Consensus 15 lPIFlLI~LGYla~R~~glfs---~e~~~gLnkFV~~~ALPaLLF~-~iA~~dl~~l----~~~filAy~l~~livfll~ 86 (657)
+|-|+.+.+=-...|..++++ ++.++...+|+.+--.|++++- .++-+|++++ ++.+++......+.+.+..
T Consensus 271 ih~~a~mIi~~~i~K~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a 350 (414)
T PF03390_consen 271 IHAYAWMIILVAIVKAFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLATVLGAVIGA 350 (414)
T ss_pred CcHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhcCCCcchhhHhHhh-h--ccCCcceehH
Q 006199 87 GIWTNFTKNGSLEWMITIFSL-S--TLPNTLVMGI 118 (657)
Q Consensus 87 ~l~ar~~~~~~l~~~aav~~L-s--sfsNtgfmGi 118 (657)
++..++.+--..| +++-+= | ..+-||-+++
T Consensus 351 ~~vG~l~g~YPvE--sAItaGLC~an~GGtGDvAV 383 (414)
T PF03390_consen 351 FLVGKLVGFYPVE--SAITAGLCMANMGGTGDVAV 383 (414)
T ss_pred HHHHHHhCCChHH--HHHHhhhcccCCCCCCcchh
No 66
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=29.14 E-value=8.4e+02 Score=27.20 Aligned_cols=47 Identities=30% Similarity=0.477 Sum_probs=36.3
Q ss_pred HHHHhccChhhhHHHH-------HHHcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 006199 607 AIVQAALPQGIVPFVF-------AKEYNVHPAILSTAVIFGMLIALPITLVYYI 653 (657)
Q Consensus 607 ~VL~AAmP~Av~s~If-------A~~Yg~d~elaSsaVllSTLLSLptiil~~~ 653 (657)
-.+..++|....++.+ ++.|+.|++....++.+++++.+.+.++|.+
T Consensus 184 ~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl~w~~ 237 (394)
T PF03222_consen 184 SYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYLLWVF 237 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444778887777654 6789999999999999999988776666643
No 67
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=28.69 E-value=8.6e+02 Score=27.18 Aligned_cols=53 Identities=21% Similarity=0.143 Sum_probs=41.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHH-hHHHHHHHHHhhhcccc
Q 006199 507 KLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSD-AGLGMAMFSLGLFMALQ 564 (657)
Q Consensus 507 kllrNP~IiAilLGLilsll~~r~gi~LP~~L~~~L~~Lg~-aa~PLALfvIG~sLa~~ 564 (657)
.+=-++.+=|.++|++++-+ ...- +-+.+-++-+++ --.|+=.+.+|+.+...
T Consensus 240 ~~gls~ilGAFlaGl~ls~~----~~~~-~~l~~~i~~~~~~~fiplFFi~vG~~~dl~ 293 (397)
T COG0475 240 LLGLSMILGAFLAGLLLSES----EYRK-HELEEKIEPFGDGLFIPLFFISVGMSLDLG 293 (397)
T ss_pred HhChhHHHHHHHHHHHhccc----ccch-HHHHHHHHhHHhHHHHHHHHHHhhHHcCHH
Confidence 33457778888889988865 2211 578889999999 99999999999999875
No 68
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=28.39 E-value=8.9e+02 Score=27.22 Aligned_cols=81 Identities=11% Similarity=0.135 Sum_probs=47.9
Q ss_pred HHHHHhhhcccch-----hhhhccchHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhccChhhh-HHHHHHHc
Q 006199 553 AMFSLGLFMALQP-----KIIACGNSVATFSMAVRFLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIV-PFVFAKEY 626 (657)
Q Consensus 553 ALfvIG~sLa~~~-----k~~~~~~k~vl~i~~iKLIl~PLLv~ll~~l~gL~~~~~~V~VL~AAmP~Av~-s~IfA~~Y 626 (657)
+..++|+.+...- ...+..|.....+++.=+.+.-++.|++.+.-.+|+.. -+.+++|-+.. -..+|++|
T Consensus 63 ~q~ilG~~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~T----a~~gs~PGgas~m~~iA~d~ 138 (352)
T COG3180 63 GQVILGIMIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGWLLKRFSILPGNT----AFLGSSPGGASAMVSIAQDY 138 (352)
T ss_pred HHHHHHHHHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcch----hhHhcCCchHHHHHHHHHHh
Confidence 4445555555431 11123455555566666666666666666544566554 34577888544 45679999
Q ss_pred CCChhHHHHHH
Q 006199 627 NVHPAILSTAV 637 (657)
Q Consensus 627 g~d~elaSsaV 637 (657)
|.|...+|.+=
T Consensus 139 gAd~~~VAl~Q 149 (352)
T COG3180 139 GADLRLVALMQ 149 (352)
T ss_pred CCChhHHHHHH
Confidence 99988876543
No 69
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=27.00 E-value=4.3e+02 Score=29.97 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=24.5
Q ss_pred HHhccChhhhHHHHHHHcCCChhHHHHHHHHHHHH
Q 006199 609 VQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLI 643 (657)
Q Consensus 609 L~AAmP~Av~s~IfA~~Yg~d~elaSsaVllSTLL 643 (657)
+..+.=.|....++..++|.|+..++. .++||+.
T Consensus 398 ~~~~~~~G~~lp~~~~k~~~DPa~~s~-p~itt~~ 431 (449)
T TIGR00400 398 LTVAKILGGLLPIVAKLLKLDPALMSG-PLITTIA 431 (449)
T ss_pred HHHHHHHHHHHHHHHHHcCCChhhhhh-hHHHHHH
Confidence 334445567778889999999988664 6667764
No 70
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=26.93 E-value=4.2e+02 Score=29.31 Aligned_cols=47 Identities=23% Similarity=0.222 Sum_probs=37.5
Q ss_pred CCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhccchHHHHHHH
Q 006199 533 SMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMA 580 (657)
Q Consensus 533 ~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~k~~~~~~k~vl~i~~ 580 (657)
.+|+.+.+.++.+++-..-+||..+|+...... .++.++|..+...+
T Consensus 269 ~lp~~~~~~l~~~~~~ll~~AmaaiGl~t~~~~-l~~~G~kp~~~g~i 315 (335)
T TIGR00698 269 LLPGEVVQALVPLDTFLLATAMAALGLTTNVSA-VKKAGVKPLFASYA 315 (335)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHhhcCcHHH-HHHcCchHHHHHHH
Confidence 478889999999999999999999999999863 44556666555433
No 71
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=26.87 E-value=7.9e+02 Score=26.14 Aligned_cols=105 Identities=11% Similarity=0.051 Sum_probs=59.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHH-HHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhccchHHHHHHH
Q 006199 502 IMVWRKLIRNPNTYSSLIGLVW-SLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMA 580 (657)
Q Consensus 502 ~~vlkkllrNP~IiAilLGLil-sll~~r~gi~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~k~~~~~~k~vl~i~~ 580 (657)
+.++.+++ |++.-+.+|.++ .-. ++--.+.....-+++=+.+.|+.+|.-=..-.... .............
T Consensus 4 ~~~~~~il--pv~~ii~lG~~~~~r~----~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~--~~~~~~~~~~~~~ 75 (321)
T TIGR00946 4 YVILETVL--PILVVILLGYILGKRF----GILDEEHASGINRFVINFALPLTIFHSISTTLADI--LQKSQSPVVLFLW 75 (321)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 34455444 888999999998 566 65555667777778888888988887544322110 0011112222223
Q ss_pred HHHHHHHHHHHHHHH-HhCCChHHHHHHHHHhccC
Q 006199 581 VRFLTGPAVMAAASI-AVGLRGTLLHVAIVQAALP 614 (657)
Q Consensus 581 iKLIl~PLLv~ll~~-l~gL~~~~~~V~VL~AAmP 614 (657)
.-+++.-++.+++.. +++.|........+.++.+
T Consensus 76 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (321)
T TIGR00946 76 GAFSGSYALIWLITKPLFKADYGKLSGFLLVSALP 110 (321)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchhhHHHHHhhhc
Confidence 333444455555555 5566665555555555544
No 72
>PRK04972 putative transporter; Provisional
Probab=26.78 E-value=1.1e+03 Score=27.85 Aligned_cols=73 Identities=15% Similarity=0.159 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccch----hhhhccchHHHHHHHHHHHHHHHHHHHH
Q 006199 518 LIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQP----KIIACGNSVATFSMAVRFLTGPAVMAAA 593 (657)
Q Consensus 518 lLGLilsll~~r~gi~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~----k~~~~~~k~vl~i~~iKLIl~PLLv~ll 593 (657)
+.|+++..+ +..+|..+. ...++||+-..-+..-+ ..++..++..+.. ++=.++.-++++.+
T Consensus 45 ~vgl~~g~~----~~~~~~~~~---------~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~~~~-~~~~~~~~~~~~~~ 110 (558)
T PRK04972 45 VVSLLLGQQ----HFSINTDAL---------NLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLA-LVMVGSALVIALGL 110 (558)
T ss_pred HHHHHHHhC----CCCCChHHH---------HHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHH
Confidence 344444444 666666542 35566665544443322 1222233333332 22223333445555
Q ss_pred HHHhCCChHHH
Q 006199 594 SIAVGLRGTLL 604 (657)
Q Consensus 594 ~~l~gL~~~~~ 604 (657)
.++++++....
T Consensus 111 ~~~~~~~~~~~ 121 (558)
T PRK04972 111 GKLFGWDIGLT 121 (558)
T ss_pred HHHhCCCHHHH
Confidence 67899986543
No 73
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=25.87 E-value=62 Score=30.42 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006199 69 FRFIAADTLQKIIMLFVLGIWTN 91 (657)
Q Consensus 69 ~~filAy~l~~livfll~~l~ar 91 (657)
|.+++.+++..++++++++...+
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~r 24 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHNR 24 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHH
Confidence 55555555544444443333333
No 74
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=23.96 E-value=1.4e+02 Score=23.45 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=19.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH
Q 006199 502 IMVWRKLIRNPNTYSSLIGLVWSLI 526 (657)
Q Consensus 502 ~~vlkkllrNP~IiAilLGLilsll 526 (657)
+...-.++.-|+++|+++|+++.+-
T Consensus 3 kSl~fa~iMVPVvma~ilglIyGlG 27 (41)
T PF10766_consen 3 KSLAFAVIMVPVVMALILGLIYGLG 27 (41)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566778999999999998875
No 75
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=23.19 E-value=2.8e+02 Score=30.20 Aligned_cols=136 Identities=13% Similarity=0.083 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHhHhh-hccccChhhhhHHH---HHHHHHHhHHHHHHHhhcCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 006199 14 VVPLYVAMILAYGSVR-WWKIFSPDQCSGIN---RFVAIFAVPLLSFHFISTNDPYAMNFRFIAADTLQKIIMLFVLGIW 89 (657)
Q Consensus 14 ilPIFlLI~LGYla~R-~~glfs~e~~~gLn---kFV~~~ALPaLLF~~iA~~dl~~l~~~filAy~l~~livfll~~l~ 89 (657)
+-++.+.|.+|.+.+. . --.++...+++. |.++++++=+|=|+.-.+ ++.++-+.-++...+....++.+.++.
T Consensus 26 l~~~~~AillG~~i~n~~-~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~-~i~~~G~~~~~~~~~~v~~~~~~~~~l 103 (305)
T PF03601_consen 26 LGALLIAILLGMLIGNLF-FGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFS-DILALGWKGLLIIIIVVILTFLLTYWL 103 (305)
T ss_pred ccHHHHHHHHHHHHhhhc-cCCcHHHHhHHHHHHHHHHHHHHHHHCccccHH-HHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 3466788889999886 4 334454445554 677777776666553222 222232333444444555555555555
Q ss_pred H-HHhcCCCcchhhHhHhh--hccCCcceehHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006199 90 T-NFTKNGSLEWMITIFSL--STLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEY 154 (657)
Q Consensus 90 a-r~~~~~~l~~~aav~~L--ssfsNtgfmGiPLl~alfG~~a~~~lalivvv~~ill~tl~l~L~E~ 154 (657)
. |+.+-. .+. +.+.+- +.++++..+..-=+...=. +...+....+.+.+.+.+.+...+.+.
T Consensus 104 g~r~~~l~-~~~-~~Lia~GtsICG~SAi~A~a~~i~a~~-~~~a~ava~V~lfg~vam~~~P~l~~~ 168 (305)
T PF03601_consen 104 GRRLFGLD-RKL-AILIAAGTSICGASAIAATAPVIKAKE-EDVAYAVATVFLFGTVAMFLYPLLGHA 168 (305)
T ss_pred HHHHhCCC-HHH-HHHHHhhcccchHHHHHHHcccccCCC-CceeeeehHHHHHHHHHHHHHHHHHHH
Confidence 5 443322 221 444444 4667777666654444433 344454555555555555555555554
No 76
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=23.07 E-value=2e+02 Score=29.71 Aligned_cols=62 Identities=11% Similarity=0.135 Sum_probs=30.3
Q ss_pred CCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhccchHHHHHHHHHHHHHHHHHHHHH
Q 006199 532 VSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMAAAS 594 (657)
Q Consensus 532 i~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~k~~~~~~k~vl~i~~iKLIl~PLLv~ll~ 594 (657)
+.+|++..+.=..=-..+.++.++.+|..+....... .....++.++++=++..|+...+++
T Consensus 28 lRfPD~YtRLHAATKa~TLGv~LILlgv~l~~~~~~~-~~slklLLiIvFllLTaPVaSHaIA 89 (197)
T PRK12585 28 IRLPDVYTRTHAAGISNTFGVSLLLFATVGYFFHSGE-GFNARVLLAVLFIFLTTPVASHLIN 89 (197)
T ss_pred HhcCcHHHHhhccccchhhhHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789877665333333445566666775554321000 0111233333444666666666554
No 77
>TIGR03109 exosortase_1 exosortase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. We designate this, the most common type so far, exosortase 1. We propose the gene symbol xrtA, analogous to srtA for the most common type of sortase in Gram-positive bacteria.
Probab=22.15 E-value=4e+02 Score=28.46 Aligned_cols=89 Identities=11% Similarity=0.081 Sum_probs=58.7
Q ss_pred CCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhh---hccchHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHH
Q 006199 531 HVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKII---ACGNSVATFSMAVRFLTGPAVMAAASIAVGLRGTLLHVA 607 (657)
Q Consensus 531 gi~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~k~~---~~~~k~vl~i~~iKLIl~PLLv~ll~~l~gL~~~~~~V~ 607 (657)
-+|+|+.+...++.+..-.+-..|-..|.-..+..... .....-.-.+..+|.++.=+..-.+...+-..+...++.
T Consensus 127 ~vP~p~~l~~pLq~~ta~~~~~~L~~~Gipv~~eG~~I~l~~g~~~Va~aCSGlr~l~~~~~l~~l~~~l~~~~~~~r~~ 206 (267)
T TIGR03109 127 AVPVGDFLIPPLQDITAFFTVALLSATGIPVYREGVFIHIPSGTFEVAEACSGLRYLIASLAIGALYAYLNFRSIKRRLL 206 (267)
T ss_pred HcCCHHHHhhHHHHHHHHHHHHHHHHcCCCEEEeeeEEEECCEEEEEeCCCCCHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 67899999999999999999999999998776642111 111222234667887664333323322233455667888
Q ss_pred HHHhccChhhhH
Q 006199 608 IVQAALPQGIVP 619 (657)
Q Consensus 608 VL~AAmP~Av~s 619 (657)
++.++.|.++..
T Consensus 207 l~~~ai~iai~a 218 (267)
T TIGR03109 207 FFLVSIIVPILA 218 (267)
T ss_pred HHHHHHHHHHHH
Confidence 888999987654
No 78
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=21.94 E-value=5.9e+02 Score=29.11 Aligned_cols=90 Identities=10% Similarity=0.006 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhHhhhccccCh---hhhhHHHHHHHHHHhHHHHH-HHhhcCCcccc----hHHHHHHHHHHHHHHHHHHH
Q 006199 16 PLYVAMILAYGSVRWWKIFSP---DQCSGINRFVAIFAVPLLSF-HFISTNDPYAM----NFRFIAADTLQKIIMLFVLG 87 (657)
Q Consensus 16 PIFlLI~LGYla~R~~glfs~---e~~~gLnkFV~~~ALPaLLF-~~iA~~dl~~l----~~~filAy~l~~livfll~~ 87 (657)
|+-++|.+-.++.-. ++.++ |..+.+++|..+=..=+|++ -.++-+|++++ .|.+++....-.+.+-..++
T Consensus 292 ~va~MIil~a~lk~~-nlvp~~i~~GA~~l~~F~sk~~t~~Lm~giGv~ytdl~ev~~alt~~~vii~~~vVl~~i~~~~ 370 (438)
T COG3493 292 PVAFMIILVAILKAA-NLVPKEIEEGAKQLSQFFSKNLTWPLMAGIGVAYTDLNEVAAALTWQNVIIALSVVLGAILGGA 370 (438)
T ss_pred hHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccHHHHHHHhchhHHHHHHHHHHHHHHHHH
Confidence 444566666667666 88885 46777888887655444444 57877898876 67777766554444444455
Q ss_pred HHHHHhcCCCcchhhHhHh-hh
Q 006199 88 IWTNFTKNGSLEWMITIFS-LS 108 (657)
Q Consensus 88 l~ar~~~~~~l~~~aav~~-Ls 108 (657)
+..|+..--+.| +++.+ +|
T Consensus 371 f~grl~~~YPVE--aAI~aglC 390 (438)
T COG3493 371 FVGRLMGFYPVE--AAITAGLC 390 (438)
T ss_pred HHHHHhcCCchH--HHHHHhHH
Confidence 666655433334 44444 54
No 79
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=21.91 E-value=82 Score=32.27 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHhHHHHHHHhhcCCcccc---hHHH
Q 006199 39 CSGINRFVAIFAVPLLSFHFISTNDPYAM---NFRF 71 (657)
Q Consensus 39 ~~gLnkFV~~~ALPaLLF~~iA~~dl~~l---~~~f 71 (657)
.+.|.-+..-| +|+-+..++..+|+..+ +|.+
T Consensus 234 m~~LT~~t~if-lPlt~i~g~fGMN~~~~p~~~~~~ 268 (292)
T PF01544_consen 234 MKVLTIVTAIF-LPLTFITGIFGMNFKGMPELDWPY 268 (292)
T ss_dssp HHHHHHHHHHH-HHHHHHTTSTTS-SS---SSSSSS
T ss_pred HHHHHHHHHHH-HHHHHHHHHhhCCccCCCccCCcc
Confidence 34444344444 99999999999988855 4554
No 80
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=21.12 E-value=1.3e+03 Score=26.72 Aligned_cols=83 Identities=17% Similarity=0.142 Sum_probs=42.9
Q ss_pred HhhHHHH-HHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhccchHHHHHHHHHHHHHH
Q 006199 509 IRNPNTY-SSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGP 587 (657)
Q Consensus 509 lrNP~Ii-AilLGLilsll~~r~gi~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~k~~~~~~k~vl~i~~iKLIl~P 587 (657)
++-|..+ -+++|+++...+....+++.+. .+-....|.-||..|..+.... .++.++.+....+.= ++.+
T Consensus 20 ~~lP~~v~lil~Gi~lg~~~~~~~~~~~~~------~~~~~~Lp~lLF~~g~~~~~~~--l~~~~~~i~~la~~~-vlit 90 (525)
T TIGR00831 20 IRLPYPIALILAGLLLGLAGLLPEVPLDRE------IVLFLFLPPLLFEAAMNTDLRE--LRENFRPIALIAFLL-VVVT 90 (525)
T ss_pred cCCCHHHHHHHHHHHHHhccccCCCCCCHH------HHHHHHHHHHHHHHHhcCCHHH--HHHHHHHHHHHHHHH-HHHH
Confidence 4566644 4455777775422112333322 2233688999999999988752 334444444433333 3334
Q ss_pred HHHHH-HH-HHhCCC
Q 006199 588 AVMAA-AS-IAVGLR 600 (657)
Q Consensus 588 LLv~l-l~-~l~gL~ 600 (657)
.+... +. ++++++
T Consensus 91 ~~~v~~~~~~~~~l~ 105 (525)
T TIGR00831 91 TVVVGFSLNWILGIP 105 (525)
T ss_pred HHHHHHHHHHHhccc
Confidence 33322 22 345554
No 81
>PRK10472 low affinity gluconate transporter; Provisional
Probab=20.45 E-value=1.3e+03 Score=26.50 Aligned_cols=37 Identities=24% Similarity=0.477 Sum_probs=31.3
Q ss_pred hccChhhhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHH
Q 006199 611 AALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLV 650 (657)
Q Consensus 611 AAmP~Av~s~IfA~~Yg~d~elaSsaVllSTLLSLptiil 650 (657)
+-+|+--.+...|..+|.| ...+++++.++++|++++
T Consensus 156 ~~vPP~Pgp~a~a~~l~ad---lG~~il~Glivaip~~~i 192 (445)
T PRK10472 156 AFLLPGPAPMLLASQMNAD---FGWMILIGLCAAIPGMII 192 (445)
T ss_pred cccCCCcHHHHHHHHhCCC---HHHHHHHHHHHHHHHHHH
Confidence 3489999999999999998 567899999999988554
Done!