Query 006199
Match_columns 657
No_of_seqs 362 out of 1498
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 18:39:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006199.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006199hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 99.1 1E-09 3.5E-14 115.7 17.1 146 501-655 9-155 (332)
2 3zux_A Transporter, ASBTNM; tr 94.7 0.38 1.3E-05 50.5 14.1 123 17-147 175-306 (332)
3 2zy9_A Mg2+ transporter MGTE; 64.0 1.5E+02 0.005 32.2 15.9 94 551-645 357-456 (473)
4 4ev6_A Magnesium transport pro 22.7 85 0.0029 32.4 5.1 39 37-75 274-319 (339)
5 3rhw_A Avermectin-sensitive gl 15.1 4.1E+02 0.014 27.2 8.2 67 8-79 215-283 (347)
6 2iub_A CORA, divalent cation t 12.4 1.3E+02 0.0046 31.2 3.6 21 47-67 310-330 (363)
7 2kdc_A Diacylglycerol kinase; 8.9 7.5E+02 0.026 22.1 6.8 22 630-651 94-115 (121)
8 3if4_A Integron cassette prote 7.4 1.4E+02 0.0047 26.8 1.1 18 189-206 25-42 (119)
9 3rlb_A THIT; S-component, ECF 7.1 1.1E+03 0.037 22.6 7.6 38 508-545 58-96 (192)
10 1q5l_A Chaperone protein DNAK; 6.6 3.7E+02 0.012 24.1 3.7 40 170-209 80-119 (135)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=99.12 E-value=1e-09 Score=115.69 Aligned_cols=146 Identities=16% Similarity=0.151 Sum_probs=118.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccch-hhhhccchHHHHHH
Q 006199 501 LIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQP-KIIACGNSVATFSM 579 (657)
Q Consensus 501 l~~vlkkllrNP~IiAilLGLilsll~~r~gi~LP~~L~~~L~~Lg~aa~PLALfvIG~sLa~~~-k~~~~~~k~vl~i~ 579 (657)
++++. +.+.++..+.++++.++..+ .|+... .++..-..+.++.||.+|+.+...+ +....+++......
T Consensus 9 l~~~~-~~l~~~~~l~i~~~~~lg~~-------~P~~~~-~~~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l 79 (332)
T 3zux_A 9 LSKIS-SFIGKTFSLWAALFAAAAFF-------APDTFK-WAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGV 79 (332)
T ss_dssp HHHHH-HHHHHTHHHHHHHHHHHHHH-------CGGGTG-GGGGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHH-------cchhhh-hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHH
Confidence 44444 45678889999999888877 343221 1333345678899999999999864 11224667778889
Q ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhccChhhhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006199 580 AVRFLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVYYIVL 655 (657)
Q Consensus 580 ~iKLIl~PLLv~ll~~l~gL~~~~~~V~VL~AAmP~Av~s~IfA~~Yg~d~elaSsaVllSTLLSLptiil~~~LL 655 (657)
+.+++++|+++++++.++++++.....+++.+++|+++.+.+++..+|.|.+.+...+.++|++++.++++|..++
T Consensus 80 ~~~~vi~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~ 155 (332)
T 3zux_A 80 IAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLML 155 (332)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999987777776553
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=94.73 E-value=0.38 Score=50.47 Aligned_cols=123 Identities=10% Similarity=0.031 Sum_probs=67.2
Q ss_pred HHHHHHHHHhHhhhccccChhhhhHHHHHHHHHHhHHHHH---HHhhcCCcccc---hHHHHHHHHHHHHHHHHHHHHHH
Q 006199 17 LYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSF---HFISTNDPYAM---NFRFIAADTLQKIIMLFVLGIWT 90 (657)
Q Consensus 17 IFlLI~LGYla~R~~glfs~e~~~gLnkFV~~~ALPaLLF---~~iA~~dl~~l---~~~filAy~l~~livfll~~l~a 90 (657)
+.+=+++|.+.+++++-. .+.+.+..-.++..++++ ..++. +.+.+ .+..+++..+-.++.|+++++.+
T Consensus 175 vllP~~lG~l~r~~~~~~----~~~~~~~l~~~s~~~illiv~~~~~~-~~~~~~~~~~~v~~~~~l~~~~~~~lg~~~~ 249 (332)
T 3zux_A 175 VLLPIVLGLIVHKVLGSK----TEKLTDALPLVSVAAIVLIIGAVVGA-SKGKIMESGLLIFAVVVLHNGIGYLLGFFAA 249 (332)
T ss_dssp THHHHHHHHHHHHHHGGG----GHHHHTTHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHHHHHhHHHHHh-hhHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344467788877763322 233334333344444333 23332 22222 23344444444556666666666
Q ss_pred HHhcCCCcchhhHhHhh-hccCCcceehHHHHHHHhh--cchhhHHHHHHHHHHHHHHHH
Q 006199 91 NFTKNGSLEWMITIFSL-STLPNTLVMGIPLLIAMYG--EYSGSLMVQVVVLQCIIWYTL 147 (657)
Q Consensus 91 r~~~~~~l~~~aav~~L-ssfsNtgfmGiPLl~alfG--~~a~~~lalivvv~~ill~tl 147 (657)
|+.+....+ ....++ ++.-|++ +|++++...|| +....+.+.+.+.|++.-..+
T Consensus 250 r~~~~~~~~--~~ti~~e~G~qNs~-lai~lA~~~F~~~p~~alp~~iy~~~q~i~~~~l 306 (332)
T 3zux_A 250 KWTGLPYDA--QKALTIEVGMQNSG-LAAALAAAHFAAAPVVAVPGALFSVWHNISGSLL 306 (332)
T ss_dssp HHTTCCHHH--HHHHHHHHHCCCHH-HHHHHHHHHSTTCGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHhH--hhhhhhhhhhccHH-HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 655433112 333455 5667885 99999999994 456677777777777655333
No 3
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=64.05 E-value=1.5e+02 Score=32.19 Aligned_cols=94 Identities=12% Similarity=-0.026 Sum_probs=54.3
Q ss_pred HHHHHHHhhhcccch--hhhhccchHHHHHHHHHHHHHHHHHHHHHHHhCCC----hHHHHHHHHHhccChhhhHHHHHH
Q 006199 551 GMAMFSLGLFMALQP--KIIACGNSVATFSMAVRFLTGPAVMAAASIAVGLR----GTLLHVAIVQAALPQGIVPFVFAK 624 (657)
Q Consensus 551 PLALfvIG~sLa~~~--k~~~~~~k~vl~i~~iKLIl~PLLv~ll~~l~gL~----~~~~~V~VL~AAmP~Av~s~IfA~ 624 (657)
-.++++=|+.+.... ...+.-+|++...+++=+++..++....+++++.. -....++.+..|.=.|+...++..
T Consensus 357 ~~t~~ir~la~~~~~~~~~~~~~~ke~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~a~~~g~~~p~~~~ 436 (473)
T 2zy9_A 357 SATLIIRALATRDLDLRDWRRVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLVGAMLPFLLR 436 (473)
T ss_dssp HHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555565555432 11122345666666666666665555554555511 012233344455667788889999
Q ss_pred HcCCChhHHHHHHHHHHHHHH
Q 006199 625 EYNVHPAILSTAVIFGMLIAL 645 (657)
Q Consensus 625 ~Yg~d~elaSsaVllSTLLSL 645 (657)
++|.||..+++ .++||+.=+
T Consensus 437 ~~~~DPa~~s~-p~itt~~D~ 456 (473)
T 2zy9_A 437 RLGVDPALVSN-PLVATLSDV 456 (473)
T ss_dssp HHTCCGGGSCH-HHHHHHHHH
T ss_pred HcCCCcccccc-chHHHHHHH
Confidence 99999998664 677776443
No 4
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=22.66 E-value=85 Score=32.35 Aligned_cols=39 Identities=8% Similarity=-0.141 Sum_probs=24.0
Q ss_pred hhhhHHHHHH--HHHHhHHHHHHHhhcCCcccc---h--HHHHHHH
Q 006199 37 DQCSGINRFV--AIFAVPLLSFHFISTNDPYAM---N--FRFIAAD 75 (657)
Q Consensus 37 e~~~gLnkFV--~~~ALPaLLF~~iA~~dl~~l---~--~~filAy 75 (657)
++.+.+..|- --+.+|.-+..++..+|+..+ + ++|+++.
T Consensus 274 ~~N~~mk~LTiit~IflP~T~IaGiyGMNf~~mPel~~~~gy~~~l 319 (339)
T 4ev6_A 274 KMNQIMKILTMVTTIFAVPMWITGIYGMNFSYLPLANNPQGFWLVM 319 (339)
T ss_dssp HHHHHHHHHHHHHHHSSHHHHHHHHTTCCCSCCTTSSCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCcCCCCCCccCchHHHHHH
Confidence 3344444433 335578888999999998754 3 4555443
No 5
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=15.13 E-value=4.1e+02 Score=27.17 Aligned_cols=67 Identities=9% Similarity=0.066 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhccccChhhh-hHHHHHHHHHHhHHHHHHHhhcCCcccc-hHHHHHHHHHHH
Q 006199 8 YLVLTAVVPLYVAMILAYGSVRWWKIFSPDQC-SGINRFVAIFAVPLLSFHFISTNDPYAM-NFRFIAADTLQK 79 (657)
Q Consensus 8 ~~Il~~ilPIFlLI~LGYla~R~~glfs~e~~-~gLnkFV~~~ALPaLLF~~iA~~dl~~l-~~~filAy~l~~ 79 (657)
+-+++.++|.++++++-+++-+ ++++.. +-+ .+-+...|=...|..+....+... ....+..|++.+
T Consensus 215 ~y~~~l~iP~~li~~ls~~sF~----lp~~~~~~Rv-~lgit~lLt~tv~~~~~~~~lP~~S~v~~id~~~~~~ 283 (347)
T 3rhw_A 215 FYLLQLYIPSCMLVIVSWVSFW----FDRTAIPARV-TLGVTTLLTMTAQSAGINSQLPPVSYIKAIDVWIGAC 283 (347)
T ss_dssp HHHHHTHHHHHHHHHHHHTTTT----SCTTCHHHHH-HHHHHHHHHHHHHHHHHHHTSCCCSSCCHHHHHHHHH
T ss_pred EEEEEeehhHHHHHHHhheEEe----ccCCCCcceE-EEEeehHHHHHHHHHHHHhhCCCccceeHHHHHHHHH
Confidence 5678899999999999988876 455542 222 233334444444444333333333 334444444433
No 6
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=12.38 E-value=1.3e+02 Score=31.18 Aligned_cols=21 Identities=24% Similarity=0.021 Sum_probs=11.4
Q ss_pred HHHHhHHHHHHHhhcCCcccc
Q 006199 47 AIFAVPLLSFHFISTNDPYAM 67 (657)
Q Consensus 47 ~~~ALPaLLF~~iA~~dl~~l 67 (657)
--+.+|.-+..++...|+..+
T Consensus 310 t~IflP~T~IaGiyGMNf~~m 330 (363)
T 2iub_A 310 ATIFMPLTFIAGIYGMNFEYM 330 (363)
T ss_dssp HHHHHHHHHHTTSCC------
T ss_pred HHHHHHHHHHHhhhcccCCCC
Confidence 345578888888888888755
No 7
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=8.87 E-value=7.5e+02 Score=22.13 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 006199 630 PAILSTAVIFGMLIALPITLVY 651 (657)
Q Consensus 630 ~elaSsaVllSTLLSLptiil~ 651 (657)
.|.+|.+|+++.+.++.+..+.
T Consensus 94 KD~aaaAVlv~~~~a~~v~~~i 115 (121)
T 2kdc_A 94 KDMGSAAVLIAIIVAVITWCIL 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999988887665443
No 8
>3if4_A Integron cassette protein HFX_CASS5; integron cassette protein mobIle metagenome structural genomics PSI-2 protein structure initiative midwest center for structural genomics; HET: MSE; 2.18A {Unidentified}
Probab=7.44 E-value=1.4e+02 Score=26.78 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=14.9
Q ss_pred ccccccccCCCCceEEEE
Q 006199 189 FLETDAEIGDDGKLHVTV 206 (657)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~ 206 (657)
.+.+..|++++|+|||+-
T Consensus 25 e~ia~IEvd~~Grihv~p 42 (119)
T 3if4_A 25 EFVAAIEIDGTGRIHVTP 42 (119)
T ss_dssp EEEEEEEECTTSCEEEEE
T ss_pred HHHHHeeeccCCcEEEee
Confidence 455668999999999985
No 9
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=7.10 E-value=1.1e+03 Score=22.58 Aligned_cols=38 Identities=16% Similarity=0.278 Sum_probs=23.1
Q ss_pred HHhhHHHHHHHHHHHHHHHhhcCCCC-CcHHHHHHHHHH
Q 006199 508 LIRNPNTYSSLIGLVWSLIAFRWHVS-MPKIIEKSISIL 545 (657)
Q Consensus 508 llrNP~IiAilLGLilsll~~r~gi~-LP~~L~~~L~~L 545 (657)
-++.=+..|+++|+++.++.+-.+.. ...++...++++
T Consensus 58 a~~~Gp~~G~~~g~i~gll~~i~g~~~~~~p~q~lldy~ 96 (192)
T 3rlb_A 58 SLRRGLTAGLVGGLIWGILSMITGHAYILSLSQAFLEYL 96 (192)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHTTCSCCSSHHHHHHHHT
T ss_pred HHHHChHHHHHHHHHHHHHHHHhCCccccchHHHHHHHH
Confidence 45556678888888888874322322 334565566654
No 10
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1
Probab=6.64 E-value=3.7e+02 Score=24.12 Aligned_cols=40 Identities=28% Similarity=0.390 Sum_probs=27.5
Q ss_pred cccceeeecCcccccCCccccccccccCCCCceEEEEeec
Q 006199 170 ASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKS 209 (657)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (657)
-.+++|+++.---.-.|...++..-+++.||-|+|..+-.
T Consensus 80 ~~Lg~f~l~gipp~p~G~~~IeVtf~iD~nGiL~V~a~d~ 119 (135)
T 1q5l_A 80 KSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDK 119 (135)
T ss_dssp EEEEEEECCCCCSCCSSSCCEEEEEEECTTSEEEEEEEET
T ss_pred cEEEEEEEeCCCCCCCceeEEEEEEEECCCCEEEEEEEEC
Confidence 3466676654222223555688889999999999998744
Done!