Query 006199
Match_columns 657
No_of_seqs 362 out of 1498
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 18:39:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006199.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006199hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u00a2 b.130.1.1 (A:389-503) 17.8 47 0.0034 27.4 3.8 43 168-210 59-101 (115)
2 d1dkza2 b.130.1.1 (A:389-506) 14.9 57 0.0042 27.0 3.6 44 167-210 61-104 (118)
3 d2e74f1 f.23.25.1 (F:1-32) Pet 12.0 1E+02 0.0075 19.9 3.3 21 10-30 5-25 (32)
4 d2iuba2 f.17.3.1 (A:286-349) M 7.7 1.1E+02 0.0081 22.2 2.6 22 46-67 12-33 (64)
5 d1oedc_ f.36.1.1 (C:) Acetylch 7.6 1.3E+02 0.0092 26.7 3.5 24 7-30 2-25 (260)
6 d1xmeb2 f.17.2.1 (B:3-36) Bact 6.0 2.3E+02 0.017 18.2 3.1 17 71-87 15-31 (34)
7 d1oede_ f.36.1.1 (E:) Acetylch 5.5 93 0.0068 27.9 1.3 47 8-59 3-50 (260)
8 d1pw4a_ f.38.1.1 (A:) Glycerol 5.3 8.8E+02 0.064 21.2 15.9 17 14-30 296-312 (447)
9 d2nwwa1 f.49.1.1 (A:12-416) Pr 5.3 1E+03 0.075 22.1 9.4 32 53-84 200-233 (405)
10 d1oedb_ f.36.1.1 (B:) Acetylch 4.9 1.8E+02 0.013 25.6 2.9 24 7-30 2-25 (250)
No 1
>d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]}
Probab=17.85 E-value=47 Score=27.39 Aligned_cols=43 Identities=19% Similarity=0.260 Sum_probs=34.8
Q ss_pred cccccceeeecCcccccCCccccccccccCCCCceEEEEeecC
Q 006199 168 TAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKSN 210 (657)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (657)
...-++.|++++---.-.|..+++-.-+++.||.|+|.++-..
T Consensus 59 ~N~~lg~~~l~~ip~~p~G~~~I~Vtf~id~nGiL~V~A~d~~ 101 (115)
T d1u00a2 59 DCRSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKS 101 (115)
T ss_dssp GSEEEEEEEECCCCCCSTTCSCEEEEEEECTTCCEEEEEEETT
T ss_pred cceEeeEEEEeCcccCccccccEEEEEEccCCceEEEEEEECC
Confidence 3456788888776556678888999999999999999988764
No 2
>d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]}
Probab=14.93 E-value=57 Score=26.99 Aligned_cols=44 Identities=27% Similarity=0.381 Sum_probs=35.0
Q ss_pred ccccccceeeecCcccccCCccccccccccCCCCceEEEEeecC
Q 006199 167 ETAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKSN 210 (657)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (657)
+....++.|+++.---.-.|...++-.-+++.||.|+|.++-..
T Consensus 61 ~~n~~lg~~~i~~ip~~p~G~~~I~Vtf~iD~nGiL~V~a~d~~ 104 (118)
T d1dkza2 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKN 104 (118)
T ss_dssp GGSEEEEEEEEECCCSCCTTCSCEEEEEEECTTCCEEEEEEETT
T ss_pred cCceEEEEEEEcCCccCCCCCcEEEEEEEecCCCeEEEEEEECC
Confidence 34556888888866555667777999999999999999997764
No 3
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.97 E-value=1e+02 Score=19.93 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhh
Q 006199 10 VLTAVVPLYVAMILAYGSVRW 30 (657)
Q Consensus 10 Il~~ilPIFlLI~LGYla~R~ 30 (657)
+++..+--|.+|+.||..+..
T Consensus 5 il~aa~lsfglifvgwglgal 25 (32)
T d2e74f1 5 MLYAALLSFGLIFVGWGLGVL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhHHHHH
Confidence 556666778999999987654
No 4
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=7.71 E-value=1.1e+02 Score=22.22 Aligned_cols=22 Identities=23% Similarity=0.067 Sum_probs=12.0
Q ss_pred HHHHHhHHHHHHHhhcCCcccc
Q 006199 46 VAIFAVPLLSFHFISTNDPYAM 67 (657)
Q Consensus 46 V~~~ALPaLLF~~iA~~dl~~l 67 (657)
+--+.+|.-+..++...++..+
T Consensus 12 it~iflP~t~i~gifGMN~~~~ 33 (64)
T d2iuba2 12 IATIFMPLTFIAGIYGMNFEYM 33 (64)
T ss_dssp HHHHHHHHHHHTTSCC------
T ss_pred HHHHHHHHHHHHhhhccCCCCC
Confidence 4456688888888888877644
No 5
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=7.62 E-value=1.3e+02 Score=26.75 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhh
Q 006199 7 LYLVLTAVVPLYVAMILAYGSVRW 30 (657)
Q Consensus 7 M~~Il~~ilPIFlLI~LGYla~R~ 30 (657)
+|-+++.++|.+++.++-++.-+.
T Consensus 2 l~y~~n~~~P~~~~~~l~~~~f~l 25 (260)
T d1oedc_ 2 LFYVINFITPCVLISFLASLAFYL 25 (260)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEhHHHHHHHHHHHHHHHeee
Confidence 466889999999999998887663
No 6
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=5.96 E-value=2.3e+02 Score=18.20 Aligned_cols=17 Identities=18% Similarity=0.034 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006199 71 FIAADTLQKIIMLFVLG 87 (657)
Q Consensus 71 filAy~l~~livfll~~ 87 (657)
=|++|.++++.+|..++
T Consensus 15 gwlafslamlfvfiali 31 (34)
T d1xmeb2 15 GWLAFSLAMLFVFIALI 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 36677777777776544
No 7
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=5.53 E-value=93 Score=27.87 Aligned_cols=47 Identities=9% Similarity=0.121 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhccccChhh-hhHHHHHHHHHHhHHHHHHHh
Q 006199 8 YLVLTAVVPLYVAMILAYGSVRWWKIFSPDQ-CSGINRFVAIFAVPLLSFHFI 59 (657)
Q Consensus 8 ~~Il~~ilPIFlLI~LGYla~R~~glfs~e~-~~gLnkFV~~~ALPaLLF~~i 59 (657)
|-+++.++|.+++..+-++.-+. ++|. .+-++ +.+..-|=..+|..+
T Consensus 3 yY~~~lilP~~li~~ls~~~F~l----p~~~~g~Rv~-l~it~lLs~~~~~~~ 50 (260)
T d1oede_ 3 FYIINIIAPCVLISSLVVLVYFL----PAQAGGQKCT-LSISVLLAQTIFLFL 50 (260)
T ss_dssp SHHHHHHTHHHHHHHHHHHHHHH----HHTCCTTHHH-HHHHHHHHHHHHHHH
T ss_pred EEEEhHHHHHHHHHHHHHHheEe----cCCCCCCcEE-eehhHHHHHHHHHHH
Confidence 45788999999999998888774 4443 33322 444444444444433
No 8
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=5.32 E-value=8.8e+02 Score=21.18 Aligned_cols=17 Identities=6% Similarity=-0.017 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhHhhh
Q 006199 14 VVPLYVAMILAYGSVRW 30 (657)
Q Consensus 14 ilPIFlLI~LGYla~R~ 30 (657)
+.-++..+..|++..|.
T Consensus 296 ~~~~~~~~~~g~~~~~~ 312 (447)
T d1pw4a_ 296 YAGIPGTLLCGWMSDKV 312 (447)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhhhhhhhc
Confidence 33445556667777665
No 9
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=5.28 E-value=1e+03 Score=22.14 Aligned_cols=32 Identities=9% Similarity=0.004 Sum_probs=17.6
Q ss_pred HHHHHHhhcCCcccc--hHHHHHHHHHHHHHHHH
Q 006199 53 LLSFHFISTNDPYAM--NFRFIAADTLQKIIMLF 84 (657)
Q Consensus 53 aLLF~~iA~~dl~~l--~~~filAy~l~~livfl 84 (657)
+++...+++.+.+.+ -..|++.++++.++.++
T Consensus 200 ~l~a~~~~~~g~~~l~~l~~~~~~~~~~~~l~~~ 233 (405)
T d2nwwa1 200 ALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQIL 233 (405)
T ss_dssp HHHHHHHHHTGGGCCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 344445556666655 35566666666655433
No 10
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=4.87 E-value=1.8e+02 Score=25.59 Aligned_cols=24 Identities=21% Similarity=0.359 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhh
Q 006199 7 LYLVLTAVVPLYVAMILAYGSVRW 30 (657)
Q Consensus 7 M~~Il~~ilPIFlLI~LGYla~R~ 30 (657)
+|-+++.++|.+++..+-++.-+.
T Consensus 2 l~y~~~~~~P~~~i~~l~~~~f~~ 25 (250)
T d1oedb_ 2 LFYIVYTIIPCILISILAILVFYL 25 (250)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEeHHHHHHHHHHHHHHHhee
Confidence 356888999999999988877663
Done!