BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006200
(657 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GQ2|A Chain A, Crystal Structure Of The Dimer Of The P115 Tether Globular
Head Domain
pdb|3GQ2|B Chain B, Crystal Structure Of The Dimer Of The P115 Tether Globular
Head Domain
pdb|3GRL|A Chain A, Crystal Structure Of The Monomer Of The P115 Tether
Globular Head Domain
Length = 651
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 89/356 (25%), Positives = 154/356 (43%), Gaps = 36/356 (10%)
Query: 19 FTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVESQWA 78
++ QK NL L+ + +L+ + K + L+Q+ L +LM +
Sbjct: 272 WSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQ--LCTILM----ATGV 325
Query: 79 PVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAA 138
P + + +S++I N+D AS P A + ++ ++ A
Sbjct: 326 PADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAV 385
Query: 139 DRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVN-MSFGSMLIRGLTLGESDGDL 197
F F KN GQ + STL+P + ++ N +S G +L GL S L
Sbjct: 386 LYCFQCFLYKNQKGQGEIVSTLLP-------STIDATGNTVSAGQLLCGGLF---STDSL 435
Query: 198 EVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAE-PLMHRMVRYLALASSMKTK 256
C AA L+H L +N KE++LR++L S+G L+ + L+ S ++T+
Sbjct: 436 SNWC-AAVALAHALQENATQKEQLLRVQLAT---SIGNPPVSLLQQCTNILSQGSKIQTR 491
Query: 257 DGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELVSNPSA--TVCTRGLA 314
G +L LL TWL++CP AV FL + ++ +L ++ +GL
Sbjct: 492 VG----------LLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAENLGEEEQLVQGLC 541
Query: 315 AVLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQKSFLFSSA--KP 368
A+LLG + +N +S + I +++G ++ K + K L+S A KP
Sbjct: 542 ALLLGISIYFNDNSLETYMKEKLKQLIEKRIGKENFIEKLGFISKHELYSRASQKP 597
>pdb|2W3C|A Chain A, Globular Head Region Of The Human General Vesicular
Transport Factor P115
Length = 577
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 88/355 (24%), Positives = 152/355 (42%), Gaps = 34/355 (9%)
Query: 19 FTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVESQWA 78
++ QK NL L+ + +L+ + K + L+Q+ L +LM +
Sbjct: 220 WSAQKVTNLHLMLQLVRVLVSPTNPPGATSSCQKAMFQCGLLQQ--LCTILM----ATGV 273
Query: 79 PVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAA 138
P + + +S++I N+D AS P A + ++ ++ A
Sbjct: 274 PADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAV 333
Query: 139 DRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLE 198
F F KN GQ + STL+P + ++S G +L GL S L
Sbjct: 334 LYCFQCFLYKNQKGQGEIVSTLLPSTIDATGN------SVSAGQLLCGGLF---STDSLS 384
Query: 199 VCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAE-PLMHRMVRYLALASSMKTKD 257
C AA L+H L +N KE++LR++L S+G L+ + L+ S ++T+
Sbjct: 385 NWC-AAVALAHALQENATQKEQLLRVQLAT---SIGNPPVSLLQQCTNILSQGSKIQTRV 440
Query: 258 GTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELVSNPSA--TVCTRGLAA 315
G +L LL TWL++CP AV FL + ++ +L ++ +GL A
Sbjct: 441 G----------LLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAENLGEEEQLVQGLCA 490
Query: 316 VLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQKSFLFSSA--KP 368
+LLG + +N +S + I +++G ++ K + K L+S A KP
Sbjct: 491 LLLGISIYFNDNSLESYMKEKLKQLIEKRIGKENFIEKLGFISKHELYSRASQKP 545
>pdb|1HC1|A Chain A, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|A Chain A, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|B Chain B, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|C Chain C, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|D Chain D, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|E Chain E, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|F Chain F, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|B Chain B, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|C Chain C, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|D Chain D, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|E Chain E, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|F Chain F, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
Length = 657
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 491 GDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMES 550
G G +Q +Q + LD++ T DL + ++ L D+S+Y + A +E+
Sbjct: 4 GTGNAQKQQDINHLLDKIYEPTKYPDLKDIAENFNPL--------GDTSIYNDHGAAVET 55
Query: 551 DLKSLSDAYNSLEQTNFH 568
+K L+D + LEQ +++
Sbjct: 56 LMKELND-HRLLEQRHWY 72
>pdb|3V03|A Chain A, Crystal Structure Of Bovine Serum Albumin
pdb|3V03|B Chain B, Crystal Structure Of Bovine Serum Albumin
pdb|4F5S|A Chain A, Crystal Structure Of Bovine Serum Albumin
pdb|4F5S|B Chain B, Crystal Structure Of Bovine Serum Albumin
Length = 583
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 168 SHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCC------RAASVLSH 209
SHA E+ ++ FG L + +L E+ GD+ CC R LSH
Sbjct: 58 SHAGCEKSLHTLFGDELCKVASLRETYGDMADCCEKQEPERNECFLSH 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,916,252
Number of Sequences: 62578
Number of extensions: 633610
Number of successful extensions: 1668
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1629
Number of HSP's gapped (non-prelim): 48
length of query: 657
length of database: 14,973,337
effective HSP length: 105
effective length of query: 552
effective length of database: 8,402,647
effective search space: 4638261144
effective search space used: 4638261144
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)