BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006200
(657 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B0F9L4|GOGC6_ARATH Golgin candidate 6 OS=Arabidopsis thaliana GN=GC6 PE=1 SV=2
Length = 914
Score = 906 bits (2342), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/648 (68%), Positives = 540/648 (83%), Gaps = 4/648 (0%)
Query: 1 MGFDPLISILKLRGSAYSFTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLV 60
MGF+P+ISILKLRG Y FTQQKT+NLLSALETIN+LI+ ++ +PGKD++KL N+TVLV
Sbjct: 256 MGFEPIISILKLRGITYKFTQQKTVNLLSALETINMLIMGRADTEPGKDSNKLANRTVLV 315
Query: 61 QKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALN 120
QKK LD LLML VESQWAPVAVRC +CI D+I HPKNRD+LASKVLGE+ QVE ALN
Sbjct: 316 QKKLLDYLLMLGVESQWAPVAVRCMTFKCIGDLIDGHPKNRDILASKVLGEDRQVEPALN 375
Query: 121 SILRIILRTSSMQEFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSF 180
SILRIIL+TSS+QEF+AAD +F +FCEKN +GQ ML STLIPQP S LE+DV+MSF
Sbjct: 376 SILRIILQTSSIQEFVAADYVFKTFCEKNTEGQTMLASTLIPQPHPTSRDHLEDDVHMSF 435
Query: 181 GSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLM 240
GSML+RGL GE+DGDLE CCRAAS+LSH++ DNL+CKE+ L+I LE+PMPS+G EPL
Sbjct: 436 GSMLLRGLCSGEADGDLETCCRAASILSHVVKDNLRCKEKALKIVLESPMPSMGTPEPLF 495
Query: 241 HRMVRYLALASSMKTKDGTGKAG--YIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLL 298
R+VRYLA+ASSMK+K+ + G YIQ IILKLLVTW DCP AV CFLDSR HLT+LL
Sbjct: 496 QRIVRYLAVASSMKSKEKSSTLGKSYIQQIILKLLVTWTVDCPTAVQCFLDSRHHLTFLL 555
Query: 299 ELVSNPSATVCTRGLAAVLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQ 358
ELV++P+ATVC RGLA++LLGECVIYNKS + G+DAFS+VD++ QK+GLTSYF KF+EMQ
Sbjct: 556 ELVTDPAATVCIRGLASILLGECVIYNKSIENGKDAFSVVDAVGQKMGLTSYFSKFEEMQ 615
Query: 359 KSFLFS-SAKPTQALKPLTRSTAASMAEIEDIDDSDLSDKENEDHPLLSSMFDKHFVDII 417
SF+FS S KP Q KPLTR+ S AEI ++D+ D K NEDHP+L S+FD F+ ++
Sbjct: 616 NSFIFSPSKKPPQGYKPLTRTPTPSEAEINEVDEVDEMVKGNEDHPMLLSLFDASFIGLV 675
Query: 418 KSLESSIRENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLG 477
KSLE +IRE IVDVYSRPKSEVAVVPA+LEQ++GE++KDY+ RLKAF+EKQCSEIQ LL
Sbjct: 676 KSLEGNIRERIVDVYSRPKSEVAVVPADLEQKSGENEKDYINRLKAFIEKQCSEIQNLLA 735
Query: 478 RNATLAEELAKIGGDGASQ-SEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIES 536
RNA LAE++A G + SQ SEQRAS +D+VQ+E++R++L E SQRLE +K EKA+IES
Sbjct: 736 RNAALAEDVASSGRNEQSQGSEQRASTVMDKVQMESIRRELQETSQRLETVKAEKAKIES 795
Query: 537 DSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAEAR 596
++S +N+AAK+E DLKSLSDAYNSLEQ N+HLE+EVK+LK G S + PD+EAIK E R
Sbjct: 796 EASSNKNMAAKLEFDLKSLSDAYNSLEQANYHLEQEVKSLKGGESPMQFPDIEAIKEEVR 855
Query: 597 EEAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVEKLLEGIGD 644
+EAQKESE ELNDLLVCLGQE+SKVEKLSA+L+ELG DV+KLLE IGD
Sbjct: 856 KEAQKESEDELNDLLVCLGQEESKVEKLSAKLIELGVDVDKLLEDIGD 903
>sp|O60763|USO1_HUMAN General vesicular transport factor p115 OS=Homo sapiens GN=USO1
PE=1 SV=2
Length = 962
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 143/615 (23%), Positives = 250/615 (40%), Gaps = 97/615 (15%)
Query: 19 FTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVESQWA 78
++ QK NL L+ + +L+ + K + L+Q+ L +LM +
Sbjct: 272 WSAQKVTNLHLMLQLVRVLVSPTNPPGATSSCQKAMFQCGLLQQ--LCTILM----ATGV 325
Query: 79 PVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFL-- 136
P + + +S++I N+D AS P A + ++ ++ + Q F+
Sbjct: 326 PADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMV---NERQPFVLR 382
Query: 137 -AADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVN-MSFGSMLIRGLTLGESD 194
A F F KN GQ + STL+P + ++ N +S G +L GL S
Sbjct: 383 CAVLYCFQCFLYKNQKGQGEIVSTLLP-------STIDATGNSVSAGQLLCGGLF---ST 432
Query: 195 GDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMK 254
L C AA L+H L +N KE++LR++L + + + L+ + L+ S ++
Sbjct: 433 DSLSNWC-AAVALAHALQENATQKEQLLRVQLATSIGNPPVS--LLQQCTNILSQGSKIQ 489
Query: 255 TKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELVSN--PSATVCTRG 312
T+ G +L LL TWL++CP AV FL + ++ +L ++ +G
Sbjct: 490 TRVG----------LLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAENLGEEEQLVQG 539
Query: 313 LAAVLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQKSFLFSSAKPTQAL 372
L A+LLG + +N +S + I +++G ++ K + K L+S A
Sbjct: 540 LCALLLGISIYFNDNSLESYMKEKLKQLIEKRIGKENFIEKLGFISKHELYSRA------ 593
Query: 373 KPLTRSTAASMAEIEDIDDSDLSDKENEDHPLLSSM-FDKHFVDIIKSLESSI------- 424
S K + P M FD F ++K LE I
Sbjct: 594 ----------------------SQKPQPNFPSPEYMIFDHEFTKLVKELEGVITKAIYKS 631
Query: 425 ----------------RENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQ 468
+NIV Y E + EL Q+ + K ++L+ V +Q
Sbjct: 632 SEEDKKEEEVKKTLEQHDNIVTHYKNMIREQDLQLEELRQQVS-TLKCQNEQLQTAVTQQ 690
Query: 469 CSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILK 528
S+IQ+ + L +L K S SE + ++ LR+++ E + E+L
Sbjct: 691 VSQIQQHKDQYNLLKIQLGKDNQHQGSYSEGAQMNGIQPEEIGRLREEIEELKRNQELL- 749
Query: 529 EEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTN--FHLEKEVKALKSGGSSVSSP 586
++Q+ SM N+ + S S A S + L++E+ LKS +S S
Sbjct: 750 --QSQLTEKDSMIENMKSSQTSGTNEQSSAIVSARDSEQVAELKQELATLKSQLNS-QSV 806
Query: 587 DVEAIKAEAREEAQK 601
++ ++ E +E QK
Sbjct: 807 EITKLQTEKQELLQK 821
>sp|P41541|USO1_BOVIN General vesicular transport factor p115 OS=Bos taurus GN=USO1 PE=1
SV=1
Length = 961
Score = 79.7 bits (195), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 138/614 (22%), Positives = 248/614 (40%), Gaps = 96/614 (15%)
Query: 19 FTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVESQWA 78
++ QK NL L+ + +L+ + K + L+Q+ L +LM +
Sbjct: 272 WSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQ--LCTILM----ATGV 325
Query: 79 PVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAA 138
P + + +S++I N+D AS P A + ++ ++ A
Sbjct: 326 PADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAV 385
Query: 139 DRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVN-MSFGSMLIRGLTLGESDGDL 197
F F KN GQ + STL+P + ++ N +S G +L GL S L
Sbjct: 386 LYCFQCFLYKNQKGQGEIVSTLLP-------STIDATGNTVSAGQLLCGGLF---STDSL 435
Query: 198 EVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKD 257
C AA L+H L +N KE++LR++L + + + L+ + L+ S ++T+
Sbjct: 436 SNWC-AAVALAHALQENATQKEQLLRVQLATSIGNPPVS--LLQQCTNILSQGSKIQTRV 492
Query: 258 GTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELVSN--PSATVCTRGLAA 315
G +L LL TWL++CP AV FL + ++ +L ++ +GL A
Sbjct: 493 G----------LLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAENLGEEEQLVQGLCA 542
Query: 316 VLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQKSFLFSSAKPTQALKPL 375
+LLG + +N +S + I +++G ++ K + K L+S A
Sbjct: 543 LLLGISIYFNDNSLETYMKEKLKQLIEKRIGKENFIEKLGFISKHELYSRA--------- 593
Query: 376 TRSTAASMAEIEDIDDSDLSDKENEDHPLLSSM-FDKHFVDIIKSLESSI---------- 424
S K + P M FD F ++K LE I
Sbjct: 594 -------------------SQKPQPNFPSPEYMIFDHEFTKLVKELEGVITKAIYKSSEE 634
Query: 425 -------------RENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSE 471
++IV Y E + EL+Q+ + K ++L+ V +Q S+
Sbjct: 635 DKKEEEVKKTLEQHDSIVTHYKNMIREQDLQLEELKQQIS-TLKCQNEQLQTAVTQQVSQ 693
Query: 472 IQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQ---VETLRKDLHEASQRLEILK 528
IQ+ + L ++G D Q ++ VQ + LR+++ E E+L
Sbjct: 694 IQQHKDQYNLLK---VQLGKDSQHQGPYTDGAQMNGVQPEEISRLREEIEELKSNRELL- 749
Query: 529 EEKAQIESDSSMYRNL-AAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPD 587
++Q+ S+ NL ++++ S A + L++E+ LKS +S S +
Sbjct: 750 --QSQLAEKDSLIENLKSSQLSPGTNEQSSATAGDSEQIAELKQELATLKSQLNS-QSVE 806
Query: 588 VEAIKAEAREEAQK 601
+ ++ E +E QK
Sbjct: 807 ITKLQTEKQELLQK 820
>sp|Q9Z1Z0|USO1_MOUSE General vesicular transport factor p115 OS=Mus musculus GN=Uso1
PE=1 SV=2
Length = 959
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 132/590 (22%), Positives = 233/590 (39%), Gaps = 92/590 (15%)
Query: 19 FTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVESQWA 78
++ QK NL L+ + +L+ + K + L+Q+ L +LM +
Sbjct: 272 WSAQKVTNLHLMLQLVRVLVSPTNPPGATSSCQKAMFQCGLLQQ--LCTILM----ATGI 325
Query: 79 PVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAA 138
P + + +S++I N+D AS P A + ++ ++ A
Sbjct: 326 PADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAV 385
Query: 139 DRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVN-MSFGSMLIRGLTLGESDGDL 197
F F KN GQ + +TL+P + ++ N +S G +L GL S L
Sbjct: 386 LYCFQCFLYKNEKGQGEIVATLLP-------STIDATGNSVSAGQLLCGGLF---STDSL 435
Query: 198 EVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKD 257
C AA L+H L N KE++LR++L + + + L+ + L+ S ++T+
Sbjct: 436 SNWC-AAVALAHALQGNATQKEQLLRVQLATSIGNPPVS--LLQQCTNILSQGSKIQTRV 492
Query: 258 GTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELVSN--PSATVCTRGLAA 315
G +L LL TWL++CP AV FL + ++ +L ++ +GL A
Sbjct: 493 G----------LLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAENLGEEEQLVQGLCA 542
Query: 316 VLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQKSFLFSSAKPTQALKPL 375
+LLG + +N +S + I +++G ++ K + K L+S A
Sbjct: 543 LLLGISIYFNDNSLENYTKEKLKQLIEKRIGKENFIEKLGFISKHELYSRA--------- 593
Query: 376 TRSTAASMAEIEDIDDSDLSDKENEDHPLLSSM-FDKHFVDIIKSLESSI---------- 424
S K + P M FD F ++K LE I
Sbjct: 594 -------------------SQKPQPNFPSPEYMIFDHEFTKLVKELEGVITKAIYKSSEE 634
Query: 425 -------------RENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSE 471
+NIV Y E + EL+Q+ + K ++L+ V +Q S+
Sbjct: 635 DKKEEEVKKTLEQHDNIVTHYKNMIREQDLQLEELKQQVS-TLKCQNEQLQTAVTQQASQ 693
Query: 472 IQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEK 531
IQ+ + L +L K S + + ++ LR+++ E + +L +
Sbjct: 694 IQQHKDQYNLLKVQLGKDNHHQGSHGDGAQVNGIQPEEISRLREEIEELKSQQALL---Q 750
Query: 532 AQIESDSSMYRNLAAKMESDLKSLSDAY---NSLEQTNFHLEKEVKALKS 578
Q+ S+ NL + S + + A EQ L++E+ ALKS
Sbjct: 751 GQLAEKDSLIENLKSSQASGMSEQASATCPPRDPEQVA-ELKQELTALKS 799
>sp|P41542|USO1_RAT General vesicular transport factor p115 OS=Rattus norvegicus
GN=Uso1 PE=1 SV=1
Length = 959
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 134/590 (22%), Positives = 235/590 (39%), Gaps = 92/590 (15%)
Query: 19 FTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVESQWA 78
++ QK NL L+ + +L+ + K + L+Q+ L +LM +
Sbjct: 272 WSAQKVTNLHLMLQLVRVLVSPTNPPGATSSCQKAMFQCGLLQQ--LCTILM----ATGI 325
Query: 79 PVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAA 138
P + + +S++I N+D AS P A + ++ ++ A
Sbjct: 326 PADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAV 385
Query: 139 DRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVN-MSFGSMLIRGLTLGESDGDL 197
F F KN GQ + +TL+P + ++ N +S G +L GL S L
Sbjct: 386 LYCFQCFLYKNEKGQGEIVATLLP-------STIDATGNSVSAGQLLCGGLF---STDSL 435
Query: 198 EVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKD 257
C AA L+H L N KE++LR++L + + + L+ + L+ S ++T+
Sbjct: 436 SNWC-AAVALAHALQGNATQKEQLLRVQLATSIGNPPVS--LLQQCTNILSQGSKIQTRV 492
Query: 258 GTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELVSN--PSATVCTRGLAA 315
G +L LL TWL++CP AV FL + ++ +L ++ +GL A
Sbjct: 493 G----------LLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAENLGEEEQLVQGLCA 542
Query: 316 VLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQKSFLFSSAKPTQALKPL 375
+LLG + +N +S + I +++G +Y K + K L+S A
Sbjct: 543 LLLGISIYFNDNSLENYTKEKLKQLIEKRIGKENYIEKLGFISKHELYSRA--------- 593
Query: 376 TRSTAASMAEIEDIDDSDLSDKENEDHPLLSSM-FDKHFVDIIKSLESSI---------- 424
S K + P M FD F ++K LE I
Sbjct: 594 -------------------SQKPQPNFPSPEYMIFDHEFTKLVKELEGVITKAIYKSSEE 634
Query: 425 -------------RENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSE 471
+NIV Y E + EL+Q+ + K ++L+ V +Q S+
Sbjct: 635 DKKEEEVKKTLEQHDNIVTHYKNMIREQDLQLEELKQQVS-TLKCQNEQLQTAVTQQASQ 693
Query: 472 IQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEK 531
IQ+ + L +L K S S+ + ++ LR+++ E +L +
Sbjct: 694 IQQHKDQYNLLKVQLGKDNHHQGSHSDGAQVNGIQPEEISRLREEIEELRSHQVLL---Q 750
Query: 532 AQIESDSSMYRNLAAKMESDLKSLSDAYNS---LEQTNFHLEKEVKALKS 578
+Q+ ++ NL + S + + A S EQ L++E+ ALKS
Sbjct: 751 SQLAEKDTVIENLRSSQVSGMSEQALATCSPRDAEQVA-ELKQELSALKS 799
>sp|A1TTM6|SYS_ACIAC Serine--tRNA ligase OS=Acidovorax citrulli (strain AAC00-1) GN=serS
PE=3 SV=1
Length = 439
Score = 37.7 bits (86), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 14/108 (12%)
Query: 513 LRKDLHEASQRLEILKEEKA--QIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLE 570
LRKDL A RLE K+ +A Q+E+ S +ES+ K+L L+ L
Sbjct: 7 LRKDLDSAIARLETRKKPQAFLQVEAFQS--------LESERKTLQTRTEELQSRRNQLS 58
Query: 571 KEVKALKSGGSSVSS--PDVEAIKAEAREEAQK--ESEAELNDLLVCL 614
K+V LK+ G + + +V +KAE A + + +AEL+ LLV +
Sbjct: 59 KQVGQLKARGENADAVMAEVGGLKAELENSAARLEQIQAELHTLLVAV 106
>sp|Q922J3|CLIP1_MOUSE CAP-Gly domain-containing linker protein 1 OS=Mus musculus GN=Clip1
PE=1 SV=1
Length = 1391
Score = 37.0 bits (84), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 72/137 (52%), Gaps = 15/137 (10%)
Query: 500 RASGALDRVQVETLRKDLHEASQRLEILKEEK-AQIESDSSMYRNLAAKMESDLKSLSDA 558
R + + ++++ETLR+ L A ++++ L+ E+ A+ +S+ + L K E L L D+
Sbjct: 733 RKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEK-ELVLTGLQDS 791
Query: 559 YNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAEAREEAQKESEAELNDLLVCLGQEQ 618
N + Q LEKE++ LK +S S EA+ A+ R + D + L Q++
Sbjct: 792 LNQVNQVKETLEKELQTLKEKFASTSE---EAVSAQTR----------MQDTVNKLHQKE 838
Query: 619 SKVEKLSARLLELGEDV 635
+ LS+ L +L E++
Sbjct: 839 EQFNVLSSELEKLRENL 855
>sp|O54874|MRCKA_RAT Serine/threonine-protein kinase MRCK alpha OS=Rattus norvegicus
GN=Cdc42bpa PE=1 SV=1
Length = 1732
Score = 36.2 bits (82), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 7/132 (5%)
Query: 458 VKRLKAFVEKQC----SEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETL 513
+ +LK +EK+ EI K G +A+ + L K D S+ +Q A V + L
Sbjct: 686 ITKLKTDLEKKSIFYEEEISKREGIHASEIKNLKKELHD--SEGQQLALNKEIMVLKDKL 743
Query: 514 RKDLHEA-SQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKE 572
K E+ S+R E E K Q E + + K+ S+L L+ Y SL N HLE+E
Sbjct: 744 EKTRRESQSEREEFENEFKQQYEREKVLLTEENKKLTSELDKLTSLYESLSLRNQHLEEE 803
Query: 573 VKALKSGGSSVS 584
VK L SV+
Sbjct: 804 VKDLADKKESVA 815
>sp|Q3UU96|MRCKA_MOUSE Serine/threonine-protein kinase MRCK alpha OS=Mus musculus
GN=Cdc42bpa PE=1 SV=2
Length = 1719
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 7/132 (5%)
Query: 458 VKRLKAFVEKQC----SEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETL 513
+ +LK +EK+ EI K G +A+ + L K D S+ +Q A V + L
Sbjct: 686 ITKLKTDLEKKSIFYEEEISKREGIHASEIKNLKKELHD--SEGQQLALNKEILVLKDKL 743
Query: 514 RKDLHEA-SQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKE 572
K E+ S+R E E K Q E + + K+ S+L L+ Y SL N HLE+E
Sbjct: 744 EKTRRESQSEREEFENEFKQQYEREKVLLTEENKKLTSELDKLTSLYESLSLRNQHLEEE 803
Query: 573 VKALKSGGSSVS 584
VK L SV+
Sbjct: 804 VKDLADKKESVA 815
>sp|Q5RA03|SHOT1_PONAB Shootin-1 OS=Pongo abelii PE=2 SV=2
Length = 456
Score = 34.3 bits (77), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 8/96 (8%)
Query: 471 EIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEE 530
++ K L NA L ++L + Q +Q+ ++++ ETL K++H Q+LE+L+E+
Sbjct: 261 QLSKALDENAKLTQQLE----EERIQHQQKVKELKEQLENETLHKEIHNLKQQLELLEED 316
Query: 531 KAQIE----SDSSMYRNLAAKMESDLKSLSDAYNSL 562
K ++E + RNL ++ K ++ + NS+
Sbjct: 317 KKELELKYQNSEEKARNLKHSVDELQKRVNQSENSV 352
>sp|Q92351|PCP1_SCHPO Spindle pole body protein pcp1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=pcp1 PE=1 SV=1
Length = 1208
Score = 33.9 bits (76), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 78/173 (45%), Gaps = 22/173 (12%)
Query: 430 DVYSRPKSEVAVVPAELEQRNG-------ESDKDYV--KRLKAFVEKQCSEIQKLLGRNA 480
D+ + + E+A + ++E++ E + YV + A ++ +C E R
Sbjct: 306 DLLTEKEDEIATLKRQIEEKENSSSAFENEENSSYVHLQEDYAILQAKCDE---FADRIQ 362
Query: 481 TLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEIL-------KEEKAQ 533
L +L K + + + G D +QV TL++ LH+A++ +E L EE
Sbjct: 363 VLTADLEKEKENQIMHESEASIGLTDSMQVHTLQEQLHKANEEIEFLHDQISRMNEEGKN 422
Query: 534 IESDSSMYRNLAAK---MESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSV 583
E +R+L + +ES L++L D NSL L ++++L++ +
Sbjct: 423 FEDIMLQFRSLEEERDVLESKLQTLEDDNNSLRLMTSSLGNQIESLRTQNREI 475
>sp|A0MZ66|SHOT1_HUMAN Shootin-1 OS=Homo sapiens GN=KIAA1598 PE=1 SV=4
Length = 631
Score = 33.9 bits (76), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 8/93 (8%)
Query: 474 KLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQ 533
K L NA L ++L + Q +Q+ ++++ ETL K++H Q+LE+L+E+K +
Sbjct: 264 KALDENAKLTQQLE----EERIQHQQKVKELEEQLENETLHKEIHNLKQQLELLEEDKKE 319
Query: 534 IE----SDSSMYRNLAAKMESDLKSLSDAYNSL 562
+E + RNL ++ K ++ + NS+
Sbjct: 320 LELKYQNSEEKARNLKHSVDELQKRVNQSENSV 352
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 225,279,000
Number of Sequences: 539616
Number of extensions: 9106250
Number of successful extensions: 33411
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 1236
Number of HSP's that attempted gapping in prelim test: 30899
Number of HSP's gapped (non-prelim): 3191
length of query: 657
length of database: 191,569,459
effective HSP length: 124
effective length of query: 533
effective length of database: 124,657,075
effective search space: 66442220975
effective search space used: 66442220975
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 65 (29.6 bits)