Query 006200
Match_columns 657
No_of_seqs 181 out of 218
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 19:50:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006200.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006200hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0946 ER-Golgi vesicle-tethe 100.0 4.4E-93 9.5E-98 787.2 50.9 421 6-488 259-689 (970)
2 PF04869 Uso1_p115_head: Uso1 100.0 1.1E-75 2.4E-80 617.7 23.9 293 96-428 1-312 (312)
3 PF04871 Uso1_p115_C: Uso1 / p 99.7 2.1E-17 4.5E-22 155.6 11.4 67 589-655 68-134 (136)
4 PRK09039 hypothetical protein; 97.2 0.017 3.7E-07 62.9 18.3 154 461-628 44-199 (343)
5 KOG0971 Microtubule-associated 96.8 0.12 2.7E-06 61.2 20.5 174 455-635 324-541 (1243)
6 PF09726 Macoilin: Transmembra 96.7 0.079 1.7E-06 62.8 18.8 33 454-486 416-448 (697)
7 PRK11637 AmiB activator; Provi 96.6 0.23 4.9E-06 55.7 20.6 29 458-486 49-77 (428)
8 PRK11637 AmiB activator; Provi 96.4 0.34 7.4E-06 54.3 20.7 28 460-487 44-71 (428)
9 KOG0996 Structural maintenance 96.0 0.44 9.6E-06 58.2 19.5 72 507-578 864-963 (1293)
10 KOG0250 DNA repair protein RAD 95.9 0.56 1.2E-05 57.1 20.0 123 455-577 294-421 (1074)
11 PF08614 ATG16: Autophagy prot 95.8 0.071 1.5E-06 53.4 10.3 115 453-577 64-178 (194)
12 TIGR02169 SMC_prok_A chromosom 95.7 0.8 1.7E-05 56.9 21.5 26 600-625 471-496 (1164)
13 COG1579 Zn-ribbon protein, pos 95.7 0.88 1.9E-05 47.3 18.1 44 509-552 39-82 (239)
14 PF07888 CALCOCO1: Calcium bin 95.7 0.74 1.6E-05 52.9 19.1 26 461-486 141-166 (546)
15 TIGR02169 SMC_prok_A chromosom 95.7 0.93 2E-05 56.4 21.9 26 603-628 467-492 (1164)
16 PHA02562 46 endonuclease subun 95.7 0.93 2E-05 52.1 20.3 70 508-577 213-282 (562)
17 TIGR02168 SMC_prok_B chromosom 95.6 1 2.2E-05 55.9 21.8 14 620-633 966-979 (1179)
18 PF14662 CCDC155: Coiled-coil 95.6 1.2 2.7E-05 44.5 18.0 98 468-579 13-110 (193)
19 KOG0995 Centromere-associated 95.5 1.9 4.2E-05 49.4 21.3 34 454-487 219-252 (581)
20 PRK09039 hypothetical protein; 95.5 1.3 2.9E-05 48.4 19.7 42 508-549 116-157 (343)
21 PF09730 BicD: Microtubule-ass 95.4 1.1 2.4E-05 53.3 19.9 134 459-628 30-179 (717)
22 TIGR02168 SMC_prok_B chromosom 95.3 1.3 2.7E-05 55.1 21.2 7 283-289 507-513 (1179)
23 PF09726 Macoilin: Transmembra 95.2 1.6 3.4E-05 52.2 20.5 28 601-628 583-610 (697)
24 PRK02224 chromosome segregatio 95.1 0.83 1.8E-05 55.6 18.5 121 456-577 468-592 (880)
25 KOG0250 DNA repair protein RAD 95.1 1.2 2.6E-05 54.4 19.0 33 458-490 276-308 (1074)
26 PF04869 Uso1_p115_head: Uso1 95.0 1.3 2.8E-05 47.9 17.6 152 63-223 34-196 (312)
27 PF10174 Cast: RIM-binding pro 94.9 2 4.3E-05 51.8 20.1 120 458-577 289-419 (775)
28 PRK03918 chromosome segregatio 94.9 2.2 4.7E-05 51.9 21.1 10 337-346 113-122 (880)
29 PF12325 TMF_TATA_bd: TATA ele 94.9 1.2 2.6E-05 41.6 14.6 32 453-484 13-44 (120)
30 KOG0976 Rho/Rac1-interacting s 94.8 2.4 5.1E-05 50.3 19.5 116 461-576 39-160 (1265)
31 KOG0977 Nuclear envelope prote 94.7 2.1 4.6E-05 49.3 19.0 44 507-550 91-134 (546)
32 KOG0996 Structural maintenance 94.7 2 4.3E-05 52.9 19.3 36 595-630 946-981 (1293)
33 PF10174 Cast: RIM-binding pro 94.7 2.2 4.8E-05 51.4 19.8 88 455-552 321-408 (775)
34 PF04849 HAP1_N: HAP1 N-termin 94.6 0.75 1.6E-05 49.3 14.0 74 505-578 231-304 (306)
35 PF00038 Filament: Intermediat 94.6 4.2 9E-05 43.3 20.0 91 530-629 210-307 (312)
36 TIGR01843 type_I_hlyD type I s 94.5 2.4 5.3E-05 46.5 18.7 28 603-630 244-271 (423)
37 PF06818 Fez1: Fez1; InterPro 94.5 2.9 6.3E-05 42.4 17.3 100 448-562 7-106 (202)
38 COG4372 Uncharacterized protei 94.5 1.3 2.9E-05 48.4 15.7 57 521-577 122-178 (499)
39 KOG2160 Armadillo/beta-catenin 94.5 0.31 6.7E-06 52.9 11.0 107 26-156 99-206 (342)
40 PF10481 CENP-F_N: Cenp-F N-te 94.4 0.39 8.5E-06 50.2 11.2 74 506-579 93-191 (307)
41 KOG0161 Myosin class II heavy 94.4 1.9 4E-05 56.4 19.4 72 507-578 907-978 (1930)
42 COG1196 Smc Chromosome segrega 94.4 2.6 5.6E-05 53.3 20.6 30 600-629 886-915 (1163)
43 PF12325 TMF_TATA_bd: TATA ele 94.3 1.4 2.9E-05 41.3 13.4 36 596-631 73-108 (120)
44 COG3883 Uncharacterized protei 94.1 8.1 0.00017 40.8 20.2 24 463-486 31-54 (265)
45 PF07888 CALCOCO1: Calcium bin 94.0 2.3 4.9E-05 49.1 17.1 111 459-577 286-405 (546)
46 KOG0946 ER-Golgi vesicle-tethe 93.9 18 0.0004 43.3 36.1 145 54-224 245-411 (970)
47 PF08317 Spc7: Spc7 kinetochor 93.9 2.1 4.5E-05 46.4 16.2 45 506-550 207-251 (325)
48 COG1579 Zn-ribbon protein, pos 93.9 8.8 0.00019 40.0 19.8 21 611-631 166-186 (239)
49 PRK02224 chromosome segregatio 93.9 3.4 7.3E-05 50.4 19.7 8 90-97 57-64 (880)
50 PF15254 CCDC14: Coiled-coil d 93.8 6.5 0.00014 46.8 20.4 174 457-637 342-554 (861)
51 PF10473 CENP-F_leu_zip: Leuci 93.7 6.9 0.00015 37.6 17.3 65 507-571 51-115 (140)
52 KOG0999 Microtubule-associated 93.6 7.8 0.00017 44.4 19.9 70 509-578 108-191 (772)
53 COG1196 Smc Chromosome segrega 93.6 6 0.00013 50.1 21.7 14 282-295 607-620 (1163)
54 PF05667 DUF812: Protein of un 93.6 3.7 8E-05 48.2 18.3 40 597-636 446-485 (594)
55 KOG0161 Myosin class II heavy 93.4 2.5 5.3E-05 55.3 17.8 30 457-486 937-966 (1930)
56 PF03224 V-ATPase_H_N: V-ATPas 93.4 3.4 7.5E-05 44.2 16.7 196 79-319 70-266 (312)
57 PF13851 GAS: Growth-arrest sp 93.4 10 0.00022 38.5 21.5 34 544-577 94-127 (201)
58 PF08614 ATG16: Autophagy prot 93.3 0.35 7.6E-06 48.5 8.3 109 506-615 72-182 (194)
59 PRK03918 chromosome segregatio 93.2 6.8 0.00015 47.7 20.9 23 337-359 147-169 (880)
60 PRK10884 SH3 domain-containing 93.0 1.2 2.7E-05 45.3 11.9 70 460-549 90-159 (206)
61 KOG0999 Microtubule-associated 93.0 1.2 2.7E-05 50.6 12.7 105 470-578 8-121 (772)
62 KOG0933 Structural maintenance 92.9 7.2 0.00016 47.6 19.3 73 505-577 784-856 (1174)
63 PHA02562 46 endonuclease subun 92.9 11 0.00024 43.4 20.9 32 458-489 215-246 (562)
64 PF04849 HAP1_N: HAP1 N-termin 92.8 6.3 0.00014 42.4 17.2 145 457-627 161-305 (306)
65 COG4026 Uncharacterized protei 92.8 3.8 8.2E-05 42.0 14.6 75 507-581 134-208 (290)
66 KOG0980 Actin-binding protein 92.8 8.1 0.00018 46.6 19.4 73 507-579 444-516 (980)
67 KOG4360 Uncharacterized coiled 92.7 4.9 0.00011 45.7 16.6 72 508-579 233-304 (596)
68 PF04156 IncA: IncA protein; 92.7 6.2 0.00013 39.1 16.2 28 601-628 161-188 (191)
69 KOG0976 Rho/Rac1-interacting s 92.6 7.9 0.00017 46.2 18.6 53 526-578 320-372 (1265)
70 PF12128 DUF3584: Protein of u 92.6 9.8 0.00021 48.4 21.5 28 460-487 604-631 (1201)
71 PRK10884 SH3 domain-containing 92.6 1.8 3.8E-05 44.1 12.3 62 507-578 92-153 (206)
72 PF15035 Rootletin: Ciliary ro 92.5 9.1 0.0002 38.3 16.9 94 507-619 59-152 (182)
73 PRK04863 mukB cell division pr 92.3 10 0.00022 49.1 21.1 69 509-577 356-424 (1486)
74 PF04871 Uso1_p115_C: Uso1 / p 92.3 9.7 0.00021 36.3 16.2 21 552-572 57-77 (136)
75 COG4942 Membrane-bound metallo 92.2 21 0.00045 40.1 20.7 25 460-484 151-175 (420)
76 PF10473 CENP-F_leu_zip: Leuci 92.1 12 0.00025 36.0 17.4 21 507-527 23-43 (140)
77 PF00261 Tropomyosin: Tropomyo 92.0 15 0.00032 38.1 18.5 105 511-628 123-227 (237)
78 COG3074 Uncharacterized protei 92.0 3.2 7E-05 35.0 10.7 32 454-485 2-33 (79)
79 PRK04863 mukB cell division pr 92.0 7.9 0.00017 50.1 19.6 71 508-578 348-418 (1486)
80 PF15619 Lebercilin: Ciliary p 91.9 14 0.00029 37.4 17.6 29 457-485 13-41 (194)
81 PF00261 Tropomyosin: Tropomyo 91.9 17 0.00038 37.5 21.2 12 600-611 220-231 (237)
82 PF12718 Tropomyosin_1: Tropom 91.7 4.3 9.4E-05 39.0 13.2 31 458-488 23-53 (143)
83 KOG0933 Structural maintenance 91.4 15 0.00033 45.0 19.6 25 460-484 681-705 (1174)
84 TIGR01005 eps_transp_fam exopo 91.4 13 0.00028 44.8 19.8 28 507-534 236-263 (754)
85 PF09755 DUF2046: Uncharacteri 91.4 24 0.00052 38.1 20.1 38 601-638 170-208 (310)
86 PRK04778 septation ring format 91.2 24 0.00051 41.3 21.2 26 465-490 277-302 (569)
87 PF15066 CAGE1: Cancer-associa 91.1 26 0.00056 39.7 19.9 124 455-578 316-467 (527)
88 KOG0994 Extracellular matrix g 91.0 8.5 0.00018 47.6 17.1 95 462-566 1583-1677(1758)
89 PF05701 WEMBL: Weak chloropla 91.0 30 0.00065 40.1 21.5 68 510-577 283-357 (522)
90 KOG4673 Transcription factor T 90.9 21 0.00045 42.1 19.4 107 454-560 521-672 (961)
91 KOG0804 Cytoplasmic Zn-finger 90.8 2.6 5.7E-05 47.1 11.9 23 595-617 432-454 (493)
92 PRK15422 septal ring assembly 90.7 4.7 0.0001 34.8 10.8 32 454-485 2-33 (79)
93 KOG1853 LIS1-interacting prote 90.7 24 0.00052 36.9 19.3 33 454-486 43-75 (333)
94 TIGR00606 rad50 rad50. This fa 90.5 14 0.0003 47.6 19.8 13 414-426 694-706 (1311)
95 PF13251 DUF4042: Domain of un 90.4 6.2 0.00014 39.5 13.4 77 81-160 1-79 (182)
96 PF10481 CENP-F_N: Cenp-F N-te 90.1 2.8 6E-05 44.1 10.7 69 510-578 62-130 (307)
97 KOG0612 Rho-associated, coiled 90.0 17 0.00036 45.5 18.7 20 343-366 325-344 (1317)
98 PF08317 Spc7: Spc7 kinetochor 89.9 12 0.00025 40.7 16.1 52 526-577 213-264 (325)
99 PF05667 DUF812: Protein of un 89.9 14 0.0003 43.6 17.5 20 142-161 86-109 (594)
100 TIGR03007 pepcterm_ChnLen poly 89.8 16 0.00035 41.5 18.0 67 457-525 205-271 (498)
101 COG4942 Membrane-bound metallo 89.8 36 0.00079 38.3 19.8 9 626-634 224-232 (420)
102 PF04156 IncA: IncA protein; 89.7 14 0.00031 36.5 15.4 25 462-486 87-111 (191)
103 KOG0977 Nuclear envelope prote 89.7 20 0.00043 41.6 18.2 27 460-486 96-122 (546)
104 PF15070 GOLGA2L5: Putative go 89.6 37 0.0008 40.2 20.9 33 457-489 37-69 (617)
105 KOG2160 Armadillo/beta-catenin 89.6 3.2 6.9E-05 45.3 11.2 92 51-154 154-247 (342)
106 PRK04778 septation ring format 89.5 26 0.00057 40.9 19.6 31 601-631 407-437 (569)
107 PF11559 ADIP: Afadin- and alp 89.4 15 0.00032 35.1 14.8 18 562-579 131-148 (151)
108 PF04012 PspA_IM30: PspA/IM30 89.3 27 0.00058 35.5 21.0 22 461-482 28-49 (221)
109 KOG2991 Splicing regulator [RN 89.2 32 0.00069 36.2 18.3 57 596-653 251-322 (330)
110 TIGR00606 rad50 rad50. This fa 89.2 24 0.00052 45.4 20.5 33 599-631 334-366 (1311)
111 KOG4674 Uncharacterized conser 89.1 30 0.00064 45.4 20.6 123 457-579 852-987 (1822)
112 PF06785 UPF0242: Uncharacteri 89.1 14 0.00031 40.0 15.3 36 455-490 84-119 (401)
113 PF06785 UPF0242: Uncharacteri 89.1 25 0.00054 38.2 17.1 18 595-612 198-215 (401)
114 PF12329 TMF_DNA_bd: TATA elem 89.0 3.8 8.3E-05 35.0 9.2 25 460-484 2-26 (74)
115 KOG4674 Uncharacterized conser 89.0 24 0.00051 46.2 19.6 100 465-574 1217-1324(1822)
116 PRK11281 hypothetical protein; 89.0 29 0.00063 43.8 20.3 72 507-578 127-213 (1113)
117 KOG4460 Nuclear pore complex, 88.9 10 0.00023 43.5 14.8 28 457-484 589-616 (741)
118 COG2433 Uncharacterized conser 88.9 6.9 0.00015 45.5 13.7 88 459-567 418-505 (652)
119 PF07926 TPR_MLP1_2: TPR/MLP1/ 88.8 21 0.00045 33.6 15.7 32 507-538 58-89 (132)
120 COG1340 Uncharacterized archae 88.8 37 0.00081 36.5 20.1 113 508-625 138-255 (294)
121 TIGR03185 DNA_S_dndD DNA sulfu 88.7 29 0.00062 41.3 19.5 81 468-556 389-469 (650)
122 PF12718 Tropomyosin_1: Tropom 88.7 23 0.00051 34.0 18.2 10 617-626 127-136 (143)
123 PF11559 ADIP: Afadin- and alp 88.7 14 0.00031 35.3 14.1 46 532-577 76-121 (151)
124 PF07106 TBPIP: Tat binding pr 88.3 6 0.00013 38.6 11.4 69 508-581 72-140 (169)
125 PF07926 TPR_MLP1_2: TPR/MLP1/ 88.3 23 0.00049 33.3 15.1 24 600-623 100-123 (132)
126 PF04111 APG6: Autophagy prote 88.2 10 0.00022 41.1 14.0 67 511-577 67-133 (314)
127 KOG4603 TBP-1 interacting prot 88.2 14 0.00031 36.5 13.4 53 526-578 83-137 (201)
128 PF00038 Filament: Intermediat 88.0 17 0.00037 38.7 15.6 27 551-577 277-303 (312)
129 PF10146 zf-C4H2: Zinc finger- 87.8 24 0.00051 36.7 15.8 62 516-577 33-94 (230)
130 TIGR02680 conserved hypothetic 87.7 41 0.00089 43.5 21.2 23 532-554 847-869 (1353)
131 KOG0971 Microtubule-associated 87.7 56 0.0012 40.0 20.2 22 557-578 368-389 (1243)
132 PRK10698 phage shock protein P 87.4 38 0.00082 34.9 20.5 22 609-630 163-184 (222)
133 PF15070 GOLGA2L5: Putative go 87.3 38 0.00082 40.2 18.9 33 458-490 31-63 (617)
134 cd00020 ARM Armadillo/beta-cat 87.1 5.1 0.00011 35.0 9.3 87 58-157 2-88 (120)
135 KOG0978 E3 ubiquitin ligase in 87.0 52 0.0011 39.4 19.6 37 600-636 589-625 (698)
136 smart00787 Spc7 Spc7 kinetocho 87.0 21 0.00045 38.8 15.4 48 530-577 212-259 (312)
137 KOG0980 Actin-binding protein 86.9 59 0.0013 39.6 19.9 85 467-565 355-439 (980)
138 PF12128 DUF3584: Protein of u 86.8 15 0.00032 46.9 16.3 60 511-570 603-662 (1201)
139 KOG3647 Predicted coiled-coil 86.7 46 0.001 35.2 18.2 36 431-476 31-66 (338)
140 PF09789 DUF2353: Uncharacteri 86.6 20 0.00044 38.9 15.0 101 454-554 77-179 (319)
141 KOG0963 Transcription factor/C 86.4 58 0.0013 38.3 19.1 72 507-578 234-306 (629)
142 PRK01156 chromosome segregatio 86.4 54 0.0012 40.3 20.6 20 530-549 219-238 (895)
143 TIGR03007 pepcterm_ChnLen poly 86.4 21 0.00045 40.7 16.0 20 609-628 356-375 (498)
144 smart00787 Spc7 Spc7 kinetocho 86.2 27 0.00059 37.9 15.8 80 463-548 165-244 (312)
145 KOG0994 Extracellular matrix g 86.2 45 0.00098 41.7 18.6 19 608-626 1696-1714(1758)
146 PF10146 zf-C4H2: Zinc finger- 86.0 27 0.00059 36.3 15.1 64 514-577 38-101 (230)
147 COG3883 Uncharacterized protei 85.7 43 0.00094 35.5 16.5 48 507-554 51-98 (265)
148 PF10168 Nup88: Nuclear pore c 85.7 69 0.0015 38.7 20.3 27 458-484 545-572 (717)
149 KOG0249 LAR-interacting protei 85.7 19 0.00042 42.6 14.9 39 452-490 87-125 (916)
150 TIGR01000 bacteriocin_acc bact 85.2 48 0.001 37.5 18.1 33 598-630 284-316 (457)
151 KOG0995 Centromere-associated 85.0 83 0.0018 36.7 19.4 34 456-489 294-327 (581)
152 PF13514 AAA_27: AAA domain 84.9 50 0.0011 41.8 19.7 32 600-631 898-929 (1111)
153 COG4372 Uncharacterized protei 84.6 30 0.00066 38.3 15.0 20 472-491 76-95 (499)
154 TIGR01005 eps_transp_fam exopo 84.2 78 0.0017 38.2 20.2 32 458-489 239-270 (754)
155 PF04899 MbeD_MobD: MbeD/MobD 83.7 12 0.00027 31.7 9.3 61 513-576 8-68 (70)
156 KOG4809 Rab6 GTPase-interactin 83.6 70 0.0015 37.1 17.7 86 532-618 362-455 (654)
157 COG4026 Uncharacterized protei 83.5 10 0.00022 38.9 10.3 55 511-565 152-206 (290)
158 PF09730 BicD: Microtubule-ass 83.2 40 0.00088 40.5 16.6 69 507-579 75-143 (717)
159 KOG0804 Cytoplasmic Zn-finger 83.0 36 0.00079 38.4 15.1 47 532-578 364-410 (493)
160 KOG4673 Transcription factor T 82.9 76 0.0016 37.8 18.0 23 272-294 443-465 (961)
161 PF09759 Atx10homo_assoc: Spin 82.8 6.2 0.00013 35.9 7.7 72 82-163 2-74 (102)
162 PF11932 DUF3450: Protein of u 82.6 65 0.0014 33.5 17.2 10 631-640 164-173 (251)
163 KOG0288 WD40 repeat protein Ti 82.5 59 0.0013 36.5 16.2 61 507-567 12-72 (459)
164 PF06005 DUF904: Protein of un 82.3 28 0.00061 29.7 11.0 29 456-484 4-32 (72)
165 PF05700 BCAS2: Breast carcino 82.1 64 0.0014 33.1 16.5 69 507-578 142-210 (221)
166 PF05911 DUF869: Plant protein 82.0 56 0.0012 39.7 17.4 51 528-578 630-680 (769)
167 PF04111 APG6: Autophagy prote 82.0 31 0.00067 37.4 14.1 60 512-571 75-134 (314)
168 PRK10929 putative mechanosensi 81.9 48 0.001 41.9 17.3 10 314-323 5-14 (1109)
169 KOG1029 Endocytic adaptor prot 81.9 75 0.0016 38.3 17.6 40 539-578 426-465 (1118)
170 KOG4809 Rab6 GTPase-interactin 81.7 36 0.00078 39.3 14.7 44 513-556 364-407 (654)
171 KOG0978 E3 ubiquitin ligase in 81.7 73 0.0016 38.2 17.8 34 600-633 575-608 (698)
172 PF02403 Seryl_tRNA_N: Seryl-t 81.5 30 0.00065 31.1 11.8 60 414-490 4-63 (108)
173 TIGR02680 conserved hypothetic 81.3 1.8E+02 0.004 37.8 23.9 32 453-484 217-251 (1353)
174 COG1842 PspA Phage shock prote 81.2 72 0.0016 33.1 21.2 41 528-568 98-138 (225)
175 PRK00409 recombination and DNA 80.9 59 0.0013 39.7 17.4 34 453-486 499-532 (782)
176 COG1382 GimC Prefoldin, chaper 80.9 41 0.0009 31.5 12.5 36 514-549 12-47 (119)
177 PF01576 Myosin_tail_1: Myosin 80.8 0.51 1.1E-05 57.6 0.0 38 600-637 266-303 (859)
178 PF05701 WEMBL: Weak chloropla 80.5 1.2E+02 0.0026 35.2 20.4 13 216-228 134-146 (522)
179 PRK11281 hypothetical protein; 80.5 75 0.0016 40.3 18.4 28 461-488 126-153 (1113)
180 PF11932 DUF3450: Protein of u 80.4 35 0.00077 35.5 13.6 26 608-633 134-160 (251)
181 PF13870 DUF4201: Domain of un 80.4 62 0.0013 31.8 16.0 23 459-481 52-74 (177)
182 KOG1029 Endocytic adaptor prot 80.2 76 0.0016 38.3 16.9 98 455-562 485-582 (1118)
183 PF07111 HCR: Alpha helical co 79.9 1.4E+02 0.0031 35.7 19.8 32 600-631 598-629 (739)
184 PRK01156 chromosome segregatio 79.8 1.3E+02 0.0029 36.9 20.3 22 338-359 152-173 (895)
185 TIGR02338 gimC_beta prefoldin, 79.8 38 0.00082 30.8 11.9 8 472-479 12-19 (110)
186 PF09304 Cortex-I_coil: Cortex 79.6 35 0.00076 31.3 11.3 43 507-549 15-57 (107)
187 TIGR01069 mutS2 MutS2 family p 79.2 62 0.0013 39.4 16.8 33 453-485 494-526 (771)
188 PF13514 AAA_27: AAA domain 79.0 1.1E+02 0.0023 38.9 19.4 35 599-633 294-328 (1111)
189 PF07058 Myosin_HC-like: Myosi 78.6 50 0.0011 35.6 13.7 40 511-550 10-49 (351)
190 PF08826 DMPK_coil: DMPK coile 78.6 28 0.00061 28.8 9.5 45 533-577 15-59 (61)
191 PF10267 Tmemb_cc2: Predicted 78.4 54 0.0012 36.8 14.7 96 455-570 211-318 (395)
192 TIGR02338 gimC_beta prefoldin, 77.7 56 0.0012 29.7 12.5 10 600-609 97-106 (110)
193 KOG1003 Actin filament-coating 77.6 86 0.0019 31.9 19.3 170 458-638 6-202 (205)
194 TIGR03017 EpsF chain length de 77.4 1.2E+02 0.0027 33.8 17.7 21 609-629 343-363 (444)
195 KOG0243 Kinesin-like protein [ 77.2 1.6E+02 0.0035 36.9 19.2 31 333-364 237-271 (1041)
196 PF04826 Arm_2: Armadillo-like 76.8 18 0.00039 38.0 10.1 134 16-160 6-158 (254)
197 PRK15422 septal ring assembly 76.8 47 0.001 28.9 10.6 16 470-485 25-40 (79)
198 KOG0964 Structural maintenance 76.6 1E+02 0.0022 38.2 17.0 29 603-631 340-368 (1200)
199 TIGR03752 conj_TIGR03752 integ 76.4 27 0.00059 39.7 11.8 34 457-490 60-93 (472)
200 COG5185 HEC1 Protein involved 76.4 1.2E+02 0.0026 34.7 16.4 34 457-490 331-364 (622)
201 KOG1962 B-cell receptor-associ 76.2 52 0.0011 33.9 12.7 10 475-484 132-141 (216)
202 PF03962 Mnd1: Mnd1 family; I 76.2 73 0.0016 32.0 13.8 34 457-490 63-96 (188)
203 PF10805 DUF2730: Protein of u 76.1 22 0.00047 32.4 9.2 16 413-428 1-16 (106)
204 PF04582 Reo_sigmaC: Reovirus 75.8 6.1 0.00013 42.9 6.3 73 509-581 85-157 (326)
205 PRK14154 heat shock protein Gr 75.5 62 0.0013 33.2 13.1 50 504-553 48-97 (208)
206 TIGR03495 phage_LysB phage lys 75.0 33 0.00071 32.8 10.3 28 459-486 22-49 (135)
207 PF10168 Nup88: Nuclear pore c 75.0 1.2E+02 0.0026 36.8 17.4 40 530-569 580-619 (717)
208 PF15066 CAGE1: Cancer-associa 74.8 1.6E+02 0.0035 33.6 19.4 166 411-611 358-523 (527)
209 PF09304 Cortex-I_coil: Cortex 74.6 71 0.0015 29.4 13.5 11 476-486 15-25 (107)
210 PF14662 CCDC155: Coiled-coil 74.4 1E+02 0.0022 31.2 19.1 47 526-572 92-138 (193)
211 PF10498 IFT57: Intra-flagella 74.3 1.5E+02 0.0032 33.0 18.1 31 547-577 284-314 (359)
212 PF10186 Atg14: UV radiation r 74.1 1.2E+02 0.0025 31.7 19.3 22 465-486 22-43 (302)
213 TIGR03185 DNA_S_dndD DNA sulfu 73.7 81 0.0018 37.5 15.7 12 309-320 170-181 (650)
214 TIGR03752 conj_TIGR03752 integ 73.5 16 0.00035 41.5 9.1 43 507-549 58-100 (472)
215 COG1382 GimC Prefoldin, chaper 73.3 67 0.0015 30.1 11.6 20 465-484 8-27 (119)
216 PF10186 Atg14: UV radiation r 73.2 1.2E+02 0.0027 31.5 19.2 27 458-484 22-48 (302)
217 PF05557 MAD: Mitotic checkpoi 73.1 1.1 2.4E-05 53.6 0.0 51 528-579 229-279 (722)
218 PRK09343 prefoldin subunit bet 73.0 81 0.0018 29.4 12.8 33 517-549 16-48 (121)
219 PF10234 Cluap1: Clusterin-ass 72.8 99 0.0022 32.9 14.2 61 508-568 169-236 (267)
220 PRK10929 putative mechanosensi 72.7 2.4E+02 0.0052 36.0 19.7 96 531-634 175-280 (1109)
221 PF12795 MscS_porin: Mechanose 72.3 1.2E+02 0.0027 31.2 17.7 110 459-578 81-206 (240)
222 PF06818 Fez1: Fez1; InterPro 72.3 1E+02 0.0022 31.5 13.6 19 468-486 8-26 (202)
223 TIGR03017 EpsF chain length de 72.2 1.7E+02 0.0036 32.8 17.0 12 509-520 262-273 (444)
224 PF08581 Tup_N: Tup N-terminal 72.2 61 0.0013 28.2 10.4 51 509-559 12-62 (79)
225 KOG1248 Uncharacterized conser 72.1 2E+02 0.0044 36.4 18.3 233 67-353 142-430 (1176)
226 COG1842 PspA Phage shock prote 72.1 1.2E+02 0.0026 31.4 14.5 149 466-632 27-186 (225)
227 TIGR02449 conserved hypothetic 71.8 32 0.00069 28.9 8.2 30 511-540 3-32 (65)
228 PF06005 DUF904: Protein of un 71.8 63 0.0014 27.6 11.5 46 511-556 21-66 (72)
229 PF14197 Cep57_CLD_2: Centroso 71.7 44 0.00095 28.3 9.2 29 508-536 5-33 (69)
230 KOG0612 Rho-associated, coiled 71.6 1.7E+02 0.0037 37.2 17.5 19 23-41 24-42 (1317)
231 PRK10361 DNA recombination pro 71.6 2E+02 0.0043 33.2 19.7 15 598-612 165-179 (475)
232 KOG4572 Predicted DNA-binding 71.6 2E+02 0.0042 35.2 17.2 107 461-567 920-1033(1424)
233 PF03962 Mnd1: Mnd1 family; I 71.6 1.2E+02 0.0025 30.6 14.1 65 513-578 67-131 (188)
234 smart00806 AIP3 Actin interact 71.3 1.9E+02 0.0041 32.8 16.5 39 505-543 152-194 (426)
235 PF02403 Seryl_tRNA_N: Seryl-t 71.1 36 0.00079 30.5 9.4 65 509-573 30-97 (108)
236 PF06160 EzrA: Septation ring 71.1 1.6E+02 0.0035 34.5 17.0 153 469-634 251-436 (560)
237 COG2433 Uncharacterized conser 71.0 51 0.0011 38.7 12.4 47 511-557 418-464 (652)
238 PF01576 Myosin_tail_1: Myosin 70.8 1.4 2.9E-05 54.0 0.0 89 460-549 191-284 (859)
239 PF11802 CENP-K: Centromere-as 70.8 1.5E+02 0.0033 31.5 16.6 20 597-616 160-179 (268)
240 COG1340 Uncharacterized archae 70.7 1.6E+02 0.0035 31.8 19.4 70 508-577 172-241 (294)
241 PF13851 GAS: Growth-arrest sp 70.7 1.3E+02 0.0027 30.6 18.3 24 461-484 18-41 (201)
242 KOG2077 JNK/SAPK-associated pr 70.6 73 0.0016 37.1 13.3 15 621-635 408-422 (832)
243 KOG1853 LIS1-interacting prote 70.4 1.5E+02 0.0032 31.3 18.1 30 513-542 50-79 (333)
244 PRK14143 heat shock protein Gr 70.0 79 0.0017 33.1 12.6 49 506-554 65-113 (238)
245 TIGR02977 phageshock_pspA phag 69.9 1.3E+02 0.0029 30.6 20.7 22 461-482 29-50 (219)
246 PF08172 CASP_C: CASP C termin 69.8 90 0.0019 32.8 13.1 39 517-555 81-119 (248)
247 KOG0288 WD40 repeat protein Ti 69.7 79 0.0017 35.5 13.0 41 509-549 28-68 (459)
248 KOG0243 Kinesin-like protein [ 69.3 1.8E+02 0.004 36.4 17.1 107 462-578 447-553 (1041)
249 KOG4643 Uncharacterized coiled 69.0 3.1E+02 0.0067 34.4 19.3 30 461-490 262-291 (1195)
250 PF09789 DUF2353: Uncharacteri 69.0 1.8E+02 0.0039 31.8 21.2 117 505-629 83-227 (319)
251 PF09759 Atx10homo_assoc: Spin 68.6 19 0.00041 32.8 6.9 57 54-111 19-75 (102)
252 COG5185 HEC1 Protein involved 68.5 2.2E+02 0.0049 32.6 20.9 27 459-485 260-286 (622)
253 COG5240 SEC21 Vesicle coat com 68.4 93 0.002 36.6 13.5 159 76-284 112-280 (898)
254 PF10498 IFT57: Intra-flagella 68.3 1.3E+02 0.0028 33.4 14.6 12 267-278 42-53 (359)
255 PF07106 TBPIP: Tat binding pr 67.9 84 0.0018 30.6 11.9 34 331-364 16-49 (169)
256 KOG0963 Transcription factor/C 67.8 2.6E+02 0.0056 33.1 20.8 26 552-577 244-269 (629)
257 KOG2264 Exostosin EXT1L [Signa 67.6 34 0.00073 39.7 9.9 55 524-578 95-149 (907)
258 KOG4403 Cell surface glycoprot 67.1 1.8E+02 0.0038 33.0 15.0 14 475-488 257-270 (575)
259 TIGR02977 phageshock_pspA phag 67.0 1.5E+02 0.0033 30.2 14.9 160 457-632 18-186 (219)
260 COG1730 GIM5 Predicted prefold 66.9 1.3E+02 0.0028 29.2 14.1 39 534-572 99-137 (145)
261 PF07798 DUF1640: Protein of u 66.9 1.4E+02 0.003 29.5 14.0 16 507-522 79-94 (177)
262 PF00769 ERM: Ezrin/radixin/mo 66.7 1.7E+02 0.0037 30.6 16.3 27 551-577 83-109 (246)
263 KOG1003 Actin filament-coating 66.6 1.6E+02 0.0034 30.1 17.3 19 471-489 5-23 (205)
264 PF05622 HOOK: HOOK protein; 66.2 1.9 4.2E-05 51.6 0.0 15 564-578 459-473 (713)
265 PF13870 DUF4201: Domain of un 66.2 1.4E+02 0.003 29.3 19.8 54 528-581 83-136 (177)
266 PF10363 DUF2435: Protein of u 66.0 16 0.00034 32.5 5.7 61 79-151 16-76 (92)
267 PF04012 PspA_IM30: PspA/IM30 66.0 1.6E+02 0.0034 29.9 15.3 158 457-632 17-185 (221)
268 PF14915 CCDC144C: CCDC144C pr 65.9 2E+02 0.0043 31.1 18.6 100 470-579 137-236 (305)
269 TIGR02231 conserved hypothetic 65.9 69 0.0015 37.0 12.5 6 513-518 76-81 (525)
270 KOG4643 Uncharacterized coiled 65.7 3.4E+02 0.0073 34.1 18.0 47 530-576 503-549 (1195)
271 PRK03947 prefoldin subunit alp 65.3 1.2E+02 0.0027 28.4 12.9 43 507-549 5-47 (140)
272 PF05622 HOOK: HOOK protein; 65.3 2.1 4.5E-05 51.3 0.0 16 308-323 109-124 (713)
273 PF09744 Jnk-SapK_ap_N: JNK_SA 65.2 1.3E+02 0.0027 29.6 12.3 17 557-573 96-112 (158)
274 PRK11448 hsdR type I restricti 65.2 47 0.001 42.2 11.7 23 614-637 231-253 (1123)
275 PF14282 FlxA: FlxA-like prote 65.2 50 0.0011 30.0 9.0 18 520-537 56-73 (106)
276 PF05911 DUF869: Plant protein 65.1 3.3E+02 0.0072 33.4 19.0 31 543-573 127-157 (769)
277 PF05546 She9_MDM33: She9 / Md 65.1 56 0.0012 33.4 10.1 72 532-611 5-80 (207)
278 KOG2991 Splicing regulator [RN 65.0 1.9E+02 0.0042 30.6 15.3 23 464-486 137-159 (330)
279 PRK13729 conjugal transfer pil 64.7 29 0.00063 39.6 8.8 34 546-579 93-126 (475)
280 PF15290 Syntaphilin: Golgi-lo 64.6 1E+02 0.0022 33.0 12.0 34 457-490 69-102 (305)
281 TIGR02231 conserved hypothetic 64.4 50 0.0011 38.1 11.0 101 453-556 68-172 (525)
282 PF00769 ERM: Ezrin/radixin/mo 64.3 1.6E+02 0.0035 30.8 13.8 50 528-577 18-67 (246)
283 PRK09343 prefoldin subunit bet 64.1 1.2E+02 0.0027 28.1 12.7 24 461-484 5-28 (121)
284 KOG0964 Structural maintenance 63.9 3.8E+02 0.0082 33.6 18.7 72 505-576 394-465 (1200)
285 PF00514 Arm: Armadillo/beta-c 63.5 22 0.00048 26.1 5.3 38 54-94 3-40 (41)
286 COG3206 GumC Uncharacterized p 63.4 2.6E+02 0.0057 31.6 18.3 19 468-486 200-218 (458)
287 PF12329 TMF_DNA_bd: TATA elem 63.3 79 0.0017 27.0 9.3 36 536-571 33-68 (74)
288 PF04728 LPP: Lipoprotein leuc 63.0 62 0.0013 26.4 8.0 30 547-576 7-36 (56)
289 PF05010 TACC: Transforming ac 62.8 1.9E+02 0.0041 29.7 17.0 21 600-620 184-204 (207)
290 PF15290 Syntaphilin: Golgi-lo 62.8 92 0.002 33.3 11.3 10 563-572 107-116 (305)
291 PF15397 DUF4618: Domain of un 62.3 2.2E+02 0.0047 30.3 18.4 46 532-577 63-108 (258)
292 PF10234 Cluap1: Clusterin-ass 62.3 2.2E+02 0.0048 30.4 14.8 96 457-576 163-258 (267)
293 PF10046 BLOC1_2: Biogenesis o 62.1 1.2E+02 0.0026 27.2 12.4 66 512-577 11-79 (99)
294 PF09755 DUF2046: Uncharacteri 62.0 2.1E+02 0.0045 31.2 14.1 24 551-574 179-202 (310)
295 TIGR03495 phage_LysB phage lys 61.7 1.1E+02 0.0023 29.4 10.7 18 561-578 79-96 (135)
296 KOG0979 Structural maintenance 61.6 4.2E+02 0.009 33.3 18.0 24 455-478 201-224 (1072)
297 KOG0239 Kinesin (KAR3 subfamil 61.5 1.8E+02 0.0039 35.0 15.0 71 507-577 240-313 (670)
298 PRK10476 multidrug resistance 61.5 2.4E+02 0.0052 30.5 15.8 20 463-482 86-105 (346)
299 PLN02939 transferase, transfer 61.4 4.2E+02 0.0092 33.3 18.7 73 471-544 164-248 (977)
300 PF08647 BRE1: BRE1 E3 ubiquit 61.4 1.2E+02 0.0026 27.0 13.0 63 516-578 4-66 (96)
301 TIGR00634 recN DNA repair prot 61.3 2.7E+02 0.0059 32.5 16.4 22 533-554 319-340 (563)
302 PRK10698 phage shock protein P 61.3 2E+02 0.0044 29.6 17.3 43 526-568 103-145 (222)
303 KOG4302 Microtubule-associated 61.0 1.2E+02 0.0025 36.4 13.1 43 512-554 100-142 (660)
304 PRK14139 heat shock protein Gr 60.9 96 0.0021 31.2 10.8 47 507-553 31-77 (185)
305 KOG0249 LAR-interacting protei 60.9 1.6E+02 0.0034 35.4 13.8 17 474-490 116-132 (916)
306 TIGR01010 BexC_CtrB_KpsE polys 60.8 2.5E+02 0.0055 30.6 16.5 46 310-361 47-92 (362)
307 PRK09841 cryptic autophosphory 60.6 96 0.0021 37.4 12.9 19 610-628 372-390 (726)
308 PF08045 CDC14: Cell division 60.6 38 0.00082 35.8 8.3 73 20-108 104-176 (257)
309 PF07889 DUF1664: Protein of u 60.3 1.6E+02 0.0034 28.0 12.7 36 535-570 88-123 (126)
310 cd00020 ARM Armadillo/beta-cat 59.7 1.2E+02 0.0025 26.3 11.8 80 54-146 40-119 (120)
311 PF07889 DUF1664: Protein of u 59.3 1.6E+02 0.0035 27.9 11.4 55 509-563 69-123 (126)
312 PF01365 RYDR_ITPR: RIH domain 59.2 47 0.001 33.3 8.5 55 52-107 32-102 (207)
313 PRK03598 putative efflux pump 59.1 2.5E+02 0.0055 30.0 15.0 13 510-522 109-121 (331)
314 KOG0962 DNA repair protein RAD 59.1 5.1E+02 0.011 33.5 19.5 155 458-630 866-1080(1294)
315 PF11544 Spc42p: Spindle pole 58.9 1.1E+02 0.0023 26.6 9.1 51 508-558 5-55 (76)
316 PF09486 HrpB7: Bacterial type 58.6 1.9E+02 0.0041 28.4 16.0 31 614-644 116-146 (158)
317 PF13166 AAA_13: AAA domain 58.4 3.8E+02 0.0083 31.9 21.0 24 465-488 324-347 (712)
318 PRK10869 recombination and rep 58.4 3.3E+02 0.0072 31.9 16.4 37 537-573 318-357 (553)
319 PF05483 SCP-1: Synaptonemal c 58.3 4E+02 0.0087 32.1 19.8 72 507-578 470-555 (786)
320 PF10508 Proteasom_PSMB: Prote 58.2 3.4E+02 0.0074 31.3 18.0 251 28-359 220-485 (503)
321 COG4717 Uncharacterized conser 57.9 2E+02 0.0044 35.4 14.3 24 595-618 278-301 (984)
322 PF03148 Tektin: Tektin family 57.7 2.6E+02 0.0057 31.1 14.8 44 532-575 320-363 (384)
323 PRK05431 seryl-tRNA synthetase 57.7 1.3E+02 0.0029 34.0 12.6 56 414-487 4-59 (425)
324 PLN03188 kinesin-12 family pro 57.4 1.7E+02 0.0036 37.5 14.0 13 470-482 993-1005(1320)
325 COG1566 EmrA Multidrug resista 57.3 1.7E+02 0.0038 32.3 13.0 15 614-628 185-199 (352)
326 TIGR01000 bacteriocin_acc bact 57.2 2.7E+02 0.0058 31.6 15.0 28 460-487 169-196 (457)
327 COG3074 Uncharacterized protei 56.9 94 0.002 26.5 8.3 41 532-572 21-61 (79)
328 PF07989 Microtub_assoc: Micro 56.6 72 0.0016 27.4 7.9 22 465-486 2-23 (75)
329 KOG0982 Centrosomal protein Nu 56.6 3.5E+02 0.0075 30.8 17.9 198 406-628 156-358 (502)
330 PF06120 Phage_HK97_TLTM: Tail 55.9 3E+02 0.0064 29.9 14.1 31 456-486 74-104 (301)
331 TIGR00998 8a0101 efflux pump m 55.5 2.8E+02 0.0061 29.5 16.0 19 468-486 78-96 (334)
332 KOG1899 LAR transmembrane tyro 55.4 1.7E+02 0.0036 34.8 12.6 27 461-487 109-135 (861)
333 PF13094 CENP-Q: CENP-Q, a CEN 55.2 73 0.0016 30.8 8.8 45 511-555 30-74 (160)
334 PF15456 Uds1: Up-regulated Du 55.0 1.4E+02 0.0029 28.2 10.1 33 505-538 19-51 (124)
335 PF12709 Kinetocho_Slk19: Cent 54.4 1.6E+02 0.0034 26.2 11.0 45 532-576 30-75 (87)
336 PLN02320 seryl-tRNA synthetase 53.2 1.8E+02 0.0039 33.7 12.8 61 406-487 64-124 (502)
337 PF02050 FliJ: Flagellar FliJ 53.0 1.6E+02 0.0034 25.8 13.3 96 507-610 4-118 (123)
338 PF15294 Leu_zip: Leucine zipp 53.0 2.7E+02 0.0058 29.9 13.0 15 305-319 34-48 (278)
339 KOG0979 Structural maintenance 52.8 2.4E+02 0.0053 35.2 14.1 81 461-558 627-707 (1072)
340 PF12777 MT: Microtubule-bindi 52.4 56 0.0012 35.7 8.3 19 341-359 145-164 (344)
341 PF04949 Transcrip_act: Transc 52.4 2.3E+02 0.0051 27.6 13.4 52 526-577 88-139 (159)
342 PF05529 Bap31: B-cell recepto 52.3 59 0.0013 32.3 7.9 7 353-359 65-71 (192)
343 PF03915 AIP3: Actin interacti 51.7 1.1E+02 0.0023 34.9 10.4 69 457-525 93-168 (424)
344 PRK14147 heat shock protein Gr 51.6 70 0.0015 31.8 8.1 42 510-551 20-61 (172)
345 PRK09973 putative outer membra 51.4 85 0.0018 27.7 7.6 24 554-577 28-51 (85)
346 PRK11519 tyrosine kinase; Prov 51.2 1.8E+02 0.004 35.0 13.1 22 508-529 274-295 (719)
347 PF08232 Striatin: Striatin fa 51.2 1.2E+02 0.0026 28.8 9.3 60 520-579 9-68 (134)
348 PRK10476 multidrug resistance 51.1 3.5E+02 0.0076 29.2 15.0 20 467-486 83-102 (346)
349 PF06156 DUF972: Protein of un 51.0 61 0.0013 29.7 7.0 42 538-579 10-51 (107)
350 PF06810 Phage_GP20: Phage min 51.0 1.6E+02 0.0034 28.7 10.3 19 462-480 19-37 (155)
351 COG5283 Phage-related tail pro 51.0 4.3E+02 0.0094 33.8 16.0 25 454-478 20-44 (1213)
352 PRK02119 hypothetical protein; 50.8 79 0.0017 26.9 7.2 12 474-485 6-17 (73)
353 PHA02414 hypothetical protein 50.7 87 0.0019 28.3 7.6 45 534-578 34-78 (111)
354 COG4717 Uncharacterized conser 50.6 3.7E+02 0.008 33.3 14.9 43 507-549 556-598 (984)
355 PF05278 PEARLI-4: Arabidopsis 50.6 3.4E+02 0.0074 29.0 14.2 68 509-576 194-261 (269)
356 PF11180 DUF2968: Protein of u 50.4 2.4E+02 0.0053 28.6 11.6 28 526-553 109-136 (192)
357 PF04728 LPP: Lipoprotein leuc 50.3 1.4E+02 0.003 24.4 8.3 31 510-540 5-35 (56)
358 KOG0018 Structural maintenance 50.3 4.6E+02 0.0099 33.2 15.8 40 600-639 418-457 (1141)
359 PRK13729 conjugal transfer pil 49.8 56 0.0012 37.4 7.9 6 513-518 81-86 (475)
360 PRK04406 hypothetical protein; 49.5 1E+02 0.0023 26.4 7.8 11 475-485 9-19 (75)
361 PF05266 DUF724: Protein of un 49.5 2.5E+02 0.0053 28.4 11.7 19 454-472 88-106 (190)
362 PF10212 TTKRSYEDQ: Predicted 49.5 4.9E+02 0.011 30.4 15.2 27 458-484 415-441 (518)
363 PF15619 Lebercilin: Ciliary p 49.4 3E+02 0.0064 27.9 20.0 71 507-577 67-145 (194)
364 PRK10246 exonuclease subunit S 49.4 6.6E+02 0.014 31.9 20.1 20 141-160 157-176 (1047)
365 KOG0018 Structural maintenance 49.1 6.6E+02 0.014 31.9 18.0 32 534-565 315-346 (1141)
366 PRK00888 ftsB cell division pr 49.1 57 0.0012 29.7 6.5 35 509-543 28-62 (105)
367 COG3206 GumC Uncharacterized p 49.0 2.3E+02 0.0049 32.1 12.8 16 471-486 286-301 (458)
368 PF07798 DUF1640: Protein of u 49.0 2.7E+02 0.0059 27.4 15.4 17 509-525 74-90 (177)
369 TIGR00414 serS seryl-tRNA synt 48.6 1.1E+02 0.0024 34.5 10.1 33 546-578 72-104 (418)
370 PF15254 CCDC14: Coiled-coil d 48.3 4.4E+02 0.0094 32.2 14.8 13 239-251 252-264 (861)
371 PF15397 DUF4618: Domain of un 48.0 3.7E+02 0.008 28.6 15.6 19 507-525 119-137 (258)
372 PF06632 XRCC4: DNA double-str 47.3 4.1E+02 0.0088 29.4 13.8 52 517-568 132-183 (342)
373 PF10226 DUF2216: Uncharacteri 47.0 2.2E+02 0.0047 28.9 10.5 12 605-616 132-143 (195)
374 PRK10803 tol-pal system protei 46.9 1.4E+02 0.0029 31.6 9.9 33 454-486 38-70 (263)
375 PF11180 DUF2968: Protein of u 46.8 3.3E+02 0.0071 27.7 12.5 20 466-485 94-113 (192)
376 PF09744 Jnk-SapK_ap_N: JNK_SA 46.7 2.9E+02 0.0064 27.1 12.1 31 532-562 85-115 (158)
377 KOG3130 Uncharacterized conser 46.0 24 0.00051 39.3 4.0 30 603-632 233-262 (514)
378 PF10205 KLRAQ: Predicted coil 45.9 2.4E+02 0.0052 25.8 10.6 28 546-573 43-70 (102)
379 KOG4571 Activating transcripti 45.9 1.3E+02 0.0027 32.5 9.2 43 507-549 247-289 (294)
380 PF12795 MscS_porin: Mechanose 45.8 3.6E+02 0.0077 27.8 19.3 27 458-484 40-66 (240)
381 KOG2391 Vacuolar sorting prote 45.7 1.9E+02 0.004 31.9 10.6 16 455-470 209-224 (365)
382 PRK14145 heat shock protein Gr 45.6 2.6E+02 0.0056 28.5 11.2 47 507-553 44-90 (196)
383 KOG1899 LAR transmembrane tyro 45.6 6E+02 0.013 30.4 17.3 28 601-628 277-304 (861)
384 PF05557 MAD: Mitotic checkpoi 45.6 2.5E+02 0.0054 33.9 13.1 35 455-489 502-536 (722)
385 PRK09841 cryptic autophosphory 45.4 3.3E+02 0.0071 33.0 14.0 25 507-531 273-297 (726)
386 PF04576 Zein-binding: Zein-bi 45.3 2.3E+02 0.0051 25.5 12.5 26 524-549 40-65 (94)
387 COG3096 MukB Uncharacterized p 45.0 6.7E+02 0.014 30.7 23.6 140 404-550 882-1026(1480)
388 PF15035 Rootletin: Ciliary ro 44.8 3.4E+02 0.0073 27.2 17.0 54 507-560 80-133 (182)
389 PF14992 TMCO5: TMCO5 family 44.7 4.3E+02 0.0093 28.4 13.5 25 461-485 23-47 (280)
390 PRK14011 prefoldin subunit alp 44.7 3E+02 0.0065 26.6 12.1 21 458-478 12-32 (144)
391 PRK14153 heat shock protein Gr 44.2 53 0.0011 33.3 6.0 42 509-550 34-75 (194)
392 KOG2077 JNK/SAPK-associated pr 44.2 57 0.0012 37.9 6.8 96 463-572 47-157 (832)
393 PRK14158 heat shock protein Gr 44.2 92 0.002 31.6 7.7 49 505-553 37-85 (194)
394 PRK14148 heat shock protein Gr 44.2 90 0.0019 31.7 7.6 46 507-552 39-84 (195)
395 KOG0166 Karyopherin (importin) 44.0 1.4E+02 0.0031 34.6 10.1 126 22-162 146-282 (514)
396 PRK10361 DNA recombination pro 43.9 5.7E+02 0.012 29.6 16.7 34 595-628 158-191 (475)
397 PF07111 HCR: Alpha helical co 43.9 6.7E+02 0.014 30.4 20.5 41 598-638 507-547 (739)
398 COG0419 SbcC ATPase involved i 43.5 7.4E+02 0.016 30.8 20.5 25 456-480 171-195 (908)
399 PF13513 HEAT_EZ: HEAT-like re 43.2 64 0.0014 24.9 5.2 52 81-143 2-53 (55)
400 PF03915 AIP3: Actin interacti 43.1 5.5E+02 0.012 29.2 15.1 100 453-564 199-320 (424)
401 KOG1962 B-cell receptor-associ 42.8 88 0.0019 32.3 7.4 7 352-358 61-67 (216)
402 PF08454 RIH_assoc: RyR and IP 42.8 95 0.0021 28.5 7.0 78 20-109 3-97 (109)
403 PF08172 CASP_C: CASP C termin 42.7 2.4E+02 0.0052 29.7 10.8 39 535-573 85-123 (248)
404 PF12761 End3: Actin cytoskele 42.5 1.4E+02 0.0031 30.3 8.7 32 546-577 163-194 (195)
405 KOG0239 Kinesin (KAR3 subfamil 42.4 6.9E+02 0.015 30.2 16.7 13 619-631 300-312 (670)
406 smart00806 AIP3 Actin interact 42.3 5.7E+02 0.012 29.1 17.8 101 453-565 203-325 (426)
407 PF05384 DegS: Sensor protein 42.2 3.5E+02 0.0075 26.6 15.8 66 512-577 88-153 (159)
408 KOG0981 DNA topoisomerase I [R 42.2 2.6E+02 0.0057 32.9 11.5 37 499-535 627-663 (759)
409 PF05804 KAP: Kinesin-associat 42.2 7.2E+02 0.016 30.3 19.5 207 54-325 444-651 (708)
410 PF14362 DUF4407: Domain of un 41.8 3.7E+02 0.008 28.6 12.4 17 309-326 46-62 (301)
411 KOG2264 Exostosin EXT1L [Signa 41.7 1.8E+02 0.0038 34.2 10.0 38 513-550 105-142 (907)
412 KOG2180 Late Golgi protein sor 41.7 99 0.0022 37.0 8.4 20 455-474 39-58 (793)
413 PLN03200 cellulose synthase-in 41.6 1.1E+03 0.024 32.4 19.4 250 1-316 446-718 (2102)
414 PF09763 Sec3_C: Exocyst compl 41.6 6.1E+02 0.013 30.4 15.5 50 507-556 29-78 (701)
415 PF04220 YihI: Der GTPase acti 41.5 17 0.00038 35.9 2.0 24 617-640 131-154 (169)
416 PF09738 DUF2051: Double stran 41.4 5E+02 0.011 28.2 14.1 40 600-647 149-188 (302)
417 PF12777 MT: Microtubule-bindi 41.3 2.2E+02 0.0047 31.1 10.8 13 352-364 173-185 (344)
418 cd00632 Prefoldin_beta Prefold 41.2 2.6E+02 0.0057 25.0 11.6 15 510-524 8-22 (105)
419 PF08657 DASH_Spc34: DASH comp 41.2 1.4E+02 0.0029 31.7 8.7 37 455-491 179-215 (259)
420 PRK14161 heat shock protein Gr 41.1 95 0.0021 31.0 7.2 43 509-551 20-62 (178)
421 TIGR01069 mutS2 MutS2 family p 41.1 5.3E+02 0.011 31.7 14.8 20 87-106 87-106 (771)
422 PF06810 Phage_GP20: Phage min 41.0 1.8E+02 0.004 28.3 9.1 22 508-529 27-48 (155)
423 PF10883 DUF2681: Protein of u 40.8 72 0.0016 28.3 5.5 35 509-543 24-58 (87)
424 COG4985 ABC-type phosphate tra 40.8 4.1E+02 0.0088 27.9 11.6 26 459-484 160-185 (289)
425 PF06705 SF-assemblin: SF-asse 40.7 4.3E+02 0.0094 27.3 18.1 12 603-614 151-162 (247)
426 KOG4360 Uncharacterized coiled 40.6 6.5E+02 0.014 29.4 18.3 18 466-483 162-179 (596)
427 KOG4436 Predicted GTPase activ 40.5 5.2E+02 0.011 31.8 13.9 121 509-641 814-937 (948)
428 PRK14160 heat shock protein Gr 40.2 1.1E+02 0.0024 31.5 7.6 46 506-551 59-104 (211)
429 PF04977 DivIC: Septum formati 40.2 73 0.0016 26.5 5.5 33 509-541 18-50 (80)
430 PRK03947 prefoldin subunit alp 40.1 3.2E+02 0.0069 25.6 13.9 24 460-483 10-33 (140)
431 KOG2483 Upstream transcription 39.9 1.2E+02 0.0027 31.6 8.0 71 411-491 68-140 (232)
432 PF10224 DUF2205: Predicted co 39.9 1.2E+02 0.0026 26.5 6.7 42 507-548 22-63 (80)
433 TIGR01730 RND_mfp RND family e 39.7 1.6E+02 0.0036 30.7 9.3 24 554-577 106-129 (322)
434 PF06120 Phage_HK97_TLTM: Tail 39.6 5.3E+02 0.012 28.0 14.4 33 511-543 77-109 (301)
435 PF09787 Golgin_A5: Golgin sub 39.3 6.7E+02 0.014 29.1 16.6 21 456-476 221-241 (511)
436 PRK13169 DNA replication intia 39.2 1.2E+02 0.0026 28.1 7.0 32 547-578 19-50 (110)
437 KOG2391 Vacuolar sorting prote 39.1 1.7E+02 0.0038 32.1 9.2 23 507-529 252-274 (365)
438 TIGR02894 DNA_bind_RsfA transc 38.9 2E+02 0.0043 28.4 8.8 11 530-540 105-115 (161)
439 PF03961 DUF342: Protein of un 38.8 97 0.0021 35.1 7.8 22 509-530 335-356 (451)
440 PRK14140 heat shock protein Gr 38.8 1.5E+02 0.0032 30.1 8.2 46 506-551 35-80 (191)
441 PRK00409 recombination and DNA 38.8 6.5E+02 0.014 30.9 15.2 22 85-106 87-108 (782)
442 PF06476 DUF1090: Protein of u 38.8 3.3E+02 0.0071 25.3 11.3 22 559-580 72-93 (115)
443 COG2900 SlyX Uncharacterized p 38.7 1.6E+02 0.0035 25.3 7.0 27 505-531 19-45 (72)
444 PF13863 DUF4200: Domain of un 38.7 3.1E+02 0.0067 25.0 15.4 47 531-577 62-108 (126)
445 PRK05431 seryl-tRNA synthetase 38.6 2E+02 0.0044 32.5 10.2 32 547-578 70-101 (425)
446 TIGR00998 8a0101 efflux pump m 38.4 5.1E+02 0.011 27.5 17.4 21 464-484 81-101 (334)
447 PF02183 HALZ: Homeobox associ 38.3 1.2E+02 0.0027 23.5 5.9 28 511-538 8-35 (45)
448 PF15188 CCDC-167: Coiled-coil 38.3 1.3E+02 0.0027 26.7 6.6 19 509-527 6-24 (85)
449 PRK10803 tol-pal system protei 38.2 1.9E+02 0.0041 30.5 9.3 60 505-564 37-96 (263)
450 PLN02939 transferase, transfer 38.2 6.8E+02 0.015 31.6 15.1 12 566-577 326-337 (977)
451 cd07666 BAR_SNX7 The Bin/Amphi 38.2 5E+02 0.011 27.3 12.6 27 457-487 147-173 (243)
452 TIGR03545 conserved hypothetic 38.1 4.3E+02 0.0093 31.1 13.0 103 470-615 164-272 (555)
453 PRK14162 heat shock protein Gr 37.9 1.2E+02 0.0026 30.8 7.4 45 507-551 38-82 (194)
454 PF02994 Transposase_22: L1 tr 37.9 56 0.0012 36.3 5.6 12 461-472 60-71 (370)
455 PRK15178 Vi polysaccharide exp 37.5 6.8E+02 0.015 28.6 15.7 16 332-347 137-152 (434)
456 TIGR00414 serS seryl-tRNA synt 37.4 4.4E+02 0.0096 29.7 12.6 59 414-488 4-62 (418)
457 PF05700 BCAS2: Breast carcino 37.2 4.4E+02 0.0095 27.0 11.6 100 455-578 103-217 (221)
458 PF05377 FlaC_arch: Flagella a 37.2 77 0.0017 25.8 4.7 34 545-578 2-35 (55)
459 PF10165 Ric8: Guanine nucleot 37.0 53 0.0011 37.3 5.3 66 30-109 1-75 (446)
460 TIGR02971 heterocyst_DevB ABC 36.8 5.4E+02 0.012 27.3 13.8 117 507-626 54-174 (327)
461 PF04102 SlyX: SlyX; InterPro 36.7 1.6E+02 0.0035 24.6 6.9 13 564-576 39-51 (69)
462 PF13094 CENP-Q: CENP-Q, a CEN 36.4 2.8E+02 0.006 26.8 9.5 42 526-567 38-79 (160)
463 PRK00846 hypothetical protein; 36.3 2.9E+02 0.0063 24.0 9.1 51 528-578 12-62 (77)
464 KOG1832 HIV-1 Vpr-binding prot 36.2 17 0.00036 44.2 1.1 13 312-326 813-825 (1516)
465 KOG2129 Uncharacterized conser 36.1 7E+02 0.015 28.4 16.3 130 458-616 167-327 (552)
466 PF05103 DivIVA: DivIVA protei 36.1 71 0.0015 29.3 5.2 35 453-490 18-52 (131)
467 KOG1265 Phospholipase C [Lipid 35.7 7.3E+02 0.016 31.0 14.2 24 455-478 1025-1048(1189)
468 PF05103 DivIVA: DivIVA protei 35.6 31 0.00066 31.8 2.7 6 507-512 20-25 (131)
469 PF03978 Borrelia_REV: Borreli 35.4 4.4E+02 0.0096 25.9 11.3 78 537-636 48-127 (160)
470 PF10267 Tmemb_cc2: Predicted 35.4 4.9E+02 0.011 29.4 12.3 43 507-549 275-318 (395)
471 PF01920 Prefoldin_2: Prefoldi 35.3 3E+02 0.0066 24.0 11.1 84 511-617 1-106 (106)
472 PLN02678 seryl-tRNA synthetase 35.3 2.2E+02 0.0049 32.5 9.9 32 547-578 75-106 (448)
473 PRK14163 heat shock protein Gr 35.2 1.3E+02 0.0028 31.1 7.2 45 507-551 39-83 (214)
474 PF06637 PV-1: PV-1 protein (P 34.9 7E+02 0.015 28.1 15.4 32 455-486 284-315 (442)
475 KOG0943 Predicted ubiquitin-pr 34.7 17 0.00037 45.3 1.0 11 10-20 909-919 (3015)
476 KOG0163 Myosin class VI heavy 34.6 9.6E+02 0.021 29.5 16.2 17 147-163 476-492 (1259)
477 CHL00019 atpF ATP synthase CF0 34.5 4.6E+02 0.01 25.8 16.2 21 595-615 132-152 (184)
478 PF06632 XRCC4: DNA double-str 34.5 4E+02 0.0087 29.4 11.3 23 610-632 185-207 (342)
479 PLN02678 seryl-tRNA synthetase 34.3 4.1E+02 0.009 30.4 11.8 29 460-488 37-65 (448)
480 KOG2010 Double stranded RNA bi 34.3 2.1E+02 0.0045 31.3 8.7 29 458-486 149-177 (405)
481 PRK00888 ftsB cell division pr 34.2 1.2E+02 0.0025 27.7 6.1 28 509-536 35-62 (105)
482 PTZ00429 beta-adaptin; Provisi 33.6 5.6E+02 0.012 31.3 13.4 30 117-146 139-169 (746)
483 PF05546 She9_MDM33: She9 / Md 33.5 5.5E+02 0.012 26.4 16.9 119 462-611 1-130 (207)
484 PRK14155 heat shock protein Gr 33.4 1.1E+02 0.0024 31.4 6.4 46 509-554 14-59 (208)
485 PF10205 KLRAQ: Predicted coil 33.3 3.8E+02 0.0083 24.5 10.5 67 508-574 5-71 (102)
486 PF10805 DUF2730: Protein of u 33.3 3.2E+02 0.0068 24.8 8.8 63 514-576 34-98 (106)
487 PF06156 DUF972: Protein of un 33.3 1.6E+02 0.0035 27.0 6.9 43 507-549 14-56 (107)
488 PF01486 K-box: K-box region; 33.2 3.5E+02 0.0075 24.0 11.0 89 463-575 12-100 (100)
489 PF04048 Sec8_exocyst: Sec8 ex 33.2 4.3E+02 0.0093 25.1 11.9 128 410-562 12-142 (142)
490 KOG2751 Beclin-like protein [S 33.1 7.8E+02 0.017 28.1 13.9 105 454-577 141-266 (447)
491 KOG0982 Centrosomal protein Nu 33.1 7.9E+02 0.017 28.1 17.7 154 456-638 261-415 (502)
492 TIGR03545 conserved hypothetic 32.9 5.1E+02 0.011 30.5 12.6 101 507-631 163-270 (555)
493 PF06103 DUF948: Bacterial pro 32.7 3.3E+02 0.0071 23.5 10.4 69 510-578 21-89 (90)
494 TIGR00634 recN DNA repair prot 32.5 8.6E+02 0.019 28.4 19.6 171 458-637 170-371 (563)
495 PF10211 Ax_dynein_light: Axon 32.5 4.1E+02 0.0088 26.7 10.3 67 465-555 122-189 (189)
496 KOG4807 F-actin binding protei 32.5 7.7E+02 0.017 27.8 15.8 152 469-631 297-486 (593)
497 PF15353 HECA: Headcase protei 32.3 38 0.00083 31.0 2.6 26 4-29 54-80 (107)
498 PLN02320 seryl-tRNA synthetase 32.2 2.5E+02 0.0053 32.7 9.6 69 508-576 93-163 (502)
499 PF03148 Tektin: Tektin family 32.1 7.5E+02 0.016 27.5 18.7 152 438-622 194-362 (384)
500 PF05600 DUF773: Protein of un 32.0 3.1E+02 0.0068 31.8 10.5 70 454-560 430-499 (507)
No 1
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-93 Score=787.24 Aligned_cols=421 Identities=23% Similarity=0.361 Sum_probs=362.9
Q ss_pred hhHhhhhc----CCCCCCchhHHHHHHHHHHHhhHhccCCCCCCCCCccchhhhHHHHHhhcHHHHHHHHHhccCCCchH
Q 006200 6 LISILKLR----GSAYSFTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVESQWAPVA 81 (657)
Q Consensus 6 ~~~~l~~~----~~~~~W~~Qk~~N~~~~L~ivrllV~~g~~~~~~~~~~~~~nQ~~l~q~glL~~ll~La~~s~~~p~~ 81 (657)
|..||..+ |+.++|++||++|++++|+|||.||+|||+++ ++++||++|.++++|..||.+.| ++++|++
T Consensus 259 L~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~-----~~~q~qk~l~ss~ll~~Lc~il~-~~~vp~d 332 (970)
T KOG0946|consen 259 LLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSS-----ITHQNQKALVSSHLLDVLCTILM-HPGVPAD 332 (970)
T ss_pred HHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHH-----HHHHHHHHHHHcchHHHHHHHHc-CCCCcHh
Confidence 44555665 58899999999999999999999999999865 47899999999999999999999 5679999
Q ss_pred hHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCch-hHHhHHHHHHHHhhcCChhhHHHHHhhh
Q 006200 82 VRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSM-QEFLAADRIFNSFCEKNPDGQAMLTSTL 160 (657)
Q Consensus 82 Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~-~~r~AA~~cf~ayl~~N~~~q~~L~~tl 160 (657)
|++++|+|+|+|||||+.||++|+++++|+.|+|+|+|++|+|+|.++..+ .+|||+.|||+||||+|.++|..++.|+
T Consensus 333 IltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~l~tl 412 (970)
T KOG0946|consen 333 ILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKFLKTL 412 (970)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 999999999999999999999999999999887899999999999877765 7899999999999999999999999999
Q ss_pred cCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHhccccccCCCCCCCCcchH
Q 006200 161 IPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLM 240 (657)
Q Consensus 161 ~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~dn~~~Ke~al~V~l~~~~~~~~~~e~ll 240 (657)
+|++.... +.++++|.++|.++++ .|||..||+|++|||+|.+|.+.|++++||++..++ +.+|++++
T Consensus 413 lp~~~nst------~Nsl~ag~l~~~~l~s----~d~~~nwFt~v~lmh~l~dn~~~kEeLlrV~l~~~~--gn~p~tlL 480 (970)
T KOG0946|consen 413 LPSSTNST------SNSLSAGQLLLVGLSS----TDSLDNWFTAVILMHLLQDNDQLKEELLRVPLAVDT--GNDPDTLL 480 (970)
T ss_pred hhhhcccc------ccchhhhhHHHHhhcc----chHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcccC--CCCchHHH
Confidence 99876532 2368999999999987 456899999999999999999999999999999886 67899998
Q ss_pred HHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhhcChHHHHHhhcCCChHHHHHHHhhCC--CC-chHhHHHHHHH
Q 006200 241 HRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELVSNP--SA-TVCTRGLAAVL 317 (657)
Q Consensus 241 ~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~e~p~AV~~FL~~~s~l~~L~~~i~~~--~~-~~lVqGL~A~L 317 (657)
.++++++.+.+..| ..+++|||||||+|||+||+||+|||++.++++||+.++.++ ++ +.+||||||||
T Consensus 481 ~~~ct~~~~~~t~r--------~qt~vglLmlL~~WL~~cp~AV~dFLs~~s~iq~Ltt~l~~n~~~Ese~viqgl~A~l 552 (970)
T KOG0946|consen 481 FQQCTNLKLQGTSR--------HQTRVGLLMLLITWLYGCPDAVKDFLSESSIIQYLTTQLMDNQGSESEQVIQGLCAFL 552 (970)
T ss_pred HHHHHHHHHHhhhh--------HHHHHHHHHHHHHHHcCCcHHHHHHHccccHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 88666655333233 368899999999999999999999999999999999999665 44 89999999999
Q ss_pred hhhhHhhcCCCCCCCChhHHHHHHHhhcchhhHHHHHHHHhcccccccCCCccccccchhhhhhhhhhhhcccccccCCC
Q 006200 318 LGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQKSFLFSSAKPTQALKPLTRSTAASMAEIEDIDDSDLSDK 397 (657)
Q Consensus 318 LG~Cv~Yn~ss~~~~ds~~l~~lI~~RiG~d~y~~kl~~lr~~~~f~~~~~~~~~~~l~r~~~~~~~~~~~~~~~d~~~~ 397 (657)
||+||+||+.+.| +.+.+++++|+||||+|+|++||.+|++|++|+.+.. ..+|...
T Consensus 553 Lgl~~~fn~~s~p-~~r~~~~~lItkrvGke~f~srL~~lsr~e~ysra~~--kqq~~l~-------------------- 609 (970)
T KOG0946|consen 553 LGLCYYFNDNSSP-VSRSDVYQLITKRVGKENFISRLQRLSRHELYSRASM--KQQPQLK-------------------- 609 (970)
T ss_pred HHHHHHcCcccCc-ccHHHHHHHHHHHHhHHHHHHHHHHhhHhHHHHHHhh--ccCccCC--------------------
Confidence 9999999998877 8899999999999999999999999999999997533 2232110
Q ss_pred CcCCCCcccccccHHHHHHHHHhHHHHHHhhhhhcCCCCCcccc--chhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHH
Q 006200 398 ENEDHPLLSSMFDKHFVDIIKSLESSIRENIVDVYSRPKSEVAV--VPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKL 475 (657)
Q Consensus 398 ~~~~~~l~~v~FD~~Fv~f~K~n~~~I~~ai~~~~~dP~~e~~~--~~~~~~~~~~~~s~~~v~~lk~~i~~Q~~eiq~L 475 (657)
+.|++|||++|+++||+++++|.+++ +++|+.+.-. ....++ .-...+..||..|+++|-+|+.+
T Consensus 610 -----~~~k~~lD~~f~kL~kele~~i~k~l---s~~~eee~~~~~~~k~~e-----~l~~~~~kyK~lI~~lD~~~e~l 676 (970)
T KOG0946|consen 610 -----SNTKLALDFEFKKLFKELEGLIAKLL---SSKTEEEEQTQLAEKYHE-----ELDDIQQKYKGLIRELDYQIENL 676 (970)
T ss_pred -----CCchhhhhHHHHHHHHHHHHHHHHHh---cCCCccchhhHHHHHHHH-----HHHHHHHHHHHHHHHHhhHHHHH
Confidence 12489999999999999999999999 5777765421 111222 23557889999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 006200 476 LGRNATLAEELAK 488 (657)
Q Consensus 476 ~~~~~~L~~~l~~ 488 (657)
++.+..|+-+.++
T Consensus 677 kQ~~~~l~~e~ee 689 (970)
T KOG0946|consen 677 KQMEKELQVENEE 689 (970)
T ss_pred HHHHHHHHHHHHH
Confidence 9988877766543
No 2
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=100.00 E-value=1.1e-75 Score=617.71 Aligned_cols=293 Identities=30% Similarity=0.414 Sum_probs=217.0
Q ss_pred cChhhHHHhhccccCC------------CCccchHHHHHHHHHhccCchh---HHhHHHHHHHHhhcCChhhHHHHHhhh
Q 006200 96 AHPKNRDVLASKVLGE------------EPQVEAALNSILRIILRTSSMQ---EFLAADRIFNSFCEKNPDGQAMLTSTL 160 (657)
Q Consensus 96 gn~~nQ~~fa~~~vp~------------~p~~~pal~~LL~~~L~~~~~~---~r~AA~~cf~ayl~~N~~~q~~L~~tl 160 (657)
||+.||++|++++||+ .++++||+++||+|||+.+++| .|+||+|||||||++|+++|+.+++|+
T Consensus 1 gN~~~Q~~Fa~~~vp~~dp~~~~~~~~~~~~~~pvi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~ 80 (312)
T PF04869_consen 1 GNATNQEEFAQIDVPYFDPSLPGQVQAPSDPPVPVIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTL 80 (312)
T ss_dssp --HHHHHHHHC-EE-------------SSSS-EEHHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTT
T ss_pred CCHHHHHHHhcceeecccccccccccCCCCCCccHHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8999999999999963 1346999999999999999765 469999999999999999999888898
Q ss_pred cCCCCCCCCCCCcccccCChhHHHhhhcccCCC--CcchhHHHHHHHHHHHHhcCCHHHHHHHhccccccCCCCCCCCcc
Q 006200 161 IPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGES--DGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEP 238 (657)
Q Consensus 161 ~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~--~~dpy~~wfAa~iL~hll~dn~~~Ke~al~V~l~~~~~~~~~~e~ 238 (657)
+|.+.+.++ .+.+++||++|+++++ +.|||++||||++|+|+|++|+++|+++|+|+ +++++++++|++
T Consensus 81 i~~~~~~~~--------~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~~Ke~al~V~-~~~~~~ge~~vt 151 (312)
T PF04869_consen 81 IPSYASGNS--------DDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPEAKEQALRVT-EGDESSGEEPVT 151 (312)
T ss_dssp SSTT--SS----------SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HHHHHHHTT---EE--STTS--EE
T ss_pred hccCCCCcc--------cchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHHHHHHHHccc-CCCCCCCCCccc
Confidence 887755321 3445559999997765 67999999999999999999999999999998 677666888899
Q ss_pred hHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhhcChHHHHHhhcCCChHHHHHHHhhCC-CCchHhHHHHHHH
Q 006200 239 LMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELVSNP-SATVCTRGLAAVL 317 (657)
Q Consensus 239 ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~e~p~AV~~FL~~~s~l~~L~~~i~~~-~~~~lVqGL~A~L 317 (657)
++|+|..+|. ++..++.| .++++|||||||+||||||+||+|||++++||++|++++.+. +++++||||||||
T Consensus 152 liq~v~~lL~-~~l~~~~d-----~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~L 225 (312)
T PF04869_consen 152 LIQTVSELLI-ASLRRNSD-----PRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFL 225 (312)
T ss_dssp HHHHHHHHTT-T----T-------HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHH
T ss_pred HHHHHHHHHH-hhhhcCCc-----hhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHH
Confidence 9999988877 44444555 577888999999999999999999999999999999998655 8899999999999
Q ss_pred hhhhHhhcCCCCCCCChhHHHHHHHhhcchhhHHHHHHHHhcccccccCC-CccccccchhhhhhhhhhhhcccccccCC
Q 006200 318 LGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQKSFLFSSAK-PTQALKPLTRSTAASMAEIEDIDDSDLSD 396 (657)
Q Consensus 318 LG~Cv~Yn~ss~~~~ds~~l~~lI~~RiG~d~y~~kl~~lr~~~~f~~~~-~~~~~~~l~r~~~~~~~~~~~~~~~d~~~ 396 (657)
|||||+|| +.+++++|++|+++|++|||+|+|++||++||+||+|+++. +++...+.
T Consensus 226 LGicyef~-~~~s~~~R~~l~~ll~~riG~d~y~~kl~~lr~~~~f~~~~~~~~~~~~~--------------------- 283 (312)
T PF04869_consen 226 LGICYEFS-TKDSPIPRATLHPLLTKRIGRDNYFSKLEQLRKSPLFRDAEKPPQLNPSS--------------------- 283 (312)
T ss_dssp HHHHHHT--S-SCCC-HHHHHHHHHHHT-HHHHHHHHHCCCCSTTHHHHTT-SS---SS---------------------
T ss_pred HHHHHHhc-CCCCCcCHHHHHHHHHHhcCHHHHHHHHHHHhcChhhhccccCCCCCCCC---------------------
Confidence 99999999 55567999999999999999999999999999999999876 33322110
Q ss_pred CCcCCCCcccccccHHHHHHHHHhHHHHHHhh
Q 006200 397 KENEDHPLLSSMFDKHFVDIIKSLESSIRENI 428 (657)
Q Consensus 397 ~~~~~~~l~~v~FD~~Fv~f~K~n~~~I~~ai 428 (657)
++.++|++||||+||+|||+||+||+|+|
T Consensus 284 ---~~~~lp~v~FD~~Fv~f~K~n~~rI~rai 312 (312)
T PF04869_consen 284 ---DDSGLPDVYFDWEFVEFFKDNYSRIQRAI 312 (312)
T ss_dssp ---GG----G----HHHHHHHHHHHHHHHHHC
T ss_pred ---CCccceeeeccHHHHHHHHHhHHHHHHhC
Confidence 13457899999999999999999999986
No 3
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=99.73 E-value=2.1e-17 Score=155.63 Aligned_cols=67 Identities=45% Similarity=0.591 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHhhhhhhhHHHHHHHHHHcCchhhhhhccCCCCCCCCCCCccc
Q 006200 589 EAIKAEAREEAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVEKLLEGIGDDMGLPEDDEEE 655 (657)
Q Consensus 589 ~~~~~~~~~e~~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~lg~~v~~~~~~~~~~~~~~~~~~~~ 655 (657)
+..++..+++++++.++||+||||||+|+++|+++||.||++||++||+|+++++++|+++||++++
T Consensus 68 ~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~eVSddE~~~d~~dd~edd~~de 134 (136)
T PF04871_consen 68 EAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKELGEEVSDDEDSEDDEDDDEDDDEDE 134 (136)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCccCCccccccCCCCCCccCCC
Confidence 3334444556778999999999999999999999999999999999999997744333333333333
No 4
>PRK09039 hypothetical protein; Validated
Probab=97.23 E-value=0.017 Score=62.91 Aligned_cols=154 Identities=16% Similarity=0.154 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 461 LKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSM 540 (657)
Q Consensus 461 lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~ 540 (657)
|.+.|..++++|.+|+.+++.|.+-+.=..+ .....+.++.+|+.+++.+++..+.|+...+........
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L~e~L~le~~----------~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~ 113 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAELADLLSLERQ----------GNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAA 113 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcch
Confidence 6788999999999999999998876532221 111234455555555555555444444433322222334
Q ss_pred HHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcCCCCCCcccHHHHHHH--HHHHHHHHHHHhHhHHHHHhhhhh
Q 006200 541 YRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAE--AREEAQKESEAELNDLLVCLGQEQ 618 (657)
Q Consensus 541 ~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~~~~~~~~~l~~~~~~--~~~e~~~~~~~e~~dLl~ll~d~~ 618 (657)
.+..+..++.+|......|++...++.+|.+|+.+||.++..- +..|++++++ +....+..++++++.. +++..
T Consensus 114 ~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~l-e~~L~~ae~~~~~~~~~i~~L~~~L~~a---~~~~~ 189 (343)
T PRK09039 114 AEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAAL-EAALDASEKRDRESQAKIADLGRRLNVA---LAQRV 189 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 4555566666666666666666666667777777776543200 0112222221 2333345555554444 34455
Q ss_pred hhHHHHHHHH
Q 006200 619 SKVEKLSARL 628 (657)
Q Consensus 619 ~K~~~~k~~L 628 (657)
..+.+||..+
T Consensus 190 ~~l~~~~~~~ 199 (343)
T PRK09039 190 QELNRYRSEF 199 (343)
T ss_pred HHHHHhHHHH
Confidence 6667776644
No 5
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.78 E-value=0.12 Score=61.16 Aligned_cols=174 Identities=22% Similarity=0.318 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcch----------hhhhhccccHHHHHHH----HHHHHHH
Q 006200 455 KDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQS----------EQRASGALDRVQVETL----RKDLHEA 520 (657)
Q Consensus 455 ~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~----------~~~~~~~~~~~q~e~L----~~~L~~~ 520 (657)
.+-.++|.-.++.-.+.+.+|.-++..|+++.+..|++....+ .+|-+.+. +.+..| +...+.+
T Consensus 324 EERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdal--VrLRDlsA~ek~d~qK~ 401 (1243)
T KOG0971|consen 324 EERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDAL--VRLRDLSASEKQDHQKL 401 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHH--HHHHhcchHHHHHHHHH
Confidence 4456777777777778888888888888888876665442111 11111100 000000 1111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHH----------HHhHHHHHhHhHHHHHHHHHcCCCCCCcccHHH
Q 006200 521 SQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSD----------AYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEA 590 (657)
Q Consensus 521 ~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~----------~~~~Le~~~~~le~e~~~lr~~~~~~~~~~l~~ 590 (657)
.+..|..+.|+..++.-.+.++.....+|+-+..|+. .+.+|--.+..+|+.++.|++.++ |+|+
T Consensus 402 ~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~-----dlEa 476 (1243)
T KOG0971|consen 402 QKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVG-----DLEA 476 (1243)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHH-----HHHH
Confidence 2333333334444444444444444444444444442 223333333334444444443211 3333
Q ss_pred HHH------H--------------HHHHHHHHHHHhHhHHHHHhhhhhhhHHHHHHHHHHcCchh
Q 006200 591 IKA------E--------------AREEAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDV 635 (657)
Q Consensus 591 ~~~------~--------------~~~e~~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~lg~~v 635 (657)
++. + ...-++++++++.++-+.-+-|.+-.+.|||.++..|..-.
T Consensus 477 lee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdql 541 (1243)
T KOG0971|consen 477 LEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQL 541 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 221 0 11134688899999999999999999999999887775433
No 6
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.69 E-value=0.079 Score=62.81 Aligned_cols=33 Identities=27% Similarity=0.336 Sum_probs=21.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 454 DKDYVKRLKAFVEKQCSEIQKLLGRNATLAEEL 486 (657)
Q Consensus 454 s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l 486 (657)
..+.+.+|..-|++-..+|+..++.=..|..++
T Consensus 416 ~~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqi 448 (697)
T PF09726_consen 416 EPDAISRLEADVKKLRAELQSSRQSEQELRSQI 448 (697)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 455667777777777777776666544444443
No 7
>PRK11637 AmiB activator; Provisional
Probab=96.56 E-value=0.23 Score=55.71 Aligned_cols=29 Identities=14% Similarity=0.255 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 458 VKRLKAFVEKQCSEIQKLLGRNATLAEEL 486 (657)
Q Consensus 458 v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l 486 (657)
+++++..|+++.++|++++.+...+..++
T Consensus 49 l~~l~~qi~~~~~~i~~~~~~~~~~~~~l 77 (428)
T PRK11637 49 LKSIQQDIAAKEKSVRQQQQQRASLLAQL 77 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666665555555555544
No 8
>PRK11637 AmiB activator; Provisional
Probab=96.39 E-value=0.34 Score=54.27 Aligned_cols=28 Identities=7% Similarity=-0.064 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 460 RLKAFVEKQCSEIQKLLGRNATLAEELA 487 (657)
Q Consensus 460 ~lk~~i~~Q~~eiq~L~~~~~~L~~~l~ 487 (657)
.++..++...++|+++++++..+..++.
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~ 71 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRA 71 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777666553
No 9
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.97 E-value=0.44 Score=58.23 Aligned_cols=72 Identities=22% Similarity=0.315 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhHHH--------------hHHH
Q 006200 507 RVQVETLRKDLHEAS------QRLEILKEEK--------AQIESDSSMYRNLAAKMESDLKS--------------LSDA 558 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~------~~~e~l~~e~--------~~~eae~~~~~~~a~~le~~l~~--------------ls~~ 558 (657)
+.+++.+++++++++ ++++.+++.+ +..+++++...+...+++.++++ +...
T Consensus 864 ~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~ 943 (1293)
T KOG0996|consen 864 EEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKK 943 (1293)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHH
Confidence 455666666666662 3333333332 33344444445555555444444 4455
Q ss_pred HhHHHHHhHhHHHHHHHHHc
Q 006200 559 YNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 559 ~~~Le~~~~~le~e~~~lr~ 578 (657)
++.++.++...++|++.|.+
T Consensus 944 l~~le~~~~~~e~e~~~L~e 963 (1293)
T KOG0996|consen 944 LSELEREIEDTEKELDDLTE 963 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777777765
No 10
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.90 E-value=0.56 Score=57.14 Aligned_cols=123 Identities=17% Similarity=0.295 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc-h---hhhhhccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 455 KDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQ-S---EQRASGALDRVQVETLRKDLHEASQRLEILKEE 530 (657)
Q Consensus 455 ~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~-~---~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e 530 (657)
.+-++.|.+.|+++...+..++++++..+.+++....+...+ + ..+..--..+.+..+++.+..+.+..+.+++.+
T Consensus 294 qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~ 373 (1074)
T KOG0250|consen 294 QEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKE 373 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888888888888776555322111 0 011000011233333344444444444444555
Q ss_pred HHHHHHHHHHHHHHH-HHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 531 KAQIESDSSMYRNLA-AKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 531 ~~~~eae~~~~~~~a-~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
...++..++++++.. +.+..++.+....++.|+.++..++.++..|+
T Consensus 374 ~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~ 421 (1074)
T KOG0250|consen 374 VDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLR 421 (1074)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555544 44444444444555555555555555555555
No 11
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.76 E-value=0.071 Score=53.43 Aligned_cols=115 Identities=19% Similarity=0.235 Sum_probs=50.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 453 SDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKA 532 (657)
Q Consensus 453 ~s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~ 532 (657)
.....+.++...+.....++.++......+..+|....... ...+.++......|..+...+..|+.++.
T Consensus 64 ~~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l----------~~l~~~~~~~~~~l~~l~~~~~~L~~~~~ 133 (194)
T PF08614_consen 64 VSSAQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDEL----------QELEKELSEKERRLAELEAELAQLEEKIK 133 (194)
T ss_dssp ------------------------------------------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccc----------chhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777777777666666654333100 12234445555566666666667777777
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 533 QIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 533 ~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
.++.++.......+.+..++..|+..++.+|..+.++++|++.|=
T Consensus 134 ~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv 178 (194)
T PF08614_consen 134 DLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELV 178 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777788888888888888888888888888887774
No 12
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.72 E-value=0.8 Score=56.94 Aligned_cols=26 Identities=12% Similarity=0.088 Sum_probs=11.2
Q ss_pred HHHHHHhHhHHHHHhhhhhhhHHHHH
Q 006200 600 QKESEAELNDLLVCLGQEQSKVEKLS 625 (657)
Q Consensus 600 ~~~~~~e~~dLl~ll~d~~~K~~~~k 625 (657)
+...+++++++-.-+.....+...++
T Consensus 471 l~~~~~~l~~l~~~l~~l~~~~~~l~ 496 (1164)
T TIGR02169 471 LYDLKEEYDRVEKELSKLQRELAEAE 496 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443333
No 13
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.70 E-value=0.88 Score=47.28 Aligned_cols=44 Identities=30% Similarity=0.380 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006200 509 QVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDL 552 (657)
Q Consensus 509 q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l 552 (657)
+.+.++..+...+...+.++.+..++++++...++...+.+..+
T Consensus 39 e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 39 ELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555555555555444
No 14
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.69 E-value=0.74 Score=52.93 Aligned_cols=26 Identities=35% Similarity=0.424 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 461 LKAFVEKQCSEIQKLLGRNATLAEEL 486 (657)
Q Consensus 461 lk~~i~~Q~~eiq~L~~~~~~L~~~l 486 (657)
+..++++-.++..+|...+..|+.++
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~ 166 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEV 166 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666666666654
No 15
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.69 E-value=0.93 Score=56.39 Aligned_cols=26 Identities=31% Similarity=0.326 Sum_probs=10.0
Q ss_pred HHHhHhHHHHHhhhhhhhHHHHHHHH
Q 006200 603 SEAELNDLLVCLGQEQSKVEKLSARL 628 (657)
Q Consensus 603 ~~~e~~dLl~ll~d~~~K~~~~k~~L 628 (657)
.+.++..+--=+.+...++.+.+.++
T Consensus 467 ~~~~l~~~~~~l~~l~~~l~~l~~~~ 492 (1164)
T TIGR02169 467 YEQELYDLKEEYDRVEKELSKLQREL 492 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444443333333
No 16
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.65 E-value=0.93 Score=52.12 Aligned_cols=70 Identities=11% Similarity=0.121 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 508 VQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 508 ~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
..++.++.+++......+.++.++.+++.++.+++......+..|+++..+++.++..+..+++..+-++
T Consensus 213 ~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~ 282 (562)
T PHA02562 213 ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYE 282 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567778888888888888888888888888888777777777788888888888888777777776664
No 17
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.62 E-value=1 Score=55.88 Aligned_cols=14 Identities=29% Similarity=0.299 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHcCc
Q 006200 620 KVEKLSARLLELGE 633 (657)
Q Consensus 620 K~~~~k~~L~~lg~ 633 (657)
++..+++++.++|.
T Consensus 966 ~~~~l~~~i~~lg~ 979 (1179)
T TIGR02168 966 DEEEARRRLKRLEN 979 (1179)
T ss_pred CHHHHHHHHHHHHH
Confidence 34455555555555
No 18
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.61 E-value=1.2 Score=44.53 Aligned_cols=98 Identities=24% Similarity=0.271 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 468 QCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAK 547 (657)
Q Consensus 468 Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~ 547 (657)
-..--+.|..++..|+..+...- -.++....++..|+.++..+++..+.. ..++.|++++|..+..
T Consensus 13 L~~~n~~L~~en~kL~~~ve~~e----------e~na~L~~e~~~L~~q~~s~Qqal~~a----K~l~eEledLk~~~~~ 78 (193)
T PF14662_consen 13 LQLNNQKLADENAKLQRSVETAE----------EGNAQLAEEITDLRKQLKSLQQALQKA----KALEEELEDLKTLAKS 78 (193)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 33334445556666665442211 112344667788888887776654432 3578889999999999
Q ss_pred HHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcC
Q 006200 548 MESDLKSLSDAYNSLEQTNFHLEKEVKALKSG 579 (657)
Q Consensus 548 le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~ 579 (657)
+|..-++|..+-.++|.++.+|..++..|.++
T Consensus 79 lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqee 110 (193)
T PF14662_consen 79 LEEENRSLLAQARQLEKEQQSLVAEIETLQEE 110 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999875
No 19
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.50 E-value=1.9 Score=49.42 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 454 DKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELA 487 (657)
Q Consensus 454 s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~ 487 (657)
..++-.+|+....-+..+|..++..+..|.+++.
T Consensus 219 ~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~ 252 (581)
T KOG0995|consen 219 EDELKHRLEKYFTSIANEIEDLKKTNRELEEMIN 252 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888899999999999999999885
No 20
>PRK09039 hypothetical protein; Validated
Probab=95.50 E-value=1.3 Score=48.39 Aligned_cols=42 Identities=14% Similarity=0.121 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 508 VQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKME 549 (657)
Q Consensus 508 ~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le 549 (657)
.+...|.++|.+.+........+...++++++.++.....++
T Consensus 116 ~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le 157 (343)
T PRK09039 116 GRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALE 157 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444434444444444444444433333
No 21
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.43 E-value=1.1 Score=53.28 Aligned_cols=134 Identities=25% Similarity=0.334 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 459 KRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDS 538 (657)
Q Consensus 459 ~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~ 538 (657)
+.|...|.+...+|..++..+..... +++.|.....+..+..+.++.++.+++.|+
T Consensus 30 ~~~~~~i~~l~~elk~~~~~~~~~~~------------------------e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ 85 (717)
T PF09730_consen 30 AYLQQRILELENELKQLRQELSNVQA------------------------ENERLSQLNQELRKECEDLELERKRLREEI 85 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666555555544444 345555566666666777777777777777
Q ss_pred HHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcCCCCCCcccHHHHHHH-------------HHHH---HHHH
Q 006200 539 SMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAE-------------AREE---AQKE 602 (657)
Q Consensus 539 ~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~~~~~~~~~l~~~~~~-------------~~~e---~~~~ 602 (657)
..||..-.++=.| |++||.+|..|.++|..||+.-. +.+..|-+ .-+| -+.=
T Consensus 86 ke~K~rE~rll~d-------yselEeENislQKqvs~Lk~sQv-----efE~~Khei~rl~Ee~~~l~~qlee~~rLk~i 153 (717)
T PF09730_consen 86 KEYKFREARLLQD-------YSELEEENISLQKQVSVLKQSQV-----EFEGLKHEIKRLEEEIELLNSQLEEAARLKEI 153 (717)
T ss_pred HHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777665555433 66677777777777766664110 12222211 1111 1233
Q ss_pred HHHhHhHHHHHhhhhhhhHHHHHHHH
Q 006200 603 SEAELNDLLVCLGQEQSKVEKLSARL 628 (657)
Q Consensus 603 ~~~e~~dLl~ll~d~~~K~~~~k~~L 628 (657)
+++-+++-|.-|-..-+-...+|+-|
T Consensus 154 ae~qleEALesl~~EReqk~~LrkEL 179 (717)
T PF09730_consen 154 AEKQLEEALESLKSEREQKNALRKEL 179 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666665555555666555
No 22
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.32 E-value=1.3 Score=55.08 Aligned_cols=7 Identities=29% Similarity=0.548 Sum_probs=2.8
Q ss_pred HHHHhhc
Q 006200 283 AVHCFLD 289 (657)
Q Consensus 283 AV~~FL~ 289 (657)
+|.+.+.
T Consensus 507 ~v~~~i~ 513 (1179)
T TIGR02168 507 GVKALLK 513 (1179)
T ss_pred HHHHHHh
Confidence 3444443
No 23
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.23 E-value=1.6 Score=52.16 Aligned_cols=28 Identities=36% Similarity=0.410 Sum_probs=22.8
Q ss_pred HHHHHhHhHHHHHhhhhhhhHHHHHHHH
Q 006200 601 KESEAELNDLLVCLGQEQSKVEKLSARL 628 (657)
Q Consensus 601 ~~~~~e~~dLl~ll~d~~~K~~~~k~~L 628 (657)
++.++|.|.||.-|.-+.+|...+..-|
T Consensus 583 ~e~~~~~e~L~~aL~amqdk~~~LE~sL 610 (697)
T PF09726_consen 583 KESEKDTEVLMSALSAMQDKNQHLENSL 610 (697)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567889999999999999988876643
No 24
>PRK02224 chromosome segregation protein; Provisional
Probab=95.12 E-value=0.83 Score=55.62 Aligned_cols=121 Identities=17% Similarity=0.224 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc----chhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 456 DYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGAS----QSEQRASGALDRVQVETLRKDLHEASQRLEILKEEK 531 (657)
Q Consensus 456 ~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~----~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~ 531 (657)
+.++.|++.+.+-..++.++..++..+..++......... ....+. .......++....++++....++.++.+.
T Consensus 468 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~~~~~~~l~~l~~~-~~~l~~~~~~~~e~le~~~~~~~~l~~e~ 546 (880)
T PRK02224 468 ETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEER-REDLEELIAERRETIEEKRERAEELRERA 546 (880)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5666666666666666666666666666554322210000 000000 00111223334444555555555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 532 AQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 532 ~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
..+++++..+...+..++.....+..++..++.++..++.++..+.
T Consensus 547 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le 592 (880)
T PRK02224 547 AELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE 592 (880)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666555555555555555555444444443
No 25
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.08 E-value=1.2 Score=54.38 Aligned_cols=33 Identities=24% Similarity=0.282 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006200 458 VKRLKAFVEKQCSEIQKLLGRNATLAEELAKIG 490 (657)
Q Consensus 458 v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~ 490 (657)
|.....++..+...|...+++...+++.+....
T Consensus 276 V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~ 308 (1074)
T KOG0250|consen 276 VNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQ 308 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666777777777777777665443
No 26
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=95.02 E-value=1.3 Score=47.86 Aligned_cols=152 Identities=15% Similarity=0.192 Sum_probs=80.1
Q ss_pred cHHHHHHHHHhccC-CCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccc------hHHHHHHHHHh--ccCchh
Q 006200 63 KALDNLLMLAVESQ-WAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVE------AALNSILRIIL--RTSSMQ 133 (657)
Q Consensus 63 glL~~ll~La~~s~-~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~------pal~~LL~~~L--~~~~~~ 133 (657)
.++..||++.+... .-+.++|+.|+.|+-.-..+|+..|..|.+-.+|..+... +.+.+|+..-. ..+...
T Consensus 34 pvi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~ 113 (312)
T PF04869_consen 34 PVIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYR 113 (312)
T ss_dssp EHHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHH
T ss_pred cHHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHH
Confidence 46788999988432 2589999999999999999999999999999998642211 23344433211 122223
Q ss_pred HHhHHHHHHHHhhcCChhhHHHHHhh-hcCCCCCCCCCCCcccccCChhHHHhhhcccCCC-CcchhHHHHHHHHHHHHh
Q 006200 134 EFLAADRIFNSFCEKNPDGQAMLTST-LIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGES-DGDLEVCCRAASVLSHIL 211 (657)
Q Consensus 134 ~r~AA~~cf~ayl~~N~~~q~~L~~t-l~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~-~~dpy~~wfAa~iL~hll 211 (657)
... |+.+|--.+++|++.|..+.+- ..+.+ .+..+++..+.+..-|...-. ..||...-.=-++|..-|
T Consensus 114 ~wf-Aa~il~hll~dn~~~Ke~al~V~~~~~~--------~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL 184 (312)
T PF04869_consen 114 CWF-AAVILMHLLRDNPEAKEQALRVTEGDES--------SGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWL 184 (312)
T ss_dssp HHH-HHHHHHHHHTT-HHHHHHHTT--EE--S--------TTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHhcCHHHHHHHHcccCCCCC--------CCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHH
Confidence 334 4455556788898888655543 11111 123446665554444433222 334433222234556666
Q ss_pred cCCHHHHHHHhc
Q 006200 212 MDNLQCKERVLR 223 (657)
Q Consensus 212 ~dn~~~Ke~al~ 223 (657)
.++|.+-.--+.
T Consensus 185 ~e~p~AV~~FL~ 196 (312)
T PF04869_consen 185 FECPDAVNDFLS 196 (312)
T ss_dssp TT-HHHHHHHHC
T ss_pred hCCHHHHHHHHc
Confidence 777766554444
No 27
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=94.89 E-value=2 Score=51.77 Aligned_cols=120 Identities=24% Similarity=0.317 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCCcchhhhhhccccHHHHHHHHHHHHH-------HHHHHHH
Q 006200 458 VKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGG----DGASQSEQRASGALDRVQVETLRKDLHE-------ASQRLEI 526 (657)
Q Consensus 458 v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~----~~~~~~~~~~~~~~~~~q~e~L~~~L~~-------~~~~~e~ 526 (657)
+++++-.|.+.+.+|..++.++..+..+...... -+.+-............+++.|+..|++ .+++++.
T Consensus 289 ~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~ 368 (775)
T PF10174_consen 289 MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEK 368 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777776666664311110 0000000000011223444444443333 3333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 527 LKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 527 l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
+..++.....|+.+++.....-+..++.|..+|..|+..+..-+.++..++
T Consensus 369 ~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k 419 (775)
T PF10174_consen 369 LQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEK 419 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555666666666666666666666666666666655555444444444
No 28
>PRK03918 chromosome segregation protein; Provisional
Probab=94.88 E-value=2.2 Score=51.94 Aligned_cols=10 Identities=0% Similarity=0.159 Sum_probs=4.1
Q ss_pred HHHHHHhhcc
Q 006200 337 IVDSISQKVG 346 (657)
Q Consensus 337 l~~lI~~RiG 346 (657)
+...|...+|
T Consensus 113 ~~~~i~~~~~ 122 (880)
T PRK03918 113 VREWVERLIP 122 (880)
T ss_pred HHHHHHHhcC
Confidence 3344444443
No 29
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.87 E-value=1.2 Score=41.56 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=28.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 453 SDKDYVKRLKAFVEKQCSEIQKLLGRNATLAE 484 (657)
Q Consensus 453 ~s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~ 484 (657)
.+..+|.+|.+.|+..+.+++.++.+++.|..
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~ 44 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELARLEA 44 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56779999999999999999999888888877
No 30
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=94.78 E-value=2.4 Score=50.26 Aligned_cols=116 Identities=22% Similarity=0.232 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhc------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 461 LKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASG------ALDRVQVETLRKDLHEASQRLEILKEEKAQI 534 (657)
Q Consensus 461 lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~------~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~ 534 (657)
++--+=++.+=||++++.-..+.+.+...+|.+.|+.--+.++ .--+..+-.|..++.+.+.++..|.....++
T Consensus 39 lk~r~L~aeniiqdlrserdalhe~lvdkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn~c~~l 118 (1265)
T KOG0976|consen 39 LKKRLLDAENIIQDLRSERDALHESLVDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRL 118 (1265)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456678899999998888888877776664432111111 0114455556777777777777777778888
Q ss_pred HHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHH
Q 006200 535 ESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKAL 576 (657)
Q Consensus 535 eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~l 576 (657)
|.|...++.+++.+|.+++.....++++..+...+++++.+-
T Consensus 119 E~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk 160 (1265)
T KOG0976|consen 119 EMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAK 160 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 888999999999999988888777777666666666665443
No 31
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.74 E-value=2.1 Score=49.33 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMES 550 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~ 550 (657)
..++.++++-++++.+....++.+..+++.|++.|+....+.+.
T Consensus 91 e~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k 134 (546)
T KOG0977|consen 91 EAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEK 134 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666544
No 32
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.70 E-value=2 Score=52.91 Aligned_cols=36 Identities=28% Similarity=0.298 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhHhHHHHHhhhhhhhHHHHHHHHHH
Q 006200 595 AREEAQKESEAELNDLLVCLGQEQSKVEKLSARLLE 630 (657)
Q Consensus 595 ~~~e~~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~ 630 (657)
..+...+.++++.++|...+-+.+.|....+.++++
T Consensus 946 ~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e 981 (1293)
T KOG0996|consen 946 ELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKE 981 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344556777788888888888887777776666654
No 33
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=94.69 E-value=2.2 Score=51.37 Aligned_cols=88 Identities=16% Similarity=0.197 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 455 KDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQI 534 (657)
Q Consensus 455 ~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~ 534 (657)
+..++-||+.++...+.-..|++++..|..+|..-...- .-...+++.++..+.-.+..++.+++.....
T Consensus 321 r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l----------~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~ 390 (775)
T PF10174_consen 321 RQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQL----------EKKQAQIEKLQEEKSRLQGEIEDLRDMLDKK 390 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777777777777777664333100 0113444555555555555555566666666
Q ss_pred HHHHHHHHHHHHHHHHhH
Q 006200 535 ESDSSMYRNLAAKMESDL 552 (657)
Q Consensus 535 eae~~~~~~~a~~le~~l 552 (657)
+.++..++..+..++..|
T Consensus 391 e~ki~~Lq~kie~Lee~l 408 (775)
T PF10174_consen 391 ERKINVLQKKIENLEEQL 408 (775)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666665555433
No 34
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.57 E-value=0.75 Score=49.29 Aligned_cols=74 Identities=16% Similarity=0.310 Sum_probs=54.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 505 LDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 505 ~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
.++.+|..|..++..+++...++-.|+..+..-+...|..-..|..+|..+.++|.....-.....+|++.+|.
T Consensus 231 rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~ 304 (306)
T PF04849_consen 231 RQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLRK 304 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 44667777777777777777777777777777777777777777777777777777777777777777777764
No 35
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.56 E-value=4.2 Score=43.34 Aligned_cols=91 Identities=19% Similarity=0.175 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcCCCCCCcccHHHHHHHHHHHH-------HHH
Q 006200 530 EKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAEAREEA-------QKE 602 (657)
Q Consensus 530 e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~~~~~~~~~l~~~~~~~~~e~-------~~~ 602 (657)
+...++.|+..++..+..++.++.++......|+.++..++.+...-++ +..... ...+.+ ...
T Consensus 210 ~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~--------~~~~~i-~~le~el~~l~~~~~~ 280 (312)
T PF00038_consen 210 ELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEERE--------EYQAEI-AELEEELAELREEMAR 280 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH-HHHHHHHHHHHHHHHH
T ss_pred ccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHH--------HHHHhh-hccchhHHHHHHHHHH
Confidence 3344555555555555555555555555544555444444333322221 011110 122222 334
Q ss_pred HHHhHhHHHHHhhhhhhhHHHHHHHHH
Q 006200 603 SEAELNDLLVCLGQEQSKVEKLSARLL 629 (657)
Q Consensus 603 ~~~e~~dLl~ll~d~~~K~~~~k~~L~ 629 (657)
...+..+||-+=..+|.-+..||+.|.
T Consensus 281 ~~~ey~~Ll~~K~~Ld~EIatYR~LLE 307 (312)
T PF00038_consen 281 QLREYQELLDVKLALDAEIATYRKLLE 307 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 444557777777788999999998773
No 36
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.53 E-value=2.4 Score=46.51 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=13.7
Q ss_pred HHHhHhHHHHHhhhhhhhHHHHHHHHHH
Q 006200 603 SEAELNDLLVCLGQEQSKVEKLSARLLE 630 (657)
Q Consensus 603 ~~~e~~dLl~ll~d~~~K~~~~k~~L~~ 630 (657)
.+.++.++-.-+.+...++...+..|..
T Consensus 244 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 244 VLEELTEAQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444445555555555555544
No 37
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=94.52 E-value=2.9 Score=42.36 Aligned_cols=100 Identities=18% Similarity=0.296 Sum_probs=63.2
Q ss_pred hccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHH
Q 006200 448 QRNGESDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEIL 527 (657)
Q Consensus 448 ~~~~~~s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l 527 (657)
+++|+|| =||.++++-..++..=-.++.+|..++....+ .......++..|+..+...+..++..
T Consensus 7 qk~GEIs-----LLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~----------~l~~~~~~~~~l~~~~~~K~~ELE~c 71 (202)
T PF06818_consen 7 QKSGEIS-----LLKQQLKESQAEVNQKDSEIVSLRAQLRELRA----------ELRNKESQIQELQDSLRTKQLELEVC 71 (202)
T ss_pred hhhhhHH-----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----------HHHhhHHHHHHHHHHHHHhhHhHHHh
Confidence 4455544 36666666555555444555555555432221 01122455566777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHH
Q 006200 528 KEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSL 562 (657)
Q Consensus 528 ~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~L 562 (657)
+.|+.+...|++-++..+..++.++..|...+...
T Consensus 72 e~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 72 ENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 88888888888888888888888888877766654
No 38
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.49 E-value=1.3 Score=48.39 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 521 SQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 521 ~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
..+..+++.++.+..-+...+.+.+..++++|+.|...|.+|+++...+-.+-++|.
T Consensus 122 ~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 122 RQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455556666777777777888888888888888888877777666666665
No 39
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=0.31 Score=52.91 Aligned_cols=107 Identities=22% Similarity=0.255 Sum_probs=81.8
Q ss_pred HHHHHHHHhhHhccCCCCCCCCCccchhhhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhh
Q 006200 26 NLLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLA 105 (657)
Q Consensus 26 N~~~~L~ivrllV~~g~~~~~~~~~~~~~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa 105 (657)
-...+|+-+..||.+ .-|=.-|.+.|.+..|+. .+ ...+..||..|..++|-+.+.||..|+.+-
T Consensus 99 ~ke~ald~Le~lve~------------iDnAndl~~~ggl~~ll~-~l--~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~ 163 (342)
T KOG2160|consen 99 DKEDALDNLEELVED------------IDNANDLISLGGLVPLLG-YL--ENSDAELRELAARVIGTAVQNNPKSQEQVI 163 (342)
T ss_pred HHHHHHHHHHHHHHh------------hhhHHhHhhccCHHHHHH-Hh--cCCcHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 345666666777663 135566889999988888 55 356999999999999999999999999976
Q ss_pred ccccCCCCccchHHHHHHHHHhccCchhHHhHHHHHHHHhhcCChhhHH-HH
Q 006200 106 SKVLGEEPQVEAALNSILRIILRTSSMQEFLAADRIFNSFCEKNPDGQA-ML 156 (657)
Q Consensus 106 ~~~vp~~p~~~pal~~LL~~~L~~~~~~~r~AA~~cf~ayl~~N~~~q~-~L 156 (657)
... ++-.|+...-...+.+.|..|+|.+-|.+.+|+.|+. |+
T Consensus 164 E~~---------~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl 206 (342)
T KOG2160|consen 164 ELG---------ALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFL 206 (342)
T ss_pred Hcc---------cHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 554 2334444433555668899999999999999999994 44
No 40
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.44 E-value=0.39 Score=50.21 Aligned_cols=74 Identities=26% Similarity=0.334 Sum_probs=60.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------hHHHhHHHHh
Q 006200 506 DRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMES-------------------------DLKSLSDAYN 560 (657)
Q Consensus 506 ~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~-------------------------~l~~ls~~~~ 560 (657)
.+.++.-|..+|..++++++.|+.++.+.++|++..+..+....+ .+..|..+|+
T Consensus 93 Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~ekyn 172 (307)
T PF10481_consen 93 KESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEELQEKYN 172 (307)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhhhhHHHHHHHHH
Confidence 367888899999999999999999999999999998888876553 3444556666
Q ss_pred HHHHHhHhHHHHHHHHHcC
Q 006200 561 SLEQTNFHLEKEVKALKSG 579 (657)
Q Consensus 561 ~Le~~~~~le~e~~~lr~~ 579 (657)
.--.+..+||.|++.++-.
T Consensus 173 keveerkrle~e~k~lq~k 191 (307)
T PF10481_consen 173 KEVEERKRLEAEVKALQAK 191 (307)
T ss_pred HHHHHHhhHHHHHHHHhcc
Confidence 5556788899999999853
No 41
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=94.42 E-value=1.9 Score=56.37 Aligned_cols=72 Identities=21% Similarity=0.327 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
+.++..+..++++.+.....++.++...+.++..++......+..+.++...++.++.++..+++++..+++
T Consensus 907 e~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e 978 (1930)
T KOG0161|consen 907 EKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDE 978 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555566666777777777777777777777777777777777777777777666554
No 42
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.36 E-value=2.6 Score=53.28 Aligned_cols=30 Identities=37% Similarity=0.462 Sum_probs=15.9
Q ss_pred HHHHHHhHhHHHHHhhhhhhhHHHHHHHHH
Q 006200 600 QKESEAELNDLLVCLGQEQSKVEKLSARLL 629 (657)
Q Consensus 600 ~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~ 629 (657)
+.+++++++.+--.+.+...++.+++.++.
T Consensus 886 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 915 (1163)
T COG1196 886 KEELEEELRELESELAELKEEIEKLRERLE 915 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555554443
No 43
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.26 E-value=1.4 Score=41.26 Aligned_cols=36 Identities=31% Similarity=0.441 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhHhHHHHHhhhhhhhHHHHHHHHHHc
Q 006200 596 REEAQKESEAELNDLLVCLGQEQSKVEKLSARLLEL 631 (657)
Q Consensus 596 ~~e~~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~l 631 (657)
-+...++++...+.+|.++|+-.+.+..+|..+.++
T Consensus 73 L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~Dl 108 (120)
T PF12325_consen 73 LEQELEELQQRYQTLLELLGEKSEEVEELRADVQDL 108 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 334578888899999999999999988888876554
No 44
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.11 E-value=8.1 Score=40.83 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 463 AFVEKQCSEIQKLLGRNATLAEEL 486 (657)
Q Consensus 463 ~~i~~Q~~eiq~L~~~~~~L~~~l 486 (657)
+.|..++.+|.+++.....++.++
T Consensus 31 ~~i~~~ds~l~~~~~~~~~~q~ei 54 (265)
T COG3883 31 DKIQNQDSKLSELQKEKKNIQNEI 54 (265)
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHH
Confidence 458889999988888877777654
No 45
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=93.99 E-value=2.3 Score=49.08 Aligned_cols=111 Identities=21% Similarity=0.241 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 459 KRLKAFVEKQCSEIQKLLGRNATLAEELAKIG--GDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIES 536 (657)
Q Consensus 459 ~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~ea 536 (657)
+.||++++.-...++.-+++...|..+|.... ++.+...+. ..+-+.++|+.+|.++...+ +..+.+|..
T Consensus 286 e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh-----~aRLe~aql~~qLad~~l~l---ke~~~q~~q 357 (546)
T PF07888_consen 286 EALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELH-----QARLEAAQLKLQLADASLEL---KEGRSQWAQ 357 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhhHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 45778888877788878888888888774433 222221111 11456777888887776643 444455555
Q ss_pred HHHHHHHHHHHHHHhHHHhH-------HHHhHHHHHhHhHHHHHHHHH
Q 006200 537 DSSMYRNLAAKMESDLKSLS-------DAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 537 e~~~~~~~a~~le~~l~~ls-------~~~~~Le~~~~~le~e~~~lr 577 (657)
|...++..+...+..+.+|+ ..|.+=..++.+|+.++...+
T Consensus 358 Ek~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~ 405 (546)
T PF07888_consen 358 EKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEK 405 (546)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555554444444444444 444444456666777765544
No 46
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.94 E-value=18 Score=43.35 Aligned_cols=145 Identities=13% Similarity=0.154 Sum_probs=79.5
Q ss_pred hhHHHHHhhcHHHHHHHHH--hc-c-----CCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCC-CCcc---------
Q 006200 54 TNKTVLVQKKALDNLLMLA--VE-S-----QWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGE-EPQV--------- 115 (657)
Q Consensus 54 ~nQ~~l~q~glL~~ll~La--~~-s-----~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~-~p~~--------- 115 (657)
+||+-|...|.+.-|..|. |. + .|. +=|+.-++++=++||- .|++ .++.
T Consensus 245 SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~--~Qrv~Nv~~~Lqivr~-----------lVsP~Nt~~~~~q~qk~l 311 (970)
T KOG0946|consen 245 SNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWS--TQRVQNVIEALQIVRS-----------LVSPGNTSSITHQNQKAL 311 (970)
T ss_pred chhhHHhccccHHHHHhhcCcccccCccccccc--HHHHHHHHHHHHHHHH-----------hcCCCCcHHHHHHHHHHH
Confidence 7999999999888777541 10 1 243 3456667777777762 2332 1110
Q ss_pred -ch-HHHHHHHHHhccCc-hhHHhHHHHHHHHhhcCChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCC
Q 006200 116 -EA-ALNSILRIILRTSS-MQEFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGE 192 (657)
Q Consensus 116 -~p-al~~LL~~~L~~~~-~~~r~AA~~cf~ayl~~N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d 192 (657)
.. .+.+|....++..- ...+--+....---+++|...|..+..+..|+..+ |.+...+|+-.++..-
T Consensus 312 ~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~----------Pr~sivvllmsm~ne~ 381 (970)
T KOG0946|consen 312 VSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPN----------PRPSIVVLLMSMFNEK 381 (970)
T ss_pred HHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCC----------CccchhHHHHHHHhcc
Confidence 01 24566666555531 12332333333345679999998888888887543 2344555666554422
Q ss_pred CCcchhHHHHHHH-HHHHHhcCCHHHHHHHhcc
Q 006200 193 SDGDLEVCCRAAS-VLSHILMDNLQCKERVLRI 224 (657)
Q Consensus 193 ~~~dpy~~wfAa~-iL~hll~dn~~~Ke~al~V 224 (657)
-||..-.|+. .|-..+++|...+...+.-
T Consensus 382 ---q~~~lRcAv~ycf~s~l~dN~~gq~~~l~t 411 (970)
T KOG0946|consen 382 ---QPFSLRCAVLYCFRSYLYDNDDGQRKFLKT 411 (970)
T ss_pred ---CCchHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 2333222332 4555667887666555443
No 47
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.90 E-value=2.1 Score=46.44 Aligned_cols=45 Identities=24% Similarity=0.423 Sum_probs=23.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 506 DRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMES 550 (657)
Q Consensus 506 ~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~ 550 (657)
...+++.++++|.+....++..+.++..++.+...++..+.++..
T Consensus 207 D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~ 251 (325)
T PF08317_consen 207 DQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEE 251 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666555555555454555555544444444444443
No 48
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.88 E-value=8.8 Score=40.01 Aligned_cols=21 Identities=5% Similarity=-0.156 Sum_probs=11.9
Q ss_pred HHHhhhhhhhHHHHHHHHHHc
Q 006200 611 LVCLGQEQSKVEKLSARLLEL 631 (657)
Q Consensus 611 l~ll~d~~~K~~~~k~~L~~l 631 (657)
-.|-..++++.-..-.|++..
T Consensus 166 ~~L~~~l~~ell~~yeri~~~ 186 (239)
T COG1579 166 EELKEKLDPELLSEYERIRKN 186 (239)
T ss_pred HHHHHhcCHHHHHHHHHHHhc
Confidence 345556666665555565543
No 49
>PRK02224 chromosome segregation protein; Provisional
Probab=93.86 E-value=3.4 Score=50.43 Aligned_cols=8 Identities=25% Similarity=0.563 Sum_probs=4.4
Q ss_pred HHHHHhcC
Q 006200 90 ISDIIAAH 97 (657)
Q Consensus 90 ~adlIrgn 97 (657)
..++|+.+
T Consensus 57 ~~~~~~~~ 64 (880)
T PRK02224 57 LDDVITIG 64 (880)
T ss_pred HHHHHhCC
Confidence 45666543
No 50
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=93.78 E-value=6.5 Score=46.75 Aligned_cols=174 Identities=25% Similarity=0.244 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCCCcc-hhhhhhccccHHHHHHHHHHHHHHHHHHHH-HHHHH--
Q 006200 457 YVKRLKAFVEKQ-CSEIQKLLGRNATLAEELAKIGGDGASQ-SEQRASGALDRVQVETLRKDLHEASQRLEI-LKEEK-- 531 (657)
Q Consensus 457 ~v~~lk~~i~~Q-~~eiq~L~~~~~~L~~~l~~~~~~~~~~-~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~-l~~e~-- 531 (657)
++..||++|.+| |.|++.|-.++...-.-|.-..|...-+ +-+=+ --..+.++.+||++|.-+.+++.+ -++++
T Consensus 342 LLgELkaLVaeq~DsE~qRLitEvE~cislLPav~g~tniq~EIALA-~QplrsENaqLrRrLrilnqqlreqe~~~k~~ 420 (861)
T PF15254_consen 342 LLGELKALVAEQEDSEVQRLITEVEACISLLPAVSGSTNIQVEIALA-MQPLRSENAQLRRRLRILNQQLREQEKAEKTS 420 (861)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhhccccchhhhHhh-hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 556788888888 8999999888888887776555433111 10000 002245556666666555544321 11111
Q ss_pred --HHHHHHHHHHHHHHHHHHHhHH-------HhH-------HHHhHHHHHhHhHHHH-------HHHHHcCCCCCCcccH
Q 006200 532 --AQIESDSSMYRNLAAKMESDLK-------SLS-------DAYNSLEQTNFHLEKE-------VKALKSGGSSVSSPDV 588 (657)
Q Consensus 532 --~~~eae~~~~~~~a~~le~~l~-------~ls-------~~~~~Le~~~~~le~e-------~~~lr~~~~~~~~~~l 588 (657)
....-|+..++..---+|+.|+ .|. ..++++..+|+++.+. +.+-|+. -|+
T Consensus 421 ~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~------~d~ 494 (861)
T PF15254_consen 421 GSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQ------FDI 494 (861)
T ss_pred CCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH------HHH
Confidence 0011122222222222222222 222 2222223344443322 2222211 123
Q ss_pred HHHHH-HHHHH----------HHHHHHHhHhHHHHHhhhhhhhHHHHHHHHHHcCchhhh
Q 006200 589 EAIKA-EAREE----------AQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVEK 637 (657)
Q Consensus 589 ~~~~~-~~~~e----------~~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~lg~~v~~ 637 (657)
+..|- .+-++ +++++++|--.|-+-|-+-|+-++|++..-|.|--....
T Consensus 495 e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~ 554 (861)
T PF15254_consen 495 ETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAK 554 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32221 11222 257788888889899999999999998766666544433
No 51
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.69 E-value=6.9 Score=37.57 Aligned_cols=65 Identities=23% Similarity=0.290 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHH
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEK 571 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~ 571 (657)
++.++.|+.++....+.+..++.++..+.+|..++-+.-.+++..+..|.....++..-+...+.
T Consensus 51 k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ 115 (140)
T PF10473_consen 51 KAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQ 115 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45666666666666666666555555555555555555555554444444333333333333333
No 52
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.59 E-value=7.8 Score=44.43 Aligned_cols=70 Identities=29% Similarity=0.463 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHhH-------HHHhHHHHHhHhHHHHHH
Q 006200 509 QVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKME-------SDLKSLS-------DAYNSLEQTNFHLEKEVK 574 (657)
Q Consensus 509 q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le-------~~l~~ls-------~~~~~Le~~~~~le~e~~ 574 (657)
++-.|+..|.+..+.++..+.|+.++.....+++..-+..| .+++... ..|++||.+|..|.+.|.
T Consensus 108 kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs 187 (772)
T KOG0999|consen 108 KILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVS 187 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 44555555555555555555555555555444444333222 2222222 468899999999999999
Q ss_pred HHHc
Q 006200 575 ALKS 578 (657)
Q Consensus 575 ~lr~ 578 (657)
.||+
T Consensus 188 ~LR~ 191 (772)
T KOG0999|consen 188 NLRQ 191 (772)
T ss_pred HHhh
Confidence 9985
No 53
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=93.59 E-value=6 Score=50.08 Aligned_cols=14 Identities=21% Similarity=0.161 Sum_probs=7.2
Q ss_pred HHHHHhhcCCChHH
Q 006200 282 NAVHCFLDSRPHLT 295 (657)
Q Consensus 282 ~AV~~FL~~~s~l~ 295 (657)
.||..+|++.-.+.
T Consensus 607 ~~~~~~l~~t~Iv~ 620 (1163)
T COG1196 607 PAVRFVLGDTLVVD 620 (1163)
T ss_pred HHHHHHhCCeEEec
Confidence 55555555554333
No 54
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.56 E-value=3.7 Score=48.16 Aligned_cols=40 Identities=23% Similarity=0.270 Sum_probs=21.7
Q ss_pred HHHHHHHHHhHhHHHHHhhhhhhhHHHHHHHHHHcCchhh
Q 006200 597 EEAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVE 636 (657)
Q Consensus 597 ~e~~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~lg~~v~ 636 (657)
..+.++++.+...+..-+-.-++...+++..++.++.+++
T Consensus 446 ~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~ 485 (594)
T PF05667_consen 446 LQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVN 485 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 3445555555555555555555555555555555555543
No 55
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=93.41 E-value=2.5 Score=55.32 Aligned_cols=30 Identities=27% Similarity=0.212 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 457 YVKRLKAFVEKQCSEIQKLLGRNATLAEEL 486 (657)
Q Consensus 457 ~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l 486 (657)
-+..+++.+++-...+++++.+...+..++
T Consensus 937 e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~ 966 (1930)
T KOG0161|consen 937 EVQELKEQLEELELTLQKLELEKNAAENKL 966 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666665555555544444444
No 56
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.41 E-value=3.4 Score=44.20 Aligned_cols=196 Identities=17% Similarity=0.199 Sum_probs=114.1
Q ss_pred chHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchhHHhHHHHHHHHhhcCChhhHHHHHh
Q 006200 79 PVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAADRIFNSFCEKNPDGQAMLTS 158 (657)
Q Consensus 79 p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~~r~AA~~cf~ayl~~N~~~q~~L~~ 158 (657)
..++.--.|..++||++.++...+.|........+ .| ...+++ ++..++......|++++-..+...+........
T Consensus 70 ~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~--~~-~~~fl~-ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~ 145 (312)
T PF03224_consen 70 NDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDS--DP-YSPFLK-LLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVK 145 (312)
T ss_dssp -HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH-----HHHHHH-H-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccc--hh-HHHHHH-HhcCCCHHHHHHHHHHHHHHHHcCCccccchHH
Confidence 78999999999999999999999999887764322 22 355666 666666666677777777666555443322111
Q ss_pred hhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHhccccccCCCCCCCCcc
Q 006200 159 TLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEP 238 (657)
Q Consensus 159 tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~dn~~~Ke~al~V~l~~~~~~~~~~e~ 238 (657)
.+ ...++.-|.+.-...+.-...+|.-.|.+++ .+++.|.......
T Consensus 146 ~~--------------------l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL-~~~~~R~~f~~~~------------- 191 (312)
T PF03224_consen 146 EA--------------------LPKLLQWLSSQLSSSDSELQYIAVQCLQNLL-RSKEYRQVFWKSN------------- 191 (312)
T ss_dssp HH--------------------HHHHHHHHH-TT-HHHH---HHHHHHHHHHH-TSHHHHHHHHTHH-------------
T ss_pred HH--------------------HHHHHHHHHHhhcCCCcchHHHHHHHHHHHh-CcchhHHHHHhcC-------------
Confidence 11 1112222211111111111244566777777 4567777666521
Q ss_pred hHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHH-hhcChHHHHHhhcCCChHHHHHHHhhCCCCchHhHHHHHHH
Q 006200 239 LMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTW-LADCPNAVHCFLDSRPHLTYLLELVSNPSATVCTRGLAAVL 317 (657)
Q Consensus 239 ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~W-L~e~p~AV~~FL~~~s~l~~L~~~i~~~~~~~lVqGL~A~L 317 (657)
.++.+..++.......+ ..-.|+-|-.++|.| |-=++.++..|...+ -++.|++.+....-+-+||=..|.|
T Consensus 192 ~v~~l~~iL~~~~~~~~------~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~-~i~~L~~i~~~~~KEKvvRv~la~l 264 (312)
T PF03224_consen 192 GVSPLFDILRKQATNSN------SSGIQLQYQALLCLWLLSFEPEIAEELNKKY-LIPLLADILKDSIKEKVVRVSLAIL 264 (312)
T ss_dssp HHHHHHHHHH---------------HHHHHHHHHHHHHHHTTSHHHHHHHHTTS-HHHHHHHHHHH--SHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhcccCC------CCchhHHHHHHHHHHHHhcCHHHHHHHhccc-hHHHHHHHHHhcccchHHHHHHHHH
Confidence 34444444421110011 123788899999999 677888999998888 8999999987776668888766666
Q ss_pred hh
Q 006200 318 LG 319 (657)
Q Consensus 318 LG 319 (657)
.=
T Consensus 265 ~N 266 (312)
T PF03224_consen 265 RN 266 (312)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 57
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.38 E-value=10 Score=38.50 Aligned_cols=34 Identities=32% Similarity=0.273 Sum_probs=18.4
Q ss_pred HHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 544 LAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 544 ~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
....++..+..|.-.+..|++....++.|-.+|.
T Consensus 94 rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 94 RLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555555555555554
No 58
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.27 E-value=0.35 Score=48.50 Aligned_cols=109 Identities=17% Similarity=0.211 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcCCCCCCc
Q 006200 506 DRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSS 585 (657)
Q Consensus 506 ~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~~~~~~~ 585 (657)
....+..++.+|.++.+....+...+..+..++..++......+..+..|...+..|+.++..++.++++.+.....- .
T Consensus 72 le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l-~ 150 (194)
T PF08614_consen 72 LEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEIL-Q 150 (194)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred cccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 345556666667666666655555544444444444444444444444444444444444444444443332100000 0
Q ss_pred ccHHHHHHH--HHHHHHHHHHHhHhHHHHHhh
Q 006200 586 PDVEAIKAE--AREEAQKESEAELNDLLVCLG 615 (657)
Q Consensus 586 ~~l~~~~~~--~~~e~~~~~~~e~~dLl~ll~ 615 (657)
.++.+...+ ..++....+++|-.+|+-=|.
T Consensus 151 DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm 182 (194)
T PF08614_consen 151 DELQALQLQLNMLEEKLRKLEEENRELVERWM 182 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222211 444556666666666665544
No 59
>PRK03918 chromosome segregation protein; Provisional
Probab=93.23 E-value=6.8 Score=47.71 Aligned_cols=23 Identities=17% Similarity=0.314 Sum_probs=14.5
Q ss_pred HHHHHHhhcchhhHHHHHHHHhc
Q 006200 337 IVDSISQKVGLTSYFLKFDEMQK 359 (657)
Q Consensus 337 l~~lI~~RiG~d~y~~kl~~lr~ 359 (657)
...+|..=+|.+.|-.....+++
T Consensus 147 r~~~~~~~~~~~~~~~~~~~~~~ 169 (880)
T PRK03918 147 REKVVRQILGLDDYENAYKNLGE 169 (880)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 34555666788887666665554
No 60
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.05 E-value=1.2 Score=45.25 Aligned_cols=70 Identities=10% Similarity=0.195 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 460 RLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSS 539 (657)
Q Consensus 460 ~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~ 539 (657)
+.+..+.+..++++++++++..+..+.. .....+++++++..+.+..|+.++++++.+.+
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~--------------------~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~ 149 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWN--------------------QRTAEMQQKVAQSDSVINGLKEENQKLKNQLI 149 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777776665321 22234455555555555555555555555555
Q ss_pred HHHHHHHHHH
Q 006200 540 MYRNLAAKME 549 (657)
Q Consensus 540 ~~~~~a~~le 549 (657)
..++....++
T Consensus 150 ~~~~~~~~l~ 159 (206)
T PRK10884 150 VAQKKVDAAN 159 (206)
T ss_pred HHHHHHHHHH
Confidence 5444333333
No 61
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.05 E-value=1.2 Score=50.58 Aligned_cols=105 Identities=25% Similarity=0.283 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 470 SEIQKLLGRNATLAEELAKIGGDGASQSEQRASGAL-DRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKM 548 (657)
Q Consensus 470 ~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~-~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~l 548 (657)
++.+.|+++++-|++++.+...++.... ..+. .-.+-.+|++++++....++..+.|+.+++.....|+....+-
T Consensus 8 q~ve~lr~eierLT~el~q~t~e~~qaA----eyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~ 83 (772)
T KOG0999|consen 8 QEVEKLRQEIERLTEELEQTTEEKIQAA----EYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKV 83 (772)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677777777777766653321100 0011 1223355666665555555544444444443333333222111
Q ss_pred --------HHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 549 --------ESDLKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 549 --------e~~l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
++-|+.-..+-..+-+.+..++.|++.+|.
T Consensus 84 ~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~ 121 (772)
T KOG0999|consen 84 ARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQ 121 (772)
T ss_pred hccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 112222222222234556667777776664
No 62
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.93 E-value=7.2 Score=47.62 Aligned_cols=73 Identities=22% Similarity=0.278 Sum_probs=37.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 505 LDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 505 ~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
.++..+.+|...++.+.++.++-..+..+.+.+...++-...+|+..+.++.....+++.++..++.|+..++
T Consensus 784 ~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~ 856 (1174)
T KOG0933|consen 784 NRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLE 856 (1174)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555566666555555554444444444444444444455555555555555555555555555554444
No 63
>PHA02562 46 endonuclease subunit; Provisional
Probab=92.88 E-value=11 Score=43.41 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006200 458 VKRLKAFVEKQCSEIQKLLGRNATLAEELAKI 489 (657)
Q Consensus 458 v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~ 489 (657)
++.++..+..-..+...++.++..+..++...
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555443
No 64
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=92.84 E-value=6.3 Score=42.44 Aligned_cols=145 Identities=19% Similarity=0.243 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 457 YVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIES 536 (657)
Q Consensus 457 ~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~ea 536 (657)
.++.|+.+++.-..+-..|+.+...|..+-. ..++. .+.=+..--++|.+++.++..|..++++-..
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~-------~~Eek------EqqLv~dcv~QL~~An~qia~LseELa~k~E 227 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKTETD-------TYEEK------EQQLVLDCVKQLSEANQQIASLSEELARKTE 227 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh-------hccHH------HHHHHHHHHHHhhhcchhHHHHHHHHHHHHH
Confidence 4556677777666666666666555554211 00000 0111222346777777777777777777777
Q ss_pred HHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcCCCCCCcccHHHHHHHHHHHHHHHHHHhHhHHHHHhhh
Q 006200 537 DSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAEAREEAQKESEAELNDLLVCLGQ 616 (657)
Q Consensus 537 e~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~~~~~~~~~l~~~~~~~~~e~~~~~~~e~~dLl~ll~d 616 (657)
+...++.-+..+.+.+-.+..+..++-.++..+...+...++- . ..-..+..+++..-.+++-+|.+
T Consensus 228 e~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~---------Q----~~L~aEL~elqdkY~E~~~mL~E 294 (306)
T PF04849_consen 228 ENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKES---------Q----RQLQAELQELQDKYAECMAMLHE 294 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---------H----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777766666666666555555555444443320 0 01223477888888888888888
Q ss_pred hhhhHHHHHHH
Q 006200 617 EQSKVEKLSAR 627 (657)
Q Consensus 617 ~~~K~~~~k~~ 627 (657)
..+-++.+|.|
T Consensus 295 aQEElk~lR~~ 305 (306)
T PF04849_consen 295 AQEELKTLRKR 305 (306)
T ss_pred HHHHHHHhhCC
Confidence 88888888754
No 65
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=92.82 E-value=3.8 Score=41.97 Aligned_cols=75 Identities=20% Similarity=0.298 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcCCC
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGS 581 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~~~ 581 (657)
+...+.++.+|++.++..++|-.++.+++++.+..+....+++.+...|.....-|..+.++|++...+|..+..
T Consensus 134 ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~E 208 (290)
T COG4026 134 KEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVE 208 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccccc
Confidence 455677888888888888888888888888888888888888877777777777777777777777777766543
No 66
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=92.79 E-value=8.1 Score=46.56 Aligned_cols=73 Identities=22% Similarity=0.278 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcC
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSG 579 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~ 579 (657)
-.+..+..+|++.+.+.+..++.++..+...++.++....+++....+..+.|+++++++.-+..|++.++..
T Consensus 444 L~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 444 LRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666666777788888888888888888888888888888899988888888887777754
No 67
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=92.70 E-value=4.9 Score=45.67 Aligned_cols=72 Identities=22% Similarity=0.403 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcC
Q 006200 508 VQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSG 579 (657)
Q Consensus 508 ~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~ 579 (657)
.++-.|-.+|..+++.+..+.-|+..+..-+-.|+..-.+|+.++..+.++|.+.++.....++|++.||..
T Consensus 233 Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs~ 304 (596)
T KOG4360|consen 233 EENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRSC 304 (596)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 344557777777888777788888888888888999999999999999999999999999999999999964
No 68
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.66 E-value=6.2 Score=39.05 Aligned_cols=28 Identities=29% Similarity=0.353 Sum_probs=13.4
Q ss_pred HHHHHhHhHHHHHhhhhhhhHHHHHHHH
Q 006200 601 KESEAELNDLLVCLGQEQSKVEKLSARL 628 (657)
Q Consensus 601 ~~~~~e~~dLl~ll~d~~~K~~~~k~~L 628 (657)
.+.+.+..++...+.++.+++...+.-+
T Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 188 (191)
T PF04156_consen 161 QELRSQLERLQENLQQLEEKIQELQELL 188 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555554433
No 69
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=92.62 E-value=7.9 Score=46.17 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 526 ILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 526 ~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
-|..++.++.+++.+++...-+-...+.++++..+.||.+..-++.-+..+++
T Consensus 320 ylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e 372 (1265)
T KOG0976|consen 320 YLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQE 372 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHH
Confidence 35666777888888877777777777778888888888776666665555553
No 70
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=92.61 E-value=9.8 Score=48.43 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 460 RLKAFVEKQCSEIQKLLGRNATLAEELA 487 (657)
Q Consensus 460 ~lk~~i~~Q~~eiq~L~~~~~~L~~~l~ 487 (657)
.|+..++.-...|+.++.+.+.+++++.
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~ 631 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEKQLK 631 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666553
No 71
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.61 E-value=1.8 Score=44.14 Aligned_cols=62 Identities=16% Similarity=0.335 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
+.++..|++++++++.++..+..+ ..+...+++..+..+...++.|+++|.+|.+|+..++.
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~----------~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~ 153 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNT----------WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQK 153 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555443332222 23445556666666777777788888888877777763
No 72
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=92.49 E-value=9.1 Score=38.30 Aligned_cols=94 Identities=19% Similarity=0.187 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcCCCCCCcc
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSP 586 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~~~~~~~~ 586 (657)
...++..-.+|++.+++.+.|..-+..+...++..+.....|..++.+++..+..+..++...+.+-..-++
T Consensus 59 s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~-------- 130 (182)
T PF15035_consen 59 SPDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEE-------- 130 (182)
T ss_pred cccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 356677888899999988888888888888888877777777777777776666654444433332222111
Q ss_pred cHHHHHHHHHHHHHHHHHHhHhHHHHHhhhhhh
Q 006200 587 DVEAIKAEAREEAQKESEAELNDLLVCLGQEQS 619 (657)
Q Consensus 587 ~l~~~~~~~~~e~~~~~~~e~~dLl~ll~d~~~ 619 (657)
.-..-...|+..||.||.+.-.
T Consensus 131 -----------~~~~y~~~eh~rll~LWr~v~~ 152 (182)
T PF15035_consen 131 -----------NFNQYLSSEHSRLLSLWREVVA 152 (182)
T ss_pred -----------HHHhhhcccccHHHHHHHHHHH
Confidence 0112345677777777776543
No 73
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.32 E-value=10 Score=49.15 Aligned_cols=69 Identities=19% Similarity=0.307 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 509 QVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 509 q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
+++.|..++++....++.++.+...++.+++.+.+....++..+..+..++..++.+...+++.+..+.
T Consensus 356 ~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le 424 (1486)
T PRK04863 356 DLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALE 424 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444445555555555555555554555455555555555555555544333
No 74
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=92.31 E-value=9.7 Score=36.29 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=8.9
Q ss_pred HHHhHHHHhHHHHHhHhHHHH
Q 006200 552 LKSLSDAYNSLEQTNFHLEKE 572 (657)
Q Consensus 552 l~~ls~~~~~Le~~~~~le~e 572 (657)
+.++...+..|++.+..+.+|
T Consensus 57 ~~~~~~~~~~l~~~~~kl~~E 77 (136)
T PF04871_consen 57 LEELASEVKELEAEKEKLKEE 77 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 75
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=92.16 E-value=21 Score=40.14 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 460 RLKAFVEKQCSEIQKLLGRNATLAE 484 (657)
Q Consensus 460 ~lk~~i~~Q~~eiq~L~~~~~~L~~ 484 (657)
-|+.+...--+.|..|.+....|+.
T Consensus 151 ~~~~l~~~~~~~i~~l~~~~~~l~~ 175 (420)
T COG4942 151 YYGALNPARAERIDALKATLKQLAA 175 (420)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555444444
No 76
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=92.11 E-value=12 Score=36.04 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006200 507 RVQVETLRKDLHEASQRLEIL 527 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l 527 (657)
...+..|.++|+..+...+.+
T Consensus 23 e~~v~~LEreLe~~q~~~e~~ 43 (140)
T PF10473_consen 23 EDHVESLERELEMSQENKECL 43 (140)
T ss_pred HHHHHHHHHHHHHHHHhHHHH
Confidence 344555555555555444433
No 77
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=92.00 E-value=15 Score=38.07 Aligned_cols=105 Identities=24% Similarity=0.287 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcCCCCCCcccHHH
Q 006200 511 ETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEA 590 (657)
Q Consensus 511 e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~~~~~~~~~l~~ 590 (657)
..+...|+.+..+.+.++.....++.++....+....++....+++.+-..++.++..|+..++.+.
T Consensus 123 ~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE------------- 189 (237)
T PF00261_consen 123 KVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAE------------- 189 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 3344444444444444444444444444444444444444444444444444444444444444433
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHhhhhhhhHHHHHHHH
Q 006200 591 IKAEAREEAQKESEAELNDLLVCLGQEQSKVEKLSARL 628 (657)
Q Consensus 591 ~~~~~~~e~~~~~~~e~~dLl~ll~d~~~K~~~~k~~L 628 (657)
.+++..+.....++++.++|=.=|.....|....+.-|
T Consensus 190 ~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 190 NRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23444444556666666666665555555555555433
No 78
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.98 E-value=3.2 Score=34.95 Aligned_cols=32 Identities=22% Similarity=0.217 Sum_probs=25.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 454 DKDYVKRLKAFVEKQCSEIQKLLGRNATLAEE 485 (657)
Q Consensus 454 s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~ 485 (657)
|.++.+.|..+|+.--..|+-|+-++..|++.
T Consensus 2 SlEv~ekLE~KiqqAvdTI~LLQmEieELKEk 33 (79)
T COG3074 2 SLEVFEKLEAKVQQAIDTITLLQMEIEELKEK 33 (79)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888888888888888774
No 79
>PRK04863 mukB cell division protein MukB; Provisional
Probab=91.96 E-value=7.9 Score=50.09 Aligned_cols=71 Identities=17% Similarity=0.187 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 508 VQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 508 ~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
.++..+..+++++...++..+.+....+.+...+.+...+++..+..+..++..+.++...++.++..+++
T Consensus 348 ~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq 418 (1486)
T PRK04863 348 EKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQ 418 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555555555555555555555555555554
No 80
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=91.94 E-value=14 Score=37.44 Aligned_cols=29 Identities=24% Similarity=0.256 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 457 YVKRLKAFVEKQCSEIQKLLGRNATLAEE 485 (657)
Q Consensus 457 ~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~ 485 (657)
-|..|+..|.+....|++++.+|..|..-
T Consensus 13 ki~~L~n~l~elq~~l~~l~~ENk~Lk~l 41 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQELRKENKTLKQL 41 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888888888888888773
No 81
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=91.86 E-value=17 Score=37.51 Aligned_cols=12 Identities=33% Similarity=0.468 Sum_probs=5.7
Q ss_pred HHHHHHhHhHHH
Q 006200 600 QKESEAELNDLL 611 (657)
Q Consensus 600 ~~~~~~e~~dLl 611 (657)
.+.++.++|+.|
T Consensus 220 ~~~~~~eld~~l 231 (237)
T PF00261_consen 220 YKKVQEELDQTL 231 (237)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444455554443
No 82
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=91.69 E-value=4.3 Score=38.95 Aligned_cols=31 Identities=42% Similarity=0.476 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006200 458 VKRLKAFVEKQCSEIQKLLGRNATLAEELAK 488 (657)
Q Consensus 458 v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~ 488 (657)
+..+.........+|..|..++..|..++.+
T Consensus 23 ~K~le~~~~~~E~EI~sL~~K~~~lE~eld~ 53 (143)
T PF12718_consen 23 VKQLEQENEQKEQEITSLQKKNQQLEEELDK 53 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666666666665543
No 83
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.40 E-value=15 Score=44.97 Aligned_cols=25 Identities=12% Similarity=0.076 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 460 RLKAFVEKQCSEIQKLLGRNATLAE 484 (657)
Q Consensus 460 ~lk~~i~~Q~~eiq~L~~~~~~L~~ 484 (657)
+.+.+++.+.+++..+..+++.|+.
T Consensus 681 ~~~~~~~~~q~el~~le~eL~~le~ 705 (1174)
T KOG0933|consen 681 QAQKELRAIQKELEALERELKSLEA 705 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777666666666655
No 84
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=91.39 E-value=13 Score=44.78 Aligned_cols=28 Identities=14% Similarity=0.181 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQI 534 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~ 534 (657)
..++.+|+.+|..++.+....++....+
T Consensus 236 ~~~L~~l~~ql~~a~~~~~~a~a~~~~l 263 (754)
T TIGR01005 236 TQQLAELNTELSRARANRAAAEGTADSV 263 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666555444444443333
No 85
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=91.38 E-value=24 Score=38.14 Aligned_cols=38 Identities=26% Similarity=0.228 Sum_probs=28.9
Q ss_pred HHHHHhHhHHHHHhhhhhhhHHHHHHHH-HHcCchhhhh
Q 006200 601 KESEAELNDLLVCLGQEQSKVEKLSARL-LELGEDVEKL 638 (657)
Q Consensus 601 ~~~~~e~~dLl~ll~d~~~K~~~~k~~L-~~lg~~v~~~ 638 (657)
-.++.||+-|.=-|.-+=.|+..-|+.| +.|...|+..
T Consensus 170 n~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~ 208 (310)
T PF09755_consen 170 NTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAP 208 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCC
Confidence 4577888888888888888888888888 4577666643
No 86
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=91.21 E-value=24 Score=41.32 Aligned_cols=26 Identities=12% Similarity=0.111 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006200 465 VEKQCSEIQKLLGRNATLAEELAKIG 490 (657)
Q Consensus 465 i~~Q~~eiq~L~~~~~~L~~~l~~~~ 490 (657)
++.....++.+..++..|-..+.++.
T Consensus 277 l~~~~~~~~~i~~~Id~Lyd~lekE~ 302 (569)
T PRK04778 277 LDEAEEKNEEIQERIDQLYDILEREV 302 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666777777776665554
No 87
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=91.13 E-value=26 Score=39.67 Aligned_cols=124 Identities=17% Similarity=0.175 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCcc------------hh-----hhhhc--cccHHHHHHH
Q 006200 455 KDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGG--DGASQ------------SE-----QRASG--ALDRVQVETL 513 (657)
Q Consensus 455 ~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~--~~~~~------------~~-----~~~~~--~~~~~q~e~L 513 (657)
.+++..||.-=++|...||+|+-.|.-|+.++...|. ++..+ ++ -|+.- -.-.+-+..|
T Consensus 316 NEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnL 395 (527)
T PF15066_consen 316 NEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNL 395 (527)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHH
Confidence 3688899999999999999999999999998865552 11110 00 00000 0113444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhH-------HHHhHHHHHhHhHHHHHHHHHc
Q 006200 514 RKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLS-------DAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 514 ~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls-------~~~~~Le~~~~~le~e~~~lr~ 578 (657)
+..|...++.+.+-+.++.-++-++...+...-.||.+.+.-- ..+-+++..+...++|+..|++
T Consensus 396 qe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~ 467 (527)
T PF15066_consen 396 QEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQ 467 (527)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 6666666666666566666666666666666665554332211 1223345555566677666654
No 88
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=91.04 E-value=8.5 Score=47.60 Aligned_cols=95 Identities=18% Similarity=0.144 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 462 KAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMY 541 (657)
Q Consensus 462 k~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~ 541 (657)
++.|+.-+..|+..++.+.+..++.+...+ -+ .+-..++.+|...+++++..+-+-..+-..++..+...
T Consensus 1583 ~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~--------~~--~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa 1652 (1758)
T KOG0994|consen 1583 QDAIQGADRDIRLAQQLLAKVQEETAAAEK--------LA--TSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSA 1652 (1758)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--------HH--HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344555556665556665555554321111 00 01234566666667666655444344445566666667
Q ss_pred HHHHHHHHHhHHHhHHHHhHHHHHh
Q 006200 542 RNLAAKMESDLKSLSDAYNSLEQTN 566 (657)
Q Consensus 542 ~~~a~~le~~l~~ls~~~~~Le~~~ 566 (657)
+..|...+..++.|.+.|+..++-+
T Consensus 1653 ~~~A~~a~q~~~~lq~~~~~~~~l~ 1677 (1758)
T KOG0994|consen 1653 KEQALSAEQGLEILQKYYELVDRLL 1677 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776666554433
No 89
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=90.97 E-value=30 Score=40.10 Aligned_cols=68 Identities=26% Similarity=0.299 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 510 VETLRKDLHEASQRLEILKEE-------KAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 510 ~e~L~~~L~~~~~~~e~l~~e-------~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
+...+.+|++++..++..+.+ ...++.|++..+.....+..+....+..+.+|+.++.+...++..++
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~ 357 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAK 357 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Confidence 444444444444444433333 34445555555555555555555555555666666666666655544
No 90
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=90.86 E-value=21 Score=42.15 Aligned_cols=107 Identities=21% Similarity=0.223 Sum_probs=66.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC------------cchhhhhhcccc---------------
Q 006200 454 DKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGA------------SQSEQRASGALD--------------- 506 (657)
Q Consensus 454 s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~------------~~~~~~~~~~~~--------------- 506 (657)
.++.|..+.+.+..|+.....++.++..|++++...+++.. -+.++|.-....
T Consensus 521 ~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~E 600 (961)
T KOG4673|consen 521 LQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKE 600 (961)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888889999999999999999999988866653220 012222222222
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhHHHhHHHHh
Q 006200 507 ----------RVQVETLRKDLHEASQRLEILKEEK--------AQIESDSSMYRNLAAKMESDLKSLSDAYN 560 (657)
Q Consensus 507 ----------~~q~e~L~~~L~~~~~~~e~l~~e~--------~~~eae~~~~~~~a~~le~~l~~ls~~~~ 560 (657)
+.++++|++.|+++..+.+.+-.+. +++++=.+.+.+.+..|+..=++|++++.
T Consensus 601 q~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~ 672 (961)
T KOG4673|consen 601 QQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWEREERSLNERLS 672 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Confidence 3455555555555555555544432 66777666666777777765555554444
No 91
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.81 E-value=2.6 Score=47.05 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhHhHHHHHhhhh
Q 006200 595 AREEAQKESEAELNDLLVCLGQE 617 (657)
Q Consensus 595 ~~~e~~~~~~~e~~dLl~ll~d~ 617 (657)
++++.+.+++..+.|||+-|.-+
T Consensus 432 s~d~~I~dLqEQlrDlmf~le~q 454 (493)
T KOG0804|consen 432 SKDEKITDLQEQLRDLMFFLEAQ 454 (493)
T ss_pred HHHHHHHHHHHHHHhHheehhhh
Confidence 56677888999999998877543
No 92
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=90.69 E-value=4.7 Score=34.85 Aligned_cols=32 Identities=22% Similarity=0.217 Sum_probs=24.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 454 DKDYVKRLKAFVEKQCSEIQKLLGRNATLAEE 485 (657)
Q Consensus 454 s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~ 485 (657)
|.++.+.|.+.|..--..|.=|+-++..|+++
T Consensus 2 S~EvleqLE~KIqqAvdtI~LLqmEieELKek 33 (79)
T PRK15422 2 SLEVFEKLEAKVQQAIDTITLLQMEIEELKEK 33 (79)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888887777777777773
No 93
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=90.66 E-value=24 Score=36.95 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=18.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 454 DKDYVKRLKAFVEKQCSEIQKLLGRNATLAEEL 486 (657)
Q Consensus 454 s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l 486 (657)
|+++-.-|.+++..-.....+|+.+|..|+-++
T Consensus 43 SrE~EaelesqL~q~etrnrdl~t~nqrl~~E~ 75 (333)
T KOG1853|consen 43 SREIEAELESQLDQLETRNRDLETRNQRLTTEQ 75 (333)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665555555555555555555555555544
No 94
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.54 E-value=14 Score=47.58 Aligned_cols=13 Identities=31% Similarity=0.501 Sum_probs=7.0
Q ss_pred HHHHHHhHHHHHH
Q 006200 414 VDIIKSLESSIRE 426 (657)
Q Consensus 414 v~f~K~n~~~I~~ 426 (657)
.+|.+++...+.+
T Consensus 694 ~~f~~~L~~~~~~ 706 (1311)
T TIGR00606 694 QEFISDLQSKLRL 706 (1311)
T ss_pred HHHHHHHHHHHhc
Confidence 3566666555543
No 95
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=90.44 E-value=6.2 Score=39.45 Aligned_cols=77 Identities=23% Similarity=0.250 Sum_probs=59.6
Q ss_pred HhHHHHHHHHHHHHhc-ChhhHHHhhccccCCC-CccchHHHHHHHHHhccCchhHHhHHHHHHHHhhcCChhhHHHHHh
Q 006200 81 AVRCAALRCISDIIAA-HPKNRDVLASKVLGEE-PQVEAALNSILRIILRTSSMQEFLAADRIFNSFCEKNPDGQAMLTS 158 (657)
Q Consensus 81 ~Ir~~AL~t~adlIrg-n~~nQ~~fa~~~vp~~-p~~~pal~~LL~~~L~~~~~~~r~AA~~cf~ayl~~N~~~q~~L~~ 158 (657)
.||..||.++..+++. .+..=..+=..-+|.. ....+....|+..+++..++..|+||+..+.+.+++- +.+|.+
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs---k~~L~~ 77 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGS---KPFLAQ 77 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHcc---HHHHHH
Confidence 4899999999999998 6666555666667764 1124455688888999999999999999999999984 667665
Q ss_pred hh
Q 006200 159 TL 160 (657)
Q Consensus 159 tl 160 (657)
.=
T Consensus 78 Ae 79 (182)
T PF13251_consen 78 AE 79 (182)
T ss_pred HH
Confidence 44
No 96
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=90.08 E-value=2.8 Score=44.14 Aligned_cols=69 Identities=16% Similarity=0.213 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 510 VETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 510 ~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
...|++...-+....+.++..+.++..++..-...++-+|..|.+....++.|++++.++..|+...+.
T Consensus 62 ~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~ 130 (307)
T PF10481_consen 62 YSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQ 130 (307)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444333444444444444444444444445555556666667777788888888888877665
No 97
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=90.03 E-value=17 Score=45.47 Aligned_cols=20 Identities=10% Similarity=0.406 Sum_probs=15.9
Q ss_pred hhcchhhHHHHHHHHhcccccccC
Q 006200 343 QKVGLTSYFLKFDEMQKSFLFSSA 366 (657)
Q Consensus 343 ~RiG~d~y~~kl~~lr~~~~f~~~ 366 (657)
.|+|+.- +..|+.||.|...
T Consensus 325 ~RLgrng----iedik~HpFF~g~ 344 (1317)
T KOG0612|consen 325 VRLGRNG----IEDIKNHPFFEGI 344 (1317)
T ss_pred hhccccc----HHHHHhCccccCC
Confidence 5888754 6789999999953
No 98
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=89.95 E-value=12 Score=40.66 Aligned_cols=52 Identities=19% Similarity=0.314 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 526 ILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 526 ~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
.++.++...+.+++..++...+++..+..+...++.++.+...+.+++++++
T Consensus 213 ~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 213 ALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555555555555555555444444444443
No 99
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=89.89 E-value=14 Score=43.58 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=13.1
Q ss_pred HHHhhcCC-hhhH---HHHHhhhc
Q 006200 142 FNSFCEKN-PDGQ---AMLTSTLI 161 (657)
Q Consensus 142 f~ayl~~N-~~~q---~~L~~tl~ 161 (657)
++.|||.| .++| .||+..|.
T Consensus 86 yq~fLYp~e~~~R~ll~fLiekLP 109 (594)
T PF05667_consen 86 YQTFLYPNEKDLRRLLMFLIEKLP 109 (594)
T ss_pred chhhccCChHHHHHHHHHHHHHCC
Confidence 46788888 4555 47776663
No 100
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=89.81 E-value=16 Score=41.50 Aligned_cols=67 Identities=13% Similarity=0.109 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHH
Q 006200 457 YVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLE 525 (657)
Q Consensus 457 ~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e 525 (657)
-+..++..+..-..++..++.++..+..++.......... ..+.....+.++.+++.++.++...+.
T Consensus 205 ~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~--~~~~~~~l~~~l~~l~~~l~~l~~~y~ 271 (498)
T TIGR03007 205 EISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAG--SSVANSELDGRIEALEKQLDALRLRYT 271 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcc--cccCCCchHHHHHHHHHHHHHHHHHhc
Confidence 3455666666666667777777777776654322111100 011112335667777777777665443
No 101
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=89.75 E-value=36 Score=38.29 Aligned_cols=9 Identities=33% Similarity=0.457 Sum_probs=3.7
Q ss_pred HHHHHcCch
Q 006200 626 ARLLELGED 634 (657)
Q Consensus 626 ~~L~~lg~~ 634 (657)
.++++|+..
T Consensus 224 ~~l~eL~~~ 232 (420)
T COG4942 224 KKLEELRAN 232 (420)
T ss_pred HHHHHHHhH
Confidence 344444433
No 102
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=89.74 E-value=14 Score=36.47 Aligned_cols=25 Identities=24% Similarity=0.318 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 462 KAFVEKQCSEIQKLLGRNATLAEEL 486 (657)
Q Consensus 462 k~~i~~Q~~eiq~L~~~~~~L~~~l 486 (657)
+..+....+++.+++.++..+..++
T Consensus 87 ~~~l~~l~~el~~l~~~~~~~~~~l 111 (191)
T PF04156_consen 87 QQQLQQLQEELDQLQERIQELESEL 111 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555544
No 103
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=89.65 E-value=20 Score=41.59 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 460 RLKAFVEKQCSEIQKLLGRNATLAEEL 486 (657)
Q Consensus 460 ~lk~~i~~Q~~eiq~L~~~~~~L~~~l 486 (657)
+.|..|.+..++..+++.++..|..++
T Consensus 96 ~ar~~l~e~~~~ra~~e~ei~kl~~e~ 122 (546)
T KOG0977|consen 96 TARKLLDETARERAKLEIEITKLREEL 122 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 456666666666666666665555543
No 104
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=89.63 E-value=37 Score=40.25 Aligned_cols=33 Identities=27% Similarity=0.268 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006200 457 YVKRLKAFVEKQCSEIQKLLGRNATLAEELAKI 489 (657)
Q Consensus 457 ~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~ 489 (657)
-|..|+...+.--..+++|...+..|+.++...
T Consensus 37 ev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~ 69 (617)
T PF15070_consen 37 EVRTLKEEKEHDISRVQELERSLSELKNQMAEP 69 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 344566666666666777777777776665433
No 105
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.57 E-value=3.2 Score=45.28 Aligned_cols=92 Identities=17% Similarity=0.197 Sum_probs=66.0
Q ss_pred chhhhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhcc-
Q 006200 51 HKLTNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRT- 129 (657)
Q Consensus 51 ~~~~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~- 129 (657)
|.+..|..+...|.+..|+...=. ..|..+|+.||.+++-+||.|++.|..|-.+.= ..+|-.. +..
T Consensus 154 NNP~~Qe~v~E~~~L~~Ll~~ls~--~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G---------~~~L~~v-l~~~ 221 (342)
T KOG2160|consen 154 NNPKSQEQVIELGALSKLLKILSS--DDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG---------YQVLRDV-LQSN 221 (342)
T ss_pred cCHHHHHHHHHcccHHHHHHHHcc--CCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC---------HHHHHHH-HHcC
Confidence 334789999999999999987663 469999999999999999999999999987621 2333333 334
Q ss_pred -CchhHHhHHHHHHHHhhcCChhhHH
Q 006200 130 -SSMQEFLAADRIFNSFCEKNPDGQA 154 (657)
Q Consensus 130 -~~~~~r~AA~~cf~ayl~~N~~~q~ 154 (657)
.++....=|...+..++..+..-+.
T Consensus 222 ~~~~~lkrK~~~Ll~~Ll~~~~s~~d 247 (342)
T KOG2160|consen 222 NTSVKLKRKALFLLSLLLQEDKSDED 247 (342)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhhh
Confidence 3445555566666666655544443
No 106
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=89.50 E-value=26 Score=40.93 Aligned_cols=31 Identities=10% Similarity=0.023 Sum_probs=15.2
Q ss_pred HHHHHhHhHHHHHhhhhhhhHHHHHHHHHHc
Q 006200 601 KESEAELNDLLVCLGQEQSKVEKLSARLLEL 631 (657)
Q Consensus 601 ~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~l 631 (657)
..++++-.+.---+.....++...++.++..
T Consensus 407 ~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~ 437 (569)
T PRK04778 407 QGLRKDELEAREKLERYRNKLHEIKRYLEKS 437 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444444444445555555566555554
No 107
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=89.42 E-value=15 Score=35.14 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=10.8
Q ss_pred HHHHhHhHHHHHHHHHcC
Q 006200 562 LEQTNFHLEKEVKALKSG 579 (657)
Q Consensus 562 Le~~~~~le~e~~~lr~~ 579 (657)
.+.++.+.+.|+..|++.
T Consensus 131 ~~~e~rkke~E~~kLk~r 148 (151)
T PF11559_consen 131 YEHELRKKEREIEKLKER 148 (151)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345666666666666643
No 108
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=89.33 E-value=27 Score=35.45 Aligned_cols=22 Identities=14% Similarity=0.125 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006200 461 LKAFVEKQCSEIQKLLGRNATL 482 (657)
Q Consensus 461 lk~~i~~Q~~eiq~L~~~~~~L 482 (657)
|+..|++-...|.+++..++..
T Consensus 28 l~q~ird~e~~l~~a~~~~a~~ 49 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKARQALARV 49 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555444433
No 109
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=89.21 E-value=32 Score=36.18 Aligned_cols=57 Identities=23% Similarity=0.295 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhHhHHHHHhh---------------hhhhhHHHHHHHHHHcCchhhhhhccCCCCCCCCCCCc
Q 006200 596 REEAQKESEAELNDLLVCLG---------------QEQSKVEKLSARLLELGEDVEKLLEGIGDDMGLPEDDE 653 (657)
Q Consensus 596 ~~e~~~~~~~e~~dLl~ll~---------------d~~~K~~~~k~~L~~lg~~v~~~~~~~~~~~~~~~~~~ 653 (657)
-.++++..+.+++|.|.=|. .+.+++.++ .+|+.--.-|+..-.|..+..+.-|+|.
T Consensus 251 ~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~I-q~l~k~~~q~sqav~d~~~~~~a~~~~~ 322 (330)
T KOG2991|consen 251 QSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEI-QRLKKGLEQVSQAVGDKKDEVDAIDEDA 322 (330)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccccccccccCCcc
Confidence 44667888888888887665 233333222 2444444455655555555554444443
No 110
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.19 E-value=24 Score=45.42 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=21.6
Q ss_pred HHHHHHHhHhHHHHHhhhhhhhHHHHHHHHHHc
Q 006200 599 AQKESEAELNDLLVCLGQEQSKVEKLSARLLEL 631 (657)
Q Consensus 599 ~~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~l 631 (657)
.+..++.+..++..-.+.++.+...|...+.+.
T Consensus 334 el~~l~~~~~~l~~e~gkl~~~~~~~~~~~~~~ 366 (1311)
T TIGR00606 334 ERRLLNQEKTELLVEQGRLQLQADRHQEHIRAR 366 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777777777777776666655443
No 111
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=89.14 E-value=30 Score=45.37 Aligned_cols=123 Identities=22% Similarity=0.270 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------CCCCc--chhhhhhc-cccHHHHHHHHHHHHHHHHHHHHH
Q 006200 457 YVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIG------GDGAS--QSEQRASG-ALDRVQVETLRKDLHEASQRLEIL 527 (657)
Q Consensus 457 ~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~------~~~~~--~~~~~~~~-~~~~~q~e~L~~~L~~~~~~~e~l 527 (657)
..+++...+..+...|+.|..++..|..++.... +.+.+ ....++.. .....++..|+.+|..+...+.++
T Consensus 852 ~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~y 931 (1822)
T KOG4674|consen 852 ELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREY 931 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666677777777777777777764332 11100 00011100 001223333455554444444444
Q ss_pred HHHH----HHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcC
Q 006200 528 KEEK----AQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSG 579 (657)
Q Consensus 528 ~~e~----~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~ 579 (657)
+++. ..++.....+-+.-.+.++++..+...+.+||.++..|++++..++..
T Consensus 932 qe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e 987 (1822)
T KOG4674|consen 932 QEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREE 987 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 222333333333334555566666677777777777777777777743
No 112
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=89.13 E-value=14 Score=40.05 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006200 455 KDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIG 490 (657)
Q Consensus 455 ~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~ 490 (657)
.+-....++-|++...+.++|+.++..|..+|.+.+
T Consensus 84 ~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~ 119 (401)
T PF06785_consen 84 DEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVR 119 (401)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 445667889999999999999999999999996655
No 113
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=89.10 E-value=25 Score=38.22 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhHhHHHH
Q 006200 595 AREEAQKESEAELNDLLV 612 (657)
Q Consensus 595 ~~~e~~~~~~~e~~dLl~ 612 (657)
.|+..+-++++..+|||.
T Consensus 198 kRQ~yI~~LEsKVqDLm~ 215 (401)
T PF06785_consen 198 KRQAYIGKLESKVQDLMY 215 (401)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455556667777777664
No 114
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=89.04 E-value=3.8 Score=34.98 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 460 RLKAFVEKQCSEIQKLLGRNATLAE 484 (657)
Q Consensus 460 ~lk~~i~~Q~~eiq~L~~~~~~L~~ 484 (657)
++...|+++|..|+.|..+-..|..
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk 26 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSK 26 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3567899999999999988777766
No 115
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=88.97 E-value=24 Score=46.24 Aligned_cols=100 Identities=19% Similarity=0.185 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 465 VEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNL 544 (657)
Q Consensus 465 i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~ 544 (657)
|-++..++.-|+.-|..|.+++...-. + -...+.+++.|+..+.-.+..+.+++.+.....+++..|+.-
T Consensus 1217 i~~~v~~vNll~EsN~~LRee~~~~~~--------k--~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e 1286 (1822)
T KOG4674|consen 1217 ILEKVEEVNLLRESNKVLREENEANLE--------K--IQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEE 1286 (1822)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH--------H--HHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666665432210 0 012234444444444444444555555555555555555555
Q ss_pred HHHHHHhHHHhHHH--------HhHHHHHhHhHHHHHH
Q 006200 545 AAKMESDLKSLSDA--------YNSLEQTNFHLEKEVK 574 (657)
Q Consensus 545 a~~le~~l~~ls~~--------~~~Le~~~~~le~e~~ 574 (657)
..+|..+...|-.+ |+.|..++.+|++|+.
T Consensus 1287 ~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~ 1324 (1822)
T KOG4674|consen 1287 NDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELE 1324 (1822)
T ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 55555444444333 3334445555555544
No 116
>PRK11281 hypothetical protein; Provisional
Probab=88.96 E-value=29 Score=43.82 Aligned_cols=72 Identities=10% Similarity=0.052 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHhH--------HHHhHHHHHhHhHHH
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEK-------AQIESDSSMYRNLAAKMESDLKSLS--------DAYNSLEQTNFHLEK 571 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~-------~~~eae~~~~~~~a~~le~~l~~ls--------~~~~~Le~~~~~le~ 571 (657)
+..+.++.++|++.++.+..++.+. .+.++.+...+...++.++.+++.. .+...|++|...++.
T Consensus 127 Eq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~ 206 (1113)
T PRK11281 127 ESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNA 206 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 3444455555555555555554444 3333344444444444444443321 223334555555555
Q ss_pred HHHHHHc
Q 006200 572 EVKALKS 578 (657)
Q Consensus 572 e~~~lr~ 578 (657)
++...|.
T Consensus 207 ~~~~~~~ 213 (1113)
T PRK11281 207 QNDLQRK 213 (1113)
T ss_pred HHHHHHH
Confidence 5555444
No 117
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.91 E-value=10 Score=43.46 Aligned_cols=28 Identities=25% Similarity=0.151 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 457 YVKRLKAFVEKQCSEIQKLLGRNATLAE 484 (657)
Q Consensus 457 ~v~~lk~~i~~Q~~eiq~L~~~~~~L~~ 484 (657)
.+..|+.++++|-++|++++++...+.+
T Consensus 589 H~~~l~~~k~~QlQ~l~~~~eer~~i~e 616 (741)
T KOG4460|consen 589 HVKLLCDQKKKQLQDLSYCREERKSLRE 616 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777776666555
No 118
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=88.88 E-value=6.9 Score=45.47 Aligned_cols=88 Identities=16% Similarity=0.276 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 459 KRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDS 538 (657)
Q Consensus 459 ~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~ 538 (657)
.+++..+.+..+.++.|+.+|..|+..+.+. +++++.|+++|++...+.. ...+...|+
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~-----------------k~eie~L~~~l~~~~r~~~----~~~~~~rei 476 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEEL-----------------KREIEKLESELERFRREVR----DKVRKDREI 476 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHH----HHHhhhHHH
Confidence 3466667777777777777777777755332 3456666666666655432 112223333
Q ss_pred HHHHHHHHHHHHhHHHhHHHHhHHHHHhH
Q 006200 539 SMYRNLAAKMESDLKSLSDAYNSLEQTNF 567 (657)
Q Consensus 539 ~~~~~~a~~le~~l~~ls~~~~~Le~~~~ 567 (657)
......+..|+..|+.-.+..++|+.++.
T Consensus 477 ~~~~~~I~~L~~~L~e~~~~ve~L~~~l~ 505 (652)
T COG2433 477 RARDRRIERLEKELEEKKKRVEELERKLA 505 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444443333
No 119
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=88.84 E-value=21 Score=33.60 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDS 538 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~ 538 (657)
-..+..++.++...+..+..++.+....+..+
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l 89 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAEL 89 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666665555555554444444333
No 120
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=88.83 E-value=37 Score=36.47 Aligned_cols=113 Identities=18% Similarity=0.267 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcC---CCCCC
Q 006200 508 VQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSG---GSSVS 584 (657)
Q Consensus 508 ~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~---~~~~~ 584 (657)
..+..|+.+|+..++..+. ..+...+.+++..++..+..+...+..|+....+.-.+...+-++..++|.. .|
T Consensus 138 q~I~~L~k~le~~~k~~e~-~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~h--- 213 (294)
T COG1340 138 QKIKELRKELEDAKKALEE-NEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELH--- 213 (294)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 4566677777777766654 6667777888888888888888877777765544444433333444444421 11
Q ss_pred cccH-HHH-HHHHHHHHHHHHHHhHhHHHHHhhhhhhhHHHHH
Q 006200 585 SPDV-EAI-KAEAREEAQKESEAELNDLLVCLGQEQSKVEKLS 625 (657)
Q Consensus 585 ~~~l-~~~-~~~~~~e~~~~~~~e~~dLl~ll~d~~~K~~~~k 625 (657)
.++ +.. ++..--+++.+++.++.|+...+..+..+....+
T Consensus 214 -e~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~~~ 255 (294)
T COG1340 214 -EEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAK 255 (294)
T ss_pred -HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 111 2235556788899999998888876655544443
No 121
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=88.72 E-value=29 Score=41.25 Aligned_cols=81 Identities=20% Similarity=0.198 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 468 QCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAK 547 (657)
Q Consensus 468 Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~ 547 (657)
...++.++..++..++.++..... ....+....++..+...++++++.+..++.++..++.+++.++..+.+
T Consensus 389 ~~~~~~~~~~~~~~~e~el~~l~~--------~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~ 460 (650)
T TIGR03185 389 LQDAKSQLLKELRELEEELAEVDK--------KISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEA 460 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555533321 001112234666677777777766666666666666666666666655
Q ss_pred HHHhHHHhH
Q 006200 548 MESDLKSLS 556 (657)
Q Consensus 548 le~~l~~ls 556 (657)
++..+.++.
T Consensus 461 ~~~~~~~~~ 469 (650)
T TIGR03185 461 LRKTLDEKT 469 (650)
T ss_pred HHHHHHHHH
Confidence 555554433
No 122
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=88.70 E-value=23 Score=33.97 Aligned_cols=10 Identities=30% Similarity=0.292 Sum_probs=3.9
Q ss_pred hhhhHHHHHH
Q 006200 617 EQSKVEKLSA 626 (657)
Q Consensus 617 ~~~K~~~~k~ 626 (657)
++.|...+..
T Consensus 127 ~E~k~eel~~ 136 (143)
T PF12718_consen 127 WEEKYEELEE 136 (143)
T ss_pred HHHHHHHHHH
Confidence 3444433333
No 123
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=88.70 E-value=14 Score=35.27 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 532 AQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 532 ~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
.+++.+++..+..+...+.+...+..++..++..+....+|+..++
T Consensus 76 ~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk 121 (151)
T PF11559_consen 76 ERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLK 121 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333344444444444444444444333
No 124
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=88.33 E-value=6 Score=38.65 Aligned_cols=69 Identities=22% Similarity=0.358 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcCCC
Q 006200 508 VQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGS 581 (657)
Q Consensus 508 ~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~~~ 581 (657)
.++..+..++.+++.++..++.+...+++|+..+.+.-.. ..|...+++|+.++..+++.+..++++..
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~-----~el~~~i~~l~~e~~~l~~kL~~l~~~~~ 140 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTN-----EELREEIEELEEEIEELEEKLEKLRSGSK 140 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3344444444444444444444444444444443322211 22456677788888888888888887544
No 125
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=88.28 E-value=23 Score=33.35 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=10.5
Q ss_pred HHHHHHhHhHHHHHhhhhhhhHHH
Q 006200 600 QKESEAELNDLLVCLGQEQSKVEK 623 (657)
Q Consensus 600 ~~~~~~e~~dLl~ll~d~~~K~~~ 623 (657)
++.++++++++---..|+...++-
T Consensus 100 k~~le~e~~~~~~r~~dL~~QN~l 123 (132)
T PF07926_consen 100 KEQLEKELSELEQRIEDLNEQNKL 123 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 126
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=88.19 E-value=10 Score=41.11 Aligned_cols=67 Identities=22% Similarity=0.335 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 511 ETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 511 e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
+.|+++-++..++++.++.+...++.+-..+-...+.++.++....+...+++.+......++..||
T Consensus 67 ~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 67 EELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555555555555566666666666666777777777777777777787777
No 127
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=88.16 E-value=14 Score=36.48 Aligned_cols=53 Identities=19% Similarity=0.328 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHh--HHHHHhHhHHHHHHHHHc
Q 006200 526 ILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYN--SLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 526 ~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~--~Le~~~~~le~e~~~lr~ 578 (657)
.|+.+++++++.+..++++++-++++++.|+.++. ++..++..|.+|++.-++
T Consensus 83 ~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~e 137 (201)
T KOG4603|consen 83 VLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRE 137 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777788888888888888876543 344555566666655543
No 128
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=88.03 E-value=17 Score=38.68 Aligned_cols=27 Identities=15% Similarity=0.367 Sum_probs=16.0
Q ss_pred hHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 551 DLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 551 ~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
.+......|..|-.-...|+.|+++.|
T Consensus 277 ~~~~~~~ey~~Ll~~K~~Ld~EIatYR 303 (312)
T PF00038_consen 277 EMARQLREYQELLDVKLALDAEIATYR 303 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333333455666666666777777766
No 129
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=87.81 E-value=24 Score=36.68 Aligned_cols=62 Identities=21% Similarity=0.170 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 516 DLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 516 ~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
-|++..+..+.|..|+..+..++....+-++.||.-++++...-+.....+.++.+|...|+
T Consensus 33 ~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk 94 (230)
T PF10146_consen 33 CLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLK 94 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555554444444444444444443333
No 130
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=87.73 E-value=41 Score=43.53 Aligned_cols=23 Identities=4% Similarity=0.123 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 006200 532 AQIESDSSMYRNLAAKMESDLKS 554 (657)
Q Consensus 532 ~~~eae~~~~~~~a~~le~~l~~ 554 (657)
..+...+..|+.....|+....+
T Consensus 847 ~~~~~aL~~y~~~l~~l~~~~~~ 869 (1353)
T TIGR02680 847 EAVGLALKRFGDHLHTLEVAVRE 869 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666665544433
No 131
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.71 E-value=56 Score=39.98 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=16.5
Q ss_pred HHHhHHHHHhHhHHHHHHHHHc
Q 006200 557 DAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 557 ~~~~~Le~~~~~le~e~~~lr~ 578 (657)
....+||++|.||..-+-.+|.
T Consensus 368 ~qfkqlEqqN~rLKdalVrLRD 389 (1243)
T KOG0971|consen 368 YQFKQLEQQNARLKDALVRLRD 389 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4566788888888887777774
No 132
>PRK10698 phage shock protein PspA; Provisional
Probab=87.42 E-value=38 Score=34.90 Aligned_cols=22 Identities=5% Similarity=0.202 Sum_probs=10.6
Q ss_pred HHHHHhhhhhhhHHHHHHHHHH
Q 006200 609 DLLVCLGQEQSKVEKLSARLLE 630 (657)
Q Consensus 609 dLl~ll~d~~~K~~~~k~~L~~ 630 (657)
+-+--|...++|+.+..++-..
T Consensus 163 ~a~~~f~rmE~ki~~~Ea~aea 184 (222)
T PRK10698 163 EAMARFESFERRIDQMEAEAES 184 (222)
T ss_pred hHHHHHHHHHHHHHHHHHHHhH
Confidence 3444444555555555544433
No 133
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=87.30 E-value=38 Score=40.16 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006200 458 VKRLKAFVEKQCSEIQKLLGRNATLAEELAKIG 490 (657)
Q Consensus 458 v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~ 490 (657)
+..+.+.+....++......++..|..+|....
T Consensus 31 ~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk 63 (617)
T PF15070_consen 31 MQQMSEEVRTLKEEKEHDISRVQELERSLSELK 63 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555566666666667777665544
No 134
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=87.06 E-value=5.1 Score=35.03 Aligned_cols=87 Identities=17% Similarity=0.170 Sum_probs=64.7
Q ss_pred HHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchhHHhH
Q 006200 58 VLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLA 137 (657)
Q Consensus 58 ~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~~r~A 137 (657)
.+.+.|++..|+.+... . -.++|..|+.+++.+..+++.....|.+..+ .|.+..+ ++.++...+.+
T Consensus 2 ~~~~~~~i~~l~~~l~~-~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~------i~~l~~~----l~~~~~~v~~~ 68 (120)
T cd00020 2 AVIQAGGLPALVSLLSS-S--DENVQREAAWALSNLSAGNNDNIQAVVEAGG------LPALVQL----LKSEDEEVVKA 68 (120)
T ss_pred hHHHcCChHHHHHHHHc-C--CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCC------hHHHHHH----HhCCCHHHHHH
Confidence 35788999999998873 3 3789999999999999998888887765322 3333333 23456778889
Q ss_pred HHHHHHHhhcCChhhHHHHH
Q 006200 138 ADRIFNSFCEKNPDGQAMLT 157 (657)
Q Consensus 138 A~~cf~ayl~~N~~~q~~L~ 157 (657)
|++++..+..+++..+..+.
T Consensus 69 a~~~L~~l~~~~~~~~~~~~ 88 (120)
T cd00020 69 ALWALRNLAAGPEDNKLIVL 88 (120)
T ss_pred HHHHHHHHccCcHHHHHHHH
Confidence 99999999998876665444
No 135
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=87.03 E-value=52 Score=39.41 Aligned_cols=37 Identities=22% Similarity=0.168 Sum_probs=27.0
Q ss_pred HHHHHHhHhHHHHHhhhhhhhHHHHHHHHHHcCchhh
Q 006200 600 QKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVE 636 (657)
Q Consensus 600 ~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~lg~~v~ 636 (657)
..+.+.+++++---.-..++..++++.+|...|-.-+
T Consensus 589 ~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 589 YAELELELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4556677777777777778888888888877765443
No 136
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=86.98 E-value=21 Score=38.78 Aligned_cols=48 Identities=13% Similarity=0.220 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 530 EKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 530 e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
+++....++...++...+++..+..+...++....+...+.+++.+++
T Consensus 212 ~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae 259 (312)
T smart00787 212 KLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAE 259 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444444444433
No 137
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=86.93 E-value=59 Score=39.63 Aligned_cols=85 Identities=20% Similarity=0.232 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 467 KQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAA 546 (657)
Q Consensus 467 ~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~ 546 (657)
+...-|+.+++++..+..++.+.++.. -..+.+.++|+.++.+......+++.-... ++...+.+.
T Consensus 355 ear~~~~q~~~ql~~le~~~~e~q~~~----------qe~~~e~eqLr~elaql~a~r~q~eka~~~----~ee~e~~~l 420 (980)
T KOG0980|consen 355 EARRRIEQYENQLLALEGELQEQQREA----------QENREEQEQLRNELAQLLASRTQLEKAQVL----VEEAENKAL 420 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHH
Confidence 444455555666666666554433210 011333345555544433333322211111 233444455
Q ss_pred HHHHhHHHhHHHHhHHHHH
Q 006200 547 KMESDLKSLSDAYNSLEQT 565 (657)
Q Consensus 547 ~le~~l~~ls~~~~~Le~~ 565 (657)
.+++..+++..+|..|.++
T Consensus 421 ~~e~ry~klkek~t~l~~~ 439 (980)
T KOG0980|consen 421 AAENRYEKLKEKYTELRQE 439 (980)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555433
No 138
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=86.79 E-value=15 Score=46.91 Aligned_cols=60 Identities=18% Similarity=0.303 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHH
Q 006200 511 ETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLE 570 (657)
Q Consensus 511 e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le 570 (657)
++|+++++.+...+..+..+...++..+......+..+...+..+...+...+....++.
T Consensus 603 e~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 662 (1201)
T PF12128_consen 603 EELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLK 662 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 355555555555555444444445555544444444444444444444444443333333
No 139
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=86.74 E-value=46 Score=35.24 Aligned_cols=36 Identities=14% Similarity=0.283 Sum_probs=21.8
Q ss_pred hcCCCCCccccchhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 006200 431 VYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLL 476 (657)
Q Consensus 431 ~~~dP~~e~~~~~~~~~~~~~~~s~~~v~~lk~~i~~Q~~eiq~L~ 476 (657)
+...|+.+-+.. ....--++||.+|..+-+++...+
T Consensus 31 ll~~~~~~~~~~----------d~~~~~~q~~~~i~~k~~e~r~~r 66 (338)
T KOG3647|consen 31 LLTSPGQNEADN----------DEEDQRDQYRSLIGDKIEELRKAR 66 (338)
T ss_pred HHhCcCcCCCCC----------CcchHHHHHHHHHHHHHHHHHHHH
Confidence 356677754422 122345789999888877765443
No 140
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=86.62 E-value=20 Score=38.92 Aligned_cols=101 Identities=21% Similarity=0.273 Sum_probs=63.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-Ccchhhhhh-ccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 454 DKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDG-ASQSEQRAS-GALDRVQVETLRKDLHEASQRLEILKEEK 531 (657)
Q Consensus 454 s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~-~~~~~~~~~-~~~~~~q~e~L~~~L~~~~~~~e~l~~e~ 531 (657)
+++-..+|+..+..-.+.+.+++.++..|.+.+.+..... ...+..-+. ....-.|++.++.+.+++...+..+-+|+
T Consensus 77 sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEk 156 (319)
T PF09789_consen 77 SREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEK 156 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566667777777777777777777777776544211 111000000 01223456666666666666666677888
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 006200 532 AQIESDSSMYRNLAAKMESDLKS 554 (657)
Q Consensus 532 ~~~eae~~~~~~~a~~le~~l~~ 554 (657)
..+..|-..|+..+.++..+|..
T Consensus 157 eEl~~ERD~yk~K~~RLN~ELn~ 179 (319)
T PF09789_consen 157 EELVTERDAYKCKAHRLNHELNY 179 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999876654
No 141
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=86.44 E-value=58 Score=38.25 Aligned_cols=72 Identities=18% Similarity=0.308 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKME-SDLKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le-~~l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
..++.-+-.+|+-+++++..++.|...++.+..........-+ .++.++...+++.+.++.+|..+++.++.
T Consensus 234 ~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~ 306 (629)
T KOG0963|consen 234 AAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEA 306 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666666666555555444322222221 24556666777778888888888777763
No 142
>PRK01156 chromosome segregation protein; Provisional
Probab=86.40 E-value=54 Score=40.29 Aligned_cols=20 Identities=5% Similarity=0.008 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006200 530 EKAQIESDSSMYRNLAAKME 549 (657)
Q Consensus 530 e~~~~eae~~~~~~~a~~le 549 (657)
++..++.+.+..+.....++
T Consensus 219 ~i~~~~~el~~~~~~l~~l~ 238 (895)
T PRK01156 219 EIERLSIEYNNAMDDYNNLK 238 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 143
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=86.38 E-value=21 Score=40.67 Aligned_cols=20 Identities=10% Similarity=-0.011 Sum_probs=10.3
Q ss_pred HHHHHhhhhhhhHHHHHHHH
Q 006200 609 DLLVCLGQEQSKVEKLSARL 628 (657)
Q Consensus 609 dLl~ll~d~~~K~~~~k~~L 628 (657)
.+..|--|.+.+.+.|...+
T Consensus 356 el~~L~Re~~~~~~~Y~~l~ 375 (498)
T TIGR03007 356 ELTQLNRDYEVNKSNYEQLL 375 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555543
No 144
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=86.19 E-value=27 Score=37.87 Aligned_cols=80 Identities=18% Similarity=0.166 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 463 AFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYR 542 (657)
Q Consensus 463 ~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~ 542 (657)
..+..-+.-+..++.+...|..++.+.+.... ....-...++..++.+|.+....++..+.+...++.++..+.
T Consensus 165 ~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~------e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~ 238 (312)
T smart00787 165 KELELLNSIKPKLRDRKDALEEELRQLKQLED------ELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELE 238 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH------HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444445555555555544432110 000112334444555555444444444444444444444333
Q ss_pred HHHHHH
Q 006200 543 NLAAKM 548 (657)
Q Consensus 543 ~~a~~l 548 (657)
..++..
T Consensus 239 ~~I~~~ 244 (312)
T smart00787 239 SKIEDL 244 (312)
T ss_pred HHHHHH
Confidence 333333
No 145
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=86.16 E-value=45 Score=41.73 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=11.5
Q ss_pred hHHHHHhhhhhhhHHHHHH
Q 006200 608 NDLLVCLGQEQSKVEKLSA 626 (657)
Q Consensus 608 ~dLl~ll~d~~~K~~~~k~ 626 (657)
+.---||.+-.+|+.+++.
T Consensus 1696 ~eA~~Ll~~a~~kl~~l~d 1714 (1758)
T KOG0994|consen 1696 TEAEKLLGQANEKLDRLKD 1714 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333455677777777664
No 146
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=86.04 E-value=27 Score=36.27 Aligned_cols=64 Identities=25% Similarity=0.288 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 514 RKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 514 ~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
+++.+.+..+......+++++..++..+...+...+++-+........+..+...|..++.++|
T Consensus 38 ~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R 101 (230)
T PF10146_consen 38 RKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444444444444444444444444444444444444444444444
No 147
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.74 E-value=43 Score=35.50 Aligned_cols=48 Identities=15% Similarity=0.329 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKS 554 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ 554 (657)
+.+++.|..++++.+..+..++.++.+.++++..+++-+..++.++..
T Consensus 51 q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 51 QNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777777777777777777777777655554
No 148
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=85.71 E-value=69 Score=38.75 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=12.5
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 006200 458 VKRLKAF-VEKQCSEIQKLLGRNATLAE 484 (657)
Q Consensus 458 v~~lk~~-i~~Q~~eiq~L~~~~~~L~~ 484 (657)
+..||+. |++++..-.+++.++..|+.
T Consensus 545 ~~vlreeYi~~~~~ar~ei~~rv~~Lk~ 572 (717)
T PF10168_consen 545 TKVLREEYIEKQDLAREEIQRRVKLLKQ 572 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444 44444444444555444444
No 149
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=85.68 E-value=19 Score=42.63 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=33.8
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006200 452 ESDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIG 490 (657)
Q Consensus 452 ~~s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~ 490 (657)
......++.|...|..|+.++...+.+|.+|.++|+...
T Consensus 87 t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE 125 (916)
T KOG0249|consen 87 TSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAE 125 (916)
T ss_pred CCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhh
Confidence 355678999999999999999999999999999986543
No 150
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=85.24 E-value=48 Score=37.54 Aligned_cols=33 Identities=21% Similarity=0.207 Sum_probs=21.1
Q ss_pred HHHHHHHHhHhHHHHHhhhhhhhHHHHHHHHHH
Q 006200 598 EAQKESEAELNDLLVCLGQEQSKVEKLSARLLE 630 (657)
Q Consensus 598 e~~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~ 630 (657)
+.+...+.++++.---+...+..+.+.+.+|..
T Consensus 284 ~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~ 316 (457)
T TIGR01000 284 QQLAKVKQEITDLNQKLLELESKIKSLKEDSQK 316 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334556666666666666777777777766644
No 151
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.05 E-value=83 Score=36.69 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006200 456 DYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKI 489 (657)
Q Consensus 456 ~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~ 489 (657)
..+..+++.|+++..|++.+++.+..|+.++...
T Consensus 294 ~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q 327 (581)
T KOG0995|consen 294 KKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ 327 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3677899999999999999999999999987544
No 152
>PF13514 AAA_27: AAA domain
Probab=84.94 E-value=50 Score=41.80 Aligned_cols=32 Identities=31% Similarity=0.285 Sum_probs=16.0
Q ss_pred HHHHHHhHhHHHHHhhhhhhhHHHHHHHHHHc
Q 006200 600 QKESEAELNDLLVCLGQEQSKVEKLSARLLEL 631 (657)
Q Consensus 600 ~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~l 631 (657)
+.+++.++++|-.=+.+....+...+..|..+
T Consensus 898 l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l 929 (1111)
T PF13514_consen 898 LEELEEELEELEEELEELQEERAELEQELEAL 929 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555554444445555555555555444
No 153
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=84.61 E-value=30 Score=38.31 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 006200 472 IQKLLGRNATLAEELAKIGG 491 (657)
Q Consensus 472 iq~L~~~~~~L~~~l~~~~~ 491 (657)
+.+++.++..+..+|+..++
T Consensus 76 lddi~~qlr~~rtel~~a~~ 95 (499)
T COG4372 76 LDDIRPQLRALRTELGTAQG 95 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44456666677777655544
No 154
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=84.16 E-value=78 Score=38.17 Aligned_cols=32 Identities=9% Similarity=0.113 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006200 458 VKRLKAFVEKQCSEIQKLLGRNATLAEELAKI 489 (657)
Q Consensus 458 v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~ 489 (657)
+..+..++..-..+....+.+...+...+.+.
T Consensus 239 L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~ 270 (754)
T TIGR01005 239 LAELNTELSRARANRAAAEGTADSVKKALQNG 270 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44455555555556666677777777766543
No 155
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=83.74 E-value=12 Score=31.69 Aligned_cols=61 Identities=20% Similarity=0.277 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHH
Q 006200 513 LRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKAL 576 (657)
Q Consensus 513 L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~l 576 (657)
|...|+++++.. ..+...|+...+.++...+..+.+...|+..++.|.+++.+|.+.+..|
T Consensus 8 Ll~ale~Lq~~y---~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 8 LLSALEELQQSY---EKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555666666644 4466789999999999999999998899999999999888888877665
No 156
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.58 E-value=70 Score=37.08 Aligned_cols=86 Identities=20% Similarity=0.246 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcCCCCCC-ccc-------HHHHHHHHHHHHHHHH
Q 006200 532 AQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVS-SPD-------VEAIKAEAREEAQKES 603 (657)
Q Consensus 532 ~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~~~~~~-~~~-------l~~~~~~~~~e~~~~~ 603 (657)
.-++.++..+..+..+.++.|+++..++++-..++..++.+++.++.....+. .++ ++.+.. .-+.+...+
T Consensus 362 ~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar~~pe~~d~i~~le~e~~-~y~de~~ka 440 (654)
T KOG4809|consen 362 IDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDARMNPEFADQIKQLEKEAS-YYRDECGKA 440 (654)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcChhhHHHHHHHHHHHH-HHHHHHHHH
Confidence 44455555555666666667777777777777788888888888876432110 011 222111 223345678
Q ss_pred HHhHhHHHHHhhhhh
Q 006200 604 EAELNDLLVCLGQEQ 618 (657)
Q Consensus 604 ~~e~~dLl~ll~d~~ 618 (657)
+++.+-||.++.+.+
T Consensus 441 qaevdrlLeilkeve 455 (654)
T KOG4809|consen 441 QAEVDRLLEILKEVE 455 (654)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888899999988644
No 157
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=83.48 E-value=10 Score=38.94 Aligned_cols=55 Identities=24% Similarity=0.384 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHH
Q 006200 511 ETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQT 565 (657)
Q Consensus 511 e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~ 565 (657)
+.|...|++.+...++++..+.+++-|.+.+.....++.-.+..|.++..+|+-.
T Consensus 152 eeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 152 EELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 3444445555555555555555555555555555555555555555666655533
No 158
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=83.16 E-value=40 Score=40.52 Aligned_cols=69 Identities=17% Similarity=0.290 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcC
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSG 579 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~ 579 (657)
+.|...|+.++.+.+.+-..+=.....+|.|.-.+++.++-+. +-+..|+++--++.|+++|..-++.+
T Consensus 75 e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk----~sQvefE~~Khei~rl~Ee~~~l~~q 143 (717)
T PF09730_consen 75 ELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLK----QSQVEFEGLKHEIKRLEEEIELLNSQ 143 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667788877776655555666777777777776666554 45566777777888888887777643
No 159
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=83.04 E-value=36 Score=38.42 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 532 AQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 532 ~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
..++.+..++.+.-.-+|..+.+++.+++.+..+....+++.+.|++
T Consensus 364 ~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~k 410 (493)
T KOG0804|consen 364 DSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIK 410 (493)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444455555566666666666666655666666654
No 160
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=82.91 E-value=76 Score=37.77 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=13.5
Q ss_pred HHHHHhhcChHHHHHhhcCCChH
Q 006200 272 LLVTWLADCPNAVHCFLDSRPHL 294 (657)
Q Consensus 272 LL~~WL~e~p~AV~~FL~~~s~l 294 (657)
|+.--|.+|-.-++...++|.-|
T Consensus 443 l~~DeLaEkdE~I~~lm~EGEkL 465 (961)
T KOG4673|consen 443 LLKDELAEKDEIINQLMAEGEKL 465 (961)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHh
Confidence 33345666666666666666543
No 161
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=82.80 E-value=6.2 Score=35.89 Aligned_cols=72 Identities=19% Similarity=0.176 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHh-ccCchhHHhHHHHHHHHhhcCChhhHHHHHhhh
Q 006200 82 VRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIIL-RTSSMQEFLAADRIFNSFCEKNPDGQAMLTSTL 160 (657)
Q Consensus 82 Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L-~~~~~~~r~AA~~cf~ayl~~N~~~q~~L~~tl 160 (657)
+|..-++.+|.+...|+.+|+.+....- .| .+|..+. -..+|-.|--|.+|++..+.+|++.|.+|.+ |
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~G------i~---liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~-L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGG------IP---LILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ-L 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCC------hH---HHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh-c
Confidence 4778899999999999999999876633 23 3344432 3444666778999999999999999999885 4
Q ss_pred cCC
Q 006200 161 IPQ 163 (657)
Q Consensus 161 ~p~ 163 (657)
.|.
T Consensus 72 ~~~ 74 (102)
T PF09759_consen 72 EPQ 74 (102)
T ss_pred ccc
Confidence 443
No 162
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=82.57 E-value=65 Score=33.48 Aligned_cols=10 Identities=20% Similarity=0.321 Sum_probs=4.3
Q ss_pred cCchhhhhhc
Q 006200 631 LGEDVEKLLE 640 (657)
Q Consensus 631 lg~~v~~~~~ 640 (657)
.|-.++--.+
T Consensus 164 yg~~i~~~~~ 173 (251)
T PF11932_consen 164 YGRTIEVYQG 173 (251)
T ss_pred hCCceeEEEE
Confidence 4544444333
No 163
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=82.47 E-value=59 Score=36.46 Aligned_cols=61 Identities=13% Similarity=0.213 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhH
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNF 567 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~ 567 (657)
...+.+|+.+|++..++.+.+.+|+..+++|....++-..+.|..|+.|+....+|..+..
T Consensus 12 dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v 72 (459)
T KOG0288|consen 12 DQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERV 72 (459)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666666667777777777777666666666666666655555543333
No 164
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=82.33 E-value=28 Score=29.67 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 456 DYVKRLKAFVEKQCSEIQKLLGRNATLAE 484 (657)
Q Consensus 456 ~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~ 484 (657)
++.+.|-..|..--..|+-|+.++..|++
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke 32 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKE 32 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555554444444444
No 165
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=82.12 E-value=64 Score=33.09 Aligned_cols=69 Identities=20% Similarity=0.286 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
...+..|++.|...++.++.++.++...+.++.. ....|+..-..+-.+.-++|..+..|++|++.+|+
T Consensus 142 e~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~---~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~ 210 (221)
T PF05700_consen 142 EAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGE---ELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKR 210 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777666554444332 22234433334444555566777777777777663
No 166
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=82.01 E-value=56 Score=39.72 Aligned_cols=51 Identities=25% Similarity=0.395 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 528 KEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 528 ~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
+..+..++++++..+++.+.++..++.....|..++.+..-++.|+..++.
T Consensus 630 E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~ 680 (769)
T PF05911_consen 630 EQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQS 680 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 333444556666666666777777777777777776666666666666653
No 167
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=82.01 E-value=31 Score=37.40 Aligned_cols=60 Identities=22% Similarity=0.256 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHH
Q 006200 512 TLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEK 571 (657)
Q Consensus 512 ~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~ 571 (657)
.|.+++.+++.+.+.++.+..+.-.+...++....+++.+..++..+|.....++.+|++
T Consensus 75 ~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 75 ELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444444444445555555555555555554444443
No 168
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=81.89 E-value=48 Score=41.94 Aligned_cols=10 Identities=10% Similarity=0.049 Sum_probs=4.9
Q ss_pred HHHHhhhhHh
Q 006200 314 AAVLLGECVI 323 (657)
Q Consensus 314 ~A~LLG~Cv~ 323 (657)
..||+|+|+.
T Consensus 5 ~~~~~~~~~~ 14 (1109)
T PRK10929 5 ITFLMAWLLS 14 (1109)
T ss_pred HHHHHHHHHh
Confidence 3455554444
No 169
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.86 E-value=75 Score=38.35 Aligned_cols=40 Identities=10% Similarity=0.155 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 539 SMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 539 ~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
..-++++-.+....+.|+..++.|.-.++.|+..+...|-
T Consensus 426 ~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~ 465 (1118)
T KOG1029|consen 426 NREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRV 465 (1118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhee
Confidence 3333444444444444555555555555555555544443
No 170
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.71 E-value=36 Score=39.29 Aligned_cols=44 Identities=16% Similarity=0.119 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhH
Q 006200 513 LRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLS 556 (657)
Q Consensus 513 L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls 556 (657)
|+.....+......+..++..++-.++.-++..++|+.+|.++.
T Consensus 364 lkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh 407 (654)
T KOG4809|consen 364 LKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAH 407 (654)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444455555555555666666666666654
No 171
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=81.67 E-value=73 Score=38.18 Aligned_cols=34 Identities=21% Similarity=0.169 Sum_probs=19.3
Q ss_pred HHHHHHhHhHHHHHhhhhhhhHHHHHHHHHHcCc
Q 006200 600 QKESEAELNDLLVCLGQEQSKVEKLSARLLELGE 633 (657)
Q Consensus 600 ~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~lg~ 633 (657)
....++.++|+-...++....+...+..++.+-.
T Consensus 575 ~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleE 608 (698)
T KOG0978|consen 575 LEKSEAKLEQIQEQYAELELELEIEKFKRKRLEE 608 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666555554444433
No 172
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=81.50 E-value=30 Score=31.06 Aligned_cols=60 Identities=22% Similarity=0.344 Sum_probs=36.6
Q ss_pred HHHHHHhHHHHHHhhhhhcCCCCCccccchhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006200 414 VDIIKSLESSIRENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIG 490 (657)
Q Consensus 414 v~f~K~n~~~I~~ai~~~~~dP~~e~~~~~~~~~~~~~~~s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~ 490 (657)
++||++|...++.++.. +. ... ..-+-+-.|-..-+.-..+++.|+.+-..++.++++..
T Consensus 4 ik~ir~n~e~v~~~l~~--R~-~~~--------------~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~ 63 (108)
T PF02403_consen 4 IKLIRENPEEVRENLKK--RG-GDE--------------EDVDEIIELDQERRELQQELEELRAERNELSKEIGKLK 63 (108)
T ss_dssp HHHHHHHHHHHHHHHHH--TT-CCC--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCHHHHHHHHHH--cC-CCH--------------hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 47889999999998852 21 100 11112223445566666777777777777777765554
No 173
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=81.32 E-value=1.8e+02 Score=37.82 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=14.6
Q ss_pred CcHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 006200 453 SDKDYVKRLKAFVE---KQCSEIQKLLGRNATLAE 484 (657)
Q Consensus 453 ~s~~~v~~lk~~i~---~Q~~eiq~L~~~~~~L~~ 484 (657)
.+...|..+.+-++ .....|++++.++..|..
T Consensus 217 l~~~~i~~l~e~~~~~~~~~~~le~l~~~~~~l~~ 251 (1353)
T TIGR02680 217 LDDDELTDVADALEQLDEYRDELERLEALERALRN 251 (1353)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555655554433 333344444444444443
No 174
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=81.22 E-value=72 Score=33.06 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHh
Q 006200 528 KEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFH 568 (657)
Q Consensus 528 ~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~ 568 (657)
+.....+++++........+|+..+..|..+|.++++....
T Consensus 98 e~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~ 138 (225)
T COG1842 98 EDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEA 138 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555544333
No 175
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=80.92 E-value=59 Score=39.68 Aligned_cols=34 Identities=15% Similarity=0.314 Sum_probs=26.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 453 SDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEEL 486 (657)
Q Consensus 453 ~s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l 486 (657)
...++|.+=++.+.++..++.++-.++.....++
T Consensus 499 lp~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~ 532 (782)
T PRK00409 499 LPENIIEEAKKLIGEDKEKLNELIASLEELEREL 532 (782)
T ss_pred cCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 6788999999999988888888777766655543
No 176
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=80.91 E-value=41 Score=31.47 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 514 RKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKME 549 (657)
Q Consensus 514 ~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le 549 (657)
-.++.+++.++..+-.++..+++++........+++
T Consensus 12 l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele 47 (119)
T COG1382 12 LAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELE 47 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444455555555555444444444
No 177
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=80.79 E-value=0.51 Score=57.62 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=0.0
Q ss_pred HHHHHHhHhHHHHHhhhhhhhHHHHHHHHHHcCchhhh
Q 006200 600 QKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVEK 637 (657)
Q Consensus 600 ~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~lg~~v~~ 637 (657)
+..++.+.+.|-.-+.+.......+...|..+-.++..
T Consensus 266 l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~ 303 (859)
T PF01576_consen 266 LRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQ 303 (859)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHH
Confidence 45566666666666666666666666666555544443
No 178
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=80.55 E-value=1.2e+02 Score=35.22 Aligned_cols=13 Identities=15% Similarity=0.289 Sum_probs=7.0
Q ss_pred HHHHHHhcccccc
Q 006200 216 QCKERVLRIELEA 228 (657)
Q Consensus 216 ~~Ke~al~V~l~~ 228 (657)
..|+.+.+|..+.
T Consensus 134 ~~k~EL~~lr~e~ 146 (522)
T PF05701_consen 134 SVKQELEKLRQEL 146 (522)
T ss_pred HHHHHHHHHHHHH
Confidence 4455566665443
No 179
>PRK11281 hypothetical protein; Provisional
Probab=80.46 E-value=75 Score=40.33 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006200 461 LKAFVEKQCSEIQKLLGRNATLAEELAK 488 (657)
Q Consensus 461 lk~~i~~Q~~eiq~L~~~~~~L~~~l~~ 488 (657)
|...+.+-..++++.+.+++.+..++..
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~ 153 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVS 153 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555556666666666666666666543
No 180
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=80.43 E-value=35 Score=35.45 Aligned_cols=26 Identities=19% Similarity=0.118 Sum_probs=10.8
Q ss_pred hHHHHHhhhhhhh-HHHHHHHHHHcCc
Q 006200 608 NDLLVCLGQEQSK-VEKLSARLLELGE 633 (657)
Q Consensus 608 ~dLl~ll~d~~~K-~~~~k~~L~~lg~ 633 (657)
+.|--.|++-+-. ..|||+-|..+..
T Consensus 134 ~~L~~~l~~~dv~~~ek~r~vlea~~~ 160 (251)
T PF11932_consen 134 ARLRAMLDDADVSLAEKFRRVLEAYQI 160 (251)
T ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHH
Confidence 3344444443322 2355554444433
No 181
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=80.38 E-value=62 Score=31.79 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006200 459 KRLKAFVEKQCSEIQKLLGRNAT 481 (657)
Q Consensus 459 ~~lk~~i~~Q~~eiq~L~~~~~~ 481 (657)
..|.+.|++...++..|+.....
T Consensus 52 ~~l~~kIeERn~eL~~Lk~~~~~ 74 (177)
T PF13870_consen 52 QQLNEKIEERNKELLKLKKKIGK 74 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888777766433
No 182
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.21 E-value=76 Score=38.31 Aligned_cols=98 Identities=15% Similarity=0.170 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 455 KDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQI 534 (657)
Q Consensus 455 ~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~ 534 (657)
.+-+++|+..|+++.+.++.|-.+-..|..++.+.+... .....+...|++...+...-+.+++++...+
T Consensus 485 isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~----------~~~~~~~s~L~aa~~~ke~irq~ikdqldel 554 (1118)
T KOG1029|consen 485 ISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAH----------KETTQRKSELEAARRKKELIRQAIKDQLDEL 554 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhc----------cCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666666666666555555555554444211 0111122334333333333344556666666
Q ss_pred HHHHHHHHHHHHHHHHhHHHhHHHHhHH
Q 006200 535 ESDSSMYRNLAAKMESDLKSLSDAYNSL 562 (657)
Q Consensus 535 eae~~~~~~~a~~le~~l~~ls~~~~~L 562 (657)
+.|.++-.+-+.-..+.++.|..-|+++
T Consensus 555 skE~esk~~eidi~n~qlkelk~~~~~q 582 (1118)
T KOG1029|consen 555 SKETESKLNEIDIFNNQLKELKEDVNSQ 582 (1118)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 6666665555555556666666555543
No 183
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=79.85 E-value=1.4e+02 Score=35.68 Aligned_cols=32 Identities=28% Similarity=0.265 Sum_probs=22.0
Q ss_pred HHHHHHhHhHHHHHhhhhhhhHHHHHHHHHHc
Q 006200 600 QKESEAELNDLLVCLGQEQSKVEKLSARLLEL 631 (657)
Q Consensus 600 ~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~l 631 (657)
+.++++|+---.|-|-+.+.+..+-|.|-.++
T Consensus 598 LNeARREHtKaVVsLRQ~qrqa~reKer~~E~ 629 (739)
T PF07111_consen 598 LNEARREHTKAVVSLRQIQRQAAREKERNQEL 629 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhHHH
Confidence 45566666667777777777777777666555
No 184
>PRK01156 chromosome segregation protein; Provisional
Probab=79.75 E-value=1.3e+02 Score=36.94 Aligned_cols=22 Identities=9% Similarity=0.258 Sum_probs=11.8
Q ss_pred HHHHHhhcchhhHHHHHHHHhc
Q 006200 338 VDSISQKVGLTSYFLKFDEMQK 359 (657)
Q Consensus 338 ~~lI~~RiG~d~y~~kl~~lr~ 359 (657)
..+|..-+|.+.|...+..++.
T Consensus 152 ~~~ld~~~~~~~~~~~~~~~~~ 173 (895)
T PRK01156 152 KKILDEILEINSLERNYDKLKD 173 (895)
T ss_pred HHHHHHHhChHHHHHHHHHHHH
Confidence 4445555566666555554443
No 185
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=79.75 E-value=38 Score=30.82 Aligned_cols=8 Identities=25% Similarity=0.289 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 006200 472 IQKLLGRN 479 (657)
Q Consensus 472 iq~L~~~~ 479 (657)
++.+++++
T Consensus 12 ~q~~q~~~ 19 (110)
T TIGR02338 12 LQQLQQQL 19 (110)
T ss_pred HHHHHHHH
Confidence 33333333
No 186
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=79.62 E-value=35 Score=31.30 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKME 549 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le 549 (657)
+.++..|.+.|+..+..++.|..++..+++-...+++......
T Consensus 15 ~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~ 57 (107)
T PF09304_consen 15 QNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRN 57 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666555555555544444444333333333
No 187
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=79.23 E-value=62 Score=39.44 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=24.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 453 SDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEE 485 (657)
Q Consensus 453 ~s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~ 485 (657)
...+++++-++.+.....++.++-+++.....+
T Consensus 494 lp~~ii~~A~~~~~~~~~~~~~li~~L~~~~~~ 526 (771)
T TIGR01069 494 IPHFIIEQAKTFYGEFKEEINVLIEKLSALEKE 526 (771)
T ss_pred cCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 667888888888888887877776665555553
No 188
>PF13514 AAA_27: AAA domain
Probab=78.96 E-value=1.1e+02 Score=38.95 Aligned_cols=35 Identities=23% Similarity=0.152 Sum_probs=22.9
Q ss_pred HHHHHHHhHhHHHHHhhhhhhhHHHHHHHHHHcCc
Q 006200 599 AQKESEAELNDLLVCLGQEQSKVEKLSARLLELGE 633 (657)
Q Consensus 599 ~~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~lg~ 633 (657)
.+...++...|+--+=.+...........+..+|.
T Consensus 294 ~~~~~~~~~~dl~~~~~e~~~~~~~~~~~~~~lg~ 328 (1111)
T PF13514_consen 294 QRGEYRKARQDLPRLEAELAELEAELRALLAQLGP 328 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34455666666666666666677777777777773
No 189
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=78.61 E-value=50 Score=35.63 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 511 ETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMES 550 (657)
Q Consensus 511 e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~ 550 (657)
..|.+|++-.+.++.-|+.-.++-=+|++.+.+++.+||.
T Consensus 10 ~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEE 49 (351)
T PF07058_consen 10 QELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEE 49 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444445556666666666664
No 190
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=78.60 E-value=28 Score=28.82 Aligned_cols=45 Identities=24% Similarity=0.320 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 533 QIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 533 ~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
.+..|+...+..--..+..|+....+...|++++..|++++.++|
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555566666777777777777888888888777776
No 191
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=78.44 E-value=54 Score=36.79 Aligned_cols=96 Identities=17% Similarity=0.141 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 006200 455 KDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEK--- 531 (657)
Q Consensus 455 ~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~--- 531 (657)
...+..+++.+++-.+....|+..+..|+.++ ..++.-+.+.|++.+-+.+.|+++.
T Consensus 211 ~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~--------------------~~e~~~~~~~LqEEr~R~erLEeqlNd~ 270 (395)
T PF10267_consen 211 NLGLQKILEELREIKESQSRLEESIEKLKEQY--------------------QREYQFILEALQEERYRYERLEEQLNDL 270 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44555566666666666666666666666643 3345556677777776666665554
Q ss_pred -HHHHHHHHHHHHHHHHHHHhHHHhH--------HHHhHHHHHhHhHH
Q 006200 532 -AQIESDSSMYRNLAAKMESDLKSLS--------DAYNSLEQTNFHLE 570 (657)
Q Consensus 532 -~~~eae~~~~~~~a~~le~~l~~ls--------~~~~~Le~~~~~le 570 (657)
.....|+.++|+...-||..+...+ +.+++....+.++|
T Consensus 271 ~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 271 TELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 7778888888888877776544433 44555555555666
No 192
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=77.67 E-value=56 Score=29.73 Aligned_cols=10 Identities=20% Similarity=0.408 Sum_probs=4.0
Q ss_pred HHHHHHhHhH
Q 006200 600 QKESEAELND 609 (657)
Q Consensus 600 ~~~~~~e~~d 609 (657)
.+++++.+..
T Consensus 97 l~e~q~~l~~ 106 (110)
T TIGR02338 97 LKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 193
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=77.59 E-value=86 Score=31.86 Aligned_cols=170 Identities=25% Similarity=0.239 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhh----cc--ccHHHHHHHHHHHHHHHHHHHHHH---
Q 006200 458 VKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRAS----GA--LDRVQVETLRKDLHEASQRLEILK--- 528 (657)
Q Consensus 458 v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~----~~--~~~~q~e~L~~~L~~~~~~~e~l~--- 528 (657)
|+.++..|.--..++...+.+++.+.++|....+.. +..-|.. +. -.+..++.+..||.+++...+...
T Consensus 6 va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~--dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~ 83 (205)
T KOG1003|consen 6 VAALNRRIQLLEEELDRAQERLATALQKLEEAEQAA--DESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKY 83 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666677777777777777775443211 1100100 01 123456667777777765443221
Q ss_pred ----HHHHHHHHHHHH-------HHHHHHHHH-------HhHHHhHHHHhHHHHHhHhHHHHHHHHHcCCCCCCcccHHH
Q 006200 529 ----EEKAQIESDSSM-------YRNLAAKME-------SDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEA 590 (657)
Q Consensus 529 ----~e~~~~eae~~~-------~~~~a~~le-------~~l~~ls~~~~~Le~~~~~le~e~~~lr~~~~~~~~~~l~~ 590 (657)
..+.-++.+++. --..+.+|+ +++.+|+.+-..+++..-.++.+++.+-.++. + ..
T Consensus 84 eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLk---E---aE 157 (205)
T KOG1003|consen 84 EEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLK---E---AE 157 (205)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh---h---hh
Confidence 112222222222 222223333 34444544444445555556666666554322 0 01
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHhhhhhhhHHHHHHHHHHcCchhhhh
Q 006200 591 IKAEAREEAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVEKL 638 (657)
Q Consensus 591 ~~~~~~~e~~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~lg~~v~~~ 638 (657)
.+++-.+...+.++++.|||=--+...-.| |+..-.+|++.+.+.
T Consensus 158 ~rAE~aERsVakLeke~DdlE~kl~~~k~k---y~~~~~eLD~~~~~L 202 (205)
T KOG1003|consen 158 TRAEFAERRVAKLEKERDDLEEKLEEAKEK---YEEAKKELDETLQEL 202 (205)
T ss_pred hhHHHHHHHHHHHcccHHHHHHhhHHHHHH---HHHHHHHHHHHHHHh
Confidence 234445556777888888875555444333 444445566555544
No 194
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=77.43 E-value=1.2e+02 Score=33.79 Aligned_cols=21 Identities=10% Similarity=0.096 Sum_probs=12.7
Q ss_pred HHHHHhhhhhhhHHHHHHHHH
Q 006200 609 DLLVCLGQEQSKVEKLSARLL 629 (657)
Q Consensus 609 dLl~ll~d~~~K~~~~k~~L~ 629 (657)
.+..|--|.+.+...|...|.
T Consensus 343 ~~~~L~r~~~~~~~~y~~ll~ 363 (444)
T TIGR03017 343 EMSVLQRDVENAQRAYDAAMQ 363 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555666667777766443
No 195
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=77.25 E-value=1.6e+02 Score=36.91 Aligned_cols=31 Identities=13% Similarity=0.157 Sum_probs=17.4
Q ss_pred ChhHHHHHHH----hhcchhhHHHHHHHHhcccccc
Q 006200 333 DAFSIVDSIS----QKVGLTSYFLKFDEMQKSFLFS 364 (657)
Q Consensus 333 ds~~l~~lI~----~RiG~d~y~~kl~~lr~~~~f~ 364 (657)
++..++.+|. +|.-..+++.+..- |.|..|+
T Consensus 237 ~A~ei~klLekGs~kRrtAaTl~N~~SS-RSHsIFs 271 (1041)
T KOG0243|consen 237 NADEIYKLLEKGSKKRRTAATLMNDQSS-RSHSIFS 271 (1041)
T ss_pred chhHHHHHHHhhhhHhHHHHHHhhhhcc-ccceEEE
Confidence 4455555554 35555555555443 6677776
No 196
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=76.82 E-value=18 Score=38.00 Aligned_cols=134 Identities=16% Similarity=0.175 Sum_probs=80.7
Q ss_pred CCCCchhHHHHHHHHHHHhh-------HhccCCCCCCCCCccchhhhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHH
Q 006200 16 AYSFTQQKTINLLSALETIN-------LLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALR 88 (657)
Q Consensus 16 ~~~W~~Qk~~N~~~~L~ivr-------llV~~g~~~~~~~~~~~~~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~ 88 (657)
.-.|++|-..++.++|+.-+ .+..-|+.+ .-+.||..+.+.|.+..+..+.= ++ ...||..||.
T Consensus 6 ~~~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~a------af~~nq~~Ir~~Ggi~lI~~lL~-~p--~~~vr~~AL~ 76 (254)
T PF04826_consen 6 KNILEAQELQKLLCLLESTEDPFIQEKALIALGNSA------AFPFNQDIIRDLGGISLIGSLLN-DP--NPSVREKALN 76 (254)
T ss_pred cCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhc------cChhHHHHHHHcCCHHHHHHHcC-CC--ChHHHHHHHH
Confidence 34599999999999998543 122223322 12389999999999999988876 33 6799999999
Q ss_pred HHHHHHhcChhhHHHhhccccC-------CCCcc---chHHHHHHHHHhccCchhHH--hHHHHHHHHhhcCChhhHHHH
Q 006200 89 CISDIIAAHPKNRDVLASKVLG-------EEPQV---EAALNSILRIILRTSSMQEF--LAADRIFNSFCEKNPDGQAML 156 (657)
Q Consensus 89 t~adlIrgn~~nQ~~fa~~~vp-------~~p~~---~pal~~LL~~~L~~~~~~~r--~AA~~cf~ayl~~N~~~q~~L 156 (657)
++..+ ..+..||..-. ..++ +.|.. +-+...+|..|--.+..|.- -..-++|.-...+|...|...
T Consensus 77 aL~Nl-s~~~en~~~Ik-~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~v 154 (254)
T PF04826_consen 77 ALNNL-SVNDENQEQIK-MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQV 154 (254)
T ss_pred HHHhc-CCChhhHHHHH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHH
Confidence 99976 67787877643 3343 11211 11223333333222222222 223345666666777776433
Q ss_pred Hhhh
Q 006200 157 TSTL 160 (657)
Q Consensus 157 ~~tl 160 (657)
...|
T Consensus 155 Lk~L 158 (254)
T PF04826_consen 155 LKVL 158 (254)
T ss_pred HHHH
Confidence 3333
No 197
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=76.77 E-value=47 Score=28.85 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 006200 470 SEIQKLLGRNATLAEE 485 (657)
Q Consensus 470 ~eiq~L~~~~~~L~~~ 485 (657)
-+|.+|+.+|..|.++
T Consensus 25 mEieELKekn~~L~~e 40 (79)
T PRK15422 25 MEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566667777777764
No 198
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=76.65 E-value=1e+02 Score=38.16 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=13.3
Q ss_pred HHHhHhHHHHHhhhhhhhHHHHHHHHHHc
Q 006200 603 SEAELNDLLVCLGQEQSKVEKLSARLLEL 631 (657)
Q Consensus 603 ~~~e~~dLl~ll~d~~~K~~~~k~~L~~l 631 (657)
-+.|+...+=...++-++-.+++.||..|
T Consensus 340 ~~~EL~~I~Pky~~l~~ee~~~~~rl~~l 368 (1200)
T KOG0964|consen 340 KKDELSKIEPKYNSLVDEEKRLKKRLAKL 368 (1200)
T ss_pred HHHHHHHhhhHHHHHHhHHHHHHHHHHHH
Confidence 33344444444444444455555554444
No 199
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=76.45 E-value=27 Score=39.74 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006200 457 YVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIG 490 (657)
Q Consensus 457 ~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~ 490 (657)
-|..|-..+++-.++++.|..+|..|.++..+.+
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~ 93 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQ 93 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566667778888888888888765443
No 200
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=76.43 E-value=1.2e+02 Score=34.68 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006200 457 YVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIG 490 (657)
Q Consensus 457 ~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~ 490 (657)
.+.+|++.|+.+.++|+-|++....|..++.+.+
T Consensus 331 ~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~ 364 (622)
T COG5185 331 KLEKLKSEIELKEEEIKALQSNIDELHKQLRKQG 364 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcC
Confidence 6778999999999999999999999999875444
No 201
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=76.23 E-value=52 Score=33.90 Aligned_cols=10 Identities=20% Similarity=0.338 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 006200 475 LLGRNATLAE 484 (657)
Q Consensus 475 L~~~~~~L~~ 484 (657)
+..++..++.
T Consensus 132 ~~~~~~~lk~ 141 (216)
T KOG1962|consen 132 AMKENEALKK 141 (216)
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 202
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=76.21 E-value=73 Score=31.99 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006200 457 YVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIG 490 (657)
Q Consensus 457 ~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~ 490 (657)
....++..+.+-.++++.++.++..++.++....
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~ 96 (188)
T PF03962_consen 63 AKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAK 96 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455777777888888888888888888776554
No 203
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=76.09 E-value=22 Score=32.38 Aligned_cols=16 Identities=19% Similarity=0.055 Sum_probs=10.8
Q ss_pred HHHHHHHhHHHHHHhh
Q 006200 413 FVDIIKSLESSIRENI 428 (657)
Q Consensus 413 Fv~f~K~n~~~I~~ai 428 (657)
|.+|+|.+++-|...+
T Consensus 1 ~~~~~~~~w~ii~a~~ 16 (106)
T PF10805_consen 1 MWEFIKKNWGIIWAVF 16 (106)
T ss_pred ChHHHHhCcHHHHHHH
Confidence 4567888887766544
No 204
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=75.80 E-value=6.1 Score=42.89 Aligned_cols=73 Identities=25% Similarity=0.291 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcCCC
Q 006200 509 QVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGS 581 (657)
Q Consensus 509 q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~~~ 581 (657)
.+.+++..+...+..+..+..-...++..+.+++..++.++.++.+|+.-++.+--.+..|++.++.++.+.+
T Consensus 85 tV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~~s 157 (326)
T PF04582_consen 85 TVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESGSS 157 (326)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcCCC
Confidence 4455555666666666666666677788888888888888888888888888888888889999999987755
No 205
>PRK14154 heat shock protein GrpE; Provisional
Probab=75.51 E-value=62 Score=33.17 Aligned_cols=50 Identities=14% Similarity=0.225 Sum_probs=40.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006200 504 ALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLK 553 (657)
Q Consensus 504 ~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~ 553 (657)
++.-..++.|+.++++++++++.+++...++.|+.++|++.+.+-..+..
T Consensus 48 ~~~~~~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~ 97 (208)
T PRK14154 48 GLEFPSREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADII 97 (208)
T ss_pred cccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888899999999999999999999999999988777664443
No 206
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=75.02 E-value=33 Score=32.84 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 459 KRLKAFVEKQCSEIQKLLGRNATLAEEL 486 (657)
Q Consensus 459 ~~lk~~i~~Q~~eiq~L~~~~~~L~~~l 486 (657)
..++..++.+...+...+..+..+..++
T Consensus 22 ~~l~~~~~~a~~~~~~~~~~l~~~~~qL 49 (135)
T TIGR03495 22 RNARADLERANRVLKAQQAELASKANQL 49 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3455556666666655555555555444
No 207
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=74.99 E-value=1.2e+02 Score=36.77 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhH
Q 006200 530 EKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHL 569 (657)
Q Consensus 530 e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~l 569 (657)
++..++.+.+.+++.+.++..++..+.++.+.|.++..++
T Consensus 580 ~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~v 619 (717)
T PF10168_consen 580 ELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRV 619 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555566666666666666666666665554443
No 208
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=74.81 E-value=1.6e+02 Score=33.63 Aligned_cols=166 Identities=22% Similarity=0.306 Sum_probs=84.7
Q ss_pred HHHHHHHHHhHHHHHHhhhhhcCCCCCccccchhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006200 411 KHFVDIIKSLESSIRENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIG 490 (657)
Q Consensus 411 ~~Fv~f~K~n~~~I~~ai~~~~~dP~~e~~~~~~~~~~~~~~~s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~ 490 (657)
..||+++..+...|-.-|- -+-.+. +++. ....-++.|.+.+..-.+.+|+-+.+..+|.-++.+..
T Consensus 358 qvfvDiinkLk~niEeLIe-----dKY~vi-----LEKn---d~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k 424 (527)
T PF15066_consen 358 QVFVDIINKLKENIEELIE-----DKYRVI-----LEKN---DIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIK 424 (527)
T ss_pred hHHHHHHHHHHHHHHHHHH-----hHhHhh-----hhhh---hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 3488888888777766552 221111 1211 12334556777777777778777777777777775555
Q ss_pred CCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHH
Q 006200 491 GDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLE 570 (657)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le 570 (657)
+.-. ..+++-+..++++=...++-+| ++.-+-+-+.|++++++.-+++|... ..++.-|-++..-.+
T Consensus 425 ~nyv---------~LQEry~~eiQqKnksvsqclE-mdk~LskKeeeverLQ~lkgelEkat---~SALdlLkrEKe~~E 491 (527)
T PF15066_consen 425 ANYV---------HLQERYMTEIQQKNKSVSQCLE-MDKTLSKKEEEVERLQQLKGELEKAT---TSALDLLKREKETRE 491 (527)
T ss_pred hhHH---------HHHHHHHHHHHHhhhHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 2110 1222222333333222233332 24444555677777777777777322 233333434444444
Q ss_pred HHHHHHHcCCCCCCcccHHHHHHHHHHHHHHHHHHhHhHHH
Q 006200 571 KEVKALKSGGSSVSSPDVEAIKAEAREEAQKESEAELNDLL 611 (657)
Q Consensus 571 ~e~~~lr~~~~~~~~~~l~~~~~~~~~e~~~~~~~e~~dLl 611 (657)
+|.-.|++ +.+. ++.++.++|..+++.++-|+
T Consensus 492 qefLslqe--------EfQk-~ekenl~ERqkLKs~leKLv 523 (527)
T PF15066_consen 492 QEFLSLQE--------EFQK-HEKENLEERQKLKSRLEKLV 523 (527)
T ss_pred HHHHHHHH--------HHHH-HHHhhHHHHHHHHHHHHHHH
Confidence 44444432 1221 12245556677777666554
No 209
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=74.56 E-value=71 Score=29.39 Aligned_cols=11 Identities=36% Similarity=0.395 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q 006200 476 LGRNATLAEEL 486 (657)
Q Consensus 476 ~~~~~~L~~~l 486 (657)
+.++++|...+
T Consensus 15 ~n~La~Le~sl 25 (107)
T PF09304_consen 15 QNRLASLERSL 25 (107)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34445555444
No 210
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=74.38 E-value=1e+02 Score=31.20 Aligned_cols=47 Identities=13% Similarity=0.235 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHH
Q 006200 526 ILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKE 572 (657)
Q Consensus 526 ~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e 572 (657)
.++.|...+.+++..++.--.++..+..++.+++.+|-.++..|..+
T Consensus 92 qlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Q 138 (193)
T PF14662_consen 92 QLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQ 138 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHH
Confidence 44555566666666666666666666666666666664444444443
No 211
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=74.31 E-value=1.5e+02 Score=32.95 Aligned_cols=31 Identities=13% Similarity=0.245 Sum_probs=13.0
Q ss_pred HHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 547 KMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 547 ~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
+.+...+.++..++++.+++.++.+++...+
T Consensus 284 ~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK 314 (359)
T PF10498_consen 284 EVQEKYKQASEGVSERTRELAEISEELEQVK 314 (359)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444443333
No 212
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=74.09 E-value=1.2e+02 Score=31.68 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006200 465 VEKQCSEIQKLLGRNATLAEEL 486 (657)
Q Consensus 465 i~~Q~~eiq~L~~~~~~L~~~l 486 (657)
+-+...+|++++..+..+..++
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i 43 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRI 43 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555544
No 213
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=73.73 E-value=81 Score=37.47 Aligned_cols=12 Identities=33% Similarity=0.343 Sum_probs=6.1
Q ss_pred HhHHHHHHHhhh
Q 006200 309 CTRGLAAVLLGE 320 (657)
Q Consensus 309 lVqGL~A~LLG~ 320 (657)
.|..-+.-|||+
T Consensus 170 ~l~~Ai~~LlGl 181 (650)
T TIGR03185 170 LLKEAIEVLLGL 181 (650)
T ss_pred HHHHHHHHHhCc
Confidence 344445555663
No 214
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=73.52 E-value=16 Score=41.51 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKME 549 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le 549 (657)
+.-+.+|-.++.+.++++..+..+++.+++|.+++++.-....
T Consensus 58 ~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id 100 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSID 100 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 4567777777777777777777777777777776655554444
No 215
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=73.26 E-value=67 Score=30.12 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006200 465 VEKQCSEIQKLLGRNATLAE 484 (657)
Q Consensus 465 i~~Q~~eiq~L~~~~~~L~~ 484 (657)
+..+-.+.|.|++++..+..
T Consensus 8 ~q~~l~q~QqLq~ql~~~~~ 27 (119)
T COG1382 8 VQAQLAQLQQLQQQLQKVIL 27 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666665555
No 216
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=73.24 E-value=1.2e+02 Score=31.53 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 458 VKRLKAFVEKQCSEIQKLLGRNATLAE 484 (657)
Q Consensus 458 v~~lk~~i~~Q~~eiq~L~~~~~~L~~ 484 (657)
+..+|..|..-..+.+.++.++..+-+
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666666666666666655544
No 217
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=73.09 E-value=1.1 Score=53.60 Aligned_cols=51 Identities=22% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcC
Q 006200 528 KEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSG 579 (657)
Q Consensus 528 ~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~ 579 (657)
+.++..+++++..+..++.-.. .+..--..+..||.+|.++..|++.||+.
T Consensus 229 e~~i~~Le~el~~~~~~~~i~k-~l~~ql~~i~~LE~en~~l~~Elk~Lr~~ 279 (722)
T PF05557_consen 229 EQKIKELEAELKDQESDAEINK-ELKEQLAHIRELEKENRRLREELKHLRQS 279 (722)
T ss_dssp ----------------------------------------------------
T ss_pred HHHHHHHHHHHHhHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555442111 12222235677888888888888888863
No 218
>PRK09343 prefoldin subunit beta; Provisional
Probab=73.02 E-value=81 Score=29.36 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 517 LHEASQRLEILKEEKAQIESDSSMYRNLAAKME 549 (657)
Q Consensus 517 L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le 549 (657)
++.+++.+..+..++..++++.........+++
T Consensus 16 ~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~ 48 (121)
T PRK09343 16 LQQLQQQLERLLQQKSQIDLELREINKALEELE 48 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444333333333
No 219
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=72.82 E-value=99 Score=32.92 Aligned_cols=61 Identities=21% Similarity=0.369 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhH-------HHHhHHHHHhHh
Q 006200 508 VQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLS-------DAYNSLEQTNFH 568 (657)
Q Consensus 508 ~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls-------~~~~~Le~~~~~ 568 (657)
.-+..++.+++..++.+..+..+-+.+++.++.-+.-..+.+.+|..|+ +.|+.||.+++.
T Consensus 169 ~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~ 236 (267)
T PF10234_consen 169 EAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQK 236 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 3344455555555555555555556666666666666666666666665 445555554443
No 220
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=72.70 E-value=2.4e+02 Score=35.98 Aligned_cols=96 Identities=16% Similarity=0.190 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhHHH-------HhHHHHHhHhHHHHHHHHHcCCCCCCcccHHHHHHHHHHHHHHHH
Q 006200 531 KAQIESDSSMYRNLAAKMESDLKSLSDA-------YNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAEAREEAQKES 603 (657)
Q Consensus 531 ~~~~eae~~~~~~~a~~le~~l~~ls~~-------~~~Le~~~~~le~e~~~lr~~~~~~~~~~l~~~~~~~~~e~~~~~ 603 (657)
+..+++|...++.....+|.++.+.+.. ..-+..+..+++++++.+++. +..-|-++.+...+++
T Consensus 175 ~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~--------in~kR~~~se~~~~~~ 246 (1109)
T PRK10929 175 LTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQ--------LNSQRQREAERALEST 246 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 4555666666666666666555544422 112234555566666666642 2222223333344444
Q ss_pred HHhHh---HHHHHhhhhhhhHHHHHHHHHHcCch
Q 006200 604 EAELN---DLLVCLGQEQSKVEKLSARLLELGED 634 (657)
Q Consensus 604 ~~e~~---dLl~ll~d~~~K~~~~k~~L~~lg~~ 634 (657)
+...+ +.=-.+.++-+.+++|-.+|.+.-..
T Consensus 247 ~~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~ 280 (1109)
T PRK10929 247 ELLAEQSGDLPKSIVAQFKINRELSQALNQQAQR 280 (1109)
T ss_pred HHhHHhhccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 43211 12222666667788888877655443
No 221
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=72.31 E-value=1.2e+02 Score=31.19 Aligned_cols=110 Identities=16% Similarity=0.221 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHH---------HH
Q 006200 459 KRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEIL---------KE 529 (657)
Q Consensus 459 ~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l---------~~ 529 (657)
..|...|.....++++++.++.....++...+... + .-+.++.+.++.+++....+..+ .+
T Consensus 81 ~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p---~-------~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a 150 (240)
T PF12795_consen 81 EELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRP---E-------RAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEA 150 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccH---H-------HHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHH
Confidence 45667777777778777777777777765444100 0 11233333444444444433221 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhH-------HHHhHHHHHhHhHHHHHHHHHc
Q 006200 530 EKAQIESDSSMYRNLAAKMESDLKSLS-------DAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 530 e~~~~eae~~~~~~~a~~le~~l~~ls-------~~~~~Le~~~~~le~e~~~lr~ 578 (657)
.+..+++|...++.....++..+.+.+ .+..-+..++.+++.++..|++
T Consensus 151 ~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~ 206 (240)
T PF12795_consen 151 QRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQN 206 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666665554433 2223334555556666666653
No 222
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=72.27 E-value=1e+02 Score=31.46 Aligned_cols=19 Identities=21% Similarity=0.172 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006200 468 QCSEIQKLLGRNATLAEEL 486 (657)
Q Consensus 468 Q~~eiq~L~~~~~~L~~~l 486 (657)
+.-+|.=|++++.....++
T Consensus 8 k~GEIsLLKqQLke~q~E~ 26 (202)
T PF06818_consen 8 KSGEISLLKQQLKESQAEV 26 (202)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 3445555555555554443
No 223
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=72.24 E-value=1.7e+02 Score=32.76 Aligned_cols=12 Identities=17% Similarity=0.257 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 006200 509 QVETLRKDLHEA 520 (657)
Q Consensus 509 q~e~L~~~L~~~ 520 (657)
++.+++.++.++
T Consensus 262 ~l~~le~~l~~l 273 (444)
T TIGR03017 262 DIARAESKLAEL 273 (444)
T ss_pred HHHHHHHHHHHH
Confidence 333344444433
No 224
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=72.19 E-value=61 Score=28.20 Aligned_cols=51 Identities=10% Similarity=0.195 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHH
Q 006200 509 QVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAY 559 (657)
Q Consensus 509 q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~ 559 (657)
+.+.+-+++...+...+.++.....--+|+...++..-+||..-.+...+|
T Consensus 12 Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~Y 62 (79)
T PF08581_consen 12 EFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQY 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445555555556667777777777776655555554
No 225
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.12 E-value=2e+02 Score=36.42 Aligned_cols=233 Identities=20% Similarity=0.284 Sum_probs=117.6
Q ss_pred HHHHHHhccCCCchHhHHHHHHHHHHHHhcCh----------------------------hhHHHhhccccCCC--C-cc
Q 006200 67 NLLMLAVESQWAPVAVRCAALRCISDIIAAHP----------------------------KNRDVLASKVLGEE--P-QV 115 (657)
Q Consensus 67 ~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~----------------------------~nQ~~fa~~~vp~~--p-~~ 115 (657)
.++.++. +.-..||+.|++.++.++.|.+ .|+.-|-.+.+-.+ + =|
T Consensus 142 ~il~~~~---h~~pkvRk~a~~~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p 218 (1176)
T KOG1248|consen 142 GILAFAA---HKKPKVRKAAQRGIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFP 218 (1176)
T ss_pred HHHHHHh---cCchHHHHHHHHHHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCC
Confidence 4444444 3477899999999999998543 12222222211100 0 02
Q ss_pred chHHHHHHHHHhccC---chhHHhHHHHHHHHhhcCChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCC
Q 006200 116 EAALNSILRIILRTS---SMQEFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGE 192 (657)
Q Consensus 116 ~pal~~LL~~~L~~~---~~~~r~AA~~cf~ayl~~N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d 192 (657)
+|.+..|-..+|+.- ++-..+++..||.+.|.+++. ++ +.+.-..|+.+|+.+.
T Consensus 219 ~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~-------~l----------------~a~~~a~lL~al~~l~ 275 (1176)
T KOG1248|consen 219 RPLIKSLCEVLLNITTESPVLVLLEVLQCLHSLFKKHPT-------AL----------------AAELNARLLTALMTLS 275 (1176)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCC-------cc----------------hHHHHHHHHHHHHHhC
Confidence 445555544444322 234568888999988888865 11 1334455777777765
Q ss_pred C-Ccc--hhHHHHHHHHHHHHhcC---CHHHHHHHhccc---cccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcch
Q 006200 193 S-DGD--LEVCCRAASVLSHILMD---NLQCKERVLRIE---LEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAG 263 (657)
Q Consensus 193 ~-~~d--py~~wfAa~iL~hll~d---n~~~Ke~al~V~---l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~ 263 (657)
| ..| +...|.+++.=.|.... ...++..+.++- .... ++.-+++++.+.+++.-- .+ .+..
T Consensus 276 ps~~D~~~t~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t~~---~s~~~e~~q~a~q~l~~i--l~-~sv~---- 345 (1176)
T KOG1248|consen 276 PSENDDLLTVAWLKVLNEAHDILATLQEEKALQALPRLFSLFFTIL---ESLIEELVQAASQSLKEI--LK-ESVT---- 345 (1176)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHHHH---hcccHHHHHHHHHHHHHH--hc-ccCc----
Confidence 5 233 36778887766666543 223333322221 0011 123345555555544410 00 0100
Q ss_pred hHHHHHHHHHHHHhhcChHHHHHhhcCCCh--HHHHHHHhh---CC----CCchHhHHHHHHHhhhhH-hhcCCCCCCCC
Q 006200 264 YIQLIILKLLVTWLADCPNAVHCFLDSRPH--LTYLLELVS---NP----SATVCTRGLAAVLLGECV-IYNKSSDTGRD 333 (657)
Q Consensus 264 ~~~~gyL~LL~~WL~e~p~AV~~FL~~~s~--l~~L~~~i~---~~----~~~~lVqGL~A~LLG~Cv-~Yn~ss~~~~d 333 (657)
|--- -|..+|..||+-+.+ -.+.++.++ +. ++.. |.=.|-|+|. -|.... ..
T Consensus 346 -----~~~~------~c~~~~~~~l~~kf~~~~~~ilqi~s~~fek~G~~s~~~----l~~~L~~l~~lr~~~d~---~~ 407 (1176)
T KOG1248|consen 346 -----VIDA------LCSKQLHSLLDYKFHAVWRFILQILSALFEKCGELSGPE----LTKTLEGLCDLRASPDF---FH 407 (1176)
T ss_pred -----ccHH------HHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhhhcCHH----HHHHHHHHHHhhcCCCC---cc
Confidence 0000 133377788877754 233443332 11 2222 3334556665 444433 45
Q ss_pred hhHHHHHHH---hhcchhhHHHH
Q 006200 334 AFSIVDSIS---QKVGLTSYFLK 353 (657)
Q Consensus 334 s~~l~~lI~---~RiG~d~y~~k 353 (657)
+..|.+-|- +-||++.+..-
T Consensus 408 ~~~ld~~IGSAV~AmGPe~vL~~ 430 (1176)
T KOG1248|consen 408 KLQLDQCIGSAVRAMGPERVLTI 430 (1176)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHH
Confidence 556777665 57899988654
No 226
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=72.07 E-value=1.2e+02 Score=31.42 Aligned_cols=149 Identities=18% Similarity=0.230 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHH-HHHH---HH-HHHHHHHHH
Q 006200 466 EKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLE-ILKE---EK-AQIESDSSM 540 (657)
Q Consensus 466 ~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e-~l~~---e~-~~~eae~~~ 540 (657)
+.-++.|.+.+..+..+...+++.-+ .+ ...+.+++.++...+......+ +|.. .+ +.+=.+..+
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a------~~----k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~ 96 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIA------RQ----KQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQS 96 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34456777777777777775443321 00 1223333333333332222111 1111 11 333445556
Q ss_pred HHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcCCCCCCcccHHHHHHH-HHHHHHHHHHH-----hHhHHHHHh
Q 006200 541 YRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAE-AREEAQKESEA-----ELNDLLVCL 614 (657)
Q Consensus 541 ~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~~~~~~~~~l~~~~~~-~~~e~~~~~~~-----e~~dLl~ll 614 (657)
|.+.+..++..+..+......|+..+.+|+..+.+++.+ .+..++. ...++...+.+ .-++=+-.|
T Consensus 97 le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~--------~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~f 168 (225)
T COG1842 97 LEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAK--------KEALKARKAAAKAQEKVNRSLGGGSSSSAMAAF 168 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHH
Confidence 666667777777777777777777777777777777642 2222222 12222222222 123667788
Q ss_pred hhhhhhHHHHHHHHHHcC
Q 006200 615 GQEQSKVEKLSARLLELG 632 (657)
Q Consensus 615 ~d~~~K~~~~k~~L~~lg 632 (657)
...++|+.....+..-.+
T Consensus 169 er~e~kiee~ea~a~~~~ 186 (225)
T COG1842 169 ERMEEKIEEREARAEAAA 186 (225)
T ss_pred HHHHHHHHHHHHHHHHhH
Confidence 888899988888875544
No 227
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=71.83 E-value=32 Score=28.87 Aligned_cols=30 Identities=20% Similarity=0.281 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 511 ETLRKDLHEASQRLEILKEEKAQIESDSSM 540 (657)
Q Consensus 511 e~L~~~L~~~~~~~e~l~~e~~~~eae~~~ 540 (657)
.+|..+++++=..++.|+.|++.+..+...
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~ 32 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKT 32 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666665554
No 228
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=71.80 E-value=63 Score=27.57 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhH
Q 006200 511 ETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLS 556 (657)
Q Consensus 511 e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls 556 (657)
..|+.+.++++.....++.++..++.+...++.--+.|+..+.++=
T Consensus 21 ~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL 66 (72)
T PF06005_consen 21 ALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLL 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555555555555555555556665555543
No 229
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=71.72 E-value=44 Score=28.26 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 508 VQVETLRKDLHEASQRLEILKEEKAQIES 536 (657)
Q Consensus 508 ~q~e~L~~~L~~~~~~~e~l~~e~~~~ea 536 (657)
.++.+|+..|+.+...++....++..+..
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ 33 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRR 33 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555565555555544444433333
No 230
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=71.62 E-value=1.7e+02 Score=37.19 Aligned_cols=19 Identities=26% Similarity=0.258 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhhHhccCC
Q 006200 23 KTINLLSALETINLLIVRG 41 (657)
Q Consensus 23 k~~N~~~~L~ivrllV~~g 41 (657)
-..|+-++|+++-.|+...
T Consensus 24 ~~~~~e~LLD~l~~L~~ec 42 (1317)
T KOG0612|consen 24 SAINVETLLDTLIALYDEC 42 (1317)
T ss_pred ccccHHHHHHHHHHHHHHh
Confidence 3456777777777777653
No 231
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=71.59 E-value=2e+02 Score=33.21 Aligned_cols=15 Identities=13% Similarity=0.237 Sum_probs=7.6
Q ss_pred HHHHHHHHhHhHHHH
Q 006200 598 EAQKESEAELNDLLV 612 (657)
Q Consensus 598 e~~~~~~~e~~dLl~ 612 (657)
+++..++.++..|..
T Consensus 165 ~~~~~L~~qi~~L~~ 179 (475)
T PRK10361 165 QERHTLAHEIRNLQQ 179 (475)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555543
No 232
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=71.58 E-value=2e+02 Score=35.20 Aligned_cols=107 Identities=18% Similarity=0.166 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCcchhhhhhccccHHHHHHHHHHHHHHHH-HHHHHHHHH-----HH
Q 006200 461 LKAFVEKQCSEIQKLLGRNATLAEELAKIG-GDGASQSEQRASGALDRVQVETLRKDLHEASQ-RLEILKEEK-----AQ 533 (657)
Q Consensus 461 lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~-~~e~l~~e~-----~~ 533 (657)
-+.+|+++|++|.+|+..+.+---...... +...+.+-.+.-++....+++.+..++.+..+ ..+.++++. ..
T Consensus 920 sicl~eeKDqei~EleailekQNca~eeakqn~eis~Ed~kkLhaE~daeLe~~~ael~eleqk~le~~eDea~aRh~ke 999 (1424)
T KOG4572|consen 920 SICLIEEKDQEIEELEAILEKQNCAHEEAKQNDEISEEDKKKLHAEIDAELEKEFAELIELEQKALECKEDEAFARHEKE 999 (1424)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhhhhHHHHhhcCcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 346788899999888766443222111111 11122222333334446666777777666543 344444433 33
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhH
Q 006200 534 IESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNF 567 (657)
Q Consensus 534 ~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~ 567 (657)
++-++.+.+...+.....+......+.++++++.
T Consensus 1000 fE~~mrdhrselEe~kKe~eaiineiee~eaeIi 1033 (1424)
T KOG4572|consen 1000 FEIEMRDHRSELEEKKKELEAIINEIEELEAEII 1033 (1424)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444333333333333344444554444
No 233
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=71.56 E-value=1.2e+02 Score=30.56 Aligned_cols=65 Identities=15% Similarity=0.226 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 513 LRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 513 L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
++..++.+++.++.++.++..++.+++..+..-..-+.+ ..+-..+++|+.++.++.+|++..+.
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR-~~~l~~l~~l~~~~~~l~~el~~~~~ 131 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEER-EELLEELEELKKELKELKKELEKYSE 131 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444445555555555443322222222 22334566777777777777776654
No 234
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=71.29 E-value=1.9e+02 Score=32.83 Aligned_cols=39 Identities=13% Similarity=0.213 Sum_probs=24.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 006200 505 LDRVQVETLRKDLHEASQRLEILKE----EKAQIESDSSMYRN 543 (657)
Q Consensus 505 ~~~~q~e~L~~~L~~~~~~~e~l~~----e~~~~eae~~~~~~ 543 (657)
....++..|+++|...++.+..... -...+.+++..++.
T Consensus 152 ~~~~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~ 194 (426)
T smart00806 152 EQRAELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKS 194 (426)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4468899999999998887654322 22444444444444
No 235
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=71.12 E-value=36 Score=30.52 Aligned_cols=65 Identities=23% Similarity=0.411 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHhHHHHhHHHHHhHhHHHHH
Q 006200 509 QVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNL---AAKMESDLKSLSDAYNSLEQTNFHLEKEV 573 (657)
Q Consensus 509 q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~---a~~le~~l~~ls~~~~~Le~~~~~le~e~ 573 (657)
++-.|..+..++....+.+++++..+-.++...+.. ++.+-.+.+.++..+..+|.+...+++++
T Consensus 30 ~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l 97 (108)
T PF02403_consen 30 EIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEEL 97 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444555555554444444443332 33344344444444444444444444433
No 236
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=71.09 E-value=1.6e+02 Score=34.51 Aligned_cols=153 Identities=14% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhcccc----------------HHHHHHHHHHHHHHHHHHHHHHHHH-
Q 006200 469 CSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALD----------------RVQVETLRKDLHEASQRLEILKEEK- 531 (657)
Q Consensus 469 ~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~----------------~~q~e~L~~~L~~~~~~~e~l~~e~- 531 (657)
+++|+.++.++......|.+..=+.+..........-. ......+...+.++......|..|.
T Consensus 251 ~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~ 330 (560)
T PF06160_consen 251 EEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELE 330 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----------------HHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcCCCCCCcccHHHHHHHH
Q 006200 532 ----------------AQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAEA 595 (657)
Q Consensus 532 ----------------~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~~~~~~~~~l~~~~~~~ 595 (657)
+.++.+++.+..........+..=...|+.+......+.+.+.+..+ .-..
T Consensus 331 ~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~-------------~q~~ 397 (560)
T PF06160_consen 331 RVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEE-------------EQEE 397 (560)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHH-------------HHHH
Q ss_pred HHHHHHHHHHhHhHHHHHhhhhhhhHHHHHHHHHHcCch
Q 006200 596 REEAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGED 634 (657)
Q Consensus 596 ~~e~~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~lg~~ 634 (657)
-.+.+..++++-.+-=--+.....++...|+++....++
T Consensus 398 ~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLP 436 (560)
T PF06160_consen 398 INESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLP 436 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
No 237
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=70.96 E-value=51 Score=38.66 Aligned_cols=47 Identities=19% Similarity=0.358 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHH
Q 006200 511 ETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSD 557 (657)
Q Consensus 511 e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~ 557 (657)
......+.......+.|+.|+..+++++..++..+++|++.|.++..
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r 464 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRR 464 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555666666666666666666666655555543
No 238
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=70.81 E-value=1.4 Score=53.98 Aligned_cols=89 Identities=21% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-----cchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 460 RLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGA-----SQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQI 534 (657)
Q Consensus 460 ~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~-----~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~ 534 (657)
.++..+.+....+.++......|..++....+... .....+.. .....|++.++++|++.++....|...+..+
T Consensus 191 El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k-~~L~~qLeelk~~leeEtr~k~~L~~~l~~l 269 (859)
T PF01576_consen 191 ELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREK-SSLESQLEELKRQLEEETRAKQALEKQLRQL 269 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHhHhhhhhhhHHHHHHH
Confidence 34444555555555555554444444433221110 01111211 2345677777777777777666666666666
Q ss_pred HHHHHHHHHHHHHHH
Q 006200 535 ESDSSMYRNLAAKME 549 (657)
Q Consensus 535 eae~~~~~~~a~~le 549 (657)
+.+++.++.....-+
T Consensus 270 e~e~~~L~eqleeE~ 284 (859)
T PF01576_consen 270 EHELEQLREQLEEEE 284 (859)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHhhhh
Confidence 666666555544333
No 239
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=70.77 E-value=1.5e+02 Score=31.54 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=14.6
Q ss_pred HHHHHHHHHhHhHHHHHhhh
Q 006200 597 EEAQKESEAELNDLLVCLGQ 616 (657)
Q Consensus 597 ~e~~~~~~~e~~dLl~ll~d 616 (657)
..++...++.++.||..|++
T Consensus 160 ~~K~~~~k~~~e~Ll~~Lge 179 (268)
T PF11802_consen 160 KTKIEKIKEYKEKLLSFLGE 179 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34567777788888888884
No 240
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=70.75 E-value=1.6e+02 Score=31.80 Aligned_cols=70 Identities=16% Similarity=0.294 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 508 VQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 508 ~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
.+...++..+.++.........+...+-.++..++.-|..|...+-.++.+..++..+...+.+++..+.
T Consensus 172 ~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~ 241 (294)
T COG1340 172 KKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELE 241 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555566666777777777777777777777777666666655555555544443
No 241
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=70.70 E-value=1.3e+02 Score=30.61 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 461 LKAFVEKQCSEIQKLLGRNATLAE 484 (657)
Q Consensus 461 lk~~i~~Q~~eiq~L~~~~~~L~~ 484 (657)
|-+.....=.-|..|+.+++.+..
T Consensus 18 YndIT~~NL~lIksLKeei~emkk 41 (201)
T PF13851_consen 18 YNDITLNNLELIKSLKEEIAEMKK 41 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555556666666666555
No 242
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=70.60 E-value=73 Score=37.11 Aligned_cols=15 Identities=40% Similarity=0.563 Sum_probs=11.5
Q ss_pred HHHHHHHHHHcCchh
Q 006200 621 VEKLSARLLELGEDV 635 (657)
Q Consensus 621 ~~~~k~~L~~lg~~v 635 (657)
+.+||.||-+|-+.|
T Consensus 408 RNqYKErLMELqEav 422 (832)
T KOG2077|consen 408 RNQYKERLMELQEAV 422 (832)
T ss_pred HhHHHHHHHHHHHHH
Confidence 678999998886544
No 243
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=70.42 E-value=1.5e+02 Score=31.34 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 513 LRKDLHEASQRLEILKEEKAQIESDSSMYR 542 (657)
Q Consensus 513 L~~~L~~~~~~~e~l~~e~~~~eae~~~~~ 542 (657)
|..||.++..++..+..++.++..|.+..|
T Consensus 50 lesqL~q~etrnrdl~t~nqrl~~E~e~~K 79 (333)
T KOG1853|consen 50 LESQLDQLETRNRDLETRNQRLTTEQERNK 79 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444454444444444444444444444433
No 244
>PRK14143 heat shock protein GrpE; Provisional
Probab=69.96 E-value=79 Score=33.08 Aligned_cols=49 Identities=22% Similarity=0.394 Sum_probs=40.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006200 506 DRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKS 554 (657)
Q Consensus 506 ~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ 554 (657)
...++..|+.+++.++++++.+++...++.|+.++||+...+-..++.+
T Consensus 65 ~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~ 113 (238)
T PRK14143 65 NAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRL 113 (238)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888999999999999999999999999999988876655443
No 245
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=69.93 E-value=1.3e+02 Score=30.62 Aligned_cols=22 Identities=5% Similarity=0.158 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006200 461 LKAFVEKQCSEIQKLLGRNATL 482 (657)
Q Consensus 461 lk~~i~~Q~~eiq~L~~~~~~L 482 (657)
++..|++-...|.+++..++..
T Consensus 29 l~q~irem~~~l~~ar~~lA~~ 50 (219)
T TIGR02977 29 IRLIIQEMEDTLVEVRTTSART 50 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555554444333
No 246
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=69.78 E-value=90 Score=32.82 Aligned_cols=39 Identities=13% Similarity=0.287 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 006200 517 LHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSL 555 (657)
Q Consensus 517 L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~l 555 (657)
|--.+++.+.++..+.++|.|+...++.++.++.++.+|
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L 119 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESL 119 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555556566666666666555555555544443
No 247
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=69.74 E-value=79 Score=35.50 Aligned_cols=41 Identities=10% Similarity=0.076 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 509 QVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKME 549 (657)
Q Consensus 509 q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le 549 (657)
+...+..|+.....+.+.+++.....|.++.++|+-...+.
T Consensus 28 ~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~ 68 (459)
T KOG0288|consen 28 AQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLN 68 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444555444444444333
No 248
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=69.32 E-value=1.8e+02 Score=36.44 Aligned_cols=107 Identities=21% Similarity=0.201 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 462 KAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMY 541 (657)
Q Consensus 462 k~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~ 541 (657)
-++|+++..+|+.++.++..+++.+.... . .......+.+.++.+|+...+.++.++.+.+++++.+...
T Consensus 447 ~~~ieele~el~~~~~~l~~~~e~~~~~~-------~---~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~ 516 (1041)
T KOG0243|consen 447 AEQIEELEEELENLEKQLKDLTELYMNQL-------E---IKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEE 516 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHH-------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666542111 0 0123345666677777777777776677777776666555
Q ss_pred HHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 542 RNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 542 ~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
-.-+++++..-+++.++-..|...+......+..+-+
T Consensus 517 e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~ 553 (1041)
T KOG0243|consen 517 EEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFE 553 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666655555555555555555544
No 249
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=69.03 E-value=3.1e+02 Score=34.42 Aligned_cols=30 Identities=30% Similarity=0.327 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006200 461 LKAFVEKQCSEIQKLLGRNATLAEELAKIG 490 (657)
Q Consensus 461 lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~ 490 (657)
||+.+++-.+.-+-|.+.-..|++||.+..
T Consensus 262 ykdRveelkedN~vLleekeMLeeQLq~lr 291 (1195)
T KOG4643|consen 262 YKDRVEELKEDNRVLLEEKEMLEEQLQKLR 291 (1195)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 888888888877778888888888885443
No 250
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=69.00 E-value=1.8e+02 Score=31.77 Aligned_cols=117 Identities=25% Similarity=0.326 Sum_probs=67.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHH
Q 006200 505 LDRVQVETLRKDLHEASQRLEILKEEK-------------------AQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQT 565 (657)
Q Consensus 505 ~~~~q~e~L~~~L~~~~~~~e~l~~e~-------------------~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~ 565 (657)
....+++.|++.|.+++-.+..|+..+ ..+=.+++.++.....||.|++.+.+...++..+
T Consensus 83 ~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~E 162 (319)
T PF09789_consen 83 KLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTE 162 (319)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777665544443332 4444556667777777777777777766666433
Q ss_pred hH-------hHHHHHHHHHcCCCCCCcccHHHHHHHH--HHHHHHHHHHhHhHHHHHhhhhhhhHHHHHHHHH
Q 006200 566 NF-------HLEKEVKALKSGGSSVSSPDVEAIKAEA--REEAQKESEAELNDLLVCLGQEQSKVEKLSARLL 629 (657)
Q Consensus 566 ~~-------~le~e~~~lr~~~~~~~~~~l~~~~~~~--~~e~~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~ 629 (657)
.- ||-.|+.-+=. +....--|+++...|- -.|.++.++.|.+.+ -..+.|||..|.
T Consensus 163 RD~yk~K~~RLN~ELn~~L~-g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~-------k~~i~KYK~~le 227 (319)
T PF09789_consen 163 RDAYKCKAHRLNHELNYILN-GDENRIVDIDALIMENRYLKERLKQLQEEKELL-------KQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 32 34333322221 2211113778776552 334566677776654 357889998775
No 251
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=68.64 E-value=19 Score=32.76 Aligned_cols=57 Identities=12% Similarity=0.127 Sum_probs=48.4
Q ss_pred hhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCC
Q 006200 54 TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGE 111 (657)
Q Consensus 54 ~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~ 111 (657)
.+|..+.+.|-+..+|.--..-. --+-+|--|+.|+=.+..||+.||+..+++....
T Consensus 19 ~~Qd~vr~~~Gi~liL~~c~iD~-~nP~irEwai~aiRnL~e~n~eNQ~~I~~L~~~~ 75 (102)
T PF09759_consen 19 EVQDLVRELGGIPLILSCCNIDD-HNPFIREWAIFAIRNLCEGNPENQEFIAQLEPQG 75 (102)
T ss_pred HHHHHHHHcCChHHHHHhcCCCc-ccHHHHHHHHHHHHHHHhCCHHHHHHHHhccccC
Confidence 79999999999988888755333 3455999999999999999999999999998653
No 252
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=68.49 E-value=2.2e+02 Score=32.63 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 459 KRLKAFVEKQCSEIQKLLGRNATLAEE 485 (657)
Q Consensus 459 ~~lk~~i~~Q~~eiq~L~~~~~~L~~~ 485 (657)
..+-.+...--.+|..|+.+|..|-++
T Consensus 260 ~~f~~~~~~i~~~i~~lk~~n~~l~e~ 286 (622)
T COG5185 260 LGFEKFVHIINTDIANLKTQNDNLYEK 286 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555555553
No 253
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=68.40 E-value=93 Score=36.59 Aligned_cols=159 Identities=20% Similarity=0.159 Sum_probs=79.4
Q ss_pred CCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchhHHhHHHHHHHHhhcCChh-hHH
Q 006200 76 QWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAADRIFNSFCEKNPD-GQA 154 (657)
Q Consensus 76 ~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~~r~AA~~cf~ayl~~N~~-~q~ 154 (657)
.+.|..||+.||+++--+|-|+- .|++..+|+..+-..++..+.||+-+---.+-.|.. ++.
T Consensus 112 ~g~~~~~kp~AiRsL~~Vid~~t-----------------v~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~r 174 (898)
T COG5240 112 GGVPDDVKPMAIRSLFSVIDGET-----------------VYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKR 174 (898)
T ss_pred cCCccccccHHHHHHHHhcCcch-----------------hhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHH
Confidence 46799999999999999997753 344555655554444444443332221111222211 112
Q ss_pred HHHhh------hcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhc-CCHHHHHHHhccccc
Q 006200 155 MLTST------LIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILM-DNLQCKERVLRIELE 227 (657)
Q Consensus 155 ~L~~t------l~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~-dn~~~Ke~al~V~l~ 227 (657)
++..| +...|+. +|=..|.|+++|...|+|--+|..+=+ |....-.++.-. .
T Consensus 175 w~ne~qeav~~l~q~p~~-------------------~~n~gy~Pn~~~isqYHalGlLyq~kr~dkma~lklv~hf--~ 233 (898)
T COG5240 175 WLNETQEAVLDLKQFPNQ-------------------HGNEGYEPNGNPISQYHALGLLYQSKRTDKMAQLKLVEHF--R 233 (898)
T ss_pred HHHHHHHHHhhHhhCcCc-------------------cCCcccCCCCChHHHHHHHHHHHHHhcccHHHHHHHHHHh--h
Confidence 33222 2222221 111256778888777775444443333 111111111111 1
Q ss_pred cCCC--CCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhhcChHHH
Q 006200 228 APMP--SLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAV 284 (657)
Q Consensus 228 ~~~~--~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~e~p~AV 284 (657)
++.+ -.-+++.++..+...+-. + .+.+.-+--+|..||.+-.+.|
T Consensus 234 ~n~smknq~a~V~lvr~~~~ll~~-----n-------~q~~~q~rpfL~~wls~k~emV 280 (898)
T COG5240 234 GNASMKNQLAGVLLVRATVELLKE-----N-------SQALLQLRPFLNSWLSDKFEMV 280 (898)
T ss_pred cccccccchhheehHHHHHHHHHh-----C-------hHHHHHHHHHHHHHhcCcchhh
Confidence 1110 012466777777666541 1 1333446778999999877666
No 254
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=68.35 E-value=1.3e+02 Score=33.39 Aligned_cols=12 Identities=25% Similarity=0.628 Sum_probs=6.1
Q ss_pred HHHHHHHHHHhh
Q 006200 267 LIILKLLVTWLA 278 (657)
Q Consensus 267 ~gyL~LL~~WL~ 278 (657)
+.|..-||.||.
T Consensus 42 F~~F~~L~~WL~ 53 (359)
T PF10498_consen 42 FYYFTSLCAWLI 53 (359)
T ss_pred HHHHHHHHHHHH
Confidence 345555555554
No 255
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=67.89 E-value=84 Score=30.59 Aligned_cols=34 Identities=24% Similarity=0.210 Sum_probs=29.1
Q ss_pred CCChhHHHHHHHhhcchhhHHHHHHHHhcccccc
Q 006200 331 GRDAFSIVDSISQKVGLTSYFLKFDEMQKSFLFS 364 (657)
Q Consensus 331 ~~ds~~l~~lI~~RiG~d~y~~kl~~lr~~~~f~ 364 (657)
+++..++.+-+.++||...-.-.|..|.+.-...
T Consensus 16 Pys~~di~~nL~~~~~K~~v~k~Ld~L~~~g~i~ 49 (169)
T PF07106_consen 16 PYSAQDIFDNLHNKVGKTAVQKALDSLVEEGKIV 49 (169)
T ss_pred CCcHHHHHHHHHhhccHHHHHHHHHHHHhCCCee
Confidence 5788899999999999999999999998876554
No 256
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=67.84 E-value=2.6e+02 Score=33.12 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=12.0
Q ss_pred HHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 552 LKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 552 l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
|..++..+-.||+++..|..+++...
T Consensus 244 Le~aq~ri~~lE~e~e~L~~ql~~~N 269 (629)
T KOG0963|consen 244 LEDAQQRIVFLEREVEQLREQLAKAN 269 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33334444444555555555544443
No 257
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=67.62 E-value=34 Score=39.68 Aligned_cols=55 Identities=9% Similarity=0.154 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 524 LEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 524 ~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
+.+++..++++.+|++.+...+++++..+-+.+..+..|+.++.+.+-..+++++
T Consensus 95 L~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 95 LTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3334444444555555555555555544444444444444444444444555554
No 258
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=67.14 E-value=1.8e+02 Score=33.02 Aligned_cols=14 Identities=21% Similarity=0.107 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHh
Q 006200 475 LLGRNATLAEELAK 488 (657)
Q Consensus 475 L~~~~~~L~~~l~~ 488 (657)
.++.+..|+++|.+
T Consensus 257 aEqsl~dlQk~Lek 270 (575)
T KOG4403|consen 257 AEQSLEDLQKRLEK 270 (575)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555543
No 259
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=66.98 E-value=1.5e+02 Score=30.18 Aligned_cols=160 Identities=13% Similarity=0.173 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHH-HHH---HHH-
Q 006200 457 YVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLE-ILK---EEK- 531 (657)
Q Consensus 457 ~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e-~l~---~e~- 531 (657)
+++...+=...-+.-|++++..+......+++.-. ..-..+.++++++...+.-..+.. +|+ ..+
T Consensus 18 ~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a----------~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLA 87 (219)
T TIGR02977 18 LLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIA----------DKKELERRVSRLEAQVADWQEKAELALSKGREDLA 87 (219)
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 44444454566677777777777766665433321 000112333333333332222211 111 111
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcCCCCCCcccHHHHHHH---HHHHHHHH-HHHhH
Q 006200 532 AQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAE---AREEAQKE-SEAEL 607 (657)
Q Consensus 532 ~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~~~~~~~~~l~~~~~~---~~~e~~~~-~~~e~ 607 (657)
...=.+...+...+..++..+..+...+..|+..+..|+.++..++.. .+.-.++.. ........ .....
T Consensus 88 r~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k------~~~l~ar~~~A~a~~~~~~~~~~~~~ 161 (219)
T TIGR02977 88 RAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARAR------QKALAIRHQAASSRLDVRRQLDSGRS 161 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 222235566667777777777777777777777777777777666632 111111111 11111111 12256
Q ss_pred hHHHHHhhhhhhhHHHHHHHHHHcC
Q 006200 608 NDLLVCLGQEQSKVEKLSARLLELG 632 (657)
Q Consensus 608 ~dLl~ll~d~~~K~~~~k~~L~~lg 632 (657)
++-+--|...++|+.+..++-.-.+
T Consensus 162 ~~a~~~fer~e~ki~~~ea~aea~~ 186 (219)
T TIGR02977 162 DEAMARFEQYERRVDELEAQAESYD 186 (219)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7788888888999888877655444
No 260
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=66.94 E-value=1.3e+02 Score=29.22 Aligned_cols=39 Identities=18% Similarity=0.288 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHH
Q 006200 534 IESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKE 572 (657)
Q Consensus 534 ~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e 572 (657)
++...+.+.+...+|+..+..|...+..+++++..+..+
T Consensus 99 l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~ 137 (145)
T COG1730 99 LKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQK 137 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555666666666666666666665555443
No 261
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=66.90 E-value=1.4e+02 Score=29.54 Aligned_cols=16 Identities=25% Similarity=0.491 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 006200 507 RVQVETLRKDLHEASQ 522 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~ 522 (657)
+.+.+.|+++++...+
T Consensus 79 r~~~e~L~~eie~l~~ 94 (177)
T PF07798_consen 79 RSENEKLQREIEKLRQ 94 (177)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 262
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=66.73 E-value=1.7e+02 Score=30.60 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=10.7
Q ss_pred hHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 551 DLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 551 ~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
.+..+...+..|+.+..+.+.|...++
T Consensus 83 e~~e~~~~i~~l~ee~~~ke~Ea~~lq 109 (246)
T PF00769_consen 83 ELREAEAEIARLEEESERKEEEAEELQ 109 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444443
No 263
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=66.57 E-value=1.6e+02 Score=30.08 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 006200 471 EIQKLLGRNATLAEELAKI 489 (657)
Q Consensus 471 eiq~L~~~~~~L~~~l~~~ 489 (657)
++..++-++..+++++.+.
T Consensus 5 ~va~lnrri~~leeele~a 23 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRA 23 (205)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4555666666666665433
No 264
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=66.25 E-value=1.9 Score=51.57 Aligned_cols=15 Identities=40% Similarity=0.461 Sum_probs=0.0
Q ss_pred HHhHhHHHHHHHHHc
Q 006200 564 QTNFHLEKEVKALKS 578 (657)
Q Consensus 564 ~~~~~le~e~~~lr~ 578 (657)
.++.+|+.|++.|+.
T Consensus 459 erl~rLe~ENk~Lk~ 473 (713)
T PF05622_consen 459 ERLLRLEHENKRLKE 473 (713)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 345567777777764
No 265
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=66.21 E-value=1.4e+02 Score=29.34 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcCCC
Q 006200 528 KEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGS 581 (657)
Q Consensus 528 ~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~~~ 581 (657)
+....-+..+...++......+..+.++...+..+..+...+...+..++..++
T Consensus 83 keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~ 136 (177)
T PF13870_consen 83 KEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGG 136 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333344455555555555555555555555555555666666666666665444
No 266
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=65.99 E-value=16 Score=32.49 Aligned_cols=61 Identities=15% Similarity=0.231 Sum_probs=48.3
Q ss_pred chHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchhHHhHHHHHHHHhhcCChh
Q 006200 79 PVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAADRIFNSFCEKNPD 151 (657)
Q Consensus 79 p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~~r~AA~~cf~ayl~~N~~ 151 (657)
.++||+.+|+.+..+|+.+. ..+ ...|.+..++...|..++.-.+.+|..||-+....+|+
T Consensus 16 ~~PvRa~gL~~L~~Li~~~~--------~~~----~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 16 LPPVRAHGLVLLRKLIESKS--------EPV----IDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred CcchHHHHHHHHHHHHHcCC--------cch----hhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 67899999999999999876 111 23567777888888777777778999999888888876
No 267
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=65.97 E-value=1.6e+02 Score=29.86 Aligned_cols=158 Identities=15% Similarity=0.181 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHH-HHHH---HH-
Q 006200 457 YVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLE-ILKE---EK- 531 (657)
Q Consensus 457 ~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e-~l~~---e~- 531 (657)
+++.+.+=...-++.|.+++..+..+...+++.-. ..-..+.+++.+++..+....+.. +|+. .+
T Consensus 17 ~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a----------~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLA 86 (221)
T PF04012_consen 17 LLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMA----------NQKRLERKLDEAEEEAEKWEKQAELALAAGREDLA 86 (221)
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 34434344466677777777777777775533321 001223333333333333222221 1111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcCCCCCCcccHHHHHHH-HHHHHHHHHHH-----
Q 006200 532 AQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAE-AREEAQKESEA----- 605 (657)
Q Consensus 532 ~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~~~~~~~~~l~~~~~~-~~~e~~~~~~~----- 605 (657)
+.+=.+...+...+..++..+..+...+..|...+..++..+.+++.+ ....++. ....+.+.+..
T Consensus 87 r~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k--------~~~l~ar~~~a~a~~~~~~~~~~~ 158 (221)
T PF04012_consen 87 REALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSK--------REELKARENAAKAQKKVNEALASF 158 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhccC
Confidence 222333344444445555555555555555555555555555555532 1111111 11122222222
Q ss_pred hHhHHHHHhhhhhhhHHHHHHHHHHcC
Q 006200 606 ELNDLLVCLGQEQSKVEKLSARLLELG 632 (657)
Q Consensus 606 e~~dLl~ll~d~~~K~~~~k~~L~~lg 632 (657)
..++..--|...+.|+.+...+.....
T Consensus 159 ~~~~a~~~~er~e~ki~~~ea~a~a~~ 185 (221)
T PF04012_consen 159 SVSSAMDSFERMEEKIEEMEARAEASA 185 (221)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 245566666677777777666655443
No 268
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=65.86 E-value=2e+02 Score=31.10 Aligned_cols=100 Identities=18% Similarity=0.230 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 470 SEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKME 549 (657)
Q Consensus 470 ~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le 549 (657)
.++-.|+..|..|.++|..... +..+.+.++...+-.|.+.+-.+|.+...+.+.+-.+..+..+...-+
T Consensus 137 ~d~S~lkd~ne~LsQqLskaes----------K~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~ 206 (305)
T PF14915_consen 137 SDVSNLKDNNEILSQQLSKAES----------KFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQ 206 (305)
T ss_pred chHHhHHHHhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3555666677777776644331 111334444555555555555556666666666666666666655555
Q ss_pred HhHHHhHHHHhHHHHHhHhHHHHHHHHHcC
Q 006200 550 SDLKSLSDAYNSLEQTNFHLEKEVKALKSG 579 (657)
Q Consensus 550 ~~l~~ls~~~~~Le~~~~~le~e~~~lr~~ 579 (657)
..+.+-..+-+++|..+.+++.|+-=||++
T Consensus 207 ~kv~k~~~Kqes~eERL~QlqsEN~LLrQQ 236 (305)
T PF14915_consen 207 DKVNKYIGKQESLEERLSQLQSENMLLRQQ 236 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555566666666666666555554
No 269
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=65.85 E-value=69 Score=36.96 Aligned_cols=6 Identities=50% Similarity=0.900 Sum_probs=2.2
Q ss_pred HHHHHH
Q 006200 513 LRKDLH 518 (657)
Q Consensus 513 L~~~L~ 518 (657)
|+.+++
T Consensus 76 l~~~l~ 81 (525)
T TIGR02231 76 LRKQIR 81 (525)
T ss_pred HHHHHH
Confidence 333333
No 270
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=65.72 E-value=3.4e+02 Score=34.10 Aligned_cols=47 Identities=19% Similarity=0.186 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHH
Q 006200 530 EKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKAL 576 (657)
Q Consensus 530 e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~l 576 (657)
+..+|.+....+++....+...++.++.+...|++....+|+|+.-|
T Consensus 503 elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~L 549 (1195)
T KOG4643|consen 503 ELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHL 549 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44555555555555555555555555555555554444444444333
No 271
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=65.29 E-value=1.2e+02 Score=28.45 Aligned_cols=43 Identities=14% Similarity=0.294 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKME 549 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le 549 (657)
+.+++.|..+++..+..++.+..++..+++.+..++...+.++
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~ 47 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLE 47 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666665555555555555555555555544443333
No 272
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=65.27 E-value=2.1 Score=51.32 Aligned_cols=16 Identities=31% Similarity=0.281 Sum_probs=10.7
Q ss_pred hHhHHHHHHHhhhhHh
Q 006200 308 VCTRGLAAVLLGECVI 323 (657)
Q Consensus 308 ~lVqGL~A~LLG~Cv~ 323 (657)
.-+.-|+.++|||.|.
T Consensus 109 ~El~kLL~LlLgcAV~ 124 (713)
T PF05622_consen 109 EELKKLLQLLLGCAVQ 124 (713)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhhc
Confidence 4466777888886553
No 273
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=65.22 E-value=1.3e+02 Score=29.64 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=6.8
Q ss_pred HHHhHHHHHhHhHHHHH
Q 006200 557 DAYNSLEQTNFHLEKEV 573 (657)
Q Consensus 557 ~~~~~Le~~~~~le~e~ 573 (657)
.++.+|+.++.+|+..+
T Consensus 96 ~~v~~Le~e~r~L~~~~ 112 (158)
T PF09744_consen 96 SQVEQLEEENRQLELKL 112 (158)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33333334444444333
No 274
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=65.22 E-value=47 Score=42.17 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=14.4
Q ss_pred hhhhhhhHHHHHHHHHHcCchhhh
Q 006200 614 LGQEQSKVEKLSARLLELGEDVEK 637 (657)
Q Consensus 614 l~d~~~K~~~~k~~L~~lg~~v~~ 637 (657)
+.+.+.+ ...-..|++.|-++.+
T Consensus 231 ~~E~~tr-~~Id~~L~~aGW~~~~ 253 (1123)
T PRK11448 231 LSEEETR-ILIDQQLRKAGWEADS 253 (1123)
T ss_pred CCHHHHH-HHHHHHHHHCCCCCCC
Confidence 3344444 3455678999988865
No 275
>PF14282 FlxA: FlxA-like protein
Probab=65.18 E-value=50 Score=30.03 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006200 520 ASQRLEILKEEKAQIESD 537 (657)
Q Consensus 520 ~~~~~e~l~~e~~~~eae 537 (657)
++..+..|++++++++.+
T Consensus 56 Lq~QI~~LqaQI~qlq~q 73 (106)
T PF14282_consen 56 LQAQIQQLQAQIAQLQSQ 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444443
No 276
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=65.15 E-value=3.3e+02 Score=33.36 Aligned_cols=31 Identities=23% Similarity=0.317 Sum_probs=14.3
Q ss_pred HHHHHHHHhHHHhHHHHhHHHHHhHhHHHHH
Q 006200 543 NLAAKMESDLKSLSDAYNSLEQTNFHLEKEV 573 (657)
Q Consensus 543 ~~a~~le~~l~~ls~~~~~Le~~~~~le~e~ 573 (657)
...+..+.++..|..++.+.|.+|..|.=|+
T Consensus 127 ~~~~~~e~~~~~l~~~l~~~eken~~Lkye~ 157 (769)
T PF05911_consen 127 EEKSQAEAEIEDLMARLESTEKENSSLKYEL 157 (769)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444555555555555444443
No 277
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=65.13 E-value=56 Score=33.40 Aligned_cols=72 Identities=19% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhH--HHHhHHHHHhHhHHHHHHHHHcCCCCCCcccHHHHHHH--HHHHHHHHHHHhH
Q 006200 532 AQIESDSSMYRNLAAKMESDLKSLS--DAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAE--AREEAQKESEAEL 607 (657)
Q Consensus 532 ~~~eae~~~~~~~a~~le~~l~~ls--~~~~~Le~~~~~le~e~~~lr~~~~~~~~~~l~~~~~~--~~~e~~~~~~~e~ 607 (657)
.++..-+.+++..+...-..|+.++ ..++.|...+..+|.+++++| ..+..+|+. ..-..+..+|+|.
T Consensus 5 ~~~~~~~d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r--------~~~~~aK~~Y~~ai~~Rs~sQrEv 76 (207)
T PF05546_consen 5 KKLSFYMDSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAAR--------QEVREAKAAYDDAIQQRSSSQREV 76 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHH
Q 006200 608 NDLL 611 (657)
Q Consensus 608 ~dLl 611 (657)
++||
T Consensus 77 n~LL 80 (207)
T PF05546_consen 77 NELL 80 (207)
T ss_pred HHHH
No 278
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=65.01 E-value=1.9e+02 Score=30.61 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006200 464 FVEKQCSEIQKLLGRNATLAEEL 486 (657)
Q Consensus 464 ~i~~Q~~eiq~L~~~~~~L~~~l 486 (657)
.+..+.++.|++..++..|+.+.
T Consensus 137 rlA~kEQEmqe~~sqi~~lK~qq 159 (330)
T KOG2991|consen 137 RLATKEQEMQECTSQIQYLKQQQ 159 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566677777777777777753
No 279
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=64.70 E-value=29 Score=39.61 Aligned_cols=34 Identities=24% Similarity=0.221 Sum_probs=22.1
Q ss_pred HHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcC
Q 006200 546 AKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSG 579 (657)
Q Consensus 546 ~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~ 579 (657)
+.|.....+++.+++.||.++.+|++++++++..
T Consensus 93 q~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 93 DVLNKQRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 3344444455566667778888888888776653
No 280
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=64.56 E-value=1e+02 Score=33.00 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006200 457 YVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIG 490 (657)
Q Consensus 457 ~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~ 490 (657)
.|..||..+++-.+.|++=..++..|+.||.+.+
T Consensus 69 ~iRHLkakLkes~~~l~dRetEI~eLksQL~RMr 102 (305)
T PF15290_consen 69 CIRHLKAKLKESENRLHDRETEIDELKSQLARMR 102 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5667777777666666665555555555554443
No 281
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=64.39 E-value=50 Score=38.13 Aligned_cols=101 Identities=13% Similarity=0.194 Sum_probs=55.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCcchhhhhhc--cccHHHHHHHHHHHHHHHHHHHHHH
Q 006200 453 SDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIG--GDGASQSEQRASG--ALDRVQVETLRKDLHEASQRLEILK 528 (657)
Q Consensus 453 ~s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~--~~~~~~~~~~~~~--~~~~~q~e~L~~~L~~~~~~~e~l~ 528 (657)
..++-+..|+++|++...++..++.++..++.++.-.. +.... ...+. ......++++.+-++-..+++.++.
T Consensus 68 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (525)
T TIGR02231 68 PDPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLT---EPIKDSAKRNEPDLKEWFQAFDFNGSEIERLL 144 (525)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---cccccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34557788999999999999999988888888773222 10000 00000 0011223445444554455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhH
Q 006200 529 EEKAQIESDSSMYRNLAAKMESDLKSLS 556 (657)
Q Consensus 529 ~e~~~~eae~~~~~~~a~~le~~l~~ls 556 (657)
.++..++.++..+++..++++..|..++
T Consensus 145 ~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 145 TEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5555555555555555555554444443
No 282
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=64.34 E-value=1.6e+02 Score=30.76 Aligned_cols=50 Identities=24% Similarity=0.280 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 528 KEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 528 ~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
+.+..+.+.++......|..|+..++.+...-..|++....++.+...|+
T Consensus 18 eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~ 67 (246)
T PF00769_consen 18 EEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLE 67 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444443
No 283
>PRK09343 prefoldin subunit beta; Provisional
Probab=64.06 E-value=1.2e+02 Score=28.10 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 461 LKAFVEKQCSEIQKLLGRNATLAE 484 (657)
Q Consensus 461 lk~~i~~Q~~eiq~L~~~~~~L~~ 484 (657)
+...++.+-.++|.+++++..+..
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~ 28 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQ 28 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666555555
No 284
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=63.89 E-value=3.8e+02 Score=33.61 Aligned_cols=72 Identities=19% Similarity=0.355 Sum_probs=51.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHH
Q 006200 505 LDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKAL 576 (657)
Q Consensus 505 ~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~l 576 (657)
.-+.+++.|.+-+.....+...+..++..++++.+..-+-+.+++..+.....+...+.+++.++..+..++
T Consensus 394 wir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del 465 (1200)
T KOG0964|consen 394 WIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDEL 465 (1200)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 447788888888887777777778888888888877777777777777766666666666666555555444
No 285
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=63.49 E-value=22 Score=26.06 Aligned_cols=38 Identities=21% Similarity=0.268 Sum_probs=33.7
Q ss_pred hhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHH
Q 006200 54 TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDII 94 (657)
Q Consensus 54 ~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlI 94 (657)
.|...+.++|.+..|+.+.- + .+..|+.+|..+++.+-
T Consensus 3 ~~~~~i~~~g~i~~Lv~ll~-~--~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 3 ENKQAIVEAGGIPPLVQLLK-S--PDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTHHHHHHHHTT-S--SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHc-C--CCHHHHHHHHHHHHHHh
Confidence 68889999999999999988 4 48999999999998764
No 286
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=63.35 E-value=2.6e+02 Score=31.59 Aligned_cols=19 Identities=11% Similarity=0.134 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006200 468 QCSEIQKLLGRNATLAEEL 486 (657)
Q Consensus 468 Q~~eiq~L~~~~~~L~~~l 486 (657)
-+.+|.+++.++...+.++
T Consensus 200 l~~~l~~lr~~~~~ae~~~ 218 (458)
T COG3206 200 LDERLEELRARLQEAEAQV 218 (458)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 287
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=63.26 E-value=79 Score=26.97 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHH
Q 006200 536 SDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEK 571 (657)
Q Consensus 536 ae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~ 571 (657)
.-+..++.....++..+..++.+++.++.++..++.
T Consensus 33 ~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 33 NTIKKLRAKIKELEKQIKELKKKLEELEKELESLEE 68 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444433333
No 288
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=63.03 E-value=62 Score=26.42 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=12.6
Q ss_pred HHHHhHHHhHHHHhHHHHHhHhHHHHHHHH
Q 006200 547 KMESDLKSLSDAYNSLEQTNFHLEKEVKAL 576 (657)
Q Consensus 547 ~le~~l~~ls~~~~~Le~~~~~le~e~~~l 576 (657)
++.+++..|+.++.+|..++..+..++..+
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~a 36 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNALRADVQAA 36 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433333
No 289
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=62.77 E-value=1.9e+02 Score=29.70 Aligned_cols=21 Identities=19% Similarity=0.098 Sum_probs=10.1
Q ss_pred HHHHHHhHhHHHHHhhhhhhh
Q 006200 600 QKESEAELNDLLVCLGQEQSK 620 (657)
Q Consensus 600 ~~~~~~e~~dLl~ll~d~~~K 620 (657)
+..-.+|-++|--+-.|+=.|
T Consensus 184 LeQK~kEn~ELtkICDeLI~k 204 (207)
T PF05010_consen 184 LEQKTKENEELTKICDELISK 204 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555554444
No 290
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=62.77 E-value=92 Score=33.29 Aligned_cols=10 Identities=20% Similarity=0.355 Sum_probs=4.7
Q ss_pred HHHhHhHHHH
Q 006200 563 EQTNFHLEKE 572 (657)
Q Consensus 563 e~~~~~le~e 572 (657)
|.+++|.|++
T Consensus 107 EEECHRVEAQ 116 (305)
T PF15290_consen 107 EEECHRVEAQ 116 (305)
T ss_pred HHHHHHHHHH
Confidence 3445554444
No 291
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=62.34 E-value=2.2e+02 Score=30.27 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 532 AQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 532 ~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
.+++...+++++|..++++.+.+|..++..|++.+....+|+..|+
T Consensus 63 ~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~ 108 (258)
T PF15397_consen 63 KQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLS 108 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666777778888888888888888877777777776665
No 292
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=62.34 E-value=2.2e+02 Score=30.36 Aligned_cols=96 Identities=21% Similarity=0.248 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 457 YVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIES 536 (657)
Q Consensus 457 ~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~ea 536 (657)
+-..+|..|.....+++.++..+.+++.+- +....+++.-+.+|+-.++++..|+ +
T Consensus 163 iE~~l~~ai~~~~~~~~~~~~~l~~l~~de-----------------~~Le~KIekkk~ELER~qKRL~sLq-------~ 218 (267)
T PF10234_consen 163 IEKALKEAIKAVQQQLQQTQQQLNNLASDE-----------------ANLEAKIEKKKQELERNQKRLQSLQ-------S 218 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHH-------h
Confidence 445678888888888888888888887742 1334455555666666666655443 2
Q ss_pred HHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHH
Q 006200 537 DSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKAL 576 (657)
Q Consensus 537 e~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~l 576 (657)
=-=.|..-..++|.+|.++=+.|-.--+-..-||.++...
T Consensus 219 vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle~~ 258 (267)
T PF10234_consen 219 VRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQLEEY 258 (267)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 2223334445566666666655554333333355554443
No 293
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=62.11 E-value=1.2e+02 Score=27.19 Aligned_cols=66 Identities=18% Similarity=0.347 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHh---HhHHHHHHHHH
Q 006200 512 TLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTN---FHLEKEVKALK 577 (657)
Q Consensus 512 ~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~---~~le~e~~~lr 577 (657)
-++.+|+.......-|+..+...-.+...++..+..+...+..++..|++|...+ -..++++.+|.
T Consensus 11 ~v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE 79 (99)
T PF10046_consen 11 YVESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELE 79 (99)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777888888888888888888888888888888888776433 33445665554
No 294
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=62.01 E-value=2.1e+02 Score=31.16 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=13.8
Q ss_pred hHHHhHHHHhHHHHHhHhHHHHHH
Q 006200 551 DLKSLSDAYNSLEQTNFHLEKEVK 574 (657)
Q Consensus 551 ~l~~ls~~~~~Le~~~~~le~e~~ 574 (657)
-++.|..+...|+.+...|+.++.
T Consensus 179 lvN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 179 LVNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445555666666666666665543
No 295
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=61.65 E-value=1.1e+02 Score=29.42 Aligned_cols=18 Identities=28% Similarity=0.274 Sum_probs=10.7
Q ss_pred HHHHHhHhHHHHHHHHHc
Q 006200 561 SLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 561 ~Le~~~~~le~e~~~lr~ 578 (657)
+-|+++.+|..|++.+|.
T Consensus 79 ~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 79 QREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHHHHHcCHHHHH
Confidence 334566666666666663
No 296
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=61.61 E-value=4.2e+02 Score=33.31 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 455 KDYVKRLKAFVEKQCSEIQKLLGR 478 (657)
Q Consensus 455 ~~~v~~lk~~i~~Q~~eiq~L~~~ 478 (657)
.+.+.+|++.+.++.+..+..+++
T Consensus 201 ~~~l~~L~~~~~~l~kdVE~~rer 224 (1072)
T KOG0979|consen 201 TEKLNRLEDEIDKLEKDVERVRER 224 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666655554
No 297
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=61.55 E-value=1.8e+02 Score=35.04 Aligned_cols=71 Identities=20% Similarity=0.330 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHH---HHhHhHHHHHHHHH
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLE---QTNFHLEKEVKALK 577 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le---~~~~~le~e~~~lr 577 (657)
..++..|++++..+++.+..++++...+..+..........+..+|..+...|..-. .++.+|-.++.+|+
T Consensus 240 ~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLk 313 (670)
T KOG0239|consen 240 KKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELK 313 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445777888888888888788877777777777777766666666666665555444 56666777777776
No 298
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=61.48 E-value=2.4e+02 Score=30.49 Aligned_cols=20 Identities=10% Similarity=-0.036 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006200 463 AFVEKQCSEIQKLLGRNATL 482 (657)
Q Consensus 463 ~~i~~Q~~eiq~L~~~~~~L 482 (657)
..+.+...+++.+++++..+
T Consensus 86 ~~l~~a~a~l~~a~a~l~~~ 105 (346)
T PRK10476 86 LTVAQAQADLALADAQIMTT 105 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 299
>PLN02939 transferase, transferring glycosyl groups
Probab=61.40 E-value=4.2e+02 Score=33.33 Aligned_cols=73 Identities=23% Similarity=0.303 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHhhc-CCCCcchhhhhhccccHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Q 006200 471 EIQKLLGRNATLAEELAKIG-GDGASQSEQRASGALDRVQVETLRKDLHE-----------ASQRLEILKEEKAQIESDS 538 (657)
Q Consensus 471 eiq~L~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~~~~~q~e~L~~~L~~-----------~~~~~e~l~~e~~~~eae~ 538 (657)
+-+.|+.++..|+.+|..+. +-+.+. ..+......+.|++.|+..|.. +..+...|+.|+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (977)
T PLN02939 164 EKEALQGKINILEMRLSETDARIKLAA-QEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDI 242 (977)
T ss_pred HHHHHHhhHHHHHHHhhhhhhhhhhhh-hccccchhhHHHHHHHhhhhhccccccccccccHHHHHHHHHHHhHHHHHHH
Confidence 33456666777777665432 111110 0111112345666777666644 2344445555665555555
Q ss_pred HHHHHH
Q 006200 539 SMYRNL 544 (657)
Q Consensus 539 ~~~~~~ 544 (657)
..+|..
T Consensus 243 ~~~~~~ 248 (977)
T PLN02939 243 QFLKAE 248 (977)
T ss_pred HHHHHH
Confidence 555443
No 300
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=61.36 E-value=1.2e+02 Score=27.02 Aligned_cols=63 Identities=16% Similarity=0.258 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 516 DLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 516 ~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
+|....+..+.+.........+...+.+...+++.+..+....|-..++....+..|++.|+.
T Consensus 4 EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~ 66 (96)
T PF08647_consen 4 ELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNT 66 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444444444555555666666777777777777777777777777777778888777774
No 301
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=61.31 E-value=2.7e+02 Score=32.52 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHH
Q 006200 533 QIESDSSMYRNLAAKMESDLKS 554 (657)
Q Consensus 533 ~~eae~~~~~~~a~~le~~l~~ 554 (657)
+.....+.+.....+++.++..
T Consensus 319 Kyg~s~e~l~~~~~~l~~eL~~ 340 (563)
T TIGR00634 319 KYGASVEEVLEYAEKIKEELDQ 340 (563)
T ss_pred HhCCCHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444
No 302
>PRK10698 phage shock protein PspA; Provisional
Probab=61.26 E-value=2e+02 Score=29.58 Aligned_cols=43 Identities=12% Similarity=0.145 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHh
Q 006200 526 ILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFH 568 (657)
Q Consensus 526 ~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~ 568 (657)
.|+.+....+..+..++....+|+..+..+..+.+.|-+....
T Consensus 103 ~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~ 145 (222)
T PRK10698 103 TLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQA 145 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555444333
No 303
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=61.04 E-value=1.2e+02 Score=36.39 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006200 512 TLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKS 554 (657)
Q Consensus 512 ~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ 554 (657)
.|+.++......++.+..++.+-.+|...+...++++=.++.+
T Consensus 100 tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g 142 (660)
T KOG4302|consen 100 TLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGG 142 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4555555555555555555555566666655555555544443
No 304
>PRK14139 heat shock protein GrpE; Provisional
Probab=60.92 E-value=96 Score=31.24 Aligned_cols=47 Identities=15% Similarity=0.162 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLK 553 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~ 553 (657)
..+++.|+.++++++++++.+++...++.++.++|++...+-..+..
T Consensus 31 ~~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~ 77 (185)
T PRK14139 31 EDAAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAH 77 (185)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888899999999999999999999999999988777664443
No 305
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=60.88 E-value=1.6e+02 Score=35.45 Aligned_cols=17 Identities=18% Similarity=0.016 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHhhc
Q 006200 474 KLLGRNATLAEELAKIG 490 (657)
Q Consensus 474 ~L~~~~~~L~~~l~~~~ 490 (657)
.|+.+++-++.++.+.-
T Consensus 116 slqerLelaE~~l~qs~ 132 (916)
T KOG0249|consen 116 SLQERLELAEPKLQQSL 132 (916)
T ss_pred hhhHHHHHhhHhhHhHH
Confidence 34445555555554443
No 306
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=60.83 E-value=2.5e+02 Score=30.58 Aligned_cols=46 Identities=17% Similarity=0.354 Sum_probs=24.8
Q ss_pred hHHHHHHHhhhhHhhcCCCCCCCChhHHHHHHHhhcchhhHHHHHHHHhccc
Q 006200 310 TRGLAAVLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQKSF 361 (657)
Q Consensus 310 VqGL~A~LLG~Cv~Yn~ss~~~~ds~~l~~lI~~RiG~d~y~~kl~~lr~~~ 361 (657)
+.|+.+++-| ..-..+ .-+..++.++|.+|==.+..+.++ .|++++
T Consensus 47 ~~~~~~~~~~--~~~~~~---~~~~~~~~e~L~Sr~~~~~v~~~l-~L~~~~ 92 (362)
T TIGR01010 47 LSGVGALLQG--SGFSRS---QDDTYTVQEYMRSRDMLAALEKEL-PFREFF 92 (362)
T ss_pred cchHHHHhcc--CCCCCC---cccHHHHHHHHhhHHHHHHHHhcC-CHHHHh
Confidence 5666666555 111011 124566778888876666555555 455543
No 307
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=60.64 E-value=96 Score=37.43 Aligned_cols=19 Identities=11% Similarity=-0.073 Sum_probs=9.5
Q ss_pred HHHHhhhhhhhHHHHHHHH
Q 006200 610 LLVCLGQEQSKVEKLSARL 628 (657)
Q Consensus 610 Ll~ll~d~~~K~~~~k~~L 628 (657)
+..|--+.+.+..-|...|
T Consensus 372 ~~~L~R~~~~~~~lY~~lL 390 (726)
T PRK09841 372 VLRLSRDVEAGRAVYLQLL 390 (726)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555433
No 308
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=60.61 E-value=38 Score=35.79 Aligned_cols=73 Identities=19% Similarity=0.248 Sum_probs=56.7
Q ss_pred chhHHHHHHHHHHHhhHhccCCCCCCCCCccchhhhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChh
Q 006200 20 TQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPK 99 (657)
Q Consensus 20 ~~Qk~~N~~~~L~ivrllV~~g~~~~~~~~~~~~~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~ 99 (657)
++.-+.|+..+||=+-||-+ ..+..|.+.+-+..++.+.= +.-|..|...+|.|+--+...++.
T Consensus 104 ~~~li~~aL~vLQGl~LLHp--------------~Sr~lF~r~~~m~lll~LL~--~~~~~~i~~a~L~tLv~iLld~p~ 167 (257)
T PF08045_consen 104 NDSLIALALRVLQGLCLLHP--------------PSRKLFHREQNMELLLDLLS--PSNPPAIQSACLDTLVCILLDSPE 167 (257)
T ss_pred hhHHHHHHHHHHHHHHHcCc--------------hHHHHHhhhhhHHHHHHHhc--cCCCchHHHHHHHHHHHHHHcChH
Confidence 33345555555555555543 47899999999999999872 345899999999999999999999
Q ss_pred hHHHhhccc
Q 006200 100 NRDVLASKV 108 (657)
Q Consensus 100 nQ~~fa~~~ 108 (657)
|+..|-...
T Consensus 168 N~r~FE~~~ 176 (257)
T PF08045_consen 168 NQRDFEELN 176 (257)
T ss_pred HHHHHHHhC
Confidence 999998873
No 309
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=60.35 E-value=1.6e+02 Score=27.97 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHH
Q 006200 535 ESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLE 570 (657)
Q Consensus 535 eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le 570 (657)
+.++...+...+....++.+.+..+..||..+.++|
T Consensus 88 ~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 88 KDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444455555555555555555554443
No 310
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=59.70 E-value=1.2e+02 Score=26.25 Aligned_cols=80 Identities=20% Similarity=0.166 Sum_probs=55.9
Q ss_pred hhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchh
Q 006200 54 TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQ 133 (657)
Q Consensus 54 ~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~ 133 (657)
.+...+.+.|++..++.+.- + -...|+..|+.+++.+..+.+.....+..-.+ .|.+.. .+...+..
T Consensus 40 ~~~~~~~~~~~i~~l~~~l~-~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~------l~~l~~----~l~~~~~~ 106 (120)
T cd00020 40 DNIQAVVEAGGLPALVQLLK-S--EDEEVVKAALWALRNLAAGPEDNKLIVLEAGG------VPKLVN----LLDSSNED 106 (120)
T ss_pred HHHHHHHHCCChHHHHHHHh-C--CCHHHHHHHHHHHHHHccCcHHHHHHHHHCCC------hHHHHH----HHhcCCHH
Confidence 56777888899999999865 3 26799999999999999988766666554322 223333 33454566
Q ss_pred HHhHHHHHHHHhh
Q 006200 134 EFLAADRIFNSFC 146 (657)
Q Consensus 134 ~r~AA~~cf~ayl 146 (657)
.+-.|+++|...+
T Consensus 107 ~~~~a~~~l~~l~ 119 (120)
T cd00020 107 IQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHHHhh
Confidence 7777888776543
No 311
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=59.31 E-value=1.6e+02 Score=27.85 Aligned_cols=55 Identities=15% Similarity=0.291 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHH
Q 006200 509 QVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLE 563 (657)
Q Consensus 509 q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le 563 (657)
.++.|-.+|++.....+..+++...+...++..+.-....+..+..|..++.++|
T Consensus 69 RId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 69 RIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555444444555555555555555555555555555555554444
No 312
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=59.22 E-value=47 Score=33.32 Aligned_cols=55 Identities=13% Similarity=0.118 Sum_probs=41.6
Q ss_pred hhhhHHHHHhhcHHHHHHHH---HhccCC-------------CchHhHHHHHHHHHHHHhcChhhHHHhhcc
Q 006200 52 KLTNKTVLVQKKALDNLLML---AVESQW-------------APVAVRCAALRCISDIIAAHPKNRDVLASK 107 (657)
Q Consensus 52 ~~~nQ~~l~q~glL~~ll~L---a~~s~~-------------~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~ 107 (657)
.+.+|+.|..-|++..++.+ .| +.. ....|-..+.+.+...++||+.||.+|++-
T Consensus 32 ~~~rQ~llrnl~i~~~v~~~L~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~ 102 (207)
T PF01365_consen 32 NRERQKLLRNLGIHELVLDLLKNPF-DQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH 102 (207)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHC-TS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHhhhhh-hcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 45799999999998888776 34 221 114677888999999999999999998863
No 313
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=59.14 E-value=2.5e+02 Score=30.04 Aligned_cols=13 Identities=15% Similarity=0.319 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 006200 510 VETLRKDLHEASQ 522 (657)
Q Consensus 510 ~e~L~~~L~~~~~ 522 (657)
++.++.+++.++.
T Consensus 109 i~~~~~~l~~ak~ 121 (331)
T PRK03598 109 IAQARAAVKQAQA 121 (331)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444433333
No 314
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=59.12 E-value=5.1e+02 Score=33.53 Aligned_cols=155 Identities=25% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 458 VKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESD 537 (657)
Q Consensus 458 v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae 537 (657)
....+..+..+-+.++++..++..+.+...... .+--.....+.-++-.|+++....+.+++++...+..
T Consensus 866 ~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~----------s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~~~~~ 935 (1294)
T KOG0962|consen 866 LKEEKQKIERSLARLQQLEEDIEELSEEITRLD----------SKVKELLERIQPLKVELEEAQSEKEELKNERNTSEKL 935 (1294)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----------HHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhHHHHH
Q ss_pred HHHHHHHHHHHHH------------------------------------------------------------hHHHhHH
Q 006200 538 SSMYRNLAAKMES------------------------------------------------------------DLKSLSD 557 (657)
Q Consensus 538 ~~~~~~~a~~le~------------------------------------------------------------~l~~ls~ 557 (657)
+..+.+-+..+.+ .++.+..
T Consensus 936 aqk~~~~ine~~s~l~~~~~~~~~~~~~~~~~~~~~~l~~~~e~l~~~~~~~~~~~~~l~~~~~~er~l~dnl~~~~l~~ 1015 (1294)
T KOG0962|consen 936 AQKKRNDINEKVSLLHQIYKLNECFEQYGFDDLRIAQLSESEEHLEERDNEVNEIKQKIRNQYQRERNLKDNLTLRNLER 1015 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHhHhHHHHHHHHHcCCCCCCcccHHHHHHHHHHHHHHHHHHhHhHHHHHhhhhhhhHHHHHHHHHH
Q 006200 558 AYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAEAREEAQKESEAELNDLLVCLGQEQSKVEKLSARLLE 630 (657)
Q Consensus 558 ~~~~Le~~~~~le~e~~~lr~~~~~~~~~~l~~~~~~~~~e~~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~ 630 (657)
++..++.+..++..|+-+.+ -..-+.+...-.+.+..+-++..+++-.+.+.+.-+.++++.|++
T Consensus 1016 q~~e~~re~~~ld~Qi~~~~--------~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~~ 1080 (1294)
T KOG0962|consen 1016 KLKELERELSELDKQILEAD--------IKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELRE 1080 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhhh
No 315
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=58.94 E-value=1.1e+02 Score=26.55 Aligned_cols=51 Identities=20% Similarity=0.322 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHH
Q 006200 508 VQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDA 558 (657)
Q Consensus 508 ~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~ 558 (657)
.|..+|+.+|...+.+++.|..-...++.++-.|.....++|.+...+...
T Consensus 5 ~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~~ 55 (76)
T PF11544_consen 5 KQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQRS 55 (76)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677778877777777777777777777777777777777655554443
No 316
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=58.64 E-value=1.9e+02 Score=28.44 Aligned_cols=31 Identities=16% Similarity=0.295 Sum_probs=16.1
Q ss_pred hhhhhhhHHHHHHHHHHcCchhhhhhccCCC
Q 006200 614 LGQEQSKVEKLSARLLELGEDVEKLLEGIGD 644 (657)
Q Consensus 614 l~d~~~K~~~~k~~L~~lg~~v~~~~~~~~~ 644 (657)
++..+..+..|.+++..+--....-.++-.|
T Consensus 116 Iarn~a~id~~~er~~~l~r~~ea~~eda~D 146 (158)
T PF09486_consen 116 IARNDARIDVCRERIDRLRRAAEAAAEDAQD 146 (158)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhHHHhcc
Confidence 4455556666666665554444444444333
No 317
>PF13166 AAA_13: AAA domain
Probab=58.39 E-value=3.8e+02 Score=31.88 Aligned_cols=24 Identities=29% Similarity=0.232 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 006200 465 VEKQCSEIQKLLGRNATLAEELAK 488 (657)
Q Consensus 465 i~~Q~~eiq~L~~~~~~L~~~l~~ 488 (657)
..+-...+..+...+..+...|..
T Consensus 324 ~~~~~~~~~~l~~~l~~l~~~L~~ 347 (712)
T PF13166_consen 324 KEELKSAIEALKEELEELKKALEK 347 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334455555555555555543
No 318
>PRK10869 recombination and repair protein; Provisional
Probab=58.38 E-value=3.3e+02 Score=31.87 Aligned_cols=37 Identities=8% Similarity=0.102 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhHHHhH---HHHhHHHHHhHhHHHHH
Q 006200 537 DSSMYRNLAAKMESDLKSLS---DAYNSLEQTNFHLEKEV 573 (657)
Q Consensus 537 e~~~~~~~a~~le~~l~~ls---~~~~~Le~~~~~le~e~ 573 (657)
.++.+-....+++.+|..+. ...+.|+++...+.+++
T Consensus 318 ~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l 357 (553)
T PRK10869 318 SPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQA 357 (553)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333 23333444444444433
No 319
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=58.28 E-value=4e+02 Score=32.07 Aligned_cols=72 Identities=22% Similarity=0.314 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhH--------------HHHhHHHHHhHhHHHH
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLS--------------DAYNSLEQTNFHLEKE 572 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls--------------~~~~~Le~~~~~le~e 572 (657)
-.|+.+|+.+|+.-+-....|-.....+..|...+.+-++.|-.+++++. .++..||..+.+|..+
T Consensus 470 skQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrne 549 (786)
T PF05483_consen 470 SKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNE 549 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888764433333322222333333333333333333332222 3455556666666666
Q ss_pred HHHHHc
Q 006200 573 VKALKS 578 (657)
Q Consensus 573 ~~~lr~ 578 (657)
+..+|+
T Consensus 550 les~~e 555 (786)
T PF05483_consen 550 LESVKE 555 (786)
T ss_pred HHHHHH
Confidence 655553
No 320
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=58.19 E-value=3.4e+02 Score=31.25 Aligned_cols=251 Identities=19% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHhhHhccCCCCCCCCCccchhhhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhcc
Q 006200 28 LSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASK 107 (657)
Q Consensus 28 ~~~L~ivrllV~~g~~~~~~~~~~~~~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~ 107 (657)
..+++++.-|.. .+ .+-.-|.+.|++..|+.+...+..-| |.-++...|-| ..|+.+
T Consensus 220 lnalell~~La~--~~----------~g~~yL~~~gi~~~L~~~l~~~~~dp---~~~~~~l~g~~--------~f~g~l 276 (503)
T PF10508_consen 220 LNALELLSELAE--TP----------HGLQYLEQQGIFDKLSNLLQDSEEDP---RLSSLLLPGRM--------KFFGNL 276 (503)
T ss_pred HHHHHHHHHHHc--Ch----------hHHHHHHhCCHHHHHHHHHhccccCC---cccchhhhhHH--------HHHHHH
Q ss_pred ccCCCCcc---chHHHHHHHHHhccCchhHHhHHHHHHHHhhcCChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHH
Q 006200 108 VLGEEPQV---EAALNSILRIILRTSSMQEFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSML 184 (657)
Q Consensus 108 ~vp~~p~~---~pal~~LL~~~L~~~~~~~r~AA~~cf~ayl~~N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~L 184 (657)
..-+++.. -|++...|..++...+...+.+|..+|-+.. .+.+|+..|...- .+.....
T Consensus 277 a~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~ig-st~~G~~~L~~~~-----------------~~~~~~~ 338 (503)
T PF10508_consen 277 ARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIG-STVEGKQLLLQKQ-----------------GPAMKHV 338 (503)
T ss_pred HhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHh-CCHHHHHHHHhhc-----------------chHHHHH
Q ss_pred hhhcccCCCCcchhHHHHHHHHHHHHhcCCHH-HHHHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcch
Q 006200 185 IRGLTLGESDGDLEVCCRAASVLSHILMDNLQ-CKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAG 263 (657)
Q Consensus 185 l~~L~s~d~~~dpy~~wfAa~iL~hll~dn~~-~Ke~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~ 263 (657)
+...+..-..+...-...+=..|..+|...+. ..+.+.+++-.-=. .-.+.+..+.++.++. ....|
T Consensus 339 l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~--~~~~~~~~~~l~~~~~----qPF~e------ 406 (503)
T PF10508_consen 339 LKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYE--SLSGSPLSNLLMSLLK----QPFPE------ 406 (503)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH--HhcCCchHHHHHHHhc----CCchH------
Q ss_pred hHHHHHHHHHHHHhhcChHHHHHhhcCCChHHHHHHHhhCCCCchHhHHHHHHHhhhhHhhcCCCCCCCCh----hHHHH
Q 006200 264 YIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELVSNPSATVCTRGLAAVLLGECVIYNKSSDTGRDA----FSIVD 339 (657)
Q Consensus 264 ~~~~gyL~LL~~WL~e~p~AV~~FL~~~s~l~~L~~~i~~~~~~~lVqGL~A~LLG~Cv~Yn~ss~~~~ds----~~l~~ 339 (657)
+|.+.+.+|..-... |=++..+.+.+.-+.||+ ++++++.|+. .++..
T Consensus 407 -lr~a~~~~l~~l~~~-~Wg~~~i~~~~gfie~ll--------------------------dr~~E~~K~~ke~K~~ii~ 458 (503)
T PF10508_consen 407 -LRCAAYRLLQALAAQ-PWGQREICSSPGFIEYLL--------------------------DRSTETTKEGKEAKYDIIK 458 (503)
T ss_pred -HHHHHHHHHHHHhcC-HHHHHHHHhCccHHhhhc--------------------------CCCCCCCHHHHHHHHHHHH
Q ss_pred HHH-------hhcchhhHHHHHHHHhc
Q 006200 340 SIS-------QKVGLTSYFLKFDEMQK 359 (657)
Q Consensus 340 lI~-------~RiG~d~y~~kl~~lr~ 359 (657)
.|. +-+|.-.|.+||+..-+
T Consensus 459 ~l~~~~~~~~~~~~~~~~~~kL~~yv~ 485 (503)
T PF10508_consen 459 ALAKSSTNASSVFDDPEYLGKLQEYVR 485 (503)
T ss_pred HHHhcccchhhcCCCHHHHHHHHHHHH
No 321
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=57.93 E-value=2e+02 Score=35.38 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhHhHHHHHhhhhh
Q 006200 595 AREEAQKESEAELNDLLVCLGQEQ 618 (657)
Q Consensus 595 ~~~e~~~~~~~e~~dLl~ll~d~~ 618 (657)
+++.-++..+.++++|++=|++..
T Consensus 278 k~~ahL~~~ea~i~~~~vrlae~~ 301 (984)
T COG4717 278 KREAHLQKTEAEIDALLVRLAELK 301 (984)
T ss_pred HHHHhhhhhhhhhHHHHHHHHhhh
Confidence 344455566666777777665443
No 322
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=57.71 E-value=2.6e+02 Score=31.12 Aligned_cols=44 Identities=16% Similarity=0.293 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHH
Q 006200 532 AQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKA 575 (657)
Q Consensus 532 ~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~ 575 (657)
..+-.|+..++..+..|+..|..+...++.|.....+|+.++.-
T Consensus 320 ~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~ 363 (384)
T PF03148_consen 320 YGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAV 363 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677777777777777777777777777766666666543
No 323
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=57.68 E-value=1.3e+02 Score=33.97 Aligned_cols=56 Identities=16% Similarity=0.276 Sum_probs=32.0
Q ss_pred HHHHHHhHHHHHHhhhhhcCCCCCccccchhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 414 VDIIKSLESSIRENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELA 487 (657)
Q Consensus 414 v~f~K~n~~~I~~ai~~~~~dP~~e~~~~~~~~~~~~~~~s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~ 487 (657)
++||++|-..|++++.. + +.. .+-+-+-.|...-++...+++.|+.+...+..++.
T Consensus 4 ~k~ir~n~~~v~~~l~~--R--~~~--------------~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~ 59 (425)
T PRK05431 4 IKLIRENPEAVKEALAK--R--GFP--------------LDVDELLELDEERRELQTELEELQAERNALSKEIG 59 (425)
T ss_pred HHHHHhCHHHHHHHHHh--c--CCc--------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888852 1 110 01122223555556666666666666666666553
No 324
>PLN03188 kinesin-12 family protein; Provisional
Probab=57.37 E-value=1.7e+02 Score=37.53 Aligned_cols=13 Identities=31% Similarity=0.248 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHH
Q 006200 470 SEIQKLLGRNATL 482 (657)
Q Consensus 470 ~eiq~L~~~~~~L 482 (657)
++||+|+.++..+
T Consensus 993 ~eI~dlr~qL~~~ 1005 (1320)
T PLN03188 993 EEIQDLRSQLQYY 1005 (1320)
T ss_pred HHHHHHHHHHHhh
Confidence 5677777655444
No 325
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=57.29 E-value=1.7e+02 Score=32.31 Aligned_cols=15 Identities=27% Similarity=0.330 Sum_probs=6.8
Q ss_pred hhhhhhhHHHHHHHH
Q 006200 614 LGQEQSKVEKLSARL 628 (657)
Q Consensus 614 l~d~~~K~~~~k~~L 628 (657)
..+.++++...++.+
T Consensus 185 ~~~~~~~v~~a~a~~ 199 (352)
T COG1566 185 VSGAQAQVASAEAAL 199 (352)
T ss_pred hccchhHHHHHHHHH
Confidence 334444444444444
No 326
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=57.22 E-value=2.7e+02 Score=31.58 Aligned_cols=28 Identities=7% Similarity=-0.129 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 460 RLKAFVEKQCSEIQKLLGRNATLAEELA 487 (657)
Q Consensus 460 ~lk~~i~~Q~~eiq~L~~~~~~L~~~l~ 487 (657)
.++..+....+.|..++.++..+...+.
T Consensus 169 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 196 (457)
T TIGR01000 169 AAEKTKAQLDQQISKTDQKLQDYQALKN 196 (457)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555666555555544
No 327
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.93 E-value=94 Score=26.46 Aligned_cols=41 Identities=12% Similarity=0.260 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHH
Q 006200 532 AQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKE 572 (657)
Q Consensus 532 ~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e 572 (657)
..++-|++.+|..-+.+..+..++..+.+.|+++|.++.+|
T Consensus 21 ~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 21 TLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEE 61 (79)
T ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444445555555544444
No 328
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=56.62 E-value=72 Score=27.37 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006200 465 VEKQCSEIQKLLGRNATLAEEL 486 (657)
Q Consensus 465 i~~Q~~eiq~L~~~~~~L~~~l 486 (657)
+++|.+.|..|+.+|=.|+=++
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI 23 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRI 23 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHH
Confidence 5678888888877777766655
No 329
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=56.56 E-value=3.5e+02 Score=30.80 Aligned_cols=198 Identities=16% Similarity=0.188 Sum_probs=0.0
Q ss_pred cccccHHHHHHHHHhHHHHHHhhhhhcCCCCCccccchhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 406 SSMFDKHFVDIIKSLESSIRENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEE 485 (657)
Q Consensus 406 ~v~FD~~Fv~f~K~n~~~I~~ai~~~~~dP~~e~~~~~~~~~~~~~~~s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~ 485 (657)
+.|=+|.+-.+=|..-+.=++++. ...|...++....=-+.+....-.+.-+-|.+.+.+-..+| .-++..|+++
T Consensus 156 e~~dny~~qsl~k~~ls~~~~a~~--snsptkriss~~~~nssg~ssn~~~tedl~~e~mee~r~di---~~kv~flerk 230 (502)
T KOG0982|consen 156 ESWDNYKYQSLEKDLLSVKKDAER--SNSPTKRISSSSSFNSSGKSSNKLETEDLLVEGMEEERIDI---ERKVRFLERK 230 (502)
T ss_pred chHHHHHHHHHHhhhccccchhhc--cCchhhhhhhhhhcccccccccccchhhhhhhhhhchhhhH---HHHHHHHHHH
Q ss_pred HHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHH
Q 006200 486 LAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQT 565 (657)
Q Consensus 486 l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~ 565 (657)
+.+...+.+....+..+ +++.--++..+.-+|+.+++..+--++..-.--.++..++--...+..+|+.+
T Consensus 231 v~eledd~~~~gd~~Sr----------lkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~E 300 (502)
T KOG0982|consen 231 VQELEDDQNIAGDRSSR----------LKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKE 300 (502)
T ss_pred HHHhhcchhccccchhH----------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHh-----HHHHHHHHHcCCCCCCcccHHHHHHHHHHHHHHHHHHhHhHHHHHhhhhhhhHHHHHHHH
Q 006200 566 NFH-----LEKEVKALKSGGSSVSSPDVEAIKAEAREEAQKESEAELNDLLVCLGQEQSKVEKLSARL 628 (657)
Q Consensus 566 ~~~-----le~e~~~lr~~~~~~~~~~l~~~~~~~~~e~~~~~~~e~~dLl~ll~d~~~K~~~~k~~L 628 (657)
+-+ ++.|+.++|. .+++-....+++.+-.....|+|..+.++..-..+.+.++
T Consensus 301 nlqmr~qqleeentelRs----------~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm 358 (502)
T KOG0982|consen 301 NLQMRDQQLEEENTELRS----------LIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRM 358 (502)
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
No 330
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=55.91 E-value=3e+02 Score=29.93 Aligned_cols=31 Identities=13% Similarity=0.246 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 456 DYVKRLKAFVEKQCSEIQKLLGRNATLAEEL 486 (657)
Q Consensus 456 ~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l 486 (657)
..+..+++-|.+|.+.|.+++.++..|+.++
T Consensus 74 ~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i 104 (301)
T PF06120_consen 74 ANIAKAEESIAAQKRAIEDLQKKIDSLKDQI 104 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666667777777777777666666
No 331
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=55.48 E-value=2.8e+02 Score=29.45 Aligned_cols=19 Identities=16% Similarity=0.041 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006200 468 QCSEIQKLLGRNATLAEEL 486 (657)
Q Consensus 468 Q~~eiq~L~~~~~~L~~~l 486 (657)
...++..++.++..+..++
T Consensus 78 ~~~~l~~a~a~l~~~~~~~ 96 (334)
T TIGR00998 78 AELALAKAEANLAALVRQT 96 (334)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455656666655555544
No 332
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=55.39 E-value=1.7e+02 Score=34.77 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 461 LKAFVEKQCSEIQKLLGRNATLAEELA 487 (657)
Q Consensus 461 lk~~i~~Q~~eiq~L~~~~~~L~~~l~ 487 (657)
|.+.+.+-...-+.|.-++..|++|++
T Consensus 109 yQerLaRLe~dkesL~LQvsvLteqVe 135 (861)
T KOG1899|consen 109 YQERLARLEMDKESLQLQVSVLTEQVE 135 (861)
T ss_pred HHHHHHHHhcchhhheehHHHHHHHHH
Confidence 456666666666778888999999863
No 333
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=55.16 E-value=73 Score=30.78 Aligned_cols=45 Identities=24% Similarity=0.335 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 006200 511 ETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSL 555 (657)
Q Consensus 511 e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~l 555 (657)
.+|.++|......++.|+.|+.+.++..+.......+|+...+.+
T Consensus 30 ~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~ 74 (160)
T PF13094_consen 30 RALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKAL 74 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666666666667666666666666555555555444433
No 334
>PF15456 Uds1: Up-regulated During Septation
Probab=54.98 E-value=1.4e+02 Score=28.23 Aligned_cols=33 Identities=39% Similarity=0.530 Sum_probs=23.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 505 LDRVQVETLRKDLHEASQRLEILKEEKAQIESDS 538 (657)
Q Consensus 505 ~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~ 538 (657)
....+++.|++++..+..+++.++...+ ++...
T Consensus 19 Ls~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~ 51 (124)
T PF15456_consen 19 LSFEEVEELKKELRSLDSRLEYLRRKLA-LESKI 51 (124)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 4467888888888888888887766554 44433
No 335
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=54.44 E-value=1.6e+02 Score=26.22 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHH-HHHHHhHHHhHHHHhHHHHHhHhHHHHHHHH
Q 006200 532 AQIESDSSMYRNLA-AKMESDLKSLSDAYNSLEQTNFHLEKEVKAL 576 (657)
Q Consensus 532 ~~~eae~~~~~~~a-~~le~~l~~ls~~~~~Le~~~~~le~e~~~l 576 (657)
..++..++.++... .+|+..+.+|....+.|.+++.+|..++...
T Consensus 30 sKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e 75 (87)
T PF12709_consen 30 SKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTE 75 (87)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666665443 4577776666666666666655555544443
No 336
>PLN02320 seryl-tRNA synthetase
Probab=53.22 E-value=1.8e+02 Score=33.74 Aligned_cols=61 Identities=15% Similarity=0.236 Sum_probs=35.2
Q ss_pred cccccHHHHHHHHHhHHHHHHhhhhhcCCCCCccccchhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 406 SSMFDKHFVDIIKSLESSIRENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEE 485 (657)
Q Consensus 406 ~v~FD~~Fv~f~K~n~~~I~~ai~~~~~dP~~e~~~~~~~~~~~~~~~s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~ 485 (657)
...+| ++|+++|-..|++.+.. +.-+ .+-+-+-.+-..-++...++++|+.+...+..+
T Consensus 64 ~~mlD---~k~ir~n~~~v~~~l~~--R~~~----------------~~vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~ 122 (502)
T PLN02320 64 KAAID---FKWIRDNKEAVAINIRN--RNSN----------------ANLELVLELYENMLALQKEVERLRAERNAVANK 122 (502)
T ss_pred ccccC---HHHHHhCHHHHHHHHHh--cCCC----------------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678 56678899999988852 1110 111222334455555666666666666666665
Q ss_pred HH
Q 006200 486 LA 487 (657)
Q Consensus 486 l~ 487 (657)
+.
T Consensus 123 i~ 124 (502)
T PLN02320 123 MK 124 (502)
T ss_pred HH
Confidence 53
No 337
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=53.02 E-value=1.6e+02 Score=25.77 Aligned_cols=96 Identities=21% Similarity=0.353 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcCCC
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYR-----NLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGS 581 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~-----~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~~~ 581 (657)
...+....++++.....++.|...+........... .....+..-+..+...+..+..++..++.++..++
T Consensus 4 ~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r---- 79 (123)
T PF02050_consen 4 EQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAR---- 79 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_pred CCCcccH--------------HHHHHHHHHHHHHHHHHhHhHH
Q 006200 582 SVSSPDV--------------EAIKAEAREEAQKESEAELNDL 610 (657)
Q Consensus 582 ~~~~~~l--------------~~~~~~~~~e~~~~~~~e~~dL 610 (657)
..+ +..+...+.+..+.-++.+|++
T Consensus 80 ----~~l~~a~~~~k~~e~L~e~~~~~~~~~~~r~Eq~~lDE~ 118 (123)
T PF02050_consen 80 ----EELQEARRERKKLEKLKERRREEYQQEEERREQKELDEI 118 (123)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 338
>PF15294 Leu_zip: Leucine zipper
Probab=52.96 E-value=2.7e+02 Score=29.94 Aligned_cols=15 Identities=27% Similarity=0.277 Sum_probs=10.7
Q ss_pred CCchHhHHHHHHHhh
Q 006200 305 SATVCTRGLAAVLLG 319 (657)
Q Consensus 305 ~~~~lVqGL~A~LLG 319 (657)
+..-++.|||+++=|
T Consensus 34 EV~~~ldgL~~~v~~ 48 (278)
T PF15294_consen 34 EVTEMLDGLQVVVKS 48 (278)
T ss_pred HHHHHHHHHHHHHHH
Confidence 335667888888777
No 339
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=52.80 E-value=2.4e+02 Score=35.19 Aligned_cols=81 Identities=23% Similarity=0.325 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 461 LKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSM 540 (657)
Q Consensus 461 lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~ 540 (657)
+.+......++|+.++.++..+..++. ..+.++...+..+++.+..+..++.++.+|+.+..+
T Consensus 627 l~~~~~~~ee~~~~~~~~~~~~~~~~r-----------------~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~ 689 (1072)
T KOG0979|consen 627 LEELDNRIEEEIQKLKAEIDIRSSTLR-----------------ELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKS 689 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 455566666667777777666666432 223344455666666666666777777888888888
Q ss_pred HHHHHHHHHHhHHHhHHH
Q 006200 541 YRNLAAKMESDLKSLSDA 558 (657)
Q Consensus 541 ~~~~a~~le~~l~~ls~~ 558 (657)
|++.-.++|.....+..+
T Consensus 690 ~~~r~~~ie~~~~~l~~q 707 (1072)
T KOG0979|consen 690 YQQRKERIENLVVDLDRQ 707 (1072)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 877777777655555533
No 340
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=52.43 E-value=56 Score=35.73 Aligned_cols=19 Identities=5% Similarity=0.267 Sum_probs=9.7
Q ss_pred HHhhcch-hhHHHHHHHHhc
Q 006200 341 ISQKVGL-TSYFLKFDEMQK 359 (657)
Q Consensus 341 I~~RiG~-d~y~~kl~~lr~ 359 (657)
..+-++. ++|+++|..|-+
T Consensus 145 ak~~l~~~~~Fl~~L~~fd~ 164 (344)
T PF12777_consen 145 AKKLLSDSDNFLQRLKNFDK 164 (344)
T ss_dssp HHCHHCSSTTHHHHHHHS-G
T ss_pred HHHHHHhHHHHHHHHHhhcc
Confidence 3344454 466666666544
No 341
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=52.37 E-value=2.3e+02 Score=27.59 Aligned_cols=52 Identities=13% Similarity=0.225 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 526 ILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 526 ~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
+++..+..+..++.-+.+...+-|.+++..-.+||+...+...|-..+-+|=
T Consensus 88 ~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv 139 (159)
T PF04949_consen 88 MVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELV 139 (159)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444555556667777777777777777777777666666655553
No 342
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=52.33 E-value=59 Score=32.32 Aligned_cols=7 Identities=29% Similarity=0.335 Sum_probs=2.8
Q ss_pred HHHHHhc
Q 006200 353 KFDEMQK 359 (657)
Q Consensus 353 kl~~lr~ 359 (657)
.+.++.+
T Consensus 65 s~~~~~k 71 (192)
T PF05529_consen 65 SIRRMYK 71 (192)
T ss_pred HHHHHHH
Confidence 3444443
No 343
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=51.65 E-value=1.1e+02 Score=34.86 Aligned_cols=69 Identities=23% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCCC------cchhhhhhccccHHHHHHHHHHHHHHHHHHH
Q 006200 457 YVKRLKAFVEKQCSEI-QKLLGRNATLAEELAKIGGDGA------SQSEQRASGALDRVQVETLRKDLHEASQRLE 525 (657)
Q Consensus 457 ~v~~lk~~i~~Q~~ei-q~L~~~~~~L~~~l~~~~~~~~------~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e 525 (657)
.+..+|..|..+...| +.+..........+.+...... +.+...........+++.||++|..+++.+.
T Consensus 93 ~i~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Ev~~LRreLavLRQl~~ 168 (424)
T PF03915_consen 93 EIEELKQELDEQQETILQRVKERQQSAAKPVARPAAAPPPSSAPSSSSSPQSTSKSDLKEVQSLRRELAVLRQLYS 168 (424)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCcccccccCcCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777 5544443333332222221110 0001111112235678888888877776544
No 344
>PRK14147 heat shock protein GrpE; Provisional
Probab=51.59 E-value=70 Score=31.77 Aligned_cols=42 Identities=12% Similarity=0.225 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006200 510 VETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESD 551 (657)
Q Consensus 510 ~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~ 551 (657)
.+.|..+++.++++++.+++...++.|+.++|++...+-..+
T Consensus 20 ~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~ 61 (172)
T PRK14147 20 TDPLKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQ 61 (172)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667777777778888888889999999988776665533
No 345
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=51.40 E-value=85 Score=27.75 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=10.9
Q ss_pred HhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 554 SLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 554 ~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
+|+..+++|..+..++..+++.+|
T Consensus 28 qLss~V~~L~~kvdql~~dv~~a~ 51 (85)
T PRK09973 28 QLASNVQTLNAKIARLEQDMKALR 51 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444445555554
No 346
>PRK11519 tyrosine kinase; Provisional
Probab=51.22 E-value=1.8e+02 Score=35.03 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006200 508 VQVETLRKDLHEASQRLEILKE 529 (657)
Q Consensus 508 ~q~e~L~~~L~~~~~~~e~l~~ 529 (657)
.|+..++++|+++.+.++..+.
T Consensus 274 ~ql~~l~~~L~~aE~~l~~fr~ 295 (719)
T PRK11519 274 QQLPEVRSRLDVAENKLNAFRQ 295 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 347
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=51.17 E-value=1.2e+02 Score=28.84 Aligned_cols=60 Identities=13% Similarity=0.149 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcC
Q 006200 520 ASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSG 579 (657)
Q Consensus 520 ~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~ 579 (657)
++.+-...+.++..|+.|-+.++..+..||.+.+++.--...|-..+.-||..++..|..
T Consensus 9 LQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k 68 (134)
T PF08232_consen 9 LQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAK 68 (134)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444568888999999999999999999999988777777777788788877777753
No 348
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=51.10 E-value=3.5e+02 Score=29.21 Aligned_cols=20 Identities=5% Similarity=-0.074 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006200 467 KQCSEIQKLLGRNATLAEEL 486 (657)
Q Consensus 467 ~Q~~eiq~L~~~~~~L~~~l 486 (657)
....++.+++.++...+.++
T Consensus 83 ~~~~~l~~a~a~l~~a~a~l 102 (346)
T PRK10476 83 PYELTVAQAQADLALADAQI 102 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666665544
No 349
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=51.02 E-value=61 Score=29.74 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcC
Q 006200 538 SSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSG 579 (657)
Q Consensus 538 ~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~ 579 (657)
+..+.+.+..|-.++..|+..+..|..+|.+|.-|+..||+.
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~ 51 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRER 51 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555556666666667777777777777753
No 350
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=50.98 E-value=1.6e+02 Score=28.71 Aligned_cols=19 Identities=32% Similarity=0.165 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006200 462 KAFVEKQCSEIQKLLGRNA 480 (657)
Q Consensus 462 k~~i~~Q~~eiq~L~~~~~ 480 (657)
|+.+.....++..++.++.
T Consensus 19 K~~~~~~~~e~~~~k~ql~ 37 (155)
T PF06810_consen 19 KAKVDKVKEERDNLKTQLK 37 (155)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 351
>COG5283 Phage-related tail protein [Function unknown]
Probab=50.96 E-value=4.3e+02 Score=33.76 Aligned_cols=25 Identities=12% Similarity=0.072 Sum_probs=20.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 454 DKDYVKRLKAFVEKQCSEIQKLLGR 478 (657)
Q Consensus 454 s~~~v~~lk~~i~~Q~~eiq~L~~~ 478 (657)
.-.-+.+|++-|+.+.+.-+.++.+
T Consensus 20 ~~~~in~L~ssi~~~~~~~k~~e~q 44 (1213)
T COG5283 20 AVKNINVLKSSIKDSTQFWKMLEKQ 44 (1213)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4455667999999999998888777
No 352
>PRK02119 hypothetical protein; Provisional
Probab=50.82 E-value=79 Score=26.95 Aligned_cols=12 Identities=33% Similarity=0.274 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 006200 474 KLLGRNATLAEE 485 (657)
Q Consensus 474 ~L~~~~~~L~~~ 485 (657)
.+.+|+..|+.+
T Consensus 6 ~~e~Ri~~LE~r 17 (73)
T PRK02119 6 NLENRIAELEMK 17 (73)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 353
>PHA02414 hypothetical protein
Probab=50.67 E-value=87 Score=28.29 Aligned_cols=45 Identities=18% Similarity=0.269 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 534 IESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 534 ~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
++.+++.++..+..+..++.=-+.+++.+--++-+|++.+.+|++
T Consensus 34 L~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~i~aL~~ 78 (111)
T PHA02414 34 LEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEKISALAE 78 (111)
T ss_pred HHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHHHHHHh
Confidence 444555556666666666665667777777788888888888875
No 354
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=50.63 E-value=3.7e+02 Score=33.28 Aligned_cols=43 Identities=21% Similarity=0.196 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKME 549 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le 549 (657)
+....++++.++.....++.++...+.+++.++.++....++-
T Consensus 556 rq~~~~~r~~ld~leaa~e~lE~r~~~~e~~~~e~~se~e~~l 598 (984)
T COG4717 556 RQHWQQLRKALDQLEAAYEALEGRFAAAEAAMAEWQSEWEEAL 598 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4455677888888888888888888888888888666555543
No 355
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=50.56 E-value=3.4e+02 Score=28.97 Aligned_cols=68 Identities=22% Similarity=0.247 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHH
Q 006200 509 QVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKAL 576 (657)
Q Consensus 509 q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~l 576 (657)
+.+..+++|+......+.+..++++.+.++...+..+.++...|..|.+.-..+...+..+...++..
T Consensus 194 eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 194 EKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445566666666666666677777777777777776666665555554444444444444444433
No 356
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=50.40 E-value=2.4e+02 Score=28.59 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006200 526 ILKEEKAQIESDSSMYRNLAAKMESDLK 553 (657)
Q Consensus 526 ~l~~e~~~~eae~~~~~~~a~~le~~l~ 553 (657)
.|+++|+.++..+..-+.-+.+|+.||.
T Consensus 109 ~LeAQka~~eR~ia~~~~ra~~LqaDl~ 136 (192)
T PF11180_consen 109 QLEAQKAQLERLIAESEARANRLQADLQ 136 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444544443
No 357
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=50.29 E-value=1.4e+02 Score=24.40 Aligned_cols=31 Identities=13% Similarity=0.376 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 510 VETLRKDLHEASQRLEILKEEKAQIESDSSM 540 (657)
Q Consensus 510 ~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~ 540 (657)
+++|..++.+++....+|..+...+++++..
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ 35 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQA 35 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443333
No 358
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=50.26 E-value=4.6e+02 Score=33.17 Aligned_cols=40 Identities=18% Similarity=0.070 Sum_probs=22.5
Q ss_pred HHHHHHhHhHHHHHhhhhhhhHHHHHHHHHHcCchhhhhh
Q 006200 600 QKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVEKLL 639 (657)
Q Consensus 600 ~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~lg~~v~~~~ 639 (657)
+...++.+++|+........-.+..+..+..+-..+..+.
T Consensus 418 ver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~ 457 (1141)
T KOG0018|consen 418 VERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAE 457 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhh
Confidence 3455666666666666555555555555555555554443
No 359
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=49.76 E-value=56 Score=37.40 Aligned_cols=6 Identities=17% Similarity=0.490 Sum_probs=2.2
Q ss_pred HHHHHH
Q 006200 513 LRKDLH 518 (657)
Q Consensus 513 L~~~L~ 518 (657)
|+++|+
T Consensus 81 LEKqLa 86 (475)
T PRK13729 81 MQKQYE 86 (475)
T ss_pred HHHHHH
Confidence 333333
No 360
>PRK04406 hypothetical protein; Provisional
Probab=49.51 E-value=1e+02 Score=26.40 Aligned_cols=11 Identities=27% Similarity=0.145 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 006200 475 LLGRNATLAEE 485 (657)
Q Consensus 475 L~~~~~~L~~~ 485 (657)
+.+|+..|+.+
T Consensus 9 le~Ri~~LE~~ 19 (75)
T PRK04406 9 LEERINDLECQ 19 (75)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 361
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=49.49 E-value=2.5e+02 Score=28.40 Aligned_cols=19 Identities=16% Similarity=0.050 Sum_probs=11.3
Q ss_pred cHHHHHHHHHHHHHHHHHH
Q 006200 454 DKDYVKRLKAFVEKQCSEI 472 (657)
Q Consensus 454 s~~~v~~lk~~i~~Q~~ei 472 (657)
-..+..+|..++.-++...
T Consensus 88 V~~l~~RL~kLL~lk~~~~ 106 (190)
T PF05266_consen 88 VKFLRSRLNKLLSLKDDQE 106 (190)
T ss_pred cHHHHHHHHHHHHHHHhHH
Confidence 3446666777666665544
No 362
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=49.49 E-value=4.9e+02 Score=30.39 Aligned_cols=27 Identities=11% Similarity=0.078 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 458 VKRLKAFVEKQCSEIQKLLGRNATLAE 484 (657)
Q Consensus 458 v~~lk~~i~~Q~~eiq~L~~~~~~L~~ 484 (657)
-..|...|.+--.++|....+......
T Consensus 415 k~~Y~~RI~eLt~qlQ~adSKa~~f~~ 441 (518)
T PF10212_consen 415 KSYYMSRIEELTSQLQHADSKAVHFYA 441 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666555555444443
No 363
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=49.44 E-value=3e+02 Score=27.90 Aligned_cols=71 Identities=17% Similarity=0.248 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMES--------DLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~--------~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
..++..|+.+|-..+.....++..+...+.++-..+.....++. +-..|+..+..++.....-+..++.|.
T Consensus 67 ~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Le 145 (194)
T PF15619_consen 67 NEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELE 145 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666665555555555444444444444444444442 122334444444444444444444443
No 364
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=49.36 E-value=6.6e+02 Score=31.89 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=9.2
Q ss_pred HHHHhhcCChhhHHHHHhhh
Q 006200 141 IFNSFCEKNPDGQAMLTSTL 160 (657)
Q Consensus 141 cf~ayl~~N~~~q~~L~~tl 160 (657)
=|..|+...+.-|..|...|
T Consensus 157 ~f~~fl~a~~~eR~~il~~l 176 (1047)
T PRK10246 157 QFAAFLNAKPKERAELLEEL 176 (1047)
T ss_pred cHHHHHhCChHHHHHHHHHH
Confidence 34455555544444444333
No 365
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=49.12 E-value=6.6e+02 Score=31.86 Aligned_cols=32 Identities=19% Similarity=0.362 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHH
Q 006200 534 IESDSSMYRNLAAKMESDLKSLSDAYNSLEQT 565 (657)
Q Consensus 534 ~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~ 565 (657)
.+..+...+..+.+++.++..++.++..+|.+
T Consensus 315 ~kk~~~~~~~~ie~~ek~l~av~~~~~~feke 346 (1141)
T KOG0018|consen 315 AKKDYRALKETIERLEKELKAVEGAKEEFEKE 346 (1141)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555444444433
No 366
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=49.07 E-value=57 Score=29.71 Aligned_cols=35 Identities=11% Similarity=0.093 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 509 QVETLRKDLHEASQRLEILKEEKAQIESDSSMYRN 543 (657)
Q Consensus 509 q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~ 543 (657)
....+++++++++++++.++++++.++.+++.++.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 44556667777777777777777777777666554
No 367
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=49.02 E-value=2.3e+02 Score=32.12 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 006200 471 EIQKLLGRNATLAEEL 486 (657)
Q Consensus 471 eiq~L~~~~~~L~~~l 486 (657)
.|++|+++...+..++
T Consensus 286 ~i~~Lr~~~~~~~~~~ 301 (458)
T COG3206 286 TIQDLRQQYAQVRQQI 301 (458)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555554444443
No 368
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=48.98 E-value=2.7e+02 Score=27.39 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006200 509 QVETLRKDLHEASQRLE 525 (657)
Q Consensus 509 q~e~L~~~L~~~~~~~e 525 (657)
+...++.+.+.++...+
T Consensus 74 ~~~~lr~~~e~L~~eie 90 (177)
T PF07798_consen 74 EFAELRSENEKLQREIE 90 (177)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 369
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=48.55 E-value=1.1e+02 Score=34.46 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=20.2
Q ss_pred HHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 546 AKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 546 ~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
+++....+.+..++..|+++...+++++.++-.
T Consensus 72 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 104 (418)
T TIGR00414 72 EEIKKELKELKEELTELSAALKALEAELQDKLL 104 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666677777777776655543
No 370
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=48.27 E-value=4.4e+02 Score=32.23 Aligned_cols=13 Identities=23% Similarity=0.306 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHhh
Q 006200 239 LMHRMVRYLALAS 251 (657)
Q Consensus 239 ll~~i~~~l~~a~ 251 (657)
|+.|||+++.+..
T Consensus 252 LLkCiQt~lsll~ 264 (861)
T PF15254_consen 252 LLKCIQTHLSLLQ 264 (861)
T ss_pred HHHHHHHHHHHHH
Confidence 7888888887543
No 371
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=47.99 E-value=3.7e+02 Score=28.58 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006200 507 RVQVETLRKDLHEASQRLE 525 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e 525 (657)
..|+..|.++|+.++...+
T Consensus 119 ~vqIa~L~rqlq~lk~~qq 137 (258)
T PF15397_consen 119 AVQIANLVRQLQQLKDSQQ 137 (258)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5688899999988776543
No 372
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=47.29 E-value=4.1e+02 Score=29.40 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHh
Q 006200 517 LHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFH 568 (657)
Q Consensus 517 L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~ 568 (657)
+.-+-..+..+.+++..+..+.+.++..+.++...+.++-.+.+.+|.+++.
T Consensus 132 ~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~ 183 (342)
T PF06632_consen 132 FDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYA 183 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555666666666666666677776666666666666666654
No 373
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=47.00 E-value=2.2e+02 Score=28.91 Aligned_cols=12 Identities=33% Similarity=0.542 Sum_probs=5.2
Q ss_pred HhHhHHHHHhhh
Q 006200 605 AELNDLLVCLGQ 616 (657)
Q Consensus 605 ~e~~dLl~ll~d 616 (657)
.|+-+|-+.|.+
T Consensus 132 ~eLKElcl~LDe 143 (195)
T PF10226_consen 132 LELKELCLYLDE 143 (195)
T ss_pred HHHHHHHHHHhc
Confidence 344444444443
No 374
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=46.94 E-value=1.4e+02 Score=31.58 Aligned_cols=33 Identities=12% Similarity=0.182 Sum_probs=22.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 454 DKDYVKRLKAFVEKQCSEIQKLLGRNATLAEEL 486 (657)
Q Consensus 454 s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l 486 (657)
...-+.+|...+..+.+-+-+|.+++..|+.++
T Consensus 38 ~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev 70 (263)
T PRK10803 38 VEDRVTQLERISNAHSQLLTQLQQQLSDNQSDI 70 (263)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 344456677777777777777777877777754
No 375
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=46.75 E-value=3.3e+02 Score=27.67 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006200 466 EKQCSEIQKLLGRNATLAEE 485 (657)
Q Consensus 466 ~~Q~~eiq~L~~~~~~L~~~ 485 (657)
.+|...+.+..-+-..|+.+
T Consensus 94 ~~Qt~~LA~~eirR~~LeAQ 113 (192)
T PF11180_consen 94 AQQTARLADVEIRRAQLEAQ 113 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555554444444443
No 376
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=46.71 E-value=2.9e+02 Score=27.08 Aligned_cols=31 Identities=13% Similarity=0.194 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhHHHHhHH
Q 006200 532 AQIESDSSMYRNLAAKMESDLKSLSDAYNSL 562 (657)
Q Consensus 532 ~~~eae~~~~~~~a~~le~~l~~ls~~~~~L 562 (657)
..|+.+..++...+..++...+.|......+
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~ 115 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLKNL 115 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3455555555555555555555555443333
No 377
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.95 E-value=24 Score=39.26 Aligned_cols=30 Identities=17% Similarity=0.098 Sum_probs=17.6
Q ss_pred HHHhHhHHHHHhhhhhhhHHHHHHHHHHcC
Q 006200 603 SEAELNDLLVCLGQEQSKVEKLSARLLELG 632 (657)
Q Consensus 603 ~~~e~~dLl~ll~d~~~K~~~~k~~L~~lg 632 (657)
..+=-+-+--||.++..--..-.+|+-.+.
T Consensus 233 ~~k~td~~~~~l~~~~~~tp~s~~r~~~~n 262 (514)
T KOG3130|consen 233 MHKVTDSHTPCLKDVASSTPFSGQRNSQLN 262 (514)
T ss_pred hhhhhcccchHhhcCCCcCcchhhhhhccc
Confidence 333444566677777766666666665543
No 378
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=45.94 E-value=2.4e+02 Score=25.83 Aligned_cols=28 Identities=25% Similarity=0.250 Sum_probs=11.3
Q ss_pred HHHHHhHHHhHHHHhHHHHHhHhHHHHH
Q 006200 546 AKMESDLKSLSDAYNSLEQTNFHLEKEV 573 (657)
Q Consensus 546 ~~le~~l~~ls~~~~~Le~~~~~le~e~ 573 (657)
.+++.++.+|+=+..+|+.++..+..|+
T Consensus 43 Rk~eqE~dSL~FrN~QL~kRV~~LQ~El 70 (102)
T PF10205_consen 43 RKLEQENDSLTFRNQQLTKRVEVLQEEL 70 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344343344444344444444444433
No 379
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=45.94 E-value=1.3e+02 Score=32.46 Aligned_cols=43 Identities=23% Similarity=0.353 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKME 549 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le 549 (657)
+.+-|+|..+++.+.+++++|+++...++.|+.-+|+.+.+..
T Consensus 247 Rae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 247 RAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888888888888888888888888777776554
No 380
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=45.83 E-value=3.6e+02 Score=27.80 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 458 VKRLKAFVEKQCSEIQKLLGRNATLAE 484 (657)
Q Consensus 458 v~~lk~~i~~Q~~eiq~L~~~~~~L~~ 484 (657)
.+.|+..|..=-.+|..++.++..++.
T Consensus 40 ~~~~~~~i~~aP~~~~~l~~~l~~l~~ 66 (240)
T PF12795_consen 40 AAEYQKQIDQAPKEIRELQKELEALKS 66 (240)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhc
Confidence 344555555555555555555555544
No 381
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.75 E-value=1.9e+02 Score=31.90 Aligned_cols=16 Identities=0% Similarity=0.152 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 006200 455 KDYVKRLKAFVEKQCS 470 (657)
Q Consensus 455 ~~~v~~lk~~i~~Q~~ 470 (657)
.+++..+++.++...+
T Consensus 209 asvisa~~eklR~r~e 224 (365)
T KOG2391|consen 209 ASVISAVREKLRRRRE 224 (365)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556556666555433
No 382
>PRK14145 heat shock protein GrpE; Provisional
Probab=45.63 E-value=2.6e+02 Score=28.47 Aligned_cols=47 Identities=15% Similarity=0.267 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLK 553 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~ 553 (657)
..+++.|+.+++++...+..+++...++.|+.++||..+.+-..+..
T Consensus 44 ~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~ 90 (196)
T PRK14145 44 VDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMV 90 (196)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888888999999999998887776654433
No 383
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=45.61 E-value=6e+02 Score=30.39 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=19.1
Q ss_pred HHHHHhHhHHHHHhhhhhhhHHHHHHHH
Q 006200 601 KESEAELNDLLVCLGQEQSKVEKLSARL 628 (657)
Q Consensus 601 ~~~~~e~~dLl~ll~d~~~K~~~~k~~L 628 (657)
..++..+|.+|.-=.+.|.+++.++.-|
T Consensus 277 ~~lk~a~eslm~ane~kdr~ie~lr~~l 304 (861)
T KOG1899|consen 277 NTLKNALESLMRANEQKDRFIESLRNYL 304 (861)
T ss_pred HHHHHHHHHHHhhchhhhhHHHHHHHHh
Confidence 3566677777777777777777666644
No 384
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=45.60 E-value=2.5e+02 Score=33.89 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006200 455 KDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKI 489 (657)
Q Consensus 455 ~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~ 489 (657)
.+-+..|+..+..-..++..|+.++..|+.+|++.
T Consensus 502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~ 536 (722)
T PF05557_consen 502 SEELNELQKEIEELERENERLRQELEELESELEKL 536 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677799999999999999999999999999873
No 385
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=45.37 E-value=3.3e+02 Score=32.95 Aligned_cols=25 Identities=20% Similarity=0.569 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEK 531 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~ 531 (657)
..|+..++++|+++.++++..+.+.
T Consensus 273 ~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 273 QRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5566677777777777666665544
No 386
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=45.30 E-value=2.3e+02 Score=25.53 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 524 LEILKEEKAQIESDSSMYRNLAAKME 549 (657)
Q Consensus 524 ~e~l~~e~~~~eae~~~~~~~a~~le 549 (657)
+..|..||+.++-|+..|+..+.+-.
T Consensus 40 I~RLQ~EKAa~~mEA~Qy~Rm~EEk~ 65 (94)
T PF04576_consen 40 ILRLQEEKAAVEMEARQYQRMAEEKA 65 (94)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44567778888888888777766543
No 387
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=45.05 E-value=6.7e+02 Score=30.74 Aligned_cols=140 Identities=18% Similarity=0.205 Sum_probs=80.8
Q ss_pred cccccccHHHHHHHHHhHHHHHHhhhhh-cCCCC----CccccchhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 404 LLSSMFDKHFVDIIKSLESSIRENIVDV-YSRPK----SEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLGR 478 (657)
Q Consensus 404 l~~v~FD~~Fv~f~K~n~~~I~~ai~~~-~~dP~----~e~~~~~~~~~~~~~~~s~~~v~~lk~~i~~Q~~eiq~L~~~ 478 (657)
...++-|...++-+.+...++..+--.. |..-. +....+.+.++ .+++-..+||.....-.+..+.++++
T Consensus 882 ql~ll~dE~L~dRveE~~E~L~~a~e~~~fI~qhG~tls~LEpia~~Lq-----sDPe~~e~L~~~y~qA~~~q~q~~qq 956 (1480)
T COG3096 882 QLNLLADESLADRVEEIRERLDEAQEAARFIQQHGNTLSKLEPIASVLQ-----SDPEQFEQLKEDYAQAQQMQRQARQQ 956 (1480)
T ss_pred hhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHhhhhHHHHHh-----CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888877777666554332110 11111 11112233343 47888888998888777777888888
Q ss_pred HHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 479 NATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMES 550 (657)
Q Consensus 479 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~ 550 (657)
+=.|+.-+.+..--.-+.+.+-. .....=.++|++.|+++.++.+.-+.++++.++....|......+++
T Consensus 957 ~FAL~dv~qRr~HF~Y~ds~~~l--~e~sdLnekLr~rL~q~eaeR~~~reqlrQ~Q~Q~sqYnqvl~~Lks 1026 (1480)
T COG3096 957 AFALTEVVQRRAHFSYSDSAEML--SENSDLNEKLRQRLEQAEAERTRAREQLRQHQAQLSQYNQVLASLKS 1026 (1480)
T ss_pred HHHHHHHHHhhcccccchhhhhh--cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888755443321111110000 01112346788888888877776676777777777666665555553
No 388
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=44.81 E-value=3.4e+02 Score=27.23 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHh
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYN 560 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~ 560 (657)
...+.-|+.||+++...+++|..++.++..+...++.-...-|.....-..+++
T Consensus 80 ~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~ 133 (182)
T PF15035_consen 80 AQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFN 133 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455899999999999999999998888888866655555544443333333
No 389
>PF14992 TMCO5: TMCO5 family
Probab=44.71 E-value=4.3e+02 Score=28.42 Aligned_cols=25 Identities=16% Similarity=0.119 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 461 LKAFVEKQCSEIQKLLGRNATLAEE 485 (657)
Q Consensus 461 lk~~i~~Q~~eiq~L~~~~~~L~~~ 485 (657)
+=-.|.+...+||.|..+++.+...
T Consensus 23 lL~ki~~~E~~iq~Le~Eit~~~~~ 47 (280)
T PF14992_consen 23 LLQKIQEKEGAIQSLEREITKMDHI 47 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3456777777787777777766664
No 390
>PRK14011 prefoldin subunit alpha; Provisional
Probab=44.68 E-value=3e+02 Score=26.60 Aligned_cols=21 Identities=14% Similarity=0.063 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006200 458 VKRLKAFVEKQCSEIQKLLGR 478 (657)
Q Consensus 458 v~~lk~~i~~Q~~eiq~L~~~ 478 (657)
...|+.+++.-...|+.|+.-
T Consensus 12 l~~~~~qie~L~~si~~L~~a 32 (144)
T PRK14011 12 LEVYNQQVQKLQEELSSIDMM 32 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544443
No 391
>PRK14153 heat shock protein GrpE; Provisional
Probab=44.24 E-value=53 Score=33.30 Aligned_cols=42 Identities=17% Similarity=0.257 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 509 QVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMES 550 (657)
Q Consensus 509 q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~ 550 (657)
++..+..++++++++++.+++...++.|+.++|++...+-..
T Consensus 34 ~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e 75 (194)
T PRK14153 34 EDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREME 75 (194)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777778888888888888888877765553
No 392
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=44.23 E-value=57 Score=37.94 Aligned_cols=96 Identities=15% Similarity=0.189 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 463 AFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQV--------ETLRKDLHEASQRLEILKEEKAQI 534 (657)
Q Consensus 463 ~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~--------e~L~~~L~~~~~~~e~l~~e~~~~ 534 (657)
..=.++.-+++-|+.+|..|..+.+++.. .+.|. ++|.++-.++.+..+.++-..+.+
T Consensus 47 ~EnqEhevELElLrEDNEQl~tqYErEka--------------lR~q~eqKfie~eD~Le~~~kel~~k~e~~e~~~r~L 112 (832)
T KOG2077|consen 47 SENQEHEVELELLREDNEQLITQYEREKA--------------LRTQLEQKFIEGEDQLESTAKELIRKEEPIELGIRPL 112 (832)
T ss_pred hccchhHHHHHHHhhhHHHHHHHHHHHHH--------------HHHHHHhhhcchHHHHHhhHHHHHhhhcchhheeeee
Confidence 34467778888899999999888876661 12222 234444444555555555566777
Q ss_pred HHHHHHHHHHHHHHHH-------hHHHhHHHHhHHHHHhHhHHHH
Q 006200 535 ESDSSMYRNLAAKMES-------DLKSLSDAYNSLEQTNFHLEKE 572 (657)
Q Consensus 535 eae~~~~~~~a~~le~-------~l~~ls~~~~~Le~~~~~le~e 572 (657)
+..+.+|---|++++. +...|+.+|+.+-+.+..+-++
T Consensus 113 elkakn~td~asrleEre~e~k~ef~~LhqR~tem~rthv~h~er 157 (832)
T KOG2077|consen 113 ELKAKNLTDDASRLEEREGEEKWEFQELHQRHTEMPRTHVSHKER 157 (832)
T ss_pred ccccccccchhhhhcccchHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 7777777667776664 5666777777776665555444
No 393
>PRK14158 heat shock protein GrpE; Provisional
Probab=44.18 E-value=92 Score=31.58 Aligned_cols=49 Identities=14% Similarity=0.141 Sum_probs=40.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006200 505 LDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLK 553 (657)
Q Consensus 505 ~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~ 553 (657)
....+++.|+.+++++.++++.+++...++.|+.++|++...+-..+..
T Consensus 37 ~~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~ 85 (194)
T PRK14158 37 AAADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELL 85 (194)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778899999999999999999999999999999888777664444
No 394
>PRK14148 heat shock protein GrpE; Provisional
Probab=44.16 E-value=90 Score=31.70 Aligned_cols=46 Identities=17% Similarity=0.238 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDL 552 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l 552 (657)
..+++.|+.+++.+...++.+++...++.|+.++|++...+-..+.
T Consensus 39 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~ 84 (195)
T PRK14148 39 EEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNA 84 (195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888888999999999887766655443
No 395
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.01 E-value=1.4e+02 Score=34.57 Aligned_cols=126 Identities=19% Similarity=0.226 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHhhHhccCCCCCCC------CCccc-hhhhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHH
Q 006200 22 QKTINLLSALETINLLIVRGSEADP------GKDAH-KLTNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDII 94 (657)
Q Consensus 22 Qk~~N~~~~L~ivrllV~~g~~~~~------~~~~~-~~~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlI 94 (657)
+.+.+..++--.|+|+.+|...... |+-++ .+.+.....++|++..||++... ..+..++-.+.-|+..+.
T Consensus 146 ~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~--~~~~~~lRn~tW~LsNlc 223 (514)
T KOG0166|consen 146 KVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNK--SDKLSMLRNATWTLSNLC 223 (514)
T ss_pred cccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhcc--ccchHHHHHHHHHHHHHH
Confidence 4556666666778888887432100 00000 03577788999999999999883 245678888899999999
Q ss_pred hcChhhHHHhhccccCCCC--ccchHHHHHHHHHhccCchhHHhHHHHHHHHhhcC--ChhhHHHHHhhhcC
Q 006200 95 AAHPKNRDVLASKVLGEEP--QVEAALNSILRIILRTSSMQEFLAADRIFNSFCEK--NPDGQAMLTSTLIP 162 (657)
Q Consensus 95 rgn~~nQ~~fa~~~vp~~p--~~~pal~~LL~~~L~~~~~~~r~AA~~cf~ayl~~--N~~~q~~L~~tl~p 162 (657)
||-. |++| ...|++-+|+. .++..+.....=|++.+ +|+.+ |+-+|..+...+.|
T Consensus 224 rgk~-----------P~P~~~~v~~iLp~L~~-ll~~~D~~Vl~Da~WAl-syLsdg~ne~iq~vi~~gvv~ 282 (514)
T KOG0166|consen 224 RGKN-----------PSPPFDVVAPILPALLR-LLHSTDEEVLTDACWAL-SYLTDGSNEKIQMVIDAGVVP 282 (514)
T ss_pred cCCC-----------CCCcHHHHHHHHHHHHH-HHhcCCHHHHHHHHHHH-HHHhcCChHHHHHHHHccchH
Confidence 9853 4322 13555555544 44666665554444444 46664 56666766665554
No 396
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=43.92 E-value=5.7e+02 Score=29.59 Aligned_cols=34 Identities=12% Similarity=0.086 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhHhHHHHHhhhhhhhHHHHHHHH
Q 006200 595 AREEAQKESEAELNDLLVCLGQEQSKVEKLSARL 628 (657)
Q Consensus 595 ~~~e~~~~~~~e~~dLl~ll~d~~~K~~~~k~~L 628 (657)
+...+....+..+..-+.-|.++..++..--..|
T Consensus 158 ~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nL 191 (475)
T PRK10361 158 DSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINL 191 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666667666777777777777766666
No 397
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=43.88 E-value=6.7e+02 Score=30.38 Aligned_cols=41 Identities=27% Similarity=0.310 Sum_probs=32.6
Q ss_pred HHHHHHHHhHhHHHHHhhhhhhhHHHHHHHHHHcCchhhhh
Q 006200 598 EAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVEKL 638 (657)
Q Consensus 598 e~~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~lg~~v~~~ 638 (657)
.+++..+.|..+|=..-.+++.+...+..-+..+|.....-
T Consensus 507 ~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~A 547 (739)
T PF07111_consen 507 RAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAA 547 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55777888888898888899999988888888777665543
No 398
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=43.49 E-value=7.4e+02 Score=30.79 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 456 DYVKRLKAFVEKQCSEIQKLLGRNA 480 (657)
Q Consensus 456 ~~v~~lk~~i~~Q~~eiq~L~~~~~ 480 (657)
.+...+++.++.-...+..++.++.
T Consensus 171 ~~~~~l~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 171 KLSELLKEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555544
No 399
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=43.15 E-value=64 Score=24.89 Aligned_cols=52 Identities=19% Similarity=0.107 Sum_probs=34.5
Q ss_pred HhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchhHHhHHHHHHH
Q 006200 81 AVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAADRIFN 143 (657)
Q Consensus 81 ~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~~r~AA~~cf~ 143 (657)
.||..|+.++|.+..+.+.....+ .|-+...|.-+|...+...|.+|++++.
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~-----------~~~~~~~L~~~L~d~~~~VR~~A~~aLg 53 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPY-----------LPELLPALIPLLQDDDDSVRAAAAWALG 53 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHH-----------HHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHH-----------HHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 689999999998665554332221 3334445555666666688999998875
No 400
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=43.13 E-value=5.5e+02 Score=29.23 Aligned_cols=100 Identities=26% Similarity=0.361 Sum_probs=63.0
Q ss_pred CcHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHH
Q 006200 453 SDKDYVKRLKAFVEKQCSEI----QKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILK 528 (657)
Q Consensus 453 ~s~~~v~~lk~~i~~Q~~ei----q~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~ 528 (657)
..|.|+++=|..+...+..| .+|+.-+..|..++.+-+- | ....+++.+..++..+.+.++.++
T Consensus 199 ~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~Rgv--------R----p~~~qle~v~kdi~~a~~~L~~m~ 266 (424)
T PF03915_consen 199 SNRAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGV--------R----PSPKQLETVAKDISRASKELKKMK 266 (424)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------c----CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889988888877776544 4566666666666655541 1 336788888888888888777655
Q ss_pred HHH--------HHHHHHHHHH----------HHHHHHHHHhHHHhHHHHhHHHH
Q 006200 529 EEK--------AQIESDSSMY----------RNLAAKMESDLKSLSDAYNSLEQ 564 (657)
Q Consensus 529 ~e~--------~~~eae~~~~----------~~~a~~le~~l~~ls~~~~~Le~ 564 (657)
.-. ..||+|+... ...+..|+.|+++++.-+..+++
T Consensus 267 ~~i~~~kp~WkKiWE~EL~~V~eEQqfL~~QedL~~DL~eDl~k~~etf~lveq 320 (424)
T PF03915_consen 267 EYIKTEKPIWKKIWESELQKVCEEQQFLKLQEDLLSDLKEDLKKASETFALVEQ 320 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 6677776653 23445555566666666666654
No 401
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=42.84 E-value=88 Score=32.27 Aligned_cols=7 Identities=14% Similarity=0.074 Sum_probs=2.8
Q ss_pred HHHHHHh
Q 006200 352 LKFDEMQ 358 (657)
Q Consensus 352 ~kl~~lr 358 (657)
+.+.+++
T Consensus 61 Dsvr~i~ 67 (216)
T KOG1962|consen 61 DSVRRIQ 67 (216)
T ss_pred HHHHHHH
Confidence 3344444
No 402
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=42.84 E-value=95 Score=28.47 Aligned_cols=78 Identities=15% Similarity=0.126 Sum_probs=54.9
Q ss_pred chhHHHHHHHHHHHhhHhccCCCCCCCCCccchhhhHHHHHh-h------cHHH----HHHHH-----HhccCCCchHhH
Q 006200 20 TQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQ-K------KALD----NLLML-----AVESQWAPVAVR 83 (657)
Q Consensus 20 ~~Qk~~N~~~~L~ivrllV~~g~~~~~~~~~~~~~nQ~~l~q-~------glL~----~ll~L-----a~~s~~~p~~Ir 83 (657)
..|+...+..+|.++++|..+.+. ..|.-|.. . .++. .+..+ .+. ..-..+-
T Consensus 3 ~~~~~~~~~~ilr~LQLlCEghn~----------~lQnylR~Q~~~~~s~nlV~~~~~ll~~l~~~~~~~~--~~~~~~~ 70 (109)
T PF08454_consen 3 NSQDMEIIQRILRFLQLLCEGHNL----------DLQNYLRQQPNNKNSYNLVSETVDLLDSLQEFGKDIN--SDNIELI 70 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHCcCCH----------HHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHhh--HHHHHHH
Confidence 357888899999999999987664 45555531 1 1222 22222 221 2356778
Q ss_pred HHHHHHHHHHHhc-ChhhHHHhhcccc
Q 006200 84 CAALRCISDIIAA-HPKNRDVLASKVL 109 (657)
Q Consensus 84 ~~AL~t~adlIrg-n~~nQ~~fa~~~v 109 (657)
..++.|+.++|-| +..||..+++..+
T Consensus 71 ~q~~~tL~E~iQGPC~eNQ~~l~~s~~ 97 (109)
T PF08454_consen 71 IQCFDTLTEFIQGPCIENQIALANSKF 97 (109)
T ss_pred HHHHHHHHHHHcCCCHHhHHHHHHccH
Confidence 8999999999999 9999999986655
No 403
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=42.68 E-value=2.4e+02 Score=29.68 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHH
Q 006200 535 ESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEV 573 (657)
Q Consensus 535 eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~ 573 (657)
.+.-+++|+-..+||.++.++...+..|.+++..|.+.+
T Consensus 85 tsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN 123 (248)
T PF08172_consen 85 TSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADN 123 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555544444444444444443
No 404
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=42.51 E-value=1.4e+02 Score=30.27 Aligned_cols=32 Identities=19% Similarity=0.367 Sum_probs=21.3
Q ss_pred HHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 546 AKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 546 ~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
.....||.....+++.||.-+...+.|+..|+
T Consensus 163 ~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 163 KSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445666666777777777777777777765
No 405
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=42.45 E-value=6.9e+02 Score=30.18 Aligned_cols=13 Identities=38% Similarity=0.547 Sum_probs=6.5
Q ss_pred hhHHHHHHHHHHc
Q 006200 619 SKVEKLSARLLEL 631 (657)
Q Consensus 619 ~K~~~~k~~L~~l 631 (657)
..+++++..+-+|
T Consensus 300 ~~r~kL~N~i~eL 312 (670)
T KOG0239|consen 300 EERRKLHNEILEL 312 (670)
T ss_pred HHHHHHHHHHHHh
Confidence 5555555554443
No 406
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=42.30 E-value=5.7e+02 Score=29.13 Aligned_cols=101 Identities=26% Similarity=0.411 Sum_probs=70.0
Q ss_pred CcHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHH
Q 006200 453 SDKDYVKRLKAFVEKQCSEI----QKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILK 528 (657)
Q Consensus 453 ~s~~~v~~lk~~i~~Q~~ei----q~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~ 528 (657)
..|.||.+=|..+...+..+ .+|+.-+..|..++.+-|. | ....|++...+++..+++.+..++
T Consensus 203 s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgV--------R----p~~~qLe~v~kdi~~a~keL~~m~ 270 (426)
T smart00806 203 SNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGV--------R----PSKKQLETVQKELETARKELKKME 270 (426)
T ss_pred cchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------C----CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999988887765 3555566666666665552 1 337788888888888888877665
Q ss_pred H----HH----HHHHHHHHHH----------HHHHHHHHHhHHHhHHHHhHHHHH
Q 006200 529 E----EK----AQIESDSSMY----------RNLAAKMESDLKSLSDAYNSLEQT 565 (657)
Q Consensus 529 ~----e~----~~~eae~~~~----------~~~a~~le~~l~~ls~~~~~Le~~ 565 (657)
. ++ .-||+|+... ...+..|+.||++++.-+.-.|+-
T Consensus 271 ~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQedL~~DL~dDL~ka~eTf~lVeq~ 325 (426)
T smart00806 271 EYIDIEKPIWKKIWEAELDKVCEEQQFLTLQEDLIADLKEDLEKAEETFDLVEQC 325 (426)
T ss_pred HHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 22 6777777653 345666667777777766666553
No 407
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=42.24 E-value=3.5e+02 Score=26.65 Aligned_cols=66 Identities=14% Similarity=0.186 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 512 TLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 512 ~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
.++-+|.-.+.+-..|+..+..++..+..++.++.+.+.-+.+.+.+++=|...+......+..++
T Consensus 88 ~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~~ 153 (159)
T PF05384_consen 88 ELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDAQ 153 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344445444455556666666677777777777777777666666666666666555555544443
No 408
>KOG0981 consensus DNA topoisomerase I [Replication, recombination and repair]
Probab=42.21 E-value=2.6e+02 Score=32.90 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=23.1
Q ss_pred hhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 499 QRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIE 535 (657)
Q Consensus 499 ~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~e 535 (657)
||+......++++.|...+++.+.++.+++.++.+.+
T Consensus 627 QR~v~K~h~~smekl~~kI~~~keql~e~~~~l~~ak 663 (759)
T KOG0981|consen 627 QRAVSKTHEKSMEKLAEKIKAKKEQLKEAEAELKSAK 663 (759)
T ss_pred cccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4544445577888887777777666665555554443
No 409
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=42.21 E-value=7.2e+02 Score=30.28 Aligned_cols=207 Identities=16% Similarity=0.215 Sum_probs=106.0
Q ss_pred hhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcCh-hhHHHhhccccCCCCccchHHHHHHHHHhccCch
Q 006200 54 TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHP-KNRDVLASKVLGEEPQVEAALNSILRIILRTSSM 132 (657)
Q Consensus 54 ~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~-~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~ 132 (657)
.|+..|.+.|.|..|+..|+.. -.++.-+-++.++ .|. .+|..|.. .+.-|+..+.+..+.
T Consensus 444 rnaqlm~~g~gL~~L~~ra~~~---~D~lLlKlIRNiS----~h~~~~k~~f~~-----------~i~~L~~~v~~~~~e 505 (708)
T PF05804_consen 444 RNAQLMCEGNGLQSLMKRALKT---RDPLLLKLIRNIS----QHDGPLKELFVD-----------FIGDLAKIVSSGDSE 505 (708)
T ss_pred HHHHHHHhcCcHHHHHHHHHhc---ccHHHHHHHHHHH----hcCchHHHHHHH-----------HHHHHHHHhhcCCcH
Confidence 5778888888899999999942 2334334444443 233 66666533 233344444344433
Q ss_pred hHHhHHHHHHHHhhcCChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhc
Q 006200 133 QEFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILM 212 (657)
Q Consensus 133 ~~r~AA~~cf~ayl~~N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~ 212 (657)
...+-+..++-..-..|.+-...+.. .++...|..-| .+.. .+ -..+.-+|++.-.+-
T Consensus 506 e~~vE~LGiLaNL~~~~ld~~~ll~~-------------------~~llp~L~~~L-~~g~-~~-dDl~LE~Vi~~gtla 563 (708)
T PF05804_consen 506 EFVVECLGILANLTIPDLDWAQLLQE-------------------YNLLPWLKDLL-KPGA-SE-DDLLLEVVILLGTLA 563 (708)
T ss_pred HHHHHHHHHHHhcccCCcCHHHHHHh-------------------CCHHHHHHHHh-CCCC-CC-hHHHHHHHHHHHHHH
Confidence 33355555555443333222222211 11111111111 1010 00 124555666666666
Q ss_pred CCHHHHHHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhhcChHHHHHhhcCCC
Q 006200 213 DNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRP 292 (657)
Q Consensus 213 dn~~~Ke~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~e~p~AV~~FL~~~s 292 (657)
-++.|-..+-+- .++..+..++. .+.+|+.+- .| ++--+-.||++ +..-..++.+..
T Consensus 564 ~d~~~A~lL~~s-------------gli~~Li~LL~----~kqeDdE~V---lQ--il~~f~~ll~h-~~tr~~ll~~~~ 620 (708)
T PF05804_consen 564 SDPECAPLLAKS-------------GLIPTLIELLN----AKQEDDEIV---LQ--ILYVFYQLLFH-EETREVLLKETE 620 (708)
T ss_pred CCHHHHHHHHhC-------------ChHHHHHHHHH----hhCchHHHH---HH--HHHHHHHHHcC-hHHHHHHHhccc
Confidence 666665544321 14555555553 222332111 11 22233344555 445566667777
Q ss_pred hHHHHHHHhhCCCCchHhHHHHHHHhhhhHhhc
Q 006200 293 HLTYLLELVSNPSATVCTRGLAAVLLGECVIYN 325 (657)
Q Consensus 293 ~l~~L~~~i~~~~~~~lVqGL~A~LLG~Cv~Yn 325 (657)
.+.||++.+. +.++-|+-+|-..|.|-.+|+
T Consensus 621 ~~~ylidL~~--d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 621 IPAYLIDLMH--DKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred hHHHHHHHhc--CCCHHHHHHHHHHHHHHHHhC
Confidence 8899999885 346789999999999555544
No 410
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=41.79 E-value=3.7e+02 Score=28.56 Aligned_cols=17 Identities=24% Similarity=0.223 Sum_probs=8.9
Q ss_pred HhHHHHHHHhhhhHhhcC
Q 006200 309 CTRGLAAVLLGECVIYNK 326 (657)
Q Consensus 309 lVqGL~A~LLG~Cv~Yn~ 326 (657)
.+.-+.+++.|+ ++||+
T Consensus 46 ~~ai~~glvwgl-~I~~l 62 (301)
T PF14362_consen 46 WAAIPFGLVWGL-VIFNL 62 (301)
T ss_pred HHHHHHHHHHHH-HHHHH
Confidence 344455555554 55565
No 411
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=41.68 E-value=1.8e+02 Score=34.19 Aligned_cols=38 Identities=18% Similarity=0.243 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 513 LRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMES 550 (657)
Q Consensus 513 L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~ 550 (657)
|+.++++....+|+++.++-+.+.|+..+|..+++.|.
T Consensus 105 l~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~ 142 (907)
T KOG2264|consen 105 LNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQR 142 (907)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHH
Confidence 44444444444455444444445555555554444443
No 412
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.66 E-value=99 Score=37.03 Aligned_cols=20 Identities=0% Similarity=0.210 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006200 455 KDYVKRLKAFVEKQCSEIQK 474 (657)
Q Consensus 455 ~~~v~~lk~~i~~Q~~eiq~ 474 (657)
.+++.+++..|++-++.|+.
T Consensus 39 d~li~ki~~eir~~d~~l~~ 58 (793)
T KOG2180|consen 39 DSLIQKIQGEIRRVDKNLLA 58 (793)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34666666667776666643
No 413
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=41.64 E-value=1.1e+03 Score=32.39 Aligned_cols=250 Identities=17% Similarity=0.160 Sum_probs=0.0
Q ss_pred CCcchhhHhhhhcCCCCCCchhHHHHHHHHHHHhhHhccCCCCCCCCCccchhhhHHHHHhhcHHHHHHHHHhccCCCch
Q 006200 1 MGFDPLISILKLRGSAYSFTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVESQWAPV 80 (657)
Q Consensus 1 ~~~~~~~~~l~~~~~~~~W~~Qk~~N~~~~L~ivrllV~~g~~~~~~~~~~~~~nQ~~l~q~glL~~ll~La~~s~~~p~ 80 (657)
.|..+|+++|+- .+..--..++.++|.+..... .|+.++.++|.+..|.+|.- ++ ..
T Consensus 446 ggIp~LV~LL~s---------~s~~iQ~~A~~~L~nLa~~nd-----------enr~aIieaGaIP~LV~LL~-s~--~~ 502 (2102)
T PLN03200 446 EGVQLLISLLGL---------SSEQQQEYAVALLAILTDEVD-----------ESKWAITAAGGIPPLVQLLE-TG--SQ 502 (2102)
T ss_pred CcHHHHHHHHcC---------CCHHHHHHHHHHHHHHHcCCH-----------HHHHHHHHCCCHHHHHHHHc-CC--CH
Q ss_pred HhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchhHHhHHHHHHHHhhcCChhhH-HHHHhh
Q 006200 81 AVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAADRIFNSFCEKNPDGQ-AMLTST 159 (657)
Q Consensus 81 ~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~~r~AA~~cf~ayl~~N~~~q-~~L~~t 159 (657)
.++.+|.-+++.+-.++..++..+..-.+ +..|-.+|...+...+--|...+.++.++.+.-+ ..|..-
T Consensus 503 ~iqeeAawAL~NLa~~~~qir~iV~~aGA----------IppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~L 572 (2102)
T PLN03200 503 KAKEDSATVLWNLCCHSEDIRACVESAGA----------VPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTAL 572 (2102)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHCCC----------HHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHH
Q ss_pred hcCCCCCCCCCCCcccccCChhHHH----------------------hhhcccCCCCcchhHHHHHHHHHHHHhcCCHHH
Q 006200 160 LIPQPQSMSHAPLEEDVNMSFGSML----------------------IRGLTLGESDGDLEVCCRAASVLSHILMDNLQC 217 (657)
Q Consensus 160 l~p~~~~~~~~~~~~~~~~s~g~~L----------------------l~~L~s~d~~~dpy~~wfAa~iL~hll~dn~~~ 217 (657)
+.......- ......| +..|...=...++...=.|+.+|..++..++..
T Consensus 573 Llsdd~~~~---------~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~ 643 (2102)
T PLN03200 573 LLGDLPESK---------VHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDL 643 (2102)
T ss_pred hcCCChhHH---------HHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHH
Q ss_pred HHHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhhcChHHHHHhhcCCChHHHH
Q 006200 218 KERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYL 297 (657)
Q Consensus 218 Ke~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~e~p~AV~~FL~~~s~l~~L 297 (657)
...+-... .+..+..+|. ..+.+.+....| -|.=|.. ...+.-...+...+ -++.|
T Consensus 644 ~~avv~ag-------------aIpPLV~LLs----s~~~~v~keAA~----AL~nL~~--~~~~~q~~~~v~~G-aV~pL 699 (2102)
T PLN03200 644 CESLATDE-------------IINPCIKLLT----NNTEAVATQSAR----ALAALSR--SIKENRKVSYAAED-AIKPL 699 (2102)
T ss_pred HHHHHHcC-------------CHHHHHHHHh----cCChHHHHHHHH----HHHHHHh--CCCHHHHHHHHHcC-CHHHH
Q ss_pred HHHhhCCCCchHhHHHHHH
Q 006200 298 LELVSNPSATVCTRGLAAV 316 (657)
Q Consensus 298 ~~~i~~~~~~~lVqGL~A~ 316 (657)
++.+...+.++.-.++.|+
T Consensus 700 ~~LL~~~d~~v~e~Al~AL 718 (2102)
T PLN03200 700 IKLAKSSSIEVAEQAVCAL 718 (2102)
T ss_pred HHHHhCCChHHHHHHHHHH
No 414
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=41.61 E-value=6.1e+02 Score=30.45 Aligned_cols=50 Identities=22% Similarity=0.169 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhH
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLS 556 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls 556 (657)
..+++.|...++++.++.+.++..+..-.-++..++..++..|..=++|.
T Consensus 29 ~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lq 78 (701)
T PF09763_consen 29 EKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQ 78 (701)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchh
Confidence 45677788888888888877777777777777777777777775544444
No 415
>PF04220 YihI: Der GTPase activator (YihI); InterPro: IPR007336 This entry contains Escherichia coli (strain K12) YihI. YihI activates the GTPase activity of Der, a 50S ribosomal subunit stability factor and can therefore be considered a GAP (GTPase activating)-like protein. The stimulation is specific to Der as YihI does not stimulate the GTPase activity of Era or ObgE. The interaction of YihI with Der requires only the C-terminal 78 amino acids of YihI []. A yihI deletion mutant is viable and shows a shorter lag period, but the same post-lag growth rate as a wild-type strain. yihI is expressed during the lag period. Overexpression of yihI inhibits cell growth and biogenesis of the 50S ribosomal subunit []. YihI is an unusual, highly hydrophilic protein with an uneven distribution of charged residues, resulting in an N-terminal region with high pI and a C-terminal region with low pI [].
Probab=41.48 E-value=17 Score=35.94 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=19.5
Q ss_pred hhhhHHHHHHHHHHcCchhhhhhc
Q 006200 617 EQSKVEKLSARLLELGEDVEKLLE 640 (657)
Q Consensus 617 ~~~K~~~~k~~L~~lg~~v~~~~~ 640 (657)
.+.++.|+...|..||+...++++
T Consensus 131 vD~~LdRi~~Lm~~LGi~~ddd~e 154 (169)
T PF04220_consen 131 VDEKLDRIEELMEELGIEDDDDDE 154 (169)
T ss_pred HHHHHHHHHHHHHHhCCCcccccc
Confidence 478899999999999998665553
No 416
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=41.39 E-value=5e+02 Score=28.21 Aligned_cols=40 Identities=15% Similarity=0.138 Sum_probs=22.3
Q ss_pred HHHHHHhHhHHHHHhhhhhhhHHHHHHHHHHcCchhhhhhccCCCCCC
Q 006200 600 QKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVEKLLEGIGDDMG 647 (657)
Q Consensus 600 ~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~lg~~v~~~~~~~~~~~~ 647 (657)
...++.++++|-. .+..-...+.+.|+-+-.+ ...+|..+
T Consensus 149 ~d~L~~e~~~Lre-------~L~~rdeli~khGlVlv~~-~~ngd~~~ 188 (302)
T PF09738_consen 149 HDSLREELDELRE-------QLKQRDELIEKHGLVLVPD-ATNGDTSD 188 (302)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHCCeeeCCC-CCCCcccc
Confidence 3444555544433 3334444568899998887 55444443
No 417
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=41.30 E-value=2.2e+02 Score=31.14 Aligned_cols=13 Identities=23% Similarity=0.186 Sum_probs=6.8
Q ss_pred HHHHHHhcccccc
Q 006200 352 LKFDEMQKSFLFS 364 (657)
Q Consensus 352 ~kl~~lr~~~~f~ 364 (657)
.+|..+-.+|.|.
T Consensus 173 ~~l~~~~~~p~F~ 185 (344)
T PF12777_consen 173 KKLKKYLKNPDFN 185 (344)
T ss_dssp HHHHCTTTSTTSS
T ss_pred HHHHHHhcCCCCC
Confidence 4444455566554
No 418
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=41.23 E-value=2.6e+02 Score=24.99 Aligned_cols=15 Identities=13% Similarity=0.233 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 006200 510 VETLRKDLHEASQRL 524 (657)
Q Consensus 510 ~e~L~~~L~~~~~~~ 524 (657)
+..|+.+++.....+
T Consensus 8 ~q~l~~~~~~l~~~~ 22 (105)
T cd00632 8 LQQLQQQLQAYIVQR 22 (105)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444433333
No 419
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=41.19 E-value=1.4e+02 Score=31.75 Aligned_cols=37 Identities=14% Similarity=0.202 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 006200 455 KDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGG 491 (657)
Q Consensus 455 ~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~ 491 (657)
++-+.+|+..-+....+|+.|+++++.-+.+|.+..+
T Consensus 179 ~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~ 215 (259)
T PF08657_consen 179 REKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNR 215 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5567789999999999999999999999999977764
No 420
>PRK14161 heat shock protein GrpE; Provisional
Probab=41.09 E-value=95 Score=31.03 Aligned_cols=43 Identities=19% Similarity=0.232 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006200 509 QVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESD 551 (657)
Q Consensus 509 q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~ 551 (657)
.++.++.++++++++++.+++...++.|+.++||..+.+-..+
T Consensus 20 ~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~ 62 (178)
T PRK14161 20 IVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDE 62 (178)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666677777777888888899999888776655533
No 421
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=41.08 E-value=5.3e+02 Score=31.65 Aligned_cols=20 Identities=5% Similarity=0.061 Sum_probs=10.5
Q ss_pred HHHHHHHHhcChhhHHHhhc
Q 006200 87 LRCISDIIAAHPKNRDVLAS 106 (657)
Q Consensus 87 L~t~adlIrgn~~nQ~~fa~ 106 (657)
|..++..++.......+|..
T Consensus 87 l~~i~~~l~~~~~l~~~l~~ 106 (771)
T TIGR01069 87 ILVIQNALKTVKHLKVLSEH 106 (771)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 45555555555555555543
No 422
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=41.05 E-value=1.8e+02 Score=28.25 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006200 508 VQVETLRKDLHEASQRLEILKE 529 (657)
Q Consensus 508 ~q~e~L~~~L~~~~~~~e~l~~ 529 (657)
.++..++.||..+.++++.|+.
T Consensus 27 ~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 27 EERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555555443
No 423
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=40.83 E-value=72 Score=28.32 Aligned_cols=35 Identities=26% Similarity=0.230 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 509 QVETLRKDLHEASQRLEILKEEKAQIESDSSMYRN 543 (657)
Q Consensus 509 q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~ 543 (657)
++..++++.+.+++++++++.|++..++++++++-
T Consensus 24 k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~v 58 (87)
T PF10883_consen 24 KVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKV 58 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666777777778888888887777543
No 424
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=40.77 E-value=4.1e+02 Score=27.92 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 459 KRLKAFVEKQCSEIQKLLGRNATLAE 484 (657)
Q Consensus 459 ~~lk~~i~~Q~~eiq~L~~~~~~L~~ 484 (657)
+.++..+++.-.+.+.|..+.-.+.+
T Consensus 160 d~l~~eLqkr~~~v~~l~~q~~k~~~ 185 (289)
T COG4985 160 DPLERELQKRLLEVETLRDQVDKMVE 185 (289)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555544444
No 425
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=40.65 E-value=4.3e+02 Score=27.32 Aligned_cols=12 Identities=17% Similarity=-0.080 Sum_probs=4.7
Q ss_pred HHHhHhHHHHHh
Q 006200 603 SEAELNDLLVCL 614 (657)
Q Consensus 603 ~~~e~~dLl~ll 614 (657)
+-+-++|...-+
T Consensus 151 i~krl~e~~~~l 162 (247)
T PF06705_consen 151 ILKRLEEEENRL 162 (247)
T ss_pred HHHHHHHHHHHH
Confidence 333444443333
No 426
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=40.58 E-value=6.5e+02 Score=29.35 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006200 466 EKQCSEIQKLLGRNATLA 483 (657)
Q Consensus 466 ~~Q~~eiq~L~~~~~~L~ 483 (657)
+.-+..+..++.+|..|.
T Consensus 162 EaL~ekLk~~~een~~lr 179 (596)
T KOG4360|consen 162 EALQEKLKPLEEENTQLR 179 (596)
T ss_pred HHHHhhcCChHHHHHHHH
Confidence 333333333344444333
No 427
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=40.49 E-value=5.2e+02 Score=31.80 Aligned_cols=121 Identities=21% Similarity=0.181 Sum_probs=62.5
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcCCCCCCcc
Q 006200 509 QVETLRKDLHE--ASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSP 586 (657)
Q Consensus 509 q~e~L~~~L~~--~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~~~~~~~~ 586 (657)
+.+.+..|+-+ ..+.+.+++.|...++.|+-..+- -.+- .+...||..+..+..++..+-+++..+. .
T Consensus 814 emeki~~qvf~mDi~kql~eykvey~vLq~El~~~~~--~~~~-------~~~~~lE~~~s~~~~q~~~ll~qlq~~~-~ 883 (948)
T KOG4436|consen 814 EMEKIIKQVFEMDISKQLAEYKVEYHVLQEELTTSSH--LEDL-------NRIAKLETTNSSLQAQNTDLLEQLQVAE-L 883 (948)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccc--hhhc-------ccccccccchhhhHhhhhhhhhhhcccc-c
Confidence 33444444433 334455556666666666554322 1111 1244455555555555544444332221 1
Q ss_pred cHHHHHHHHHHHHHHHHHHhHhHHHHHhhhhhhhHHHHHHHHHH-cCchhhhhhcc
Q 006200 587 DVEAIKAEAREEAQKESEAELNDLLVCLGQEQSKVEKLSARLLE-LGEDVEKLLEG 641 (657)
Q Consensus 587 ~l~~~~~~~~~e~~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~-lg~~v~~~~~~ 641 (657)
+++... .--+...+.+.++-+.|.-|.+.+....++-..+++ .|.+-..+.+-
T Consensus 884 ~iq~l~--~~v~~l~~~e~~~k~~l~~le~~~~~~~k~ve~~rk~s~~psd~~~e~ 937 (948)
T KOG4436|consen 884 TIQTLE--RYVEQLLEHENKLKRALQTLEDEDRARRKTVETLRKISGFPSDVLAEC 937 (948)
T ss_pred hhhHHH--HHhhhhhcchHHHHHHHhcccchhHHHHhhHHHHHhhccCCcccchhh
Confidence 222211 112223344677888999999999999998888855 56655554443
No 428
>PRK14160 heat shock protein GrpE; Provisional
Probab=40.22 E-value=1.1e+02 Score=31.47 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006200 506 DRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESD 551 (657)
Q Consensus 506 ~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~ 551 (657)
.+.+++.|+.+++.+.+.++.+++...++.|+.++||+.+.+-..+
T Consensus 59 l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~ 104 (211)
T PRK14160 59 LKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEG 104 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777777888888888888888776665543
No 429
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=40.18 E-value=73 Score=26.50 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 509 QVETLRKDLHEASQRLEILKEEKAQIESDSSMY 541 (657)
Q Consensus 509 q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~ 541 (657)
...++++++.+++++++.++.++..++.+++.+
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555555555555555555555555543
No 430
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=40.12 E-value=3.2e+02 Score=25.61 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 460 RLKAFVEKQCSEIQKLLGRNATLA 483 (657)
Q Consensus 460 ~lk~~i~~Q~~eiq~L~~~~~~L~ 483 (657)
.|..+++.-..+++.|.+++..+.
T Consensus 10 ~l~~~~~~l~~~~~~l~~~~~~l~ 33 (140)
T PRK03947 10 ELAAQLQALQAQIEALQQQLEELQ 33 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333433333333333
No 431
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=39.95 E-value=1.2e+02 Score=31.56 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=52.8
Q ss_pred HHHHHHHHHhHHHHHHhhhhhcCCCCCccccch--hhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006200 411 KHFVDIIKSLESSIRENIVDVYSRPKSEVAVVP--AELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAK 488 (657)
Q Consensus 411 ~~Fv~f~K~n~~~I~~ai~~~~~dP~~e~~~~~--~~~~~~~~~~s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~ 488 (657)
..=-.-+|+-|.+++..| |........ ..+-.+ ..++|..++....+|.+.|++|+.++..|+.+|++
T Consensus 68 k~RRahlk~~~~~Lk~~v------P~~~~~~~~t~lsiL~k----A~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~q 137 (232)
T KOG2483|consen 68 KRRRAHLKDCFESLKDSV------PLLNGETRSTTLSILDK----ALEHIQSLERKSATQQQDIEDLSRENRKLKARLEQ 137 (232)
T ss_pred HHHHHHHHHHHHHHHHhC------CCCCCcchhhhhHhhhh----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777766 766543211 222222 47799999999999999999999999999999988
Q ss_pred hcC
Q 006200 489 IGG 491 (657)
Q Consensus 489 ~~~ 491 (657)
.++
T Consensus 138 l~~ 140 (232)
T KOG2483|consen 138 LSL 140 (232)
T ss_pred hcC
Confidence 764
No 432
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=39.90 E-value=1.2e+02 Score=26.52 Aligned_cols=42 Identities=24% Similarity=0.401 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKM 548 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~l 548 (657)
..++-.|+..|..+..+.+.++.|..++++|-.-++.-+..|
T Consensus 22 i~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 22 IQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777778777888888888777777766665
No 433
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=39.73 E-value=1.6e+02 Score=30.71 Aligned_cols=24 Identities=4% Similarity=-0.031 Sum_probs=10.7
Q ss_pred HhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 554 SLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 554 ~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
.+..+|..++.+...++.+++.++
T Consensus 106 ~~~~~~~~~~~~l~~~~~~l~~~~ 129 (322)
T TIGR01730 106 DAKAAVEAAQADLEAAKASLASAQ 129 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444
No 434
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=39.59 E-value=5.3e+02 Score=28.02 Aligned_cols=33 Identities=9% Similarity=0.240 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 511 ETLRKDLHEASQRLEILKEEKAQIESDSSMYRN 543 (657)
Q Consensus 511 e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~ 543 (657)
..++..|.+.++.++.++.+...++.+++.|..
T Consensus 77 ~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~ 109 (301)
T PF06120_consen 77 AKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQ 109 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443
No 435
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=39.27 E-value=6.7e+02 Score=29.06 Aligned_cols=21 Identities=29% Similarity=0.259 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006200 456 DYVKRLKAFVEKQCSEIQKLL 476 (657)
Q Consensus 456 ~~v~~lk~~i~~Q~~eiq~L~ 476 (657)
..++.+|...+.+..++.+.+
T Consensus 221 ~~l~l~~~~~~~~~~el~~Yk 241 (511)
T PF09787_consen 221 EQLELLKAEGESEEAELQQYK 241 (511)
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 355666666666666666666
No 436
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=39.16 E-value=1.2e+02 Score=28.08 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=16.5
Q ss_pred HHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 547 KMESDLKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 547 ~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
.+-..+..|+..+.+|..+|.+|.-|+..||+
T Consensus 19 ~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~ 50 (110)
T PRK13169 19 VLLKELGALKKQLAELLEENTALRLENDKLRE 50 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444555566666666666654
No 437
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.13 E-value=1.7e+02 Score=32.11 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006200 507 RVQVETLRKDLHEASQRLEILKE 529 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~ 529 (657)
+...++|++++...++.++.|++
T Consensus 252 ~~~~etLEqq~~~L~~niDIL~~ 274 (365)
T KOG2391|consen 252 VAMKETLEQQLQSLQKNIDILKS 274 (365)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHH
Confidence 45556666666666665555543
No 438
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=38.89 E-value=2e+02 Score=28.39 Aligned_cols=11 Identities=9% Similarity=0.347 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 006200 530 EKAQIESDSSM 540 (657)
Q Consensus 530 e~~~~eae~~~ 540 (657)
|+.+++.+.+.
T Consensus 105 e~~~l~~e~~~ 115 (161)
T TIGR02894 105 ENERLKNQNES 115 (161)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 439
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=38.84 E-value=97 Score=35.10 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006200 509 QVETLRKDLHEASQRLEILKEE 530 (657)
Q Consensus 509 q~e~L~~~L~~~~~~~e~l~~e 530 (657)
+++.|++++++.+.+++.++..
T Consensus 335 ~~~~l~~~~~~~~~~l~~l~~~ 356 (451)
T PF03961_consen 335 KLEELEEELEELKEELEKLKKN 356 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333
No 440
>PRK14140 heat shock protein GrpE; Provisional
Probab=38.83 E-value=1.5e+02 Score=30.10 Aligned_cols=46 Identities=15% Similarity=0.258 Sum_probs=36.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006200 506 DRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESD 551 (657)
Q Consensus 506 ~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~ 551 (657)
....+++++.+++++++++..+++...++.|+.++|++...+-..+
T Consensus 35 ~~~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~ 80 (191)
T PRK14140 35 EAELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEA 80 (191)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777888888888888888999999999999988877665543
No 441
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=38.80 E-value=6.5e+02 Score=30.89 Aligned_cols=22 Identities=9% Similarity=0.105 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhcChhhHHHhhc
Q 006200 85 AALRCISDIIAAHPKNRDVLAS 106 (657)
Q Consensus 85 ~AL~t~adlIrgn~~nQ~~fa~ 106 (657)
.-|..++.+++.-.....+|..
T Consensus 87 ~eL~~i~~~l~~~~~l~~~l~~ 108 (782)
T PRK00409 87 DELLEIAKTLRYFRQLKRFIED 108 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666666666654
No 442
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=38.78 E-value=3.3e+02 Score=25.33 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=12.5
Q ss_pred HhHHHHHhHhHHHHHHHHHcCC
Q 006200 559 YNSLEQTNFHLEKEVKALKSGG 580 (657)
Q Consensus 559 ~~~Le~~~~~le~e~~~lr~~~ 580 (657)
+...+.++.+++.|+++++..|
T Consensus 72 i~~~~~kV~ere~eL~eA~~~G 93 (115)
T PF06476_consen 72 IAEKQQKVAEREAELKEAQAKG 93 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3444455666666666666543
No 443
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.75 E-value=1.6e+02 Score=25.26 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=14.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 505 LDRVQVETLRKDLHEASQRLEILKEEK 531 (657)
Q Consensus 505 ~~~~q~e~L~~~L~~~~~~~e~l~~e~ 531 (657)
.++.-++.|...|.+.+..++.+.++.
T Consensus 19 fQE~tieeLn~~laEq~~~i~k~q~ql 45 (72)
T COG2900 19 FQEQTIEELNDALAEQQLVIDKLQAQL 45 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666655555554444333
No 444
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=38.72 E-value=3.1e+02 Score=25.01 Aligned_cols=47 Identities=17% Similarity=0.279 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 531 KAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 531 ~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
..+....++.-.......+.++..|...+..|..++..++..+...+
T Consensus 62 ~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 62 RERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444555555555555555555555555554443
No 445
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=38.60 E-value=2e+02 Score=32.48 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=19.0
Q ss_pred HHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 547 KMESDLKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 547 ~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
++..+.+.+...+..||.+...+++++..+-.
T Consensus 70 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T PRK05431 70 ALIAEVKELKEEIKALEAELDELEAELEELLL 101 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666666655543
No 446
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=38.36 E-value=5.1e+02 Score=27.47 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006200 464 FVEKQCSEIQKLLGRNATLAE 484 (657)
Q Consensus 464 ~i~~Q~~eiq~L~~~~~~L~~ 484 (657)
.+.....+++.++.++..+..
T Consensus 81 ~l~~a~a~l~~~~~~~~~~~~ 101 (334)
T TIGR00998 81 ALAKAEANLAALVRQTKQLEI 101 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 447
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=38.35 E-value=1.2e+02 Score=23.45 Aligned_cols=28 Identities=14% Similarity=0.370 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 511 ETLRKDLHEASQRLEILKEEKAQIESDS 538 (657)
Q Consensus 511 e~L~~~L~~~~~~~e~l~~e~~~~eae~ 538 (657)
+.|++.-+.++...+.|..|+..+.+++
T Consensus 8 ~~LK~~yd~Lk~~~~~L~~E~~~L~aev 35 (45)
T PF02183_consen 8 DALKASYDSLKAEYDSLKKENEKLRAEV 35 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3343333333333333333333333333
No 448
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=38.27 E-value=1.3e+02 Score=26.71 Aligned_cols=19 Identities=26% Similarity=0.571 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006200 509 QVETLRKDLHEASQRLEIL 527 (657)
Q Consensus 509 q~e~L~~~L~~~~~~~e~l 527 (657)
|++.+...+.+...+++.+
T Consensus 6 eId~lEekl~~cr~~le~v 24 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAV 24 (85)
T ss_pred HHhhHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 449
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=38.25 E-value=1.9e+02 Score=30.55 Aligned_cols=60 Identities=17% Similarity=0.132 Sum_probs=36.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHH
Q 006200 505 LDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQ 564 (657)
Q Consensus 505 ~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~ 564 (657)
+.+..+..|.+.++.-.+..-+|..++..++.|+.+++-.++++.-++.++..+-..+-.
T Consensus 37 ~~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~ 96 (263)
T PRK10803 37 SVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYL 96 (263)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 335555666666665555555556666667777777777777777666666654444333
No 450
>PLN02939 transferase, transferring glycosyl groups
Probab=38.25 E-value=6.8e+02 Score=31.59 Aligned_cols=12 Identities=33% Similarity=0.457 Sum_probs=5.0
Q ss_pred hHhHHHHHHHHH
Q 006200 566 NFHLEKEVKALK 577 (657)
Q Consensus 566 ~~~le~e~~~lr 577 (657)
++.|...+..|+
T Consensus 326 ~~~~~~~~~~~~ 337 (977)
T PLN02939 326 NQDLRDKVDKLE 337 (977)
T ss_pred chHHHHHHHHHH
Confidence 333444444443
No 451
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=38.15 E-value=5e+02 Score=27.29 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 457 YVKRLKAFVEKQCSEIQKLLGRNATLAEELA 487 (657)
Q Consensus 457 ~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~ 487 (657)
|+.++|..+++++ .++..+..+.+.+.
T Consensus 147 y~~slK~vlk~R~----~~Q~~le~k~e~l~ 173 (243)
T cd07666 147 YSETLMGVIKRRD----QIQAELDSKVEALA 173 (243)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 6777888888776 33444444455443
No 452
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=38.09 E-value=4.3e+02 Score=31.13 Aligned_cols=103 Identities=18% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHH--HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 006200 470 SEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETL--RKDLHEASQRLEILKEEK----AQIESDSSMYRN 543 (657)
Q Consensus 470 ~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L--~~~L~~~~~~~e~l~~e~----~~~eae~~~~~~ 543 (657)
++++++++.+....+ .-...+.+| +.++++.++++++++..+ ..+..-.+.+.+
T Consensus 164 ~~~~~~~~~~k~~~~--------------------~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~ 223 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQ--------------------KWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDK 223 (555)
T ss_pred HHHHHHHHHHHHHHH--------------------HHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcCCCCCCcccHHHHHHHHHHHHHHHHHHhHhHHHHHhh
Q 006200 544 LAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAEAREEAQKESEAELNDLLVCLG 615 (657)
Q Consensus 544 ~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~~~~~~~~~l~~~~~~~~~e~~~~~~~e~~dLl~ll~ 615 (657)
...+++.+..+.....+.|+....++.+++++++ +.-+.+.+.|....+
T Consensus 224 lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk-----------------------~ap~~D~~~L~~~~~ 272 (555)
T TIGR03545 224 LKKEGKADKQKIKSAKNDLQNDKKQLKADLAELK-----------------------KAPQNDLKRLENKYA 272 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----------------------hccHhHHHHHHHHhC
No 453
>PRK14162 heat shock protein GrpE; Provisional
Probab=37.92 E-value=1.2e+02 Score=30.80 Aligned_cols=45 Identities=18% Similarity=0.230 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESD 551 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~ 551 (657)
..+++.|+.+++.++++++.+++...++.|+.++|+....+-..+
T Consensus 38 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~ 82 (194)
T PRK14162 38 QNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQ 82 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888889999999999988776665533
No 454
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=37.90 E-value=56 Score=36.26 Aligned_cols=12 Identities=25% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH
Q 006200 461 LKAFVEKQCSEI 472 (657)
Q Consensus 461 lk~~i~~Q~~ei 472 (657)
||+..+...+++
T Consensus 60 LrE~~et~~KE~ 71 (370)
T PF02994_consen 60 LREQDETPEKEL 71 (370)
T ss_dssp ------------
T ss_pred HHHhhhhhhhhh
Confidence 344443333333
No 455
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=37.47 E-value=6.8e+02 Score=28.64 Aligned_cols=16 Identities=19% Similarity=0.291 Sum_probs=11.2
Q ss_pred CChhHHHHHHHhhcch
Q 006200 332 RDAFSIVDSISQKVGL 347 (657)
Q Consensus 332 ~ds~~l~~lI~~RiG~ 347 (657)
-|+..+.+.|.+|=-+
T Consensus 137 ~Ds~~v~dYI~SrDml 152 (434)
T PRK15178 137 SEGFQVREFILSKEMM 152 (434)
T ss_pred chHHHHHHHHhhHHHH
Confidence 5777788888877333
No 456
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=37.40 E-value=4.4e+02 Score=29.74 Aligned_cols=59 Identities=17% Similarity=0.238 Sum_probs=32.4
Q ss_pred HHHHHHhHHHHHHhhhhhcCCCCCccccchhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006200 414 VDIIKSLESSIRENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAK 488 (657)
Q Consensus 414 v~f~K~n~~~I~~ai~~~~~dP~~e~~~~~~~~~~~~~~~s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~ 488 (657)
++|+++|-..|++++.. +.-+. . ..-+-+-.+-..-++...++++|+.+-..+..++.+
T Consensus 4 ik~ir~n~~~v~~~l~~--R~~~~--~------------~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~ 62 (418)
T TIGR00414 4 RKLLRNNPDLVKESLKA--RGLSV--D------------IDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGK 62 (418)
T ss_pred HHHHHhCHHHHHHHHHh--cCCCh--h------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888898888888852 11000 0 001122234455566666666666666666665543
No 457
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=37.23 E-value=4.4e+02 Score=27.00 Aligned_cols=100 Identities=22% Similarity=0.214 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--H---------HHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHH
Q 006200 455 KDYVKRLKAFVEKQCSEIQKLL--G---------RNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQR 523 (657)
Q Consensus 455 ~~~v~~lk~~i~~Q~~eiq~L~--~---------~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~ 523 (657)
.+.++..+.+++-|...+..|. . -|..|+..+ ...+.++..+++++++..+.
T Consensus 103 ~~al~na~a~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~-----------------~~le~~l~~~k~~ie~vN~~ 165 (221)
T PF05700_consen 103 KEALDNAYAQLEHQRLRLENLELLSKYGENAWLIHNEQLEAML-----------------KRLEKELAKLKKEIEEVNRE 165 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888887652 1 222233221 12345666666666666654
Q ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 524 LE----ILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 524 ~e----~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
.. ....++..++..-.+ +-...-.+..+...||+++.++..+..++++
T Consensus 166 RK~~Q~~~~~~L~~Le~~W~~-------~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 166 RKRRQEEAGEELRYLEQRWKE-------LVSKNLEIEVACEELEQEIEQLKRKAAELKE 217 (221)
T ss_pred HHHHHHHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33 222333444443333 3333333446667777888887777666654
No 458
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=37.16 E-value=77 Score=25.78 Aligned_cols=34 Identities=15% Similarity=0.393 Sum_probs=0.0
Q ss_pred HHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 545 AAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 545 a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
+.++|+++.+++..++.+..++..+.+++..+.+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~e 35 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEE 35 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 459
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=37.04 E-value=53 Score=37.31 Aligned_cols=66 Identities=27% Similarity=0.370 Sum_probs=50.2
Q ss_pred HHHHhhHhccCCCCCCCCCccchhhhHHHHHhhcHHHHHHHHH---------hccCCCchHhHHHHHHHHHHHHhcChhh
Q 006200 30 ALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLA---------VESQWAPVAVRCAALRCISDIIAAHPKN 100 (657)
Q Consensus 30 ~L~ivrllV~~g~~~~~~~~~~~~~nQ~~l~q~glL~~ll~La---------~~s~~~p~~Ir~~AL~t~adlIrgn~~n 100 (657)
+|+.+|+|---- .+-..+....-+..|+++| +. ....++..+||+|++.++--++..
T Consensus 1 ~L~~LRiLsRd~------------~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~--~~~~~v~~EALKCL~N~lf~s~~a 66 (446)
T PF10165_consen 1 CLETLRILSRDP------------TGLDPLFTEEGLSTLLKHAGLSESDEDEFE--SPDPDVSREALKCLCNALFLSPSA 66 (446)
T ss_pred CHHHHHHHccCc------------ccchhhccHHHHHHHHHhcCCccccccccc--CCChHHHHHHHHHHHHHHhCCHHH
Confidence 366777775321 3444555556677889998 63 357899999999999999999999
Q ss_pred HHHhhcccc
Q 006200 101 RDVLASKVL 109 (657)
Q Consensus 101 Q~~fa~~~v 109 (657)
|..|.....
T Consensus 67 R~~~~~~~~ 75 (446)
T PF10165_consen 67 RQIFVDLGL 75 (446)
T ss_pred HHHHHHcCc
Confidence 999997755
No 460
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=36.78 E-value=5.4e+02 Score=27.31 Aligned_cols=117 Identities=21% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc--CCCCCC
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS--GGSSVS 584 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~--~~~~~~ 584 (657)
..++...+.++..+..++..+.......+.+...+...+...+.++..+...+...+.++...+.+.+..+. +-+..+
T Consensus 54 ~~~~~~a~a~l~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~iS 133 (327)
T TIGR02971 54 TAELDVARTQLDEAKARLAQVRAGAKKGEIAAQRAARAAAKLFKDVAAQQATLNRLEAELETAQREVDRYRSLFRDGAVS 133 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q ss_pred cccHHHHHHH--HHHHHHHHHHHhHhHHHHHhhhhhhhHHHHHH
Q 006200 585 SPDVEAIKAE--AREEAQKESEAELNDLLVCLGQEQSKVEKLSA 626 (657)
Q Consensus 585 ~~~l~~~~~~--~~~e~~~~~~~e~~dLl~ll~d~~~K~~~~k~ 626 (657)
..+++.++.+ .........+.++. .-+.....++...+.
T Consensus 134 ~~~~d~~~~~~~~a~~~l~~~~~~~~---~~~~~~~~~~~~~~~ 174 (327)
T TIGR02971 134 ASDLDSKALKLRTAEEELEEALASRS---EQIDGARAALASLAE 174 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhh
No 461
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=36.70 E-value=1.6e+02 Score=24.63 Aligned_cols=13 Identities=15% Similarity=0.204 Sum_probs=3.4
Q ss_pred HHhHhHHHHHHHH
Q 006200 564 QTNFHLEKEVKAL 576 (657)
Q Consensus 564 ~~~~~le~e~~~l 576 (657)
+++..+.+.++++
T Consensus 39 ~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 39 RQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHT----
T ss_pred HHHHHHHHHHHHh
Confidence 3333333333333
No 462
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=36.39 E-value=2.8e+02 Score=26.76 Aligned_cols=42 Identities=10% Similarity=0.014 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhH
Q 006200 526 ILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNF 567 (657)
Q Consensus 526 ~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~ 567 (657)
.....+..+++|+.......++....+++|......++.++.
T Consensus 38 ~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~ 79 (160)
T PF13094_consen 38 ANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALERERE 79 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555555444444444444444444444433333
No 463
>PRK00846 hypothetical protein; Provisional
Probab=36.26 E-value=2.9e+02 Score=24.00 Aligned_cols=51 Identities=12% Similarity=0.111 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 528 KEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 528 ~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
++.+..+|..++=...++..|...+......+..|..++..+.+.+++++.
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~ 62 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 62 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333344444444444445555544444444455555555556666666553
No 464
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=36.21 E-value=17 Score=44.24 Aligned_cols=13 Identities=31% Similarity=0.245 Sum_probs=8.2
Q ss_pred HHHHHHhhhhHhhcC
Q 006200 312 GLAAVLLGECVIYNK 326 (657)
Q Consensus 312 GL~A~LLG~Cv~Yn~ 326 (657)
++++-||- .+|-.
T Consensus 813 k~A~~Ll~--~~~g~ 825 (1516)
T KOG1832|consen 813 KLASALLK--EAQGT 825 (1516)
T ss_pred HHHHHHHH--HHhCC
Confidence 57777776 55554
No 465
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=36.12 E-value=7e+02 Score=28.39 Aligned_cols=130 Identities=15% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 006200 458 VKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEK------ 531 (657)
Q Consensus 458 v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~------ 531 (657)
+..|...---+...+.+|+-+.-.|..-++|++ +.=+..|++.++.+.+...-|...+
T Consensus 167 i~Klen~t~~kq~~leQLRre~V~lentlEQEq----------------EalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~ 230 (552)
T KOG2129|consen 167 IRKLENKTLLKQNTLEQLRREAVQLENTLEQEQ----------------EALVNSLWKRMDKLEQEKRYLQKKLDQPVST 230 (552)
T ss_pred HHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Q ss_pred -------------------------HHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcCCCCCCcc
Q 006200 532 -------------------------AQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSP 586 (657)
Q Consensus 532 -------------------------~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~~~~~~~~ 586 (657)
..+++|+++|+.--...| ++.+.+..++-++-...++|+..+++.+-
T Consensus 231 p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aq---k~~~ek~~qy~~Ee~~~reen~rlQrkL~----- 302 (552)
T KOG2129|consen 231 PSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQ---KSYQEKLMQYRAEEVDHREENERLQRKLI----- 302 (552)
T ss_pred CCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHH-----
Q ss_pred cHHHHHHHHHHHHHHHHHHhHhHHHHHhhh
Q 006200 587 DVEAIKAEAREEAQKESEAELNDLLVCLGQ 616 (657)
Q Consensus 587 ~l~~~~~~~~~e~~~~~~~e~~dLl~ll~d 616 (657)
..-+|.|+.-..-+|-+-+|....+
T Consensus 303 -----~e~erRealcr~lsEsesslemdee 327 (552)
T KOG2129|consen 303 -----NELERREALCRMLSESESSLEMDEE 327 (552)
T ss_pred -----HHHHHHHHHHHHhhhhhHHHHHHHH
No 466
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=36.10 E-value=71 Score=29.34 Aligned_cols=35 Identities=31% Similarity=0.524 Sum_probs=22.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006200 453 SDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIG 490 (657)
Q Consensus 453 ~s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~ 490 (657)
-+++=|+ ++|..-..++..|..++..|..++...+
T Consensus 18 Yd~~eVD---~fl~~l~~~~~~l~~e~~~L~~~~~~l~ 52 (131)
T PF05103_consen 18 YDPDEVD---DFLDELAEELERLQRENAELKEEIEELQ 52 (131)
T ss_dssp EEHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred cCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555565 4555555666777777777777775555
No 467
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=35.72 E-value=7.3e+02 Score=31.00 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 455 KDYVKRLKAFVEKQCSEIQKLLGR 478 (657)
Q Consensus 455 ~~~v~~lk~~i~~Q~~eiq~L~~~ 478 (657)
.++-.+++++..+|.+++-++..+
T Consensus 1025 ~d~~~r~~el~~rq~~el~~~~~~ 1048 (1189)
T KOG1265|consen 1025 SDNAGRVRELVNRQTQELLEMRRE 1048 (1189)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHH
Confidence 346677888888888877555544
No 468
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=35.60 E-value=31 Score=31.79 Aligned_cols=6 Identities=17% Similarity=0.224 Sum_probs=2.5
Q ss_pred HHHHHH
Q 006200 507 RVQVET 512 (657)
Q Consensus 507 ~~q~e~ 512 (657)
..+|+.
T Consensus 20 ~~eVD~ 25 (131)
T PF05103_consen 20 PDEVDD 25 (131)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344443
No 469
>PF03978 Borrelia_REV: Borrelia burgdorferi REV protein; InterPro: IPR007126 This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli [].
Probab=35.43 E-value=4.4e+02 Score=25.91 Aligned_cols=78 Identities=23% Similarity=0.339 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcCCCCCCcccHHHHHHHHHHHHHHHHHHhHhHHHHHhhh
Q 006200 537 DSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAEAREEAQKESEAELNDLLVCLGQ 616 (657)
Q Consensus 537 e~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~~~~~~~~~l~~~~~~~~~e~~~~~~~e~~dLl~ll~d 616 (657)
...+|+.-++++..++...+-+ +||.....+++-.+. +-+++.+++++.+.+.+.+ .|
T Consensus 48 ~yknyk~ki~eLke~lK~~~NA--Eleekll~lq~lfq~----------------Kl~aKL~aLKAak~~i~~~----~d 105 (160)
T PF03978_consen 48 AYKNYKKKINELKEDLKDVSNA--ELEEKLLKLQKLFQD----------------KLEAKLAALKAAKQKIEGI----QD 105 (160)
T ss_pred HHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHhcch----hh
Confidence 5667777888888777776555 555554444443222 1224445566666666665 45
Q ss_pred hhhh--HHHHHHHHHHcCchhh
Q 006200 617 EQSK--VEKLSARLLELGEDVE 636 (657)
Q Consensus 617 ~~~K--~~~~k~~L~~lg~~v~ 636 (657)
.+.+ -.+.+..-+-+|..|.
T Consensus 106 ~d~~~~k~~Iw~eak~~Gv~vk 127 (160)
T PF03978_consen 106 KDQECAKAKIWTEAKLVGVTVK 127 (160)
T ss_pred hhHHHHHHHHHHHHHhcCeeee
Confidence 5555 3334444455777663
No 470
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=35.39 E-value=4.9e+02 Score=29.36 Aligned_cols=43 Identities=14% Similarity=0.190 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 507 RVQVETLRKDLHEASQRLE-ILKEEKAQIESDSSMYRNLAAKME 549 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e-~l~~e~~~~eae~~~~~~~a~~le 549 (657)
..++..|+++|.......+ +.....+.+..-++..++-+++||
T Consensus 275 q~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 275 QNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4555555555544433222 112222334444444444444444
No 471
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=35.33 E-value=3e+02 Score=23.97 Aligned_cols=84 Identities=24% Similarity=0.340 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------hHHHhHHHHhHHHHHhHh
Q 006200 511 ETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMES----------------------DLKSLSDAYNSLEQTNFH 568 (657)
Q Consensus 511 e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~----------------------~l~~ls~~~~~Le~~~~~ 568 (657)
.++..+...++.++..+..++..++.+.....-...+++. -...|......++.++..
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~ 80 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKK 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHcCCCCCCcccHHHHHHHHHHHHHHHHHHhHhHHHHHhhhh
Q 006200 569 LEKEVKALKSGGSSVSSPDVEAIKAEAREEAQKESEAELNDLLVCLGQE 617 (657)
Q Consensus 569 le~e~~~lr~~~~~~~~~~l~~~~~~~~~e~~~~~~~e~~dLl~ll~d~ 617 (657)
++++.+.+. +.+++-...|-.+++++
T Consensus 81 l~~~~~~l~-----------------------~~l~~~~~~l~~~~~~q 106 (106)
T PF01920_consen 81 LEKQLKYLE-----------------------KKLKELKKKLYELFGQQ 106 (106)
T ss_dssp HHHHHHHHH-----------------------HHHHHHHHHHHCCCS--
T ss_pred HHHHHHHHH-----------------------HHHHHHHHHHHHHhcCC
No 472
>PLN02678 seryl-tRNA synthetase
Probab=35.32 E-value=2.2e+02 Score=32.51 Aligned_cols=32 Identities=13% Similarity=0.094 Sum_probs=19.9
Q ss_pred HHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 547 KMESDLKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 547 ~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
++...++.+...+..||.+...+++++.++-.
T Consensus 75 ~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~ 106 (448)
T PLN02678 75 ELIAETKELKKEITEKEAEVQEAKAALDAKLK 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556666666777777777777666554
No 473
>PRK14163 heat shock protein GrpE; Provisional
Probab=35.16 E-value=1.3e+02 Score=31.07 Aligned_cols=45 Identities=11% Similarity=0.168 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESD 551 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~ 551 (657)
....+.|+.+++.+++.++.+++...++.++.++||+...+-..+
T Consensus 39 ~~~~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~ 83 (214)
T PRK14163 39 AAATAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVT 83 (214)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577888898888888889999999999999988877766543
No 474
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=34.93 E-value=7e+02 Score=28.05 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 455 KDYVKRLKAFVEKQCSEIQKLLGRNATLAEEL 486 (657)
Q Consensus 455 ~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l 486 (657)
.++.++||.-|.+-..|-.+|+-+...++..+
T Consensus 284 eelar~Lr~~I~~VarENs~LqrQKle~e~~l 315 (442)
T PF06637_consen 284 EELARSLRAGIERVARENSDLQRQKLEAEQGL 315 (442)
T ss_pred HHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHH
Confidence 57888899988888888888887776666654
No 475
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=34.66 E-value=17 Score=45.32 Aligned_cols=11 Identities=18% Similarity=0.386 Sum_probs=5.7
Q ss_pred hhhcCCCCCCc
Q 006200 10 LKLRGSAYSFT 20 (657)
Q Consensus 10 l~~~~~~~~W~ 20 (657)
|-++|-+..|.
T Consensus 909 l~ipgvdrpwh 919 (3015)
T KOG0943|consen 909 LAIPGVDRPWH 919 (3015)
T ss_pred EEecCCCCcch
Confidence 33445556663
No 476
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=34.60 E-value=9.6e+02 Score=29.54 Aligned_cols=17 Identities=12% Similarity=0.139 Sum_probs=12.8
Q ss_pred cCChhhHHHHHhhhcCC
Q 006200 147 EKNPDGQAMLTSTLIPQ 163 (657)
Q Consensus 147 ~~N~~~q~~L~~tl~p~ 163 (657)
|=|+-.|.|...-|+-.
T Consensus 476 yCNEKLQ~FFNerILke 492 (1259)
T KOG0163|consen 476 YCNEKLQKFFNERILKE 492 (1259)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44788898888888743
No 477
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=34.52 E-value=4.6e+02 Score=25.85 Aligned_cols=21 Identities=10% Similarity=0.123 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhHhHHHHHhh
Q 006200 595 AREEAQKESEAELNDLLVCLG 615 (657)
Q Consensus 595 ~~~e~~~~~~~e~~dLl~ll~ 615 (657)
+++.++.+++++..+|-+-.+
T Consensus 132 Ek~~a~~~l~~ei~~lav~~A 152 (184)
T CHL00019 132 EQQRAINQVRQQVFQLALQRA 152 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777776555
No 478
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=34.47 E-value=4e+02 Score=29.42 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=13.2
Q ss_pred HHHHhhhhhhhHHHHHHHHHHcC
Q 006200 610 LLVCLGQEQSKVEKLSARLLELG 632 (657)
Q Consensus 610 Ll~ll~d~~~K~~~~k~~L~~lg 632 (657)
+..||.+--.|++.++..|..+.
T Consensus 185 F~~vLNeKK~KIR~lq~~L~~~~ 207 (342)
T PF06632_consen 185 FVLVLNEKKAKIRELQRLLASAK 207 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHhh
Confidence 45566666666666666554443
No 479
>PLN02678 seryl-tRNA synthetase
Probab=34.30 E-value=4.1e+02 Score=30.40 Aligned_cols=29 Identities=24% Similarity=0.189 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006200 460 RLKAFVEKQCSEIQKLLGRNATLAEELAK 488 (657)
Q Consensus 460 ~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~ 488 (657)
.|-..-++...+++.|+.+...+..++.+
T Consensus 37 ~ld~~~r~l~~~~e~lr~erN~~sk~I~~ 65 (448)
T PLN02678 37 ALDKEWRQRQFELDSLRKEFNKLNKEVAK 65 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666677777777777766644
No 480
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=34.30 E-value=2.1e+02 Score=31.34 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 458 VKRLKAFVEKQCSEIQKLLGRNATLAEEL 486 (657)
Q Consensus 458 v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l 486 (657)
||.||+.+.+|+.+|..-.-++..+..++
T Consensus 149 VDtLKD~LeE~eeqLaeS~Re~eek~kE~ 177 (405)
T KOG2010|consen 149 VDTLKDVLEEQEEQLAESYRENEEKSKEL 177 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888777777755544444444443
No 481
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=34.18 E-value=1.2e+02 Score=27.69 Aligned_cols=28 Identities=18% Similarity=0.168 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 509 QVETLRKDLHEASQRLEILKEEKAQIES 536 (657)
Q Consensus 509 q~e~L~~~L~~~~~~~e~l~~e~~~~ea 536 (657)
|++++++++++++++++.|+.|...++.
T Consensus 35 q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 35 QVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3344444444444444444445444444
No 482
>PTZ00429 beta-adaptin; Provisional
Probab=33.64 E-value=5.6e+02 Score=31.32 Aligned_cols=30 Identities=17% Similarity=-0.097 Sum_probs=18.7
Q ss_pred hHHHHHHHHHhccCchhHH-hHHHHHHHHhh
Q 006200 117 AALNSILRIILRTSSMQEF-LAADRIFNSFC 146 (657)
Q Consensus 117 pal~~LL~~~L~~~~~~~r-~AA~~cf~ayl 146 (657)
+.+...+.-++...++..| .||..|+|.|-
T Consensus 139 e~l~~~lkk~L~D~~pYVRKtAalai~Kly~ 169 (746)
T PTZ00429 139 EYTLEPLRRAVADPDPYVRKTAAMGLGKLFH 169 (746)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 3344455556667778887 66666777543
No 483
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=33.52 E-value=5.5e+02 Score=26.42 Aligned_cols=119 Identities=20% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 462 KAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMY 541 (657)
Q Consensus 462 k~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~ 541 (657)
|..-++-..-+..|+..+......+...-| =..|++|+.+..+....++..+.+....+......
T Consensus 1 ~~~~~~~~~~~d~lq~~i~~as~~lNd~TG---------------Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~a 65 (207)
T PF05546_consen 1 KQLSKKLSFYMDSLQETIFTASQALNDVTG---------------YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDA 65 (207)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhccC---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhHHHhH-----------HHHhHHHHHhHhHHHHHHHHHcCCCCCCcccHHHHHHHHHHHHHHHHHHhHhHH
Q 006200 542 RNLAAKMESDLKSLS-----------DAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAEAREEAQKESEAELNDL 610 (657)
Q Consensus 542 ~~~a~~le~~l~~ls-----------~~~~~Le~~~~~le~e~~~lr~~~~~~~~~~l~~~~~~~~~e~~~~~~~e~~dL 610 (657)
-+.-+..|.+++.|= .++.+|=+.=+.++.+..+++. +-+++-.+.++..++|
T Consensus 66 i~~Rs~sQrEvn~LLqRK~sWs~~DleRFT~Lyr~dH~~e~~e~~ak~----------------~l~~aE~~~e~~~~~L 129 (207)
T PF05546_consen 66 IQQRSSSQREVNELLQRKHSWSPADLERFTELYRNDHENEQAEEEAKE----------------ALEEAEEKVEEAFDDL 129 (207)
T ss_pred HHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhhhhhHHHHHHHHH----------------HHHHHHHHHHHHHHHH
Q ss_pred H
Q 006200 611 L 611 (657)
Q Consensus 611 l 611 (657)
+
T Consensus 130 ~ 130 (207)
T PF05546_consen 130 M 130 (207)
T ss_pred H
No 484
>PRK14155 heat shock protein GrpE; Provisional
Probab=33.44 E-value=1.1e+02 Score=31.38 Aligned_cols=46 Identities=9% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006200 509 QVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKS 554 (657)
Q Consensus 509 q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ 554 (657)
+.+.|..++++++++++.+++...++.|+.++||+.+.+-..+..+
T Consensus 14 ~~~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~ 59 (208)
T PRK14155 14 EADDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARA 59 (208)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=33.32 E-value=3.8e+02 Score=24.53 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHH
Q 006200 508 VQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVK 574 (657)
Q Consensus 508 ~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~ 574 (657)
.+...|+.|...+++..=.-.+....++.++..-.+...+++.++.+|+=+..+|+.++..+..|+.
T Consensus 5 ~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 5 QEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=33.30 E-value=3.2e+02 Score=24.84 Aligned_cols=63 Identities=16% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHH
Q 006200 514 RKDLHEASQRLEILKEEKAQIESDSSMY--RNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKAL 576 (657)
Q Consensus 514 ~~~L~~~~~~~e~l~~e~~~~eae~~~~--~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~l 576 (657)
+..+++........+.....+|.+++.+ +....+++..+..++-....+++++..++..+.-|
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
No 487
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=33.30 E-value=1.6e+02 Score=26.99 Aligned_cols=43 Identities=26% Similarity=0.379 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKME 549 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le 549 (657)
+.++.+|-.++.++++....+-.|+++++-|...++....+.+
T Consensus 14 e~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 14 EQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 488
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.23 E-value=3.5e+02 Score=24.00 Aligned_cols=89 Identities=22% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 463 AFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYR 542 (657)
Q Consensus 463 ~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~ 542 (657)
...+.-..++..|+.++..|...+.+..|.. -.+..-.++..|.++|+.+-..+-.
T Consensus 12 ~~~e~~~~e~~~L~~~~~~L~~~~R~~~Ged--------L~~Ls~~eL~~LE~~Le~aL~~VR~---------------- 67 (100)
T PF01486_consen 12 SQHEELQQEIAKLRKENESLQKELRHLMGED--------LESLSLKELQQLEQQLESALKRVRS---------------- 67 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccc--------ccccchHHHHHHHHhhhhhHHHHHH----------------
Q ss_pred HHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHH
Q 006200 543 NLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKA 575 (657)
Q Consensus 543 ~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~ 575 (657)
.....+...+..|..+...|..+|..|.+++++
T Consensus 68 rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~e 100 (100)
T PF01486_consen 68 RKDQLLMEQIEELKKKERELEEENNQLRQKIEE 100 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 489
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=33.17 E-value=4.3e+02 Score=25.08 Aligned_cols=128 Identities=18% Similarity=0.250 Sum_probs=0.0
Q ss_pred cHHHHHHHHHhHHHHHHhhhhhcCCCCC-ccccchhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006200 410 DKHFVDIIKSLESSIRENIVDVYSRPKS-EVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAK 488 (657)
Q Consensus 410 D~~Fv~f~K~n~~~I~~ai~~~~~dP~~-e~~~~~~~~~~~~~~~s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~ 488 (657)
||.|+- ++++.-|.-||. +-|+.+ +-...-..+++. ...+-..|+..|.+--+.....-.....+...+
T Consensus 12 ~W~~~~--~~~~~pv~~al~--~ld~ss~g~~~~~~~f~~~----~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i-- 81 (142)
T PF04048_consen 12 EWPFML--TDDFNPVELALS--LLDDSSVGRAHRYQEFEEL----KKRIEKALQEVVNEHYQGFNSSIGSYSQILSSI-- 81 (142)
T ss_pred HHHHHh--cCCCcHHHHHHH--hcCCCCccHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred hcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHhHHHHhHH
Q 006200 489 IGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMES--DLKSLSDAYNSL 562 (657)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~--~l~~ls~~~~~L 562 (657)
...+..+..+++.|+++++.+..-+.++.++-.+...|+..+.-+.. .+.+.-+++++|
T Consensus 82 ---------------~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s~~~~~mi~iL~~Ie~l~~vP~kie~l 142 (142)
T PF04048_consen 82 ---------------SESQERIRELKESLQEAKSLLGCRREELKELWQRSQEYKEMIEILDQIEELRQVPDKIESL 142 (142)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcC
No 490
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=33.12 E-value=7.8e+02 Score=28.08 Aligned_cols=105 Identities=19% Similarity=0.213 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 454 DKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQ 533 (657)
Q Consensus 454 s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~ 533 (657)
.+.+.+.+.++++.-.++++.-++=+..|+++ ....+.+.+..++++.....+.|-.++.+
T Consensus 141 ~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~-------------------~~~~~~~~~~~e~~~l~~eE~~L~q~lk~ 201 (447)
T KOG2751|consen 141 MDVLLNKLDKEVEDAEDEVDTYKACLQRLEQQ-------------------NQDVSEEDLLKELKNLKEEEERLLQQLEE 201 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------------------CcccchHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhH---------------------HHHhHHHHHhHhHHHHHHHHH
Q 006200 534 IESDSSMYRNLAAKMESDLKSLS---------------------DAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 534 ~eae~~~~~~~a~~le~~l~~ls---------------------~~~~~Le~~~~~le~e~~~lr 577 (657)
++.+-.++-....+++..-..+. +.+.+|+.+..-...+++.++
T Consensus 202 le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~ 266 (447)
T KOG2751|consen 202 LEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLR 266 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHH
No 491
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=33.06 E-value=7.9e+02 Score=28.09 Aligned_cols=154 Identities=14% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 456 DYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIE 535 (657)
Q Consensus 456 ~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~e 535 (657)
++-..+|++=-.-++.|.+=.-+...+...++++. .-+++.++-.++++....++|+...++++
T Consensus 261 ~LEEq~reqElraeE~l~Ee~rrhrEil~k~eRea----------------sle~Enlqmr~qqleeentelRs~~arlk 324 (502)
T KOG0982|consen 261 MLEEQRREQELRAEESLSEEERRHREILIKKEREA----------------SLEKENLQMRDQQLEEENTELRSLIARLK 324 (502)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcCCCCCCcccHHHHHHHHHHHHHHHHHHhHhHHHHHhh
Q 006200 536 SDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAEAREEAQKESEAELNDLLVCLG 615 (657)
Q Consensus 536 ae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~~~~~~~~~l~~~~~~~~~e~~~~~~~e~~dLl~ll~ 615 (657)
+-.+.+-.--.++...|..+..++.-..+...+.-.-+....+ +.++.+|-..+++++++-+=+.-.
T Consensus 325 sl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~-------------ekeatqELieelrkelehlr~~kl 391 (502)
T KOG0982|consen 325 SLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQE-------------EKEATQELIEELRKELEHLRRRKL 391 (502)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhh-hhHHHHHHHHHHcCchhhhh
Q 006200 616 QEQ-SKVEKLSARLLELGEDVEKL 638 (657)
Q Consensus 616 d~~-~K~~~~k~~L~~lg~~v~~~ 638 (657)
+.+ .-+-+-.+|+.+|-++|-.+
T Consensus 392 ~~a~p~rgrsSaRe~eleqevkrL 415 (502)
T KOG0982|consen 392 VLANPVRGRSSAREIELEQEVKRL 415 (502)
T ss_pred HhhccccCchhHHHHHHHHHHHHh
No 492
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=32.95 E-value=5.1e+02 Score=30.50 Aligned_cols=101 Identities=15% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHhHHHHhHHHHHhHhHHHHHHHHHcC
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMES-------DLKSLSDAYNSLEQTNFHLEKEVKALKSG 579 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~-------~l~~ls~~~~~Le~~~~~le~e~~~lr~~ 579 (657)
....+.+++++++..+...+...++.. +.+.+.|++.+.+++. ++.+.......|-.+.....+.++.++
T Consensus 163 ~~~~~~~~~~~k~~~~~w~~~~~~Lp~-~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~-- 239 (555)
T TIGR03545 163 VETAEEIEKSLKAMQQKWKKRKKDLPN-KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAK-- 239 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHhHhHHHHHhhhhhhhHHHHHHHHHHc
Q 006200 580 GSSVSSPDVEAIKAEAREEAQKESEAELNDLLVCLGQEQSKVEKLSARLLEL 631 (657)
Q Consensus 580 ~~~~~~~~l~~~~~~~~~e~~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~l 631 (657)
.+++.+.+++--.+.++..=....-.||++.
T Consensus 240 ---------------------~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~~ 270 (555)
T TIGR03545 240 ---------------------NDLQNDKKQLKADLAELKKAPQNDLKRLENK 270 (555)
T ss_pred ---------------------HHHHHhHHHHHHHHHHHHhccHhHHHHHHHH
No 493
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=32.65 E-value=3.3e+02 Score=23.54 Aligned_cols=69 Identities=17% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 510 VETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 510 ~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
+-.+++-+.+.++..+.++.+...+..|....-..++++-.+++.-.++.+.+-.....+.+-++.+.+
T Consensus 21 l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l~~ 89 (90)
T PF06103_consen 21 LKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSELNS 89 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
No 494
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=32.55 E-value=8.6e+02 Score=28.39 Aligned_cols=171 Identities=15% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 006200 458 VKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIE-- 535 (657)
Q Consensus 458 v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~e-- 535 (657)
...++..+++..++..++..++..++.++.... ...+..+. ..+++.-.+.|....+-.+.+..-...+.
T Consensus 170 ~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe-------~~~l~~~E-~e~L~~e~~~L~n~e~i~~~~~~~~~~L~~~ 241 (563)
T TIGR00634 170 WLKARQQLKDRQQKEQELAQRLDFLQFQLEELE-------EADLQPGE-DEALEAEQQRLSNLEKLRELSQNALAALRGD 241 (563)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-------hCCcCCCc-HHHHHHHHHHHhCHHHHHHHHHHHHHHHhCC
Q ss_pred ------HHHHHHHHHHHHHHH----hHHHhHHHHhHHHHHhHhHHHHHHHHHcCCCCCCcccHHHHHHH-----------
Q 006200 536 ------SDSSMYRNLAAKMES----DLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAE----------- 594 (657)
Q Consensus 536 ------ae~~~~~~~a~~le~----~l~~ls~~~~~Le~~~~~le~e~~~lr~~~~~~~~~~l~~~~~~----------- 594 (657)
.-...+......++. .+..+...+++...++..+..++....+.+ ...+..++.....
T Consensus 242 ~~~~~~~~~~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l-~~dp~~L~ele~RL~~l~~LkrKy 320 (563)
T TIGR00634 242 VDVQEGSLLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQNYLDEL-EFDPERLNEIEERLAQIKRLKRKY 320 (563)
T ss_pred ccccccCHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHh
Q ss_pred -----HHHHHHHHHHHhHhHHHHH---hhhhhhhHHHHHHHHHHcCchhhh
Q 006200 595 -----AREEAQKESEAELNDLLVC---LGQEQSKVEKLSARLLELGEDVEK 637 (657)
Q Consensus 595 -----~~~e~~~~~~~e~~dLl~l---l~d~~~K~~~~k~~L~~lg~~v~~ 637 (657)
.-.+.+++.+++++.+--. +.+++.++.+++.++.+++..++.
T Consensus 321 g~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~ 371 (563)
T TIGR00634 321 GASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSL 371 (563)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=32.53 E-value=4.1e+02 Score=26.68 Aligned_cols=67 Identities=18% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 006200 465 VEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEI-LKEEKAQIESDSSMYRN 543 (657)
Q Consensus 465 i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~-l~~e~~~~eae~~~~~~ 543 (657)
......+|..|+.++..|+. ++..|+.+.+...+..++ ...+...++.|+..++.
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~------------------------~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~ 177 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEK------------------------QVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKK 177 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHh
Q 006200 544 LAAKMESDLKSL 555 (657)
Q Consensus 544 ~a~~le~~l~~l 555 (657)
....+...|++.
T Consensus 178 ~~~ql~~~l~~~ 189 (189)
T PF10211_consen 178 QNQQLKAQLEQI 189 (189)
T ss_pred HHHHHHHHHhcC
No 496
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=32.48 E-value=7.7e+02 Score=27.82 Aligned_cols=152 Identities=19% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCcchh--hhhhcccc--------------HHHHHHHHHHHHHHHHHHHHHHHHH-
Q 006200 469 CSEIQKLLGRNATLAEELAKIGGDGASQSE--QRASGALD--------------RVQVETLRKDLHEASQRLEILKEEK- 531 (657)
Q Consensus 469 ~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~--~~~~~~~~--------------~~q~e~L~~~L~~~~~~~e~l~~e~- 531 (657)
.++||.|+.++.....++..-+++..++.. .++...++ ++.++.|+++. ++.++.|..|+
T Consensus 297 ~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqH---qRELekLreEKd 373 (593)
T KOG4807|consen 297 EKEVQALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQH---QRELEKLREEKD 373 (593)
T ss_pred HHHHHHHHHHHHHHHHhccCchhhHhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q ss_pred --------HHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcCCCCCCcccH-------------HH
Q 006200 532 --------AQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDV-------------EA 590 (657)
Q Consensus 532 --------~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~~~~~~~~~l-------------~~ 590 (657)
+-+-+=-++-+.--++|+.+|.+...-....++=..+.-+++..++ .+| -+
T Consensus 374 rLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvq--------RELeVLSEQYSQKCLEna 445 (593)
T KOG4807|consen 374 RLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQ--------RELEVLSEQYSQKCLENA 445 (593)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHhhhhhhhHHHHHHHHHHc
Q 006200 591 IKAEAREEAQKESEAELNDLLVCLGQEQSKVEKLSARLLEL 631 (657)
Q Consensus 591 ~~~~~~~e~~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~l 631 (657)
..+.+.++++..++.=|..=-.|.+--.+=+.++-+....|
T Consensus 446 hLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrL 486 (593)
T KOG4807|consen 446 HLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRL 486 (593)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHH
No 497
>PF15353 HECA: Headcase protein family homologue
Probab=32.34 E-value=38 Score=31.01 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=0.0
Q ss_pred chhhHhhhhcCCCCCCch-hHHHHHHH
Q 006200 4 DPLISILKLRGSAYSFTQ-QKTINLLS 29 (657)
Q Consensus 4 ~~~~~~l~~~~~~~~W~~-Qk~~N~~~ 29 (657)
|.|+..|+--|..-.|++ ||..|+|.
T Consensus 54 ~~iL~~L~~~GraRsWse~QrrqnLWt 80 (107)
T PF15353_consen 54 DSILKYLKSTGRARSWSEKQRRQNLWT 80 (107)
T ss_pred HHHHHHHHhcccccCCCHHHHHHHHhH
No 498
>PLN02320 seryl-tRNA synthetase
Probab=32.23 E-value=2.5e+02 Score=32.70 Aligned_cols=69 Identities=16% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHH
Q 006200 508 VQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNL--AAKMESDLKSLSDAYNSLEQTNFHLEKEVKAL 576 (657)
Q Consensus 508 ~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~--a~~le~~l~~ls~~~~~Le~~~~~le~e~~~l 576 (657)
.++-+|..+..+...+++.+++++..+-.++...++. ++++..+.+.+.+.+..||.+...+++++..+
T Consensus 93 d~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 163 (502)
T PLN02320 93 ELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLE 163 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=32.14 E-value=7.5e+02 Score=27.54 Aligned_cols=152 Identities=18% Similarity=0.181 Sum_probs=0.0
Q ss_pred ccccchhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHH
Q 006200 438 EVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDL 517 (657)
Q Consensus 438 e~~~~~~~~~~~~~~~s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L 517 (657)
...+.|..|... +...+.+-...+..-..--..+..-+.....++.... ..-..+|++.+
T Consensus 194 ~~~~tp~~W~~~----s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~----------------~~vn~al~~Ri 253 (384)
T PF03148_consen 194 KNSSTPESWEEF----SNENIQRAEKERQSSAQLREDIDSILEQTANDLRAQA----------------DAVNAALRKRI 253 (384)
T ss_pred ccCCChHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----hHHHHhHHHHHhHh-------------HHHHHHHHHcCC
Q 006200 518 HEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKS----LSDAYNSLEQTNFH-------------LEKEVKALKSGG 580 (657)
Q Consensus 518 ~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~----ls~~~~~Le~~~~~-------------le~e~~~lr~~~ 580 (657)
.+.+.....|+-++.+...|+.++...+..++..+.. ++-+-.-|+...+| |-.|++.+++.+
T Consensus 254 ~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i 333 (384)
T PF03148_consen 254 HETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESI 333 (384)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHH
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHHhHhHHHHHhhhhhhhHH
Q 006200 581 SSVSSPDVEAIKAEAREEAQKESEAELNDLLVCLGQEQSKVE 622 (657)
Q Consensus 581 ~~~~~~~l~~~~~~~~~e~~~~~~~e~~dLl~ll~d~~~K~~ 622 (657)
. .-.+.+.+++..+..|.-....++..+.
T Consensus 334 ~-------------~L~~~L~~a~~~l~~L~~~~~~Le~di~ 362 (384)
T PF03148_consen 334 E-------------ALQEKLDEAEASLQKLERTRLRLEEDIA 362 (384)
T ss_pred H-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=32.00 E-value=3.1e+02 Score=31.83 Aligned_cols=70 Identities=20% Similarity=0.366 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 454 DKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQ 533 (657)
Q Consensus 454 s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~ 533 (657)
|..||++|-+.++.+-+.+..++.....+.+ ...+++.++.+..-.++.+..+-+.
T Consensus 430 SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~------------------------kr~e~~~e~~~l~pkL~~l~~~Tr~ 485 (507)
T PF05600_consen 430 SPRYVDRLVESLQQKLKQEEKLRRKREDLEE------------------------KRQEAQEEQQELEPKLDALVERTRE 485 (507)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhHHHHh
Q 006200 534 IESDSSMYRNLAAKMESDLKSLSDAYN 560 (657)
Q Consensus 534 ~eae~~~~~~~a~~le~~l~~ls~~~~ 560 (657)
++.+++. .+|..|+
T Consensus 486 Lq~~iE~-------------~ISk~y~ 499 (507)
T PF05600_consen 486 LQKQIEA-------------DISKRYK 499 (507)
T ss_pred HHHHHHH-------------HHHHHcC
Done!