Query 006200
Match_columns 657
No_of_seqs 181 out of 218
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 18:41:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006200.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006200hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3grl_A General vesicular trans 100.0 3E-86 1E-90 746.8 36.1 379 2-439 255-636 (651)
2 4hxt_A De novo protein OR329; 97.2 0.052 1.8E-06 52.3 21.9 209 54-325 35-243 (252)
3 1xqr_A HSPBP1 protein; armadil 97.2 0.026 8.7E-07 58.6 20.7 221 27-319 57-283 (296)
4 4db8_A Armadillo-repeat protei 96.7 0.19 6.6E-06 48.7 21.2 202 54-319 45-247 (252)
5 1xqr_A HSPBP1 protein; armadil 96.6 0.039 1.3E-06 57.3 15.4 132 54-221 115-247 (296)
6 1c1g_A Tropomyosin; contractIl 96.5 0.42 1.4E-05 46.5 21.7 24 461-484 18-41 (284)
7 1c1g_A Tropomyosin; contractIl 96.4 0.55 1.9E-05 45.6 22.0 37 513-549 81-117 (284)
8 2v71_A Nuclear distribution pr 96.0 1.2 4.2E-05 43.3 22.5 31 454-484 8-38 (189)
9 4db6_A Armadillo repeat protei 95.9 0.32 1.1E-05 45.9 17.0 132 54-221 45-176 (210)
10 3na7_A HP0958; flagellar bioge 95.9 0.5 1.7E-05 47.8 19.0 45 509-553 40-84 (256)
11 2dfs_A Myosin-5A; myosin-V, in 95.8 0.22 7.5E-06 60.4 18.8 11 85-95 355-365 (1080)
12 4hxt_A De novo protein OR329; 95.7 1.2 4.1E-05 42.5 20.3 194 63-319 2-195 (252)
13 1i84_S Smooth muscle myosin he 95.6 0.044 1.5E-06 67.1 11.9 43 599-641 1005-1047(1184)
14 2v71_A Nuclear distribution pr 95.6 0.54 1.9E-05 45.8 17.1 144 413-574 11-154 (189)
15 1i84_S Smooth muscle myosin he 95.6 0.026 8.8E-07 69.2 9.5 28 459-486 867-894 (1184)
16 3na7_A HP0958; flagellar bioge 95.6 1.9 6.6E-05 43.5 22.0 45 532-576 93-137 (256)
17 3tpo_A Importin subunit alpha- 95.5 0.55 1.9E-05 51.7 19.4 253 7-319 98-360 (529)
18 3ul1_B Importin subunit alpha- 95.2 4.5 0.00015 44.3 25.8 231 60-361 229-461 (510)
19 4db6_A Armadillo repeat protei 95.2 1.7 5.9E-05 40.6 19.3 194 63-319 12-205 (210)
20 4b8j_A Importin subunit alpha- 95.0 2.6 9E-05 45.7 22.4 204 55-320 109-312 (528)
21 1wa5_B Importin alpha subunit; 95.0 2.1 7E-05 46.7 21.6 202 54-319 164-366 (530)
22 4b8j_A Importin subunit alpha- 94.7 4.3 0.00015 44.0 23.3 205 54-320 151-355 (528)
23 3o0z_A RHO-associated protein 94.7 1.5 5.2E-05 41.8 16.8 113 456-578 27-150 (168)
24 3tpo_A Importin subunit alpha- 94.7 4.9 0.00017 44.1 23.9 231 60-361 248-480 (529)
25 1wa5_B Importin alpha subunit; 94.7 1.2 4E-05 48.7 18.8 218 29-319 106-324 (530)
26 3vkg_A Dynein heavy chain, cyt 94.6 0.72 2.5E-05 61.5 19.1 25 455-479 1898-1922(3245)
27 3vkg_A Dynein heavy chain, cyt 94.5 1.6 5.6E-05 58.2 21.9 12 272-283 1538-1549(3245)
28 3grl_A General vesicular trans 94.4 3.4 0.00012 47.3 21.7 185 2-225 209-407 (651)
29 2jdq_A Importin alpha-1 subuni 94.1 5 0.00017 41.9 21.5 203 54-319 98-301 (450)
30 2dfs_A Myosin-5A; myosin-V, in 94.0 0.45 1.6E-05 57.7 14.4 13 474-486 925-937 (1080)
31 3oja_B Anopheles plasmodium-re 93.7 1.4 4.7E-05 49.2 16.9 38 541-578 542-579 (597)
32 3ul1_B Importin subunit alpha- 93.5 2 6.9E-05 47.1 17.6 202 54-319 134-341 (510)
33 4db8_A Armadillo-repeat protei 93.5 2.9 9.9E-05 40.2 16.9 133 54-222 87-219 (252)
34 3o0z_A RHO-associated protein 93.4 2.2 7.5E-05 40.7 14.9 48 530-577 63-110 (168)
35 2jee_A YIIU; FTSZ, septum, coi 92.8 1.9 6.3E-05 36.4 11.9 63 454-540 4-66 (81)
36 3hnw_A Uncharacterized protein 92.7 2.6 8.7E-05 39.0 14.1 20 453-472 25-44 (138)
37 3u1c_A Tropomyosin alpha-1 cha 92.2 4 0.00014 35.6 14.0 67 511-577 5-71 (101)
38 2jdq_A Importin alpha-1 subuni 91.3 15 0.00052 38.1 21.6 206 54-322 140-346 (450)
39 3nmw_A APC variant protein; AR 91.3 11 0.00038 39.6 19.2 215 54-319 64-288 (354)
40 2ocy_A RAB guanine nucleotide 90.9 1.5 5.2E-05 41.3 10.5 13 508-520 20-32 (154)
41 3ol1_A Vimentin; structural ge 89.8 5.2 0.00018 35.9 12.8 30 599-628 70-99 (119)
42 3i00_A HIP-I, huntingtin-inter 89.7 3.4 0.00011 37.4 11.3 64 457-540 16-79 (120)
43 2eqb_B RAB guanine nucleotide 89.0 7.1 0.00024 33.9 12.3 35 509-543 27-61 (97)
44 3nmz_A APC variant protein; pr 88.9 21 0.0007 39.0 19.4 216 53-319 179-404 (458)
45 3tnu_B Keratin, type II cytosk 88.7 4.3 0.00015 36.8 11.5 24 605-628 103-126 (129)
46 3tnu_A Keratin, type I cytoske 88.5 4 0.00014 37.1 11.2 24 605-628 105-128 (131)
47 3a7p_A Autophagy protein 16; c 88.3 3.9 0.00013 38.3 11.0 63 515-577 68-130 (152)
48 3ol1_A Vimentin; structural ge 88.1 14 0.00048 33.0 16.1 7 571-577 108-114 (119)
49 2jee_A YIIU; FTSZ, septum, coi 88.0 7.7 0.00026 32.7 11.5 46 510-555 29-74 (81)
50 3swk_A Vimentin; cytoskeleton, 87.6 4.4 0.00015 34.4 10.2 32 597-628 48-79 (86)
51 2fxo_A Myosin heavy chain, car 87.6 16 0.00054 33.0 16.5 8 602-609 115-122 (129)
52 2efr_A General control protein 87.3 19 0.00066 33.8 15.7 21 600-620 121-141 (155)
53 3u59_A Tropomyosin beta chain; 87.2 14 0.00048 32.0 14.0 67 511-577 5-71 (101)
54 1xm9_A Plakophilin 1; armadill 86.2 39 0.0013 36.2 21.7 127 1-160 2-128 (457)
55 3swk_A Vimentin; cytoskeleton, 85.8 4.2 0.00015 34.5 9.1 11 511-521 3-13 (86)
56 3tt9_A Plakophilin-2; cell adh 85.3 21 0.00072 35.4 15.5 191 1-248 8-204 (233)
57 2v66_B Nuclear distribution pr 85.2 20 0.00068 31.9 15.1 64 511-574 38-101 (111)
58 3tnu_B Keratin, type II cytosk 84.9 21 0.00072 32.1 14.0 32 455-486 35-66 (129)
59 1ic2_A Tropomyosin alpha chain 84.6 7.4 0.00025 32.4 9.9 46 532-577 23-68 (81)
60 3ghg_A Fibrinogen alpha chain; 84.4 4.6 0.00016 44.6 10.7 26 461-489 51-76 (562)
61 1jdh_A Beta-catenin; beta-cate 83.5 49 0.0017 35.0 23.1 91 54-157 92-182 (529)
62 3hnw_A Uncharacterized protein 83.4 6.1 0.00021 36.4 9.7 26 549-574 109-134 (138)
63 3tnu_A Keratin, type I cytoske 83.2 21 0.0007 32.3 13.1 29 458-486 40-68 (131)
64 3okq_A BUD site selection prot 82.7 30 0.001 31.9 15.6 77 452-540 6-94 (141)
65 3mq9_A Bone marrow stromal ant 81.7 13 0.00046 40.1 13.4 12 513-524 402-413 (471)
66 2z6h_A Catenin beta-1, beta-ca 81.3 61 0.0021 36.1 19.1 187 58-305 9-195 (644)
67 3nmw_A APC variant protein; AR 81.0 8.1 0.00028 40.6 11.0 87 54-153 254-340 (354)
68 3trt_A Vimentin; cytoskeleton, 79.3 22 0.00076 28.9 10.8 22 555-576 54-75 (77)
69 3nmz_A APC variant protein; pr 78.4 10 0.00035 41.4 11.1 85 54-151 370-454 (458)
70 1go4_E MAD1 (mitotic arrest de 77.8 11 0.00039 32.9 8.8 36 453-488 9-44 (100)
71 1gk4_A Vimentin; intermediate 76.1 33 0.0011 28.6 11.4 16 471-486 2-17 (84)
72 3now_A UNC-45 protein, SD10334 75.8 33 0.0011 40.3 14.9 132 54-220 614-745 (810)
73 2v4h_A NF-kappa-B essential mo 75.8 40 0.0014 29.8 11.8 33 453-485 21-53 (110)
74 3u1c_A Tropomyosin alpha-1 cha 75.1 40 0.0014 29.1 14.1 17 535-551 43-59 (101)
75 3s4r_A Vimentin; alpha-helix, 74.9 33 0.0011 29.3 11.0 35 507-548 55-89 (93)
76 3bas_A Myosin heavy chain, str 74.2 34 0.0012 28.9 10.8 46 525-577 38-83 (89)
77 2z6g_A B-catenin; FULL-length, 74.1 1.3E+02 0.0045 34.6 22.1 184 61-305 148-331 (780)
78 2v4h_A NF-kappa-B essential mo 73.9 18 0.00062 32.0 9.1 26 461-486 36-61 (110)
79 1gk4_A Vimentin; intermediate 72.8 29 0.001 29.0 10.0 36 509-544 41-76 (84)
80 2xzr_A Immunoglobulin-binding 72.5 47 0.0016 28.7 14.9 63 515-577 41-103 (114)
81 3iv1_A Tumor susceptibility ge 71.3 26 0.0009 29.2 9.0 51 528-578 17-67 (78)
82 2q6q_A Spindle POLE BODY compo 71.2 34 0.0012 27.7 9.2 56 509-564 4-59 (74)
83 1x8y_A Lamin A/C; structural p 71.2 19 0.00065 30.3 8.5 10 568-577 67-76 (86)
84 3u59_A Tropomyosin beta chain; 70.8 51 0.0017 28.4 13.7 6 571-576 86-91 (101)
85 3iox_A AGI/II, PA; alpha helix 70.1 90 0.0031 34.4 15.5 102 460-577 6-107 (497)
86 1x8y_A Lamin A/C; structural p 69.1 19 0.00065 30.3 8.1 39 508-546 42-80 (86)
87 1m1j_B Fibrinogen beta chain; 68.8 1.2E+02 0.0042 33.2 16.4 15 470-484 100-114 (464)
88 3q8t_A Beclin-1; autophagy, AT 68.5 57 0.0019 28.0 11.5 17 559-575 62-78 (96)
89 2eqb_B RAB guanine nucleotide 67.9 60 0.0021 28.1 13.5 49 508-556 5-53 (97)
90 3l6x_A Catenin delta-1; cateni 67.6 1.1E+02 0.0038 34.4 16.4 141 54-223 81-232 (584)
91 1xm9_A Plakophilin 1; armadill 67.5 32 0.0011 36.9 11.6 136 56-219 276-413 (457)
92 3cve_A Homer protein homolog 1 67.2 43 0.0015 27.5 9.4 67 554-633 4-70 (72)
93 2xnx_M M protein, M1-BC1; cell 67.2 14 0.00047 34.3 7.2 7 586-592 122-128 (146)
94 1l8d_A DNA double-strand break 67.2 61 0.0021 27.9 11.5 37 513-549 8-44 (112)
95 3a7p_A Autophagy protein 16; c 66.9 61 0.0021 30.3 11.5 34 511-544 85-118 (152)
96 3mq7_A Bone marrow stromal ant 66.8 52 0.0018 29.4 10.5 8 456-463 12-19 (121)
97 1fxk_A Prefoldin; archaeal pro 66.8 51 0.0017 28.0 10.6 33 517-549 10-42 (107)
98 1ic2_A Tropomyosin alpha chain 66.7 42 0.0015 27.7 9.6 36 526-561 31-66 (81)
99 1wt6_A Myotonin-protein kinase 66.4 52 0.0018 27.5 9.8 47 533-579 28-74 (81)
100 3now_A UNC-45 protein, SD10334 66.2 2.1E+02 0.007 33.6 20.7 201 57-319 489-690 (810)
101 4dk0_A Putative MACA; alpha-ha 66.0 27 0.00092 36.1 10.3 16 562-577 134-149 (369)
102 2zqm_A Prefoldin beta subunit 66.0 65 0.0022 27.8 13.0 40 510-549 8-47 (117)
103 1deq_A Fibrinogen (alpha chain 65.9 60 0.0021 34.6 12.7 89 461-553 54-158 (390)
104 3ghg_A Fibrinogen alpha chain; 65.8 50 0.0017 36.6 12.4 41 513-553 115-155 (562)
105 1nlw_A MAD protein, MAX dimeri 65.6 23 0.00078 29.5 7.7 63 414-487 13-78 (80)
106 2w83_C C-JUN-amino-terminal ki 65.6 40 0.0014 27.9 8.8 16 469-484 8-23 (77)
107 1m1j_B Fibrinogen beta chain; 65.4 1.2E+02 0.004 33.4 15.4 14 615-628 178-191 (464)
108 3cvf_A Homer-3, homer protein 64.4 25 0.00084 29.4 7.6 30 549-578 5-34 (79)
109 4emc_A Monopolin complex subun 64.2 28 0.00097 33.6 9.0 30 457-486 7-36 (190)
110 3tul_A Cell invasion protein S 64.1 71 0.0024 29.6 11.2 63 516-578 53-121 (158)
111 1jdh_A Beta-catenin; beta-cate 64.0 1.5E+02 0.0051 31.2 25.4 224 54-319 134-381 (529)
112 2yy0_A C-MYC-binding protein; 63.6 8.1 0.00028 29.8 4.2 34 506-539 17-50 (53)
113 3oja_A Leucine-rich immune mol 63.1 83 0.0028 33.9 13.9 22 599-620 450-471 (487)
114 1go4_E MAD1 (mitotic arrest de 62.9 33 0.0011 29.9 8.4 67 507-578 11-89 (100)
115 1fmh_A General control protein 61.5 10 0.00035 25.6 3.8 24 554-577 5-28 (33)
116 2lw1_A ABC transporter ATP-bin 61.3 31 0.0011 29.0 8.0 27 514-540 21-47 (89)
117 1ses_A Seryl-tRNA synthetase; 61.3 70 0.0024 34.5 12.8 16 414-429 4-19 (421)
118 1w63_A Adapter-related protein 61.2 68 0.0023 35.9 13.2 148 79-286 120-271 (618)
119 2z6h_A Catenin beta-1, beta-ca 60.5 2.1E+02 0.007 31.7 25.7 91 54-157 89-179 (644)
120 4gkw_A Spindle assembly abnorm 60.3 1E+02 0.0035 28.1 12.3 30 457-486 47-76 (167)
121 1m1j_A Fibrinogen alpha subuni 60.3 1.4E+02 0.0049 32.6 14.5 28 461-491 52-79 (491)
122 3nmd_A CGMP dependent protein 59.3 29 0.001 28.5 7.0 30 457-486 20-49 (72)
123 4dk0_A Putative MACA; alpha-ha 59.3 37 0.0012 35.1 9.9 26 462-487 69-94 (369)
124 2e7s_A RAB guanine nucleotide 58.3 61 0.0021 29.7 9.8 37 507-543 45-81 (135)
125 1deb_A APC protein, adenomatou 58.1 49 0.0017 25.2 7.4 20 511-530 6-25 (54)
126 1t2k_D Cyclic-AMP-dependent tr 58.0 19 0.00063 28.3 5.6 34 544-577 23-56 (61)
127 1m1j_C Fibrinogen gamma chain; 57.1 1.7E+02 0.006 31.4 14.8 30 457-486 28-57 (409)
128 1l8d_A DNA double-strand break 57.0 86 0.0029 26.9 10.4 18 467-484 7-24 (112)
129 1x79_B RAB GTPase binding effe 56.3 1.1E+02 0.0037 27.2 12.5 16 534-549 57-72 (112)
130 1nkp_B MAX protein, MYC proto- 55.7 30 0.001 28.6 6.8 37 454-490 45-81 (83)
131 2xv5_A Lamin-A/C; structural p 55.6 69 0.0024 26.3 8.8 33 513-545 24-56 (74)
132 3q8t_A Beclin-1; autophagy, AT 54.7 1E+02 0.0035 26.4 14.9 33 545-577 62-94 (96)
133 2lw1_A ABC transporter ATP-bin 54.5 25 0.00087 29.6 6.2 27 595-621 60-86 (89)
134 2e7s_A RAB guanine nucleotide 54.2 29 0.00098 31.9 6.8 25 601-625 106-130 (135)
135 1z56_A Ligase interacting fact 54.1 1.6 5.5E-05 43.6 -1.6 76 541-640 155-242 (246)
136 2oqq_A Transcription factor HY 54.1 22 0.00076 26.1 4.8 33 546-578 6-38 (42)
137 2w83_C C-JUN-amino-terminal ki 53.6 95 0.0032 25.7 9.4 6 508-513 9-14 (77)
138 3c3g_A Alpha/beta peptide with 53.0 16 0.00055 25.4 3.7 26 553-578 3-28 (33)
139 1wle_A Seryl-tRNA synthetase; 52.6 73 0.0025 35.3 11.2 32 546-577 119-150 (501)
140 1kd8_A GABH AIV, GCN4 acid bas 52.1 13 0.00044 26.4 3.2 27 552-578 3-29 (36)
141 2dq0_A Seryl-tRNA synthetase; 51.2 85 0.0029 34.2 11.4 16 414-429 4-19 (455)
142 1ik9_A DNA repair protein XRCC 51.0 1.1E+02 0.0036 30.1 10.9 13 472-484 134-146 (213)
143 3iox_A AGI/II, PA; alpha helix 51.0 2.3E+02 0.0078 31.3 14.4 33 600-632 75-107 (497)
144 1vcs_A Vesicle transport throu 50.6 22 0.00075 30.8 5.3 25 507-531 37-61 (102)
145 2v66_B Nuclear distribution pr 50.6 1.3E+02 0.0046 26.5 14.0 53 509-564 18-70 (111)
146 2oto_A M protein; helical coil 50.6 1.5E+02 0.0052 27.2 14.6 10 475-484 27-36 (155)
147 2hy6_A General control protein 50.5 16 0.00054 25.6 3.4 27 552-578 3-29 (34)
148 3m91_A Proteasome-associated A 50.2 62 0.0021 24.8 7.1 36 508-543 9-44 (51)
149 3i00_A HIP-I, huntingtin-inter 50.0 1.4E+02 0.0048 26.7 10.7 14 565-578 69-82 (120)
150 4gkw_A Spindle assembly abnorm 50.0 1.5E+02 0.0052 27.0 16.7 42 515-556 46-87 (167)
151 1ci6_A Transcription factor AT 49.9 30 0.001 27.4 5.6 30 548-577 28-57 (63)
152 2z6g_A B-catenin; FULL-length, 49.9 3.4E+02 0.012 31.1 24.5 91 54-157 225-315 (780)
153 3c3f_A Alpha/beta peptide with 49.7 19 0.00065 25.2 3.7 27 552-578 3-29 (34)
154 3m48_A General control protein 49.5 16 0.00054 25.5 3.2 26 553-578 3-28 (33)
155 3mq9_A Bone marrow stromal ant 49.1 2E+02 0.0069 30.6 14.0 7 411-417 291-298 (471)
156 1uo4_A General control protein 48.7 17 0.0006 25.4 3.4 27 552-578 3-29 (34)
157 3mq7_A Bone marrow stromal ant 48.5 1.5E+02 0.0051 26.5 13.4 22 533-554 43-64 (121)
158 4ani_A Protein GRPE; chaperone 48.5 43 0.0015 33.0 7.7 45 508-552 59-103 (213)
159 2oxj_A Hybrid alpha/beta pepti 48.1 21 0.00072 25.0 3.7 27 552-578 3-29 (34)
160 3a7o_A Autophagy protein 16; c 48.0 1.1E+02 0.0038 24.9 8.8 23 551-573 47-69 (75)
161 3a7o_A Autophagy protein 16; c 48.0 1.1E+02 0.0037 25.0 8.4 22 457-478 19-40 (75)
162 3l6x_A Catenin delta-1; cateni 47.8 1.3E+02 0.0045 33.8 12.6 93 54-158 387-486 (584)
163 1jcd_A Major outer membrane li 47.5 63 0.0022 24.8 6.8 7 571-577 25-31 (52)
164 1x79_B RAB GTPase binding effe 47.4 1.5E+02 0.0052 26.2 11.4 35 531-565 40-74 (112)
165 2dq0_A Seryl-tRNA synthetase; 47.2 61 0.0021 35.4 9.4 33 546-578 72-104 (455)
166 3m91_A Proteasome-associated A 47.1 52 0.0018 25.2 6.2 27 552-578 11-37 (51)
167 3qne_A Seryl-tRNA synthetase, 46.7 72 0.0025 35.2 9.9 32 546-577 74-105 (485)
168 2wq1_A General control protein 46.0 24 0.00082 24.6 3.7 26 553-578 3-28 (33)
169 3cve_A Homer protein homolog 1 45.9 1.2E+02 0.0042 24.8 9.9 14 527-540 19-32 (72)
170 3onj_A T-snare VTI1; helix, HA 45.9 1.4E+02 0.0048 25.4 10.2 28 507-534 33-60 (97)
171 2i1j_A Moesin; FERM, coiled-co 45.5 47 0.0016 37.3 8.4 65 514-578 334-398 (575)
172 2ocy_A RAB guanine nucleotide 45.0 2E+02 0.0068 26.9 17.2 34 508-541 58-91 (154)
173 2efr_A General control protein 44.8 2E+02 0.0068 26.9 21.2 18 595-612 95-112 (155)
174 1kd8_B GABH BLL, GCN4 acid bas 44.3 26 0.00087 24.9 3.7 27 552-578 3-29 (36)
175 1wle_A Seryl-tRNA synthetase; 43.8 2.8E+02 0.0095 30.6 14.1 65 406-488 38-102 (501)
176 2xnx_M M protein, M1-BC1; cell 43.7 73 0.0025 29.5 7.8 22 535-556 86-107 (146)
177 1ci6_A Transcription factor AT 43.6 73 0.0025 25.1 6.9 36 510-545 25-60 (63)
178 1nkp_A C-MYC, MYC proto-oncoge 43.3 74 0.0025 26.7 7.4 67 413-490 17-86 (88)
179 4h22_A Leucine-rich repeat fli 43.2 1.1E+02 0.0036 26.9 8.3 15 458-472 32-46 (103)
180 4etp_A Kinesin-like protein KA 43.0 50 0.0017 35.4 7.8 41 537-577 18-58 (403)
181 1jnm_A Proto-oncogene C-JUN; B 42.6 25 0.00087 27.6 4.1 34 544-577 23-56 (62)
182 2wt7_A Proto-oncogene protein 42.6 45 0.0015 26.3 5.6 6 568-573 48-53 (63)
183 2pms_C Pneumococcal surface pr 42.6 69 0.0024 29.0 7.3 24 554-577 65-88 (125)
184 1deb_A APC protein, adenomatou 41.7 1.1E+02 0.0039 23.3 7.1 20 530-549 32-51 (54)
185 4h22_A Leucine-rich repeat fli 41.6 1.2E+02 0.0041 26.5 8.4 47 508-554 30-76 (103)
186 3mov_A Lamin-B1; LMNB1, B-type 40.5 1.7E+02 0.0059 24.9 11.2 19 526-544 69-87 (95)
187 3mov_A Lamin-B1; LMNB1, B-type 40.3 1.2E+02 0.0042 25.9 8.4 19 559-577 67-85 (95)
188 1t6f_A Geminin; coiled-coil, c 40.2 33 0.0011 24.3 3.8 25 460-484 11-35 (37)
189 2akf_A Coronin-1A; coiled coil 40.0 29 0.00098 23.5 3.2 27 547-573 3-29 (32)
190 3he5_B Synzip2; heterodimeric 39.9 75 0.0026 23.4 5.8 14 560-573 34-47 (52)
191 3fpp_A Macrolide-specific effl 39.8 99 0.0034 31.4 9.3 26 517-542 71-96 (341)
192 3m9b_A Proteasome-associated A 39.4 32 0.0011 34.7 5.2 30 509-538 55-84 (251)
193 1jcd_A Major outer membrane li 39.3 1.3E+02 0.0044 23.1 7.5 28 509-536 5-32 (52)
194 1ses_A Seryl-tRNA synthetase; 39.2 81 0.0028 34.0 8.8 67 512-578 32-99 (421)
195 2r2v_A GCN4 leucine zipper; co 39.0 35 0.0012 23.9 3.7 27 552-578 3-29 (34)
196 2bni_A General control protein 38.8 31 0.0011 24.2 3.4 27 552-578 3-29 (34)
197 3s4r_A Vimentin; alpha-helix, 38.6 1.8E+02 0.0062 24.6 11.6 14 471-484 10-23 (93)
198 3m9b_A Proteasome-associated A 38.5 28 0.00097 35.1 4.6 31 548-578 66-96 (251)
199 1fxk_C Protein (prefoldin); ar 38.5 2.1E+02 0.0071 25.3 12.8 40 510-549 3-42 (133)
200 2efl_A Formin-binding protein 38.4 3E+02 0.01 27.1 17.9 51 528-578 115-165 (305)
201 2b9c_A Striated-muscle alpha t 38.3 2.4E+02 0.0082 26.0 13.8 11 620-630 130-140 (147)
202 4emc_A Monopolin complex subun 37.7 1.3E+02 0.0045 29.0 8.8 34 544-577 21-54 (190)
203 2no2_A HIP-I, huntingtin-inter 37.5 2.1E+02 0.0071 25.0 14.4 30 512-541 12-41 (107)
204 2ke4_A CDC42-interacting prote 37.3 1.3E+02 0.0044 26.0 8.0 8 478-485 23-30 (98)
205 3lay_A Zinc resistance-associa 36.9 2.8E+02 0.0095 26.3 11.1 60 453-522 68-127 (175)
206 2f1m_A Acriflavine resistance 36.8 1.9E+02 0.0064 28.3 10.5 29 462-490 59-87 (277)
207 3s9g_A Protein hexim1; cyclin 35.7 2.2E+02 0.0074 24.7 9.9 53 527-579 42-94 (104)
208 1deq_A Fibrinogen (alpha chain 34.0 4.6E+02 0.016 27.9 14.7 35 453-487 85-119 (390)
209 2dq3_A Seryl-tRNA synthetase; 33.4 2.1E+02 0.0072 30.7 10.9 59 414-489 4-63 (425)
210 3qne_A Seryl-tRNA synthetase, 33.0 99 0.0034 34.1 8.2 25 463-487 40-64 (485)
211 3hhm_B NISH2 P85alpha; PI3KCA, 32.6 4.7E+02 0.016 27.6 13.3 127 508-654 147-294 (373)
212 2b5u_A Colicin E3; high resolu 32.5 2.3E+02 0.0079 31.3 10.7 66 511-576 294-368 (551)
213 2xoa_A Ryanodine receptor 1; m 32.1 39 0.0013 37.9 5.0 57 54-111 473-546 (559)
214 2i1j_A Moesin; FERM, coiled-co 31.8 72 0.0024 35.9 7.1 46 528-573 334-379 (575)
215 1gk7_A Vimentin; intermediate 31.3 50 0.0017 23.9 3.7 29 546-574 9-37 (39)
216 2qyw_A Vesicle transport throu 31.1 2.5E+02 0.0086 24.0 11.2 25 507-531 48-72 (102)
217 3lss_A Seryl-tRNA synthetase; 31.1 2E+02 0.0069 31.6 10.3 26 552-577 113-138 (484)
218 4e81_A Chaperone protein DNAK; 30.7 2.9E+02 0.0098 26.8 10.5 30 600-631 174-203 (219)
219 2vgl_B AP-2 complex subunit be 30.6 2E+02 0.0069 31.6 10.5 56 79-151 99-154 (591)
220 2f1m_A Acriflavine resistance 30.6 1E+02 0.0034 30.4 7.3 12 509-520 61-72 (277)
221 3qh9_A Liprin-beta-2; coiled-c 30.5 2.4E+02 0.0081 23.6 9.5 33 510-542 21-53 (81)
222 1gk6_A Vimentin; intermediate 29.6 1.6E+02 0.0055 22.8 6.7 35 511-545 17-51 (59)
223 4etp_A Kinesin-like protein KA 29.5 1.1E+02 0.0039 32.7 7.9 45 511-555 6-50 (403)
224 2xdj_A Uncharacterized protein 29.4 2.5E+02 0.0085 23.4 9.1 27 529-555 27-53 (83)
225 1ayz_A UBC2, ubiquitin-conjuga 29.3 16 0.00056 34.4 1.1 7 354-360 13-19 (169)
226 3opb_A SWI5-dependent HO expre 29.1 7.4E+02 0.025 28.8 18.3 108 54-164 489-637 (778)
227 3ibp_A Chromosome partition pr 28.5 5E+02 0.017 26.7 11.9 11 600-610 92-102 (302)
228 2fv2_A RCD1 required for cell 28.4 66 0.0023 32.7 5.4 98 199-318 72-169 (268)
229 4b6x_A AVRRPS4, avirulence pro 28.1 2.6E+02 0.009 23.3 9.4 26 459-484 25-50 (90)
230 2ve7_C Kinetochore protein NUF 28.0 41 0.0014 33.8 3.9 19 410-428 108-126 (250)
231 2yy0_A C-MYC-binding protein; 27.7 88 0.003 24.0 4.8 31 457-487 20-50 (53)
232 1u00_A HSC66, chaperone protei 27.2 3.6E+02 0.012 26.0 10.6 13 505-517 116-128 (227)
233 2dq3_A Seryl-tRNA synthetase; 27.2 54 0.0019 35.4 4.9 63 515-577 37-102 (425)
234 3ni0_A Bone marrow stromal ant 26.7 3.1E+02 0.01 23.6 10.5 20 534-553 37-56 (99)
235 3u06_A Protein claret segregat 25.8 1.6E+02 0.0055 31.6 8.3 53 511-577 6-58 (412)
236 3tt9_A Plakophilin-2; cell adh 25.3 1.5E+02 0.005 29.2 7.3 81 67-158 12-92 (233)
237 2nrj_A HBL B protein; enteroto 25.2 1.7E+02 0.0058 30.6 8.1 32 456-487 123-154 (346)
238 2xdj_A Uncharacterized protein 25.0 3E+02 0.01 22.9 10.3 17 510-526 36-52 (83)
239 2dgc_A Protein (GCN4); basic d 24.8 1.7E+02 0.0059 23.0 6.2 27 553-579 33-59 (63)
240 1a93_B MAX protein, coiled coi 24.6 1.2E+02 0.0041 21.3 4.5 25 462-486 6-30 (34)
241 3u06_A Protein claret segregat 24.4 1.5E+02 0.0051 31.9 7.7 34 507-540 9-42 (412)
242 3htk_A Structural maintenance 23.5 2.4E+02 0.0083 21.3 8.0 7 512-518 9-15 (60)
243 3nr7_A DNA-binding protein H-N 23.5 1.3E+02 0.0046 25.3 5.6 23 617-639 57-79 (86)
244 2b9c_A Striated-muscle alpha t 23.4 4.3E+02 0.015 24.2 14.0 38 526-563 84-121 (147)
245 1cii_A Colicin IA; bacteriocin 23.3 7.7E+02 0.026 27.0 14.8 50 528-577 362-411 (602)
246 1f5n_A Interferon-induced guan 23.3 8.2E+02 0.028 27.4 16.5 13 410-422 389-401 (592)
247 4fla_A Regulation of nuclear P 23.2 4.4E+02 0.015 24.3 15.4 41 506-549 66-106 (152)
248 2oqq_A Transcription factor HY 23.2 2.1E+02 0.0073 21.0 5.7 27 546-572 13-39 (42)
249 1f5n_A Interferon-induced guan 23.0 8.3E+02 0.028 27.3 14.6 21 416-436 410-431 (592)
250 3nmd_A CGMP dependent protein 22.9 3.1E+02 0.011 22.4 7.5 7 511-517 22-28 (72)
251 3etw_A Adhesin A; antiparallel 22.7 4.1E+02 0.014 23.7 13.6 39 540-579 72-110 (119)
252 4dzn_A Coiled-coil peptide CC- 22.7 1.6E+02 0.0056 19.8 4.6 14 528-541 15-28 (33)
253 1dh3_A Transcription factor CR 22.2 2.2E+02 0.0075 21.8 6.1 27 552-578 24-50 (55)
254 2iu1_A EIF5, eukaryotic transl 22.0 41 0.0014 33.0 2.4 7 413-419 12-18 (208)
255 3aco_A Pacsin2, protein kinase 21.8 6.4E+02 0.022 25.6 15.0 29 602-630 228-257 (350)
256 3efg_A Protein SLYX homolog; x 21.7 3E+02 0.01 22.6 7.2 25 555-579 33-57 (78)
257 3lay_A Zinc resistance-associa 21.3 4.9E+02 0.017 24.5 9.8 16 406-421 17-32 (175)
258 1gu4_A CAAT/enhancer binding p 21.1 1.7E+02 0.0058 24.2 5.7 15 563-577 56-70 (78)
259 3pst_A Protein DOA1; protein d 20.8 5E+02 0.017 28.0 10.8 148 18-224 239-401 (425)
260 1zxa_A CGMP-dependent protein 20.7 1.3E+02 0.0044 24.3 4.6 26 453-478 8-33 (67)
261 1a93_B MAX protein, coiled coi 20.6 1.5E+02 0.0051 20.9 4.3 8 528-535 20-27 (34)
262 1gk6_A Vimentin; intermediate 20.2 3E+02 0.01 21.2 6.6 25 605-629 28-52 (59)
263 3cl3_D NF-kappa-B essential mo 20.1 2.1E+02 0.0072 25.9 6.4 42 526-567 59-100 (130)
No 1
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=100.00 E-value=3e-86 Score=746.82 Aligned_cols=379 Identities=23% Similarity=0.331 Sum_probs=330.9
Q ss_pred CcchhhHhhhhcCCCCCCchhHHHHHHHHHHHhhHhccCCCCCCCCCccchhhhHHHHHhhcHHHHHHHHHhccCCCchH
Q 006200 2 GFDPLISILKLRGSAYSFTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVESQWAPVA 81 (657)
Q Consensus 2 ~~~~~~~~l~~~~~~~~W~~Qk~~N~~~~L~ivrllV~~g~~~~~~~~~~~~~nQ~~l~q~glL~~ll~La~~s~~~p~~ 81 (657)
++.+|+++|+...+.+.|++||++|++++|+|||+||+|+++. ++++.||++|+++|++++|++++| +..+|++
T Consensus 255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~-----~~t~~nQ~~~~~~g~l~~Ll~ll~-~~~~p~~ 328 (651)
T 3grl_A 255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPP-----GATSSCQKAMFQCGLLQQLCTILM-ATGVPAD 328 (651)
T ss_dssp CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCH-----HHHHHHHHHHHHTTHHHHHHHHHT-CSSCCHH
T ss_pred CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHHCCCHHHHHHHHc-cCCCCHH
Confidence 4678899999888889999999999999999999999998762 234589999999999999999999 5689999
Q ss_pred hHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCc-hhHHhHHHHHHHHhhcCChhhHHHHHhhh
Q 006200 82 VRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSS-MQEFLAADRIFNSFCEKNPDGQAMLTSTL 160 (657)
Q Consensus 82 Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~-~~~r~AA~~cf~ayl~~N~~~q~~L~~tl 160 (657)
||++||+|+|++||||+.||++|++++||+.| ++|+++.+|++|++... ...|+||+|||+|||++|+++|..+++|+
T Consensus 329 i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~-~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~l 407 (651)
T 3grl_A 329 ILTETINTVSEVIRGCQVNQDYFASVNAPSNP-PRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTL 407 (651)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHCEESSSS-CEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHhhccCCCCC-CcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhc
Confidence 99999999999999999999999999999966 48999999999986655 47799999999999999999999999999
Q ss_pred cCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHhccccccCCCCCCCCcchH
Q 006200 161 IPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLM 240 (657)
Q Consensus 161 ~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~dn~~~Ke~al~V~l~~~~~~~~~~e~ll 240 (657)
+|.+.+. .+.++|+|++||++||+ .|||++||||++|+|+|++|+++|++++||+++.. .+++|++++
T Consensus 408 lp~~~~~------~~~~~s~g~ll~~~l~s----~d~~~~wfAavil~hll~~n~~~K~~~l~v~l~~~--~ge~~vtli 475 (651)
T 3grl_A 408 LPSTIDA------TGNTVSAGQLLCGGLFS----TDSLSNWCAAVALAHALQENATQKEQLLRVQLATS--IGNPPVSLL 475 (651)
T ss_dssp SSCCCCC------TTSSSCHHHHHHHHHTS----SCHHHHHHHHHHHHHHHTTCHHHHHHHTTCBCCCC--TTCCCCBHH
T ss_pred CCccccc------CCCCCCcchhhhhhhcc----CchHHHHHHHHHHHHHHcCCHHHHHHHHhCccccc--CCCCcccHH
Confidence 9987542 23458999999999987 47899999999999999999999999999997743 467889999
Q ss_pred HHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhhcChHHHHHhhcCCChHHHHHHHhhCC-C-CchHhHHHHHHHh
Q 006200 241 HRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELVSNP-S-ATVCTRGLAAVLL 318 (657)
Q Consensus 241 ~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~e~p~AV~~FL~~~s~l~~L~~~i~~~-~-~~~lVqGL~A~LL 318 (657)
|+|+++|. ++.| .++++|||||||+||||||+||+|||++++|+++|+++++++ + .+++|||||||||
T Consensus 476 q~~~~~L~-----~~~~-----~ri~vgyL~LL~~WL~e~p~AV~dFL~~~s~l~~L~~~i~~~~~~~~~lvqGL~a~LL 545 (651)
T 3grl_A 476 QQCTNILS-----QGSK-----IQTRVGLLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAENLGEEEQLVQGLCALLL 545 (651)
T ss_dssp HHHHHHTT-----TTCC-----HHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-----cCCc-----hhHHHHHHHHHHHHHhCChHHHHHHHcCCchHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 99988764 2233 357789999999999999999999999999999999999764 3 5899999999999
Q ss_pred hhhHhhcCCCCCCCChhHHHHHHHhhcchhhHHHHHHHHhcccccccCCCccccccchhhhhhhhhhhhcccccccCCCC
Q 006200 319 GECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQKSFLFSSAKPTQALKPLTRSTAASMAEIEDIDDSDLSDKE 398 (657)
Q Consensus 319 G~Cv~Yn~ss~~~~ds~~l~~lI~~RiG~d~y~~kl~~lr~~~~f~~~~~~~~~~~l~r~~~~~~~~~~~~~~~d~~~~~ 398 (657)
||||+||..+.++.+|++||++|++|||+|+|++||++||+||+|+++. +.+++.
T Consensus 546 Gi~yef~~~~~~~~~R~~l~~ll~~riG~d~y~~kl~~lr~~~~f~~~~--~~~~~~----------------------- 600 (651)
T 3grl_A 546 GISIYFNDNSLETYMKEKLKQLIEKRIGKENFIEKLGFISKHELYSRAS--QKPQPN----------------------- 600 (651)
T ss_dssp HHHHHTCCSCCGGGCHHHHHHHHHHHTCHHHHHHHHHHHHHSTTHHHHH--HCSCCC-----------------------
T ss_pred HHHhhccCCCcCccCHHHHHHHHHHhcCHHHHHHHHHHHhcCHHHHHHH--hCcCcc-----------------------
Confidence 9999999876556899999999999999999999999999999999874 232221
Q ss_pred cCCCCcccccccHHHHHHHHHhHHHHHHhhhhhcCCCCCcc
Q 006200 399 NEDHPLLSSMFDKHFVDIIKSLESSIRENIVDVYSRPKSEV 439 (657)
Q Consensus 399 ~~~~~l~~v~FD~~Fv~f~K~n~~~I~~ai~~~~~dP~~e~ 439 (657)
..+.|+||||++||+|||+||+||+||| +++|+.+.
T Consensus 601 --~~~~~~v~fd~~F~~~fK~~~~ri~~al---~~~~~~~~ 636 (651)
T 3grl_A 601 --FPSPEYMIFDHEFTKLVKELEGVITKAI---YKSSEEDK 636 (651)
T ss_dssp --CSSGGGTTCCHHHHHHHHHHHHHHHHHH---HCCC----
T ss_pred --CCCCCceeecHHHHHHHHHHHHHHHHHh---cCCcccch
Confidence 0123699999999999999999999999 68888764
No 2
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.23 E-value=0.052 Score=52.28 Aligned_cols=209 Identities=16% Similarity=0.142 Sum_probs=144.5
Q ss_pred hhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchh
Q 006200 54 TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQ 133 (657)
Q Consensus 54 ~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~ 133 (657)
.+...+.+.|++..|+.+.- +. ...||..|+.+++.+..+++.++..+.+..+ .|.+ ..++...+..
T Consensus 35 ~~~~~~~~~g~i~~L~~ll~-~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~------i~~l----~~ll~~~~~~ 101 (252)
T 4hxt_A 35 SAIKAIVDAGGVEVLVKLLT-ST--DSEVQKEAARALANIASGPDEAIKAIVDAGG------VEVL----VKLLTSTDSE 101 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTT-CS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH------HHHH----HHHTTCSSHH
T ss_pred HHHHHHHHCCCHHHHHHHHh-CC--CHHHHHHHHHHHHHHHcCChHHHHHHHHCCC------HHHH----HHHHcCCCHH
Confidence 58889999999999999887 33 5899999999999999999999888865422 2333 3334566778
Q ss_pred HHhHHHHHHHHhhcCChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhcC
Q 006200 134 EFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMD 213 (657)
Q Consensus 134 ~r~AA~~cf~ayl~~N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~d 213 (657)
.+.+|+.++..+...+++.+..+... .....|+..|.+ .++.....|+.+|.++...
T Consensus 102 v~~~a~~~L~~l~~~~~~~~~~~~~~-------------------~~i~~L~~~l~~----~~~~~~~~a~~~L~~l~~~ 158 (252)
T 4hxt_A 102 VQKEAARALANIASGPDEAIKAIVDA-------------------GGVEVLVKLLTS----TDSEVQKEAARALANIASG 158 (252)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHT-------------------THHHHHHHHTTC----SCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHC-------------------CCHHHHHHHHcC----CCHHHHHHHHHHHHHHHcC
Confidence 88999999999998998888655431 122335554432 2355566688899999998
Q ss_pred CHHHHHHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhhcChHHHHHhhcCCCh
Q 006200 214 NLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPH 293 (657)
Q Consensus 214 n~~~Ke~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~e~p~AV~~FL~~~s~ 293 (657)
++..+..+.. . ..++.+..++. +.+ ..+|..-+..|..-..+++.....+...+ .
T Consensus 159 ~~~~~~~~~~---~----------~~i~~L~~ll~------~~~-----~~v~~~a~~~L~~l~~~~~~~~~~l~~~~-~ 213 (252)
T 4hxt_A 159 PDEAIKAIVD---A----------GGVEVLVKLLT------STD-----SEVQKEAARALANIASGPTSAIKAIVDAG-G 213 (252)
T ss_dssp CHHHHHHHHH---T----------THHHHHHHHTT------CSC-----HHHHHHHHHHHHHHTTSBHHHHHHHHHTT-H
T ss_pred CHHHHHHHHH---C----------cCHHHHHHHHC------CCC-----HHHHHHHHHHHHHHHcCCHHHHHHHHHCC-C
Confidence 8887664432 1 14555555543 111 23444456666666677888877777766 7
Q ss_pred HHHHHHHhhCCCCchHhHHHHHHHhhhhHhhc
Q 006200 294 LTYLLELVSNPSATVCTRGLAAVLLGECVIYN 325 (657)
Q Consensus 294 l~~L~~~i~~~~~~~lVqGL~A~LLG~Cv~Yn 325 (657)
++.|++.+.+. +.-|+--++..|+-...+.
T Consensus 214 i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 214 VEVLQKLLTST--DSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHHHGGGCS--CHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCC--cHHHHHHHHHHHHHHHcCC
Confidence 89999888643 4577888888887444433
No 3
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.23 E-value=0.026 Score=58.63 Aligned_cols=221 Identities=15% Similarity=0.118 Sum_probs=140.5
Q ss_pred HHHHHHHhhHhccCCCCCCCCCccchhhhHHHHHhhcHHHHHHH-HHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhh
Q 006200 27 LLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLM-LAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLA 105 (657)
Q Consensus 27 ~~~~L~ivrllV~~g~~~~~~~~~~~~~nQ~~l~q~glL~~ll~-La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa 105 (657)
-..+|+++.-|+.. ..|...|.+.|.+..|+. +.- ++ ...||..|..++|.+..+|+.+|..+.
T Consensus 57 k~~Al~~L~~lv~~------------~dna~~~~~~G~l~~Lv~~lL~-s~--~~~vr~~Aa~~Lg~ia~~n~~~~~~vv 121 (296)
T 1xqr_A 57 REGALELLADLCEN------------MDNAADFCQLSGMHLLVGRYLE-AG--AAGLRWRAAQLIGTCSQNVAAIQEQVL 121 (296)
T ss_dssp HHHHHHHHHHHHTS------------HHHHHHHHHTTHHHHHHHTTTT-CS--SHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC------------hhhHHHHHHcCCHHHHHHHHHc-CC--CHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 34455666666642 147888999999999988 654 43 679999999999999999999999877
Q ss_pred ccccCCCCccchHHHHHHHHHhccCchhHHhHHHHHHHHhhcCChhhH-HHHHhhhcCCCCCCCCCCCcccccCChhHHH
Q 006200 106 SKVLGEEPQVEAALNSILRIILRTSSMQEFLAADRIFNSFCEKNPDGQ-AMLTSTLIPQPQSMSHAPLEEDVNMSFGSML 184 (657)
Q Consensus 106 ~~~vp~~p~~~pal~~LL~~~L~~~~~~~r~AA~~cf~ayl~~N~~~q-~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~L 184 (657)
...+ .|.+..||.. ..+...+..|++++-+.+.+|+..+ .++.... ...|
T Consensus 122 ~~g~------l~~Ll~LL~~---~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~gg--------------------i~~L 172 (296)
T 1xqr_A 122 GLGA------LRKLLRLLDR---DACDTVRVKALFAISCLVREQEAGLLQFLRLDG--------------------FSVL 172 (296)
T ss_dssp HTTH------HHHHHHHHHH---CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH--------------------HHHH
T ss_pred HCCC------HHHHHHHHcc---CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCC--------------------HHHH
Confidence 5432 3444455432 3356778899999999999998877 4444222 2334
Q ss_pred hhhcccCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchh
Q 006200 185 IRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGY 264 (657)
Q Consensus 185 l~~L~s~d~~~dpy~~wfAa~iL~hll~dn~~~Ke~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~ 264 (657)
...|-+. |+...--|+.+|.++...+++.+..+..- -++..++.+|. +.|. .
T Consensus 173 ~~lL~~~----d~~v~~~A~~aLs~L~~~~~~~~~~vv~~-------------g~i~~Lv~LL~------~~d~-----~ 224 (296)
T 1xqr_A 173 MRAMQQQ----VQKLKVKSAFLLQNLLVGHPEHKGTLCSM-------------GMVQQLVALVR------TEHS-----P 224 (296)
T ss_dssp HHHHHSS----CHHHHHHHHHHHHHHHHHCGGGHHHHHHT-------------THHHHHHHHHT------SCCS-----T
T ss_pred HHHHcCC----CHHHHHHHHHHHHHHHhCChHHHHHHHHc-------------CCHHHHHHHHc------CCCh-----h
Confidence 4444332 33333448889999998888777655321 15556655553 1122 2
Q ss_pred HHHHHHHHHHHHhhcChHHHHHhhcCCChHHHHHHHh-h--C-CCCchHhHHHHHHHhh
Q 006200 265 IQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELV-S--N-PSATVCTRGLAAVLLG 319 (657)
Q Consensus 265 ~~~gyL~LL~~WL~e~p~AV~~FL~~~s~l~~L~~~i-~--~-~~~~~lVqGL~A~LLG 319 (657)
++---+..|..-+.+++.++..|=.....+..+++.. . + .++..-+.-.|.-++=
T Consensus 225 v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~ 283 (296)
T 1xqr_A 225 FHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQ 283 (296)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence 3334566666666778888887755433455555443 2 2 2333455556666665
No 4
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.74 E-value=0.19 Score=48.73 Aligned_cols=202 Identities=16% Similarity=0.102 Sum_probs=134.2
Q ss_pred hhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchh
Q 006200 54 TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQ 133 (657)
Q Consensus 54 ~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~ 133 (657)
.+...+.+.|++..|+.+.- +. ...|+..|+.+++.+..+++.++..+....+ .|.+. .+|...+..
T Consensus 45 ~~~~~~~~~g~i~~L~~lL~-~~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~------i~~L~----~lL~~~~~~ 111 (252)
T 4db8_A 45 EQIQAVIDAGALPALVQLLS-SP--NEQILQEALWALSNIASGGNEQIQAVIDAGA------LPALV----QLLSSPNEQ 111 (252)
T ss_dssp HHHHHHHHTTHHHHHHHGGG-CS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH------HHHHH----HGGGCSCHH
T ss_pred chHHHHHHcCcHHHHHHHHc-CC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCC------HHHHH----HHHcCCCHH
Confidence 56778999999999999887 33 4899999999999999999999888765421 23333 334556678
Q ss_pred HHhHHHHHHHHhhcCChhhH-HHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhc
Q 006200 134 EFLAADRIFNSFCEKNPDGQ-AMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILM 212 (657)
Q Consensus 134 ~r~AA~~cf~ayl~~N~~~q-~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~ 212 (657)
.+..|+.++..+..+++..+ .++.... ...|+.-|.+ .++.....|+.+|.++..
T Consensus 112 v~~~a~~~L~~l~~~~~~~~~~~~~~~~--------------------i~~L~~lL~~----~~~~v~~~a~~~L~~l~~ 167 (252)
T 4db8_A 112 ILQEALWALSNIASGGNEQIQAVIDAGA--------------------LPALVQLLSS----PNEQILQEALWALSNIAS 167 (252)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTH--------------------HHHHHHGGGC----SCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhcCCchHHHHHHHCCC--------------------HHHHHHHHhC----CCHHHHHHHHHHHHHHHc
Confidence 88899999998888776653 3333222 2335554422 144555668889999999
Q ss_pred CCHHHHHHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhhcChHHHHHhhcCCC
Q 006200 213 DNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRP 292 (657)
Q Consensus 213 dn~~~Ke~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~e~p~AV~~FL~~~s 292 (657)
.++..+..+..- .++..+..++. ..+ ..++..-+..|..-..+++.....++..+
T Consensus 168 ~~~~~~~~~~~~-------------~~i~~L~~ll~------~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~g- 222 (252)
T 4db8_A 168 GGNEQIQAVIDA-------------GALPALVQLLS------SPN-----EQILQEALWALSNIASGGNEQKQAVKEAG- 222 (252)
T ss_dssp SCHHHHHHHHHT-------------TCHHHHHHGGG------CSS-----HHHHHHHHHHHHHHTTSCHHHHHHHHHTT-
T ss_pred CChHHHHHHHHC-------------CCHHHHHHHHC------CCC-----HHHHHHHHHHHHHHhcCCHHHHHHHHHCC-
Confidence 888777654321 14455554442 111 23344445555555567888888887766
Q ss_pred hHHHHHHHhhCCCCchHhHHHHHHHhh
Q 006200 293 HLTYLLELVSNPSATVCTRGLAAVLLG 319 (657)
Q Consensus 293 ~l~~L~~~i~~~~~~~lVqGL~A~LLG 319 (657)
.++.|+..+.+ .+.-|+--++..|+
T Consensus 223 ~i~~L~~ll~~--~~~~v~~~A~~~L~ 247 (252)
T 4db8_A 223 ALEKLEQLQSH--ENEKIQKEAQEALE 247 (252)
T ss_dssp HHHHHHTTTTC--SSSHHHHTHHHHHH
T ss_pred cHHHHHHHhCC--CCHHHHHHHHHHHH
Confidence 68888877754 35567777777776
No 5
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=96.56 E-value=0.039 Score=57.26 Aligned_cols=132 Identities=14% Similarity=0.072 Sum_probs=93.6
Q ss_pred hhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchh
Q 006200 54 TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQ 133 (657)
Q Consensus 54 ~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~ 133 (657)
.+|..+.++|.+..|+.+.-.+ .+..||..|+.+++.++||++..+..|... + ..|.+..+ |...+..
T Consensus 115 ~~~~~vv~~g~l~~Ll~LL~~~--~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~-----g-gi~~L~~l----L~~~d~~ 182 (296)
T 1xqr_A 115 AIQEQVLGLGALRKLLRLLDRD--ACDTVRVKALFAISCLVREQEAGLLQFLRL-----D-GFSVLMRA----MQQQVQK 182 (296)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHC--SCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-----T-HHHHHHHH----HHSSCHH
T ss_pred HHHHHHHHCCCHHHHHHHHccC--CCHHHHHHHHHHHHHHHcCCcHHHHHHHHC-----C-CHHHHHHH----HcCCCHH
Confidence 6899999999999999987732 368899999999999999999999888763 1 13444444 3456777
Q ss_pred HHhHHHHHHHHhhcCChhhHHHHH-hhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhc
Q 006200 134 EFLAADRIFNSFCEKNPDGQAMLT-STLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILM 212 (657)
Q Consensus 134 ~r~AA~~cf~ayl~~N~~~q~~L~-~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~ 212 (657)
.+..|+.++..++.++++.+..++ ... ...|+.-|-+.+ +...--|+..|..++.
T Consensus 183 v~~~A~~aLs~L~~~~~~~~~~vv~~g~--------------------i~~Lv~LL~~~d----~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 183 LKVKSAFLLQNLLVGHPEHKGTLCSMGM--------------------VQQLVALVRTEH----SPFHEHVLGALCSLVT 238 (296)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHTTH--------------------HHHHHHHHTSCC----STHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHcCC--------------------HHHHHHHHcCCC----hhHHHHHHHHHHHHHh
Confidence 788889999988888887775444 222 222444342322 2334447778889998
Q ss_pred CCHHHHHHH
Q 006200 213 DNLQCKERV 221 (657)
Q Consensus 213 dn~~~Ke~a 221 (657)
++++.+...
T Consensus 239 ~~~~~~~~~ 247 (296)
T 1xqr_A 239 DFPQGVREC 247 (296)
T ss_dssp TCHHHHHHH
T ss_pred CChhHHHHH
Confidence 877765543
No 6
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.49 E-value=0.42 Score=46.47 Aligned_cols=24 Identities=8% Similarity=0.069 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 461 LKAFVEKQCSEIQKLLGRNATLAE 484 (657)
Q Consensus 461 lk~~i~~Q~~eiq~L~~~~~~L~~ 484 (657)
+...+..-..++..++.++..+..
T Consensus 18 ~~~~~~~l~~~l~~l~~~~~~~~~ 41 (284)
T 1c1g_A 18 ALDRADEAEADKKAAEDRSKQLED 41 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444443333333
No 7
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.40 E-value=0.55 Score=45.62 Aligned_cols=37 Identities=14% Similarity=0.215 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 513 LRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKME 549 (657)
Q Consensus 513 L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le 549 (657)
+..++......+..+..++..++.++..+......++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (284)
T 1c1g_A 81 AEADVASLNRRIQLFEEELDRAQERLATALQKLEEAE 117 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 8
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.04 E-value=1.2 Score=43.28 Aligned_cols=31 Identities=16% Similarity=0.024 Sum_probs=22.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 454 DKDYVKRLKAFVEKQCSEIQKLLGRNATLAE 484 (657)
Q Consensus 454 s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~ 484 (657)
..+-+.-||+...+-.+++.+++..+....+
T Consensus 8 ~~ee~~ywk~~~~~~~q~~~~le~El~EFqe 38 (189)
T 2v71_A 8 LKEETAYWKELSMKYKQSFQEARDELVEFQE 38 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888888777777666655
No 9
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=95.93 E-value=0.32 Score=45.87 Aligned_cols=132 Identities=17% Similarity=0.120 Sum_probs=96.2
Q ss_pred hhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchh
Q 006200 54 TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQ 133 (657)
Q Consensus 54 ~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~ 133 (657)
.++..+.+.|++..|+.+.- +. ...||..|+.+++.+..+++.+...+....+ .|.+.. +|...+..
T Consensus 45 ~~~~~i~~~g~i~~L~~lL~-~~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~------i~~L~~----lL~~~~~~ 111 (210)
T 4db6_A 45 EQIQAVIDAGALPALVQLLS-SP--NEQILQEALWALSNIASGGNEQIQAVIDAGA------LPALVQ----LLSSPNEQ 111 (210)
T ss_dssp HHHHHHHHTTHHHHHHHHTT-CS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC------HHHHHH----HTTCSCHH
T ss_pred HHHHHHHHcCCHHHHHHHHc-CC--CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCC------HHHHHH----HHcCCcHH
Confidence 67889999999999999876 33 6799999999999999999988887765422 333333 34566778
Q ss_pred HHhHHHHHHHHhhcCChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhcC
Q 006200 134 EFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMD 213 (657)
Q Consensus 134 ~r~AA~~cf~ayl~~N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~d 213 (657)
.+..|++++..+..++++.+..+... .....|+.-|-+ .++.....|+.+|.++...
T Consensus 112 v~~~a~~~L~~l~~~~~~~~~~~~~~-------------------~~i~~L~~ll~~----~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 112 ILQEALWALSNIASGGNEQIQAVIDA-------------------GALPALVQLLSS----PNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHT-------------------THHHHHHHHTTC----SCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHc-------------------CcHHHHHHHHcC----CCHHHHHHHHHHHHHHHcC
Confidence 88999999999998888776544321 122335554432 2455566688899999998
Q ss_pred CHHHHHHH
Q 006200 214 NLQCKERV 221 (657)
Q Consensus 214 n~~~Ke~a 221 (657)
++..+..+
T Consensus 169 ~~~~~~~~ 176 (210)
T 4db6_A 169 GNEQKQAV 176 (210)
T ss_dssp CHHHHHHH
T ss_pred CcHHHHHH
Confidence 88887644
No 10
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.86 E-value=0.5 Score=47.84 Aligned_cols=45 Identities=13% Similarity=0.078 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006200 509 QVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLK 553 (657)
Q Consensus 509 q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~ 553 (657)
++..++.++..++..++.++.++.+++.+++..+..+.+.+..+.
T Consensus 40 ~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~ 84 (256)
T 3na7_A 40 DKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS 84 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555555555554333
No 11
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.82 E-value=0.22 Score=60.43 Aligned_cols=11 Identities=18% Similarity=0.434 Sum_probs=5.8
Q ss_pred HHHHHHHHHHh
Q 006200 85 AALRCISDIIA 95 (657)
Q Consensus 85 ~AL~t~adlIr 95 (657)
+++..+|.++-
T Consensus 355 ~~l~~~a~LLg 365 (1080)
T 2dfs_A 355 DPLTIFCDLMG 365 (1080)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 45555555553
No 12
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=95.69 E-value=1.2 Score=42.52 Aligned_cols=194 Identities=16% Similarity=0.180 Sum_probs=129.2
Q ss_pred cHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchhHHhHHHHHH
Q 006200 63 KALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAADRIF 142 (657)
Q Consensus 63 glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~~r~AA~~cf 142 (657)
|.+..|+.+.- +. ...+|..|+.+++.+..+++.+...|.... ++..|+ .+|...+...+..|+.++
T Consensus 2 ~~i~~L~~~L~-~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g---------~i~~L~-~ll~~~~~~v~~~a~~~L 68 (252)
T 4hxt_A 2 NDVEKLVKLLT-ST--DSETQKEAARDLAEIASGPASAIKAIVDAG---------GVEVLV-KLLTSTDSEVQKEAARAL 68 (252)
T ss_dssp CHHHHHHHHTT-CS--CHHHHHHHHHHHHHHHTSCHHHHHHHHHTT---------HHHHHH-HHTTCSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHc-CC--CHHHHHHHHHHHHHHhcCCcHHHHHHHHCC---------CHHHHH-HHHhCCCHHHHHHHHHHH
Confidence 34556666665 33 488999999999999999987877776532 222333 334556678889999999
Q ss_pred HHhhcCChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHh
Q 006200 143 NSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVL 222 (657)
Q Consensus 143 ~ayl~~N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~dn~~~Ke~al 222 (657)
.....++++.+..+... .....|+.-|-+ .++.....|+.+|.++...++..+..+.
T Consensus 69 ~~l~~~~~~~~~~~~~~-------------------~~i~~l~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 125 (252)
T 4hxt_A 69 ANIASGPDEAIKAIVDA-------------------GGVEVLVKLLTS----TDSEVQKEAARALANIASGPDEAIKAIV 125 (252)
T ss_dssp HHHTTSCHHHHHHHHHT-------------------THHHHHHHHTTC----SSHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHC-------------------CCHHHHHHHHcC----CCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999988888655431 112334554422 2455566688899999988888887655
Q ss_pred ccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhhcChHHHHHhhcCCChHHHHHHHhh
Q 006200 223 RIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELVS 302 (657)
Q Consensus 223 ~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~e~p~AV~~FL~~~s~l~~L~~~i~ 302 (657)
.- ..+..+..++. ..+ ..++..-+..|.....+++.....+...+ .++.|+..+.
T Consensus 126 ~~-------------~~i~~L~~~l~------~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~i~~L~~ll~ 180 (252)
T 4hxt_A 126 DA-------------GGVEVLVKLLT------STD-----SEVQKEAARALANIASGPDEAIKAIVDAG-GVEVLVKLLT 180 (252)
T ss_dssp HT-------------THHHHHHHHTT------CSC-----HHHHHHHHHHHHHHTTSCHHHHHHHHHTT-HHHHHHHHTT
T ss_pred HC-------------CCHHHHHHHHc------CCC-----HHHHHHHHHHHHHHHcCCHHHHHHHHHCc-CHHHHHHHHC
Confidence 41 14455544442 111 23455566677777777777777777755 7999999986
Q ss_pred CCCCchHhHHHHHHHhh
Q 006200 303 NPSATVCTRGLAAVLLG 319 (657)
Q Consensus 303 ~~~~~~lVqGL~A~LLG 319 (657)
+ .+..|+.-++..|+
T Consensus 181 ~--~~~~v~~~a~~~L~ 195 (252)
T 4hxt_A 181 S--TDSEVQKEAARALA 195 (252)
T ss_dssp C--SCHHHHHHHHHHHH
T ss_pred C--CCHHHHHHHHHHHH
Confidence 4 34667777777776
No 13
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.64 E-value=0.044 Score=67.14 Aligned_cols=43 Identities=21% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHhHhHHHHHhhhhhhhHHHHHHHHHHcCchhhhhhcc
Q 006200 599 AQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVEKLLEG 641 (657)
Q Consensus 599 ~~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~lg~~v~~~~~~ 641 (657)
.++.++.+++++-.-+...+.++..+.+.+.++-..+.+.+..
T Consensus 1005 e~~~le~~i~~l~~~l~~~e~k~~~lek~~~~le~el~ele~~ 1047 (1184)
T 1i84_S 1005 ERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVR 1047 (1184)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666655555555555555443
No 14
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.62 E-value=0.54 Score=45.75 Aligned_cols=144 Identities=17% Similarity=0.152 Sum_probs=68.1
Q ss_pred HHHHHHHhHHHHHHhhhhhcCCCCCccccchhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 006200 413 FVDIIKSLESSIRENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGD 492 (657)
Q Consensus 413 Fv~f~K~n~~~I~~ai~~~~~dP~~e~~~~~~~~~~~~~~~s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~ 492 (657)
=+.+||..+...+..+..+ + .-.+..+. .|+++=.-|-..|..-.+.+.+|+.++..|..++.....
T Consensus 11 e~~ywk~~~~~~~q~~~~l------e--~El~EFqe----sSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~- 77 (189)
T 2v71_A 11 ETAYWKELSMKYKQSFQEA------R--DELVEFQE----GSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKE- 77 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHH------H--HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHH------H--HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4678888777776665311 0 00122222 356666666666666666666666666666665432220
Q ss_pred CCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHH
Q 006200 493 GASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKE 572 (657)
Q Consensus 493 ~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e 572 (657)
+ ..........++..|+.++..++..++.+...++.+|-...++....-...+.+..+..+||..-.++.=|+.|
T Consensus 78 K-----~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~E 152 (189)
T 2v71_A 78 K-----LEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESE 152 (189)
T ss_dssp H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000011223444444444444444444444444444444444444444444444445555544444444444
Q ss_pred HH
Q 006200 573 VK 574 (657)
Q Consensus 573 ~~ 574 (657)
+.
T Consensus 153 l~ 154 (189)
T 2v71_A 153 LD 154 (189)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 15
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.58 E-value=0.026 Score=69.18 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 459 KRLKAFVEKQCSEIQKLLGRNATLAEEL 486 (657)
Q Consensus 459 ~~lk~~i~~Q~~eiq~L~~~~~~L~~~l 486 (657)
..++..+......+++++.++..|.++.
T Consensus 867 ~el~~~L~~le~~l~ele~~l~~Le~e~ 894 (1184)
T 1i84_S 867 QRTKERQQKAEAELKELEQKHTQLCEEK 894 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555444
No 16
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.56 E-value=1.9 Score=43.51 Aligned_cols=45 Identities=11% Similarity=0.264 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHH
Q 006200 532 AQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKAL 576 (657)
Q Consensus 532 ~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~l 576 (657)
..+..|++.++...+.++..+..+..++..++.....+++++..+
T Consensus 93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~ 137 (256)
T 3na7_A 93 RSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLEL 137 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444433333
No 17
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=95.54 E-value=0.55 Score=51.74 Aligned_cols=253 Identities=14% Similarity=0.104 Sum_probs=143.5
Q ss_pred hHhhhhcCCCCCCchhHHHHHHHHHHHhhHhccCCCCCCCC----Cc----cchhhhHHHHHhhcHHHHHHHHHhccCCC
Q 006200 7 ISILKLRGSAYSFTQQKTINLLSALETINLLIVRGSEADPG----KD----AHKLTNKTVLVQKKALDNLLMLAVESQWA 78 (657)
Q Consensus 7 ~~~l~~~~~~~~W~~Qk~~N~~~~L~ivrllV~~g~~~~~~----~~----~~~~~nQ~~l~q~glL~~ll~La~~s~~~ 78 (657)
..+-|+-+.+..++-+.+.+..++=-+|++|-...++...- .- .+...+..++.+.|.+..|+.+.- |+
T Consensus 98 ~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~-s~-- 174 (529)
T 3tpo_A 98 QAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA-SP-- 174 (529)
T ss_dssp HHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT-CS--
T ss_pred HHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc-CC--
Confidence 33444444455555566666655556666664332211000 00 011245678999999999999766 43
Q ss_pred chHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHh-ccCchhHHhHHHHHHHHhhcCChhhH-HHH
Q 006200 79 PVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIIL-RTSSMQEFLAADRIFNSFCEKNPDGQ-AML 156 (657)
Q Consensus 79 p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L-~~~~~~~r~AA~~cf~ayl~~N~~~q-~~L 156 (657)
...|+..|+.+++.+...++.+++.+..--+ .|.+..+|..-- ..........+++++-.++.+..... ...
T Consensus 175 ~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~------i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~ 248 (529)
T 3tpo_A 175 HAHISEQAVWALGNIAGAGSAFRDLVIKHGA------IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDA 248 (529)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC------HHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHH
T ss_pred CHHHHHHHHHHHHHHhccCHHHHHHHHHcCC------cHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHH
Confidence 7899999999999999999999988765433 233333322100 00111222345556655554432211 111
Q ss_pred HhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHhccccccCCCCCCCC
Q 006200 157 TSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAA 236 (657)
Q Consensus 157 ~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~dn~~~Ke~al~V~l~~~~~~~~~~ 236 (657)
+..+ ...|..-|.+ .++.....|+..|.++...+...+..+.. .
T Consensus 249 ~~~~--------------------lp~L~~LL~~----~~~~v~~~a~~aL~~l~~~~~~~~~~v~~---~--------- 292 (529)
T 3tpo_A 249 VEQI--------------------LPTLVRLLHH----NDPEVLADSCWAISYLTDGPNERIEMVVK---K--------- 292 (529)
T ss_dssp HHHH--------------------HHHHHHHTTS----SCHHHHHHHHHHHHHHHSSCHHHHHHHHT---T---------
T ss_pred HhhH--------------------HHHHHHHhcC----CcHHHHHHHHHHHHHhhhhhhhhHHHHHh---c---------
Confidence 1111 1223333322 23444555888999999888877664422 1
Q ss_pred cchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhhcChHHHHHhhcCCChHHHHHHHhhCCCCchHhHHHHHH
Q 006200 237 EPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELVSNPSATVCTRGLAAV 316 (657)
Q Consensus 237 e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~e~p~AV~~FL~~~s~l~~L~~~i~~~~~~~lVqGL~A~ 316 (657)
.++..++.++. +.+ ..++..-++.|.-...+++.....++..+ .++.|+..+.++ +.-|+--++.
T Consensus 293 -g~i~~Lv~lL~------~~~-----~~v~~~a~~aL~nl~~~~~~~~~~i~~~g-~l~~L~~LL~~~--~~~i~~~a~~ 357 (529)
T 3tpo_A 293 -GVVPQLVKLLG------ATE-----LPIVTPALRAIGNIVTGTDEQTQKVIDAG-ALAVFPSLLTNP--KTNIQKEATW 357 (529)
T ss_dssp -TCHHHHHHHHT------CSC-----HHHHHHHHHHHHHHTTSCHHHHHHHHHTT-GGGGHHHHTTCS--SHHHHHHHHH
T ss_pred -cchHHHHHHhc------CCC-----hhHHHHHHHHHHHHHccchHHHHHHhhcc-cHHHHHHHHcCC--CHHHHHHHHH
Confidence 14555555543 111 12444456777777788888777777776 588888888644 4557777777
Q ss_pred Hhh
Q 006200 317 LLG 319 (657)
Q Consensus 317 LLG 319 (657)
.|+
T Consensus 358 aL~ 360 (529)
T 3tpo_A 358 TMS 360 (529)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
No 18
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=95.24 E-value=4.5 Score=44.25 Aligned_cols=231 Identities=14% Similarity=0.103 Sum_probs=135.0
Q ss_pred HhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchhHHhHHH
Q 006200 60 VQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAAD 139 (657)
Q Consensus 60 ~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~~r~AA~ 139 (657)
.-.|++..|.++.- + -...|+..|..+++.+..++......+..-. ..|.++.+ |...+...+..|+
T Consensus 229 ~~~~~lp~L~~LL~-~--~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g------~i~~Lv~l----L~~~~~~v~~~al 295 (510)
T 3ul1_B 229 AVEQILPTLVRLLH-H--NDPEVLADSCWAISYLTDGPNERIEMVVKKG------VVPQLVKL----LGATELPIVTPAL 295 (510)
T ss_dssp HHHHHHHHHHHHTT-C--SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTT------CHHHHHHH----HTCSCHHHHHHHH
T ss_pred HHHhHHHHHHHHHh-c--CCHHHHHHHHHHHHHHhhchhhhHHHHHhcc------cchhhhhh----hcCCChhhhhHHH
Confidence 33577888888766 3 3778999999999999998876665543321 13444433 4566677888999
Q ss_pred HHHHHhhcCChhhHHHHHh-hhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhcCCHHHH
Q 006200 140 RIFNSFCEKNPDGQAMLTS-TLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCK 218 (657)
Q Consensus 140 ~cf~ayl~~N~~~q~~L~~-tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~dn~~~K 218 (657)
.++...+.+++..+..+.. ..+| .|.. |+. ..++.....|+.+|.++...++..+
T Consensus 296 ~aL~nl~~~~~~~~~~i~~~g~l~--------------------~L~~-LL~---~~~~~v~~~A~~aL~nl~a~~~~~~ 351 (510)
T 3ul1_B 296 RAIGNIVTGTDEQTQKVIDAGALA--------------------VFPS-LLT---NPKTNIQKEATWTMSNITAGRQDQI 351 (510)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTGGG--------------------GCC--CTT---CSSHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHhhcCCHHHHHHHhhccchH--------------------HHHH-Hhc---CCCHHHHHHHHHHHHHHHcCcHHHH
Confidence 9999999999877754442 2211 1222 222 1233445568889999999998887
Q ss_pred HHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHh-hcChHHHHHhhcCCChHHHH
Q 006200 219 ERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWL-ADCPNAVHCFLDSRPHLTYL 297 (657)
Q Consensus 219 e~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL-~e~p~AV~~FL~~~s~l~~L 297 (657)
..+..- -++..+..++.-. + ..+|.--...|+-.. .+++.-+..+...+ .++.|
T Consensus 352 ~~v~~~-------------g~i~~Lv~lL~~~------~-----~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g-~i~~L 406 (510)
T 3ul1_B 352 QQVVNH-------------GLVPFLVGVLSKA------D-----FKTQKEAAWAITNYTSGGTVEQIVYLVHCG-IIEPL 406 (510)
T ss_dssp HHHHHT-------------THHHHHHHHHHSS------C-----HHHHHHHHHHHHHHHHHCCHHHHHHHHHTT-CHHHH
T ss_pred HHHHhc-------------CCHHHHHHHHcCC------C-----HHHHHHHHHHHHHHHccCCHHHHHHHHHCC-CHHHH
Confidence 755321 1566666665411 1 112222222233222 35666666666666 69999
Q ss_pred HHHhhCCCCchHhHHHHHHHhhhhHhhcCCCCCCCChhHHHHHHHhhcchhhHHHHHHHHhccc
Q 006200 298 LELVSNPSATVCTRGLAAVLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQKSF 361 (657)
Q Consensus 298 ~~~i~~~~~~~lVqGL~A~LLG~Cv~Yn~ss~~~~ds~~l~~lI~~RiG~d~y~~kl~~lr~~~ 361 (657)
++.+...+..++..+|.++- -||-..+.. .....+..+|..- | .+++|..|..|+
T Consensus 407 ~~LL~~~d~~i~~~~L~aL~-nil~~~~~~----~~~~~~~~~iee~-g---gl~~ie~Lq~~~ 461 (510)
T 3ul1_B 407 MNLLSAKDTKIIQVILDAIS-NIFQAAEKL----GETEKLSIMIEEC-G---GLDKIEALQRHE 461 (510)
T ss_dssp HHGGGCSCHHHHHHHHHHHH-HHHHHHHTT----TCHHHHHHHHHHT-T---HHHHHHHGGGCS
T ss_pred HHHhcCCCHHHHHHHHHHHH-HHHHHhHhc----cchHHHHHHHHHc-C---cHHHHHHHHcCC
Confidence 99987665544444444331 122222321 1233444444433 2 456888888775
No 19
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=95.22 E-value=1.7 Score=40.64 Aligned_cols=194 Identities=15% Similarity=0.077 Sum_probs=124.5
Q ss_pred cHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchhHHhHHHHHH
Q 006200 63 KALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAADRIF 142 (657)
Q Consensus 63 glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~~r~AA~~cf 142 (657)
|.-..|..|.- +. ...+|..|+.+++.+..+++.++..+....+ .|.+.. +|...+...+.+|+.++
T Consensus 12 ~~~~~l~~LL~-s~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~------i~~L~~----lL~~~~~~v~~~a~~~L 78 (210)
T 4db6_A 12 SELPQMVQQLN-SP--DQQELQSALRKLSQIASGGNEQIQAVIDAGA------LPALVQ----LLSSPNEQILQEALWAL 78 (210)
T ss_dssp -CHHHHHHHTT-CS--CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTH------HHHHHH----HTTCSCHHHHHHHHHHH
T ss_pred chhHHHHHHhc-CC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCC------HHHHHH----HHcCCCHHHHHHHHHHH
Confidence 34445666655 43 7899999999999999999988877765422 333333 34556778889999999
Q ss_pred HHhhcCChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHh
Q 006200 143 NSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVL 222 (657)
Q Consensus 143 ~ayl~~N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~dn~~~Ke~al 222 (657)
.....++++.+..+... + ....|+.-|-+. |+.....|+.+|.++..+++..+..+.
T Consensus 79 ~~l~~~~~~~~~~i~~~--------g-----------~i~~L~~lL~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~ 135 (210)
T 4db6_A 79 SNIASGGNEQIQAVIDA--------G-----------ALPALVQLLSSP----NEQILQEALWALSNIASGGNEQIQAVI 135 (210)
T ss_dssp HHHTTSCHHHHHHHHHT--------T-----------CHHHHHHHTTCS----CHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHC--------C-----------CHHHHHHHHcCC----cHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999998887555431 0 123345544222 455566688899999988888766543
Q ss_pred ccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhhcChHHHHHhhcCCChHHHHHHHhh
Q 006200 223 RIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLELVS 302 (657)
Q Consensus 223 ~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~e~p~AV~~FL~~~s~l~~L~~~i~ 302 (657)
. . .++..+..++. +.+ ..++..-+..|..-...++.....+...+ .++.|+..+.
T Consensus 136 ~---~----------~~i~~L~~ll~------~~~-----~~v~~~a~~aL~~l~~~~~~~~~~~~~~g-~i~~L~~ll~ 190 (210)
T 4db6_A 136 D---A----------GALPALVQLLS------SPN-----EQILQEALWALSNIASGGNEQKQAVKEAG-ALEKLEQLQS 190 (210)
T ss_dssp H---T----------THHHHHHHHTT------CSC-----HHHHHHHHHHHHHHHTSCHHHHHHHHHTT-HHHHHHHGGG
T ss_pred H---c----------CcHHHHHHHHc------CCC-----HHHHHHHHHHHHHHHcCCcHHHHHHHHCC-CHHHHHHHHh
Confidence 1 1 14555555543 111 12333344555555566677777777776 6899998886
Q ss_pred CCCCchHhHHHHHHHhh
Q 006200 303 NPSATVCTRGLAAVLLG 319 (657)
Q Consensus 303 ~~~~~~lVqGL~A~LLG 319 (657)
+ .+.-|+--++..|+
T Consensus 191 ~--~~~~v~~~a~~aL~ 205 (210)
T 4db6_A 191 H--ENEKIQKEAQEALE 205 (210)
T ss_dssp C--SCHHHHHHHHHHHH
T ss_pred C--CCHHHHHHHHHHHH
Confidence 4 35566766666665
No 20
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=94.98 E-value=2.6 Score=45.69 Aligned_cols=204 Identities=14% Similarity=0.110 Sum_probs=125.8
Q ss_pred hHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchhH
Q 006200 55 NKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQE 134 (657)
Q Consensus 55 nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~~ 134 (657)
+...+.+.|++..|+.+.-. . -...||..|+.+++.+..+++.+...+....+ .|.+.. +|...+...
T Consensus 109 ~~~~~~~~g~v~~Lv~lL~~-~-~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~------i~~L~~----lL~~~~~~v 176 (528)
T 4b8j_A 109 PIEEVIQSGVVPRFVQFLTR-E-DFPQLQFEAAWALTNIASGTSENTKVVIDHGA------VPIFVK----LLGSSSDDV 176 (528)
T ss_dssp CHHHHHHTTCHHHHHHHHTC-T-TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTH------HHHHHH----HTTCSCHHH
T ss_pred hHHHHHHCCCHHHHHHHhCC-C-CCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCc------HHHHHH----HhcCCCHHH
Confidence 45567889999999998763 2 23789999999999999999888776654311 233333 344567788
Q ss_pred HhHHHHHHHHhhcCChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhcCC
Q 006200 135 FLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDN 214 (657)
Q Consensus 135 r~AA~~cf~ayl~~N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~dn 214 (657)
+..|++++.....+++..+..+... .....|+..|.. + .++.....|+.+|.++....
T Consensus 177 ~~~a~~aL~~l~~~~~~~~~~i~~~-------------------g~l~~Ll~lL~~-~--~~~~v~~~a~~~L~~L~~~~ 234 (528)
T 4b8j_A 177 REQAVWALGNVAGDSPKCRDLVLAN-------------------GALLPLLAQLNE-H--TKLSMLRNATWTLSNFCRGK 234 (528)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHT-------------------TCHHHHHHTCCT-T--CCHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhCCChhhHHHHHHC-------------------CcHHHHHHHHhc-C--CCHHHHHHHHHHHHHHHcCC
Confidence 8899999999998888887655431 012335554422 1 24455556777888887664
Q ss_pred HHHHHHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhhcChHHHHHhhcCCChH
Q 006200 215 LQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHL 294 (657)
Q Consensus 215 ~~~Ke~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~e~p~AV~~FL~~~s~l 294 (657)
+..+.... ..+++.+..++. ..| ..++...+..|..-..+.+..+..++..+ .+
T Consensus 235 ~~~~~~~~--------------~~~l~~L~~lL~------~~~-----~~v~~~a~~aL~~l~~~~~~~~~~~~~~g-~v 288 (528)
T 4b8j_A 235 PQPSFEQT--------------RPALPALARLIH------SND-----EEVLTDACWALSYLSDGTNDKIQAVIEAG-VC 288 (528)
T ss_dssp SCCCHHHH--------------TTHHHHHHHHTT------CCC-----HHHHHHHHHHHHHHTSSCHHHHHHHHHTT-CH
T ss_pred CCCcHHHH--------------HHHHHHHHHHHC------CCC-----HHHHHHHHHHHHHHHcCCHHHHHHHHHcC-HH
Confidence 32221110 124444444431 112 12333344455544455666666777665 69
Q ss_pred HHHHHHhhCCCCchHhHHHHHHHhhh
Q 006200 295 TYLLELVSNPSATVCTRGLAAVLLGE 320 (657)
Q Consensus 295 ~~L~~~i~~~~~~~lVqGL~A~LLG~ 320 (657)
+.|+..+.+.+ .-|+--++..||-
T Consensus 289 ~~Lv~lL~~~~--~~v~~~a~~~L~n 312 (528)
T 4b8j_A 289 PRLVELLLHPS--PSVLIPALRTVGN 312 (528)
T ss_dssp HHHHHHTTCSC--HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCC--hhHHHHHHHHHHH
Confidence 99999986553 4566666667773
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=94.97 E-value=2.1 Score=46.72 Aligned_cols=202 Identities=15% Similarity=0.167 Sum_probs=130.8
Q ss_pred hhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchh
Q 006200 54 TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQ 133 (657)
Q Consensus 54 ~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~ 133 (657)
.+...+.+.|++..|+.+.- +. ...||..|+.+++.+..+++.+...+....+ .|.+..+ +...+..
T Consensus 164 ~~~~~~~~~g~i~~Lv~lL~-~~--~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~------l~~L~~l----l~~~~~~ 230 (530)
T 1wa5_B 164 AQTKVVVDADAVPLFIQLLY-TG--SVEVKEQAIWALGNVAGDSTDYRDYVLQCNA------MEPILGL----FNSNKPS 230 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHH-HC--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC------HHHHHHG----GGSCCHH
T ss_pred HHHHHHHHCCCHHHHHHHHc-CC--CHHHHHHHHHHHHHHhCCCccchHHHHHcCc------HHHHHHH----hccCCHH
Confidence 46677888999999999877 33 7899999999999999988887776654311 3333333 3345667
Q ss_pred HHhHHHHHHHHhhcCC-hhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhc
Q 006200 134 EFLAADRIFNSFCEKN-PDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILM 212 (657)
Q Consensus 134 ~r~AA~~cf~ayl~~N-~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~ 212 (657)
.+..|+.++..++.+. +.....+...+ ...|+.-|.+ .|+....-|+.+|.++..
T Consensus 231 v~~~a~~~L~~L~~~~~~~~~~~~~~~~--------------------l~~L~~lL~~----~d~~v~~~a~~~L~~L~~ 286 (530)
T 1wa5_B 231 LIRTATWTLSNLCRGKKPQPDWSVVSQA--------------------LPTLAKLIYS----MDTETLVDACWAISYLSD 286 (530)
T ss_dssp HHHHHHHHHHHHHCCSSSCCCHHHHGGG--------------------HHHHHHHTTC----CCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCCCCCcHHHHHhH--------------------HHHHHHHHcC----CCHHHHHHHHHHHHHHhC
Confidence 7888899998777654 33332222222 2334444422 234555567888999888
Q ss_pred CCHHHHHHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhhcChHHHHHhhcCCC
Q 006200 213 DNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRP 292 (657)
Q Consensus 213 dn~~~Ke~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~e~p~AV~~FL~~~s 292 (657)
.++..+..+.. . .++..+..++. ..+ ..++..-+..|..-..+++.....++..+
T Consensus 287 ~~~~~~~~~~~----~---------~~v~~Lv~lL~------~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~- 341 (530)
T 1wa5_B 287 GPQEAIQAVID----V---------RIPKRLVELLS------HES-----TLVQTPALRAVGNIVTGNDLQTQVVINAG- 341 (530)
T ss_dssp SCHHHHHHHHH----T---------TCHHHHHHGGG------CSC-----HHHHHHHHHHHHHHTTSCHHHHHHHHHTT-
T ss_pred CCHHHHHHHHh----c---------CcHHHHHHHHC------CCC-----hhhHHHHHHHHHHHHcCCHHHHHHHHHcc-
Confidence 87766554321 0 14555554442 111 23444456666666778888888888775
Q ss_pred hHHHHHHHhhCCCCchHhHHHHHHHhh
Q 006200 293 HLTYLLELVSNPSATVCTRGLAAVLLG 319 (657)
Q Consensus 293 ~l~~L~~~i~~~~~~~lVqGL~A~LLG 319 (657)
.++.|+..+.+. +.-|+--++..||
T Consensus 342 ~l~~L~~lL~~~--~~~vr~~A~~aL~ 366 (530)
T 1wa5_B 342 VLPALRLLLSSP--KENIKKEACWTIS 366 (530)
T ss_dssp HHHHHHHHTTCS--CHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCC--CHHHHHHHHHHHH
Confidence 788899888654 5677877888887
No 22
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=94.73 E-value=4.3 Score=43.96 Aligned_cols=205 Identities=19% Similarity=0.216 Sum_probs=131.7
Q ss_pred hhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchh
Q 006200 54 TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQ 133 (657)
Q Consensus 54 ~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~ 133 (657)
.+...+.+.|.+..|+.+.- +. ...||..|+.+++.+..+++.+...+....+ .| .|+..+....+..
T Consensus 151 ~~~~~~~~~g~i~~L~~lL~-~~--~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~------l~---~Ll~lL~~~~~~~ 218 (528)
T 4b8j_A 151 ENTKVVIDHGAVPIFVKLLG-SS--SDDVREQAVWALGNVAGDSPKCRDLVLANGA------LL---PLLAQLNEHTKLS 218 (528)
T ss_dssp HHHHHHHHTTHHHHHHHHTT-CS--CHHHHHHHHHHHHHHHHTCHHHHHHHHHTTC------HH---HHHHTCCTTCCHH
T ss_pred HHHHHHHhCCcHHHHHHHhc-CC--CHHHHHHHHHHHHHHhCCChhhHHHHHHCCc------HH---HHHHHHhcCCCHH
Confidence 67888999999999999877 33 6799999999999999888888777654321 22 3333333455677
Q ss_pred HHhHHHHHHHHhhcCChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhcC
Q 006200 134 EFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMD 213 (657)
Q Consensus 134 ~r~AA~~cf~ayl~~N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~d 213 (657)
.+..|+++|..++.+.+..+..+... ....|+..|.+ .|+.....|+.+|.++...
T Consensus 219 v~~~a~~~L~~L~~~~~~~~~~~~~~--------------------~l~~L~~lL~~----~~~~v~~~a~~aL~~l~~~ 274 (528)
T 4b8j_A 219 MLRNATWTLSNFCRGKPQPSFEQTRP--------------------ALPALARLIHS----NDEEVLTDACWALSYLSDG 274 (528)
T ss_dssp HHHHHHHHHHHHHCSSSCCCHHHHTT--------------------HHHHHHHHTTC----CCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHcCCCCCcHHHHHH--------------------HHHHHHHHHCC----CCHHHHHHHHHHHHHHHcC
Confidence 78888999988777654443333211 22334444422 2455566678889998887
Q ss_pred CHHHHHHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhhcChHHHHHhhcCCCh
Q 006200 214 NLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPH 293 (657)
Q Consensus 214 n~~~Ke~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~e~p~AV~~FL~~~s~ 293 (657)
++.....+..- .++..+..++. ..+ ..++..-+..|..-..+++.....++..+ .
T Consensus 275 ~~~~~~~~~~~-------------g~v~~Lv~lL~------~~~-----~~v~~~a~~~L~nl~~~~~~~~~~~~~~~-~ 329 (528)
T 4b8j_A 275 TNDKIQAVIEA-------------GVCPRLVELLL------HPS-----PSVLIPALRTVGNIVTGDDAQTQCIIDHQ-A 329 (528)
T ss_dssp CHHHHHHHHHT-------------TCHHHHHHHTT------CSC-----HHHHHHHHHHHHHHTTSCHHHHHHHHTTT-H
T ss_pred CHHHHHHHHHc-------------CHHHHHHHHHc------CCC-----hhHHHHHHHHHHHHHcCCHHHHHHHHHhh-h
Confidence 77655433211 14555555442 111 12344456666666667887777777655 6
Q ss_pred HHHHHHHhhCCCCchHhHHHHHHHhhh
Q 006200 294 LTYLLELVSNPSATVCTRGLAAVLLGE 320 (657)
Q Consensus 294 l~~L~~~i~~~~~~~lVqGL~A~LLG~ 320 (657)
++.|+..+.+.. +..|+--++..||-
T Consensus 330 l~~L~~lL~~~~-~~~v~~~A~~~L~n 355 (528)
T 4b8j_A 330 LPCLLSLLTQNL-KKSIKKEACWTISN 355 (528)
T ss_dssp HHHHHHHHHSCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC-cHHHHHHHHHHHHH
Confidence 899999887542 45677677777773
No 23
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.73 E-value=1.5 Score=41.75 Aligned_cols=113 Identities=19% Similarity=0.209 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHH-------HHHHH
Q 006200 456 DYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQR-------LEILK 528 (657)
Q Consensus 456 ~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~-------~e~l~ 528 (657)
+.+.++|-...+-...++.+...+..|...+...++ .....+.++..|+.+|++-+.. +..++
T Consensus 27 E~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~----------~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq 96 (168)
T 3o0z_A 27 DTAVRLRKSHTEMSKSISQLESLNRELQERNRILEN----------SKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQ 96 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555544432221 0123456667777777665533 22455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHH----HHHHHHHc
Q 006200 529 EEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLE----KEVKALKS 578 (657)
Q Consensus 529 ~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le----~e~~~lr~ 578 (657)
..+..++.|++.++....+.+.+-+.|++.++.||.+...++ =+++.++.
T Consensus 97 ~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~ 150 (168)
T 3o0z_A 97 ARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQ 150 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 567888999999999999999999999999999998888777 55677664
No 24
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=94.72 E-value=4.9 Score=44.07 Aligned_cols=231 Identities=15% Similarity=0.091 Sum_probs=134.4
Q ss_pred HhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchhHHhHHH
Q 006200 60 VQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAAD 139 (657)
Q Consensus 60 ~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~~r~AA~ 139 (657)
.-.|++..|.++.- + -...|+..|..+++.+..++..+...+..-. ..|.++.| |...+...+..|+
T Consensus 248 ~~~~~lp~L~~LL~-~--~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g------~i~~Lv~l----L~~~~~~v~~~a~ 314 (529)
T 3tpo_A 248 AVEQILPTLVRLLH-H--NDPEVLADSCWAISYLTDGPNERIEMVVKKG------VVPQLVKL----LGATELPIVTPAL 314 (529)
T ss_dssp HHHHHHHHHHHHTT-S--SCHHHHHHHHHHHHHHHSSCHHHHHHHHTTT------CHHHHHHH----HTCSCHHHHHHHH
T ss_pred HHhhHHHHHHHHhc-C--CcHHHHHHHHHHHHHhhhhhhhhHHHHHhcc------chHHHHHH----hcCCChhHHHHHH
Confidence 34577888888776 3 3789999999999999998877666543321 23444443 4566677788999
Q ss_pred HHHHHhhcCChhhHHHHHh-hhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhcCCHHHH
Q 006200 140 RIFNSFCEKNPDGQAMLTS-TLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCK 218 (657)
Q Consensus 140 ~cf~ayl~~N~~~q~~L~~-tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~dn~~~K 218 (657)
.++...+.+++..+..+.. .. ...|..-|-+ .++.....|+.+|.++..+++..+
T Consensus 315 ~aL~nl~~~~~~~~~~i~~~g~--------------------l~~L~~LL~~----~~~~i~~~a~~aL~nl~~~~~~~~ 370 (529)
T 3tpo_A 315 RAIGNIVTGTDEQTQKVIDAGA--------------------LAVFPSLLTN----PKTNIQKEATWTMSNITAGRQDQI 370 (529)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTG--------------------GGGHHHHTTC----SSHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHccchHHHHHHhhccc--------------------HHHHHHHHcC----CCHHHHHHHHHHHHHHhcccHHHH
Confidence 9999999999877754432 22 1223332222 133444568889999999998887
Q ss_pred HHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHh-hcChHHHHHhhcCCChHHHH
Q 006200 219 ERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWL-ADCPNAVHCFLDSRPHLTYL 297 (657)
Q Consensus 219 e~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL-~e~p~AV~~FL~~~s~l~~L 297 (657)
..+..- -++..+..++.-. + ..+|..-...|+-.. .+++.-+..+...| .++.|
T Consensus 371 ~~v~~~-------------g~i~~Lv~lL~~~------~-----~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g-~i~~L 425 (529)
T 3tpo_A 371 QQVVNH-------------GLVPFLVGVLSKA------D-----FKTQKAAAWAITNYTSGGTVEQIVYLVHCG-IIEPL 425 (529)
T ss_dssp HHHHHT-------------THHHHHHHHHHSS------C-----HHHHHHHHHHHHHHHHHSCHHHHHHHHHTT-CHHHH
T ss_pred HHHHhc-------------CcHHHHHHHhcCC------C-----HHHHHHHHHHHHHHHcCCCHHHHHHHHHCc-CHHHH
Confidence 755421 1556666655411 1 112221122222222 35666666666666 69999
Q ss_pred HHHhhCCCCchHhHHHHHHHhhhhHhhcCCCCCCCChhHHHHHHHhhcchhhHHHHHHHHhccc
Q 006200 298 LELVSNPSATVCTRGLAAVLLGECVIYNKSSDTGRDAFSIVDSISQKVGLTSYFLKFDEMQKSF 361 (657)
Q Consensus 298 ~~~i~~~~~~~lVqGL~A~LLG~Cv~Yn~ss~~~~ds~~l~~lI~~RiG~d~y~~kl~~lr~~~ 361 (657)
++.+...+..++..+|-|+- -||-..+.. .....+..+|..-=| +++|..|..|+
T Consensus 426 ~~LL~~~d~~i~~~~L~aL~-nil~~~~~~----~~~~~~~~~iee~gg----l~~ie~Lq~~~ 480 (529)
T 3tpo_A 426 MNLLSAKDTKIIQVILDAIS-NIFQAAEKL----GETEKLSIMIEECGG----LDKIEALQRHE 480 (529)
T ss_dssp HHGGGCSCHHHHHHHHHHHH-HHHHHHHTT----TCHHHHHHHHHHTTC----HHHHTGGGGCS
T ss_pred HHHhcCCCHHHHHHHHHHHH-HHHHHhHhc----cChHHHHHHHHHCCc----HHHHHHHHcCC
Confidence 99987655444433333321 111122221 123444555544334 45677777765
No 25
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=94.72 E-value=1.2 Score=48.69 Aligned_cols=218 Identities=14% Similarity=0.107 Sum_probs=132.7
Q ss_pred HHHHHhhHhccCCCCCCCCCccchhhhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccc
Q 006200 29 SALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKV 108 (657)
Q Consensus 29 ~~L~ivrllV~~g~~~~~~~~~~~~~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~ 108 (657)
.++..+|-+++.+.. .+-..+.+.|++..|+.+.- +. ....||..|+.+++.+..+++.+...+....
T Consensus 106 ~A~~~L~~ll~~~~~----------~~~~~~~~~g~i~~Lv~~L~-~~-~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g 173 (530)
T 1wa5_B 106 SATVKFRQILSREHR----------PPIDVVIQAGVVPRLVEFMR-EN-QPEMLQLEAAWALTNIASGTSAQTKVVVDAD 173 (530)
T ss_dssp HHHHHHHHHTCCSSS----------CSHHHHHHTTCHHHHHHTTS-TT-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCC----------ccHHHHHHCCCHHHHHHHhC-CC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHHCC
Confidence 455566656554321 23356788999999998765 21 2578999999999999999887776654321
Q ss_pred cCCCCccchHHHHHHHHHhccCchhHHhHHHHHHHHhhcCChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhc
Q 006200 109 LGEEPQVEAALNSILRIILRTSSMQEFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGL 188 (657)
Q Consensus 109 vp~~p~~~pal~~LL~~~L~~~~~~~r~AA~~cf~ayl~~N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L 188 (657)
..|.+..+|. ..+...|..|+.+|..+...++..+..+... .....|+.-|
T Consensus 174 ------~i~~Lv~lL~----~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~-------------------~~l~~L~~ll 224 (530)
T 1wa5_B 174 ------AVPLFIQLLY----TGSVEVKEQAIWALGNVAGDSTDYRDYVLQC-------------------NAMEPILGLF 224 (530)
T ss_dssp ------CHHHHHHHHH----HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-------------------TCHHHHHHGG
T ss_pred ------CHHHHHHHHc----CCCHHHHHHHHHHHHHHhCCCccchHHHHHc-------------------CcHHHHHHHh
Confidence 2455555544 4567888999999999999988887554421 0122344444
Q ss_pred ccCCCCcchhHHHHHHHHHHHHhcCC-HHHHHHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHH
Q 006200 189 TLGESDGDLEVCCRAASVLSHILMDN-LQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQL 267 (657)
Q Consensus 189 ~s~d~~~dpy~~wfAa~iL~hll~dn-~~~Ke~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~ 267 (657)
.+ .++.....|+.+|..+.... +..+... -..+++.+..++. ..| ..++.
T Consensus 225 ~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~--------------~~~~l~~L~~lL~------~~d-----~~v~~ 275 (530)
T 1wa5_B 225 NS----NKPSLIRTATWTLSNLCRGKKPQPDWSV--------------VSQALPTLAKLIY------SMD-----TETLV 275 (530)
T ss_dssp GS----CCHHHHHHHHHHHHHHHCCSSSCCCHHH--------------HGGGHHHHHHHTT------CCC-----HHHHH
T ss_pred cc----CCHHHHHHHHHHHHHHhCCCCCCCcHHH--------------HHhHHHHHHHHHc------CCC-----HHHHH
Confidence 22 23444444677787777653 2221100 0124444444432 112 23444
Q ss_pred HHHHHHHHHhhcChHHHHHhhcCCChHHHHHHHhhCCCCchHhHHHHHHHhh
Q 006200 268 IILKLLVTWLADCPNAVHCFLDSRPHLTYLLELVSNPSATVCTRGLAAVLLG 319 (657)
Q Consensus 268 gyL~LL~~WL~e~p~AV~~FL~~~s~l~~L~~~i~~~~~~~lVqGL~A~LLG 319 (657)
..+..|..-..+++..+..++..+ .++.|+..+.+. +.-|+--++..||
T Consensus 276 ~a~~~L~~L~~~~~~~~~~~~~~~-~v~~Lv~lL~~~--~~~v~~~a~~~L~ 324 (530)
T 1wa5_B 276 DACWAISYLSDGPQEAIQAVIDVR-IPKRLVELLSHE--STLVQTPALRAVG 324 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHTT-CHHHHHHGGGCS--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHhcC-cHHHHHHHHCCC--ChhhHHHHHHHHH
Confidence 445556655666777778887765 689999988644 4556666666666
No 26
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.61 E-value=0.72 Score=61.54 Aligned_cols=25 Identities=4% Similarity=0.205 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 455 KDYVKRLKAFVEKQCSEIQKLLGRN 479 (657)
Q Consensus 455 ~~~v~~lk~~i~~Q~~eiq~L~~~~ 479 (657)
-+++..|+.++.++.+++++.+.++
T Consensus 1898 Leli~~y~~ll~~K~~el~~~~~rl 1922 (3245)
T 3vkg_A 1898 LDFINQVVLLINEKRDQLEEEQLHL 1922 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777777777777766655543
No 27
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.46 E-value=1.6 Score=58.22 Aligned_cols=12 Identities=17% Similarity=0.410 Sum_probs=6.3
Q ss_pred HHHHHhhcChHH
Q 006200 272 LLVTWLADCPNA 283 (657)
Q Consensus 272 LL~~WL~e~p~A 283 (657)
|+-.|.|||...
T Consensus 1538 lvrLW~HE~~RV 1549 (3245)
T 3vkg_A 1538 LVRLWAHEALRL 1549 (3245)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344566666543
No 28
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=94.37 E-value=3.4 Score=47.27 Aligned_cols=185 Identities=12% Similarity=0.164 Sum_probs=111.4
Q ss_pred CcchhhHhhhhcCCCCCCchhHHHHHHHHHHHhhHhccCCCCCCCCCccchhhhHHHHHhhcHHHHHHHHHhc----cCC
Q 006200 2 GFDPLISILKLRGSAYSFTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVE----SQW 77 (657)
Q Consensus 2 ~~~~~~~~l~~~~~~~~W~~Qk~~N~~~~L~ivrllV~~g~~~~~~~~~~~~~nQ~~l~q~glL~~ll~La~~----s~~ 77 (657)
||++|+.|++-.|.. + --.-+.=.|.++.-|+.- |+ .||+.|.++|.+..|..+.-. ..|
T Consensus 209 aFe~Lf~Ii~~Eg~~----~-Ggivv~DCL~ll~nLLr~-N~----------sNQ~~FrEt~~i~~L~~LL~~~~~~~~W 272 (651)
T 3grl_A 209 AFERLLDIITEEGNS----D-GGIVVEDCLILLQNLLKN-NN----------SNQNFFKEGSYIQRMKPWFEVGDENSGW 272 (651)
T ss_dssp HHHHHHHHHHHHTGG----G-SHHHHHHHHHHHHHHHTT-CH----------HHHHHHHHTTCGGGGGGGGCCCSCSSCC
T ss_pred cHHHHHHHHHhcCCC----c-cchhHHHHHHHHHHHHhc-CH----------HHHHHHHHcCCHHHHHHHhCCCcccccc
Confidence 588999999888541 1 123333455566666642 32 799999999988887765320 135
Q ss_pred CchHhHH--HHHHHHHHHHhc------ChhhHHHhhccccCCCCccchHHHHHHHHHhccC-chhHHhHHHHHHHHhhcC
Q 006200 78 APVAVRC--AALRCISDIIAA------HPKNRDVLASKVLGEEPQVEAALNSILRIILRTS-SMQEFLAADRIFNSFCEK 148 (657)
Q Consensus 78 ~p~~Ir~--~AL~t~adlIrg------n~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~-~~~~r~AA~~cf~ayl~~ 148 (657)
++-.++- -+|.++.=++.+ ++.||..|.+-- .+..|++..+..+ +...++.|..++-....+
T Consensus 273 ~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g---------~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irg 343 (651)
T 3grl_A 273 SAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCG---------LLQQLCTILMATGVPADILTETINTVSEVIRG 343 (651)
T ss_dssp CHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTT---------HHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCC---------CHHHHHHHHccCCCCHHHHHHHHHHHHHHHhC
Confidence 4333333 166666666665 456788776543 2445566655433 346678899999999999
Q ss_pred ChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhH-HHHHHHHHHHHhcCCHHHHHHHhccc
Q 006200 149 NPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEV-CCRAASVLSHILMDNLQCKERVLRIE 225 (657)
Q Consensus 149 N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~-~wfAa~iL~hll~dn~~~Ke~al~V~ 225 (657)
|+..|..+...-.|+..+ .+..-.+|+..+ .. ..++. -+-|+..|--.+.+|+..+.....--
T Consensus 344 N~~~Q~~fa~~~vp~~~~----------~p~li~lL~~~~-~~---~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~l 407 (651)
T 3grl_A 344 CQVNQDYFASVNAPSNPP----------RPAIVVLLMSMV-NE---RQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTL 407 (651)
T ss_dssp CHHHHHHHHHCEESSSSC----------EEHHHHHHHHHT-CT---TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred CHHHHHHHhhccCCCCCC----------cChHHHHHHHHh-cc---cccHHHHHHHHHHHHHHHhCCHHHHHHHHHhc
Confidence 999999888877776321 122233333222 11 12222 23355566777788987776555443
No 29
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=94.15 E-value=5 Score=41.87 Aligned_cols=203 Identities=17% Similarity=0.154 Sum_probs=125.4
Q ss_pred hhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchh
Q 006200 54 TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQ 133 (657)
Q Consensus 54 ~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~ 133 (657)
.+...+.+.|++..|+.+.- +. ...||..|+.+++.+..+++.++..+....+ .|.+..+ +-...+..
T Consensus 98 ~~~~~~~~~~~i~~L~~lL~-~~--~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~------i~~L~~~---l~~~~~~~ 165 (450)
T 2jdq_A 98 LQTRIVIQAGAVPIFIELLS-SE--FEDVQEQAVWALGNIAGDSTMCRDYVLDCNI------LPPLLQL---FSKQNRLT 165 (450)
T ss_dssp HHHHHHHHTTHHHHHHHHTT-CS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC------HHHHHHH---TTSCCCHH
T ss_pred HHHHHHHhCCCHHHHHHHHc-CC--CHHHHHHHHHHHHHHccCCHHHHHHHHHCCC------HHHHHHH---hcCCCCHH
Confidence 45667788999999999876 43 6799999999999999988877776654221 2333333 22235677
Q ss_pred HHhHHHHHHHHhhcCC-hhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhc
Q 006200 134 EFLAADRIFNSFCEKN-PDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILM 212 (657)
Q Consensus 134 ~r~AA~~cf~ayl~~N-~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~ 212 (657)
.|..|+.++..++.++ +..+..+. ......|+..+-+ .|+....-|+.+|.++..
T Consensus 166 v~~~a~~~L~~l~~~~~~~~~~~~~--------------------~~~l~~L~~~l~~----~~~~v~~~a~~~L~~l~~ 221 (450)
T 2jdq_A 166 MTRNAVWALSNLCRGKSPPPEFAKV--------------------SPCLNVLSWLLFV----SDTDVLADACWALSYLSD 221 (450)
T ss_dssp HHHHHHHHHHHHHCCSSSCCCGGGT--------------------GGGHHHHHHHTTC----CCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhCCCCCCCCHHHH--------------------HHHHHHHHHHHcc----CCHHHHHHHHHHHHHHHC
Confidence 8888899998877654 22211110 1122334544422 244455557788888888
Q ss_pred CCHHHHHHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhhcChHHHHHhhcCCC
Q 006200 213 DNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRP 292 (657)
Q Consensus 213 dn~~~Ke~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~e~p~AV~~FL~~~s 292 (657)
..+..+..... ..++..+..++. ..+ ..+|..-+..|..-..+++.....++..+
T Consensus 222 ~~~~~~~~~~~-------------~~~i~~L~~ll~------~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~- 276 (450)
T 2jdq_A 222 GPNDKIQAVID-------------AGVCRRLVELLM------HND-----YKVVSPALRAVGNIVTGDDIQTQVILNCS- 276 (450)
T ss_dssp SSHHHHHHHHH-------------TTTHHHHHHHTT------CSC-----HHHHHHHHHHHHHHTTSCHHHHHHHHTTT-
T ss_pred CCcHHHHHHHH-------------cCcHHHHHHHHC------CCc-----hhHHHHHHHHHHHHhhCChHHHHHHHHCc-
Confidence 76655543321 014455554442 112 12344455666666667777777777665
Q ss_pred hHHHHHHHhhCCCCchHhHHHHHHHhh
Q 006200 293 HLTYLLELVSNPSATVCTRGLAAVLLG 319 (657)
Q Consensus 293 ~l~~L~~~i~~~~~~~lVqGL~A~LLG 319 (657)
.++.|+..+.++ +..|+--++..||
T Consensus 277 ~l~~L~~ll~~~--~~~vr~~a~~~L~ 301 (450)
T 2jdq_A 277 ALQSLLHLLSSP--KESIKKEACWTIS 301 (450)
T ss_dssp HHHHHHHHTTCS--SHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCC--CHHHHHHHHHHHH
Confidence 789999888654 4667777777777
No 30
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.98 E-value=0.45 Score=57.70 Aligned_cols=13 Identities=15% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q 006200 474 KLLGRNATLAEEL 486 (657)
Q Consensus 474 ~L~~~~~~L~~~l 486 (657)
+|+.++..|+.++
T Consensus 925 ~LE~kl~eLq~rL 937 (1080)
T 2dfs_A 925 GLENKIMQLQRKI 937 (1080)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.70 E-value=1.4 Score=49.23 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 541 YRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 541 ~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
+++...++|..++.-..++.++.+++..+.+|++++.+
T Consensus 542 ~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 542 LEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444445555555555555544
No 32
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=93.51 E-value=2 Score=47.06 Aligned_cols=202 Identities=14% Similarity=0.159 Sum_probs=121.6
Q ss_pred hhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCch-
Q 006200 54 TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSM- 132 (657)
Q Consensus 54 ~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~- 132 (657)
.+.+++.+.|.+..|+++.- ++ ...||..|+.+++.+...++.+++.+.+-.+ .|.+..+|. ..+.
T Consensus 134 e~~~~vv~~GaIp~Lv~lL~-s~--~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~------i~~Ll~lL~----~~~~~ 200 (510)
T 3ul1_B 134 EQTKAVVDGGAIPAFISLLA-SP--HAHISEQAVWALGNIAGDGSAFRDLVIKHGA------IDPLLALLA----VPDLS 200 (510)
T ss_dssp HHHHHHHHTTHHHHHHHHTT-CS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC------HHHHHHHTC----SSCGG
T ss_pred HHHHHHHHCCCHHHHHHHHc-CC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHcCC------hHHHHHHHH----hccch
Confidence 57788999999999999876 43 7899999999999999989999988766533 233333332 2221
Q ss_pred ----hHHhHHHHHHHHhhcCChhhH-HHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHH
Q 006200 133 ----QEFLAADRIFNSFCEKNPDGQ-AMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVL 207 (657)
Q Consensus 133 ----~~r~AA~~cf~ayl~~N~~~q-~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL 207 (657)
.....+++++...+.+..... ...+..+ ...|..-|.+ .++.....|+.+|
T Consensus 201 ~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~--------------------lp~L~~LL~~----~~~~v~~~A~~aL 256 (510)
T 3ul1_B 201 TLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQI--------------------LPTLVRLLHH----NDPEVLADSCWAI 256 (510)
T ss_dssp GSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHH--------------------HHHHHHHTTC----SCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhhcccchhHHHHHHhH--------------------HHHHHHHHhc----CCHHHHHHHHHHH
Confidence 122345556555544332111 1111111 1223333322 2445566688899
Q ss_pred HHHhcCCHHHHHHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhhcChHHHHHh
Q 006200 208 SHILMDNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCF 287 (657)
Q Consensus 208 ~hll~dn~~~Ke~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~e~p~AV~~F 287 (657)
.++...+...+..+..- -++..++.++. +.+ ..++..-++.|.--..+++.....+
T Consensus 257 ~~L~~~~~~~~~~i~~~-------------g~i~~Lv~lL~------~~~-----~~v~~~al~aL~nl~~~~~~~~~~i 312 (510)
T 3ul1_B 257 SYLTDGPNERIEMVVKK-------------GVVPQLVKLLG------ATE-----LPIVTPALRAIGNIVTGTDEQTQKV 312 (510)
T ss_dssp HHHTSSCHHHHHHHHTT-------------TCHHHHHHHHT------CSC-----HHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHhhchhhhHHHHHhc-------------ccchhhhhhhc------CCC-----hhhhhHHHHHHHHhhcCCHHHHHHH
Confidence 99998887766643221 14555555543 111 1234445666666667777777777
Q ss_pred hcCCChHHHHHHHhhCCCCchHhHHHHHHHhh
Q 006200 288 LDSRPHLTYLLELVSNPSATVCTRGLAAVLLG 319 (657)
Q Consensus 288 L~~~s~l~~L~~~i~~~~~~~lVqGL~A~LLG 319 (657)
+..+ .++.|+..+.+ .+.-|+--+|..|+
T Consensus 313 ~~~g-~l~~L~~LL~~--~~~~v~~~A~~aL~ 341 (510)
T 3ul1_B 313 IDAG-ALAVFPSLLTN--PKTNIQKEATWTMS 341 (510)
T ss_dssp HHTT-GGGGCC-CTTC--SSHHHHHHHHHHHH
T ss_pred hhcc-chHHHHHHhcC--CCHHHHHHHHHHHH
Confidence 7766 47777766653 34567777777777
No 33
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=93.50 E-value=2.9 Score=40.21 Aligned_cols=133 Identities=17% Similarity=0.109 Sum_probs=93.1
Q ss_pred hhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchh
Q 006200 54 TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQ 133 (657)
Q Consensus 54 ~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~ 133 (657)
.++..+.+.|.+..|+.+.- +. ...||..|+.+++.+..++...+..+....+ .|.+. .+|...+..
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~-~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~------i~~L~----~lL~~~~~~ 153 (252)
T 4db8_A 87 EQIQAVIDAGALPALVQLLS-SP--NEQILQEALWALSNIASGGNEQIQAVIDAGA------LPALV----QLLSSPNEQ 153 (252)
T ss_dssp HHHHHHHHTTHHHHHHHGGG-CS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH------HHHHH----HGGGCSCHH
T ss_pred HHHHHHHHcCCHHHHHHHHc-CC--CHHHHHHHHHHHHHhhcCCchHHHHHHHCCC------HHHHH----HHHhCCCHH
Confidence 67888999999999999877 33 5799999999999998887766455443311 23332 234566778
Q ss_pred HHhHHHHHHHHhhcCChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhcC
Q 006200 134 EFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMD 213 (657)
Q Consensus 134 ~r~AA~~cf~ayl~~N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~d 213 (657)
.+..|+.++.....++++.+..+... .....|+..|.+. ++.....|+.+|.++...
T Consensus 154 v~~~a~~~L~~l~~~~~~~~~~~~~~-------------------~~i~~L~~ll~~~----~~~v~~~a~~~L~~l~~~ 210 (252)
T 4db8_A 154 ILQEALWALSNIASGGNEQIQAVIDA-------------------GALPALVQLLSSP----NEQILQEALWALSNIASG 210 (252)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHT-------------------TCHHHHHHGGGCS----SHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHC-------------------CCHHHHHHHHCCC----CHHHHHHHHHHHHHHhcC
Confidence 88999999999998887776544421 1123455555332 455556688899999988
Q ss_pred CHHHHHHHh
Q 006200 214 NLQCKERVL 222 (657)
Q Consensus 214 n~~~Ke~al 222 (657)
++..+..+.
T Consensus 211 ~~~~~~~~~ 219 (252)
T 4db8_A 211 GNEQKQAVK 219 (252)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 888777554
No 34
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=93.35 E-value=2.2 Score=40.66 Aligned_cols=48 Identities=25% Similarity=0.245 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 530 EKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 530 e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
.+..++.+...++..-..=..+....+..+..|+..+..|..|++.++
T Consensus 63 ~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k 110 (168)
T 3o0z_A 63 SKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLK 110 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333344444444555555555555554
No 35
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=92.77 E-value=1.9 Score=36.38 Aligned_cols=63 Identities=19% Similarity=0.268 Sum_probs=42.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 454 DKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQ 533 (657)
Q Consensus 454 s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~ 533 (657)
|.++.+.|-+.|..--..|+-|+-++..|+++ ..+|..+.++++...+.+..++.+
T Consensus 4 S~ElleqLE~KIq~avdtI~lLqmEieELKek------------------------N~~L~~e~~e~~~~~~~L~~en~q 59 (81)
T 2jee_A 4 SLEVFEKLEAKVQQAIDTITLLQMEIEELKEK------------------------NNSLSQEVQNAQHQREELERENNH 59 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHhhhHHHHHHHHH
Confidence 56788888888888888887777777777773 244555555555555555656655
Q ss_pred HHHHHHH
Q 006200 534 IESDSSM 540 (657)
Q Consensus 534 ~eae~~~ 540 (657)
++.|...
T Consensus 60 Lk~E~~~ 66 (81)
T 2jee_A 60 LKEQQNG 66 (81)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 36
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=92.66 E-value=2.6 Score=39.00 Aligned_cols=20 Identities=15% Similarity=0.655 Sum_probs=13.0
Q ss_pred CcHHHHHHHHHHHHHHHHHH
Q 006200 453 SDKDYVKRLKAFVEKQCSEI 472 (657)
Q Consensus 453 ~s~~~v~~lk~~i~~Q~~ei 472 (657)
.+.+++..+-..|.++-.+|
T Consensus 25 e~ee~L~~vA~~vd~km~ei 44 (138)
T 3hnw_A 25 ESEEYLQRVASYINNKITEF 44 (138)
T ss_dssp SCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 35677776666666666665
No 37
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=92.16 E-value=4 Score=35.60 Aligned_cols=67 Identities=15% Similarity=0.215 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 511 ETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 511 e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
+.++.++..++...+...+....++.++........+.+.++.+|+.++..+|.++-+++..+..++
T Consensus 5 daIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~ 71 (101)
T 3u1c_A 5 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSE 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554444555566666666666677777777777777777777776666666554
No 38
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=91.34 E-value=15 Score=38.09 Aligned_cols=206 Identities=14% Similarity=0.149 Sum_probs=129.5
Q ss_pred hhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcC-hhhHHHhhccccCCCCccchHHHHHHHHHhccCch
Q 006200 54 TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAH-PKNRDVLASKVLGEEPQVEAALNSILRIILRTSSM 132 (657)
Q Consensus 54 ~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn-~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~ 132 (657)
.++..+.+.|++..|+.+.-. .....||..|+.+++.+.+++ +.....+ + ..++..|+.. +...+.
T Consensus 140 ~~~~~~~~~~~i~~L~~~l~~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~----~------~~~l~~L~~~-l~~~~~ 206 (450)
T 2jdq_A 140 MCRDYVLDCNILPPLLQLFSK--QNRLTMTRNAVWALSNLCRGKSPPPEFAK----V------SPCLNVLSWL-LFVSDT 206 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHTTS--CCCHHHHHHHHHHHHHHHCCSSSCCCGGG----T------GGGHHHHHHH-TTCCCH
T ss_pred HHHHHHHHCCCHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCCCCCCCHHH----H------HHHHHHHHHH-HccCCH
Confidence 356677788999999888662 247899999999999999876 3322111 1 1233333333 345667
Q ss_pred hHHhHHHHHHHHhhcCChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhc
Q 006200 133 QEFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILM 212 (657)
Q Consensus 133 ~~r~AA~~cf~ayl~~N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~ 212 (657)
..+..|+.++..+....++.+..+... .....|+..|.+ .++.....|+.+|..+..
T Consensus 207 ~v~~~a~~~L~~l~~~~~~~~~~~~~~-------------------~~i~~L~~ll~~----~~~~v~~~a~~~L~~l~~ 263 (450)
T 2jdq_A 207 DVLADACWALSYLSDGPNDKIQAVIDA-------------------GVCRRLVELLMH----NDYKVVSPALRAVGNIVT 263 (450)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHT-------------------TTHHHHHHHTTC----SCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHc-------------------CcHHHHHHHHCC----CchhHHHHHHHHHHHHhh
Confidence 788899999998887766655433311 012234444422 244555667788888888
Q ss_pred CCHHHHHHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhhcChHHHHHhhcCCC
Q 006200 213 DNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRP 292 (657)
Q Consensus 213 dn~~~Ke~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~e~p~AV~~FL~~~s 292 (657)
.++..+..+..- .++..+..++. ..+ ..+|..-++.|..-..+++..+..++..+
T Consensus 264 ~~~~~~~~~~~~-------------~~l~~L~~ll~------~~~-----~~vr~~a~~~L~~l~~~~~~~~~~~~~~~- 318 (450)
T 2jdq_A 264 GDDIQTQVILNC-------------SALQSLLHLLS------SPK-----ESIKKEACWTISNITAGNRAQIQTVIDAN- 318 (450)
T ss_dssp SCHHHHHHHHTT-------------THHHHHHHHTT------CSS-----HHHHHHHHHHHHHHTTSCHHHHHHHHHTT-
T ss_pred CChHHHHHHHHC-------------ccHHHHHHHHc------CCC-----HHHHHHHHHHHHHHHcCCHHHHHHHHHCC-
Confidence 877665543211 15555555543 111 23444456666666667888888888765
Q ss_pred hHHHHHHHhhCCCCchHhHHHHHHHhhhhH
Q 006200 293 HLTYLLELVSNPSATVCTRGLAAVLLGECV 322 (657)
Q Consensus 293 ~l~~L~~~i~~~~~~~lVqGL~A~LLG~Cv 322 (657)
-++.|+..+.+. +.-|+.-++..||-+.
T Consensus 319 ~l~~L~~~l~~~--~~~v~~~a~~~L~~l~ 346 (450)
T 2jdq_A 319 IFPALISILQTA--EFRTRKEAAWAITNAT 346 (450)
T ss_dssp HHHHHHHHHHHS--CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcC--CHHHHHHHHHHHHHHH
Confidence 688899888643 5678888888887433
No 39
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=91.32 E-value=11 Score=39.56 Aligned_cols=215 Identities=13% Similarity=0.061 Sum_probs=126.3
Q ss_pred hhHHHHHhhcHHHHHHHHHhcc--------CCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHH
Q 006200 54 TNKTVLVQKKALDNLLMLAVES--------QWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRI 125 (657)
Q Consensus 54 ~nQ~~l~q~glL~~ll~La~~s--------~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~ 125 (657)
.|+..|.+.|.+..|+.+.... ......++..|..++..+-+++..+...+... ....|.++.||
T Consensus 64 e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~-----~GaIp~LV~LL-- 136 (354)
T 3nmw_A 64 EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM-----KGCMRALVAQL-- 136 (354)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC-----HHHHHHHHHGG--
T ss_pred HHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc-----CCcHHHHHHHH--
Confidence 7999999999999999886310 11236789999999999999998777665321 11134444443
Q ss_pred HhccCchhHHhHHHHHHHHhhcC-ChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHH
Q 006200 126 ILRTSSMQEFLAADRIFNSFCEK-NPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAA 204 (657)
Q Consensus 126 ~L~~~~~~~r~AA~~cf~ayl~~-N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa 204 (657)
...+...+..|+.++...-++ |++.+..+... + ....|..-|.... ++....-|+
T Consensus 137 --~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~--------G-----------~Ip~Lv~lL~~~~---~~~~~~~A~ 192 (354)
T 3nmw_A 137 --KSESEDLQQVIASVLRNLSWRADVNSKKTLREV--------G-----------SVKALMECALEVK---KESTLKSVL 192 (354)
T ss_dssp --GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHT--------T-----------HHHHHHHHHHHCC---CHHHHHHHH
T ss_pred --CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHC--------C-----------CHHHHHHHHhcCC---CHHHHHHHH
Confidence 456667777788888776664 67777655521 0 1122343332211 233344466
Q ss_pred HHHHHHhcCCHHHHHHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCC-CCcchhHHHHHHHHHHHHhhcChHH
Q 006200 205 SVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDG-TGKAGYIQLIILKLLVTWLADCPNA 283 (657)
Q Consensus 205 ~iL~hll~dn~~~Ke~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~-ri~~~~~~~gyL~LL~~WL~e~p~A 283 (657)
-+|..|-..++..|...... .+ .+..++.+|. ...+. .+.+-..-.+.|+-|+.-+.+++..
T Consensus 193 ~aL~nLs~~~~~nk~~i~~~--~G----------ai~~Lv~lL~-----~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 255 (354)
T 3nmw_A 193 SALWNLSAHCTENKADICAV--DG----------ALAFLVGTLT-----YRSQTNTLAIIESGGGILRNVSSLIATNEDH 255 (354)
T ss_dssp HHHHHHHTTCHHHHHHHHHS--TT----------HHHHHHHHTT-----CCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHccChhhhHHHHHh--cC----------cHHHHHHHhc-----cCCCcccHHHHHHHHHHHHHHHhhccCCHHH
Confidence 67777777677777544321 11 3444444442 11110 0111111224566666555688888
Q ss_pred HHHhhcCCChHHHHHHHhhCCCCchHhHHHHHHHhh
Q 006200 284 VHCFLDSRPHLTYLLELVSNPSATVCTRGLAAVLLG 319 (657)
Q Consensus 284 V~~FL~~~s~l~~L~~~i~~~~~~~lVqGL~A~LLG 319 (657)
...+...+ -++.|++.+.+.+ .-++--++..|+
T Consensus 256 ~~~i~~~g-~i~~Lv~lL~~~~--~~v~~~A~~aL~ 288 (354)
T 3nmw_A 256 RQILRENN-CLQTLLQHLKSHS--LTIVSNACGTLW 288 (354)
T ss_dssp HHHHHTTT-HHHHHHHHTTCSC--HHHHHHHHHHHH
T ss_pred HHHHHHcC-CHHHHHHHHcCCC--hHHHHHHHHHHH
Confidence 87777766 5999999996543 335555555555
No 40
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.89 E-value=1.5 Score=41.26 Aligned_cols=13 Identities=15% Similarity=0.118 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 006200 508 VQVETLRKDLHEA 520 (657)
Q Consensus 508 ~q~e~L~~~L~~~ 520 (657)
.++..+++.|+..
T Consensus 20 D~L~~~R~el~~~ 32 (154)
T 2ocy_A 20 EQLNKSLKTIASQ 32 (154)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444433
No 41
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=89.77 E-value=5.2 Score=35.87 Aligned_cols=30 Identities=13% Similarity=0.188 Sum_probs=21.4
Q ss_pred HHHHHHHhHhHHHHHhhhhhhhHHHHHHHH
Q 006200 599 AQKESEAELNDLLVCLGQEQSKVEKLSARL 628 (657)
Q Consensus 599 ~~~~~~~e~~dLl~ll~d~~~K~~~~k~~L 628 (657)
....+++++|+..+.-.|++.|+..++.-|
T Consensus 70 di~~lrK~lD~~~l~r~dLE~~iesL~eEl 99 (119)
T 3ol1_A 70 TLQSFRQDVDNASLARLDLERKVESLQEEI 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777778887777776643
No 42
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=89.67 E-value=3.4 Score=37.36 Aligned_cols=64 Identities=11% Similarity=0.129 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 457 YVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIES 536 (657)
Q Consensus 457 ~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~ea 536 (657)
+|++|+..|.....+++.++.+-...-. ..+.++.+|+.+|++.++.......++..++.
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~--------------------ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~ 75 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVL--------------------QLKGHVSELEADLAEQQHLRQQAADDCEFLRA 75 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6766766666655555544333111111 22445566666666655544333444444444
Q ss_pred HHHH
Q 006200 537 DSSM 540 (657)
Q Consensus 537 e~~~ 540 (657)
+++.
T Consensus 76 e~~~ 79 (120)
T 3i00_A 76 ELDE 79 (120)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 43
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.99 E-value=7.1 Score=33.94 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 509 QVETLRKDLHEASQRLEILKEEKAQIESDSSMYRN 543 (657)
Q Consensus 509 q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~ 543 (657)
++..|..+|.+.+......+.++.+++.|++++..
T Consensus 27 e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 27 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666555556666666666666543
No 44
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=88.92 E-value=21 Score=39.05 Aligned_cols=216 Identities=13% Similarity=0.057 Sum_probs=125.7
Q ss_pred hhhHHHHHhhcHHHHHHHHHhc--------cCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHH
Q 006200 53 LTNKTVLVQKKALDNLLMLAVE--------SQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILR 124 (657)
Q Consensus 53 ~~nQ~~l~q~glL~~ll~La~~--------s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~ 124 (657)
..|...|.+.|.+..|+.+... .......++..|..++..+-+++..+...+... ....|.++.|
T Consensus 179 ~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~-----~GaIp~LV~L-- 251 (458)
T 3nmz_A 179 EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM-----KGCMRALVAQ-- 251 (458)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHC-----HHHHHHHHHG--
T ss_pred HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHc-----CCcHHHHHHH--
Confidence 4689999999999999998631 011245789999999999999998777666321 1113444444
Q ss_pred HHhccCchhHHhHHHHHHHHhhcC-ChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHH
Q 006200 125 IILRTSSMQEFLAADRIFNSFCEK-NPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRA 203 (657)
Q Consensus 125 ~~L~~~~~~~r~AA~~cf~ayl~~-N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfA 203 (657)
|...+...+..|+.++...-.+ |++.+..+... + ....|..-|.... ++....-|
T Consensus 252 --L~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~--------G-----------aI~~LV~lLl~s~---~~~v~~~A 307 (458)
T 3nmz_A 252 --LKSESEDLQQVIASVLRNLSWRADVNSKKTLREV--------G-----------SVKALMECALEVK---KESTLKSV 307 (458)
T ss_dssp --GGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHT--------T-----------HHHHHHHHHTTCC---SHHHHHHH
T ss_pred --HhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHc--------C-----------CHHHHHHHHhcCC---CHHHHHHH
Confidence 3456677777788888766554 66676555521 0 1122444332211 23334446
Q ss_pred HHHHHHHhcCCHHHHHHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCC-CCcchhHHHHHHHHHHHHhhcChH
Q 006200 204 ASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDG-TGKAGYIQLIILKLLVTWLADCPN 282 (657)
Q Consensus 204 a~iL~hll~dn~~~Ke~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~-ri~~~~~~~gyL~LL~~WL~e~p~ 282 (657)
+-+|..|-..++..|..+... .+ .+..++.+|. ...+. .+.+-..-.+.|.-|+.-+.+++.
T Consensus 308 ~~aL~nLs~~~~~nk~~I~~~--~G----------al~~Lv~LL~-----~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~ 370 (458)
T 3nmz_A 308 LSALWNLSAHCTENKADICAV--DG----------ALAFLVGTLT-----YRSQTNTLAIIESGGGILRNVSSLIATNED 370 (458)
T ss_dssp HHHHHHHHHHCHHHHHHHHHS--TT----------HHHHHHHHTT-----CCCSSSTTHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHccCCHHHHHHHHHh--cC----------cHHHHHHHhc-----CCCCcchHHHHHHHHHHHHHHHhcccCCHH
Confidence 667777766566666544321 11 3444444432 11111 001111112456666655668888
Q ss_pred HHHHhhcCCChHHHHHHHhhCCCCchHhHHHHHHHhh
Q 006200 283 AVHCFLDSRPHLTYLLELVSNPSATVCTRGLAAVLLG 319 (657)
Q Consensus 283 AV~~FL~~~s~l~~L~~~i~~~~~~~lVqGL~A~LLG 319 (657)
....+...+ .++.|++.+.+.+ .-|+--++..|+
T Consensus 371 ~~~~i~~~G-~i~~Lv~LL~~~~--~~v~~~A~~aL~ 404 (458)
T 3nmz_A 371 HRQILRENN-CLQTLLQHLKSHS--LTIVSNACGTLW 404 (458)
T ss_dssp HHHHHHHTT-HHHHHHHHSSCSC--HHHHHHHHHHHH
T ss_pred HHHHHHHcc-cHHHHHHHHcCCC--hHHHHHHHHHHH
Confidence 888888777 5999999986543 335555555555
No 45
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=88.69 E-value=4.3 Score=36.79 Aligned_cols=24 Identities=13% Similarity=0.093 Sum_probs=17.1
Q ss_pred HhHhHHHHHhhhhhhhHHHHHHHH
Q 006200 605 AELNDLLVCLGQEQSKVEKLSARL 628 (657)
Q Consensus 605 ~e~~dLl~ll~d~~~K~~~~k~~L 628 (657)
.|-.+||=+=.-+|--+.-||+.|
T Consensus 103 ~EYq~LlnvKl~Ld~EIatYRkLL 126 (129)
T 3tnu_B 103 REYQELMNTKLALDVEIATYRKLL 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 455667777667777788888655
No 46
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=88.47 E-value=4 Score=37.13 Aligned_cols=24 Identities=17% Similarity=0.117 Sum_probs=17.8
Q ss_pred HhHhHHHHHhhhhhhhHHHHHHHH
Q 006200 605 AELNDLLVCLGQEQSKVEKLSARL 628 (657)
Q Consensus 605 ~e~~dLl~ll~d~~~K~~~~k~~L 628 (657)
.|-.+||=+=.-+|--+.-||+.|
T Consensus 105 ~EYq~Ll~vKl~Ld~EIatYRkLL 128 (131)
T 3tnu_A 105 QEYKILLDVKTRLEQEIATYRRLL 128 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 456677777777888888888765
No 47
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=88.35 E-value=3.9 Score=38.28 Aligned_cols=63 Identities=19% Similarity=0.161 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 515 KDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 515 ~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
..+..+++.+..++.++..++.++..-.+....++.++..|+.+++.+|..+.++++|++.|=
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV 130 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555666666666666666677777777778888888888888888876663
No 48
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=88.08 E-value=14 Score=33.01 Aligned_cols=7 Identities=29% Similarity=0.710 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 006200 571 KEVKALK 577 (657)
Q Consensus 571 ~e~~~lr 577 (657)
+|+++++
T Consensus 108 eEl~eLq 114 (119)
T 3ol1_A 108 EEIQELQ 114 (119)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 49
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=88.04 E-value=7.7 Score=32.65 Aligned_cols=46 Identities=15% Similarity=0.335 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 006200 510 VETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSL 555 (657)
Q Consensus 510 ~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~l 555 (657)
++.|+.+-..+.+..+.++..+..+..+...+++-...|+.++.+|
T Consensus 29 ieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 29 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444555555555444444444443
No 50
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=87.63 E-value=4.4 Score=34.36 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=23.6
Q ss_pred HHHHHHHHHhHhHHHHHhhhhhhhHHHHHHHH
Q 006200 597 EEAQKESEAELNDLLVCLGQEQSKVEKLSARL 628 (657)
Q Consensus 597 ~e~~~~~~~e~~dLl~ll~d~~~K~~~~k~~L 628 (657)
+.....+++++|++-+.=.|++.|+.-++.-+
T Consensus 48 E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 48 ENTLQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777788888888888888888776543
No 51
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=87.59 E-value=16 Score=33.04 Aligned_cols=8 Identities=25% Similarity=0.605 Sum_probs=3.0
Q ss_pred HHHHhHhH
Q 006200 602 ESEAELND 609 (657)
Q Consensus 602 ~~~~e~~d 609 (657)
++++.++|
T Consensus 115 ~Lk~~led 122 (129)
T 2fxo_A 115 ELKRDIDD 122 (129)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 52
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=87.33 E-value=19 Score=33.77 Aligned_cols=21 Identities=24% Similarity=0.117 Sum_probs=9.8
Q ss_pred HHHHHHhHhHHHHHhhhhhhh
Q 006200 600 QKESEAELNDLLVCLGQEQSK 620 (657)
Q Consensus 600 ~~~~~~e~~dLl~ll~d~~~K 620 (657)
.+.++.++++.+-=|.....|
T Consensus 121 ~~~i~~eLd~tl~el~~~~~~ 141 (155)
T 2efr_A 121 YKAISEEMKQLEDKVEELLSK 141 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 444555555544444433333
No 53
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=87.15 E-value=14 Score=31.97 Aligned_cols=67 Identities=16% Similarity=0.211 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 511 ETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 511 e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
+.++.++...+...+...+....++.++........+.+.++.+|+.++..++.+.-.++..+..+.
T Consensus 5 d~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~ 71 (101)
T 3u59_A 5 EAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQ 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555544444444445555555555555666666666666666666666666555555544
No 54
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=86.16 E-value=39 Score=36.15 Aligned_cols=127 Identities=15% Similarity=0.067 Sum_probs=83.0
Q ss_pred CCcchhhHhhhhcCCCCCCchhHHHHHHHHHHHhhHhccCCCCCCCCCccchhhhHHHHHhhcHHHHHHHHHhccCCCch
Q 006200 1 MGFDPLISILKLRGSAYSFTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVESQWAPV 80 (657)
Q Consensus 1 ~~~~~~~~~l~~~~~~~~W~~Qk~~N~~~~L~ivrllV~~g~~~~~~~~~~~~~nQ~~l~q~glL~~ll~La~~s~~~p~ 80 (657)
|.+.+++.+|+-. .+.-| ..+...++-|.. +++ .+...+.+.|.+..|+++.- +. ..
T Consensus 2 ~~l~~lv~~L~s~----~~~~q-----~~A~~~L~~l~~-~~~----------~~~~~i~~~g~i~~Lv~lL~-s~--~~ 58 (457)
T 1xm9_A 2 LTIPKAVQYLSSQ----DEKYQ-----AIGAYYIQHTCF-QDE----------SAKQQVYQLGGICKLVDLLR-SP--NQ 58 (457)
T ss_dssp CCHHHHHHHHHSS----CTHHH-----HHHHHHHHHHTS-SCS----------SHHHHHHHTTHHHHHHHHTT-SS--CH
T ss_pred CCHHHHHHHHCCC----CHHHH-----HHHHHHHHHHHc-CCh----------HHHHHHHHcCCHHHHHHHHc-CC--CH
Confidence 4567788888743 22222 234455555543 221 45668899999999999877 43 57
Q ss_pred HhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchhHHhHHHHHHHHhhcCChhhHHHHHhhh
Q 006200 81 AVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAADRIFNSFCEKNPDGQAMLTSTL 160 (657)
Q Consensus 81 ~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~~r~AA~~cf~ayl~~N~~~q~~L~~tl 160 (657)
.++..|..++..+..+|+.|...+..--+ .|.++.||. ...+...+.-|..++...... ++.+..+++..
T Consensus 59 ~~~~~A~~aL~nLa~~~~~~k~~i~~~G~------i~~Lv~lL~---~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~ 128 (457)
T 1xm9_A 59 NVQQAAAGALRNLVFRSTTNKLETRRQNG------IREAVSLLR---RTGNAEIQKQLTGLLWNLSST-DELKEELIADA 128 (457)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHTTC------HHHHHHHHT---TCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCC------HHHHHHHHh---hCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhcc
Confidence 89999999999999999999888765432 455555542 144556666667777765555 66775444333
No 55
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=85.85 E-value=4.2 Score=34.47 Aligned_cols=11 Identities=18% Similarity=0.510 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 006200 511 ETLRKDLHEAS 521 (657)
Q Consensus 511 e~L~~~L~~~~ 521 (657)
+.||+|+..++
T Consensus 3 ~eLr~qi~~l~ 13 (86)
T 3swk_A 3 RELRRQVDQLT 13 (86)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444333
No 56
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=85.34 E-value=21 Score=35.43 Aligned_cols=191 Identities=14% Similarity=0.176 Sum_probs=107.5
Q ss_pred CCcchhhHhhhhcCCCCCCchhHHHHHHHHHHHhhHhccCCCCCCCCCccchhhhHHHHHhhcHHHHHHHHHhccCCCch
Q 006200 1 MGFDPLISILKLRGSAYSFTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVESQWAPV 80 (657)
Q Consensus 1 ~~~~~~~~~l~~~~~~~~W~~Qk~~N~~~~L~ivrllV~~g~~~~~~~~~~~~~nQ~~l~q~glL~~ll~La~~s~~~p~ 80 (657)
|.+.+++++|.-. ....+...+... .++.|.... ..|...+.+.|.+..|+++.- |. ..
T Consensus 8 ~~i~~lV~lL~s~----~~~~~~q~~Aa~---~l~~L~~~~-----------~~~r~~I~~~G~Ip~LV~lL~-s~--~~ 66 (233)
T 3tt9_A 8 MTLERAVSMLEAD----HMLPSRISAAAT---FIQHECFQK-----------SEARKRVNQLRGILKLLQLLK-VQ--NE 66 (233)
T ss_dssp CCHHHHHHTCCSS----CCCHHHHHHHHH---HHHHHHHHC-----------HHHHHHHHHTTHHHHHHHGGG-CC--CH
T ss_pred ccHHHHHHHhCCC----CchHHHHHHHHH---HHHHHHcCC-----------cHHHHHHHHcCCHHHHHHHHc-CC--CH
Confidence 4566777777533 222244444433 345554321 157888999999999999876 43 68
Q ss_pred HhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchhHHhHHHHHHHHhhcCChhhHHHHHhh-
Q 006200 81 AVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAADRIFNSFCEKNPDGQAMLTST- 159 (657)
Q Consensus 81 ~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~~r~AA~~cf~ayl~~N~~~q~~L~~t- 159 (657)
.++..|..++..+-.+|+.|....... + ..|.++.||.. ..+...+-.|..++.. +..++..+..|.+.
T Consensus 67 ~vq~~Aa~aL~nLa~~~~~nk~~I~~~-----G-aI~~Lv~lL~~---~~~~~~~e~a~~aL~n-LS~~~~~k~~i~~~~ 136 (233)
T 3tt9_A 67 DVQRAVCGALRNLVFEDNDNKLEVAEL-----N-GVPRLLQVLKQ---TRDLETKKQITGLLWN-LSSNDKLKNLMITEA 136 (233)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHT-----T-HHHHHHHHHHH---CCCHHHHHHHHHHHHH-HHTSGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHc-----C-CHHHHHHHHcc---CCCHHHHHHHHHHHHH-HHcChhhHHHHHhcc
Confidence 999999999999999999998876653 2 25566666543 3344444223322222 23455666444332
Q ss_pred hcCCCCCCCCCCCcccccCChhHHHhhhcccCC-----CCcchhHHHHHHHHHHHHhcCCHHHHHHHhccccccCCCCCC
Q 006200 160 LIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGE-----SDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLG 234 (657)
Q Consensus 160 l~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d-----~~~dpy~~wfAa~iL~hll~dn~~~Ke~al~V~l~~~~~~~~ 234 (657)
|.|-..- ......|....+ ...++....-|+-+|..|=..+++.|..+++-.
T Consensus 137 i~~Lv~l--------------l~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~--------- 193 (233)
T 3tt9_A 137 LLTLTEN--------------IIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCD--------- 193 (233)
T ss_dssp HHHHCCC--------------CCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTST---------
T ss_pred HHHHHHH--------------HhccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCC---------
Confidence 2110000 000001110000 112444445577888888777888888776532
Q ss_pred CCcchHHHHHHHHH
Q 006200 235 AAEPLMHRMVRYLA 248 (657)
Q Consensus 235 ~~e~ll~~i~~~l~ 248 (657)
| ++..++.++.
T Consensus 194 -G--li~~Lv~~l~ 204 (233)
T 3tt9_A 194 -G--LIDSLVHYVR 204 (233)
T ss_dssp -T--HHHHHHHHHH
T ss_pred -C--cHHHHHHHHH
Confidence 1 5566666655
No 57
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=85.18 E-value=20 Score=31.87 Aligned_cols=64 Identities=19% Similarity=0.205 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHH
Q 006200 511 ETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVK 574 (657)
Q Consensus 511 e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~ 574 (657)
..|+.++..+....+.+...++.+|-.-.++....-..-+.|..+..+||..-..+.=||.|+.
T Consensus 38 ~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 38 SVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445444444444444444455444444444444444555555555554444555555543
No 58
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=84.93 E-value=21 Score=32.13 Aligned_cols=32 Identities=16% Similarity=0.334 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 455 KDYVKRLKAFVEKQCSEIQKLLGRNATLAEEL 486 (657)
Q Consensus 455 ~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l 486 (657)
++-+..||..|..-..+|+.++.++.+|...+
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l 66 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAI 66 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44455566666666666666666666666544
No 59
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=84.59 E-value=7.4 Score=32.41 Aligned_cols=46 Identities=17% Similarity=0.228 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 532 AQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 532 ~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
..++..+......+.+.+.++.+|+.++..||.+.-+.++.+..+.
T Consensus 23 ~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~ 68 (81)
T 1ic2_A 23 EQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555666666666666555555555544443
No 60
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=84.42 E-value=4.6 Score=44.63 Aligned_cols=26 Identities=15% Similarity=0.307 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006200 461 LKAFVEKQCSEIQKLLGRNATLAEELAKI 489 (657)
Q Consensus 461 lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~ 489 (657)
|+..|-+|++.+ ..++..|..++.+.
T Consensus 51 LQglLdkqErDl---tkrINELKnqLEdl 76 (562)
T 3ghg_A 51 MKGLIDEVNQDF---TNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHTHH
T ss_pred hhhhHHhhcCcH---HHHHHHHHHHHHHH
Confidence 667777777665 44555555555444
No 61
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=83.53 E-value=49 Score=35.05 Aligned_cols=91 Identities=7% Similarity=0.082 Sum_probs=68.5
Q ss_pred hhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchh
Q 006200 54 TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQ 133 (657)
Q Consensus 54 ~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~ 133 (657)
.|+..+.+.|.+..|+++.- +. ...++..|+.+++.+..++..++..+....+ .|.+.. ++...+..
T Consensus 92 ~~~~~i~~~g~i~~L~~lL~-~~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~------i~~L~~----ll~~~~~~ 158 (529)
T 1jdh_A 92 EGLLAIFKSGGIPALVKMLG-SP--VDSVLFYAITTLHNLLLHQEGAKMAVRLAGG------LQKMVA----LLNKTNVK 158 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHTT-CS--CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTH------HHHHHH----GGGCCCHH
T ss_pred hhHHHHHHcCCHHHHHHHHc-CC--CHHHHHHHHHHHHHHhcCCcchHHHHHHcCC------HHHHHH----HHhcCCHH
Confidence 57888999999999999865 33 5789999999999999988777776644322 233333 34456677
Q ss_pred HHhHHHHHHHHhhcCChhhHHHHH
Q 006200 134 EFLAADRIFNSFCEKNPDGQAMLT 157 (657)
Q Consensus 134 ~r~AA~~cf~ayl~~N~~~q~~L~ 157 (657)
.+.++..++..+..+|++.+..+.
T Consensus 159 ~~~~~~~~L~~la~~~~~~~~~i~ 182 (529)
T 1jdh_A 159 FLAITTDCLQILAYGNQESKLIIL 182 (529)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 788888999999999988886554
No 62
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=83.45 E-value=6.1 Score=36.43 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=12.2
Q ss_pred HHhHHHhHHHHhHHHHHhHhHHHHHH
Q 006200 549 ESDLKSLSDAYNSLEQTNFHLEKEVK 574 (657)
Q Consensus 549 e~~l~~ls~~~~~Le~~~~~le~e~~ 574 (657)
+..+..|...++.|+.++.+|+.++.
T Consensus 109 ~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 109 AKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444455555555555443
No 63
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=83.19 E-value=21 Score=32.34 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 458 VKRLKAFVEKQCSEIQKLLGRNATLAEEL 486 (657)
Q Consensus 458 v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l 486 (657)
+..||..|..-..+|+.++..+.+|...+
T Consensus 40 i~elrr~iq~L~~el~~l~~~~~sLE~~l 68 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSMKASLENSL 68 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33455555555555555555555555543
No 64
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=82.67 E-value=30 Score=31.95 Aligned_cols=77 Identities=19% Similarity=0.283 Sum_probs=52.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHH
Q 006200 452 ESDKDYVKRLKAFVEKQCSEI----QKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEIL 527 (657)
Q Consensus 452 ~~s~~~v~~lk~~i~~Q~~ei----q~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l 527 (657)
...|.||.+=|..+...+..+ .+|+.-+..|..++.+.|- | ....+++.+..++..+.+.++.+
T Consensus 6 ~~~R~y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~Rgv--------r----P~~~ql~~v~kdi~~a~~eL~~m 73 (141)
T 3okq_A 6 SSNRMYMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRS--------Q----PAKKKLETVSKDLENAQADVLKL 73 (141)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------C----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCC--------C----CCHHHHHHHHHHHHHHHHHHHHH
Confidence 357999999999888887654 5666667777777765552 1 33678888888888888777655
Q ss_pred HH----HH----HHHHHHHHH
Q 006200 528 KE----EK----AQIESDSSM 540 (657)
Q Consensus 528 ~~----e~----~~~eae~~~ 540 (657)
+. ++ ..||+|+.+
T Consensus 74 ~~~i~~ekP~WKKiWE~EL~~ 94 (141)
T 3okq_A 74 QEFIDTEKPHWKKTWEAELDK 94 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCchhHHHHHHHHHH
Confidence 44 32 555555554
No 65
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=81.73 E-value=13 Score=40.07 Aligned_cols=12 Identities=33% Similarity=0.614 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 006200 513 LRKDLHEASQRL 524 (657)
Q Consensus 513 L~~~L~~~~~~~ 524 (657)
|+++|.+.++..
T Consensus 402 ~~~~~~~~~~~~ 413 (471)
T 3mq9_A 402 LQQELTEAQKGF 413 (471)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhH
Confidence 455555544443
No 66
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=81.34 E-value=61 Score=36.05 Aligned_cols=187 Identities=14% Similarity=0.124 Sum_probs=113.2
Q ss_pred HHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchhHHhH
Q 006200 58 VLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLA 137 (657)
Q Consensus 58 ~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~~r~A 137 (657)
+....|.+..|..+.- +. ...||..|+.+++.+..++. +...+.. .+ -++..|+..+-...+...+.+
T Consensus 9 ~~~~~g~i~~Lv~lL~-~~--~~~vr~~A~~~L~~La~~~~-~~~~i~~-----~~---~~i~~Lv~~L~~~~~~~~~~~ 76 (644)
T 2z6h_A 9 AELATRAIPELTKLLN-DE--DQVVVNKAAVMVHQLSKKEA-SRHAIMR-----SP---QMVSAIVRTMQNTNDVETARC 76 (644)
T ss_dssp ---CTTTHHHHHHHHT-CS--CHHHHHHHHHHHHHHHTSTT-HHHHHTT-----CH---HHHHHHHHHHHSCCCHHHHHH
T ss_pred hhhhhchHHHHHHHHc-CC--CHHHHHHHHHHHHHHHCCCh-hHHHHHh-----cc---ChHHHHHHHHhcCCCHHHHHH
Confidence 3467788888888776 32 67999999999999998775 3322211 11 133344444434456777778
Q ss_pred HHHHHHHhhcCChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhcCCHHH
Q 006200 138 ADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQC 217 (657)
Q Consensus 138 A~~cf~ayl~~N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~dn~~~ 217 (657)
|+.+|.. +..+++.+..+... .....|+.-|-+ .++.....|+.+|.++..+++..
T Consensus 77 A~~~L~~-Ls~~~~~~~~i~~~-------------------g~i~~Lv~lL~~----~~~~v~~~A~~aL~nL~~~~~~~ 132 (644)
T 2z6h_A 77 TAGTLHN-LSHHREGLLAIFKS-------------------GGIPALVKMLGS----PVDSVLFYAITTLHNLLLHQEGA 132 (644)
T ss_dssp HHHHHHH-HTTSHHHHHHHHTT-------------------THHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHH-HhcChhhHHHHHHc-------------------CCHHHHHHHHhC----CCHHHHHHHHHHHHHHHhCcchh
Confidence 8888885 55556666544421 122335554423 24566677888999998877665
Q ss_pred HHHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhhcChHHHHHhhcCCChHHHH
Q 006200 218 KERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYL 297 (657)
Q Consensus 218 Ke~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~e~p~AV~~FL~~~s~l~~L 297 (657)
+..+..- ..+..+..++. ..+ ...+...+..|..|..+++.....+...+ .++.|
T Consensus 133 ~~~v~~~-------------g~i~~Lv~lL~------~~~-----~~~~~~a~~~L~~La~~~~~~~~~i~~~g-~v~~L 187 (644)
T 2z6h_A 133 KMAVRLA-------------GGLQKMVALLN------KTN-----VKFLAITTDCLQILAYGNQESKLIILASG-GPQAL 187 (644)
T ss_dssp HHHHHHT-------------THHHHHHHGGG------CCC-----HHHHHHHHHHHHHHHTTCHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHC-------------CChHHHHHHHC------cCC-----HHHHHHHHHHHHHHHhcCcHHHHHHHHcC-ChHHH
Confidence 5543211 13444444432 111 12333446677888888888888888776 69999
Q ss_pred HHHhhCCC
Q 006200 298 LELVSNPS 305 (657)
Q Consensus 298 ~~~i~~~~ 305 (657)
+..+.+.+
T Consensus 188 v~lL~~~~ 195 (644)
T 2z6h_A 188 VNIMRTYT 195 (644)
T ss_dssp HHHHTTCC
T ss_pred HHHHHcCC
Confidence 99886554
No 67
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=81.01 E-value=8.1 Score=40.64 Aligned_cols=87 Identities=14% Similarity=0.239 Sum_probs=67.1
Q ss_pred hhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchh
Q 006200 54 TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQ 133 (657)
Q Consensus 54 ~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~ 133 (657)
.+...+.++|.+..|+.+.- +. ...++..|..+++.+-.|++.++..+...-+ .|.+.. +|...+..
T Consensus 254 ~~~~~i~~~g~i~~Lv~lL~-~~--~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~------i~~Lv~----LL~s~~~~ 320 (354)
T 3nmw_A 254 DHRQILRENNCLQTLLQHLK-SH--SLTIVSNACGTLWNLSARNPKDQEALWDMGA------VSMLKN----LIHSKHKM 320 (354)
T ss_dssp HHHHHHHTTTHHHHHHHHTT-CS--CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTH------HHHHHT----TTTCSSHH
T ss_pred HHHHHHHHcCCHHHHHHHHc-CC--ChHHHHHHHHHHHHHhCCCHHHHHHHHHCCC------HHHHHH----HHhCCCHH
Confidence 67888999999999999877 32 6789999999999999899988888755422 333333 34556666
Q ss_pred HHhHHHHHHHHhhcCChhhH
Q 006200 134 EFLAADRIFNSFCEKNPDGQ 153 (657)
Q Consensus 134 ~r~AA~~cf~ayl~~N~~~q 153 (657)
.+..|+..+...+.+++.-+
T Consensus 321 i~~~A~~aL~nL~~~~~~~~ 340 (354)
T 3nmw_A 321 IAMGSAAALRNLMANRPAKY 340 (354)
T ss_dssp HHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHcCCHHHH
Confidence 77788888888888887755
No 68
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=79.32 E-value=22 Score=28.91 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=9.4
Q ss_pred hHHHHhHHHHHhHhHHHHHHHH
Q 006200 555 LSDAYNSLEQTNFHLEKEVKAL 576 (657)
Q Consensus 555 ls~~~~~Le~~~~~le~e~~~l 576 (657)
..+.+..|...+++|+.|+..+
T Consensus 54 ~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 54 AKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3333344444444444444444
No 69
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=78.44 E-value=10 Score=41.45 Aligned_cols=85 Identities=14% Similarity=0.248 Sum_probs=64.7
Q ss_pred hhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchh
Q 006200 54 TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQ 133 (657)
Q Consensus 54 ~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~ 133 (657)
.+...+.++|.+..|+.+.- + .+..|+.+|..+++.+-.|++.++..+.+.-+ .|.+..| |...+..
T Consensus 370 ~~~~~i~~~G~i~~Lv~LL~-~--~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~------I~~Lv~L----L~s~~~~ 436 (458)
T 3nmz_A 370 DHRQILRENNCLQTLLQHLK-S--HSLTIVSNACGTLWNLSARNPKDQEALWDMGA------VSMLKNL----IHSKHKM 436 (458)
T ss_dssp HHHHHHHHTTHHHHHHHHSS-C--SCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTH------HHHHHTT----TTCSSHH
T ss_pred HHHHHHHHcccHHHHHHHHc-C--CChHHHHHHHHHHHHHHcCCHHHHHHHHHCCC------HHHHHHH----HhCCCHH
Confidence 67888999999999999876 3 37789999999999999899999888765422 3333333 4555666
Q ss_pred HHhHHHHHHHHhhcCChh
Q 006200 134 EFLAADRIFNSFCEKNPD 151 (657)
Q Consensus 134 ~r~AA~~cf~ayl~~N~~ 151 (657)
.+-.|+..+...+.+||.
T Consensus 437 v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 437 IAMGSAAALRNLMANRPA 454 (458)
T ss_dssp HHHHHHHHHHHHHTCCSC
T ss_pred HHHHHHHHHHHHHcCCHh
Confidence 677788888888887753
No 70
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=77.81 E-value=11 Score=32.87 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=33.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006200 453 SDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAK 488 (657)
Q Consensus 453 ~s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~ 488 (657)
.+.+-+..||..|..-..+...|+.++..|+.+|++
T Consensus 9 ~~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 9 FSREEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788899999999999999999999999999987
No 71
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=76.08 E-value=33 Score=28.62 Aligned_cols=16 Identities=31% Similarity=0.619 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 006200 471 EIQKLLGRNATLAEEL 486 (657)
Q Consensus 471 eiq~L~~~~~~L~~~l 486 (657)
+|+.++.++++|...+
T Consensus 2 el~~l~~~~~sLE~~l 17 (84)
T 1gk4_A 2 EVDALKGTNESLERQM 17 (84)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3455555555555543
No 72
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=75.82 E-value=33 Score=40.34 Aligned_cols=132 Identities=8% Similarity=0.125 Sum_probs=87.1
Q ss_pred hhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchh
Q 006200 54 TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQ 133 (657)
Q Consensus 54 ~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~ 133 (657)
.++..+.+.|.+..|..+.++ . ...|+..|+.+++.+..+ +.+|..|.. . ....|. |-.++...+..
T Consensus 614 ~~~~~Ii~aG~l~~Lv~LL~s-~--~~~Vq~~A~~~L~NLa~~-~~~~~~~v~---~--~g~l~~----Lv~LL~s~d~~ 680 (810)
T 3now_A 614 SVRQRIIKEQGVSKIEYYLME-D--HLYLTRAAAQCLCNLVMS-EDVIKMFEG---N--NDRVKF----LALLCEDEDEE 680 (810)
T ss_dssp HHHHHHHHTTHHHHHHHHHHS-C--CTTHHHHHHHHHHHHTTS-HHHHHHHHS---S--SSHHHH----HHHGGGCSSHH
T ss_pred HHHHHHHHcCCHHHHHHHHcC-C--CHHHHHHHHHHHHHHhCC-hHHHHHHHh---c--cCcHHH----HHHHhcCCCHH
Confidence 567788999999999999883 3 578999999999999985 457888761 1 111232 23344667778
Q ss_pred HHhHHHHHHHHhhcCChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhcC
Q 006200 134 EFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMD 213 (657)
Q Consensus 134 ~r~AA~~cf~ayl~~N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~d 213 (657)
.+.+|+.++-....+++.....+++. ......|++-|-+ .|+.....|+.++..+...
T Consensus 681 vq~~Aa~ALanLt~~s~~~~~~ii~~------------------~g~I~~Lv~LL~s----~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 681 TATACAGALAIITSVSVKCCEKILAI------------------ASWLDILHTLIAN----PSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHTS------------------TTHHHHHHHHHTC----SSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHH------------------cCCHHHHHHHHCC----CCHHHHHHHHHHHHHHHhC
Confidence 88888899988888776655444431 0011234433322 2344455688899999987
Q ss_pred CHHHHHH
Q 006200 214 NLQCKER 220 (657)
Q Consensus 214 n~~~Ke~ 220 (657)
+++.+..
T Consensus 739 s~e~~~~ 745 (810)
T 3now_A 739 GEEIAKK 745 (810)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 7655443
No 73
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=75.79 E-value=40 Score=29.81 Aligned_cols=33 Identities=12% Similarity=0.046 Sum_probs=17.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 453 SDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEE 485 (657)
Q Consensus 453 ~s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~ 485 (657)
+++.-++-|+..+..-.+.+..-+.++..|+++
T Consensus 21 ~~~~ei~~L~~~L~~AEeaL~~Kq~~idelk~e 53 (110)
T 2v4h_A 21 MASMQLEDLRQQLQQAEEALVAKQELIDKLKEE 53 (110)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666665555555544454444443
No 74
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=75.14 E-value=40 Score=29.13 Aligned_cols=17 Identities=18% Similarity=0.102 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q 006200 535 ESDSSMYRNLAAKMESD 551 (657)
Q Consensus 535 eae~~~~~~~a~~le~~ 551 (657)
+.++..++..+..+|.+
T Consensus 43 E~Ei~sL~kk~~~lE~e 59 (101)
T 3u1c_A 43 EDDIVQLEKQLRVTEDS 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 75
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=74.91 E-value=33 Score=29.31 Aligned_cols=35 Identities=14% Similarity=0.343 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKM 548 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~l 548 (657)
..+++.|+++++.+.. ++++++.++.+++..+.++
T Consensus 55 e~~i~~Lr~~i~~~~~-------ek~~l~~e~dnl~~~~~~~ 89 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTN-------DKARVEVERDNLAEDIMRL 89 (93)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 4556666666655544 4555555555544433333
No 76
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=74.16 E-value=34 Score=28.94 Aligned_cols=46 Identities=30% Similarity=0.413 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 525 EILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 525 e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
..++.....+..+..++... +..+.+....|......|+.++..+.
T Consensus 38 kele~~~~~l~~ek~~L~~q-------l~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 38 KELEEQNVTLLEQKNDLFGS-------MKQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555554444 33333444444444444555554443
No 77
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=74.10 E-value=1.3e+02 Score=34.57 Aligned_cols=184 Identities=15% Similarity=0.131 Sum_probs=111.0
Q ss_pred hhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchhHHhHHHH
Q 006200 61 QKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAADR 140 (657)
Q Consensus 61 q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~~r~AA~~ 140 (657)
..|.+..|+.+.- +. ...||..|+.+++.+...+. +...+. ..+ -++..|+..+-...+...+..|+.
T Consensus 148 ~~g~ip~Lv~lL~-~~--d~~vr~~A~~~L~~L~~~~~-~~~~i~-----~~~---~~i~~Lv~~L~~~~d~~vr~~Aa~ 215 (780)
T 2z6g_A 148 ATRAIPELTKLLN-DE--DQVVVNKAAVMVHQLSKKEA-SRHAIM-----RSP---QMVSAIVRTMQNTNDVETARCTSG 215 (780)
T ss_dssp HHHHHHHHHHHHH-CS--CHHHHHHHHHHHHHHHTSHH-HHHHHT-----TCH---HHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HhCCHHHHHHHHC-CC--CHHHHHHHHHHHHHHhCCCh-hHHHHH-----hcc---ChHHHHHHHHcCCCCHHHHHHHHH
Confidence 3777778887666 33 67899999999999887543 333221 112 133444444434457777878888
Q ss_pred HHHHhhcCChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhcCCHHHHHH
Q 006200 141 IFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKER 220 (657)
Q Consensus 141 cf~ayl~~N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~dn~~~Ke~ 220 (657)
+|.. +..+++.+..+... .....|+.-|-+. ++.....|+.+|.++..+++..|..
T Consensus 216 aL~~-Ls~~~~~~~~i~~~-------------------g~I~~Lv~lL~~~----~~~v~~~A~~aL~nLa~~~~~~~~~ 271 (780)
T 2z6g_A 216 TLHN-LSHHREGLLAIFKS-------------------GGIPALVNMLGSP----VDSVLFHAITTLHNLLLHQEGAKMA 271 (780)
T ss_dssp HHHH-HHTSHHHHHHHHHT-------------------THHHHHHHHTTCS----CHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred HHHH-HhCCchhHHHHHHc-------------------CCHHHHHHHHcCC----CHHHHHHHHHHHHHHhCCChhhHHH
Confidence 8887 55555555433321 1233455544222 3555666888999998887776664
Q ss_pred HhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhhcChHHHHHhhcCCChHHHHHHH
Q 006200 221 VLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLTYLLEL 300 (657)
Q Consensus 221 al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~e~p~AV~~FL~~~s~l~~L~~~ 300 (657)
++.-- .+..+..++. ..+ ...+...+..|..|.++++.....|...+ .++.|+..
T Consensus 272 v~~~g-------------~v~~Lv~lL~------~~~-----~~v~~~a~~aL~~La~~~~e~~~~i~~~~-~i~~Lv~l 326 (780)
T 2z6g_A 272 VRLAG-------------GLQKMVALLN------KTN-----VKFLAITTDCLQILAYGNQESKLIILASG-GPQALVNI 326 (780)
T ss_dssp HHHTT-------------HHHHHHHGGG------CCC-----HHHHHHHHHHHHHHHTTCHHHHHHHHTTT-HHHHHHHH
T ss_pred HHHcC-------------CHHHHHHHHh------cCC-----HHHHHHHHHHHHHHhcCChHHHHHHHHcC-CHHHHHHH
Confidence 43211 3444444332 111 11233345677789889998888888875 69999998
Q ss_pred hhCCC
Q 006200 301 VSNPS 305 (657)
Q Consensus 301 i~~~~ 305 (657)
+.+.+
T Consensus 327 L~~~~ 331 (780)
T 2z6g_A 327 MRTYT 331 (780)
T ss_dssp HTTCC
T ss_pred HhcCC
Confidence 86554
No 78
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=73.95 E-value=18 Score=32.00 Aligned_cols=26 Identities=12% Similarity=-0.011 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 461 LKAFVEKQCSEIQKLLGRNATLAEEL 486 (657)
Q Consensus 461 lk~~i~~Q~~eiq~L~~~~~~L~~~l 486 (657)
..+.+..+..+|.+|++.++.+.+.+
T Consensus 36 AEeaL~~Kq~~idelk~ei~q~~~~l 61 (110)
T 2v4h_A 36 AEEALVAKQELIDKLKEEAEQHKIVM 61 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777766666644
No 79
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=72.78 E-value=29 Score=28.96 Aligned_cols=36 Identities=14% Similarity=0.384 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 509 QVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNL 544 (657)
Q Consensus 509 q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~ 544 (657)
++..++.+++...+.+..|=+=|..++.|++.|+++
T Consensus 41 eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkL 76 (84)
T 1gk4_A 41 EIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKL 76 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 334444444444444444444445555555555544
No 80
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=72.52 E-value=47 Score=28.69 Aligned_cols=63 Identities=13% Similarity=0.244 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 515 KDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 515 ~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
+.++.-++.+...-..+++..+.+.+++..+.+--.+++++.++.+.|-..++++|.|++.++
T Consensus 41 qaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~k 103 (114)
T 2xzr_A 41 QSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIK 103 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 334444444444455556677777777777877777888888888899999999999988876
No 81
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=71.29 E-value=26 Score=29.20 Aligned_cols=51 Identities=18% Similarity=0.320 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 528 KEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 528 ~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
+....+..+|++.++.+-.+|...-.++.+.++.|+++..++++.+..++.
T Consensus 17 ~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~ 67 (78)
T 3iv1_A 17 KEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKK 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566788888888888888888888888888888888888888877764
No 82
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=71.23 E-value=34 Score=27.74 Aligned_cols=56 Identities=23% Similarity=0.263 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHH
Q 006200 509 QVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQ 564 (657)
Q Consensus 509 q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~ 564 (657)
|..+|..+|.+.+.+++.|+-=.-.+++.+..|-..-.+||.+...+....+.|+.
T Consensus 4 QNKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k 59 (74)
T 2q6q_A 4 QNKELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEK 59 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHh
Confidence 45667777877777777777666777788888888888888777666666655554
No 83
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=71.20 E-value=19 Score=30.32 Aligned_cols=10 Identities=30% Similarity=0.564 Sum_probs=4.5
Q ss_pred hHHHHHHHHH
Q 006200 568 HLEKEVKALK 577 (657)
Q Consensus 568 ~le~e~~~lr 577 (657)
+|+.|+++-|
T Consensus 67 ~Le~EIatYR 76 (86)
T 1x8y_A 67 ALDMEIHAYR 76 (86)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 3444444443
No 84
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=70.77 E-value=51 Score=28.37 Aligned_cols=6 Identities=50% Similarity=0.628 Sum_probs=2.2
Q ss_pred HHHHHH
Q 006200 571 KEVKAL 576 (657)
Q Consensus 571 ~e~~~l 576 (657)
.+++.|
T Consensus 86 ~evasL 91 (101)
T 3u59_A 86 AEVASL 91 (101)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 85
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=70.09 E-value=90 Score=34.41 Aligned_cols=102 Identities=17% Similarity=0.162 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 460 RLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQRLEILKEEKAQIESDSS 539 (657)
Q Consensus 460 ~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~ 539 (657)
.|...|..=..|+...+..|+.+++..++.- +....+.+.++++-+..+++.+.. ++.-+++++
T Consensus 6 ~yq~~la~yq~elarvqkana~aka~Ye~~~-------------ae~~a~n~~i~aeNeaikkrNa~a---ka~Ye~~l~ 69 (497)
T 3iox_A 6 DYQAKLTAYQTELARVQKANADAKAAYEAAV-------------AANNAANAALTAENTAIKKRNADA---KADYEAKLA 69 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 3556666666677666666666666432111 111223333333333333333221 233333444
Q ss_pred HHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 540 MYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 540 ~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
.|.+-..+-+.++..-..++..-+.+..+..+++++++
T Consensus 70 kY~~dlakY~~~~AeY~~kl~aYe~~~~~~~k~lae~e 107 (497)
T 3iox_A 70 KYQADLAKYQKDLADYPVKLKAYEDEQTSIKAALAELE 107 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555555544444444445555555666666655
No 86
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=69.10 E-value=19 Score=30.32 Aligned_cols=39 Identities=15% Similarity=0.306 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 508 VQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAA 546 (657)
Q Consensus 508 ~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~ 546 (657)
.++.+++.+++...+.+..|=+=|..++.|++.|+++..
T Consensus 42 ~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 42 REMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 344455555555555555555566677777777776654
No 87
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=68.78 E-value=1.2e+02 Score=33.18 Aligned_cols=15 Identities=20% Similarity=0.359 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHH
Q 006200 470 SEIQKLLGRNATLAE 484 (657)
Q Consensus 470 ~eiq~L~~~~~~L~~ 484 (657)
+.|++|+..+..++.
T Consensus 100 ~~LqeLe~~l~~lsn 114 (464)
T 1m1j_B 100 PVLRDLKDRVAKFSD 114 (464)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhh
Confidence 445555555555543
No 88
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=68.53 E-value=57 Score=28.03 Aligned_cols=17 Identities=24% Similarity=0.659 Sum_probs=6.8
Q ss_pred HhHHHHHhHhHHHHHHH
Q 006200 559 YNSLEQTNFHLEKEVKA 575 (657)
Q Consensus 559 ~~~Le~~~~~le~e~~~ 575 (657)
||.+..+...+..+...
T Consensus 62 yn~~~~ql~e~~dE~~S 78 (96)
T 3q8t_A 62 YSEFKRQQLELDDELKS 78 (96)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444443333
No 89
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=67.90 E-value=60 Score=28.11 Aligned_cols=49 Identities=18% Similarity=0.275 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhH
Q 006200 508 VQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLS 556 (657)
Q Consensus 508 ~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls 556 (657)
.+++.++.++..+..+....+.++.++..++..-+..-...|....++.
T Consensus 5 ~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie 53 (97)
T 2eqb_B 5 SNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLN 53 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666555555555555555555555544444444443333333
No 90
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=67.57 E-value=1.1e+02 Score=34.39 Aligned_cols=141 Identities=13% Similarity=0.049 Sum_probs=88.7
Q ss_pred hhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhc-ChhhHHHhhccccCCCCccchHHHHHHHHHhccCch
Q 006200 54 TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAA-HPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSM 132 (657)
Q Consensus 54 ~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrg-n~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~ 132 (657)
.|...+.+.|.+..|+++.- |. ...|+..|..++..+..| |..|.......-+ .|.++.||.. ..+.
T Consensus 81 ~~k~~V~~~G~Ip~LV~LL~-s~--~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~Ga------Ip~LV~LL~s---~~~~ 148 (584)
T 3l6x_A 81 KVKTDVRKLKGIPVLVGLLD-HP--KKEVHLGACGALKNISFGRDQDNKIAIKNCDG------VPALVRLLRK---ARDM 148 (584)
T ss_dssp HHHHHHHHTTHHHHHHHGGG-CS--SHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTH------HHHHHHHHHH---CCSH
T ss_pred HHHHHHHHcCCcHHHHHHHC-CC--CHHHHHHHHHHHHHHHccCCHHHHHHHHHcCC------HHHHHHHHcC---CCCH
Confidence 67888999999999999876 43 689999999999999987 7888888765422 5556666553 2344
Q ss_pred hHHhHHHHHHHHhhcCChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCC----------CCcchhHHHH
Q 006200 133 QEFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGE----------SDGDLEVCCR 202 (657)
Q Consensus 133 ~~r~AA~~cf~ayl~~N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d----------~~~dpy~~wf 202 (657)
..+..|..|+... ..|++.+..|+..-+| ....+|+-+...+. ...++...+-
T Consensus 149 ~~~e~aa~aL~nL-S~~~~~k~~I~~~alp----------------~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~n 211 (584)
T 3l6x_A 149 DLTEVITGTLWNL-SSHDSIKMEIVDHALH----------------ALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTN 211 (584)
T ss_dssp HHHHHHHHHHHHH-TTSGGGHHHHHHHTHH----------------HHHHHTHHHHHCCC----------CCCCHHHHHH
T ss_pred HHHHHHHHHHHHH-hCCchhhHHHHhccHH----------------HHHHHHhcccccccccccccccccccccHHHHHH
Confidence 4444444555543 3477777555432211 11122211110100 1123455666
Q ss_pred HHHHHHHHhcCCHHHHHHHhc
Q 006200 203 AASVLSHILMDNLQCKERVLR 223 (657)
Q Consensus 203 Aa~iL~hll~dn~~~Ke~al~ 223 (657)
|+-+|..|=.++++.|..+++
T Consensus 212 Aa~~L~NLs~~~~~~R~~i~~ 232 (584)
T 3l6x_A 212 TAGCLRNVSSERSEARRKLRE 232 (584)
T ss_dssp HHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHH
Confidence 888888888888887776654
No 91
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=67.46 E-value=32 Score=36.93 Aligned_cols=136 Identities=12% Similarity=0.124 Sum_probs=82.3
Q ss_pred HHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchhHH
Q 006200 56 KTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEF 135 (657)
Q Consensus 56 Q~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~~r 135 (657)
...+|+.|++..|+.+.-.+ -...++..|..+++.+.+|+.......++..|-..+ ..|.++.| |...+...+
T Consensus 276 ~~~l~~~~~l~~L~~lL~~~--~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~-~l~~Lv~L----L~~~~~~v~ 348 (457)
T 1xm9_A 276 SGWLYHSDAIRTYLNLMGKS--KKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEK-GLPQIARL----LQSGNSDVV 348 (457)
T ss_dssp GGGGGSHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSC-CHHHHHHH----TTCSCHHHH
T ss_pred HHHHhCcchHHHHHHHHhhc--CCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcC-CchHHHHH----HhCCCHhHH
Confidence 45789999999999988743 246899999999999999986432222222221112 13444443 445566777
Q ss_pred hHHHHHHHHhhcCChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCC--cchhHHHHHHHHHHHHhcC
Q 006200 136 LAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESD--GDLEVCCRAASVLSHILMD 213 (657)
Q Consensus 136 ~AA~~cf~ayl~~N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~--~dpy~~wfAa~iL~hll~d 213 (657)
..|+.++..+. .++..+..|....+ ..|++-|.+.++. .++...+-++-.|..++..
T Consensus 349 ~~A~~aL~nls-~~~~~~~~i~~~~i--------------------~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~ 407 (457)
T 1xm9_A 349 RSGASLLSNMS-RHPLLHRVMGNQVF--------------------PEVTRLLTSHTGNTSNSEDILSSACYTVRNLMAS 407 (457)
T ss_dssp HHHHHHHHHHH-TSGGGHHHHHHHTH--------------------HHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHh-cCHHHHHHHHHhhh--------------------HHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhc
Confidence 88888888664 46677766654332 2244444333331 1233455566677777777
Q ss_pred CHHHHH
Q 006200 214 NLQCKE 219 (657)
Q Consensus 214 n~~~Ke 219 (657)
+++...
T Consensus 408 ~~~~~~ 413 (457)
T 1xm9_A 408 QPQLAK 413 (457)
T ss_dssp CTHHHH
T ss_pred CHHHHH
Confidence 665433
No 92
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=67.22 E-value=43 Score=27.48 Aligned_cols=67 Identities=21% Similarity=0.233 Sum_probs=35.2
Q ss_pred HhHHHHhHHHHHhHhHHHHHHHHHcCCCCCCcccHHHHHHHHHHHHHHHHHHhHhHHHHHhhhhhhhHHHHHHHHHHcCc
Q 006200 554 SLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAEAREEAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGE 633 (657)
Q Consensus 554 ~ls~~~~~Le~~~~~le~e~~~lr~~~~~~~~~~l~~~~~~~~~e~~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~lg~ 633 (657)
+++.++..+|.+|..|+..+..+++ +++..+ .++...+.|+--++..|+-==-.+..++..|-.||.
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~--------~Le~s~-----~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL~~ 70 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQ--------RLEKSQ-----SEQDAFRSNLKTLLEILDGKIFELTELRDNLAKLLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHH--------HHHHHH-----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcc
Confidence 3455666677777777777777764 233322 233444445444555444222233445556655554
No 93
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=67.21 E-value=14 Score=34.30 Aligned_cols=7 Identities=29% Similarity=0.553 Sum_probs=0.0
Q ss_pred ccHHHHH
Q 006200 586 PDVEAIK 592 (657)
Q Consensus 586 ~~l~~~~ 592 (657)
.||++.+
T Consensus 122 RDLeASR 128 (146)
T 2xnx_M 122 RDLDASR 128 (146)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 3555544
No 94
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=67.20 E-value=61 Score=27.90 Aligned_cols=37 Identities=3% Similarity=0.115 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 513 LRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKME 549 (657)
Q Consensus 513 L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le 549 (657)
+..++++....+..|...+..+++++..++.....++
T Consensus 8 ~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~ 44 (112)
T 1l8d_A 8 LETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELK 44 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444444444444444444444443
No 95
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=66.93 E-value=61 Score=30.28 Aligned_cols=34 Identities=9% Similarity=0.086 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 511 ETLRKDLHEASQRLEILKEEKAQIESDSSMYRNL 544 (657)
Q Consensus 511 e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~ 544 (657)
.+|...+.+..+.++.+.+|...++.+...+...
T Consensus 85 ~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~k 118 (152)
T 3a7p_A 85 RRLKEVIALKNKNTERLNAALISGTIENNVLQQK 118 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666555555543333
No 96
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=66.84 E-value=52 Score=29.36 Aligned_cols=8 Identities=25% Similarity=0.173 Sum_probs=4.2
Q ss_pred HHHHHHHH
Q 006200 456 DYVKRLKA 463 (657)
Q Consensus 456 ~~v~~lk~ 463 (657)
.-.+.||.
T Consensus 12 AC~dGLrA 19 (121)
T 3mq7_A 12 AARDGLRA 19 (121)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34555555
No 97
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=66.79 E-value=51 Score=28.04 Aligned_cols=33 Identities=9% Similarity=0.194 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 517 LHEASQRLEILKEEKAQIESDSSMYRNLAAKME 549 (657)
Q Consensus 517 L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le 549 (657)
+...++++..+..++..++.+.........+++
T Consensus 10 f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~ 42 (107)
T 1fxk_A 10 FQQLQQQAQAISVQKQTVEMQINETQKALEELS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444455444444444444
No 98
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=66.65 E-value=42 Score=27.70 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhH
Q 006200 526 ILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNS 561 (657)
Q Consensus 526 ~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~ 561 (657)
..+....+.+.++..++..+..+|.++..+..++..
T Consensus 31 ~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 31 AAEERSKQLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344556666666666666666666655544333
No 99
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=66.41 E-value=52 Score=27.54 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcC
Q 006200 533 QIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSG 579 (657)
Q Consensus 533 ~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~ 579 (657)
.+..|+...+..--..++.|+....+..+|..++.++++++++++..
T Consensus 28 ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 28 SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQAE 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34444455555555566677777777777888888888888888754
No 100
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=66.18 E-value=2.1e+02 Score=33.61 Aligned_cols=201 Identities=14% Similarity=0.122 Sum_probs=118.5
Q ss_pred HHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchhHHh
Q 006200 57 TVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFL 136 (657)
Q Consensus 57 ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~~r~ 136 (657)
+++.++|.+..|..+.- |+ ...||.+|..+++.+- |++.++..+.+--+ .|.++.|| ...+...+-
T Consensus 489 ~~VveaGaVp~LV~LL~-s~--s~~vqe~Aa~aL~NLA-~d~~~r~~Vv~~Ga------ip~Lv~LL----~s~~~~~k~ 554 (810)
T 3now_A 489 TVLANEGITTALCALAK-TE--SHNSQELIARVLNAVC-GLKELRGKVVQEGG------VKALLRMA----LEGTEKGKR 554 (810)
T ss_dssp HHHHHTTHHHHHHHHHT-CC--CHHHHHHHHHHHHHHH-TSHHHHHHHHHTTH------HHHHHHHH----HSSCHHHHH
T ss_pred HHHHHCcCHHHHHHHHc-CC--CHHHHHHHHHHHHHHc-CCHHHHHHHHHCCC------HHHHHHHH----ccCCHHHHH
Confidence 67889999999999887 43 6799999999999996 78878777655422 44455554 344444443
Q ss_pred HHHHHHHHh-hcCChhhHHHHHhhhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhcCCH
Q 006200 137 AADRIFNSF-CEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNL 215 (657)
Q Consensus 137 AA~~cf~ay-l~~N~~~q~~L~~tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~dn~ 215 (657)
.|..++... ...|+..- |-.+.+ ......|+.-| ..+ .++...+-|+..|.+|...++
T Consensus 555 ~Aa~AL~nL~~~~~p~~~-~~~~~~-----------------~~aIppLv~LL-~~~--~~~l~~~eAl~AL~NLa~~~d 613 (810)
T 3now_A 555 HATQALARIGITINPEVS-FSGQRS-----------------LDVIRPLLNLL-QQD--CTALENFESLMALTNLASMNE 613 (810)
T ss_dssp HHHHHHHHHHHHSCHHHH-TTTHHH-----------------HHTHHHHHHTT-STT--SCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHhcCCChhhh-hcchhh-----------------hcHHHHHHHHh-CCC--CcHHHHHHHHHHHHHHhcCCH
Confidence 444444433 34555321 100000 00112244422 322 234555568889999999888
Q ss_pred HHHHHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhhcChHHHHHhhcCCChHH
Q 006200 216 QCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLADCPNAVHCFLDSRPHLT 295 (657)
Q Consensus 216 ~~Ke~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~e~p~AV~~FL~~~s~l~ 295 (657)
..+..+.+ ++ .+..+..++. + . +. .+|-.-+.+|+--. -+++....|......++
T Consensus 614 ~~~~~Ii~---aG----------~l~~Lv~LL~--s--~--~~-----~Vq~~A~~~L~NLa-~~~~~~~~~v~~~g~l~ 668 (810)
T 3now_A 614 SVRQRIIK---EQ----------GVSKIEYYLM--E--D--HL-----YLTRAAAQCLCNLV-MSEDVIKMFEGNNDRVK 668 (810)
T ss_dssp HHHHHHHH---TT----------HHHHHHHHHH--S--C--CT-----THHHHHHHHHHHHT-TSHHHHHHHHSSSSHHH
T ss_pred HHHHHHHH---cC----------CHHHHHHHHc--C--C--CH-----HHHHHHHHHHHHHh-CChHHHHHHHhccCcHH
Confidence 77665322 11 4666666654 1 1 11 12232344444433 36778888885456799
Q ss_pred HHHHHhhCCCCchHhHHHHHHHhh
Q 006200 296 YLLELVSNPSATVCTRGLAAVLLG 319 (657)
Q Consensus 296 ~L~~~i~~~~~~~lVqGL~A~LLG 319 (657)
.|+..+... +.-+|.=+|..|+
T Consensus 669 ~Lv~LL~s~--d~~vq~~Aa~ALa 690 (810)
T 3now_A 669 FLALLCEDE--DEETATACAGALA 690 (810)
T ss_dssp HHHHGGGCS--SHHHHHHHHHHHH
T ss_pred HHHHHhcCC--CHHHHHHHHHHHH
Confidence 999988653 4567766666666
No 101
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=66.03 E-value=27 Score=36.12 Aligned_cols=16 Identities=19% Similarity=0.200 Sum_probs=6.2
Q ss_pred HHHHhHhHHHHHHHHH
Q 006200 562 LEQTNFHLEKEVKALK 577 (657)
Q Consensus 562 Le~~~~~le~e~~~lr 577 (657)
+++++..++.+++.++
T Consensus 134 ~~~~l~~~~~~l~~a~ 149 (369)
T 4dk0_A 134 VQENIKQAEIEVNTAE 149 (369)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333444444433
No 102
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=66.02 E-value=65 Score=27.78 Aligned_cols=40 Identities=15% Similarity=0.319 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 510 VETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKME 549 (657)
Q Consensus 510 ~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le 549 (657)
.+++-.++...++++..+..++..++.+...+.....+++
T Consensus 8 ~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~ 47 (117)
T 2zqm_A 8 VQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIE 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555555555555554
No 103
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=65.90 E-value=60 Score=34.60 Aligned_cols=89 Identities=12% Similarity=0.165 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-cch---------hhhhhcc-cc----HHHHHHHHHHHHHHHHHHH
Q 006200 461 LKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGA-SQS---------EQRASGA-LD----RVQVETLRKDLHEASQRLE 525 (657)
Q Consensus 461 lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~-~~~---------~~~~~~~-~~----~~q~e~L~~~L~~~~~~~e 525 (657)
||..|-+|++.+ +.++..|..+|...++... +.. ..+...+ .. ..-.+.|+++..-++..+.
T Consensus 54 Lqg~Ldk~er~~---~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~ 130 (390)
T 1deq_A 54 MKGLIDEVDQDF---TSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVI 130 (390)
T ss_pred HHHHHHHhhhhH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777444 6677777777765553221 000 0000000 00 1112334444444444433
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006200 526 -ILKEEKAQIESDSSMYRNLAAKMESDLK 553 (657)
Q Consensus 526 -~l~~e~~~~eae~~~~~~~a~~le~~l~ 553 (657)
++. .++.|+.-+++++..+++||.++.
T Consensus 131 ~q~~-~ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 131 EQVQ-RINLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred HHhH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223 456666666777777777776653
No 104
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=65.75 E-value=50 Score=36.62 Aligned_cols=41 Identities=10% Similarity=0.112 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006200 513 LRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLK 553 (657)
Q Consensus 513 L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~ 553 (657)
|+++++.++..+..--..++.|++-++++...+++||+|+.
T Consensus 115 LRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 115 LRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443332224456666777777777777776543
No 105
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=65.58 E-value=23 Score=29.47 Aligned_cols=63 Identities=16% Similarity=0.169 Sum_probs=41.6
Q ss_pred HHHHHHhHHHHHHhhhhhcCCCCCccc---cchhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 414 VDIIKSLESSIRENIVDVYSRPKSEVA---VVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELA 487 (657)
Q Consensus 414 v~f~K~n~~~I~~ai~~~~~dP~~e~~---~~~~~~~~~~~~~s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~ 487 (657)
-.-+|+-|..++..| |..... ....-+.+ .-+||..|+...++...+++.|+.++..|..+|.
T Consensus 13 R~~lk~~f~~Lr~~v------P~~~~~~k~sk~~iL~k-----A~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 13 RAHLRLSLEKLKGLV------PLGPDSSRHTTLSLLTK-----AKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHSS------CCCSSSCCCTTHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc------CCCCCCCCCCHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345788888888877 543211 11122222 2578888888888888888888888777777664
No 106
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=65.57 E-value=40 Score=27.94 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 006200 469 CSEIQKLLGRNATLAE 484 (657)
Q Consensus 469 ~~eiq~L~~~~~~L~~ 484 (657)
.++++.|-.+|..|-+
T Consensus 8 gkevEnLi~EN~eLl~ 23 (77)
T 2w83_C 8 GREVENLILENTQLLE 23 (77)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3455666666665555
No 107
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=65.35 E-value=1.2e+02 Score=33.36 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=6.5
Q ss_pred hhhhhhHHHHHHHH
Q 006200 615 GQEQSKVEKLSARL 628 (657)
Q Consensus 615 ~d~~~K~~~~k~~L 628 (657)
..+..|+.+++..+
T Consensus 178 ~~l~~ki~~l~~~~ 191 (464)
T 1m1j_B 178 DSLHKKIQKLENAI 191 (464)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555544444
No 108
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=64.43 E-value=25 Score=29.43 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=17.6
Q ss_pred HHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 549 ESDLKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 549 e~~l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
++.-.+++.++..+|.+|..|+..|..++.
T Consensus 5 ~~e~e~~~~klq~~E~rN~~Le~~v~~le~ 34 (79)
T 3cvf_A 5 AAEREETQQKVQDLETRNAELEHQLRAMER 34 (79)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333445566666777777777777777764
No 109
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=64.16 E-value=28 Score=33.60 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 457 YVKRLKAFVEKQCSEIQKLLGRNATLAEEL 486 (657)
Q Consensus 457 ~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l 486 (657)
|-.+.+++++.-+..|+.|..+|..|.+++
T Consensus 7 YK~~~q~ql~~ad~LV~~L~~En~~L~~ql 36 (190)
T 4emc_A 7 YKNSVKQQIDSADLLVANLVNENFVLSEKL 36 (190)
T ss_dssp -------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455667777788888888888888865
No 110
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=64.06 E-value=71 Score=29.64 Aligned_cols=63 Identities=19% Similarity=0.186 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHhH---HHHhHHHHHhHhHHHHHHHHHc
Q 006200 516 DLHEASQRLEILKEEK---AQIESDSSMYRNLAAKMESDLKSLS---DAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 516 ~L~~~~~~~e~l~~e~---~~~eae~~~~~~~a~~le~~l~~ls---~~~~~Le~~~~~le~e~~~lr~ 578 (657)
.+++++..-+.++..+ ...++.+.++.+.+.+.|..|.+|. -.|+++++...++..++..+++
T Consensus 53 al~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~ 121 (158)
T 3tul_A 53 ALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKE 121 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 3455555444445433 4455556666666777777777776 5788888888888888888875
No 111
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=64.04 E-value=1.5e+02 Score=31.24 Aligned_cols=224 Identities=16% Similarity=0.137 Sum_probs=115.4
Q ss_pred hhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchh
Q 006200 54 TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQ 133 (657)
Q Consensus 54 ~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~ 133 (657)
.++..+.+.|.+..|+.+.- +. ...++..+..+++.+..+|+.++..+..... .|.+..+|. ......
T Consensus 134 ~~~~~i~~~g~i~~L~~ll~-~~--~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~------i~~L~~ll~---~~~~~~ 201 (529)
T 1jdh_A 134 GAKMAVRLAGGLQKMVALLN-KT--NVKFLAITTDCLQILAYGNQESKLIILASGG------PQALVNIMR---TYTYEK 201 (529)
T ss_dssp THHHHHHHHTHHHHHHHGGG-CC--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH------HHHHHHHHH---HCCCHH
T ss_pred chHHHHHHcCCHHHHHHHHh-cC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCC------HHHHHHHHH---hCChHH
Confidence 46778889999999999877 33 5789999999999999999998888766532 233333332 122223
Q ss_pred HHhHHHHHHHHhhcCChhhHHHHH-hh----hcCCCCCCC----------------CCCCcccccCChhHHHhhhcccCC
Q 006200 134 EFLAADRIFNSFCEKNPDGQAMLT-ST----LIPQPQSMS----------------HAPLEEDVNMSFGSMLIRGLTLGE 192 (657)
Q Consensus 134 ~r~AA~~cf~ayl~~N~~~q~~L~-~t----l~p~~~~~~----------------~~~~~~~~~~s~g~~Ll~~L~s~d 192 (657)
.+.++..++..+.. +++.+..+. .. +.+.-.+.+ +.+ ...........|+.-|.
T Consensus 202 ~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~i~~L~~ll~--- 276 (529)
T 1jdh_A 202 LLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT-KQEGMEGLLGTLVQLLG--- 276 (529)
T ss_dssp HHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCT-TCSCCHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCCh-hhHHHHhHHHHHHHHHc---
Confidence 34555555554443 444442221 11 111000000 000 00000011222333331
Q ss_pred CCcchhHHHHHHHHHHHHhcCCHHHHHHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHH
Q 006200 193 SDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKL 272 (657)
Q Consensus 193 ~~~dpy~~wfAa~iL~hll~dn~~~Ke~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~L 272 (657)
..|+.....|+.+|.++-..++..+..+.... .+..+..++.-.. .+ ..++..-+..
T Consensus 277 -~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~-------------~v~~L~~ll~~~~----~~-----~~v~~~a~~~ 333 (529)
T 1jdh_A 277 -SDDINVVTCAAGILSNLTCNNYKNKMMVCQVG-------------GIEALVRTVLRAG----DR-----EDITEPAICA 333 (529)
T ss_dssp -CSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTT-------------HHHHHHHHHHHHT----TC-----HHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcC-------------ChHHHHHHHHccC----CH-----HHHHHHHHHH
Confidence 12444555577788888877777766554211 4455555543111 00 1122333444
Q ss_pred HHHHhhcChHH---HHHhhcCCChHHHHHHHhhCCCCchHhHHHHHHHhh
Q 006200 273 LVTWLADCPNA---VHCFLDSRPHLTYLLELVSNPSATVCTRGLAAVLLG 319 (657)
Q Consensus 273 L~~WL~e~p~A---V~~FL~~~s~l~~L~~~i~~~~~~~lVqGL~A~LLG 319 (657)
|.--..++|.. -..+...+ .++.|+..+.+.. +.-|+.-++..|+
T Consensus 334 L~nl~~~~~~~~~~~~~i~~~~-~i~~L~~lL~~~~-~~~v~~~a~~~l~ 381 (529)
T 1jdh_A 334 LRHLTSRHQEAEMAQNAVRLHY-GLPVVVKLLHPPS-HWPLIKATVGLIR 381 (529)
T ss_dssp HHHHTSSSTTHHHHHHHHHHTT-CHHHHHHTTSTTC-CHHHHHHHHHHHH
T ss_pred HHHHHcCCchHHHHHHHHHHcC-ChhHHHHHhcccc-chHHHHHHHHHHH
Confidence 44444554442 33555555 4888988886543 3345555556666
No 112
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=63.61 E-value=8.1 Score=29.84 Aligned_cols=34 Identities=24% Similarity=0.450 Sum_probs=24.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 506 DRVQVETLRKDLHEASQRLEILKEEKAQIESDSS 539 (657)
Q Consensus 506 ~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~ 539 (657)
...+++.|++++++++++++.|..+...+++++.
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567788888888888877777777766666554
No 113
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=63.10 E-value=83 Score=33.90 Aligned_cols=22 Identities=5% Similarity=0.009 Sum_probs=11.8
Q ss_pred HHHHHHHhHhHHHHHhhhhhhh
Q 006200 599 AQKESEAELNDLLVCLGQEQSK 620 (657)
Q Consensus 599 ~~~~~~~e~~dLl~ll~d~~~K 620 (657)
+...++++++++-..+.+...|
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~ 471 (487)
T 3oja_A 450 ENARLKKLNGEADLALASANAT 471 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhhhhhHhcccH
Confidence 4455666666665555444333
No 114
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=62.89 E-value=33 Score=29.88 Aligned_cols=67 Identities=25% Similarity=0.332 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH------------HhHHHHhHHHHHhHhHHHHHH
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLK------------SLSDAYNSLEQTNFHLEKEVK 574 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~------------~ls~~~~~Le~~~~~le~e~~ 574 (657)
..++..|+.+++.+....+.|+.++..+|.+++. -.++.+.. =++.++.+.+.++..|.+|+.
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~-----~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~e 85 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQLER-----RALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECE 85 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----SSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHH
Confidence 4466777777766666666666555555555543 00111110 022455555666666666666
Q ss_pred HHHc
Q 006200 575 ALKS 578 (657)
Q Consensus 575 ~lr~ 578 (657)
.||+
T Consensus 86 rLr~ 89 (100)
T 1go4_E 86 RLRG 89 (100)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6664
No 115
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=61.46 E-value=10 Score=25.57 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=16.0
Q ss_pred HhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 554 SLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 554 ~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
+|...+.+-|++|+++++|+..+.
T Consensus 5 qlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 334445556678888888887775
No 116
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=61.31 E-value=31 Score=29.00 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 514 RKDLHEASQRLEILKEEKAQIESDSSM 540 (657)
Q Consensus 514 ~~~L~~~~~~~e~l~~e~~~~eae~~~ 540 (657)
++.|+.+-..++.|+.+++.+++++++
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445555555666666666666666654
No 117
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=61.28 E-value=70 Score=34.47 Aligned_cols=16 Identities=6% Similarity=0.111 Sum_probs=13.3
Q ss_pred HHHHHHhHHHHHHhhh
Q 006200 414 VDIIKSLESSIRENIV 429 (657)
Q Consensus 414 v~f~K~n~~~I~~ai~ 429 (657)
++|+++|-..|++++.
T Consensus 4 ~~~~r~~~~~~~~~~~ 19 (421)
T 1ses_A 4 LKRLRQEPEVFHRAIR 19 (421)
T ss_dssp HHHHHHCHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHH
Confidence 5678889999998885
No 118
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=61.24 E-value=68 Score=35.85 Aligned_cols=148 Identities=16% Similarity=0.082 Sum_probs=81.0
Q ss_pred chHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchhHHhHHHHHHHHhhcCChhhHHHHHh
Q 006200 79 PVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAADRIFNSFCEKNPDGQAMLTS 158 (657)
Q Consensus 79 p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~~r~AA~~cf~ayl~~N~~~q~~L~~ 158 (657)
..-||+.||+++|.+.. +. ..+.+...+.-+|...++..|-+|..|+-..+..+|+.-.
T Consensus 120 n~~vr~lAL~~L~~i~~--~~---------------~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~---- 178 (618)
T 1w63_A 120 TQFVQGLALCTLGCMGS--SE---------------MCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME---- 178 (618)
T ss_dssp SSHHHHHHHHHHHHHCC--HH---------------HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG----
T ss_pred CHhHHHHHHHHHHhcCC--HH---------------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH----
Confidence 45678888888887652 11 1122333344455667788887777777767777765332
Q ss_pred hhcCCCCCCCCCCCcccccCChhHHHhhhcccCCCCcchhHHHHHHHHHHHHhcCCHHHHHHHhccccccCCCCCCCCcc
Q 006200 159 TLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEP 238 (657)
Q Consensus 159 tl~p~~~~~~~~~~~~~~~~s~g~~Ll~~L~s~d~~~dpy~~wfAa~iL~hll~dn~~~Ke~al~V~l~~~~~~~~~~e~ 238 (657)
.+. ..|...| + ..||....-|..+|..+...++....... .
T Consensus 179 ~~~--------------------~~l~~lL-~---D~d~~V~~~Al~~L~~i~~~~~~~~~~~~---------------~ 219 (618)
T 1w63_A 179 MFL--------------------PATKNLL-N---EKNHGVLHTSVVLLTEMCERSPDMLAHFR---------------K 219 (618)
T ss_dssp GGG--------------------GGTTTST-T---CCCHHHHHHHHHHHHHHCCSHHHHHHHHH---------------T
T ss_pred HHH--------------------HHHHHHh-C---CCCHhHHHHHHHHHHHHHHhChHHHHHHH---------------H
Confidence 111 1112222 2 23555555555667766666665322111 1
Q ss_pred hHHHHHHHHH-HhhccccC---CCCCcchhHHHHHHHHHHHHhhcChHHHHH
Q 006200 239 LMHRMVRYLA-LASSMKTK---DGTGKAGYIQLIILKLLVTWLADCPNAVHC 286 (657)
Q Consensus 239 ll~~i~~~l~-~a~~~~~~---d~ri~~~~~~~gyL~LL~~WL~e~p~AV~~ 286 (657)
+++.+..+|. +....... -..+..+|.|+.++.+|......+|.....
T Consensus 220 ~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~ 271 (618)
T 1w63_A 220 LVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEA 271 (618)
T ss_dssp THHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHH
Confidence 4445555544 11111111 112456899999999999888888875544
No 119
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=60.52 E-value=2.1e+02 Score=31.71 Aligned_cols=91 Identities=7% Similarity=0.076 Sum_probs=67.0
Q ss_pred hhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchh
Q 006200 54 TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQ 133 (657)
Q Consensus 54 ~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~ 133 (657)
.+...+.+.|.+..|+++.- +. ...|+..|+.+++.+..++..++..+....+ .|.++ .+|...+..
T Consensus 89 ~~~~~i~~~g~i~~Lv~lL~-~~--~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~------i~~Lv----~lL~~~~~~ 155 (644)
T 2z6h_A 89 EGLLAIFKSGGIPALVKMLG-SP--VDSVLFYAITTLHNLLLHQEGAKMAVRLAGG------LQKMV----ALLNKTNVK 155 (644)
T ss_dssp HHHHHHHTTTHHHHHHHHTT-CS--SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTH------HHHHH----HGGGCCCHH
T ss_pred hhHHHHHHcCCHHHHHHHHh-CC--CHHHHHHHHHHHHHHHhCcchhHHHHHHCCC------hHHHH----HHHCcCCHH
Confidence 47888899999999999866 33 5799999999999999987766665543211 23332 334455667
Q ss_pred HHhHHHHHHHHhhcCChhhHHHHH
Q 006200 134 EFLAADRIFNSFCEKNPDGQAMLT 157 (657)
Q Consensus 134 ~r~AA~~cf~ayl~~N~~~q~~L~ 157 (657)
.+.+++.|+.....+|++.+..+.
T Consensus 156 ~~~~a~~~L~~La~~~~~~~~~i~ 179 (644)
T 2z6h_A 156 FLAITTDCLQILAYGNQESKLIIL 179 (644)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHH
Confidence 778889999999988988886554
No 120
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=60.35 E-value=1e+02 Score=28.10 Aligned_cols=30 Identities=27% Similarity=0.180 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 457 YVKRLKAFVEKQCSEIQKLLGRNATLAEEL 486 (657)
Q Consensus 457 ~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l 486 (657)
-|++|+.-=--..++|..|++++..+++.+
T Consensus 47 KVDQlqKRn~~HQKEi~~Lrae~~~~QRn~ 76 (167)
T 4gkw_A 47 KVDQLQKRNVAHQKEIGKLRAELGTAQRNL 76 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhccHHHHHHHHHHHHHHHHHHhH
Confidence 445454444444455656666655555544
No 121
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=60.35 E-value=1.4e+02 Score=32.55 Aligned_cols=28 Identities=11% Similarity=0.221 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 006200 461 LKAFVEKQCSEIQKLLGRNATLAEELAKIGG 491 (657)
Q Consensus 461 lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~ 491 (657)
|+..|-+|++.+ +.++..|+..|...++
T Consensus 52 LqglL~kqerdv---~~rI~kLkn~L~~~s~ 79 (491)
T 1m1j_A 52 MQGIIDDTDQNY---SQRIDNIRQQLADSQN 79 (491)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhhhhH---HHHHHHHHHHHHHHHh
Confidence 778888888777 6677777777766653
No 122
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=59.30 E-value=29 Score=28.49 Aligned_cols=30 Identities=17% Similarity=0.176 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 457 YVKRLKAFVEKQCSEIQKLLGRNATLAEEL 486 (657)
Q Consensus 457 ~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l 486 (657)
-|..|+..+++++++|+....++..|..+|
T Consensus 20 ti~eLq~~L~~K~eELr~kd~~I~eLEk~L 49 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDALIDELELEL 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377899999999999877666666555543
No 123
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=59.28 E-value=37 Score=35.08 Aligned_cols=26 Identities=0% Similarity=-0.051 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 462 KAFVEKQCSEIQKLLGRNATLAEELA 487 (657)
Q Consensus 462 k~~i~~Q~~eiq~L~~~~~~L~~~l~ 487 (657)
+..++....+++.++.++...+.++.
T Consensus 69 ~~~l~~~~a~l~~~~a~l~~a~~~~~ 94 (369)
T 4dk0_A 69 INTLNTRKAALASYQAQLVARKTAYD 94 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555665555555543
No 124
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=58.33 E-value=61 Score=29.70 Aligned_cols=37 Identities=16% Similarity=0.244 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRN 543 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~ 543 (657)
..++..|..+|.+.++.....+.++.+++.|++++..
T Consensus 45 ~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTa 81 (135)
T 2e7s_A 45 DDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 81 (135)
T ss_dssp HHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777666666667777777777776543
No 125
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=58.08 E-value=49 Score=25.23 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006200 511 ETLRKDLHEASQRLEILKEE 530 (657)
Q Consensus 511 e~L~~~L~~~~~~~e~l~~e 530 (657)
++|-+|.+.+++++.+|+.|
T Consensus 6 dQL~~QVe~Lk~ENshLrrE 25 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQE 25 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHH
Confidence 45555555555544444433
No 126
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=58.04 E-value=19 Score=28.27 Aligned_cols=34 Identities=26% Similarity=0.294 Sum_probs=18.7
Q ss_pred HHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 544 LAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 544 ~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
.+..+|..+..|+.....|..++..|..|+..|+
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555556555554
No 127
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=57.08 E-value=1.7e+02 Score=31.42 Aligned_cols=30 Identities=13% Similarity=0.289 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 457 YVKRLKAFVEKQCSEIQKLLGRNATLAEEL 486 (657)
Q Consensus 457 ~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l 486 (657)
.+..++.-|.++=++|+++..+++++++..
T Consensus 28 ~L~k~e~~V~~~l~~LE~~l~elsn~ts~v 57 (409)
T 1m1j_C 28 FFNKYRLTTDGELLEIEGLLQQATNSTGSI 57 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666666666654
No 128
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=56.99 E-value=86 Score=26.92 Aligned_cols=18 Identities=0% Similarity=0.038 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006200 467 KQCSEIQKLLGRNATLAE 484 (657)
Q Consensus 467 ~Q~~eiq~L~~~~~~L~~ 484 (657)
.-..++++++.++..|..
T Consensus 7 ~~~~~~~~~~~~l~~L~~ 24 (112)
T 1l8d_A 7 ELETKKTTIEEERNEITQ 24 (112)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 129
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=56.34 E-value=1.1e+02 Score=27.19 Aligned_cols=16 Identities=6% Similarity=-0.168 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 006200 534 IESDSSMYRNLAAKME 549 (657)
Q Consensus 534 ~eae~~~~~~~a~~le 549 (657)
.|..+.++++.++..+
T Consensus 57 sE~~L~~Lqq~fsq~q 72 (112)
T 1x79_B 57 SEILLEELQQGLSQAK 72 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333444444333
No 130
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=55.74 E-value=30 Score=28.58 Aligned_cols=37 Identities=19% Similarity=0.407 Sum_probs=31.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006200 454 DKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIG 490 (657)
Q Consensus 454 s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~ 490 (657)
.-+||..|+..+++...++..|+.++..|..++...+
T Consensus 45 Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 45 ATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3679999999999999999999999999888876554
No 131
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=55.58 E-value=69 Score=26.27 Aligned_cols=33 Identities=18% Similarity=0.349 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 513 LRKDLHEASQRLEILKEEKAQIESDSSMYRNLA 545 (657)
Q Consensus 513 L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a 545 (657)
++.+++...+.++.|=+-|..++.|++.|+.+.
T Consensus 24 ~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLL 56 (74)
T 2xv5_A 24 MRARMQQQLDEYQELLDIKLALDMEIHAYRKLL 56 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444445555666666655553
No 132
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=54.69 E-value=1e+02 Score=26.39 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=15.8
Q ss_pred HHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 545 AAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 545 a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
.+.....+..+.+...+++.+.......+..|+
T Consensus 62 yn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 62 YSEFKRQQLELDDELKSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444455555555555555554444
No 133
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=54.46 E-value=25 Score=29.57 Aligned_cols=27 Identities=11% Similarity=-0.038 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhHhHHHHHhhhhhhhH
Q 006200 595 AREEAQKESEAELNDLLVCLGQEQSKV 621 (657)
Q Consensus 595 ~~~e~~~~~~~e~~dLl~ll~d~~~K~ 621 (657)
.....+.+++.+++.++.=|..++++.
T Consensus 60 ~l~~~l~~~e~eLe~~~erWeeLe~~~ 86 (89)
T 2lw1_A 60 KVLADMAAAEQELEQAFERWEYLEALK 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344456778888888888887776543
No 134
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=54.21 E-value=29 Score=31.88 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=6.6
Q ss_pred HHHHHhHhHHHHHhhhhhhhHHHHH
Q 006200 601 KESEAELNDLLVCLGQEQSKVEKLS 625 (657)
Q Consensus 601 ~~~~~e~~dLl~ll~d~~~K~~~~k 625 (657)
..++..+.|--.++..+...+..+|
T Consensus 106 ~~L~~ql~e~e~ll~~lq~QL~~LK 130 (135)
T 2e7s_A 106 KRLTEQLREKDMLLDTLTLQLKNLK 130 (135)
T ss_dssp HHHHHTTTHHHHCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444544444444444
No 135
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=54.15 E-value=1.6 Score=43.63 Aligned_cols=76 Identities=16% Similarity=0.257 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcCCCCCCcccHHHHHHHHHHHHHHHHHHhHhH-----------
Q 006200 541 YRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSGGSSVSSPDVEAIKAEAREEAQKESEAELND----------- 609 (657)
Q Consensus 541 ~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~~~~~~~~~l~~~~~~~~~e~~~~~~~e~~d----------- 609 (657)
+=.|+.+++.++..++++|..+|..+..|..+++++-+ .++++|-
T Consensus 155 LFewA~~L~q~i~~ln~k~~~~E~si~~L~~qLeElv~------------------------~k~~~dqLi~~RD~~tR~ 210 (246)
T 1z56_A 155 LFEMADKLYKDICCVNDSYRNIKESDSSNRNRVEQLAR------------------------ERELLDKLLETRDERTRA 210 (246)
T ss_dssp ----CTTSGGGTTHHHHHHHHTTTTTTHHHHHHHHTTT------------------------THHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHhhcchhHH
Confidence 44567888889999999999999999999998887753 1122332
Q ss_pred -HHHHhhhhhhhHHHHHHHHHHcCchhhhhhc
Q 006200 610 -LLVCLGQEQSKVEKLSARLLELGEDVEKLLE 640 (657)
Q Consensus 610 -Ll~ll~d~~~K~~~~k~~L~~lg~~v~~~~~ 640 (657)
+.-||.+--.|++...+.|+..+.+++++.-
T Consensus 211 ~fv~LLNEKK~KIR~qqrlL~sa~i~l~~~~~ 242 (246)
T 1z56_A 211 MMVTLLNEKKKKIRELHEILRQNNIKLSDDDV 242 (246)
T ss_dssp HHHHHHHHHHHHHHHGGGTTTTTCC-------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 2345555555555555577888888887643
No 136
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=54.05 E-value=22 Score=26.09 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=22.4
Q ss_pred HHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 546 AKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 546 ~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
+.+|...+.+....++||..+.-|+.|+.-||+
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 456666666666667777777777777777764
No 137
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=53.61 E-value=95 Score=25.70 Aligned_cols=6 Identities=50% Similarity=0.623 Sum_probs=2.5
Q ss_pred HHHHHH
Q 006200 508 VQVETL 513 (657)
Q Consensus 508 ~q~e~L 513 (657)
++++.|
T Consensus 9 kevEnL 14 (77)
T 2w83_C 9 REVENL 14 (77)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344444
No 138
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=52.97 E-value=16 Score=25.42 Aligned_cols=26 Identities=15% Similarity=0.425 Sum_probs=20.9
Q ss_pred HHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 553 KSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 553 ~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
++|.+++++|-.+++.|+.|+..+|+
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 46677788888888889999888874
No 139
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=52.55 E-value=73 Score=35.28 Aligned_cols=32 Identities=9% Similarity=0.100 Sum_probs=20.6
Q ss_pred HHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 546 AKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 546 ~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
+.+...++.+.+.+..|+.+...+++++..+-
T Consensus 119 ~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l 150 (501)
T 1wle_A 119 QSLRARGREIRKQLTLLYPKEAQLEEQFYLRA 150 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666677777777777777765554
No 140
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=52.08 E-value=13 Score=26.37 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=20.4
Q ss_pred HHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 552 LKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 552 l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
.++|.++++.|..++..|+.|+..||+
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 356667777888888888888888774
No 141
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=51.23 E-value=85 Score=34.23 Aligned_cols=16 Identities=6% Similarity=0.474 Sum_probs=13.3
Q ss_pred HHHHHHhHHHHHHhhh
Q 006200 414 VDIIKSLESSIRENIV 429 (657)
Q Consensus 414 v~f~K~n~~~I~~ai~ 429 (657)
++|+++|-..|++++.
T Consensus 4 ~~~~r~n~~~~~~~~~ 19 (455)
T 2dq0_A 4 IKLIRENPELVKNDLI 19 (455)
T ss_dssp HHHHHHCHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHH
Confidence 5788899999998885
No 142
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=51.03 E-value=1.1e+02 Score=30.13 Aligned_cols=13 Identities=23% Similarity=0.312 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHH
Q 006200 472 IQKLLGRNATLAE 484 (657)
Q Consensus 472 iq~L~~~~~~L~~ 484 (657)
++.++.++..|+.
T Consensus 134 ~~~~~~~~~~L~~ 146 (213)
T 1ik9_A 134 IAENQAKNEHLQK 146 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555666555555
No 143
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=51.01 E-value=2.3e+02 Score=31.27 Aligned_cols=33 Identities=24% Similarity=0.246 Sum_probs=14.5
Q ss_pred HHHHHHhHhHHHHHhhhhhhhHHHHHHHHHHcC
Q 006200 600 QKESEAELNDLLVCLGQEQSKVEKLSARLLELG 632 (657)
Q Consensus 600 ~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~lg 632 (657)
+.+-++++-|--.=|..-+....+|++.|.+++
T Consensus 75 lakY~~~~AeY~~kl~aYe~~~~~~~k~lae~e 107 (497)
T 3iox_A 75 LAKYQKDLADYPVKLKAYEDEQTSIKAALAELE 107 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444433333333444444445555555544
No 144
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=50.64 E-value=22 Score=30.82 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEK 531 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~ 531 (657)
...+...++.|+++..-+++++-|.
T Consensus 37 k~~i~~ie~~l~EA~ell~qMelE~ 61 (102)
T 1vcs_A 37 KQMVANVEKQLEEARELLEQMDLEV 61 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888887777666554
No 145
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=50.63 E-value=1.3e+02 Score=26.55 Aligned_cols=53 Identities=23% Similarity=0.369 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHH
Q 006200 509 QVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQ 564 (657)
Q Consensus 509 q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~ 564 (657)
+++.++.++...++.. ..+...++.|+..++..-..+...+..|..+...||+
T Consensus 18 E~e~~k~K~~~~~~e~---~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER 70 (111)
T 2v66_B 18 EVEALKEKLEHQYAQS---YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER 70 (111)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 3455555555444321 2223334444444444444444444443333333443
No 146
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=50.56 E-value=1.5e+02 Score=27.17 Aligned_cols=10 Identities=30% Similarity=0.262 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 006200 475 LLGRNATLAE 484 (657)
Q Consensus 475 L~~~~~~L~~ 484 (657)
++.+|..|..
T Consensus 27 l~~eN~~Lk~ 36 (155)
T 2oto_A 27 LRHENKDLKA 36 (155)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 147
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=50.48 E-value=16 Score=25.61 Aligned_cols=27 Identities=37% Similarity=0.593 Sum_probs=21.9
Q ss_pred HHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 552 LKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 552 l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
.++|.+++++|-.+++.|+.|+..|++
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 456778888888888999999888874
No 148
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=50.23 E-value=62 Score=24.77 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 508 VQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRN 543 (657)
Q Consensus 508 ~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~ 543 (657)
..+..|++++..+.++++.|...+.....++..+++
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lke 44 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALRE 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666665555555554444444333
No 149
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=50.03 E-value=1.4e+02 Score=26.66 Aligned_cols=14 Identities=21% Similarity=0.254 Sum_probs=7.4
Q ss_pred HhHhHHHHHHHHHc
Q 006200 565 TNFHLEKEVKALKS 578 (657)
Q Consensus 565 ~~~~le~e~~~lr~ 578 (657)
++..|..++..++.
T Consensus 69 e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 69 DCEFLRAELDELRR 82 (120)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 34445556665654
No 150
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=49.98 E-value=1.5e+02 Score=26.97 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhH
Q 006200 515 KDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLS 556 (657)
Q Consensus 515 ~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls 556 (657)
.+..+.+++.-.-..|+.+++||....+....+.+..|+.-+
T Consensus 46 gKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~ 87 (167)
T 4gkw_A 46 GKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNS 87 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Confidence 344444555444455667777777777777777776665544
No 151
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=49.92 E-value=30 Score=27.42 Aligned_cols=30 Identities=27% Similarity=0.387 Sum_probs=12.1
Q ss_pred HHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 548 MESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 548 le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
++..+..|......|+.++..|+.|+..|+
T Consensus 28 le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 28 LTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444444443
No 152
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=49.90 E-value=3.4e+02 Score=31.05 Aligned_cols=91 Identities=7% Similarity=0.078 Sum_probs=66.0
Q ss_pred hhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchh
Q 006200 54 TNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQ 133 (657)
Q Consensus 54 ~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~ 133 (657)
.|...+.+.|.+..|+.+.- +. ...|+..|+.++..+..++..++..+....+ .|.++ .+|...+..
T Consensus 225 ~~~~~i~~~g~I~~Lv~lL~-~~--~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~------v~~Lv----~lL~~~~~~ 291 (780)
T 2z6g_A 225 EGLLAIFKSGGIPALVNMLG-SP--VDSVLFHAITTLHNLLLHQEGAKMAVRLAGG------LQKMV----ALLNKTNVK 291 (780)
T ss_dssp HHHHHHHHTTHHHHHHHHTT-CS--CHHHHHHHHHHHHHHHHHSTTHHHHHHHTTH------HHHHH----HGGGCCCHH
T ss_pred hhHHHHHHcCCHHHHHHHHc-CC--CHHHHHHHHHHHHHHhCCChhhHHHHHHcCC------HHHHH----HHHhcCCHH
Confidence 45667888999999999876 33 5789999999999999988776665543211 22222 333455667
Q ss_pred HHhHHHHHHHHhhcCChhhHHHHH
Q 006200 134 EFLAADRIFNSFCEKNPDGQAMLT 157 (657)
Q Consensus 134 ~r~AA~~cf~ayl~~N~~~q~~L~ 157 (657)
.+..|+.|+..+..+|++.+..+.
T Consensus 292 v~~~a~~aL~~La~~~~e~~~~i~ 315 (780)
T 2z6g_A 292 FLAITTDCLQILAYGNQESKLIIL 315 (780)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHH
Confidence 777888899988889988886543
No 153
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=49.74 E-value=19 Score=25.16 Aligned_cols=27 Identities=11% Similarity=0.256 Sum_probs=21.4
Q ss_pred HHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 552 LKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 552 l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
.++|.+++++|-.+++.|+.|+..||+
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 456777888888888889999888874
No 154
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=49.45 E-value=16 Score=25.52 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=20.1
Q ss_pred HHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 553 KSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 553 ~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
++|.+++++|-.++..|+.|+..||+
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45667777888888888888888874
No 155
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=49.07 E-value=2e+02 Score=30.62 Aligned_cols=7 Identities=29% Similarity=0.819 Sum_probs=3.4
Q ss_pred HHHHH-HH
Q 006200 411 KHFVD-II 417 (657)
Q Consensus 411 ~~Fv~-f~ 417 (657)
+.|++ |+
T Consensus 291 ~~Fi~~~l 298 (471)
T 3mq9_A 291 KEFLENYL 298 (471)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 34554 44
No 156
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=48.69 E-value=17 Score=25.42 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=21.8
Q ss_pred HHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 552 LKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 552 l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
.++|.+++++|-.+++.++.|+..+|+
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 356777888888889999999988875
No 157
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=48.54 E-value=1.5e+02 Score=26.48 Aligned_cols=22 Identities=9% Similarity=0.247 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHH
Q 006200 533 QIESDSSMYRNLAAKMESDLKS 554 (657)
Q Consensus 533 ~~eae~~~~~~~a~~le~~l~~ 554 (657)
++++++..-.++.-.|...|.+
T Consensus 43 ~~eaQAaTCNqTV~tL~~SL~~ 64 (121)
T 3mq7_A 43 DVEAQAATANHTVMALMASLDA 64 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 158
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=48.51 E-value=43 Score=32.99 Aligned_cols=45 Identities=9% Similarity=0.158 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006200 508 VQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDL 552 (657)
Q Consensus 508 ~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l 552 (657)
.+++.|..++++++++++.++++..++.|+.++||+...+-..+.
T Consensus 59 ~e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~ 103 (213)
T 4ani_A 59 EELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAA 103 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888999999999999999999999999988777665443
No 159
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=48.12 E-value=21 Score=25.00 Aligned_cols=27 Identities=37% Similarity=0.460 Sum_probs=21.1
Q ss_pred HHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 552 LKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 552 l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
.++|.+++++|-+++..|+.|+..||+
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 346677788888888888888888874
No 160
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=48.02 E-value=1.1e+02 Score=24.90 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=9.5
Q ss_pred hHHHhHHHHhHHHHHhHhHHHHH
Q 006200 551 DLKSLSDAYNSLEQTNFHLEKEV 573 (657)
Q Consensus 551 ~l~~ls~~~~~Le~~~~~le~e~ 573 (657)
+...|++.+-++.-+|.-|.+.+
T Consensus 47 d~ErLNDEiislNIENNlL~~rl 69 (75)
T 3a7o_A 47 NTERLNDELISGTIENNVLQQKL 69 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHhhHHHHHhHHHHHHHHHHH
Confidence 33344444444444444444433
No 161
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=47.98 E-value=1.1e+02 Score=25.00 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006200 457 YVKRLKAFVEKQCSEIQKLLGR 478 (657)
Q Consensus 457 ~v~~lk~~i~~Q~~eiq~L~~~ 478 (657)
.+..||+.++.++.+|..|+..
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~ 40 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEV 40 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777665554
No 162
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=47.85 E-value=1.3e+02 Score=33.80 Aligned_cols=93 Identities=20% Similarity=0.158 Sum_probs=61.5
Q ss_pred hhHHHHHhhcHHHHHHHHHhccCC-----CchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhc
Q 006200 54 TNKTVLVQKKALDNLLMLAVESQW-----APVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILR 128 (657)
Q Consensus 54 ~nQ~~l~q~glL~~ll~La~~s~~-----~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~ 128 (657)
.||..+ ..|.+..|+++...+.. ....+.+.|+.|++.++.+|+.+...+..... .|.++.|| +
T Consensus 387 ~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~------I~~Lv~LL----~ 455 (584)
T 3l6x_A 387 RNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQG------IEKLVLIN----K 455 (584)
T ss_dssp SCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH------HHHHHHHH----T
T ss_pred hHHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCC------hHHHHHHH----h
Confidence 477777 67888999998764321 23688999999999999999988876654322 33333333 3
Q ss_pred cC--chhHHhHHHHHHHHhhcCChhhHHHHHh
Q 006200 129 TS--SMQEFLAADRIFNSFCEKNPDGQAMLTS 158 (657)
Q Consensus 129 ~~--~~~~r~AA~~cf~ayl~~N~~~q~~L~~ 158 (657)
.. +....-+|+.++..... |.+.|..+.+
T Consensus 456 s~~~~~~v~k~Aa~vL~nl~~-~~elr~~~kk 486 (584)
T 3l6x_A 456 SGNRSEKEVRAAALVLQTIWG-YKELRKPLEK 486 (584)
T ss_dssp CSSSCHHHHHHHHHHHHHHHT-SHHHHHHHHT
T ss_pred CCCCChHHHHHHHHHHHHHHc-CHHHHHHHHH
Confidence 33 34445566666666554 7777765554
No 163
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=47.47 E-value=63 Score=24.82 Aligned_cols=7 Identities=14% Similarity=0.397 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 006200 571 KEVKALK 577 (657)
Q Consensus 571 ~e~~~lr 577 (657)
.++..+|
T Consensus 25 sdV~al~ 31 (52)
T 1jcd_A 25 NDANAAR 31 (52)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 164
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=47.37 E-value=1.5e+02 Score=26.24 Aligned_cols=35 Identities=14% Similarity=0.044 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHH
Q 006200 531 KAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQT 565 (657)
Q Consensus 531 ~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~ 565 (657)
+.....++..+...+..-|..|..|..++.+.-..
T Consensus 40 ~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~ 74 (112)
T 1x79_B 40 SEDSSHQISALVLRAQASEILLEELQQGLSQAKRD 74 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666777777777777777777666665443
No 165
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=47.19 E-value=61 Score=35.35 Aligned_cols=33 Identities=12% Similarity=0.133 Sum_probs=22.5
Q ss_pred HHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 546 AKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 546 ~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
.++-...+.++..+..|+.+...+++++..+--
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (455)
T 2dq0_A 72 DELLAKSREIVKRIGELENEVEELKKKIDYYLW 104 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666777777777777777777766654
No 166
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=47.13 E-value=52 Score=25.19 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=14.4
Q ss_pred HHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 552 LKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 552 l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
+..+..++..|.+.|.+|.+-++++|+
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L~~AR~ 37 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETLKEARQ 37 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555666666665555553
No 167
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=46.73 E-value=72 Score=35.21 Aligned_cols=32 Identities=9% Similarity=0.194 Sum_probs=20.1
Q ss_pred HHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 546 AKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 546 ~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
+.+-.+++.+...+..||.+...+++++..+-
T Consensus 74 ~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l 105 (485)
T 3qne_A 74 KDLIAEKEKLSNEKKEIIEKEAEADKNLRSKI 105 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666667777777777777765544
No 168
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=45.99 E-value=24 Score=24.56 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=20.4
Q ss_pred HHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 553 KSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 553 ~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
++|.+++++|-.+++.++.|+..+++
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 46667778888888888888888874
No 169
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=45.93 E-value=1.2e+02 Score=24.77 Aligned_cols=14 Identities=14% Similarity=0.228 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 006200 527 LKEEKAQIESDSSM 540 (657)
Q Consensus 527 l~~e~~~~eae~~~ 540 (657)
|+.+...++..++.
T Consensus 19 Le~~v~~le~~Le~ 32 (72)
T 3cve_A 19 LEGQLSEMEQRLEK 32 (72)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 170
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=45.87 E-value=1.4e+02 Score=25.40 Aligned_cols=28 Identities=11% Similarity=0.138 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQI 534 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~ 534 (657)
...+....+.++++..-+++++-|.+.+
T Consensus 33 k~~i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 33 NTTLKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445556666666666555554444433
No 171
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=45.47 E-value=47 Score=37.35 Aligned_cols=65 Identities=23% Similarity=0.340 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 514 RKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 514 ~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
.++..+...++.+++.+.++++.++.....+|..|+..++.+...-..|++....++++...|+.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~ 398 (575)
T 2i1j_A 334 EKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEE 398 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666677778888888888888888888887777777666676666666666655554
No 172
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=44.97 E-value=2e+02 Score=26.89 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 508 VQVETLRKDLHEASQRLEILKEEKAQIESDSSMY 541 (657)
Q Consensus 508 ~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~ 541 (657)
.++..|..+|.+.++.....+.++.+++.|++++
T Consensus 58 ~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeL 91 (154)
T 2ocy_A 58 DEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 91 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445444444444444444444444443
No 173
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=44.83 E-value=2e+02 Score=26.87 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHhHhHHHH
Q 006200 595 AREEAQKESEAELNDLLV 612 (657)
Q Consensus 595 ~~~e~~~~~~~e~~dLl~ 612 (657)
..+-....+++++|+|=-
T Consensus 95 ~AERsv~kLEk~id~lEd 112 (155)
T 2efr_A 95 FAERSVTKLEKSIDDLED 112 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334445555555443
No 174
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=44.28 E-value=26 Score=24.87 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=20.0
Q ss_pred HHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 552 LKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 552 l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
.++|.+++++|-.++..|+.|+..||+
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456667777777788888888887774
No 175
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=43.83 E-value=2.8e+02 Score=30.61 Aligned_cols=65 Identities=8% Similarity=0.061 Sum_probs=35.2
Q ss_pred cccccHHHHHHHHHhHHHHHHhhhhhcCCCCCccccchhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 406 SSMFDKHFVDIIKSLESSIRENIVDVYSRPKSEVAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEE 485 (657)
Q Consensus 406 ~v~FD~~Fv~f~K~n~~~I~~ai~~~~~dP~~e~~~~~~~~~~~~~~~s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~ 485 (657)
...+| ++|+++|-..|++++.. +.-+.... .-+-+-.|-+.-++-..++++|+++...+..+
T Consensus 38 ~pmlD---~~~ir~n~~~v~~~l~~--R~~~~~~~-------------~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~ 99 (501)
T 1wle_A 38 LPLLD---MESLCAYPEDAARALDL--RKGELRSK-------------DLPGIISTWQELRQLREQIRSLEEEKEAVTEA 99 (501)
T ss_dssp CCCCC---HHHHHHSHHHHHHHHHH--HTCSCCGG-------------GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccC---HHHHHhCHHHHHHHHHH--cCCCcchh-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667 56678899998888852 11000000 01122234455555566666666666666666
Q ss_pred HHh
Q 006200 486 LAK 488 (657)
Q Consensus 486 l~~ 488 (657)
+.+
T Consensus 100 i~~ 102 (501)
T 1wle_A 100 VRA 102 (501)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 176
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=43.75 E-value=73 Score=29.51 Aligned_cols=22 Identities=5% Similarity=0.057 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHhH
Q 006200 535 ESDSSMYRNLAAKMESDLKSLS 556 (657)
Q Consensus 535 eae~~~~~~~a~~le~~l~~ls 556 (657)
++++..++..+..++.++.+|.
T Consensus 86 ea~la~l~~~~~~LeAE~aKLe 107 (146)
T 2xnx_M 86 KLELDQLSSEKEQLTIEKAKLE 107 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 3333333333333443333333
No 177
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=43.55 E-value=73 Score=25.13 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 510 VETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLA 545 (657)
Q Consensus 510 ~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a 545 (657)
.+.|..+.+++...+..|+.+...++.|+..+++..
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555666555555443
No 178
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=43.31 E-value=74 Score=26.74 Aligned_cols=67 Identities=24% Similarity=0.259 Sum_probs=42.6
Q ss_pred HHHHHHHhHHHHHHhhhhhcCCCCCccc---cchhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006200 413 FVDIIKSLESSIRENIVDVYSRPKSEVA---VVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKI 489 (657)
Q Consensus 413 Fv~f~K~n~~~I~~ai~~~~~dP~~e~~---~~~~~~~~~~~~~s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~ 489 (657)
-.+-+++-|..++..| |..... ....-+.. .-+||..|+........++..|+.++..|..++.+.
T Consensus 17 RR~~ln~~f~~Lr~~v------P~~~~~~K~sK~~iL~~-----A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 17 RRNELKRSFFALRDQI------PELENNEKAPKVVILKK-----ATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHTTC------GGGTTCTTCCHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC------CCCCCCCCCCHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455677777777766 432110 01111221 356888888888888888888888888888877655
Q ss_pred c
Q 006200 490 G 490 (657)
Q Consensus 490 ~ 490 (657)
+
T Consensus 86 ~ 86 (88)
T 1nkp_A 86 G 86 (88)
T ss_dssp C
T ss_pred h
Confidence 4
No 179
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=43.23 E-value=1.1e+02 Score=26.85 Aligned_cols=15 Identities=20% Similarity=0.279 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 006200 458 VKRLKAFVEKQCSEI 472 (657)
Q Consensus 458 v~~lk~~i~~Q~~ei 472 (657)
|+-||+.++++...+
T Consensus 32 VdlLKD~LEe~eE~~ 46 (103)
T 4h22_A 32 VDTLKDMLLELEEQL 46 (103)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455444444444
No 180
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=42.96 E-value=50 Score=35.43 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 537 DSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 537 e~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
+.+.++..+.+++.++..+...+..-|....+|-.++.++|
T Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 18 KIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33333333444444444445555555566666777777777
No 181
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=42.60 E-value=25 Score=27.59 Aligned_cols=34 Identities=29% Similarity=0.377 Sum_probs=17.5
Q ss_pred HHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 544 LAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 544 ~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
.+..|+..+..|......|..++..|..|+..|+
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554555555555555555555555555554
No 182
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=42.58 E-value=45 Score=26.26 Aligned_cols=6 Identities=50% Similarity=0.418 Sum_probs=2.2
Q ss_pred hHHHHH
Q 006200 568 HLEKEV 573 (657)
Q Consensus 568 ~le~e~ 573 (657)
.|..|+
T Consensus 48 ~L~~e~ 53 (63)
T 2wt7_A 48 NLLKEK 53 (63)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 183
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=42.55 E-value=69 Score=28.97 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=14.8
Q ss_pred HhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 554 SLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 554 ~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
.|+..++.|..++..++.+++.+.
T Consensus 65 eL~~ki~eL~~kvA~le~e~~~~e 88 (125)
T 2pms_C 65 ELSDKIDELDAEIAKLEDQLKAAE 88 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666554
No 184
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=41.67 E-value=1.1e+02 Score=23.25 Aligned_cols=20 Identities=10% Similarity=0.363 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006200 530 EKAQIESDSSMYRNLAAKME 549 (657)
Q Consensus 530 e~~~~eae~~~~~~~a~~le 549 (657)
++.++|.|..++|+....++
T Consensus 32 ~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 32 HLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHc
Confidence 34444555555444444433
No 185
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=41.63 E-value=1.2e+02 Score=26.51 Aligned_cols=47 Identities=15% Similarity=0.185 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006200 508 VQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKS 554 (657)
Q Consensus 508 ~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ 554 (657)
=|++.|+-.|++......+++.+...--.+.+..+-....++..+..
T Consensus 30 YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~ 76 (103)
T 4h22_A 30 YQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAE 76 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555544444555555555544433333
No 186
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=40.47 E-value=1.7e+02 Score=24.94 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006200 526 ILKEEKAQIESDSSMYRNL 544 (657)
Q Consensus 526 ~l~~e~~~~eae~~~~~~~ 544 (657)
.|=+-|..++.|++.|+++
T Consensus 69 ~LlnvKl~Le~EIatYrkL 87 (95)
T 3mov_A 69 QLLDVKLALDMEISAYRKL 87 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444445555554443
No 187
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=40.32 E-value=1.2e+02 Score=25.87 Aligned_cols=19 Identities=26% Similarity=0.530 Sum_probs=10.1
Q ss_pred HhHHHHHhHhHHHHHHHHH
Q 006200 559 YNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 559 ~~~Le~~~~~le~e~~~lr 577 (657)
|..|-.-...|+.|+.+-|
T Consensus 67 Yq~LlnvKl~Le~EIatYr 85 (95)
T 3mov_A 67 YEQLLDVKLALDMEISAYR 85 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444445666666655
No 188
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=40.20 E-value=33 Score=24.30 Aligned_cols=25 Identities=36% Similarity=0.468 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 460 RLKAFVEKQCSEIQKLLGRNATLAE 484 (657)
Q Consensus 460 ~lk~~i~~Q~~eiq~L~~~~~~L~~ 484 (657)
.|.-.|+.++++|..|+++|..|.+
T Consensus 11 kLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 11 KLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 3667789999999999999888764
No 189
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=39.96 E-value=29 Score=23.55 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=15.1
Q ss_pred HHHHhHHHhHHHHhHHHHHhHhHHHHH
Q 006200 547 KMESDLKSLSDAYNSLEQTNFHLEKEV 573 (657)
Q Consensus 547 ~le~~l~~ls~~~~~Le~~~~~le~e~ 573 (657)
++|.++.+|+.-+..|.....|||.-+
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666655555555555555543
No 190
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=39.86 E-value=75 Score=23.39 Aligned_cols=14 Identities=36% Similarity=0.399 Sum_probs=6.0
Q ss_pred hHHHHHhHhHHHHH
Q 006200 560 NSLEQTNFHLEKEV 573 (657)
Q Consensus 560 ~~Le~~~~~le~e~ 573 (657)
..|.-++.++|.|+
T Consensus 34 anlrdeiarlenev 47 (52)
T 3he5_B 34 ANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444443
No 191
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=39.81 E-value=99 Score=31.39 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 517 LHEASQRLEILKEEKAQIESDSSMYR 542 (657)
Q Consensus 517 L~~~~~~~e~l~~e~~~~eae~~~~~ 542 (657)
+.+++..+..+++++.+.+++++..+
T Consensus 71 ~~~~~a~l~~~~a~l~~a~~~~~~a~ 96 (341)
T 3fpp_A 71 IKEVEATLMELRAQRQQAEAELKLAR 96 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444333
No 192
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=39.41 E-value=32 Score=34.69 Aligned_cols=30 Identities=13% Similarity=0.168 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 509 QVETLRKDLHEASQRLEILKEEKAQIESDS 538 (657)
Q Consensus 509 q~e~L~~~L~~~~~~~e~l~~e~~~~eae~ 538 (657)
.+.+|++++..++++++.|.+++..++.|+
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El 84 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQL 84 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554444443333333333
No 193
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=39.34 E-value=1.3e+02 Score=23.10 Aligned_cols=28 Identities=11% Similarity=0.197 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 509 QVETLRKDLHEASQRLEILKEEKAQIES 536 (657)
Q Consensus 509 q~e~L~~~L~~~~~~~e~l~~e~~~~ea 536 (657)
++++|..++.+++....+|+.+...++.
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433333333
No 194
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=39.21 E-value=81 Score=33.96 Aligned_cols=67 Identities=19% Similarity=0.239 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 512 TLRKDLHEASQRLEILKEEKAQIESDSSM-YRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 512 ~L~~~L~~~~~~~e~l~~e~~~~eae~~~-~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
+|..+..++..+.+.|++++..+-.++.. -++.++++....+.++..+..|+.+...+++++..+--
T Consensus 32 ~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (421)
T 1ses_A 32 ALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLL 99 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444555555444444331 11234555566667777777777777777777765543
No 195
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=38.99 E-value=35 Score=23.91 Aligned_cols=27 Identities=19% Similarity=0.367 Sum_probs=21.4
Q ss_pred HHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 552 LKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 552 l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
+++|.+++++|-.+++.++.|+..+++
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456777888888888889998888874
No 196
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=38.83 E-value=31 Score=24.20 Aligned_cols=27 Identities=19% Similarity=0.400 Sum_probs=21.6
Q ss_pred HHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 552 LKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 552 l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
.++|.+++++|-.++..++.|+..+|+
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 356777888888888889999888875
No 197
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=38.61 E-value=1.8e+02 Score=24.64 Aligned_cols=14 Identities=43% Similarity=0.520 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 006200 471 EIQKLLGRNATLAE 484 (657)
Q Consensus 471 eiq~L~~~~~~L~~ 484 (657)
+||.|..|.++--.
T Consensus 10 ~mq~LNdRlAsyId 23 (93)
T 3s4r_A 10 ELQELNDRFANLID 23 (93)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 198
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=38.47 E-value=28 Score=35.10 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=16.8
Q ss_pred HHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 548 MESDLKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 548 le~~l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
++...+.|...++.+.+++.++.+|++.+++
T Consensus 66 L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 66 LAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333344444555555666666666666663
No 199
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=38.47 E-value=2.1e+02 Score=25.26 Aligned_cols=40 Identities=10% Similarity=0.225 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 510 VETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKME 549 (657)
Q Consensus 510 ~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le 549 (657)
+++|...++..+...+.+..++..++..+.++++..+.++
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~ 42 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLS 42 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555556666666666666666555555
No 200
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=38.38 E-value=3e+02 Score=27.09 Aligned_cols=51 Identities=10% Similarity=0.041 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 528 KEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 528 ~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
+..+..++.+...+.+...+....|.++...|...-++..+++.....+..
T Consensus 115 ~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~~~~~~~ 165 (305)
T 2efl_A 115 KQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDA 165 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334445555555555556666667777777777776666666555554443
No 201
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=38.35 E-value=2.4e+02 Score=25.95 Aligned_cols=11 Identities=18% Similarity=0.129 Sum_probs=4.7
Q ss_pred hHHHHHHHHHH
Q 006200 620 KVEKLSARLLE 630 (657)
Q Consensus 620 K~~~~k~~L~~ 630 (657)
|...|..+++.
T Consensus 130 rE~~yee~I~~ 140 (147)
T 2b9c_A 130 KNYHLENEVAR 140 (147)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 202
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=37.73 E-value=1.3e+02 Score=29.01 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=18.0
Q ss_pred HHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 544 LAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 544 ~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
.++++..+..-|+.++...+.++..|.++++.++
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~ 54 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDSLN 54 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555555555555555
No 203
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=37.48 E-value=2.1e+02 Score=24.98 Aligned_cols=30 Identities=23% Similarity=0.213 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 512 TLRKDLHEASQRLEILKEEKAQIESDSSMY 541 (657)
Q Consensus 512 ~L~~~L~~~~~~~e~l~~e~~~~eae~~~~ 541 (657)
...++|...++..+.+..++..++.++..+
T Consensus 12 E~~KqL~~~~q~~~e~e~~k~eL~~~~~~~ 41 (107)
T 2no2_A 12 EVTKQVSMARQAQVDLEREKKELEDSLERI 41 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 204
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=37.34 E-value=1.3e+02 Score=25.96 Aligned_cols=8 Identities=13% Similarity=0.057 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 006200 478 RNATLAEE 485 (657)
Q Consensus 478 ~~~~L~~~ 485 (657)
++..|..+
T Consensus 23 Ki~el~~e 30 (98)
T 2ke4_A 23 QLEERSRE 30 (98)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 205
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=36.91 E-value=2.8e+02 Score=26.29 Aligned_cols=60 Identities=8% Similarity=0.096 Sum_probs=37.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhccccHHHHHHHHHHHHHHHH
Q 006200 453 SDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKIGGDGASQSEQRASGALDRVQVETLRKDLHEASQ 522 (657)
Q Consensus 453 ~s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~q~e~L~~~L~~~~~ 522 (657)
.+.+-...+++..++...++..+++++.....++...-... ..++.++++|.+++.+++.
T Consensus 68 LT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~----------~~DeakI~aL~~Ei~~Lr~ 127 (175)
T 3lay_A 68 LTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTAS----------SPDTAKINAVAKEMESLGQ 127 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS----------SCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------CCCHHHHHHHHHHHHHHHH
Confidence 56777777888878777888888888777777775443211 1334555555555544444
No 206
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=36.76 E-value=1.9e+02 Score=28.33 Aligned_cols=29 Identities=7% Similarity=0.042 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006200 462 KAFVEKQCSEIQKLLGRNATLAEELAKIG 490 (657)
Q Consensus 462 k~~i~~Q~~eiq~L~~~~~~L~~~l~~~~ 490 (657)
+..+.....+++.++.++...+.++.+..
T Consensus 59 ~~~l~~a~a~l~~a~a~l~~a~~~~~r~~ 87 (277)
T 2f1m_A 59 QATYDSAKGDLAKAQAAANIAQLTVNRYQ 87 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666666655444
No 207
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=35.74 E-value=2.2e+02 Score=24.70 Aligned_cols=53 Identities=15% Similarity=0.290 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcC
Q 006200 527 LKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSG 579 (657)
Q Consensus 527 l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~ 579 (657)
|+....+++.|-..++......-..+..|...+..|..+|++|-.|.+.-+++
T Consensus 42 LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~~~ 94 (104)
T 3s9g_A 42 LEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHRQQ 94 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 33344444455555444444444455555555556666666666666555544
No 208
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=33.98 E-value=4.6e+02 Score=27.93 Aligned_cols=35 Identities=9% Similarity=0.138 Sum_probs=24.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 453 SDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELA 487 (657)
Q Consensus 453 ~s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~ 487 (657)
.+..|+..+++.+++.-++.++....+....++|+
T Consensus 85 ~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe 119 (390)
T 1deq_A 85 DSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLR 119 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 34567778888888877777766666666666553
No 209
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=33.36 E-value=2.1e+02 Score=30.70 Aligned_cols=59 Identities=19% Similarity=0.311 Sum_probs=34.6
Q ss_pred HHHHHHhHHHHHHhhhhhcCCCCCc-cccchhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006200 414 VDIIKSLESSIRENIVDVYSRPKSE-VAVVPAELEQRNGESDKDYVKRLKAFVEKQCSEIQKLLGRNATLAEELAKI 489 (657)
Q Consensus 414 v~f~K~n~~~I~~ai~~~~~dP~~e-~~~~~~~~~~~~~~~s~~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~~~ 489 (657)
++|+++|-..|++++.. + +.. .. .-+-+-.|-+.-++-..++++|+++-..+..++.+.
T Consensus 4 ~~~~r~~~~~~~~~~~~--r--~~~~~~-------------~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~ 63 (425)
T 2dq3_A 4 INLIREKPDYVKERLAT--R--DKELVS-------------LVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKL 63 (425)
T ss_dssp HHHHHHCHHHHHHHHTT--T--CGGGHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHhCHHHHHHHHHH--h--CCCchh-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999998851 1 110 00 011222344555666666777777777777766543
No 210
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=32.97 E-value=99 Score=34.10 Aligned_cols=25 Identities=8% Similarity=0.003 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 463 AFVEKQCSEIQKLLGRNATLAEELA 487 (657)
Q Consensus 463 ~~i~~Q~~eiq~L~~~~~~L~~~l~ 487 (657)
+.-++-..++++|+++...+..+++
T Consensus 40 ~~~r~~~~~~~~l~~~rn~~sk~i~ 64 (485)
T 3qne_A 40 KEWVKLRFDLDEHNKKLNSVQKEIG 64 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555543
No 211
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=32.58 E-value=4.7e+02 Score=27.61 Aligned_cols=127 Identities=17% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHhHHHhHHHHhHHHHHhHhHHH
Q 006200 508 VQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRN----------------LAAKMESDLKSLSDAYNSLEQTNFHLEK 571 (657)
Q Consensus 508 ~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~----------------~a~~le~~l~~ls~~~~~Le~~~~~le~ 571 (657)
.+.....++++..++++++......-.+.+...... ....+..+...|..+++++.....+|++
T Consensus 147 ~~~~~~~~e~~~k~~a~~af~~~~~~f~~q~~~~e~~~~~~~~~~~~~~~~~e~~~~~~n~~~l~~~~~~~~~~~~~l~~ 226 (373)
T 3hhm_B 147 EEYTRTSQEIQMKRTAIEAFNETIKIFEEQCQTQERYSKEYIEKFKREGNEKEIQRIMHNYDKLKSRISEIIDSRRRLEE 226 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHcCCCCCCcccHHHHHHHHHHHHHHHHHHhHhHHHHHhhhhhhhHHHHHHHHHHcCchhhhh-----hccCCCCC
Q 006200 572 EVKALKSGGSSVSSPDVEAIKAEAREEAQKESEAELNDLLVCLGQEQSKVEKLSARLLELGEDVEKL-----LEGIGDDM 646 (657)
Q Consensus 572 e~~~lr~~~~~~~~~~l~~~~~~~~~e~~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~lg~~v~~~-----~~~~~~~~ 646 (657)
+++.-.+ ...+++++++-|===|.++-..+.+|..+|...|..-.+. -...++.-
T Consensus 227 ~~~~~~~--------------------~~~~~~~~~~~lkp~l~ql~k~rd~~~~~L~~~g~~~~~i~~~L~~~~~~~~~ 286 (373)
T 3hhm_B 227 DLKKQAA--------------------EYREIDKRMNSIKPDLIQLRKTRDQYLMWLTQKGVRQKKLNEWLGNENTEDQY 286 (373)
T ss_dssp HHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHTC----------------------------
T ss_pred HHHHHHH--------------------HHHHHHHHhhccChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCCCCCcc
Q ss_pred CCCCCCcc
Q 006200 647 GLPEDDEE 654 (657)
Q Consensus 647 ~~~~~~~~ 654 (657)
+-.+++++
T Consensus 287 ~~~e~~~~ 294 (373)
T 3hhm_B 287 SLVEDDED 294 (373)
T ss_dssp --------
T ss_pred cccccccc
No 212
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=32.49 E-value=2.3e+02 Score=31.27 Aligned_cols=66 Identities=12% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHH
Q 006200 511 ETLRKDLHEASQR---------LEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKAL 576 (657)
Q Consensus 511 e~L~~~L~~~~~~---------~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~l 576 (657)
++++++.++.+++ .+..+.+..++++|++..-+.+.+.+..+.+....|+++..++....+.++.+
T Consensus 294 ~elkqrqeee~r~~qew~~~hp~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~ 368 (551)
T 2b5u_A 294 DQVKQRQDEENRRQQEWDATHPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADA 368 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHH
No 213
>2xoa_A Ryanodine receptor 1; metal transport, calcium channel, ION channel, membrane PROT malignant hyperthermia, cardiac arrhythmia; 2.50A {Oryctolagus cuniculus}
Probab=32.08 E-value=39 Score=37.89 Aligned_cols=57 Identities=11% Similarity=0.079 Sum_probs=30.5
Q ss_pred hhHHHHHhhcHHHHHHHHHh----ccCCC-------------chHhHHHHHHHHHHHHhcChhhHHHhhccccCC
Q 006200 54 TNKTVLVQKKALDNLLMLAV----ESQWA-------------PVAVRCAALRCISDIIAAHPKNRDVLASKVLGE 111 (657)
Q Consensus 54 ~nQ~~l~q~glL~~ll~La~----~s~~~-------------p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~ 111 (657)
..|+.|..-|++..|+.+.- .+... =..|-...-..++-+|+||..||.+|++- +|+
T Consensus 473 ~RQkLlrEq~il~ll~~il~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~Y~LL~~~i~~N~~N~~y~~~~-l~~ 546 (559)
T 2xoa_A 473 NRQSLFQEEGMLSLVLNCIDRLNVYTTAAHFAEYAGEEAAESWKEIVNLLYELLASLIRGNRANCALFSTN-LDW 546 (559)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHTTSCC------CCCSTGGGTHHHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHhhhchHHHHHHHHHHhhccCchhhHHHhhcchhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-HHH
Confidence 57999999999999988752 00000 02266667778899999999999999985 543
No 214
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=31.84 E-value=72 Score=35.87 Aligned_cols=46 Identities=11% Similarity=0.137 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHH
Q 006200 528 KEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEV 573 (657)
Q Consensus 528 ~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~ 573 (657)
+.++..++..+..++.-+.+.+..|.........|+.+....++|.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~ 379 (575)
T 2i1j_A 334 EKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAK 379 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444443
No 215
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=31.30 E-value=50 Score=23.85 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=17.9
Q ss_pred HHHHHhHHHhHHHHhHHHHHhHhHHHHHH
Q 006200 546 AKMESDLKSLSDAYNSLEQTNFHLEKEVK 574 (657)
Q Consensus 546 ~~le~~l~~ls~~~~~Le~~~~~le~e~~ 574 (657)
..+...+.+--+++-.||++|..|+.++.
T Consensus 9 q~LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 9 QELNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555666777777777777653
No 216
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=31.14 E-value=2.5e+02 Score=24.03 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEK 531 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~ 531 (657)
...+...++.|+++..-+++++-|.
T Consensus 48 k~~i~~ie~~ldEA~eLl~qMelE~ 72 (102)
T 2qyw_A 48 KKLVRDFDEKQQEANETLAEMEEEL 72 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777777777666655444
No 217
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=31.08 E-value=2e+02 Score=31.61 Aligned_cols=26 Identities=35% Similarity=0.362 Sum_probs=16.2
Q ss_pred HHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 552 LKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 552 l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
.+.+..++..|+.+...+++++..+-
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~l 138 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKLM 138 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666665544
No 218
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=30.69 E-value=2.9e+02 Score=26.83 Aligned_cols=30 Identities=27% Similarity=0.348 Sum_probs=14.1
Q ss_pred HHHHHHhHhHHHHHhhhhhhhHHHHHHHHHHc
Q 006200 600 QKESEAELNDLLVCLGQEQSKVEKLSARLLEL 631 (657)
Q Consensus 600 ~~~~~~e~~dLl~ll~d~~~K~~~~k~~L~~l 631 (657)
+..++..++++...|.+. ....|+.++++|
T Consensus 174 k~~i~~~l~~~~~~L~~~--~~~~i~~~~~~L 203 (219)
T 4e81_A 174 KTAIESALTALETALKGE--DKAAIEAKMQEL 203 (219)
T ss_dssp HHHHHHHHHHHHHHHHSS--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcC--CHHHHHHHHHHH
Confidence 344444444454444433 234555555544
No 219
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=30.64 E-value=2e+02 Score=31.62 Aligned_cols=56 Identities=18% Similarity=0.142 Sum_probs=30.6
Q ss_pred chHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchhHHhHHHHHHHHhhcCChh
Q 006200 79 PVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAADRIFNSFCEKNPD 151 (657)
Q Consensus 79 p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~~r~AA~~cf~ayl~~N~~ 151 (657)
...||.-||+++|.+. . |...+.+..-+.-++...++..|-+|+.|+-..+..+++
T Consensus 99 n~~ir~~AL~~L~~i~--------------~---~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~ 154 (591)
T 2vgl_B 99 NPLIRALAVRTMGCIR--------------V---DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ 154 (591)
T ss_dssp SHHHHHHHHHHHHTCC--------------S---GGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CHHHHHHHHHHHHcCC--------------h---HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh
Confidence 4456777777766553 1 111222222333455666777787777777655555544
No 220
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=30.63 E-value=1e+02 Score=30.38 Aligned_cols=12 Identities=25% Similarity=0.418 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 006200 509 QVETLRKDLHEA 520 (657)
Q Consensus 509 q~e~L~~~L~~~ 520 (657)
++++++.+|+.+
T Consensus 61 ~l~~a~a~l~~a 72 (277)
T 2f1m_A 61 TYDSAKGDLAKA 72 (277)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333344444333
No 221
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=30.50 E-value=2.4e+02 Score=23.57 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 510 VETLRKDLHEASQRLEILKEEKAQIESDSSMYR 542 (657)
Q Consensus 510 ~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~ 542 (657)
.+.|-+.+..++-..+.++.|+-+-|-.+..-|
T Consensus 21 ~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK 53 (81)
T 3qh9_A 21 AEELLQELRHLKIKVEELENERNQYEWKLKATK 53 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 345555666666666666666655555444433
No 222
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=29.65 E-value=1.6e+02 Score=22.82 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 511 ETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLA 545 (657)
Q Consensus 511 e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a 545 (657)
..++.+++...+.+..|=+-|..++.|++.|+.+.
T Consensus 17 ~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLL 51 (59)
T 1gk6_A 17 YHLENEVARLKKLVGDLLNVKMALDIEIATYRKLL 51 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44444444444455555555667777777776654
No 223
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=29.51 E-value=1.1e+02 Score=32.66 Aligned_cols=45 Identities=18% Similarity=0.267 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 006200 511 ETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSL 555 (657)
Q Consensus 511 e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~l 555 (657)
++|+.+++.+++..+.++.++.+++.+...+++...+.+..-++|
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l 50 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTL 50 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444333333
No 224
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=29.40 E-value=2.5e+02 Score=23.43 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 006200 529 EEKAQIESDSSMYRNLAAKMESDLKSL 555 (657)
Q Consensus 529 ~e~~~~eae~~~~~~~a~~le~~l~~l 555 (657)
.++..++.|+..++-.++++.-++..+
T Consensus 27 ~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql 53 (83)
T 2xdj_A 27 QQLSDNQSDIDSLRGQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333344444444444444444443333
No 225
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=29.28 E-value=16 Score=34.43 Aligned_cols=7 Identities=29% Similarity=0.733 Sum_probs=3.0
Q ss_pred HHHHhcc
Q 006200 354 FDEMQKS 360 (657)
Q Consensus 354 l~~lr~~ 360 (657)
+.+|+++
T Consensus 13 l~~l~~~ 19 (169)
T 1ayz_A 13 FKRMKED 19 (169)
T ss_dssp HHHHHHS
T ss_pred HHHHHhC
Confidence 3444443
No 226
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=29.10 E-value=7.4e+02 Score=28.84 Aligned_cols=108 Identities=13% Similarity=0.102 Sum_probs=66.2
Q ss_pred hhHHHHHhhcHHHHHHHHHhccCCCc-hHhHHHHHHHHHHHH-hcChhhHHHhhcccc----C------C-CCc------
Q 006200 54 TNKTVLVQKKALDNLLMLAVESQWAP-VAVRCAALRCISDII-AAHPKNRDVLASKVL----G------E-EPQ------ 114 (657)
Q Consensus 54 ~nQ~~l~q~glL~~ll~La~~s~~~p-~~Ir~~AL~t~adlI-rgn~~nQ~~fa~~~v----p------~-~p~------ 114 (657)
.|...+++.|.+..|+.+... .... ..+|..|..++|.+. ..|+.+ .|+.-.+ | . .|.
T Consensus 489 ~~R~~lvqqGal~~LL~lL~s-~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l 565 (778)
T 3opb_A 489 NFIPQLAQQGAVKIILEYLAN-KQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNPL 565 (778)
T ss_dssp GGHHHHHHTTHHHHHHHHTTC-C---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC-
T ss_pred HHHHHHHHCCCHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHHHcCCCCCcccccc
Confidence 688889999999999999873 2111 248999999999987 555554 3532111 1 0 011
Q ss_pred ----------cchHHHHHHHHHhccC----chhH---H-hHHHHHHHHhhc-CChhhHH---HHHhhhcCCC
Q 006200 115 ----------VEAALNSILRIILRTS----SMQE---F-LAADRIFNSFCE-KNPDGQA---MLTSTLIPQP 164 (657)
Q Consensus 115 ----------~~pal~~LL~~~L~~~----~~~~---r-~AA~~cf~ayl~-~N~~~q~---~L~~tl~p~~ 164 (657)
.-+|+.+|.+++-..+ +... + ..+..++..++. +|+.+|. .++.-|...+
T Consensus 566 ~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~ 637 (778)
T 3opb_A 566 HNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHP 637 (778)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSG
T ss_pred cccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc
Confidence 1257788888876542 2222 2 246667776666 6777773 5555665433
No 227
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=28.50 E-value=5e+02 Score=26.74 Aligned_cols=11 Identities=18% Similarity=0.456 Sum_probs=6.2
Q ss_pred HHHHHHhHhHH
Q 006200 600 QKESEAELNDL 610 (657)
Q Consensus 600 ~~~~~~e~~dL 610 (657)
++.+.++.++|
T Consensus 92 k~~Le~~ierL 102 (302)
T 3ibp_A 92 KNAVDEEIERL 102 (302)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45556666663
No 228
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=28.39 E-value=66 Score=32.73 Aligned_cols=98 Identities=16% Similarity=0.213 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHhccccccCCCCCCCCcchHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHhh
Q 006200 199 VCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAGYIQLIILKLLVTWLA 278 (657)
Q Consensus 199 ~~wfAa~iL~hll~dn~~~Ke~al~V~l~~~~~~~~~~e~ll~~i~~~l~~a~~~~~~d~ri~~~~~~~gyL~LL~~WL~ 278 (657)
+.| .+..|+.++..+|+.|...++-.+.. -|..- |..++..| +.+|.|+.-|-..+.-.-
T Consensus 72 RVc-naLaLlQcvAshpetr~~Fl~a~ipl---------yLyPf----L~t~sk~r------~fE~LRLtsLGVIgaLvK 131 (268)
T 2fv2_A 72 RVC-NALALLQCVASHPETRSAFLAAHIPL---------FLYPF----LHTVSKTR------PFEYLRLTSLGVIGALVK 131 (268)
T ss_dssp HHH-HHHHHHHHHHHCTTTHHHHHHTTGGG---------GTHHH----HHCCCCSH------HHHHHHHHHHHHHHHHGG
T ss_pred HHH-HHHHHHHHHHcCcchhhHHHHccchH---------Hhhhh----hccccCCC------cchhhhhhHHHHHHHHhc
Confidence 455 46788888889999999888877432 12222 22122211 245656544444444443
Q ss_pred cChHHHHHhhcCCChHHHHHHHhhCCCCchHhHHHHHHHh
Q 006200 279 DCPNAVHCFLDSRPHLTYLLELVSNPSATVCTRGLAAVLL 318 (657)
Q Consensus 279 e~p~AV~~FL~~~s~l~~L~~~i~~~~~~~lVqGL~A~LL 318 (657)
.+-..|-.||=+...++-.+-.+... .-+-+-+++|.+
T Consensus 132 ~dd~eVi~fLL~tEiiplCLrime~G--selSKtvAtfIl 169 (268)
T 2fv2_A 132 TDEQEVINFLLTTEIIPLCLRIMESG--SELSKTVATFIL 169 (268)
T ss_dssp GCCHHHHHHHHHTTHHHHHHHHHHHS--CHHHHHHHHHHH
T ss_pred cCcHHHHHHHHhhhHHHHHHHHHhhc--cHHHHHHHHHHH
Confidence 34445666666666788777777433 334455566654
No 229
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=28.08 E-value=2.6e+02 Score=23.30 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 459 KRLKAFVEKQCSEIQKLLGRNATLAE 484 (657)
Q Consensus 459 ~~lk~~i~~Q~~eiq~L~~~~~~L~~ 484 (657)
..||+.|+.+..-|+.|.+++.....
T Consensus 25 ~~lrq~I~DKQ~~i~~Lt~eLq~A~~ 50 (90)
T 4b6x_A 25 AALRQEIEDKQLMVNNLTDELQDAID 50 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888777655544
No 230
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=27.98 E-value=41 Score=33.78 Aligned_cols=19 Identities=16% Similarity=0.106 Sum_probs=11.4
Q ss_pred cHHHHHHHHHhHHHHHHhh
Q 006200 410 DKHFVDIIKSLESSIRENI 428 (657)
Q Consensus 410 D~~Fv~f~K~n~~~I~~ai 428 (657)
|+.|.+++|=...|+++-+
T Consensus 108 DFtl~DL~kP~~~Rt~~iL 126 (250)
T 2ve7_C 108 DFETADILCPKAKRTSRFL 126 (250)
T ss_dssp CCCHHHHHSCCHHHHHHHH
T ss_pred CCcHhHhcCCchHHHHHHH
Confidence 5566666666666655544
No 231
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=27.70 E-value=88 Score=23.97 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 457 YVKRLKAFVEKQCSEIQKLLGRNATLAEELA 487 (657)
Q Consensus 457 ~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~ 487 (657)
=++.||....+-..++..|+.++..|..+|.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666666666666666666553
No 232
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=27.22 E-value=3.6e+02 Score=26.05 Aligned_cols=13 Identities=23% Similarity=0.391 Sum_probs=6.8
Q ss_pred ccHHHHHHHHHHH
Q 006200 505 LDRVQVETLRKDL 517 (657)
Q Consensus 505 ~~~~q~e~L~~~L 517 (657)
....+++...+++
T Consensus 116 Ls~eei~~~~~~~ 128 (227)
T 1u00_A 116 LTDSEIASMIKDS 128 (227)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 4456666554444
No 233
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=27.19 E-value=54 Score=35.39 Aligned_cols=63 Identities=22% Similarity=0.357 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 515 KDLHEASQRLEILKEEKAQIESDSSMYRN---LAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 515 ~~L~~~~~~~e~l~~e~~~~eae~~~~~~---~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
.+..+++.+.+.|++++..+-.++..++. .++++...++.++..+..|+.+...+++++..+-
T Consensus 37 ~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T 2dq3_A 37 KRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTL 102 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444443333211 1223334555666666667777777777665554
No 234
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=26.68 E-value=3.1e+02 Score=23.61 Aligned_cols=20 Identities=10% Similarity=0.202 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHhHH
Q 006200 534 IESDSSMYRNLAAKMESDLK 553 (657)
Q Consensus 534 ~eae~~~~~~~a~~le~~l~ 553 (657)
.+++++....+.-.|...|.
T Consensus 37 ~eaQAaTCNqTV~tL~~SL~ 56 (99)
T 3ni0_A 37 AETQANSCNLTVVTLQESLE 56 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555544444444333
No 235
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=25.84 E-value=1.6e+02 Score=31.60 Aligned_cols=53 Identities=17% Similarity=0.152 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 511 ETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 511 e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
.+|+.+|.+++++.+.++.++.+.+++.+.+++ ++-..+.+..+|-.++.+++
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~--------------~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKE--------------QLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhC
Confidence 456666666666665555555555555554333 33333344555666666666
No 236
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=25.32 E-value=1.5e+02 Score=29.23 Aligned_cols=81 Identities=10% Similarity=-0.003 Sum_probs=56.7
Q ss_pred HHHHHHhccCCCchHhHHHHHHHHHHHHhcChhhHHHhhccccCCCCccchHHHHHHHHHhccCchhHHhHHHHHHHHhh
Q 006200 67 NLLMLAVESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAADRIFNSFC 146 (657)
Q Consensus 67 ~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~~~~~~~r~AA~~cf~ayl 146 (657)
.+.++.- |......++..|..++..+-.+|+.+.......-. .|.++.+| ...+...+..|+.++...-
T Consensus 12 ~lV~lL~-s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~------Ip~LV~lL----~s~~~~vq~~Aa~aL~nLa 80 (233)
T 3tt9_A 12 RAVSMLE-ADHMLPSRISAAATFIQHECFQKSEARKRVNQLRG------ILKLLQLL----KVQNEDVQRAVCGALRNLV 80 (233)
T ss_dssp HHHHTCC-SSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTH------HHHHHHGG----GCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-CCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCC------HHHHHHHH----cCCCHHHHHHHHHHHHHHH
Confidence 4444444 43222378888999999999999888877654422 45555554 4566777888999999998
Q ss_pred cCChhhHHHHHh
Q 006200 147 EKNPDGQAMLTS 158 (657)
Q Consensus 147 ~~N~~~q~~L~~ 158 (657)
.+|++.+..|..
T Consensus 81 ~~~~~nk~~I~~ 92 (233)
T 3tt9_A 81 FEDNDNKLEVAE 92 (233)
T ss_dssp TTCHHHHHHHHH
T ss_pred hCCHHHHHHHHH
Confidence 899988876664
No 237
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=25.18 E-value=1.7e+02 Score=30.61 Aligned_cols=32 Identities=13% Similarity=0.252 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 456 DYVKRLKAFVEKQCSEIQKLLGRNATLAEELA 487 (657)
Q Consensus 456 ~~v~~lk~~i~~Q~~eiq~L~~~~~~L~~~l~ 487 (657)
+.+..|+..|.+.....+.+...+.....++.
T Consensus 123 ~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~ 154 (346)
T 2nrj_A 123 EGITDLRGEIQQNQKYAQQLIEELTKLRDSIG 154 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777777766653
No 238
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=24.98 E-value=3e+02 Score=22.92 Aligned_cols=17 Identities=24% Similarity=0.513 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006200 510 VETLRKDLHEASQRLEI 526 (657)
Q Consensus 510 ~e~L~~~L~~~~~~~e~ 526 (657)
+..|+.++++....++.
T Consensus 36 v~~LRGqiE~~~~~l~q 52 (83)
T 2xdj_A 36 IDSLRGQIQENQYQLNQ 52 (83)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHH
Confidence 34444444444444433
No 239
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=24.76 E-value=1.7e+02 Score=22.98 Aligned_cols=27 Identities=44% Similarity=0.564 Sum_probs=18.0
Q ss_pred HHhHHHHhHHHHHhHhHHHHHHHHHcC
Q 006200 553 KSLSDAYNSLEQTNFHLEKEVKALKSG 579 (657)
Q Consensus 553 ~~ls~~~~~Le~~~~~le~e~~~lr~~ 579 (657)
..|...+..|+.+|..|..++..|++.
T Consensus 33 ~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 33 KQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677777777777777754
No 240
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=24.61 E-value=1.2e+02 Score=21.33 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 462 KAFVEKQCSEIQKLLGRNATLAEEL 486 (657)
Q Consensus 462 k~~i~~Q~~eiq~L~~~~~~L~~~l 486 (657)
|.......++|.+|+.+|+.|.+|+
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHH
Confidence 4566777788888888888888865
No 241
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=24.42 E-value=1.5e+02 Score=31.86 Aligned_cols=34 Identities=18% Similarity=0.049 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 507 RVQVETLRKDLHEASQRLEILKEEKAQIESDSSM 540 (657)
Q Consensus 507 ~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~ 540 (657)
+.++..|+++.++..+.++.+.++++.++.++..
T Consensus 9 ~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 42 (412)
T 3u06_A 9 STEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ 42 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555544444
No 242
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=23.50 E-value=2.4e+02 Score=21.33 Aligned_cols=7 Identities=29% Similarity=0.515 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 006200 512 TLRKDLH 518 (657)
Q Consensus 512 ~L~~~L~ 518 (657)
.+++.+.
T Consensus 9 ~~~~~~~ 15 (60)
T 3htk_A 9 TLENQVE 15 (60)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 243
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=23.48 E-value=1.3e+02 Score=25.29 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.1
Q ss_pred hhhhHHHHHHHHHHcCchhhhhh
Q 006200 617 EQSKVEKLSARLLELGEDVEKLL 639 (657)
Q Consensus 617 ~~~K~~~~k~~L~~lg~~v~~~~ 639 (657)
-..|+.+|++.|.+-|+++.+.-
T Consensus 57 r~~Kl~~~~e~l~~~GI~~eeL~ 79 (86)
T 3nr7_A 57 RTRKLQQYREMLIADGIDPNELL 79 (86)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHH
Confidence 56799999999999999998764
No 244
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=23.44 E-value=4.3e+02 Score=24.20 Aligned_cols=38 Identities=24% Similarity=0.455 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHH
Q 006200 526 ILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLE 563 (657)
Q Consensus 526 ~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le 563 (657)
.++.++.+.+..+......+..|+..|......+.+||
T Consensus 84 ~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE 121 (147)
T 2b9c_A 84 IIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLE 121 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33344444444444444444444444444444444443
No 245
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=23.29 E-value=7.7e+02 Score=27.04 Aligned_cols=50 Identities=18% Similarity=0.247 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHH
Q 006200 528 KEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALK 577 (657)
Q Consensus 528 ~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr 577 (657)
++++..+++.+..+++..+..-.+.+.+.++++.++++..-+++.+..++
T Consensus 362 rNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~ 411 (602)
T 1cii_A 362 RNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGIN 411 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 44555556666665555555555555555555555544444444444443
No 246
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=23.28 E-value=8.2e+02 Score=27.37 Aligned_cols=13 Identities=23% Similarity=0.189 Sum_probs=6.7
Q ss_pred cHHHHHHHHHhHH
Q 006200 410 DKHFVDIIKSLES 422 (657)
Q Consensus 410 D~~Fv~f~K~n~~ 422 (657)
+..|-+|++.|+.
T Consensus 389 ~~~~~~~~~~N~~ 401 (592)
T 1f5n_A 389 EKKRDDFCKQNQE 401 (592)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555553
No 247
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=23.24 E-value=4.4e+02 Score=24.28 Aligned_cols=41 Identities=27% Similarity=0.312 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 506 DRVQVETLRKDLHEASQRLEILKEEKAQIESDSSMYRNLAAKME 549 (657)
Q Consensus 506 ~~~q~e~L~~~L~~~~~~~e~l~~e~~~~eae~~~~~~~a~~le 549 (657)
.+.+.+.|.++.+++...+ .+=+.++++|+++-++.+.-++
T Consensus 66 Dk~~~e~l~~~veeA~~~L---~eYn~rL~~E~~dR~~L~~~L~ 106 (152)
T 4fla_A 66 DKEAAERLSKTVDEACLLL---AEYNGRLAAELEDRRQLARMLV 106 (152)
T ss_dssp SHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777877887777754 4455788888888776666666
No 248
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=23.16 E-value=2.1e+02 Score=20.95 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=14.5
Q ss_pred HHHHHhHHHhHHHHhHHHHHhHhHHHH
Q 006200 546 AKMESDLKSLSDAYNSLEQTNFHLEKE 572 (657)
Q Consensus 546 ~~le~~l~~ls~~~~~Le~~~~~le~e 572 (657)
..++.....|..+++.|+.+|+-|.+-
T Consensus 13 k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 13 KDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344444444555566666666655543
No 249
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=22.98 E-value=8.3e+02 Score=27.32 Aligned_cols=21 Identities=24% Similarity=0.615 Sum_probs=9.8
Q ss_pred HHHHhHHHHHHhhhh-hcCCCC
Q 006200 416 IIKSLESSIRENIVD-VYSRPK 436 (657)
Q Consensus 416 f~K~n~~~I~~ai~~-~~~dP~ 436 (657)
+++.++..|.+.|.. .|+-|+
T Consensus 410 ll~~l~~~l~~~i~~g~~~~p~ 431 (592)
T 1f5n_A 410 LLQVIFSPLEEEVKAGIYSKPG 431 (592)
T ss_dssp HHHHHHHHHHHHHHTTTTSSTT
T ss_pred HHHHHHHHHHHHHhcCCcCCCC
Confidence 344555555555532 244444
No 250
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=22.93 E-value=3.1e+02 Score=22.38 Aligned_cols=7 Identities=29% Similarity=0.358 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 006200 511 ETLRKDL 517 (657)
Q Consensus 511 e~L~~~L 517 (657)
.+|+..|
T Consensus 22 ~eLq~~L 28 (72)
T 3nmd_A 22 RDLQYAL 28 (72)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344444
No 251
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=22.69 E-value=4.1e+02 Score=23.68 Aligned_cols=39 Identities=31% Similarity=0.497 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhHHHhHHHHhHHHHHhHhHHHHHHHHHcC
Q 006200 540 MYRNLAAKMESDLKSLSDAYNSLEQTNFHLEKEVKALKSG 579 (657)
Q Consensus 540 ~~~~~a~~le~~l~~ls~~~~~Le~~~~~le~e~~~lr~~ 579 (657)
.|...+.+++.-++.|...+...+.-+.-.+ .++.+|+|
T Consensus 72 ~y~~l~k~Y~~~~keLd~~ik~qekiIdnFE-~ik~lr~g 110 (119)
T 3etw_A 72 QYQELASKYEDALKKLEAEMEQQKAVISDFE-KIQALRAG 110 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcC
Confidence 3444455555444444444444433333232 24566654
No 252
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=22.66 E-value=1.6e+02 Score=19.78 Aligned_cols=14 Identities=21% Similarity=0.254 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 006200 528 KEEKAQIESDSSMY 541 (657)
Q Consensus 528 ~~e~~~~eae~~~~ 541 (657)
+.|++.++=|++.+
T Consensus 15 kkeiaalkfeiaal 28 (33)
T 4dzn_A 15 KKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344444443
No 253
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=22.20 E-value=2.2e+02 Score=21.76 Aligned_cols=27 Identities=44% Similarity=0.498 Sum_probs=17.9
Q ss_pred HHHhHHHHhHHHHHhHhHHHHHHHHHc
Q 006200 552 LKSLSDAYNSLEQTNFHLEKEVKALKS 578 (657)
Q Consensus 552 l~~ls~~~~~Le~~~~~le~e~~~lr~ 578 (657)
+..|...+..|+.+|..|..++..+++
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566677777777777777765
No 254
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=22.04 E-value=41 Score=32.96 Aligned_cols=7 Identities=29% Similarity=0.676 Sum_probs=3.2
Q ss_pred HHHHHHH
Q 006200 413 FVDIIKS 419 (657)
Q Consensus 413 Fv~f~K~ 419 (657)
|++|+|.
T Consensus 12 ~~~~~~~ 18 (208)
T 2iu1_A 12 LFDFVKK 18 (208)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 255
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=21.76 E-value=6.4e+02 Score=25.58 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=14.3
Q ss_pred HHHHhHhHHHHHhhhhhhh-HHHHHHHHHH
Q 006200 602 ESEAELNDLLVCLGQEQSK-VEKLSARLLE 630 (657)
Q Consensus 602 ~~~~e~~dLl~ll~d~~~K-~~~~k~~L~~ 630 (657)
.-..++-+++-.|-+++.+ +...|.-|..
T Consensus 228 ~~~~~~~~~~~~~Q~lee~Rl~~lk~~l~~ 257 (350)
T 3aco_A 228 QYMENMEQVFEQCQQFEEKRLRFFREVLLE 257 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555543 3444444443
No 256
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=21.66 E-value=3e+02 Score=22.62 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=10.9
Q ss_pred hHHHHhHHHHHhHhHHHHHHHHHcC
Q 006200 555 LSDAYNSLEQTNFHLEKEVKALKSG 579 (657)
Q Consensus 555 ls~~~~~Le~~~~~le~e~~~lr~~ 579 (657)
|++.+....+++.+++.+++.+.++
T Consensus 33 Ln~~v~~Qq~~Id~L~~ql~~L~~r 57 (78)
T 3efg_A 33 LSEALADARLTGARNAELIRHLLED 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444555444443
No 257
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=21.33 E-value=4.9e+02 Score=24.54 Aligned_cols=16 Identities=6% Similarity=0.027 Sum_probs=0.0
Q ss_pred cccccHHHHHHHHHhH
Q 006200 406 SSMFDKHFVDIIKSLE 421 (657)
Q Consensus 406 ~v~FD~~Fv~f~K~n~ 421 (657)
.+||-..+-++.|...
T Consensus 17 ~~~~~~~~Mk~~kk~~ 32 (175)
T 3lay_A 17 NLYFQSNAMKRNNKSA 32 (175)
T ss_dssp ----------------
T ss_pred HHHhhHHHHHHHHHHH
Confidence 6888888888877754
No 258
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=21.14 E-value=1.7e+02 Score=24.17 Aligned_cols=15 Identities=20% Similarity=0.403 Sum_probs=6.3
Q ss_pred HHHhHhHHHHHHHHH
Q 006200 563 EQTNFHLEKEVKALK 577 (657)
Q Consensus 563 e~~~~~le~e~~~lr 577 (657)
..++..|++|+..|+
T Consensus 56 ~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 56 QKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333444444444
No 259
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=20.79 E-value=5e+02 Score=28.03 Aligned_cols=148 Identities=9% Similarity=0.134 Sum_probs=82.6
Q ss_pred CCchhHHHHHHHHHHHhhHhccCCCCCCCCCccchhhhHHHHHhhcHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcC
Q 006200 18 SFTQQKTINLLSALETINLLIVRGSEADPGKDAHKLTNKTVLVQKKALDNLLMLAVESQWAPVAVRCAALRCISDIIAAH 97 (657)
Q Consensus 18 ~W~~Qk~~N~~~~L~ivrllV~~g~~~~~~~~~~~~~nQ~~l~q~glL~~ll~La~~s~~~p~~Ir~~AL~t~adlIrgn 97 (657)
.|+ |..-+|+++|++|.-.. .+ +.+..++..++. ..|...+--+|++++.++..-
T Consensus 239 ~WP-----~~FPaLDLLRl~v~~p~-----------~~-------~~l~~li~~~l~--~~~~an~MltlR~laNlF~~~ 293 (425)
T 3pst_A 239 NWE-----IKTPAYDIVRLIVKKLP-----------YS-------SDIKDYIEEGLG--NKNITLTMLTVRILVNCFNNE 293 (425)
T ss_dssp HCS-----CCHHHHHHHHHHGGGCS-----------CG-------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHTTCT
T ss_pred hCC-----cccHHHHHHHHHHcCCc-----------hH-------HHHHHHHHHhcC--CCChhHHHHHHHHHHHhcCCc
Confidence 477 57789999999996421 11 245567777774 358899999999999999754
Q ss_pred hhhHHHhhccccCCCCccchHHHHHHHHHhc-------cCchhHHhHHHHHHH---HhhcCChhhHHHHHhhhcCCCCCC
Q 006200 98 PKNRDVLASKVLGEEPQVEAALNSILRIILR-------TSSMQEFLAADRIFN---SFCEKNPDGQAMLTSTLIPQPQSM 167 (657)
Q Consensus 98 ~~nQ~~fa~~~vp~~p~~~pal~~LL~~~L~-------~~~~~~r~AA~~cf~---ayl~~N~~~q~~L~~tl~p~~~~~ 167 (657)
.--+..++.- .....++..++. ..+...++|+..++- +|+.+...
T Consensus 294 ~~g~~ll~~~---------~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---------------- 348 (425)
T 3pst_A 294 NWGVKLLESN---------QVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---------------- 348 (425)
T ss_dssp TTHHHHHTSH---------HHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS----------------
T ss_pred chHHHHhhCc---------hhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc----------------
Confidence 3223333210 112223332221 112234555443333 22222110
Q ss_pred CCCCCcccccCChhHHHhhhccc--CCC---CcchhHHHHHHHHHHHHhcCCHHHHHHHhcc
Q 006200 168 SHAPLEEDVNMSFGSMLIRGLTL--GES---DGDLEVCCRAASVLSHILMDNLQCKERVLRI 224 (657)
Q Consensus 168 ~~~~~~~~~~~s~g~~Ll~~L~s--~d~---~~dpy~~wfAa~iL~hll~dn~~~Ke~al~V 224 (657)
.+.....|+..+-. ... ..|+...|.+-+.|-+|+.-.+..|..+..+
T Consensus 349 ---------~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~~~~a~~~ 401 (425)
T 3pst_A 349 ---------DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFANSV 401 (425)
T ss_dssp ---------CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHHHHTTC
T ss_pred ---------hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHHHhcCH
Confidence 01222334444421 000 2367888999999999998888888876643
No 260
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=20.74 E-value=1.3e+02 Score=24.34 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=13.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH
Q 006200 453 SDKDYVKRLKAFVEKQCSEIQKLLGR 478 (657)
Q Consensus 453 ~s~~~v~~lk~~i~~Q~~eiq~L~~~ 478 (657)
+....++.+.+.|+.++..|.+|+..
T Consensus 8 ~~~~~~e~~~~~i~~Kde~I~eLE~~ 33 (67)
T 1zxa_A 8 STSELEEDFAKILMLKEERIKELEKR 33 (67)
T ss_dssp ---------CHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHccHHHHHHHHHH
Confidence 34556677778888888888776655
No 261
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=20.57 E-value=1.5e+02 Score=20.88 Aligned_cols=8 Identities=38% Similarity=0.555 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 006200 528 KEEKAQIE 535 (657)
Q Consensus 528 ~~e~~~~e 535 (657)
+.+++.++
T Consensus 20 krQN~~Le 27 (34)
T 1a93_B 20 KRQNALLE 27 (34)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 262
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=20.16 E-value=3e+02 Score=21.24 Aligned_cols=25 Identities=16% Similarity=0.040 Sum_probs=19.0
Q ss_pred HhHhHHHHHhhhhhhhHHHHHHHHH
Q 006200 605 AELNDLLVCLGQEQSKVEKLSARLL 629 (657)
Q Consensus 605 ~e~~dLl~ll~d~~~K~~~~k~~L~ 629 (657)
.|-.+||=+=.-+|--+.-||+.|.
T Consensus 28 ~eYq~LlniK~~Le~EIatYRkLLE 52 (59)
T 1gk6_A 28 KLVGDLLNVKMALDIEIATYRKLLE 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 4666777777778888899998775
No 263
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=20.08 E-value=2.1e+02 Score=25.88 Aligned_cols=42 Identities=26% Similarity=0.256 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHhHHHHHhH
Q 006200 526 ILKEEKAQIESDSSMYRNLAAKMESDLKSLSDAYNSLEQTNF 567 (657)
Q Consensus 526 ~l~~e~~~~eae~~~~~~~a~~le~~l~~ls~~~~~Le~~~~ 567 (657)
.|+-+....++++.+-++.+..-...|..|..+|..|-++..
T Consensus 59 ~L~lQ~esmeaalkmEr~~~~eEKrkLAqLQ~AY~~LfqeYd 100 (130)
T 3cl3_D 59 QLRMQGQSVEAALRMERQAASEEKRKLAQLQVAYHQLFQEYD 100 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666777777777777777789999999999977633
Done!