Query 006201
Match_columns 657
No_of_seqs 197 out of 1914
Neff 10.8
Searched_HMMs 46136
Date Thu Mar 28 19:50:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006201.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006201hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1241 Karyopherin (importin) 100.0 7.2E-79 1.6E-83 600.2 58.1 632 3-649 1-638 (859)
2 KOG2171 Karyopherin (importin) 100.0 2.1E-66 4.5E-71 538.6 53.6 586 2-651 3-608 (1075)
3 KOG2023 Nuclear transport rece 100.0 4.4E-67 9.4E-72 508.1 35.2 575 3-647 13-658 (885)
4 COG5215 KAP95 Karyopherin (imp 100.0 5.9E-63 1.3E-67 471.5 55.9 627 4-650 5-640 (858)
5 KOG1991 Nuclear transport rece 100.0 2.9E-36 6.2E-41 308.2 55.3 550 1-595 2-632 (1010)
6 KOG1992 Nuclear export recepto 100.0 1.2E-32 2.5E-37 275.5 43.1 600 4-651 6-686 (960)
7 KOG2274 Predicted importin 9 [ 100.0 5.7E-30 1.2E-34 259.1 47.0 577 2-642 3-651 (1005)
8 KOG1993 Nuclear transport rece 100.0 1.3E-29 2.8E-34 252.6 38.7 606 5-653 2-710 (978)
9 KOG2171 Karyopherin (importin) 100.0 4E-28 8.6E-33 254.0 47.6 567 14-650 48-684 (1075)
10 KOG1241 Karyopherin (importin) 100.0 1.6E-26 3.4E-31 230.2 43.1 502 91-650 128-724 (859)
11 KOG2023 Nuclear transport rece 100.0 1.1E-27 2.5E-32 234.3 34.4 581 11-650 56-704 (885)
12 COG5656 SXM1 Importin, protein 100.0 5.1E-24 1.1E-28 211.4 50.0 551 1-595 1-631 (970)
13 KOG1824 TATA-binding protein-i 100.0 2.1E-23 4.6E-28 212.0 47.1 567 7-647 9-690 (1233)
14 KOG2021 Nuclear mRNA export fa 100.0 7.3E-24 1.6E-28 210.5 41.7 613 1-653 1-742 (980)
15 COG5215 KAP95 Karyopherin (imp 99.9 1.6E-22 3.6E-27 195.1 43.5 528 50-650 105-724 (858)
16 KOG1824 TATA-binding protein-i 99.9 1.2E-19 2.6E-24 185.1 51.5 606 4-655 47-751 (1233)
17 KOG0213 Splicing factor 3b, su 99.9 8.2E-20 1.8E-24 181.5 42.3 608 2-655 362-1126(1172)
18 COG5657 CSE1 CAS/CSE protein i 99.9 3.7E-20 8E-25 189.3 39.8 599 5-656 6-673 (947)
19 COG5101 CRM1 Importin beta-rel 99.9 1.2E-18 2.7E-23 170.3 47.4 525 5-561 16-675 (1053)
20 KOG2022 Nuclear transport rece 99.9 2.1E-17 4.6E-22 168.3 52.2 600 4-648 8-745 (982)
21 COG5181 HSH155 U2 snRNP splice 99.8 1.3E-17 2.8E-22 162.9 32.8 609 2-655 167-931 (975)
22 KOG2081 Nuclear transport regu 99.8 3.2E-15 6.9E-20 146.5 37.2 474 21-550 2-551 (559)
23 KOG1242 Protein containing ada 99.8 1.1E-15 2.5E-20 151.8 33.6 478 87-651 50-537 (569)
24 KOG1242 Protein containing ada 99.8 1.1E-14 2.3E-19 144.9 36.0 441 38-560 97-547 (569)
25 KOG0915 Uncharacterized conser 99.7 8.5E-15 1.8E-19 157.5 34.8 465 85-651 811-1321(1702)
26 PLN03200 cellulose synthase-in 99.7 1.8E-13 3.8E-18 156.6 45.5 552 8-652 194-826 (2102)
27 PLN03200 cellulose synthase-in 99.7 1.5E-13 3.2E-18 157.3 40.6 578 3-637 13-723 (2102)
28 PF01602 Adaptin_N: Adaptin N 99.7 4E-13 8.6E-18 144.2 42.2 510 4-636 8-523 (526)
29 KOG0212 Uncharacterized conser 99.7 1.3E-13 2.8E-18 134.3 28.9 395 179-640 5-409 (675)
30 PTZ00429 beta-adaptin; Provisi 99.6 1.9E-10 4E-15 123.0 51.3 438 2-541 67-512 (746)
31 PF01602 Adaptin_N: Adaptin N 99.6 7.2E-12 1.6E-16 134.5 40.4 443 5-534 44-522 (526)
32 KOG0213 Splicing factor 3b, su 99.6 4.8E-12 1E-16 127.0 34.9 488 106-646 455-1033(1172)
33 PTZ00429 beta-adaptin; Provisi 99.6 2.5E-10 5.5E-15 122.0 49.0 508 4-635 33-544 (746)
34 KOG0212 Uncharacterized conser 99.6 3E-11 6.5E-16 118.1 34.8 409 97-558 5-425 (675)
35 KOG0166 Karyopherin (importin) 99.5 1.5E-12 3.3E-17 129.1 19.9 362 133-540 68-440 (514)
36 KOG0915 Uncharacterized conser 99.5 3.5E-11 7.6E-16 130.3 31.2 500 37-619 817-1367(1702)
37 COG5181 HSH155 U2 snRNP splice 99.5 5.3E-11 1.1E-15 117.4 27.6 389 92-540 521-916 (975)
38 KOG0211 Protein phosphatase 2A 99.4 1.6E-09 3.5E-14 114.6 37.5 450 107-638 213-665 (759)
39 PRK13800 putative oxidoreducta 99.4 3.6E-11 7.8E-16 134.8 26.3 272 95-483 624-896 (897)
40 KOG0211 Protein phosphatase 2A 99.4 6.5E-10 1.4E-14 117.5 33.9 468 16-540 172-668 (759)
41 PF08506 Cse1: Cse1; InterPro 99.4 6E-11 1.3E-15 117.1 24.2 222 233-481 110-370 (370)
42 PRK09687 putative lyase; Provi 99.4 7.8E-11 1.7E-15 112.4 22.2 250 179-532 28-278 (280)
43 PRK13800 putative oxidoreducta 99.4 1.5E-10 3.2E-15 130.0 27.7 274 38-435 622-895 (897)
44 KOG0166 Karyopherin (importin) 99.4 4.8E-10 1E-14 111.7 27.0 387 52-487 79-487 (514)
45 PF10508 Proteasom_PSMB: Prote 99.4 4.3E-09 9.4E-14 110.0 34.4 355 97-487 43-421 (503)
46 KOG1991 Nuclear transport rece 99.3 7.3E-07 1.6E-11 94.1 49.4 451 36-539 297-803 (1010)
47 PRK09687 putative lyase; Provi 99.3 5.9E-10 1.3E-14 106.4 23.7 251 134-483 26-279 (280)
48 KOG1943 Beta-tubulin folding c 99.3 1.1E-07 2.4E-12 100.9 40.5 507 38-637 342-881 (1133)
49 COG5064 SRP1 Karyopherin (impo 99.3 4.6E-11 9.9E-16 109.6 13.6 362 133-539 73-446 (526)
50 PF10508 Proteasom_PSMB: Prote 99.3 2.4E-08 5.1E-13 104.5 35.5 386 1-441 1-422 (503)
51 KOG2020 Nuclear transport rece 99.3 7.9E-08 1.7E-12 105.0 39.6 143 4-162 11-164 (1041)
52 KOG1059 Vesicle coat complex A 99.2 2.9E-07 6.2E-12 93.4 34.7 193 85-289 137-365 (877)
53 KOG1060 Vesicle coat complex A 99.1 4.9E-07 1.1E-11 92.7 34.4 455 96-635 39-531 (968)
54 KOG1060 Vesicle coat complex A 99.1 6.8E-07 1.5E-11 91.7 33.7 433 4-539 72-536 (968)
55 KOG1240 Protein kinase contain 99.1 1.8E-08 4E-13 107.4 23.1 271 132-442 423-728 (1431)
56 PF03810 IBN_N: Importin-beta 99.1 4.7E-10 1E-14 85.0 7.8 76 23-102 1-76 (77)
57 KOG1061 Vesicle coat complex A 99.0 1.4E-06 3.1E-11 89.9 33.4 456 3-528 49-520 (734)
58 COG5064 SRP1 Karyopherin (impo 99.0 2.2E-08 4.7E-13 92.4 15.6 318 41-442 75-401 (526)
59 KOG1943 Beta-tubulin folding c 99.0 4.1E-06 8.9E-11 89.4 34.3 475 87-640 336-840 (1133)
60 KOG1062 Vesicle coat complex A 99.0 1.9E-05 4.2E-10 81.8 37.6 357 85-489 135-547 (866)
61 KOG1248 Uncharacterized conser 98.9 0.00018 4E-09 78.2 48.4 261 357-648 644-910 (1176)
62 KOG1240 Protein kinase contain 98.9 6.5E-07 1.4E-11 96.0 25.2 305 176-507 424-745 (1431)
63 PF12755 Vac14_Fab1_bd: Vacuol 98.9 1.1E-08 2.3E-13 79.5 8.9 93 383-485 2-95 (97)
64 KOG1248 Uncharacterized conser 98.9 2.7E-06 5.8E-11 91.8 29.5 364 106-517 531-924 (1176)
65 KOG4535 HEAT and armadillo rep 98.9 3E-06 6.4E-11 82.2 26.5 439 105-560 9-585 (728)
66 COG5240 SEC21 Vesicle coat com 98.9 2.3E-05 5E-10 77.9 32.6 274 172-485 262-554 (898)
67 PF12348 CLASP_N: CLASP N term 98.9 2.5E-07 5.4E-12 87.1 18.8 183 229-442 17-209 (228)
68 KOG1020 Sister chromatid cohes 98.9 0.00037 8E-09 77.5 44.5 407 95-540 819-1258(1692)
69 KOG1062 Vesicle coat complex A 98.8 0.00029 6.2E-09 73.4 40.9 432 87-641 102-548 (866)
70 PF12460 MMS19_C: RNAPII trans 98.8 1E-05 2.3E-10 83.0 28.6 200 343-555 204-413 (415)
71 PF12348 CLASP_N: CLASP N term 98.8 1.8E-07 4E-12 88.0 14.6 183 341-543 19-213 (228)
72 KOG1059 Vesicle coat complex A 98.7 0.00026 5.7E-09 72.6 36.2 253 220-541 145-403 (877)
73 KOG1020 Sister chromatid cohes 98.7 0.0003 6.5E-09 78.2 37.7 431 127-640 812-1257(1692)
74 KOG4224 Armadillo repeat prote 98.6 3.2E-06 7E-11 79.1 18.3 382 103-539 58-449 (550)
75 KOG4224 Armadillo repeat prote 98.6 2E-06 4.2E-11 80.5 16.4 387 96-540 89-497 (550)
76 KOG2259 Uncharacterized conser 98.6 0.00019 4.1E-09 72.9 30.7 267 217-542 196-517 (823)
77 PF12460 MMS19_C: RNAPII trans 98.5 0.0004 8.7E-09 71.4 32.4 222 389-648 169-405 (415)
78 PF12755 Vac14_Fab1_bd: Vacuol 98.5 4.5E-07 9.8E-12 70.5 7.4 90 345-437 2-94 (97)
79 COG5240 SEC21 Vesicle coat com 98.5 9.8E-05 2.1E-09 73.6 24.6 293 87-438 259-554 (898)
80 PF13513 HEAT_EZ: HEAT-like re 98.5 2E-07 4.3E-12 64.9 4.6 55 381-437 1-55 (55)
81 PF08389 Xpo1: Exportin 1-like 98.5 4.5E-07 9.9E-12 78.9 8.0 131 106-243 2-148 (148)
82 KOG2956 CLIP-associating prote 98.5 9.8E-06 2.1E-10 78.8 17.4 201 412-651 289-492 (516)
83 KOG1992 Nuclear export recepto 98.5 0.0034 7.3E-08 65.9 41.1 501 9-594 94-672 (960)
84 cd00020 ARM Armadillo/beta-cat 98.4 6.3E-07 1.4E-11 74.8 7.0 110 368-486 8-120 (120)
85 KOG1058 Vesicle coat complex C 98.4 0.0045 9.8E-08 64.3 34.6 316 92-487 99-426 (948)
86 KOG1077 Vesicle coat complex A 98.3 0.0011 2.4E-08 68.1 28.4 332 133-553 113-450 (938)
87 KOG1061 Vesicle coat complex A 98.3 0.00066 1.4E-08 70.8 26.7 403 7-485 90-527 (734)
88 KOG1410 Nuclear transport rece 98.3 0.0082 1.8E-07 61.6 51.4 144 4-162 6-159 (1082)
89 PF14500 MMS19_N: Dos2-interac 98.3 0.00046 9.9E-09 65.2 22.7 246 135-416 3-257 (262)
90 KOG1078 Vesicle coat complex C 98.2 0.0084 1.8E-07 62.8 32.8 123 341-486 404-532 (865)
91 KOG1820 Microtubule-associated 98.2 0.00013 2.8E-09 78.8 19.7 210 361-611 247-459 (815)
92 KOG2021 Nuclear mRNA export fa 98.1 0.019 4.2E-07 59.9 45.2 518 30-589 182-819 (980)
93 KOG1058 Vesicle coat complex C 98.1 0.02 4.4E-07 59.7 31.3 307 86-442 128-466 (948)
94 KOG4413 26S proteasome regulat 98.0 0.0019 4.2E-08 60.2 21.3 295 112-441 63-379 (524)
95 PF13646 HEAT_2: HEAT repeats; 98.0 3.5E-05 7.6E-10 59.9 9.0 84 370-482 2-88 (88)
96 PF12717 Cnd1: non-SMC mitotic 97.9 0.00058 1.3E-08 60.9 16.2 133 144-289 1-139 (178)
97 KOG2259 Uncharacterized conser 97.9 0.001 2.3E-08 67.8 19.2 248 343-641 212-515 (823)
98 KOG1993 Nuclear transport rece 97.9 0.04 8.7E-07 58.0 35.0 264 18-290 412-689 (978)
99 KOG2956 CLIP-associating prote 97.9 0.0008 1.7E-08 66.0 17.6 191 220-442 288-480 (516)
100 PF05804 KAP: Kinesin-associat 97.9 0.019 4.1E-07 61.9 29.5 346 219-638 290-650 (708)
101 PF13513 HEAT_EZ: HEAT-like re 97.9 1.2E-05 2.6E-10 55.9 3.4 54 424-484 1-55 (55)
102 KOG2032 Uncharacterized conser 97.9 0.0089 1.9E-07 59.3 23.6 169 361-546 211-381 (533)
103 KOG4535 HEAT and armadillo rep 97.8 0.042 9.2E-07 54.4 33.0 156 422-594 496-657 (728)
104 COG5096 Vesicle coat complex, 97.8 0.075 1.6E-06 57.1 39.0 138 4-161 56-196 (757)
105 KOG2274 Predicted importin 9 [ 97.8 0.082 1.8E-06 56.7 39.6 224 378-641 502-738 (1005)
106 PF14500 MMS19_N: Dos2-interac 97.8 0.0023 5.1E-08 60.5 17.9 238 372-648 4-249 (262)
107 KOG4653 Uncharacterized conser 97.8 0.0011 2.5E-08 69.6 16.9 200 411-649 729-930 (982)
108 COG1413 FOG: HEAT repeat [Ener 97.8 0.046 1E-06 54.8 28.4 279 37-436 43-332 (335)
109 PF04826 Arm_2: Armadillo-like 97.7 0.00091 2E-08 62.7 14.2 217 378-628 24-253 (254)
110 PF13001 Ecm29: Proteasome sta 97.7 0.088 1.9E-06 55.5 30.2 381 5-436 25-485 (501)
111 PF12717 Cnd1: non-SMC mitotic 97.7 0.004 8.7E-08 55.6 17.5 99 52-167 1-99 (178)
112 KOG2032 Uncharacterized conser 97.7 0.014 3.1E-07 57.9 22.2 135 110-251 232-374 (533)
113 PF04826 Arm_2: Armadillo-like 97.7 0.002 4.4E-08 60.4 16.0 188 36-249 11-206 (254)
114 KOG1820 Microtubule-associated 97.7 0.0023 5E-08 69.5 18.3 187 342-550 266-458 (815)
115 PF05918 API5: Apoptosis inhib 97.7 0.004 8.7E-08 64.3 19.1 157 95-271 26-189 (556)
116 KOG2022 Nuclear transport rece 97.7 0.12 2.6E-06 55.4 34.0 356 233-638 481-868 (982)
117 KOG1077 Vesicle coat complex A 97.7 0.1 2.2E-06 54.4 36.3 62 227-290 337-399 (938)
118 PF08167 RIX1: rRNA processing 97.6 0.0016 3.4E-08 57.1 13.2 140 404-555 20-162 (165)
119 cd00020 ARM Armadillo/beta-cat 97.6 0.00021 4.6E-09 59.4 7.5 95 343-439 21-120 (120)
120 PLN03076 ARF guanine nucleotid 97.6 0.049 1.1E-06 64.8 28.7 195 51-256 1149-1384(1780)
121 PF02985 HEAT: HEAT repeat; I 97.6 0.00013 2.8E-09 43.4 4.3 30 410-440 1-30 (31)
122 PF13646 HEAT_2: HEAT repeats; 97.6 0.00072 1.6E-08 52.5 9.5 76 342-435 13-88 (88)
123 TIGR02270 conserved hypothetic 97.6 0.031 6.7E-07 56.7 23.1 57 409-486 240-296 (410)
124 PF05804 KAP: Kinesin-associat 97.6 0.037 7.9E-07 59.8 24.7 345 36-440 289-650 (708)
125 KOG1967 DNA repair/transcripti 97.5 0.0018 3.8E-08 68.8 14.3 150 92-245 867-1021(1030)
126 KOG2025 Chromosome condensatio 97.5 0.013 2.7E-07 60.8 19.8 111 85-202 78-190 (892)
127 PLN03076 ARF guanine nucleotid 97.5 0.072 1.6E-06 63.5 28.4 324 128-468 1130-1512(1780)
128 KOG4413 26S proteasome regulat 97.5 0.0077 1.7E-07 56.3 16.5 255 348-639 62-335 (524)
129 TIGR02270 conserved hypothetic 97.5 0.066 1.4E-06 54.3 24.7 241 93-439 55-296 (410)
130 KOG0414 Chromosome condensatio 97.5 0.26 5.7E-06 54.7 35.7 121 351-487 899-1028(1251)
131 COG5096 Vesicle coat complex, 97.5 0.23 4.9E-06 53.6 30.1 166 187-397 30-196 (757)
132 KOG0168 Putative ubiquitin fus 97.5 0.12 2.5E-06 55.2 25.8 117 133-254 169-290 (1051)
133 COG1413 FOG: HEAT repeat [Ener 97.4 0.044 9.5E-07 55.0 22.9 109 344-486 195-304 (335)
134 COG5656 SXM1 Importin, protein 97.4 0.23 5E-06 52.2 41.2 389 81-510 335-776 (970)
135 KOG1967 DNA repair/transcripti 97.4 0.0012 2.5E-08 70.1 11.1 180 96-282 819-1017(1030)
136 PF05004 IFRD: Interferon-rela 97.4 0.023 4.9E-07 55.5 19.4 210 411-640 45-260 (309)
137 KOG1078 Vesicle coat complex C 97.4 0.25 5.5E-06 52.3 36.6 243 347-636 263-531 (865)
138 PF05918 API5: Apoptosis inhib 97.4 0.25 5.5E-06 51.5 29.2 304 231-596 34-347 (556)
139 PF02985 HEAT: HEAT repeat; I 97.4 0.00024 5.2E-09 42.1 3.2 31 368-398 1-31 (31)
140 PF05004 IFRD: Interferon-rela 97.3 0.065 1.4E-06 52.4 21.1 193 97-290 48-258 (309)
141 KOG4653 Uncharacterized conser 97.3 0.028 6E-07 59.8 19.2 208 51-281 739-956 (982)
142 KOG1517 Guanine nucleotide bin 97.2 0.052 1.1E-06 59.0 20.8 149 381-539 571-735 (1387)
143 KOG0414 Chromosome condensatio 97.2 0.55 1.2E-05 52.3 33.9 150 6-162 273-430 (1251)
144 KOG2025 Chromosome condensatio 97.2 0.072 1.6E-06 55.5 20.5 195 194-435 60-255 (892)
145 PF08167 RIX1: rRNA processing 97.2 0.0089 1.9E-07 52.4 12.4 137 128-268 22-163 (165)
146 PF08506 Cse1: Cse1; InterPro 97.1 0.089 1.9E-06 52.7 20.7 133 470-631 224-369 (370)
147 COG5098 Chromosome condensatio 97.1 0.44 9.6E-06 49.8 26.1 128 349-486 282-415 (1128)
148 PF11865 DUF3385: Domain of un 97.1 0.0086 1.9E-07 52.0 11.6 126 498-639 2-159 (160)
149 PF10521 DUF2454: Protein of u 97.1 0.028 6E-07 54.4 16.3 175 380-558 88-275 (282)
150 PF13251 DUF4042: Domain of un 97.1 0.0055 1.2E-07 53.9 10.3 142 107-250 1-176 (182)
151 KOG0168 Putative ubiquitin fus 97.0 0.22 4.7E-06 53.2 22.4 213 380-626 181-398 (1051)
152 PF13251 DUF4042: Domain of un 97.0 0.019 4.1E-07 50.6 12.5 150 382-539 1-177 (182)
153 KOG1293 Proteins containing ar 97.0 0.61 1.3E-05 48.6 27.9 143 380-538 390-535 (678)
154 KOG2549 Transcription initiati 96.9 0.027 5.9E-07 56.9 14.5 155 221-397 209-371 (576)
155 KOG0392 SNF2 family DNA-depend 96.9 1.1 2.3E-05 50.5 31.0 151 37-205 77-237 (1549)
156 COG5218 YCG1 Chromosome conden 96.9 0.064 1.4E-06 54.5 16.6 179 4-201 12-195 (885)
157 KOG4524 Uncharacterized conser 96.9 0.44 9.6E-06 51.9 23.7 90 373-469 809-900 (1014)
158 PF01603 B56: Protein phosphat 96.8 0.084 1.8E-06 54.0 17.8 230 5-256 135-378 (409)
159 KOG1243 Protein kinase [Genera 96.8 0.035 7.6E-07 57.9 14.8 189 218-442 329-518 (690)
160 cd00256 VATPase_H VATPase_H, r 96.8 0.42 9.1E-06 48.5 22.0 203 34-249 50-259 (429)
161 KOG0946 ER-Golgi vesicle-tethe 96.8 0.95 2.1E-05 48.2 28.1 156 130-290 21-196 (970)
162 PF11865 DUF3385: Domain of un 96.8 0.019 4.1E-07 49.9 11.1 150 407-591 8-158 (160)
163 KOG0891 DNA-dependent protein 96.8 2.3 5E-05 52.5 31.3 439 130-651 479-934 (2341)
164 PF12719 Cnd3: Nuclear condens 96.8 0.19 4.1E-06 49.2 19.2 111 131-249 26-144 (298)
165 PF03378 CAS_CSE1: CAS/CSE pro 96.8 0.028 6E-07 57.6 13.5 135 493-640 15-149 (435)
166 PF03378 CAS_CSE1: CAS/CSE pro 96.7 0.14 3.1E-06 52.5 18.1 232 382-643 45-278 (435)
167 KOG1517 Guanine nucleotide bin 96.7 0.12 2.5E-06 56.5 17.7 196 32-250 467-673 (1387)
168 PF12719 Cnd3: Nuclear condens 96.6 0.18 3.8E-06 49.4 18.0 111 91-205 26-143 (298)
169 PF10274 ParcG: Parkin co-regu 96.6 0.017 3.6E-07 50.4 9.4 129 456-595 36-169 (183)
170 KOG2933 Uncharacterized conser 96.6 0.016 3.5E-07 54.1 9.7 154 341-513 100-257 (334)
171 PF04510 DUF577: Family of unk 96.5 0.25 5.4E-06 42.3 15.2 153 92-249 3-165 (174)
172 KOG1525 Sister chromatid cohes 96.4 2.9 6.2E-05 48.6 35.4 176 220-427 260-441 (1266)
173 PF10274 ParcG: Parkin co-regu 96.3 0.045 9.7E-07 47.8 10.1 125 408-542 37-170 (183)
174 PF08064 UME: UME (NUC010) dom 96.3 0.065 1.4E-06 42.9 10.4 101 498-618 5-106 (107)
175 smart00802 UME Domain in UVSB 96.3 0.067 1.5E-06 42.5 10.0 100 497-617 4-105 (107)
176 KOG2160 Armadillo/beta-catenin 96.2 0.097 2.1E-06 50.4 12.8 146 379-541 95-245 (342)
177 KOG0392 SNF2 family DNA-depend 96.0 0.065 1.4E-06 59.4 11.7 173 346-540 750-929 (1549)
178 KOG2160 Armadillo/beta-catenin 96.0 0.78 1.7E-05 44.4 17.7 176 13-205 93-282 (342)
179 KOG1949 Uncharacterized conser 96.0 0.24 5.3E-06 51.7 14.7 150 93-249 175-332 (1005)
180 KOG1949 Uncharacterized conser 95.9 0.26 5.7E-06 51.4 14.6 204 78-287 111-329 (1005)
181 KOG2062 26S proteasome regulat 95.8 2.1 4.5E-05 45.5 20.8 88 343-435 603-692 (929)
182 KOG2933 Uncharacterized conser 95.7 0.66 1.4E-05 43.8 15.4 182 218-432 87-270 (334)
183 KOG4500 Rho/Rac GTPase guanine 95.7 2.4 5.2E-05 42.0 22.5 346 99-486 49-431 (604)
184 cd08050 TAF6 TATA Binding Prot 95.7 0.21 4.6E-06 49.6 13.1 84 313-396 251-340 (343)
185 PF08767 CRM1_C: CRM1 C termin 95.7 0.065 1.4E-06 52.7 9.3 151 472-641 42-198 (319)
186 PF01603 B56: Protein phosphat 95.6 3.1 6.8E-05 42.7 23.1 227 96-359 137-371 (409)
187 PF12231 Rif1_N: Rap1-interact 95.6 3 6.4E-05 42.3 23.0 220 52-289 59-303 (372)
188 PF10521 DUF2454: Protein of u 95.6 0.31 6.6E-06 47.2 13.6 146 127-272 115-277 (282)
189 KOG2062 26S proteasome regulat 95.6 0.27 5.9E-06 51.7 13.5 123 367-517 555-678 (929)
190 COG5095 TAF6 Transcription ini 95.6 0.62 1.4E-05 43.5 14.4 116 420-557 208-337 (450)
191 KOG2759 Vacuolar H+-ATPase V1 95.6 2.8 6E-05 41.6 23.3 203 36-250 64-273 (442)
192 KOG0567 HEAT repeat-containing 95.5 2 4.4E-05 39.7 18.2 75 344-437 202-278 (289)
193 COG5116 RPN2 26S proteasome re 95.5 0.24 5.3E-06 50.3 12.4 122 368-517 553-675 (926)
194 PF08064 UME: UME (NUC010) dom 95.4 0.21 4.6E-06 39.9 9.7 64 578-649 32-96 (107)
195 KOG2137 Protein kinase [Signal 95.4 1.3 2.9E-05 46.9 17.7 146 129-287 347-494 (700)
196 KOG2213 Apoptosis inhibitor 5/ 95.3 3.1 6.8E-05 40.7 22.9 237 51-332 36-295 (460)
197 KOG1822 Uncharacterized conser 95.3 1.5 3.2E-05 51.7 19.1 134 408-558 875-1010(2067)
198 PF11864 DUF3384: Domain of un 95.2 4.9 0.00011 42.2 35.3 288 146-485 5-329 (464)
199 KOG2549 Transcription initiati 95.2 0.76 1.6E-05 46.9 14.8 155 344-514 222-393 (576)
200 KOG1293 Proteins containing ar 95.2 0.78 1.7E-05 47.8 15.2 144 104-250 389-535 (678)
201 PF01347 Vitellogenin_N: Lipop 95.0 4.2 9E-05 44.8 21.7 106 345-481 506-617 (618)
202 PF13001 Ecm29: Proteasome sta 94.9 3.6 7.8E-05 43.6 20.1 216 50-286 248-485 (501)
203 KOG0891 DNA-dependent protein 94.9 14 0.00031 46.1 33.5 441 92-617 481-941 (2341)
204 PF04118 Dopey_N: Dopey, N-ter 94.9 1.2 2.7E-05 43.1 15.1 153 479-653 30-183 (307)
205 PF03224 V-ATPase_H_N: V-ATPas 94.9 0.14 3E-06 50.6 9.0 208 34-252 52-273 (312)
206 KOG0567 HEAT repeat-containing 94.8 3.4 7.4E-05 38.3 20.1 262 40-396 6-280 (289)
207 KOG0413 Uncharacterized conser 94.8 8.2 0.00018 42.6 31.6 181 97-287 477-683 (1529)
208 KOG1525 Sister chromatid cohes 94.8 11 0.00024 44.0 38.6 366 93-515 49-435 (1266)
209 KOG1243 Protein kinase [Genera 94.7 0.13 2.7E-06 54.0 8.3 186 38-250 331-517 (690)
210 PF14664 RICTOR_N: Rapamycin-i 94.7 4 8.7E-05 41.1 18.6 222 11-250 33-271 (371)
211 COG5218 YCG1 Chromosome conden 94.6 6.6 0.00014 40.7 21.3 115 171-289 46-161 (885)
212 smart00802 UME Domain in UVSB 94.6 0.44 9.6E-06 37.9 9.3 62 578-647 32-94 (107)
213 PF10363 DUF2435: Protein of u 94.5 0.55 1.2E-05 36.2 9.5 75 176-255 5-79 (92)
214 COG5095 TAF6 Transcription ini 94.5 1.3 2.9E-05 41.4 13.3 138 455-619 198-339 (450)
215 PF10363 DUF2435: Protein of u 94.3 0.65 1.4E-05 35.8 9.5 80 373-469 9-88 (92)
216 KOG2137 Protein kinase [Signal 94.3 0.71 1.5E-05 48.9 12.5 169 90-268 347-516 (700)
217 PF12054 DUF3535: Domain of un 94.2 3 6.5E-05 43.1 17.0 99 342-441 100-210 (441)
218 KOG2149 Uncharacterized conser 94.1 1.2 2.6E-05 43.9 12.8 131 131-266 58-188 (393)
219 PF12231 Rif1_N: Rap1-interact 93.9 8.1 0.00017 39.2 32.9 283 144-485 59-351 (372)
220 PF14664 RICTOR_N: Rapamycin-i 93.9 8 0.00017 39.0 22.9 123 127-255 21-144 (371)
221 COG5116 RPN2 26S proteasome re 93.8 0.68 1.5E-05 47.3 10.9 146 371-554 520-668 (926)
222 PF08767 CRM1_C: CRM1 C termin 93.6 5.1 0.00011 39.5 16.7 170 147-331 43-225 (319)
223 KOG0803 Predicted E3 ubiquitin 93.4 11 0.00024 44.1 20.9 103 178-283 45-147 (1312)
224 PF00514 Arm: Armadillo/beta-c 93.4 0.18 4E-06 32.0 4.3 28 410-438 13-40 (41)
225 KOG2149 Uncharacterized conser 93.3 1.7 3.7E-05 42.8 12.5 132 411-558 60-192 (393)
226 PF12054 DUF3535: Domain of un 93.3 8.4 0.00018 39.9 18.4 76 53-143 101-180 (441)
227 COG5098 Chromosome condensatio 93.1 6 0.00013 41.9 16.4 165 36-205 239-415 (1128)
228 cd08050 TAF6 TATA Binding Prot 93.1 7.8 0.00017 38.7 17.3 90 524-622 234-323 (343)
229 KOG0889 Histone acetyltransfer 92.9 37 0.0008 43.7 37.5 292 321-636 985-1305(3550)
230 KOG1851 Uncharacterized conser 92.8 25 0.00053 41.4 33.2 172 348-540 1506-1682(1710)
231 PF08623 TIP120: TATA-binding 92.8 4.5 9.7E-05 35.2 13.1 130 453-595 4-152 (169)
232 PF08623 TIP120: TATA-binding 92.3 0.62 1.3E-05 40.4 7.2 78 187-269 38-115 (169)
233 PF01347 Vitellogenin_N: Lipop 91.7 24 0.00052 38.9 22.9 122 105-245 448-586 (618)
234 PF07571 DUF1546: Protein of u 91.5 0.52 1.1E-05 36.5 5.4 57 340-396 17-78 (92)
235 smart00638 LPD_N Lipoprotein N 91.4 25 0.00054 38.3 20.3 159 349-539 376-545 (574)
236 PF04118 Dopey_N: Dopey, N-ter 91.3 15 0.00033 35.8 23.6 163 106-289 3-167 (307)
237 PF03224 V-ATPase_H_N: V-ATPas 91.1 16 0.00034 36.1 16.9 88 410-513 106-200 (312)
238 PF08569 Mo25: Mo25-like; Int 91.0 17 0.00038 35.9 18.6 151 131-290 76-239 (335)
239 PF11864 DUF3384: Domain of un 90.6 25 0.00054 37.0 34.4 206 18-248 5-244 (464)
240 PF11698 V-ATPase_H_C: V-ATPas 90.5 1 2.2E-05 36.4 6.3 70 131-205 43-115 (119)
241 KOG0929 Guanine nucleotide exc 90.4 22 0.00049 41.9 18.7 229 105-364 1050-1304(1514)
242 PF12530 DUF3730: Protein of u 90.0 17 0.00036 34.1 19.8 193 14-233 12-217 (234)
243 PF12830 Nipped-B_C: Sister ch 89.7 5.2 0.00011 35.9 11.1 80 176-263 10-89 (187)
244 cd00256 VATPase_H VATPase_H, r 89.7 26 0.00057 35.9 24.6 143 139-289 109-258 (429)
245 KOG1048 Neural adherens juncti 88.5 41 0.00089 36.6 19.0 68 2-71 232-307 (717)
246 KOG2081 Nuclear transport regu 88.1 36 0.00079 35.5 33.0 320 132-507 200-552 (559)
247 KOG3961 Uncharacterized conser 87.8 2.4 5.3E-05 37.6 7.1 94 456-559 112-209 (262)
248 KOG1822 Uncharacterized conser 87.8 74 0.0016 38.7 25.6 233 372-637 881-1127(2067)
249 cd03561 VHS VHS domain family; 87.7 9.2 0.0002 32.1 10.6 82 455-541 34-117 (133)
250 KOG1048 Neural adherens juncti 87.6 47 0.001 36.2 19.6 122 408-539 517-644 (717)
251 PF00514 Arm: Armadillo/beta-c 87.5 1.3 2.7E-05 28.1 4.1 29 457-485 11-40 (41)
252 smart00638 LPD_N Lipoprotein N 87.4 48 0.001 36.1 22.5 133 95-245 396-542 (574)
253 KOG2213 Apoptosis inhibitor 5/ 87.2 33 0.00071 34.0 18.2 133 106-246 38-178 (460)
254 PF05536 Neurochondrin: Neuroc 87.2 46 0.001 35.7 30.0 189 343-540 71-265 (543)
255 PF08389 Xpo1: Exportin 1-like 87.1 1.9 4.1E-05 36.9 6.4 65 407-481 80-148 (148)
256 PF12830 Nipped-B_C: Sister ch 87.1 5.6 0.00012 35.7 9.5 70 95-167 11-80 (187)
257 KOG0889 Histone acetyltransfer 87.0 1.1E+02 0.0024 39.9 32.4 348 170-541 717-1160(3550)
258 PF05536 Neurochondrin: Neuroc 86.9 48 0.001 35.6 29.8 241 130-398 4-263 (543)
259 PF14668 RICTOR_V: Rapamycin-i 86.6 2.6 5.5E-05 30.8 5.6 56 383-441 3-60 (73)
260 PF12765 Cohesin_HEAT: HEAT re 85.9 1.9 4E-05 27.6 4.1 41 390-434 2-42 (42)
261 KOG4524 Uncharacterized conser 85.7 66 0.0014 36.1 40.3 94 503-617 802-898 (1014)
262 PF12397 U3snoRNP10: U3 small 85.7 18 0.0004 29.6 11.3 74 363-441 2-76 (121)
263 PF08569 Mo25: Mo25-like; Int 85.6 40 0.00086 33.5 27.9 185 97-290 81-284 (335)
264 PF11919 DUF3437: Domain of un 85.6 1.7 3.7E-05 33.3 4.5 57 382-441 4-60 (90)
265 PF04078 Rcd1: Cell differenti 85.1 10 0.00022 35.5 10.0 73 131-205 95-168 (262)
266 smart00185 ARM Armadillo/beta- 84.9 1.5 3.2E-05 27.5 3.5 28 410-438 13-40 (41)
267 KOG0803 Predicted E3 ubiquitin 84.7 84 0.0018 37.3 19.0 103 374-484 48-151 (1312)
268 cd03561 VHS VHS domain family; 84.5 19 0.00041 30.2 10.8 75 408-489 36-115 (133)
269 PF11701 UNC45-central: Myosin 84.0 2.9 6.3E-05 36.3 5.9 130 344-483 20-156 (157)
270 cd03568 VHS_STAM VHS domain fa 83.9 21 0.00045 30.4 10.8 76 408-489 36-113 (144)
271 PF12397 U3snoRNP10: U3 small 83.2 13 0.00028 30.5 9.3 73 405-487 2-75 (121)
272 PF11698 V-ATPase_H_C: V-ATPas 83.1 3.1 6.6E-05 33.7 5.1 75 36-122 42-116 (119)
273 KOG4199 Uncharacterized conser 83.0 48 0.001 32.2 21.6 212 409-650 189-416 (461)
274 PF09324 DUF1981: Domain of un 83.0 17 0.00037 27.7 9.0 56 229-284 28-83 (86)
275 KOG1848 Uncharacterized conser 82.9 1.1E+02 0.0023 36.1 18.4 227 50-287 853-1130(1610)
276 cd03568 VHS_STAM VHS domain fa 82.4 30 0.00064 29.5 11.5 74 367-442 37-113 (144)
277 PF07571 DUF1546: Protein of u 81.9 7 0.00015 30.2 6.6 61 378-440 17-79 (92)
278 PF11935 DUF3453: Domain of un 81.8 46 0.001 31.3 14.4 114 140-256 2-153 (239)
279 PF12333 Ipi1_N: Rix1 complex 81.6 4.3 9.4E-05 32.1 5.5 61 401-468 3-63 (102)
280 PF12530 DUF3730: Protein of u 81.5 47 0.001 31.1 21.0 204 227-468 9-213 (234)
281 PF08161 NUC173: NUC173 domain 81.1 6.5 0.00014 35.5 7.2 67 580-652 19-86 (198)
282 cd03569 VHS_Hrs_Vps27p VHS dom 81.1 33 0.00072 29.1 11.1 76 408-489 40-117 (142)
283 PF08713 DNA_alkylation: DNA a 80.9 9.7 0.00021 35.0 8.7 89 341-442 98-187 (213)
284 cd03567 VHS_GGA VHS domain fam 80.7 34 0.00073 28.9 10.9 99 375-489 13-119 (139)
285 PF12333 Ipi1_N: Rix1 complex 80.7 5.6 0.00012 31.5 5.9 63 495-560 2-65 (102)
286 PF12765 Cohesin_HEAT: HEAT re 80.5 2.8 6.1E-05 26.7 3.3 41 154-200 2-42 (42)
287 PF04388 Hamartin: Hamartin pr 80.5 67 0.0014 35.5 15.9 154 3-184 4-162 (668)
288 PF04388 Hamartin: Hamartin pr 79.6 36 0.00079 37.5 13.5 95 128-228 67-161 (668)
289 PF14868 DUF4487: Domain of un 79.1 96 0.0021 33.2 24.5 55 345-399 496-555 (559)
290 PF14631 FancD2: Fanconi anaem 78.9 1.6E+02 0.0036 35.8 29.3 116 403-539 429-545 (1426)
291 cd03567 VHS_GGA VHS domain fam 78.5 40 0.00086 28.5 11.1 74 367-442 38-119 (139)
292 PF00790 VHS: VHS domain; Int 78.4 40 0.00087 28.5 12.0 81 453-540 37-122 (140)
293 smart00288 VHS Domain present 78.3 34 0.00074 28.6 10.2 80 454-540 33-115 (133)
294 PF08146 BP28CT: BP28CT (NUC21 78.3 19 0.00042 31.0 8.9 84 522-620 36-120 (153)
295 PF09324 DUF1981: Domain of un 77.8 15 0.00032 28.0 7.2 65 93-157 18-85 (86)
296 KOG1851 Uncharacterized conser 77.1 50 0.0011 39.1 13.7 150 36-203 1525-1676(1710)
297 smart00288 VHS Domain present 77.1 26 0.00057 29.3 9.2 79 129-208 35-114 (133)
298 cd00197 VHS_ENTH_ANTH VHS, ENT 76.9 19 0.00042 29.2 8.2 75 363-438 33-114 (115)
299 PF12074 DUF3554: Domain of un 76.6 86 0.0019 31.4 16.7 156 91-254 60-241 (339)
300 cd06561 AlkD_like A new struct 76.6 29 0.00063 31.3 10.3 65 370-442 108-173 (197)
301 KOG2011 Sister chromatid cohes 76.4 1.5E+02 0.0033 34.1 19.4 73 171-249 283-356 (1048)
302 KOG0929 Guanine nucleotide exc 75.9 1.4E+02 0.0031 35.8 17.0 135 501-646 1171-1307(1514)
303 KOG0413 Uncharacterized conser 75.9 1.5E+02 0.0032 33.6 36.6 90 424-537 945-1036(1529)
304 cd03569 VHS_Hrs_Vps27p VHS dom 75.3 28 0.00062 29.5 9.0 78 129-208 39-117 (142)
305 PF00790 VHS: VHS domain; Int 74.6 52 0.0011 27.8 12.6 97 500-613 38-136 (140)
306 PF04510 DUF577: Family of unk 74.1 48 0.001 28.9 9.8 137 410-562 4-144 (174)
307 PF11935 DUF3453: Domain of un 73.6 65 0.0014 30.3 11.9 130 420-555 3-160 (239)
308 KOG2199 Signal transducing ada 73.1 41 0.0009 33.3 10.2 104 374-490 19-122 (462)
309 KOG3036 Protein involved in ce 72.9 65 0.0014 29.9 10.8 116 132-249 125-248 (293)
310 cd03565 VHS_Tom1 VHS domain fa 72.3 42 0.00091 28.4 9.3 96 501-613 35-133 (141)
311 PF03130 HEAT_PBS: PBS lyase H 72.1 4.4 9.6E-05 22.8 2.3 14 426-439 1-14 (27)
312 smart00567 EZ_HEAT E-Z type HE 71.7 8.7 0.00019 22.1 3.6 15 381-395 1-15 (30)
313 KOG1877 Putative transmembrane 71.5 1.7E+02 0.0036 32.7 15.4 82 164-250 47-128 (819)
314 cd03572 ENTH_epsin_related ENT 71.3 24 0.00052 28.9 7.2 76 127-204 34-118 (122)
315 KOG2973 Uncharacterized conser 71.1 25 0.00054 33.7 8.1 67 412-487 6-72 (353)
316 PF11701 UNC45-central: Myosin 70.0 12 0.00026 32.4 5.7 129 143-283 17-153 (157)
317 KOG1848 Uncharacterized conser 69.9 2.4E+02 0.0052 33.5 21.3 151 104-256 854-1034(1610)
318 COG4912 Predicted DNA alkylati 69.7 34 0.00074 31.1 8.4 81 352-440 102-184 (222)
319 PF08146 BP28CT: BP28CT (NUC21 69.3 74 0.0016 27.4 11.3 111 472-590 36-147 (153)
320 PF12074 DUF3554: Domain of un 68.8 1.3E+02 0.0028 30.1 22.6 94 172-271 20-118 (339)
321 PF12783 Sec7_N: Guanine nucle 67.9 84 0.0018 27.5 12.3 102 189-290 35-147 (168)
322 KOG2011 Sister chromatid cohes 67.7 1.7E+02 0.0037 33.7 14.8 137 141-288 297-434 (1048)
323 KOG4500 Rho/Rac GTPase guanine 66.6 1.5E+02 0.0033 30.1 25.8 314 94-434 89-426 (604)
324 KOG2256 Predicted protein invo 66.0 2E+02 0.0043 31.0 17.7 76 423-511 255-331 (661)
325 KOG2229 Protein required for a 65.8 1.7E+02 0.0038 30.4 22.0 133 142-287 31-164 (616)
326 PF14222 MOR2-PAG1_N: Cell mor 65.5 2E+02 0.0044 31.0 28.3 298 96-398 133-502 (552)
327 cd07064 AlkD_like_1 A new stru 65.5 90 0.0019 28.6 10.7 66 367-441 115-181 (208)
328 cd03572 ENTH_epsin_related ENT 65.0 77 0.0017 26.0 10.3 34 258-291 36-69 (122)
329 KOG3036 Protein involved in ce 62.6 1.3E+02 0.0029 28.0 12.1 141 146-289 94-247 (293)
330 KOG3961 Uncharacterized conser 62.6 30 0.00066 31.1 6.5 92 366-463 113-204 (262)
331 cd03565 VHS_Tom1 VHS domain fa 62.5 96 0.0021 26.3 12.1 81 455-541 35-120 (141)
332 KOG4199 Uncharacterized conser 62.4 1.6E+02 0.0035 28.8 31.5 307 128-484 105-442 (461)
333 PF03542 Tuberin: Tuberin; In 62.1 1.7E+02 0.0038 29.3 12.6 95 424-538 211-305 (356)
334 COG5234 CIN1 Beta-tubulin fold 60.8 1.2E+02 0.0026 32.8 11.4 278 193-509 176-507 (993)
335 KOG2973 Uncharacterized conser 59.2 51 0.0011 31.7 7.8 64 373-440 9-72 (353)
336 PF11919 DUF3437: Domain of un 58.6 25 0.00055 27.0 4.8 56 425-487 4-59 (90)
337 KOG2759 Vacuolar H+-ATPase V1 57.3 2.2E+02 0.0049 28.8 25.4 70 409-486 366-438 (442)
338 PF01465 GRIP: GRIP domain; I 57.1 26 0.00055 22.9 4.0 35 89-123 4-38 (46)
339 PF14225 MOR2-PAG1_C: Cell mor 56.5 1.9E+02 0.004 27.7 20.3 138 95-249 114-255 (262)
340 KOG2199 Signal transducing ada 56.3 1.4E+02 0.0031 29.8 10.4 75 366-442 44-121 (462)
341 KOG0946 ER-Golgi vesicle-tethe 54.8 3.4E+02 0.0074 30.2 39.9 200 4-206 23-242 (970)
342 PF03542 Tuberin: Tuberin; In 54.8 2.4E+02 0.0051 28.4 14.9 95 189-290 210-304 (356)
343 smart00185 ARM Armadillo/beta- 54.4 21 0.00046 22.0 3.4 25 134-158 15-39 (41)
344 cd00197 VHS_ENTH_ANTH VHS, ENT 54.4 89 0.0019 25.2 7.9 75 127-203 33-113 (115)
345 PF12612 TFCD_C: Tubulin foldi 54.2 1.7E+02 0.0036 26.4 13.7 109 90-205 5-116 (193)
346 COG5537 IRR1 Cohesin [Cell div 54.2 3E+02 0.0066 29.4 13.0 104 227-358 283-386 (740)
347 PF08161 NUC173: NUC173 domain 53.4 1.8E+02 0.0038 26.4 15.2 57 147-207 16-72 (198)
348 PF14225 MOR2-PAG1_C: Cell mor 52.3 2.2E+02 0.0047 27.2 24.3 186 364-595 61-259 (262)
349 KOG1222 Kinesin associated pro 51.7 1.7E+02 0.0037 30.2 10.3 134 114-256 524-671 (791)
350 KOG2753 Uncharacterized conser 51.6 2.4E+02 0.0053 27.6 15.9 77 455-540 62-139 (378)
351 PF12783 Sec7_N: Guanine nucle 51.5 1.7E+02 0.0036 25.6 12.4 103 521-638 36-147 (168)
352 PF07539 DRIM: Down-regulated 50.9 1E+02 0.0022 26.1 7.7 47 2-48 15-62 (141)
353 COG5231 VMA13 Vacuolar H+-ATPa 50.8 28 0.0006 33.5 4.7 73 131-206 356-429 (432)
354 KOG2256 Predicted protein invo 50.7 3.6E+02 0.0077 29.2 20.5 182 170-374 278-475 (661)
355 PF11707 Npa1: Ribosome 60S bi 50.6 2.7E+02 0.0058 27.7 16.2 155 133-289 58-237 (330)
356 PF10350 DUF2428: Putative dea 50.4 2.3E+02 0.005 26.9 15.4 178 428-619 65-251 (255)
357 PF11640 TAN: Telomere-length 49.3 1.4E+02 0.003 25.8 8.6 88 97-185 9-118 (155)
358 KOG2122 Beta-catenin-binding p 47.8 5.9E+02 0.013 30.9 16.7 225 51-288 363-600 (2195)
359 KOG2085 Serine/threonine prote 47.5 3.2E+02 0.0069 27.7 14.1 97 150-255 318-421 (457)
360 PF04078 Rcd1: Cell differenti 46.2 2.2E+02 0.0047 27.0 9.7 114 174-289 95-218 (262)
361 smart00755 Grip golgin-97, Ran 45.8 45 0.00098 21.8 3.8 34 89-123 3-36 (46)
362 KOG2122 Beta-catenin-binding p 45.8 6.4E+02 0.014 30.7 22.1 31 410-441 573-603 (2195)
363 COG5369 Uncharacterized conser 44.8 1.7E+02 0.0036 30.7 9.3 73 130-205 472-545 (743)
364 PF14222 MOR2-PAG1_N: Cell mor 43.2 4.6E+02 0.01 28.3 27.9 285 83-397 26-347 (552)
365 PF07539 DRIM: Down-regulated 43.0 1.6E+02 0.0035 24.9 7.8 30 128-157 14-43 (141)
366 KOG1087 Cytosolic sorting prot 40.3 1.8E+02 0.0038 30.4 9.0 78 456-540 36-116 (470)
367 PLN03205 ATR interacting prote 39.2 2.8E+02 0.006 27.9 9.5 95 110-205 302-401 (652)
368 KOG3613 Dopey and related pred 37.9 1.2E+02 0.0027 36.5 8.1 82 380-468 1500-1582(1749)
369 COG5101 CRM1 Importin beta-rel 37.9 5.6E+02 0.012 27.8 31.5 73 219-291 570-650 (1053)
370 cd00872 PI3Ka_I Phosphoinositi 36.7 69 0.0015 28.2 4.8 43 457-509 72-114 (171)
371 KOG2085 Serine/threonine prote 36.6 4.7E+02 0.01 26.6 17.8 88 392-487 324-415 (457)
372 COG5537 IRR1 Cohesin [Cell div 36.4 5.8E+02 0.012 27.5 15.5 98 94-205 277-386 (740)
373 KOG1087 Cytosolic sorting prot 35.9 4.5E+02 0.0098 27.6 11.1 101 100-208 13-115 (470)
374 PF11707 Npa1: Ribosome 60S bi 35.9 4.5E+02 0.0098 26.1 16.7 109 176-286 58-184 (330)
375 PF14676 FANCI_S2: FANCI solen 34.7 3.1E+02 0.0066 23.8 9.4 120 111-243 37-156 (158)
376 PF14961 BROMI: Broad-minded p 34.7 7.7E+02 0.017 29.2 13.2 73 131-208 161-234 (1296)
377 PF14676 FANCI_S2: FANCI solen 34.3 3.1E+02 0.0067 23.8 8.8 117 58-200 37-156 (158)
378 PF14668 RICTOR_V: Rapamycin-i 33.9 69 0.0015 23.5 3.6 52 346-397 4-59 (73)
379 PF14961 BROMI: Broad-minded p 32.7 1.6E+02 0.0035 34.3 7.8 68 95-162 164-233 (1296)
380 PF10193 Telomere_reg-2: Telom 31.4 2.3E+02 0.0051 22.9 6.7 87 455-547 4-90 (114)
381 PF14663 RasGEF_N_2: Rapamycin 30.2 1.2E+02 0.0027 24.5 5.0 33 407-440 6-38 (115)
382 PF09759 Atx10homo_assoc: Spin 30.0 96 0.0021 24.5 4.1 57 384-442 3-62 (102)
383 PF08713 DNA_alkylation: DNA a 28.9 4.4E+02 0.0096 23.9 15.5 149 17-204 33-183 (213)
384 COG5369 Uncharacterized conser 28.6 1.2E+02 0.0026 31.8 5.4 114 130-248 430-545 (743)
385 KOG1837 Uncharacterized conser 28.3 1.2E+03 0.026 28.7 32.8 102 523-647 1520-1621(1621)
386 cd06561 AlkD_like A new struct 27.9 3.6E+02 0.0078 24.1 8.4 75 177-260 108-182 (197)
387 cd03562 CID CID (CTD-Interacti 26.5 2.3E+02 0.005 22.7 6.1 72 366-439 36-108 (114)
388 PF06371 Drf_GBD: Diaphanous G 25.3 86 0.0019 27.9 3.7 30 130-159 157-186 (187)
389 cd03562 CID CID (CTD-Interacti 24.8 2.8E+02 0.006 22.3 6.2 69 130-202 36-105 (114)
390 cd00864 PI3Ka Phosphoinositide 24.1 1.9E+02 0.0042 24.9 5.3 77 408-509 38-114 (152)
391 PF13925 Katanin_con80: con80 24.0 2.2E+02 0.0047 24.9 5.7 51 111-162 45-100 (164)
392 PF08045 CDC14: Cell division 22.4 6.8E+02 0.015 23.8 9.2 100 185-285 100-203 (257)
393 PF07923 N1221: N1221-like pro 22.3 7.3E+02 0.016 24.1 12.7 46 80-125 48-93 (293)
394 cd07354 HN_L-delphilin-R1_like 22.3 3E+02 0.0065 20.5 5.0 47 2-48 5-52 (80)
395 cd07920 Pumilio Pumilio-family 22.3 7.5E+02 0.016 24.2 10.3 9 457-465 94-102 (322)
396 cd07920 Pumilio Pumilio-family 22.2 7.5E+02 0.016 24.2 10.5 7 479-485 167-173 (322)
397 PF14868 DUF4487: Domain of un 22.0 1E+03 0.022 25.8 23.6 278 345-640 244-555 (559)
398 PHA01351 putative minor struct 21.9 1.1E+03 0.023 26.0 12.0 26 532-557 125-150 (1070)
399 KOG4646 Uncharacterized conser 21.7 4.3E+02 0.0094 22.3 6.4 63 131-202 58-125 (173)
400 PF10835 DUF2573: Protein of u 21.6 3.4E+02 0.0074 20.0 5.4 57 36-99 9-68 (82)
401 PF06628 Catalase-rel: Catalas 21.4 3E+02 0.0065 19.7 5.1 41 78-118 13-54 (68)
402 PRK13689 hypothetical protein; 21.3 1.7E+02 0.0037 21.3 3.5 57 34-103 11-67 (75)
403 COG5209 RCD1 Uncharacterized p 21.2 6.6E+02 0.014 23.2 8.4 99 148-247 117-217 (315)
404 smart00145 PI3Ka Phosphoinosit 21.1 2.3E+02 0.0049 25.4 5.3 43 457-509 77-119 (184)
405 PF11841 DUF3361: Domain of un 21.0 5.6E+02 0.012 22.3 10.5 101 146-251 32-134 (160)
406 PF06786 UPF0253: Uncharacteri 20.8 1.9E+02 0.0041 20.1 3.5 49 582-636 5-59 (66)
407 PRK04964 hypothetical protein; 20.7 1.9E+02 0.0041 20.1 3.5 50 581-636 4-59 (66)
408 COG5231 VMA13 Vacuolar H+-ATPa 20.7 8.2E+02 0.018 24.1 18.7 53 385-439 375-428 (432)
No 1
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.2e-79 Score=600.19 Aligned_cols=632 Identities=49% Similarity=0.781 Sum_probs=582.1
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhc
Q 006201 3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRW 82 (657)
Q Consensus 3 ~~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~ 82 (657)
|++.++|.+..|||+.+|++|+.+|.+++.+|++.|+..|.++|.|.+.++..|..|++.|||.+..+....+.++..+|
T Consensus 1 ~~~~~~le~tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRW 80 (859)
T KOG1241|consen 1 MELLELLEKTLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRW 80 (859)
T ss_pred CcHHHHHHHHcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChh-HHHHHHHHHHHHhhh
Q 006201 83 LSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPH-TKQATLETLGYICEE 161 (657)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~-~~~~~l~~l~~i~~~ 161 (657)
..++.+.|++||..++..|.++.+..++.|+++++.||..+.|.+.||++++.+.....++.+. .+++++.+++.+|++
T Consensus 81 l~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~ 160 (859)
T KOG1241|consen 81 LQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICED 160 (859)
T ss_pred HcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999999999999999998887665 899999999999999
Q ss_pred ccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHH
Q 006201 162 VSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241 (657)
Q Consensus 162 ~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~ 241 (657)
.+|+.+ ..+.+.++..++++++...++..||.+|++||.+.+.|...+|.++..|+.+|+.+++..+.+|.+++.+++.
T Consensus 161 i~pevl-~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ 239 (859)
T KOG1241|consen 161 IDPEVL-EQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQ 239 (859)
T ss_pred CCHHHH-HHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHH
Confidence 988877 7788999999999998778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHhHHH-HHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhh
Q 006201 242 CLVAISSTYYEKLAPYIQD-IFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPV 320 (657)
Q Consensus 242 ~l~~l~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (657)
||.+++..||+++.+|+.+ ++.+.+..+++++++|..+++|||+++|+.+.++..++.+..++...=.+++|.+..++.
T Consensus 240 ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~ 319 (859)
T KOG1241|consen 240 CLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQD 319 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhH
Confidence 9999999999999999986 999999999999999999999999999999999877765433332210267899999999
Q ss_pred HHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCC
Q 006201 321 LVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSP 400 (657)
Q Consensus 321 l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~ 400 (657)
++|.+++.|.+.+||+|+|+ |++.++|..||..++.++|++++|+++||+.+.+++++|+.|++|.+++|++.+|..+
T Consensus 320 v~P~Ll~~L~kqde~~d~Dd--Wnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~ 397 (859)
T KOG1241|consen 320 VVPVLLELLTKQDEDDDDDD--WNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEP 397 (859)
T ss_pred hhHHHHHHHHhCCCCccccc--CcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCch
Confidence 99999999999887765444 9999999999999999999999999999999999999999999999999999999878
Q ss_pred CcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHcccchHHHHHHHHH
Q 006201 401 EKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGA 480 (657)
Q Consensus 401 ~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~a 480 (657)
+.+.+++++.+|.++..+ .|++..||.++.|++|++++.++. +.....++..+++.++.+|.|+|+|..++||+
T Consensus 398 ~~Lt~iV~qalp~ii~lm-~D~sl~VkdTaAwtlgrI~d~l~e-----~~~n~~~l~~~l~~l~~gL~DePrva~N~CWA 471 (859)
T KOG1241|consen 398 DKLTPIVIQALPSIINLM-SDPSLWVKDTAAWTLGRIADFLPE-----AIINQELLQSKLSALLEGLNDEPRVASNVCWA 471 (859)
T ss_pred hhhhHHHhhhhHHHHHHh-cCchhhhcchHHHHHHHHHhhchh-----hcccHhhhhHHHHHHHHHhhhCchHHHHHHHH
Confidence 889999999999999999 999999999999999999999874 34677899999999999999999999999999
Q ss_pred HHHHHhhccCCC---CCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Q 006201 481 LYFLAQGFEDAI---SPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMEL 557 (657)
Q Consensus 481 l~~l~~~~~~~~---~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l 557 (657)
+..+.+.+.+.. .......||++.|+..|++.....+.++.++|..++++|+.+++.+++.+.|.+..+.+.++..+
T Consensus 472 f~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl 551 (859)
T KOG1241|consen 472 FISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKL 551 (859)
T ss_pred HHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 999997764320 01234568999999999999988776689999999999999999999999999999999999999
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHcc-cCCcchhhHHHHHHHHH
Q 006201 558 HQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAI-RSATAHEEAMLAIGALA 636 (657)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~v~~~~~~~l~~l~ 636 (657)
.+.++.+..+-+|+.....+++.++.+++.+.+.+|.+ +.++.+.+|..++++++. ++..+.++|+.+++.++
T Consensus 552 ~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~------~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~ 625 (859)
T KOG1241|consen 552 DQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSD------IREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLA 625 (859)
T ss_pred HHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHcccc------chhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHH
Confidence 99998777788888888899999999999999999997 999999999999999998 56678999999999999
Q ss_pred HHhchhhhhcccc
Q 006201 637 YATGLCHHRRCCW 649 (657)
Q Consensus 637 ~~~g~~f~~y~~~ 649 (657)
..+|..|++|++-
T Consensus 626 ~~Lg~~F~kym~~ 638 (859)
T KOG1241|consen 626 ESLGKGFAKYMPA 638 (859)
T ss_pred HHHhHhHHHHHHH
Confidence 9999999988864
No 2
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-66 Score=538.57 Aligned_cols=586 Identities=23% Similarity=0.353 Sum_probs=502.7
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhh
Q 006201 2 SAEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (657)
Q Consensus 2 ~~~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (657)
.+.+.|+++++.|||+++|++||+.|+....+ +.....|..++.+ +.++++|++|++++|+.+.+ .
T Consensus 3 ~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~--~~~l~~L~~i~~~-~~~p~~Rq~aaVl~Rkl~~~-----------~ 68 (1075)
T KOG2171|consen 3 SAPLEQLLQQLLSPDNEVRRQAEEALETLAKT--EPLLPALAHILAT-SADPQVRQLAAVLLRKLLTK-----------H 68 (1075)
T ss_pred hhHHHHHHHHhcCCCchHHHHHHHHHHHhhcc--cchHHHHHHHHhc-CCChHHHHHHHHHHHHHHHH-----------H
Confidence 35799999999999999999999999977666 4477777777776 68999999999999999874 6
Q ss_pred cccCChHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhh
Q 006201 82 WLSLDSSVKAQIKSFILKTLSSPA-HDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICE 160 (657)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~~~-~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~ 160 (657)
|..++.+.++.||+.++.++.++. +.||++.|.+++.+++.++|+ .||++++.|+++.+|+++..|+.|+.+|..+.+
T Consensus 69 w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~ 147 (1075)
T KOG2171|consen 69 WSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPE 147 (1075)
T ss_pred hhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhh
Confidence 788999999999999999988765 899999999999999999996 999999999999999999999999999999998
Q ss_pred hccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcC-ChhhH---HHHHHHHHhhccCCcHHHH
Q 006201 161 EVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFS-NDMER---DYIMRVVCEATLSPEVKIR 236 (657)
Q Consensus 161 ~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~-~~~~~---~~il~~l~~~~~~~~~~~~ 236 (657)
.+ +..+ .+|+..+.+.|.+++. |++..||..|+++++.++.+.+++-. ...++ +.+++.+....++++.+..
T Consensus 148 ~~-~~~~-~~~~~~l~~lf~q~~~--d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a 223 (1075)
T KOG2171|consen 148 TF-GNTL-QPHLDDLLRLFSQTMT--DPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAA 223 (1075)
T ss_pred hh-cccc-chhHHHHHHHHHHhcc--CCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHH
Confidence 88 6666 7899999999999999 56556999999999999988752111 00111 2244455556677888888
Q ss_pred HHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHH
Q 006201 237 QAAFECLVAISSTYYEKLAPYIQDIFNITAKAVRE--DEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFI 314 (657)
Q Consensus 237 ~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (657)
..++++|.++++..|+++.+++..++++++...++ .++.+|..|++++.++++..+...++ .
T Consensus 224 ~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~----------------~ 287 (1075)
T KOG2171|consen 224 KSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKK----------------L 287 (1075)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhh----------------c
Confidence 99999999999999999999999999999887664 67899999999999999986654433 2
Q ss_pred HhhhhhHHHHHHHHhhhhcCcc-------ccCCCcchHhhhHHHHHHHHHhhcC-CCchhchHHHHHhhhcCcchhhHHH
Q 006201 315 KHALPVLVPLLLETLLKQEEDQ-------DQDEGAWNIAMAGGTCLGLVARTVG-DDIVPLVMPFVEENITKQEWRQREA 386 (657)
Q Consensus 315 ~~~l~~l~~~l~~~l~~~~~d~-------~~d~~~~~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l~~~~~~~r~a 386 (657)
.++...+++.++..|++.++|+ .|||+.-++...|.+++++++..+| +.++|.+++.+..++.+++|+.|+|
T Consensus 288 ~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~A 367 (1075)
T KOG2171|consen 288 ALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHA 367 (1075)
T ss_pred hhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHH
Confidence 2366778999999888765551 1233334677889999999999995 7889999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHH
Q 006201 387 ATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQS 466 (657)
Q Consensus 387 al~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~ 466 (657)
|+++|+++++|| .+.+...++++++.+++.+ +|+||+||++|+.++|++++.+. |...+.+...+.|.|+..
T Consensus 368 aL~Als~i~EGc-~~~m~~~l~~Il~~Vl~~l-~DphprVr~AA~naigQ~stdl~------p~iqk~~~e~l~~aL~~~ 439 (1075)
T KOG2171|consen 368 ALLALSVIAEGC-SDVMIGNLPKILPIVLNGL-NDPHPRVRYAALNAIGQMSTDLQ------PEIQKKHHERLPPALIAL 439 (1075)
T ss_pred HHHHHHHHHccc-HHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHhhhhhhc------HHHHHHHHHhccHHHHHH
Confidence 999999999999 5888899999999999999 99999999999999999999997 456777778888899988
Q ss_pred ccc--chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHH
Q 006201 467 MKD--VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAP 544 (657)
Q Consensus 467 l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~ 544 (657)
+.+ +++|+..|+.++.+|.+.+ .+..+.||++.+++.++..+.+.+ .+.+++.++.++++++.+++..|.|
T Consensus 440 ld~~~~~rV~ahAa~al~nf~E~~-----~~~~l~pYLd~lm~~~l~~L~~~~--~~~v~e~vvtaIasvA~AA~~~F~p 512 (1075)
T KOG2171|consen 440 LDSTQNVRVQAHAAAALVNFSEEC-----DKSILEPYLDGLMEKKLLLLLQSS--KPYVQEQAVTAIASVADAAQEKFIP 512 (1075)
T ss_pred hcccCchHHHHHHHHHHHHHHHhC-----cHHHHHHHHHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHhhhhHh
Confidence 886 6899999999999999875 367899999999997777776665 4789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHH---HcccC
Q 006201 545 MVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRV---FAIRS 621 (657)
Q Consensus 545 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~---l~~~~ 621 (657)
|+..+||.+.+.+.+. ++++. ..+|+..++|++.++.++|++. |.|+++++++.++.. ..+.+
T Consensus 513 Y~d~~Mp~L~~~L~n~------~~~d~---r~LrgktmEcisli~~AVGke~-----F~~~a~eliqll~~~~~~~~~~d 578 (1075)
T KOG2171|consen 513 YFDRLMPLLKNFLQNA------DDKDL---RELRGKTMECLSLIARAVGKEK-----FLPLAEELIQLLLELQGSDQDDD 578 (1075)
T ss_pred HHHHHHHHHHHHHhCC------Cchhh---HHHHhhHHHHHHHHHHHhhhhh-----hhHhHHHHHHHHHhhcccchhhc
Confidence 9999999998888753 22222 3689999999999999999887 999999999999988 44446
Q ss_pred CcchhhHHHHHHHHHHHhchhhhhcccccc
Q 006201 622 ATAHEEAMLAIGALAYATGLCHHRRCCWGL 651 (657)
Q Consensus 622 ~~v~~~~~~~l~~l~~~~g~~f~~y~~~~~ 651 (657)
.-.+++.+.+|+++++++|.+|+||++.-+
T Consensus 579 d~~~sy~~~~warmc~ilg~~F~p~L~~Vm 608 (1075)
T KOG2171|consen 579 DPLRSYMIAFWARMCRILGDDFAPFLPVVM 608 (1075)
T ss_pred cccHHHHHHHHHHHHHHhchhhHhHHHHHh
Confidence 678899999999999999999999998643
No 3
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-67 Score=508.15 Aligned_cols=575 Identities=23% Similarity=0.407 Sum_probs=503.6
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhcC-CCChhHHHHHHHHHhhhcccchhhhHHHhhhh
Q 006201 3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVND-EKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (657)
Q Consensus 3 ~~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~-~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (657)
+++.++|++..|||+++|+.+...+.++... |+|-.+|+.+|.+. +.+..+|.+|+.+|||.++. +
T Consensus 13 ~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~--pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~-----------~ 79 (885)
T KOG2023|consen 13 QQLAQLLKNSQSPNSETRNNVQEKLEQFNLF--PDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRG-----------H 79 (885)
T ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhcc--cchhceeeEEEecccccchhHHHHhhhhHhccccc-----------c
Confidence 4789999999999999999999999999886 99999999998763 45788999999999999985 4
Q ss_pred cccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhh
Q 006201 82 WLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEE 161 (657)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~ 161 (657)
|..++.+...+||..+++++.+.++.||...+.++.+|+....- ..||+++|.|.+++.+++....++|+.+|..||+.
T Consensus 80 ~~~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~-~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcED 158 (885)
T KOG2023|consen 80 YNSIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGL-QHWPELLPQLCELLDSPDYNTCEGAFGALQKICED 158 (885)
T ss_pred ccCCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeeccccc-ccchhHHHHHHHHhcCCcccccchhHHHHHHHHhh
Confidence 57788899999999999999999999999999999999998754 69999999999999999999999999999999998
Q ss_pred ccccccch----hhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHH
Q 006201 162 VSSDAVEQ----DHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQ 237 (657)
Q Consensus 162 ~~~~~l~~----~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~ 237 (657)
. .+.+.. .-++.++|.+++..+ .+++.+|..|+.|+..++..-...+. ...+.+++.++.+..+++++||+
T Consensus 159 s-a~~lds~~~~rpl~~mipkfl~f~~--h~spkiRs~A~~cvNq~i~~~~qal~--~~iD~Fle~lFalanD~~~eVRk 233 (885)
T KOG2023|consen 159 S-AQFLDSDVLTRPLNIMIPKFLQFFK--HPSPKIRSHAVGCVNQFIIIQTQALY--VHIDKFLEILFALANDEDPEVRK 233 (885)
T ss_pred h-HHHHhhhcccCchHHhHHHHHHHHh--CCChhHHHHHHhhhhheeecCcHHHH--HHHHHHHHHHHHHccCCCHHHHH
Confidence 7 555532 456889999999999 68999999999999997653322221 12378999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhh
Q 006201 238 AAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHA 317 (657)
Q Consensus 238 ~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (657)
.+|..+.-+.+..++.+.||++.+++.++...++.++++...|.|||.++++.. .+.....++
T Consensus 234 ~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqp-----------------i~~~~L~p~ 296 (885)
T KOG2023|consen 234 NVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQP-----------------ICKEVLQPY 296 (885)
T ss_pred HHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCc-----------------CcHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999852 245678899
Q ss_pred hhhHHHHHHHHhhhhcCc----------------------------------------cc----cCC---CcchHhhhHH
Q 006201 318 LPVLVPLLLETLLKQEED----------------------------------------QD----QDE---GAWNIAMAGG 350 (657)
Q Consensus 318 l~~l~~~l~~~l~~~~~d----------------------------------------~~----~d~---~~~~~r~~a~ 350 (657)
+++++|.+++.|.|.++| ++ ||| .+|+.|++++
T Consensus 297 l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSA 376 (885)
T KOG2023|consen 297 LDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSA 376 (885)
T ss_pred HHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccH
Confidence 999999999988754321 00 111 1499999999
Q ss_pred HHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 006201 351 TCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTT 430 (657)
Q Consensus 351 ~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a 430 (657)
.+|+.++..+|++++|.++|++.+.+.+++|.+|+|++.++|+|++|| .+.+.++++.++|.++..| .|..|.||..+
T Consensus 377 AaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGc-M~g~~p~LpeLip~l~~~L-~DKkplVRsIT 454 (885)
T KOG2023|consen 377 AALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGC-MQGFVPHLPELIPFLLSLL-DDKKPLVRSIT 454 (885)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHH-hhhcccchHHHHHHHHHHh-ccCccceeeee
Confidence 999999999999999999999999999999999999999999999999 5889999999999999999 99999999999
Q ss_pred HHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHH
Q 006201 431 AWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQAL 509 (657)
Q Consensus 431 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L 509 (657)
||+|++++.|..+. ...+|+.+++..+++.+-| +.+|+++||+|++++-+.. ...+.||+..|+..|
T Consensus 455 CWTLsRys~wv~~~------~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A------~~eLVp~l~~IL~~l 522 (885)
T KOG2023|consen 455 CWTLSRYSKWVVQD------SRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEA------GEELVPYLEYILDQL 522 (885)
T ss_pred eeeHhhhhhhHhcC------ChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhc------cchhHHHHHHHHHHH
Confidence 99999999998742 4568999999999998887 7999999999999998864 457999999999999
Q ss_pred HHhhccccchhhhHHHHHHHHHHHHHHhcccc--cHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHH
Q 006201 510 LTVTHREDAGESRLRTAAYETLNEVVRCSTDE--TAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQV 587 (657)
Q Consensus 510 ~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 587 (657)
...++.++ ..+++ .+++|+++++.+.|.. -..|++-+||++++.|+.. +++|++.+ -.++|++.
T Consensus 523 ~~af~kYQ--~KNLl-ILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~l------sd~DKdLf-----PLLEClSs 588 (885)
T KOG2023|consen 523 VFAFGKYQ--KKNLL-ILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELL------SDSDKDLF-----PLLECLSS 588 (885)
T ss_pred HHHHHHHh--hccee-hHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhc------CcccchHH-----HHHHHHHH
Confidence 99999887 56776 6999999999999864 4568999999999999984 56777655 38999999
Q ss_pred HHHHhCCCcchhhHhhHHHHHHHHHHHHHHccc----------------CCcchhhHHHHHHHHHHHhchhhhhcc
Q 006201 588 IIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIR----------------SATAHEEAMLAIGALAYATGLCHHRRC 647 (657)
Q Consensus 588 l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~----------------~~~v~~~~~~~l~~l~~~~g~~f~~y~ 647 (657)
++.++|.. |.||++++++.+++++... +.+..-.++..++.|++.+|.+..+.+
T Consensus 589 ia~AL~~g------F~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lv 658 (885)
T KOG2023|consen 589 IASALGVG------FLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLV 658 (885)
T ss_pred HHHHHhcc------ccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHh
Confidence 99999999 9999999999998888721 334445689999999999999887754
No 4
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=100.00 E-value=5.9e-63 Score=471.47 Aligned_cols=627 Identities=31% Similarity=0.469 Sum_probs=546.8
Q ss_pred HHHHHHHH-hcCCChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhc
Q 006201 4 EVTQILLN-AQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRW 82 (657)
Q Consensus 4 ~l~~~l~~-~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~ 82 (657)
+|.++.++ .+|||+.+|..||.+|.+++..++..|+..+.+.+.|.+..++.|..|++.|||.+..+.+..+.++...|
T Consensus 5 ef~~l~~n~vLspD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW 84 (858)
T COG5215 5 EFRCLGKNHVLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRW 84 (858)
T ss_pred HHHHHHhcccCCCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhh
Confidence 56667766 48999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCCh-hHHHHHHHHHHHHhhh
Q 006201 83 LSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPP-HTKQATLETLGYICEE 161 (657)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~-~~~~~~l~~l~~i~~~ 161 (657)
..++.|.|+++|...++.|.++.+..-+.|+++++.||+.+.|++.||+++..+.....++.+ ..+..++.+++.+|+.
T Consensus 85 ~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces 164 (858)
T COG5215 85 LGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCES 164 (858)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999888765 5677889999999998
Q ss_pred ccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHH
Q 006201 162 VSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241 (657)
Q Consensus 162 ~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~ 241 (657)
..|+.+ ....+.++-.+.++.....++..+|.+|++||...+.+++++|..+..++++++.++...+.++.++..+++-
T Consensus 165 ~~Pe~l-i~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafg 243 (858)
T COG5215 165 EAPEDL-IQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFG 243 (858)
T ss_pred cCHHHH-HHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHH
Confidence 877655 3444555556666554447889999999999999999999999999899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHhHHH-HHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhh--hhcCCCCCCCCCCchhhHHHhhh
Q 006201 242 CLVAISSTYYEKLAPYIQD-IFNITAKAVREDEEPVALQAIEFWSSVCDEEIDIL--EEYGGDFSGDSDIPCFYFIKHAL 318 (657)
Q Consensus 242 ~l~~l~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l 318 (657)
||+++...+++++.+|+.. +..++.+.+++.++++..+++|||+++|+.+.+.. .++.++ ...+..+|.+...
T Consensus 244 Cl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe----~p~qn~~fa~aav 319 (858)
T COG5215 244 CLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPE----VPAQNHGFARAAV 319 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhccc----CchhhcchHHHHH
Confidence 9999999999999999975 66677788999999999999999999999886543 222221 1113456788888
Q ss_pred hhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCC
Q 006201 319 PVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGP 398 (657)
Q Consensus 319 ~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~ 398 (657)
..++|.+++.+..+++|+++|+ |++.++|..||..++...|+.++..++.|+.+++.+++|..|++|++++|++.++.
T Consensus 320 ~dvlP~lL~LL~~q~ed~~~Dd--Wn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp 397 (858)
T COG5215 320 ADVLPELLSLLEKQGEDYYGDD--WNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGP 397 (858)
T ss_pred HHHHHHHHHHHHhcCCCccccc--cchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCc
Confidence 8899999999998888876555 99999999999999999999999999999999999999999999999999999997
Q ss_pred CCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHcccchHHHHHHH
Q 006201 399 SPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKAC 478 (657)
Q Consensus 399 ~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~ 478 (657)
..+...+++++.+|.+.... .|+...|+.++.||+|+++.+.+.. -....++...+.+.+.++.|+|.+..+++
T Consensus 398 ~~~~lT~~V~qalp~i~n~m-~D~~l~vk~ttAwc~g~iad~va~~-----i~p~~Hl~~~vsa~liGl~D~p~~~~ncs 471 (858)
T COG5215 398 CEDCLTKIVPQALPGIENEM-SDSCLWVKSTTAWCFGAIADHVAMI-----ISPCGHLVLEVSASLIGLMDCPFRSINCS 471 (858)
T ss_pred cHHHHHhhHHhhhHHHHHhc-ccceeehhhHHHHHHHHHHHHHHHh-----cCccccccHHHHHHHhhhhccchHHhhhH
Confidence 66777889999999999999 8999999999999999999987631 13346788888999999999999999999
Q ss_pred HHHHHHHhhccCCC-CCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Q 006201 479 GALYFLAQGFEDAI-SPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMEL 557 (657)
Q Consensus 479 ~al~~l~~~~~~~~-~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l 557 (657)
|++.++++.+.+.. ..++.+.+|++.|+..|+...+...+ +.+.|..++++|++++..+++...+.+..+...+.+.+
T Consensus 472 w~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~N-e~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl 550 (858)
T COG5215 472 WRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALN-ESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKL 550 (858)
T ss_pred HHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Confidence 99999998765420 12567889999999999998876643 68899999999999999999999999999999999999
Q ss_pred HHHHhhh--cCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHccc-CCcchhhHHHHHHH
Q 006201 558 HQTLEAQ--KLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIR-SATAHEEAMLAIGA 634 (657)
Q Consensus 558 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~v~~~~~~~l~~ 634 (657)
.+++... ....+|.-.+.++++.++..+..+++..|.+ +.+..+++|+.+++.+... ...+.++++.+++.
T Consensus 551 ~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~------ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsa 624 (858)
T COG5215 551 DECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRD------IEDVEDQLMELFIRILESTKPTTAFGDVYTAISA 624 (858)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC------cccHHHHHHHHHHHHHhccCCchhhhHHHHHHHH
Confidence 9887632 2344555556789999999999999999998 8999999999999999886 44577899999999
Q ss_pred HHHHhchhhhhccccc
Q 006201 635 LAYATGLCHHRRCCWG 650 (657)
Q Consensus 635 l~~~~g~~f~~y~~~~ 650 (657)
|..++|+.|.+|.+..
T Consensus 625 l~~sl~e~Fe~y~~~f 640 (858)
T COG5215 625 LSTSLEERFEQYASKF 640 (858)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999988887653
No 5
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-36 Score=308.25 Aligned_cols=550 Identities=17% Similarity=0.249 Sum_probs=409.3
Q ss_pred ChhHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhh
Q 006201 1 MSAEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQ 80 (657)
Q Consensus 1 ~~~~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~ 80 (657)
|.+.+.+++.+..++|++.|+.||++|++++++ |+|...|++++.+.+.+..+|+.|+++|||.|.+.|+.... +.
T Consensus 2 d~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~--pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~--~g 77 (1010)
T KOG1991|consen 2 DLQSLLQIFRATIDSDAKERKAAEQQLNQLEKQ--PGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEA--PG 77 (1010)
T ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhcC--CcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCC--CC
Confidence 457899999999999999999999999999999 99999999999998889999999999999999999986531 11
Q ss_pred hcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhh
Q 006201 81 RWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICE 160 (657)
Q Consensus 81 ~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~ 160 (657)
.-..+.++.|..||+.++..+.+.++.+|.+...++..|...++| .+||++++.+...+++++.....+|+.|+..+++
T Consensus 78 ~~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p-~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k 156 (1010)
T KOG1991|consen 78 RPFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYP-EQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFK 156 (1010)
T ss_pred CcCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCc-ccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHH
Confidence 224589999999999999999999999999999999999999999 6999999999999999999999999999999998
Q ss_pred hcccc------ccchhhHhHHHH----HHHhccCCC-CCCHHHHHHHHHHHHHHHhh-chhhcCChhhHHHHHHHHHhhc
Q 006201 161 EVSSD------AVEQDHVNKILT----AVVQGMNAS-ESNNDVRLAATRALYNALGF-AQANFSNDMERDYIMRVVCEAT 228 (657)
Q Consensus 161 ~~~~~------~l~~~~~~~l~~----~l~~~l~~~-~~~~~vr~~al~~l~~~~~~-~~~~~~~~~~~~~il~~l~~~~ 228 (657)
.+.-. .+ ...+...+| .+.+.+..+ ..+.++.+..++++.+++.+ ++..+........+++.+...+
T Consensus 157 ~ye~k~~eeR~~l-~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~ 235 (1010)
T KOG1991|consen 157 TYEWKKDEERQPL-GEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSIL 235 (1010)
T ss_pred HHhhccccccccH-HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHH
Confidence 76311 11 123344444 444455532 24556778899999888865 3333322222244555544433
Q ss_pred c-----------------CCcHHHHHHHHHHHHHHHHHHHH---------hhH-----HhHHHHHHHHHHHHhc------
Q 006201 229 L-----------------SPEVKIRQAAFECLVAISSTYYE---------KLA-----PYIQDIFNITAKAVRE------ 271 (657)
Q Consensus 229 ~-----------------~~~~~~~~~~~~~l~~l~~~~~~---------~~~-----~~~~~l~~~~~~~~~~------ 271 (657)
+ .+.++.++.++..|.++.+.+++ .|. .+.+.+++.+++.+..
T Consensus 236 ~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~y 315 (1010)
T KOG1991|consen 236 NRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLY 315 (1010)
T ss_pred cCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2 13467889999999999987642 122 2333444444443321
Q ss_pred CChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHH-HHHHHhhhhcCccc---c---------
Q 006201 272 DEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVP-LLLETLLKQEEDQD---Q--------- 338 (657)
Q Consensus 272 ~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~l~~~l~~~~~d~~---~--------- 338 (657)
..+++-..++.|+....... ..+++++++++-++. .++..|+..++|+| +
T Consensus 316 ls~rvl~~~l~fl~~~Vs~~-----------------~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~ 378 (1010)
T KOG1991|consen 316 LSDRVLYYLLNFLEQCVSHA-----------------STWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKK 378 (1010)
T ss_pred CCHHHHHHHHHHHHHhccHH-----------------HHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhc
Confidence 34556666666665554432 135677887776663 56677777665532 1
Q ss_pred ---CCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhc------C--cchhhHHHHHHHHHHhhcCCCCCc-chHH
Q 006201 339 ---DEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENIT------K--QEWRQREAATYAFGSILEGPSPEK-LVPL 406 (657)
Q Consensus 339 ---d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~------~--~~~~~r~aal~~l~~i~~~~~~~~-~~~~ 406 (657)
-++..+++.+|..++..++..-|++.+|.+++++.+.++ . .+.+.+++|+..+|++++...++. ++..
T Consensus 379 ~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~ 458 (1010)
T KOG1991|consen 379 FDIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQ 458 (1010)
T ss_pred CchhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHH
Confidence 123457888999999999999999999999998887765 2 357899999999999987553222 2333
Q ss_pred HHH-HHHHHHHHhcCCCcHHHHHHHHHHHHHHHh-hhccCcCCCccCCcccHHHHHHHHHHHcc-c-chHHHHHHHHHHH
Q 006201 407 VNI-ALNFMLTALMQDPNNHVKDTTAWTLGRMFE-FLHGSTLETPIINQGNCQQIISVLLQSMK-D-VPNVAEKACGALY 482 (657)
Q Consensus 407 ~~~-i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~-~~~~~~~~~~~~~~~~~~~il~~l~~~l~-d-~~~v~~~a~~al~ 482 (657)
+.. +++.+.+.+ +++-...|.+|||++++++. .++ ....+..++....++|. | +-.||..|+.||.
T Consensus 459 mE~flv~hVfP~f-~s~~g~Lrarac~vl~~~~~~df~---------d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq 528 (1010)
T KOG1991|consen 459 MEYFLVNHVFPEF-QSPYGYLRARACWVLSQFSSIDFK---------DPNNLSEALELTHNCLLNDNELPVRVEAALALQ 528 (1010)
T ss_pred HHHHHHHHhhHhh-cCchhHHHHHHHHHHHHHHhccCC---------ChHHHHHHHHHHHHHhccCCcCchhhHHHHHHH
Confidence 433 567888889 99999999999999999995 443 35678888889999988 5 4689999999999
Q ss_pred HHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHh
Q 006201 483 FLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLE 562 (657)
Q Consensus 483 ~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 562 (657)
.|+.+... ....+.++++++++.|+.+.+..+. . -+..++..++...++...||...+++.+...+.++++
T Consensus 529 ~fI~~~~~---~~e~~~~hvp~~mq~lL~L~ne~En--d----~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~ 599 (1010)
T KOG1991|consen 529 SFISNQEQ---ADEKVSAHVPPIMQELLKLSNEVEN--D----DLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQ 599 (1010)
T ss_pred HHHhcchh---hhhhHhhhhhHHHHHHHHHHHhcch--h----HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHh
Confidence 99988653 1345899999999999999988763 2 2455667889999999999999999999988888876
Q ss_pred hhcC---ChhHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 006201 563 AQKL---SSDEREKQNEIQGLLCGCLQVIIQKLGSS 595 (657)
Q Consensus 563 ~~~~---~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 595 (657)
+... +++|+. -....++.++.++..++.+.
T Consensus 600 ~~~~~~~~~ddk~---iaA~GiL~Ti~Til~s~e~~ 632 (1010)
T KOG1991|consen 600 TSEDEDESDDDKA---IAASGILRTISTILLSLENH 632 (1010)
T ss_pred ccCCCCccchHHH---HHHHHHHHHHHHHHHHHhcc
Confidence 4111 122321 12224677788888887765
No 6
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-32 Score=275.53 Aligned_cols=600 Identities=15% Similarity=0.188 Sum_probs=425.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcc
Q 006201 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWL 83 (657)
Q Consensus 4 ~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~ 83 (657)
.+.+.|.+..+|||.+|+.||+.|+..+.+ ++|...+++++.+++.+.++|..|++++||+++++|.+..+. -.
T Consensus 6 ~l~~~l~qTl~pdps~rk~aEr~L~~~e~q--~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~----~~ 79 (960)
T KOG1992|consen 6 TLANYLLQTLSPDPSVRKPAERALRSLEGQ--QNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDS----PI 79 (960)
T ss_pred HHHHHHHhcCCCCCccCchHHHHHHHhccC--CCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCC----cc
Confidence 688899999999999999999999999988 999999999999988899999999999999999999765322 24
Q ss_pred cCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcc
Q 006201 84 SLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVS 163 (657)
Q Consensus 84 ~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~ 163 (657)
.+.++.++.||..++..|.+....+..+++.+++.|++.++| ..||+|+|.+...+++.|-....+.+..-.++.+.++
T Consensus 80 ~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP-~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R 158 (960)
T KOG1992|consen 80 KIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFP-DKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYR 158 (960)
T ss_pred ccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccc-hhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcC
Confidence 689999999999999999999999999999999999999999 6999999999999999998888888888888999885
Q ss_pred ccccchh--------------hHhHHHHHHHhccCCCCCCHH-------HHHHHHHHHHHHHh-hchhhcCChhhHHHHH
Q 006201 164 SDAVEQD--------------HVNKILTAVVQGMNASESNND-------VRLAATRALYNALG-FAQANFSNDMERDYIM 221 (657)
Q Consensus 164 ~~~l~~~--------------~~~~l~~~l~~~l~~~~~~~~-------vr~~al~~l~~~~~-~~~~~~~~~~~~~~il 221 (657)
++.=+.. -...++....+.....+.+.. +....++.+.++.. -+++.|++ +.+.+|
T Consensus 159 ~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEd--nm~~wM 236 (960)
T KOG1992|consen 159 PEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFED--NMKTWM 236 (960)
T ss_pred cccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHh--hHHHHH
Confidence 4321110 111222222222221122222 11222233333221 12333432 225677
Q ss_pred HHHHhhccC-------Cc------HHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCC-----hHHHHHHHHH
Q 006201 222 RVVCEATLS-------PE------VKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDE-----EPVALQAIEF 283 (657)
Q Consensus 222 ~~l~~~~~~-------~~------~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~v~~~a~~~ 283 (657)
+.+..+++. ++ .++|..+|+.+.-.+.+|++.|.+++++++..+|..+.+.. +.....|+.|
T Consensus 237 ~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~F 316 (960)
T KOG1992|consen 237 GAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQF 316 (960)
T ss_pred HHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 777666541 11 35788999999999999999999999999999999877533 3456678999
Q ss_pred HHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhH-HHHHHHHhhhhcCccc--------------cCCCcchHhhh
Q 006201 284 WSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVL-VPLLLETLLKQEEDQD--------------QDEGAWNIAMA 348 (657)
Q Consensus 284 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~l~~~l~~~~~d~~--------------~d~~~~~~r~~ 348 (657)
+..+++.. +|.+..+++ +..+.+.+.+ +|.+ .-.++|+| +.-|.-+-|++
T Consensus 317 Lt~V~~r~-----~y~~~F~~~------~vl~~i~e~VvlpN~----~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~ 381 (960)
T KOG1992|consen 317 LTSVSRRP-----HYAELFEGE------NVLAQICEKVVLPNL----ILREEDEELFEDNPLEYIRRDLEGSDVDTRRRA 381 (960)
T ss_pred HHHHHhhh-----hhHhhhcch------HHHHHHHHhhccccc----ccchhhHHHhccCHHHHHHHhcccCCcchhHHH
Confidence 99988742 111111111 2222222221 1222 21222221 11233467889
Q ss_pred HHHHHHHHHhhcCCCchhchHHHHHhhhc------CcchhhHHHHHHHHHHhhcC-------CC-CCcc---hHH-HHHH
Q 006201 349 GGTCLGLVARTVGDDIVPLVMPFVEENIT------KQEWRQREAATYAFGSILEG-------PS-PEKL---VPL-VNIA 410 (657)
Q Consensus 349 a~~~L~~l~~~~~~~~~~~l~~~l~~~l~------~~~~~~r~aal~~l~~i~~~-------~~-~~~~---~~~-~~~i 410 (657)
|.+.+.-++..+...+.+.+-..+...+. +.+|+.++.+++.+.+++-. +. ...+ ..| ..++
T Consensus 382 a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~i 461 (960)
T KOG1992|consen 382 AIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQI 461 (960)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHh
Confidence 99999999999977777776666665554 45799999999998887643 10 1111 122 3345
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhcc
Q 006201 411 LNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFE 489 (657)
Q Consensus 411 ~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~ 489 (657)
+|.+...- ..++|.++..+.+-+-.+-.. ..++++-..+|.++..|+. ...|-..|+.++..+....+
T Consensus 462 lp~L~s~~-vn~~pilka~aIKy~~~FR~q----------l~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre 530 (960)
T KOG1992|consen 462 LPDLLSPN-VNEFPILKADAIKYIYTFRNQ----------LGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRE 530 (960)
T ss_pred hHHhccCc-cccccchhhcccceeeeeccc----------CChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhcccccc
Confidence 55554422 357899999888665433333 3477889999999999996 57788899999998876655
Q ss_pred C---CCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhcC
Q 006201 490 D---AISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKL 566 (657)
Q Consensus 490 ~---~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 566 (657)
. .++.+..+.||+..++..|...++.++.. + -+..++++.+++........|+.+.++..+.+.+.+...+|.
T Consensus 531 ~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~-E--neylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs- 606 (960)
T KOG1992|consen 531 NSNAKIFGAEDIAPFVEILLTNLFKALSLPGKA-E--NEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPS- 606 (960)
T ss_pred CccccccchhhcchHHHHHHHHHHHhccCCccc-c--cHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCC-
Confidence 4 13457789999999999999888766531 2 237899999999999988889999888888877777655442
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHcccCCcchhhHHHHHHHHHHHhch----h
Q 006201 567 SSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGL----C 642 (657)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~~~~l~~l~~~~g~----~ 642 (657)
++ ..-+..+++++.+++..++.+ .+..+.+...+++....+|+++-.+....++-.++.++...+. +
T Consensus 607 ---~P----~fnHYLFEsi~~li~~t~~~~--~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~ 677 (960)
T KOG1992|consen 607 ---NP----QFNHYLFESIGLLIRKTCKAN--PSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGTIPDS 677 (960)
T ss_pred ---Cc----hhHHHHHHHHHHHHHHHhccC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh
Confidence 22 233468899999888887764 3335567778888888888877666777888888888887665 6
Q ss_pred hhhcccccc
Q 006201 643 HHRRCCWGL 651 (657)
Q Consensus 643 f~~y~~~~~ 651 (657)
|.+.++-.+
T Consensus 678 ~~~l~~~lL 686 (960)
T KOG1992|consen 678 YSPLFPPLL 686 (960)
T ss_pred HHHHHHHhc
Confidence 666555443
No 7
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=100.00 E-value=5.7e-30 Score=259.05 Aligned_cols=577 Identities=17% Similarity=0.237 Sum_probs=406.6
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhh
Q 006201 2 SAEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (657)
Q Consensus 2 ~~~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (657)
++.+...|.+.+|+|+.+|.+||.+|+++... ++|...|.+++.++..+...|+.|.++|++++..+|++..+.+..
T Consensus 3 ~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~--~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~- 79 (1005)
T KOG2274|consen 3 KQAIIELLSGSLSADQNVRSQAETQLKQLELT--EGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRY- 79 (1005)
T ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHhccccc--hHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccC-
Confidence 46799999999999999999999999999887 889999999999977899999999999999999999988766432
Q ss_pred cccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhh
Q 006201 82 WLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEE 161 (657)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~ 161 (657)
-...+.+.|..||..|++++.+++..+|+.++.+++.|+..+|| +.||+++|.+..++++.|.+...+++++|..+...
T Consensus 80 ~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~P-d~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~e 158 (1005)
T KOG2274|consen 80 PLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYP-DEWPELVPFILKLLSSGNENSIHGAMRVLAELSDE 158 (1005)
T ss_pred CCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCc-hhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHH
Confidence 12267899999999999999988999999999999999999999 69999999999999999999999999999999887
Q ss_pred cccccc---chhhHhHHHHHHHhccCCCCCCHHHHH--HHHHHHHHHHhhchhhcCCh-hhH--------HHHHHHHHhh
Q 006201 162 VSSDAV---EQDHVNKILTAVVQGMNASESNNDVRL--AATRALYNALGFAQANFSND-MER--------DYIMRVVCEA 227 (657)
Q Consensus 162 ~~~~~l---~~~~~~~l~~~l~~~l~~~~~~~~vr~--~al~~l~~~~~~~~~~~~~~-~~~--------~~il~~l~~~ 227 (657)
...+.. +......+.-. ..... ..+...|. +.++.+.++...+...-+.. ..+ ..+++++...
T Consensus 159 v~~ee~~~~~~~~l~~m~~~-f~~~~--~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~ 235 (1005)
T KOG2274|consen 159 VDVEEMFFVGPVSLAEMYRI-FALTI--VYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHP 235 (1005)
T ss_pred HHHHHHhcccccchhhhhhh-hhhcc--ccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 621211 01112222211 11222 23333333 33466666665543221111 011 2233444333
Q ss_pred cc---CCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhc----------------------CCh------HH
Q 006201 228 TL---SPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVRE----------------------DEE------PV 276 (657)
Q Consensus 228 ~~---~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~----------------------~~~------~v 276 (657)
++ ..++..|...++++..+.++.|....+++..+++..|+.+.. .++ ..
T Consensus 236 l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l 315 (1005)
T KOG2274|consen 236 LQRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETL 315 (1005)
T ss_pred hcccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHh
Confidence 32 356788999999999999999999999999888888775431 111 12
Q ss_pred HHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhh-------hcCcc----ccCCCcchH
Q 006201 277 ALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLK-------QEEDQ----DQDEGAWNI 345 (657)
Q Consensus 277 ~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~-------~~~d~----~~d~~~~~~ 345 (657)
..+.++|+.+++.... ..+-++..++++++.+...+.- +..|. +++++..+.
T Consensus 316 ~i~i~eF~s~i~t~~~-----------------~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~ 378 (1005)
T KOG2274|consen 316 VIQIVEFLSTIVTNRF-----------------LSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTA 378 (1005)
T ss_pred hhhHHHHHHHHHHHHH-----------------HHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCchh
Confidence 2355666666665320 0111222344444444333211 11121 112223688
Q ss_pred hhhHHHHHHHHHhhcCCCchhchHHHHHhh---------hcCc-chhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHH
Q 006201 346 AMAGGTCLGLVARTVGDDIVPLVMPFVEEN---------ITKQ-EWRQREAATYAFGSILEGPSPEKLVPLVNIALNFML 415 (657)
Q Consensus 346 r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~---------l~~~-~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~ 415 (657)
|..+...+-.+...+|...+..+.+..... ++.+ .|+..++.+.+..+...+ +....++..++..+.
T Consensus 379 ~~~~rd~~~~v~~~f~~~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~---~~~dd~l~~l~~~~~ 455 (1005)
T KOG2274|consen 379 RISVRDLLLEVITTFGNEGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRID---DANDDKLIELTIMID 455 (1005)
T ss_pred hhhHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccC---cchHHHHHHHHHHHH
Confidence 888999999999999887776666653321 2233 488888888888877743 334445555666666
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHcc-c-chHHHHHHHHHHHHHHhhccCCCC
Q 006201 416 TALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK-D-VPNVAEKACGALYFLAQGFEDAIS 493 (657)
Q Consensus 416 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-d-~~~v~~~a~~al~~l~~~~~~~~~ 493 (657)
..+..+..|..-.+++|+++.++.... ..++.+..++...+.++. + .+.++.+|+.++..+|.
T Consensus 456 ~~l~~~e~P~Ll~Ra~~~i~~fs~~~~--------~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~------- 520 (1005)
T KOG2274|consen 456 NGLVYQESPFLLLRAFLTISKFSSSTV--------INPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCK------- 520 (1005)
T ss_pred hhcccccCHHHHHHHHHHHHHHHhhhc--------cchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccC-------
Confidence 666456678777799999999999875 567888999999999888 3 47788899988888874
Q ss_pred CCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhcCChhHHHH
Q 006201 494 PSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREK 573 (657)
Q Consensus 494 ~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ 573 (657)
...+.++.+.++..|.++..+.+ ..+...++++|+.+++.-++.....-..+.|.++..+-.. ++|+.
T Consensus 521 -~~vl~~~~p~ild~L~qlas~~s---~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~-------s~DP~- 588 (1005)
T KOG2274|consen 521 -VKVLLSLQPMILDGLLQLASKSS---DEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKY-------SEDPQ- 588 (1005)
T ss_pred -ceeccccchHHHHHHHHHccccc---HHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHh-------cCCch-
Confidence 46788999999999999998776 4566689999999999988765555567888887777664 33442
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHcccC----CcchhhHHHHHHHHHHHhchh
Q 006201 574 QNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRS----ATAHEEAMLAIGALAYATGLC 642 (657)
Q Consensus 574 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~----~~v~~~~~~~l~~l~~~~g~~ 642 (657)
+...+.+++-.++.... . ..|+...+++.+++.+.... .....-++..+..+.+..+++
T Consensus 589 ---V~~~~qd~f~el~q~~~-~------~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~p 651 (1005)
T KOG2274|consen 589 ---VASLAQDLFEELLQIAA-N------YGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSP 651 (1005)
T ss_pred ---HHHHHHHHHHHHHHHHH-h------hcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCC
Confidence 33445566666555322 2 55788888889888887753 445555667777777665544
No 8
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-29 Score=252.60 Aligned_cols=606 Identities=17% Similarity=0.220 Sum_probs=394.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhccc
Q 006201 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLS 84 (657)
Q Consensus 5 l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~ 84 (657)
+++.|+++.|||+.++|.||++|.+.+.+ |||...|..+..|.+.+.++|.+|.+.+||-++++|... .. ..
T Consensus 2 vvq~Lq~Ats~d~~v~k~AE~qLr~WEtq--PGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~-----~~-~s 73 (978)
T KOG1993|consen 2 VVQVLQQATSQDHIVVKPAEAQLRQWETQ--PGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRN-----TK-MS 73 (978)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHhhccC--CcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcC-----Cc-cc
Confidence 57899999999999999999999999998 999999999999988899999999999999999999743 22 35
Q ss_pred CChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCC----ChhHHHHHHHHHHHHhh
Q 006201 85 LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQL----PPHTKQATLETLGYICE 160 (657)
Q Consensus 85 l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~----~~~~~~~~l~~l~~i~~ 160 (657)
+++|.|..||..++.....+++.+..+.|.++++||+.++| ..||+++|.|.+.+++. |.......+..+..+.+
T Consensus 74 l~~EEK~~iR~~Ll~~~~E~~nQlaiQ~AvlisrIARlDyP-reWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK 152 (978)
T KOG1993|consen 74 LPPEEKDFIRCNLLLHSDEENNQLAIQNAVLISRIARLDYP-REWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILK 152 (978)
T ss_pred CCHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcCCC-ccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999 69999999999998876 77788888888988888
Q ss_pred hccccccc--hhhH----hHHHHHH------------HhccCCCCC-----CHHHHHHHHHHHHHHHhhchhhcCChhhH
Q 006201 161 EVSSDAVE--QDHV----NKILTAV------------VQGMNASES-----NNDVRLAATRALYNALGFAQANFSNDMER 217 (657)
Q Consensus 161 ~~~~~~l~--~~~~----~~l~~~l------------~~~l~~~~~-----~~~vr~~al~~l~~~~~~~~~~~~~~~~~ 217 (657)
......+. ++.+ ..+++.+ .+..++.+. ...+-..+++++..++.+.-.+..+....
T Consensus 153 ~Lat~RL~a~rk~F~el~~~I~~~l~~~l~s~lt~~~lq~~ss~~ea~~LsalQ~s~~~lk~lRrlvv~G~~~P~kse~~ 232 (978)
T KOG1993|consen 153 ALATKRLLADRKAFYELAPEILTILAPILWSSLTMMFLQSVSSIKEATLLSALQRSYLTLKVLRRLVVFGFQNPSKSEFF 232 (978)
T ss_pred HHHHhHHhhhhHHHHHHhHHHHHHHHHHHhcchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhHH
Confidence 76433332 1222 2222211 111111000 11223446677777665421111111111
Q ss_pred HH---HHHH----HHhhc----cCCcHHHHHHH----HHHHHHHHHHHHHhhHH--hHHHHHHHHHHHHhcCC-------
Q 006201 218 DY---IMRV----VCEAT----LSPEVKIRQAA----FECLVAISSTYYEKLAP--YIQDIFNITAKAVREDE------- 273 (657)
Q Consensus 218 ~~---il~~----l~~~~----~~~~~~~~~~~----~~~l~~l~~~~~~~~~~--~~~~l~~~~~~~~~~~~------- 273 (657)
.. ++.. +.... +....++.... .+.+..+.+..|-.|.+ ..+..+++.+..+.+..
T Consensus 233 eRl~~F~e~~~~~~~~~~s~~~~~vk~di~ek~~i~l~K~l~~l~~rhpfsF~~~~~~~~~l~f~~~yIf~~~~~l~~~~ 312 (978)
T KOG1993|consen 233 ERLLQFLELHQRKLLSSLSTGTQSVKSDILEKFCIKLMKVLAFLFNRHPFSFSFYSPCPVKLEFSIDYIFDEYDFLGQIS 312 (978)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCcccccccccceeeehhhhhhhcccchhcccc
Confidence 11 1111 11111 11112222222 23344444444433443 34455565555544431
Q ss_pred ------hHHHHHHHHHHHHHhHHHHHhhhhcC-CCC----CCCCCCc------hhhHHHhhhhhHHHHHHHH--------
Q 006201 274 ------EPVALQAIEFWSSVCDEEIDILEEYG-GDF----SGDSDIP------CFYFIKHALPVLVPLLLET-------- 328 (657)
Q Consensus 274 ------~~v~~~a~~~~~~l~~~~~~~~~~~~-~~~----~~~~~~~------~~~~~~~~l~~l~~~l~~~-------- 328 (657)
++...+++..+..+.... ..++. +.. .++.... ...+..+.+..++..++.+
T Consensus 313 ~~~~~fe~f~iq~l~mlK~vm~~~---~~~~s~~~k~~~d~~~~~~~~a~~i~~sFl~~~rIt~lcd~Lvt~YflLt~~e 389 (978)
T KOG1993|consen 313 GHLSSFEEFFIQCLNMLKKVMIMK---NYKFSLTIKEFCDTKDEHLETAQKIYNSFLTDNRITNLCDLLVTHYFLLTEEE 389 (978)
T ss_pred cccccHHHHHHHHHHHHHHHHHhh---cccccccchhcccCccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCHHH
Confidence 223344444333322211 01110 000 0011000 0011122233344444332
Q ss_pred hhhhcCccc-----cCCCcc--hHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCc---------chhhHHHHHHHHH
Q 006201 329 LLKQEEDQD-----QDEGAW--NIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQ---------EWRQREAATYAFG 392 (657)
Q Consensus 329 l~~~~~d~~-----~d~~~~--~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~---------~~~~r~aal~~l~ 392 (657)
+..+.+|+| ++..+| .+|.+|...+..+...+++-+.|.++..+.+..+.. .--.+.|+..++|
T Consensus 390 LEeW~~dPE~~~~Eq~~~dwey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g 469 (978)
T KOG1993|consen 390 LEEWTQDPEGWVLEQSGGDWEYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFG 469 (978)
T ss_pred HHHHhcChHHhhhhcccccceeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHH
Confidence 122233443 222335 799999999999999999999999999885433221 1234555555666
Q ss_pred HhhcCCC-CCcchHHH-HHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc
Q 006201 393 SILEGPS-PEKLVPLV-NIALNFMLTALMQDPN-NHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD 469 (657)
Q Consensus 393 ~i~~~~~-~~~~~~~~-~~i~~~l~~~l~~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d 469 (657)
..+...+ .-.+...+ ..++|-+- . .+++ ..+|++.+|.+|+....- ...+.-..+..++++.++|
T Consensus 470 ~~a~~l~~~~dF~~Wl~~~llpEl~--~-~~~~~RiiRRRVa~ilg~Wvsvq---------~~~e~k~l~Y~a~lnLL~d 537 (978)
T KOG1993|consen 470 LAAYELSNILDFDKWLQEALLPELA--N-DHGNSRIIRRRVAWILGQWVSVQ---------QKLELKPLLYCAFLNLLQD 537 (978)
T ss_pred HHHHHHHhcCCHHHHHHHhhCHHhh--h-cccchhHHHHHHHHHHhhhhhee---------chHhHHHHHHHHHHHhcCc
Confidence 5443221 11122222 22333332 2 2333 456999999999988843 2345567788888888887
Q ss_pred --chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHH
Q 006201 470 --VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVM 547 (657)
Q Consensus 470 --~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~ 547 (657)
+..|+..++.+++..++..+ +.+..+.||++.+...+.+++...+ +.+.|..++..++.++...++...||..
T Consensus 538 ~~D~vV~Ltt~~tlkl~vDD~n---F~~dsFlp~lenlf~~lfkll~~~~--e~Dtk~~VL~~ls~lI~r~~e~I~P~~~ 612 (978)
T KOG1993|consen 538 QNDLVVRLTTARTLKLVVDDWN---FSEDSFLPYLENLFVLLFKLLKAVE--ECDTKTSVLNLLSTLIERVSEHIAPYAS 612 (978)
T ss_pred cccceeehHHHHHHHHhhhhcc---CChhhhhhhHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 46799999999999988654 5678899999999999999998776 4667779999999999999998889999
Q ss_pred HHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHcccCCcchhh
Q 006201 548 QLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEE 627 (657)
Q Consensus 548 ~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~ 627 (657)
.+++.+-..|+.. +++ .-+|++++.++..+++++|..+ ..+.|++-+++......=+.++..+.|+
T Consensus 613 ~ivq~lp~LWe~s-------~~e----~lLr~alL~~L~~lV~alg~qS---~~~~~fL~pVIel~~D~~sP~hv~L~ED 678 (978)
T KOG1993|consen 613 TIVQYLPLLWEES-------EEE----PLLRCALLATLRNLVNALGAQS---FEFYPFLYPVIELSTDPSSPEHVYLLED 678 (978)
T ss_pred HHHHHHHHHHhhh-------ccC----cHHHHHHHHHHHHHHHHhccCC---ccchHHHHHHHHHhcCCCCCceeehhhh
Confidence 9999999999874 222 2578899999999999999874 3366777777777666666667778999
Q ss_pred HHHHHHHHHHHhc---h---hhhhcccccccc
Q 006201 628 AMLAIGALAYATG---L---CHHRRCCWGLMQ 653 (657)
Q Consensus 628 ~~~~l~~l~~~~g---~---~f~~y~~~~~~~ 653 (657)
++..|+....... + ...||+-.++.+
T Consensus 679 gmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE~ 710 (978)
T KOG1993|consen 679 GMELWLTTLMNSQKLTPELLLLFPHLLYIIEQ 710 (978)
T ss_pred HHHHHHHHHhcccccCHHHHHHHHHHHHHHHh
Confidence 9999999887543 2 334555555444
No 9
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=4e-28 Score=253.98 Aligned_cols=567 Identities=19% Similarity=0.224 Sum_probs=402.8
Q ss_pred CCChHHHHHHHHHHHHHHhcCc--------ccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccC
Q 006201 14 SVDGTVRKQAEESLKQYQEQNL--------PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSL 85 (657)
Q Consensus 14 s~d~~~r~~A~~~L~~~~~~~~--------~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l 85 (657)
++|+++|+.|--.+.++..+-| ...-..|+.++.. ...+.+|+.-+.++-...+... ...|+
T Consensus 48 ~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~-E~~~~vr~k~~dviAeia~~~l-------~e~WP-- 117 (1075)
T KOG2171|consen 48 SADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQS-ETEPSVRHKLADVIAEIARNDL-------PEKWP-- 117 (1075)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHhcc-------ccchH--
Confidence 5789999999999887655421 2344556666665 4577888866655544333211 12454
Q ss_pred ChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC--CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcc
Q 006201 86 DSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH--KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVS 163 (657)
Q Consensus 86 ~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~--~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~ 163 (657)
++.+.|+++..++++..|..+-.++..+....... +..+++.+.+.+++++++..+|..++++++.++...+
T Consensus 118 ------ell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~ 191 (1075)
T KOG2171|consen 118 ------ELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLE 191 (1075)
T ss_pred ------HHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhc
Confidence 46678999999999999999999999988875321 1345888899999999887799999999999998873
Q ss_pred ccccchhhHhHHHHHHHhccCCC--CCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhcc--CCcHHHHHHH
Q 006201 164 SDAVEQDHVNKILTAVVQGMNAS--ESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATL--SPEVKIRQAA 239 (657)
Q Consensus 164 ~~~l~~~~~~~l~~~l~~~l~~~--~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~--~~~~~~~~~~ 239 (657)
.+.-..+.+..++|.+++.+... +.+.+.-..++++|..++...+..+.. ....+++.-..... +-+..+|..+
T Consensus 192 ~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~--~l~~ii~~~l~Ia~n~~l~~~~R~~A 269 (1075)
T KOG2171|consen 192 NNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRP--HLSQIIQFSLEIAKNKELENSIRHLA 269 (1075)
T ss_pred cchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHH--HHHHHHHHHHHHhhcccccHHHHHHH
Confidence 11111466778888777665531 445556677888888877654443321 11345555555543 3567899999
Q ss_pred HHHHHHHHHHHHH---hhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCC-C---chhh
Q 006201 240 FECLVAISSTYYE---KLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSD-I---PCFY 312 (657)
Q Consensus 240 ~~~l~~l~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~-~---~~~~ 312 (657)
++++..+++..|. ...++.+.+++.++..+.+.+++ +-|..--+. ++++++.+ + .+..
T Consensus 270 Le~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D------~ew~~~d~~---------ded~~~~~~~~A~~~lD 334 (1075)
T KOG2171|consen 270 LEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDD------DEWSNEDDL---------DEDDEETPYRAAEQALD 334 (1075)
T ss_pred HHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccc------hhhcccccc---------ccccccCcHHHHHHHHH
Confidence 9999999998653 33467778888888887653332 122211000 00000000 0 0001
Q ss_pred H------HHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCC---chhchHHHHHhhhcCcchhh
Q 006201 313 F------IKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDD---IVPLVMPFVEENITKQEWRQ 383 (657)
Q Consensus 313 ~------~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~---~~~~l~~~l~~~l~~~~~~~ 383 (657)
. -+.+++.+++.+-..++. .+|..|++|.-+|+.+++.+++. .+|.+++++...++|+++++
T Consensus 335 rlA~~L~g~~v~p~~~~~l~~~l~S---------~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprV 405 (1075)
T KOG2171|consen 335 RLALHLGGKQVLPPLFEALEAMLQS---------TEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRV 405 (1075)
T ss_pred HHHhcCChhhehHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHH
Confidence 1 123333444444444432 34999999999999999988764 47889999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHH
Q 006201 384 REAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVL 463 (657)
Q Consensus 384 r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l 463 (657)
|+||+.|+|.++....++.-+.+-..+.|.++..+....+++|...|+-++-.+++.+.. ....+|++.+|...
T Consensus 406 r~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~------~~l~pYLd~lm~~~ 479 (1075)
T KOG2171|consen 406 RYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK------SILEPYLDGLMEKK 479 (1075)
T ss_pred HHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH------HHHHHHHHHHHHHH
Confidence 999999999999887544434444556667777772335789999999999999998863 35688999999966
Q ss_pred HHHccc--chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccc-hhhhHHHHHHHHHHHHHHhcc-
Q 006201 464 LQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDA-GESRLRTAAYETLNEVVRCST- 539 (657)
Q Consensus 464 ~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~-~~~~~~~~~~~al~~l~~~~~- 539 (657)
+..|.+ .+.|+..+..+|+.+.+.. +..+.||++.+|+.|.+++.+.+. +...+|-..+++++.+..+.|
T Consensus 480 l~~L~~~~~~~v~e~vvtaIasvA~AA------~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGk 553 (1075)
T KOG2171|consen 480 LLLLLQSSKPYVQEQAVTAIASVADAA------QEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGK 553 (1075)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHH------hhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhh
Confidence 666553 5889999999999999875 457999999999999999987662 245678889999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHcc
Q 006201 540 DETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAI 619 (657)
Q Consensus 540 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~ 619 (657)
+.|.|+..++++.+.+.-... ..+++ ..++..+..++.+|+.+|++ |.||++.+|+.+++..+.
T Consensus 554 e~F~~~a~eliqll~~~~~~~-----~~~dd-----~~~sy~~~~warmc~ilg~~------F~p~L~~Vmppl~~ta~~ 617 (1075)
T KOG2171|consen 554 EKFLPLAEELIQLLLELQGSD-----QDDDD-----PLRSYMIAFWARMCRILGDD------FAPFLPVVMPPLLKTARL 617 (1075)
T ss_pred hhhhHhHHHHHHHHHhhcccc-----hhhcc-----ccHHHHHHHHHHHHHHhchh------hHhHHHHHhHHHHHhhcc
Confidence 469999998888777643221 11233 35778889999999999999 999999999999876543
Q ss_pred c--------------------------CC----------cchhhHHHHHHHHHHHhchhhhhccccc
Q 006201 620 R--------------------------SA----------TAHEEAMLAIGALAYATGLCHHRRCCWG 650 (657)
Q Consensus 620 ~--------------------------~~----------~v~~~~~~~l~~l~~~~g~~f~~y~~~~ 650 (657)
. +. +-++.|..+++.++..++.+|.||...-
T Consensus 618 ~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v 684 (1075)
T KOG2171|consen 618 DPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQV 684 (1075)
T ss_pred CCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 1 11 1235688999999999999999998753
No 10
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.6e-26 Score=230.23 Aligned_cols=502 Identities=14% Similarity=0.203 Sum_probs=352.2
Q ss_pred HHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHhhhcCC---CCCchHHHHHHHhhcC--CChhHHHHHHHHHHHHhhhccc
Q 006201 91 AQIKSFILKTLSSPA-HDARSTASQVVAKVAGIELPH---KQWPELIGALLSNIHQ--LPPHTKQATLETLGYICEEVSS 164 (657)
Q Consensus 91 ~~i~~~ll~~l~~~~-~~vr~~aa~~l~~i~~~~~~~---~~~~~l~~~l~~~l~~--~~~~~~~~~l~~l~~i~~~~~~ 164 (657)
..+...+.....++. ..+|....+++|.++...-|+ ...++++..+++.... ++..+|.+|+.+|..-.+.. .
T Consensus 128 p~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~-~ 206 (859)
T KOG1241|consen 128 PELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFT-K 206 (859)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHH-H
Confidence 344555666666654 469999999999999987663 3557777777777654 35688999999998766544 2
Q ss_pred cccchh-hHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHH
Q 006201 165 DAVEQD-HVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECL 243 (657)
Q Consensus 165 ~~l~~~-~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l 243 (657)
..|..+ ..+-+++.+...-+ .++.+++.+|+.||..++...=+.+..-. -..++.+-...+.++++++...+++.|
T Consensus 207 ~nF~~E~ern~iMqvvcEatq--~~d~~i~~aa~~ClvkIm~LyY~~m~~yM-~~alfaitl~amks~~deValQaiEFW 283 (859)
T KOG1241|consen 207 ANFNNEMERNYIMQVVCEATQ--SPDEEIQVAAFQCLVKIMSLYYEFMEPYM-EQALFAITLAAMKSDNDEVALQAIEFW 283 (859)
T ss_pred HhhccHhhhceeeeeeeeccc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 223222 22334444444444 68899999999999998863211111000 012344444566788999999999999
Q ss_pred HHHHHHHHH-------hhH------------HhHHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHHhHHHHHhhhh
Q 006201 244 VAISSTYYE-------KLA------------PYIQDIFNITAKAVRED-------EEPVALQAIEFWSSVCDEEIDILEE 297 (657)
Q Consensus 244 ~~l~~~~~~-------~~~------------~~~~~l~~~~~~~~~~~-------~~~v~~~a~~~~~~l~~~~~~~~~~ 297 (657)
+.+++..-+ .+. .-++.++|.+++.+... +.+....|-..+..+++.-
T Consensus 284 sticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~------ 357 (859)
T KOG1241|consen 284 STICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV------ 357 (859)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh------
Confidence 988764322 111 12335666666555421 1123333322222222210
Q ss_pred cCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCC----CchhchHHHHH
Q 006201 298 YGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD----DIVPLVMPFVE 373 (657)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~----~~~~~l~~~l~ 373 (657)
-..+++.++|.+-+.++. .+|..|.+|.-+++.+...... .+.+..+|.+.
T Consensus 358 ----------------~D~Iv~~Vl~Fiee~i~~---------pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii 412 (859)
T KOG1241|consen 358 ----------------GDDIVPHVLPFIEENIQN---------PDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSII 412 (859)
T ss_pred ----------------cccchhhhHHHHHHhcCC---------cchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHH
Confidence 011233445555544442 2399999999999988876532 34455666777
Q ss_pred hhhcCcchhhHHHHHHHHHHhhcCCCCCcc--hHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCC--c
Q 006201 374 ENITKQEWRQREAATYAFGSILEGPSPEKL--VPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLET--P 449 (657)
Q Consensus 374 ~~l~~~~~~~r~aal~~l~~i~~~~~~~~~--~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~--~ 449 (657)
..+.|+.-.+|.++.++||.|++++. +.. ..++..+++.++..+ + .+|+|-.+++|++..+++.+....... .
T Consensus 413 ~lm~D~sl~VkdTaAwtlgrI~d~l~-e~~~n~~~l~~~l~~l~~gL-~-DePrva~N~CWAf~~Laea~~eA~~s~~qt 489 (859)
T KOG1241|consen 413 NLMSDPSLWVKDTAAWTLGRIADFLP-EAIINQELLQSKLSALLEGL-N-DEPRVASNVCWAFISLAEAAYEAAVSNGQT 489 (859)
T ss_pred HHhcCchhhhcchHHHHHHHHHhhch-hhcccHhhhhHHHHHHHHHh-h-hCchHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 77778887777999999999999873 333 346677888888888 6 479999999999999998765221100 0
Q ss_pred cCCcccHHHHHHHHHHHcc--c--chHHHHHHHHHHHHHHhhccCCC---------------------------------
Q 006201 450 IINQGNCQQIISVLLQSMK--D--VPNVAEKACGALYFLAQGFEDAI--------------------------------- 492 (657)
Q Consensus 450 ~~~~~~~~~il~~l~~~l~--d--~~~v~~~a~~al~~l~~~~~~~~--------------------------------- 492 (657)
....+++..++..|++.-. | ....|..|..||..+++...+.-
T Consensus 490 ~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~ 569 (859)
T KOG1241|consen 490 DPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLN 569 (859)
T ss_pred CccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHH
Confidence 1223577788888877655 3 36799999999999887643320
Q ss_pred ---------------CCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Q 006201 493 ---------------SPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMEL 557 (657)
Q Consensus 493 ---------------~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l 557 (657)
..+..+.++.+.++..+++++++.. ...+.+.++-+++.+++.+|..|.+|++.+.|.+...+
T Consensus 570 eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~--s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL 647 (859)
T KOG1241|consen 570 ELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKR--SAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGL 647 (859)
T ss_pred HHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCc--cccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHh
Confidence 2234788889999999999998855 25678899999999999999999999999999999988
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHccc--CCcchhhHHHHHHHH
Q 006201 558 HQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIR--SATAHEEAMLAIGAL 635 (657)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~--~~~v~~~~~~~l~~l 635 (657)
.+. ++. .++..+.+.+|.++++++.+ |.||.+.+|+.++++|+.+ +.+|+...+++||++
T Consensus 648 ~n~--------~e~----qVc~~aVglVgdl~raL~~~------i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDI 709 (859)
T KOG1241|consen 648 SNF--------QEY----QVCAAAVGLVGDLARALEDD------ILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDI 709 (859)
T ss_pred hcc--------hHH----HHHHHHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHccCccccccccchHHHHHHHH
Confidence 653 233 47888999999999999999 9999999999999999986 888999999999999
Q ss_pred HHHhchhhhhccccc
Q 006201 636 AYATGLCHHRRCCWG 650 (657)
Q Consensus 636 ~~~~g~~f~~y~~~~ 650 (657)
+-++|.+|.||++-.
T Consensus 710 AlaIg~~F~~Yl~~v 724 (859)
T KOG1241|consen 710 ALAIGADFEPYLEMV 724 (859)
T ss_pred HHHHHHhHHHHHHHH
Confidence 999999999999754
No 11
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-27 Score=234.28 Aligned_cols=581 Identities=17% Similarity=0.194 Sum_probs=408.5
Q ss_pred HhcCCChHHHHHHHHHHH-HHHhc------CcccHHHH-HHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhc
Q 006201 11 NAQSVDGTVRKQAEESLK-QYQEQ------NLPGFLLS-LAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRW 82 (657)
Q Consensus 11 ~~~s~d~~~r~~A~~~L~-~~~~~------~~~~~~~~-L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~ 82 (657)
.+.+.|-.+|+.|---|+ .+... +.-+|+.. ++.-+.+ .++-+|-..++++..++.+.. ...|
T Consensus 56 ~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l~~lgd--~~~lIr~tvGivITTI~s~~~-------~~~w 126 (885)
T KOG2023|consen 56 RAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIKSECLHGLGD--ASPLIRATVGIVITTIASTGG-------LQHW 126 (885)
T ss_pred cccccchhHHHHhhhhHhccccccccCCChHHHHHHHHHHHhhccC--chHHHHhhhhheeeeeecccc-------cccc
Confidence 344556677888877775 22221 11234433 4455555 356899988888887776432 2466
Q ss_pred ccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhh-------cCCCCCchHHHHHHHhhcCCChhHHHHHHHHH
Q 006201 83 LSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIE-------LPHKQWPELIGALLSNIHQLPPHTKQATLETL 155 (657)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~-------~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l 155 (657)
+ .+.+.|.+.|.+++......|..+|.+|+.-. ++..-..-++|.+++..+.+++.+|.-|+.|+
T Consensus 127 p--------elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cv 198 (885)
T KOG2023|consen 127 P--------ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCV 198 (885)
T ss_pred h--------hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhh
Confidence 3 35677888999988788888888888887742 11112356889999999999999999999999
Q ss_pred HHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHH
Q 006201 156 GYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKI 235 (657)
Q Consensus 156 ~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~ 235 (657)
..++-.- .+-+ -.+++..++.+++..+ |.+++||+..+.+|.-+.++-++.... +.+.+++.++...++.+++|
T Consensus 199 Nq~i~~~-~qal-~~~iD~Fle~lFalan--D~~~eVRk~vC~alv~Llevr~dkl~p--hl~~IveyML~~tqd~dE~V 272 (885)
T KOG2023|consen 199 NQFIIIQ-TQAL-YVHIDKFLEILFALAN--DEDPEVRKNVCRALVFLLEVRPDKLVP--HLDNIVEYMLQRTQDVDENV 272 (885)
T ss_pred hheeecC-cHHH-HHHHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHHhcHHhccc--chHHHHHHHHHHccCcchhH
Confidence 9876654 3434 4567888888888887 899999999999999988875554432 22578888888899999999
Q ss_pred HHHHHHHHHHHHHH--HHHhhHHhHHHHHHHHHHHHhcCChHHHHHH-HHHHHHHhHHH----HHhhhh-----------
Q 006201 236 RQAAFECLVAISST--YYEKLAPYIQDIFNITAKAVREDEEPVALQA-IEFWSSVCDEE----IDILEE----------- 297 (657)
Q Consensus 236 ~~~~~~~l~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a-~~~~~~l~~~~----~~~~~~----------- 297 (657)
...+|+.+..+++. ..+.+.||+++++|.++..|...+.++.... .+==..+-+.+ |.+.+.
T Consensus 273 ALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~ 352 (885)
T KOG2023|consen 273 ALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADD 352 (885)
T ss_pred HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccc
Confidence 99999999999986 4567889999999999987764443322111 00000000000 000000
Q ss_pred cC-CC---CCC----CCCCc-h---------hhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhh
Q 006201 298 YG-GD---FSG----DSDIP-C---------FYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVART 359 (657)
Q Consensus 298 ~~-~~---~~~----~~~~~-~---------~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~ 359 (657)
-. .+ +++ +++++ | .-+-...++.++|.+-..+.. +.|.+|.++.-+|+.+++.
T Consensus 353 eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~---------~~W~vrEagvLAlGAIAEG 423 (885)
T KOG2023|consen 353 EDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSS---------EEWKVREAGVLALGAIAEG 423 (885)
T ss_pred ccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCc---------chhhhhhhhHHHHHHHHHH
Confidence 00 00 011 12221 1 112344555566666555543 3499999999999999998
Q ss_pred cCC---CchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 006201 360 VGD---DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGR 436 (657)
Q Consensus 360 ~~~---~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~ 436 (657)
+-+ ..+|.++|++...+.|..+-+|.-+++.|+..+.-...+.-..|+..++..+++.+ -|.|.+|++||+.++..
T Consensus 424 cM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~l-lD~NK~VQEAAcsAfAt 502 (885)
T KOG2023|consen 424 CMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRL-LDSNKKVQEAACSAFAT 502 (885)
T ss_pred HhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHH-hcccHHHHHHHHHHHHH
Confidence 743 45678899999999998899999999999987764433344567788888888888 89999999999999998
Q ss_pred HHhhhccCcCCCccCCcccHHHHHHHHHHHccc----chHHHHHHHHHHHHHHhhccCCCCCCCCC-chhHHHHHHHHHH
Q 006201 437 MFEFLHGSTLETPIINQGNCQQIISVLLQSMKD----VPNVAEKACGALYFLAQGFEDAISPSSPL-TPFFQEIVQALLT 511 (657)
Q Consensus 437 l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d----~~~v~~~a~~al~~l~~~~~~~~~~~~~l-~~~~~~i~~~L~~ 511 (657)
+-+.... ...+|+..++..+..+++. |-.+-.- |++++.+.++. ..- ..|++.+++.|+.
T Consensus 503 leE~A~~-------eLVp~l~~IL~~l~~af~kYQ~KNLlILYD---AIgtlAdsvg~-----~Ln~~~YiqiLmPPLi~ 567 (885)
T KOG2023|consen 503 LEEEAGE-------ELVPYLEYILDQLVFAFGKYQKKNLLILYD---AIGTLADSVGH-----ALNKPAYIQILMPPLIE 567 (885)
T ss_pred HHHhccc-------hhHHHHHHHHHHHHHHHHHHhhcceehHHH---HHHHHHHHHHH-----hcCcHHHHHHhccHHHH
Confidence 8887653 3456999999999999884 2334444 45555555432 112 2478999999988
Q ss_pred hhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhh-------cCChhHHHHHHHHHHHHHHH
Q 006201 512 VTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQ-------KLSSDEREKQNEIQGLLCGC 584 (657)
Q Consensus 512 ~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 584 (657)
-.+.-...+.++- -+++|+++++++.+..|.||...+..-.+..++++.+.. .....|++ +.-.+++.
T Consensus 568 KW~~lsd~DKdLf-PLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkd----fiI~sLDL 642 (885)
T KOG2023|consen 568 KWELLSDSDKDLF-PLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKD----FIIVSLDL 642 (885)
T ss_pred HHHhcCcccchHH-HHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcc----eEEEeHHH
Confidence 7765443345664 689999999999999999998888887777777654311 11111221 22247899
Q ss_pred HHHHHHHhCCCcchhhHhhHHHH--HHHHHHHHHHcccCCcchhhHHHHHHHHHHHhchhhhhccccc
Q 006201 585 LQVIIQKLGSSEQTKYVFMQYAD--QMMGLFLRVFAIRSATAHEEAMLAIGALAYATGLCHHRRCCWG 650 (657)
Q Consensus 585 l~~l~~~~~~~~~~~~~~~~~~~--~i~~~l~~~l~~~~~~v~~~~~~~l~~l~~~~g~~f~~y~~~~ 650 (657)
++.++.++|.. +.+.+. .|+..++.++.+.-++||++++..+|.+.+..-+...||+...
T Consensus 643 ~SGLaegLg~~------ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~f 704 (885)
T KOG2023|consen 643 LSGLAEGLGSH------IEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADF 704 (885)
T ss_pred HhHHHHHhhhc------hHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 99999999999 888764 4999999999999999999999999999999877777776543
No 12
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.1e-24 Score=211.40 Aligned_cols=551 Identities=15% Similarity=0.161 Sum_probs=360.0
Q ss_pred ChhHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhh
Q 006201 1 MSAEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQ 80 (657)
Q Consensus 1 ~~~~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~ 80 (657)
|++++.|.+.+..+.|+.+|+.||..|++++++ |+|...+++++.+.+.+.++|+.|+++|||.+.+.|+...+..
T Consensus 1 ~~~ellqcf~qTldada~~rt~AE~~Lk~leKq--PgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~-- 76 (970)
T COG5656 1 MREELLQCFLQTLDADAGKRTIAEAMLKDLEKQ--PGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDG-- 76 (970)
T ss_pred ChHHHHHHHHHHhccCcchhhHHHHHHHHhhcC--CcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCC--
Confidence 789999999999999999999999999999999 9999999999998778999999999999999999997532210
Q ss_pred hcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhh
Q 006201 81 RWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICE 160 (657)
Q Consensus 81 ~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~ 160 (657)
.-....++.|+.++++++..+...+...|...-.++..|...++|...|+ +.|...+.+.+++......++.|+.++++
T Consensus 77 i~~Dek~e~K~~lienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~elfk 155 (970)
T COG5656 77 IKADEKSEAKKYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEELFK 155 (970)
T ss_pred CCCcccHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHHHH
Confidence 00123456666667777777777777888888888889999999977999 99999999999999999999999999998
Q ss_pred hccccccc-----hhhHhHHHHHHHh---ccCC--CCCCHHHHHHHHHHHHHHHhh-chhhcCChhhHHHHHHHHHhhcc
Q 006201 161 EVSSDAVE-----QDHVNKILTAVVQ---GMNA--SESNNDVRLAATRALYNALGF-AQANFSNDMERDYIMRVVCEATL 229 (657)
Q Consensus 161 ~~~~~~l~-----~~~~~~l~~~l~~---~l~~--~~~~~~vr~~al~~l~~~~~~-~~~~~~~~~~~~~il~~l~~~~~ 229 (657)
..+-..-+ .+....++|.+.+ .+.+ ...+.++-...++.+...+.+ ++..+........+++.....++
T Consensus 156 ayRwk~ndeq~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~~LP~~lsa~e~f~sw~ql~l~i~q 235 (970)
T COG5656 156 AYRWKYNDEQVDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSLRILQ 235 (970)
T ss_pred HHhhhccchHhhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhhCCHHHccchhhHHHHHHHHHHHc
Confidence 75322110 1233455555543 3332 123556666677776665433 23333222112334444333332
Q ss_pred -----------------CCcHHHHHHHHHHHHHHHHHHHHhh--------HHhHHHHHHHHHH----HHhcC---C---h
Q 006201 230 -----------------SPEVKIRQAAFECLVAISSTYYEKL--------APYIQDIFNITAK----AVRED---E---E 274 (657)
Q Consensus 230 -----------------~~~~~~~~~~~~~l~~l~~~~~~~~--------~~~~~~l~~~~~~----~~~~~---~---~ 274 (657)
+...+.++.++-.|.++...+.+.. ....-.+++.+++ .+... . -
T Consensus 236 kplp~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~tffkqie~wgqgqLWls 315 (970)
T COG5656 236 KPLPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFKQIEEWGQGQLWLS 315 (970)
T ss_pred CCCCHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeecc
Confidence 1223446677777777776653211 1111123333332 22210 0 1
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHH-HHHHHhhhhcCccc---cC-----------
Q 006201 275 PVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVP-LLLETLLKQEEDQD---QD----------- 339 (657)
Q Consensus 275 ~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~l~~~l~~~~~d~~---~d----------- 339 (657)
+.....+.+....|-... ..+.+++++++-++. .++..++-.++++| +|
T Consensus 316 d~~LYfi~~Fve~cv~~d----------------~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df 379 (970)
T COG5656 316 DIELYFIDFFVELCVDAD----------------QTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDF 379 (970)
T ss_pred hHHHHHHHHHHHHHhhhH----------------hhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcch
Confidence 122223332222222110 234566777665553 33444443332221 11
Q ss_pred -CCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhc-----C---cchhhHHHHHHHHHHhhcCCCC-CcchHHH-H
Q 006201 340 -EGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENIT-----K---QEWRQREAATYAFGSILEGPSP-EKLVPLV-N 408 (657)
Q Consensus 340 -~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~-----~---~~~~~r~aal~~l~~i~~~~~~-~~~~~~~-~ 408 (657)
++..++..+|..++-.+...-++..+..+++++...++ + .+.+..++|++.++++..-.+. ......+ .
T Consensus 380 ~d~g~spdlaal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~ 459 (970)
T COG5656 380 FDNGLSPDLAALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEY 459 (970)
T ss_pred hcCCCChhHHHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHH
Confidence 12234555677777777776677777777777776552 1 2467889999999998773221 2223333 3
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhh
Q 006201 409 IALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQG 487 (657)
Q Consensus 409 ~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~ 487 (657)
-+++.+++.+ +++--.+|.+||..++++.+.+++ ......+++...+.+++ +-.|+..|+.|+..|+..
T Consensus 460 fiv~hv~P~f-~s~ygfL~Srace~is~~eeDfkd---------~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~ 529 (970)
T COG5656 460 FIVNHVIPAF-RSNYGFLKSRACEFISTIEEDFKD---------NGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFN 529 (970)
T ss_pred HHHHHhhHhh-cCcccchHHHHHHHHHHHHHhccc---------chHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhc
Confidence 4678888899 999999999999999999887763 44567777778888886 468999999999999876
Q ss_pred ccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH----HHHHHhh
Q 006201 488 FEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMME----LHQTLEA 563 (657)
Q Consensus 488 ~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~----l~~~~~~ 563 (657)
.. ....+..+++..++.|+.+-+..+. + ..-.++..+++..++...||..+++..+++. ....+++
T Consensus 530 ~q----~h~k~sahVp~tmekLLsLSn~fei---D---~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~en 599 (970)
T COG5656 530 EQ----SHEKFSAHVPETMEKLLSLSNTFEI---D---PLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLEN 599 (970)
T ss_pred hh----hhHHHHhhhhHHHHHHHHhcccccc---h---HHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcC
Confidence 42 2355778899999999999887653 2 3456667888888888888888887777664 3344443
Q ss_pred hcC---ChhHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 006201 564 QKL---SSDEREKQNEIQGLLCGCLQVIIQKLGSS 595 (657)
Q Consensus 564 ~~~---~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 595 (657)
+.- ..||++ -....++.++.+++-++.+.
T Consensus 600 s~d~~s~vDDKq---maasGiL~T~~smiLSlen~ 631 (970)
T COG5656 600 SSDTSSVVDDKQ---MAASGILRTIESMILSLENR 631 (970)
T ss_pred CccccccccHHH---HHHHHHHHHHHHHHHhcccc
Confidence 311 112332 12335778888888887765
No 13
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.95 E-value=2.1e-23 Score=211.98 Aligned_cols=567 Identities=14% Similarity=0.152 Sum_probs=400.7
Q ss_pred HHHHHhcCCChHHHHHHHHHHH-HHHhc-------CcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHh
Q 006201 7 QILLNAQSVDGTVRKQAEESLK-QYQEQ-------NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFEL 78 (657)
Q Consensus 7 ~~l~~~~s~d~~~r~~A~~~L~-~~~~~-------~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~ 78 (657)
++++.+.|+|.+.|-+|...|. ++++. ..+..+..+++.|.+. +.++..+|...+.-.++
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~--ngEVQnlAVKClg~lvs---------- 76 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDK--NGEVQNLAVKCLGPLVS---------- 76 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHh----------
Confidence 8999999999999999999995 66653 1345667788888873 67888888887776554
Q ss_pred hhhcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC-------CCCchHHHHHHHhhcC--CChhHHH
Q 006201 79 VQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH-------KQWPELIGALLSNIHQ--LPPHTKQ 149 (657)
Q Consensus 79 ~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~-------~~~~~l~~~l~~~l~~--~~~~~~~ 149 (657)
.+.++..+.+.+.|...+.+..+..|-..+-.+........|. +..+.+.|.+.+.+.. +...++-
T Consensus 77 -----Kvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~ 151 (1233)
T KOG1824|consen 77 -----KVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKC 151 (1233)
T ss_pred -----hchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHH
Confidence 3567778889999999988888888887777777666655441 1234455555554432 2334677
Q ss_pred HHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhc-
Q 006201 150 ATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEAT- 228 (657)
Q Consensus 150 ~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~- 228 (657)
.++..+..+...+ +..+ .+....++..++-.+. .+...||+.|+.+++.+..+.+.. ....+++.+..-+
T Consensus 152 e~lDil~d~lsr~-g~ll-~~fh~~il~~l~~ql~--s~R~aVrKkai~~l~~la~~~~~~-----ly~~li~~Ll~~L~ 222 (1233)
T KOG1824|consen 152 EVLDILADVLSRF-GTLL-PNFHLSILKCLLPQLQ--SPRLAVRKKAITALGHLASSCNRD-----LYVELIEHLLKGLS 222 (1233)
T ss_pred HHHHHHHHHHHhh-cccC-cchHHHHHHHHhhccc--ChHHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHhccC
Confidence 7788888777777 5555 3333455555555555 577899999999999998876432 1245666665544
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHH---hcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCC
Q 006201 229 LSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAV---REDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGD 305 (657)
Q Consensus 229 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~ 305 (657)
+..........++|++.++...+..+..|+..+++.+.... +.++++.|..+++.+..+...
T Consensus 223 ~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~r--------------- 287 (1233)
T KOG1824|consen 223 NRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRR--------------- 287 (1233)
T ss_pred CCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHh---------------
Confidence 33445555688999999999999999999999998887765 567888998888877776652
Q ss_pred CCCchhhHHHhhhhhHHHHHHHHhhhhc-------Cc-----------c-------ccCCCcchHhhhHHHHHHHHHhhc
Q 006201 306 SDIPCFYFIKHALPVLVPLLLETLLKQE-------ED-----------Q-------DQDEGAWNIAMAGGTCLGLVARTV 360 (657)
Q Consensus 306 ~~~~~~~~~~~~l~~l~~~l~~~l~~~~-------~d-----------~-------~~d~~~~~~r~~a~~~L~~l~~~~ 360 (657)
++.-+.++.++++..++++++|.+ || + ||||.+|.+|++|++|+..+...-
T Consensus 288 ----cp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR 363 (1233)
T KOG1824|consen 288 ----CPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSR 363 (1233)
T ss_pred ----ChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhcc
Confidence 234456677788888888887532 11 0 123447999999999999887432
Q ss_pred CC-------Cchhc----------------------------------------------------------hHHHHHhh
Q 006201 361 GD-------DIVPL----------------------------------------------------------VMPFVEEN 375 (657)
Q Consensus 361 ~~-------~~~~~----------------------------------------------------------l~~~l~~~ 375 (657)
.+ .+-|. ++..+...
T Consensus 364 ~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~q 443 (1233)
T KOG1824|consen 364 LEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQ 443 (1233)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHH
Confidence 10 11111 11112222
Q ss_pred hcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHHHhhhccCcCCCccCCc
Q 006201 376 ITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPN--NHVKDTTAWTLGRMFEFLHGSTLETPIINQ 453 (657)
Q Consensus 376 l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 453 (657)
+.+..-+.|..++..|..++... ++...++++.++|.+...+ +|.+ ...+..++..+.......+ |....
T Consensus 444 lr~ks~kt~~~cf~lL~eli~~l-p~~l~~~~~slvpgI~~~l-~DkSsss~~ki~~L~fl~~~L~s~~------p~~fh 515 (1233)
T KOG1824|consen 444 LREKSVKTRQGCFLLLTELINVL-PGALAQHIPSLVPGIIYSL-NDKSSSSNLKIDALVFLYSALISHP------PEVFH 515 (1233)
T ss_pred HhhccccchhhHHHHHHHHHHhC-cchhhhcccccchhhhhhc-CCccchHHHHHHHHHHHHHHHhcCC------hhhcc
Confidence 22222334445555555555544 5677788889999999999 7754 4556666655554444443 44667
Q ss_pred ccHHHHHHHHHHHcccc-hHHHHHHHHHHHHHHhhccCCCC-CCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHH
Q 006201 454 GNCQQIISVLLQSMKDV-PNVAEKACGALYFLAQGFEDAIS-PSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETL 531 (657)
Q Consensus 454 ~~~~~il~~l~~~l~d~-~~v~~~a~~al~~l~~~~~~~~~-~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al 531 (657)
++++.+.+.+..+.+|+ +++...|......+++.+.+-.. ..-+..||+.+++...++.+...+. +..+|+.++.++
T Consensus 516 p~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~-DqeVkeraIscm 594 (1233)
T KOG1824|consen 516 PHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDS-DQEVKERAISCM 594 (1233)
T ss_pred cchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccc-cHHHHHHHHHHH
Confidence 88888889998888874 88988998888888887755201 1235678999999999998887766 789999999999
Q ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHH
Q 006201 532 NEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMG 611 (657)
Q Consensus 532 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~ 611 (657)
|.++...|+......+..+|.+++.+++-+ .|-.+..+++.++.+--.-+ ..|....+++
T Consensus 595 gq~i~~fgD~l~~eL~~~L~il~eRl~nEi---------------TRl~AvkAlt~Ia~S~l~i~-----l~~~l~~il~ 654 (1233)
T KOG1824|consen 595 GQIIANFGDFLGNELPRTLPILLERLGNEI---------------TRLTAVKALTLIAMSPLDID-----LSPVLTEILP 654 (1233)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHhchh---------------HHHHHHHHHHHHHhccceee-----hhhhHHHHHH
Confidence 999999997777778888888888776532 24456677777776533332 6688888888
Q ss_pred HHHHHHcccCCcchhhHHHHHHHHHHHhchhhhhcc
Q 006201 612 LFLRVFAIRSATAHEEAMLAIGALAYATGLCHHRRC 647 (657)
Q Consensus 612 ~l~~~l~~~~~~v~~~~~~~l~~l~~~~g~~f~~y~ 647 (657)
.+...+......+|...+.++..++..+|..+.+|+
T Consensus 655 ~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~ 690 (1233)
T KOG1824|consen 655 ELASFLRKNQRALRLATLTALDKLVKNYSDSIPAEL 690 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 888888877677888999999999999988887765
No 14
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=7.3e-24 Score=210.49 Aligned_cols=613 Identities=13% Similarity=0.140 Sum_probs=385.2
Q ss_pred ChhHHHHHHHHhcCC--ChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHh
Q 006201 1 MSAEVTQILLNAQSV--DGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFEL 78 (657)
Q Consensus 1 ~~~~l~~~l~~~~s~--d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~ 78 (657)
|.+++.|++.+...| |+..|++|.+.+++++.. |..+..+++++.+.+.++.+|+.+...|...++.+
T Consensus 1 ~mddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsS--p~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrek-------- 70 (980)
T KOG2021|consen 1 MMDDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSS--PNAWEICIELLINETSNDLVKFYCLQTLIELVREK-------- 70 (980)
T ss_pred CchHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCC--ccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHh--------
Confidence 556899999999877 789999999999999998 99999999999987789999999999999988632
Q ss_pred hhhcccCChHHHHHHHHHHHHhc-----CCC----ChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCCh-hHH
Q 006201 79 VQRWLSLDSSVKAQIKSFILKTL-----SSP----AHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPP-HTK 148 (657)
Q Consensus 79 ~~~~~~l~~~~~~~i~~~ll~~l-----~~~----~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~-~~~ 148 (657)
+...+......||..+...+ .++ .+.++++++++++.+...+|| ..|+.++..+...+.-+.. .-.
T Consensus 71 ---yne~nl~elqlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp-~~WnsfF~dlmsv~~~~s~~~~~ 146 (980)
T KOG2021|consen 71 ---YNEANLNELQLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYP-DCWNSFFDDLMSVFQVDSAISGL 146 (980)
T ss_pred ---hccCCHHHHHHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhcccchhhH
Confidence 23478888889999887654 344 479999999999999999999 6899999999888764322 223
Q ss_pred HHHHHHHHHHhhhcc-------ccccc----------hhhHhHHHHHHHhccCC--CCCCHHHHHHHHHHHHHHHhhchh
Q 006201 149 QATLETLGYICEEVS-------SDAVE----------QDHVNKILTAVVQGMNA--SESNNDVRLAATRALYNALGFAQA 209 (657)
Q Consensus 149 ~~~l~~l~~i~~~~~-------~~~l~----------~~~~~~l~~~l~~~l~~--~~~~~~vr~~al~~l~~~~~~~~~ 209 (657)
..-++++-.|-.+.. ++.+. ...+.+++....+.+.. ...++++-..+++|++++++|+.-
T Consensus 147 dfflkvllaIdsEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdI 226 (980)
T KOG2021|consen 147 DFFLKVLLAIDSEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDI 226 (980)
T ss_pred HHHHHHHHHhhhHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhh
Confidence 444555555444331 11110 11234455554444432 123788899999999999999875
Q ss_pred hcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHh--------HHHHHHHHH---------------
Q 006201 210 NFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPY--------IQDIFNITA--------------- 266 (657)
Q Consensus 210 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--------~~~l~~~~~--------------- 266 (657)
+... .+.+++.+..+++ .+++|.++|.|+..++++. +.|. +.+..+.+.
T Consensus 227 nLIa---Nd~f~nLLy~fl~--ieelR~aac~cilaiVsKk---MkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~ 298 (980)
T KOG2021|consen 227 NLIA---NDYFLNLLYKFLN--IEELRIAACNCILAIVSKK---MKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWES 298 (980)
T ss_pred hhhh---chhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcC---CChhHHHHHHHHHHHHHHHHhhhccccccCchHHHH
Confidence 4432 2678888888774 6788999999999888653 1111 101111110
Q ss_pred --HH---------------HhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCC-CC-Cc-hhhH-------------
Q 006201 267 --KA---------------VREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGD-SD-IP-CFYF------------- 313 (657)
Q Consensus 267 --~~---------------~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~-~~-~~-~~~~------------- 313 (657)
+. .++.+..++..+...+..+... ..+....+.+.. .+ ++ +.+|
T Consensus 299 vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpy---llq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~ 375 (980)
T KOG2021|consen 299 VSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPY---LLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSP 375 (980)
T ss_pred HHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHH---HHHHhcccchhhHHHHHHHHHHHHHHHhhcccccch
Confidence 00 0111222222222221111111 111111111100 00 00 0000
Q ss_pred HHhhhhhHHHHHHHHhhhhc-----Cc-cc-cCC-CcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcC---cchh
Q 006201 314 IKHALPVLVPLLLETLLKQE-----ED-QD-QDE-GAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITK---QEWR 382 (657)
Q Consensus 314 ~~~~l~~l~~~l~~~l~~~~-----~d-~~-~d~-~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~---~~~~ 382 (657)
-+..+.+++..+++.+++.+ |+ +. |++ ..-++|+.-...++++....|+.++..+-..+...+.+ .+|.
T Consensus 376 qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swq 455 (980)
T KOG2021|consen 376 QKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQ 455 (980)
T ss_pred hhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHH
Confidence 12234455666666666543 22 11 111 12378888888888888877766666776666665543 4699
Q ss_pred hHHHHHHHHHHhhcCCCC-------Ccch--HHHHHHHHHHHH-HhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCC
Q 006201 383 QREAATYAFGSILEGPSP-------EKLV--PLVNIALNFMLT-ALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIIN 452 (657)
Q Consensus 383 ~r~aal~~l~~i~~~~~~-------~~~~--~~~~~i~~~l~~-~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 452 (657)
.-+.|++.+..++++... ..+. ..+..+++.++. .+..++|+.|.--.+..+-++.+++. ..
T Consensus 456 evE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~--------~e 527 (980)
T KOG2021|consen 456 EVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFS--------TE 527 (980)
T ss_pred HHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHh--------cc
Confidence 999999999998886421 1111 234455555554 22278999999999999999998885 44
Q ss_pred cccHHHHHHHHHHH--ccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccc---------cchh
Q 006201 453 QGNCQQIISVLLQS--MKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHRE---------DAGE 520 (657)
Q Consensus 453 ~~~~~~il~~l~~~--l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~---------~~~~ 520 (657)
.++++.++.+++.. ++. +..||.+|...+.+|++.+. +.+.||+++++..+...+... +.+.
T Consensus 528 sq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLk------kqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~ 601 (980)
T KOG2021|consen 528 SQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLK------KQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTI 601 (980)
T ss_pred hhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHcCcCCCcCcccccccc
Confidence 66778787777653 443 68899999999999999874 468899999999998887211 1111
Q ss_pred hhHHHHHHHHHHHHHHhccc---ccHHHHHHHHHHHHHHHHHH-HhhhcCChhHH-HHHHHHHHHHHHHHHHHHHHhCCC
Q 006201 521 SRLRTAAYETLNEVVRCSTD---ETAPMVMQLVPLIMMELHQT-LEAQKLSSDER-EKQNEIQGLLCGCLQVIIQKLGSS 595 (657)
Q Consensus 521 ~~~~~~~~~al~~l~~~~~~---~~~~~~~~l~~~l~~~l~~~-~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~ 595 (657)
.+-+...++++|.++....- .-..|...++.+++....-. ......++++. ....+.. .++-.+++++++....
T Consensus 602 fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~-~~lmaig~lakgf~~r 680 (980)
T KOG2021|consen 602 FDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECH-HILMAIGTLAKGFHIR 680 (980)
T ss_pred ccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHH-HHHHHHHHHhhccccc
Confidence 22234788999988765432 23346665555433222111 11111123332 2222222 3566777777776544
Q ss_pred cch--hhHhhHHHHHHHHHHHHHHccc--CCcchhhHHHHHHHHHHHhchhhhhcccccccc
Q 006201 596 EQT--KYVFMQYADQMMGLFLRVFAIR--SATAHEEAMLAIGALAYATGLCHHRRCCWGLMQ 653 (657)
Q Consensus 596 ~~~--~~~~~~~~~~i~~~l~~~l~~~--~~~v~~~~~~~l~~l~~~~g~~f~~y~~~~~~~ 653 (657)
-.+ +....-....+.+.++..|+.. ...+|..+-..+++++.++|+++.||+|..+.+
T Consensus 681 lvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~ 742 (980)
T KOG2021|consen 681 LVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIEL 742 (980)
T ss_pred CcchhcccHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHH
Confidence 211 1112233445555556666552 456888888999999999999999999987654
No 15
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.94 E-value=1.6e-22 Score=195.07 Aligned_cols=528 Identities=13% Similarity=0.157 Sum_probs=344.6
Q ss_pred CCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHhhhcCC--
Q 006201 50 EKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPA-HDARSTASQVVAKVAGIELPH-- 126 (657)
Q Consensus 50 ~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~-~~vr~~aa~~l~~i~~~~~~~-- 126 (657)
+.+++...+|+.++..+-+.. ++...-..+...+.....++. ..++..+..+++.++....|+
T Consensus 105 s~epr~~~~Aaql~aaIA~~E--------------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~l 170 (858)
T COG5215 105 SPEPRFCTMAAQLLAAIARME--------------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDL 170 (858)
T ss_pred CCccHHHHHHHHHHHHHHHhh--------------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHH
Confidence 346777777777776543321 222222234445555666654 577777778888888776662
Q ss_pred -CCCchHHHHHHHhhcC--CChhHHHHHHHHHHHHhhhccccccc-hhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHH
Q 006201 127 -KQWPELIGALLSNIHQ--LPPHTKQATLETLGYICEEVSSDAVE-QDHVNKILTAVVQGMNASESNNDVRLAATRALYN 202 (657)
Q Consensus 127 -~~~~~l~~~l~~~l~~--~~~~~~~~~l~~l~~i~~~~~~~~l~-~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~ 202 (657)
...+.++-.+...... ++..+|..++.+|..-+..+ ...+. ....+.+++.+...-+ .++.+++.+|+.||..
T Consensus 171 i~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv-~~nf~~E~erNy~mqvvceatq--~~d~e~q~aafgCl~k 247 (858)
T COG5215 171 IQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFV-QGNFCYEEERNYFMQVVCEATQ--GNDEELQHAAFGCLNK 247 (858)
T ss_pred HHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHH-HHhhcchhhhchhheeeehhcc--CCcHHHHHHHHHHHHH
Confidence 1334444444443322 35678999999998755444 22221 1233444555554545 6788999999999999
Q ss_pred HHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHH--hhHHh---------------HHHHHHHH
Q 006201 203 ALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYE--KLAPY---------------IQDIFNIT 265 (657)
Q Consensus 203 ~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~---------------~~~l~~~~ 265 (657)
++...=+.+. ..--+-+.....+.+.+++.++...+++.+..+++..-+ .-..+ +.+++|.+
T Consensus 248 im~LyY~fm~-~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~l 326 (858)
T COG5215 248 IMMLYYKFMQ-SYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPEL 326 (858)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHH
Confidence 8763211110 000022333445566788999999999999888765321 11111 23345544
Q ss_pred HHHHhc-------CChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCcccc
Q 006201 266 AKAVRE-------DEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQ 338 (657)
Q Consensus 266 ~~~~~~-------~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~ 338 (657)
++.+.. ++.++...|-..+-.+++.. ...++.+++..+-+.++
T Consensus 327 L~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~----------------------gd~i~~pVl~FvEqni~-------- 376 (858)
T COG5215 327 LSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK----------------------GDKIMRPVLGFVEQNIR-------- 376 (858)
T ss_pred HHHHHhcCCCccccccchhhhHHHHHHHHHHHh----------------------hhHhHHHHHHHHHHhcc--------
Confidence 444432 11122222222222222210 01112222333333333
Q ss_pred CCCcchHhhhHHHHHHHHHhhcC----CCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchH--HHHHHHH
Q 006201 339 DEGAWNIAMAGGTCLGLVARTVG----DDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVP--LVNIALN 412 (657)
Q Consensus 339 d~~~~~~r~~a~~~L~~l~~~~~----~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~--~~~~i~~ 412 (657)
.++|.-|.+|.-+++++...-. ..++|..+|-+.....|+.-.+++.+.+|+|.|++.. +..+.| ++...+.
T Consensus 377 -~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v-a~~i~p~~Hl~~~vs 454 (858)
T COG5215 377 -SESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV-AMIISPCGHLVLEVS 454 (858)
T ss_pred -CchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH-HHhcCccccccHHHH
Confidence 2459999999999988876543 3567777888887777887778899999999999865 344433 4445555
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHcc--c-chHHHHHHHHHHHHHHhhcc
Q 006201 413 FMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK--D-VPNVAEKACGALYFLAQGFE 489 (657)
Q Consensus 413 ~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~--d-~~~v~~~a~~al~~l~~~~~ 489 (657)
..+-.+ . ++|++.-+++|....+.+.++...-+.+.....+...++..|+++-. + +...|..+..+|++++..+.
T Consensus 455 a~liGl-~-D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~ 532 (858)
T COG5215 455 ASLIGL-M-DCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICP 532 (858)
T ss_pred HHHhhh-h-ccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcc
Confidence 555555 4 47888899999999999988621111122333455555555555433 2 36778888888888876544
Q ss_pred CCC--------------------------------------------------CCCCCCchhHHHHHHHHHHhhccccch
Q 006201 490 DAI--------------------------------------------------SPSSPLTPFFQEIVQALLTVTHREDAG 519 (657)
Q Consensus 490 ~~~--------------------------------------------------~~~~~l~~~~~~i~~~L~~~l~~~~~~ 519 (657)
+.. -.+.++++.-+.++..+++.+++.+
T Consensus 533 d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~-- 610 (858)
T COG5215 533 DAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTK-- 610 (858)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccC--
Confidence 320 3466678888888888899888775
Q ss_pred hhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchh
Q 006201 520 ESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTK 599 (657)
Q Consensus 520 ~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 599 (657)
...+...++.+++.+..++++.|..|.+.+.|.+...++.. |+ .+...+...++.+++.+|.+
T Consensus 611 ~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~---------d~----~v~~~avglvgdlantl~~d---- 673 (858)
T COG5215 611 PTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCT---------DR----FVLNSAVGLVGDLANTLGTD---- 673 (858)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcch---------hH----HHHHHHHHHHHHHHHHhhhh----
Confidence 34566789999999999999999999999999999988642 33 35667999999999999999
Q ss_pred hHhhHHHHHHHHHHHHHHccc--CCcchhhHHHHHHHHHHHhchhhhhccccc
Q 006201 600 YVFMQYADQMMGLFLRVFAIR--SATAHEEAMLAIGALAYATGLCHHRRCCWG 650 (657)
Q Consensus 600 ~~~~~~~~~i~~~l~~~l~~~--~~~v~~~~~~~l~~l~~~~g~~f~~y~~~~ 650 (657)
|.+|...+++.+.++++.+ +.+++...+.++|+++.++|.+|.+||+-.
T Consensus 674 --f~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~i 724 (858)
T COG5215 674 --FNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMI 724 (858)
T ss_pred --HHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9999999999999999885 788999999999999999999999999864
No 16
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.92 E-value=1.2e-19 Score=185.07 Aligned_cols=606 Identities=17% Similarity=0.200 Sum_probs=418.8
Q ss_pred HHHHHHHHhc-CCChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhcC--CCChhHHHHHHHHHhhhcccchhhh------
Q 006201 4 EVTQILLNAQ-SVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVND--EKPVESRKLAGLILKNALDAKEQHR------ 74 (657)
Q Consensus 4 ~l~~~l~~~~-s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~--~~~~~~r~~a~~~l~~~i~~~~~~~------ 74 (657)
.+..++-.++ +.+++++.-|.+.+.=+.++-++.-+..+.+-|+++ +...+.|-.+++.||..+..-....
T Consensus 47 kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~ 126 (1233)
T KOG1824|consen 47 KVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAA 126 (1233)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcccccccc
Confidence 3455555554 468899999999998555543344455555544432 2345666666666666543322100
Q ss_pred ------------------------------HHHhhhhcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhc
Q 006201 75 ------------------------------KFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIEL 124 (657)
Q Consensus 75 ------------------------------~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~ 124 (657)
-.....++..+-++....+-..++..+.++-..||+.++.+|+.++...
T Consensus 127 tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~- 205 (1233)
T KOG1824|consen 127 TVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSC- 205 (1233)
T ss_pred HHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhc-
Confidence 0000112222223344444455555566667899999999999999986
Q ss_pred CCCCCchHHHHHHHhhcCC-ChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCC-CCCHHHHHHHHHHHHH
Q 006201 125 PHKQWPELIGALLSNIHQL-PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNAS-ESNNDVRLAATRALYN 202 (657)
Q Consensus 125 ~~~~~~~l~~~l~~~l~~~-~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~-~~~~~vr~~al~~l~~ 202 (657)
+...+.+++..+...+... ++...+..+.|++.+++.. +..+ ..|...++|.+.+..+.. ..+.+.|...++++..
T Consensus 206 ~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~a-g~r~-~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~ 283 (1233)
T KOG1824|consen 206 NRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQA-GHRF-GSHLDKIVPLVADYCNKIEEDDDELREYCLQALES 283 (1233)
T ss_pred CHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHh-cchh-hcccchhhHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 4357788888888887654 5566678899999999988 6777 688899999998877421 5677999999999999
Q ss_pred HHhhchhhcCChhhHHHHHHHHHhhcc----------------------------------CCcHHHHHHHHHHHHHHHH
Q 006201 203 ALGFAQANFSNDMERDYIMRVVCEATL----------------------------------SPEVKIRQAAFECLVAISS 248 (657)
Q Consensus 203 ~~~~~~~~~~~~~~~~~il~~l~~~~~----------------------------------~~~~~~~~~~~~~l~~l~~ 248 (657)
++.+.+..... +++.+++.+...+. +-+|.||.++.+|+..++.
T Consensus 284 fl~rcp~ei~p--~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~Is 361 (1233)
T KOG1824|consen 284 FLRRCPKEILP--HVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVIS 361 (1233)
T ss_pred HHHhChhhhcc--cchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHh
Confidence 88766543321 22344444333211 1238899999999999999
Q ss_pred HHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCC-C--CCCCCCCchhhHHHhhhhhHHHHH
Q 006201 249 TYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGG-D--FSGDSDIPCFYFIKHALPVLVPLL 325 (657)
Q Consensus 249 ~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~l~~l~~~l 325 (657)
...+.+..+.+.+-+.++..+++.+++++...++.+..+-...+...+.+.+ + .+++.. ...++++...+.|+..+
T Consensus 362 SR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~-s~~~~L~~~~~~iVkai 440 (1233)
T KOG1824|consen 362 SRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTP-SDLSMLSDQVPLIVKAI 440 (1233)
T ss_pred ccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCc-cchHHHHhhhHHHHHHH
Confidence 9988888888899999999999999999999888776665543222221211 0 011110 01244444444455555
Q ss_pred HHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCC---CchhchHHHHHhhhcCcc--hhhHHHHHHHHHHhhcCCCC
Q 006201 326 LETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD---DIVPLVMPFVEENITKQE--WRQREAATYAFGSILEGPSP 400 (657)
Q Consensus 326 ~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~~~l~~~~--~~~r~aal~~l~~i~~~~~~ 400 (657)
-+.++ + .+-..|..+...|..+...+++ +-++.++|-+...+.|.+ ...+..++..+..+..++++
T Consensus 441 ~~qlr---~------ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p 511 (1233)
T KOG1824|consen 441 QKQLR---E------KSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPP 511 (1233)
T ss_pred HHHHh---h------ccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCCh
Confidence 44444 1 1234566777888888877754 456677777777776643 45666777777766666678
Q ss_pred CcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHcc--c-chHHHHHH
Q 006201 401 EKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK--D-VPNVAEKA 477 (657)
Q Consensus 401 ~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~--d-~~~v~~~a 477 (657)
+.+.++++.+.+.+.... .|+-+.|-..|+.+.+++++.+.....+......++++.++...++.|. | +.+||.+|
T Consensus 512 ~~fhp~~~~Ls~~v~~aV-~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkera 590 (1233)
T KOG1824|consen 512 EVFHPHLSALSPPVVAAV-GDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERA 590 (1233)
T ss_pred hhcccchhhhhhHHHHHh-cCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHH
Confidence 999999999999999999 9999999999999999999988622111114567899999999999887 3 58999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHH
Q 006201 478 CGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD-ETAPMVMQLVPLIMME 556 (657)
Q Consensus 478 ~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~-~~~~~~~~l~~~l~~~ 556 (657)
..+++.++-.+++ .+...++.+++.++.-+++ +-.|..+..|+..++.+--. +..|....+++.+...
T Consensus 591 Iscmgq~i~~fgD------~l~~eL~~~L~il~eRl~n-----EiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~f 659 (1233)
T KOG1824|consen 591 ISCMGQIIANFGD------FLGNELPRTLPILLERLGN-----EITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASF 659 (1233)
T ss_pred HHHHHHHHHHHhh------hhhhhhHHHHHHHHHHHhc-----hhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHH
Confidence 9999999988754 4667888888888888874 34577899999888876544 3568888899998888
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHH-HHHHHHHHHHHHcccCCcchhhHHHHHHHH
Q 006201 557 LHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQY-ADQMMGLFLRVFAIRSATAHEEAMLAIGAL 635 (657)
Q Consensus 557 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~v~~~~~~~l~~l 635 (657)
+.+.. + .+|...+.++..++..+++. +..+ ++.++..+...+++.+-.+.+.++.++..+
T Consensus 660 lrK~~---------r----~lr~~~l~a~~~L~~~~~~~------~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl 720 (1233)
T KOG1824|consen 660 LRKNQ---------R----ALRLATLTALDKLVKNYSDS------IPAELLEAVLVELPPLISESDLHVTQLAVAFLTTL 720 (1233)
T ss_pred HHHHH---------H----HHHHHHHHHHHHHHHHHhcc------ccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 87642 1 46667788888999998887 6655 456778888888887777778888888877
Q ss_pred HHHhc-----------hhhhhccccccccCC
Q 006201 636 AYATG-----------LCHHRRCCWGLMQGS 655 (657)
Q Consensus 636 ~~~~g-----------~~f~~y~~~~~~~~~ 655 (657)
+.... +.....+.-++.||+
T Consensus 721 ~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~ 751 (1233)
T KOG1824|consen 721 AIIQPSSLLKISNPILDEIIRLLRSPLLQGG 751 (1233)
T ss_pred HhcccHHHHHHhhhhHHHHHHHhhCccccch
Confidence 75432 334444555666654
No 17
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.91 E-value=8.2e-20 Score=181.49 Aligned_cols=608 Identities=14% Similarity=0.156 Sum_probs=411.1
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhc-CcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHH----
Q 006201 2 SAEVTQILLNAQSVDGTVRKQAEESLKQYQEQ-NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKF---- 76 (657)
Q Consensus 2 ~~~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~-~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~---- 76 (657)
|..+..+|-...++.+..|+.|-..|..-..+ .+......++.++.+.+.+++.|++...++-+.+.+-.+-...
T Consensus 362 Er~i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlvrpYVhk 441 (1172)
T KOG0213|consen 362 ERKIMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHK 441 (1172)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccchhceee
Confidence 44677888888899999999999999744332 3344677788888888899999999888877766553321100
Q ss_pred Hh-hhhcccCChHHHH-----HHHHHHHH---------hc----CCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHH
Q 006201 77 EL-VQRWLSLDSSVKA-----QIKSFILK---------TL----SSPAHDARSTASQVVAKVAGIELPHKQWPELIGALL 137 (657)
Q Consensus 77 ~~-~~~~~~l~~~~~~-----~i~~~ll~---------~l----~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~ 137 (657)
.. ...-..++++... +|..+|.. .+ .+.++.||+..+.+++.++... ..|.++|+|.
T Consensus 442 ILvViepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasal----gip~llpfLk 517 (1172)
T KOG0213|consen 442 ILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASAL----GIPALLPFLK 517 (1172)
T ss_pred eEEEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHh----CcHHHHHHHH
Confidence 00 0000123333332 12222221 22 1236899999999999999986 6789999999
Q ss_pred HhhcCC-ChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhch----hhcC
Q 006201 138 SNIHQL-PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQ----ANFS 212 (657)
Q Consensus 138 ~~l~~~-~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~----~~~~ 212 (657)
..+.|. +++.|..+++|...|+.......+ +|+..++..+..++. |.+..||..+..++..+.+... +.|.
T Consensus 518 avc~SkkSwqaRhTgIkivqqIail~Gcsvl--phl~~lv~ii~~gl~--De~qkVR~itAlalsalaeaa~Pygie~fD 593 (1172)
T KOG0213|consen 518 AVCGSKKSWQARHTGIKIVQQIAILSGCSVL--PHLKPLVKIIEHGLK--DEQQKVRTITALALSALAEAATPYGIEQFD 593 (1172)
T ss_pred HHhccccchhhhchhhHHHHHHHHHhcchhh--hhhHHHHHHHHHhhc--ccchhhhhHHHHHHHHHHHhcCCcchHHHH
Confidence 999987 889999999999999988754555 889999999999999 7888999877777776654211 0110
Q ss_pred C--------------------------------hh----hHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHH---Hh
Q 006201 213 N--------------------------------DM----ERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYY---EK 253 (657)
Q Consensus 213 ~--------------------------------~~----~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~---~~ 253 (657)
. .. +...++-++.+-.+.+|++.++.+++.+.+.+...+ .+
T Consensus 594 sVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y 673 (1172)
T KOG0213|consen 594 SVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAY 673 (1172)
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHH
Confidence 0 00 001234455556678899999999998888775431 11
Q ss_pred hH-HhHHH-------------------HHHHHHH----------------HHhcCChHHHHHHHHHHHHHhHHH----HH
Q 006201 254 LA-PYIQD-------------------IFNITAK----------------AVREDEEPVALQAIEFWSSVCDEE----ID 293 (657)
Q Consensus 254 ~~-~~~~~-------------------l~~~~~~----------------~~~~~~~~v~~~a~~~~~~l~~~~----~~ 293 (657)
+. ..++. ++..... .++++.+.+|..+++....+.... .+
T Consensus 674 ~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~did 753 (1172)
T KOG0213|consen 674 IRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADID 753 (1172)
T ss_pred HhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhcccccccc
Confidence 11 11122 2222111 123445567776666555544211 00
Q ss_pred ------hhhh----cCCCCCCCCCCc--h--------hhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHH
Q 006201 294 ------ILEE----YGGDFSGDSDIP--C--------FYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCL 353 (657)
Q Consensus 294 ------~~~~----~~~~~~~~~~~~--~--------~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L 353 (657)
+.+. +......+. +. . ....++++++|+..++..+.... -.+|..|++++
T Consensus 754 erleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnks---------a~vRqqaadli 823 (1172)
T KOG0213|consen 754 ERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKS---------AKVRQQAADLI 823 (1172)
T ss_pred HHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCC---------hhHHHHHHHHH
Confidence 0000 000000011 11 0 11236777777777777775322 36888999999
Q ss_pred HHHHhhcC----CCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHH
Q 006201 354 GLVARTVG----DDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDT 429 (657)
Q Consensus 354 ~~l~~~~~----~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~ 429 (657)
++++.... +..+..+-..+.+++....+.+--..+-|+.+|....+...+.+-+..++|.+...| ++.|..|...
T Consensus 824 s~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPIL-knrheKVqen 902 (1172)
T KOG0213|consen 824 SSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPIL-KNRHEKVQEN 902 (1172)
T ss_pred HHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhh-hhhHHHHHHH
Confidence 99987653 346788888888999887788878888888888877666677777899999999999 9999999999
Q ss_pred HHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCC----------------
Q 006201 430 TAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAI---------------- 492 (657)
Q Consensus 430 a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~---------------- 492 (657)
+..++|.++...+ .+....-+-.+.-.|+..|.. +..+|.+|..+++.+.+..++++
T Consensus 903 ~IdLvg~Iadrgp------E~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~ 976 (1172)
T KOG0213|consen 903 CIDLVGTIADRGP------EYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQN 976 (1172)
T ss_pred HHHHHHHHHhcCc------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHh
Confidence 9999999999865 245555666677777777776 68899999999998888776541
Q ss_pred --CCCCCCc---hhH--HHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhc
Q 006201 493 --SPSSPLT---PFF--QEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQK 565 (657)
Q Consensus 493 --~~~~~l~---~~~--~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 565 (657)
+..-.+. .+. -.+++.|++ ++...+-+++.-++.+++.+.+..|+.-..|+-.+.|.+-.++..
T Consensus 977 RvcTtvaIaIVaE~c~pFtVLPalmn---eYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmD------ 1047 (1172)
T KOG0213|consen 977 RVCTTVAIAIVAETCGPFTVLPALMN---EYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMD------ 1047 (1172)
T ss_pred chhhhhhhhhhhhhcCchhhhHHHHh---hccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhcc------
Confidence 0000010 110 033444443 444335688889999999999999998888999888887776642
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHcccCCcchhhHHHHHHHHHHHhc-hhhh
Q 006201 566 LSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATG-LCHH 644 (657)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~~~~l~~l~~~~g-~~f~ 644 (657)
.|. .-|..++..+..++-.+.... ....+-.+++.+...+-+.++.+....+.++..+..++| ..|.
T Consensus 1048 ---rD~----vhRqta~~~I~Hl~Lg~~g~g-----~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~~ 1115 (1172)
T KOG0213|consen 1048 ---RDL----VHRQTAMNVIKHLALGVPGTG-----CEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQAML 1115 (1172)
T ss_pred ---ccH----HHHHHHHHHHHHHhcCCCCcC-----cHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHHHH
Confidence 222 236678888888776543321 445667778887777777789999999999999999999 5899
Q ss_pred hccccccccCC
Q 006201 645 RRCCWGLMQGS 655 (657)
Q Consensus 645 ~y~~~~~~~~~ 655 (657)
+||..+||-.+
T Consensus 1116 ~Y~~QGLFHPa 1126 (1172)
T KOG0213|consen 1116 KYCLQGLFHPA 1126 (1172)
T ss_pred HHHHHhccCcH
Confidence 99999998643
No 18
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.90 E-value=3.7e-20 Score=189.26 Aligned_cols=599 Identities=15% Similarity=0.115 Sum_probs=337.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhccc
Q 006201 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLS 84 (657)
Q Consensus 5 l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~ 84 (657)
++..+....|+|+..++.||+.|++.+++ ++|...|..+..+...+..+|+.|++.|||+|.++|++. .-..
T Consensus 6 vv~~~~~aqs~~p~s~k~AE~~Lrqwe~q--~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~------~~~~ 77 (947)
T COG5657 6 VVKQLDLAQSPDPPSVKCAEERLRQWEKQ--HGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREE------NGNS 77 (947)
T ss_pred HHHHHHhhcCCCCchHhhHHHHHHhhhcc--ccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhh------cccC
Confidence 45567888999999999999999999998 899999999999877899999999999999999999843 2245
Q ss_pred CChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccc
Q 006201 85 LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSS 164 (657)
Q Consensus 85 l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~ 164 (657)
+.++.+..||..++.++.+.+..+.-+.|.+++.||+.++| ..||+++|.+...+++.|...-++.+.++.++++.+.+
T Consensus 78 i~p~e~v~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfP-deWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r~ 156 (947)
T COG5657 78 ILPDENVLIRDELFSLIISSSNQLQIQNALAVSRIARLDFP-DEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLRR 156 (947)
T ss_pred CCCccchHHHHHHHHHHHcccchHHHHHHHHHHHHHhccCc-ccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhh
Confidence 66666669999999999988888888999999999999999 79999999999999999888888999999999988742
Q ss_pred cccchhhH----hHHHHHHHhccCCCCCCHHHHH-----------HHHHHHHHHHhhchhhcCCh-----hhHHHHHHHH
Q 006201 165 DAVEQDHV----NKILTAVVQGMNASESNNDVRL-----------AATRALYNALGFAQANFSND-----MERDYIMRVV 224 (657)
Q Consensus 165 ~~l~~~~~----~~l~~~l~~~l~~~~~~~~vr~-----------~al~~l~~~~~~~~~~~~~~-----~~~~~il~~l 224 (657)
.....+.. ..+.+.+.+.+...-+.+..+. .+++.+..+..+ .+.+. ...+..+..+
T Consensus 157 l~Rsd~lf~ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~---~~qdi~eFfEd~l~~~m~~F 233 (947)
T COG5657 157 LFRSDALFLEIAPVLLSILCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDL---GFQDIPEFFEDNLDKFMEHF 233 (947)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHh---cCCChhHHHHHHHHHHHHHH
Confidence 21111222 2222222222221111122111 233333333222 22111 1113444444
Q ss_pred HhhccCCc-------------HHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcC-Ch----HHHHHHHHHHHH
Q 006201 225 CEATLSPE-------------VKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVRED-EE----PVALQAIEFWSS 286 (657)
Q Consensus 225 ~~~~~~~~-------------~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~-~~----~v~~~a~~~~~~ 286 (657)
..++.-.. ..++...++.+.-+...+|+.+.+++-+.++.+|..+++. ++ .+...++.++..
T Consensus 234 ~klls~~~~~lq~~~le~~~~~~l~~~i~e~f~ly~t~yp~~it~li~dfv~~vw~~lttit~~~~~d~Lv~k~l~~l~~ 313 (947)
T COG5657 234 CKLLSYSNPVLQKDCLEDCVYFKLKGSICEIFNLYTTKYPEVITYLIYDFVEIVWNLLTTITRPYIRDYLVSKSLTVLIN 313 (947)
T ss_pred HHHHhhcchhhhhhhcccceeeeecccHHHHHHHHhhccHHHhhHHHHHHHHHHHHHHHhhcCccccchhhhhHHHHHHH
Confidence 44433111 1234456677777777888888888888999888877652 22 233334444333
Q ss_pred HhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHH-hhhhcCccc---c-----------CCCcchHhhhHHH
Q 006201 287 VCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLET-LLKQEEDQD---Q-----------DEGAWNIAMAGGT 351 (657)
Q Consensus 287 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~-l~~~~~d~~---~-----------d~~~~~~r~~a~~ 351 (657)
....- ..+..+ -..+.+.....+++..++.. +.-.++|.| + .+-..++|..+.+
T Consensus 314 v~k~~---irk~~e--------~l~n~~~~~~~~lvd~l~l~n~~lreed~E~~~ddp~eyire~s~~dye~~vr~~~~~ 382 (947)
T COG5657 314 VIKYP---IRKTAE--------VLSNVSENLINNLVDLLILPNLILREEDLEEWEDDPLEYIREQSKTDYEVNVRPCIEN 382 (947)
T ss_pred hhccc---cHHHHH--------HHHHHHHHHHHHHHHHHhhhccccCcccccccccCHHHHHHhhccccchhhhhHHHHH
Confidence 33210 000000 00011122334444443322 222222211 0 1112456777888
Q ss_pred HHHHHHhhcCCCchhchHHHHHhhhcCcc---hhhHHHHHHHHHHhhcCCCCCcchHHHH----HHHHHHHHHhcCCCcH
Q 006201 352 CLGLVARTVGDDIVPLVMPFVEENITKQE---WRQREAATYAFGSILEGPSPEKLVPLVN----IALNFMLTALMQDPNN 424 (657)
Q Consensus 352 ~L~~l~~~~~~~~~~~l~~~l~~~l~~~~---~~~r~aal~~l~~i~~~~~~~~~~~~~~----~i~~~l~~~l~~d~~~ 424 (657)
.+..+-..+++-+.+.+...+.+..+.++ -..+..+++++-.+.... ...+-+++. .+.|.++.-. .-.+.
T Consensus 383 ~l~~~f~~~~~i~~~~~~~~ie~~~t~P~~~d~~~~~~a~~a~~g~g~~a-v~~~~~~v~~~~~~~~pd~~s~~-~~~~~ 460 (947)
T COG5657 383 ELKDLFDVFGRIAVGHELTVIESEATTPNILDEARQLFAAYASFGLGVEA-VNRMVDFVKFLGSIIYPDLLSPN-EIIHL 460 (947)
T ss_pred HHHHHHHHHhhHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHhcCccccCcc-cCcee
Confidence 88888778886667788888877766662 122333333333322110 011111111 1222222111 22345
Q ss_pred HHHHHHH-HHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhccCCCCCCCCCchhHH
Q 006201 425 HVKDTTA-WTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQ 503 (657)
Q Consensus 425 ~vr~~a~-~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~ 503 (657)
+++.... ..+..-.....+..........+.+...+.....+.. --.++.+....+...+- .+....+-++
T Consensus 461 ri~~~~i~~i~~~r~~l~~~~~~~~~fl~~~~F~~yt~~~id~~~-lLT~~~a~~t~~~~~n~-------~~~~~~~~le 532 (947)
T COG5657 461 RILRSRIAYILTFRNQLDSSELSESKFLASQFFVNYTTACIDAVV-LLTTREAYSTIFDDWNF-------SVCSKIGLLE 532 (947)
T ss_pred EEehhccchheechhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHhccc-------ccccccccHH
Confidence 5543332 2221111110000000000000111111111111100 12334344333333221 1223445677
Q ss_pred HHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHH
Q 006201 504 EIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCG 583 (657)
Q Consensus 504 ~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (657)
+++-.+++.+...+. ..-++.+++++++++...++...|....+++.+.+.|.....+|. .+ .+-+...+
T Consensus 533 nl~~lvl~~~as~~~--~~e~~~ll~~i~rii~~~~~~i~pl~~~il~~L~~lv~~~~knps----~p----~~~h~~fe 602 (947)
T COG5657 533 NLILLVLSLMASPSS--LEEREFLLQLISRIIIIDPELIAPLGSEILQLLDNLVEINAKNPS----NP----QFAHYTFE 602 (947)
T ss_pred HHHHHHHHhcCCcch--hHHHHHHHHHHHHHHHhCHHhhhhhHHHHHHHHHHHHHHHccCCc----cH----HHHHHHHH
Confidence 777777788777663 455678999999999999999999888889888888877544331 11 23345566
Q ss_pred HHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHcccCCcch-hhHHHHHHH-------HHHHhchhhhhccccccccCC
Q 006201 584 CLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAH-EEAMLAIGA-------LAYATGLCHHRRCCWGLMQGS 655 (657)
Q Consensus 584 ~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~-~~~~~~l~~-------l~~~~g~~f~~y~~~~~~~~~ 655 (657)
.++.++..... ..+..++.+...+......+- +++.+.++- +...++.++.|.....+.|-+
T Consensus 603 ~I~al~~~~~~----------~~~~~ip~l~~~l~p~~~~l~~ed~~El~~~~lq~~s~l~e~f~~~~lp~v~~~l~q~~ 672 (947)
T COG5657 603 DIGALVFLKSG----------MCEITIPTLVLALVPEFPVLLSEDATELWSYVLQLLSILPEHFSGDVLPSVVKILRQPS 672 (947)
T ss_pred HHHHHHHhhhc----------ccccchHHHHHhhCccchhhhhhhHHHHHHHHHHHHhhcchhhcCCcCchHHHHHhccc
Confidence 66666665333 334445555555554422222 555555444 444556666777777777765
Q ss_pred C
Q 006201 656 G 656 (657)
Q Consensus 656 ~ 656 (657)
|
T Consensus 673 ~ 673 (947)
T COG5657 673 L 673 (947)
T ss_pred C
Confidence 5
No 19
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.90 E-value=1.2e-18 Score=170.33 Aligned_cols=525 Identities=17% Similarity=0.252 Sum_probs=348.9
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhccc
Q 006201 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLS 84 (657)
Q Consensus 5 l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~ 84 (657)
+-++.++.+.+|+..+++|++-|.+|++. |+.|...-.+|.+ +..++.+..|..+|.+.+.. .|.-
T Consensus 16 lDkVVttfyqg~g~~q~qAq~iLtkFq~~--PdaWtkad~IL~~-S~~pqskyiALs~LdklItt-----------kWkl 81 (1053)
T COG5101 16 LDKVVTTFYQGDGRKQEQAQRILTKFQEL--PDAWTKADYILNN-SKLPQSKYIALSLLDKLITT-----------KWKL 81 (1053)
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHhC--chHHHHHHHHHhc-ccCcchhhhHHHHHHHHHHh-----------hhhh
Confidence 34677788889999999999999999998 9999999999998 67889999999999999985 5677
Q ss_pred CChHHHHHHHHHHHHhcCC--CChHHH-------HHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHH
Q 006201 85 LDSSVKAQIKSFILKTLSS--PAHDAR-------STASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETL 155 (657)
Q Consensus 85 l~~~~~~~i~~~ll~~l~~--~~~~vr-------~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l 155 (657)
++++.|..||.-+++.+.+ .++.+| +.+-..+..|++.++| ..||+++|.+++..+ .+..+.+..+.+|
T Consensus 82 lp~~~r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP-~nWP~FIpeli~~S~-~s~~vCeNnmivL 159 (1053)
T COG5101 82 LPEGMRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWP-RNWPTFIPELINVSQ-ISMEVCENNMIVL 159 (1053)
T ss_pred CCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcc-cccchhhHHHHhhcc-chHHHHhccHHHH
Confidence 8999999999999887643 334444 4566678889999999 599999999999866 4666777777777
Q ss_pred HHHhhhc---cccccc-----------hhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHH
Q 006201 156 GYICEEV---SSDAVE-----------QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIM 221 (657)
Q Consensus 156 ~~i~~~~---~~~~l~-----------~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il 221 (657)
..+.+++ +.+.++ .....+++..+.+.+.. ..++.+-.+.++.+..++.|++-.+. +-..++
T Consensus 160 klLsEEvFdfSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~-~~~~SLi~ATLesllrfl~wiPl~yI---feTnIi 235 (1053)
T COG5101 160 KLLSEEVFDFSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEY-SRDESLIEATLESLLRFLEWIPLDYI---FETNII 235 (1053)
T ss_pred HHhHHHHHhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHhhCchhHH---HHHHHH
Confidence 7776653 222221 12356777777777765 45778888899999888888763322 113444
Q ss_pred HHHHhhccCCcHHHHHHHHHHHHHHHHHHH---------HhhH---------------------------------HhHH
Q 006201 222 RVVCEATLSPEVKIRQAAFECLVAISSTYY---------EKLA---------------------------------PYIQ 259 (657)
Q Consensus 222 ~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~---------~~~~---------------------------------~~~~ 259 (657)
..+...+. ..++.|...++||.+++.... +.+. .++.
T Consensus 236 eLv~~~f~-s~pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq 314 (1053)
T COG5101 236 ELVLEHFN-SMPDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQ 314 (1053)
T ss_pred HHHHHHhc-cCCchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHH
Confidence 44443332 344556666666666654210 0000 0011
Q ss_pred HHHHHHH-------HHHh--------------------cCChHHHHHHHHHHHHHhHHHHHhhhhc-----CC---CCCC
Q 006201 260 DIFNITA-------KAVR--------------------EDEEPVALQAIEFWSSVCDEEIDILEEY-----GG---DFSG 304 (657)
Q Consensus 260 ~l~~~~~-------~~~~--------------------~~~~~v~~~a~~~~~~l~~~~~~~~~~~-----~~---~~~~ 304 (657)
.+..++. ..++ =.+.++-..+++.|..+...-..-..+. +| ...|
T Consensus 315 ~LA~fL~s~~~~~~~lLE~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~ 394 (1053)
T COG5101 315 KLAQFLSSLYEVYISLLEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVG 394 (1053)
T ss_pred HHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhcccc
Confidence 1111110 0010 0234566788889988775432211111 11 0111
Q ss_pred C----------CCCch-hhHHHhhhhhHHHHHHHHhhhhcCc-----ccc--------CCCcchHhhhHHHHHHHHHhhc
Q 006201 305 D----------SDIPC-FYFIKHALPVLVPLLLETLLKQEED-----QDQ--------DEGAWNIAMAGGTCLGLVARTV 360 (657)
Q Consensus 305 ~----------~~~~~-~~~~~~~l~~l~~~l~~~l~~~~~d-----~~~--------d~~~~~~r~~a~~~L~~l~~~~ 360 (657)
. ++.|. ++....+++++.-.++..|..++|- ++. |-|..+.-+....+|..+....
T Consensus 395 s~~istnpn~~~~~pLrkhiY~~ilsqLrlvlienMvrPEEVliVendegEivRefvketDtI~lYksmRevLvyLthL~ 474 (1053)
T COG5101 395 SQAISTNPNQDSTKPLRKHIYIGILSQLRLVLIENMVRPEEVLIVENDEGEIVREFVKETDTIELYKSMREVLVYLTHLI 474 (1053)
T ss_pred chhccCCcchhcccchHHHHHHHHHHHHHHHHHHcCCCcceEEEEECCCcHHHHHHhccccHhHHHHHHhhHHHHHhhhh
Confidence 1 11121 2233455666667777778766541 110 1233445556667777776655
Q ss_pred CCCchhchHHHHHhhhcCc--chhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHh----cCCCcHHHHHHHHHHH
Q 006201 361 GDDIVPLVMPFVEENITKQ--EWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTAL----MQDPNNHVKDTTAWTL 434 (657)
Q Consensus 361 ~~~~~~~l~~~l~~~l~~~--~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l----~~d~~~~vr~~a~~~l 434 (657)
..+.-..++.-+...+.+. +|..-..-++|+|+|+...+...-+.++-+++..++... .+|....|....++++
T Consensus 475 v~Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvv 554 (1053)
T COG5101 475 VDDTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVV 554 (1053)
T ss_pred hhhHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeee
Confidence 4444445555555566555 478888899999999987654444567777777666543 1677778888899999
Q ss_pred HHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCC--CCCCCCCchhHHHHHHHHHH
Q 006201 435 GRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDA--ISPSSPLTPFFQEIVQALLT 511 (657)
Q Consensus 435 ~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~--~~~~~~l~~~~~~i~~~L~~ 511 (657)
|++..++. .+..++..++..|++.++. +..|+..||..+-.+++.|.-+ .....+-+||+..|+..|-+
T Consensus 555 GQYpRFLk--------ahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~k 626 (1053)
T COG5101 555 GQYPRFLK--------AHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPK 626 (1053)
T ss_pred ccchHHHH--------HHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhh
Confidence 99999986 5688999999999999985 7899999999999998876432 11244567899999888877
Q ss_pred hhccccchhhhHHHHHHHHHHHHHHhcccc--cHHHHHHHHHHHHHHHHHHH
Q 006201 512 VTHREDAGESRLRTAAYETLNEVVRCSTDE--TAPMVMQLVPLIMMELHQTL 561 (657)
Q Consensus 512 ~l~~~~~~~~~~~~~~~~al~~l~~~~~~~--~~~~~~~l~~~l~~~l~~~~ 561 (657)
...+-+ ....+ ..++|++-+++..+.. ....+..+|......|.+..
T Consensus 627 tT~dL~--pqQ~h-tfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~niv 675 (1053)
T COG5101 627 TTGDLE--PQQKH-TFYEACGMVISEVPKTRDYKRLVLDLMDLPNSAWLNIV 675 (1053)
T ss_pred hcccCC--hHHHh-HHHHHHhHHHhccchhhHHHHHHHHHHHhhHHHHHHHH
Confidence 776654 34444 5899999999998853 33445556666666666543
No 20
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2.1e-17 Score=168.32 Aligned_cols=600 Identities=14% Similarity=0.181 Sum_probs=375.1
Q ss_pred HHHHHHHHhcCC-ChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhc
Q 006201 4 EVTQILLNAQSV-DGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRW 82 (657)
Q Consensus 4 ~l~~~l~~~~s~-d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~ 82 (657)
++..++..++++ +++....++++|+..+.. +..+..-.+++.. ....++|.++|+.|...+++ +|
T Consensus 8 ~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S--~Q~w~~s~~llQ~-~k~~evqyFGAltL~~ki~~-----------~~ 73 (982)
T KOG2022|consen 8 TVEELVTTLYSHRNHENDAITQKWLQDAQCS--QQGWHFSWQLLQP-DKSSEVQYFGALTLHDKINT-----------RW 73 (982)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHhh--HHHHHHHHHHcCC-CchhHHHHHhHHHHHHHHHh-----------hh
Confidence 677888889886 778999999999999887 7777666677765 45778899999999998885 56
Q ss_pred ccCChHHHHHHHHHHHHhcCC--C-ChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCCh-----hHH-HHHHH
Q 006201 83 LSLDSSVKAQIKSFILKTLSS--P-AHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPP-----HTK-QATLE 153 (657)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~--~-~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~-----~~~-~~~l~ 153 (657)
..++++....++..++..+.- + ...|-+..+.+++.++-+..| +.||+-+..++..++.... +++ ...+.
T Consensus 74 e~~~~~~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~-d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le 152 (982)
T KOG2022|consen 74 EECPANEAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVP-DLWPTAIQDVIPTLQGQASPLVLADINCEILLE 152 (982)
T ss_pred ccCChhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHcc-ccCCchHHHHHHHHhcccCccccchhhHHHHHH
Confidence 678898999999888887653 2 357778888888888888888 6999999999999876422 221 22334
Q ss_pred HHHHHhhhccccccc-----------hhhHhHHHHHHHhccCCCC-CCH-----HHHHHHHHHHHHHHhhchhhcCC---
Q 006201 154 TLGYICEEVSSDAVE-----------QDHVNKILTAVVQGMNASE-SNN-----DVRLAATRALYNALGFAQANFSN--- 213 (657)
Q Consensus 154 ~l~~i~~~~~~~~l~-----------~~~~~~l~~~l~~~l~~~~-~~~-----~vr~~al~~l~~~~~~~~~~~~~--- 213 (657)
.|+.+..++....+. ......+++.+...++..+ ..+ -.+.++++|+..++.++.-...+
T Consensus 153 ~Ls~~p~e~q~~~l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i~~~~~~c~~ 232 (982)
T KOG2022|consen 153 VLSFMPAEFQHVTLPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYISLTGMDCDQ 232 (982)
T ss_pred HhccCcHhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHhccccccHHH
Confidence 443222222111110 0112223333333333111 122 35788999999988753210000
Q ss_pred -----------------------------hhhHHH----------------------HHHHHHh----------hccCCc
Q 006201 214 -----------------------------DMERDY----------------------IMRVVCE----------ATLSPE 232 (657)
Q Consensus 214 -----------------------------~~~~~~----------------------il~~l~~----------~~~~~~ 232 (657)
....+. +++.+.. ...+++
T Consensus 233 i~~~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~~~~e~~d 312 (982)
T KOG2022|consen 233 ITQVLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKIQEEENAD 312 (982)
T ss_pred HHHHHHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 000000 0111000 011111
Q ss_pred --HHHHHHHHHHHHHHHHHHHHhhHH---------hHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHHhHHHHHhhh
Q 006201 233 --VKIRQAAFECLVAISSTYYEKLAP---------YIQDIFNITAKAVRE-----DEEPVALQAIEFWSSVCDEEIDILE 296 (657)
Q Consensus 233 --~~~~~~~~~~l~~l~~~~~~~~~~---------~~~~l~~~~~~~~~~-----~~~~v~~~a~~~~~~l~~~~~~~~~ 296 (657)
.+.-...+......+++....+.. ++..++..+..+..- .++.+...++.||.++.++-.....
T Consensus 313 ~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~~ 392 (982)
T KOG2022|consen 313 ASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTIN 392 (982)
T ss_pred chhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 111112222222222221111111 111222222222211 1345567789999999886533221
Q ss_pred hcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCcc-----ccCCCcc-hHhhhHHHHHHHHHhhcCCCchhchHH
Q 006201 297 EYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQ-----DQDEGAW-NIAMAGGTCLGLVARTVGDDIVPLVMP 370 (657)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~-----~~d~~~~-~~r~~a~~~L~~l~~~~~~~~~~~l~~ 370 (657)
+ +. ......+.+++..+++..++.++..+.+.. .++-+++ ..|+.-.+++...-..+|+..+..+..
T Consensus 393 e------~~-~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~~YR~diSD~~~~~Y~ilgd~ll~~L~~ 465 (982)
T KOG2022|consen 393 E------TQ-QIKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSREQFESYRKDISDLLMSSYSILGDGLLDFLID 465 (982)
T ss_pred c------cC-CcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 1 00 011334556777788888888876433210 0111122 577878888888888889999999999
Q ss_pred HHHhhhcCcc-----hhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHHhhhccC
Q 006201 371 FVEENITKQE-----WRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTA-LMQDPNNHVKDTTAWTLGRMFEFLHGS 444 (657)
Q Consensus 371 ~l~~~l~~~~-----~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~-l~~d~~~~vr~~a~~~l~~l~~~~~~~ 444 (657)
.+.+.+.+.+ |..-+++++.+.++++..+ ....+.++.++...-.. + .-+++..-.++...+|.++.++.
T Consensus 466 ~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~-~t~~~~i~rl~~~~asik~-S~~n~ql~~Tss~~igs~s~~l~-- 541 (982)
T KOG2022|consen 466 TLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLG-ETESTWIPRLFETSASIKL-SAPNPQLLSTSSDLIGSLSNWLG-- 541 (982)
T ss_pred HHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcC-cchhHHHHHHHHhcccccc-ccCChhHHHHHHHHHHHHHHHHh--
Confidence 9998887765 9999999999999999864 44555555555443321 2 34588999999999999999997
Q ss_pred cCCCccCCcccHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHH
Q 006201 445 TLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLR 524 (657)
Q Consensus 445 ~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~ 524 (657)
..+.+++..+|.|+++|+ +++.-..+...+.++|+.| +..+.||.+.++..+-..+..... ....|
T Consensus 542 ------e~P~~ln~sl~~L~~~Lh-~sk~s~q~i~tl~tlC~~C------~~~L~py~d~~~a~~~e~l~~~~~-~~S~~ 607 (982)
T KOG2022|consen 542 ------EHPMYLNPSLPLLFQGLH-NSKESEQAISTLKTLCETC------PESLDPYADQFSAVCYEVLNKSNA-KDSDR 607 (982)
T ss_pred ------cCCcccCchHHHHHHHhc-CchHHHHHHHHHHHHHHhh------hhhCchHHHHHHHHHHHHhccccc-CchHH
Confidence 467899999999999998 4556667778899999987 467999999999999988876543 35677
Q ss_pred HHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHH-HHHHHHHHHHHHHhCCCcc---h-
Q 006201 525 TAAYETLNEVVRCSTD-ETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQ-GLLCGCLQVIIQKLGSSEQ---T- 598 (657)
Q Consensus 525 ~~~~~al~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~---~- 598 (657)
..++.++|.+.+.... ...+|+..+++.++..++.......-..+.+ +| .-.+.++++++..+-.+.+ +
T Consensus 608 ~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~-----l~~~~~l~~iS~LftSL~~~~~~~d~d 682 (982)
T KOG2022|consen 608 LKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENH-----LRIAFQLNTISALFTSLINKKDIIDTD 682 (982)
T ss_pred HHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHH-----HHHHHHHHHHHHHHhccCCCCcccccc
Confidence 8999999999999874 4567999999999998887754222111111 22 1346888888888755432 1
Q ss_pred ----hh------HhhHHHHHHHHHHHHHHcc--cCCcchhhHHHHHHHHHHHhchhh-hhccc
Q 006201 599 ----KY------VFMQYADQMMGLFLRVFAI--RSATAHEEAMLAIGALAYATGLCH-HRRCC 648 (657)
Q Consensus 599 ----~~------~~~~~~~~i~~~l~~~l~~--~~~~v~~~~~~~l~~l~~~~g~~f-~~y~~ 648 (657)
+. .......++|+.+-+.++. .+.++-+.+...++.=.+..+++| .||++
T Consensus 683 ~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~ 745 (982)
T KOG2022|consen 683 QPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLP 745 (982)
T ss_pred chhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHH
Confidence 10 1334455566665555543 244455555544444455566777 56554
No 21
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.84 E-value=1.3e-17 Score=162.85 Aligned_cols=609 Identities=15% Similarity=0.156 Sum_probs=379.5
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHh-cCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHH----
Q 006201 2 SAEVTQILLNAQSVDGTVRKQAEESLKQYQE-QNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKF---- 76 (657)
Q Consensus 2 ~~~l~~~l~~~~s~d~~~r~~A~~~L~~~~~-~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~---- 76 (657)
|..+.-+|-...++++..|..+-..|..-.- ..+......++.++.+.+.+++.|++...++-+.+..-.+-..+
T Consensus 167 Er~v~rllLkvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~~pyvhk 246 (975)
T COG5181 167 ERDVYRLLLKVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLKVPYVHK 246 (975)
T ss_pred hHhHHHHHhhcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhcccccccceee
Confidence 3456677778888889999999999874333 23455677788888887789999999888887766553321100
Q ss_pred Hh-hhhcccCChHHHH-----HHHHHHHH--hc-----------CCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHH
Q 006201 77 EL-VQRWLSLDSSVKA-----QIKSFILK--TL-----------SSPAHDARSTASQVVAKVAGIELPHKQWPELIGALL 137 (657)
Q Consensus 77 ~~-~~~~~~l~~~~~~-----~i~~~ll~--~l-----------~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~ 137 (657)
.. ...-..++++.+. +|..+|.. +| .+.++.||+..+.+.+.++... ..++++|+|.
T Consensus 247 ILvVv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~al----gv~~llpfl~ 322 (975)
T COG5181 247 ILVVVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADAL----GVEELLPFLE 322 (975)
T ss_pred EEEEeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhh----CcHHHHHHHH
Confidence 00 0000112333221 22222222 12 2346899999999999999886 5689999999
Q ss_pred HhhcCC-ChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhh
Q 006201 138 SNIHQL-PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDME 216 (657)
Q Consensus 138 ~~l~~~-~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~ 216 (657)
..+.+. +++.|..++++..+|+.......+ +|+..++..+..++. |.+..||..+..+++.+.+.....-. + .
T Consensus 323 a~c~SrkSw~aRhTgiri~qqI~~llG~s~l--~hl~~l~~ci~~~l~--D~~~~vRi~tA~alS~lae~~~Pygi-e-~ 396 (975)
T COG5181 323 ALCGSRKSWEARHTGIRIAQQICELLGRSRL--SHLGPLLKCISKLLK--DRSRFVRIDTANALSYLAELVGPYGI-E-Q 396 (975)
T ss_pred HHhcCccchhhhchhhHHHHHHHHHhCccHH--hhhhhHHHHHHHHhh--ccceeeeehhHhHHHHHHHhcCCcch-H-H
Confidence 999886 789999999999999998744444 788999999999999 78889998888888877664321110 0 1
Q ss_pred HHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHH-HHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHH-------------
Q 006201 217 RDYIMRVVCEATLSPEVKIRQAAFECLVAISST-YYEKLAPYIQDIFNITAKAVREDEEPVALQAIE------------- 282 (657)
Q Consensus 217 ~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~------------- 282 (657)
.+.++.-+..-.+..--....+.+++++.++-. .|++...+..+.+.+++..+++.+++.+...+-
T Consensus 397 fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp 476 (975)
T COG5181 397 FDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTP 476 (975)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCH
Confidence 123333332222222222222333333332211 233333333344444444443333322211111
Q ss_pred --------------HHHH------------------HhHHH--H----HhhhhcCCCCCC--------------------
Q 006201 283 --------------FWSS------------------VCDEE--I----DILEEYGGDFSG-------------------- 304 (657)
Q Consensus 283 --------------~~~~------------------l~~~~--~----~~~~~~~~~~~~-------------------- 304 (657)
||.. ++... + .+.+.+.++.|.
T Consensus 477 ~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~ 556 (975)
T COG5181 477 WKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLG 556 (975)
T ss_pred HHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhccccc
Confidence 1111 00000 0 001111111000
Q ss_pred --------------------CCC----Cchh--------hHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHH
Q 006201 305 --------------------DSD----IPCF--------YFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTC 352 (657)
Q Consensus 305 --------------------~~~----~~~~--------~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~ 352 (657)
+.. ++++ ...+++++.|+..+++.+.... -.+|..|+++
T Consensus 557 ~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~---------p~vR~~aadl 627 (975)
T COG5181 557 FDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKP---------PDVRIRAADL 627 (975)
T ss_pred ccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCC---------ccHHHHHHHH
Confidence 000 0000 0113333333443333333221 2567788888
Q ss_pred HHHHHhhc---C-CCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHH
Q 006201 353 LGLVARTV---G-DDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKD 428 (657)
Q Consensus 353 L~~l~~~~---~-~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~ 428 (657)
.+.++..+ | ...+..+-.++.+++....+.+--..+.|+.+|....+...+.|-+..++|.+...| .+.|..|..
T Consensus 628 ~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPIL-rnkh~Kv~~ 706 (975)
T COG5181 628 MGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPIL-RNKHQKVVA 706 (975)
T ss_pred HHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhh-hhhhHHHhh
Confidence 88887655 3 356677777888888877777877788888888776555667778899999999999 999999999
Q ss_pred HHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCC---------------
Q 006201 429 TTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAI--------------- 492 (657)
Q Consensus 429 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~--------------- 492 (657)
.....+|.++..-+ .+....-+-.+.-.|+..|.. +..+|.+|..+++.+.+..++++
T Consensus 707 nti~lvg~I~~~~p------eyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq 780 (975)
T COG5181 707 NTIALVGTICMNSP------EYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNNLKVQERQ 780 (975)
T ss_pred hHHHHHHHHHhcCc------ccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHHHHH
Confidence 99999999999765 345555666677777777776 78999999999998887766531
Q ss_pred ---CCCCC---CchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhcC
Q 006201 493 ---SPSSP---LTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKL 566 (657)
Q Consensus 493 ---~~~~~---l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 566 (657)
+..-. +..|. ..+..+-.+++++.+.+.+++.-++.++..+.+..|+.-..|+-.+.|.+-.++..
T Consensus 781 ~RvctsvaI~iVae~c-gpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltD------- 852 (975)
T COG5181 781 QRVCTSVAISIVAEYC-GPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTD------- 852 (975)
T ss_pred hhhhhhhhhhhhHhhc-CchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcc-------
Confidence 00000 01111 11122223344444445788888999999999999988788888888877665542
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHcccCCcchhhHHHHHHHHHHHhc-hhhhh
Q 006201 567 SSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATG-LCHHR 645 (657)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~~~~l~~l~~~~g-~~f~~ 645 (657)
.|. .-|..+...|..++-.+.... -...+-.+++.+...+-++++.+.....+++..++.++| ..|-.
T Consensus 853 --rD~----vhRqta~nvI~Hl~Lnc~gtg-----~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~~m~ 921 (975)
T COG5181 853 --RDP----VHRQTAMNVIRHLVLNCPGTG-----DEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMK 921 (975)
T ss_pred --cch----HHHHHHHHHHHHHhcCCCCcc-----cHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHHHHH
Confidence 232 246678888888877654431 224555677777777777789999999999999999999 57999
Q ss_pred ccccccccCC
Q 006201 646 RCCWGLMQGS 655 (657)
Q Consensus 646 y~~~~~~~~~ 655 (657)
|+..+||-.|
T Consensus 922 Yv~qGLFHPs 931 (975)
T COG5181 922 YVQQGLFHPS 931 (975)
T ss_pred HHHHhccCch
Confidence 9999998765
No 22
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=3.2e-15 Score=146.48 Aligned_cols=474 Identities=15% Similarity=0.197 Sum_probs=302.5
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHHHHHHh
Q 006201 21 KQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKT 100 (657)
Q Consensus 21 ~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~ 100 (657)
.+|..+|.+|+++ ...+..+-+++.. ..+.....+|++.+++++.+ .|..+++......|+.++..
T Consensus 2 ~~A~~~L~~FQ~S--~~aW~i~~eiL~~-~~~~~~~~FaaqTlr~Ki~~-----------~F~~Lp~~~~~slrdsl~th 67 (559)
T KOG2081|consen 2 EKANNWLGNFQKS--NDAWQICEEILSQ-KCDVEALLFAAQTLRNKIQY-----------DFSELPPLTHASLRDSLITH 67 (559)
T ss_pred chHhHHHHHhCCC--hHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHh-----------hHHhcCcchhHHHHHHHHHH
Confidence 4788999999998 7777778888876 37889999999999998874 45678887778888866654
Q ss_pred cC---CCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcccccc--c-------
Q 006201 101 LS---SPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAV--E------- 168 (657)
Q Consensus 101 l~---~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l--~------- 168 (657)
+. +..+.+|.+++.+++.++-+. | .|.+-++.+++.+.+..+. ....+.+|..+-++..+-.. +
T Consensus 68 l~~l~~~~~~i~tQL~vavA~Lal~~-~--~W~n~I~e~v~~~~~~~~~-~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~ 143 (559)
T KOG2081|consen 68 LKELHDHPDVIRTQLAVAVAALALHM-P--EWVNPIFELVRALSNKHPA-VPILLEILKVLPEETRDIRLTVGANRRHEF 143 (559)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHh-H--hhcchHHHHHHHhhcCCcc-HHHHHHHHHhCcHhhcchhhhhhhhhHHHH
Confidence 43 334599999999999999987 4 8999888888877776554 33444555544333311101 0
Q ss_pred ----hhhHhHHHHHHHhccCCCCCC-HHHHHHHHHHHHHHHhh--ch-hhcCChhhHHHHHHHHHhh-------------
Q 006201 169 ----QDHVNKILTAVVQGMNASESN-NDVRLAATRALYNALGF--AQ-ANFSNDMERDYIMRVVCEA------------- 227 (657)
Q Consensus 169 ----~~~~~~l~~~l~~~l~~~~~~-~~vr~~al~~l~~~~~~--~~-~~~~~~~~~~~il~~l~~~------------- 227 (657)
......++..+..++..++.+ .+.-..+++|++++... ++ +.+... ..++..++..
T Consensus 144 ~~~l~~~~~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~---~pLi~l~F~sl~~~~lhe~At~c 220 (559)
T KOG2081|consen 144 IDELAAQVSKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLAS---FPLITLAFRSLSDDELHEEATEC 220 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhh---hHHHHHHHHHcccchhhHHHHHH
Confidence 123345555566666644443 66778899999987652 11 110000 0111111111
Q ss_pred -----------------------------------ccCCcHHHHHHHHHHHHHHHHHHHHhhHH---hHHHHHHHHHHHH
Q 006201 228 -----------------------------------TLSPEVKIRQAAFECLVAISSTYYEKLAP---YIQDIFNITAKAV 269 (657)
Q Consensus 228 -----------------------------------~~~~~~~~~~~~~~~l~~l~~~~~~~~~~---~~~~l~~~~~~~~ 269 (657)
....+.+.+.+++..+..+.+.+...+.. ..-.+++.++-..
T Consensus 221 ic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~ 300 (559)
T KOG2081|consen 221 ICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVA 300 (559)
T ss_pred HHHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhc
Confidence 12344555556666666666555433321 1112344444445
Q ss_pred hcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcC-c--cccCCCcchHh
Q 006201 270 REDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEE-D--QDQDEGAWNIA 346 (657)
Q Consensus 270 ~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~-d--~~~d~~~~~~r 346 (657)
.+.+.++...++.||..+.+......+. ......+++..+++..+.....++.+ + .|++++....|
T Consensus 301 ~h~~~evie~SF~fW~~lse~l~~~~~~-----------~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR 369 (559)
T KOG2081|consen 301 GHNDTEVIEASFNFWYSLSEELTLTDDD-----------EALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFR 369 (559)
T ss_pred cCCchhhhhhhHHhhhhhHHHHhccccH-----------HHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHH
Confidence 5667788888999999988754211100 13345688888889988887776551 1 23333445788
Q ss_pred hhHHHHHHHHHhhcCC-CchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHH
Q 006201 347 MAGGTCLGLVARTVGD-DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNH 425 (657)
Q Consensus 347 ~~a~~~L~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~ 425 (657)
....+.+..++...|. ..+..+...+.+ .++.|+.-+|+++.+..++....++. .+.+++++..+.+. +....
T Consensus 370 ~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e-~~i~pevl~~i~nl---p~Q~~ 443 (559)
T KOG2081|consen 370 LKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEE-NTIMPEVLKLICNL---PEQAP 443 (559)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccc-cchHHHHHHHHhCC---ccchh
Confidence 8888999888888874 445544444444 45679999999999999998874333 34456665555432 23344
Q ss_pred HHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHH
Q 006201 426 VKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEI 505 (657)
Q Consensus 426 vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i 505 (657)
+|++++..+|.+++|.. ..+..+..++..+..++.... ....+..++..+|..+... ...+.|++..+
T Consensus 444 ~~~ts~ll~g~~~ew~~--------~~p~~le~v~~~~~~~~~~~~-~as~~a~~~~~i~~~c~~~---~~~l~~~~~~l 511 (559)
T KOG2081|consen 444 LRYTSILLLGEYSEWVE--------QHPELLEPVLRYIRQGLQLKR-LASAAALAFHRICSACRVQ---MTCLIPSLLEL 511 (559)
T ss_pred HHHHHHHHHHHHHHHHH--------hCcHHHHHHHHHHHHHhhhcc-hhHHHHHHHHHHHHHHHHH---hhhhhHHHHHH
Confidence 99999999999999986 567888888888888887533 6667777777777766431 23344555555
Q ss_pred HHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccc-cHHHHHHHH
Q 006201 506 VQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDE-TAPMVMQLV 550 (657)
Q Consensus 506 ~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~-~~~~~~~l~ 550 (657)
+..+.....+. ... ..++.++.++...+.. ..+.+.++.
T Consensus 512 ~~~l~~~~~~~-----e~a-~l~~~~s~i~~~lp~~k~~~~~~el~ 551 (559)
T KOG2081|consen 512 IRSLDSTQINE-----EAA-CLLQGISLIISNLPAHKAKIALEELC 551 (559)
T ss_pred HHHHHHHhccH-----HHH-HHHHHHHHHHhcCCHhhhhHHHHHHh
Confidence 44444443332 222 2778889999988853 444444433
No 23
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=1.1e-15 Score=151.83 Aligned_cols=478 Identities=16% Similarity=0.152 Sum_probs=335.4
Q ss_pred hHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHhhhcCC-CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccc
Q 006201 87 SSVKAQIKSFILKTLSSP-AHDARSTASQVVAKVAGIELPH-KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSS 164 (657)
Q Consensus 87 ~~~~~~i~~~ll~~l~~~-~~~vr~~aa~~l~~i~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~ 164 (657)
.+....+++..-+.|.+. +..+|+......+.++.+.... ..--.++..+++.++.+.+.+++....|+..+.....
T Consensus 50 ~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~- 128 (569)
T KOG1242|consen 50 DQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSK- 128 (569)
T ss_pred HHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhh-
Confidence 334455666666677764 5788988888888888886431 2345677888888899999999999999988766542
Q ss_pred cccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhc-hhhcCChhhHHHHHHHHHhhccCCcHHH-HHHHHHH
Q 006201 165 DAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFA-QANFSNDMERDYIMRVVCEATLSPEVKI-RQAAFEC 242 (657)
Q Consensus 165 ~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~-~~~~~~~~~~~~il~~l~~~~~~~~~~~-~~~~~~~ 242 (657)
......+.+.+.+.++ .....-|..+...+..++.-. -..+. ...++..+....++..... |..+.-+
T Consensus 129 ----~~~~~~~l~~l~~ll~--~~~~~~~~~aa~~~ag~v~g~~i~~~~----~~~~l~~l~~ai~dk~~~~~re~~~~a 198 (569)
T KOG1242|consen 129 ----GLSGEYVLELLLELLT--STKIAERAGAAYGLAGLVNGLGIESLK----EFGFLDNLSKAIIDKKSALNREAALLA 198 (569)
T ss_pred ----ccCHHHHHHHHHHHhc--cccHHHHhhhhHHHHHHHcCcHHhhhh----hhhHHHHHHHHhcccchhhcHHHHHHH
Confidence 1222344555555666 355555666666666654321 11111 1357777777776644443 3346666
Q ss_pred HHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHH
Q 006201 243 LVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLV 322 (657)
Q Consensus 243 l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 322 (657)
+.......+..+.||+..+++.++..+.|....+|..+.+....+...-+ ..-++. ++
T Consensus 199 ~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~------------------~~aVK~----ll 256 (569)
T KOG1242|consen 199 FEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLS------------------AYAVKL----LL 256 (569)
T ss_pred HHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcC------------------cchhhH----hh
Confidence 66666666778889999999999999999999999999877666655321 011333 34
Q ss_pred HHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCC---CchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCC
Q 006201 323 PLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD---DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPS 399 (657)
Q Consensus 323 ~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~ 399 (657)
|.++..+- +..|+...++.+.++.++.+.+. ..+|.++|.+.+.+.|....+|.++..++-.++....
T Consensus 257 psll~~l~---------~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svid 327 (569)
T KOG1242|consen 257 PSLLGSLL---------EAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVID 327 (569)
T ss_pred hhhHHHHH---------HHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhc
Confidence 44443332 12599999999999999988875 4689999999999999999999999999888776542
Q ss_pred CCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHH
Q 006201 400 PEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKAC 478 (657)
Q Consensus 400 ~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~ 478 (657)
. +.+..++|.++.++ .||.-.+.... ..+++ ..+. .....+-+..++|.+.+++.+ +...+..++
T Consensus 328 N----~dI~~~ip~Lld~l-~dp~~~~~e~~-~~L~~--ttFV------~~V~~psLalmvpiL~R~l~eRst~~kr~t~ 393 (569)
T KOG1242|consen 328 N----PDIQKIIPTLLDAL-ADPSCYTPECL-DSLGA--TTFV------AEVDAPSLALMVPILKRGLAERSTSIKRKTA 393 (569)
T ss_pred c----HHHHHHHHHHHHHh-cCcccchHHHH-Hhhcc--eeee------eeecchhHHHHHHHHHHHHhhccchhhhhHH
Confidence 1 23677789999999 98886665432 33322 2222 235568899999999999997 567778888
Q ss_pred HHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Q 006201 479 GALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELH 558 (657)
Q Consensus 479 ~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~ 558 (657)
..+.++|.-.++ +..+.||++.+++.+-..+.+.. +.+|..+..+|+.+.+..|.. ++....|.+.+.+.
T Consensus 394 ~IidNm~~LveD----p~~lapfl~~Llp~lk~~~~d~~---PEvR~vaarAL~~l~e~~g~~---~f~d~~p~l~e~~~ 463 (569)
T KOG1242|consen 394 IIIDNMCKLVED----PKDLAPFLPSLLPGLKENLDDAV---PEVRAVAARALGALLERLGEV---SFDDLIPELSETLT 463 (569)
T ss_pred HHHHHHHHhhcC----HHHHhhhHHHHhhHHHHHhcCCC---hhHHHHHHHHHHHHHHHHHhh---cccccccHHHHhhc
Confidence 999999887643 67899999999999999998873 689999999999999999974 22556666666554
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHccc--CCcchhhHHHHHHHHH
Q 006201 559 QTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIR--SATAHEEAMLAIGALA 636 (657)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~--~~~v~~~~~~~l~~l~ 636 (657)
... .+. -+......++.+...+|-+ +...+++.++...... ++.+++..+..+.-+-
T Consensus 464 ~~k-------~~~-----~~~g~aq~l~evl~~~~v~---------~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp 522 (569)
T KOG1242|consen 464 SEK-------SLV-----DRSGAAQDLSEVLAGLGVE---------KVEDILPEILANASSVLIDERIRDGVIWLFYLLP 522 (569)
T ss_pred cch-------hhh-----hhHHHhhhHHHHHhcccch---------HHHHHHHHHHHHHhhccchhhhccCeeehhhccc
Confidence 321 011 1234566777777777766 5555555555444443 4458888889999999
Q ss_pred HHhchhhhhcccccc
Q 006201 637 YATGLCHHRRCCWGL 651 (657)
Q Consensus 637 ~~~g~~f~~y~~~~~ 651 (657)
..+|.+|.+|+..++
T Consensus 523 ~~~~~~~~~yi~~i~ 537 (569)
T KOG1242|consen 523 YIFGFQFQPYIHEIL 537 (569)
T ss_pred hhhhHHhHHHHHHHH
Confidence 999999999987654
No 24
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=1.1e-14 Score=144.95 Aligned_cols=441 Identities=15% Similarity=0.163 Sum_probs=312.7
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 006201 38 FLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVA 117 (657)
Q Consensus 38 ~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~ 117 (657)
++..++..+. .+...+|...+..|..+.-. +.......+...+.+.+......-|..++..++
T Consensus 97 ~~~~~~~~~~--tps~~~q~~~~~~l~~~~~~---------------~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~a 159 (569)
T KOG1242|consen 97 IIEILLEELD--TPSKSVQRAVSTCLPPLVVL---------------SKGLSGEYVLELLLELLTSTKIAERAGAAYGLA 159 (569)
T ss_pred HHHHHHHhcC--CCcHHHHHHHHHHhhhHHHH---------------hhccCHHHHHHHHHHHhccccHHHHhhhhHHHH
Confidence 3333444444 34667777766666654321 222333456667788888777788888888888
Q ss_pred HHHhhhcCC-CCCchHHHHHHHhhcCCCh-hHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHH
Q 006201 118 KVAGIELPH-KQWPELIGALLSNIHQLPP-HTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLA 195 (657)
Q Consensus 118 ~i~~~~~~~-~~~~~l~~~l~~~l~~~~~-~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~ 195 (657)
.+.+...-. ..-..++..+...+.+.+. ..|+.++.++...+... ...+ .+++..++|.++.... |..+.||.+
T Consensus 160 g~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~L-g~~~-EPyiv~~lp~il~~~~--d~~~~Vr~A 235 (569)
T KOG1242|consen 160 GLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNL-GPPF-EPYIVPILPSILTNFG--DKINKVREA 235 (569)
T ss_pred HHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhc-CCCC-CchHHhhHHHHHHHhh--ccchhhhHH
Confidence 888764321 1224566777777777654 45567888887777777 3444 6888899999998888 789999999
Q ss_pred HHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChH
Q 006201 196 ATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEP 275 (657)
Q Consensus 196 al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 275 (657)
|..+...++..++.. .. ..+++.++..+....|..+.++++.++.++...++.+...++.++|.+...+.|..++
T Consensus 236 a~~a~kai~~~~~~~----aV-K~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~e 310 (569)
T KOG1242|consen 236 AVEAAKAIMRCLSAY----AV-KLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPE 310 (569)
T ss_pred HHHHHHHHHHhcCcc----hh-hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHH
Confidence 999888877644321 11 3344444443333488999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHH
Q 006201 276 VALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGL 355 (657)
Q Consensus 276 v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~ 355 (657)
+|.++.+.+..+++.. -.+-+..++|.+++.+.++.. ....|++.
T Consensus 311 vr~a~~~~l~~~~svi----------------------dN~dI~~~ip~Lld~l~dp~~-------------~~~e~~~~ 355 (569)
T KOG1242|consen 311 VRKAGIETLLKFGSVI----------------------DNPDIQKIIPTLLDALADPSC-------------YTPECLDS 355 (569)
T ss_pred HHHHHHHHHHHHHHhh----------------------ccHHHHHHHHHHHHHhcCccc-------------chHHHHHh
Confidence 9999999999988742 012255678888888874331 12355665
Q ss_pred HHhh-----cCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCC-CCCcchHHHHHHHHHHHHHhcCCCcHHHHHH
Q 006201 356 VART-----VGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGP-SPEKLVPLVNIALNFMLTALMQDPNNHVKDT 429 (657)
Q Consensus 356 l~~~-----~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~-~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~ 429 (657)
+... ....-+..++|++...+...+-..+..++..++.++.-. ++..+.+|++.++|.+-..+ .|+.|.||..
T Consensus 356 L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~-~d~~PEvR~v 434 (569)
T KOG1242|consen 356 LGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENL-DDAVPEVRAV 434 (569)
T ss_pred hcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHh-cCCChhHHHH
Confidence 5542 234557788999998887766555666666766665433 46788999999999999999 9999999999
Q ss_pred HHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHcccc--hHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHH
Q 006201 430 TAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDV--PNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQ 507 (657)
Q Consensus 430 a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~--~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~ 507 (657)
+.++|+.+.+... ...++...|.+...+.+. ..-+..++..+...+..++ .+++..+++
T Consensus 435 aarAL~~l~e~~g----------~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~---------v~~~~~~~~ 495 (569)
T KOG1242|consen 435 AARALGALLERLG----------EVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLG---------VEKVEDILP 495 (569)
T ss_pred HHHHHHHHHHHHH----------hhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhccc---------chHHHHHHH
Confidence 9999999999875 334488888888888753 3456677777887776543 356777777
Q ss_pred HHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Q 006201 508 ALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQT 560 (657)
Q Consensus 508 ~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~ 560 (657)
.+......... +..++...+..+.-+-...+..+++|+..+++.+.+.+...
T Consensus 496 ~~~a~~~~~~~-~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~ 547 (569)
T KOG1242|consen 496 EILANASSVLI-DERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADN 547 (569)
T ss_pred HHHHHHhhccc-hhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhc
Confidence 77766654432 34455555555555555556678899999999998887753
No 25
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=8.5e-15 Score=157.51 Aligned_cols=465 Identities=16% Similarity=0.222 Sum_probs=306.5
Q ss_pred CChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC----CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhh
Q 006201 85 LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH----KQWPELIGALLSNIHQLPPHTKQATLETLGYICE 160 (657)
Q Consensus 85 l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~----~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~ 160 (657)
.+......+...+...+.++++..|++.|.=+=.+.++.... -..+++.......+++.|+-.+..|.+.++-+-+
T Consensus 811 ~n~~~~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYe 890 (1702)
T KOG0915|consen 811 VNDTRETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYE 890 (1702)
T ss_pred cCCccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEe
Confidence 344455577788888899999999999999888888876421 2457888888888888888888888888875533
Q ss_pred hccccccchhhHhHHHHHHHhccCCCCC-----CHHHHH------------HHHHHHHHHHhhchhhcCChhhHHHHHHH
Q 006201 161 EVSSDAVEQDHVNKILTAVVQGMNASES-----NNDVRL------------AATRALYNALGFAQANFSNDMERDYIMRV 223 (657)
Q Consensus 161 ~~~~~~l~~~~~~~l~~~l~~~l~~~~~-----~~~vr~------------~al~~l~~~~~~~~~~~~~~~~~~~il~~ 223 (657)
-- ...+ -..++..++..+..+.. +.+... ..+.+...++...++ ...+...-.+|+.
T Consensus 891 lg-d~~~----k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASd-l~qPdLVYKFM~L 964 (1702)
T KOG0915|consen 891 LG-DSSL----KKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASD-LGQPDLVYKFMQL 964 (1702)
T ss_pred cC-Cchh----HHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhh-cCChHHHHHHHHH
Confidence 22 2222 23344444444331100 000000 011111111111111 1111111123332
Q ss_pred HHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCC
Q 006201 224 VCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFS 303 (657)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~ 303 (657)
-- -+-.|.-|+.+.--++.+++...+.+.||+++++|-+++.--|++..|+..-...|.++....
T Consensus 965 An---h~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~------------ 1029 (1702)
T KOG0915|consen 965 AN---HNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDS------------ 1029 (1702)
T ss_pred hh---hhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccCh------------
Confidence 21 124577888999999999999999999999999999998877888888888788899887532
Q ss_pred CCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhh
Q 006201 304 GDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQ 383 (657)
Q Consensus 304 ~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~ 383 (657)
+..+..++.+|+.-++ .++++..|++
T Consensus 1030 -------k~~vd~y~neIl~eLL-----------------------------------------------~~lt~kewRV 1055 (1702)
T KOG0915|consen 1030 -------KKVVDEYLNEILDELL-----------------------------------------------VNLTSKEWRV 1055 (1702)
T ss_pred -------HHHHHHHHHHHHHHHH-----------------------------------------------HhccchhHHH
Confidence 1233333333333332 3456788999
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHH---HHHHHhhhccCcCCCccCCcccHHHHH
Q 006201 384 REAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWT---LGRMFEFLHGSTLETPIINQGNCQQII 460 (657)
Q Consensus 384 r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~---l~~l~~~~~~~~~~~~~~~~~~~~~il 460 (657)
|+|++.|+..+..+...+.+...++++...+.+.. .|-+..||.+|-.+ +++++-...+. .++....+.+..++
T Consensus 1056 ReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~--~~~~~~~~~l~~iL 1132 (1702)
T KOG0915|consen 1056 REASCLALADLLQGRPFDQVKEKLPELWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDV--TNGAKGKEALDIIL 1132 (1702)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhccc--CCcccHHHHHHHHH
Confidence 99999999999999755677788899999999988 99999999988555 44444443322 12345667888888
Q ss_pred HHHHHH--cccchHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchh--------hhHHHHHHHH
Q 006201 461 SVLLQS--MKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGE--------SRLRTAAYET 530 (657)
Q Consensus 461 ~~l~~~--l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~--------~~~~~~~~~a 530 (657)
|.|+.. +++-+.||..+..++..+.+.. +..+.||++.+++.|++..+.-+.+- .+...++++.
T Consensus 1133 PfLl~~gims~v~evr~~si~tl~dl~Kss------g~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt 1206 (1702)
T KOG0915|consen 1133 PFLLDEGIMSKVNEVRRFSIGTLMDLAKSS------GKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDT 1206 (1702)
T ss_pred HHHhccCcccchHHHHHHHHHHHHHHHHhc------hhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHH
Confidence 888763 3345889999999999888853 56899999999999999887654110 0111234443
Q ss_pred H-HHHHHhcc-----cccHHHH-----HHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchh
Q 006201 531 L-NEVVRCST-----DETAPMV-----MQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTK 599 (657)
Q Consensus 531 l-~~l~~~~~-----~~~~~~~-----~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 599 (657)
+ .+.++.+| +.+.+|+ .++.|.+.+..+..+ +-. -|..+..++..++..+|.+
T Consensus 1207 ~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sV-----gl~-------Tkvg~A~fI~~L~~r~~~e---- 1270 (1702)
T KOG0915|consen 1207 LRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSV-----GLG-------TKVGCASFISLLVQRLGSE---- 1270 (1702)
T ss_pred HHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccC-----CCC-------cchhHHHHHHHHHHHhccc----
Confidence 3 22333333 1223332 234444444333321 111 1335667888899999999
Q ss_pred hHhhHHHHHHHHHHHHHHcccCCcchhhHHHHHHHHHHHhch-hhhhcccccc
Q 006201 600 YVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGL-CHHRRCCWGL 651 (657)
Q Consensus 600 ~~~~~~~~~i~~~l~~~l~~~~~~v~~~~~~~l~~l~~~~g~-~f~~y~~~~~ 651 (657)
+.||...++..++..+.++++.++.....++|.|+..... ++..|+.-.+
T Consensus 1271 --mtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l 1321 (1702)
T KOG0915|consen 1271 --MTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLL 1321 (1702)
T ss_pred --cCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997663 6666655433
No 26
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.73 E-value=1.8e-13 Score=156.63 Aligned_cols=552 Identities=14% Similarity=0.124 Sum_probs=342.0
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHhcC--------cccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhh
Q 006201 8 ILLNAQSVDGTVRKQAEESLKQYQEQN--------LPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELV 79 (657)
Q Consensus 8 ~l~~~~s~d~~~r~~A~~~L~~~~~~~--------~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~ 79 (657)
++..+.++++..+..|...|..+.... -.+.++.|++++.+ +.+..+|..|+..|.++....
T Consensus 194 LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~s-g~~~~VRE~AA~AL~nLAs~s--------- 263 (2102)
T PLN03200 194 LVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQ-GNEVSVRAEAAGALEALSSQS--------- 263 (2102)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcc-CCChHHHHHHHHHHHHHhcCC---------
Confidence 444455678888888888775443221 15678889998876 356799999999999977532
Q ss_pred hhcccCChHHHHHH-----HHHHHHhcCCCC---------hHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCC-C
Q 006201 80 QRWLSLDSSVKAQI-----KSFILKTLSSPA---------HDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQL-P 144 (657)
Q Consensus 80 ~~~~~l~~~~~~~i-----~~~ll~~l~~~~---------~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~-~ 144 (657)
++.+..| .+.|++.+.+++ ..++.++..+|+.|+... +.+++.|.+.+.+. +
T Consensus 264 -------~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~------~~ll~~L~~ll~s~rd 330 (2102)
T PLN03200 264 -------KEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM------SALILYLGELSESPRS 330 (2102)
T ss_pred -------HHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc------hhhHHHHHHhhcccch
Confidence 2222222 234555555433 356888999999988642 45666665555443 2
Q ss_pred hhHHHHHHHH--------------------------HHHHhhhccccccchhhH-------------------hHHHHHH
Q 006201 145 PHTKQATLET--------------------------LGYICEEVSSDAVEQDHV-------------------NKILTAV 179 (657)
Q Consensus 145 ~~~~~~~l~~--------------------------l~~i~~~~~~~~l~~~~~-------------------~~l~~~l 179 (657)
....-.++.+ |..+++.-++... ...+ ...++.+
T Consensus 331 ~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~v-qe~V~eALasl~gN~~l~~~L~~~daik~L 409 (2102)
T PLN03200 331 PAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLV-QERIIEALASLYGNAYLSRKLNHAEAKKVL 409 (2102)
T ss_pred HHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchh-HHHHHHHHHHhcCChHHHHHHHhccchhhh
Confidence 2211122222 2233322111110 0000 0111223
Q ss_pred HhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHH
Q 006201 180 VQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ 259 (657)
Q Consensus 180 ~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 259 (657)
+..+. ..+.+++..++.++..+...-.+... .......++.+..++..++..++..++..++.++....+.....+.
T Consensus 410 V~LL~--~~~~evQ~~Av~aL~~L~~~~~e~~~-aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIie 486 (2102)
T PLN03200 410 VGLIT--MATADVQEELIRALSSLCCGKGGLWE-ALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITA 486 (2102)
T ss_pred hhhhc--cCCHHHHHHHHHHHHHHhCCCHHHHH-HHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33333 34567777777777775532111000 0000124677788888888999999999999988654433322232
Q ss_pred -HHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhh--hhHHHHHHHHhhhhcCcc
Q 006201 260 -DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHAL--PVLVPLLLETLLKQEEDQ 336 (657)
Q Consensus 260 -~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~l~~~l~~~l~~~~~d~ 336 (657)
..++.+...+.+.++.++..|...+..++....+ .+..+ ...+|.+++.+...
T Consensus 487 aGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~q--------------------ir~iV~~aGAIppLV~LL~sg---- 542 (2102)
T PLN03200 487 AGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSED--------------------IRACVESAGAVPALLWLLKNG---- 542 (2102)
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHH--------------------HHHHHHHCCCHHHHHHHHhCC----
Confidence 5788888888888999999999998888853211 11111 13566666666531
Q ss_pred ccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHH---HHHHHHH
Q 006201 337 DQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPL---VNIALNF 413 (657)
Q Consensus 337 ~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~---~~~i~~~ 413 (657)
++..+..|..+|..+........++.+. ..+.+++.+.+..++.+++.+......+..... -...++.
T Consensus 543 -----d~~~q~~Aa~AL~nLi~~~d~~~I~~Lv----~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~ 613 (2102)
T PLN03200 543 -----GPKGQEIAAKTLTKLVRTADAATISQLT----ALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRT 613 (2102)
T ss_pred -----CHHHHHHHHHHHHHHHhccchhHHHHHH----HHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHH
Confidence 2567788999999987754444444433 445666667777788899888664322211111 1357889
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCC
Q 006201 414 MLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAI 492 (657)
Q Consensus 414 l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~ 492 (657)
+...+ ++++..++..|+|++.+++..-.+ ....-.....+|.++..|.. +..++..|+++|.++.....
T Consensus 614 Lv~LL-~sgs~~ikk~Aa~iLsnL~a~~~d------~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~--- 683 (2102)
T PLN03200 614 LIQLL-SSSKEETQEKAASVLADIFSSRQD------LCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIK--- 683 (2102)
T ss_pred HHHHH-cCCCHHHHHHHHHHHHHHhcCChH------HHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCC---
Confidence 99999 999999999999999999885431 11222345678888888886 67899999999999986421
Q ss_pred CCCCCCchhH-HHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhcCChhHH
Q 006201 493 SPSSPLTPFF-QEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDER 571 (657)
Q Consensus 493 ~~~~~l~~~~-~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~ 571 (657)
......+. ...++.|++++...+ ..++..++.+|+.+++.......-.-...++.++..++.- + +
T Consensus 684 --~~q~~~~v~~GaV~pL~~LL~~~d---~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G-------~-~- 749 (2102)
T PLN03200 684 --ENRKVSYAAEDAIKPLIKLAKSSS---IEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREG-------T-L- 749 (2102)
T ss_pred --HHHHHHHHHcCCHHHHHHHHhCCC---hHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhC-------C-h-
Confidence 11122223 357888999997764 5788899999999998764321111134466777777641 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHH--HHHHHHHHHHcccCCcchhh--HHHHHHHHHHH-hchhhhhc
Q 006201 572 EKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYAD--QMMGLFLRVFAIRSATAHEE--AMLAIGALAYA-TGLCHHRR 646 (657)
Q Consensus 572 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~--~i~~~l~~~l~~~~~~v~~~--~~~~l~~l~~~-~g~~f~~y 646 (657)
..|..+..++..+++....++. +..|+. ..+..++..|+..+.+.... ++.+++.+++. .|..|.+
T Consensus 750 ----~~k~~Aa~AL~~L~~~~~~~~~----~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~- 820 (2102)
T PLN03200 750 ----EGKRNAARALAQLLKHFPVDDV----LKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSH- 820 (2102)
T ss_pred ----HHHHHHHHHHHHHHhCCChhHH----HHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCC-
Confidence 2456788888888887554321 334443 47888899999877766554 89999999984 4445543
Q ss_pred cccccc
Q 006201 647 CCWGLM 652 (657)
Q Consensus 647 ~~~~~~ 652 (657)
=+|..+
T Consensus 821 ~~~~~~ 826 (2102)
T PLN03200 821 PPWAVL 826 (2102)
T ss_pred CchhhH
Confidence 456554
No 27
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.71 E-value=1.5e-13 Score=157.28 Aligned_cols=578 Identities=12% Similarity=0.093 Sum_probs=343.1
Q ss_pred hHHHHHHHHhcCC--ChHHHHHHHHHHHHHHhcC---------cccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccch
Q 006201 3 AEVTQILLNAQSV--DGTVRKQAEESLKQYQEQN---------LPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKE 71 (657)
Q Consensus 3 ~~l~~~l~~~~s~--d~~~r~~A~~~L~~~~~~~---------~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~ 71 (657)
+++..+++.+.++ +++.|++|...|..+.+.+ -.++++.|+..|.+ .+..+|..|+..|.+.-..
T Consensus 13 ~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~s--g~~~vk~nAaaaL~nLS~~-- 88 (2102)
T PLN03200 13 ASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRS--GTLGAKVNAAAVLGVLCKE-- 88 (2102)
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcC--CCHHHHHHHHHHHHHHhcC--
Confidence 4678899999866 7789999999998876653 25677888999985 3688888888777764321
Q ss_pred hhhHHHhhhhcccCChHHH-----HHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCC------CchHHHHHHHhh
Q 006201 72 QHRKFELVQRWLSLDSSVK-----AQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQ------WPELIGALLSNI 140 (657)
Q Consensus 72 ~~~~~~~~~~~~~l~~~~~-----~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~------~~~l~~~l~~~l 140 (657)
++.+ ....+.|+..|.+.+...|..++.+|..++........ -.+.+|.|...+
T Consensus 89 ---------------e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL 153 (2102)
T PLN03200 89 ---------------EDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQL 153 (2102)
T ss_pred ---------------HHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHH
Confidence 1122 22334678888888899999999999999975310112 267789999998
Q ss_pred cCCC---hhHHHHHHHHHHHHhhhccccccchh-hHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhh
Q 006201 141 HQLP---PHTKQATLETLGYICEEVSSDAVEQD-HVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDME 216 (657)
Q Consensus 141 ~~~~---~~~~~~~l~~l~~i~~~~~~~~l~~~-~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~ 216 (657)
.+++ ..++..+..+|..++..- ...- .. .-...+|.++..+. +.++.++..|+.++..++...++... ...
T Consensus 154 ~~gsk~d~~L~~~Av~AL~nLs~~~-en~~-~~IIeaGaVp~LV~LLs--S~d~~lQ~eAa~aLa~Lass~ee~~~-aVI 228 (2102)
T PLN03200 154 QPGNKQDKVVEGLLTGALRNLCGST-DGFW-SATLEAGGVDILVKLLS--SGNSDAQANAASLLARLMMAFESSIS-KVL 228 (2102)
T ss_pred hCCchhhHHHHHHHHHHHHHHhcCc-cchH-HHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCChHHHH-HHH
Confidence 8764 234566678888888754 2211 11 12346888888888 57789999999988876643221100 000
Q ss_pred HHHHHHHHHhhccC-CcHHHHHHHHHHHHHHHHHHHHhhHHhHH-HHHHHHHHHHhcCC---------hHHHHHHHHHHH
Q 006201 217 RDYIMRVVCEATLS-PEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDE---------EPVALQAIEFWS 285 (657)
Q Consensus 217 ~~~il~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~---------~~v~~~a~~~~~ 285 (657)
....++.+.+++.+ .+..+|..+..+|..++...++.-...+. ..++.++..+.... ...+..++..+.
T Consensus 229 eaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALs 308 (2102)
T PLN03200 229 DAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALA 308 (2102)
T ss_pred HCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHH
Confidence 12346777777754 56789999999999999865543322221 23444444443222 345778888888
Q ss_pred HHhHHHHHhhhhc--------------------------CCCCCCCCC-Cc----hh---hHHH---h--hhhhHHHHH-
Q 006201 286 SVCDEEIDILEEY--------------------------GGDFSGDSD-IP----CF---YFIK---H--ALPVLVPLL- 325 (657)
Q Consensus 286 ~l~~~~~~~~~~~--------------------------~~~~~~~~~-~~----~~---~~~~---~--~l~~l~~~l- 325 (657)
.+|.......... .+...+... +. .+ ++.+ + ....+.+.+
T Consensus 309 NIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALa 388 (2102)
T PLN03200 309 NICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALA 388 (2102)
T ss_pred HHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHH
Confidence 8776321100000 000000000 00 00 0000 0 001111211
Q ss_pred --------HHHhhhhcCccc------cCCCcchHhhhHHHHHHHHHhhcCC---Cc-hhchHHHHHhhhcCcchhhHHHH
Q 006201 326 --------LETLLKQEEDQD------QDEGAWNIAMAGGTCLGLVARTVGD---DI-VPLVMPFVEENITKQEWRQREAA 387 (657)
Q Consensus 326 --------~~~l~~~~~d~~------~d~~~~~~r~~a~~~L~~l~~~~~~---~~-~~~l~~~l~~~l~~~~~~~r~aa 387 (657)
.+.+.+ .|-. -.-.+...+..+..+|..++..-.+ .+ -.-.+|.+.+.+.+++...|+.|
T Consensus 389 sl~gN~~l~~~L~~--~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A 466 (2102)
T PLN03200 389 SLYGNAYLSRKLNH--AEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYA 466 (2102)
T ss_pred HhcCChHHHHHHHh--ccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHH
Confidence 111111 0100 0001125677777888777754211 00 11234555556666777889999
Q ss_pred HHHHHHhhcCCCCCcchHHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccH--HHHHHHHH
Q 006201 388 TYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNC--QQIISVLL 464 (657)
Q Consensus 388 l~~l~~i~~~~~~~~~~~~~-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~--~~il~~l~ 464 (657)
+++++.++.+.. +.....+ ...+|.+++.| .+++..+|..|+|++++++..-. .....+ ..++|.|+
T Consensus 467 ~~~L~nLa~~nd-enr~aIieaGaIP~LV~LL-~s~~~~iqeeAawAL~NLa~~~~--------qir~iV~~aGAIppLV 536 (2102)
T PLN03200 467 VALLAILTDEVD-ESKWAITAAGGIPPLVQLL-ETGSQKAKEDSATVLWNLCCHSE--------DIRACVESAGAVPALL 536 (2102)
T ss_pred HHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCcH--------HHHHHHHHCCCHHHHH
Confidence 999999987642 2222222 34789999999 99999999999999999997421 112223 35788888
Q ss_pred HHccc-chHHHHHHHHHHHHHHhhccCCC---------CCCCCCchh-----------------------HHHHHHHHHH
Q 006201 465 QSMKD-VPNVAEKACGALYFLAQGFEDAI---------SPSSPLTPF-----------------------FQEIVQALLT 511 (657)
Q Consensus 465 ~~l~d-~~~v~~~a~~al~~l~~~~~~~~---------~~~~~l~~~-----------------------~~~i~~~L~~ 511 (657)
+.|.+ +++++..|+++|.+++..-.... .....+..+ ....++.|..
T Consensus 537 ~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~ 616 (2102)
T PLN03200 537 WLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQ 616 (2102)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHH
Confidence 88886 68899999999999865311000 000000000 0123444555
Q ss_pred hhccccchhhhHHHHHHHHHHHHHHhcccccHH-HHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHH
Q 006201 512 VTHREDAGESRLRTAAYETLNEVVRCSTDETAP-MVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQ 590 (657)
Q Consensus 512 ~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 590 (657)
++...+ ...++.+..+|+.+....++.... .....+|+++..+... +. .++..+..+++.+.+
T Consensus 617 LL~sgs---~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~-------~~------~v~keAA~AL~nL~~ 680 (2102)
T PLN03200 617 LLSSSK---EETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNN-------TE------AVATQSARALAALSR 680 (2102)
T ss_pred HHcCCC---HHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC-------Ch------HHHHHHHHHHHHHHh
Confidence 554432 456667777777777654432222 2234566677666531 11 234468888888887
Q ss_pred HhCCCcchhhHhhHHHH-HHHHHHHHHHcccCCcchhhHHHHHHHHHH
Q 006201 591 KLGSSEQTKYVFMQYAD-QMMGLFLRVFAIRSATAHEEAMLAIGALAY 637 (657)
Q Consensus 591 ~~~~~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~v~~~~~~~l~~l~~ 637 (657)
....+. ...++. ..++.+++.++..+..+++.++.+++.++.
T Consensus 681 ~~~~~q-----~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~ 723 (2102)
T PLN03200 681 SIKENR-----KVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLS 723 (2102)
T ss_pred CCCHHH-----HHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHc
Confidence 322221 122333 488889999999888999999999999886
No 28
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.70 E-value=4e-13 Score=144.22 Aligned_cols=510 Identities=15% Similarity=0.148 Sum_probs=338.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhc--CcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhh
Q 006201 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQ--NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (657)
Q Consensus 4 ~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~--~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (657)
++..+++... .+...|+.|-..|-.+... +...+...++..+. +.+...|.++-.++..+...
T Consensus 8 el~~~~~~~~-~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~--s~~~~~Krl~yl~l~~~~~~------------ 72 (526)
T PF01602_consen 8 ELAKILNSFK-IDISKKKEALKKLIYLMMLGYDISFLFMEVIKLIS--SKDLELKRLGYLYLSLYLHE------------ 72 (526)
T ss_dssp HHHHHHHCSS-THHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCS--SSSHHHHHHHHHHHHHHTTT------------
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhc------------
Confidence 4444555444 4667777777777644332 44555555666666 46899999999998886653
Q ss_pred cccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhh
Q 006201 82 WLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEE 161 (657)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~ 161 (657)
+++....+.+.+.+-+.++++.+|..|-.+++.+...+ ..+.+++.+.+.+.++++.+|..|+.++..+.+.
T Consensus 73 ----~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~----~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~ 144 (526)
T PF01602_consen 73 ----DPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTPE----MAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRK 144 (526)
T ss_dssp ----SHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHH----HHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH
T ss_pred ----chhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccc----hhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc
Confidence 34455667788888999999999999999999988544 5688999999999999999999999999999988
Q ss_pred ccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHH
Q 006201 162 VSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241 (657)
Q Consensus 162 ~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~ 241 (657)
. |+.+ ... +++.+.+.+. |.++.|+.+|+.++..+ ..-++.+. .....+.+.+...+...++-.+..+++
T Consensus 145 ~-p~~~-~~~---~~~~l~~lL~--d~~~~V~~~a~~~l~~i-~~~~~~~~--~~~~~~~~~L~~~l~~~~~~~q~~il~ 214 (526)
T PF01602_consen 145 D-PDLV-EDE---LIPKLKQLLS--DKDPSVVSAALSLLSEI-KCNDDSYK--SLIPKLIRILCQLLSDPDPWLQIKILR 214 (526)
T ss_dssp C-HCCH-HGG---HHHHHHHHTT--HSSHHHHHHHHHHHHHH-HCTHHHHT--THHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred C-HHHH-HHH---HHHHHhhhcc--CCcchhHHHHHHHHHHH-ccCcchhh--hhHHHHHHHhhhcccccchHHHHHHHH
Confidence 6 6654 221 6778888887 78899999999999987 22122111 122455666666656777778888888
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhH
Q 006201 242 CLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVL 321 (657)
Q Consensus 242 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 321 (657)
.+..++...+..... ..+++.+...+.+.++.+...++.++..+.... . .+..+
T Consensus 215 ~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~--------------------~----~~~~~ 268 (526)
T PF01602_consen 215 LLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSP--------------------E----LLQKA 268 (526)
T ss_dssp HHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSH--------------------H----HHHHH
T ss_pred HHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcch--------------------H----HHHhh
Confidence 888776554433311 346666666666667778777777665544321 1 33445
Q ss_pred HHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCC
Q 006201 322 VPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPE 401 (657)
Q Consensus 322 ~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~ 401 (657)
++.+...+.. .+.++|..+.++|..++...+..+. .....+.....+++..+|..++..+..+++. .
T Consensus 269 ~~~L~~lL~s---------~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~---~ 335 (526)
T PF01602_consen 269 INPLIKLLSS---------SDPNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANE---S 335 (526)
T ss_dssp HHHHHHHHTS---------SSHHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--H---H
T ss_pred HHHHHHHhhc---------ccchhehhHHHHHHHhhcccchhhh-hhhhhhheecCCCChhHHHHHHHHHhhcccc---c
Confidence 5666665552 1246888888888888776532222 1111122223367778999999999998863 2
Q ss_pred cchHHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHH
Q 006201 402 KLVPLVNIALNFMLTALMQDP-NNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACG 479 (657)
Q Consensus 402 ~~~~~~~~i~~~l~~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~ 479 (657)
.+..+++.+.+.+ .+. ++.+|..++..++.++...+ ......++.+++.+.. ...+...+..
T Consensus 336 ----n~~~Il~eL~~~l-~~~~d~~~~~~~i~~I~~la~~~~-----------~~~~~~v~~l~~ll~~~~~~~~~~~~~ 399 (526)
T PF01602_consen 336 ----NVKEILDELLKYL-SELSDPDFRRELIKAIGDLAEKFP-----------PDAEWYVDTLLKLLEISGDYVSNEIIN 399 (526)
T ss_dssp ----HHHHHHHHHHHHH-HHC--HHHHHHHHHHHHHHHHHHG-----------SSHHHHHHHHHHHHHCTGGGCHCHHHH
T ss_pred ----chhhHHHHHHHHH-HhccchhhhhhHHHHHHHHHhccC-----------chHHHHHHHHHHhhhhccccccchHHH
Confidence 2455666666666 444 67799999999999999874 2345566677776664 4566777778
Q ss_pred HHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Q 006201 480 ALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQ 559 (657)
Q Consensus 480 al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 559 (657)
.+..++.... ..-..++..+...+.+.. +..++..++..+|......++. . ....++..+.+.+..
T Consensus 400 ~i~~ll~~~~----------~~~~~~l~~L~~~l~~~~--~~~~~~~~~wilGEy~~~~~~~-~-~~~~~~~~l~~~~~~ 465 (526)
T PF01602_consen 400 VIRDLLSNNP----------ELREKILKKLIELLEDIS--SPEALAAAIWILGEYGELIENT-E-SAPDILRSLIENFIE 465 (526)
T ss_dssp HHHHHHHHST----------TTHHHHHHHHHHHHTSSS--SHHHHHHHHHHHHHHCHHHTTT-T-HHHHHHHHHHHHHTT
T ss_pred HHHHHhhcCh----------hhhHHHHHHHHHHHHHhh--HHHHHHHHHhhhcccCCccccc-c-cHHHHHHHHHHhhcc
Confidence 8888876521 123455777777777654 3567778888888888877751 1 233333333333321
Q ss_pred HHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHc--ccCCcchhhHHHHHHHHH
Q 006201 560 TLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFA--IRSATAHEEAMLAIGALA 636 (657)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~--~~~~~v~~~~~~~l~~l~ 636 (657)
+. ..+|..++.++..+....+..+ ..+.+++.+.+..+ ..+.+||+-|...+.-+-
T Consensus 466 ---------~~----~~vk~~ilt~~~Kl~~~~~~~~--------~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~ 523 (526)
T PF01602_consen 466 ---------ES----PEVKLQILTALAKLFKRNPENE--------VQNEILQFLLSLATEDSSDPEVRDRAREYLRLLN 523 (526)
T ss_dssp ---------SH----HHHHHHHHHHHHHHHHHSCSTT--------HHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHHH
T ss_pred ---------cc----HHHHHHHHHHHHHHHhhCCchh--------hHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHc
Confidence 11 1467788888888888866542 34477777777777 568899999988877653
No 29
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=1.3e-13 Score=134.34 Aligned_cols=395 Identities=14% Similarity=0.170 Sum_probs=280.8
Q ss_pred HHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHH-HhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHh
Q 006201 179 VVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVV-CEATLSPEVKIRQAAFECLVAISSTYYEKLAPY 257 (657)
Q Consensus 179 l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l-~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 257 (657)
+..++. |...+-|++|.--+-.++.-.-.+ .+......+++.+ ..++..++...|+..+-.+...+-..+..-.+|
T Consensus 5 i~r~lt--dKlYekRKaaalelEk~Vk~l~~~-~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y 81 (675)
T KOG0212|consen 5 IARGLT--DKLYEKRKAAALELEKLVKDLVNN-NDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGY 81 (675)
T ss_pred hhhhhh--hHHHHHHHHHHHHHHHHHHHHHcc-CcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHH
Confidence 344555 667777877766666655421111 0111124566644 445566666667777666666554444444569
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccc
Q 006201 258 IQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQD 337 (657)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~ 337 (657)
+..+++.++.++.|.+..+|..|++.+..++.... .-+..+++.++..+.+..++.+
T Consensus 82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k-------------------~~v~~~Fn~iFdvL~klsaDsd---- 138 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAK-------------------GEVLVYFNEIFDVLCKLSADSD---- 138 (675)
T ss_pred HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhc-------------------cCcccchHHHHHHHHHHhcCCc----
Confidence 99999999999999999999999999999887531 1123444556666655444221
Q ss_pred cCCCcchHhhhHHHHHHHHHhhcC--C--C-chhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHH
Q 006201 338 QDEGAWNIAMAGGTCLGLVARTVG--D--D-IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALN 412 (657)
Q Consensus 338 ~d~~~~~~r~~a~~~L~~l~~~~~--~--~-~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~ 412 (657)
.++| .+++.++++.+... . . -++.++|.+.+.+...++..|..-+.++..+-... .-.+-.|++.+++
T Consensus 139 -----~~V~-~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P-~~~m~~yl~~~ld 211 (675)
T KOG0212|consen 139 -----QNVR-GGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVP-DLEMISYLPSLLD 211 (675)
T ss_pred -----cccc-cHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC-cHHHHhcchHHHH
Confidence 2344 56788999887652 1 2 27899999999998889999999999988877654 4567789999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCC
Q 006201 413 FMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDA 491 (657)
Q Consensus 413 ~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~ 491 (657)
.+...| .|++..||..+-.+++.+-..+.+. |.. --.+.+++.++..++. ++.++..|...+..|+...
T Consensus 212 GLf~~L-sD~s~eVr~~~~t~l~~fL~eI~s~----P~s--~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~--- 281 (675)
T KOG0212|consen 212 GLFNML-SDSSDEVRTLTDTLLSEFLAEIRSS----PSS--MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIP--- 281 (675)
T ss_pred HHHHHh-cCCcHHHHHHHHHHHHHHHHHHhcC----ccc--cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCC---
Confidence 999999 9999999999999999998887632 211 1457788899998886 6899999999999999864
Q ss_pred CCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccH---HHHHHHHHHHHHHHHHHHhhhcCCh
Q 006201 492 ISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETA---PMVMQLVPLIMMELHQTLEAQKLSS 568 (657)
Q Consensus 492 ~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~~ 568 (657)
+..+.+|+..++..++.++.+.+. .+.++.+...=+.+.+..+.... --+..++..+.+.+..
T Consensus 282 ---g~~~l~~~s~il~~iLpc~s~~e~--~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~--------- 347 (675)
T KOG0212|consen 282 ---GRDLLLYLSGILTAILPCLSDTEE--MSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSD--------- 347 (675)
T ss_pred ---CcchhhhhhhhhhhcccCCCCCcc--ccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhc---------
Confidence 567889999999999999988763 34554444433334443332111 1233444444444432
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHcccCCcchhhHHHHHHHHHHHhc
Q 006201 569 DEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATG 640 (657)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~~~~l~~l~~~~g 640 (657)
+. .+.|-.+++++..+-...+.+ +.-+.++|++.+++.|++++.+|..-++..++.++..-.
T Consensus 348 -~~---~~tri~~L~Wi~~l~~~~p~q------l~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 348 -DR---EETRIAVLNWIILLYHKAPGQ------LLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSN 409 (675)
T ss_pred -ch---HHHHHHHHHHHHHHHhhCcch------hhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc
Confidence 22 134667999999999999999 999999999999999999998898888888888887554
No 30
>PTZ00429 beta-adaptin; Provisional
Probab=99.63 E-value=1.9e-10 Score=123.04 Aligned_cols=438 Identities=11% Similarity=0.026 Sum_probs=274.9
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCcccHHHHHHHHHh-c-CCCChhHHHHHHHHHhhhcccchhhhHHHhh
Q 006201 2 SAEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELV-N-DEKPVESRKLAGLILKNALDAKEQHRKFELV 79 (657)
Q Consensus 2 ~~~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~-~-~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~ 79 (657)
..-+..++..+.++|.++|+-..-++..+.+.+++ .....++.+. + .+.++.+|.+|...+.+.-
T Consensus 67 S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pe-lalLaINtl~KDl~d~Np~IRaLALRtLs~Ir------------ 133 (746)
T PTZ00429 67 SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPE-KALLAVNTFLQDTTNSSPVVRALAVRTMMCIR------------ 133 (746)
T ss_pred hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC------------
Confidence 33456677777777888888888888877665433 2222222222 1 1357788888887777632
Q ss_pred hhcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCC-CCchHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 006201 80 QRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHK-QWPELIGALLSNIHQLPPHTKQATLETLGYI 158 (657)
Q Consensus 80 ~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i 158 (657)
.++..+.+...+.+++.+.++.||+.|+.++.++.... |+- .-.++++.+.+++.+.++.+..+|+.+|..+
T Consensus 134 ------~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~-pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI 206 (746)
T PTZ00429 134 ------VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD-MQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEV 206 (746)
T ss_pred ------cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-cccccccchHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 34566667777888999999999999999999998865 421 1235778888889999999999999999999
Q ss_pred hhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHH
Q 006201 159 CEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQA 238 (657)
Q Consensus 159 ~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~ 238 (657)
.+.. +..+ ......+..+...+. +-++=.+...+++|.. +.+. .......+++.+...++..++.|.-+
T Consensus 207 ~~~~-~~~l--~l~~~~~~~Ll~~L~--e~~EW~Qi~IL~lL~~---y~P~---~~~e~~~il~~l~~~Lq~~N~AVVl~ 275 (746)
T PTZ00429 207 NDYG-SEKI--ESSNEWVNRLVYHLP--ECNEWGQLYILELLAA---QRPS---DKESAETLLTRVLPRMSHQNPAVVMG 275 (746)
T ss_pred HHhC-chhh--HHHHHHHHHHHHHhh--cCChHHHHHHHHHHHh---cCCC---CcHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 8765 4433 222333444555555 4445556667776644 3322 11223467888888888888999999
Q ss_pred HHHHHHHHHHHH-HHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhh
Q 006201 239 AFECLVAISSTY-YEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHA 317 (657)
Q Consensus 239 ~~~~l~~l~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (657)
+++++..+.... ++.+...+..+-..++.. .+.+++++..+++-+..+....+. .+.+.
T Consensus 276 Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P~-------------------lf~~~ 335 (746)
T PTZ00429 276 AIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFPN-------------------LLRTN 335 (746)
T ss_pred HHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCHH-------------------HHHHH
Confidence 999888776432 232333333333333333 456778888888777666653221 12211
Q ss_pred hhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcC
Q 006201 318 LPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEG 397 (657)
Q Consensus 318 l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~ 397 (657)
+. ..+- . . .| ...+|....+.|..++ .+.-+..++.-+.++..+.+...+..++.++|.++..
T Consensus 336 ~~----~Ff~--~-~-~D------p~yIK~~KLeIL~~La---ne~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k 398 (746)
T PTZ00429 336 LD----SFYV--R-Y-SD------PPFVKLEKLRLLLKLV---TPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIK 398 (746)
T ss_pred HH----hhhc--c-c-CC------cHHHHHHHHHHHHHHc---CcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Confidence 11 1111 1 1 11 1246665556555554 3444556667777788788888999999999999865
Q ss_pred CCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHc--c--cchHH
Q 006201 398 PSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSM--K--DVPNV 473 (657)
Q Consensus 398 ~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l--~--d~~~v 473 (657)
. ......++..++..+ .+....+. .++.++..+....+ .. .++..+...+ . +++..
T Consensus 399 ~-----~~~a~~cV~~Ll~ll-~~~~~~v~-e~i~vik~IlrkyP----------~~---~il~~L~~~~~~~~i~e~~A 458 (746)
T PTZ00429 399 V-----DSVAPDCANLLLQIV-DRRPELLP-QVVTAAKDIVRKYP----------EL---LMLDTLVTDYGADEVVEEEA 458 (746)
T ss_pred C-----hHHHHHHHHHHHHHh-cCCchhHH-HHHHHHHHHHHHCc----------cH---HHHHHHHHhhcccccccHHH
Confidence 4 234566777777877 65444443 45666666655543 11 1455665544 2 25888
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccc
Q 006201 474 AEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDE 541 (657)
Q Consensus 474 ~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~ 541 (657)
+....|.++.+++... ..+.++..+++-+... +..+|..++.+...+.-..+..
T Consensus 459 KaaiiWILGEy~~~I~-----------~a~~~L~~~i~~f~~E---~~~VqlqlLta~vKlfl~~p~~ 512 (746)
T PTZ00429 459 KVSLLWMLGEYCDFIE-----------NGKDIIQRFIDTIMEH---EQRVQLAILSAAVKMFLRDPQG 512 (746)
T ss_pred HHHHHHHHHhhHhhHh-----------hHHHHHHHHHhhhccC---CHHHHHHHHHHHHHHHhcCcHH
Confidence 8888999999987532 2344554444444333 3567877888887777776643
No 31
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.62 E-value=7.2e-12 Score=134.52 Aligned_cols=443 Identities=16% Similarity=0.181 Sum_probs=271.6
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhc--CCCChhHHHHHHHHHhhhcccchhhhHHHhhhhc
Q 006201 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVN--DEKPVESRKLAGLILKNALDAKEQHRKFELVQRW 82 (657)
Q Consensus 5 l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~--~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~ 82 (657)
+.++++.+.+.|...|+-+.-.+..+...+++ .+....+.+.. .+.++.+|.+|...+.+..
T Consensus 44 ~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~-~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~--------------- 107 (526)
T PF01602_consen 44 FMEVIKLISSKDLELKRLGYLYLSLYLHEDPE-LLILIINSLQKDLNSPNPYIRGLALRTLSNIR--------------- 107 (526)
T ss_dssp HHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH-HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh-HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---------------
Confidence 45677777788999999999999999877544 33333333332 1468899999999998843
Q ss_pred ccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCch-HHHHHHHhhcCCChhHHHHHHHHHHHHhhh
Q 006201 83 LSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPE-LIGALLSNIHQLPPHTKQATLETLGYICEE 161 (657)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~-l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~ 161 (657)
+++..+.+.+.+.+++.++++.||+.|+.++..+.+.. | +..+. +++.+.+.+.+.++.++.+|+.++..+ +
T Consensus 108 ---~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~-p-~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~- 180 (526)
T PF01602_consen 108 ---TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKD-P-DLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-K- 180 (526)
T ss_dssp ---SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-H-CCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-H-
T ss_pred ---ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC-H-HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-c-
Confidence 45666778888899999999999999999999999986 5 34444 799999999999999999999999998 2
Q ss_pred ccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhc------------------------------
Q 006201 162 VSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANF------------------------------ 211 (657)
Q Consensus 162 ~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~------------------------------ 211 (657)
.+++.. ......++..+.+.+. +.++-++..+++++..+...-....
T Consensus 181 ~~~~~~-~~~~~~~~~~L~~~l~--~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~ 257 (526)
T PF01602_consen 181 CNDDSY-KSLIPKLIRILCQLLS--DPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIK 257 (526)
T ss_dssp CTHHHH-TTHHHHHHHHHHHHHT--CCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchh-hhhHHHHHHHhhhccc--ccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 212211 1223333333333333 4555555555555554322110000
Q ss_pred --CChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhH
Q 006201 212 --SNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCD 289 (657)
Q Consensus 212 --~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~ 289 (657)
........+++.+..++.++++.+|-.+++++..++...+..+. +.... +.....+++..+|..+++.+..++.
T Consensus 258 l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~---~~~l~~~~d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 258 LSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQSLI---LFFLLYDDDPSIRKKALDLLYKLAN 333 (526)
T ss_dssp HSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-THHHH---HHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred hhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-hhhhh---hheecCCCChhHHHHHHHHHhhccc
Confidence 00001122344444455555555666666666655555432222 11111 1111224555666666666655554
Q ss_pred HHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchH
Q 006201 290 EEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVM 369 (657)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~ 369 (657)
.. ....+++.+.+.+.... +.+++..+...+..++..++.. ....+
T Consensus 334 ~~-------------------------n~~~Il~eL~~~l~~~~--------d~~~~~~~i~~I~~la~~~~~~-~~~~v 379 (526)
T PF01602_consen 334 ES-------------------------NVKEILDELLKYLSELS--------DPDFRRELIKAIGDLAEKFPPD-AEWYV 379 (526)
T ss_dssp HH-------------------------HHHHHHHHHHHHHHHC----------HHHHHHHHHHHHHHHHHHGSS-HHHHH
T ss_pred cc-------------------------chhhHHHHHHHHHHhcc--------chhhhhhHHHHHHHHHhccCch-HHHHH
Confidence 21 12334555555553221 1257888888999888877532 23334
Q ss_pred HHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCc
Q 006201 370 PFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETP 449 (657)
Q Consensus 370 ~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 449 (657)
+.+.+.+...+......+...+..+.... ++.. ..++..+...+..-.++.++.+++|++|+++....
T Consensus 380 ~~l~~ll~~~~~~~~~~~~~~i~~ll~~~-~~~~----~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~------- 447 (526)
T PF01602_consen 380 DTLLKLLEISGDYVSNEIINVIRDLLSNN-PELR----EKILKKLIELLEDISSPEALAAAIWILGEYGELIE------- 447 (526)
T ss_dssp HHHHHHHHCTGGGCHCHHHHHHHHHHHHS-TTTH----HHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHT-------
T ss_pred HHHHHhhhhccccccchHHHHHHHHhhcC-hhhh----HHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCccc-------
Confidence 44445555455566777777787777543 2322 33456666666233778899999999999999875
Q ss_pred cCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHH
Q 006201 450 IINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAY 528 (657)
Q Consensus 450 ~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~ 528 (657)
... ....++..+.+.+.+ ++.|+.....++..+...... . ...+.+++.+.+.....+. +..+|..+.
T Consensus 448 -~~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~-----~---~~~~~i~~~~~~~~~~~s~-~~evr~Ra~ 516 (526)
T PF01602_consen 448 -NTE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPE-----N---EVQNEILQFLLSLATEDSS-DPEVRDRAR 516 (526)
T ss_dssp -TTT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCS-----T---THHHHHHHHHHCHHHHS-S-SHHHHHHHH
T ss_pred -ccc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCc-----h---hhHHHHHHHHHHHhccCCC-CHHHHHHHH
Confidence 112 667778888887775 578999999999988876321 1 2344677777776662111 467887777
Q ss_pred HHHHHH
Q 006201 529 ETLNEV 534 (657)
Q Consensus 529 ~al~~l 534 (657)
+.+.-+
T Consensus 517 ~y~~ll 522 (526)
T PF01602_consen 517 EYLRLL 522 (526)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 32
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.62 E-value=4.8e-12 Score=127.05 Aligned_cols=488 Identities=11% Similarity=0.170 Sum_probs=289.4
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCC
Q 006201 106 HDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNA 185 (657)
Q Consensus 106 ~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~ 185 (657)
...|..--.+|+.+++.. .....+..+---+.+.++-+|....++++.++..+. +..++|.+.....+
T Consensus 455 ~yar~egreIisnLakaa----Gla~mistmrpDidn~deYVRnttarafavvasalg--------ip~llpfLkavc~S 522 (1172)
T KOG0213|consen 455 YYARVEGREIISNLAKAA----GLATMISTMRPDIDNKDEYVRNTTARAFAVVASALG--------IPALLPFLKAVCGS 522 (1172)
T ss_pred HHHhhchHHHHHHHHHHh----hhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHhC--------cHHHHHHHHHHhcc
Confidence 333444444555555543 223333334334556678888888888888777652 24556666655553
Q ss_pred CCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHH
Q 006201 186 SESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNIT 265 (657)
Q Consensus 186 ~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~ 265 (657)
..+++-|..+++|...+..++.-... .+...++.++...+.+.+..+|.....++..+++..+.+=...+..++..+
T Consensus 523 -kkSwqaRhTgIkivqqIail~Gcsvl--phl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpL 599 (1172)
T KOG0213|consen 523 -KKSWQARHTGIKIVQQIAILSGCSVL--PHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPL 599 (1172)
T ss_pred -ccchhhhchhhHHHHHHHHHhcchhh--hhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 56899999999999998766432111 122567778888888889999999999999998876544344456667777
Q ss_pred HHHHhcCCh-HH--HHHHHHHHHHHhHHHHH----------hhhhcC-CC----------------CCCCCCCchhhHHH
Q 006201 266 AKAVREDEE-PV--ALQAIEFWSSVCDEEID----------ILEEYG-GD----------------FSGDSDIPCFYFIK 315 (657)
Q Consensus 266 ~~~~~~~~~-~v--~~~a~~~~~~l~~~~~~----------~~~~~~-~~----------------~~~~~~~~~~~~~~ 315 (657)
|+.+..... .. -..|+.++.-+.+.+.. +..++. ++ .+|-. ..|++
T Consensus 600 wkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~----~~y~r 675 (1172)
T KOG0213|consen 600 WKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVE----PAYIR 675 (1172)
T ss_pred HHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCC----HHHHh
Confidence 765543221 11 12223222222222110 001111 11 11100 01111
Q ss_pred hhhhhHHHHHHHH-----------------------hhhhcCcc-------ccCCCcchHhhhHHHHHHHHHhhcCCC--
Q 006201 316 HALPVLVPLLLET-----------------------LLKQEEDQ-------DQDEGAWNIAMAGGTCLGLVARTVGDD-- 363 (657)
Q Consensus 316 ~~l~~l~~~l~~~-----------------------l~~~~~d~-------~~d~~~~~~r~~a~~~L~~l~~~~~~~-- 363 (657)
..++|..+.. ..+...++ +--++.-..|+....+.+++...+|..
T Consensus 676 ---~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~di 752 (1172)
T KOG0213|consen 676 ---FDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADI 752 (1172)
T ss_pred ---hhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccc
Confidence 0122222211 00000000 001112356777888888887776532
Q ss_pred ---chhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Q 006201 364 ---IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEF 440 (657)
Q Consensus 364 ---~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~ 440 (657)
.-..++.-+...++.++-.. ...+..++.++... ....++|+++++..++..| +++.+.||..|+.++++++..
T Consensus 753 derleE~lidgil~Afqeqtt~d-~vml~gfg~V~~~l-g~r~kpylpqi~stiL~rL-nnksa~vRqqaadlis~la~V 829 (1172)
T KOG0213|consen 753 DERLEERLIDGILYAFQEQTTED-SVMLLGFGTVVNAL-GGRVKPYLPQICSTILWRL-NNKSAKVRQQAADLISSLAKV 829 (1172)
T ss_pred cHHHHHHHHHHHHHHHHhcccch-hhhhhhHHHHHHHH-hhccccchHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHH
Confidence 22233333333333322111 13456677777766 3667899999999999999 999999999999999999998
Q ss_pred hccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccch
Q 006201 441 LHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAG 519 (657)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~ 519 (657)
+.. +.....+..+=..|.+.|.. .|+|-.....|++.++...+ -..+.|-+..+++.|..++.+.
T Consensus 830 lkt------c~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvig-----m~km~pPi~dllPrltPILknr--- 895 (1172)
T KOG0213|consen 830 LKT------CGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIG-----MTKMTPPIKDLLPRLTPILKNR--- 895 (1172)
T ss_pred HHh------ccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhcc-----ccccCCChhhhcccchHhhhhh---
Confidence 751 12233455555667777874 68888888888888877643 3557788999999999999876
Q ss_pred hhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcch-
Q 006201 520 ESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQT- 598 (657)
Q Consensus 520 ~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~- 598 (657)
+++++++.++.++.++...++...+ ..-|-..++.++-.. .-..++|..+.+++|.|++++|..+..
T Consensus 896 heKVqen~IdLvg~IadrgpE~v~a--REWMRIcfeLlelLk----------ahkK~iRRaa~nTfG~IakaIGPqdVLa 963 (1172)
T KOG0213|consen 896 HEKVQENCIDLVGTIADRGPEYVSA--REWMRICFELLELLK----------AHKKEIRRAAVNTFGYIAKAIGPQDVLA 963 (1172)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHHHH----------HHHHHHHHHHHhhhhHHHHhcCHHHHHH
Confidence 4789999999999999998863221 222334444333221 011256778999999999999987521
Q ss_pred ------------------------hhHhhHHHHHHHHHHHHHHcccCCcchhhHHHHHHHHHHHhchhhhhc
Q 006201 599 ------------------------KYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGLCHHRR 646 (657)
Q Consensus 599 ------------------------~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~~~~l~~l~~~~g~~f~~y 646 (657)
-+++.|| .+++.+++-+..+...|+.-++.+++.+-..+|.--..|
T Consensus 964 tLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF--tVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdY 1033 (1172)
T KOG0213|consen 964 TLLNNLKVQERQNRVCTTVAIAIVAETCGPF--TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDY 1033 (1172)
T ss_pred HHHhcchHHHHHhchhhhhhhhhhhhhcCch--hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhH
Confidence 0112222 245555555555555666777777777777766544443
No 33
>PTZ00429 beta-adaptin; Provisional
Probab=99.61 E-value=2.5e-10 Score=122.04 Aligned_cols=508 Identities=9% Similarity=0.043 Sum_probs=309.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHh--cCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhh
Q 006201 4 EVTQILLNAQSVDGTVRKQAEESLKQYQE--QNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (657)
Q Consensus 4 ~l~~~l~~~~s~d~~~r~~A~~~L~~~~~--~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (657)
++.++-..+.+.|...|+.|-+.+-.+.. .+...+...++..+.+ .+..+|++.-+++.++.+.
T Consensus 33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S--~d~elKKLvYLYL~~ya~~------------ 98 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKLAPS--TDLELKKLVYLYVLSTARL------------ 98 (746)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHhCC--CCHHHHHHHHHHHHHHccc------------
Confidence 34555566667787777888777764433 2445566666676664 5899999999999987542
Q ss_pred cccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhh
Q 006201 82 WLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEE 161 (657)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~ 161 (657)
.++..-...+.+.+-+.++++.+|..|-.+++.|-. | ...+.+++.+.+++.+.++-+|..|..|+..+...
T Consensus 99 ----~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~---~-~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~ 170 (746)
T PTZ00429 99 ----QPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV---S-SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHD 170 (746)
T ss_pred ----ChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc---H-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 344455567888889999999999888777766543 3 35567888889999999999999999999999876
Q ss_pred ccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHH
Q 006201 162 VSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241 (657)
Q Consensus 162 ~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~ 241 (657)
. |+.+. ...+++.+...+. |.++.|...|+.+|..+....+..+. .. ...+..++..+.+-++=.+..+++
T Consensus 171 ~-pelv~---~~~~~~~L~~LL~--D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~-~~~~~~Ll~~L~e~~EW~Qi~IL~ 241 (746)
T PTZ00429 171 D-MQLFY---QQDFKKDLVELLN--DNNPVVASNAAAIVCEVNDYGSEKIE--SS-NEWVNRLVYHLPECNEWGQLYILE 241 (746)
T ss_pred C-ccccc---ccchHHHHHHHhc--CCCccHHHHHHHHHHHHHHhCchhhH--HH-HHHHHHHHHHhhcCChHHHHHHHH
Confidence 5 55431 1224455555566 89999999999999987653222111 01 122333333333322222334555
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhH
Q 006201 242 CLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVL 321 (657)
Q Consensus 242 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 321 (657)
.|.. ..|.. ......++..+...+++.++.|...|+..+..+.... .....+..+.++
T Consensus 242 lL~~---y~P~~-~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~------------------~~~~~~~~~~rl 299 (746)
T PTZ00429 242 LLAA---QRPSD-KESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRC------------------SQELIERCTVRV 299 (746)
T ss_pred HHHh---cCCCC-cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC------------------CHHHHHHHHHHH
Confidence 5533 11211 1223466777777788888888888887766654310 012233333344
Q ss_pred HHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCC
Q 006201 322 VPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPE 401 (657)
Q Consensus 322 ~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~ 401 (657)
.+.++..+.. ...++..+...+..+....+..+.+. +..+--..+|+. .+|...+..|..++...
T Consensus 300 ~~pLv~L~ss----------~~eiqyvaLr~I~~i~~~~P~lf~~~-~~~Ff~~~~Dp~-yIK~~KLeIL~~Lane~--- 364 (746)
T PTZ00429 300 NTALLTLSRR----------DAETQYIVCKNIHALLVIFPNLLRTN-LDSFYVRYSDPP-FVKLEKLRLLLKLVTPS--- 364 (746)
T ss_pred HHHHHHhhCC----------CccHHHHHHHHHHHHHHHCHHHHHHH-HHhhhcccCCcH-HHHHHHHHHHHHHcCcc---
Confidence 3433332221 12567777777877777665444333 222223335555 57899999999988642
Q ss_pred cchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHcccchHHHHHHHHHH
Q 006201 402 KLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGAL 481 (657)
Q Consensus 402 ~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al 481 (657)
. +..++.-+..+. .+.+..++..+..++|+++..++ .....++..|+..+.+...+...++.++
T Consensus 365 N----v~~IL~EL~eYa-~d~D~ef~r~aIrAIg~lA~k~~-----------~~a~~cV~~Ll~ll~~~~~~v~e~i~vi 428 (746)
T PTZ00429 365 V----APEILKELAEYA-SGVDMVFVVEVVRAIASLAIKVD-----------SVAPDCANLLLQIVDRRPELLPQVVTAA 428 (746)
T ss_pred c----HHHHHHHHHHHh-hcCCHHHHHHHHHHHHHHHHhCh-----------HHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 2 455667777777 78888999999999999998653 3457777778777765434445677888
Q ss_pred HHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Q 006201 482 YFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTL 561 (657)
Q Consensus 482 ~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 561 (657)
..+++... . .+ ++..|+..+......+...|...+..+|......++ ...++..+++.+.
T Consensus 429 k~IlrkyP------~---~~---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~-----a~~~L~~~i~~f~--- 488 (746)
T PTZ00429 429 KDIVRKYP------E---LL---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN-----GKDIIQRFIDTIM--- 488 (746)
T ss_pred HHHHHHCc------c---HH---HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh-----HHHHHHHHHhhhc---
Confidence 88877531 1 11 455555443211122466777778888887665432 1112212221111
Q ss_pred hhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHH-cc-cCCcchhhHHHHHHHH
Q 006201 562 EAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVF-AI-RSATAHEEAMLAIGAL 635 (657)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l-~~-~~~~v~~~~~~~l~~l 635 (657)
++.. .+|..++.+...+......+ . +.++..++..+ ++ .++++|.-|+..+.-+
T Consensus 489 ------~E~~----~VqlqlLta~vKlfl~~p~~------~----~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLL 544 (746)
T PTZ00429 489 ------EHEQ----RVQLAILSAAVKMFLRDPQG------M----EPQLNRVLETVTTHSDDPDVRDRAFAYWRLL 544 (746)
T ss_pred ------cCCH----HHHHHHHHHHHHHHhcCcHH------H----HHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 1222 45655666666665554333 3 33444455433 33 4678998888766444
No 34
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=3e-11 Score=118.09 Aligned_cols=409 Identities=15% Similarity=0.183 Sum_probs=282.7
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCC---chHHHHHHH-hhcCCChhHHHHHHHHHHHHhhhccccccchhhH
Q 006201 97 ILKTLSSPAHDARSTASQVVAKVAGIELPHKQW---PELIGALLS-NIHQLPPHTKQATLETLGYICEEVSSDAVEQDHV 172 (657)
Q Consensus 97 ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~---~~l~~~l~~-~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~ 172 (657)
+..++.+.-.+-|+++|.-+-++.+.....+.. ..++..+.. ...+++...|.+++..+....-..+.+.. .++
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~--~Y~ 82 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDA--GYL 82 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccH--HHH
Confidence 445666666677899999999999866553322 344443332 23456677778999888877666544433 489
Q ss_pred hHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHH
Q 006201 173 NKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYE 252 (657)
Q Consensus 173 ~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 252 (657)
..+++.++.+++ |++..+|..|++.++++.......+. .+.+.++..+.....+.+..++ .+.+.+.+++..-..
T Consensus 83 ~~iv~Pv~~cf~--D~d~~vRyyACEsLYNiaKv~k~~v~--~~Fn~iFdvL~klsaDsd~~V~-~~aeLLdRLikdIVt 157 (675)
T KOG0212|consen 83 EKIVPPVLNCFS--DQDSQVRYYACESLYNIAKVAKGEVL--VYFNEIFDVLCKLSADSDQNVR-GGAELLDRLIKDIVT 157 (675)
T ss_pred HHhhHHHHHhcc--CccceeeeHhHHHHHHHHHHhccCcc--cchHHHHHHHHHHhcCCccccc-cHHHHHHHHHHHhcc
Confidence 999999999999 89999999999999999876554332 2336788888888888777776 455666666544321
Q ss_pred -hh-HHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhh
Q 006201 253 -KL-APYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLL 330 (657)
Q Consensus 253 -~~-~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~ 330 (657)
.- .-.++.+++.+-..+-..++..|...++ |..+-... |..+++ .+++.+++-+++.+.
T Consensus 158 e~~~tFsL~~~ipLL~eriy~~n~~tR~flv~-Wl~~Lds~-----------------P~~~m~-~yl~~~ldGLf~~Ls 218 (675)
T KOG0212|consen 158 ESASTFSLPEFIPLLRERIYVINPMTRQFLVS-WLYVLDSV-----------------PDLEMI-SYLPSLLDGLFNMLS 218 (675)
T ss_pred ccccccCHHHHHHHHHHHHhcCCchHHHHHHH-HHHHHhcC-----------------CcHHHH-hcchHHHHHHHHHhc
Confidence 11 2356788888877777778888877775 44444432 222333 567888889988886
Q ss_pred hhcCccccCCCcchHhhhHHHHHHHHHhhc---CCC-chhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHH
Q 006201 331 KQEEDQDQDEGAWNIAMAGGTCLGLVARTV---GDD-IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPL 406 (657)
Q Consensus 331 ~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~---~~~-~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~ 406 (657)
+ ..-.+|..+..+++.+.... |.. -.+.+++.+...+.+++...+..|+.++..+..-. +..+-++
T Consensus 219 D---------~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~-g~~~l~~ 288 (675)
T KOG0212|consen 219 D---------SSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIP-GRDLLLY 288 (675)
T ss_pred C---------CcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCC-Ccchhhh
Confidence 3 22368888888888877655 222 25567777777888899999999999999988764 5777889
Q ss_pred HHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHH
Q 006201 407 VNIALNFMLTALMQDPNN-HVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFL 484 (657)
Q Consensus 407 ~~~i~~~l~~~l~~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l 484 (657)
+..++..+++++ .|..+ .++..+...-+.+...+..+. ....--+..+++.+.+.+.+ ....|..+...+..+
T Consensus 289 ~s~il~~iLpc~-s~~e~~~i~~~a~~~n~~l~~l~s~~~----~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l 363 (675)
T KOG0212|consen 289 LSGILTAILPCL-SDTEEMSIKEYAQMVNGLLLKLVSSER----LKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILL 363 (675)
T ss_pred hhhhhhhcccCC-CCCccccHHHHHHHHHHHHHHHHhhhh----hccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 999999999999 66555 578777766666666554211 01112345899999999886 578899999999988
Q ss_pred HhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Q 006201 485 AQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELH 558 (657)
Q Consensus 485 ~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~ 558 (657)
-... +..+.-+.+++.+.|++.+.+.+ ..+...+++.++.++..... +.+.+++..+++.+.
T Consensus 364 ~~~~------p~ql~~h~~~if~tLL~tLsd~s---d~vvl~~L~lla~i~~s~~~---~~~~~fl~sLL~~f~ 425 (675)
T KOG0212|consen 364 YHKA------PGQLLVHNDSIFLTLLKTLSDRS---DEVVLLALSLLASICSSSNS---PNLRKFLLSLLEMFK 425 (675)
T ss_pred HhhC------cchhhhhccHHHHHHHHhhcCch---hHHHHHHHHHHHHHhcCccc---ccHHHHHHHHHHHHh
Confidence 8764 45677899999999999998876 34444566666666655443 233444444544443
No 35
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=1.5e-12 Score=129.15 Aligned_cols=362 Identities=15% Similarity=0.206 Sum_probs=243.2
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcC
Q 006201 133 IGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFS 212 (657)
Q Consensus 133 ~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~ 212 (657)
.+.+.+.+.+.++..+..+...+..+...-....+.......++|.+++++.. +.++.++..|..+|.++..-.++...
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~-~~~~~lq~eAAWaLTnIAsgtse~T~ 146 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSR-DDNPTLQFEAAWALTNIASGTSEQTK 146 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHcc-CCChhHHHHHHHHHHHHhcCchhhcc
Confidence 56667777777877777777777776554321112123345789999999975 67789999999999998865433221
Q ss_pred ChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHH--HHHHHHHHHHhcCCh-HHHHHHHHHHHHHhH
Q 006201 213 NDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ--DIFNITAKAVREDEE-PVALQAIEFWSSVCD 289 (657)
Q Consensus 213 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~-~v~~~a~~~~~~l~~ 289 (657)
.. .....++.+..++.+++.+++..++++|+.++...+.+ ..++- .+++.++..+...+. .....+...++.+|+
T Consensus 147 ~v-v~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~-Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcr 224 (514)
T KOG0166|consen 147 VV-VDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDC-RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCR 224 (514)
T ss_pred cc-ccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHH-HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHc
Confidence 10 01234666788889999999999999999999877653 34332 466666666665554 567778888889987
Q ss_pred HHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCc----h
Q 006201 290 EEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDI----V 365 (657)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~----~ 365 (657)
..- |.+.+ ..+..++|.+...+...| -.+..-|.+++..++....+.+ -
T Consensus 225 gk~----------------P~P~~--~~v~~iLp~L~~ll~~~D---------~~Vl~Da~WAlsyLsdg~ne~iq~vi~ 277 (514)
T KOG0166|consen 225 GKN----------------PSPPF--DVVAPILPALLRLLHSTD---------EEVLTDACWALSYLTDGSNEKIQMVID 277 (514)
T ss_pred CCC----------------CCCcH--HHHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 520 11121 123456777776665322 1455567777777776543211 1
Q ss_pred hchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccC
Q 006201 366 PLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGS 444 (657)
Q Consensus 366 ~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~ 444 (657)
.-+.|.+...+.+++..++-.|++++|.|+.|.+ ......+ ...+|.+...+.+++...+|..|+|++++++..-.
T Consensus 278 ~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d-~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~-- 354 (514)
T KOG0166|consen 278 AGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSD-EQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQ-- 354 (514)
T ss_pred ccchHHHHHHHcCCCcccccHHHhhccceeeccH-HHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCH--
Confidence 2345556667778888899999999999998842 2222222 34677787877337777899999999999988432
Q ss_pred cCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhH--HHHHHHHHHhhccccchhh
Q 006201 445 TLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFF--QEIVQALLTVTHREDAGES 521 (657)
Q Consensus 445 ~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~--~~i~~~L~~~l~~~~~~~~ 521 (657)
.....-.-..++|.|+..|+. +-++|..|+||+.+++..-. ..-..|+ ..+++.++.++.-.+ .
T Consensus 355 ----~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~------~~qi~yLv~~giI~plcdlL~~~D---~ 421 (514)
T KOG0166|consen 355 ----EQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT------PEQIKYLVEQGIIKPLCDLLTCPD---V 421 (514)
T ss_pred ----HHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC------HHHHHHHHHcCCchhhhhcccCCC---h
Confidence 112333446789999999985 68899999999999886421 1222333 357888888885554 4
Q ss_pred hHHHHHHHHHHHHHHhccc
Q 006201 522 RLRTAAYETLNEVVRCSTD 540 (657)
Q Consensus 522 ~~~~~~~~al~~l~~~~~~ 540 (657)
++-..++++++.+.+....
T Consensus 422 ~ii~v~Ld~l~nil~~~e~ 440 (514)
T KOG0166|consen 422 KIILVALDGLENILKVGEA 440 (514)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455789999998887654
No 36
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=3.5e-11 Score=130.33 Aligned_cols=500 Identities=13% Similarity=0.163 Sum_probs=324.0
Q ss_pred cHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCCh--HHHHHHHHHHHHhcCCCChHHHHHHHH
Q 006201 37 GFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDS--SVKAQIKSFILKTLSSPAHDARSTASQ 114 (657)
Q Consensus 37 ~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~--~~~~~i~~~ll~~l~~~~~~vr~~aa~ 114 (657)
.++..++.-+.. +.+++.|+.+.+-|-.++.+... .++ -...+|...+...|.+.++.++-.|+.
T Consensus 817 ~~~~~~l~~~~~-s~nph~R~A~~VWLLs~vq~l~~------------~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsr 883 (1702)
T KOG0915|consen 817 TIILKLLDTLLT-SPNPHERQAGCVWLLSLVQYLGQ------------QPEVVLMLKEIQEAFSHLLSDNDEFSQDVASR 883 (1702)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhcc------------CchhhhccHHHHHHHHHHhcccHHHHHHHHhc
Confidence 344444444443 56899999998777666664321 111 122345567777888889999999999
Q ss_pred HHHHHHhhhcCCCCCchHHHHHHHhhcCCChh---------H-HHH---------HHHHHHHHhhhccccccchhhHhHH
Q 006201 115 VVAKVAGIELPHKQWPELIGALLSNIHQLPPH---------T-KQA---------TLETLGYICEEVSSDAVEQDHVNKI 175 (657)
Q Consensus 115 ~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~---------~-~~~---------~l~~l~~i~~~~~~~~l~~~~~~~l 175 (657)
-++.+-..- ..+.-.+++..|...+..+... . .++ .+.....+|.-. .+ -..+++
T Consensus 884 GlglVYelg-d~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LA-Sd----l~qPdL 957 (1702)
T KOG0915|consen 884 GLGLVYELG-DSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLA-SD----LGQPDL 957 (1702)
T ss_pred CceEEEecC-CchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHH-hh----cCChHH
Confidence 887755432 1134567888887776543211 0 000 111111222111 00 012345
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhH
Q 006201 176 LTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLA 255 (657)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 255 (657)
+=.|++..+. ...+.-|+.|.=.|+.+..-..+... .+...+++-+.++--|++..++.+....|..++......+.
T Consensus 958 VYKFM~LAnh-~A~wnSk~GaAfGf~~i~~~a~~kl~--p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd 1034 (1702)
T KOG0915|consen 958 VYKFMQLANH-NATWNSKKGAAFGFGAIAKQAGEKLE--PYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVD 1034 (1702)
T ss_pred HHHHHHHhhh-hchhhcccchhhchHHHHHHHHHhhh--hHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHH
Confidence 5567777765 55667777776667776653322221 23356777888888899999999999999999988777788
Q ss_pred HhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCc
Q 006201 256 PYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEED 335 (657)
Q Consensus 256 ~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d 335 (657)
.|+.++++-++..+.+....+|..++-.+..+.... ....+...++++...++..|-+..
T Consensus 1035 ~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~------------------~~~~~~e~lpelw~~~fRvmDDIK-- 1094 (1702)
T KOG0915|consen 1035 EYLNEILDELLVNLTSKEWRVREASCLALADLLQGR------------------PFDQVKEKLPELWEAAFRVMDDIK-- 1094 (1702)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCC------------------ChHHHHHHHHHHHHHHHHHHHHHH--
Confidence 899999999998999999999999987776666531 112345556667777776553211
Q ss_pred cccCCCcchHhhhHHHHHHHHHhhc-----------CCCchhchHHHHHh-hhcCcchhhHHHHHHHHHHhhcCCCCCcc
Q 006201 336 QDQDEGAWNIAMAGGTCLGLVARTV-----------GDDIVPLVMPFVEE-NITKQEWRQREAATYAFGSILEGPSPEKL 403 (657)
Q Consensus 336 ~~~d~~~~~~r~~a~~~L~~l~~~~-----------~~~~~~~l~~~l~~-~l~~~~~~~r~aal~~l~~i~~~~~~~~~ 403 (657)
-++|.+|..+.+.+++.+ |.+++..++|++.+ .+.+.-..+|..++..+..++++. ...+
T Consensus 1095 -------EsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kss-g~~l 1166 (1702)
T KOG0915|consen 1095 -------ESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSS-GKEL 1166 (1702)
T ss_pred -------HHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhc-hhhh
Confidence 278888877777776643 23567788888764 444555789999999999999986 5889
Q ss_pred hHHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHhhhccCcC------CC--------ccCCcccHHHHHHHHHHHcc
Q 006201 404 VPLVNIALNFMLTALMQDPNN-HVKDTTAWTLGRMFEFLHGSTL------ET--------PIINQGNCQQIISVLLQSMK 468 (657)
Q Consensus 404 ~~~~~~i~~~l~~~l~~d~~~-~vr~~a~~~l~~l~~~~~~~~~------~~--------~~~~~~~~~~il~~l~~~l~ 468 (657)
+|+++.++|.++..+ ..-.+ .+-+.++.+.+.=.+.+...-. +. +......+.+++|.+.+.++
T Consensus 1167 kP~~~~LIp~ll~~~-s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R 1245 (1702)
T KOG0915|consen 1167 KPHFPKLIPLLLNAY-SELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVR 1245 (1702)
T ss_pred cchhhHHHHHHHHHc-cccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 999999999999988 54333 3344444443322222110000 00 12334556778888888777
Q ss_pred c--chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccc-cHHH
Q 006201 469 D--VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDE-TAPM 545 (657)
Q Consensus 469 d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~-~~~~ 545 (657)
. .-..+..++..+..++..+ +.++.||...++..++..+.+.+ +.+|...-.|+|.+++...++ +.++
T Consensus 1246 ~sVgl~Tkvg~A~fI~~L~~r~------~~emtP~sgKll~al~~g~~dRN---esv~kafAsAmG~L~k~Ss~dq~qKL 1316 (1702)
T KOG0915|consen 1246 GSVGLGTKVGCASFISLLVQRL------GSEMTPYSGKLLRALFPGAKDRN---ESVRKAFASAMGYLAKFSSPDQMQKL 1316 (1702)
T ss_pred ccCCCCcchhHHHHHHHHHHHh------ccccCcchhHHHHHHhhcccccc---HHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 4 2445677788888888876 46799999999999999998854 678888889999999998863 5555
Q ss_pred HHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHcc
Q 006201 546 VMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAI 619 (657)
Q Consensus 546 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~ 619 (657)
+..++-.++.. .+. .+...+.++..+++..... +..|.+.++|.+.-...+
T Consensus 1317 ie~~l~~~l~k-----------~es------~~siscatis~Ian~s~e~------Lkn~asaILPLiFLa~~e 1367 (1702)
T KOG0915|consen 1317 IETLLADLLGK-----------DES------LKSISCATISNIANYSQEM------LKNYASAILPLIFLAMHE 1367 (1702)
T ss_pred HHHHHHHHhcc-----------CCC------ccchhHHHHHHHHHhhHHH------HHhhHHHHHHHHHHHHhH
Confidence 55433333221 111 1234666777777766665 888888888887655443
No 37
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.48 E-value=5.3e-11 Score=117.35 Aligned_cols=389 Identities=14% Similarity=0.185 Sum_probs=264.5
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCC-----chHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccc
Q 006201 92 QIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQW-----PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDA 166 (657)
Q Consensus 92 ~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~-----~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~ 166 (657)
.+...+++.+.++.+..|+..|.+.+.+.... +.... .-++..++..++..+... ...+.|++.+.... +.
T Consensus 521 ~v~~kil~~~~De~ep~r~m~a~~vsri~~~l-g~~~~dErleerl~d~il~Afqeq~~t~-~~il~~f~tv~vsl--~~ 596 (975)
T COG5181 521 RVSRKILEYYSDEPEPYRKMNAGLVSRIFSRL-GRLGFDERLEERLYDSILNAFQEQDTTV-GLILPCFSTVLVSL--EF 596 (975)
T ss_pred HHHHHHHhhccCCcchhhhhhhHHHHHHHHhc-ccccccHHHHHHHHHHHHHHHHhccccc-cEEEecccceeeeh--hh
Confidence 44567788888888888998888888877764 21122 234455555554332211 12344555544433 22
Q ss_pred cchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHH
Q 006201 167 VEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAI 246 (657)
Q Consensus 167 l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l 246 (657)
..++++..++..++..|+ ...+.+|..|.+..++++..++.--+ ......+=.++.+.+..+.+++...++.+++.+
T Consensus 597 r~kp~l~~ivStiL~~L~--~k~p~vR~~aadl~~sl~~vlk~c~e-~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I 673 (975)
T COG5181 597 RGKPHLSMIVSTILKLLR--SKPPDVRIRAADLMGSLAKVLKACGE-TKELAKLGNILYENLGEDYPEVLGSILKAICSI 673 (975)
T ss_pred ccCcchHHHHHHHHHHhc--CCCccHHHHHHHHHHHHHHHHHhcch-HHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHH
Confidence 236889999999999999 68899999999999998876542111 111133344566777788899999999988888
Q ss_pred HHHHH-HhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHH
Q 006201 247 SSTYY-EKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLL 325 (657)
Q Consensus 247 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 325 (657)
.+... +.+.|-+.+++|.+...+.+.+..+....+.+..++|...++.. ..+...+ |.--+
T Consensus 674 ~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi-------------~~rEWMR-----IcfeL 735 (975)
T COG5181 674 YSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYI-------------GVREWMR-----ICFEL 735 (975)
T ss_pred hhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccC-------------CHHHHHH-----HHHHH
Confidence 76543 34556778888888888888888899999999999997643311 1222222 22222
Q ss_pred HHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchH
Q 006201 326 LETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVP 405 (657)
Q Consensus 326 ~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~ 405 (657)
+..+.... -.+|+.|..+++-++...|.. .++..+.+++..++-+.|-+...+++.+++.|++
T Consensus 736 vd~Lks~n---------KeiRR~A~~tfG~Is~aiGPq---dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp----- 798 (975)
T COG5181 736 VDSLKSWN---------KEIRRNATETFGCISRAIGPQ---DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP----- 798 (975)
T ss_pred HHHHHHhh---------HHHHHhhhhhhhhHHhhcCHH---HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-----
Confidence 33232211 268999999999999988742 2344555677777778888899999999998863
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHH
Q 006201 406 LVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFL 484 (657)
Q Consensus 406 ~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l 484 (657)
-.++|.++... ..|+..|+...++++.-+.+.+++ ....|...+.|.|..+|-| ++.-|..|...+..+
T Consensus 799 --fsVlP~lm~dY-~TPe~nVQnGvLkam~fmFeyig~-------~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl 868 (975)
T COG5181 799 --FSVLPTLMSDY-ETPEANVQNGVLKAMCFMFEYIGQ-------ASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHL 868 (975)
T ss_pred --hhhHHHHHhcc-cCchhHHHHhHHHHHHHHHHHHHH-------HHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHH
Confidence 24578888888 889999999999999999998864 5578999999999999998 688899999999999
Q ss_pred HhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhccc
Q 006201 485 AQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD 540 (657)
Q Consensus 485 ~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~ 540 (657)
.-++.. ..-....-.++..|-.-+-.+. ..+.....+++..+...+|.
T Consensus 869 ~Lnc~g-----tg~eda~IHLlNllwpNIle~s---Phvi~~~~Eg~e~~~~~lg~ 916 (975)
T COG5181 869 VLNCPG-----TGDEDAAIHLLNLLWPNILEPS---PHVIQSFDEGMESFATVLGS 916 (975)
T ss_pred hcCCCC-----cccHHHHHHHHHHhhhhccCCC---cHHHHHHHHHHHHHHHHhcc
Confidence 877532 2222222233333332222222 34444566778888887774
No 38
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.44 E-value=1.6e-09 Score=114.57 Aligned_cols=450 Identities=14% Similarity=0.122 Sum_probs=287.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCC
Q 006201 107 DARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNAS 186 (657)
Q Consensus 107 ~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~ 186 (657)
.-|..+|..++..+....+...-.++.+...+..++..+.+|..+..-++.++... +. ......+.+.+.+..+
T Consensus 213 ~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~-~~---~~~~s~v~~~~~~L~~-- 286 (759)
T KOG0211|consen 213 QSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVL-ES---EIVKSEVLPTLIQLLR-- 286 (759)
T ss_pred hcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHH-HH---HHHHhhccHHHhhhhh--
Confidence 34555666655554443211233566777777778888888888888888877766 32 2233456667777777
Q ss_pred CCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHH
Q 006201 187 ESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITA 266 (657)
Q Consensus 187 ~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~ 266 (657)
|....||.+|.+++.++..++.... ...+.+.+.++...++.++.++..+.+....+....+. ...-.+.++..+
T Consensus 287 DdqdsVr~~a~~~~~~l~~l~~~~~---d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~ 361 (759)
T KOG0211|consen 287 DDQDSVREAAVESLVSLLDLLDDDD---DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVS 361 (759)
T ss_pred cchhhHHHHHHHHHHHHHHhcCCch---hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHH
Confidence 7778999999999999887764321 23467888888888889999988888888777665543 112234566666
Q ss_pred HHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHh
Q 006201 267 KAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIA 346 (657)
Q Consensus 267 ~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r 346 (657)
..+++...+.|.....-...++... +...+..-..+.++|.+.....+ ....+|
T Consensus 362 ~l~~~~~~e~r~a~a~~~~~l~~~l-----------------~~~~~~~i~~~~ilp~~~~lv~d---------~~~~vr 415 (759)
T KOG0211|consen 362 NLLKDEEWEVRYAIAKKVQKLACYL-----------------NASCYPNIPDSSILPEVQVLVLD---------NALHVR 415 (759)
T ss_pred HHhcchhhhhhHHhhcchHHHhhhc-----------------CcccccccchhhhhHHHHHHHhc---------ccchHH
Confidence 6777766666654443222222211 00011222223345554433321 123556
Q ss_pred hhHHHHHHHHHhhcC-CCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHH
Q 006201 347 MAGGTCLGLVARTVG-DDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNH 425 (657)
Q Consensus 347 ~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~ 425 (657)
.+.+....-+...+| +..++.+.|....++++....+|......+..+-...............+|.+...- .|.+.+
T Consensus 416 ~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~-~d~~wR 494 (759)
T KOG0211|consen 416 SALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELA-EDLLWR 494 (759)
T ss_pred HHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhc-cchhHH
Confidence 554444444444444 456778888888888888889998888766554433223344555677788887777 888999
Q ss_pred HHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHH-Hccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHH
Q 006201 426 VKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQ-SMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQ 503 (657)
Q Consensus 426 vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~-~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~ 503 (657)
+|.+..+.+-.++.... ..++..-+..+.. -+.| ...+|.+|+..+..++..++ -..+..
T Consensus 495 vr~ail~~ip~la~q~~----------~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G--------~~w~~~ 556 (759)
T KOG0211|consen 495 VRLAILEYIPQLALQLG----------VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG--------SEWARL 556 (759)
T ss_pred HHHHHHHHHHHHHHhhh----------hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC--------cchhHH
Confidence 99999999888877654 2333333333333 3445 36899999999999999865 245677
Q ss_pred HHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHH
Q 006201 504 EIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCG 583 (657)
Q Consensus 504 ~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (657)
.+++.++....+.+ -..|...+.++..++...|..+ +...++|.+...... . ...+|..++.
T Consensus 557 ~~i~k~L~~~~q~~---y~~R~t~l~si~~la~v~g~ei--~~~~Llp~~~~l~~D-----------~--vanVR~nvak 618 (759)
T KOG0211|consen 557 EEIPKLLAMDLQDN---YLVRMTTLFSIHELAEVLGQEI--TCEDLLPVFLDLVKD-----------P--VANVRINVAK 618 (759)
T ss_pred HhhHHHHHHhcCcc---cchhhHHHHHHHHHHHHhccHH--HHHHHhHHHHHhccC-----------C--chhhhhhHHH
Confidence 88888888887653 5678889999999999999742 345566666553332 1 2357878888
Q ss_pred HHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHcccCCcchhhHHHHHHHHHHH
Q 006201 584 CLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYA 638 (657)
Q Consensus 584 ~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~~~~l~~l~~~ 638 (657)
.+..+...+.... .-..+.+.+....++++.++|--|..+++.+...
T Consensus 619 ~L~~i~~~L~~~~--------~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 619 HLPKILKLLDESV--------RDEEVLPLLETLSSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred HHHHHHhhcchHH--------HHHHHHHHHHHhccCcccchhHHHHHHHHHHHHH
Confidence 8888888776552 2223333333344466777887777777777654
No 39
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.43 E-value=3.6e-11 Score=134.83 Aligned_cols=272 Identities=19% Similarity=0.203 Sum_probs=192.6
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhH
Q 006201 95 SFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNK 174 (657)
Q Consensus 95 ~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~ 174 (657)
+.|++.|.++++.||..++..|+.+. + ++.++.|...+.++++.+|..++..|..+.+.. +.
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~----~----~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~-~~--------- 685 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETT----P----PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL-PP--------- 685 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhc----c----hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-Cc---------
Confidence 45677788899999999999998764 1 467888899999999999999999988875533 11
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhh
Q 006201 175 ILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKL 254 (657)
Q Consensus 175 l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 254 (657)
.+.+.+.+. ++++.||..|+++|..+-. .. ...+...+.++++.+|..++..|..+-. .
T Consensus 686 -~~~L~~~L~--~~d~~VR~~A~~aL~~~~~------~~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~~--~--- 744 (897)
T PRK13800 686 -APALRDHLG--SPDPVVRAAALDVLRALRA------GD-------AALFAAALGDPDHRVRIEAVRALVSVDD--V--- 744 (897)
T ss_pred -hHHHHHHhc--CCCHHHHHHHHHHHHhhcc------CC-------HHHHHHHhcCCCHHHHHHHHHHHhcccC--c---
Confidence 123445556 6788999999998887421 00 1234556788999999999999987521 0
Q ss_pred HHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcC
Q 006201 255 APYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEE 334 (657)
Q Consensus 255 ~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~ 334 (657)
+.+...+.|.++.+|..+.+.+..+..... ..++.+...+.
T Consensus 745 --------~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------------------------~~~~~L~~ll~---- 785 (897)
T PRK13800 745 --------ESVAGAATDENREVRIAVAKGLATLGAGGA---------------------------PAGDAVRALTG---- 785 (897)
T ss_pred --------HHHHHHhcCCCHHHHHHHHHHHHHhccccc---------------------------hhHHHHHHHhc----
Confidence 123456788899999998887766654210 01233333332
Q ss_pred ccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHH
Q 006201 335 DQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFM 414 (657)
Q Consensus 335 d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l 414 (657)
| .++.+|..|..+|..+... +.+.+.+...+.|++|.+|.+|+.+|+.+... ..++.+
T Consensus 786 D-----~d~~VR~aA~~aLg~~g~~------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-----------~a~~~L 843 (897)
T PRK13800 786 D-----PDPLVRAAALAALAELGCP------PDDVAAATAALRASAWQVRQGAARALAGAAAD-----------VAVPAL 843 (897)
T ss_pred C-----CCHHHHHHHHHHHHhcCCc------chhHHHHHHHhcCCChHHHHHHHHHHHhcccc-----------chHHHH
Confidence 1 1268899888888776431 22334566778899999999999999987531 124778
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHH
Q 006201 415 LTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYF 483 (657)
Q Consensus 415 ~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~ 483 (657)
...+ +|+++.||.+|.++|+++. .. +...+.|...++| ++.||..|..+|..
T Consensus 844 ~~~L-~D~~~~VR~~A~~aL~~~~--~~--------------~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 844 VEAL-TDPHLDVRKAAVLALTRWP--GD--------------PAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHh-cCCCHHHHHHHHHHHhccC--CC--------------HHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 8889 9999999999999999861 11 3456677788887 68999999999863
No 40
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.43 E-value=6.5e-10 Score=117.50 Aligned_cols=468 Identities=16% Similarity=0.151 Sum_probs=297.5
Q ss_pred ChHHHHHHHHHHHHHHhcCc-c---cHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCC-hHHH
Q 006201 16 DGTVRKQAEESLKQYQEQNL-P---GFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLD-SSVK 90 (657)
Q Consensus 16 d~~~r~~A~~~L~~~~~~~~-~---~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~-~~~~ 90 (657)
.+.+|+++.+.+......-+ + .....++..+.. ...-..|..|..+++.. +..++ +..+
T Consensus 172 et~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~-~d~~~sr~sacglf~~~---------------~~~~~~~~vk 235 (759)
T KOG0211|consen 172 ETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLAT-GDWFQSRLSACGLFGKL---------------YVSLPDDAVK 235 (759)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccc-hhhhhcchhhhhhhHHh---------------ccCCChHHHH
Confidence 35678888888876544311 1 223333333332 12233455554555442 23344 5677
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchh
Q 006201 91 AQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQD 170 (657)
Q Consensus 91 ~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~ 170 (657)
..+++..-+.-.+..+.+|..+|.-++.+++.......+..++|.+.+...+....+|+.|...+..+.+.+... . +
T Consensus 236 ~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~-~--d 312 (759)
T KOG0211|consen 236 RELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDD-D--D 312 (759)
T ss_pred HHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCc-h--h
Confidence 788877777777888999999999999999987544578899999999999999999999999999998887322 1 4
Q ss_pred hHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHH
Q 006201 171 HVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTY 250 (657)
Q Consensus 171 ~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 250 (657)
....+.+.+++... |.++.+|....+.+..+...+... ..+....+.......+..++.|.++..-...+....
T Consensus 313 ~~~~~~~~l~~~~~--d~~~~v~~~~~~~~~~L~~~~~~~----~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l 386 (759)
T KOG0211|consen 313 VVKSLTESLVQAVE--DGSWRVSYMVADKFSELSSAVGPS----ATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYL 386 (759)
T ss_pred hhhhhhHHHHHHhc--ChhHHHHHHHhhhhhhHHHHhccc----cCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhc
Confidence 55677888888888 899999998888887776544321 112233344444555666777777666655554432
Q ss_pred H--HhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCC-Cch-hhHHHhhhhhHHHHHH
Q 006201 251 Y--EKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSD-IPC-FYFIKHALPVLVPLLL 326 (657)
Q Consensus 251 ~--~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~l~~l~~~l~ 326 (657)
. .+..-....+++.+.....+.+..+|.....+...+....+ + ...-+. .+. ....+...+.+.-.+.
T Consensus 387 ~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~----k----~~ti~~llp~~~~~l~de~~~V~lnli 458 (759)
T KOG0211|consen 387 NASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP----K----ERTISELLPLLIGNLKDEDPIVRLNLI 458 (759)
T ss_pred CcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC----c----CcCccccChhhhhhcchhhHHHHHhhH
Confidence 1 11111223456666666666676676655544333321100 0 000000 000 0001111111111111
Q ss_pred HHhhhhcCc-----------------cc-cCCCcchHhhhHHHHHHHHHhhcCCCc-hhchHHHHHhhhcCcchhhHHHH
Q 006201 327 ETLLKQEED-----------------QD-QDEGAWNIAMAGGTCLGLVARTVGDDI-VPLVMPFVEENITKQEWRQREAA 387 (657)
Q Consensus 327 ~~l~~~~~d-----------------~~-~d~~~~~~r~~a~~~L~~l~~~~~~~~-~~~l~~~l~~~l~~~~~~~r~aa 387 (657)
..+...+.. .+ .++..|++|.+..+.+-.++...|..+ -+.+.+.+..++.|....+|++|
T Consensus 459 ~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~a 538 (759)
T KOG0211|consen 459 DKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAA 538 (759)
T ss_pred HHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHH
Confidence 111110000 00 123369999998888888888877444 34566666667777678899999
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHc
Q 006201 388 TYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSM 467 (657)
Q Consensus 388 l~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l 467 (657)
...+..++...+ .......+++.++... .+++..+|.+.+.++..+++.+++ .-+...++|.+....
T Consensus 539 a~~l~~l~~~~G---~~w~~~~~i~k~L~~~-~q~~y~~R~t~l~si~~la~v~g~---------ei~~~~Llp~~~~l~ 605 (759)
T KOG0211|consen 539 ARNLPALVETFG---SEWARLEEIPKLLAMD-LQDNYLVRMTTLFSIHELAEVLGQ---------EITCEDLLPVFLDLV 605 (759)
T ss_pred HHHhHHHHHHhC---cchhHHHhhHHHHHHh-cCcccchhhHHHHHHHHHHHHhcc---------HHHHHHHhHHHHHhc
Confidence 999999887654 2334566778888777 777899999999999999998863 556788899999888
Q ss_pred cc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhccc
Q 006201 468 KD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD 540 (657)
Q Consensus 468 ~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~ 540 (657)
.| .+.||.+++..+..+...+. .+-.+..+..++..+...+ +.++|..+..+++.+......
T Consensus 606 ~D~vanVR~nvak~L~~i~~~L~---------~~~~~~~v~pll~~L~~d~--~~dvr~~a~~a~~~i~l~~~~ 668 (759)
T KOG0211|consen 606 KDPVANVRINVAKHLPKILKLLD---------ESVRDEEVLPLLETLSSDQ--ELDVRYRAILAFGSIELSRLE 668 (759)
T ss_pred cCCchhhhhhHHHHHHHHHhhcc---------hHHHHHHHHHHHHHhccCc--ccchhHHHHHHHHHHHHHHHh
Confidence 87 68999999999999988753 2455555555555554433 578888888888888776654
No 41
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=99.42 E-value=6e-11 Score=117.08 Aligned_cols=222 Identities=17% Similarity=0.248 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCC
Q 006201 233 VKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVRED-----EEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSD 307 (657)
Q Consensus 233 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~ 307 (657)
++++..+|+++...++++.+.+.+|++.++..+|+.+... .+.+...++.|+.++++.... ..
T Consensus 110 ~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~-~~----------- 177 (370)
T PF08506_consen 110 EKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHH-KN----------- 177 (370)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHH-HT-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhH-HH-----------
Confidence 5678889999999999999999999999999999887542 345667889999887764311 00
Q ss_pred CchhhHHHhhhhhHHH-HHHHHhhhhcCc-------cc-------cCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHH
Q 006201 308 IPCFYFIKHALPVLVP-LLLETLLKQEED-------QD-------QDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFV 372 (657)
Q Consensus 308 ~~~~~~~~~~l~~l~~-~l~~~l~~~~~d-------~~-------~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l 372 (657)
.+ -.++.++.|+. +++..|...++| +. |..|..+.|++|.+.+..+++..++.+.+.+..++
T Consensus 178 --lf-~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i 254 (370)
T PF08506_consen 178 --LF-ENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYI 254 (370)
T ss_dssp --TT--SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --Hh-CCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 00 01344444443 334444433332 21 22345689999999999999999888888888877
Q ss_pred Hhhhc------CcchhhHHHHHHHHHHhhcCCCC-----C------cchHHHH-HHHHHHHHHhcCCCcHHHHHHHHHHH
Q 006201 373 EENIT------KQEWRQREAATYAFGSILEGPSP-----E------KLVPLVN-IALNFMLTALMQDPNNHVKDTTAWTL 434 (657)
Q Consensus 373 ~~~l~------~~~~~~r~aal~~l~~i~~~~~~-----~------~~~~~~~-~i~~~l~~~l~~d~~~~vr~~a~~~l 434 (657)
+..++ +.+|+.+++|+..+++++..... . .+..++. .++|.+. .- .+.+|.+|..|++.+
T Consensus 255 ~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~-~~~~piLka~aik~~ 332 (370)
T PF08506_consen 255 QQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PD-VNSHPILKADAIKFL 332 (370)
T ss_dssp HHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--S-S-S-HHHHHHHHHHH
T ss_pred HHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-cc-CCCCcchHHHHHHHH
Confidence 77665 35799999999999998864311 0 1233333 2344443 22 467899999999999
Q ss_pred HHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHH
Q 006201 435 GRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGAL 481 (657)
Q Consensus 435 ~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al 481 (657)
..|...++ ++.+..++|.++..|++ +..|+..|+.++
T Consensus 333 ~~Fr~~l~----------~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 333 YTFRNQLP----------KEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHGGGS-----------HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHhhCC----------HHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 98888764 67889999999999996 677888888765
No 42
>PRK09687 putative lyase; Provisional
Probab=99.39 E-value=7.8e-11 Score=112.42 Aligned_cols=250 Identities=18% Similarity=0.206 Sum_probs=171.2
Q ss_pred HHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhH
Q 006201 179 VVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYI 258 (657)
Q Consensus 179 l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 258 (657)
+...+. |.+..||..++.+|..+- . ..++..+..+++++++.+|..++..|+.+...... .
T Consensus 28 L~~~L~--d~d~~vR~~A~~aL~~~~--------~----~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~ 88 (280)
T PRK09687 28 LFRLLD--DHNSLKRISSIRVLQLRG--------G----QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----Q 88 (280)
T ss_pred HHHHHh--CCCHHHHHHHHHHHHhcC--------c----chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----h
Confidence 344555 889999999999987631 1 34566666677889999999999999997532110 1
Q ss_pred HHHHHHHHHH-HhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccc
Q 006201 259 QDIFNITAKA-VREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQD 337 (657)
Q Consensus 259 ~~l~~~~~~~-~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~ 337 (657)
...++.+... .++.++.||..++..++.++.... .. .+.++..+...+.
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~-------------------~~----~~~a~~~l~~~~~------- 138 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRCKKNP-------------------LY----SPKIVEQSQITAF------- 138 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc-------------------cc----chHHHHHHHHHhh-------
Confidence 2344444444 577889999999988877764220 00 1112222222222
Q ss_pred cCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHH
Q 006201 338 QDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTA 417 (657)
Q Consensus 338 ~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~ 417 (657)
+.+|.+|..+..+|+.+. -+..++.|...+.|++|.+|..|+.+||.+..+ + +.+.+.++..
T Consensus 139 --D~~~~VR~~a~~aLg~~~-------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~-~--------~~~~~~L~~~ 200 (280)
T PRK09687 139 --DKSTNVRFAVAFALSVIN-------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYD-N--------PDIREAFVAM 200 (280)
T ss_pred --CCCHHHHHHHHHHHhccC-------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC-C--------HHHHHHHHHH
Confidence 224899998888885443 234556666777889999999999999999332 1 3566888899
Q ss_pred hcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhccCCCCCCCC
Q 006201 418 LMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSP 497 (657)
Q Consensus 418 l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~ 497 (657)
+ +|+++.||..|.+.||++.. ..++|.|++.|++. .++..++.+++.+-.
T Consensus 201 L-~D~~~~VR~~A~~aLg~~~~-----------------~~av~~Li~~L~~~-~~~~~a~~ALg~ig~----------- 250 (280)
T PRK09687 201 L-QDKNEEIRIEAIIGLALRKD-----------------KRVLSVLIKELKKG-TVGDLIIEAAGELGD----------- 250 (280)
T ss_pred h-cCCChHHHHHHHHHHHccCC-----------------hhHHHHHHHHHcCC-chHHHHHHHHHhcCC-----------
Confidence 9 99999999999999987432 46788999998863 377788888876532
Q ss_pred CchhHHHHHHHHHHhhccccchhhhHHHHHHHHHH
Q 006201 498 LTPFFQEIVQALLTVTHREDAGESRLRTAAYETLN 532 (657)
Q Consensus 498 l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~ 532 (657)
+..++.|.+++.... +..++..+.++|.
T Consensus 251 -----~~a~p~L~~l~~~~~--d~~v~~~a~~a~~ 278 (280)
T PRK09687 251 -----KTLLPVLDTLLYKFD--DNEIITKAIDKLK 278 (280)
T ss_pred -----HhHHHHHHHHHhhCC--ChhHHHHHHHHHh
Confidence 145667777776443 4667777777765
No 43
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.39 E-value=1.5e-10 Score=129.96 Aligned_cols=274 Identities=19% Similarity=0.218 Sum_probs=194.9
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 006201 38 FLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVA 117 (657)
Q Consensus 38 ~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~ 117 (657)
-+..|...|.+ .++.+|..|+..|...-. ....+.|.+.|.++++.||..++.+|+
T Consensus 622 ~~~~L~~~L~D--~d~~VR~~Av~~L~~~~~----------------------~~~~~~L~~aL~D~d~~VR~~Aa~aL~ 677 (897)
T PRK13800 622 SVAELAPYLAD--PDPGVRRTAVAVLTETTP----------------------PGFGPALVAALGDGAAAVRRAAAEGLR 677 (897)
T ss_pred hHHHHHHHhcC--CCHHHHHHHHHHHhhhcc----------------------hhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44567777775 589999999999987321 224567778899999999999999998
Q ss_pred HHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHH
Q 006201 118 KVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAAT 197 (657)
Q Consensus 118 ~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al 197 (657)
.++... + . .+.+...++++++.+|..++..|..+-.. . ...+...+. |+++.||..|+
T Consensus 678 ~l~~~~-~-----~-~~~L~~~L~~~d~~VR~~A~~aL~~~~~~---~----------~~~l~~~L~--D~d~~VR~~Av 735 (897)
T PRK13800 678 ELVEVL-P-----P-APALRDHLGSPDPVVRAAALDVLRALRAG---D----------AALFAAALG--DPDHRVRIEAV 735 (897)
T ss_pred HHHhcc-C-----c-hHHHHHHhcCCCHHHHHHHHHHHHhhccC---C----------HHHHHHHhc--CCCHHHHHHHH
Confidence 886432 1 1 25677778889999999999988875311 0 123445667 89999999999
Q ss_pred HHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHH
Q 006201 198 RALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVA 277 (657)
Q Consensus 198 ~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~ 277 (657)
++|..+- . .+.+..++.++++++|..+...|..+....+ ..++.+...++|.++.+|
T Consensus 736 ~aL~~~~--------~-------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~d~~VR 792 (897)
T PRK13800 736 RALVSVD--------D-------VESVAGAATDENREVRIAVAKGLATLGAGGA--------PAGDAVRALTGDPDPLVR 792 (897)
T ss_pred HHHhccc--------C-------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc--------hhHHHHHHHhcCCCHHHH
Confidence 9988731 0 0224556788999999999999998754322 124445567788899999
Q ss_pred HHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHH
Q 006201 278 LQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVA 357 (657)
Q Consensus 278 ~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~ 357 (657)
..++..+..+.... .+.+.+...+. +++|.+|..|..+|..+.
T Consensus 793 ~aA~~aLg~~g~~~----------------------------~~~~~l~~aL~---------d~d~~VR~~Aa~aL~~l~ 835 (897)
T PRK13800 793 AAALAALAELGCPP----------------------------DDVAAATAALR---------ASAWQVRQGAARALAGAA 835 (897)
T ss_pred HHHHHHHHhcCCcc----------------------------hhHHHHHHHhc---------CCChHHHHHHHHHHHhcc
Confidence 99998776664311 01122333332 234899999999987654
Q ss_pred hhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 006201 358 RTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLG 435 (657)
Q Consensus 358 ~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~ 435 (657)
. . ..++.|...+.|++|.+|.+|+.+|+.+. +. +...+.+...+ +|+++.||..|..+|.
T Consensus 836 ~---~----~a~~~L~~~L~D~~~~VR~~A~~aL~~~~-~~---------~~a~~~L~~al-~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 836 A---D----VAVPALVEALTDPHLDVRKAAVLALTRWP-GD---------PAARDALTTAL-TDSDADVRAYARRALA 895 (897)
T ss_pred c---c----chHHHHHHHhcCCCHHHHHHHHHHHhccC-CC---------HHHHHHHHHHH-hCCCHHHHHHHHHHHh
Confidence 2 2 23355566778999999999999999972 11 23356777888 9999999999999885
No 44
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=4.8e-10 Score=111.68 Aligned_cols=387 Identities=12% Similarity=0.099 Sum_probs=261.2
Q ss_pred ChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHhhhcCC---C
Q 006201 52 PVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSS-PAHDARSTASQVVAKVAGIELPH---K 127 (657)
Q Consensus 52 ~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~-~~~~vr~~aa~~l~~i~~~~~~~---~ 127 (657)
+...+..|...+++...... . +.+..-.+..+.+.++++|.. .++.++..||-+|..||...... -
T Consensus 79 ~~~~q~~a~~~~rkllS~~~---------~-ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~v 148 (514)
T KOG0166|consen 79 DPQQQLTATQAFRKLLSKER---------N-PPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVV 148 (514)
T ss_pred CHHHHHHHHHHHHHHHccCC---------C-CCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccc
Confidence 56668888888888776421 1 446666677788889999975 45899999999999999976431 1
Q ss_pred CCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhH--hHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHh
Q 006201 128 QWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHV--NKILTAVVQGMNASESNNDVRLAATRALYNALG 205 (657)
Q Consensus 128 ~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~--~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 205 (657)
.-.+.+|.+++++.+++..+++.|..+|+.|+.+. +. + +.++ ..+++.++..+.. +....+.+.+..+|+++..
T Consensus 149 v~agavp~fi~Ll~s~~~~v~eQavWALgNIagds-~~-~-Rd~vl~~g~l~pLl~~l~~-~~~~~~lRn~tW~LsNlcr 224 (514)
T KOG0166|consen 149 VDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDS-PD-C-RDYVLSCGALDPLLRLLNK-SDKLSMLRNATWTLSNLCR 224 (514)
T ss_pred ccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCC-hH-H-HHHHHhhcchHHHHHHhcc-ccchHHHHHHHHHHHHHHc
Confidence 23678899999999999999999999999998765 22 2 2222 3345666666663 2223567778899999876
Q ss_pred hchhhcCCh-hhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHH-HHHHHHHHHHhcCChHHHHHHHHH
Q 006201 206 FAQANFSND-MERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEF 283 (657)
Q Consensus 206 ~~~~~~~~~-~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~ 283 (657)
.-. ...+ .....+++.+..++...|+++...+++++..+.....+.+.-.+. .+++.+...+.+.++.++..|++.
T Consensus 225 gk~--P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRa 302 (514)
T KOG0166|consen 225 GKN--PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRA 302 (514)
T ss_pred CCC--CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhh
Confidence 421 1111 223678999999999999999999999999998877776655554 678888888999888898889988
Q ss_pred HHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhh-hhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCC
Q 006201 284 WSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHA-LPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD 362 (657)
Q Consensus 284 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~ 362 (657)
++.++... + .....+ -...+|.+...+..... -.+|+.|.++++.|.....+
T Consensus 303 iGNIvtG~-d------------------~QTq~vi~~~~L~~l~~ll~~s~~--------~~ikkEAcW~iSNItAG~~~ 355 (514)
T KOG0166|consen 303 IGNIVTGS-D------------------EQTQVVINSGALPVLSNLLSSSPK--------ESIKKEACWTISNITAGNQE 355 (514)
T ss_pred ccceeecc-H------------------HHHHHHHhcChHHHHHHHhccCcc--------hhHHHHHHHHHHHhhcCCHH
Confidence 88866431 0 011111 12345666555553221 15788899999998874332
Q ss_pred ----CchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHH--HHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 006201 363 ----DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVN--IALNFMLTALMQDPNNHVKDTTAWTLGR 436 (657)
Q Consensus 363 ----~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~--~i~~~l~~~l~~d~~~~vr~~a~~~l~~ 436 (657)
.+-.-++|.+...+.+.+.+.|..|+++++.+..+..++.+ .|+- .+++.+...| .-++.++-..++.+++.
T Consensus 356 qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi-~yLv~~giI~plcdlL-~~~D~~ii~v~Ld~l~n 433 (514)
T KOG0166|consen 356 QIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQI-KYLVEQGIIKPLCDLL-TCPDVKIILVALDGLEN 433 (514)
T ss_pred HHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHH-HHHHHcCCchhhhhcc-cCCChHHHHHHHHHHHH
Confidence 12235666666777778899999999999999887653333 3332 3778888888 66777777888888888
Q ss_pred HHhhhccCcCCCccCCcccHHHHHHH-----HHHHccc--chHHHHHHHHHHHHHHhh
Q 006201 437 MFEFLHGSTLETPIINQGNCQQIISV-----LLQSMKD--VPNVAEKACGALYFLAQG 487 (657)
Q Consensus 437 l~~~~~~~~~~~~~~~~~~~~~il~~-----l~~~l~d--~~~v~~~a~~al~~l~~~ 487 (657)
+-+...... .....-+...++. -++.|+. +..+...|...+.++...
T Consensus 434 il~~~e~~~----~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~ 487 (514)
T KOG0166|consen 434 ILKVGEAEK----NRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSE 487 (514)
T ss_pred HHHHHHHhc----cccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence 777643110 0000222222221 1233443 456777777777776643
No 45
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.35 E-value=4.3e-09 Score=109.98 Aligned_cols=355 Identities=17% Similarity=0.226 Sum_probs=239.4
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHH
Q 006201 97 ILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKIL 176 (657)
Q Consensus 97 ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~ 176 (657)
++.++.+.+...-..++.+|..+.....|....+.+.+.+...+..+++.+|..++..+..+.+.- ......-.-..++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~-~~~~~~~~~~~l~ 121 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHS-EGAAQLLVDNELL 121 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-HHHHHHhcCccHH
Confidence 788888777666678889999999877664457889999999999999999999999988887654 2211011225678
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHH
Q 006201 177 TAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAP 256 (657)
Q Consensus 177 ~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 256 (657)
+.+..++. +++..|...|+++|..+...-.. .. ..+.......+...+..++..+|..+++++..++...++.+..
T Consensus 122 ~~i~~~L~--~~d~~Va~~A~~~L~~l~~~~~~-~~-~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~ 197 (503)
T PF10508_consen 122 PLIIQCLR--DPDLSVAKAAIKALKKLASHPEG-LE-QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEA 197 (503)
T ss_pred HHHHHHHc--CCcHHHHHHHHHHHHHHhCCchh-HH-HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88999998 89999999999999998764211 10 0001223556666666667889999999999999888776644
Q ss_pred hHH-HHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCc
Q 006201 257 YIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEED 335 (657)
Q Consensus 257 ~~~-~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d 335 (657)
... ++++.++..++++|.-++..+++.+..+++.... ..|+.. ..+++.+.+.+...++|
T Consensus 198 ~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g-----------------~~yL~~--~gi~~~L~~~l~~~~~d 258 (503)
T PF10508_consen 198 VVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHG-----------------LQYLEQ--QGIFDKLSNLLQDSEED 258 (503)
T ss_pred HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhH-----------------HHHHHh--CCHHHHHHHHHhccccC
Confidence 332 5899999999988888899999999999874311 123222 13566666666554444
Q ss_pred cccCCCcchHhh-hHHHHHHHHHhhcCCC---chhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCC-cc----hHH
Q 006201 336 QDQDEGAWNIAM-AGGTCLGLVARTVGDD---IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPE-KL----VPL 406 (657)
Q Consensus 336 ~~~d~~~~~~r~-~a~~~L~~l~~~~~~~---~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~-~~----~~~ 406 (657)
+ ..-.+.. ......+.++...+.. ..|.++..+.+.+.+.+...+.+|+-++|.|+...... .+ .+-
T Consensus 259 p----~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~ 334 (503)
T PF10508_consen 259 P----RLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPA 334 (503)
T ss_pred C----cccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchH
Confidence 3 1112221 2225556666653332 35777777888888888999999999999998643111 11 223
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHH-------------HHHHHcccc-hH
Q 006201 407 VNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIIS-------------VLLQSMKDV-PN 472 (657)
Q Consensus 407 ~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~-------------~l~~~l~d~-~~ 472 (657)
+..++..+-... ......+|.+++.+++.+...... ....-+..+.. .+...++.. +.
T Consensus 335 ~~~~l~~~~~~~-~~~~~~lk~r~l~al~~il~~~~~-------~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~e 406 (503)
T PF10508_consen 335 MKHVLKAIGDAI-KSGSTELKLRALHALASILTSGTD-------RQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPE 406 (503)
T ss_pred HHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHhcCCC-------CchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchH
Confidence 445566666666 667778999999999999765431 11111112222 333333433 78
Q ss_pred HHHHHHHHHHHHHhh
Q 006201 473 VAEKACGALYFLAQG 487 (657)
Q Consensus 473 v~~~a~~al~~l~~~ 487 (657)
+|.++...+..++..
T Consensus 407 lr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 407 LRCAAYRLLQALAAQ 421 (503)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999888864
No 46
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=7.3e-07 Score=94.11 Aligned_cols=451 Identities=16% Similarity=0.185 Sum_probs=271.7
Q ss_pred ccHHHHHHHHHhc----CCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHHHHHHhcC--C------
Q 006201 36 PGFLLSLAGELVN----DEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLS--S------ 103 (657)
Q Consensus 36 ~~~~~~L~~~l~~----~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~--~------ 103 (657)
+++...+++++.. .-.++++-.++..++.+.+... ..|..+-|-....+..-++.+|. +
T Consensus 297 ~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~---------~twkll~PHl~~ii~~vIFPlmc~~d~deelw 367 (1010)
T KOG1991|consen 297 QGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQCVSHA---------STWKLLKPHLQVIIQDVIFPLMCFNDEDEELW 367 (1010)
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhccHH---------HHHHHhhhHHHHHHHHhhhhhcCCCcccHHHH
Confidence 3455555555542 2257888888899999888753 57888888777777788888765 2
Q ss_pred ---CChHHH-------------HHHHHHHHHHHhhhcCCCCCchHHHHHHHhhc------CC--ChhHHHHHHHHHHHHh
Q 006201 104 ---PAHDAR-------------STASQVVAKVAGIELPHKQWPELIGALLSNIH------QL--PPHTKQATLETLGYIC 159 (657)
Q Consensus 104 ---~~~~vr-------------~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~------~~--~~~~~~~~l~~l~~i~ 159 (657)
+.+.+| .++...+..++++..+ ...|.+++++.+.++ .+ ++..+++|++.++.++
T Consensus 368 e~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~k-e~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~ 446 (1010)
T KOG1991|consen 368 EEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGK-ETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLA 446 (1010)
T ss_pred hcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcch-hhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHH
Confidence 123454 3566677778877745 588999999999987 22 4567789999999999
Q ss_pred hhcc-ccccchhhHhH-HHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhcc-CCcHHHH
Q 006201 160 EEVS-SDAVEQDHVNK-ILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATL-SPEVKIR 236 (657)
Q Consensus 160 ~~~~-~~~l~~~~~~~-l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~-~~~~~~~ 236 (657)
+... +..+ ...++. +++.++..++ ++.--+|..|+..++.+.. ..|.++......+......+. +.+-.||
T Consensus 447 ~~L~K~s~~-~~~mE~flv~hVfP~f~--s~~g~Lrarac~vl~~~~~---~df~d~~~l~~ale~t~~~l~~d~~lPV~ 520 (1010)
T KOG1991|consen 447 SILLKKSPY-KSQMEYFLVNHVFPEFQ--SPYGYLRARACWVLSQFSS---IDFKDPNNLSEALELTHNCLLNDNELPVR 520 (1010)
T ss_pred HHHccCCch-HHHHHHHHHHHhhHhhc--CchhHHHHHHHHHHHHHHh---ccCCChHHHHHHHHHHHHHhccCCcCchh
Confidence 7652 1222 222322 3444455556 5667889999999888542 355554444566666666665 7788899
Q ss_pred HHHHHHHHHHHHHHH---HhhHHhHHHHHHHHHHHHhcCChHHHHHHHHH-HHHHhHHHHHhhhhcCCCCCCCCCCchhh
Q 006201 237 QAAFECLVAISSTYY---EKLAPYIQDIFNITAKAVREDEEPVALQAIEF-WSSVCDEEIDILEEYGGDFSGDSDIPCFY 312 (657)
Q Consensus 237 ~~~~~~l~~l~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (657)
..+.-+|..+++... +++.+|++.+++-++...+..+-+.-..+++- ...+++.- ..
T Consensus 521 VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseEl-------------------sP 581 (1010)
T KOG1991|consen 521 VEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEEL-------------------SP 581 (1010)
T ss_pred hHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhh-------------------ch
Confidence 999999999888765 56889999999998888776544433333332 22233221 12
Q ss_pred HHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhc---CC------CchhchHHHHHhhhcCcch-h
Q 006201 313 FIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV---GD------DIVPLVMPFVEENITKQEW-R 382 (657)
Q Consensus 313 ~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~---~~------~~~~~l~~~l~~~l~~~~~-~ 382 (657)
|.....+.+.....+.+...+++++.++ +-..+|..+|.++.+.+ .+ ..-|.+.|.+.-.+++.-- -
T Consensus 582 fA~eL~q~La~~F~k~l~~~~~~~~~~d---dk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~df 658 (1010)
T KOG1991|consen 582 FAVELCQNLAETFLKVLQTSEDEDESDD---DKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDF 658 (1010)
T ss_pred hHHHHHHHHHHHHHHHHhccCCCCccch---HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3333334444444444443222222222 23445666666665533 21 2234555555544443211 2
Q ss_pred hHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHH
Q 006201 383 QREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISV 462 (657)
Q Consensus 383 ~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~ 462 (657)
+++ ++-....+.- -...+.+.+-++++.+...+ ++.-..--...+-++.++.....+.. ...+.|...++..
T Consensus 659 yeE-~~ei~~~~t~--~~~~Isp~mW~ll~li~e~~-~~~~~dyf~d~~~~l~N~vt~g~~~~----~s~~~y~~il~~i 730 (1010)
T KOG1991|consen 659 YEE-LLEIVSSLTF--LSKEISPIMWGLLELILEVF-QDDGIDYFTDMMPALHNYVTYGTPSL----LSNPDYLQILLEI 730 (1010)
T ss_pred HHH-HHHHHhhhhh--hhcccCHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhheeeCchhh----hccchHHHHHHHH
Confidence 222 2222222211 12456788889999999998 66554444556667777776554221 2455677777777
Q ss_pred HHHHccc-c--hHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcc
Q 006201 463 LLQSMKD-V--PNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCST 539 (657)
Q Consensus 463 l~~~l~d-~--~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~ 539 (657)
+-+.+.+ + ..=+..||..+..++-++.+ .+..+++.++...+..+..... ....|..+++......-.-|
T Consensus 731 ~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg------~~dq~iplf~~~a~~~l~~~~e-~s~~~~~~leVvinalyynP 803 (1010)
T KOG1991|consen 731 IKKVLTSENGEDSDCESACKLLEVIILNCKG------LLDQYIPLFLELALSRLTREVE-TSELRVMLLEVVINALYYNP 803 (1010)
T ss_pred HHHHHcCCCCchHHHHHHHHHHHHHHHHhcC------cHhhHhHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHcCc
Confidence 7777764 2 34456789999999888753 4555666666666555544221 24566666665544433333
No 47
>PRK09687 putative lyase; Provisional
Probab=99.33 E-value=5.9e-10 Score=106.43 Aligned_cols=251 Identities=13% Similarity=0.076 Sum_probs=172.2
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCC
Q 006201 134 GALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSN 213 (657)
Q Consensus 134 ~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~ 213 (657)
+.|...+.+++..+|..+...|..+-. ..+++.+...+. +.++.+|..++.+|+.+-.- .
T Consensus 26 ~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~--~~d~~vR~~A~~aLg~lg~~------~ 85 (280)
T PRK09687 26 DELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCS--SKNPIERDIGADILSQLGMA------K 85 (280)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHh--CCCHHHHHHHHHHHHhcCCC------c
Confidence 556777788899999999988876422 223445555556 67899999999999984210 0
Q ss_pred hhhHHHHHHHHHhh-ccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHH
Q 006201 214 DMERDYIMRVVCEA-TLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEI 292 (657)
Q Consensus 214 ~~~~~~il~~l~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~ 292 (657)
. .....++.+... .+++++.||..++..|+.+..... ...+.+++.+...+.|.++.||..++..+..+...
T Consensus 86 ~-~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~----~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~-- 158 (280)
T PRK09687 86 R-CQDNVFNILNNLALEDKSACVRASAINATGHRCKKNP----LYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDE-- 158 (280)
T ss_pred c-chHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc----ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH--
Confidence 0 013456666554 578899999999999998753221 11234555555667788889999888776544321
Q ss_pred HhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHH
Q 006201 293 DILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFV 372 (657)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l 372 (657)
..++.|+..+.+ .+|.+|..|..+|+.+.. -.|...+.|
T Consensus 159 ---------------------------~ai~~L~~~L~d---------~~~~VR~~A~~aLg~~~~-----~~~~~~~~L 197 (280)
T PRK09687 159 ---------------------------AAIPLLINLLKD---------PNGDVRNWAAFALNSNKY-----DNPDIREAF 197 (280)
T ss_pred ---------------------------HHHHHHHHHhcC---------CCHHHHHHHHHHHhcCCC-----CCHHHHHHH
Confidence 234555555541 236799999999888721 134556667
Q ss_pred HhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCC
Q 006201 373 EENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIIN 452 (657)
Q Consensus 373 ~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 452 (657)
...+.|.+|.+|.+|+.+||.+.+ +..+|.|++.+ ++++ +|..++.++|.+..
T Consensus 198 ~~~L~D~~~~VR~~A~~aLg~~~~-----------~~av~~Li~~L-~~~~--~~~~a~~ALg~ig~------------- 250 (280)
T PRK09687 198 VAMLQDKNEEIRIEAIIGLALRKD-----------KRVLSVLIKEL-KKGT--VGDLIIEAAGELGD------------- 250 (280)
T ss_pred HHHhcCCChHHHHHHHHHHHccCC-----------hhHHHHHHHHH-cCCc--hHHHHHHHHHhcCC-------------
Confidence 777789999999999999998653 23578888889 7766 67778888876655
Q ss_pred cccHHHHHHHHHHHcc-c-chHHHHHHHHHHHH
Q 006201 453 QGNCQQIISVLLQSMK-D-VPNVAEKACGALYF 483 (657)
Q Consensus 453 ~~~~~~il~~l~~~l~-d-~~~v~~~a~~al~~ 483 (657)
+..+|.|.+.++ + ++.|+..|..++..
T Consensus 251 ----~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 251 ----KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred ----HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 346677777776 3 68888888887753
No 48
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.1e-07 Score=100.85 Aligned_cols=507 Identities=13% Similarity=0.125 Sum_probs=288.4
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHHHHHHhcCCC-ChHHHHHHHHHH
Q 006201 38 FLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSP-AHDARSTASQVV 116 (657)
Q Consensus 38 ~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~-~~~vr~~aa~~l 116 (657)
++..|+..+.+ .+..+|+.||.-+++...+ ++.+-.+++...++..+.-- ++..-..+|.++
T Consensus 342 vie~Lls~l~d--~dt~VrWSaAKg~grvt~r---------------lp~~Lad~vi~svid~~~p~e~~~aWHgacLaL 404 (1133)
T KOG1943|consen 342 VIEHLLSALSD--TDTVVRWSAAKGLGRVTSR---------------LPPELADQVIGSVIDLFNPAEDDSAWHGACLAL 404 (1133)
T ss_pred HHHHHHHhccC--CcchhhHHHHHHHHHHHcc---------------CcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHH
Confidence 34445555554 5899999999999997653 56667777777777765543 367788999999
Q ss_pred HHHHhhhc--CCCCCchHHHHHHHhhcCC--------ChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCC
Q 006201 117 AKVAGIEL--PHKQWPELIGALLSNIHQL--------PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNAS 186 (657)
Q Consensus 117 ~~i~~~~~--~~~~~~~l~~~l~~~l~~~--------~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~ 186 (657)
+.+|..-. | ...++++|.+...+.-+ ...+|.+|+.++..+.+.+++..+ .+.+..+.+.++...--
T Consensus 405 AELA~rGlLlp-s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l-~p~l~~L~s~LL~~AlF- 481 (1133)
T KOG1943|consen 405 AELALRGLLLP-SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDL-KPVLQSLASALLIVALF- 481 (1133)
T ss_pred HHHHhcCCcch-HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhh-hHHHHHHHHHHHHHHhc-
Confidence 99998643 4 46678999988877532 357899999999999999888777 67778888877654443
Q ss_pred CCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHH
Q 006201 187 ESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITA 266 (657)
Q Consensus 187 ~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~ 266 (657)
|.+..+|.+|..+|...+....+ +... -.++.. .+.-+...|.++...+...+..++.+..+.+++++.
T Consensus 482 DrevncRRAAsAAlqE~VGR~~n-~p~G---i~Lis~----~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t--- 550 (1133)
T KOG1943|consen 482 DREVNCRRAASAALQENVGRQGN-FPHG---ISLIST----IDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLT--- 550 (1133)
T ss_pred CchhhHhHHHHHHHHHHhccCCC-CCCc---hhhhhh----cchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHh---
Confidence 88999999999999987654222 1111 112211 122245567778888888777776655554444432
Q ss_pred HHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHh
Q 006201 267 KAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIA 346 (657)
Q Consensus 267 ~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r 346 (657)
..+.+-|..+|..+...+..+...+++.. ...+++++++.... . +-..|
T Consensus 551 ~Kv~HWd~~irelaa~aL~~Ls~~~pk~~------------------a~~~L~~lld~~ls----~---------~~~~r 599 (1133)
T KOG1943|consen 551 KKVCHWDVKIRELAAYALHKLSLTEPKYL------------------ADYVLPPLLDSTLS----K---------DASMR 599 (1133)
T ss_pred cccccccHHHHHHHHHHHHHHHHhhHHhh------------------cccchhhhhhhhcC----C---------ChHHh
Confidence 23678899999999988888887654321 22334444443321 0 01223
Q ss_pred hhHHHHHHHHHhhcCC--Cc-----------hhchHHHHH-hhhcCc-chhhHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 006201 347 MAGGTCLGLVARTVGD--DI-----------VPLVMPFVE-ENITKQ-EWRQREAATYAFGSILEGPSPEKLVPLVNIAL 411 (657)
Q Consensus 347 ~~a~~~L~~l~~~~~~--~~-----------~~~l~~~l~-~~l~~~-~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~ 411 (657)
.....+.+.+...+-. .+ ++.+++.+. ....-. .-..|.+.+..+..+...- ......++..-.
T Consensus 600 ~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~-~~~~~~~v~e~~ 678 (1133)
T KOG1943|consen 600 HGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSK-DRLFQDFVIENW 678 (1133)
T ss_pred hhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhcc-chhHHHHHHHHH
Confidence 3333333332221100 01 111111111 111100 0123333334444443321 111112222222
Q ss_pred HH-HHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHH-HHHHHHHHHccc--chHHHHHHHHHHHHHHhh
Q 006201 412 NF-MLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQ-QIISVLLQSMKD--VPNVAEKACGALYFLAQG 487 (657)
Q Consensus 412 ~~-l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~-~il~~l~~~l~d--~~~v~~~a~~al~~l~~~ 487 (657)
.. +.+.+ .+++ .+|.++.++++.++.... ...+... +++...+..+.+ +..+|..-..++..+...
T Consensus 679 ~~ll~~~l-~~~n-~i~~~av~av~~l~s~y~--------~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~ 748 (1133)
T KOG1943|consen 679 QMLLAQNL-TLPN-QIRDAAVSAVSDLVSTYV--------KADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSE 748 (1133)
T ss_pred HHHHHHhh-cchH-HHHHHHHHHHHHHHHHHH--------hcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHH
Confidence 22 33334 5566 899999999999998764 1222222 455556665554 355665555555554432
Q ss_pred ccCCCCCCCCCc-hhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHhhhc
Q 006201 488 FEDAISPSSPLT-PFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD-ETAPMVMQLVPLIMMELHQTLEAQK 565 (657)
Q Consensus 488 ~~~~~~~~~~l~-~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~ 565 (657)
. +. ++-+.+...++......- ...-|...+.++..+.+..+. .+..-+.+++..+++.+.+...+.
T Consensus 749 ~---------i~~~~q~~lc~~~l~~~p~d~--~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~- 816 (1133)
T KOG1943|consen 749 L---------IHRHLQEKLCKLVLELLPSDA--WAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDS- 816 (1133)
T ss_pred h---------hchHHHHHHHHHHhccCcccc--cHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhccccc-
Confidence 1 22 334444444444443321 234566788888888887772 233455666677777777764321
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhH-HHHHHHHHHHHHHcccCCcchhhHHHHHHHHHH
Q 006201 566 LSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQ-YADQMMGLFLRVFAIRSATAHEEAMLAIGALAY 637 (657)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~-~~~~i~~~l~~~l~~~~~~v~~~~~~~l~~l~~ 637 (657)
-.|.-. =+|..++..+..+...+.+.+ .+.+ -+..++..+++.-.+.-..+|+-+..++..+..
T Consensus 817 --rGDVGs--wVReaAm~al~~~~~~l~~p~----~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~ 881 (1133)
T KOG1943|consen 817 --RGDVGS--WVREAAMKALSSLLDTLSSPK----LLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVV 881 (1133)
T ss_pred --CccHHH--HHHHHHHHHHHhhhhhhcCcc----cccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceee
Confidence 123322 378888888888777665411 0222 334455544444443333346666666555443
No 49
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.30 E-value=4.6e-11 Score=109.58 Aligned_cols=362 Identities=12% Similarity=0.157 Sum_probs=220.4
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcC
Q 006201 133 IGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFS 212 (657)
Q Consensus 133 ~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~ 212 (657)
+|.+.+.+-+.+-+....|..-+..+...-...-+..-.-..++|.+++.+.+ ....-.+..|..++.++.+-......
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~-~q~~mlqfEAaWalTNiaSGtt~QTk 151 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDE-IQRDMLQFEAAWALTNIASGTTQQTK 151 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHh-cchhHHHHHHHHHHhhhccCcccceE
Confidence 47788888777777776776666665543211122122234568888888853 34445667788888887653221110
Q ss_pred ChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHH--HHHHHHHHHHhcCCh--HHHHHHHHHHHHHh
Q 006201 213 NDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ--DIFNITAKAVREDEE--PVALQAIEFWSSVC 288 (657)
Q Consensus 213 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~--~v~~~a~~~~~~l~ 288 (657)
.. ....-++.+++++.+.+.++|..++++|+.++...+.. ..|+- ..++.++..+.+... .+...+.-.++.+|
T Consensus 152 vV-vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~-RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlc 229 (526)
T COG5064 152 VV-VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGC-RDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLC 229 (526)
T ss_pred EE-EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhH-HHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhh
Confidence 00 00124566667777788999999999999998765433 33332 355666666555444 44556666677787
Q ss_pred HHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCC---Cch
Q 006201 289 DEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD---DIV 365 (657)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~---~~~ 365 (657)
+.. ..-|.+.-+ .+.+|.+.+.+-. . |+ .+-.-|.+++..++....+ .++
T Consensus 230 RGk--------------nP~P~w~~i----sqalpiL~KLiys-~-D~-------evlvDA~WAiSYlsDg~~E~i~avl 282 (526)
T COG5064 230 RGK--------------NPPPDWSNI----SQALPILAKLIYS-R-DP-------EVLVDACWAISYLSDGPNEKIQAVL 282 (526)
T ss_pred CCC--------------CCCCchHHH----HHHHHHHHHHHhh-c-CH-------HHHHHHHHHHHHhccCcHHHHHHHH
Confidence 642 111222333 3456666554422 1 11 2233455666666553321 111
Q ss_pred -hchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhcc
Q 006201 366 -PLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHG 443 (657)
Q Consensus 366 -~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~ 443 (657)
.-+.+.+.+.+.+++.++..-|+..+|.|..|.+ ....-.+ -..++.+...| .++..++|..|||++++++.--..
T Consensus 283 d~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D-~QTqviI~~G~L~a~~~lL-s~~ke~irKEaCWTiSNITAGnte 360 (526)
T COG5064 283 DVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSD-DQTQVIINCGALKAFRSLL-SSPKENIRKEACWTISNITAGNTE 360 (526)
T ss_pred hcCCcHHHHHHhcCccccccCHHHHhhcCeeecCc-cceehheecccHHHHHHHh-cChhhhhhhhhheeecccccCCHH
Confidence 1233446677788888899999999999998853 2221111 23466677778 888889999999999988764320
Q ss_pred CcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhH--HHHHHHHHHhhccccchh
Q 006201 444 STLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFF--QEIVQALLTVTHREDAGE 520 (657)
Q Consensus 444 ~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~--~~i~~~L~~~l~~~~~~~ 520 (657)
....-.-..++|.|+..|.. +-+++..||||+.+...... ...++..|+ ..++..|+.++.-.+
T Consensus 361 ------qiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~----~~PD~iryLv~qG~IkpLc~~L~~~d--- 427 (526)
T COG5064 361 ------QIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGL----NRPDIIRYLVSQGFIKPLCDLLDVVD--- 427 (526)
T ss_pred ------HHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcccc----CCchHHHHHHHccchhHHHHHHhccC---
Confidence 11122234567888888875 67899999999999876532 233444454 366788888887665
Q ss_pred hhHHHHHHHHHHHHHHhcc
Q 006201 521 SRLRTAAYETLNEVVRCST 539 (657)
Q Consensus 521 ~~~~~~~~~al~~l~~~~~ 539 (657)
.++-+.+++++..+.+.-.
T Consensus 428 Nkiiev~LD~~eniLk~Ge 446 (526)
T COG5064 428 NKIIEVALDAIENILKVGE 446 (526)
T ss_pred ccchhhhHHHHHHHHhhhh
Confidence 3455567888888877654
No 50
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.29 E-value=2.4e-08 Score=104.49 Aligned_cols=386 Identities=16% Similarity=0.194 Sum_probs=237.5
Q ss_pred ChhHHHHHHHHhcCCChHHHHHHHHHHHH-HHhcC-cccHH-HHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHH
Q 006201 1 MSAEVTQILLNAQSVDGTVRKQAEESLKQ-YQEQN-LPGFL-LSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFE 77 (657)
Q Consensus 1 ~~~~l~~~l~~~~s~d~~~r~~A~~~L~~-~~~~~-~~~~~-~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~ 77 (657)
||+.+...++++.+. +.+.++-..++. +.... ...+. ..++..+.+ + +.+.-..+.-+|++.+...
T Consensus 1 ~~~~~~~~l~~l~~~--~~~~~~L~~l~~~~~~~~~l~~~~~~~lf~~L~~-~-~~e~v~~~~~iL~~~l~~~------- 69 (503)
T PF10508_consen 1 MEEWINELLEELSSK--AERLEALPELKTELSSSPFLERLPEPVLFDCLNT-S-NREQVELICDILKRLLSAL------- 69 (503)
T ss_pred CchHHHHHHHHHhcc--cchHHHHHHHHHHHhhhhHHHhchHHHHHHHHhh-c-ChHHHHHHHHHHHHHHhcc-------
Confidence 888999999999776 344444444442 22211 11221 124555664 2 3333355666788877632
Q ss_pred hhhhcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC---CCCchHHHHHHHhhcCCChhHHHHHHHH
Q 006201 78 LVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH---KQWPELIGALLSNIHQLPPHTKQATLET 154 (657)
Q Consensus 78 ~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~~l~~ 154 (657)
-+......+++.+..+|.++++.||..++..++.++...... -.-+++++.++.++.+++..+...|..+
T Consensus 70 -------~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~ 142 (503)
T PF10508_consen 70 -------SPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKA 142 (503)
T ss_pred -------CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHH
Confidence 122336678888999999999999999999999988653210 1347899999999999999999999999
Q ss_pred HHHHhhhccccccchhh-HhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcH
Q 006201 155 LGYICEEVSSDAVEQDH-VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEV 233 (657)
Q Consensus 155 l~~i~~~~~~~~l~~~~-~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~ 233 (657)
|..++..- ..+ ... -..+.+.+.+.+. ..+..+|..+.+++..+...-++.+..- ....+++.+...++++|.
T Consensus 143 L~~l~~~~--~~~-~~l~~~~~~~~L~~l~~--~~~~~vR~Rv~el~v~i~~~S~~~~~~~-~~sgll~~ll~eL~~dDi 216 (503)
T PF10508_consen 143 LKKLASHP--EGL-EQLFDSNLLSKLKSLMS--QSSDIVRCRVYELLVEIASHSPEAAEAV-VNSGLLDLLLKELDSDDI 216 (503)
T ss_pred HHHHhCCc--hhH-HHHhCcchHHHHHHHHh--ccCHHHHHHHHHHHHHHHhcCHHHHHHH-HhccHHHHHHHHhcCccH
Confidence 99998743 212 111 1122566666666 4577889889998888765433222110 002367777777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHH--HHHHHHHHHHhcC--Ch---HHH-HHHHHHHHHHhHHHHHhhhhcCCCCCCC
Q 006201 234 KIRQAAFECLVAISSTYYEKLAPYIQ--DIFNITAKAVRED--EE---PVA-LQAIEFWSSVCDEEIDILEEYGGDFSGD 305 (657)
Q Consensus 234 ~~~~~~~~~l~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~--~~---~v~-~~a~~~~~~l~~~~~~~~~~~~~~~~~~ 305 (657)
-++.++++++..++. .+... .|+. .+++.+...+.+. ++ .+. ...+.|...++...+
T Consensus 217 Lvqlnalell~~La~-~~~g~-~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~------------- 281 (503)
T PF10508_consen 217 LVQLNALELLSELAE-TPHGL-QYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSP------------- 281 (503)
T ss_pred HHHHHHHHHHHHHHc-ChhHH-HHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcCh-------------
Confidence 999999999999998 33322 3332 4666666665542 22 111 122344444443210
Q ss_pred CCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhc-CCCch--------hchHHHHHhhh
Q 006201 306 SDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV-GDDIV--------PLVMPFVEENI 376 (657)
Q Consensus 306 ~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~-~~~~~--------~~l~~~l~~~l 376 (657)
.-+...++.++..++..+.. .+-+.+..|.++++.++... |...+ ..++..+....
T Consensus 282 ------~~v~~~~p~~~~~l~~~~~s---------~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~ 346 (503)
T PF10508_consen 282 ------QEVLELYPAFLERLFSMLES---------QDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAI 346 (503)
T ss_pred ------HHHHHHHHHHHHHHHHHhCC---------CChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 11222334445555543321 11366788999999998755 43333 23444444455
Q ss_pred cCcchhhHHHHHHHHHHhhcCCCC---CcchHHHHHHH--------H-HHHHHhcCCCcHHHHHHHHHHHHHHHhhh
Q 006201 377 TKQEWRQREAATYAFGSILEGPSP---EKLVPLVNIAL--------N-FMLTALMQDPNNHVKDTTAWTLGRMFEFL 441 (657)
Q Consensus 377 ~~~~~~~r~aal~~l~~i~~~~~~---~~~~~~~~~i~--------~-~l~~~l~~d~~~~vr~~a~~~l~~l~~~~ 441 (657)
.+..-..|-.++.+++.+...... +.+.......+ . .++..+ +.|.|.+|.++..++..++.+-
T Consensus 347 ~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~-~qPF~elr~a~~~~l~~l~~~~ 422 (503)
T PF10508_consen 347 KSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLL-KQPFPELRCAAYRLLQALAAQP 422 (503)
T ss_pred cCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHh-cCCchHHHHHHHHHHHHHhcCH
Confidence 555567888999999999654321 11111111111 1 566677 8899999999999999888853
No 51
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=7.9e-08 Score=105.01 Aligned_cols=143 Identities=19% Similarity=0.283 Sum_probs=114.4
Q ss_pred HHHHHHHHhcCC--ChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhh
Q 006201 4 EVTQILLNAQSV--DGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (657)
Q Consensus 4 ~l~~~l~~~~s~--d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (657)
++++++....+| +++.|.+|.+.+.++++. ++.+.....++.. +..+.+|++|..+|-+.++. .
T Consensus 11 ~lldavv~~~~~~~s~~~r~eA~~~l~~lke~--~~~~~~~~~iL~~-s~~~~~k~f~Lqlle~vik~-----------~ 76 (1041)
T KOG2020|consen 11 ELLDAVVVTLNPEGSNEERGEAQQILEELKEE--PDSWLQVYLILKL-STNPILKYFALQLLENVIKF-----------R 76 (1041)
T ss_pred HHHHhHHHHhCcccchHHHHHHHHHHHHHHhC--cchHHHHHHHHhc-cCCchhheeeHHHHHHHHHH-----------h
Confidence 466666666665 678999999999999998 7777777777876 47899999999999998874 6
Q ss_pred cccCChHHHHHHHHHHHHhcCC----C-----ChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHH
Q 006201 82 WLSLDSSVKAQIKSFILKTLSS----P-----AHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATL 152 (657)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~----~-----~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l 152 (657)
|..++.+.+..+|.-++..... + ...++.+++..+..|++.++| ..||+++|.+.+.+.. ++..++.++
T Consensus 77 W~~~~~~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp-~~wp~~i~dl~~~s~~-s~~~~el~m 154 (1041)
T KOG2020|consen 77 WNSLPVEERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWP-AIWPTFIPDLAQSSKT-SETVCELSM 154 (1041)
T ss_pred cccCCccccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHH-hhcchhhhhHHHHhhc-CcccchHHH
Confidence 7788999999999888776432 1 246788999999999999999 6999999999998773 445566666
Q ss_pred HHHHHHhhhc
Q 006201 153 ETLGYICEEV 162 (657)
Q Consensus 153 ~~l~~i~~~~ 162 (657)
.++..+.+.+
T Consensus 155 ~Il~lLsEdv 164 (1041)
T KOG2020|consen 155 IILLLLSEEV 164 (1041)
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 52
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=2.9e-07 Score=93.44 Aligned_cols=193 Identities=10% Similarity=0.135 Sum_probs=128.8
Q ss_pred CChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccc
Q 006201 85 LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSS 164 (657)
Q Consensus 85 l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~ 164 (657)
++++--..+-+-++..|.+..+.+|+.|..++.+++-.+ | .....-+|.+.+.+.++|+.+..+|..++..+++.- |
T Consensus 137 vTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkY-P-eAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKn-P 213 (877)
T KOG1059|consen 137 VTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKY-P-EALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKN-P 213 (877)
T ss_pred cCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-h-HhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhC-C
Confidence 456666677788899999999999999999999999876 7 366777899999999999999999999999999886 4
Q ss_pred cccchhhHhHHHHHHHhccCCCCCC-----------------HHHHH-------------HHHHHHHHHHhhc-hhh---
Q 006201 165 DAVEQDHVNKILTAVVQGMNASESN-----------------NDVRL-------------AATRALYNALGFA-QAN--- 210 (657)
Q Consensus 165 ~~l~~~~~~~l~~~l~~~l~~~~~~-----------------~~vr~-------------~al~~l~~~~~~~-~~~--- 210 (657)
+-. -.+.|.|+..+.+++.+ |.+.+ .|...++.|+..+ ...
T Consensus 214 kny-----L~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 214 QNY-----LQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSS 288 (877)
T ss_pred ccc-----ccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence 321 11223333333321111 11111 2222233322211 000
Q ss_pred --cCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 006201 211 --FSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVC 288 (657)
Q Consensus 211 --~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~ 288 (657)
..+.......++-+..++.+.|+.++--.+-++..++..+|+.+..| -+++++++.|.|+.+|..|++++..++
T Consensus 289 g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~----kdlIlrcL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 289 GMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH----KDLILRCLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred CCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh----HHHHHHHhccCCchhHHHHHHHHHHHh
Confidence 01111112234444456667788888888888999888888766554 445567899999999999999887776
Q ss_pred H
Q 006201 289 D 289 (657)
Q Consensus 289 ~ 289 (657)
.
T Consensus 365 s 365 (877)
T KOG1059|consen 365 S 365 (877)
T ss_pred h
Confidence 5
No 53
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=4.9e-07 Score=92.69 Aligned_cols=455 Identities=14% Similarity=0.110 Sum_probs=259.7
Q ss_pred HHHHhcCCCC-hHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhH
Q 006201 96 FILKTLSSPA-HDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNK 174 (657)
Q Consensus 96 ~ll~~l~~~~-~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~ 174 (657)
.|.+.|.+.. ...+.+.-.+++.||+.. .-.+++|.+.....+.|..++.....-|-+.++.- ++.- --
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~----dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeq-pdLA-----LL 108 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGK----DVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQ-PDLA-----LL 108 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCC----cHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcC-CCce-----ee
Confidence 3445666554 455666677788888754 57899999999999999998876665554544443 2211 00
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhh
Q 006201 175 ILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKL 254 (657)
Q Consensus 175 l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 254 (657)
-+..+-..|. |+++.+|-.|++++.++-. +....-++-.+..+..|.++-||+.+..++..+-+..++
T Consensus 109 SIntfQk~L~--DpN~LiRasALRvlSsIRv--------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e-- 176 (968)
T KOG1060|consen 109 SINTFQKALK--DPNQLIRASALRVLSSIRV--------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE-- 176 (968)
T ss_pred eHHHHHhhhc--CCcHHHHHHHHHHHHhcch--------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh--
Confidence 1345666778 8999999999999988421 111234555667788899999999999998886554432
Q ss_pred HHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhh-c---CCCCCCCCCCchhhHHHhhhhhHHHHHHHHhh
Q 006201 255 APYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEE-Y---GGDFSGDSDIPCFYFIKHALPVLVPLLLETLL 330 (657)
Q Consensus 255 ~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~ 330 (657)
+-.++++++-..+.|.++-|.-.|.-.+..+|....++.-+ | +.-- ..+. .+.+. -++..|..+-+
T Consensus 177 --~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll---~dvd--eWgQv---vlI~mL~RYAR 246 (968)
T KOG1060|consen 177 --QKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLL---PDVD--EWGQV---VLINMLTRYAR 246 (968)
T ss_pred --hHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhc---cchh--hhhHH---HHHHHHHHHHH
Confidence 22367777778888988888777776667777655443211 0 0000 0000 00000 01222322211
Q ss_pred ----hh-cCccccCCCcchHhhhHHHHHHHHHhh-cC---CCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCC
Q 006201 331 ----KQ-EEDQDQDEGAWNIAMAGGTCLGLVART-VG---DDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPE 401 (657)
Q Consensus 331 ----~~-~~d~~~d~~~~~~r~~a~~~L~~l~~~-~~---~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~ 401 (657)
++ -.|++-+++. |..-.... .... .| +.-+..+++-....+.+.+..+-.|++.++..++...
T Consensus 247 ~~l~~P~~~~~~~e~n~---~~~~~~~~--~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~--- 318 (968)
T KOG1060|consen 247 HQLPDPTVVDSSLEDNG---RSCNLKDK--YNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN--- 318 (968)
T ss_pred hcCCCccccccccccCc---cccccccc--ccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH---
Confidence 11 0111100100 00000000 0000 01 1112344455555677777778788888777777431
Q ss_pred cchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCC----------cc-------------CCcccHHH
Q 006201 402 KLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLET----------PI-------------INQGNCQQ 458 (657)
Q Consensus 402 ~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~----------~~-------------~~~~~~~~ 458 (657)
....++..++..| . .++.+|+..+..+..++..-+.-..++ |. .....+..
T Consensus 319 ----~~~~i~kaLvrLL-r-s~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ 392 (968)
T KOG1060|consen 319 ----QVTKIAKALVRLL-R-SNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISE 392 (968)
T ss_pred ----HHHHHHHHHHHHH-h-cCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHH
Confidence 2455677788777 4 567788888888888876533111100 00 01112233
Q ss_pred HHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHh
Q 006201 459 IISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRC 537 (657)
Q Consensus 459 il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~ 537 (657)
+++.+..-.++ +..+...|..||+..... +...-+..+..|+.++.+.+ ..+..++.-.+..+++.
T Consensus 393 ILrE~q~YI~s~d~~faa~aV~AiGrCA~~----------~~sv~~tCL~gLv~Llsshd---e~Vv~eaV~vIk~Llq~ 459 (968)
T KOG1060|consen 393 ILRELQTYIKSSDRSFAAAAVKAIGRCASR----------IGSVTDTCLNGLVQLLSSHD---ELVVAEAVVVIKRLLQK 459 (968)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHh----------hCchhhHHHHHHHHHHhccc---chhHHHHHHHHHHHHhh
Confidence 44444333333 235677777888877654 34567788899999998875 45666777888888887
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHH
Q 006201 538 STDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVF 617 (657)
Q Consensus 538 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l 617 (657)
.+.....++. .+...+... .....|+.++..+|..+..+. ..++.++..+.+.+
T Consensus 460 ~p~~h~~ii~----~La~lldti------------~vp~ARA~IiWLige~~e~vp----------ri~PDVLR~laksF 513 (968)
T KOG1060|consen 460 DPAEHLEILF----QLARLLDTI------------LVPAARAGIIWLIGEYCEIVP----------RIAPDVLRKLAKSF 513 (968)
T ss_pred ChHHHHHHHH----HHHHHhhhh------------hhhhhhceeeeeehhhhhhcc----------hhchHHHHHHHHhh
Confidence 7754333333 233333221 112345556666666665422 24566777777777
Q ss_pred cccCCcchhhHHHHHHHH
Q 006201 618 AIRSATAHEEAMLAIGAL 635 (657)
Q Consensus 618 ~~~~~~v~~~~~~~l~~l 635 (657)
.+...+++-.++.+-..|
T Consensus 514 s~E~~evKlQILnL~aKL 531 (968)
T KOG1060|consen 514 SDEGDEVKLQILNLSAKL 531 (968)
T ss_pred ccccchhhHHHHHhhhhh
Confidence 777777777766655544
No 54
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=6.8e-07 Score=91.68 Aligned_cols=433 Identities=12% Similarity=0.120 Sum_probs=261.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhcCcccH---HHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhh
Q 006201 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGF---LLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQ 80 (657)
Q Consensus 4 ~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~~~~~---~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~ 80 (657)
-|.++..+.-+.|.++++-..-+|-++.+.+|.-. +..+-..|.| +++-+|..|...|... +
T Consensus 72 ~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~D--pN~LiRasALRvlSsI-R------------ 136 (968)
T KOG1060|consen 72 LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALKD--PNQLIRASALRVLSSI-R------------ 136 (968)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcC--CcHHHHHHHHHHHHhc-c------------
Confidence 46777888888888888888888888888765433 3334455665 4788888888777652 1
Q ss_pred hcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhh
Q 006201 81 RWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICE 160 (657)
Q Consensus 81 ~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~ 160 (657)
-+.+.+ -+.-.+-++..++.+.||+.||.+|-++-..+ | ++.+.+...+-.++.|.++.+.-.|+.++..+|.
T Consensus 137 -vp~IaP----I~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd-~-e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCP 209 (968)
T KOG1060|consen 137 -VPMIAP----IMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLD-P-EQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCP 209 (968)
T ss_pred -hhhHHH----HHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCC-h-hhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhch
Confidence 011222 22233445677889999999999999998877 5 3667888888899999999998889999988876
Q ss_pred hccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhh-c-hhhc-------------------------CC
Q 006201 161 EVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGF-A-QANF-------------------------SN 213 (657)
Q Consensus 161 ~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~-~-~~~~-------------------------~~ 213 (657)
+- -+.+ ..+...+.. .+. |.+.==+...++.|...+.. + .... ..
T Consensus 210 er-ldLI-HknyrklC~----ll~--dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~ 281 (968)
T KOG1060|consen 210 ER-LDLI-HKNYRKLCR----LLP--DVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVN 281 (968)
T ss_pred hH-HHHh-hHHHHHHHh----hcc--chhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCccc
Confidence 53 3444 455444443 333 32222245566666665431 1 1100 00
Q ss_pred hhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHH
Q 006201 214 DMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEID 293 (657)
Q Consensus 214 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~ 293 (657)
+.+...+++..-.++++.++.+..+++..+..++... ....++..+++.+.+ ..+++...+..+.+++...+.
T Consensus 282 d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~------~~~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~ 354 (968)
T KOG1060|consen 282 DPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN------QVTKIAKALVRLLRS-NREVQYVVLQNIATISIKRPT 354 (968)
T ss_pred CccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH------HHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchh
Confidence 1112346666666777788888888888777766432 233455555555554 334455555555555543322
Q ss_pred hhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHH
Q 006201 294 ILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVE 373 (657)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~ 373 (657)
++.+++..+. +. . .|+ ..+...-.+.|.+++. +.-++.+++-++
T Consensus 355 -------------------lF~P~lKsFf------v~-s-sDp------~~vk~lKleiLs~La~---esni~~ILrE~q 398 (968)
T KOG1060|consen 355 -------------------LFEPHLKSFF------VR-S-SDP------TQVKILKLEILSNLAN---ESNISEILRELQ 398 (968)
T ss_pred -------------------hhhhhhhceE------ee-c-CCH------HHHHHHHHHHHHHHhh---hccHHHHHHHHH
Confidence 2222222110 00 0 010 1222222344444443 344667778888
Q ss_pred hhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCc
Q 006201 374 ENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQ 453 (657)
Q Consensus 374 ~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 453 (657)
.++.+.+...--+++.++|..+... ...-+..+..++..+ .+.+..|...+..++.++...-+
T Consensus 399 ~YI~s~d~~faa~aV~AiGrCA~~~-----~sv~~tCL~gLv~Ll-sshde~Vv~eaV~vIk~Llq~~p----------- 461 (968)
T KOG1060|consen 399 TYIKSSDRSFAAAAVKAIGRCASRI-----GSVTDTCLNGLVQLL-SSHDELVVAEAVVVIKRLLQKDP----------- 461 (968)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHhh-----CchhhHHHHHHHHHH-hcccchhHHHHHHHHHHHHhhCh-----------
Confidence 8888887655556666777666543 122356678888888 77788888888888888877542
Q ss_pred ccHHHHHHHHHHHccc--chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHH
Q 006201 454 GNCQQIISVLLQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETL 531 (657)
Q Consensus 454 ~~~~~il~~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al 531 (657)
..+..++..+.+.+.. -+..|....|.++..|+. +...++.++..+.+-+.+.. ..+|.+++..-
T Consensus 462 ~~h~~ii~~La~lldti~vp~ARA~IiWLige~~e~----------vpri~PDVLR~laksFs~E~---~evKlQILnL~ 528 (968)
T KOG1060|consen 462 AEHLEILFQLARLLDTILVPAARAGIIWLIGEYCEI----------VPRIAPDVLRKLAKSFSDEG---DEVKLQILNLS 528 (968)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhh----------cchhchHHHHHHHHhhcccc---chhhHHHHHhh
Confidence 3344566666666643 256677777888877764 23456677777777666554 45555555544
Q ss_pred HHHHHhcc
Q 006201 532 NEVVRCST 539 (657)
Q Consensus 532 ~~l~~~~~ 539 (657)
..+.-...
T Consensus 529 aKLyl~~~ 536 (968)
T KOG1060|consen 529 AKLYLTNI 536 (968)
T ss_pred hhheEech
Confidence 44443333
No 55
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.10 E-value=1.8e-08 Score=107.43 Aligned_cols=271 Identities=19% Similarity=0.202 Sum_probs=180.7
Q ss_pred HHHHHHHhhcCC-ChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhh
Q 006201 132 LIGALLSNIHQL-PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQAN 210 (657)
Q Consensus 132 l~~~l~~~l~~~-~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~ 210 (657)
+++.+..++.+- ....+..|+..|..+...... ...++.++|.++.++. |+...||..|+.++..++..+.+.
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d----e~~LDRVlPY~v~l~~--Ds~a~Vra~Al~Tlt~~L~~Vr~~ 496 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD----EVKLDRVLPYFVHLLM--DSEADVRATALETLTELLALVRDI 496 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch----HHHHhhhHHHHHHHhc--CchHHHHHHHHHHHHHHHhhccCC
Confidence 445555555442 346677888888888777632 3457889999999999 899999999999999998876543
Q ss_pred cC--ChhhHHHHHHHHHhhccC-CcHHHHHHHHHHHHHHHHHHHHhhHHh-------------------------HHHHH
Q 006201 211 FS--NDMERDYIMRVVCEATLS-PEVKIRQAAFECLVAISSTYYEKLAPY-------------------------IQDIF 262 (657)
Q Consensus 211 ~~--~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~-------------------------~~~l~ 262 (657)
.. ...+.+++++.+..+..+ ....+|.+...++..+|...+.++..- ...+.
T Consensus 497 ~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~ 576 (1431)
T KOG1240|consen 497 PPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH 576 (1431)
T ss_pred CcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH
Confidence 22 223457888888888877 667788889999999998776554210 00000
Q ss_pred ----HHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhh-hhhHHHHHHHHhhhhcCccc
Q 006201 263 ----NITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHA-LPVLVPLLLETLLKQEEDQD 337 (657)
Q Consensus 263 ----~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~~l~~~l~~~~~d~~ 337 (657)
+.+...+.+.++.||..-++.+.-+|-- |.+.- =+-|++.+...|.
T Consensus 577 ~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~F----------------------FGk~ksND~iLshLiTfLN------- 627 (1431)
T KOG1240|consen 577 HTVEQMVSSLLSDSPPIVKRALLESIIPLCVF----------------------FGKEKSNDVILSHLITFLN------- 627 (1431)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH----------------------hhhcccccchHHHHHHHhc-------
Confidence 0111112222222222222222222210 00000 0112333333332
Q ss_pred cCCCcchHhhhHHHHHHHHHhhcCCC-chhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHH
Q 006201 338 QDEGAWNIAMAGGTCLGLVARTVGDD-IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLT 416 (657)
Q Consensus 338 ~d~~~~~~r~~a~~~L~~l~~~~~~~-~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~ 416 (657)
|.+|..|.+-.+.+.-++-..|.. +-..++|.+.+.+.|++..+-..|+.++..+++. .-.-++++.+++..+..
T Consensus 628 --DkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~--~ll~K~~v~~i~~~v~P 703 (1431)
T KOG1240|consen 628 --DKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKL--GLLRKPAVKDILQDVLP 703 (1431)
T ss_pred --CccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHh--cccchHHHHHHHHhhhh
Confidence 124999987777666666677776 6778999999999999999999999999999874 23345678888899999
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHhhhc
Q 006201 417 ALMQDPNNHVKDTTAWTLGRMFEFLH 442 (657)
Q Consensus 417 ~l~~d~~~~vr~~a~~~l~~l~~~~~ 442 (657)
.| .+||..||++++-.+...+..+.
T Consensus 704 lL-~hPN~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 704 LL-CHPNLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred he-eCchHHHHHHHHHHHHHHHhhhh
Confidence 99 99999999999999888877664
No 56
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=99.08 E-value=4.7e-10 Score=84.97 Aligned_cols=76 Identities=39% Similarity=0.536 Sum_probs=68.9
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHHHHHHhcC
Q 006201 23 AEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLS 102 (657)
Q Consensus 23 A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~ 102 (657)
||++|.++++++ |+|+..|+.++.+++.+..+|++|+++|||.|.++|+... ...|..++++.|..||+.+++.|.
T Consensus 1 AE~~L~~~~~~~-p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~---~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQN-PGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSK---QKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSC-TCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHH---HHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-hhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhh---ccCCCCCCHHHHHHHHHHHHHHHc
Confidence 799999999987 8999999999988778999999999999999999997554 457889999999999999999874
No 57
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=1.4e-06 Score=89.94 Aligned_cols=456 Identities=16% Similarity=0.157 Sum_probs=249.7
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhc-CCCChhHHHHHHHHHhhhcccchhhhHHHhhhh
Q 006201 3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVN-DEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (657)
Q Consensus 3 ~~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~-~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (657)
.-+-.++......|-+.++....++..+.+.+|...+..+-.++.+ +.+++-+|.+|...+...=
T Consensus 49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~-------------- 114 (734)
T KOG1061|consen 49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLR-------------- 114 (734)
T ss_pred hhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEe--------------
Confidence 3455566666666777888888888887776554444444344443 2457788888776665421
Q ss_pred cccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhh
Q 006201 82 WLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEE 161 (657)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~ 161 (657)
-+...+++...+..++.+.++.+|+.++.+.+++.........-..+++.|...+.|.++.+..+|+.++..|.+.
T Consensus 115 ----v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 115 ----VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHES 190 (734)
T ss_pred ----ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 1334566777889999999999999999999998877632234578899999999999999999999999999887
Q ss_pred ccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHH
Q 006201 162 VSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241 (657)
Q Consensus 162 ~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~ 241 (657)
- ++.........++..++..++ .-..=-+...++++.. |.+... .....+++.+...++..+..+-..+.+
T Consensus 191 ~-~~~~~~~l~~~~~~~lL~al~--ec~EW~qi~IL~~l~~---y~p~d~---~ea~~i~~r~~p~Lqh~n~avvlsavK 261 (734)
T KOG1061|consen 191 H-PSVNLLELNPQLINKLLEALN--ECTEWGQIFILDCLAE---YVPKDS---REAEDICERLTPRLQHANSAVVLSAVK 261 (734)
T ss_pred C-CCCCcccccHHHHHHHHHHHH--HhhhhhHHHHHHHHHh---cCCCCc---hhHHHHHHHhhhhhccCCcceEeehHH
Confidence 5 321101222344444454444 2222234445555544 443221 122467777777777777777777777
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhh--------cCCC-CCCCCCCch--
Q 006201 242 CLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEE--------YGGD-FSGDSDIPC-- 310 (657)
Q Consensus 242 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~--------~~~~-~~~~~~~~~-- 310 (657)
.+..+.......-......+-+.++..+. ..+++...++.-+.-+....+.+... |.+. +.-...+.+
T Consensus 262 v~l~~~~~~~~~~~~~~~K~~~pl~tlls-~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~ 340 (734)
T KOG1061|consen 262 VILQLVKYLKQVNELLFKKVAPPLVTLLS-SESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILI 340 (734)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccceeeec-ccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHH
Confidence 77776655544222223333333333332 23355555554333333333322111 1000 000000000
Q ss_pred hhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCC--chhchHHHHHhhhcCcchhhHHHHH
Q 006201 311 FYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDD--IVPLVMPFVEENITKQEWRQREAAT 388 (657)
Q Consensus 311 ~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~--~~~~l~~~l~~~l~~~~~~~r~aal 388 (657)
.-.....+.+++.-+..+-+ +.| -+.-+.+..|++.++....+. .++.+++.+... .+.-+ ..++
T Consensus 341 ~la~~~nl~qvl~El~eYat------evD---~~fvrkaIraig~~aik~e~~~~cv~~lLell~~~---~~yvv-qE~~ 407 (734)
T KOG1061|consen 341 ELANDANLAQVLAELKEYAT------EVD---VDFVRKAVRAIGRLAIKAEQSNDCVSILLELLETK---VDYVV-QEAI 407 (734)
T ss_pred HHhhHhHHHHHHHHHHHhhh------hhC---HHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhhc---cccee-eehh
Confidence 00001112222222221111 001 233446778888888776544 455555544321 23223 3345
Q ss_pred HHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHcc
Q 006201 389 YAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK 468 (657)
Q Consensus 389 ~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~ 468 (657)
..+..+...+ +... ..+++.+...+..=.+|..|.+-.|.+|++++.+.+ ...+++.+++.+.
T Consensus 408 vvi~dilRky-P~~~----~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~------------a~elL~~f~en~~ 470 (734)
T KOG1061|consen 408 VVIRDILRKY-PNKY----ESVVAILCENLDSLQEPEAKAALIWILGEYAERIEN------------ALELLESFLENFK 470 (734)
T ss_pred HHHHhhhhcC-CCch----hhhhhhhcccccccCChHHHHHHHHHHhhhhhccCc------------HHHHHHHHHhhcc
Confidence 5566666665 3332 223333333221126788999999999999999852 3667778888888
Q ss_pred c-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhh-ccccchhhhHHHHHH
Q 006201 469 D-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVT-HREDAGESRLRTAAY 528 (657)
Q Consensus 469 d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l-~~~~~~~~~~~~~~~ 528 (657)
| ...|+..-..+.-.+.-.. + +-...+++.++..- .+.+ +.++|..++
T Consensus 471 dE~~~Vql~LLta~ik~Fl~~------p----~~tq~~l~~vL~~~~~d~~--~~dlrDr~l 520 (734)
T KOG1061|consen 471 DETAEVQLELLTAAIKLFLKK------P----TETQELLQGVLPLATADTD--NPDLRDRGL 520 (734)
T ss_pred cchHHHHHHHHHHHHHHHhcC------C----ccHHHHHHHHHhhhhcccc--ChhhhhhHH
Confidence 7 4667665544444333210 1 13445555555543 3333 456665444
No 58
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.98 E-value=2.2e-08 Score=92.36 Aligned_cols=318 Identities=12% Similarity=0.125 Sum_probs=191.8
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHH
Q 006201 41 SLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLS-SPAHDARSTASQVVAKV 119 (657)
Q Consensus 41 ~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~-~~~~~vr~~aa~~l~~i 119 (657)
.|.+.+-+ .+.+..+.|..-+|+++.+.. -+.+.+-+...+.+.+++.|. .+.....-.||-+|..|
T Consensus 75 ~lt~~l~S--dDie~q~qav~kFR~~LS~E~----------~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNi 142 (526)
T COG5064 75 QLTQQLFS--DDIEQQLQAVYKFRKLLSKET----------SPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNI 142 (526)
T ss_pred HHHHHHhh--hHHHHHHHHHHHHHHHhcccc----------CCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhh
Confidence 34444443 267777788888888887532 244666666777788888885 44567778999999999
Q ss_pred HhhhcCCC---CCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhH--hHHHHHHHhccCCCCCCHHHHH
Q 006201 120 AGIELPHK---QWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHV--NKILTAVVQGMNASESNNDVRL 194 (657)
Q Consensus 120 ~~~~~~~~---~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~--~~l~~~l~~~l~~~~~~~~vr~ 194 (657)
+....... .-.+.+|.+++.+.+++..+|+.++.+|+.++...+ .. ++++ ...+..++..+.++..+..+-+
T Consensus 143 aSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~--~~-RD~vL~~galeplL~ll~ss~~~ismlR 219 (526)
T COG5064 143 ASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSE--GC-RDYVLQCGALEPLLGLLLSSAIHISMLR 219 (526)
T ss_pred ccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCch--hH-HHHHHhcCchHHHHHHHHhccchHHHHH
Confidence 98764311 235788999999999999999999999999977641 11 2222 1223444444443234456666
Q ss_pred HHHHHHHHHHhhchhhcCCh-hhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHH-HHHHHHHHHHhcC
Q 006201 195 AATRALYNALGFAQANFSND-MERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVRED 272 (657)
Q Consensus 195 ~al~~l~~~~~~~~~~~~~~-~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~ 272 (657)
.+..+|+++..-- +...+ ......++++..++...|+++...+|+++.-+....-+.+...+. .+...++..+.++
T Consensus 220 n~TWtLSNlcRGk--nP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~ 297 (526)
T COG5064 220 NATWTLSNLCRGK--NPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE 297 (526)
T ss_pred HhHHHHHHhhCCC--CCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc
Confidence 7788888866421 11111 122456777888877788888888888887665543333222221 1122222233333
Q ss_pred ChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHH
Q 006201 273 EEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTC 352 (657)
Q Consensus 273 ~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~ 352 (657)
+..+...+++....+.. ..|+ ..+--++..
T Consensus 298 sa~iqtPalR~vGNIVT------------------------------------------G~D~----QTqviI~~G---- 327 (526)
T COG5064 298 SAKIQTPALRSVGNIVT------------------------------------------GSDD----QTQVIINCG---- 327 (526)
T ss_pred cccccCHHHHhhcCeee------------------------------------------cCcc----ceehheecc----
Confidence 32222222222222111 0000 000011111
Q ss_pred HHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHH-HHHHHHHHHHhcCCCcHHHHHHHH
Q 006201 353 LGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTA 431 (657)
Q Consensus 353 L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~-~~i~~~l~~~l~~d~~~~vr~~a~ 431 (657)
+++ ++...+.++.-.+|..|++.++.|..|. .+.+...+ ..++|.++..+ ......+|..||
T Consensus 328 -----------~L~----a~~~lLs~~ke~irKEaCWTiSNITAGn-teqiqavid~nliPpLi~ll-s~ae~k~kKEAC 390 (526)
T COG5064 328 -----------ALK----AFRSLLSSPKENIRKEACWTISNITAGN-TEQIQAVIDANLIPPLIHLL-SSAEYKIKKEAC 390 (526)
T ss_pred -----------cHH----HHHHHhcChhhhhhhhhheeecccccCC-HHHHHHHHhcccchHHHHHH-HHHHHHHHHHHH
Confidence 122 2223355666688999999999999875 23333333 35789999999 888899999999
Q ss_pred HHHHHHHhhhc
Q 006201 432 WTLGRMFEFLH 442 (657)
Q Consensus 432 ~~l~~l~~~~~ 442 (657)
|++++......
T Consensus 391 WAisNatsgg~ 401 (526)
T COG5064 391 WAISNATSGGL 401 (526)
T ss_pred HHHHhhhcccc
Confidence 99998877653
No 59
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=4.1e-06 Score=89.37 Aligned_cols=475 Identities=12% Similarity=0.084 Sum_probs=253.6
Q ss_pred hHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcC-CChhHHHHHHHHHHHHhhhcccc
Q 006201 87 SSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQ-LPPHTKQATLETLGYICEEVSSD 165 (657)
Q Consensus 87 ~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~~l~~l~~i~~~~~~~ 165 (657)
+++.+.+...|+..+.+.+..||-.||..++.++... |..--.+.+..+++.+.- ++.....+++.+|..++..- -
T Consensus 336 ~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rl-p~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG--l 412 (1133)
T KOG1943|consen 336 PEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRL-PPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG--L 412 (1133)
T ss_pred HHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccC-cHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC--C
Confidence 3788899999999999999999999999999999987 411123344444443322 23567789999999887641 1
Q ss_pred ccchhhHhHHHHHHHhccCCC------CCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHH-HHhhccCCcHHHHHH
Q 006201 166 AVEQDHVNKILTAVVQGMNAS------ESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRV-VCEATLSPEVKIRQA 238 (657)
Q Consensus 166 ~l~~~~~~~l~~~l~~~l~~~------~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~-l~~~~~~~~~~~~~~ 238 (657)
.+ ..-+..++|.+.+++.-+ ..+..||.+|+-.+-.+..-.+....++ +...+... +...+-|++...|.+
T Consensus 413 Ll-ps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l~~L~s~LL~~AlFDrevncRRA 490 (1133)
T KOG1943|consen 413 LL-PSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VLQSLASALLIVALFDREVNCRRA 490 (1133)
T ss_pred cc-hHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HHHHHHHHHHHHHhcCchhhHhHH
Confidence 22 345677888888777641 2456799998887766554322211111 11222222 234455788899999
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCCh-H--HHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHH
Q 006201 239 AFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEE-P--VALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIK 315 (657)
Q Consensus 239 ~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~--v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (657)
+..++.+.+...+.+ ||--.++. ..|. . .|.. .|..++... .+ ...|..
T Consensus 491 AsAAlqE~VGR~~n~--p~Gi~Lis-------~~dy~sV~~rsN---cy~~l~~~i----a~------------~~~y~~ 542 (1133)
T KOG1943|consen 491 ASAALQENVGRQGNF--PHGISLIS-------TIDYFSVTNRSN---CYLDLCVSI----AE------------FSGYRE 542 (1133)
T ss_pred HHHHHHHHhccCCCC--CCchhhhh-------hcchhhhhhhhh---HHHHHhHHH----Hh------------hhhHHH
Confidence 999888877654322 11111211 1111 0 1111 122222210 00 113444
Q ss_pred hhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhh
Q 006201 316 HALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSIL 395 (657)
Q Consensus 316 ~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~ 395 (657)
++++.++ .+++..++ -.+|..|+.+|..++...++......+|-+.....+.+..-|+....+.|.+.
T Consensus 543 ~~f~~L~---t~Kv~HWd---------~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~ 610 (1133)
T KOG1943|consen 543 PVFNHLL---TKKVCHWD---------VKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVI 610 (1133)
T ss_pred HHHHHHH---hccccccc---------HHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHH
Confidence 4433322 22233321 15778899999999887776555444444444445677788999999999988
Q ss_pred cCCCCCc-chH-----H---HHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHH
Q 006201 396 EGPSPEK-LVP-----L---VNIALNFMLTALMQDP--NNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLL 464 (657)
Q Consensus 396 ~~~~~~~-~~~-----~---~~~i~~~l~~~l~~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~ 464 (657)
.++..-. +.. - +.++++.+...- -+. ....|.+.+..+.+++..-. +.............+.
T Consensus 611 ~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~-~~rg~~~lmr~~~~~~Ie~~s~s~~------~~~~~~v~e~~~~ll~ 683 (1133)
T KOG1943|consen 611 GALRKLEPVIKGLDENRIAGLLSIIPPICDRY-FYRGQGTLMRQATLKFIEQLSLSKD------RLFQDFVIENWQMLLA 683 (1133)
T ss_pred HHhhhhhhhhhhhHHHHhhhhhhhccHHHHHH-hccchHHHHHHHHHHHHHHhhhccc------hhHHHHHHHHHHHHHH
Confidence 7642111 011 1 112233332211 111 13556677777766665432 0011122222333444
Q ss_pred HHcccchHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHH
Q 006201 465 QSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAP 544 (657)
Q Consensus 465 ~~l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~ 544 (657)
+.+.+...+|..|.+++..++...... .. ....+++...+..+.+.+ +...|.-..-+++.+-...-. .+
T Consensus 684 ~~l~~~n~i~~~av~av~~l~s~y~~~----d~--~~~~~li~~~ls~~~~~~--~~~~r~g~~lal~~lp~~~i~--~~ 753 (1133)
T KOG1943|consen 684 QNLTLPNQIRDAAVSAVSDLVSTYVKA----DE--GEEAPLITRYLSRLTKCS--EERIRRGLILALGVLPSELIH--RH 753 (1133)
T ss_pred HhhcchHHHHHHHHHHHHHHHHHHHhc----Cc--hhhhHHHHHHHHHhcCch--HHHHHHHHHHHHccCcHHhhc--hH
Confidence 444332378999999999998765321 11 111156666666666554 345554333333333211110 12
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHccc----
Q 006201 545 MVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIR---- 620 (657)
Q Consensus 545 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~---- 620 (657)
+-..+...++... +++. +..-|...+..+..++..++..- +..-.+++++.+++++.+.
T Consensus 754 ~q~~lc~~~l~~~----------p~d~--~a~aR~~~V~al~~v~~~~~~~~-----~~~~~~k~~e~LL~~lddYttd~ 816 (1133)
T KOG1943|consen 754 LQEKLCKLVLELL----------PSDA--WAEARQQNVKALAHVCKTVTSLL-----FSESIEKFRETLLNALDDYTTDS 816 (1133)
T ss_pred HHHHHHHHHhccC----------cccc--cHHHHHHHHHHHHHHHHHHHHhh-----ccccHHHHHHHHHHHHhhccccc
Confidence 2222222222211 1221 22334455666666666666321 3344555566666666552
Q ss_pred ----CCcchhhHHHHHHHHHHHhc
Q 006201 621 ----SATAHEEAMLAIGALAYATG 640 (657)
Q Consensus 621 ----~~~v~~~~~~~l~~l~~~~g 640 (657)
.+-||+.||.++..+.....
T Consensus 817 rGDVGswVReaAm~al~~~~~~l~ 840 (1133)
T KOG1943|consen 817 RGDVGSWVREAAMKALSSLLDTLS 840 (1133)
T ss_pred CccHHHHHHHHHHHHHHhhhhhhc
Confidence 33489999999888876554
No 60
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=1.9e-05 Score=81.76 Aligned_cols=357 Identities=12% Similarity=0.121 Sum_probs=175.7
Q ss_pred CChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccc
Q 006201 85 LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSS 164 (657)
Q Consensus 85 l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~ 164 (657)
.++|....+-+.+-+.+.+.++.||++|+.|..++.+.. | +.-..+++...+.+.+.+.-+..+++..+..+|+.- +
T Consensus 135 ~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~-P-~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~-~ 211 (866)
T KOG1062|consen 135 CSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV-P-DLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKIS-P 211 (866)
T ss_pred CCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-c-hHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcC-H
Confidence 456666666677777788888888888888888888876 5 244555566666676767666677777777777764 3
Q ss_pred cccchhhHhHHHHHHHhccCC-------------CCCCHHHHHHHHHHHHHHHhhch---hhcC-----------ChhhH
Q 006201 165 DAVEQDHVNKILTAVVQGMNA-------------SESNNDVRLAATRALYNALGFAQ---ANFS-----------NDMER 217 (657)
Q Consensus 165 ~~l~~~~~~~l~~~l~~~l~~-------------~~~~~~vr~~al~~l~~~~~~~~---~~~~-----------~~~~~ 217 (657)
+.+ .+...+++.|+..|++ +-++|-++...++.|.-+-.--+ +.+. ...+.
T Consensus 212 ~~l--~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~ 289 (866)
T KOG1062|consen 212 DAL--SYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNA 289 (866)
T ss_pred HHH--HHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccc
Confidence 333 3334444443332221 11355566666665554322100 0000 00000
Q ss_pred --HHHHHHHHhhcc-CCcHHHHHHHHHHHHHHHHHHHHhhH----H-----------hHHHHHHHHHHHHhcCChHHHHH
Q 006201 218 --DYIMRVVCEATL-SPEVKIRQAAFECLVAISSTYYEKLA----P-----------YIQDIFNITAKAVREDEEPVALQ 279 (657)
Q Consensus 218 --~~il~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~----~-----------~~~~l~~~~~~~~~~~~~~v~~~ 279 (657)
.-+.+.+...+. .++..+|..++.+|+++.......+. . .+++-=..++.+++|.|..++..
T Consensus 290 GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrr 369 (866)
T KOG1062|consen 290 GNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRR 369 (866)
T ss_pred hhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 001111111111 24556677777777776654321111 0 01111113456889999999999
Q ss_pred HHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhh
Q 006201 280 AIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVART 359 (657)
Q Consensus 280 a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~ 359 (657)
|+|+...+... .-++.+.++++..+ ...++ ..+.....-+..+++.
T Consensus 370 alELs~~lvn~---------------------~Nv~~mv~eLl~fL----~~~d~---------~~k~~~as~I~~laEk 415 (866)
T KOG1062|consen 370 ALELSYALVNE---------------------SNVRVMVKELLEFL----ESSDE---------DFKADIASKIAELAEK 415 (866)
T ss_pred HHHHHHHHhcc---------------------ccHHHHHHHHHHHH----HhccH---------HHHHHHHHHHHHHHHh
Confidence 99988777653 12344444444443 32221 1232233333444444
Q ss_pred c-CCC--chhchHHHHHhhhcCcchhhHHHHHHH-HHHhhcCCCCCcchHH-HHHHHHHHHHH-hcCCCcHHHHHHHHHH
Q 006201 360 V-GDD--IVPLVMPFVEENITKQEWRQREAATYA-FGSILEGPSPEKLVPL-VNIALNFMLTA-LMQDPNNHVKDTTAWT 433 (657)
Q Consensus 360 ~-~~~--~~~~l~~~l~~~l~~~~~~~r~aal~~-l~~i~~~~~~~~~~~~-~~~i~~~l~~~-l~~d~~~~vr~~a~~~ 433 (657)
+ |+. .+..++..+...-+ -++...... +.-|+++.. + ...| ...++..+... +..-.++.+..-+.||
T Consensus 416 faP~k~W~idtml~Vl~~aG~----~V~~dv~~nll~LIa~~~~-e-~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~ 489 (866)
T KOG1062|consen 416 FAPDKRWHIDTMLKVLKTAGD----FVNDDVVNNLLRLIANAFQ-E-LHEYAVLRLYLALSEDTLLDISQEPLLQVASWC 489 (866)
T ss_pred cCCcchhHHHHHHHHHHhccc----ccchhhHHHHHHHHhcCCc-c-hhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHH
Confidence 4 221 23334443332211 122222222 223333321 1 1111 11222222211 1022445556778899
Q ss_pred HHHHHhhhccCcC-CCc-cCCcccHHHHHHHHHHHcc---cchHHHHHHHHHHHHHHhhcc
Q 006201 434 LGRMFEFLHGSTL-ETP-IINQGNCQQIISVLLQSMK---DVPNVAEKACGALYFLAQGFE 489 (657)
Q Consensus 434 l~~l~~~~~~~~~-~~~-~~~~~~~~~il~~l~~~l~---d~~~v~~~a~~al~~l~~~~~ 489 (657)
+|.+++.+.+..- +.| .... ..++..+.+.+. .+..++..|..|+..+...+.
T Consensus 490 IGEYGdlll~~~~~~~p~~vte---sdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~ 547 (866)
T KOG1062|consen 490 IGEYGDLLLDGANEEEPIKVTE---SDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFH 547 (866)
T ss_pred hhhhhHHhhcCccccCCCcCCH---HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcc
Confidence 9999976542100 001 1222 334444444443 247889999999998887653
No 61
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=0.00018 Score=78.19 Aligned_cols=261 Identities=13% Similarity=0.157 Sum_probs=167.8
Q ss_pred HhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCC-CCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 006201 357 ARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPS-PEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLG 435 (657)
Q Consensus 357 ~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~-~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~ 435 (657)
+.+..+.-+..+........++.+..++.-+...|..+....+ .......+..+...+...+ ++.....|...+.|+.
T Consensus 644 a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~-qs~~~~~~~~rl~~L~ 722 (1176)
T KOG1248|consen 644 APVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSF-QSSSSPAQASRLKCLK 722 (1176)
T ss_pred hccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHH-hccchHHHHHHHHHHH
Confidence 3333333333333333333344456777778888888877632 2234566778888888888 8888889999999999
Q ss_pred HHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHH--hhccCCCCCCCCCchhHHHHHHHHHHh
Q 006201 436 RMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLA--QGFEDAISPSSPLTPFFQEIVQALLTV 512 (657)
Q Consensus 436 ~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~--~~~~~~~~~~~~l~~~~~~i~~~L~~~ 512 (657)
.+.+..+ .....++...++.++=.+.+ +...|..|..+|..++ ....+.+..+ -...++.++..+...
T Consensus 723 ~L~~~~~-------~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isag 793 (1176)
T KOG1248|consen 723 RLLKLLS-------AEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAG 793 (1176)
T ss_pred HHHHhcc-------HHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhh
Confidence 9998764 13345666666666655665 6778888888888877 3322210001 011233333333333
Q ss_pred hccccchhhhHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 006201 513 THREDAGESRLRTAAYETLNEVVRCSTDE-TAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQK 591 (657)
Q Consensus 513 l~~~~~~~~~~~~~~~~al~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 591 (657)
+-... ..+....+-+++.++...+.. -.+++..+++.+...+.. ..+ +++..++..+..++..
T Consensus 794 l~gd~---~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s---------~sr----eI~kaAI~fikvlv~~ 857 (1176)
T KOG1248|consen 794 LVGDS---TRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLAS---------NSR----EIAKAAIGFIKVLVYK 857 (1176)
T ss_pred hcccH---HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhc---------CCH----HHHHHHHHHHHHHHHc
Confidence 22211 223322256667776666543 345666555555444432 122 4666899999999999
Q ss_pred hCCCcchhhHhhHHHHHHHHHHHHHHcccCCcchhhHHHHHHHHHHHhc-hhhhhccc
Q 006201 592 LGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATG-LCHHRRCC 648 (657)
Q Consensus 592 ~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~~~~l~~l~~~~g-~~f~~y~~ 648 (657)
+...- ..+|.+.|++.++....+....+|..+-..+..|++.+| ....+|+|
T Consensus 858 ~pe~~-----l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 858 FPEEC-----LSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLP 910 (1176)
T ss_pred CCHHH-----HhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCH
Confidence 88873 669999999999998888777899999999999999999 66777766
No 62
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.90 E-value=6.5e-07 Score=96.04 Aligned_cols=305 Identities=13% Similarity=0.146 Sum_probs=187.8
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHh--
Q 006201 176 LTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEK-- 253 (657)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-- 253 (657)
++.+..+++. -...+.|.+|++.+..+..++.+ +...+.+++.+..++.++..+||..++.+|.++.....+.
T Consensus 424 vs~lts~IR~-lk~~~tK~~ALeLl~~lS~~i~d----e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 424 VSVLTSCIRA-LKTIQTKLAALELLQELSTYIDD----EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred HHHHHHHHHh-hhcchhHHHHHHHHHHHhhhcch----HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCc
Confidence 3444444432 23467788999999988776542 3334789999999999999999999999999987542110
Q ss_pred --hHHhHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHhHHHHHhhhh----------cCCCCCCCCCCchhhHHHhhhhh
Q 006201 254 --LAPYIQDIFNITAKAVRE-DEEPVALQAIEFWSSVCDEEIDILEE----------YGGDFSGDSDIPCFYFIKHALPV 320 (657)
Q Consensus 254 --~~~~~~~l~~~~~~~~~~-~~~~v~~~a~~~~~~l~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~ 320 (657)
..-+..=++|.+-....| ....+|..-.+.+..++.+.....+. ..+..++... ...+--...|-.
T Consensus 499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~-~~~~~~~~~L~~ 577 (1431)
T KOG1240|consen 499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPE-QNYNTELQALHH 577 (1431)
T ss_pred ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccc-cccchHHHHHHH
Confidence 000111234444344444 33345555455566666655433221 0011111100 011111111112
Q ss_pred HHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCC-chhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCC
Q 006201 321 LVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDD-IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPS 399 (657)
Q Consensus 321 l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~-~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~ 399 (657)
.+...+..+.. | ..--+|++-.+.+..|+..+|.. --..+++.+..+++|.+|+.|-|-+..+..++-..+
T Consensus 578 ~V~~~v~sLls---d-----~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG 649 (1431)
T KOG1240|consen 578 TVEQMVSSLLS---D-----SPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG 649 (1431)
T ss_pred HHHHHHHHHHc---C-----CchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe
Confidence 22222222211 1 11367888888899999999854 456788888889999999999988777776554433
Q ss_pred CCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHcc-cchHHHHHHH
Q 006201 400 PEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK-DVPNVAEKAC 478 (657)
Q Consensus 400 ~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-d~~~v~~~a~ 478 (657)
.....+| ++|.+...| .|+.+.|-..|+.++.-+++... ..+.++..+++.....|- .|.=+|..+|
T Consensus 650 ~rs~sey---llPLl~Q~l-tD~EE~Viv~aL~~ls~Lik~~l--------l~K~~v~~i~~~v~PlL~hPN~WIR~~~~ 717 (1431)
T KOG1240|consen 650 WRSVSEY---LLPLLQQGL-TDGEEAVIVSALGSLSILIKLGL--------LRKPAVKDILQDVLPLLCHPNLWIRRAVL 717 (1431)
T ss_pred eeeHHHH---HHHHHHHhc-cCcchhhHHHHHHHHHHHHHhcc--------cchHHHHHHHHhhhhheeCchHHHHHHHH
Confidence 3334433 588999999 99999999999999999999643 556777777777777665 3667999999
Q ss_pred HHHHHHHhhccCCCCCCCCCchhHHHHHH
Q 006201 479 GALYFLAQGFEDAISPSSPLTPFFQEIVQ 507 (657)
Q Consensus 479 ~al~~l~~~~~~~~~~~~~l~~~~~~i~~ 507 (657)
..|....+.++.. ...-.+.|++...+.
T Consensus 718 ~iI~~~~~~ls~a-dvyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 718 GIIAAIARQLSAA-DVYCKLMPLIRPFLE 745 (1431)
T ss_pred HHHHHHHhhhhhh-hheEEeehhhHHhhh
Confidence 9999888776542 011224455554444
No 63
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.89 E-value=1.1e-08 Score=79.52 Aligned_cols=93 Identities=16% Similarity=0.129 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHH
Q 006201 383 QREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISV 462 (657)
Q Consensus 383 ~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~ 462 (657)
.|.+++.+|++++.++ .....++++.+++.++..+ .|++++||+.|+.++.++++...+ ..-.+++.+++.
T Consensus 2 ~R~ggli~Laa~ai~l-~~~~~~~l~~Il~pVL~~~-~D~d~rVRy~AcEaL~ni~k~~~~-------~~l~~f~~IF~~ 72 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIAL-GKDISKYLDEILPPVLKCF-DDQDSRVRYYACEALYNISKVARG-------EILPYFNEIFDA 72 (97)
T ss_pred chhHHHHHHHHHHHHc-hHhHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 5899999999999887 4668999999999999999 999999999999999999998864 234589999999
Q ss_pred HHHHccc-chHHHHHHHHHHHHHH
Q 006201 463 LLQSMKD-VPNVAEKACGALYFLA 485 (657)
Q Consensus 463 l~~~l~d-~~~v~~~a~~al~~l~ 485 (657)
|.+.+.| ++.||..| ..|.+++
T Consensus 73 L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 73 LCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHcCCchhHHHHH-HHHHHHh
Confidence 9999998 68888666 5555554
No 64
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=2.7e-06 Score=91.79 Aligned_cols=364 Identities=15% Similarity=0.133 Sum_probs=226.4
Q ss_pred hHHHHHHHHHHHHHHhhhcC-----------CCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccc---hhh
Q 006201 106 HDARSTASQVVAKVAGIELP-----------HKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVE---QDH 171 (657)
Q Consensus 106 ~~vr~~aa~~l~~i~~~~~~-----------~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~---~~~ 171 (657)
+..|..+|..|..++....| .+.-.+++|.+++..+......+ ..+.+............++ .+.
T Consensus 531 ~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~-~~l~~~~~~L~~i~~~~~~~t~~dv 609 (1176)
T KOG1248|consen 531 PELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGR-KILASRSTVLEIIRVDYFTVTPTDV 609 (1176)
T ss_pred hHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCcccc-ccHHHHHHHHHHHHHHHhhcccHHH
Confidence 48888899999888887433 12346788888888765433322 2222222211111011110 122
Q ss_pred HhHHHHHHHhccCCCCCCHHH----HHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHH
Q 006201 172 VNKILTAVVQGMNASESNNDV----RLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAIS 247 (657)
Q Consensus 172 ~~~l~~~l~~~l~~~~~~~~v----r~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~ 247 (657)
...+...+..... +.+..+ +..-+..+..++.+.. +.....++.+.....+..+..+++.++..|..+.
T Consensus 610 ~~~l~~s~~e~as--~~~~s~~~~~~~slLdl~~~~a~~~~-----e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~ 682 (1176)
T KOG1248|consen 610 VGSLKDSAGELAS--DLDESVASFKTLSLLDLLIALAPVQT-----ESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELS 682 (1176)
T ss_pred HHHHHHHHHhHhc--cchhhhhhHHHHHHHHHHHhhhcccc-----chhHHHHHHhhHHhhccccHHHHHHHHHHHHHHh
Confidence 2333333333333 222222 2223333333332211 1111233333333334568899999999999988
Q ss_pred HH--HHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHH
Q 006201 248 ST--YYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLL 325 (657)
Q Consensus 248 ~~--~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 325 (657)
.. ...+...++..+.+.+...++......+...+..|..+.+..+ .....++++.+|.+
T Consensus 683 ~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~-------------------~e~~~~i~k~I~Ev 743 (1176)
T KOG1248|consen 683 SSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLS-------------------AEHCDLIPKLIPEV 743 (1176)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc-------------------HHHHHHHHHHHHHH
Confidence 76 2234556777788888888887777777777877877776421 12233344555554
Q ss_pred HHHhhhhcCccccCCCcchHhhhHHHHHHHHH--hhc---C----CCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhc
Q 006201 326 LETLLKQEEDQDQDEGAWNIAMAGGTCLGLVA--RTV---G----DDIVPLVMPFVEENITKQEWRQREAATYAFGSILE 396 (657)
Q Consensus 326 ~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~--~~~---~----~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~ 396 (657)
+-.++ +.+ -..|..|.+||..++ ..+ | ...+..+++.|..++....-+.+-+.+.+++.+..
T Consensus 744 IL~~K--e~n-------~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~ 814 (1176)
T KOG1248|consen 744 ILSLK--EVN-------VKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ 814 (1176)
T ss_pred HHhcc--ccc-------HHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 43332 111 256888999998888 322 3 22455666677777666655565555888888776
Q ss_pred CCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHH
Q 006201 397 GPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAE 475 (657)
Q Consensus 397 ~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~ 475 (657)
......-..++..++..+...+ ...++.+|.+|...+..++..++.+ ...++.+.+||.++..++| ...+|.
T Consensus 815 e~~~~ld~~~l~~li~~V~~~L-~s~sreI~kaAI~fikvlv~~~pe~------~l~~~~~~LL~sll~ls~d~k~~~r~ 887 (1176)
T KOG1248|consen 815 EFKNILDDETLEKLISMVCLYL-ASNSREIAKAAIGFIKVLVYKFPEE------CLSPHLEELLPSLLALSHDHKIKVRK 887 (1176)
T ss_pred HHhccccHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHcCCHH------HHhhhHHHHHHHHHHHHHhhhHHHHH
Confidence 5422233567889999999999 9999999999999999999988743 4578899999999998887 577888
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhcccc
Q 006201 476 KACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHRED 517 (657)
Q Consensus 476 ~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~ 517 (657)
..-..+..+++.++ ...+.+|++.-.-.++..+....
T Consensus 888 Kvr~LlekLirkfg-----~~eLe~~~pee~~klL~nIRK~r 924 (1176)
T KOG1248|consen 888 KVRLLLEKLIRKFG-----AEELESFLPEEDMKLLTNIRKRR 924 (1176)
T ss_pred HHHHHHHHHHHHhC-----HHHHHhhCHHHHHHHHHHHHHHH
Confidence 88899999999875 46788888877667766665443
No 65
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.87 E-value=3e-06 Score=82.23 Aligned_cols=439 Identities=18% Similarity=0.151 Sum_probs=233.5
Q ss_pred ChHHHHHHHHHHHHHHhhhcC---CCCCchHHHHH---------HHhhcCCChhHHHHHHHHHHHHhhhc----------
Q 006201 105 AHDARSTASQVVAKVAGIELP---HKQWPELIGAL---------LSNIHQLPPHTKQATLETLGYICEEV---------- 162 (657)
Q Consensus 105 ~~~vr~~aa~~l~~i~~~~~~---~~~~~~l~~~l---------~~~l~~~~~~~~~~~l~~l~~i~~~~---------- 162 (657)
...||..+-.++....+.... .+.|.-++|.- .-.++++++..|--|+.++..+....
T Consensus 9 ~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~ 88 (728)
T KOG4535|consen 9 QAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDT 88 (728)
T ss_pred HHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhcc
Confidence 457787777777776654311 15777666652 22356788889999999999887653
Q ss_pred cccccch------hhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHH
Q 006201 163 SSDAVEQ------DHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIR 236 (657)
Q Consensus 163 ~~~~l~~------~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~ 236 (657)
++..++. ..+..+.-.++..+.. +.++.+....++|+.++++..+-.-.+-.+...+.+.+..++...|+.++
T Consensus 89 ~~~~ftpf~v~~a~si~~~~r~l~~~l~~-e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~ 167 (728)
T KOG4535|consen 89 SDHAFTPFSVMIACSIRELHRCLLLALVA-ESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVR 167 (728)
T ss_pred CCcCCCchHHHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChh
Confidence 1222210 1123333344444443 56677888899999998875431111112234566677777788888899
Q ss_pred HHHHHHHHHHHHHHHHhhHHhHHHHHH----------------HHHH---------------------------------
Q 006201 237 QAAFECLVAISSTYYEKLAPYIQDIFN----------------ITAK--------------------------------- 267 (657)
Q Consensus 237 ~~~~~~l~~l~~~~~~~~~~~~~~l~~----------------~~~~--------------------------------- 267 (657)
..++..+..++.... ..|-+...+. -.++
T Consensus 168 vs~l~~~~~~v~t~~--~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~ 245 (728)
T KOG4535|consen 168 VSSLTLLGAIVSTHA--PLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIV 245 (728)
T ss_pred hHHHHHHHHHHhcCC--CCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeee
Confidence 888888888876431 0010000000 0000
Q ss_pred ---------------HHhc--CChHHHHHHHHHHHHHhHHHHH-------hhhhcCCCCCCCCCCc-hhhHHHhhhhhHH
Q 006201 268 ---------------AVRE--DEEPVALQAIEFWSSVCDEEID-------ILEEYGGDFSGDSDIP-CFYFIKHALPVLV 322 (657)
Q Consensus 268 ---------------~~~~--~~~~v~~~a~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~ 322 (657)
+... ....+|..++..+..++....- ..+-.. ...++. ++ .+.+....+.++.
T Consensus 246 ~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~-~~~~~~-~p~~~l~~a~ll~~lg 323 (728)
T KOG4535|consen 246 VLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQAYLMELGRVIC-KCMGEA-DPSIQLHGAKLLEELG 323 (728)
T ss_pred ecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCCC-ChHHHHHHHHHHHHHH
Confidence 0000 0123566676666665553210 000000 000110 01 1122222233333
Q ss_pred HHHHHHhhh-------------------hcCccccCCCcchHhhhHHHHHHHHHhhcCCCc---hhchHHHHHhhhc-Cc
Q 006201 323 PLLLETLLK-------------------QEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDI---VPLVMPFVEENIT-KQ 379 (657)
Q Consensus 323 ~~l~~~l~~-------------------~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~---~~~l~~~l~~~l~-~~ 379 (657)
..+...... +-++.--|-...++..++.+++.++.......+ -....+.+..... +.
T Consensus 324 ~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~ 403 (728)
T KOG4535|consen 324 TGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSK 403 (728)
T ss_pred HHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchH
Confidence 222211110 000000011123444555566666554321111 1123333333333 33
Q ss_pred chhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCcc---CCcccH
Q 006201 380 EWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPI---INQGNC 456 (657)
Q Consensus 380 ~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~---~~~~~~ 456 (657)
+--+|-+|+.+++...-..+......+.......++..+ .|....+|.-++|++|.++..+.... |. ....+.
T Consensus 404 ~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl-~d~~ln~r~KaawtlgnITdAL~~~~---Ps~~s~~eR~s 479 (728)
T KOG4535|consen 404 NRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSL-EDKSLNVRAKAAWSLGNITDALIVNM---PTPDSFQERFS 479 (728)
T ss_pred HHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHh-hhHhHhHHHHHHHHhhhhHHHHHcCC---CCchHHHHHHH
Confidence 456788888888876544333334456677778888888 89899999999999999999875321 21 222334
Q ss_pred HHHHHHHHHHcc----cchHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHH----HHHHhhccccchhhhHHHHHH
Q 006201 457 QQIISVLLQSMK----DVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQ----ALLTVTHREDAGESRLRTAAY 528 (657)
Q Consensus 457 ~~il~~l~~~l~----d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~----~L~~~l~~~~~~~~~~~~~~~ 528 (657)
...+..++..-. |+.+|+.+|..+|+++.+.+.. ...+-+..+++ .+.....-.. ...+|.+++
T Consensus 480 g~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~------i~~~~~~e~~~~~~~~l~~~v~~~~--~~kV~WNaC 551 (728)
T KOG4535|consen 480 GLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQP------IEKPTFAEIIEESIQALISTVLTEA--AMKVRWNAC 551 (728)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHH------hhhccHHHHHHHHHHhcccceeccc--ccccchHHH
Confidence 444444444322 3689999999999999886532 12222333333 2222222222 368899999
Q ss_pred HHHHHHHHhcccc--cHHHHHHHHHHHHHHHHHH
Q 006201 529 ETLNEVVRCSTDE--TAPMVMQLVPLIMMELHQT 560 (657)
Q Consensus 529 ~al~~l~~~~~~~--~~~~~~~l~~~l~~~l~~~ 560 (657)
.++|.+.+.-.-. ..++...+.+.+...+.++
T Consensus 552 ya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~ 585 (728)
T KOG4535|consen 552 YAMGNLFKNPALPLQTAPWASQAFNALTSLVTSC 585 (728)
T ss_pred HHHHHhhcCccccccCCCchHHHHHHHHHHHHHh
Confidence 9999999865432 2356677777777766654
No 66
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.86 E-value=2.3e-05 Score=77.91 Aligned_cols=274 Identities=16% Similarity=0.111 Sum_probs=149.4
Q ss_pred HhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHH
Q 006201 172 VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYY 251 (657)
Q Consensus 172 ~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 251 (657)
..++.|.+-..++ +....|...+.+.+..+.. ++.. +.+.+..++.+..++.......|-+++..|.+++..+|
T Consensus 262 ~~q~rpfL~~wls--~k~emV~lE~Ar~v~~~~~---~nv~-~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P 335 (898)
T COG5240 262 LLQLRPFLNSWLS--DKFEMVFLEAARAVCALSE---ENVG-SQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYP 335 (898)
T ss_pred HHHHHHHHHHHhc--CcchhhhHHHHHHHHHHHH---hccC-HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCC
Confidence 4566666666666 5666777777777776443 2221 22335666777777777888889999999999999888
Q ss_pred HhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHH-HHhh-hh----cCCCCCCCC-----CCc--h---hhHHH
Q 006201 252 EKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEE-IDIL-EE----YGGDFSGDS-----DIP--C---FYFIK 315 (657)
Q Consensus 252 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~-~~~~-~~----~~~~~~~~~-----~~~--~---~~~~~ 315 (657)
+.+.-.-+.+= ..+.+.+..+...|+..+..-+..+ .+.. .. ..+-.+|-. .+. + +.-..
T Consensus 336 ~kv~vcN~evE----sLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~ 411 (898)
T COG5240 336 QKVSVCNKEVE----SLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKL 411 (898)
T ss_pred ceeeecChhHH----HHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHH
Confidence 65431111110 1122333334333433222211111 0000 00 000000000 000 0 00011
Q ss_pred hhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhh
Q 006201 316 HALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSIL 395 (657)
Q Consensus 316 ~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~ 395 (657)
. ++..+...+.. +..+...+++.+++..+.+..|+ .-...+..+.+.+.|-+ .-+-++..|+-++
T Consensus 412 s----~l~FL~~~L~~--------eGg~eFK~~~Vdaisd~~~~~p~-skEraLe~LC~fIEDce--y~~I~vrIL~iLG 476 (898)
T COG5240 412 S----YLDFLGSSLLQ--------EGGLEFKKYMVDAISDAMENDPD-SKERALEVLCTFIEDCE--YHQITVRILGILG 476 (898)
T ss_pred H----HHHHHHHHHHh--------cccchHHHHHHHHHHHHHhhCch-HHHHHHHHHHHHHhhcc--hhHHHHHHHHHhc
Confidence 1 12223332321 23467777777887777766542 11222333444444332 3345677788777
Q ss_pred cCCCCCc--chHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chH
Q 006201 396 EGPSPEK--LVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPN 472 (657)
Q Consensus 396 ~~~~~~~--~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~ 472 (657)
+.. +.. -..|+..++..++ | +|..||.+|..+|++|+-...+ ...-+.+...+.+.++| +..
T Consensus 477 ~Eg-P~a~~P~~yvrhIyNR~i--L---EN~ivRsaAv~aLskf~ln~~d---------~~~~~sv~~~lkRclnD~Dde 541 (898)
T COG5240 477 REG-PRAKTPGKYVRHIYNRLI--L---ENNIVRSAAVQALSKFALNISD---------VVSPQSVENALKRCLNDQDDE 541 (898)
T ss_pred ccC-CCCCCcchHHHHHHHHHH--H---hhhHHHHHHHHHHHHhccCccc---------cccHHHHHHHHHHHhhcccHH
Confidence 643 332 2346666666554 4 6788999999999999887642 22335666777888888 789
Q ss_pred HHHHHHHHHHHHH
Q 006201 473 VAEKACGALYFLA 485 (657)
Q Consensus 473 v~~~a~~al~~l~ 485 (657)
||.+|..++..+-
T Consensus 542 VRdrAsf~l~~~~ 554 (898)
T COG5240 542 VRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999988664
No 67
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.86 E-value=2.5e-07 Score=87.13 Aligned_cols=183 Identities=14% Similarity=0.187 Sum_probs=126.6
Q ss_pred cCCcHHHHHHHHHHHHHHHHHH-----HHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCC
Q 006201 229 LSPEVKIRQAAFECLVAISSTY-----YEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFS 303 (657)
Q Consensus 229 ~~~~~~~~~~~~~~l~~l~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~ 303 (657)
.+.+|+.|..++..|..++... ++.+.+.++.++..+...+.+....+...|+.++..++....
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~----------- 85 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLG----------- 85 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHG-----------
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-----------
Confidence 5689999999999999999876 233344555566666667776666788889988888886531
Q ss_pred CCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhch-HHHHHhhhcCcchh
Q 006201 304 GDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLV-MPFVEENITKQEWR 382 (657)
Q Consensus 304 ~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l-~~~l~~~l~~~~~~ 382 (657)
..+.++++.++|.+++.+.+. .-.+|..|..||..+...++ +.+.+ .+.+.....+.+|.
T Consensus 86 --------~~~~~~~~~~l~~Ll~~~~~~---------~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn~~ 146 (228)
T PF12348_consen 86 --------SHFEPYADILLPPLLKKLGDS---------KKFIREAANNALDAIIESCS--YSPKILLEILSQGLKSKNPQ 146 (228)
T ss_dssp --------GGGHHHHHHHHHHHHHGGG------------HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S-HH
T ss_pred --------HhHHHHHHHHHHHHHHHHccc---------cHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhCCCHH
Confidence 235666778889888877632 13688899999999999776 23334 67777888899999
Q ss_pred hHHHHHHHHHHhhcCCC--CCcchH--HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhc
Q 006201 383 QREAATYAFGSILEGPS--PEKLVP--LVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLH 442 (657)
Q Consensus 383 ~r~aal~~l~~i~~~~~--~~~~~~--~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~ 442 (657)
+|..++.++..+....+ ...+.. .++.+.+.+.+.+ .|+++.||.+|-.++..+...++
T Consensus 147 vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l-~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 147 VREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLL-SDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp HHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHH-TSS-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHCC
Confidence 99999999999887753 133322 3578999999999 99999999999999999988875
No 68
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.85 E-value=0.00037 Score=77.52 Aligned_cols=407 Identities=12% Similarity=0.097 Sum_probs=203.9
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhH
Q 006201 95 SFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNK 174 (657)
Q Consensus 95 ~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~ 174 (657)
..++..+.++...+|..|-.|++.|+..+...-.-|++...+...+.|....+|++|+..++.++-.. ++...+
T Consensus 819 k~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~------~e~~~q 892 (1692)
T KOG1020|consen 819 KLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSI------PELIFQ 892 (1692)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhcc------HHHHHH
Confidence 34566677777899999999999999988322255888888888899999999999999999876655 344466
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHH-HHHHHh
Q 006201 175 ILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAIS-STYYEK 253 (657)
Q Consensus 175 l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~ 253 (657)
.+..+...+. |++..||+.+++.+..+..-.++ |. .+..+.--++.-+.|++..+.+-+++++..+= .-.+..
T Consensus 893 yY~~i~erIl--DtgvsVRKRvIKIlrdic~e~pd-f~---~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~ 966 (1692)
T KOG1020|consen 893 YYDQIIERIL--DTGVSVRKRVIKILRDICEETPD-FS---KIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEV 966 (1692)
T ss_pred HHHHHHhhcC--CCchhHHHHHHHHHHHHHHhCCC-hh---hHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcc
Confidence 6777777777 89999999999999997753322 11 11223222333344444447777777666532 111110
Q ss_pred --hHHh---HHHHHHHHHHH---HhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHH
Q 006201 254 --LAPY---IQDIFNITAKA---VREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLL 325 (657)
Q Consensus 254 --~~~~---~~~l~~~~~~~---~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 325 (657)
...+ +...+..+... +.+..+.. +..+....... ... ++-..+ ...-+...+.-+...+
T Consensus 967 ~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqL----l~~ilk~~~~~-~~~-------~~~~~v-~~~~v~~~~~L~~~cl 1033 (1692)
T KOG1020|consen 967 NDQPAKARKISLEVDVVMSQVDLMNDWLEQL----LDHILKFYLLK-TMK-------ESVKPV-ALAKVTHVLNLLTHCL 1033 (1692)
T ss_pred cccHHHHHhhHHHHHHHHHHHHHhcChHHHH----HHHHHHHHHhh-hhh-------hhhhHH-HHhhcchHHHHHHHHH
Confidence 0011 11111111111 11111111 11111111100 000 000000 0011122222223333
Q ss_pred HHHhhhhcCccccCCCcchHhh-hHHHHHHHHHhhcCCCchhchHHHHHhhhcCc-----chhhHHHHHHHHHHhhcCCC
Q 006201 326 LETLLKQEEDQDQDEGAWNIAM-AGGTCLGLVARTVGDDIVPLVMPFVEENITKQ-----EWRQREAATYAFGSILEGPS 399 (657)
Q Consensus 326 ~~~l~~~~~d~~~d~~~~~~r~-~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~-----~~~~r~aal~~l~~i~~~~~ 399 (657)
...+...+.|+..++. -..|. +...+|-.++...|.-+.+.-+-.+..++.+. +.+.-+..+..+..+..-.
T Consensus 1034 ~~~i~ev~~~~~~~~~-~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv- 1111 (1692)
T KOG1020|consen 1034 VEKISEVESDDMNEEE-SEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLV- 1111 (1692)
T ss_pred HHHHHhhhhHhhhccc-chhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhh-
Confidence 3333333322211121 23343 34566667777666544433333333444332 1233333333344433321
Q ss_pred CCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHcc-------cc--
Q 006201 400 PEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK-------DV-- 470 (657)
Q Consensus 400 ~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-------d~-- 470 (657)
...-..++..+=..+++.+ --.+......|+-|++.++.... ........++....+.+. ++
T Consensus 1112 ~~~sesfL~sLEe~L~~~i-~k~g~a~V~~~vsCl~sl~~k~~--------~~~~~v~~cf~~~~k~le~~k~s~~en~~ 1182 (1692)
T KOG1020|consen 1112 ANPSESFLASLEEDLLKRI-VKMGMATVVEAVSCLGSLATKRT--------DGAKVVKACFSCYLKLLEVIKSSNNENAD 1182 (1692)
T ss_pred ccchHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHhhhc--------cchHHHHHHHHHHHHHHHHHHhccccccc
Confidence 1222344555555566655 33345555667778888887643 223344444444444432 12
Q ss_pred ---hHHHHHHHHHHHHHHhhccCCC--CCCCC----CchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhccc
Q 006201 471 ---PNVAEKACGALYFLAQGFEDAI--SPSSP----LTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD 540 (657)
Q Consensus 471 ---~~v~~~a~~al~~l~~~~~~~~--~~~~~----l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~ 540 (657)
.....+...+++-|++.+.-.. ..+.. .....+.++..|.-..... +..+|..++.++|.+.-.-+.
T Consensus 1183 ~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~---~~~lR~~al~~Lg~~ci~hp~ 1258 (1692)
T KOG1020|consen 1183 IVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDK---DGELRRKALINLGFICIQHPS 1258 (1692)
T ss_pred hhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHhhCch
Confidence 1345677778887777432110 01111 1122333333333333332 368899999999998776664
No 69
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=0.00029 Score=73.43 Aligned_cols=432 Identities=12% Similarity=0.119 Sum_probs=233.1
Q ss_pred hHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccc
Q 006201 87 SSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDA 166 (657)
Q Consensus 87 ~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~ 166 (657)
.+..-.+.+.+-+-|.+++..+.-.|-.+++.|+..+ .-+++.|.+-+.++..++.+|..|+.|...+.+.. |+.
T Consensus 102 qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~E----mardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~-P~l 176 (866)
T KOG1062|consen 102 QDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPE----MARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV-PDL 176 (866)
T ss_pred hHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHH----HhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-chH
Confidence 3455566777777888888777666666677766543 67899999999999999999999999999999988 553
Q ss_pred cchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHH
Q 006201 167 VEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAI 246 (657)
Q Consensus 167 l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l 246 (657)
. +.+++...+.|. +.+..|-.+++..+..++.--++... .++ .+.+ ..+..|..+
T Consensus 177 ~-----e~f~~~~~~lL~--ek~hGVL~~~l~l~~e~c~~~~~~l~--~fr-~l~~---------------~lV~iLk~l 231 (866)
T KOG1062|consen 177 V-----EHFVIAFRKLLC--EKHHGVLIAGLHLITELCKISPDALS--YFR-DLVP---------------SLVKILKQL 231 (866)
T ss_pred H-----HHhhHHHHHHHh--hcCCceeeeHHHHHHHHHhcCHHHHH--HHH-HHHH---------------HHHHHHHHH
Confidence 3 455677777777 56677777777776665543211110 000 1111 112222222
Q ss_pred HHHHH--H-----hhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhh
Q 006201 247 SSTYY--E-----KLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALP 319 (657)
Q Consensus 247 ~~~~~--~-----~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 319 (657)
....+ + .-.|+++--+-.+++.+...+++....--+.+..++... + .+.+...
T Consensus 232 ~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatnt-------------d---sskN~Gn---- 291 (866)
T KOG1062|consen 232 TNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNT-------------D---SSKNAGN---- 291 (866)
T ss_pred hcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcc-------------c---ccccchh----
Confidence 21110 0 012344322222233444444444333333333333210 0 0111111
Q ss_pred hHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCC
Q 006201 320 VLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPS 399 (657)
Q Consensus 320 ~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~ 399 (657)
.|+.-++..+-.... .-..|..|.++|++ .+.+++-..|+-|+..|..++..-
T Consensus 292 AILYE~V~TI~~I~~-------~~~LrvlainiLgk-------------------FL~n~d~NirYvaLn~L~r~V~~d- 344 (866)
T KOG1062|consen 292 AILYECVRTIMDIRS-------NSGLRVLAINILGK-------------------FLLNRDNNIRYVALNMLLRVVQQD- 344 (866)
T ss_pred HHHHHHHHHHHhccC-------CchHHHHHHHHHHH-------------------HhcCCccceeeeehhhHHhhhcCC-
Confidence 122222222221111 12456666666554 445667788999999999888752
Q ss_pred CCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHH
Q 006201 400 PEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKAC 478 (657)
Q Consensus 400 ~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~ 478 (657)
+... ..-=..++.+| +|+++-+|+.|+...-.+... ..+..++..++..|.. ++.++...+
T Consensus 345 ~~av----qrHr~tIleCL-~DpD~SIkrralELs~~lvn~-------------~Nv~~mv~eLl~fL~~~d~~~k~~~a 406 (866)
T KOG1062|consen 345 PTAV----QRHRSTILECL-KDPDVSIKRRALELSYALVNE-------------SNVRVMVKELLEFLESSDEDFKADIA 406 (866)
T ss_pred cHHH----HHHHHHHHHHh-cCCcHHHHHHHHHHHHHHhcc-------------ccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3333 23335678889 999999999999887666553 3456666677776664 577888888
Q ss_pred HHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHH
Q 006201 479 GALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCS-TDETAPMVMQLVPLIMMEL 557 (657)
Q Consensus 479 ~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~-~~~~~~~~~~l~~~l~~~l 557 (657)
.-+..+.+.+.+ .-..|++.++..+ .... .-++..+...+-.++... ++.....+..++-.+....
T Consensus 407 s~I~~laEkfaP------~k~W~idtml~Vl----~~aG---~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~ 473 (866)
T KOG1062|consen 407 SKIAELAEKFAP------DKRWHIDTMLKVL----KTAG---DFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDT 473 (866)
T ss_pred HHHHHHHHhcCC------cchhHHHHHHHHH----Hhcc---cccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhh
Confidence 888888887643 2345666555444 3322 234445566666666666 3333322333333333221
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHh----CCCcchhhHhhHHHHHHHHHHHHHHccc--CCcchhhHHHH
Q 006201 558 HQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKL----GSSEQTKYVFMQYADQMMGLFLRVFAIR--SATAHEEAMLA 631 (657)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~~~~~~~~~~~~~~i~~~l~~~l~~~--~~~v~~~~~~~ 631 (657)
...+ ++. .+...+..|||.-...+ +.+.| ...--+.++..+.+.+... +...+..++.+
T Consensus 474 ~~~i------s~e-----~l~qVa~W~IGEYGdlll~~~~~~~p----~~vtesdivd~l~~v~~~~~s~~~tk~yal~A 538 (866)
T KOG1062|consen 474 LLDI------SQE-----PLLQVASWCIGEYGDLLLDGANEEEP----IKVTESDIVDKLEKVLMSHSSDSTTKGYALTA 538 (866)
T ss_pred hhhh------hhh-----hHHHHHHHHhhhhhHHhhcCccccCC----CcCCHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 1111 111 23336778888655222 22221 1111123444444444331 34456666666
Q ss_pred HHHHHHHhch
Q 006201 632 IGALAYATGL 641 (657)
Q Consensus 632 l~~l~~~~g~ 641 (657)
+-.|...++.
T Consensus 539 l~KLSsr~~s 548 (866)
T KOG1062|consen 539 LLKLSSRFHS 548 (866)
T ss_pred HHHHHhhccc
Confidence 6655554443
No 70
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.77 E-value=1e-05 Score=83.02 Aligned_cols=200 Identities=18% Similarity=0.185 Sum_probs=142.6
Q ss_pred chHhhhHHHHHHHHHhhcC-CCchhchHHHHHhhh-cCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcC
Q 006201 343 WNIAMAGGTCLGLVARTVG-DDIVPLVMPFVEENI-TKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQ 420 (657)
Q Consensus 343 ~~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l-~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~ 420 (657)
...|..+.+++..+...++ ++.+..++..+...+ .......|..++..+..++++.- -...+....++..++..+ .
T Consensus 204 ~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv-~R~~~~~~~~~~~L~~lL-~ 281 (415)
T PF12460_consen 204 EFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALV-MRGHPLATELLDKLLELL-S 281 (415)
T ss_pred hHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHH-HcCCchHHHHHHHHHHHh-C
Confidence 4678889999999999874 334444444444444 33345666777777766665531 112244556677788888 5
Q ss_pred CCcHHHHHHHHHHHHHHHhhhccCcCC---C----ccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCC
Q 006201 421 DPNNHVKDTTAWTLGRMFEFLHGSTLE---T----PIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAI 492 (657)
Q Consensus 421 d~~~~vr~~a~~~l~~l~~~~~~~~~~---~----~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~ 492 (657)
| +.+...+...++-+..... .... | +.....++..++|.+++..++ +...+.+-..||..+++.+
T Consensus 282 ~--~~~g~~aA~~f~il~~d~~-~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~v---- 354 (415)
T PF12460_consen 282 S--PELGQQAAKAFGILLSDSD-DVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNV---- 354 (415)
T ss_pred C--hhhHHHHHHHHhhHhcCcH-HhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhC----
Confidence 5 7778888888887776532 1110 0 123456788999999999886 4457888889999999874
Q ss_pred CCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Q 006201 493 SPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMM 555 (657)
Q Consensus 493 ~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~ 555 (657)
+...+.++++.++|.+++.+.-.+ ..++..+++++..+++..++.+.+|+..++|.+++
T Consensus 355 -P~~vl~~~l~~LlPLLlqsL~~~~---~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 355 -PKSVLLPELPTLLPLLLQSLSLPD---ADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred -CHHHHHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 456788999999999999997664 56888999999999999987788888888887765
No 71
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.76 E-value=1.8e-07 Score=88.01 Aligned_cols=183 Identities=19% Similarity=0.281 Sum_probs=127.0
Q ss_pred CcchHhhhHHHHHHHHHhhc-CCCchhchH-------HHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHH
Q 006201 341 GAWNIAMAGGTCLGLVARTV-GDDIVPLVM-------PFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALN 412 (657)
Q Consensus 341 ~~~~~r~~a~~~L~~l~~~~-~~~~~~~l~-------~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~ 412 (657)
.+|+.|..|..-|..+.... +....+.++ ..+...+.|....+...|+.+++.++... ...+.+++..++|
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l-~~~~~~~~~~~l~ 97 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL-GSHFEPYADILLP 97 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH-GGGGHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hHhHHHHHHHHHH
Confidence 45999999999999998765 333333333 34445566666778888999999999877 4668999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHH-HHHHHHHccc-chHHHHHHHHHHHHHHhhccC
Q 006201 413 FMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQI-ISVLLQSMKD-VPNVAEKACGALYFLAQGFED 490 (657)
Q Consensus 413 ~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~i-l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~ 490 (657)
.+++.+ .|.+..+|.+|..++..++..++ +...+ .+.+..+..+ ++.+|..++..+..+++..+.
T Consensus 98 ~Ll~~~-~~~~~~i~~~a~~~L~~i~~~~~------------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 98 PLLKKL-GDSKKFIREAANNALDAIIESCS------------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp HHHHGG-G---HHHHHHHHHHHHHHHTTS-------------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred HHHHHH-ccccHHHHHHHHHHHHHHHHHCC------------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence 999999 99999999999999999998763 22444 6666667776 799999999999999987541
Q ss_pred CCCCCCCCch--hHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccH
Q 006201 491 AISPSSPLTP--FFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETA 543 (657)
Q Consensus 491 ~~~~~~~l~~--~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~ 543 (657)
....+.. .++.+.+.+...+.+.+ ..+|..+-.++..+.+..|+...
T Consensus 165 ---~~~~l~~~~~~~~l~~~l~~~l~D~~---~~VR~~Ar~~~~~l~~~~~~~a~ 213 (228)
T PF12348_consen 165 ---DSSVLQKSAFLKQLVKALVKLLSDAD---PEVREAARECLWALYSHFPERAE 213 (228)
T ss_dssp -----GGG--HHHHHHHHHHHHHHHTSS----HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred ---hHhhhcccchHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHHHCCHhhc
Confidence 1233433 46889999999999885 78999999999999888886433
No 72
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=0.00026 Score=72.65 Aligned_cols=253 Identities=15% Similarity=0.222 Sum_probs=157.2
Q ss_pred HHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcC
Q 006201 220 IMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYG 299 (657)
Q Consensus 220 il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~ 299 (657)
+-+-++.++....+-+|+.++-.+.++...||+-+.+.++.+. ..+.++|+.|...|..++..++...|
T Consensus 145 La~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~----EkLeDpDp~V~SAAV~VICELArKnP------- 213 (877)
T KOG1059|consen 145 LADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLV----EKLEDPDPSVVSAAVSVICELARKNP------- 213 (877)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHH----HhccCCCchHHHHHHHHHHHHHhhCC-------
Confidence 4444455566677899999999999999999988777555544 57889999999999977666665321
Q ss_pred CCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcC--CCchhchHHHHHhhhc
Q 006201 300 GDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVG--DDIVPLVMPFVEENIT 377 (657)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~--~~~~~~l~~~l~~~l~ 377 (657)
.+|+ .+-|.+++.|+... .+|-+ ...+.-++...+ ...-..+++-+.+.+.
T Consensus 214 -----------knyL-----~LAP~ffkllttSs-------NNWmL----IKiiKLF~aLtplEPRLgKKLieplt~li~ 266 (877)
T KOG1059|consen 214 -----------QNYL-----QLAPLFYKLLVTSS-------NNWVL----IKLLKLFAALTPLEPRLGKKLIEPITELME 266 (877)
T ss_pred -----------cccc-----cccHHHHHHHhccC-------CCeeh----HHHHHHHhhccccCchhhhhhhhHHHHHHH
Confidence 1222 35677777776432 34732 233333333221 1222334444444444
Q ss_pred Ccc-hhhHHHHHHHHH--HhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcc
Q 006201 378 KQE-WRQREAATYAFG--SILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQG 454 (657)
Q Consensus 378 ~~~-~~~r~aal~~l~--~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 454 (657)
+.. -..-+.++.++- ++..|.+ + -..-+.-.+..+-..+ .|.++.+++-++.+++.+.+..+ .
T Consensus 267 sT~AmSLlYECvNTVVa~s~s~g~~-d-~~asiqLCvqKLr~fi-edsDqNLKYlgLlam~KI~ktHp-----------~ 332 (877)
T KOG1059|consen 267 STVAMSLLYECVNTVVAVSMSSGMS-D-HSASIQLCVQKLRIFI-EDSDQNLKYLGLLAMSKILKTHP-----------K 332 (877)
T ss_pred hhHHHHHHHHHHHHheeehhccCCC-C-cHHHHHHHHHHHhhhh-hcCCccHHHHHHHHHHHHhhhCH-----------H
Confidence 332 122222332222 2223321 1 1223444556666677 89999999999999999988653 3
Q ss_pred cHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHH
Q 006201 455 NCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNE 533 (657)
Q Consensus 455 ~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~ 533 (657)
.+..--..++++|.| ++.+|.+|...+.-++.. ..+.+|+..|+..+...+. ...|. +.+..
T Consensus 333 ~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk------------kNl~eIVk~LM~~~~~ae~--t~yrd---ell~~ 395 (877)
T KOG1059|consen 333 AVQAHKDLILRCLDDKDESIRLRALDLLYGMVSK------------KNLMEIVKTLMKHVEKAEG--TNYRD---ELLTR 395 (877)
T ss_pred HHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhh------------hhHHHHHHHHHHHHHhccc--hhHHH---HHHHH
Confidence 445555678889988 789999999999888763 4667777777777766552 34443 45556
Q ss_pred HHHhcccc
Q 006201 534 VVRCSTDE 541 (657)
Q Consensus 534 l~~~~~~~ 541 (657)
+++.+..+
T Consensus 396 II~iCS~s 403 (877)
T KOG1059|consen 396 IISICSQS 403 (877)
T ss_pred HHHHhhhh
Confidence 77766654
No 73
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.69 E-value=0.0003 Score=78.20 Aligned_cols=431 Identities=12% Similarity=0.098 Sum_probs=225.9
Q ss_pred CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhh
Q 006201 127 KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGF 206 (657)
Q Consensus 127 ~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~ 206 (657)
..+..++..|+..+..+...+|-.|++|++.+++.- |..+..+.+ -..+-.-+. |.+..||.+|++.++.++.+
T Consensus 812 ~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~D-p~vL~~~dv---q~~Vh~R~~--DssasVREAaldLvGrfvl~ 885 (1692)
T KOG1020|consen 812 QSFDPYLKLILSVLGENAIALRTKALKCLSMIVEAD-PSVLSRPDV---QEAVHGRLN--DSSASVREAALDLVGRFVLS 885 (1692)
T ss_pred HhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcC-hHhhcCHHH---HHHHHHhhc--cchhHHHHHHHHHHhhhhhc
Confidence 467788888999899888899999999999998854 555533322 223344555 89999999999999998765
Q ss_pred chhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006201 207 AQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSS 286 (657)
Q Consensus 207 ~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~ 286 (657)
.++. ...+.+.+..-..|....||+.+++.+..++..+|++ +.+..++--++..+.|++..+...+.+.+..
T Consensus 886 ~~e~------~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf--~~i~~~cakmlrRv~DEEg~I~kLv~etf~k 957 (1692)
T KOG1020|consen 886 IPEL------IFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDF--SKIVDMCAKMLRRVNDEEGNIKKLVRETFLK 957 (1692)
T ss_pred cHHH------HHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCCh--hhHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 4432 2345555666666788999999999999999988764 2334444445555666666677766654333
Q ss_pred HhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchh
Q 006201 287 VCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVP 366 (657)
Q Consensus 287 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~ 366 (657)
+= +.+... ...-.... .-++....... .+. ..+....+
T Consensus 958 lW---------F~p~~~-------~~d~~~~~-~kI~~~~~vv~--------------------~~~-----d~~~~~~e 995 (1692)
T KOG1020|consen 958 LW---------FTPVPE-------VNDQPAKA-RKISLEVDVVM--------------------SQV-----DLMNDWLE 995 (1692)
T ss_pred Hh---------ccCCCc-------ccccHHHH-HhhHHHHHHHH--------------------HHH-----HHhcChHH
Confidence 21 000000 00000000 11111111000 000 00111111
Q ss_pred chHHH-HHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHH-----HHHHHHHHHHHhcCCCcHHHHH-HHHHHHHHHHh
Q 006201 367 LVMPF-VEENITKQEWRQREAATYAFGSILEGPSPEKLVPL-----VNIALNFMLTALMQDPNNHVKD-TTAWTLGRMFE 439 (657)
Q Consensus 367 ~l~~~-l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~-----~~~i~~~l~~~l~~d~~~~vr~-~a~~~l~~l~~ 439 (657)
.++.. +..... . +...+...++..+. .-.... ...+...--... .+.+..+|. +.+.+|..|++
T Consensus 996 qLl~~ilk~~~~----~---~~~~~~~~v~~~~v-~~~~~L~~~cl~~~i~ev~~~~~-~~~~~~~~~~~~lstL~~Fsk 1066 (1692)
T KOG1020|consen 996 QLLDHILKFYLL----K---TMKESVKPVALAKV-THVLNLLTHCLVEKISEVESDDM-NEEESEVRLLAYLSTLFVFSK 1066 (1692)
T ss_pred HHHHHHHHHHHh----h---hhhhhhhHHHHhhc-chHHHHHHHHHHHHHHhhhhHhh-hcccchhHHHHHHHHHHHHHh
Confidence 11111 111100 0 00111111111110 000000 011111000012 334444554 55677778888
Q ss_pred hhccCcCCCccCCcccHHHHHHHHHHHccc--chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhcccc
Q 006201 440 FLHGSTLETPIINQGNCQQIISVLLQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHRED 517 (657)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~ 517 (657)
..++ .....|...+.|.|...-+. ...+-...+..+...+.-.. ..=..|+..+=+.|+..+-..+
T Consensus 1067 irP~------Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~------~~sesfL~sLEe~L~~~i~k~g 1134 (1692)
T KOG1020|consen 1067 IRPQ------LLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVA------NPSESFLASLEEDLLKRIVKMG 1134 (1692)
T ss_pred cCch------hccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhc------cchHHHHHHHHHHHHHHHHhcc
Confidence 7652 12337888888888765322 23444444555554444321 2224577788888888887765
Q ss_pred chhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 006201 518 AGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQ 597 (657)
Q Consensus 518 ~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 597 (657)
......+..|+++++....+.+. .+..+...+++.+...-.+. ..+-+......++ +.+-++|.+++...-..+
T Consensus 1135 ---~a~V~~~vsCl~sl~~k~~~~~~-~v~~cf~~~~k~le~~k~s~-~en~~~~~~p~l~-RsiftlG~l~Ryfdf~~~ 1208 (1692)
T KOG1020|consen 1135 ---MATVVEAVSCLGSLATKRTDGAK-VVKACFSCYLKLLEVIKSSN-NENADIVNFPKLQ-RSIFTLGLLSRYFDFPKP 1208 (1692)
T ss_pred ---hHHHHHHHHHHHHHHhhhccchH-HHHHHHHHHHHHHHHHHhcc-ccccchhhhHHHH-HHHHHHHHHHHhccCCCc
Confidence 34445788999999987554332 34444445555554321110 0011111112233 578899999996533221
Q ss_pred hh--hHhhH----HHHHHHHHHHHHHcccCCcchhhHHHHHHHHHHHhc
Q 006201 598 TK--YVFMQ----YADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATG 640 (657)
Q Consensus 598 ~~--~~~~~----~~~~i~~~l~~~l~~~~~~v~~~~~~~l~~l~~~~g 640 (657)
.. ..+.+ ..+.++..++-..+..+.++|..|+..+|.++-.-.
T Consensus 1209 ~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp 1257 (1692)
T KOG1020|consen 1209 SNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHP 1257 (1692)
T ss_pred cCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCc
Confidence 10 00222 234445555555555678899999999999986544
No 74
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=3.2e-06 Score=79.12 Aligned_cols=382 Identities=15% Similarity=0.141 Sum_probs=224.3
Q ss_pred CCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhc
Q 006201 103 SPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQG 182 (657)
Q Consensus 103 ~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~ 182 (657)
+++-...+.++.+.+.+.....- ..-.+...-+...+++.++.++..+...++.++-......+ -..+..+=+.+.+.
T Consensus 58 SDnlnlqrsaalafAeitek~vr-~Vsres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~l-iv~l~Gl~~Li~qm 135 (550)
T KOG4224|consen 58 SDNLNLQRSAALAFAEITEKGVR-RVSRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGL-IVSLLGLDLLILQM 135 (550)
T ss_pred ccccccchHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceE-EEeccChHHHHHHh
Confidence 33445556677777777666532 12344555566677888999988888888877665532222 12233334455666
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhH-HHH
Q 006201 183 MNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYI-QDI 261 (657)
Q Consensus 183 l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l 261 (657)
+. ++.++|..+++|+.+++.+-+.... ..+.--+..+.++.+..+..++..+...|..+-..+.. -...+ ..-
T Consensus 136 mt---d~vevqcnaVgCitnLaT~d~nk~k--iA~sGaL~pltrLakskdirvqrnatgaLlnmThs~En-Rr~LV~aG~ 209 (550)
T KOG4224|consen 136 MT---DGVEVQCNAVGCITNLATFDSNKVK--IARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSREN-RRVLVHAGG 209 (550)
T ss_pred cC---CCcEEEeeehhhhhhhhccccchhh--hhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhh-hhhhhccCC
Confidence 55 5678899999999998876221110 11112234445566677788888888888776543321 11222 245
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCC
Q 006201 262 FNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEG 341 (657)
Q Consensus 262 ~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~ 341 (657)
++++...++..+.+++..+...++.++-+.. ..+.....=++++|.++..|...
T Consensus 210 lpvLVsll~s~d~dvqyycttaisnIaVd~~-----------------~Rk~Laqaep~lv~~Lv~Lmd~~--------- 263 (550)
T KOG4224|consen 210 LPVLVSLLKSGDLDVQYYCTTAISNIAVDRR-----------------ARKILAQAEPKLVPALVDLMDDG--------- 263 (550)
T ss_pred chhhhhhhccCChhHHHHHHHHhhhhhhhHH-----------------HHHHHHhcccchHHHHHHHHhCC---------
Confidence 6777788888999999999988888875432 11222333356788887766422
Q ss_pred cchHhhhHHHHHHHHHhhcC-------CCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHH-HHHHHH
Q 006201 342 AWNIAMAGGTCLGLVARTVG-------DDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNF 413 (657)
Q Consensus 342 ~~~~r~~a~~~L~~l~~~~~-------~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~-~~i~~~ 413 (657)
+-.+.-.|..+|..++.--. ..-+|.++ +.++++.-...-+.+.|+..|+-....+.. .. ...+..
T Consensus 264 s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv----~Llqs~~~plilasVaCIrnisihplNe~l--I~dagfl~p 337 (550)
T KOG4224|consen 264 SDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLV----ELLQSPMGPLILASVACIRNISIHPLNEVL--IADAGFLRP 337 (550)
T ss_pred ChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHH----HHHhCcchhHHHHHHHHHhhcccccCcccc--eecccchhH
Confidence 12556667788887765321 12344444 444666656667788888766544211111 11 123455
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCC
Q 006201 414 MLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAI 492 (657)
Q Consensus 414 l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~ 492 (657)
++..|....+..++-.|..++-.++...... ...-+-...+|.+...+.| ...||.....++..+.-+-.+
T Consensus 338 LVrlL~~~dnEeiqchAvstLrnLAasse~n------~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~-- 409 (550)
T KOG4224|consen 338 LVRLLRAGDNEEIQCHAVSTLRNLAASSEHN------VSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDND-- 409 (550)
T ss_pred HHHHHhcCCchhhhhhHHHHHHHHhhhhhhh------hHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcccc--
Confidence 6666634467778988988888887743210 1111224567888888777 456766555555544422110
Q ss_pred CCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcc
Q 006201 493 SPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCST 539 (657)
Q Consensus 493 ~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~ 539 (657)
+..+.. ..+++.|...+.+.+ ..++-++..+|..+-+...
T Consensus 410 --k~~lld--~gi~~iLIp~t~s~s---~Ev~gNaAaAL~Nlss~v~ 449 (550)
T KOG4224|consen 410 --KEALLD--SGIIPILIPWTGSES---EEVRGNAAAALINLSSDVE 449 (550)
T ss_pred --HHHHhh--cCCcceeecccCccc---hhhcccHHHHHHhhhhhhH
Confidence 111111 145666666666543 5777788888888766553
No 75
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=2e-06 Score=80.53 Aligned_cols=387 Identities=13% Similarity=0.081 Sum_probs=230.4
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHhhhcCCC---CCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhH
Q 006201 96 FILKTLSSPAHDARSTASQVVAKVAGIELPHK---QWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHV 172 (657)
Q Consensus 96 ~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~---~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~ 172 (657)
.++..+.+.++.+...++.+++.+|....... ....+=+.+.+..++ ...++..+..|+..++..- .....-...
T Consensus 89 pvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~d-~nk~kiA~s 166 (550)
T KOG4224|consen 89 PVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD-GVEVQCNAVGCITNLATFD-SNKVKIARS 166 (550)
T ss_pred HHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC-CcEEEeeehhhhhhhhccc-cchhhhhhc
Confidence 45667888999999999999999988764322 334554566666555 4456667888888887653 221111223
Q ss_pred hHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHH-----HHHHHHhhccCCcHHHHHHHHHHHHHHH
Q 006201 173 NKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDY-----IMRVVCEATLSPEVKIRQAAFECLVAIS 247 (657)
Q Consensus 173 ~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~-----il~~l~~~~~~~~~~~~~~~~~~l~~l~ 247 (657)
..+.|. ....+ ..+..+|..+..+|.++...- + .+.. -++.+..++...+.+++..++..++.++
T Consensus 167 GaL~pl-trLak--skdirvqrnatgaLlnmThs~-E------nRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIa 236 (550)
T KOG4224|consen 167 GALEPL-TRLAK--SKDIRVQRNATGALLNMTHSR-E------NRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIA 236 (550)
T ss_pred cchhhh-Hhhcc--cchhhHHHHHHHHHHHhhhhh-h------hhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhh
Confidence 333333 33334 567788999999988864321 1 1122 3567788888899999999999998887
Q ss_pred HHHH--HhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhh-hHHHH
Q 006201 248 STYY--EKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALP-VLVPL 324 (657)
Q Consensus 248 ~~~~--~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~~ 324 (657)
-... +.+...-+.+++.+...+.+.++.++.+|--.+..++... .|..++.+ .-+|.
T Consensus 237 Vd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt--------------------~Yq~eiv~ag~lP~ 296 (550)
T KOG4224|consen 237 VDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT--------------------EYQREIVEAGSLPL 296 (550)
T ss_pred hhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc--------------------hhhhHHHhcCCchH
Confidence 5432 3334444568888888999999999999887777777532 11111111 12344
Q ss_pred HHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCC-------CchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcC
Q 006201 325 LLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD-------DIVPLVMPFVEENITKQEWRQREAATYAFGSILEG 397 (657)
Q Consensus 325 l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~-------~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~ 397 (657)
+++.++.+ .-..-.+...|+..++-.-+. .++.+++.++.. .++...+..|...|..++.+
T Consensus 297 lv~Llqs~---------~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~---~dnEeiqchAvstLrnLAas 364 (550)
T KOG4224|consen 297 LVELLQSP---------MGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRA---GDNEEIQCHAVSTLRNLAAS 364 (550)
T ss_pred HHHHHhCc---------chhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhc---CCchhhhhhHHHHHHHHhhh
Confidence 44444311 001111233455555543332 223333333321 23345778888888888865
Q ss_pred CCCCcchHHHH-HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccH--HHHHHHHHHHccc-chHH
Q 006201 398 PSPEKLVPLVN-IALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNC--QQIISVLLQSMKD-VPNV 473 (657)
Q Consensus 398 ~~~~~~~~~~~-~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~--~~il~~l~~~l~d-~~~v 473 (657)
. ......+.. ..+|.+...+ -|....||....-|+.+++-.-. .+.++ ..++|.|+..+.+ +.+|
T Consensus 365 s-e~n~~~i~esgAi~kl~eL~-lD~pvsvqseisac~a~Lal~d~---------~k~~lld~gi~~iLIp~t~s~s~Ev 433 (550)
T KOG4224|consen 365 S-EHNVSVIRESGAIPKLIELL-LDGPVSVQSEISACIAQLALNDN---------DKEALLDSGIIPILIPWTGSESEEV 433 (550)
T ss_pred h-hhhhHHHhhcCchHHHHHHH-hcCChhHHHHHHHHHHHHHhccc---------cHHHHhhcCCcceeecccCccchhh
Confidence 3 233333332 3577888888 89999999888888888776432 12222 4567888887776 6899
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhccc
Q 006201 474 AEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD 540 (657)
Q Consensus 474 ~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~ 540 (657)
|.+|+.||.+|++..++..-..+.+..-...+-..|.+.+.+.+ ...+..+..++..+++....
T Consensus 434 ~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~---~tf~hia~wTI~qLle~h~~ 497 (550)
T KOG4224|consen 434 RGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHE---LTFRHIARWTIQQLLEDHDL 497 (550)
T ss_pred cccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHhCCc
Confidence 99999999999976432100000000011344445555555443 34454555666666665543
No 76
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=0.00019 Score=72.93 Aligned_cols=267 Identities=16% Similarity=0.165 Sum_probs=160.8
Q ss_pred HHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhh
Q 006201 217 RDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILE 296 (657)
Q Consensus 217 ~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~ 296 (657)
+......+..+..+.++.||..+++.|..+.+.+ ..-..+.....+.+.|.++.||..|+..+...+..-+...
T Consensus 196 ~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~- 269 (823)
T KOG2259|consen 196 REHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPL- 269 (823)
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcc-
Confidence 3456666777778889999999999999887621 1112355555667888899999988765544443211000
Q ss_pred hcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHH-----
Q 006201 297 EYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPF----- 371 (657)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~----- 371 (657)
+.+++ ........+.+++. .+. |.+|.+|..|+++|+.+-....+-+...+-..
T Consensus 270 ----e~e~~----e~kl~D~aF~~vC~----~v~---------D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~l 328 (823)
T KOG2259|consen 270 ----ERESE----EEKLKDAAFSSVCR----AVR---------DRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRL 328 (823)
T ss_pred ----cchhh----hhhhHHHHHHHHHH----HHh---------cCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhh
Confidence 00000 01122222222222 222 24577777777777666543221111111110
Q ss_pred -------------------------------------------------HHhhhcCcchhhHHHHHHHHHHhhcCCCCCc
Q 006201 372 -------------------------------------------------VEENITKQEWRQREAATYAFGSILEGPSPEK 402 (657)
Q Consensus 372 -------------------------------------------------l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~ 402 (657)
+...+.|.-..+|.||+..++.++.+. +..
T Consensus 329 RRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss-P~F 407 (823)
T KOG2259|consen 329 RRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS-PGF 407 (823)
T ss_pred hhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC-CCc
Confidence 111223334678999999999999763 333
Q ss_pred chHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHH
Q 006201 403 LVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGAL 481 (657)
Q Consensus 403 ~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al 481 (657)
-...+..++..+ +|+...||.-|.+++..++..+. .. +..++.++..|.| ++.+|.+.-..|
T Consensus 408 ----A~~aldfLvDMf-NDE~~~VRL~ai~aL~~Is~~l~--------i~----eeql~~il~~L~D~s~dvRe~l~elL 470 (823)
T KOG2259|consen 408 ----AVRALDFLVDMF-NDEIEVVRLKAIFALTMISVHLA--------IR----EEQLRQILESLEDRSVDVREALRELL 470 (823)
T ss_pred ----HHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhe--------ec----HHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 344567788888 99999999999999999998864 34 4555666677777 678887665555
Q ss_pred HHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhccccc
Q 006201 482 YFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDET 542 (657)
Q Consensus 482 ~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~ 542 (657)
+.. + + .-..-+...+..++..+.... .-|..++.|++.+.+..+..+
T Consensus 471 ~~~-~-~--------~d~~~i~m~v~~lL~~L~kyP----qDrd~i~~cm~~iGqnH~~lv 517 (823)
T KOG2259|consen 471 KNA-R-V--------SDLECIDMCVAHLLKNLGKYP----QDRDEILRCMGRIGQNHRRLV 517 (823)
T ss_pred Hhc-C-C--------CcHHHHHHHHHHHHHHhhhCC----CCcHHHHHHHHHHhccChhhH
Confidence 421 1 1 113466777788888887653 224467778877777666433
No 77
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.54 E-value=0.0004 Score=71.42 Aligned_cols=222 Identities=14% Similarity=0.210 Sum_probs=148.8
Q ss_pred HHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHc-
Q 006201 389 YAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSM- 467 (657)
Q Consensus 389 ~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l- 467 (657)
..+.++..+.+++...+....++..++....+..++..|..++.+++.+..-+++ .+.+..++..+...+
T Consensus 169 ~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~---------~~~l~~~l~~~~~~~~ 239 (415)
T PF12460_consen 169 ILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPD---------DDDLDEFLDSLLQSIS 239 (415)
T ss_pred HHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCC---------hhhHHHHHHHHHhhhc
Confidence 3344444444444333445556666666542556699999999999988887542 336677777777766
Q ss_pred c-cchHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhccc------
Q 006201 468 K-DVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD------ 540 (657)
Q Consensus 468 ~-d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~------ 540 (657)
. ..+..+..+...+.-+.+.+-- -..|....++..|+..+.+. .+...+.++++.++.-.+.
T Consensus 240 ~~~~~~~~~~~~~~~~Wi~KaLv~------R~~~~~~~~~~~L~~lL~~~-----~~g~~aA~~f~il~~d~~~~l~~~~ 308 (415)
T PF12460_consen 240 SSEDSELRPQALEILIWITKALVM------RGHPLATELLDKLLELLSSP-----ELGQQAAKAFGILLSDSDDVLNKEN 308 (415)
T ss_pred ccCCcchhHHHHHHHHHHHHHHHH------cCCchHHHHHHHHHHHhCCh-----hhHHHHHHHHhhHhcCcHHhcCccc
Confidence 2 2344444444444444433211 12377788888888888764 3445677888888776331
Q ss_pred --c-----cHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHH
Q 006201 541 --E-----TAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLF 613 (657)
Q Consensus 541 --~-----~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l 613 (657)
. -+.++..++|.+++.++.. ++ ..|...+..++.+.+.+.+.- ..++++.+++.+
T Consensus 309 ~a~vklLykQR~F~~~~p~L~~~~~~~-------~~------~~k~~yL~ALs~ll~~vP~~v-----l~~~l~~LlPLL 370 (415)
T PF12460_consen 309 HANVKLLYKQRFFTQVLPKLLEGFKEA-------DD------EIKSNYLTALSHLLKNVPKSV-----LLPELPTLLPLL 370 (415)
T ss_pred cchhhhHHhHHHHHHHHHHHHHHHhhc-------Ch------hhHHHHHHHHHHHHhhCCHHH-----HHHHHHHHHHHH
Confidence 1 2246777788877766652 11 135567889999999888763 779999999999
Q ss_pred HHHHcccCCcchhhHHHHHHHHHHHhchhhhhccc
Q 006201 614 LRVFAIRSATAHEEAMLAIGALAYATGLCHHRRCC 648 (657)
Q Consensus 614 ~~~l~~~~~~v~~~~~~~l~~l~~~~g~~f~~y~~ 648 (657)
++.|..++.+++..++.++..++.--..-+.+|+.
T Consensus 371 lqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~ 405 (415)
T PF12460_consen 371 LQSLSLPDADVLLSSLETLKMILEEAPELISEHLS 405 (415)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 99999988899999999999998876666666654
No 78
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.50 E-value=4.5e-07 Score=70.48 Aligned_cols=90 Identities=22% Similarity=0.280 Sum_probs=76.5
Q ss_pred HhhhHHHHHHHHHhhcCC---CchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCC
Q 006201 345 IAMAGGTCLGLVARTVGD---DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQD 421 (657)
Q Consensus 345 ~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d 421 (657)
.|+.+.-+|..++-.++. ..++.+++.+...+.|++|++|+.|+-+|..++... ...+.+++.++++.+.+.+ .|
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~-~~~~l~~f~~IF~~L~kl~-~D 79 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVA-RGEILPYFNEIFDALCKLS-AD 79 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-cC
Confidence 477888889888888875 457788888889999999999999999999999876 4667789999999999999 99
Q ss_pred CcHHHHHHHHHHHHHH
Q 006201 422 PNNHVKDTTAWTLGRM 437 (657)
Q Consensus 422 ~~~~vr~~a~~~l~~l 437 (657)
+++.||.+|. .|-++
T Consensus 80 ~d~~Vr~~a~-~Ld~l 94 (97)
T PF12755_consen 80 PDENVRSAAE-LLDRL 94 (97)
T ss_pred CchhHHHHHH-HHHHH
Confidence 9999999984 44443
No 79
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.48 E-value=9.8e-05 Score=73.60 Aligned_cols=293 Identities=14% Similarity=0.151 Sum_probs=172.7
Q ss_pred hHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccc
Q 006201 87 SSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDA 166 (657)
Q Consensus 87 ~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~ 166 (657)
++...++|+.|-.++.+.-+.|.-.+|.++..++............+..|...+++.....|.+|+++|.+++-.. |+.
T Consensus 259 ~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~-P~k 337 (898)
T COG5240 259 SQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKY-PQK 337 (898)
T ss_pred hHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhC-Cce
Confidence 4555667777777788777788888888888888765332345556667777788899999999999999998877 665
Q ss_pred cc--hhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHH
Q 006201 167 VE--QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLV 244 (657)
Q Consensus 167 l~--~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~ 244 (657)
.. ...++.+ ++ |.+-.+-..|+.+|.. - ..+...+.+++.+..++.+-+...+..+++++.
T Consensus 338 v~vcN~evEsL-------Is--d~Nr~IstyAITtLLK---T-----Gt~e~idrLv~~I~sfvhD~SD~FKiI~ida~r 400 (898)
T COG5240 338 VSVCNKEVESL-------IS--DENRTISTYAITTLLK---T-----GTEETIDRLVNLIPSFVHDMSDGFKIIAIDALR 400 (898)
T ss_pred eeecChhHHHH-------hh--cccccchHHHHHHHHH---c-----CchhhHHHHHHHHHHHHHhhccCceEEeHHHHH
Confidence 41 1222222 23 5555555555555443 1 111223556666666665555566677888888
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHH
Q 006201 245 AISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPL 324 (657)
Q Consensus 245 ~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 324 (657)
.+.-.+|..-..++.-+...+. +...-+.+..+++.++...+..|+.. + ..+..
T Consensus 401 sLsl~Fp~k~~s~l~FL~~~L~---~eGg~eFK~~~Vdaisd~~~~~p~sk-------------------E----raLe~ 454 (898)
T COG5240 401 SLSLLFPSKKLSYLDFLGSSLL---QEGGLEFKKYMVDAISDAMENDPDSK-------------------E----RALEV 454 (898)
T ss_pred HHHhhCcHHHHHHHHHHHHHHH---hcccchHHHHHHHHHHHHHhhCchHH-------------------H----HHHHH
Confidence 8887777654444433333222 23445677777777666665332211 1 12333
Q ss_pred HHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchh-chHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcc
Q 006201 325 LLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVP-LVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKL 403 (657)
Q Consensus 325 l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~-~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~ 403 (657)
++..+. | ......+.+.|+-+++.-|..--| ..+..+-+.+-=.+..+|.||+.||+..+-..+ +.+
T Consensus 455 LC~fIE----D-------cey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~-d~~ 522 (898)
T COG5240 455 LCTFIE----D-------CEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNIS-DVV 522 (898)
T ss_pred HHHHHh----h-------cchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcc-ccc
Confidence 333221 1 122334555566666554432222 222223233223456899999999999886543 222
Q ss_pred hHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 006201 404 VPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMF 438 (657)
Q Consensus 404 ~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~ 438 (657)
.+ ..+...+.+++ +|.+..||.+|..++..+-
T Consensus 523 ~~--~sv~~~lkRcl-nD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 523 SP--QSVENALKRCL-NDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred cH--HHHHHHHHHHh-hcccHHHHHHHHHHHHhhh
Confidence 11 23344555677 9999999999988886654
No 80
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.48 E-value=2e-07 Score=64.87 Aligned_cols=55 Identities=38% Similarity=0.646 Sum_probs=50.6
Q ss_pred hhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 006201 381 WRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRM 437 (657)
Q Consensus 381 ~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l 437 (657)
|.+|.+|+++||.+++.+ .....++++.+++.+...+ +|+++.||.+|+++||++
T Consensus 1 p~vR~~A~~aLg~l~~~~-~~~~~~~~~~~~~~L~~~L-~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGC-PELLQPYLPELLPALIPLL-QDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTT-HHHHHHHHHHHHHHHHHHT-TSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhccc-HHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHhcC
Confidence 889999999999988876 5778889999999999999 999999999999999875
No 81
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.48 E-value=4.5e-07 Score=78.91 Aligned_cols=131 Identities=24% Similarity=0.411 Sum_probs=95.9
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccc---cccc-----------hhh
Q 006201 106 HDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSS---DAVE-----------QDH 171 (657)
Q Consensus 106 ~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~---~~l~-----------~~~ 171 (657)
+.||+++|.+++.++.+++| ..||++++.+.+.+++ ++.....++.+|..+.+++.. ..+. ..+
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P-~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~ 79 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWP-QQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHCh-hhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Confidence 57899999999999999999 6999999999999888 577888899999999888731 1110 123
Q ss_pred HhHHHHHHHhccCCCCC--CHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHH
Q 006201 172 VNKILTAVVQGMNASES--NNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECL 243 (657)
Q Consensus 172 ~~~l~~~l~~~l~~~~~--~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l 243 (657)
...+++.+.+.+..... ..++...+++|+.+++.+++.... ....+++.++.+++ +++.+..+++||
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i---~~~~~l~~~~~~l~--~~~~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELI---INSNLLNLIFQLLQ--SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHH---HSSSHHHHHHHHTT--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHh---ccHHHHHHHHHHcC--CHHHHHHHHHhC
Confidence 45666666666663111 178899999999999987653211 11247788888774 445688888876
No 82
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.48 E-value=9.8e-06 Score=78.82 Aligned_cols=201 Identities=13% Similarity=0.150 Sum_probs=144.8
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc--chHHHHHHHHHHHHHHhhcc
Q 006201 412 NFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--VPNVAEKACGALYFLAQGFE 489 (657)
Q Consensus 412 ~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~~l~~~~~ 489 (657)
..++..+.++....=|..|+.-|-.+..... ...-.+++..++-.+++.|.| +...+.-|.+.|..+|++
T Consensus 289 ~~~l~~~~g~e~a~~~k~alsel~~m~~e~s------fsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~-- 360 (516)
T KOG2956|consen 289 ADLLKEISGSERASERKEALSELPKMLCEGS------FSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTN-- 360 (516)
T ss_pred HHHHHhccCccchhHHHHHHHHHHHHHHccc------hhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHh--
Confidence 3344444233344446666553333333211 123467899999999999998 467888899999999985
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhcCChh
Q 006201 490 DAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSD 569 (657)
Q Consensus 490 ~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~ 569 (657)
.++.+..+.+..+..++..-.+.+ +..++.+.=+|+..+++..|.. -+..+.|.++. .|
T Consensus 361 ----Q~~~l~DstE~ai~K~Leaa~ds~--~~v~~~Aeed~~~~las~~P~~---~I~~i~~~Ilt------------~D 419 (516)
T KOG2956|consen 361 ----QPARLFDSTEIAICKVLEAAKDSQ--DEVMRVAEEDCLTTLASHLPLQ---CIVNISPLILT------------AD 419 (516)
T ss_pred ----chHhhhchHHHHHHHHHHHHhCCc--hhHHHHHHHHHHHHHHhhCchh---HHHHHhhHHhc------------Cc
Confidence 366788888988888888888776 4566665556666777766642 23344444432 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHcccCCcchhhHHHHHHHHHHHhc-hhhhhccc
Q 006201 570 EREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATG-LCHHRRCC 648 (657)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~~~~l~~l~~~~g-~~f~~y~~ 648 (657)
++. --.++.+++.++..+..+. ..+.++.+.+.+++.+...++.||+.+..|+..+...+| ..|.|||.
T Consensus 420 ~~~-----~~~~iKm~Tkl~e~l~~Ee-----L~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~ 489 (516)
T KOG2956|consen 420 EPR-----AVAVIKMLTKLFERLSAEE-----LLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLE 489 (516)
T ss_pred chH-----HHHHHHHHHHHHhhcCHHH-----HHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhh
Confidence 331 1147789999999999886 889999999999999999999999999999999999999 99999998
Q ss_pred ccc
Q 006201 649 WGL 651 (657)
Q Consensus 649 ~~~ 651 (657)
.+.
T Consensus 490 ~Lt 492 (516)
T KOG2956|consen 490 QLT 492 (516)
T ss_pred hcc
Confidence 653
No 83
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=0.0034 Score=65.93 Aligned_cols=501 Identities=13% Similarity=0.142 Sum_probs=250.8
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhc----CC--CChhHHHHHHHHHhhhcccchhhhHHHhhhhc
Q 006201 9 LLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVN----DE--KPVESRKLAGLILKNALDAKEQHRKFELVQRW 82 (657)
Q Consensus 9 l~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~----~~--~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~ 82 (657)
+.-+.+....++++--+.|.-+.+.++|+-|..|+.-+.+ .. ....++..|-.++|++ ++..
T Consensus 94 v~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~-----R~ef------- 161 (960)
T KOG1992|consen 94 VTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRY-----RPEF------- 161 (960)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhc-----Cccc-------
Confidence 3344566667888877777777766766666666544442 11 1234555555555552 1110
Q ss_pred ccCChHHHHHHHHHHH--------------Hhc--CCCChHHHHHHHH-------HHHHHHhhhcCC---CCCchHHHHH
Q 006201 83 LSLDSSVKAQIKSFIL--------------KTL--SSPAHDARSTASQ-------VVAKVAGIELPH---KQWPELIGAL 136 (657)
Q Consensus 83 ~~l~~~~~~~i~~~ll--------------~~l--~~~~~~vr~~aa~-------~l~~i~~~~~~~---~~~~~l~~~l 136 (657)
=+++--.+||-.|- +.. .+.+...-+.+-. ..-.+.-.+.|+ +...+.++..
T Consensus 162 --rSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F 239 (960)
T KOG1992|consen 162 --RSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAF 239 (960)
T ss_pred --ccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHH
Confidence 12222222222211 111 1122222222222 222333334442 2334556666
Q ss_pred HHhhcCCCh-------------hHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCC--CCCHH-HHHHHHHHH
Q 006201 137 LSNIHQLPP-------------HTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNAS--ESNND-VRLAATRAL 200 (657)
Q Consensus 137 ~~~l~~~~~-------------~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~--~~~~~-vr~~al~~l 200 (657)
.+.++.+++ ..|...+..+......+ ++.+ .+.+.+.+....+.+.+- ++..+ +...|++.|
T Consensus 240 ~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kY-eEef-~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FL 317 (960)
T KOG1992|consen 240 HKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKY-EEEF-QPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFL 317 (960)
T ss_pred HHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhh-HHHH-HhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 666653321 23445556666666666 5666 566777776666666521 22222 334566666
Q ss_pred HHHHhh--chhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCCh-HHH
Q 006201 201 YNALGF--AQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEE-PVA 277 (657)
Q Consensus 201 ~~~~~~--~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~v~ 277 (657)
.++... ..+.|.. +.++..+.+.+--++...|..--+.+- .. -++.+-+.++-.|- .-|
T Consensus 318 t~V~~r~~y~~~F~~----~~vl~~i~e~VvlpN~~lR~eDeElFE----D~----------pleYiRRDlEGsDvdTRR 379 (960)
T KOG1992|consen 318 TSVSRRPHYAELFEG----ENVLAQICEKVVLPNLILREEDEELFE----DN----------PLEYIRRDLEGSDVDTRR 379 (960)
T ss_pred HHHHhhhhhHhhhcc----hHHHHHHHHhhcccccccchhhHHHhc----cC----------HHHHHHHhcccCCcchhH
Confidence 665431 2233333 234444444332233333322211111 11 12222234443333 346
Q ss_pred HHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHH
Q 006201 278 LQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVA 357 (657)
Q Consensus 278 ~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~ 357 (657)
..|++++..+++.- + ..+...+...+..++...+. ++ ..+|.....+.....+++
T Consensus 380 R~a~dlvrgL~~~f-----------e--------~~vt~v~~~~v~~~l~~y~~---nP---S~nWk~kd~aiyL~tala 434 (960)
T KOG1992|consen 380 RAAIDLVRGLCKNF-----------E--------GQVTGVFSSEVQRLLDQYSK---NP---SGNWKKKDRAIYLVTALA 434 (960)
T ss_pred HHHHHHHHHHHHHh-----------c--------chhHHHHHHHHHHHHHHhcc---CC---CccccccchhhhhhHHHH
Confidence 67888887777631 0 11223333333334332221 11 234877777777777776
Q ss_pred hhc-----CC-------CchhchHHHHHhhhcCc----chhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCC
Q 006201 358 RTV-----GD-------DIVPLVMPFVEENITKQ----EWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQD 421 (657)
Q Consensus 358 ~~~-----~~-------~~~~~l~~~l~~~l~~~----~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d 421 (657)
..- |- ++...+...+...+.++ .+-.|.+++.-+-.. ...--.+++-.++|.+...+ +.
T Consensus 435 ik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~F----R~ql~~~~lm~~~p~li~~L-~a 509 (960)
T KOG1992|consen 435 IKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTF----RNQLGKEHLMALLPRLIRFL-EA 509 (960)
T ss_pred hhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeee----cccCChHHHHHHHHHHHHhc-cC
Confidence 542 11 11112222222223332 233444443222111 11223456778889999999 88
Q ss_pred CcHHHHHHHHHHHHHHHhhhccC-c-CCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 006201 422 PNNHVKDTTAWTLGRMFEFLHGS-T-LETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPL 498 (657)
Q Consensus 422 ~~~~vr~~a~~~l~~l~~~~~~~-~-~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l 498 (657)
+...|-.-|+.++.++....... . .=++....++...++..+++++.- ...--.....++.+++... +..+
T Consensus 510 ~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~------~~~i 583 (960)
T KOG1992|consen 510 ESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISIL------QSAI 583 (960)
T ss_pred cchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhC------HHhh
Confidence 88888888888888876644210 0 001234456667777777777762 2222234456666666553 3456
Q ss_pred chhHHHHHHHHHHhhc----cccchhhhHHHHHHHHHHHHHHhccccc----HHHHHHHHHHHHHHHHHHHhhhcCChhH
Q 006201 499 TPFFQEIVQALLTVTH----REDAGESRLRTAAYETLNEVVRCSTDET----APMVMQLVPLIMMELHQTLEAQKLSSDE 570 (657)
Q Consensus 499 ~~~~~~i~~~L~~~l~----~~~~~~~~~~~~~~~al~~l~~~~~~~~----~~~~~~l~~~l~~~l~~~~~~~~~~~~~ 570 (657)
.|+.+.++..|.+.+. +++ ++.--...+++++.++...+..- ..+...++|.+...+.+.++
T Consensus 584 ~p~~~~~l~~Lteiv~~v~KNPs--~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~-------- 653 (960)
T KOG1992|consen 584 IPHAPELLRQLTEIVEEVSKNPS--NPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQ-------- 653 (960)
T ss_pred hhhhhHHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 6888888887776653 333 23333479999999999887643 44666677766666654331
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Q 006201 571 REKQNEIQGLLCGCLQVIIQKLGS 594 (657)
Q Consensus 571 ~~~~~~~~~~~~~~l~~l~~~~~~ 594 (657)
++--.++..++.++...+.
T Consensus 654 -----EfiPYvfQlla~lve~~~~ 672 (960)
T KOG1992|consen 654 -----EFIPYVFQLLAVLVEHSSG 672 (960)
T ss_pred -----HHHHHHHHHHHHHHHhcCC
Confidence 2333567777777776665
No 84
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.42 E-value=6.3e-07 Score=74.82 Aligned_cols=110 Identities=15% Similarity=0.218 Sum_probs=84.9
Q ss_pred hHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHH-HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcC
Q 006201 368 VMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVN-IALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTL 446 (657)
Q Consensus 368 l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~-~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~ 446 (657)
+++.+.+.+.+++|..|+.++.+++.++... +.....++. .+++.+++.+ .|++++||..+++++++++...+.
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l-~~~~~~v~~~a~~~L~~l~~~~~~--- 82 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGN-NDNIQAVVEAGGLPALVQLL-KSEDEEVVKAALWALRNLAAGPED--- 82 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHH-hCCCHHHHHHHHHHHHHHccCcHH---
Confidence 3455555667778999999999999999863 344444455 7889999999 999999999999999999886531
Q ss_pred CCccCCcccH-HHHHHHHHHHccc-chHHHHHHHHHHHHHHh
Q 006201 447 ETPIINQGNC-QQIISVLLQSMKD-VPNVAEKACGALYFLAQ 486 (657)
Q Consensus 447 ~~~~~~~~~~-~~il~~l~~~l~d-~~~v~~~a~~al~~l~~ 486 (657)
...... ..+++.+++.+++ +..++..+++++.++++
T Consensus 83 ----~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 83 ----NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred ----HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 112222 3478899998886 68999999999998863
No 85
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.0045 Score=64.32 Aligned_cols=316 Identities=12% Similarity=0.135 Sum_probs=173.7
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhh
Q 006201 92 QIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDH 171 (657)
Q Consensus 92 ~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~ 171 (657)
.+-+.+-+-|.+|++.||-..- .-+++..-| .-...++|.+.+++.-...-+|+.|+-++..|...+ .+.+ +.
T Consensus 99 Lvcna~RkDLQHPNEyiRG~TL---RFLckLkE~-ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~-~~L~--pD 171 (948)
T KOG1058|consen 99 LVCNAYRKDLQHPNEYIRGSTL---RFLCKLKEP-ELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF-EHLI--PD 171 (948)
T ss_pred HHHHHHhhhccCchHhhcchhh---hhhhhcCcH-HHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh-hhhc--CC
Confidence 4445566678899999996544 344444434 255678999999999999999999999999998875 3444 44
Q ss_pred HhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHH---hhccCCcHHHHHHHHHHHHHHHH
Q 006201 172 VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVC---EATLSPEVKIRQAAFECLVAISS 248 (657)
Q Consensus 172 ~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~---~~~~~~~~~~~~~~~~~l~~l~~ 248 (657)
...++..++. . +.++..++.|+-.|..+- + ..-+..+. .-+.+-++.....+++.+...+.
T Consensus 172 apeLi~~fL~--~--e~DpsCkRNAFi~L~~~D---------~---ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~ 235 (948)
T KOG1058|consen 172 APELIESFLL--T--EQDPSCKRNAFLMLFTTD---------P---ERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCL 235 (948)
T ss_pred hHHHHHHHHH--h--ccCchhHHHHHHHHHhcC---------H---HHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHh
Confidence 4555544432 2 667777777765544311 1 11222222 22222334556666677776666
Q ss_pred HHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHH
Q 006201 249 TYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLET 328 (657)
Q Consensus 249 ~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 328 (657)
..|..-..|++-+ +..+...++.++-.|...+.++... +..++...+.++..+.+
T Consensus 236 ~~p~~~~~~i~~i----~~lL~stssaV~fEaa~tlv~lS~~--------------------p~alk~Aa~~~i~l~~k- 290 (948)
T KOG1058|consen 236 ANPAEKARYIRCI----YNLLSSTSSAVIFEAAGTLVTLSND--------------------PTALKAAASTYIDLLVK- 290 (948)
T ss_pred cCHHHhhHHHHHH----HHHHhcCCchhhhhhcceEEEccCC--------------------HHHHHHHHHHHHHHHHh-
Confidence 5554444444444 4445555666665555444443321 12334433444444432
Q ss_pred hhhhcCccccCCCcchHhhhHHHHHHHHHhhc--CCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHH
Q 006201 329 LLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV--GDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPL 406 (657)
Q Consensus 329 l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~--~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~ 406 (657)
. .| .++.- -.|+++.... .+.++.-++--+...+.+++-.+|.-++...-.++.+-.
T Consensus 291 ---e-sd-------nnvkl---Ivldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN------- 349 (948)
T KOG1058|consen 291 ---E-SD-------NNVKL---IVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN------- 349 (948)
T ss_pred ---c-cC-------cchhh---hhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc-------
Confidence 0 00 12222 2333333322 223333222223355677888888877766555655422
Q ss_pred HHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHH
Q 006201 407 VNIALNFMLTALM------QDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACG 479 (657)
Q Consensus 407 ~~~i~~~l~~~l~------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~ 479 (657)
+.+++..+.+.+. +|.+..-|+.-.+++..++-.+ +.+-..+++.++..+.| |+........
T Consensus 350 vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~F-----------p~~aatvV~~ll~fisD~N~~aas~vl~ 418 (948)
T KOG1058|consen 350 VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKF-----------PEVAATVVSLLLDFISDSNEAAASDVLM 418 (948)
T ss_pred HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcC-----------hHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 3444444444441 2344556777777776666655 35668888999999987 5644444444
Q ss_pred HHHHHHhh
Q 006201 480 ALYFLAQG 487 (657)
Q Consensus 480 al~~l~~~ 487 (657)
.+...++.
T Consensus 419 FvrE~iek 426 (948)
T KOG1058|consen 419 FVREAIEK 426 (948)
T ss_pred HHHHHHHh
Confidence 44444443
No 86
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.0011 Score=68.05 Aligned_cols=332 Identities=12% Similarity=0.100 Sum_probs=194.1
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcC
Q 006201 133 IGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFS 212 (657)
Q Consensus 133 ~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~ 212 (657)
+..+.+-+.+.|+.....|+.|++.+...- +......++ | ..|.+++...-||..|.-||..+..-.++...
T Consensus 113 in~iknDL~srn~~fv~LAL~~I~niG~re----~~ea~~~DI-~---KlLvS~~~~~~vkqkaALclL~L~r~spDl~~ 184 (938)
T KOG1077|consen 113 INSIKNDLSSRNPTFVCLALHCIANIGSRE----MAEAFADDI-P---KLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN 184 (938)
T ss_pred HHHHHhhhhcCCcHHHHHHHHHHHhhccHh----HHHHhhhhh-H---HHHhCCcchHHHHHHHHHHHHHHHhcCccccC
Confidence 344445556678888888999988875432 101122222 2 33444466778898888888887664443333
Q ss_pred ChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHH-
Q 006201 213 NDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEE- 291 (657)
Q Consensus 213 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~- 291 (657)
. ..+.+-+..++.+.+-.+-.++...+..++...|+.....++.-+..+. .++...
T Consensus 185 ~----~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~-------------------riv~~~~ 241 (938)
T KOG1077|consen 185 P----GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLS-------------------RIVVVVG 241 (938)
T ss_pred h----hhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHH-------------------HHHhhcc
Confidence 2 3566666677777776666677777777776665544333222222111 111110
Q ss_pred HHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHH
Q 006201 292 IDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPF 371 (657)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~ 371 (657)
.+..+ | .-..+|+++..-..+ .. ++.. ..++| -..|..-.+++.++.....+..
T Consensus 242 t~~qd-Y-----Tyy~vP~PWL~vKl~----rl-Lq~~-p~~~D-------~~~r~~l~evl~~iLnk~~~~~------- 295 (938)
T KOG1077|consen 242 TSLQD-Y-----TYYFVPAPWLQVKLL----RL-LQIY-PTPED-------PSTRARLNEVLERILNKAQEPP------- 295 (938)
T ss_pred cchhh-c-----eeecCCChHHHHHHH----HH-HHhC-CCCCC-------chHHHHHHHHHHHHHhccccCc-------
Confidence 00000 0 001234444443322 22 2222 12222 2566667788877776543211
Q ss_pred HHhhhcCcc---hhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCC
Q 006201 372 VEENITKQE---WRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLET 448 (657)
Q Consensus 372 l~~~l~~~~---~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 448 (657)
.+.+ ...+.|.++-.-+++-.. +.-.+.+...+..+-+.+ .+..+.+|+-|+..+..++..-.
T Consensus 296 -----~~k~vq~~na~naVLFeaI~l~~h~--D~e~~ll~~~~~~Lg~fl-s~rE~NiRYLaLEsm~~L~ss~~------ 361 (938)
T KOG1077|consen 296 -----KSKKVQHSNAKNAVLFEAISLAIHL--DSEPELLSRAVNQLGQFL-SHRETNIRYLALESMCKLASSEF------ 361 (938)
T ss_pred -----cccchHhhhhHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHh-hcccccchhhhHHHHHHHHhccc------
Confidence 1111 233445554444444332 333455677778888888 99999999999988888877632
Q ss_pred ccCCcccHHHHHHHHHHHcc-c-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHH
Q 006201 449 PIINQGNCQQIISVLLQSMK-D-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTA 526 (657)
Q Consensus 449 ~~~~~~~~~~il~~l~~~l~-d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~ 526 (657)
..+.++.-...++..|+ + +..+|.+|...|..+|+. .....|+..+++.+...+ ..+|+.
T Consensus 362 ---s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~------------~Nak~IV~elLqYL~tAd---~siree 423 (938)
T KOG1077|consen 362 ---SIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV------------SNAKQIVAELLQYLETAD---YSIREE 423 (938)
T ss_pred ---hHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhch------------hhHHHHHHHHHHHHhhcc---hHHHHH
Confidence 23344444667777777 3 678999999999999985 467888889999988764 678877
Q ss_pred HHHHHHHHHHhcccccHHHHHHHHHHH
Q 006201 527 AYETLNEVVRCSTDETAPMVMQLVPLI 553 (657)
Q Consensus 527 ~~~al~~l~~~~~~~~~~~~~~l~~~l 553 (657)
..-=++-+++....+..=|+..+++.+
T Consensus 424 ivlKvAILaEKyAtDy~WyVdviLqLi 450 (938)
T KOG1077|consen 424 IVLKVAILAEKYATDYSWYVDVILQLI 450 (938)
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 777777777776666555666555443
No 87
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.00066 Score=70.81 Aligned_cols=403 Identities=15% Similarity=0.150 Sum_probs=206.6
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhcCcccH-HHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccC
Q 006201 7 QILLNAQSVDGTVRKQAEESLKQYQEQNLPGF-LLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSL 85 (657)
Q Consensus 7 ~~l~~~~s~d~~~r~~A~~~L~~~~~~~~~~~-~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l 85 (657)
-.+....++++.+|..|-..+..+.-....++ ...|...+.+ .++.+|..|+....++.....+
T Consensus 90 t~~kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l~d--~~~yvRktaa~~vakl~~~~~~------------- 154 (734)
T KOG1061|consen 90 TFLKDCEDPNPLIRALALRTMGCLRVDKITEYLCDPLLKCLKD--DDPYVRKTAAVCVAKLFDIDPD------------- 154 (734)
T ss_pred hhhccCCCCCHHHHHHHhhceeeEeehHHHHHHHHHHHHhccC--CChhHHHHHHHHHHHhhcCChh-------------
Confidence 34455667889999999988875533211222 3334444443 5789999988887775543221
Q ss_pred ChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC---CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhc
Q 006201 86 DSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH---KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEV 162 (657)
Q Consensus 86 ~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~ 162 (657)
-.....+...|-..+.++++.|-..+..++..|....-.. ..-+.++..+++.+..-++--+ +.++..+..+.
T Consensus 155 -~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~q---i~IL~~l~~y~ 230 (734)
T KOG1061|consen 155 -LVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQ---IFILDCLAEYV 230 (734)
T ss_pred -hccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhH---HHHHHHHHhcC
Confidence 1112234445555666888888888888899998876211 1224444555555444343333 34444555555
Q ss_pred cccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHH
Q 006201 163 SSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFEC 242 (657)
Q Consensus 163 ~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~ 242 (657)
..+ ......++..+...+. ..+..|...+.+.+...+.++.. +. ......+-+-+..++.... ++.-.++..
T Consensus 231 p~d---~~ea~~i~~r~~p~Lq--h~n~avvlsavKv~l~~~~~~~~-~~-~~~~~K~~~pl~tlls~~~-e~qyvaLrN 302 (734)
T KOG1061|consen 231 PKD---SREAEDICERLTPRLQ--HANSAVVLSAVKVILQLVKYLKQ-VN-ELLFKKVAPPLVTLLSSES-EIQYVALRN 302 (734)
T ss_pred CCC---chhHHHHHHHhhhhhc--cCCcceEeehHHHHHHHHHHHHH-HH-HHHHHHhcccceeeecccc-hhhHHHHhh
Confidence 222 1234556666666666 56677888888988888776543 10 0011112222222333333 666667777
Q ss_pred HHHHHHHHHHhhHHhHHHHH------------------------------HHHHHHHhcCChHHHHHHHHHHHHHhHHHH
Q 006201 243 LVAISSTYYEKLAPYIQDIF------------------------------NITAKAVREDEEPVALQAIEFWSSVCDEEI 292 (657)
Q Consensus 243 l~~l~~~~~~~~~~~~~~l~------------------------------~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~ 292 (657)
+.-+....|+.+...+..++ .-+.....+.|.+....++..++.++...
T Consensus 303 i~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~- 381 (734)
T KOG1061|consen 303 INLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKA- 381 (734)
T ss_pred HHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhh-
Confidence 77776666654443221111 11111111122222233333322222110
Q ss_pred HhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHH
Q 006201 293 DILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFV 372 (657)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l 372 (657)
... ...++.++..+.-..+ .+-..+...+..+...+|... ..+++.+
T Consensus 382 ----------------------e~~-~~cv~~lLell~~~~~---------yvvqE~~vvi~dilRkyP~~~-~~vv~~l 428 (734)
T KOG1061|consen 382 ----------------------EQS-NDCVSILLELLETKVD---------YVVQEAIVVIRDILRKYPNKY-ESVVAIL 428 (734)
T ss_pred ----------------------hhh-hhhHHHHHHHHhhccc---------ceeeehhHHHHhhhhcCCCch-hhhhhhh
Confidence 000 2234444443331110 111223344555555555433 3444444
Q ss_pred HhhhcC-cchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccC
Q 006201 373 EENITK-QEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPII 451 (657)
Q Consensus 373 ~~~l~~-~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 451 (657)
...+.+ +++..|.+-+|.+|.-++... + ...++..+++.+ .|++..|+..-+-+.-++.-..+ ..
T Consensus 429 ~~~~~sl~epeak~amiWilg~y~~~i~-~-----a~elL~~f~en~-~dE~~~Vql~LLta~ik~Fl~~p-------~~ 494 (734)
T KOG1061|consen 429 CENLDSLQEPEAKAALIWILGEYAERIE-N-----ALELLESFLENF-KDETAEVQLELLTAAIKLFLKKP-------TE 494 (734)
T ss_pred cccccccCChHHHHHHHHHHhhhhhccC-c-----HHHHHHHHHhhc-ccchHHHHHHHHHHHHHHHhcCC-------cc
Confidence 444433 346788888889998887652 2 244566667777 88888888665544444333322 12
Q ss_pred CcccHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Q 006201 452 NQGNCQQIISVLLQSMKDVPNVAEKACGALYFLA 485 (657)
Q Consensus 452 ~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~l~ 485 (657)
..+.+..+++..+.-- +++.+|.++..--.-+.
T Consensus 495 tq~~l~~vL~~~~~d~-~~~dlrDr~l~Y~RlLs 527 (734)
T KOG1061|consen 495 TQELLQGVLPLATADT-DNPDLRDRGLIYWRLLS 527 (734)
T ss_pred HHHHHHHHHhhhhccc-cChhhhhhHHHHHHHhh
Confidence 3344444444433322 26889988876555443
No 88
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.0082 Score=61.58 Aligned_cols=144 Identities=18% Similarity=0.185 Sum_probs=109.5
Q ss_pred HHHHHHHHhc-CCChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhc
Q 006201 4 EVTQILLNAQ-SVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRW 82 (657)
Q Consensus 4 ~l~~~l~~~~-s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~ 82 (657)
++..+-..++ +.|+..|.+||..|.++.++ |+.+..+.-++..++ .+....+|+..|.+.+..+
T Consensus 6 qLe~lCk~LY~s~D~~~R~~AE~~L~e~s~s--peclskCqlll~~gs-~pYs~mlAst~L~Klvs~~------------ 70 (1082)
T KOG1410|consen 6 QLESLCKDLYESTDPTARHRAEKALAELSES--PECLSKCQLLLERGS-YPYSQMLASTCLMKLVSRK------------ 70 (1082)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHccC--HHHHHHHHHHHHcCC-CchHHHHHHHHHHHHHcCC------------
Confidence 4555666664 57999999999999999888 999999988888744 5556677777887777654
Q ss_pred ccCChHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHHHhhhcCC-C----CCchHHHHHHHhhcCCChhHHHHHHH
Q 006201 83 LSLDSSVKAQIKSFILKTLSSP----AHDARSTASQVVAKVAGIELPH-K----QWPELIGALLSNIHQLPPHTKQATLE 153 (657)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~~----~~~vr~~aa~~l~~i~~~~~~~-~----~~~~l~~~l~~~l~~~~~~~~~~~l~ 153 (657)
..++-+.+-.||+-+++.+... .+.|-..+++.++++-+..+-. + .+-+.+..+..-++.++.+.-.-++.
T Consensus 71 t~lpl~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~ 150 (1082)
T KOG1410|consen 71 TPLPLEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQ 150 (1082)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHH
Confidence 2488899999999999998863 3788899999999999876532 1 34566777777777766666666777
Q ss_pred HHHHHhhhc
Q 006201 154 TLGYICEEV 162 (657)
Q Consensus 154 ~l~~i~~~~ 162 (657)
+|..+..++
T Consensus 151 iLsqLvqem 159 (1082)
T KOG1410|consen 151 ILSQLVQEM 159 (1082)
T ss_pred HHHHHHHHh
Confidence 777776654
No 89
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=98.25 E-value=0.00046 Score=65.20 Aligned_cols=246 Identities=15% Similarity=0.169 Sum_probs=159.7
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCCh
Q 006201 135 ALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSND 214 (657)
Q Consensus 135 ~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~ 214 (657)
.|-..++++++..|..|+.+|..++...+++.+....+.-++..+...+. | ...-..+++++..++.. + .+..+
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~--D--~~~~~~~l~gl~~L~~~-~-~~~~~ 76 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD--D--HACVQPALKGLLALVKM-K-NFSPE 76 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc--c--HhhHHHHHHHHHHHHhC-c-CCChh
Confidence 35567888999999999999999999996677766677777877777775 2 33333447777776643 1 22221
Q ss_pred hhHHHHHHHHHhhc--cCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHhHHH
Q 006201 215 MERDYIMRVVCEAT--LSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVR-EDEEPVALQAIEFWSSVCDEE 291 (657)
Q Consensus 215 ~~~~~il~~l~~~~--~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~v~~~a~~~~~~l~~~~ 291 (657)
....+++.++... +......|..+++.+..+.+++...+...-..++.-++..+. +.||+--..+++++..+...-
T Consensus 77 -~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~ 155 (262)
T PF14500_consen 77 -SAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEF 155 (262)
T ss_pred -hHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence 1245666666533 334567899999999999998877665555566666666655 467887788888777666531
Q ss_pred HHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHh----hhhcCccccCCCcchHhhhHHHHHHHHHhhc--CCCch
Q 006201 292 IDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETL----LKQEEDQDQDEGAWNIAMAGGTCLGLVARTV--GDDIV 365 (657)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l----~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~--~~~~~ 365 (657)
. +.+..+.+...+.-+. +.+.+|+ . .....+.-..+-.++ ...+-
T Consensus 156 --------------------~-~~~~~e~lFd~~~cYFPI~F~pp~~dp------~--~IT~edLk~~L~~cl~s~~~fa 206 (262)
T PF14500_consen 156 --------------------D-ISEFAEDLFDVFSCYFPITFRPPPNDP------Y--GITREDLKRALRNCLSSTPLFA 206 (262)
T ss_pred --------------------c-cchhHHHHHHHhhheeeeeeeCCCCCC------C--CCCHHHHHHHHHHHhcCcHhhH
Confidence 1 1233334444443322 1122221 1 112223333333333 24566
Q ss_pred hchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHH
Q 006201 366 PLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLT 416 (657)
Q Consensus 366 ~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~ 416 (657)
|..+|++.+.+.++...++..++..|...+...+.+.+.+|...+...+..
T Consensus 207 ~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 207 PFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 888899999998888889999999999988876666677787777776654
No 90
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.0084 Score=62.80 Aligned_cols=123 Identities=15% Similarity=0.113 Sum_probs=83.5
Q ss_pred CcchHhhhHHHHHHHHHhhcCC---CchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcc--hHHHHHHHHHHH
Q 006201 341 GAWNIAMAGGTCLGLVARTVGD---DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKL--VPLVNIALNFML 415 (657)
Q Consensus 341 ~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~--~~~~~~i~~~l~ 415 (657)
..+...++..+++..+....++ ..+..+..++.++ ..+.-+...|+-++..+ +... ..|+..++..+.
T Consensus 404 Gg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDc------e~~~i~~rILhlLG~Eg-P~a~~Pskyir~iyNRvi 476 (865)
T KOG1078|consen 404 GGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDC------EFTQIAVRILHLLGKEG-PKAPNPSKYIRFIYNRVI 476 (865)
T ss_pred cCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhc------cchHHHHHHHHHHhccC-CCCCCcchhhHHHhhhhh
Confidence 3466777888888888876543 3455555555543 34556777788777654 3333 235555555543
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHh
Q 006201 416 TALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQ 486 (657)
Q Consensus 416 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~ 486 (657)
| .|..||.+|..++.+|+... ....+.+...+.+.+.| +..||.+|..++..+-+
T Consensus 477 --L---En~ivRaaAv~alaKfg~~~-----------~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 477 --L---ENAIVRAAAVSALAKFGAQD-----------VVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred --h---hhhhhHHHHHHHHHHHhcCC-----------CCccccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 4 78899999999999998322 23346677778888887 68999999999988763
No 91
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.20 E-value=0.00013 Score=78.81 Aligned_cols=210 Identities=16% Similarity=0.239 Sum_probs=155.8
Q ss_pred CCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Q 006201 361 GDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEF 440 (657)
Q Consensus 361 ~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~ 440 (657)
..++++.+-+-+...+.+++|+.|-.|+..+..+.+.........+...+...+-..+ .|.|..|-..++.++..++..
T Consensus 247 ~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~-kDaN~~v~~~aa~~l~~ia~~ 325 (815)
T KOG1820|consen 247 RVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRL-KDANINVVMLAAQILELIAKK 325 (815)
T ss_pred hhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhc-cCcchhHHHHHHHHHHHHHHh
Confidence 4567778888888889999999999999999988876421222333333333333455 899999999999999999998
Q ss_pred hccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccch
Q 006201 441 LHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAG 519 (657)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~ 519 (657)
+.. ....|...+.|.++..+.+ .+.++..+..++..++.. ..+..+.+.++..+.+.+
T Consensus 326 lr~-------~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------------~~l~~~~~~I~e~lk~kn-- 384 (815)
T KOG1820|consen 326 LRP-------LFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS------------TPLSKMSEAILEALKGKN-- 384 (815)
T ss_pred cch-------hhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------------ccHHHHHHHHHHHhcCCC--
Confidence 863 3567889999999999998 578998888888888763 245555666667776654
Q ss_pred hhhHHHHHHHHHHHHHHhcccc--cHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 006201 520 ESRLRTAAYETLNEVVRCSTDE--TAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQ 597 (657)
Q Consensus 520 ~~~~~~~~~~al~~l~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 597 (657)
+..+..+...++...+..+.. +.+.+..+.|.+....+.. + .++|.++.++++.+.+.+|...
T Consensus 385 -p~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~---------~----~~VR~Aa~e~~~~v~k~~Ge~~- 449 (815)
T KOG1820|consen 385 -PQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDT---------D----KDVRKAALEAVAAVMKVHGEEV- 449 (815)
T ss_pred -hhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCC---------c----HHHHHHHHHHHHHHHHHhhHHH-
Confidence 677888888999999888843 4455667777766544321 2 2689999999999999999874
Q ss_pred hhhHhhHHHHHHHH
Q 006201 598 TKYVFMQYADQMMG 611 (657)
Q Consensus 598 ~~~~~~~~~~~i~~ 611 (657)
|..|+..+-+
T Consensus 450 ----~~k~L~~~~~ 459 (815)
T KOG1820|consen 450 ----FKKLLKDLDK 459 (815)
T ss_pred ----HHHHHHhhcc
Confidence 5566666553
No 92
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=0.019 Score=59.87 Aligned_cols=518 Identities=13% Similarity=0.128 Sum_probs=248.3
Q ss_pred HHhcCcccHHHHHHHHHhc--CCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHHHHHHhcCCCChH
Q 006201 30 YQEQNLPGFLLSLAGELVN--DEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHD 107 (657)
Q Consensus 30 ~~~~~~~~~~~~L~~~l~~--~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~ 107 (657)
+.+++.|.....-.+++.. ...++++-..+.-..+.++. |-.++-=.-+.-.+.|+..+. .+.
T Consensus 182 MR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVS-------------WIdInLIaNd~f~nLLy~fl~--iee 246 (980)
T KOG2021|consen 182 MRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVS-------------WIDINLIANDYFLNLLYKFLN--IEE 246 (980)
T ss_pred HHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhh-------------hhhhhhhhchhHHHHHHHHHh--HHH
Confidence 4455566666555566542 13367777777777777653 544443333344455566555 568
Q ss_pred HHHHHHHHHHHHHhhh-cCCCCCchHHHHHHHhhc---------CCChhHHHHHHHHHHHHhhhcc-----c-cccc---
Q 006201 108 ARSTASQVVAKVAGIE-LPHKQWPELIGALLSNIH---------QLPPHTKQATLETLGYICEEVS-----S-DAVE--- 168 (657)
Q Consensus 108 vr~~aa~~l~~i~~~~-~~~~~~~~l~~~l~~~l~---------~~~~~~~~~~l~~l~~i~~~~~-----~-~~l~--- 168 (657)
+|-.||.|+-.+..+- -|. .--.+++.|.+.+. ..|.+..+..-..+.....++. + ...+
T Consensus 247 lR~aac~cilaiVsKkMkP~-dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~ 325 (980)
T KOG2021|consen 247 LRIAACNCILAIVSKKMKPM-DKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLY 325 (980)
T ss_pred HHHHHHHHHHHHHhcCCChh-HHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHH
Confidence 9999999988877753 342 22245555533321 1344444444444433322210 0 0010
Q ss_pred -h---hhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhc--CChh--hHHHHHHHHHh-h----c--cCCc-
Q 006201 169 -Q---DHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANF--SNDM--ERDYIMRVVCE-A----T--LSPE- 232 (657)
Q Consensus 169 -~---~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~--~~~~--~~~~il~~l~~-~----~--~~~~- 232 (657)
+ ..+..++|.+++.++ +...++-...+.-+..++.+++... .... ....++..+.. . . .+++
T Consensus 326 kqn~l~~ll~~vpyllq~l~--~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~ 403 (980)
T KOG2021|consen 326 KQNVLSILLEIVPYLLQFLN--NEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNV 403 (980)
T ss_pred HHHHHHHHHHHHHHHHHHhc--ccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCC
Confidence 1 123457778888888 4555555555566666555443211 1110 11223322221 1 1 1111
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCC
Q 006201 233 ---------VKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFS 303 (657)
Q Consensus 233 ---------~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~ 303 (657)
.++|+..--.+..++...|+.+...+..-+...+..-+.......+.|+..+..+++..+. .+...+.
T Consensus 404 tg~EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~---~~~~~ns 480 (980)
T KOG2021|consen 404 TGDEEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKN---NYFGLNS 480 (980)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhcccc---ccccccC
Confidence 3567666666777777778777666666555444444445556677888888888875321 1111222
Q ss_pred CCCCCchhhHHHhhhhhHHHHHHH---------------------HhhhhcCcc------------c--cCCCcchHhhh
Q 006201 304 GDSDIPCFYFIKHALPVLVPLLLE---------------------TLLKQEEDQ------------D--QDEGAWNIAMA 348 (657)
Q Consensus 304 ~~~~~~~~~~~~~~l~~l~~~l~~---------------------~l~~~~~d~------------~--~d~~~~~~r~~ 348 (657)
|+- .. ...+..+++.+.. +.......+ + --.....+|.-
T Consensus 481 gd~--s~----~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~R 554 (980)
T KOG2021|consen 481 GDI--ST----SQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLR 554 (980)
T ss_pred ccc--cH----HHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHccchhccccccccchH
Confidence 221 00 0112222222211 111100000 0 00012345555
Q ss_pred HHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHH-----------------HHHHhhcC-CCC-CcchHHHH-
Q 006201 349 GGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATY-----------------AFGSILEG-PSP-EKLVPLVN- 408 (657)
Q Consensus 349 a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~-----------------~l~~i~~~-~~~-~~~~~~~~- 408 (657)
|.-.+.++.+.+.+.+.|.+ +-+.+.++|-= ...-.... ++|.+... -.+ +.-..+..
T Consensus 555 awYLF~RfVKlLkkqlvpfi-e~iln~iqdlL-~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~ 632 (980)
T KOG2021|consen 555 AWYLFTRFVKLLKKQLVPFI-EEILNKIQDLL-HIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANT 632 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-cCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHHHHHhc
Confidence 55555555554443333311 11112222110 00000000 00100000 000 00001111
Q ss_pred --------HHHHHHHHHhcCCCcHHHHH----HHHHHHHHHHhhhccCcCCCc-cCCcccHHHHHHHHHHHccc---chH
Q 006201 409 --------IALNFMLTALMQDPNNHVKD----TTAWTLGRMFEFLHGSTLETP-IINQGNCQQIISVLLQSMKD---VPN 472 (657)
Q Consensus 409 --------~i~~~l~~~l~~d~~~~vr~----~a~~~l~~l~~~~~~~~~~~~-~~~~~~~~~il~~l~~~l~d---~~~ 472 (657)
.++..+...+.+|....+.- -++.++|.+++-++....+.. ......+.+.+..++..|.- ...
T Consensus 633 litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~ 712 (980)
T KOG2021|consen 633 LITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKFEN 712 (980)
T ss_pred ccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhccccch
Confidence 12222222332344333332 334566777776542211000 00112345566666666652 467
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Q 006201 473 VAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPL 552 (657)
Q Consensus 473 v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~ 552 (657)
+|.+.-..+++++..++ ..+.||++.+++.+++-..- ..+. ..+..++.++......+.+++.+++|+
T Consensus 713 iRsavrft~hRmI~~lg------~~vlPfipklie~lL~s~d~-----kEmv-dfl~flsQLihkfk~~~~~ilnqmlpp 780 (980)
T KOG2021|consen 713 IRSAVRFTFHRMIPILG------NKVLPFIPKLIELLLSSTDL-----KEMV-DFLGFLSQLIHKFKTDCYQILNQMLPP 780 (980)
T ss_pred hHHHHHHHHHHHHHhcc------hhhhcchHHHHHHHHhcCCH-----HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999998875 46889999888877653321 2232 466777777777777788999999999
Q ss_pred HHHHHHHHHhhh---cCChhHHHHHHHHHHHHHHHHHHHH
Q 006201 553 IMMELHQTLEAQ---KLSSDEREKQNEIQGLLCGCLQVII 589 (657)
Q Consensus 553 l~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~l~ 589 (657)
++.++-+.+..+ .......+ ...+|...+..+.++.
T Consensus 781 ll~rIfsvi~r~a~p~dt~aa~e-k~~lrksy~~fLqtft 819 (980)
T KOG2021|consen 781 LLNRIFSVIERIAKPIDTAAAAE-KILLRKSYCTFLQTFT 819 (980)
T ss_pred HHHHHHHHhcccCCCCChhHHHH-HHHHHHHHHHHHHHHh
Confidence 988877766522 11111111 1234555666666655
No 93
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.02 Score=59.73 Aligned_cols=307 Identities=13% Similarity=0.141 Sum_probs=164.9
Q ss_pred ChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh---hcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhh--
Q 006201 86 DSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGI---ELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICE-- 160 (657)
Q Consensus 86 ~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~---~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~-- 160 (657)
.+|..+.+.+.+.++|.+....||+.|-.++..|.+. .+| .-|+++...+.. ..++.-++.|+..|...-.
T Consensus 128 E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~p--DapeLi~~fL~~--e~DpsCkRNAFi~L~~~D~Er 203 (948)
T KOG1058|consen 128 EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIP--DAPELIESFLLT--EQDPSCKRNAFLMLFTTDPER 203 (948)
T ss_pred cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcC--ChHHHHHHHHHh--ccCchhHHHHHHHHHhcCHHH
Confidence 4567778888999999999999999999999998876 233 456665554443 3345445555544443321
Q ss_pred ----------hccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhc-c
Q 006201 161 ----------EVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEAT-L 229 (657)
Q Consensus 161 ----------~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~-~ 229 (657)
.+ +. ++..-.-.+++.+.+... ..+.-+..-++|+.+++.-.+. ..+.+.-..++ -
T Consensus 204 Al~Yl~~~idqi-~~-~~~~LqlViVE~Irkv~~---~~p~~~~~~i~~i~~lL~stss--------aV~fEaa~tlv~l 270 (948)
T KOG1058|consen 204 ALNYLLSNIDQI-PS-FNDSLQLVIVELIRKVCL---ANPAEKARYIRCIYNLLSSTSS--------AVIFEAAGTLVTL 270 (948)
T ss_pred HHHHHHhhHhhc-cC-ccHHHHHHHHHHHHHHHh---cCHHHhhHHHHHHHHHHhcCCc--------hhhhhhcceEEEc
Confidence 11 10 100111112222222222 3456666677777776543211 01111111111 1
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHh----------------hHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHH
Q 006201 230 SPEVKIRQAAFECLVAISSTYYEK----------------LAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEID 293 (657)
Q Consensus 230 ~~~~~~~~~~~~~l~~l~~~~~~~----------------~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~ 293 (657)
..++...+.+..++.+++...++. -...+.+++--+++.+...|-++|..++.+...++...
T Consensus 271 S~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr-- 348 (948)
T KOG1058|consen 271 SNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR-- 348 (948)
T ss_pred cCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc--
Confidence 234444444444444444332211 01123344444455666777788888888766666531
Q ss_pred hhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHH
Q 006201 294 ILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVE 373 (657)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~ 373 (657)
.+.+++..+-+-+.+.-+. | .++.-..|..-.+++...+-.++ ++-..+++.+.
T Consensus 349 -----------------------Nvediv~~Lkke~~kT~~~-e-~d~~~~yRqlLiktih~cav~Fp-~~aatvV~~ll 402 (948)
T KOG1058|consen 349 -----------------------NVEDIVQFLKKEVMKTHNE-E-SDDNGKYRQLLIKTIHACAVKFP-EVAATVVSLLL 402 (948)
T ss_pred -----------------------cHHHHHHHHHHHHHhcccc-c-cccchHHHHHHHHHHHHHhhcCh-HHHHHHHHHHH
Confidence 1223444444433322221 1 12223567766666666665555 34455667777
Q ss_pred hhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhc
Q 006201 374 ENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLH 442 (657)
Q Consensus 374 ~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~ 442 (657)
+.+.|.+...-.+.+..+..+.+.. ++- -..++..++..+.+-..+.+-..|+|.+|.+++...
T Consensus 403 ~fisD~N~~aas~vl~FvrE~iek~-p~L----r~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 403 DFISDSNEAAASDVLMFVREAIEKF-PNL----RASIIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHhccCCHHHHHHHHHHHHHHHHhC-chH----HHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 7778888777677777777777654 221 123445555444223556677889999999998753
No 94
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=0.0019 Score=60.19 Aligned_cols=295 Identities=17% Similarity=0.186 Sum_probs=172.1
Q ss_pred HHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccc---hhhHhHHHHHHHhccCCCCC
Q 006201 112 ASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVE---QDHVNKILTAVVQGMNASES 188 (657)
Q Consensus 112 aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~---~~~~~~l~~~l~~~l~~~~~ 188 (657)
...++.++.+..+|...-|+++|.+...+..++..++..++.-++.+++..+....+ ......+++.++.++. ..
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIg--ge 140 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIG--GE 140 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHc--CC
Confidence 666888888888776678999999999999999999999999999998887422221 1223678888888888 67
Q ss_pred CHHHHHHHHHHHHHHHhhc---hhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhH-HHHHHH
Q 006201 189 NNDVRLAATRALYNALGFA---QANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYI-QDIFNI 264 (657)
Q Consensus 189 ~~~vr~~al~~l~~~~~~~---~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~ 264 (657)
+.+|.++|++.+.++..+- +-.|..+...+.-+. .+...-+.-.|-.+++.+..+.+..+......- ..++..
T Consensus 141 ddeVAkAAiesikrialfpaaleaiFeSellDdlhlr---nlaakcndiaRvRVleLIieifSiSpesaneckkSGLldl 217 (524)
T KOG4413|consen 141 DDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLR---NLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDL 217 (524)
T ss_pred cHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHh---HHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHH
Confidence 8899999999999876531 112211110011111 111112344566788888888777765543322 367777
Q ss_pred HHHHHhc-CChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcc
Q 006201 265 TAKAVRE-DEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAW 343 (657)
Q Consensus 265 ~~~~~~~-~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~ 343 (657)
+..-++. .|.-++..+++....+++++.. ..|... ..++..+.+.+.-.+.|+ +
T Consensus 218 LeaElkGteDtLVianciElvteLaeteHg-----------------reflaQ--eglIdlicnIIsGadsdP------f 272 (524)
T KOG4413|consen 218 LEAELKGTEDTLVIANCIELVTELAETEHG-----------------REFLAQ--EGLIDLICNIISGADSDP------F 272 (524)
T ss_pred HHHHhcCCcceeehhhHHHHHHHHHHHhhh-----------------hhhcch--hhHHHHHHHHhhCCCCCc------H
Confidence 7777776 5556888999999999887521 112111 124555555555333322 1
Q ss_pred hHhhhHHHHHHHHHhhcCC---------Cc---hhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcc-hHHHHHH
Q 006201 344 NIAMAGGTCLGLVARTVGD---------DI---VPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKL-VPLVNIA 410 (657)
Q Consensus 344 ~~r~~a~~~L~~l~~~~~~---------~~---~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~-~~~~~~i 410 (657)
. ...++.-+.+.+|. .+ ++..+.-..+++..++....++|+.++|.+........+ ...-+.-
T Consensus 273 e----kfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppa 348 (524)
T KOG4413|consen 273 E----KFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPA 348 (524)
T ss_pred H----HHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChH
Confidence 1 11222223333332 11 222223233455667778899999999998865311111 0000111
Q ss_pred HHHHHHHhcCCCcHH-HHHHHHHHHHHHHhhh
Q 006201 411 LNFMLTALMQDPNNH-VKDTTAWTLGRMFEFL 441 (657)
Q Consensus 411 ~~~l~~~l~~d~~~~-vr~~a~~~l~~l~~~~ 441 (657)
...++... .|.+.. -+.++++++..++...
T Consensus 349 aehllara-fdqnahakqeaaihaLaaIagel 379 (524)
T KOG4413|consen 349 AEHLLARA-FDQNAHAKQEAAIHALAAIAGEL 379 (524)
T ss_pred HHHHHHHH-hcccccchHHHHHHHHHHhhccc
Confidence 22333333 344433 3456778887777654
No 95
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.04 E-value=3.5e-05 Score=59.92 Aligned_cols=84 Identities=25% Similarity=0.312 Sum_probs=65.7
Q ss_pred HHHHhhh-cCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCC
Q 006201 370 PFVEENI-TKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLET 448 (657)
Q Consensus 370 ~~l~~~l-~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 448 (657)
|.+.+.+ ++++|.+|..++.+|+.+. -+..++.+...+ +|+++.||.+|++++|++..
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i~~--------- 60 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELL-KDEDPMVRRAAARALGRIGD--------- 60 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHH-TSSSHHHHHHHHHHHHCCHH---------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC---------
Confidence 4555556 7889999999999999332 135688899999 99999999999999997743
Q ss_pred ccCCcccHHHHHHHHHHHccc--chHHHHHHHHHHH
Q 006201 449 PIINQGNCQQIISVLLQSMKD--VPNVAEKACGALY 482 (657)
Q Consensus 449 ~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~ 482 (657)
+..++.|.+.+.+ +..||..|..+|+
T Consensus 61 --------~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 --------PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 4466788887875 4567888888874
No 96
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.95 E-value=0.00058 Score=60.95 Aligned_cols=133 Identities=11% Similarity=0.146 Sum_probs=94.6
Q ss_pred ChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHH
Q 006201 144 PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRV 223 (657)
Q Consensus 144 ~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~ 223 (657)
++.+|..++.+++.++..+ |.. ++..+|.+...|+ |+++.||+.|+.++..++.- .+.. .++.++..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~-~~~-----ve~~~~~l~~~L~--D~~~~VR~~al~~Ls~Li~~---d~ik--~k~~l~~~ 67 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY-PNL-----VEPYLPNLYKCLR--DEDPLVRKTALLVLSHLILE---DMIK--VKGQLFSR 67 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC-cHH-----HHhHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHc---Ccee--ehhhhhHH
Confidence 4678999999999999988 443 4566778888888 89999999999999998752 2211 12455555
Q ss_pred HHhhccCCcHHHHHHHHHHHHHHHHH-HHHhhHHhHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHHhH
Q 006201 224 VCEATLSPEVKIRQAAFECLVAISST-YYEKLAPYIQDIFNITAKAVR-----EDEEPVALQAIEFWSSVCD 289 (657)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~l~~~~~~~~~-----~~~~~v~~~a~~~~~~l~~ 289 (657)
+...+.|+++++|..+..++.++... .+..+..++++++..+-...+ ..+.+-+...+.|+.....
T Consensus 68 ~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 68 ILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcC
Confidence 56677899999999999999999987 566565555555543332222 2344556667777666554
No 97
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=0.001 Score=67.80 Aligned_cols=248 Identities=15% Similarity=0.126 Sum_probs=161.5
Q ss_pred chHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCC-CC----cchHHHHHHHHHHHHH
Q 006201 343 WNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPS-PE----KLVPLVNIALNFMLTA 417 (657)
Q Consensus 343 ~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~-~~----~~~~~~~~i~~~l~~~ 417 (657)
+++|..|.+.|-.+++ |-..-..+.....+.+.|.+-.+|.+|+.++...++-+. +. .-....+..+..+...
T Consensus 212 ~~Vrt~A~eglL~L~e--g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~ 289 (823)
T KOG2259|consen 212 FRVRTHAVEGLLALSE--GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRA 289 (823)
T ss_pred cchHHHHHHHHHhhcc--cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHH
Confidence 6899999999988888 444455556666677888889999999999888776541 11 1123456677778888
Q ss_pred hcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHH--------------------------------------
Q 006201 418 LMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQI-------------------------------------- 459 (657)
Q Consensus 418 l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~i-------------------------------------- 459 (657)
+ .|.+..||..|++++|.|...-. +. .....-+++
T Consensus 290 v-~D~sl~VRV~AaK~lG~~~~vSe-e~-----i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~ 362 (823)
T KOG2259|consen 290 V-RDRSLSVRVEAAKALGEFEQVSE-EI-----IQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEED 362 (823)
T ss_pred H-hcCceeeeehHHHHhchHHHhHH-HH-----HHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhc
Confidence 8 99999999999999987754311 00 000011111
Q ss_pred ------------HHHHHHHcccc-hHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHH
Q 006201 460 ------------ISVLLQSMKDV-PNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTA 526 (657)
Q Consensus 460 ------------l~~l~~~l~d~-~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~ 526 (657)
.-+++.+|.|. .+||.+|..+++.+...- ..|....+..|..++++.- ..+|..
T Consensus 363 d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss----------P~FA~~aldfLvDMfNDE~---~~VRL~ 429 (823)
T KOG2259|consen 363 DEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS----------PGFAVRALDFLVDMFNDEI---EVVRLK 429 (823)
T ss_pred cccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC----------CCcHHHHHHHHHHHhccHH---HHHHHH
Confidence 22455556663 688999999988887541 2477777888888888753 678888
Q ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHH
Q 006201 527 AYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYA 606 (657)
Q Consensus 527 ~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 606 (657)
++.+|..++....- -...++.+++.+... + ..+|..+. .+.....-. -...+
T Consensus 430 ai~aL~~Is~~l~i-----~eeql~~il~~L~D~-----------s--~dvRe~l~----elL~~~~~~------d~~~i 481 (823)
T KOG2259|consen 430 AIFALTMISVHLAI-----REEQLRQILESLEDR-----------S--VDVREALR----ELLKNARVS------DLECI 481 (823)
T ss_pred HHHHHHHHHHHhee-----cHHHHHHHHHHHHhc-----------C--HHHHHHHH----HHHHhcCCC------cHHHH
Confidence 99999888887431 223344555555432 1 13443232 333333322 22466
Q ss_pred HHHHHHHHHHHcccCCcchhhHHHHHHHHHHHhch
Q 006201 607 DQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGL 641 (657)
Q Consensus 607 ~~i~~~l~~~l~~~~~~v~~~~~~~l~~l~~~~g~ 641 (657)
..++..+++.|... +.-|.+.+.|++++++..+.
T Consensus 482 ~m~v~~lL~~L~ky-PqDrd~i~~cm~~iGqnH~~ 515 (823)
T KOG2259|consen 482 DMCVAHLLKNLGKY-PQDRDEILRCMGRIGQNHRR 515 (823)
T ss_pred HHHHHHHHHHhhhC-CCCcHHHHHHHHHHhccChh
Confidence 77777777777763 45578888999888876553
No 98
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.04 Score=58.03 Aligned_cols=264 Identities=13% Similarity=0.142 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHhc---CCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHH
Q 006201 18 TVRKQAEESLKQYQEQNLPGFLLSLAGELVN---DEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIK 94 (657)
Q Consensus 18 ~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~---~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~ 94 (657)
.+|-.||.-+..+-.+-..-..+.+...+.+ --.+..+.-+-+.++|..+.+...-..-. .+..++ ...-+.
T Consensus 412 ~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~---l~~~~d--F~~Wl~ 486 (978)
T KOG1993|consen 412 NLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYE---LSNILD--FDKWLQ 486 (978)
T ss_pred ccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHH---HHhcCC--HHHHHH
Confidence 4788888888876554223344455555522 11233444455555565544321100000 001111 111122
Q ss_pred HHHHHhcCC--CC-hHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCC-ChhHHHHHHHHHHHHhhhcc--ccccc
Q 006201 95 SFILKTLSS--PA-HDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQL-PPHTKQATLETLGYICEEVS--SDAVE 168 (657)
Q Consensus 95 ~~ll~~l~~--~~-~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~~l~~l~~i~~~~~--~~~l~ 168 (657)
+.++.-+.. ++ ..+|+..|-.++.-.....+...-|-+...+++.+++. |..+|-.+.+.+...+++++ ++.+
T Consensus 487 ~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsF- 565 (978)
T KOG1993|consen 487 EALLPELANDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSF- 565 (978)
T ss_pred HhhCHHhhhcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhh-
Confidence 333333332 22 68899999998887765544334456667777778877 67888999999999999863 4455
Q ss_pred hhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhcc--CCcHHHHHHHHHHHHHH
Q 006201 169 QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATL--SPEVKIRQAAFECLVAI 246 (657)
Q Consensus 169 ~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~~~l~~l 246 (657)
.++.+.++..+.+.+.. -..-+.|...+..++.++..+++.... ....+++.+..+-. ...+-.|.+.+.+|..+
T Consensus 566 lp~lenlf~~lfkll~~-~~e~Dtk~~VL~~ls~lI~r~~e~I~P--~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~l 642 (978)
T KOG1993|consen 566 LPYLENLFVLLFKLLKA-VEECDTKTSVLNLLSTLIERVSEHIAP--YASTIVQYLPLLWEESEEEPLLRCALLATLRNL 642 (978)
T ss_pred hhhHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHH
Confidence 57777777777777764 355678899999999988876654431 11344444433332 24455677788888888
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHHhHH
Q 006201 247 SSTYYEKLAPYIQDIFNITAKAVREDEE---PVALQAIEFWSSVCDE 290 (657)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~v~~~a~~~~~~l~~~ 290 (657)
+..-+..-.+..+-+++.+-.+..-..| ..-..+++.|.+....
T Consensus 643 V~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n 689 (978)
T KOG1993|consen 643 VNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMN 689 (978)
T ss_pred HHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhc
Confidence 7765432112222223322222111122 3456789999988764
No 99
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.93 E-value=0.0008 Score=65.96 Aligned_cols=191 Identities=14% Similarity=0.151 Sum_probs=129.8
Q ss_pred HHHHHHhhccCCcHHHHHHHHHHHHH-HHHHHHHhhHHhHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHhHHHHHhhhh
Q 006201 220 IMRVVCEATLSPEVKIRQAAFECLVA-ISSTYYEKLAPYIQDIFNITAKAVRE-DEEPVALQAIEFWSSVCDEEIDILEE 297 (657)
Q Consensus 220 il~~l~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~v~~~a~~~~~~l~~~~~~~~~~ 297 (657)
+.+.+..+-.+...+-++.++.-+.. +++........|..+++..++..+.+ .++.++..|++.+...+...++...
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~- 366 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLF- 366 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhh-
Confidence 33343333333344556666654444 44443344567888899888888888 7778899999999888876433211
Q ss_pred cCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhc
Q 006201 298 YGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENIT 377 (657)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~ 377 (657)
+...-.+.+++.. -. | -..-..|.++..|+..++...|...+..+.|.|..
T Consensus 367 --------------DstE~ai~K~Lea----a~----d----s~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt--- 417 (516)
T KOG2956|consen 367 --------------DSTEIAICKVLEA----AK----D----SQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT--- 417 (516)
T ss_pred --------------chHHHHHHHHHHH----Hh----C----CchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc---
Confidence 1122222222221 11 1 11136788888999999999888777777776654
Q ss_pred CcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhc
Q 006201 378 KQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLH 442 (657)
Q Consensus 378 ~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~ 442 (657)
.+...--+++..+..+.+..+.+.+...++.+.|.+++.. ++.+..||.+|.+||-.+....+
T Consensus 418 -~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay-~S~SS~VRKtaVfCLVamv~~vG 480 (516)
T KOG2956|consen 418 -ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAY-DSTSSTVRKTAVFCLVAMVNRVG 480 (516)
T ss_pred -CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHh-cCchHHhhhhHHHhHHHHHHHHh
Confidence 3334445666688889988877778888999999999999 99999999999999988888765
No 100
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.93 E-value=0.019 Score=61.85 Aligned_cols=346 Identities=14% Similarity=0.102 Sum_probs=189.2
Q ss_pred HHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhH-HHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhh
Q 006201 219 YIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYI-QDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEE 297 (657)
Q Consensus 219 ~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~ 297 (657)
.+++.|...++.++.++...++.+|..+.-. .+.-.... ..+++.+.+.+...+++.+..++..+..++-...-
T Consensus 290 ~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~---- 364 (708)
T PF05804_consen 290 GIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPEL---- 364 (708)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHH----
Confidence 4677788888888888888888888887632 21111111 25777777788888888999999998888753200
Q ss_pred cCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhc-------CCCchhchHH
Q 006201 298 YGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV-------GDDIVPLVMP 370 (657)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~-------~~~~~~~l~~ 370 (657)
...+++. .++|.+...+.. + +.+..+...|..++..- ..+.+|.++.
T Consensus 365 ------------R~~mV~~---GlIPkLv~LL~d--------~---~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~ 418 (708)
T PF05804_consen 365 ------------RSQMVSL---GLIPKLVELLKD--------P---NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQ 418 (708)
T ss_pred ------------HHHHHHC---CCcHHHHHHhCC--------C---chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHH
Confidence 0112211 234444444431 1 23445566666665421 1234555555
Q ss_pred HHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHH-HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCc
Q 006201 371 FVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVN-IALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETP 449 (657)
Q Consensus 371 ~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~-~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 449 (657)
.+.. .++.++....+..+..++... ........ +.++.+++...+...+ ..++++.+++.+-+
T Consensus 419 ~Ll~---~~~~~v~~eliaL~iNLa~~~--rnaqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~------- 482 (708)
T PF05804_consen 419 MLLE---NSEEEVQLELIALLINLALNK--RNAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHDG------- 482 (708)
T ss_pred HHHh---CCCccccHHHHHHHHHHhcCH--HHHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcCc-------
Confidence 4433 233333333333333344321 11111111 2234444322033322 23466777776542
Q ss_pred cCCcccHHHHHHHHHHHccc--chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHH--HHHHHHHHhhccccchhhhHHH
Q 006201 450 IINQGNCQQIISVLLQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQ--EIVQALLTVTHREDAGESRLRT 525 (657)
Q Consensus 450 ~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~--~i~~~L~~~l~~~~~~~~~~~~ 525 (657)
.....+...+..+...+.. +......+..+|+++.-. .-....++. .+++.|.+.+..... +.++..
T Consensus 483 -~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~-------~ld~~~ll~~~~llp~L~~~L~~g~~-~dDl~L 553 (708)
T PF05804_consen 483 -PLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIP-------DLDWAQLLQEYNLLPWLKDLLKPGAS-EDDLLL 553 (708)
T ss_pred -hHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccC-------CcCHHHHHHhCCHHHHHHHHhCCCCC-ChHHHH
Confidence 1233445555666666553 456666676666666421 123344443 577777777764433 345655
Q ss_pred HHHHHHHHHHHhcccccHHHHH--HHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhh
Q 006201 526 AAYETLNEVVRCSTDETAPMVM--QLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFM 603 (657)
Q Consensus 526 ~~~~al~~l~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 603 (657)
++.-.+|+++. .+.+.+.+. .+++.+++.++... +||. .++.++-.+.+-+-.. ++|..+.
T Consensus 554 E~Vi~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kq------eDdE--------~VlQil~~f~~ll~h~-~tr~~ll 616 (708)
T PF05804_consen 554 EVVILLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQ------EDDE--------IVLQILYVFYQLLFHE-ETREVLL 616 (708)
T ss_pred HHHHHHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhC------chHH--------HHHHHHHHHHHHHcCh-HHHHHHH
Confidence 67777777664 234455544 57778888887652 2221 2344444444444333 2344333
Q ss_pred HHHHHHHHHHHHHHcccCCcchhhHHHHHHHHHHH
Q 006201 604 QYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYA 638 (657)
Q Consensus 604 ~~~~~i~~~l~~~l~~~~~~v~~~~~~~l~~l~~~ 638 (657)
.- ..+..+++..+.+.+.++|+.+-.++..++..
T Consensus 617 ~~-~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 617 KE-TEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred hc-cchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 22 35889999999999999999999999888863
No 101
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.89 E-value=1.2e-05 Score=55.85 Aligned_cols=54 Identities=28% Similarity=0.345 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHH
Q 006201 424 NHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFL 484 (657)
Q Consensus 424 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l 484 (657)
|.||.+|+++||+++...+. ...++.+.+++.|...|.| ++.||..|+++|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~-------~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPE-------LLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHH-------HHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHH-------HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 68999999999998876542 4567999999999999997 689999999999854
No 102
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.0089 Score=59.32 Aligned_cols=169 Identities=14% Similarity=0.154 Sum_probs=128.8
Q ss_pred CCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Q 006201 361 GDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEF 440 (657)
Q Consensus 361 ~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~ 440 (657)
+...++.++..+-....+..|+.|......++.+....- -.-.+.+.+++..+.... .||+..+|..|+..|++....
T Consensus 211 ~~~~~~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~~-l~~~~lL~s~~~~la~ka-~dp~a~~r~~a~r~L~~~as~ 288 (533)
T KOG2032|consen 211 QDLEMGKILAQLLSSITSEKENGRITDIAFFAELKRPKE-LDKTGLLGSVLLSLANKA-TDPSAKSRGMACRGLGNTASG 288 (533)
T ss_pred CCccHHHHHhhcccccchhcccchHHHHHHHHHHhCccc-ccccccHHHHHHHHHHhc-cCchhHHHHHHHHHHHHHhcc
Confidence 333344444333344455668999988888888776421 111245667777777777 899999999999999999998
Q ss_pred hccCcCCCccCCcccHHHHHHHHHHHccc--chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccc
Q 006201 441 LHGSTLETPIINQGNCQQIISVLLQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDA 518 (657)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~ 518 (657)
.++ ....+...++..++.+|-| +..|...|..+|..+.+... ...+.+|+-++--.+.++..+.+
T Consensus 289 ~P~-------kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~-----~~~l~~~~l~ialrlR~l~~se~- 355 (533)
T KOG2032|consen 289 APD-------KVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKAS-----NDDLESYLLNIALRLRTLFDSED- 355 (533)
T ss_pred CcH-------HHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhh-----hcchhhhchhHHHHHHHHHHhcC-
Confidence 753 4567889999999999986 58899999999999888754 45788999998888888887765
Q ss_pred hhhhHHHHHHHHHHHHHHhcccccHHHH
Q 006201 519 GESRLRTAAYETLNEVVRCSTDETAPMV 546 (657)
Q Consensus 519 ~~~~~~~~~~~al~~l~~~~~~~~~~~~ 546 (657)
.++|..++-.++.++...|.....++
T Consensus 356 --~~~R~aa~~Lfg~L~~l~g~~~e~~F 381 (533)
T KOG2032|consen 356 --DKMRAAAFVLFGALAKLAGGGWEEFF 381 (533)
T ss_pred --hhhhhhHHHHHHHHHHHcCCCchhhh
Confidence 68899999999999999997655543
No 103
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.82 E-value=0.042 Score=54.36 Aligned_cols=156 Identities=17% Similarity=0.207 Sum_probs=97.5
Q ss_pred CcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc------chHHHHHHHHHHHHHHhhccCCCCCC
Q 006201 422 PNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD------VPNVAEKACGALYFLAQGFEDAISPS 495 (657)
Q Consensus 422 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d------~~~v~~~a~~al~~l~~~~~~~~~~~ 495 (657)
.+-+||..++..||++...... ..+..+..+++.-...+.+ +-+|+=+||.++++++++-. .+
T Consensus 496 d~dkV~~navraLgnllQvlq~-------i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a----~~ 564 (728)
T KOG4535|consen 496 DKDKVKSNAVRALGNLLQFLQP-------IEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPA----LP 564 (728)
T ss_pred hhhhhhhHHHHHHhhHHHHHHH-------hhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcc----cc
Confidence 4678999999999999998741 3345556666665555543 36899999999999998621 11
Q ss_pred CCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHH
Q 006201 496 SPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQN 575 (657)
Q Consensus 496 ~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ 575 (657)
-.-.+..+.+++.|+.++.+.. +.++|..+..+|....+..+ +...+.-.+..++..+.....- .+-.+...+-
T Consensus 565 lq~~~wA~~~F~~L~~Lv~~~~--NFKVRi~AA~aL~vp~~re~--~~d~~~Lsw~~lv~aLi~s~~~--v~f~eY~~~D 638 (728)
T KOG4535|consen 565 LQTAPWASQAFNALTSLVTSCK--NFKVRIRAAAALSVPGKREQ--YGDQYALSWNALVTALQKSEDT--IDFLEYKYCD 638 (728)
T ss_pred ccCCCchHHHHHHHHHHHHHhc--cceEeehhhhhhcCCCCccc--chhHHhHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 1224678888888888887766 57888888888776665544 3344555555665555443210 0011112233
Q ss_pred HHHHHHHHHHHHHHHHhCC
Q 006201 576 EIQGLLCGCLQVIIQKLGS 594 (657)
Q Consensus 576 ~~~~~~~~~l~~l~~~~~~ 594 (657)
.++..++.++..+.....+
T Consensus 639 sl~~q~c~av~hll~la~S 657 (728)
T KOG4535|consen 639 SLRTQICQALIHLLSLASS 657 (728)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 4555566666655554444
No 104
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.82 E-value=0.075 Score=57.11 Aligned_cols=138 Identities=22% Similarity=0.180 Sum_probs=73.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhc-CCCChhHHHHHHHHHhhhcccchhhhHHHhhhhc
Q 006201 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVN-DEKPVESRKLAGLILKNALDAKEQHRKFELVQRW 82 (657)
Q Consensus 4 ~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~-~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~ 82 (657)
-+..++....+.|.++++--.-+|..+.+.+|...+..+=.+..+ .++++.+|.+|...+...=
T Consensus 56 Lf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~--------------- 120 (757)
T COG5096 56 LFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLR--------------- 120 (757)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcC---------------
Confidence 345556666666666666666666666655433222222222222 1346666666666555411
Q ss_pred ccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCch--HHHHHHHhhcCCChhHHHHHHHHHHHHhh
Q 006201 83 LSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPE--LIGALLSNIHQLPPHTKQATLETLGYICE 160 (657)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~--l~~~l~~~l~~~~~~~~~~~l~~l~~i~~ 160 (657)
.++...++...+.+++.++.+.||+.|+.+++.+.+.+ + +..++ +...+...+.+.++.+...|+..|..+..
T Consensus 121 ---~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld-~-~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 121 ---VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD-K-DLYHELGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred ---hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC-H-hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 12233445555666666666677777777666666554 2 23333 23444444556666666666666666544
Q ss_pred h
Q 006201 161 E 161 (657)
Q Consensus 161 ~ 161 (657)
.
T Consensus 196 e 196 (757)
T COG5096 196 E 196 (757)
T ss_pred h
Confidence 4
No 105
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.79 E-value=0.082 Score=56.68 Aligned_cols=224 Identities=16% Similarity=0.161 Sum_probs=143.9
Q ss_pred CcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHH
Q 006201 378 KQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQ 457 (657)
Q Consensus 378 ~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~ 457 (657)
+...-.|-+|+.++...+ +.+.+.++.+.++..+.... .+.+..|-...+.+|...++.-+ ......-.
T Consensus 502 ~~~~~~ki~a~~~~~~~~---~~~vl~~~~p~ild~L~qla-s~~s~evl~llmE~Ls~vv~~dp-------ef~as~~s 570 (1005)
T KOG2274|consen 502 DVPPPVKISAVRAFCGYC---KVKVLLSLQPMILDGLLQLA-SKSSDEVLVLLMEALSSVVKLDP-------EFAASMES 570 (1005)
T ss_pred CCCCchhHHHHHHHHhcc---CceeccccchHHHHHHHHHc-ccccHHHHHHHHHHHHHHhccCh-------hhhhhhhc
Confidence 334566777777777666 35777788899999998888 77888888888889888887643 23333334
Q ss_pred HHHHHHHHHcc---cchHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccc-hhhhHHHHHHHHHHH
Q 006201 458 QIISVLLQSMK---DVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDA-GESRLRTAAYETLNE 533 (657)
Q Consensus 458 ~il~~l~~~l~---d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~-~~~~~~~~~~~al~~ 533 (657)
.+.|.++..+. ++|.|...+-..+..+++.. ....|+.+..+|.+++.++.+.. ....+...+++.|.+
T Consensus 571 kI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-------~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLtt 643 (1005)
T KOG2274|consen 571 KICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-------ANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTT 643 (1005)
T ss_pred chhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-------HhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHH
Confidence 44554444433 35788888888888888753 45678999999999999976541 124566679999999
Q ss_pred HHHhcccccH-HHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHH--------hCCCcchhhHhhH
Q 006201 534 VVRCSTDETA-PMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQK--------LGSSEQTKYVFMQ 604 (657)
Q Consensus 534 l~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--------~~~~~~~~~~~~~ 604 (657)
+++..+.... -.+....|.+.+..-. ++|.. .++ .+-+|+..++.. -++.. +.
T Consensus 644 vvr~tp~pL~~~l~~~~FpaVak~tlH--------sdD~~---tlQ-~~~EcLra~Is~~~eq~~t~~~e~g-----~~- 705 (1005)
T KOG2274|consen 644 VLRNTPSPLPNLLICYAFPAVAKITLH--------SDDHE---TLQ-NATECLRALISVTLEQLLTWHDEPG-----HN- 705 (1005)
T ss_pred HHhcCCCCccHHHHHHHhHHhHhheee--------cCChH---HHH-hHHHHHHHHHhcCHHHHHhhccCCC-----cc-
Confidence 9999987532 3556666666655422 22221 233 466777766654 12211 21
Q ss_pred HHHHHHHHHHHHHcccCCcchhhHHHHHHHHHHHhch
Q 006201 605 YADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGL 641 (657)
Q Consensus 605 ~~~~i~~~l~~~l~~~~~~v~~~~~~~l~~l~~~~g~ 641 (657)
+.-||..+-+.|+ ++..+.+....|+++..+=.
T Consensus 706 -~~yImqV~sqLLd---p~~sds~a~~VG~lV~tLit 738 (1005)
T KOG2274|consen 706 -LWYIMQVLSQLLD---PETSDSAAAFVGPLVLTLIT 738 (1005)
T ss_pred -HHHHHHHHHHHcC---CccchhHHHHHhHHHHHHHH
Confidence 2344555555554 44556666677777765433
No 106
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.79 E-value=0.0023 Score=60.46 Aligned_cols=238 Identities=14% Similarity=0.158 Sum_probs=153.2
Q ss_pred HHhhhcCcchhhHHHHHHHHHHhhcCCCCCcc-hHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCcc
Q 006201 372 VEENITKQEWRQREAATYAFGSILEGPSPEKL-VPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPI 450 (657)
Q Consensus 372 l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~-~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 450 (657)
+..+++++++..|.-|+.+|+.+.+...++.+ ...+.-++......+ .| +..+..+ +..+..+...-.
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl-~D-~~~~~~~-l~gl~~L~~~~~-------- 72 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRL-DD-HACVQPA-LKGLLALVKMKN-------- 72 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHh-cc-HhhHHHH-HHHHHHHHhCcC--------
Confidence 45678899999999999999999887754434 335667778888888 54 3445444 667766664321
Q ss_pred CCcccHHHHHHHHHHHccc---chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHH
Q 006201 451 INQGNCQQIISVLLQSMKD---VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAA 527 (657)
Q Consensus 451 ~~~~~~~~il~~l~~~l~d---~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~ 527 (657)
........++..+.+..+. ....|..+...+..+++... ..+...-+.++..+++.+..... ++++ ..+
T Consensus 73 ~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~------~~l~~~~~~fv~~~i~~~~gEkD-PRnL-l~~ 144 (262)
T PF14500_consen 73 FSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR------EALQSMGDDFVYGFIQLIDGEKD-PRNL-LLS 144 (262)
T ss_pred CChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH------HHHHhchhHHHHHHHHHhccCCC-HHHH-HHH
Confidence 3345567777777765542 25788899999998887642 23455667888888888877653 2343 357
Q ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHh---hhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhH
Q 006201 528 YETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLE---AQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQ 604 (657)
Q Consensus 528 ~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 604 (657)
++.+..+++.... .++.. .+++.+.-..- .+.-++........++..+.+|+. . -..
T Consensus 145 F~l~~~i~~~~~~--~~~~e----~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~------s--------~~~ 204 (262)
T PF14500_consen 145 FKLLKVILQEFDI--SEFAE----DLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS------S--------TPL 204 (262)
T ss_pred HHHHHHHHHhccc--chhHH----HHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc------C--------cHh
Confidence 7777777776652 33444 33333332211 111111001112245555555552 1 112
Q ss_pred HHHHHHHHHHHHHcccCCcchhhHHHHHHHHHHHhc-hhhhhccc
Q 006201 605 YADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATG-LCHHRRCC 648 (657)
Q Consensus 605 ~~~~i~~~l~~~l~~~~~~v~~~~~~~l~~l~~~~g-~~f~~y~~ 648 (657)
|++..++.++.-|......++.+++.++..-+..+| ..+.+|..
T Consensus 205 fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~ 249 (262)
T PF14500_consen 205 FAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWS 249 (262)
T ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 566778889999998888899999999999999999 45777764
No 107
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=0.0011 Score=69.63 Aligned_cols=200 Identities=15% Similarity=0.163 Sum_probs=146.4
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhcc
Q 006201 411 LNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFE 489 (657)
Q Consensus 411 ~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~ 489 (657)
+...+..+ .|+.+.+|..++..+..+.+.-. ......-..++...+..+.| ++=|..+|...+..+|+...
T Consensus 729 ~qeai~sl-~d~qvpik~~gL~~l~~l~e~r~-------~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~ 800 (982)
T KOG4653|consen 729 LQEAISSL-HDDQVPIKGYGLQMLRHLIEKRK-------KATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP 800 (982)
T ss_pred HHHHHHHh-cCCcccchHHHHHHHHHHHHhcc-------hhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc
Confidence 45666778 99999999999999999988432 12334567889999999997 68899999999999998642
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhcCChh
Q 006201 490 DAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSD 569 (657)
Q Consensus 490 ~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~ 569 (657)
+ ..++.+.....+.-+.... +..+ .+=+++..++.+.|+.+..|...+...++...++ ++
T Consensus 801 e---------~il~dL~e~Y~s~k~k~~~-d~~l--kVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvre--------pd 860 (982)
T KOG4653|consen 801 E---------DILPDLSEEYLSEKKKLQT-DYRL--KVGEAILKVAQALGELVFKYKAVLINTFLSGVRE--------PD 860 (982)
T ss_pred h---------hhHHHHHHHHHhcccCCCc-ccee--hHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCC--------ch
Confidence 1 2333333333333333221 2344 3559999999999999999998777777665542 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHccc-CCcchhhHHHHHHHHHHHhchhhhhccc
Q 006201 570 EREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIR-SATAHEEAMLAIGALAYATGLCHHRRCC 648 (657)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~v~~~~~~~l~~l~~~~g~~f~~y~~ 648 (657)
...|...+..+|.++...... .+.++.+++..++.....+ +..+|..|.-.+..+.+.+|.+..|.+.
T Consensus 861 -----~~~RaSS~a~lg~Lcq~~a~~------vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr 929 (982)
T KOG4653|consen 861 -----HEFRASSLANLGQLCQLLAFQ------VSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILR 929 (982)
T ss_pred -----HHHHHhHHHHHHHHHHHHhhh------hhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHH
Confidence 246777888999988887765 5567777777777777664 6679999999999999999999998664
Q ss_pred c
Q 006201 649 W 649 (657)
Q Consensus 649 ~ 649 (657)
.
T Consensus 930 ~ 930 (982)
T KOG4653|consen 930 L 930 (982)
T ss_pred H
Confidence 3
No 108
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.77 E-value=0.046 Score=54.84 Aligned_cols=279 Identities=20% Similarity=0.194 Sum_probs=171.4
Q ss_pred cHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 006201 37 GFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVV 116 (657)
Q Consensus 37 ~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l 116 (657)
.....+...+.++ +..+|..|+..++..=. ....+.+...+.++++.+|..++.++
T Consensus 43 ~~~~~~~~~l~~~--~~~vr~~aa~~l~~~~~----------------------~~av~~l~~~l~d~~~~vr~~a~~aL 98 (335)
T COG1413 43 EAADELLKLLEDE--DLLVRLSAAVALGELGS----------------------EEAVPLLRELLSDEDPRVRDAAADAL 98 (335)
T ss_pred hhHHHHHHHHcCC--CHHHHHHHHHHHhhhch----------------------HHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3566677777763 78999999888665211 22445677889999999999999977
Q ss_pred HHHHhhhcCCCCCchHHHHHHHhhc-CCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCC---------
Q 006201 117 AKVAGIELPHKQWPELIGALLSNIH-QLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNAS--------- 186 (657)
Q Consensus 117 ~~i~~~~~~~~~~~~l~~~l~~~l~-~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~--------- 186 (657)
+.+. -+..++.++..+. +++..+|..+...|..+-..- . +..++..+.+.
T Consensus 99 g~~~--------~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~--------a----~~~l~~~l~~~~~~~a~~~~ 158 (335)
T COG1413 99 GELG--------DPEAVPPLVELLENDENEGVRAAAARALGKLGDER--------A----LDPLLEALQDEDSGSAAAAL 158 (335)
T ss_pred HccC--------ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh--------h----hHHHHHHhccchhhhhhhhc
Confidence 6543 3566777777777 689999999999998764422 1 22222333310
Q ss_pred -CCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHH
Q 006201 187 -ESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNIT 265 (657)
Q Consensus 187 -~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~ 265 (657)
.....+|..++..++.+-. ....+.+...+.+.+..+|..+...++.+.... ..+...+
T Consensus 159 ~~~~~~~r~~a~~~l~~~~~------------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l 218 (335)
T COG1413 159 DAALLDVRAAAAEALGELGD------------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLL 218 (335)
T ss_pred cchHHHHHHHHHHHHHHcCC------------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHH
Confidence 1223577777777666311 234455556666777799999999999876543 3445556
Q ss_pred HHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchH
Q 006201 266 AKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNI 345 (657)
Q Consensus 266 ~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~ 345 (657)
...+.+.+..+|..++..+..+.... ..+.+...+.. ..|..
T Consensus 219 ~~~~~~~~~~vr~~~~~~l~~~~~~~-----------------------------~~~~l~~~l~~---------~~~~~ 260 (335)
T COG1413 219 VKALSDESLEVRKAALLALGEIGDEE-----------------------------AVDALAKALED---------EDVIL 260 (335)
T ss_pred HHHhcCCCHHHHHHHHHHhcccCcch-----------------------------hHHHHHHHHhc---------cchHH
Confidence 66778888889888886544443211 11222222221 12333
Q ss_pred hhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHH
Q 006201 346 AMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNH 425 (657)
Q Consensus 346 r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~ 425 (657)
+..+...+. +.. .+.-...+...+.+.+|..|..+..+++.+..... ........ .+....
T Consensus 261 ~~~~~~~~~------~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~a~~~~~-~~~~~~ 321 (335)
T COG1413 261 ALLAAAALG------ALD-LAEAALPLLLLLIDEANAVRLEAALALGQIGQEKA-----------VAALLLAL-EDGDAD 321 (335)
T ss_pred HHHHHHHhc------ccC-chhhHHHHHHHhhcchhhHHHHHHHHHHhhcccch-----------HHHHHHHh-cCCchh
Confidence 433333332 111 12222333445567889999999999999887642 13344455 777788
Q ss_pred HHHHHHHHHHH
Q 006201 426 VKDTTAWTLGR 436 (657)
Q Consensus 426 vr~~a~~~l~~ 436 (657)
+|..+......
T Consensus 322 ~~~~~~~~~~~ 332 (335)
T COG1413 322 VRKAALILLEG 332 (335)
T ss_pred hHHHHHHHHHh
Confidence 88877766543
No 109
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.73 E-value=0.00091 Score=62.71 Aligned_cols=217 Identities=12% Similarity=0.091 Sum_probs=129.8
Q ss_pred CcchhhHHHHHHHHHHhhcCCCCCcchHHHH--HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCccc
Q 006201 378 KQEWRQREAATYAFGSILEGPSPEKLVPLVN--IALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGN 455 (657)
Q Consensus 378 ~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~--~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 455 (657)
+.++.+++.++.+++..+... .....+. ..++.+.+.+ .++++.+|..|++++..++..... ....+.|
T Consensus 24 t~dp~i~e~al~al~n~aaf~---~nq~~Ir~~Ggi~lI~~lL-~~p~~~vr~~AL~aL~Nls~~~en-----~~~Ik~~ 94 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFP---FNQDIIRDLGGISLIGSLL-NDPNPSVREKALNALNNLSVNDEN-----QEQIKMY 94 (254)
T ss_pred CCChHHHHHHHHHHHhhccCh---hHHHHHHHcCCHHHHHHHc-CCCChHHHHHHHHHHHhcCCChhh-----HHHHHHH
Confidence 456889999999999977542 1122233 3578888899 999999999999999988876531 0112234
Q ss_pred HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHH
Q 006201 456 CQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVV 535 (657)
Q Consensus 456 ~~~il~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~ 535 (657)
+..++..+...- -+..++..+.++|.++.-. ......+...++.++.++...+ ..+|..++.+|..+.
T Consensus 95 i~~Vc~~~~s~~-lns~~Q~agLrlL~nLtv~--------~~~~~~l~~~i~~ll~LL~~G~---~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 95 IPQVCEETVSSP-LNSEVQLAGLRLLTNLTVT--------NDYHHMLANYIPDLLSLLSSGS---EKTKVQVLKVLVNLS 162 (254)
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHHccCCC--------cchhhhHHhhHHHHHHHHHcCC---hHHHHHHHHHHHHhc
Confidence 444444333310 1578998999999988532 2233445556777778887654 577888999888887
Q ss_pred HhcccccHHHH-HHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcc--------hhhHhhH--
Q 006201 536 RCSTDETAPMV-MQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQ--------TKYVFMQ-- 604 (657)
Q Consensus 536 ~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--------~~~~~~~-- 604 (657)
+.-.. ....+ .+.++.++..++. ++++ ++.-.++..+..+...++++.. ..+.|.-
T Consensus 163 ~np~~-~~~Ll~~q~~~~~~~Lf~~--------~~~~----~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~ 229 (254)
T PF04826_consen 163 ENPDM-TRELLSAQVLSSFLSLFNS--------SESK----ENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFG 229 (254)
T ss_pred cCHHH-HHHHHhccchhHHHHHHcc--------CCcc----HHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHc
Confidence 65431 11111 2334444444443 1122 2222477788888787777631 0122211
Q ss_pred HHHHHHHHHHHHHcccCCcchhhH
Q 006201 605 YADQMMGLFLRVFAIRSATAHEEA 628 (657)
Q Consensus 605 ~~~~i~~~l~~~l~~~~~~v~~~~ 628 (657)
-...+-..+.......|++||+.+
T Consensus 230 e~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 230 ESSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred cHHHHHHHHHHHHcCCCHHHhhhc
Confidence 123355555556666777777654
No 110
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=97.71 E-value=0.088 Score=55.52 Aligned_cols=381 Identities=13% Similarity=0.137 Sum_probs=191.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhc-Cc-ccH---HHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhh
Q 006201 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQ-NL-PGF---LLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELV 79 (657)
Q Consensus 5 l~~~l~~~~s~d~~~r~~A~~~L~~~~~~-~~-~~~---~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~ 79 (657)
+..+|..+.|++..+|++.-+-|+++.+. +. +.. +..|++...+++.+.-+|.++.++++.-+.
T Consensus 25 L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~----------- 93 (501)
T PF13001_consen 25 LPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFD----------- 93 (501)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhh-----------
Confidence 46678888899999999999999877553 11 332 455777777766679999999999998665
Q ss_pred hhcccCChHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHHHhhh----cCCCCCchHHHHHHHhhcCCChhHHHHHH
Q 006201 80 QRWLSLDSSVKAQIKSFILKTLSSPA---HDARSTASQVVAKVAGIE----LPHKQWPELIGALLSNIHQLPPHTKQATL 152 (657)
Q Consensus 80 ~~~~~l~~~~~~~i~~~ll~~l~~~~---~~vr~~aa~~l~~i~~~~----~~~~~~~~l~~~l~~~l~~~~~~~~~~~l 152 (657)
.++.+.+..+.+.+++++..-. ......++..+-.+.+.. .| ..|.+.-........=.+.......+
T Consensus 94 ----Rl~~~e~~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~l~ 168 (501)
T PF13001_consen 94 ----RLDDEERRELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEP-PRGSKEDEKFRDSLGLSDFCDDVFLA 168 (501)
T ss_pred ----cCCHHHHHHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccc-cccchhhhcHHHHHhhcchHHHHHcc
Confidence 4788888888899999887432 222223333332233321 01 12221111111110000000000000
Q ss_pred HHHHHHh----------hhc---cccccch----------------hhH------------------hHHHHHHHhccCC
Q 006201 153 ETLGYIC----------EEV---SSDAVEQ----------------DHV------------------NKILTAVVQGMNA 185 (657)
Q Consensus 153 ~~l~~i~----------~~~---~~~~l~~----------------~~~------------------~~l~~~l~~~l~~ 185 (657)
.-+..+. ... .+..+.. ..+ ...++.++-+..
T Consensus 169 ~~~~~~~~l~~~~~~~~pgl~~~~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~sg~f~d~~~~~~~liAsa- 247 (501)
T PF13001_consen 169 PWFSKFLLLQPNRAYACPGLSPADPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLASGFFPDEERFPPLLIASA- 247 (501)
T ss_pred hhhccccccccccccCCCCCCCCCCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhcCCCcHhHHhheeeEEe-
Confidence 0000000 000 0000000 000 011111111112
Q ss_pred CCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHH--hhc-----cCCcHHHHHHHHHHHHHHHHHHHHhhHHhH
Q 006201 186 SESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVC--EAT-----LSPEVKIRQAAFECLVAISSTYYEKLAPYI 258 (657)
Q Consensus 186 ~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~--~~~-----~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 258 (657)
|++.+|...|-..|..+... +++......++.... ..- ..-++.+|..++..|++-... ....
T Consensus 248 -d~~~~V~~~ae~~LKr~~~~----~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A-----a~~~ 317 (501)
T PF13001_consen 248 -DSNSSVSDRAEDLLKRLSVS----LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA-----ATSF 317 (501)
T ss_pred -CCcchHHHHHHHHHhhcCCC----CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH-----HhCC
Confidence 44455555555555443221 222222233344333 100 124567777777777763221 1233
Q ss_pred HHHHHHHHHHHhcC--ChHHHHHHHHHH---HHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhc
Q 006201 259 QDIFNITAKAVRED--EEPVALQAIEFW---SSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQE 333 (657)
Q Consensus 259 ~~l~~~~~~~~~~~--~~~v~~~a~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ 333 (657)
+.++.++...+... ....+..+++|+ ...... .-...+..+-|.++..+-...
T Consensus 318 ~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~----------------------~~~~~l~~l~~~i~~~g~p~~ 375 (501)
T PF13001_consen 318 PNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKH----------------------ISPQILKLLRPVILSQGWPLI 375 (501)
T ss_pred ccHHHHHhccccCCccccccchhcchhhhcchHHhhh----------------------cCHHHHHHHHHHHHhcCcccc
Confidence 45566665666555 556777888887 443332 112223334444444332222
Q ss_pred Ccc---ccCCCcchHhhhHHHHHHHHHhhcCCCchh--chHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcch---H
Q 006201 334 EDQ---DQDEGAWNIAMAGGTCLGLVARTVGDDIVP--LVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLV---P 405 (657)
Q Consensus 334 ~d~---~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~--~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~---~ 405 (657)
++. ....++...|..+-++|+.++...+..+.. .++..+-+.+.++....|-+.--||++++.... .... .
T Consensus 376 ~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~-~~~~~~~~ 454 (501)
T PF13001_consen 376 QDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFK-DLPDDEDE 454 (501)
T ss_pred ccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHh-ccccchhH
Confidence 111 112233578999999999999988765422 345555556666777888888888888776542 1111 1
Q ss_pred HHHHHHHHHH-HHhcCCCcHHHHHHHHHHHHH
Q 006201 406 LVNIALNFML-TALMQDPNNHVKDTTAWTLGR 436 (657)
Q Consensus 406 ~~~~i~~~l~-~~l~~d~~~~vr~~a~~~l~~ 436 (657)
.....+..++ ... .+....+|.+|++...+
T Consensus 455 ~~~~~~~~l~~~~~-~~~~~~~R~~avk~an~ 485 (501)
T PF13001_consen 455 QKRLLLELLLLSYI-QSEVRSCRYAAVKYANA 485 (501)
T ss_pred HHHHHHHHHHHhhc-cchhHHHHHHHHHHHHH
Confidence 1222222233 233 55667788888755543
No 111
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.71 E-value=0.004 Score=55.57 Aligned_cols=99 Identities=13% Similarity=0.077 Sum_probs=77.5
Q ss_pred ChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCch
Q 006201 52 PVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPE 131 (657)
Q Consensus 52 ~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~ 131 (657)
++.+|..+.+.+.-...++ +...+...+.+..+|.++++.||+++..+++.+...++- ...+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~----------------~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i-k~k~~ 63 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY----------------PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI-KVKGQ 63 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC----------------cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce-eehhh
Confidence 3678888888888766532 223344556788999999999999999999999988754 23355
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHhhhcccccc
Q 006201 132 LIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAV 167 (657)
Q Consensus 132 l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l 167 (657)
++..+..++.|+++.+|..|..++..+.....++.+
T Consensus 64 l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i 99 (178)
T PF12717_consen 64 LFSRILKLLVDENPEIRSLARSFFSELLKKRNPNII 99 (178)
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHH
Confidence 668899999999999999999999999887435544
No 112
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.014 Score=57.90 Aligned_cols=135 Identities=20% Similarity=0.239 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhhhcCCCCC-----chHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccC
Q 006201 110 STASQVVAKVAGIELPHKQW-----PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMN 184 (657)
Q Consensus 110 ~~aa~~l~~i~~~~~~~~~~-----~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~ 184 (657)
+.--.-++.+++...|...| .+++..+.+...+++...|..++++|....... |+.. ..|...++..++.+|-
T Consensus 232 ~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~-P~kv-~th~~~~ldaii~gL~ 309 (533)
T KOG2032|consen 232 NGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGA-PDKV-RTHKTTQLDAIIRGLY 309 (533)
T ss_pred cchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccC-cHHH-HHhHHHHHHHHHHHHh
Confidence 33333444455544442223 345555555667888899999999999998886 6666 6788888888888888
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHH---HhhccCCcHHHHHHHHHHHHHHHHHHH
Q 006201 185 ASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVV---CEATLSPEVKIRQAAFECLVAISSTYY 251 (657)
Q Consensus 185 ~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l---~~~~~~~~~~~~~~~~~~l~~l~~~~~ 251 (657)
+ +.+.+|...++++|..+....... .....++++- ..+..+.+++.|.+++..++.++...+
T Consensus 310 D-~~~~~V~leam~~Lt~v~~~~~~~----~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g 374 (533)
T KOG2032|consen 310 D-DLNEEVQLEAMKCLTMVLEKASND----DLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAG 374 (533)
T ss_pred c-CCccHHHHHHHHHHHHHHHhhhhc----chhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcC
Confidence 6 556899999999999877643321 1112333332 345567889999999999999887654
No 113
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.70 E-value=0.002 Score=60.41 Aligned_cols=188 Identities=12% Similarity=0.072 Sum_probs=118.5
Q ss_pred ccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHH-----HHHHHhcCCCChHHHH
Q 006201 36 PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIK-----SFILKTLSSPAHDARS 110 (657)
Q Consensus 36 ~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~-----~~ll~~l~~~~~~vr~ 110 (657)
++.+..|+..|.. +.++.++..|...+.+.-.. +..++.|+ ..+...+.++++.+|.
T Consensus 11 ~~~l~~Ll~lL~~-t~dp~i~e~al~al~n~aaf-----------------~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~ 72 (254)
T PF04826_consen 11 AQELQKLLCLLES-TEDPFIQEKALIALGNSAAF-----------------PFNQDIIRDLGGISLIGSLLNDPNPSVRE 72 (254)
T ss_pred HHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccC-----------------hhHHHHHHHcCCHHHHHHHcCCCChHHHH
Confidence 4556778888886 56889999999888884321 12233333 4567778889999999
Q ss_pred HHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCC--ChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCC
Q 006201 111 TASQVVAKVAGIELPHKQWPELIGALLSNIHQL--PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASES 188 (657)
Q Consensus 111 ~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~ 188 (657)
.|..++..++...-....-...++.+.+.+.+. +...+.+++++|..+.-.- .. +..+...++.++..+. ..
T Consensus 73 ~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~---~~-~~~l~~~i~~ll~LL~--~G 146 (254)
T PF04826_consen 73 KALNALNNLSVNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN---DY-HHMLANYIPDLLSLLS--SG 146 (254)
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc---ch-hhhHHhhHHHHHHHHH--cC
Confidence 999999988765422123356777777765543 5677889999999885322 11 2334455677777777 56
Q ss_pred CHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccC-CcHHHHHHHHHHHHHHHHH
Q 006201 189 NNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLS-PEVKIRQAAFECLVAISST 249 (657)
Q Consensus 189 ~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~l~~l~~~ 249 (657)
+..+|..++++|.++.+-- ....+......+..+..+++. .+.++...++..+..+.+.
T Consensus 147 ~~~~k~~vLk~L~nLS~np--~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 147 SEKTKVQVLKVLVNLSENP--DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred ChHHHHHHHHHHHHhccCH--HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 7889999999999865410 000000011234444555544 3456666666666665443
No 114
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.70 E-value=0.0023 Score=69.46 Aligned_cols=187 Identities=12% Similarity=0.134 Sum_probs=145.1
Q ss_pred cchHhhhHHHHHHHHHhhcC----CCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHH
Q 006201 342 AWNIAMAGGTCLGLVARTVG----DDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTA 417 (657)
Q Consensus 342 ~~~~r~~a~~~L~~l~~~~~----~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~ 417 (657)
.|.-|..|.+.+..+....+ ......+...+.-...|.|-.+-.-++.++..|+.+.+ ....+|...+.|.++..
T Consensus 266 ~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr-~~~~~~~~~v~p~lld~ 344 (815)
T KOG1820|consen 266 KWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLR-PLFRKYAKNVFPSLLDR 344 (815)
T ss_pred chHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcc-hhhHHHHHhhcchHHHH
Confidence 49999988777777666544 12334444555556678888888888899999999874 56788999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCC
Q 006201 418 LMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSS 496 (657)
Q Consensus 418 l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~ 496 (657)
+ .+..+.+|.++..++-.++... .+..+.+.+..++.+ +|.++..+...+...+...++ ..
T Consensus 345 l-kekk~~l~d~l~~~~d~~~ns~-------------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~----~~ 406 (815)
T KOG1820|consen 345 L-KEKKSELRDALLKALDAILNST-------------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP----KT 406 (815)
T ss_pred h-hhccHHHHHHHHHHHHHHHhcc-------------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC----cC
Confidence 9 9999999999999988777744 357788888888887 899999999999999887653 23
Q ss_pred CCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccc-cHHHHHHHH
Q 006201 497 PLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDE-TAPMVMQLV 550 (657)
Q Consensus 497 ~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~-~~~~~~~l~ 550 (657)
.-..-...+++.+....++.+ ..+|.+++++++.+.+..|+. +..++..+-
T Consensus 407 ~~~~t~~~l~p~~~~~~~D~~---~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~ 458 (815)
T KOG1820|consen 407 VEKETVKTLVPHLIKHINDTD---KDVRKAALEAVAAVMKVHGEEVFKKLLKDLD 458 (815)
T ss_pred cchhhHHHHhHHHhhhccCCc---HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhc
Confidence 334556788888888888775 789999999999999999974 344444433
No 115
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.69 E-value=0.004 Score=64.33 Aligned_cols=157 Identities=18% Similarity=0.205 Sum_probs=93.6
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhH
Q 006201 95 SFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNK 174 (657)
Q Consensus 95 ~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~ 174 (657)
..++.+... +...++.+|+.|..+++.. | ..-.+.++.++.++.+++..+|..|++.|..+|+.- .+++..
T Consensus 26 ~~il~~~kg-~~k~K~Laaq~I~kffk~F-P-~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~------~~~v~k 96 (556)
T PF05918_consen 26 KEILDGVKG-SPKEKRLAAQFIPKFFKHF-P-DLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN------PEHVSK 96 (556)
T ss_dssp HHHHHGGGS--HHHHHHHHHHHHHHHCC--G-GGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--------T-HHH
T ss_pred HHHHHHccC-CHHHHHHHHHHHHHHHhhC-h-hhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH------HHHHhH
Confidence 345555553 5789999999999999874 6 355678889999999999999999999999998876 345677
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhc---cCCcHHHHHHHHHHHHHHHHHHH
Q 006201 175 ILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEAT---LSPEVKIRQAAFECLVAISSTYY 251 (657)
Q Consensus 175 l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~---~~~~~~~~~~~~~~l~~l~~~~~ 251 (657)
+...|.|.|.+ .++.-...+=++|.+++..-+ ...+..++..+ ...++.+|..+++.+..-+...+
T Consensus 97 vaDvL~QlL~t--dd~~E~~~v~~sL~~ll~~d~---------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~ 165 (556)
T PF05918_consen 97 VADVLVQLLQT--DDPVELDAVKNSLMSLLKQDP---------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLK 165 (556)
T ss_dssp HHHHHHHHTT-----HHHHHHHHHHHHHHHHH-H---------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-
T ss_pred HHHHHHHHHhc--ccHHHHHHHHHHHHHHHhcCc---------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCc
Confidence 78888888884 445545555566666544211 22333333222 24567889998888865433222
Q ss_pred -HhhHH--hH-HHHHHHHHHHHhc
Q 006201 252 -EKLAP--YI-QDIFNITAKAVRE 271 (657)
Q Consensus 252 -~~~~~--~~-~~l~~~~~~~~~~ 271 (657)
+.+.| -+ ..++..+...++|
T Consensus 166 ~~~~~p~~E~e~~i~~~ikkvL~D 189 (556)
T PF05918_consen 166 PELLTPQKEMEEFIVDEIKKVLQD 189 (556)
T ss_dssp TTTS---HHHHHHHHHHHHHHCTT
T ss_pred HHHhhchHHHHHHHHHHHHHHHHh
Confidence 23331 12 2344445555655
No 116
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.12 Score=55.38 Aligned_cols=356 Identities=15% Similarity=0.156 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchh
Q 006201 233 VKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKA-VREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCF 311 (657)
Q Consensus 233 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 311 (657)
+..-.+++-++..+++..+..-.+.++.+++..... ....++.....+.+.+++++.--.+ .+
T Consensus 481 ~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e----------------~P 544 (982)
T KOG2022|consen 481 LNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGE----------------HP 544 (982)
T ss_pred HHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhc----------------CC
Confidence 556677888888888877766667777777765443 2224666777777777776652100 11
Q ss_pred hHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHH---hhhcCcc--hhhHHH
Q 006201 312 YFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVE---ENITKQE--WRQREA 386 (657)
Q Consensus 312 ~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~---~~l~~~~--~~~r~a 386 (657)
.+ ++.-+|.+++.+-..+ ....+...|..+++.++.+..|...+++. +.+...+ ...|..
T Consensus 545 ~~----ln~sl~~L~~~Lh~sk-----------~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~k 609 (982)
T KOG2022|consen 545 MY----LNPSLPLLFQGLHNSK-----------ESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLK 609 (982)
T ss_pred cc----cCchHHHHHHHhcCch-----------HHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHH
Confidence 22 3344667776553211 12246677999999988877776655543 3343322 467888
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCC------CcHHHHHHHH---HHHHHHHhhhccCcCC----CccCC-
Q 006201 387 ATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQD------PNNHVKDTTA---WTLGRMFEFLHGSTLE----TPIIN- 452 (657)
Q Consensus 387 al~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d------~~~~vr~~a~---~~l~~l~~~~~~~~~~----~~~~~- 452 (657)
...++|.+.....++....|+..++..++..+ +. +.+.-+.+.+ .+++.+....-++.+. .|...
T Consensus 610 lm~sIGyvls~~~pEe~~kyl~~lin~il~ql-e~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~ 688 (982)
T KOG2022|consen 610 LMKSIGYVLSRLKPEEIPKYLMKLINPILSQL-EINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQRE 688 (982)
T ss_pred HHHHHHHHHHhccHHhHHHHHHHHHHHHHHHH-HHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhc
Confidence 89999998876555666677777777777665 31 2233333333 3344444443222110 01111
Q ss_pred --------cccHHHHHHHHHHHcc---cchHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhh
Q 006201 453 --------QGNCQQIISVLLQSMK---DVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGES 521 (657)
Q Consensus 453 --------~~~~~~il~~l~~~l~---d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~ 521 (657)
-....+++|.+-+.+. .+..|-..+|..+..=+.... .....|+++++.+.+.+......
T Consensus 689 ~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~-----~sF~~p~l~~l~~Fi~r~~~~~~---- 759 (982)
T KOG2022|consen 689 EPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLL-----TSFPEPMLPSLCPFIVRFLTSCL---- 759 (982)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhcccccc-----ccchhhhHHHHHHHHHHhccchH----
Confidence 1234566666655544 246677777776665444332 22336777777777777444332
Q ss_pred hHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhH
Q 006201 522 RLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYV 601 (657)
Q Consensus 522 ~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 601 (657)
.+- ..+..--.++....+.+.|.+.+.|-..++.+-..++....++ +++ +-...+.+++.+.+..++-- ..
T Consensus 760 a~t-l~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n-~~D----i~~~~~~~v~~ilkk~P~~~---~~ 830 (982)
T KOG2022|consen 760 AVT-LSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSN-QPD----IYLQLIGFVRQILKKIPKFL---EP 830 (982)
T ss_pred HHH-HHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCC-Cch----HHHHHHHHHHHHHHhCcCcc---cc
Confidence 111 1111111222222234555566555555544444443322222 122 11135556666666554420 00
Q ss_pred -hhHHHHHHHHHHHHHHcccCCcchhhHHHHHHHHHHH
Q 006201 602 -FMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYA 638 (657)
Q Consensus 602 -~~~~~~~i~~~l~~~l~~~~~~v~~~~~~~l~~l~~~ 638 (657)
...|..-+++.....+..+.+.....+...+..++..
T Consensus 831 ~~~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~ 868 (982)
T KOG2022|consen 831 SMLAFTSLILICAFILLNSPEPTTIRAASQFLTALATY 868 (982)
T ss_pred chHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhh
Confidence 2234455565777777765444444455555555443
No 117
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.1 Score=54.37 Aligned_cols=62 Identities=16% Similarity=0.302 Sum_probs=34.3
Q ss_pred hccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHhHH
Q 006201 227 ATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVR-EDEEPVALQAIEFWSSVCDE 290 (657)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~v~~~a~~~~~~l~~~ 290 (657)
++.+.+..+|--+++.++.++...+ ....++.-.+.++..++ +.|-.+|..+++++...|+.
T Consensus 337 fls~rE~NiRYLaLEsm~~L~ss~~--s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~ 399 (938)
T KOG1077|consen 337 FLSHRETNIRYLALESMCKLASSEF--SIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV 399 (938)
T ss_pred HhhcccccchhhhHHHHHHHHhccc--hHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhch
Confidence 3333344444444444444443311 11222223444555666 67778999999999999974
No 118
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.62 E-value=0.0016 Score=57.12 Aligned_cols=140 Identities=16% Similarity=0.108 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc--chHHHHHHHHHH
Q 006201 404 VPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--VPNVAEKACGAL 481 (657)
Q Consensus 404 ~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~al 481 (657)
...++.....+.+.+ +++++.-|+.++..++..++..+ +....++....+..+++.|+. .+.+...|+.++
T Consensus 20 ~~~l~~l~~ri~~LL-~s~~~~~rw~G~~Ll~~~~~~~~------~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L 92 (165)
T PF08167_consen 20 KSALHKLVTRINSLL-QSKSAYSRWAGLCLLKVTVEQCS------WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITL 92 (165)
T ss_pred HHHHHHHHHHHHHHh-CCCChhhHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 345677788888899 99999999999999999998864 124446667888888888884 467889999999
Q ss_pred HHHHhhccCCC-CCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Q 006201 482 YFLAQGFEDAI-SPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMM 555 (657)
Q Consensus 482 ~~l~~~~~~~~-~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~ 555 (657)
..++....+.- ..++...|.++.+++.+++.+++. .....++++|..++...+..|.||..++-..+..
T Consensus 93 ~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~~-----~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ 162 (165)
T PF08167_consen 93 TRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQDS-----SCPETALDALATLLPHHPTTFRPFANKIESALLS 162 (165)
T ss_pred HHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhcc-----ccHHHHHHHHHHHHHHCCccccchHHHHHHHHHH
Confidence 99998765420 123456789999999999999852 3445799999999999999999998876655544
No 119
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.61 E-value=0.00021 Score=59.35 Aligned_cols=95 Identities=13% Similarity=0.194 Sum_probs=71.7
Q ss_pred chHhhhHHHHHHHHHhhcC---CCchh-chHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHH-HHHHHHHHHH
Q 006201 343 WNIAMAGGTCLGLVARTVG---DDIVP-LVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFMLTA 417 (657)
Q Consensus 343 ~~~r~~a~~~L~~l~~~~~---~~~~~-~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~-~~i~~~l~~~ 417 (657)
|..|..+..+|..++...+ ..+.. .+++.+.+.+.++++++|..++.+|+.++... +....... ..+++.+++.
T Consensus 21 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~l~~l~~~ 99 (120)
T cd00020 21 ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP-EDNKLIVLEAGGVPKLVNL 99 (120)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc-HHHHHHHHHCCChHHHHHH
Confidence 7899999999999987532 12222 55566666677788999999999999999864 22222223 2378999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHh
Q 006201 418 LMQDPNNHVKDTTAWTLGRMFE 439 (657)
Q Consensus 418 l~~d~~~~vr~~a~~~l~~l~~ 439 (657)
+ ++.+..+|..+++++.++++
T Consensus 100 l-~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 100 L-DSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred H-hcCCHHHHHHHHHHHHHhhC
Confidence 9 88999999999999998763
No 120
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.61 E-value=0.049 Score=64.84 Aligned_cols=195 Identities=12% Similarity=0.083 Sum_probs=123.3
Q ss_pred CChhHHHHHHHHHhhhcccchhhhHHHhhhhcccC-ChHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHhhhcC--C
Q 006201 51 KPVESRKLAGLILKNALDAKEQHRKFELVQRWLSL-DSSVKAQIKSFILKTLSS-PAHDARSTASQVVAKVAGIELP--H 126 (657)
Q Consensus 51 ~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l-~~~~~~~i~~~ll~~l~~-~~~~vr~~aa~~l~~i~~~~~~--~ 126 (657)
.+..++.+|.-.||..-.+--. ...+ ....+..+.+.+...+.+ .+..+|..+..|+..+...... .
T Consensus 1149 ~n~~va~fAidsLrQLs~kfle---------~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIk 1219 (1780)
T PLN03076 1149 ENLSIAIFAMDSLRQLSMKFLE---------REELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVK 1219 (1780)
T ss_pred cchhHHHHHHHHHHHHHHHhcc---------hhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhh
Confidence 3567888888877774332110 0001 111222233344444543 4579999999999987776533 2
Q ss_pred CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccc---hhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHH
Q 006201 127 KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVE---QDHVNKILTAVVQGMNASESNNDVRLAATRALYNA 203 (657)
Q Consensus 127 ~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~---~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~ 203 (657)
..|+.++..+.....+..+.+...|..++..|+.+. -..+. ......++..+....+. ..+.++-..|+..|..+
T Consensus 1220 SGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~-f~~l~~~~~~~F~DlV~cL~~Fa~q-~~~~nISL~AI~lL~~~ 1297 (1780)
T PLN03076 1220 SGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREY-FPYITETETTTFTDCVNCLIAFTNS-RFNKDISLNAIAFLRFC 1297 (1780)
T ss_pred cCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhh-hhhccccchhHHHHHHHHHHHHHhC-cCcccccHHHHHHHHHH
Confidence 589999999998888888888999999999888764 22121 24566677776665553 44566777788888876
Q ss_pred Hhhchhh-c------------------------------CCh---hhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHH
Q 006201 204 LGFAQAN-F------------------------------SND---MERDYIMRVVCEATLSPEVKIRQAAFECLVAISST 249 (657)
Q Consensus 204 ~~~~~~~-~------------------------------~~~---~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 249 (657)
..++-+. . ..+ ..|-.++..+.....++..+||..+++.|-++...
T Consensus 1298 ~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~ 1377 (1780)
T PLN03076 1298 ATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRN 1377 (1780)
T ss_pred HHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 5443110 0 000 11222333444445678999999999999999998
Q ss_pred HHHhhHH
Q 006201 250 YYEKLAP 256 (657)
Q Consensus 250 ~~~~~~~ 256 (657)
++..|.+
T Consensus 1378 yG~~Fs~ 1384 (1780)
T PLN03076 1378 HGHLFSL 1384 (1780)
T ss_pred hhccCCH
Confidence 8877664
No 121
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.61 E-value=0.00013 Score=43.36 Aligned_cols=30 Identities=33% Similarity=0.505 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Q 006201 410 ALNFMLTALMQDPNNHVKDTTAWTLGRMFEF 440 (657)
Q Consensus 410 i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~ 440 (657)
++|.+++.+ +|+++.||.+|+++++.+++.
T Consensus 1 llp~l~~~l-~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLL-NDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHH-T-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHc-CCCCHHHHHHHHHHHHHHHhh
Confidence 578899999 999999999999999999875
No 122
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.58 E-value=0.00072 Score=52.45 Aligned_cols=76 Identities=24% Similarity=0.312 Sum_probs=57.2
Q ss_pred cchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCC
Q 006201 342 AWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQD 421 (657)
Q Consensus 342 ~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d 421 (657)
++.+|..+..+|+.+. -+..++.+.+.++|++|.+|.+|+.+|+.+.. +..++.+.+.+.+|
T Consensus 13 ~~~vr~~a~~~L~~~~-------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-----------~~~~~~L~~~l~~~ 74 (88)
T PF13646_consen 13 DPQVRAEAARALGELG-------DPEAIPALIELLKDEDPMVRRAAARALGRIGD-----------PEAIPALIKLLQDD 74 (88)
T ss_dssp SHHHHHHHHHHHHCCT-------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-----------HHTHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHcC-------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------HHHHHHHHHHHcCC
Confidence 3788988888877332 34566777777789999999999999998852 44567778877345
Q ss_pred CcHHHHHHHHHHHH
Q 006201 422 PNNHVKDTTAWTLG 435 (657)
Q Consensus 422 ~~~~vr~~a~~~l~ 435 (657)
++..||.+|+.+||
T Consensus 75 ~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 75 DDEVVREAAAEALG 88 (88)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhhcC
Confidence 67788999999886
No 123
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.56 E-value=0.031 Score=56.67 Aligned_cols=57 Identities=18% Similarity=0.200 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHcccchHHHHHHHHHHHHHHh
Q 006201 409 IALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQ 486 (657)
Q Consensus 409 ~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~l~~ 486 (657)
..++.+...+ +|+. +|..+++++|++.. ...++.|+..+.|.+ ++..|..++..+..
T Consensus 240 ~a~~~L~~ll-~d~~--vr~~a~~AlG~lg~-----------------p~av~~L~~~l~d~~-~aR~A~eA~~~ItG 296 (410)
T TIGR02270 240 DAQAWLRELL-QAAA--TRREALRAVGLVGD-----------------VEAAPWCLEAMREPP-WARLAGEAFSLITG 296 (410)
T ss_pred hHHHHHHHHh-cChh--hHHHHHHHHHHcCC-----------------cchHHHHHHHhcCcH-HHHHHHHHHHHhhC
Confidence 4456666667 6544 88888888876554 224566777776533 77777777776653
No 124
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.55 E-value=0.037 Score=59.75 Aligned_cols=345 Identities=17% Similarity=0.159 Sum_probs=176.8
Q ss_pred ccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 006201 36 PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQV 115 (657)
Q Consensus 36 ~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~ 115 (657)
.+.+..|+..|.. .+.++..++..+|++.--.. ..+..+. ...+.+.|.+.+.+++..++..+..+
T Consensus 289 ~~iV~~Lv~~Ldr--~n~ellil~v~fLkkLSi~~---------ENK~~m~---~~giV~kL~kLl~s~~~~l~~~aLrl 354 (708)
T PF05804_consen 289 KGIVSLLVKCLDR--ENEELLILAVTFLKKLSIFK---------ENKDEMA---ESGIVEKLLKLLPSENEDLVNVALRL 354 (708)
T ss_pred cCCHHHHHHHHcC--CCHHHHHHHHHHHHHHcCCH---------HHHHHHH---HcCCHHHHHHHhcCCCHHHHHHHHHH
Confidence 3555566666653 35677777777777733211 1111111 12345678888888888888888877
Q ss_pred HHHHHhhhcCCC--CCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccc-cccchhhHhHHHHHHHhccCCCCCCHHH
Q 006201 116 VAKVAGIELPHK--QWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSS-DAVEQDHVNKILTAVVQGMNASESNNDV 192 (657)
Q Consensus 116 l~~i~~~~~~~~--~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~-~~l~~~~~~~l~~~l~~~l~~~~~~~~v 192 (657)
|..++-..--.. .-.+++|.+...+.++ ..+..++.+|+.++..-.. ..+ .+ .+.+|.+++.+.. .++..+
T Consensus 355 L~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f--~~-TdcIp~L~~~Ll~-~~~~~v 428 (708)
T PF05804_consen 355 LFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMF--AY-TDCIPQLMQMLLE-NSEEEV 428 (708)
T ss_pred HHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHH--hh-cchHHHHHHHHHh-CCCccc
Confidence 777664321100 1245677777777754 4566788888888764211 112 12 2356666665543 344555
Q ss_pred HHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHh-hccCCcHHHHHHHHHHHHHHHHHHHH---hhHHhHHHHHHHHHHH
Q 006201 193 RLAATRALYNALGFAQANFSNDMERDYIMRVVCE-ATLSPEVKIRQAAFECLVAISSTYYE---KLAPYIQDIFNITAKA 268 (657)
Q Consensus 193 r~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~-~~~~~~~~~~~~~~~~l~~l~~~~~~---~~~~~~~~l~~~~~~~ 268 (657)
...++..+.++...-. +.. ..-....++.+.. .++..++ ..++.+..++.+.+. .|.+|+..++. .
T Consensus 429 ~~eliaL~iNLa~~~r-naq-lm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~~~k~~f~~~i~~L~~----~ 498 (708)
T PF05804_consen 429 QLELIALLINLALNKR-NAQ-LMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHDGPLKELFVDFIGDLAK----I 498 (708)
T ss_pred cHHHHHHHHHHhcCHH-HHH-HHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcCchHHHHHHHHHHHHHH----H
Confidence 5555555555443211 000 0000112333332 2333332 345666666665532 23344444444 3
Q ss_pred Hhc-CChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhh
Q 006201 269 VRE-DEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAM 347 (657)
Q Consensus 269 ~~~-~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~ 347 (657)
+.+ .+++.. ++.+++++.-... +.....+++. -.++|.+.+.+.....+ + ++.-
T Consensus 499 v~~~~~ee~~---vE~LGiLaNL~~~-------------~ld~~~ll~~--~~llp~L~~~L~~g~~~----d---Dl~L 553 (708)
T PF05804_consen 499 VSSGDSEEFV---VECLGILANLTIP-------------DLDWAQLLQE--YNLLPWLKDLLKPGASE----D---DLLL 553 (708)
T ss_pred hhcCCcHHHH---HHHHHHHHhcccC-------------CcCHHHHHHh--CCHHHHHHHHhCCCCCC----h---HHHH
Confidence 333 344444 4444555542100 0011122222 15778887777533211 1 1222
Q ss_pred hHHHHHHHHHhhc-------CCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHH--HHHHHHHHHHh
Q 006201 348 AGGTCLGLVARTV-------GDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV--NIALNFMLTAL 418 (657)
Q Consensus 348 ~a~~~L~~l~~~~-------~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~--~~i~~~l~~~l 418 (657)
.+.-.+++++..- ...+.+.+++.+...-.|. ..---.++++..+...- ......+ .++...++..+
T Consensus 554 E~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDd--E~VlQil~~f~~ll~h~--~tr~~ll~~~~~~~ylidL~ 629 (708)
T PF05804_consen 554 EVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDD--EIVLQILYVFYQLLFHE--ETREVLLKETEIPAYLIDLM 629 (708)
T ss_pred HHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchH--HHHHHHHHHHHHHHcCh--HHHHHHHhccchHHHHHHHh
Confidence 3334444444311 2345666666665543332 33344567777776542 2222222 34678888999
Q ss_pred cCCCcHHHHHHHHHHHHHHHhh
Q 006201 419 MQDPNNHVKDTTAWTLGRMFEF 440 (657)
Q Consensus 419 ~~d~~~~vr~~a~~~l~~l~~~ 440 (657)
+|.|+.||..|-.++.-++++
T Consensus 630 -~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 630 -HDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred -cCCCHHHHHHHHHHHHHHHHh
Confidence 999999999998888777775
No 125
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.55 E-value=0.0018 Score=68.83 Aligned_cols=150 Identities=15% Similarity=0.173 Sum_probs=113.5
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC----CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcccccc
Q 006201 92 QIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH----KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAV 167 (657)
Q Consensus 92 ~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~----~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l 167 (657)
.|.+.+.+.+...+..+|...-.+|+.+.... |. ...|.++|-|++.++-+|..+|...+.++..+.... +..+
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~v-P~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~-~tL~ 944 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNV-PKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTES-ETLQ 944 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcC-CHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhc-cccc
Confidence 34455666666555566666666666666543 42 478999999999999999999999999999988877 6666
Q ss_pred chhhHhHHHHHHHhccCCCCCC-HHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHH
Q 006201 168 EQDHVNKILTAVVQGMNASESN-NDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVA 245 (657)
Q Consensus 168 ~~~~~~~l~~~l~~~l~~~~~~-~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~ 245 (657)
..++..++|.++..-.+.+.+ ..||..|++|+..+..+.+..... .+++.+++.+...+.++..-+|+.+..+=..
T Consensus 945 -t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~-~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 945 -TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLL-SFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred -hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccc-cccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 789999999998776642332 679999999999998877654332 2467899999999988878888888776443
No 126
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.54 E-value=0.013 Score=60.78 Aligned_cols=111 Identities=14% Similarity=0.210 Sum_probs=82.0
Q ss_pred CChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh--hhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhc
Q 006201 85 LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAG--IELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEV 162 (657)
Q Consensus 85 l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~--~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~ 162 (657)
...+...++...++.+..+.+..||...+++|+.+.. ...+...++.+...+...+.+..+.+|..|+.+|+.+=..-
T Consensus 78 ~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~ 157 (892)
T KOG2025|consen 78 KEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDP 157 (892)
T ss_pred chhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCC
Confidence 4456777788888888889999999999999999987 33344456677777777788889999999999999875322
Q ss_pred cccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHH
Q 006201 163 SSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYN 202 (657)
Q Consensus 163 ~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~ 202 (657)
..+.. .+...+...+.+ |++++||.+|+.++..
T Consensus 158 ~dee~------~v~n~l~~liqn-DpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 158 KDEEC------PVVNLLKDLIQN-DPSDEVRRAALSNISV 190 (892)
T ss_pred CCCcc------cHHHHHHHHHhc-CCcHHHHHHHHHhhcc
Confidence 11111 223344445555 9999999999988764
No 127
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.52 E-value=0.072 Score=63.50 Aligned_cols=324 Identities=15% Similarity=0.151 Sum_probs=186.6
Q ss_pred CCchHHHHH----HHhhcCCChhHHHHHHHHHHHHhhhcc-ccccch-hhHhHHHHHHHhccCCCCCCHHHHHHHHHHHH
Q 006201 128 QWPELIGAL----LSNIHQLPPHTKQATLETLGYICEEVS-SDAVEQ-DHVNKILTAVVQGMNASESNNDVRLAATRALY 201 (657)
Q Consensus 128 ~~~~l~~~l----~~~l~~~~~~~~~~~l~~l~~i~~~~~-~~~l~~-~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~ 201 (657)
.|+.+...+ .......+..++..|+..|..++-.+- .+.+.. .....++..|...+.. ..+.++|..+++|+.
T Consensus 1130 ~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~-s~~~eVrE~ILeCv~ 1208 (1780)
T PLN03076 1130 VWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRK-SNAVEIRELIIRCVS 1208 (1780)
T ss_pred ehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHh-cCchHHHHHHHHHHH
Confidence 566644444 443344567788888888888876651 111111 2234566666665554 567899999999999
Q ss_pred HHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhH----HhHHHHHHHHHHHHhc-CChHH
Q 006201 202 NALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLA----PYIQDIFNITAKAVRE-DEEPV 276 (657)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~----~~~~~l~~~~~~~~~~-~~~~v 276 (657)
+++.--.+++.. =|..++.++.....+.++.+-..+++.+..+++.+-..+. ..+..++..+..-... .+.++
T Consensus 1209 qmI~s~~~nIkS--GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nI 1286 (1780)
T PLN03076 1209 QMVLSRVNNVKS--GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDI 1286 (1780)
T ss_pred HHHHHHHhhhhc--CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccc
Confidence 987643333332 2578888887777778888889999999988876543222 2334455444333332 34678
Q ss_pred HHHHHHHHHHHhHHHHHhhhhc---CCC-----------CCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCc
Q 006201 277 ALQAIEFWSSVCDEEIDILEEY---GGD-----------FSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGA 342 (657)
Q Consensus 277 ~~~a~~~~~~l~~~~~~~~~~~---~~~-----------~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~ 342 (657)
...|++++..++..-.+..... ... ..+........--.....--+|++.. +.+.--| +.
T Consensus 1287 SL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~-Ls~l~~D-----~R 1360 (1780)
T PLN03076 1287 SLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAG-LSELSFD-----PR 1360 (1780)
T ss_pred cHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHH-HHHHhcC-----Cc
Confidence 8888888766544321100000 000 00000000000000001111233222 2111111 11
Q ss_pred chHhhhHHHHHHHHHhhcCCCchh---------chHHHHHhhh---c--------------C------cchhhHHHHHHH
Q 006201 343 WNIAMAGGTCLGLVARTVGDDIVP---------LVMPFVEENI---T--------------K------QEWRQREAATYA 390 (657)
Q Consensus 343 ~~~r~~a~~~L~~l~~~~~~~~~~---------~l~~~l~~~l---~--------------~------~~~~~r~aal~~ 390 (657)
-.+|..|.++|-++....|..+-+ .++|++...- . + ..|. .+++..+
T Consensus 1361 lEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl-~eT~~~A 1439 (1780)
T PLN03076 1361 PEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWL-YETCTLA 1439 (1780)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHH-HHHHHHH
Confidence 378999999998888877765543 3445443210 0 0 1143 5677777
Q ss_pred HHHhhcCCC--CCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHcc
Q 006201 391 FGSILEGPS--PEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK 468 (657)
Q Consensus 391 l~~i~~~~~--~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~ 468 (657)
|..+++-.. -+.+...++.++..+..++ ..+|..+-..+..|+.++....+ +....+.+..++..+.+.+.
T Consensus 1440 L~~lvdLft~fFd~L~~~L~~~l~ll~~ci-~q~n~~la~ig~~~l~~li~~ng------~~F~~~~W~~i~~~~~~lf~ 1512 (1780)
T PLN03076 1440 LQLVVDLFVKFYPTVNPLLKKVLMLLVSFI-KRPHQSLAGIGIAAFVRLMSNAG------HLFSDEKWLEVVLSLKEAAN 1512 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHHHhh------ccCCHHHHHHHHHHHHHHHH
Confidence 777665321 1334456777777777788 88899999999999999998876 45777888888887777654
No 128
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.0077 Score=56.35 Aligned_cols=255 Identities=13% Similarity=0.189 Sum_probs=149.9
Q ss_pred hHHHHHHHHHhhc-CCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHH----HHHHHHHHHHhcCCC
Q 006201 348 AGGTCLGLVARTV-GDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV----NIALNFMLTALMQDP 422 (657)
Q Consensus 348 ~a~~~L~~l~~~~-~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~----~~i~~~l~~~l~~d~ 422 (657)
....||.++.... |..+.|.++|.++..+..++..++.-++..++.+.+.|+...+...+ ..+++.++.++ ...
T Consensus 62 lcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcI-gge 140 (524)
T KOG4413|consen 62 LCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCI-GGE 140 (524)
T ss_pred hHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHH-cCC
Confidence 3668888888765 78899999999999999888899999999999999998655554433 36889999999 888
Q ss_pred cHHHHHHHHHHHHHHHhhhccCcCCCccCCcccH-HHHHHHH-HHHc--ccchHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 006201 423 NNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNC-QQIISVL-LQSM--KDVPNVAEKACGALYFLAQGFEDAISPSSPL 498 (657)
Q Consensus 423 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~-~~il~~l-~~~l--~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l 498 (657)
+-.|..+|...+.+++.+-.. ....+ ..++..+ ...| +.+.-+|.+....+..+... ....
T Consensus 141 ddeVAkAAiesikrialfpaa--------leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSi-------Spes 205 (524)
T KOG4413|consen 141 DDEVAKAAIESIKRIALFPAA--------LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSI-------SPES 205 (524)
T ss_pred cHHHHHHHHHHHHHHHhcHHH--------HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhc-------CHHH
Confidence 999999999999988875320 00000 0000000 0111 11334455555544444432 1112
Q ss_pred chhH--HHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHH
Q 006201 499 TPFF--QEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNE 576 (657)
Q Consensus 499 ~~~~--~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~ 576 (657)
..+. ..++..|..-+...+ +.-++...++....++..-... .|+.+ ..+++.+.+.+.- .+.++ .+.
T Consensus 206 aneckkSGLldlLeaElkGte--DtLVianciElvteLaeteHgr--eflaQ--eglIdlicnIIsG---adsdP--fek 274 (524)
T KOG4413|consen 206 ANECKKSGLLDLLEAELKGTE--DTLVIANCIELVTELAETEHGR--EFLAQ--EGLIDLICNIISG---ADSDP--FEK 274 (524)
T ss_pred HhHhhhhhHHHHHHHHhcCCc--ceeehhhHHHHHHHHHHHhhhh--hhcch--hhHHHHHHHHhhC---CCCCc--HHH
Confidence 2232 355666666666544 3566677888888887765432 22221 1233333333321 12222 223
Q ss_pred HHHHHHHHHHHHHHHhCCCcchhhHhhHHH-HHH-------HHHHHHHHcccCCcchhhHHHHHHHHHHHh
Q 006201 577 IQGLLCGCLQVIIQKLGSSEQTKYVFMQYA-DQM-------MGLFLRVFAIRSATAHEEAMLAIGALAYAT 639 (657)
Q Consensus 577 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~i-------~~~l~~~l~~~~~~v~~~~~~~l~~l~~~~ 639 (657)
+| .+-...+-+|++. +.... +.+ ++-.+.++...+++..+.++.++|.|....
T Consensus 275 fr-----almgfgkffgkea-----imdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnt 335 (524)
T KOG4413|consen 275 FR-----ALMGFGKFFGKEA-----IMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNT 335 (524)
T ss_pred HH-----HHHHHHHHhcchH-----HhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCc
Confidence 33 3334445555553 22211 122 333345556678889999999999987643
No 129
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.51 E-value=0.066 Score=54.33 Aligned_cols=241 Identities=14% Similarity=0.074 Sum_probs=149.5
Q ss_pred HHHHHHHhcC-CCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhh
Q 006201 93 IKSFILKTLS-SPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDH 171 (657)
Q Consensus 93 i~~~ll~~l~-~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~ 171 (657)
....++..+. +++..++..++.++.. . .-+..+..++..+.+.++.+|..+...|+.+-.
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~---~-----~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~----------- 115 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLA---Q-----EDALDLRSVLAVLQAGPEGLCAGIQAALGWLGG----------- 115 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhc---c-----CChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc-----------
Confidence 4566777884 5567777655544421 1 123348899999999999999999999875321
Q ss_pred HhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHH
Q 006201 172 VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYY 251 (657)
Q Consensus 172 ~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 251 (657)
....+.+...+. +.++.+|..++.++...- . .-.+.+...+++.++.+|..++.+++.+-...
T Consensus 116 -~~a~~~L~~~L~--~~~p~vR~aal~al~~r~-------~------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~- 178 (410)
T TIGR02270 116 -RQAEPWLEPLLA--ASEPPGRAIGLAALGAHR-------H------DPGPALEAALTHEDALVRAAALRALGELPRRL- 178 (410)
T ss_pred -hHHHHHHHHHhc--CCChHHHHHHHHHHHhhc-------c------ChHHHHHHHhcCCCHHHHHHHHHHHHhhcccc-
Confidence 223455566666 788999999987776611 0 12234455667899999999999999875321
Q ss_pred HhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhh
Q 006201 252 EKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLK 331 (657)
Q Consensus 252 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~ 331 (657)
.++.+.....+.++.+|..|+..+..+.... -++.+......
T Consensus 179 ---------a~~~L~~al~d~~~~VR~aA~~al~~lG~~~-----------------------------A~~~l~~~~~~ 220 (410)
T TIGR02270 179 ---------SESTLRLYLRDSDPEVRFAALEAGLLAGSRL-----------------------------AWGVCRRFQVL 220 (410)
T ss_pred ---------chHHHHHHHcCCCHHHHHHHHHHHHHcCCHh-----------------------------HHHHHHHHHhc
Confidence 2222334578899999999998776554311 11122211110
Q ss_pred hcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 006201 332 QEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIAL 411 (657)
Q Consensus 332 ~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~ 411 (657)
.+ +..+..+...+... |. +..++.+...+.++. +|.+++.++|.+.+. . .+
T Consensus 221 --------~g-~~~~~~l~~~lal~----~~---~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p---~--------av 271 (410)
T TIGR02270 221 --------EG-GPHRQRLLVLLAVA----GG---PDAQAWLRELLQAAA--TRREALRAVGLVGDV---E--------AA 271 (410)
T ss_pred --------cC-ccHHHHHHHHHHhC----Cc---hhHHHHHHHHhcChh--hHHHHHHHHHHcCCc---c--------hH
Confidence 01 11222111222111 21 244555555665554 899999999988763 2 25
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 006201 412 NFMLTALMQDPNNHVKDTTAWTLGRMFE 439 (657)
Q Consensus 412 ~~l~~~l~~d~~~~vr~~a~~~l~~l~~ 439 (657)
+.++..+ .|+. +|..|-.++++++-
T Consensus 272 ~~L~~~l-~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 272 PWCLEAM-REPP--WARLAGEAFSLITG 296 (410)
T ss_pred HHHHHHh-cCcH--HHHHHHHHHHHhhC
Confidence 7778888 5543 99999999988876
No 130
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.49 E-value=0.26 Score=54.66 Aligned_cols=121 Identities=18% Similarity=0.253 Sum_probs=90.9
Q ss_pred HHHHHHHh---hcC-CCchhchHHHHHhhhcC----cchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCC
Q 006201 351 TCLGLVAR---TVG-DDIVPLVMPFVEENITK----QEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDP 422 (657)
Q Consensus 351 ~~L~~l~~---~~~-~~~~~~l~~~l~~~l~~----~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~ 422 (657)
+++.-+++ .+| +.++..+.|++.+...+ .++..+.||-.||+.+.-- +. .|-..-+|.+...+.+.|
T Consensus 899 d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-Sa----~fces~l~llftimeksp 973 (1251)
T KOG0414|consen 899 DLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-SA----EFCESHLPLLFTIMEKSP 973 (1251)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-hH----HHHHHHHHHHHHHHhcCC
Confidence 44444444 236 56778888888876644 3578999999999987632 21 233445677777774689
Q ss_pred cHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhh
Q 006201 423 NNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQG 487 (657)
Q Consensus 423 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~ 487 (657)
+|+||..+..++|-++-.++ ..+++.-+.+...|+| ++.||..|...+..++-+
T Consensus 974 ~p~IRsN~VvalgDlav~fp-----------nlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn 1028 (1251)
T KOG0414|consen 974 SPRIRSNLVVALGDLAVRFP-----------NLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILN 1028 (1251)
T ss_pred Cceeeecchheccchhhhcc-----------cccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh
Confidence 99999999999999998875 4567778899999998 799999999999988754
No 131
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.48 E-value=0.23 Score=53.63 Aligned_cols=166 Identities=12% Similarity=0.087 Sum_probs=113.6
Q ss_pred CCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHH
Q 006201 187 ESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITA 266 (657)
Q Consensus 187 ~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~ 266 (657)
+.+...|..|++-+..-+....+ ...+++-+...+...+.++++-+.--|..+++..|+.. -..++.+.
T Consensus 30 s~n~~~kidAmK~iIa~M~~G~d-------mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~----lLavNti~ 98 (757)
T COG5096 30 SSNDYKKIDAMKKIIAQMSLGED-------MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA----LLAVNTIQ 98 (757)
T ss_pred ccChHHHHHHHHHHHHHHhcCCC-------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH----HHHHHHHH
Confidence 56677788888776665443221 13455555666667889999888888888777766322 23566677
Q ss_pred HHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHh
Q 006201 267 KAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIA 346 (657)
Q Consensus 267 ~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r 346 (657)
+.++|.++.+|..|+++++.+-.. .++..+++.+.+++.+ ..-.+|
T Consensus 99 kDl~d~N~~iR~~AlR~ls~l~~~-------------------------el~~~~~~~ik~~l~d---------~~ayVR 144 (757)
T COG5096 99 KDLQDPNEEIRGFALRTLSLLRVK-------------------------ELLGNIIDPIKKLLTD---------PHAYVR 144 (757)
T ss_pred hhccCCCHHHHHHHHHHHHhcChH-------------------------HHHHHHHHHHHHHccC---------CcHHHH
Confidence 788999999999999998877542 2233445555554442 223799
Q ss_pred hhHHHHHHHHHhhcCCCchhc-hHHHHHhhhcCcchhhHHHHHHHHHHhhcC
Q 006201 347 MAGGTCLGLVARTVGDDIVPL-VMPFVEENITKQEWRQREAATYAFGSILEG 397 (657)
Q Consensus 347 ~~a~~~L~~l~~~~~~~~~~~-l~~~l~~~l~~~~~~~r~aal~~l~~i~~~ 397 (657)
+.|.-|+..+-..-++.+... ....+...+.|.++.+...|+.++..+-..
T Consensus 145 k~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 145 KTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 999999888876544444444 556666777889999999998888887754
No 132
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.12 Score=55.18 Aligned_cols=117 Identities=19% Similarity=0.211 Sum_probs=73.3
Q ss_pred HHHHHHhhcCC-ChhHHHHHHHHHHHHhhhc---cccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhch
Q 006201 133 IGALLSNIHQL-PPHTKQATLETLGYICEEV---SSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQ 208 (657)
Q Consensus 133 ~~~l~~~l~~~-~~~~~~~~l~~l~~i~~~~---~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 208 (657)
+..|++.+++. ++..+ +..+.++|+.+ +.+.++---++.++|.+++.++. ..+.++...|++|+..+++..+
T Consensus 169 ~kkLL~gL~~~~Des~Q---leal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~-E~n~DIMl~AcRaltyl~evlP 244 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQ---LEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSH-EHNFDIMLLACRALTYLCEVLP 244 (1051)
T ss_pred HHHHHHhccccCChHHH---HHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHhhcc
Confidence 34555555554 55443 44455555543 12223222367889999999986 6789999999999999998776
Q ss_pred hhcCChhhHHHHHHHHHh-hccCCcHHHHHHHHHHHHHHHHHHHHhh
Q 006201 209 ANFSNDMERDYIMRVVCE-ATLSPEVKIRQAAFECLVAISSTYYEKL 254 (657)
Q Consensus 209 ~~~~~~~~~~~il~~l~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 254 (657)
.....- .....++.+.+ ++.-.--++.+.++++|-.|.+.++.-+
T Consensus 245 ~S~a~v-V~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~Ai 290 (1051)
T KOG0168|consen 245 RSSAIV-VDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAI 290 (1051)
T ss_pred chhhee-ecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHH
Confidence 432210 01124444433 2333566888999999999988877543
No 133
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.45 E-value=0.044 Score=54.99 Aligned_cols=109 Identities=21% Similarity=0.211 Sum_probs=70.1
Q ss_pred hHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCc
Q 006201 344 NIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPN 423 (657)
Q Consensus 344 ~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~ 423 (657)
.+|..|..+|..+.... ..+.+.+...+.+++|.+|..++.+++.+..... .+.+...+ .+.+
T Consensus 195 ~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~~~-----------~~~l~~~l-~~~~ 257 (335)
T COG1413 195 DVRRAAASALGQLGSEN-----VEAADLLVKALSDESLEVRKAALLALGEIGDEEA-----------VDALAKAL-EDED 257 (335)
T ss_pred HHHHHHHHHHHHhhcch-----hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcchh-----------HHHHHHHH-hccc
Confidence 68888888887776543 4555666777888999999999999988775421 34556667 7777
Q ss_pred HHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHh
Q 006201 424 NHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQ 486 (657)
Q Consensus 424 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~ 486 (657)
+.++..+....+ ..- .......+...+.+ ...++..+..++.....
T Consensus 258 ~~~~~~~~~~~~---~~~--------------~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 304 (335)
T COG1413 258 VILALLAAAALG---ALD--------------LAEAALPLLLLLIDEANAVRLEAALALGQIGQ 304 (335)
T ss_pred hHHHHHHHHHhc---ccC--------------chhhHHHHHHHhhcchhhHHHHHHHHHHhhcc
Confidence 777777665554 110 11112233333443 56777777777776544
No 134
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.23 Score=52.23 Aligned_cols=389 Identities=12% Similarity=0.085 Sum_probs=206.6
Q ss_pred hcccCChHHHHHHHHHHHHhcCC-----------CChHHHH-------------HHHHHHHHHHhhhcCCCCCchHHHHH
Q 006201 81 RWLSLDSSVKAQIKSFILKTLSS-----------PAHDARS-------------TASQVVAKVAGIELPHKQWPELIGAL 136 (657)
Q Consensus 81 ~~~~l~~~~~~~i~~~ll~~l~~-----------~~~~vr~-------------~aa~~l~~i~~~~~~~~~~~~l~~~l 136 (657)
.|.-+.|...-.+..-++.++.- +++.+|+ +++.++..++.+. ++.....+++++
T Consensus 335 tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~g~spdlaal~fl~~~~sKr-ke~TfqgiLsf~ 413 (970)
T COG5656 335 TWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNGLSPDLAALFFLIISKSKR-KEETFQGILSFL 413 (970)
T ss_pred hHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcCCCChhHHHHHHHHHHhccc-chhhhhhHHHHH
Confidence 56555555555555556665541 2234443 2334444444443 334578888888
Q ss_pred HHhhcC--------CChhHHHHHHHHHHHHhhhcc-ccccchhhH-hHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhh
Q 006201 137 LSNIHQ--------LPPHTKQATLETLGYICEEVS-SDAVEQDHV-NKILTAVVQGMNASESNNDVRLAATRALYNALGF 206 (657)
Q Consensus 137 ~~~l~~--------~~~~~~~~~l~~l~~i~~~~~-~~~l~~~~~-~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~ 206 (657)
...++. +++...++|++.+..+....+ +..+ ...+ .-+++.+...++ ++.--+|..|++.+..+
T Consensus 414 ~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~-an~me~fiv~hv~P~f~--s~ygfL~Srace~is~~--- 487 (970)
T COG5656 414 LSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPA-ANVMEYFIVNHVIPAFR--SNYGFLKSRACEFISTI--- 487 (970)
T ss_pred HHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchH-HHHHHHHHHHHhhHhhc--CcccchHHHHHHHHHHH---
Confidence 888731 134567899999998877331 1112 1112 234555555566 56667788899988875
Q ss_pred chhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHH--HHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHH-
Q 006201 207 AQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTY--YEKLAPYIQDIFNITAKAVREDEEPVALQAIEF- 283 (657)
Q Consensus 207 ~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~- 283 (657)
+..+.+........+.....+++++-.++..+..++.-++.+. .+.+..|++..++-++..-+.-+-++-..+++.
T Consensus 488 -eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe~f 566 (970)
T COG5656 488 -EEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMESF 566 (970)
T ss_pred -HHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHHHH
Confidence 3344433333456666677777788888888777777766543 345677888888877766554443444444432
Q ss_pred HHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhc---
Q 006201 284 WSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV--- 360 (657)
Q Consensus 284 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~--- 360 (657)
...+++.- .++ .+.......++.+......+...+|-.+.-| +-..+|.-.|.++.+..
T Consensus 567 Ve~fseEL----spf-----------a~eLa~~Lv~qFlkiaq~l~ens~d~~s~vD---DKqmaasGiL~T~~smiLSl 628 (970)
T COG5656 567 VEYFSEEL----SPF-----------APELAGSLVRQFLKIAQSLLENSSDTSSVVD---DKQMAASGILRTIESMILSL 628 (970)
T ss_pred HHHhHHhh----chh-----------HHHHHHHHHHHHHHHHHHHHcCCcccccccc---HHHHHHHHHHHHHHHHHHhc
Confidence 22233211 000 1122233333333333332222211111111 23445655666555432
Q ss_pred CC--Cch----hchHHHHHhhhcCcc-hhhHHHHHHHHHHhhcCCC--CCcchHHHHHHHHHHHHHhcCCCcH-HHHHHH
Q 006201 361 GD--DIV----PLVMPFVEENITKQE-WRQREAATYAFGSILEGPS--PEKLVPLVNIALNFMLTALMQDPNN-HVKDTT 430 (657)
Q Consensus 361 ~~--~~~----~~l~~~l~~~l~~~~-~~~r~aal~~l~~i~~~~~--~~~~~~~~~~i~~~l~~~l~~d~~~-~vr~~a 430 (657)
.. .++ ..+.|.+.-.+.+.- --++++ +- +.+++. .+.+.+....++..+.+.+ .++.. .--..+
T Consensus 629 en~p~vLk~le~slypvi~Filkn~i~dfy~Ea-~d----ildg~tf~skeI~pimwgi~Ell~~~l-~~~~t~~y~ee~ 702 (970)
T COG5656 629 ENRPLVLKYLEVSLYPVISFILKNEISDFYQEA-LD----ILDGYTFMSKEIEPIMWGIFELLLNLL-IDEITAVYSEEV 702 (970)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HH----HHhhhhHHHHHhhhhhhHHHHHHHhcc-cccchhhhHHHH
Confidence 21 111 122232222222221 233332 22 333321 2344566677777777777 66653 334566
Q ss_pred HHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc--c-hHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHH
Q 006201 431 AWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--V-PNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQ 507 (657)
Q Consensus 431 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~-~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~ 507 (657)
..++.++....+.+. .....|...+.......+.. + -.=+..+|..+..++-++.+ ..+..|++-++.
T Consensus 703 ~~al~nfityG~~ef----~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd-----~Ll~qy~plfi~ 773 (970)
T COG5656 703 ADALDNFITYGKTEF----MDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRD-----ELLSQYLPLFIS 773 (970)
T ss_pred HHHHHHHHHhCcccc----ccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccc-----hhHHhhhHHHHH
Confidence 778888888765332 24456667777777777764 2 23456788888888877653 355567775555
Q ss_pred HHH
Q 006201 508 ALL 510 (657)
Q Consensus 508 ~L~ 510 (657)
..-
T Consensus 774 vag 776 (970)
T COG5656 774 VAG 776 (970)
T ss_pred HHh
Confidence 554
No 135
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.42 E-value=0.0012 Score=70.11 Aligned_cols=180 Identities=17% Similarity=0.246 Sum_probs=130.1
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHhhhcC-----CCCC----------chHHHHHHHhhcCCChhHHHHHHHHHHHHhh
Q 006201 96 FILKTLSSPAHDARSTASQVVAKVAGIELP-----HKQW----------PELIGALLSNIHQLPPHTKQATLETLGYICE 160 (657)
Q Consensus 96 ~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~-----~~~~----------~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~ 160 (657)
.++.+|+++ .+-..++.+++.+.....+ ...| .+++|.+.+.+.+.....+..-+..|..+..
T Consensus 819 klld~Ls~~--~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~ 896 (1030)
T KOG1967|consen 819 KLLDLLSGP--STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLT 896 (1030)
T ss_pred HHHHhcCCc--cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHh
Confidence 345555543 4445566666655543211 1233 4778888888886677778888999999999
Q ss_pred hccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCc---HHHHH
Q 006201 161 EVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPE---VKIRQ 237 (657)
Q Consensus 161 ~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~---~~~~~ 237 (657)
..+.+.+ -+.+..++|.+++++. -++..+|..+++++..++.-..... ..+.+.+++.++.+-.+++ .-+|.
T Consensus 897 ~vP~~vl-lp~~~~LlPLLLq~Ls--~~D~~v~vstl~~i~~~l~~~~tL~--t~~~~Tlvp~lLsls~~~~n~~~~VR~ 971 (1030)
T KOG1967|consen 897 NVPKQVL-LPQFPMLLPLLLQALS--MPDVIVRVSTLRTIPMLLTESETLQ--TEHLSTLVPYLLSLSSDNDNNMMVVRE 971 (1030)
T ss_pred cCCHHhh-ccchhhHHHHHHHhcC--CCccchhhhHhhhhhHHHHhccccc--hHHHhHHHHHHHhcCCCCCcchhHHHH
Confidence 8844444 5888999999999998 7889999999999888764322211 1234678888877666544 78999
Q ss_pred HHHHHHHHHHHHHH-HhhHHhHHHHHHHHHHHHhcCChHHHHHHHH
Q 006201 238 AAFECLVAISSTYY-EKLAPYIQDIFNITAKAVREDEEPVALQAIE 282 (657)
Q Consensus 238 ~~~~~l~~l~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~ 282 (657)
.+++||..+.+..| ..+.+|-++++..+...+.|...-+|..|.+
T Consensus 972 ~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~ 1017 (1030)
T KOG1967|consen 972 DALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVD 1017 (1030)
T ss_pred HHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHH
Confidence 99999999998554 4566788888888888888877788988885
No 136
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.41 E-value=0.023 Score=55.51 Aligned_cols=210 Identities=14% Similarity=0.153 Sum_probs=140.6
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhcc
Q 006201 411 LNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFE 489 (657)
Q Consensus 411 ~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~ 489 (657)
+...+..+ .+.....|.+++..+-++.....- +.........++..+.+.++. ..+-+.-|+.++.-++=.++
T Consensus 45 L~~~Id~l-~eK~~~~Re~aL~~l~~~l~~~~~-----~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg 118 (309)
T PF05004_consen 45 LKEAIDLL-TEKSSSTREAALEALIRALSSRYL-----PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLG 118 (309)
T ss_pred HHHHHHHH-HhcCHHHHHHHHHHHHHHHHhccc-----HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcC
Confidence 34445566 778899999999888777654321 112334556777788888874 44556677788887776654
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhh-----
Q 006201 490 DAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQ----- 564 (657)
Q Consensus 490 ~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~----- 564 (657)
. +..-...++.+.+.|.+.+.+... ....|..++.||+.+....+.....+ ..+|..+-..|...+...
T Consensus 119 ~----g~~~~ei~~~~~~~L~~~l~d~s~-~~~~R~~~~~aLai~~fv~~~d~~~~-~~~~~~le~if~~~~~~~~~~~~ 192 (309)
T PF05004_consen 119 A----GEDSEEIFEELKPVLKRILTDSSA-SPKARAACLEALAICTFVGGSDEEET-EELMESLESIFLLSILKSDGNAP 192 (309)
T ss_pred C----CccHHHHHHHHHHHHHHHHhCCcc-chHHHHHHHHHHHHHHHhhcCChhHH-HHHHHHHHHHHHHHhcCcCCCcc
Confidence 2 345667888999999998887653 35677788889998888777654332 322333322232221100
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHcccCCcchhhHHHHHHHHHHHhc
Q 006201 565 KLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATG 640 (657)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~~~~l~~l~~~~g 640 (657)
.+...+ ...+...++.+.+-++..++... +..+....++.+...|...+.+||-.|-++++-+.....
T Consensus 193 ~~~~~~---~~~l~~aAL~aW~lLlt~~~~~~-----~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 193 VVAAED---DAALVAAALSAWALLLTTLPDSK-----LEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred cccCCC---ccHHHHHHHHHHHHHHhcCCHHH-----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 111111 12467789999999998888754 667788889999999999999999999999988876554
No 137
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.25 Score=52.29 Aligned_cols=243 Identities=11% Similarity=0.142 Sum_probs=129.9
Q ss_pred hhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHH
Q 006201 347 MAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHV 426 (657)
Q Consensus 347 ~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~v 426 (657)
..|+.++..+....+..+.| -+..++-.++++....|.+|.+.|..++... +..... .=..+-+.+ .|.|
T Consensus 263 ~EaArai~~l~~~~~r~l~p-avs~Lq~flssp~~~lRfaAvRtLnkvAm~~-P~~v~~----cN~elE~lI-td~N--- 332 (865)
T KOG1078|consen 263 YEAARAIVSLPNTNSRELAP-AVSVLQLFLSSPKVALRFAAVRTLNKVAMKH-PQAVTV----CNLDLESLI-TDSN--- 332 (865)
T ss_pred HHHHHHHhhccccCHhhcch-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhC-Cccccc----cchhHHhhh-cccc---
Confidence 34556666666655655555 5566777788899999999999999988753 232210 011233445 6666
Q ss_pred HHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHH---ccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhH
Q 006201 427 KDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQS---MKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFF 502 (657)
Q Consensus 427 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~---l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~ 502 (657)
|.-|..++..+.+... ..-...++..+... +.| ...|...|..++...... --
T Consensus 333 rsIat~AITtLLKTG~----------e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~-------------k~ 389 (865)
T KOG1078|consen 333 RSIATLAITTLLKTGT----------ESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPR-------------KH 389 (865)
T ss_pred cchhHHHHHHHHHhcc----------hhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccH-------------HH
Confidence 5555666666666543 23334444444443 444 244444454444432221 11
Q ss_pred HHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH------------HHHHHHHHhhhcCCh-h
Q 006201 503 QEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLI------------MMELHQTLEAQKLSS-D 569 (657)
Q Consensus 503 ~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l------------~~~l~~~~~~~~~~~-~ 569 (657)
..++..|.+++.+.. .-.-+...++++..+++..++.-.+-+..++..+ ++.+..- -|.... .
T Consensus 390 ~~~m~FL~~~Lr~eG--g~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~E--gP~a~~Ps 465 (865)
T KOG1078|consen 390 TVMMNFLSNMLREEG--GFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKE--GPKAPNPS 465 (865)
T ss_pred HHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhcc--CCCCCCcc
Confidence 222333334443322 1233446667777777666554333333333332 1211110 000000 0
Q ss_pred -------HHH--HHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHcccCCcchhhHHHHHHHHH
Q 006201 570 -------ERE--KQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALA 636 (657)
Q Consensus 570 -------~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~~~~l~~l~ 636 (657)
.+. ....+|+.+..++..+. .+... ..+.+...+.+++.+++.++|+.|-..+..+-
T Consensus 466 kyir~iyNRviLEn~ivRaaAv~alaKfg--~~~~~--------l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 466 KYIRFIYNRVILENAIVRAAAVSALAKFG--AQDVV--------LLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhHHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCC--------ccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 000 11346777888887777 34442 34566777888999999999998888877776
No 138
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.36 E-value=0.25 Score=51.46 Aligned_cols=304 Identities=14% Similarity=0.147 Sum_probs=148.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCch
Q 006201 231 PEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPC 310 (657)
Q Consensus 231 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 310 (657)
.+.+.+.-+...+.++...+|+.- .+.++..+...+|+|..||.+|+.-+..+|...
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~----~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~------------------- 90 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQ----EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN------------------- 90 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGH----HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--------------------
T ss_pred CCHHHHHHHHHHHHHHHhhChhhH----HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH-------------------
Confidence 456777777777777666555443 345666666778899999999999999998753
Q ss_pred hhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHH
Q 006201 311 FYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYA 390 (657)
Q Consensus 311 ~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~ 390 (657)
..+++++..+|.+.|.. || ..-+.+...+|..+...-+...+..++..+... .+.+-.+|+-++..
T Consensus 91 ----~~~v~kvaDvL~QlL~t--dd-------~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-~~~de~~Re~~lkF 156 (556)
T PF05918_consen 91 ----PEHVSKVADVLVQLLQT--DD-------PVELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-KSGDEQVRERALKF 156 (556)
T ss_dssp -----T-HHHHHHHHHHHTT------------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----HS-HHHHHHHHHH
T ss_pred ----HHHHhHHHHHHHHHHhc--cc-------HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-ccCchHHHHHHHHH
Confidence 23345567777776652 11 122345556666666655544455444444321 13345678888877
Q ss_pred HHHhhcCCCCCcch--H-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHc
Q 006201 391 FGSILEGPSPEKLV--P-LVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSM 467 (657)
Q Consensus 391 l~~i~~~~~~~~~~--~-~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l 467 (657)
|..-......+.+. . .-..++..+.+.| +|-...==...+.+|+.+..+.. .......+.+++.+....
T Consensus 157 l~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL-~DVTaeEF~l~m~lL~~lk~~~~-------~~t~~g~qeLv~ii~eQa 228 (556)
T PF05918_consen 157 LREKLKPLKPELLTPQKEMEEFIVDEIKKVL-QDVTAEEFELFMSLLKSLKIYGG-------KQTIEGRQELVDIIEEQA 228 (556)
T ss_dssp HHHHGGGS-TTTS---HHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHTSGG----------GSSHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCcHHHhhchHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHhCccccc-------cCChHHHHHHHHHHHHHh
Confidence 76533333233333 2 2233556666777 66221111122233333222110 123455667777776543
Q ss_pred c-c------chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhccc
Q 006201 468 K-D------VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD 540 (657)
Q Consensus 468 ~-d------~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~ 540 (657)
. | ++....+-..++..-+..+.. ...-..|+.-++..++..+++-. ...+..++.+++.+...++.
T Consensus 229 ~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~----~v~Sskfv~y~~~kvlP~l~~l~---e~~kl~lLk~lAE~s~~~~~ 301 (556)
T PF05918_consen 229 DLDQPFDPSDPESIDRLISCLRQALPFFSR----GVSSSKFVNYMCEKVLPKLSDLP---EDRKLDLLKLLAELSPFCGA 301 (556)
T ss_dssp TTTS---SSSHHHHHHHHHHHHHHGGG-BT----TB--HHHHHHHHHHTCCCTT--------HHHHHHHHHHHHHTT---
T ss_pred ccCCCCCCcCHHHHHHHHHHHHHhhHHhcC----CCChHHHHHHHHHHhcCChhhCC---hHHHHHHHHHHHHHcCCCCc
Confidence 2 1 234444444444443333322 22334666666666666565543 34555788888888888874
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 006201 541 ETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSE 596 (657)
Q Consensus 541 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 596 (657)
.- ..+++|.+++.|...+-.. ... ..+.-..+||+-.....++...
T Consensus 302 ~d---~~~~L~~i~~~L~~ymP~~---~~~----~~l~fs~vEcLL~afh~La~k~ 347 (556)
T PF05918_consen 302 QD---ARQLLPSIFQLLKKYMPSK---KTE----PKLQFSYVECLLYAFHQLARKS 347 (556)
T ss_dssp -T---HHHHHHHHHHHHHTTS-----------------HHHHHHHHHHHHHHHTT-
T ss_pred cc---HHHHHHHHHHHHHHhCCCC---CCC----CcccchHhhHHHHHHHHHhhhC
Confidence 32 4566667777665543211 111 1233345666666555555554
No 139
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.36 E-value=0.00024 Score=42.15 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=26.5
Q ss_pred hHHHHHhhhcCcchhhHHHHHHHHHHhhcCC
Q 006201 368 VMPFVEENITKQEWRQREAATYAFGSILEGP 398 (657)
Q Consensus 368 l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~ 398 (657)
++|.+.+.++|++|++|.+|+.+++.+++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 4678888999999999999999999998753
No 140
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.30 E-value=0.065 Score=52.38 Aligned_cols=193 Identities=12% Similarity=0.139 Sum_probs=129.1
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHhhhcC----CCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccc-cccchhh
Q 006201 97 ILKTLSSPAHDARSTASQVVAKVAGIELP----HKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSS-DAVEQDH 171 (657)
Q Consensus 97 ll~~l~~~~~~vr~~aa~~l~~i~~~~~~----~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~-~~l~~~~ 171 (657)
.+..+.+.....|..+-..+..+....+. .....++++.+...++.+...-+..|++++..++-.+.+ ..- ...
T Consensus 48 ~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~-~ei 126 (309)
T PF05004_consen 48 AIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS-EEI 126 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH-HHH
Confidence 34455556678888777776666654332 135678899999999887776677788888877766521 222 456
Q ss_pred HhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHh--hcc----------CCcHHHHHHH
Q 006201 172 VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCE--ATL----------SPEVKIRQAA 239 (657)
Q Consensus 172 ~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~--~~~----------~~~~~~~~~~ 239 (657)
...+.|.|.+.+.++..+..+|.+++.||+-+.-+..............++.++. ..+ .+++.+..++
T Consensus 127 ~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aA 206 (309)
T PF05004_consen 127 FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAA 206 (309)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHH
Confidence 6788888888888544567788888888887654432211110000134443322 111 2346789999
Q ss_pred HHHHHHHHHHHHH-hhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHH
Q 006201 240 FECLVAISSTYYE-KLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDE 290 (657)
Q Consensus 240 ~~~l~~l~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~ 290 (657)
+..|+-++...+. .+..++...++.+...+.+.+.++|..|-+.+.-+.+.
T Consensus 207 L~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 207 LSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 9999999987665 35566677888888888999999999999887777664
No 141
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.028 Score=59.75 Aligned_cols=208 Identities=15% Similarity=0.194 Sum_probs=135.9
Q ss_pred CChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCc
Q 006201 51 KPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWP 130 (657)
Q Consensus 51 ~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~ 130 (657)
....+|-.|...+++.+++.. .-+-...+.+....+..+.++++.|--.+-..+..++.. +|+
T Consensus 739 ~qvpik~~gL~~l~~l~e~r~------------~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-y~e---- 801 (982)
T KOG4653|consen 739 DQVPIKGYGLQMLRHLIEKRK------------KATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-YPE---- 801 (982)
T ss_pred CcccchHHHHHHHHHHHHhcc------------hhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-cch----
Confidence 456788889999999887431 112234455677888899999988888888888888877 475
Q ss_pred hHHHHHHHhhcC----CChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhh
Q 006201 131 ELIGALLSNIHQ----LPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGF 206 (657)
Q Consensus 131 ~l~~~l~~~l~~----~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~ 206 (657)
+++|.+.+.-.+ ..++.|-..-.++..++... ++.. ..+...++..++.+.+ +++...|..++..++.++..
T Consensus 802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~-Gel~-~~y~~~Li~tfl~gvr--epd~~~RaSS~a~lg~Lcq~ 877 (982)
T KOG4653|consen 802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQAL-GELV-FKYKAVLINTFLSGVR--EPDHEFRASSLANLGQLCQL 877 (982)
T ss_pred hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHh-ccHH-HHHHHHHHHHHHHhcC--CchHHHHHhHHHHHHHHHHH
Confidence 555555553322 22333333336677776666 5555 6777889999999999 77888999999999998875
Q ss_pred chhhcCChhhHHHHHHHHHhh-ccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHH----HHHHHHHHHHhc-CChHHHHHH
Q 006201 207 AQANFSNDMERDYIMRVVCEA-TLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ----DIFNITAKAVRE-DEEPVALQA 280 (657)
Q Consensus 207 ~~~~~~~~~~~~~il~~l~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~----~l~~~~~~~~~~-~~~~v~~~a 280 (657)
... ....+..+++..+... ..++++-+|.+++..+..+....+..+.|.++ +....+...+.+ +++.++..+
T Consensus 878 ~a~--~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klha 955 (982)
T KOG4653|consen 878 LAF--QVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHA 955 (982)
T ss_pred Hhh--hhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Confidence 431 1111223444444333 35788999999999999988777766666443 333334444433 444455554
Q ss_pred H
Q 006201 281 I 281 (657)
Q Consensus 281 ~ 281 (657)
.
T Consensus 956 q 956 (982)
T KOG4653|consen 956 Q 956 (982)
T ss_pred H
Confidence 4
No 142
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.24 E-value=0.052 Score=58.95 Aligned_cols=149 Identities=19% Similarity=0.194 Sum_probs=93.1
Q ss_pred hhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHH
Q 006201 381 WRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQD-PNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQI 459 (657)
Q Consensus 381 ~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~i 459 (657)
.+.|--|.+.|+.|+.+....+....-.+++...+..+ +| ++|.+|.=.+-|||++=+.+.. ..-.-.-...
T Consensus 571 ~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~l-nd~~~pLLrQW~~icLG~LW~d~~~------Arw~G~r~~A 643 (1387)
T KOG1517|consen 571 PEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHL-NDDPEPLLRQWLCICLGRLWEDYDE------ARWSGRRDNA 643 (1387)
T ss_pred HHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHh-cCCccHHHHHHHHHHHHHHhhhcch------hhhccccccH
Confidence 46788888899999987522222222345677888888 77 5899999999999999887631 0111122344
Q ss_pred HHHHHHHccc-chHHHHHHHHHHHHHHhhccCC-CCCCCCC----c-----hhHHHHHH----HHHHhhccccchhhhHH
Q 006201 460 ISVLLQSMKD-VPNVAEKACGALYFLAQGFEDA-ISPSSPL----T-----PFFQEIVQ----ALLTVTHREDAGESRLR 524 (657)
Q Consensus 460 l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~-~~~~~~l----~-----~~~~~i~~----~L~~~l~~~~~~~~~~~ 524 (657)
-+.|+..|.| .++||.+|..||++|+.+..+. .+....+ . .-.+..+. .++..+++.. .-+|
T Consensus 644 hekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgs---plvr 720 (1387)
T KOG1517|consen 644 HEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGS---PLVR 720 (1387)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccc---hHHH
Confidence 5677777887 5999999999999999873221 0001111 1 11233333 4555555543 5667
Q ss_pred HHHHHHHHHHHHhcc
Q 006201 525 TAAYETLNEVVRCST 539 (657)
Q Consensus 525 ~~~~~al~~l~~~~~ 539 (657)
.++..+|+.++..-.
T Consensus 721 ~ev~v~ls~~~~g~~ 735 (1387)
T KOG1517|consen 721 TEVVVALSHFVVGYV 735 (1387)
T ss_pred HHHHHHHHHHHHhhH
Confidence 777777777765443
No 143
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.22 E-value=0.55 Score=52.32 Aligned_cols=150 Identities=13% Similarity=0.152 Sum_probs=95.7
Q ss_pred HHHHHHhcCCCh-----HHHHHHHHHHHHHHhcCcccHH-HHHHHHHh-cCCCChhHHHHHHHHHhhhcccchhhhHHHh
Q 006201 6 TQILLNAQSVDG-----TVRKQAEESLKQYQEQNLPGFL-LSLAGELV-NDEKPVESRKLAGLILKNALDAKEQHRKFEL 78 (657)
Q Consensus 6 ~~~l~~~~s~d~-----~~r~~A~~~L~~~~~~~~~~~~-~~L~~~l~-~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~ 78 (657)
..+++.+.++++ ..-+.--..|.++...- |..+ ..+..++. ..+.....|.....++.|.+-.--...
T Consensus 273 ~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~-P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~---- 347 (1251)
T KOG0414|consen 273 GNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERV-PKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDE---- 347 (1251)
T ss_pred HHHHHHhcccchhcccccchhhHHHHHHHHHHHh-HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcch----
Confidence 344555555432 33445555666665543 3332 22222222 124567788877777777654211000
Q ss_pred hhhcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhh-cCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHH
Q 006201 79 VQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIE-LPHKQWPELIGALLSNIHQLPPHTKQATLETLGY 157 (657)
Q Consensus 79 ~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~ 157 (657)
.-...+.+.+..+...+.+.+.+-+..+|..+-+++..|+..- .|.+.|.+++...+-.+.|.+..+|..|+..+..
T Consensus 348 --e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~ 425 (1251)
T KOG0414|consen 348 --ELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSS 425 (1251)
T ss_pred --hhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 0011223334445556666777889999999999999998864 3557999999999999999999999999999998
Q ss_pred Hhhhc
Q 006201 158 ICEEV 162 (657)
Q Consensus 158 i~~~~ 162 (657)
+...-
T Consensus 426 ~L~~~ 430 (1251)
T KOG0414|consen 426 LLDRH 430 (1251)
T ss_pred HHhcC
Confidence 87764
No 144
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.19 E-value=0.072 Score=55.48 Aligned_cols=195 Identities=15% Similarity=0.080 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCC
Q 006201 194 LAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDE 273 (657)
Q Consensus 194 ~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~ 273 (657)
...++.+..++.++++.-..+...+.++..+++.+..++-.||..++..+..+.......=......+...+...+.|..
T Consensus 60 dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dre 139 (892)
T KOG2025|consen 60 DRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDRE 139 (892)
T ss_pred HHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccC
Confidence 34566666666666544333334567788888888889999999999999998874332222334566666777788999
Q ss_pred hHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHH
Q 006201 274 EPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCL 353 (657)
Q Consensus 274 ~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L 353 (657)
+.||.+|+-.++.+-+. +++...+. +..+...+.+ | -+-.+|++|..++
T Consensus 140 p~VRiqAv~aLsrlQ~d------------~~dee~~v-----------~n~l~~liqn---D-----pS~EVRRaaLsnI 188 (892)
T KOG2025|consen 140 PNVRIQAVLALSRLQGD------------PKDEECPV-----------VNLLKDLIQN---D-----PSDEVRRAALSNI 188 (892)
T ss_pred chHHHHHHHHHHHHhcC------------CCCCcccH-----------HHHHHHHHhc---C-----CcHHHHHHHHHhh
Confidence 99999999777766532 11111111 1111111221 1 1236888776665
Q ss_pred HHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHH-HHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 006201 354 GLVARTVGDDIVPLVMPFVEENITKQEWRQREAATY-AFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAW 432 (657)
Q Consensus 354 ~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~-~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~ 432 (657)
.. ....+|.+ .+.-.|.+-..|..+.. ++-.+ +-+. .. +..-+..+...+ .|....||.++..
T Consensus 189 ~v-----dnsTlp~I----veRarDV~~anRrlvY~r~lpki-d~r~-ls----i~krv~LlewgL-nDRe~sVk~A~~d 252 (892)
T KOG2025|consen 189 SV-----DNSTLPCI----VERARDVSGANRRLVYERCLPKI-DLRS-LS----IDKRVLLLEWGL-NDREFSVKGALVD 252 (892)
T ss_pred cc-----CcccchhH----HHHhhhhhHHHHHHHHHHhhhhh-hhhh-hh----HHHHHHHHHHhh-hhhhhHHHHHHHH
Confidence 32 22344444 44445555445554432 23333 3221 12 233445666788 9999999999988
Q ss_pred HHH
Q 006201 433 TLG 435 (657)
Q Consensus 433 ~l~ 435 (657)
.+.
T Consensus 253 ~il 255 (892)
T KOG2025|consen 253 AIL 255 (892)
T ss_pred HHH
Confidence 773
No 145
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.16 E-value=0.0089 Score=52.40 Aligned_cols=137 Identities=13% Similarity=0.132 Sum_probs=103.1
Q ss_pred CCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhc
Q 006201 128 QWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFA 207 (657)
Q Consensus 128 ~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~ 207 (657)
.++.+...+.+.+++.++..|-.|+..+..+++..+++.+ ..+....+..+.+.++. ..+..++..++.++..++.++
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l-~~~~~~W~~~Ll~~L~~-~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEIL-LSHGSQWLRALLSILEK-PDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHh
Confidence 4567777888888999999999999999999998756666 56778888888888886 556788999999999998876
Q ss_pred hhhcC--Chh---hHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHH
Q 006201 208 QANFS--NDM---ERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKA 268 (657)
Q Consensus 208 ~~~~~--~~~---~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~ 268 (657)
.+... .+. ....+++.++...++ ......++++|..++..+|.-+.|+..++-..+...
T Consensus 100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 100 RGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSL 163 (165)
T ss_pred cCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHH
Confidence 53322 111 113466666666653 566778999999999999998988887766555443
No 146
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.15 E-value=0.089 Score=52.68 Aligned_cols=133 Identities=17% Similarity=0.197 Sum_probs=76.7
Q ss_pred chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhccc---------
Q 006201 470 VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD--------- 540 (657)
Q Consensus 470 ~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~--------- 540 (657)
...-|.+|+..+..+++..+. .+.+.+...++.+++-.......+.+.+..++..+++++.....
T Consensus 224 ~~TrR~AA~dfl~~L~~~~~~------~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~ 297 (370)
T PF08506_consen 224 SDTRRRAACDFLRSLCKKFEK------QVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTN 297 (370)
T ss_dssp --SHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-
T ss_pred cCCcHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccc
Confidence 345677889999999887532 23344444444444432222222466778888888888877632
Q ss_pred ---ccHHHHHH-HHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHH
Q 006201 541 ---ETAPMVMQ-LVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRV 616 (657)
Q Consensus 541 ---~~~~~~~~-l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 616 (657)
++..|+.+ +.|.+ .. +. +..+-+|+.+++++.++.+.+.++ .+..+++.++..
T Consensus 298 ~~v~v~~Ff~~~v~peL----~~--------~~--~~~piLka~aik~~~~Fr~~l~~~---------~l~~~~~~l~~~ 354 (370)
T PF08506_consen 298 ELVDVVDFFSQHVLPEL----QP--------DV--NSHPILKADAIKFLYTFRNQLPKE---------QLLQIFPLLVNH 354 (370)
T ss_dssp TTS-HHHHHHHHTCHHH----H---------SS---S-HHHHHHHHHHHHHHGGGS-HH---------HHHHHHHHHHHH
T ss_pred ccccHHHHHHHHhHHHh----cc--------cC--CCCcchHHHHHHHHHHHHhhCCHH---------HHHHHHHHHHHH
Confidence 12232222 22222 10 00 112357888999998888876655 778899999999
Q ss_pred HcccCCcchhhHHHH
Q 006201 617 FAIRSATAHEEAMLA 631 (657)
Q Consensus 617 l~~~~~~v~~~~~~~ 631 (657)
|..++.-|+-.|..+
T Consensus 355 L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 355 LQSSSYVVHTYAAIA 369 (370)
T ss_dssp TTSS-HHHHHHHHHH
T ss_pred hCCCCcchhhhhhhh
Confidence 998766666665544
No 147
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=97.14 E-value=0.44 Score=49.77 Aligned_cols=128 Identities=12% Similarity=0.116 Sum_probs=92.0
Q ss_pred HHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCC-----cchHHHHHHHHHHHHHhcCCCc
Q 006201 349 GGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPE-----KLVPLVNIALNFMLTALMQDPN 423 (657)
Q Consensus 349 a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~-----~~~~~~~~i~~~l~~~l~~d~~ 423 (657)
....+.+++...|.-++..+- .+.+.+.+.+.-.|.+.+-+.+.+......+ .....+..++..+...+ .|.+
T Consensus 282 islFl~kls~l~p~i~lrq~~-~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl-~D~~ 359 (1128)
T COG5098 282 ISLFLNKLSELSPGIMLRQYE-HFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERL-SDTY 359 (1128)
T ss_pred HHHHHHHHhhcCchHHHHHHH-HHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHh-hccc
Confidence 345666666666554444332 3335677778888998888888877543212 12334667788888899 9999
Q ss_pred HHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHh
Q 006201 424 NHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQ 486 (657)
Q Consensus 424 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~ 486 (657)
|.+|.-|+..+..++..-. ....--+.+.....+.++| ..-||.+|...+..++.
T Consensus 360 py~RtKalqv~~kifdl~s--------k~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 360 PYTRTKALQVLEKIFDLNS--------KTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred hHHHHHHHHHHHHHHhCcc--------cccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 9999999999988887532 3344567888999999998 68899999998887764
No 148
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=97.11 E-value=0.0086 Score=52.01 Aligned_cols=126 Identities=18% Similarity=0.315 Sum_probs=84.7
Q ss_pred Cchh--HHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccH-------------------H----------HH
Q 006201 498 LTPF--FQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETA-------------------P----------MV 546 (657)
Q Consensus 498 l~~~--~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~-------------------~----------~~ 546 (657)
+.|| +++++..|++++.... ...+|.+++.++|.+-.-.|-.+. + ..
T Consensus 2 v~PY~~yP~LL~~L~~iLk~e~--s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (160)
T PF11865_consen 2 VDPYLDYPELLDILLNILKTEQ--SQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSS 79 (160)
T ss_pred cchHHHhHHHHHHHHHHHHhCC--CHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCch
Confidence 3466 5799999999998875 488999999999988433221000 0 01
Q ss_pred HHHHH-HHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHcccCCcch
Q 006201 547 MQLVP-LIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAH 625 (657)
Q Consensus 547 ~~l~~-~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~ 625 (657)
....| ..++.+-..+.++.. ......++.++..+.+.+|.. +.||++++++.++..++......+
T Consensus 80 ee~y~~vvi~~L~~iL~D~sL--------s~~h~~vv~ai~~If~~l~~~------cv~~L~~viP~~l~~i~~~~~~~~ 145 (160)
T PF11865_consen 80 EEYYPTVVINALMRILRDPSL--------SSHHTAVVQAIMYIFKSLGLK------CVPYLPQVIPIFLRVIRTCPDSLR 145 (160)
T ss_pred HHHHHHHHHHHHHHHHHhhhh--------HHHHHHHHHHHHHHHHhcCcC------chhHHHHHhHHHHHHHHhCCHHHH
Confidence 11111 112222222222111 122335788888899999999 999999999999999998666889
Q ss_pred hhHHHHHHHHHHHh
Q 006201 626 EEAMLAIGALAYAT 639 (657)
Q Consensus 626 ~~~~~~l~~l~~~~ 639 (657)
|..+.-++.++...
T Consensus 146 e~~~~qL~~lv~iv 159 (160)
T PF11865_consen 146 EFYFQQLADLVSIV 159 (160)
T ss_pred HHHHHHHHHHHHHh
Confidence 99888888888754
No 149
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=97.10 E-value=0.028 Score=54.37 Aligned_cols=175 Identities=16% Similarity=0.208 Sum_probs=111.3
Q ss_pred chhhHHHHH-HHHHHhhc-CCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHH
Q 006201 380 EWRQREAAT-YAFGSILE-GPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQ 457 (657)
Q Consensus 380 ~~~~r~aal-~~l~~i~~-~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~ 457 (657)
.|+...+.. ..+.-+.. ......+..+.+-++|.++..+ .|..+.+|..++.++..+.+..+... .+.....-..+
T Consensus 88 ~WK~~~~~~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~ll-DD~~~~~K~~G~~lL~~ll~~~~~~~-~~~L~~tGl~~ 165 (282)
T PF10521_consen 88 PWKSNPGLASHVLSWIVLSQLDRPWISQHWPLIIPPILNLL-DDYSPEIKIQGCQLLHHLLEKVPAAE-WDILRRTGLFS 165 (282)
T ss_pred CcccCCcccHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHh-cCCCHHHHHHHHHHHHHHHHhCChhh-hHHHHHcChHH
Confidence 576655322 33333333 4445667788999999999999 99999999999999999999765210 00001112234
Q ss_pred HHHHHHHHHcc--------c-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHH-HHHHHhhcccc-chhhhHHHH
Q 006201 458 QIISVLLQSMK--------D-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIV-QALLTVTHRED-AGESRLRTA 526 (657)
Q Consensus 458 ~il~~l~~~l~--------d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~-~~L~~~l~~~~-~~~~~~~~~ 526 (657)
-+-+++...+. + ...+-..|..++..++...... ....-...+..++ +.++..+.... ....+++..
T Consensus 166 v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~--~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ 243 (282)
T PF10521_consen 166 VFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQEND--DSNPRSTWLDKILREGILSSMEHESSFSYPRLRTV 243 (282)
T ss_pred HHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccC--CcccchHHHHHHHHHHHhhhceeccccCchhHHHH
Confidence 44445555554 2 3567778888888887753211 1222223333333 43555554332 113678888
Q ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Q 006201 527 AYETLNEVVRCSTDETAPMVMQLVPLIMMELH 558 (657)
Q Consensus 527 ~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~ 558 (657)
.++.+..++...|.....|++.+++.+.+.+.
T Consensus 244 ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~ 275 (282)
T PF10521_consen 244 LLQQLPPIIDELGISSVKHLQRIIPVLSQILE 275 (282)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc
Confidence 99999999999999888999988887766443
No 150
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.09 E-value=0.0055 Score=53.89 Aligned_cols=142 Identities=16% Similarity=0.158 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHhhhcCC---CCCchHHHHH------------HHhhcCCChhHHHHHHHHHHHHhhhccccccc---
Q 006201 107 DARSTASQVVAKVAGIELPH---KQWPELIGAL------------LSNIHQLPPHTKQATLETLGYICEEVSSDAVE--- 168 (657)
Q Consensus 107 ~vr~~aa~~l~~i~~~~~~~---~~~~~l~~~l------------~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~--- 168 (657)
.+|..|..++..+++...+. +.|+.++|.- .-.+.|+++..|.+|+.++..+.+... ..+.
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk-~~L~~Ae 79 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSK-PFLAQAE 79 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccH-HHHHHHH
Confidence 37899999999999984342 5788888775 223457788999999999999988752 2221
Q ss_pred ----------------hhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCc
Q 006201 169 ----------------QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPE 232 (657)
Q Consensus 169 ----------------~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~ 232 (657)
...+.++...+...+.. +.+..+....+||+..++...+=.-...+....++..+...+.+.|
T Consensus 80 ~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~-E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 80 ESKGPSGSFTSLSSTLASMIMELHRGLLLALQA-EKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRD 158 (182)
T ss_pred hcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCC
Confidence 01234555566777775 5677788899999999887544111122334567777777777789
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006201 233 VKIRQAAFECLVAISSTY 250 (657)
Q Consensus 233 ~~~~~~~~~~l~~l~~~~ 250 (657)
.+++..++.+++.++...
T Consensus 159 ~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 159 PNVRVAALSCLGALLSVQ 176 (182)
T ss_pred CcHHHHHHHHHHHHHcCC
Confidence 999999999999887643
No 151
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.22 Score=53.23 Aligned_cols=213 Identities=17% Similarity=0.169 Sum_probs=128.7
Q ss_pred chhhHHHHHHHHHHhhcCCCCCcchH-HHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHH
Q 006201 380 EWRQREAATYAFGSILEGPSPEKLVP-LVNIALNFMLTALMQD-PNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQ 457 (657)
Q Consensus 380 ~~~~r~aal~~l~~i~~~~~~~~~~~-~~~~i~~~l~~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~ 457 (657)
+...+-.++.-|+.+..--..+.+.. .++.++|.++..+ ++ .++.+-..|++++..+++.++.. ...-.-+
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL-~~E~n~DIMl~AcRaltyl~evlP~S------~a~vV~~ 253 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALL-SHEHNFDIMLLACRALTYLCEVLPRS------SAIVVDE 253 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHhhccch------hheeecc
Confidence 44444455555554332111222222 2577889999999 65 46889999999999999999732 2222334
Q ss_pred HHHHHHHHHccc--chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHH
Q 006201 458 QIISVLLQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVV 535 (657)
Q Consensus 458 ~il~~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~ 535 (657)
..+|.|...|.. .-.|.+.+..||..+.+.- +++.+..= -+...+..+.... -..+..++......-
T Consensus 254 ~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H-----~~AiL~AG---~l~a~LsylDFFS---i~aQR~AlaiaaN~C 322 (1051)
T KOG0168|consen 254 HAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH-----PKAILQAG---ALSAVLSYLDFFS---IHAQRVALAIAANCC 322 (1051)
T ss_pred cchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc-----cHHHHhcc---cHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 578888888875 4689999999999888751 12222221 1222233333332 234456777777777
Q ss_pred HhcccccHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHH-HHHHHHHH
Q 006201 536 RCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYA-DQMMGLFL 614 (657)
Q Consensus 536 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~i~~~l~ 614 (657)
+....+-..|+...+|.+-..+... |+. ....++-|+..++...-.. ...+.+.+ ..+++.+.
T Consensus 323 ksi~sd~f~~v~ealPlL~~lLs~~---------D~k----~ies~~ic~~ri~d~f~h~---~~kLdql~s~dLi~~~~ 386 (1051)
T KOG0168|consen 323 KSIRSDEFHFVMEALPLLTPLLSYQ---------DKK----PIESVCICLTRIADGFQHG---PDKLDQLCSHDLITNIQ 386 (1051)
T ss_pred hcCCCccchHHHHHHHHHHHHHhhc---------cch----hHHHHHHHHHHHHHhcccC---hHHHHHHhchhHHHHHH
Confidence 7777665567777888877777642 221 2335777888888876554 12233333 35777777
Q ss_pred HHHcccCCcchh
Q 006201 615 RVFAIRSATAHE 626 (657)
Q Consensus 615 ~~l~~~~~~v~~ 626 (657)
+.++.....+..
T Consensus 387 qLlsvt~t~Ls~ 398 (1051)
T KOG0168|consen 387 QLLSVTPTILSN 398 (1051)
T ss_pred HHHhcCcccccc
Confidence 777765343333
No 152
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.98 E-value=0.019 Score=50.57 Aligned_cols=150 Identities=19% Similarity=0.216 Sum_probs=94.5
Q ss_pred hhHHHHHHHHHHhhcCCCCCcchHHHHHHHHH-----------HH-HHhcCCCcHHHHHHHHHHHHHHHhhhcc----Cc
Q 006201 382 RQREAATYAFGSILEGPSPEKLVPLVNIALNF-----------ML-TALMQDPNNHVKDTTAWTLGRMFEFLHG----ST 445 (657)
Q Consensus 382 ~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~-----------l~-~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~ 445 (657)
++|.+|+.+|+.+++.+.+..+..|-+.++|. ++ ..+ .|++++||.+|+.++..+-+.... ..
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il-~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae 79 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCIL-KDPSPKVRAAAASALAALLEGSKPFLAQAE 79 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHH-cCCchhHHHHHHHHHHHHHHccHHHHHHHH
Confidence 46777888888877765455555555444442 23 345 899999999999999888664210 00
Q ss_pred -CCCcc-CCc-------ccHHHHHHHHHHHccc--chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhc
Q 006201 446 -LETPI-INQ-------GNCQQIISVLLQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTH 514 (657)
Q Consensus 446 -~~~~~-~~~-------~~~~~il~~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~ 514 (657)
..++. ... ..+..+-..|+..|+. +..+....++++..++.+.. . ...=..++..++..+...+.
T Consensus 80 ~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tP-Y---~rL~~~ll~~~v~~v~~~l~ 155 (182)
T PF13251_consen 80 ESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATP-Y---HRLPPGLLTEVVTQVRPLLR 155 (182)
T ss_pred hcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCC-h---hhcCHhHHHHHHHHHHHHHh
Confidence 00000 001 1233444455555553 46677788899998887631 1 11123567788888877777
Q ss_pred cccchhhhHHHHHHHHHHHHHHhcc
Q 006201 515 REDAGESRLRTAAYETLNEVVRCST 539 (657)
Q Consensus 515 ~~~~~~~~~~~~~~~al~~l~~~~~ 539 (657)
..+ .+++..++.+++.++...+
T Consensus 156 ~~d---~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 156 HRD---PNVRVAALSCLGALLSVQP 177 (182)
T ss_pred cCC---CcHHHHHHHHHHHHHcCCC
Confidence 654 6788899999999988765
No 153
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=96.97 E-value=0.61 Score=48.57 Aligned_cols=143 Identities=14% Similarity=0.086 Sum_probs=90.3
Q ss_pred chhhHHHHHHHHHHhhcCCC--CCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHH
Q 006201 380 EWRQREAATYAFGSILEGPS--PEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQ 457 (657)
Q Consensus 380 ~~~~r~aal~~l~~i~~~~~--~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~ 457 (657)
+-..+.||+.++-+++...+ ...+. -..+...+++.+ .||...|..+++-++-++.-.+.+ ....=.-.
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg~~--~~dv~~plvqll-~dp~~~i~~~~lgai~NlVmefs~------~kskfl~~ 460 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTGLK--RNDVAQPLVQLL-MDPEIMIMGITLGAICNLVMEFSN------LKSKFLRN 460 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCc--cchhHHHHHHHh-hCcchhHHHHHHHHHHHHHhhccc------HHHHHHHc
Confidence 45667888888776554210 00011 134566778888 999999999999888888777652 12122224
Q ss_pred HHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHH
Q 006201 458 QIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVR 536 (657)
Q Consensus 458 ~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~ 536 (657)
..+..+.+.+.+ ++.+|..+.|+|..++=++.. .....++-+--.+.+....++++ ..+++.++..+-.+.-
T Consensus 461 ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de----~~k~~~~~ki~a~~i~~l~nd~d---~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 461 NGIDILESMLTDPDFNSRANSLWVLRHLMFNCDE----EEKFQLLAKIPANLILDLINDPD---WAVQEQCFQLLRNLTC 533 (678)
T ss_pred CcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchH----HHHHHHHHHhhHHHHHHHHhCCC---HHHHHHHHHHHHHhhc
Confidence 556677777776 688999999999988744321 11223344444455555666654 6788888887777765
Q ss_pred hc
Q 006201 537 CS 538 (657)
Q Consensus 537 ~~ 538 (657)
.+
T Consensus 534 ~~ 535 (678)
T KOG1293|consen 534 NS 535 (678)
T ss_pred Cc
Confidence 43
No 154
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.93 E-value=0.027 Score=56.89 Aligned_cols=155 Identities=13% Similarity=0.187 Sum_probs=95.1
Q ss_pred HHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHhHHHHHhhhhcC
Q 006201 221 MRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVRE-DEEPVALQAIEFWSSVCDEEIDILEEYG 299 (657)
Q Consensus 221 l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~v~~~a~~~~~~l~~~~~~~~~~~~ 299 (657)
++-+...+...++..|..++++|..= +-++.+++.+...+.+ ..-++....++.+.++..-...+.+.
T Consensus 209 y~~It~a~~g~~~~~r~eAL~sL~TD---------sGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~N-- 277 (576)
T KOG2549|consen 209 YKEITEACTGSDEPLRQEALQSLETD---------SGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDN-- 277 (576)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhhccC---------ccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcC--
Confidence 33344444457888899999888751 2233344433333221 12233333445555555443333211
Q ss_pred CCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhc--CccccCCCcchHhhhHHHHHHHHHhhcCCC---chhchHHHHHh
Q 006201 300 GDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQE--EDQDQDEGAWNIAMAGGTCLGLVARTVGDD---IVPLVMPFVEE 374 (657)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~--~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~---~~~~l~~~l~~ 374 (657)
..-++.+++..++|.++.++-... .++ +.|+.|.+|..|+.++..++..++.. +-+.+...+..
T Consensus 278 ----------p~i~lepYlh~L~PSvlTCvVsk~l~~~p-~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k 346 (576)
T KOG2549|consen 278 ----------PNIFLEPYLHQLVPSVLTCVVSKNLCLRP-ELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSK 346 (576)
T ss_pred ----------CccchhhHHHHHhhHHHHhhhhhhccCCc-cccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 113567888888888877653221 111 23456999999999999999998753 45667777777
Q ss_pred hhcCc--chhhHHHHHHHHHHhhcC
Q 006201 375 NITKQ--EWRQREAATYAFGSILEG 397 (657)
Q Consensus 375 ~l~~~--~~~~r~aal~~l~~i~~~ 397 (657)
.+.|+ .|...+.++..|..+...
T Consensus 347 ~l~D~~~~~st~YGai~gL~~lg~~ 371 (576)
T KOG2549|consen 347 ALLDNKKPLSTHYGAIAGLSELGHE 371 (576)
T ss_pred HhcCCCCCchhhhhHHHHHHHhhhh
Confidence 77665 488999999999888764
No 155
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.92 E-value=1.1 Score=50.51 Aligned_cols=151 Identities=21% Similarity=0.234 Sum_probs=106.3
Q ss_pred cHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHHHHH-----HhcCC---C--Ch
Q 006201 37 GFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFIL-----KTLSS---P--AH 106 (657)
Q Consensus 37 ~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll-----~~l~~---~--~~ 106 (657)
.+...|.+-+.+ +.-++|+-|++.++.....+. ..++-+..+.+.-.++ ..+.+ + ..
T Consensus 77 s~~e~L~~~~~~--~~we~rhg~~i~lrei~~~h~-----------~~~~~~~led~~~rll~v~~Ldrf~dfisd~vva 143 (1549)
T KOG0392|consen 77 SFLEELVNDLFE--PQWEIRHGAAIALREILKTHG-----------DSLSYELLEDLLIRLLCVLALDRFGDFISDNVVA 143 (1549)
T ss_pred HHHHHHHHHhcC--chhhhhcCcchhhhhHHHHhc-----------chhhHHHHHHHHHHHHHHHHHHHhcccccccchh
Confidence 456666666664 467999999999999887543 2233333332222222 22222 2 25
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCC
Q 006201 107 DARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNAS 186 (657)
Q Consensus 107 ~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~ 186 (657)
.||...|++++.+.++..+ ....+.++.+.+.+..++..+|.+++..+...+... -+.+ ......+++.+.+++.
T Consensus 144 pVre~caq~L~~~l~~~~~-s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air-~d~l-~~~~~~vl~~~i~~L~-- 218 (1549)
T KOG0392|consen 144 PVREACAQALGAYLKHMDE-SLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIR-QDLL-FQLLNLVLDFVIEGLE-- 218 (1549)
T ss_pred hhHHHHHHHHHHHHHhhhh-HhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHH-HHHH-HHHHHHHHHHHHhhhh--
Confidence 8999999999999999865 577788888888888889999999998888766532 3333 3445677888899999
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 006201 187 ESNNDVRLAATRALYNALG 205 (657)
Q Consensus 187 ~~~~~vr~~al~~l~~~~~ 205 (657)
|.+.+++..|.+.+.....
T Consensus 219 ds~ddv~~~aa~~l~~~~s 237 (1549)
T KOG0392|consen 219 DSDDDVRSVAAQFLVPAPS 237 (1549)
T ss_pred hcchHHHHHHHHHhhhhhH
Confidence 7888999888888777654
No 156
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.89 E-value=0.064 Score=54.52 Aligned_cols=179 Identities=15% Similarity=0.153 Sum_probs=105.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhc-Cc-ccHHHHHHHHHhc-CCCChhHHHHHHHHHhhhcccchhhhHHHhhh
Q 006201 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQ-NL-PGFLLSLAGELVN-DEKPVESRKLAGLILKNALDAKEQHRKFELVQ 80 (657)
Q Consensus 4 ~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~-~~-~~~~~~L~~~l~~-~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~ 80 (657)
...++++..+......|+.. ..|.++..+ .+ .+|...+-.+|.= .++...-|. ..++++++.+.-...
T Consensus 12 s~~~if~k~Q~s~aGhrk~~-a~l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~dRi--l~fl~~f~~Y~~~~d------ 82 (885)
T COG5218 12 SMQLIFNKIQQSSAGHRKSL-AELMEMLTAHEFSEEFLRVVNTILACKKNPSIPDRI--LSFLKRFFEYDMPDD------ 82 (885)
T ss_pred HHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHhhHHHHHHHHHHhhccccCCCcHHHH--HHHHHHHHHhcCCCC------
Confidence 35667777766666677764 344444433 12 2334333344431 122222232 223444444321100
Q ss_pred hcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcC--CCCCchHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 006201 81 RWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELP--HKQWPELIGALLSNIHQLPPHTKQATLETLGYI 158 (657)
Q Consensus 81 ~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~--~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i 158 (657)
.=..+..+.+...++.++.+++..||...+++++.+....-+ +..++.++..|.+.+-+-.+.+|..|+.||..+
T Consensus 83 ---peg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~ 159 (885)
T COG5218 83 ---PEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYY 159 (885)
T ss_pred ---hhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 001345666667788888899999999999999998876533 234566677777777777889999999999876
Q ss_pred hhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHH
Q 006201 159 CEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALY 201 (657)
Q Consensus 159 ~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~ 201 (657)
-+.. . ..-..+...+...+++ |++.+||..|+--+.
T Consensus 160 Qe~~-~-----neen~~~n~l~~~vqn-DPS~EVRr~allni~ 195 (885)
T COG5218 160 QEME-L-----NEENRIVNLLKDIVQN-DPSDEVRRLALLNIS 195 (885)
T ss_pred Hhcc-C-----ChHHHHHHHHHHHHhc-CcHHHHHHHHHHHee
Confidence 4322 1 1112234445555555 899999998876543
No 157
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=0.44 Score=51.88 Aligned_cols=90 Identities=13% Similarity=0.122 Sum_probs=72.5
Q ss_pred HhhhcCcchhhHHHHHHHHHHhhc--CCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCcc
Q 006201 373 EENITKQEWRQREAATYAFGSILE--GPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPI 450 (657)
Q Consensus 373 ~~~l~~~~~~~r~aal~~l~~i~~--~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 450 (657)
...+++++-..|-.++.+|+.... .+.++.+.|.+++..|.++..+ .+.+|-+...|+.|+.+++...++ .
T Consensus 809 ~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~-~~k~~L~v~~a~~~i~~m~~~sgD------F 881 (1014)
T KOG4524|consen 809 IHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECL-LCKDPLIVQRAFSCIEQMGKYSGD------F 881 (1014)
T ss_pred HHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHH-hcCchHHHHHHHHHHHHHHHHhhh------H
Confidence 346778888999999988876332 1235778889999999999999 999999999999999999987752 3
Q ss_pred CCcccHHHHHHHHHHHccc
Q 006201 451 INQGNCQQIISVLLQSMKD 469 (657)
Q Consensus 451 ~~~~~~~~il~~l~~~l~d 469 (657)
..+.++..++|.+-..+.+
T Consensus 882 v~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 882 VASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5678899999988876664
No 158
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=96.83 E-value=0.084 Score=54.00 Aligned_cols=230 Identities=14% Similarity=0.109 Sum_probs=145.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhcC---cccHHHHHHHHHhc---CCCChhHHHHHHHHHhhhcccchhhhHHHh
Q 006201 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQN---LPGFLLSLAGELVN---DEKPVESRKLAGLILKNALDAKEQHRKFEL 78 (657)
Q Consensus 5 l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~---~~~~~~~L~~~l~~---~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~ 78 (657)
+.+++..+.|+|+..|......|.++-.+- .+.....+..++.+ +.....--.-.+.+++..++..
T Consensus 135 i~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf-------- 206 (409)
T PF01603_consen 135 IKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGF-------- 206 (409)
T ss_dssp HHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT---------
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhcc--------
Confidence 567888889999999999999998865541 12222223333331 1223333333455666666531
Q ss_pred hhhcccCChHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHH
Q 006201 79 VQRWLSLDSSVKAQIKSFILKTLSSPA-HDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGY 157 (657)
Q Consensus 79 ~~~~~~l~~~~~~~i~~~ll~~l~~~~-~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~ 157 (657)
-..+.++.+..++..++.+...+. ......++.++..+...+ | ..-..++..++..---.+..-....+.-+..
T Consensus 207 ---~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd-p-~l~~~~i~~llk~WP~t~s~Kev~FL~el~~ 281 (409)
T PF01603_consen 207 ---AVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD-P-SLAEPVIKGLLKHWPKTNSQKEVLFLNELEE 281 (409)
T ss_dssp ----SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH--G-GGHHHHHHHHHHHS-SS-HHHHHHHHHHHHH
T ss_pred ---CCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC-c-hhHHHHHHHHHHhCCCCCchhHHHHHHHHHH
Confidence 123678888888888888888775 677889999999999887 4 2334555566665555566666677888888
Q ss_pred HhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHH--HhhchhhcCChhhHHHHHHHHHhhcc----CC
Q 006201 158 ICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNA--LGFAQANFSNDMERDYIMRVVCEATL----SP 231 (657)
Q Consensus 158 i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~--~~~~~~~~~~~~~~~~il~~l~~~~~----~~ 231 (657)
+++..++..+ ......++..+..++. +.+..|...|+..+.+- +..+.+ ....+++.+...+. ..
T Consensus 282 il~~~~~~~f-~~i~~~lf~~la~ci~--S~h~qVAErAl~~w~n~~~~~li~~------~~~~i~p~i~~~L~~~~~~H 352 (409)
T PF01603_consen 282 ILEVLPPEEF-QKIMVPLFKRLAKCIS--SPHFQVAERALYFWNNEYFLSLISQ------NSRVILPIIFPALYRNSKNH 352 (409)
T ss_dssp HHTT--HHHH-HHHHHHHHHHHHHHHT--SSSHHHHHHHHGGGGSHHHHHHHHC------THHHHHHHHHHHHSSTTSS-
T ss_pred HHHhcCHHHH-HHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHCCHHHHHHHHh------ChHHHHHHHHHHHHHHHHHH
Confidence 8887755556 5667788888888988 68889988888865542 222211 12456666655442 22
Q ss_pred -cHHHHHHHHHHHHHHHHHHHHhhHH
Q 006201 232 -EVKIRQAAFECLVAISSTYYEKLAP 256 (657)
Q Consensus 232 -~~~~~~~~~~~l~~l~~~~~~~~~~ 256 (657)
+..+|..+..++..+.+..++.+..
T Consensus 353 Wn~~Vr~~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 353 WNQTVRNLAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp SSTTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 4678888888888888777765544
No 159
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.82 E-value=0.035 Score=57.92 Aligned_cols=189 Identities=18% Similarity=0.203 Sum_probs=124.8
Q ss_pred HHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhh
Q 006201 218 DYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEE 297 (657)
Q Consensus 218 ~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~ 297 (657)
..+++.+.+++...|..+|...+.-+-.++....+. .+-.++++.+...+.|.++-+|.+++.++..++..-.
T Consensus 329 ~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~--~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~----- 401 (690)
T KOG1243|consen 329 VRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQ--ILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS----- 401 (690)
T ss_pred cchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHH--hhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc-----
Confidence 468888888888899999988777776655443221 1224799999999999999999999988888775310
Q ss_pred cCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCc-hhchHHHHHhhh
Q 006201 298 YGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDI-VPLVMPFVEENI 376 (657)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~-~~~l~~~l~~~l 376 (657)
+..+. .-+++++.....|++ -.+|.-...|++.++....... -+.+.-.+...+
T Consensus 402 -----------------~~~Ln---~Ellr~~ar~q~d~~-----~~irtntticlgki~~~l~~~~R~~vL~~aftral 456 (690)
T KOG1243|consen 402 -----------------KRNLN---GELLRYLARLQPDEH-----GGIRTNTTICLGKIAPHLAASVRKRVLASAFTRAL 456 (690)
T ss_pred -----------------hhhhc---HHHHHHHHhhCcccc-----Ccccccceeeecccccccchhhhccccchhhhhhh
Confidence 01111 122333332222221 2456666677777766542211 122223333456
Q ss_pred cCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhc
Q 006201 377 TKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLH 442 (657)
Q Consensus 377 ~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~ 442 (657)
.|+-...|.|++.++.+..+.... ...-..|+|.+.... .|++..||..|..++..+-....
T Consensus 457 kdpf~paR~a~v~~l~at~~~~~~---~~va~kIlp~l~pl~-vd~e~~vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 457 KDPFVPARKAGVLALAATQEYFDQ---SEVANKILPSLVPLT-VDPEKTVRDTAEKAIRQFLEKLE 518 (690)
T ss_pred cCCCCCchhhhhHHHhhcccccch---hhhhhhccccccccc-cCcccchhhHHHHHHHHHHhhhh
Confidence 777778899999999988876532 233456778888888 89999999999999988777654
No 160
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.81 E-value=0.42 Score=48.49 Aligned_cols=203 Identities=9% Similarity=0.048 Sum_probs=109.6
Q ss_pred CcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHHHHHHhcCCCChHHHHHHH
Q 006201 34 NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTAS 113 (657)
Q Consensus 34 ~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa 113 (657)
+.+.+...+++++.. ...+++.+....++-..++...+ ....+..... .....-..++..|..++..+...++
T Consensus 50 ~~~~y~~~~l~ll~~-~~~~d~vqyvL~Li~dll~~~~~-----~~~~f~~~~~-~~~~~~~~fl~lL~~~d~~i~~~a~ 122 (429)
T cd00256 50 LSGQYVKTFVNLLSQ-IDKDDTVRYVLTLIDDMLQEDDT-----RVKLFHDDAL-LKKKTWEPFFNLLNRQDQFIVHMSF 122 (429)
T ss_pred cHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHhchH-----HHHHHHHHhh-ccccchHHHHHHHcCCchhHHHHHH
Confidence 447888888898876 45788888888888887765321 0111111100 0112234455677778889999999
Q ss_pred HHHHHHHhhhcCCCCC----chHHHHHHHhhcCC-ChhHHHHHHHHHHHHhhhcc-ccccchhhHhHHHHHHHhccCCCC
Q 006201 114 QVVAKVAGIELPHKQW----PELIGALLSNIHQL-PPHTKQATLETLGYICEEVS-SDAVEQDHVNKILTAVVQGMNASE 187 (657)
Q Consensus 114 ~~l~~i~~~~~~~~~~----~~l~~~l~~~l~~~-~~~~~~~~l~~l~~i~~~~~-~~~l~~~~~~~l~~~l~~~l~~~~ 187 (657)
.+++.++... +...- +.+++.+...+.++ +...+..++.|+..++..-. ...+ .. ...++.+...++...
T Consensus 123 ~iLt~l~~~~-~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f-~~--~~~v~~L~~~L~~~~ 198 (429)
T cd00256 123 SILAKLACFG-LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAF-VL--ADGVPTLVKLLSNAT 198 (429)
T ss_pred HHHHHHHhcC-ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHH-HH--ccCHHHHHHHHhhcc
Confidence 9999998764 21122 22445566666554 45667788899988876421 0111 00 113455555555312
Q ss_pred CCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccC-CcHHHHHHHHHHHHHHHHH
Q 006201 188 SNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLS-PEVKIRQAAFECLVAISST 249 (657)
Q Consensus 188 ~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~l~~l~~~ 249 (657)
.+..+...++=|+=-+ .|-++ .........+++.+...++. ..+++-.-++.++..++..
T Consensus 199 ~~~Ql~Y~~ll~lWlL-SF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~ 259 (429)
T cd00256 199 LGFQLQYQSIFCIWLL-TFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISK 259 (429)
T ss_pred ccHHHHHHHHHHHHHH-hccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence 2444554444443221 12111 10000112356666555543 4456666666777776663
No 161
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=0.95 Score=48.25 Aligned_cols=156 Identities=12% Similarity=0.118 Sum_probs=104.0
Q ss_pred chHHHHHHHhhcCC-ChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhch
Q 006201 130 PELIGALLSNIHQL-PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQ 208 (657)
Q Consensus 130 ~~l~~~l~~~l~~~-~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 208 (657)
.+-++.|+..+.+. =..-|+.|++.|..+.+.+. . .....-++.+++.|..+-.++++-..+++++..++..-.
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR-~----~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd 95 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYR-E----EVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD 95 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHH-H----HHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc
Confidence 45666666665443 34568889999999998883 2 112233455666666534678899999999988775421
Q ss_pred --hhcCChh------hH--------HHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhH---HHHHHHHHHHH
Q 006201 209 --ANFSNDM------ER--------DYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYI---QDIFNITAKAV 269 (657)
Q Consensus 209 --~~~~~~~------~~--------~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~---~~l~~~~~~~~ 269 (657)
....++. .| ...+..+..++...|..||..+++.+..+.+..|..+...+ |.-+..++..+
T Consensus 96 ~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL 175 (970)
T KOG0946|consen 96 SPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL 175 (970)
T ss_pred chhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence 1111110 01 12456677777788999999999999999998886665433 33444555567
Q ss_pred hcCChHHHHHHHHHHHHHhHH
Q 006201 270 REDEEPVALQAIEFWSSVCDE 290 (657)
Q Consensus 270 ~~~~~~v~~~a~~~~~~l~~~ 290 (657)
.|..+-+|-.++-++..+...
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~ 196 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKD 196 (970)
T ss_pred hhhhhhhchhHHHHHHHHHcc
Confidence 777888999998887777654
No 162
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.80 E-value=0.019 Score=49.91 Aligned_cols=150 Identities=13% Similarity=0.210 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHcccchHHHHHHHHHHHHHHh
Q 006201 407 VNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQ 486 (657)
Q Consensus 407 ~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~l~~ 486 (657)
.+++++.+++.+..+.++.+|..+++++|.++.-= +|..+.+..-...-. .......+.-...+..
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALD------------P~~~k~~~~~~~~~~--~~~~~~~~~~~~l~~~ 73 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGALD------------PYKHKSIQKSLDSKS--SENSNDESTDISLPMM 73 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccC------------cHHHhcccccCCccc--cccccccchhhHHhhc
Confidence 47788888888855667999999999999887641 222221111100000 0000000000111111
Q ss_pred hccCCCCCCCCCchhHH-HHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhc
Q 006201 487 GFEDAISPSSPLTPFFQ-EIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQK 565 (657)
Q Consensus 487 ~~~~~~~~~~~l~~~~~-~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 565 (657)
.. ......|++ -.+..|++.+++... ...+..++.++..+.+..|..+.||+++++|.++..+.++-
T Consensus 74 ~~------~~~~ee~y~~vvi~~L~~iL~D~sL--s~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~---- 141 (160)
T PF11865_consen 74 GI------SPSSEEYYPTVVINALMRILRDPSL--SSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCP---- 141 (160)
T ss_pred cC------CCchHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCC----
Confidence 11 112334444 557888999988774 45566899999999999999999999999999999888631
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHH
Q 006201 566 LSSDEREKQNEIQGLLCGCLQVIIQK 591 (657)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~l~~l~~~ 591 (657)
+ .+++..+.-++.++.-
T Consensus 142 ----~-----~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 142 ----D-----SLREFYFQQLADLVSI 158 (160)
T ss_pred ----H-----HHHHHHHHHHHHHHHH
Confidence 1 2455566666666554
No 163
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=96.79 E-value=2.3 Score=52.45 Aligned_cols=439 Identities=13% Similarity=0.153 Sum_probs=229.7
Q ss_pred chHHHH-HHHhhcCCChhHHHHHHHHHHHHhhhccc-cccc---hhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHH
Q 006201 130 PELIGA-LLSNIHQLPPHTKQATLETLGYICEEVSS-DAVE---QDHVNKILTAVVQGMNASESNNDVRLAATRALYNAL 204 (657)
Q Consensus 130 ~~l~~~-l~~~l~~~~~~~~~~~l~~l~~i~~~~~~-~~l~---~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~ 204 (657)
+.++.. +...+...+...|..+..++..++..... .... -..+..++..+...... ++++.+|...+..+..
T Consensus 479 ~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia-~~~~~i~~~v~~~l~~-- 555 (2341)
T KOG0891|consen 479 TLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIA-DTDPDIRIRVLSSLNE-- 555 (2341)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhcc-CCCcchhhhHHhhhcc--
Confidence 444444 33345566788888887777777665411 0000 12345556666555444 7888888777666551
Q ss_pred hhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCC-hHHHHHHHHH
Q 006201 205 GFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDE-EPVALQAIEF 283 (657)
Q Consensus 205 ~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~v~~~a~~~ 283 (657)
.|...--.+..+..++..+.+....++..+...++++++..|.++.+++.........-++-.. ..+...+...
T Consensus 556 -----~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~ 630 (2341)
T KOG0891|consen 556 -----RFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKL 630 (2341)
T ss_pred -----chhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHH
Confidence 1111001134555566666677788888999999999888887777776654433322222111 1111111111
Q ss_pred HHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCC
Q 006201 284 WSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDD 363 (657)
Q Consensus 284 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~ 363 (657)
...+... ....+.++..+++-.++..+.+.+ -.+-+++..+++.++...|..
T Consensus 631 ~~~~i~~-------------------~~~~i~~~v~~~l~~~~~~~~~~~---------s~~~~~~~~~~~eL~~v~g~~ 682 (2341)
T KOG0891|consen 631 LCELIIS-------------------SPVLISPYVGPILLVLLPKLQDPS---------SGVEKAVLETIGELCAVGGEE 682 (2341)
T ss_pred hhHHHHH-------------------HHHHHHhhcCchHHHHHHHHhccc---------hhhHHHHHHHHHHHHHhccch
Confidence 1111111 112344444444444444343211 134457788888988888743
Q ss_pred c---hhchHHHHHhhhcC-cchhhHHHHHHHHHHhhcCCCCCcchHH--HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 006201 364 I---VPLVMPFVEENITK-QEWRQREAATYAFGSILEGPSPEKLVPL--VNIALNFMLTALMQDPNNHVKDTTAWTLGRM 437 (657)
Q Consensus 364 ~---~~~l~~~l~~~l~~-~~~~~r~aal~~l~~i~~~~~~~~~~~~--~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l 437 (657)
+ ...+++.+.+.+.+ .+...|.+++.+++.+....+ -.+.|+ .+.++..+...+..-....+|+++...+|..
T Consensus 683 ~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~-~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~ 761 (2341)
T KOG0891|consen 683 MVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTG-YVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLL 761 (2341)
T ss_pred hhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccc-eEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhh
Confidence 3 23455555555544 346789999999999876432 122332 2445555555441234567899999888843
Q ss_pred HhhhccCcCCCccCCcccHHHHHHHH--HHHccc--chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHH-HHHHHHHHh
Q 006201 438 FEFLHGSTLETPIINQGNCQQIISVL--LQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQ-EIVQALLTV 512 (657)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~il~~l--~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~-~i~~~L~~~ 512 (657)
... .++........ .+.... +... ....+...+.+ .. ..+++ .-+..+...
T Consensus 762 g~~------------d~~~~~~~~~~~~~~~~~~~~k~~~------~~~~~~~~~~~-----~~-~e~~p~v~I~~l~~~ 817 (2341)
T KOG0891|consen 762 GAL------------DPYKHKVTEGTSASKISSEQIKSDI------DISLLESGVNP-----SN-DEYYPAVTIHALMGI 817 (2341)
T ss_pred ccc------------chhHHHHHhhhhhHhhhhccccccc------hHHHHHhhhhh-----hh-hhhhhHHHHHHHhhh
Confidence 332 33334333333 222211 1101 11112211111 11 22222 122244444
Q ss_pred hccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 006201 513 THREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKL 592 (657)
Q Consensus 513 l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 592 (657)
+.+.. ...-....+.+...+....+..+..+.++++|.++..-... +.+... ....-++....-.
T Consensus 818 l~d~~--~~~~l~~~~~a~~~i~~~~~~~~~l~l~qv~~~~~~~~r~~------~~~~~~-------f~~~q~~~~~~~~ 882 (2341)
T KOG0891|consen 818 LKDPS--LSIHHTAVAQAIMHIFQSLGLKCVLFLDQVIPTLIDVMRSC------PPNLRE-------FYFQQLTSLVAIV 882 (2341)
T ss_pred hhhhh--hHHHHHHhhhchhHHHHhhccchhhhHHHHHHHHHHHHHhc------CcchhH-------HHHHhhhhhhhcc
Confidence 54443 12333467778888888888889999999988876544321 111111 1222222223323
Q ss_pred CCCcchhhHhhHHHHHHHHHHHHHHcccCCcchhhHHHHHHHHHHHhchhhhhcccccc
Q 006201 593 GSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGLCHHRRCCWGL 651 (657)
Q Consensus 593 ~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~~~~l~~l~~~~g~~f~~y~~~~~ 651 (657)
+.. ..+|.+.+...+..... .+..+.-.....+..+..+++..|.+|++..+
T Consensus 883 ~~h------~~~~~~~i~~~i~~~~~-~~~~l~~~~~~l~~~i~~~l~~~f~~~l~~~~ 934 (2341)
T KOG0891|consen 883 RQH------IRPYMESIFTLIKDFWP-PDTSLQITIISLIEDIAVALGGEFKKYLPELL 934 (2341)
T ss_pred chh------HhhhhhhHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhc
Confidence 333 55555555544443333 23344455577788888889999999988654
No 164
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.77 E-value=0.19 Score=49.23 Aligned_cols=111 Identities=17% Similarity=0.354 Sum_probs=80.9
Q ss_pred hHHHHHH-HhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhch-
Q 006201 131 ELIGALL-SNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQ- 208 (657)
Q Consensus 131 ~l~~~l~-~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~- 208 (657)
++++.++ ..+++.++.+|+.|++|++-.+-.- .....+-++.+.+.+. ..+..+|..|++++..++....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld------~~~a~~~l~l~~~~~~--~~~~~v~~~al~~l~Dll~~~g~ 97 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLD------KELAKEHLPLFLQALQ--KDDEEVKITALKALFDLLLTHGI 97 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC------hHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHcCc
Confidence 6666655 5678889999999999999765532 3334555677777775 4589999999999999876432
Q ss_pred hhcCCh------hhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHH
Q 006201 209 ANFSND------MERDYIMRVVCEATLSPEVKIRQAAFECLVAISST 249 (657)
Q Consensus 209 ~~~~~~------~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 249 (657)
..+... .....+++.+...+.+.+++++..+++.++++.-.
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 98 DIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred hhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 222211 11246788888888888999999999999998743
No 165
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=96.75 E-value=0.028 Score=57.57 Aligned_cols=135 Identities=10% Similarity=0.202 Sum_probs=101.6
Q ss_pred CCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhcCChhHHH
Q 006201 493 SPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDERE 572 (657)
Q Consensus 493 ~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~ 572 (657)
..++++.|++..++..|+..+...++. + -+.+++|+.+++...++...|+...+++.+...+.....|| .++
T Consensus 15 ~~~~di~p~~~~ll~~Lf~~i~~~~s~-E--NeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNP----snP- 86 (435)
T PF03378_consen 15 FSKADIQPFAQQLLQNLFALIEKPGSA-E--NEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNP----SNP- 86 (435)
T ss_dssp S-GGGTTCCHHHHHHHHHHHHHTT-ST-C---HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS-------H-
T ss_pred ECHHHhhhhHHHHHHHHHHHHhcCCCc-c--chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCC----CCc-
Confidence 346789999999999999999775531 2 23689999999999999999999999999998888776543 222
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHcccCCcchhhHHHHHHHHHHHhc
Q 006201 573 KQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATG 640 (657)
Q Consensus 573 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~~~~l~~l~~~~g 640 (657)
..-+..+|+++.+++...+.+ +.....+-+.+++.+..+|+.+-.+....++-.++-|.+...
T Consensus 87 ---~FnHylFEsi~~lir~~~~~~--~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~ 149 (435)
T PF03378_consen 87 ---RFNHYLFESIGALIRFVCEAD--PEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRP 149 (435)
T ss_dssp ---HHHHHHHHHHHHHHHHS-GGG--HH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS
T ss_pred ---chhhhHHHHHHHHHHhccCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 355678999999999876543 233446778899999999998777778888888888888765
No 166
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=96.69 E-value=0.14 Score=52.48 Aligned_cols=232 Identities=12% Similarity=0.126 Sum_probs=129.1
Q ss_pred hhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHH
Q 006201 382 RQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIIS 461 (657)
Q Consensus 382 ~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~ 461 (657)
....+..+.+..+-+.+. ......+..+...+.....+..||+--.-.+.+++.+.....+.. +.....+-..++|
T Consensus 45 ylMk~iMRvl~~~~e~~~-p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~---~~~v~~~E~~L~P 120 (435)
T PF03378_consen 45 YLMKCIMRVLSVLQEDIL-PIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEAD---PEAVSQFEEALFP 120 (435)
T ss_dssp HHHHHHHHHHHHSTTTTG-GGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGG---HH---HHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCC---hhHHHHHHHHHHH
Confidence 344444444444444431 222223333333333333234578888888888888888754210 1223356778888
Q ss_pred HHHHHcccc-hHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhccc
Q 006201 462 VLLQSMKDV-PNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD 540 (657)
Q Consensus 462 ~l~~~l~d~-~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~ 540 (657)
.+...|+.+ .+..-.+...++.+++.-. ...+.+.+..+++.|+...--.. ..++- .+...|..+++..+.
T Consensus 121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~-----~~~~p~~y~~L~~~Ll~p~lWe~--~gniP-alvrLL~a~i~k~~~ 192 (435)
T PF03378_consen 121 PFQEILQQDVQEFIPYVFQILAQLLELRP-----SSPLPDAYKQLFPPLLSPALWER--RGNIP-ALVRLLQAYIKKDPS 192 (435)
T ss_dssp HHHHHHHTT-TTTHHHHHHHHHHHHHHSS-------S--TTTGGGHHHHTSGGGGGS--TTTHH-HHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CCCCcHHHHHHHHHHcCcchhcc--CCCcC-cHHHHHHHHHHhCch
Confidence 888888743 4555677788888887632 24566677777777766432211 13443 566677788888776
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHccc
Q 006201 541 ETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIR 620 (657)
Q Consensus 541 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~ 620 (657)
.+. ...-+..++..++..+.+. ..|. ..++.+..++..++.+. +.||+..|+..++.-|+..
T Consensus 193 ~i~--~~~~l~~iLgvFQkLi~sk---~~D~--------~gF~LL~~iv~~~p~~~-----l~~yl~~I~~lll~RLq~s 254 (435)
T PF03378_consen 193 FIV--ANNQLEPILGVFQKLIASK---ANDH--------YGFDLLESIVENLPPEA-----LEPYLKQIFTLLLTRLQSS 254 (435)
T ss_dssp G------S-CHHHHHHHHHHHT-T---TCHH--------HHHHHHHHHHHHS-HHH-----HGGGHHHHHHHHHHHHHHC
T ss_pred hhc--chhhHHHHHHHHHHHHCCC---Ccch--------HHHHHHHHHHHHCCHHH-----HHHHHHHHHHHHHHHHhhC
Confidence 542 1123335555555555321 1222 37789999999998864 8899999999999999764
Q ss_pred -CCcchhhHHHHHHHHHHHhchhh
Q 006201 621 -SATAHEEAMLAIGALAYATGLCH 643 (657)
Q Consensus 621 -~~~v~~~~~~~l~~l~~~~g~~f 643 (657)
...........++.++...|.++
T Consensus 255 kT~kf~~~fv~F~~~~~~~~g~~~ 278 (435)
T PF03378_consen 255 KTEKFVKRFVVFLSLFAIKYGPDF 278 (435)
T ss_dssp --HHHHHHHHHHHHHHHHHH-HHH
T ss_pred CcHHHHHHHHHHHHHHHHHcCHHH
Confidence 22334455566677776666443
No 167
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.69 E-value=0.12 Score=56.47 Aligned_cols=196 Identities=20% Similarity=0.222 Sum_probs=134.4
Q ss_pred hcCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHHHHHHhcCCCChHHHHH
Q 006201 32 EQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARST 111 (657)
Q Consensus 32 ~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~ 111 (657)
...||+-++.+++.|.+ .-.|.=|+++|.+++.- ..|- ++-.---.|.+-++++|.++..++|..
T Consensus 467 ~r~PPeQLPiVLQVLLS----QvHRlRAL~LL~RFLDl----------GpWA-V~LaLsVGIFPYVLKLLQS~a~ELrpi 531 (1387)
T KOG1517|consen 467 SRTPPEQLPIVLQVLLS----QVHRLRALVLLARFLDL----------GPWA-VDLALSVGIFPYVLKLLQSSARELRPI 531 (1387)
T ss_pred cCCChHhcchHHHHHHH----HHHHHHHHHHHHHHhcc----------chhh-hhhhhccchHHHHHHHhccchHhhhhh
Confidence 34688888888898885 46788899999998863 3453 333344567888899999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCchHHHH-----HHHhhcC---CChhHHHHHHHHHHHHhhhccccccchhh--HhHHHHHHHh
Q 006201 112 ASQVVAKVAGIELPHKQWPELIGA-----LLSNIHQ---LPPHTKQATLETLGYICEEVSSDAVEQDH--VNKILTAVVQ 181 (657)
Q Consensus 112 aa~~l~~i~~~~~~~~~~~~l~~~-----l~~~l~~---~~~~~~~~~l~~l~~i~~~~~~~~l~~~~--~~~l~~~l~~ 181 (657)
++-+-++|...+ | ..--+|+.. .++.+.+ -+++.|-.+.-+|..|+..+ +. ++.. ...++...+.
T Consensus 532 LVFIWAKILAvD-~-SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf-~l--GQ~acl~~~li~iCle 606 (1387)
T KOG1517|consen 532 LVFIWAKILAVD-P-SCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF-KL--GQKACLNGNLIGICLE 606 (1387)
T ss_pred HHHHHHHHHhcC-c-hhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc-ch--hHHHhccccHHHHHHH
Confidence 999999999887 4 233344333 1222222 24577888888999999887 22 1221 2445666777
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHhhchhh-cCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHH
Q 006201 182 GMNASESNNDVRLAATRALYNALGFAQAN-FSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTY 250 (657)
Q Consensus 182 ~l~~~~~~~~vr~~al~~l~~~~~~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 250 (657)
.+++ ++.+-.|.-.+-||+.+-+-.... .. ..++.-...+...+.++.++||.+++-+|+.++...
T Consensus 607 ~lnd-~~~pLLrQW~~icLG~LW~d~~~Arw~--G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 607 HLND-DPEPLLRQWLCICLGRLWEDYDEARWS--GRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HhcC-CccHHHHHHHHHHHHHHhhhcchhhhc--cccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 7884 246788999999999865422111 10 111233445566777899999999999999999863
No 168
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.64 E-value=0.18 Score=49.42 Aligned_cols=111 Identities=15% Similarity=0.161 Sum_probs=86.6
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccch-
Q 006201 91 AQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQ- 169 (657)
Q Consensus 91 ~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~- 169 (657)
..+...++.++.+.++.+|..+-.|+|..+-.+. ..-.+.++.+.+.++.++..++..|++++..++-.++.+.+..
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~--~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~ 103 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK--ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSE 103 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccch
Confidence 4445566689999999999999999999998763 2446778888888877788999999999999988765444421
Q ss_pred ------hhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHh
Q 006201 170 ------DHVNKILTAVVQGMNASESNNDVRLAATRALYNALG 205 (657)
Q Consensus 170 ------~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 205 (657)
.....+...+.+.+. +.+++++..|++.+..++-
T Consensus 104 ~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 104 SDNDESVDSKSLLKILTKFLD--SENPELQAIAVEGLCKLLL 143 (298)
T ss_pred hccCccchHhHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHh
Confidence 123567778888888 4588999999999999764
No 169
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.64 E-value=0.017 Score=50.43 Aligned_cols=129 Identities=12% Similarity=0.237 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHH
Q 006201 456 CQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEV 534 (657)
Q Consensus 456 ~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l 534 (657)
++..+|.++.+|.+ ...-+--|...+..+++.. .+..+.|.+++++..+-+.++..+ ..+...++.+|..+
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~-----~~~kilPvlPqLI~plk~AL~tr~---~~V~~~~L~~Lq~L 107 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERG-----GGEKILPVLPQLIIPLKRALNTRD---PEVFCATLKALQQL 107 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhc-----chhHHHHHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHH
Confidence 57889999999986 4556667777777777761 256789999999999999998775 67777899999999
Q ss_pred ---HHhcccccHHHHHHHHHHHHHHHHHHHhhhcCChh-HHHHHHHHHHHHHHHHHHHHHHhCCC
Q 006201 535 ---VRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSD-EREKQNEIQGLLCGCLQVIIQKLGSS 595 (657)
Q Consensus 535 ---~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~ 595 (657)
....|+...||+.+++|.+--..+...+ .++. +......++..+-+++..+-+.-|++
T Consensus 108 v~~~~~vG~aLvPyyrqLLp~ln~f~~k~~n---~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 108 VTSSDMVGEALVPYYRQLLPVLNLFKNKNVN---LGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhcccC---CCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 5556677899999999876432222211 1110 00011245666778888777776665
No 170
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.016 Score=54.12 Aligned_cols=154 Identities=14% Similarity=0.154 Sum_probs=105.4
Q ss_pred CcchHhhhHHHHHHHHHhhcCCCchhc---hHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHH
Q 006201 341 GAWNIAMAGGTCLGLVARTVGDDIVPL---VMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTA 417 (657)
Q Consensus 341 ~~~~~r~~a~~~L~~l~~~~~~~~~~~---l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~ 417 (657)
++|.....+...+.+++..-++.+.+. ++-.+.+.+++....+-.+|+++++.|....+ +.+...++..+-.|+..
T Consensus 100 ~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln-~~i~~~ld~lv~~Ll~k 178 (334)
T KOG2933|consen 100 DDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLN-NSIDQELDDLVTQLLHK 178 (334)
T ss_pred HHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Confidence 348888888888888888766544443 34445566677777888999999999998763 44545555555655555
Q ss_pred hcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCC
Q 006201 418 LMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSS 496 (657)
Q Consensus 418 l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~ 496 (657)
- .+.+..||..|-.+|..+..... + ..+++.|+..++. +++++..++.++.+.+..++- ..
T Consensus 179 a-~~dnrFvreda~kAL~aMV~~vt----------p---~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v----~~ 240 (334)
T KOG2933|consen 179 A-SQDNRFVREDAEKALVAMVNHVT----------P---QKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGV----LP 240 (334)
T ss_pred h-cccchHHHHHHHHHHHHHHhccC----------h---HHHHHHHHHHHhhhchhhhhhhhccccccceeccc----cc
Confidence 4 67789999999999999888754 1 4566666666664 789999999888887776531 22
Q ss_pred CCchhHHHHHHHHHHhh
Q 006201 497 PLTPFFQEIVQALLTVT 513 (657)
Q Consensus 497 ~l~~~~~~i~~~L~~~l 513 (657)
...++.....+.+.+-.
T Consensus 241 ~~~~~~~dl~~a~~~~~ 257 (334)
T KOG2933|consen 241 VLLQGSCDLSRAAQEQG 257 (334)
T ss_pred hhhHhHHHHHHHHHhhh
Confidence 23344444444444433
No 171
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=96.51 E-value=0.25 Score=42.33 Aligned_cols=153 Identities=14% Similarity=0.175 Sum_probs=85.3
Q ss_pred HHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhhh--cCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcccccc
Q 006201 92 QIKSFILKTLSSPA--HDARSTASQVVAKVAGIE--LPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAV 167 (657)
Q Consensus 92 ~i~~~ll~~l~~~~--~~vr~~aa~~l~~i~~~~--~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l 167 (657)
.|++.|+.+|..++ ...-+.++.+++.+|... ++++.|++|-+.+.... ...+ ..|+.++..+--.+..+.+
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~-~~e~---~kA~~IF~~L~~~l~~efl 78 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS-ENEP---VKAFHIFICLPMPLYGEFL 78 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh-ccch---HHHHHHHHhCCchhhhhHH
Confidence 47888999988653 345556666666666654 36689999987777754 2222 4477777766522224555
Q ss_pred chhhHhHHHHHHHhccCCCC-CCHHHHHHHHH-HHHHHHhhchhhcCChhhH---HHHHHHHHhhccCCcH-HHHHHHHH
Q 006201 168 EQDHVNKILTAVVQGMNASE-SNNDVRLAATR-ALYNALGFAQANFSNDMER---DYIMRVVCEATLSPEV-KIRQAAFE 241 (657)
Q Consensus 168 ~~~~~~~l~~~l~~~l~~~~-~~~~vr~~al~-~l~~~~~~~~~~~~~~~~~---~~il~~l~~~~~~~~~-~~~~~~~~ 241 (657)
.+.++.++|.+.+.|.++. .+.+....|+. ++...+..+......+..+ ..+++.+..++..+.+ .....+++
T Consensus 79 -~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~~l~rgl~ 157 (174)
T PF04510_consen 79 -IPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVGFLRRGLR 157 (174)
T ss_pred -HHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 6788999999999998521 23333334443 2333343332211111110 2234444444444444 55555665
Q ss_pred HHHHHHHH
Q 006201 242 CLVAISST 249 (657)
Q Consensus 242 ~l~~l~~~ 249 (657)
-+.++++.
T Consensus 158 ~~e~~v~~ 165 (174)
T PF04510_consen 158 DFESFVSR 165 (174)
T ss_pred HHHHHHHH
Confidence 55555543
No 172
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.38 E-value=2.9 Score=48.55 Aligned_cols=176 Identities=14% Similarity=0.140 Sum_probs=100.2
Q ss_pred HHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcC
Q 006201 220 IMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYG 299 (657)
Q Consensus 220 il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~ 299 (657)
+++.|..-+..++..+|..++..++.+.......+..-.+.+...++..+.|..+++|..+++....+--..+++
T Consensus 260 vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~----- 334 (1266)
T KOG1525|consen 260 VIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSI----- 334 (1266)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchh-----
Confidence 344444445568899999999999999987776666556677777788888999999999887755543322111
Q ss_pred CCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCc
Q 006201 300 GDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQ 379 (657)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~ 379 (657)
.+.. .-. ..++..+-|+ ++ ++|....-....+. .+.-.+.|.++.++.+.+.|.
T Consensus 335 --------------~~~~----~~~--~~l~~~~~D~--~~---rir~~v~i~~~~v~-~~~l~~~~~ll~~~~eR~rDK 388 (1266)
T KOG1525|consen 335 --------------AKAS----TIL--LALRERDLDE--DV---RVRTQVVIVACDVM-KFKLVYIPLLLKLVAERLRDK 388 (1266)
T ss_pred --------------hhHH----HHH--HHHHhhcCCh--hh---hheeeEEEEEeehh-HhhhhhhHHHHHHHHHHHhhh
Confidence 1110 001 1112111121 11 22221100000000 001123344778888888999
Q ss_pred chhhHHHHHHHHHHhhcC--C----CCCcchHHHHHHHHHHHHHhcCCCcHHHH
Q 006201 380 EWRQREAATYAFGSILEG--P----SPEKLVPLVNIALNFMLTALMQDPNNHVK 427 (657)
Q Consensus 380 ~~~~r~aal~~l~~i~~~--~----~~~~~~~~~~~i~~~l~~~l~~d~~~~vr 427 (657)
.|++|.-|+..|..+-.. | +.....+.+..|-..++..+ ...+..-|
T Consensus 389 k~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~-y~~~~~~r 441 (1266)
T KOG1525|consen 389 KIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLY-YENDLDDR 441 (1266)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhH-hhccccHH
Confidence 999999999998876652 1 12333444555556666665 44444445
No 173
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.32 E-value=0.045 Score=47.82 Aligned_cols=125 Identities=15% Similarity=0.143 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHh
Q 006201 408 NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQ 486 (657)
Q Consensus 408 ~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~ 486 (657)
+..+|.....+ ......-|.-|...+..+.+... +...-+.+++++..+-++|+. ++.|...+..+|..++.
T Consensus 37 ~~~Lpif~dGL-~Et~~Py~flA~~g~~dll~~~~------~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~ 109 (183)
T PF10274_consen 37 HHYLPIFFDGL-RETEHPYRFLARQGIKDLLERGG------GEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVT 109 (183)
T ss_pred hhHHHHHHhhh-hccCccHHHHHHHHHHHHHHhcc------hhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 44567777777 54444445566666666666522 123457788888888888886 79999999999999954
Q ss_pred hccCCCCCCCCCchhHHHHHHHHHHhhcccc--------chhhhHHHHHHHHHHHHHHhccccc
Q 006201 487 GFEDAISPSSPLTPFFQEIVQALLTVTHRED--------AGESRLRTAAYETLNEVVRCSTDET 542 (657)
Q Consensus 487 ~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~--------~~~~~~~~~~~~al~~l~~~~~~~~ 542 (657)
... ..+..+.||+.++++.+--..+... ....++++.+-++|..+-+..|++.
T Consensus 110 ~~~---~vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA 170 (183)
T PF10274_consen 110 SSD---MVGEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDA 170 (183)
T ss_pred hhh---hhhHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhH
Confidence 321 1246789999999988864333321 0135666667777777777777653
No 174
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=96.31 E-value=0.065 Score=42.89 Aligned_cols=101 Identities=19% Similarity=0.320 Sum_probs=73.7
Q ss_pred CchhHHHHHHHHHHhhcccc-chhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHH
Q 006201 498 LTPFFQEIVQALLTVTHRED-AGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNE 576 (657)
Q Consensus 498 l~~~~~~i~~~L~~~l~~~~-~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~ 576 (657)
+.+++-.++..+-..+.+.. ..+...|..++.+++.+++..+ +++....|.+...++..++. + +
T Consensus 5 L~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~----~~i~~~~pQI~a~L~sal~~-------~----~ 69 (107)
T PF08064_consen 5 LQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGG----SHISSARPQIMACLQSALEI-------P----E 69 (107)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHhCC-------h----h
Confidence 45677777777777776611 0134556689999999999666 46666666777777665421 1 4
Q ss_pred HHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHc
Q 006201 577 IQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFA 618 (657)
Q Consensus 577 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~ 618 (657)
++..+++|...+++.++.++ ..|++++++-.++..+.
T Consensus 70 l~~~al~~W~~fi~~L~~~~-----l~~ll~~~~~~l~~~~~ 106 (107)
T PF08064_consen 70 LREEALSCWNCFIKTLDEED-----LGPLLDQIFAILLPLWD 106 (107)
T ss_pred hHHHHHHHHHHHHHHCCHHH-----HHHHHHHHHHHHHHhcc
Confidence 67789999999999999987 88999998888877653
No 175
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=96.26 E-value=0.067 Score=42.48 Aligned_cols=100 Identities=21% Similarity=0.358 Sum_probs=73.2
Q ss_pred CCchhHHHHHHHHHHhhccccchhh--hHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHH
Q 006201 497 PLTPFFQEIVQALLTVTHREDAGES--RLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQ 574 (657)
Q Consensus 497 ~l~~~~~~i~~~L~~~l~~~~~~~~--~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~ 574 (657)
.+.+++-.+++.+-..+.+.+. .. .-|..++.+++.+++..| +++....|.+...|+..++.
T Consensus 4 fL~~~~LGil~~f~~~l~d~~g-~~~~~ek~~~i~ai~~lI~~~g----~~i~~a~pQI~acL~saL~~----------- 67 (107)
T smart00802 4 FLKDHFLGILAVFSNILHDSSG-KKPYNEKKRALRSIGFLIKLMG----KHISSALPQIMACLQSALEI----------- 67 (107)
T ss_pred HHHHHHHHHHHHHHHHHcCccc-CCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCc-----------
Confidence 3556777788888887776552 22 336689999999999877 46666666676666665421
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHH
Q 006201 575 NEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVF 617 (657)
Q Consensus 575 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l 617 (657)
++++..+++|...+++.+..++ ..|.+++++-.+++.+
T Consensus 68 ~eL~~~al~~W~~~i~~L~~~~-----l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 68 PELRSLALRCWHVLIKTLKEEE-----LGPLLDQIFAAILPLW 105 (107)
T ss_pred hhHHHHHHHHHHHHHHhCCHHH-----HHHHHHHHHHHHHHhc
Confidence 1478889999999999999886 7777887777766654
No 176
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.097 Score=50.42 Aligned_cols=146 Identities=16% Similarity=0.155 Sum_probs=98.7
Q ss_pred cchhhHHHHHHHHHHhhcCCCCCcchHHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccH-
Q 006201 379 QEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNC- 456 (657)
Q Consensus 379 ~~~~~r~aal~~l~~i~~~~~~~~~~~~~-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~- 456 (657)
.+...|+.|+.-|-.+++..+ ... .++ ...+..++..+ ++.+..+|..|+|++|..+..-+ ..+...+
T Consensus 95 ~~le~ke~ald~Le~lve~iD-nAn-dl~~~ggl~~ll~~l-~~~~~~lR~~Aa~Vigt~~qNNP-------~~Qe~v~E 164 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDID-NAN-DLISLGGLVPLLGYL-ENSDAELRELAARVIGTAVQNNP-------KSQEQVIE 164 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhh-hHH-hHhhccCHHHHHHHh-cCCcHHHHHHHHHHHHHHHhcCH-------HHHHHHHH
Confidence 457889999999988887652 211 111 12345566688 99999999999999999988754 1222211
Q ss_pred HHHHHHHHHHccc--chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHH-HHHHHHHHhhccccchhhhHHHHHHHHHHH
Q 006201 457 QQIISVLLQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQ-EIVQALLTVTHREDAGESRLRTAAYETLNE 533 (657)
Q Consensus 457 ~~il~~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~-~i~~~L~~~l~~~~~~~~~~~~~~~~al~~ 533 (657)
...++.|+..+.. +..+|..|..|+..++.+..+ ....|+. .=+..|..++++.+. +..++..++..++.
T Consensus 165 ~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~------g~~~fl~~~G~~~L~~vl~~~~~-~~~lkrK~~~Ll~~ 237 (342)
T KOG2160|consen 165 LGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKP------GQDEFLKLNGYQVLRDVLQSNNT-SVKLKRKALFLLSL 237 (342)
T ss_pred cccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcH------HHHHHHhcCCHHHHHHHHHcCCc-chHHHHHHHHHHHH
Confidence 2356677776663 467889999999999987532 2222321 116677888877543 46777788888999
Q ss_pred HHHhcccc
Q 006201 534 VVRCSTDE 541 (657)
Q Consensus 534 l~~~~~~~ 541 (657)
+++....+
T Consensus 238 Ll~~~~s~ 245 (342)
T KOG2160|consen 238 LLQEDKSD 245 (342)
T ss_pred HHHhhhhh
Confidence 98877643
No 177
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.03 E-value=0.065 Score=59.45 Aligned_cols=173 Identities=16% Similarity=0.186 Sum_probs=115.3
Q ss_pred hhhHHHHHHHHHhhcCCCc---hhchHHHHHhhhcCc-chh-hHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcC
Q 006201 346 AMAGGTCLGLVARTVGDDI---VPLVMPFVEENITKQ-EWR-QREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQ 420 (657)
Q Consensus 346 r~~a~~~L~~l~~~~~~~~---~~~l~~~l~~~l~~~-~~~-~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~ 420 (657)
|+.|..+|..++..+|..+ +|.+.+++...+... +-. .--..+..+.++.... ...+.+ +-+.+|.+...+ .
T Consensus 750 rrgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m-~s~l~~-~~~~l~~l~~~~-~ 826 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLM-HSFLHP-LGSLLPRLFFFV-R 826 (1549)
T ss_pred hhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhh-hhhhhh-hhhhhhHHHHhc-c
Confidence 6788999999999998643 566666655544321 001 0011111122222111 122333 445677888888 9
Q ss_pred CCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHcccc-hHHHH-HHHHHHHHHHhhccCCCCCCCCC
Q 006201 421 DPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDV-PNVAE-KACGALYFLAQGFEDAISPSSPL 498 (657)
Q Consensus 421 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~-~~v~~-~a~~al~~l~~~~~~~~~~~~~l 498 (657)
+.++.+|.+++.|++.+.+... .+.+..+++.++..+++. .-++. .|...+..++..+ ...+
T Consensus 827 s~~~a~r~~~ar~i~~~~k~~~----------~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l------~~~l 890 (1549)
T KOG0392|consen 827 SIHIAVRYAAARCIGTMFKSAT----------RETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVL------MVGL 890 (1549)
T ss_pred cchHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhh------cccc
Confidence 9999999999999999998753 456677777777777763 34444 4444555555543 3568
Q ss_pred chhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhccc
Q 006201 499 TPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD 540 (657)
Q Consensus 499 ~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~ 540 (657)
.||..-+++.|++.+.+.. ..+|..+-++++.++...+.
T Consensus 891 ~~~~~Llv~pllr~msd~~---d~vR~aat~~fa~lip~~~l 929 (1549)
T KOG0392|consen 891 VPYNPLLVVPLLRRMSDQI---DSVREAATKVFAKLIPLLPL 929 (1549)
T ss_pred cccceeehhhhhcccccch---HHHHHHHHHHHHHHhccccc
Confidence 8999999999999998764 67899999999999988763
No 178
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.78 Score=44.40 Aligned_cols=176 Identities=22% Similarity=0.217 Sum_probs=107.9
Q ss_pred cCCChHHHHHHHHHHHHHHhc--C-----cccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccC
Q 006201 13 QSVDGTVRKQAEESLKQYQEQ--N-----LPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSL 85 (657)
Q Consensus 13 ~s~d~~~r~~A~~~L~~~~~~--~-----~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l 85 (657)
.+.+.+.+..|-..|..+.++ + .-+++..++..+. +.+..+|..|+.++...+++.... ++..
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~--~~~~~lR~~Aa~Vigt~~qNNP~~-Qe~v------- 162 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLE--NSDAELRELAARVIGTAVQNNPKS-QEQV------- 162 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhc--CCcHHHHHHHHHHHHHHHhcCHHH-HHHH-------
Confidence 345778888898888877664 1 2455666666555 469999999999999988765321 0000
Q ss_pred ChHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHhhhcCCC----CCchHHHHHHHhhcC--CChhHHHHHHHHHHHH
Q 006201 86 DSSVKAQIKSFILKTLSSP-AHDARSTASQVVAKVAGIELPHK----QWPELIGALLSNIHQ--LPPHTKQATLETLGYI 158 (657)
Q Consensus 86 ~~~~~~~i~~~ll~~l~~~-~~~vr~~aa~~l~~i~~~~~~~~----~~~~l~~~l~~~l~~--~~~~~~~~~l~~l~~i 158 (657)
.-..-.+.|+..+.++ +..+|++|-.+++.+.+...|.. ..+. +..|...+++ .+...+..++..+..+
T Consensus 163 ---~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~L 238 (342)
T KOG2160|consen 163 ---IELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG-YQVLRDVLQSNNTSVKLKRKALFLLSLL 238 (342)
T ss_pred ---HHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-HHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 0012345677777765 46899999999999999865410 1122 3456666666 3556667778788877
Q ss_pred hhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHh
Q 006201 159 CEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALG 205 (657)
Q Consensus 159 ~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 205 (657)
.... ...- .......++.....+.. ..+.+++..++.++...+.
T Consensus 239 l~~~-~s~~-d~~~~~~f~~~~~~l~~-~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 239 LQED-KSDE-DIASSLGFQRVLENLIS-SLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHhh-hhhh-hHHHHhhhhHHHHHHhh-ccchhhhHHHHHHHHHHHH
Confidence 7654 1111 01112223333333332 3456777777777777654
No 179
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.96 E-value=0.24 Score=51.65 Aligned_cols=150 Identities=15% Similarity=0.197 Sum_probs=104.6
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCC--------chHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccc
Q 006201 93 IKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQW--------PELIGALLSNIHQLPPHTKQATLETLGYICEEVSS 164 (657)
Q Consensus 93 i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~--------~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~ 164 (657)
.++.+..+|.-++..||..|+.++-.+.-..-| +.- .+=+..+...+.|+-+.+|..|..-+..+...+ .
T Consensus 175 ~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dp-d~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f-W 252 (1005)
T KOG1949|consen 175 YKPILWRGLKARNSEVRSNAALLFVEAFPIRDP-DLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKF-W 252 (1005)
T ss_pred HhHHHHHhhccCchhhhhhHHHHHHHhccCCCC-CccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH-H
Confidence 345566678888999999999998776655444 221 222344556678888899988887777766665 5
Q ss_pred cccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHH
Q 006201 165 DAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLV 244 (657)
Q Consensus 165 ~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~ 244 (657)
+.+....+..++..+...+.. |+..+||.+.++++.-++.. + ... .....+++.+-..+.+.++.||.++++.+.
T Consensus 253 e~iP~~i~~~ll~kI~d~~a~-dt~s~VR~svf~gl~~~l~n-p--~sh-~~le~~Lpal~~~l~D~se~VRvA~vd~ll 327 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELAF-DTSSDVRCSVFKGLPMILDN-P--LSH-PLLEQLLPALRYSLHDNSEKVRVAFVDMLL 327 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhhh-ccchheehhHhcCcHHHHcC-c--cch-hHHHHHHHhcchhhhccchhHHHHHHHHHH
Confidence 555345567777777776665 67779999999988775531 1 111 122567777777888999999999999988
Q ss_pred HHHHH
Q 006201 245 AISST 249 (657)
Q Consensus 245 ~l~~~ 249 (657)
.+-..
T Consensus 328 ~ik~v 332 (1005)
T KOG1949|consen 328 KIKAV 332 (1005)
T ss_pred HHHhh
Confidence 87544
No 180
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=0.26 Score=51.43 Aligned_cols=204 Identities=9% Similarity=0.134 Sum_probs=121.7
Q ss_pred hhhhcccCChHHHHHHHHHHHHhcC-----CCChHHHHHHHHHHHHHHhhhcCCCCCchH-----HHHHHHhhcCCChhH
Q 006201 78 LVQRWLSLDSSVKAQIKSFILKTLS-----SPAHDARSTASQVVAKVAGIELPHKQWPEL-----IGALLSNIHQLPPHT 147 (657)
Q Consensus 78 ~~~~~~~l~~~~~~~i~~~ll~~l~-----~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l-----~~~l~~~l~~~~~~~ 147 (657)
+...|...+-+..++|-+..++.+. -+...+....-.+|+.++..---...-.++ -|.|...++..|..+
T Consensus 111 ~frAWkea~~dL~eeiE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~V 190 (1005)
T KOG1949|consen 111 YFRAWKEASGDLLEEIENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEV 190 (1005)
T ss_pred HHHHHHHhccchHHHHhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhh
Confidence 3467777777777777777666543 222344445555566655443110122222 255667788889999
Q ss_pred HHHHHHHHHHHhhhccccccchhhHhHHHH----HHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHH
Q 006201 148 KQATLETLGYICEEVSSDAVEQDHVNKILT----AVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRV 223 (657)
Q Consensus 148 ~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~----~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~ 223 (657)
|.+|+.++-.+..-.+|+.- ....+.+++ .+...|. |+-+.||..|++-+...+.-+...+.. .....++.-
T Consensus 191 rsnAa~lf~~~fP~~dpd~~-~e~mD~i~~kQf~~l~~LL~--d~~p~VRS~a~~gv~k~~s~fWe~iP~-~i~~~ll~k 266 (1005)
T KOG1949|consen 191 RSNAALLFVEAFPIRDPDLH-AEEMDSIIQKQFEELYSLLE--DPYPMVRSTAILGVCKITSKFWEMIPP-TILIDLLKK 266 (1005)
T ss_pred hhhHHHHHHHhccCCCCCcc-HHHHHHHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHHHHcCH-HHHHHHHHH
Confidence 99999888877665544432 233333333 4556677 788999998888877766532222211 111233443
Q ss_pred HHh-hccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 006201 224 VCE-ATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSV 287 (657)
Q Consensus 224 l~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l 287 (657)
+.. ...+...+||-++++++..++..--. -+.+..+++.+-..+.|..+.+|..+.+.+..+
T Consensus 267 I~d~~a~dt~s~VR~svf~gl~~~l~np~s--h~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 267 ITDELAFDTSSDVRCSVFKGLPMILDNPLS--HPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHHHhhhccchheehhHhcCcHHHHcCccc--hhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 333 23355679999999999998764211 134455666555667788888887766655443
No 181
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=2.1 Score=45.49 Aligned_cols=88 Identities=18% Similarity=0.160 Sum_probs=58.1
Q ss_pred chHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCC
Q 006201 343 WNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDP 422 (657)
Q Consensus 343 ~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~ 422 (657)
.-+|..++-+|+-.|..-|. ..-+.++..+..|+.--+|++|+.+++-|.-.+ .+...|.+..+-..+.+.+ .|.
T Consensus 603 ~HVRyGaA~ALGIaCAGtG~---~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~-t~~~~pkv~~frk~l~kvI-~dK 677 (929)
T KOG2062|consen 603 PHVRYGAAMALGIACAGTGL---KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQ-TEQLCPKVNGFRKQLEKVI-NDK 677 (929)
T ss_pred hhhhhhHHHHHhhhhcCCCc---HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhc-ccccCchHHHHHHHHHHHh-hhh
Confidence 36888888888877765553 333445555667887889999999999887555 3555566666666677766 555
Q ss_pred c--HHHHHHHHHHHH
Q 006201 423 N--NHVKDTTAWTLG 435 (657)
Q Consensus 423 ~--~~vr~~a~~~l~ 435 (657)
| ..++.-|+.+=|
T Consensus 678 hEd~~aK~GAilAqG 692 (929)
T KOG2062|consen 678 HEDGMAKFGAILAQG 692 (929)
T ss_pred hhHHHHHHHHHHHhh
Confidence 4 445555554433
No 182
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.75 E-value=0.66 Score=43.78 Aligned_cols=182 Identities=13% Similarity=0.120 Sum_probs=116.1
Q ss_pred HHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhh
Q 006201 218 DYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEE 297 (657)
Q Consensus 218 ~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~ 297 (657)
+..+.-.+..+.+++|+..-..+..+.+++..+++-+.+.+..++-.+.+.+++..-.+...|+-.+..+...-.
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln----- 161 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLN----- 161 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH-----
Confidence 345555566677889999999999999999999998889999999989999998888888888866555554210
Q ss_pred cCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhc-CCCchhchHHHHHhhh
Q 006201 298 YGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV-GDDIVPLVMPFVEENI 376 (657)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~-~~~~~~~l~~~l~~~l 376 (657)
+-+...+..++-.|+. ... ++.--+|..|..+|..+.... +..+++.+++.+
T Consensus 162 --------------~~i~~~ld~lv~~Ll~---ka~------~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~---- 214 (334)
T KOG2933|consen 162 --------------NSIDQELDDLVTQLLH---KAS------QDNRFVREDAEKALVAMVNHVTPQKLLRKLIPIL---- 214 (334)
T ss_pred --------------HHHHHHHHHHHHHHHh---hhc------ccchHHHHHHHHHHHHHHhccChHHHHHHHHHHH----
Confidence 1111122222322222 111 122347778888888887765 455666666654
Q ss_pred cCcchhhHHHHHHHHHHhhcCCC-CCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 006201 377 TKQEWRQREAATYAFGSILEGPS-PEKLVPLVNIALNFMLTALMQDPNNHVKDTTAW 432 (657)
Q Consensus 377 ~~~~~~~r~aal~~l~~i~~~~~-~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~ 432 (657)
.+.+.++|..+..++.....-.+ .....+++...++.+-... .|.-|.+|.+|-.
T Consensus 215 ~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~~a~~~~~-~d~Lp~~~~~a~~ 270 (334)
T KOG2933|consen 215 QHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLSRAAQEQG-SDKLPELREAARF 270 (334)
T ss_pred hhhchhhhhhhhccccccceeccccchhhHhHHHHHHHHHhhh-cccccccccchhH
Confidence 45566777777777665443221 1222334445566666666 6777777766543
No 183
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=95.74 E-value=2.4 Score=42.05 Aligned_cols=346 Identities=14% Similarity=0.132 Sum_probs=166.4
Q ss_pred HhcCCCChHHHHHHHHHHHHHHhhhcCC------CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccc--cchh
Q 006201 99 KTLSSPAHDARSTASQVVAKVAGIELPH------KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDA--VEQD 170 (657)
Q Consensus 99 ~~l~~~~~~vr~~aa~~l~~i~~~~~~~------~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~--l~~~ 170 (657)
.++...+..++.-.+.|++.+++..... ..-.+++.-+.+..+|++..+.....++|+.+|..-.... +-+-
T Consensus 49 ~~i~~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~l 128 (604)
T KOG4500|consen 49 SGIMTASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNL 128 (604)
T ss_pred cceeeccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhc
Confidence 3444556678888888888777644221 1225677778888888888899999999999987642110 0000
Q ss_pred hHhHHHHHHHhccCCCC-C-CHHHHHHHHHHHHHHHhhchhhcCChhhHH-----HHHHHHHhhc--cCCcHHHHHHHHH
Q 006201 171 HVNKILTAVVQGMNASE-S-NNDVRLAATRALYNALGFAQANFSNDMERD-----YIMRVVCEAT--LSPEVKIRQAAFE 241 (657)
Q Consensus 171 ~~~~l~~~l~~~l~~~~-~-~~~vr~~al~~l~~~~~~~~~~~~~~~~~~-----~il~~l~~~~--~~~~~~~~~~~~~ 241 (657)
.-.+++--++....+.| + +.+.-..+...+.+++. ..+..+. .+++.+.... ..++.+..+.+.-
T Consensus 129 gGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l------~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~ 202 (604)
T KOG4500|consen 129 GGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL------DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLA 202 (604)
T ss_pred CCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC------CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHh
Confidence 01111111222222112 1 12223333334444321 1111222 2344332222 1233333333333
Q ss_pred HHHHHHHHHHHhhHHhHH--HHHHHHHHHHh-cCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhh
Q 006201 242 CLVAISSTYYEKLAPYIQ--DIFNITAKAVR-EDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHAL 318 (657)
Q Consensus 242 ~l~~l~~~~~~~~~~~~~--~l~~~~~~~~~-~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 318 (657)
.+..+++...+.+.++.. .+.....+.+. ..+++++..+++.+...++..- -...+.+.
T Consensus 203 ~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~----------------Vkl~la~~-- 264 (604)
T KOG4500|consen 203 PFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDL----------------VKLSLAQN-- 264 (604)
T ss_pred ccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcc----------------eeeehhhc--
Confidence 333333322222222211 12222222222 3456677778887766665310 01112221
Q ss_pred hhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhh-----cCCCc------hhchHHHHHhhhcCcchhhHHHH
Q 006201 319 PVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVART-----VGDDI------VPLVMPFVEENITKQEWRQREAA 387 (657)
Q Consensus 319 ~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~-----~~~~~------~~~l~~~l~~~l~~~~~~~r~aa 387 (657)
.++..+++.+....++.+ ...+...+.+.++. .|++- -|.++.++..++.+.+....-++
T Consensus 265 -gl~e~~~~lv~~~k~~t~--------k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g 335 (604)
T KOG4500|consen 265 -GLLEDSIDLVRNMKDFTK--------KTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMG 335 (604)
T ss_pred -chHHHHHHHHHhcccccc--------hHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHH
Confidence 122222222222111111 01112222222221 13322 35688889999999988888999
Q ss_pred HHHHHHhhcCCCCCcchHHH-HHHHHHHHHHhc----CCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHH
Q 006201 388 TYAFGSILEGPSPEKLVPLV-NIALNFMLTALM----QDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISV 462 (657)
Q Consensus 388 l~~l~~i~~~~~~~~~~~~~-~~i~~~l~~~l~----~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~ 462 (657)
..++|.++..- +....++ ..++..++..+. .|.+.+++.+++.++..+.--..+ ...-.-..+.+.
T Consensus 336 ~LaigNfaR~D--~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~n-------ka~~~~aGvtea 406 (604)
T KOG4500|consen 336 SLAIGNFARRD--DICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSN-------KAHFAPAGVTEA 406 (604)
T ss_pred HHHHHhhhccc--hHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCc-------hhhccccchHHH
Confidence 99999998752 2222222 234455555442 477889999999999877653321 111111334556
Q ss_pred HHHHccc-chHHHHHHHHHHHHHHh
Q 006201 463 LLQSMKD-VPNVAEKACGALYFLAQ 486 (657)
Q Consensus 463 l~~~l~d-~~~v~~~a~~al~~l~~ 486 (657)
++..+.- .|+|...-..++..+.+
T Consensus 407 IL~~lk~~~ppv~fkllgTlrM~~d 431 (604)
T KOG4500|consen 407 ILLQLKLASPPVTFKLLGTLRMIRD 431 (604)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHh
Confidence 6666653 56776666666665544
No 184
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=95.69 E-value=0.21 Score=49.63 Aligned_cols=84 Identities=13% Similarity=0.241 Sum_probs=59.9
Q ss_pred HHHhhhhhHHHHHHHHhhhhcCccc-cCCCcchHhhhHHHHHHHHHhhcCC---CchhchHHHHHhhhcCcc--hhhHHH
Q 006201 313 FIKHALPVLVPLLLETLLKQEEDQD-QDEGAWNIAMAGGTCLGLVARTVGD---DIVPLVMPFVEENITKQE--WRQREA 386 (657)
Q Consensus 313 ~~~~~l~~l~~~l~~~l~~~~~d~~-~d~~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~~~l~~~~--~~~r~a 386 (657)
++.+++..++|.++.++....-... +.++.|.+|..|+.++..++..++. .+.|.+...+...+.|+. ....++
T Consensus 251 ~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YG 330 (343)
T cd08050 251 HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYG 330 (343)
T ss_pred chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhH
Confidence 4677778888888877643321111 1345699999999999999999874 345667766666666654 455899
Q ss_pred HHHHHHHhhc
Q 006201 387 ATYAFGSILE 396 (657)
Q Consensus 387 al~~l~~i~~ 396 (657)
|+..|+.++.
T Consensus 331 Ai~GL~~lG~ 340 (343)
T cd08050 331 AIVGLSALGP 340 (343)
T ss_pred HHHHHHHhCc
Confidence 9999998864
No 185
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=95.65 E-value=0.065 Score=52.73 Aligned_cols=151 Identities=10% Similarity=0.064 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHH-hhccccchhhhHHH-HHHHHHHHHHHhcccccHHHHHHH
Q 006201 472 NVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLT-VTHREDAGESRLRT-AAYETLNEVVRCSTDETAPMVMQL 549 (657)
Q Consensus 472 ~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~-~l~~~~~~~~~~~~-~~~~al~~l~~~~~~~~~~~~~~l 549 (657)
.++......+.++++... ........+++.|+. ++.++..+.+..|+ +++.++++++...++...+++..+
T Consensus 42 ~iKkeIL~Li~t~i~~~~-------~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I 114 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAE-------DPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQI 114 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S--------HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHH
T ss_pred HHHHHHHHHHHHHHhccC-------CHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHH
Confidence 344555666667766532 223344555555554 33333322233342 789999999999999888888888
Q ss_pred HHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhh----HHHHHHHHHHHHHHcccCCcch
Q 006201 550 VPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFM----QYADQMMGLFLRVFAIRSATAH 625 (657)
Q Consensus 550 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~----~~~~~i~~~l~~~l~~~~~~v~ 625 (657)
+..+++..-..+.... ++ .++.|....+.+..+...+-.. +. +....+++.++..++..++++.
T Consensus 115 ~~~vf~~Tl~MI~~d~---~~---yPe~r~~ff~LL~~i~~~~f~~------l~~lp~~~f~~~idsi~wg~kh~~~~I~ 182 (319)
T PF08767_consen 115 LEAVFECTLPMINKDF---EE---YPEHRVNFFKLLRAINEHCFPA------LLQLPPEQFKLVIDSIVWGFKHTNREIS 182 (319)
T ss_dssp HHHHHHHHHHHHSSTS---SS---SHHHHHHHHHHHHHHHHHHTHH------HHHS-HHHHHHHHHHHHHHHTSSSHHHH
T ss_pred HHHHHHHHHHHHHhhh---hh---ChHHHHHHHHHHHHHHHHhHHH------HHcCCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 8888877776664211 11 1245556667777776654332 22 2567889999999999889999
Q ss_pred hhHHHHHHHHHHHhch
Q 006201 626 EEAMLAIGALAYATGL 641 (657)
Q Consensus 626 ~~~~~~l~~l~~~~g~ 641 (657)
+.++.++..++..+..
T Consensus 183 ~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 183 ETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999886654
No 186
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.64 E-value=3.1 Score=42.68 Aligned_cols=227 Identities=13% Similarity=0.188 Sum_probs=109.7
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhc-----CCChhHHHHHHHHHHHHhhhccccccchh
Q 006201 96 FILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIH-----QLPPHTKQATLETLGYICEEVSSDAVEQD 170 (657)
Q Consensus 96 ~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~-----~~~~~~~~~~l~~l~~i~~~~~~~~l~~~ 170 (657)
.|+..+.++++.=|..+..++-.+.... + +.-+.+...+.+.+. +....-....|.+++.++..+ ..-+..+
T Consensus 137 ~Ll~l~~S~D~rER~~lk~~l~~iy~k~-~-~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf-~~plk~e 213 (409)
T PF01603_consen 137 KLLELFDSPDPRERDYLKTILHRIYGKF-P-NLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGF-AVPLKEE 213 (409)
T ss_dssp HHHHTTTSSTHHHHHHHHHHHHHHHHH--T-TTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT---SS--HH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHh-h-hhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhcc-CCCCcHH
Confidence 4555666666666666666665555443 2 122222222222221 122233344555666665554 2112122
Q ss_pred hHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHH
Q 006201 171 HVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTY 250 (657)
Q Consensus 171 ~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 250 (657)
+..-+...++...+. ..-......-..|+..++. . ++.....++..++...-..+..-....+.-+..+++..
T Consensus 214 h~~fl~~vllPLh~~-~~~~~y~~~L~~~~~~f~~---k---dp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~ 286 (409)
T PF01603_consen 214 HKQFLRKVLLPLHKS-PHLSSYHQQLSYCVVQFLE---K---DPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVL 286 (409)
T ss_dssp HHHHHHHTTGGGGGS-TGGGGTHHHHHHHHHHHHH---H----GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHH---h---CchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhc
Confidence 322233333333331 1111112222333333222 1 11122345666666553334433334555666666543
Q ss_pred -HHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHh
Q 006201 251 -YEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETL 329 (657)
Q Consensus 251 -~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l 329 (657)
+..+......++..+..++.+..-.|...|+.+|..-.- ...+...-..++|.++..+
T Consensus 287 ~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~---------------------~~li~~~~~~i~p~i~~~L 345 (409)
T PF01603_consen 287 PPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYF---------------------LSLISQNSRVILPIIFPAL 345 (409)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHH---------------------HHHHHCTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHH---------------------HHHHHhChHHHHHHHHHHH
Confidence 345667777888888889999999999999988865311 1223333345666666655
Q ss_pred hhhcCccccCCCcc--hHhhhHHHHHHHHHhh
Q 006201 330 LKQEEDQDQDEGAW--NIAMAGGTCLGLVART 359 (657)
Q Consensus 330 ~~~~~d~~~d~~~~--~~r~~a~~~L~~l~~~ 359 (657)
...- ..-| ++|..|..++..+.+.
T Consensus 346 ~~~~------~~HWn~~Vr~~a~~vl~~l~~~ 371 (409)
T PF01603_consen 346 YRNS------KNHWNQTVRNLAQNVLKILMEM 371 (409)
T ss_dssp SSTT------SS-SSTTHHHHHHHHHHHHHTT
T ss_pred HHHH------HHHhhHHHHHHHHHHHHHHHHh
Confidence 3211 1235 6888888888887764
No 187
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=95.63 E-value=3 Score=42.30 Aligned_cols=220 Identities=13% Similarity=0.113 Sum_probs=128.0
Q ss_pred ChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhhhcCCCCC
Q 006201 52 PVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPA--HDARSTASQVVAKVAGIELPHKQW 129 (657)
Q Consensus 52 ~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~--~~vr~~aa~~l~~i~~~~~~~~~~ 129 (657)
+.++-..|..+|..++.... .-..++.+....+....+..+.+++ ..+.+. .+..+....++....
T Consensus 59 ~~~L~~qALkll~~~l~~~~---------i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~---~l~~ls~Q~f~~~~~ 126 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPE---------IVSTLSDDFASFIIDHSIESLQNPNSPKSICTH---YLWCLSDQKFSPKIM 126 (372)
T ss_pred chHHHHHHHHHHHHHHccHH---------HHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHcCCCCCccc
Confidence 45666677778777765321 1235788888878888888887664 344333 344445555542221
Q ss_pred -chHHHHHHHh---hcC--CChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHH
Q 006201 130 -PELIGALLSN---IHQ--LPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNA 203 (657)
Q Consensus 130 -~~l~~~l~~~---l~~--~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~ 203 (657)
.+....++.. +.+ +...+....+.++..++..+ |+.+ ..+...-+|.++..+- +....+|..|+.++..+
T Consensus 127 ~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~-p~~M-~~~~~~W~~~l~~~l~--~~~k~ir~~a~~l~~~~ 202 (372)
T PF12231_consen 127 TSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQF-PQQM-IKHADIWFPILFPDLL--SSAKDIRTKAISLLLEA 202 (372)
T ss_pred chhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHh--hcchHHHHHHHHHHHHH
Confidence 2333333333 332 34466677888999999888 7766 5666777777777776 56778888777766554
Q ss_pred Hhhchh----------hc----CChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHH---hhHHhHHHHHHHHH
Q 006201 204 LGFAQA----------NF----SNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYE---KLAPYIQDIFNITA 266 (657)
Q Consensus 204 ~~~~~~----------~~----~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~---~~~~~~~~l~~~~~ 266 (657)
...+.. .+ ........+.+.+...+.+.+. ...+.+.+..++.-.+. .-.+++...+...-
T Consensus 203 ~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~--~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e 280 (372)
T PF12231_consen 203 KKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDE--YKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPE 280 (372)
T ss_pred HHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCC--cchHHHHHHHHHHHhCCchhhccHhHhHHHHHHH
Confidence 322211 01 0001112233333344433111 11233333333322221 12356777888777
Q ss_pred HHHhcCChHHHHHHHHHHHHHhH
Q 006201 267 KAVREDEEPVALQAIEFWSSVCD 289 (657)
Q Consensus 267 ~~~~~~~~~v~~~a~~~~~~l~~ 289 (657)
.++.+.++.+|..|+..|..+..
T Consensus 281 ~cFn~~d~~~k~~A~~aW~~liy 303 (372)
T PF12231_consen 281 KCFNSSDPQVKIQAFKAWRRLIY 303 (372)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHH
Confidence 88899999999999999999886
No 188
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=95.59 E-value=0.31 Score=47.19 Aligned_cols=146 Identities=14% Similarity=0.164 Sum_probs=98.6
Q ss_pred CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccc---cchhh-HhHHHHHHHhccC------CCCCCHHHHHHH
Q 006201 127 KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDA---VEQDH-VNKILTAVVQGMN------ASESNNDVRLAA 196 (657)
Q Consensus 127 ~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~---l~~~~-~~~l~~~l~~~l~------~~~~~~~vr~~a 196 (657)
..|+-++|.++..+.|.++.+|..|+.+|..++..+.... +.+.. .+-+.+.+..++. ..+.+..+-..+
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~a 194 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAA 194 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHH
Confidence 5899999999999999999999999999999999875444 32222 2222333333333 224566777888
Q ss_pred HHHHHHHHhhchh--hcCChhhH-HHHHHHHHhhcc----CCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHH
Q 006201 197 TRALYNALGFAQA--NFSNDMER-DYIMRVVCEATL----SPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAV 269 (657)
Q Consensus 197 l~~l~~~~~~~~~--~~~~~~~~-~~il~~l~~~~~----~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~ 269 (657)
..|+..++..... .-...... +.+.+.++..+. .+.++++...++.+..++..-+-....|++.+++.+.+.+
T Consensus 195 y~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l 274 (282)
T PF10521_consen 195 YPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQIL 274 (282)
T ss_pred HHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 8888888654211 11111111 223333333221 2358889999999999999888888899999999988877
Q ss_pred hcC
Q 006201 270 RED 272 (657)
Q Consensus 270 ~~~ 272 (657)
++.
T Consensus 275 ~np 277 (282)
T PF10521_consen 275 ENP 277 (282)
T ss_pred cCC
Confidence 654
No 189
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.27 Score=51.69 Aligned_cols=123 Identities=23% Similarity=0.201 Sum_probs=86.1
Q ss_pred chHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcC
Q 006201 367 LVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTL 446 (657)
Q Consensus 367 ~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~ 446 (657)
.+-..+.-.++|.+-.+|.+|+.+||-+.-.- ++ .+|.++..|..+-||.||+.+..+||-.|.-.+
T Consensus 555 air~lLh~aVsD~nDDVrRaAVialGFVl~~d-p~--------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG---- 621 (929)
T KOG2062|consen 555 AIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD-PE--------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTG---- 621 (929)
T ss_pred hHHHhhcccccccchHHHHHHHHHheeeEecC-hh--------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCC----
Confidence 34444445567888899999999999877432 22 234455555466789999999999997776543
Q ss_pred CCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhcccc
Q 006201 447 ETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHRED 517 (657)
Q Consensus 447 ~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~ 517 (657)
....+..|-....| ..=||..|+.++..++-.. ...+.|-...+.+.+.+.+.+..
T Consensus 622 ---------~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~------t~~~~pkv~~frk~l~kvI~dKh 678 (929)
T KOG2062|consen 622 ---------LKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQ------TEQLCPKVNGFRKQLEKVINDKH 678 (929)
T ss_pred ---------cHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhc------ccccCchHHHHHHHHHHHhhhhh
Confidence 23344444444445 4669999999999877653 34578899999999999987654
No 190
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.57 E-value=0.62 Score=43.45 Aligned_cols=116 Identities=11% Similarity=0.182 Sum_probs=64.5
Q ss_pred CCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHcccc-------hHHHHHHHHHHHHHHhhccCCC
Q 006201 420 QDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDV-------PNVAEKACGALYFLAQGFEDAI 492 (657)
Q Consensus 420 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~-------~~v~~~a~~al~~l~~~~~~~~ 492 (657)
...+...|.+|+.++ ....-+++++|.++..+.+. ..+-.........++++
T Consensus 208 dEs~~~~r~aAl~sL----------------r~dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N----- 266 (450)
T COG5095 208 DESDEQTRDAALESL----------------RNDSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKN----- 266 (450)
T ss_pred HHHHHHHHHHHHHHh----------------ccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcC-----
Confidence 445677888888655 23456788888888887641 11222222233333333
Q ss_pred CCCCCCchhHHHHHHHHHHhhcccc--chhh-----hHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Q 006201 493 SPSSPLTPFFQEIVQALLTVTHRED--AGES-----RLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMEL 557 (657)
Q Consensus 493 ~~~~~l~~~~~~i~~~L~~~l~~~~--~~~~-----~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l 557 (657)
..-.+.||+.+++|.++.++-... +.+. .+|..+...++-+.+..+......-+.+...+++.|
T Consensus 267 -~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKaf 337 (450)
T COG5095 267 -KYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAF 337 (450)
T ss_pred -CceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHH
Confidence 123567999999999998874311 1012 256666666666666555432222233344444444
No 191
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=95.57 E-value=2.8 Score=41.57 Aligned_cols=203 Identities=9% Similarity=0.074 Sum_probs=105.5
Q ss_pred ccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 006201 36 PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQV 115 (657)
Q Consensus 36 ~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~ 115 (657)
+.+...++.++... ..++.......++-..+....+- ...+.......+...-...++.|.+.+..+-...+.+
T Consensus 64 ~~~v~~fi~LlS~~-~kdd~v~yvL~li~DmLs~d~sr-----~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~I 137 (442)
T KOG2759|consen 64 AQYVKTFINLLSHI-DKDDTVQYVLTLIDDMLSEDRSR-----VDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRI 137 (442)
T ss_pred HHHHHHHHHHhchh-hhHHHHHHHHHHHHHHHhhCchH-----HHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHH
Confidence 46666677777753 34444555566665555432210 0111111112222223456778888888888889999
Q ss_pred HHHHHhhhc---CCCCCchHHHHHHHhhcC-CChhHHHHHHHHHHHHhhhcc--ccccchhhHhHHHHHHHhccCCCCCC
Q 006201 116 VAKVAGIEL---PHKQWPELIGALLSNIHQ-LPPHTKQATLETLGYICEEVS--SDAVEQDHVNKILTAVVQGMNASESN 189 (657)
Q Consensus 116 l~~i~~~~~---~~~~~~~l~~~l~~~l~~-~~~~~~~~~l~~l~~i~~~~~--~~~l~~~~~~~l~~~l~~~l~~~~~~ 189 (657)
++.++..-. +.....-....|...+++ .++..+..+.+||..++..-. ..........-+++.+. ++ ..+
T Consensus 138 ls~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~---s~-~~~ 213 (442)
T KOG2759|consen 138 LSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILA---ST-KCG 213 (442)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHh---cc-Ccc
Confidence 998887641 112334455666677766 677888899999999877421 11111122233444443 22 556
Q ss_pred HHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccC-CcHHHHHHHHHHHHHHHHHH
Q 006201 190 NDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLS-PEVKIRQAAFECLVAISSTY 250 (657)
Q Consensus 190 ~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~ 250 (657)
..++...+-|+--+. |-+... ....+-.+++.+...++. -.++|-.-++..+..+++..
T Consensus 214 ~QlQYqsifciWlLt-Fn~~~a-e~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~ 273 (442)
T KOG2759|consen 214 FQLQYQSIFCIWLLT-FNPHAA-EKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKG 273 (442)
T ss_pred hhHHHHHHHHHHHhh-cCHHHH-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 677766666554322 111111 001112345555554432 23445555556666665554
No 192
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=95.52 E-value=2 Score=39.69 Aligned_cols=75 Identities=16% Similarity=0.199 Sum_probs=51.8
Q ss_pred hHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcC--cchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCC
Q 006201 344 NIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITK--QEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQD 421 (657)
Q Consensus 344 ~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~--~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d 421 (657)
-+|..++-+|+.+ -.|.-+|.+.+.+.+ .++.+|+-|+.|||.|++. ..++.|...+ +|
T Consensus 202 lfrhEvAfVfGQl-------~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e-----------~~~~vL~e~~-~D 262 (289)
T KOG0567|consen 202 LFRHEVAFVFGQL-------QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE-----------DCVEVLKEYL-GD 262 (289)
T ss_pred HHHHHHHHHHhhc-------cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-----------HHHHHHHHHc-CC
Confidence 3455444444443 345555666665554 3579999999999999963 2356677788 99
Q ss_pred CcHHHHHHHHHHHHHH
Q 006201 422 PNNHVKDTTAWTLGRM 437 (657)
Q Consensus 422 ~~~~vr~~a~~~l~~l 437 (657)
+.+.||..+..++.-+
T Consensus 263 ~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 263 EERVVRESCEVALDML 278 (289)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 9999999988877543
No 193
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.24 Score=50.31 Aligned_cols=122 Identities=20% Similarity=0.145 Sum_probs=85.0
Q ss_pred hHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCC
Q 006201 368 VMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLE 447 (657)
Q Consensus 368 l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 447 (657)
+-..+.-.++|.+-.+|.||+.++|-++-. + ...++..+..|..+.|+.||.....+||-.+..-+
T Consensus 553 v~~lLh~avsD~nDDVrRAAViAlGfvc~~---D------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G----- 618 (926)
T COG5116 553 VSTLLHYAVSDGNDDVRRAAVIALGFVCCD---D------RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTG----- 618 (926)
T ss_pred HhhhheeecccCchHHHHHHHHheeeeEec---C------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCc-----
Confidence 333344446777789999999999987732 1 12234444555366789999999999997776543
Q ss_pred CccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhcccc
Q 006201 448 TPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHRED 517 (657)
Q Consensus 448 ~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~ 517 (657)
. +..+..|-....| +.-||..|+.++..+...+. ..+.|.+..|...+.+++.+..
T Consensus 619 -----~---~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n------~~Lnp~v~~I~k~f~~vI~~Kh 675 (926)
T COG5116 619 -----D---KVATDILEALMYDTNDFVRQSAMIAVGMILMQCN------PELNPNVKRIIKKFNRVIVDKH 675 (926)
T ss_pred -----c---HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcC------cccChhHHHHHHHHHHHHhhhh
Confidence 1 2233333333445 57799999999999887654 4588999999999999887543
No 194
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=95.38 E-value=0.21 Score=39.93 Aligned_cols=64 Identities=14% Similarity=0.032 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHcccCCcchhhHHHHHHHHHHHhc-hhhhhcccc
Q 006201 578 QGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATG-LCHHRRCCW 649 (657)
Q Consensus 578 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~~~~l~~l~~~~g-~~f~~y~~~ 649 (657)
|..++..++.+++..|+. ..++.++|+..+...+..+ ++++.++.+|..+++.++ ++..|+++.
T Consensus 32 k~~~l~si~~lI~~~~~~------i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~ 96 (107)
T PF08064_consen 32 KKRALRSIEELIKLGGSH------ISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQ 96 (107)
T ss_pred HHHHHHHHHHHHHHhHHH------HHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 446899999999955555 8899999999998888864 899999999999999988 677776654
No 195
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=95.38 E-value=1.3 Score=46.94 Aligned_cols=146 Identities=14% Similarity=0.233 Sum_probs=93.1
Q ss_pred CchHHHHHHHhhcC-CChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhc
Q 006201 129 WPELIGALLSNIHQ-LPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFA 207 (657)
Q Consensus 129 ~~~l~~~l~~~l~~-~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~ 207 (657)
-+.++|.|...+.. .+.......++=+..|.++..++ ...+.++|.+...++ +.+..++..+++.+..+.+.+
T Consensus 347 ~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e----~~~~~IlplL~~S~~--~~~~~iQ~~~L~~lptv~e~i 420 (700)
T KOG2137|consen 347 GPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPE----EVKEKILPLLYRSLE--DSDVQIQELALQILPTVAESI 420 (700)
T ss_pred hhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChH----HHHHHHHHHHHHHhc--CcchhhHHHHHHhhhHHHHhc
Confidence 35666777776653 33334333444444455555332 346788999999998 788999999999999988776
Q ss_pred hhhcCChhhHHHHHHHHHh-hccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006201 208 QANFSNDMERDYIMRVVCE-ATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSS 286 (657)
Q Consensus 208 ~~~~~~~~~~~~il~~l~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~ 286 (657)
+-.+ .+..+++.+.. ++...+..++..++.|+..+++.... ..+-+.+..+.+.++..++.+....+.....
T Consensus 421 D~~~----vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~---~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~ 493 (700)
T KOG2137|consen 421 DVPF----VKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDK---AAVLDELLPILKCIKTRDPAIVMGFLRIYEA 493 (700)
T ss_pred cHHH----HHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 5332 22456666544 33567889999999999999854332 1223444445566666777776665554433
Q ss_pred H
Q 006201 287 V 287 (657)
Q Consensus 287 l 287 (657)
+
T Consensus 494 l 494 (700)
T KOG2137|consen 494 L 494 (700)
T ss_pred H
Confidence 3
No 196
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=95.33 E-value=3.1 Score=40.69 Aligned_cols=237 Identities=10% Similarity=0.136 Sum_probs=125.1
Q ss_pred CChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCc
Q 006201 51 KPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWP 130 (657)
Q Consensus 51 ~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~ 130 (657)
.....+++|++++.++++ +|+.+..+.. +.-+.+..+.+-.||++|-.-|-.++..+ ..+
T Consensus 36 ~~~k~k~lasq~ip~~fk------------~fp~la~~a~----da~~d~~ed~d~~ir~qaik~lp~fc~~d----~~~ 95 (460)
T KOG2213|consen 36 GTSKEKRLASQFIPRFFK------------HFPSLADEAI----DAQLDLCEDDDVGIRRQAIKGLPLFCKGD----ALS 95 (460)
T ss_pred cchHHHHHHHHHHHHHHh------------hCchhhhHHH----HhhhccccccchhhHHHHHhccchhccCc----hhh
Confidence 356888999999998775 4555554333 23445666778899999998888888764 334
Q ss_pred hHHHHHHHhhcC------------CChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHH
Q 006201 131 ELIGALLSNIHQ------------LPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATR 198 (657)
Q Consensus 131 ~l~~~l~~~l~~------------~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~ 198 (657)
...+.+.++++. .+..+|+.++..+..=+-.+.++.+..+.-..++..+.+.|. |...+--...++
T Consensus 96 rv~d~l~qLLnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~--dVtgeef~lfm~ 173 (460)
T KOG2213|consen 96 RVNDVLVQLLNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALE--DVTGEEFTLFMD 173 (460)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHH--hccHHHHHHHHH
Confidence 444444444432 256777777776665444343555644444556667777777 444443333444
Q ss_pred HHHHHHhhchhhcCChhhHHHHHHHH---Hh--hccCCcHHHHHHHHHHHHHHHHHHH-----HhhHHhH-HHHHHHHHH
Q 006201 199 ALYNALGFAQANFSNDMERDYIMRVV---CE--ATLSPEVKIRQAAFECLVAISSTYY-----EKLAPYI-QDIFNITAK 267 (657)
Q Consensus 199 ~l~~~~~~~~~~~~~~~~~~~il~~l---~~--~~~~~~~~~~~~~~~~l~~l~~~~~-----~~~~~~~-~~l~~~~~~ 267 (657)
.|.++-.+ +.. ..+.....+.+.. .. .+...|.++....+.|+..-+--+. ..+..|+ .++++.
T Consensus 174 ~L~~lk~~-~~k-~~~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~--- 248 (460)
T KOG2213|consen 174 ILASLKSL-QTK-AGEARLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPH--- 248 (460)
T ss_pred HHHhhhcc-cCC-CCHHHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhccc---
Confidence 44443221 111 1111111222222 11 1344667777777777766443221 1122222 234443
Q ss_pred HHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhh
Q 006201 268 AVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQ 332 (657)
Q Consensus 268 ~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~ 332 (657)
+.+..--..-++++-.+++-.+.. ...-.+..++.|+..|...|...
T Consensus 249 ---~fdkl~e~rkL~lLK~lAEMss~t---------------taq~a~q~Lpsi~elLk~yMpa~ 295 (460)
T KOG2213|consen 249 ---HFDKLTEERKLDLLKALAEMSSYT---------------TAQAARQMLPSIVELLKEYMPAP 295 (460)
T ss_pred ---ccccchHHHHHHHHHHHHHhCccc---------------hHHHHHHHHHHHHHHHHHhcccC
Confidence 112111122356666677642211 12345667777888887777654
No 197
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.29 E-value=1.5 Score=51.66 Aligned_cols=134 Identities=16% Similarity=0.147 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc--chHHHHHHHHHHHHHH
Q 006201 408 NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--VPNVAEKACGALYFLA 485 (657)
Q Consensus 408 ~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~~l~ 485 (657)
...+..+...+ ..++|..|-++..++++++...+ ...+...+.+.++..+.+ ++..|..-..+++.+-
T Consensus 875 ~~~~~l~~~sl-~~~~p~~rc~~~ea~arLaq~v~---------~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lh 944 (2067)
T KOG1822|consen 875 SSALTLIVNSL-INPNPKLRCAAAEALARLAQVVG---------SAPFVASLAQNSFDKLASARDPITRTGHSLALGCLH 944 (2067)
T ss_pred HHHHHHHhhhh-ccCChHHHHHHHHHHHHHHHhcc---------ccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 33455666777 88999999999999999999875 367888999999998886 4555666666677666
Q ss_pred hhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Q 006201 486 QGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELH 558 (657)
Q Consensus 486 ~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~ 558 (657)
+..+.. .-..++..-+..++....+.. ...++.+.+.++.-++...++.+.-|+...+..+.+.+-
T Consensus 945 kyvgs~-----~s~qhl~t~v~illal~~Ds~--~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLl 1010 (2067)
T KOG1822|consen 945 KYVGSI-----GSGQHLNTSVSILLALATDST--SPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLL 1010 (2067)
T ss_pred HhccCC-----CCchhcccHHHHHHHHhhcCC--CchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcC
Confidence 654321 112455666677777777665 468999999999999999998887788877777666654
No 198
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=95.21 E-value=4.9 Score=42.21 Aligned_cols=288 Identities=12% Similarity=0.097 Sum_probs=145.3
Q ss_pred hHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHH
Q 006201 146 HTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVC 225 (657)
Q Consensus 146 ~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~ 225 (657)
..|..++.-+...+..++ -..+..+.......+.. +...+.|.++++.+..++..-... ....|..++..+.
T Consensus 5 ~~R~~a~~~l~~~i~~~~-----~~~i~~iW~~~~DLi~~-~~p~e~R~~~~~ll~~~i~~~~~~--~~~~R~~fF~~I~ 76 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYP-----LSSIEEIWYAAKDLIDP-NQPSEARRAALELLIACIKRQDSS--SGLMRAEFFRDIS 76 (464)
T ss_pred HHHHHHHHHHHHHHHhCC-----chHHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHHHHHccccc--cHHHHHHHHHHHh
Confidence 345566666666655552 24456666666555553 566789999999999998753211 2234566777665
Q ss_pred hhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhc---------------------------CChHHHH
Q 006201 226 EATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVRE---------------------------DEEPVAL 278 (657)
Q Consensus 226 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~---------------------------~~~~v~~ 278 (657)
....+++...+..++..|.. .++.+..+..++.+++..-+.. .++..-.
T Consensus 77 ~~~~~~d~~~~l~aL~~LT~----~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (464)
T PF11864_consen 77 DPSNDDDFDLRLEALIALTD----NGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLS 152 (464)
T ss_pred cCCCchhHHHHHHHHHHHHc----CCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHH
Confidence 44444556666666666654 3333322222233322221110 0111112
Q ss_pred HHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHh
Q 006201 279 QAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVAR 358 (657)
Q Consensus 279 ~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~ 358 (657)
..+.++..+..... ..+-...+..++..++....... .+ -++ ..+...++.+..
T Consensus 153 ~ll~~l~nviKfn~------------------~~l~e~~i~~lv~~i~~iC~~Ts-~~------~di-~~~L~vldaii~ 206 (464)
T PF11864_consen 153 DLLQFLVNVIKFNF------------------NYLDEDEISSLVDQICTICKSTS-SE------DDI-EACLSVLDAIIT 206 (464)
T ss_pred HHHHHHHHHHhcCC------------------CCCCHHHHHHHHHHHHHHHhccC-cH------HHH-HHHHHHHHHHHH
Confidence 22333333332110 00111222233333333211111 00 022 367788888876
Q ss_pred h--cCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHh-----cCCCcHHHHHHHH
Q 006201 359 T--VGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTAL-----MQDPNNHVKDTTA 431 (657)
Q Consensus 359 ~--~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l-----~~d~~~~vr~~a~ 431 (657)
. +|...++.++..+....... .....+-.++..++.+-. - ...+..+...+ ...++..+-.-|+
T Consensus 207 y~~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~---g----~~~i~~L~~iL~~~~~~~~~~~~~lRGAv 277 (464)
T PF11864_consen 207 YGDIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHL---G----HSAIRTLCDILRSPDPQNKRDINVLRGAV 277 (464)
T ss_pred cCcCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCcc---H----HHHHHHHHHHHcccCccccccHHHHhhHH
Confidence 3 46777888888887654433 334445557777776421 1 22223333333 0224456656677
Q ss_pred HHHHHHHhhhccCcCCCccCCcccHH--HHHHHHHHHccc-chHHHHHHHHHHHHHH
Q 006201 432 WTLGRMFEFLHGSTLETPIINQGNCQ--QIISVLLQSMKD-VPNVAEKACGALYFLA 485 (657)
Q Consensus 432 ~~l~~l~~~~~~~~~~~~~~~~~~~~--~il~~l~~~l~d-~~~v~~~a~~al~~l~ 485 (657)
..++.+.-..++. ....--+. .+++.+..+++. ++.|-.....++.+++
T Consensus 278 ~~l~~ll~~~~~~-----~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 278 FFLRMLLWGSGEQ-----GYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHhccccC-----CcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 7777765544211 01111233 489999999984 5666666666777766
No 199
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.19 E-value=0.76 Score=46.95 Aligned_cols=155 Identities=17% Similarity=0.212 Sum_probs=97.5
Q ss_pred hHhhhHHHHHHHHHhhcC-CCchhchHHHHHhhhcCc----chhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHh
Q 006201 344 NIAMAGGTCLGLVARTVG-DDIVPLVMPFVEENITKQ----EWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTAL 418 (657)
Q Consensus 344 ~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l~~~----~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l 418 (657)
..|.. +|..|..-.| ..++|.+..+|.+.+.-. +-..-.-.+....++.+.. .-.+++|+.+++|.++.++
T Consensus 222 ~~r~e---AL~sL~TDsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np-~i~lepYlh~L~PSvlTCv 297 (576)
T KOG2549|consen 222 PLRQE---ALQSLETDSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNP-NIFLEPYLHQLVPSVLTCV 297 (576)
T ss_pred HHHHH---HHHhhccCccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCC-ccchhhHHHHHhhHHHHhh
Confidence 34554 4444455444 345677777776654322 2333333445566777764 3567899999999999876
Q ss_pred c---------CCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHcccc---hHHHHHHHHHHHHHHh
Q 006201 419 M---------QDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDV---PNVAEKACGALYFLAQ 486 (657)
Q Consensus 419 ~---------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~---~~v~~~a~~al~~l~~ 486 (657)
. .|.|+.+|.-|+.++..++..+.+ .....-..+...+.+.+.|+ ......|...|..|-.
T Consensus 298 Vsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~-------~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~ 370 (576)
T KOG2549|consen 298 VSKNLCLRPELDNHWALRDFAARLLAQICKNFST-------LYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELGH 370 (576)
T ss_pred hhhhccCCccccchHHHHHHHHHHHHHHHHhhhh-------HHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhh
Confidence 2 367899999999999999998863 22335567788888888874 2344455555555543
Q ss_pred hccCCCCCCCCCchhHHHHHHHHHHhhc
Q 006201 487 GFEDAISPSSPLTPFFQEIVQALLTVTH 514 (657)
Q Consensus 487 ~~~~~~~~~~~l~~~~~~i~~~L~~~l~ 514 (657)
.. -...+.|.+......+...+.
T Consensus 371 ~~-----I~~~ilp~L~~~~~~l~~~l~ 393 (576)
T KOG2549|consen 371 EV-----IRTVILPNLKEYNERLQSVLD 393 (576)
T ss_pred hh-----hhheeccchHHHHHHhhhhcc
Confidence 21 134556666666666655554
No 200
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=95.19 E-value=0.78 Score=47.84 Aligned_cols=144 Identities=10% Similarity=0.049 Sum_probs=101.7
Q ss_pred CChHHHHHHHHHHHHHHhhhc---CCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHH
Q 006201 104 PAHDARSTASQVVAKVAGIEL---PHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVV 180 (657)
Q Consensus 104 ~~~~vr~~aa~~l~~i~~~~~---~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~ 180 (657)
.+...+.+++.++-.+++... ..-.-.+...-+++.+.+++..+...++.++..++-++++-.- .-.....+..+.
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~ks-kfl~~ngId~l~ 467 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKS-KFLRNNGIDILE 467 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHH-HHHHcCcHHHHH
Confidence 456888899999888877532 1124567888888888999888888888888888777732110 111234455556
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHH
Q 006201 181 QGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTY 250 (657)
Q Consensus 181 ~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 250 (657)
..+. +.+..+|..++..|.+++-..++.+.....++...+.+..+..+++++|.+.++..|..+.-..
T Consensus 468 s~~~--~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 468 SMLT--DPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred HHhc--CCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 5666 7889999999999999774433333322233455677778889999999999999999887654
No 201
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=94.95 E-value=4.2 Score=44.81 Aligned_cols=106 Identities=19% Similarity=0.165 Sum_probs=58.1
Q ss_pred HhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCc---chhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHh-cC
Q 006201 345 IAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQ---EWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTAL-MQ 420 (657)
Q Consensus 345 ~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~---~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l-~~ 420 (657)
-+..+..+|+.++. |..++.+...+.+. .-.+|-+|+.+|..++..+ ++ .+.+.+++.+ +.
T Consensus 506 ~~~~~LkaLgN~g~-------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-~~-------~v~~~l~~I~~n~ 570 (618)
T PF01347_consen 506 EKIVYLKALGNLGH-------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-PE-------KVREILLPIFMNT 570 (618)
T ss_dssp HHHHHHHHHHHHT--------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HH-------HHHHHHHHHHH-T
T ss_pred HHHHHHHHhhccCC-------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-cH-------HHHHHHHHHhcCC
Confidence 35566677776653 44455555555444 4688999999999887665 22 2233344433 13
Q ss_pred CCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHcc-c-chHHHHHHHHHH
Q 006201 421 DPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK-D-VPNVAEKACGAL 481 (657)
Q Consensus 421 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-d-~~~v~~~a~~al 481 (657)
..++.||-+|+..+-+ .-+. ..++..+...+. + +..|+....+.|
T Consensus 571 ~e~~EvRiaA~~~lm~---~~P~-------------~~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 571 TEDPEVRIAAYLILMR---CNPS-------------PSVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp TS-HHHHHHHHHHHHH---T----------------HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHh---cCCC-------------HHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 4678899999866632 2121 344455555555 3 466766555544
No 202
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=94.94 E-value=3.6 Score=43.58 Aligned_cols=216 Identities=12% Similarity=0.144 Sum_probs=126.4
Q ss_pred CCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHHHHHH-hcC------CCChHHHHHHHHHHHHHHhh
Q 006201 50 EKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILK-TLS------SPAHDARSTASQVVAKVAGI 122 (657)
Q Consensus 50 ~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~-~l~------~~~~~vr~~aa~~l~~i~~~ 122 (657)
....++--.|-.+||+.-.. |. +++....+....+. ++. -.++.+|..+-..|.+=...
T Consensus 248 d~~~~V~~~ae~~LKr~~~~------------~e--d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A 313 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVS------------LE--DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA 313 (501)
T ss_pred CCcchHHHHHHHHHhhcCCC------------CC--CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH
Confidence 34667778888888885431 22 23333333333331 101 12467776665555542222
Q ss_pred hcCCCCCchHHHHHHHhhcCC--ChhHHHHHHHHH---HHHhhhccccccchhhHhHHHHHHHhccC------CCCCCHH
Q 006201 123 ELPHKQWPELIGALLSNIHQL--PPHTKQATLETL---GYICEEVSSDAVEQDHVNKILTAVVQGMN------ASESNND 191 (657)
Q Consensus 123 ~~~~~~~~~l~~~l~~~l~~~--~~~~~~~~l~~l---~~i~~~~~~~~l~~~~~~~l~~~l~~~l~------~~~~~~~ 191 (657)
. ...|..+..+...+.+. +...|..++..+ ..++..+.+..+ ......|...+...+. +...+..
T Consensus 314 a---~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l-~~l~~~i~~~g~p~~~~~~~~~~~~~~~~ 389 (501)
T PF13001_consen 314 A---TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQIL-KLLRPVILSQGWPLIQDSSSQSNSSEDIE 389 (501)
T ss_pred H---hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHH-HHHHHHHHhcCccccccccccCCCcccHH
Confidence 1 35678888888888877 567777888888 777666643333 2222223333333331 1135678
Q ss_pred HHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhH-H--hHHHHHHHHH-H
Q 006201 192 VRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLA-P--YIQDIFNITA-K 267 (657)
Q Consensus 192 vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~--~~~~l~~~~~-~ 267 (657)
.|..+-++++.+..-.+..+..+ -.++..++..+.++.+++|.++-++|..++..+...-. . .....+..++ .
T Consensus 390 lR~~aYe~lG~L~~~~p~l~~~d---~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~ 466 (501)
T PF13001_consen 390 LRSLAYETLGLLAKRAPSLFSKD---LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLS 466 (501)
T ss_pred HHHHHHHHHHHHHccCccccccc---HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHh
Confidence 89999999999988766655433 35777777777888999999999999999988765433 1 1112222222 2
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 006201 268 AVREDEEPVALQAIEFWSS 286 (657)
Q Consensus 268 ~~~~~~~~v~~~a~~~~~~ 286 (657)
...+.....|..|+.+...
T Consensus 467 ~~~~~~~~~R~~avk~an~ 485 (501)
T PF13001_consen 467 YIQSEVRSCRYAAVKYANA 485 (501)
T ss_pred hccchhHHHHHHHHHHHHH
Confidence 2333444566666654333
No 203
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=94.94 E-value=14 Score=46.10 Aligned_cols=441 Identities=16% Similarity=0.197 Sum_probs=216.4
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcC------CCC--CchHHHHHHHh-hcCCChhHHHHHHHHHHHHhhhc
Q 006201 92 QIKSFILKTLSSPAHDARSTASQVVAKVAGIELP------HKQ--WPELIGALLSN-IHQLPPHTKQATLETLGYICEEV 162 (657)
Q Consensus 92 ~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~------~~~--~~~l~~~l~~~-l~~~~~~~~~~~l~~l~~i~~~~ 162 (657)
.++..+...+...++.+|..++.....+...... ... ...++..+..+ +.++++.+|...+..+. +.+
T Consensus 481 ~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~ 557 (2341)
T KOG0891|consen 481 FVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERF 557 (2341)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cch
Confidence 4444555566677899999998887777766521 001 12223333332 23456666555544443 222
Q ss_pred cccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHH
Q 006201 163 SSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFEC 242 (657)
Q Consensus 163 ~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~ 242 (657)
.+... + +.++-..+..+. +..-.++.++...++++..+-+. +..+..+...+.....+-.+.-..+...+..-
T Consensus 558 ~~~la-Q---~~~lr~~~~al~--~~~l~~~~~~~~~ig~l~~~~~a-~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~ 630 (2341)
T KOG0891|consen 558 DAQLA-Q---PDLLRLLFIALH--DENFAIQELATVIIGRLSSYNPA-YVLPSLRKTLLELLTELEFSGMARTKEESAKL 630 (2341)
T ss_pred hhhhc-C---chhHHHHHHHhh--hhhhhhHHhHHhhccccccccHH-HHhHHHHHHHHHHhchhhhcchHHhHHHHHHH
Confidence 12211 1 223333555556 66777788888877765442221 00011111122222111112222333334444
Q ss_pred HHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHH
Q 006201 243 LVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLV 322 (657)
Q Consensus 243 l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 322 (657)
+..++...+..+.+|+..++..+.....+.+..+...+.+....+|.... ...+.....++
T Consensus 631 ~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g-------------------~~~~~~~~~~~ 691 (2341)
T KOG0891|consen 631 LCELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGG-------------------EEMVKWVDELF 691 (2341)
T ss_pred hhHHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhcc-------------------chhhhccchHH
Confidence 55555556677778888877777777777777776777777677765321 01111222233
Q ss_pred HHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcC-----CCchhchHHHHHhhhcCc-chhhHHHHHHHHHHhhc
Q 006201 323 PLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVG-----DDIVPLVMPFVEENITKQ-EWRQREAATYAFGSILE 396 (657)
Q Consensus 323 ~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~-----~~~~~~l~~~l~~~l~~~-~~~~r~aal~~l~~i~~ 396 (657)
+.+.+.+.+. +.-..|.++..++..+....| ..-.|.++..+.+.+... .-..|.+++..+|..+.
T Consensus 692 ~~~~~~l~~~--------s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~ 763 (2341)
T KOG0891|consen 692 SLIIKMLQDQ--------SSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGA 763 (2341)
T ss_pred HHHHHHHHHh--------hhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcc
Confidence 3333333311 112456678888888876543 233455665555444322 23567778887773332
Q ss_pred CCCCCcchHHHHHHHHHH--HHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccH-HHHHHHHHHHcccc--h
Q 006201 397 GPSPEKLVPLVNIALNFM--LTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNC-QQIISVLLQSMKDV--P 471 (657)
Q Consensus 397 ~~~~~~~~~~~~~i~~~l--~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~-~~il~~l~~~l~d~--~ 471 (657)
..++........ .+.. .++...-......-.+...+ . ..+. -..+..+...+.|. .
T Consensus 764 ------~d~~~~~~~~~~~~~~~~-~~~~k~~~~~~~~~~~~~~~-----------~-~e~~p~v~I~~l~~~l~d~~~~ 824 (2341)
T KOG0891|consen 764 ------LDPYKHKVTEGTSASKIS-SEQIKSDIDISLLESGVNPS-----------N-DEYYPAVTIHALMGILKDPSLS 824 (2341)
T ss_pred ------cchhHHHHHhhhhhHhhh-hccccccchHHHHHhhhhhh-----------h-hhhhhHHHHHHHhhhhhhhhhH
Confidence 122222222221 2222 11111100111000111111 1 1111 12222444444442 1
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHH
Q 006201 472 NVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVP 551 (657)
Q Consensus 472 ~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~ 551 (657)
.--.....+...++...+ .....+++.+++.++....... .+.++..+.-+...+...+.+..+|...+..
T Consensus 825 ~~l~~~~~a~~~i~~~~~------~~~~l~l~qv~~~~~~~~r~~~---~~~~~f~~~q~~~~~~~~~~h~~~~~~~i~~ 895 (2341)
T KOG0891|consen 825 IHHTAVAQAIMHIFQSLG------LKCVLFLDQVIPTLIDVMRSCP---PNLREFYFQQLTSLVAIVRQHIRPYMESIFT 895 (2341)
T ss_pred HHHHHhhhchhHHHHhhc------cchhhhHHHHHHHHHHHHHhcC---cchhHHHHHhhhhhhhccchhHhhhhhhHHH
Confidence 122334455555555543 4567899999998888776333 3444444444444444444444444333332
Q ss_pred HHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHH
Q 006201 552 LIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVF 617 (657)
Q Consensus 552 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l 617 (657)
.+...+.. +. .+...+...+..+..+++.+ |..|.+..+...+..+
T Consensus 896 ~i~~~~~~----------~~----~l~~~~~~l~~~i~~~l~~~------f~~~l~~~~~~~l~~~ 941 (2341)
T KOG0891|consen 896 LIKDFWPP----------DT----SLQITIISLIEDIAVALGGE------FKKYLPELLPTMLTVL 941 (2341)
T ss_pred HHHhhhhh----------HH----HHHHHHHHHHHHHHHHHHhH------HHHhhhhhccchheee
Confidence 22222221 11 23444577778888899998 9999999888887777
No 204
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=94.91 E-value=1.2 Score=43.12 Aligned_cols=153 Identities=12% Similarity=0.112 Sum_probs=112.1
Q ss_pred HHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHH
Q 006201 479 GALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDE-TAPMVMQLVPLIMMEL 557 (657)
Q Consensus 479 ~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~-~~~~~~~l~~~l~~~l 557 (657)
.+|..+.+.+... .......|+-..+-..|.++++-.- ..-++..++++...+.+..|.+ +...+.-..|.++..+
T Consensus 30 s~L~kL~k~lq~~-~~~~~~IP~k~~v~krLaqCL~P~L--PsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~ 106 (307)
T PF04118_consen 30 SFLGKLLKALQNS-NNQFPYIPHKLQVSKRLAQCLNPAL--PSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLF 106 (307)
T ss_pred HHHHHHHHHHhcc-CCCCceeCcHHHHHHHHHHhcCCCC--ChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHH
Confidence 4444444444310 1244556777788889999997543 4678889999999999999964 3444444555555555
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHcccCCcchhhHHHHHHHHHH
Q 006201 558 HQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAY 637 (657)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~~~~l~~l~~ 637 (657)
.... ..+|...++.+....-.+|.. ..|.+.+++..++..+.++.++.-+.++..+..+..
T Consensus 107 ~~as-------------i~Vkp~lL~i~e~~~lpL~~~------L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~ 167 (307)
T PF04118_consen 107 SYAS-------------IQVKPQLLDIYEKYYLPLGPA------LRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKE 167 (307)
T ss_pred HHHH-------------HhhHHHHHHHHHHHhcCccHH------HHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHH
Confidence 4321 146777888998887799996 999999999999999999889999999999999999
Q ss_pred Hhchhhhhcccccccc
Q 006201 638 ATGLCHHRRCCWGLMQ 653 (657)
Q Consensus 638 ~~g~~f~~y~~~~~~~ 653 (657)
.+|.++.=-+-|..+-
T Consensus 168 ~v~~~~F~~~lwl~ii 183 (307)
T PF04118_consen 168 AVGDKYFWQCLWLCII 183 (307)
T ss_pred hcChhHHHHHHHHHHh
Confidence 9998755445665543
No 205
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.88 E-value=0.14 Score=50.57 Aligned_cols=208 Identities=12% Similarity=0.106 Sum_probs=99.8
Q ss_pred CcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHHHHHHhcCCCChHHHHHHH
Q 006201 34 NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTAS 113 (657)
Q Consensus 34 ~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa 113 (657)
+.+.+...++.++..-+.++++.+....++-..+..... ..+ .+...........-..+++.+.+++..+...++
T Consensus 52 ~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~-~~~----~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~ 126 (312)
T PF03224_consen 52 DGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPS-RVE----LFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAA 126 (312)
T ss_dssp ----------HHHHHH---HHHHHHHHHHHHHHHH-SSS-SHH----HHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHH
T ss_pred chhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHH-HHH----HHHHhcccccchhHHHHHHHhcCCCHHHHHHHH
Confidence 345566556666654335788888888888887764321 111 111111111111456677788888999999999
Q ss_pred HHHHHHHhhhcCCCCCc---hHHHHHHHhhcC----CChhHHHHHHHHHHHHhhhcc-ccccchhhHhHHHHHHHhcc--
Q 006201 114 QVVAKVAGIELPHKQWP---ELIGALLSNIHQ----LPPHTKQATLETLGYICEEVS-SDAVEQDHVNKILTAVVQGM-- 183 (657)
Q Consensus 114 ~~l~~i~~~~~~~~~~~---~l~~~l~~~l~~----~~~~~~~~~l~~l~~i~~~~~-~~~l~~~~~~~l~~~l~~~l-- 183 (657)
.+++.++..... ..-. +.++.+++.+.+ ++...+..++.+|..+++.-. ...+ .-...++.+...+
T Consensus 127 ~iLt~Ll~~~~~-~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f---~~~~~v~~l~~iL~~ 202 (312)
T PF03224_consen 127 FILTSLLSQGPK-RSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVF---WKSNGVSPLFDILRK 202 (312)
T ss_dssp HHHHHHHTSTTT---HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHH---HTHHHHHHHHHHHH-
T ss_pred HHHHHHHHcCCc-cccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHH---HhcCcHHHHHHHHHh
Confidence 999999988633 2333 677777777665 344566889999999876421 0111 0133444444444
Q ss_pred ---CCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhcc-CCcHHHHHHHHHHHHHHHHHHHH
Q 006201 184 ---NASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATL-SPEVKIRQAAFECLVAISSTYYE 252 (657)
Q Consensus 184 ---~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~ 252 (657)
.+...+..+...++-|+--+ .|-++.. .......+++.+...++ ...+++-.-++.++..+++..++
T Consensus 203 ~~~~~~~~~~Ql~Y~~ll~lWlL-SF~~~~~-~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~ 273 (312)
T PF03224_consen 203 QATNSNSSGIQLQYQALLCLWLL-SFEPEIA-EELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPK 273 (312)
T ss_dssp --------HHHHHHHHHHHHHHH-TTSHHHH-HHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSST
T ss_pred hcccCCCCchhHHHHHHHHHHHH-hcCHHHH-HHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHH
Confidence 21133444555555544322 1211110 00111125565555553 34567777777777777765544
No 206
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=94.78 E-value=3.4 Score=38.26 Aligned_cols=262 Identities=16% Similarity=0.210 Sum_probs=137.0
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 006201 40 LSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKV 119 (657)
Q Consensus 40 ~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i 119 (657)
..+.++|.+.+.+..-|+-|...|++..... . ...+-+...+++...+..++.+++..
T Consensus 6 ~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~------------------~----i~~i~ka~~d~s~llkhe~ay~LgQ~ 63 (289)
T KOG0567|consen 6 ETIGNILVNKSQPLQNRFRALFNLRNLLGPA------------------A----IKAITKAFIDDSALLKHELAYVLGQM 63 (289)
T ss_pred HHHHHHHcCccHHHHHHHHHHHhhhccCChH------------------H----HHHHHHhcccchhhhccchhhhhhhh
Confidence 3456777776778888888888888855421 1 23445566666667777777776543
Q ss_pred HhhhcCCCCCchHHHHHHHhhcCC--ChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHH
Q 006201 120 AGIELPHKQWPELIGALLSNIHQL--PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAAT 197 (657)
Q Consensus 120 ~~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al 197 (657)
. ..+-+|.+...+.+. .+.+|..|-.+|+.+.. +. +.+.+.+..+ |+-.+|+..+.
T Consensus 64 ~--------~~~Av~~l~~vl~desq~pmvRhEAaealga~~~---~~---------~~~~l~k~~~--dp~~~v~ETc~ 121 (289)
T KOG0567|consen 64 Q--------DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD---PE---------SLEILTKYIK--DPCKEVRETCE 121 (289)
T ss_pred c--------cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc---hh---------hHHHHHHHhc--CCccccchHHH
Confidence 2 245678888887765 46788899999988752 11 1233333334 67777777654
Q ss_pred HHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHH-HHHHHHHhhHHh-----H-----HHHHHHHH
Q 006201 198 RALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVA-ISSTYYEKLAPY-----I-----QDIFNITA 266 (657)
Q Consensus 198 ~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~-----~-----~~l~~~~~ 266 (657)
-++..+ .|....-. ......+.+ .++.+......+.-+.. +.+.....+..| + ..-+..+.
T Consensus 122 lAi~rl-e~~~~~~~-~~~~~p~~S------vdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~ 193 (289)
T KOG0567|consen 122 LAIKRL-EWKDIIDK-IANSSPYIS------VDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALI 193 (289)
T ss_pred HHHHHH-HHhhcccc-ccccCcccc------CCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHH
Confidence 444442 22211100 000001111 11111100011111111 111111111111 1 11222223
Q ss_pred HHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHh
Q 006201 267 KAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIA 346 (657)
Q Consensus 267 ~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r 346 (657)
..+.++..-+|..+.-+++.+.. +.-+|.+.+.|.+..| .--+|
T Consensus 194 ~~l~~~SalfrhEvAfVfGQl~s-----------------------------~~ai~~L~k~L~d~~E-------~pMVR 237 (289)
T KOG0567|consen 194 DGLADDSALFRHEVAFVFGQLQS-----------------------------PAAIPSLIKVLLDETE-------HPMVR 237 (289)
T ss_pred HhcccchHHHHHHHHHHHhhccc-----------------------------hhhhHHHHHHHHhhhc-------chHHH
Confidence 33333333344443333333221 1124555555543222 23689
Q ss_pred hhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhc
Q 006201 347 MAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILE 396 (657)
Q Consensus 347 ~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~ 396 (657)
..|+.+|+.++. +..++.|.+++.|++.-+|+.+..+|...--
T Consensus 238 hEaAeALGaIa~-------e~~~~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 238 HEAAEALGAIAD-------EDCVEVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred HHHHHHHHhhcC-------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 989999988775 4556778888899999999999999887654
No 207
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=94.77 E-value=8.2 Score=42.59 Aligned_cols=181 Identities=10% Similarity=0.112 Sum_probs=101.6
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcc------------c
Q 006201 97 ILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVS------------S 164 (657)
Q Consensus 97 ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~------------~ 164 (657)
+...-.+....+|..+...++.+...... ..--.++..+++...++.-.+++++-..+..=...++ +
T Consensus 477 ~~~rClDkaaavR~~al~s~tk~l~l~~~-~~~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~l~~~~ 555 (1529)
T KOG0413|consen 477 VYMRCLDKAAAVRLHALNSLTKILQLQSH-REAFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDLLLDEQ 555 (1529)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcc-cchHHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhhcCcch
Confidence 33334466689999999999998887643 2233444444444444333344433333221111110 0
Q ss_pred ccc--------c---hhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcH
Q 006201 165 DAV--------E---QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEV 233 (657)
Q Consensus 165 ~~l--------~---~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~ 233 (657)
+.+ + ...-..++..+...++. |....++++|+..+.+...+....... ...+-+|..+..++-.
T Consensus 556 ~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~-d~k~~v~k~a~~~l~S~l~~cD~~~~f----e~~L~iLq~lCrd~~v 630 (1529)
T KOG0413|consen 556 QIIQDFKLKLMNKGETRVEKDVVYMIVRRLST-DDKAPVKKAACSLLKSYLSYCDEASKF----EVVLSILQMLCRDRMV 630 (1529)
T ss_pred hhhhhcchhhhhccccHHHHHHHHHHHHHhcc-CCCcccchhhHHHHHHHHhccchhhcc----hhHHHHHHHHhcCcch
Confidence 000 0 00123445566666664 556688999999999987765422111 2335555555567788
Q ss_pred HHHHHHHHHHHHHHHHHHHhhH---HhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 006201 234 KIRQAAFECLVAISSTYYEKLA---PYIQDIFNITAKAVREDEEPVALQAIEFWSSV 287 (657)
Q Consensus 234 ~~~~~~~~~l~~l~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l 287 (657)
.+|+.++..|+.+....|..+. .++..+++ .+.+.+..+...|+.++..+
T Consensus 631 svrk~~~~Sltel~~~~pr~~~~~~~wl~~li~----~~~d~es~v~e~a~~~i~k~ 683 (1529)
T KOG0413|consen 631 SVRKTGADSLTELMLRDPRLFSLSSKWLHTLIS----MLNDTESDVTEHARKLIMKV 683 (1529)
T ss_pred HHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHH----HHhccHHHHHHHHHHHHHHH
Confidence 9999999999999887776552 23333333 34455555666666655443
No 208
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.77 E-value=11 Score=44.03 Aligned_cols=366 Identities=13% Similarity=0.125 Sum_probs=175.8
Q ss_pred HHHHHHH--hcCCCChHHHHHHHHHHHHHHhhhcCCCC-----CchHHHHHHHhhc---CC-Chh--HHHHHHHHHHHHh
Q 006201 93 IKSFILK--TLSSPAHDARSTASQVVAKVAGIELPHKQ-----WPELIGALLSNIH---QL-PPH--TKQATLETLGYIC 159 (657)
Q Consensus 93 i~~~ll~--~l~~~~~~vr~~aa~~l~~i~~~~~~~~~-----~~~l~~~l~~~l~---~~-~~~--~~~~~l~~l~~i~ 159 (657)
++..|++ .|.+++..||--.|-|++.|.+.+-|+.- ..+++..++..+. +. ++. .+...+..+..+.
T Consensus 49 l~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k 128 (1266)
T KOG1525|consen 49 LADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVK 128 (1266)
T ss_pred HHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhH
Confidence 3334443 47788999999999999999999877532 2344444444432 21 221 1222222222222
Q ss_pred --hhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHH
Q 006201 160 --EEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQ 237 (657)
Q Consensus 160 --~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~ 237 (657)
-.+..+-- ++.+..++..+...++ ++.+.--..-+..+..++.- ++ .....++.+++.-+-.+..+...
T Consensus 129 ~~l~~~l~d~-~e~~~~~f~~f~d~~~--~~~~~~v~~~~~i~~~li~e----~d--~v~~e~L~~ll~~lv~~~~~~~~ 199 (1266)
T KOG1525|consen 129 FCLLMLLEDC-QELVHELFRTFFDLAR--KGHPKKVFNMLDIAIMLITE----ED--TVQSELLDVLLENLVKPGRDTIK 199 (1266)
T ss_pred HHheeeccch-HHHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHh----hc--cchHHHHHHHHHHhccCCCCccH
Confidence 00100001 2344555666666655 23222222222222222221 11 11134555554433223344444
Q ss_pred HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhh
Q 006201 238 AAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHA 317 (657)
Q Consensus 238 ~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (657)
.+...=..++..++..+.+.+..++.-.+..-...--..+.-.-+.+..+ +...-..
T Consensus 200 ~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L-----------------------~~~~p~l 256 (1266)
T KOG1525|consen 200 EADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILEL-----------------------WRIAPQL 256 (1266)
T ss_pred HHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHH-----------------------HHhhHHH
Confidence 55555555555555555444444333222111100000111111111111 1222334
Q ss_pred hhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCC---CchhchHHHHHhhhcCcchhhHHHHHHHHHHh
Q 006201 318 LPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD---DIVPLVMPFVEENITKQEWRQREAATYAFGSI 394 (657)
Q Consensus 318 l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i 394 (657)
+..++|.+...+.... -..|..|...++.+....+. +-.+.++......+.|....+|.+++.....+
T Consensus 257 l~~vip~l~~eL~se~---------~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~ 327 (1266)
T KOG1525|consen 257 LLAVIPQLEFELLSEQ---------EEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQC 327 (1266)
T ss_pred HHHHHHHHHHHHhcch---------HHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHH
Confidence 5556777766665311 26788888888888764432 33455555555667788889999999887776
Q ss_pred hcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHH
Q 006201 395 LEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNV 473 (657)
Q Consensus 395 ~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v 473 (657)
.-.. +..... ..+...+.. .|.++.+|.+...++......- ..-.+.+.++..+.+.+.| ..+|
T Consensus 328 l~~~-~~~~~~--~~~~~~l~~---~~~D~~~rir~~v~i~~~~v~~---------~~l~~~~~ll~~~~eR~rDKk~~V 392 (1266)
T KOG1525|consen 328 LLNN-PSIAKA--STILLALRE---RDLDEDVRVRTQVVIVACDVMK---------FKLVYIPLLLKLVAERLRDKKIKV 392 (1266)
T ss_pred HhcC-chhhhH--HHHHHHHHh---hcCChhhhheeeEEEEEeehhH---------hhhhhhHHHHHHHHHHHhhhhHHH
Confidence 5432 222111 111222222 3444445544332222111110 1123444477777777777 6899
Q ss_pred HHHHHHHHHHHHhh--ccCCCCCCCCCchhHHHHHHHHHHhhcc
Q 006201 474 AEKACGALYFLAQG--FEDAISPSSPLTPFFQEIVQALLTVTHR 515 (657)
Q Consensus 474 ~~~a~~al~~l~~~--~~~~~~~~~~l~~~~~~i~~~L~~~l~~ 515 (657)
|..|...|..+-+. +... .....+.+-+..|-..|+.++..
T Consensus 393 R~~Am~~LaqlYk~~~~~~~-~~~k~~t~~~swIp~kLL~~~y~ 435 (1266)
T KOG1525|consen 393 RKQAMNGLAQLYKNVYCLRS-AGGKEITPPFSWIPDKLLHLYYE 435 (1266)
T ss_pred HHHHHHHHHHHHHHHHHhhc-cCcccccccccccchhHHhhHhh
Confidence 99999999988774 1111 22344445445444455555443
No 209
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=94.71 E-value=0.13 Score=54.01 Aligned_cols=186 Identities=15% Similarity=0.114 Sum_probs=123.0
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCCh-HHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 006201 38 FLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDS-SVKAQIKSFILKTLSSPAHDARSTASQVV 116 (657)
Q Consensus 38 ~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~-~~~~~i~~~ll~~l~~~~~~vr~~aa~~l 116 (657)
++..|++++.. .+..+|..-+..+-+++. .+++ .....|.+.+..++.+.++.+|.+...++
T Consensus 331 i~p~l~kLF~~--~Dr~iR~~LL~~i~~~i~---------------~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm 393 (690)
T KOG1243|consen 331 IIPVLLKLFKS--PDRQIRLLLLQYIEKYID---------------HLTKQILNDQIFPHVALGFLDTNATLREQTLKSM 393 (690)
T ss_pred hhhhHHHHhcC--cchHHHHHHHHhHHHHhh---------------hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHH
Confidence 56666666664 477777776666666554 2443 34557888888888888889998888888
Q ss_pred HHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHH
Q 006201 117 AKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAA 196 (657)
Q Consensus 117 ~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~a 196 (657)
..++....+.+.=.+++..+-..-.|....+|-....|++.|.....+.. .-..+...+...++ |+-..-|.++
T Consensus 394 ~~La~kL~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~----R~~vL~~aftralk--dpf~paR~a~ 467 (690)
T KOG1243|consen 394 AVLAPKLSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV----RKRVLASAFTRALK--DPFVPARKAG 467 (690)
T ss_pred HHHHhhhchhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhh----hccccchhhhhhhc--CCCCCchhhh
Confidence 88888775532335666666555555666777777778877766542211 11223334555666 6666778888
Q ss_pred HHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHH
Q 006201 197 TRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTY 250 (657)
Q Consensus 197 l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 250 (657)
+..+.....+.+ .......+++.+....-+++..+|..+.+.+.......
T Consensus 468 v~~l~at~~~~~----~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 468 VLALAATQEYFD----QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKL 517 (690)
T ss_pred hHHHhhcccccc----hhhhhhhccccccccccCcccchhhHHHHHHHHHHhhh
Confidence 888887666543 22233578888887777888888888888777665544
No 210
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=94.66 E-value=4 Score=41.10 Aligned_cols=222 Identities=15% Similarity=0.109 Sum_probs=131.2
Q ss_pred HhcCCChHHHHHHHHHHHHHHhcCcccHHHHHH---------HHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhh
Q 006201 11 NAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLA---------GELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (657)
Q Consensus 11 ~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~---------~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (657)
.++++++++|..|..-+.-+... +.++..+. .-+..++.....|..|..+.|.++..+..
T Consensus 33 ~lL~~~~~vraa~yRilRy~i~d--~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~--------- 101 (371)
T PF14664_consen 33 MLLSDSKEVRAAGYRILRYLISD--EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG--------- 101 (371)
T ss_pred HHCCCcHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC---------
Confidence 56787899999999988766554 33333332 22333345678899999999998875321
Q ss_pred cccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC-CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhh
Q 006201 82 WLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH-KQWPELIGALLSNIHQLPPHTKQATLETLGYICE 160 (657)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~ 160 (657)
..+.-..+.+.++....++++..|..+-.++..++-.. |. -.+-+-+..+.+.+.++.....+..+.++-.+.+
T Consensus 102 ----~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~-P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd 176 (371)
T PF14664_consen 102 ----PKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLN-PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLD 176 (371)
T ss_pred ----cccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC-HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC
Confidence 11223456667777777888899999999999988876 41 1234445666666666544455566666666655
Q ss_pred hcc-ccccch-hhHhHHHHHHHhcc-CCCCCCH--HHHHHHHHHHHHHHhhchhhc--CChhhHHHHHHHHHhhccCCcH
Q 006201 161 EVS-SDAVEQ-DHVNKILTAVVQGM-NASESNN--DVRLAATRALYNALGFAQANF--SNDMERDYIMRVVCEATLSPEV 233 (657)
Q Consensus 161 ~~~-~~~l~~-~~~~~l~~~l~~~l-~~~~~~~--~vr~~al~~l~~~~~~~~~~~--~~~~~~~~il~~l~~~~~~~~~ 233 (657)
.-. ...+.. -.++.++..+...- .....+. +.-..+.+++..++.-++..+ ..+. ..-++.+...+.-+++
T Consensus 177 ~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~--~~~lksLv~~L~~p~~ 254 (371)
T PF14664_consen 177 SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMND--FRGLKSLVDSLRLPNP 254 (371)
T ss_pred CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCC--chHHHHHHHHHcCCCH
Confidence 321 111201 12344555554331 0001222 233445555555554333322 1111 1456666777777888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006201 234 KIRQAAFECLVAISSTY 250 (657)
Q Consensus 234 ~~~~~~~~~l~~l~~~~ 250 (657)
++|..+++.+..+....
T Consensus 255 ~ir~~Ildll~dllrik 271 (371)
T PF14664_consen 255 EIRKAILDLLFDLLRIK 271 (371)
T ss_pred HHHHHHHHHHHHHHCCC
Confidence 99999999998887643
No 211
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.59 E-value=6.6 Score=40.71 Aligned_cols=115 Identities=10% Similarity=0.099 Sum_probs=71.6
Q ss_pred hHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhch-hhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHH
Q 006201 171 HVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQ-ANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISST 249 (657)
Q Consensus 171 ~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~-~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 249 (657)
.+..++..++.+=+ ++.+-...++.+..++.|.. +..+.......++..+++.+..++..||..+++.+..+...
T Consensus 46 ~flr~vn~IL~~Kk----~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~ 121 (885)
T COG5218 46 EFLRVVNTILACKK----NPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDV 121 (885)
T ss_pred HHHHHHHHhhcccc----CCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHh
Confidence 33444555554433 22223345666667666643 22222333456777888888889999999999999988765
Q ss_pred HHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhH
Q 006201 250 YYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCD 289 (657)
Q Consensus 250 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~ 289 (657)
..+-=......++..+...+-|.++-+|.+|+-.+..+.+
T Consensus 122 v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe 161 (885)
T COG5218 122 VREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQE 161 (885)
T ss_pred cchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Confidence 4331112234555555556667788899999977777664
No 212
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=94.56 E-value=0.44 Score=37.88 Aligned_cols=62 Identities=11% Similarity=0.032 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHcccCCcchhhHHHHHHHHHHHhc-hhhhhcc
Q 006201 578 QGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATG-LCHHRRC 647 (657)
Q Consensus 578 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~~~~l~~l~~~~g-~~f~~y~ 647 (657)
|..++..++.+++..|+. ...+.++|+..+...++. +++++.++.+|..++..+. ++..|.+
T Consensus 32 k~~~i~ai~~lI~~~g~~------i~~a~pQI~acL~saL~~--~eL~~~al~~W~~~i~~L~~~~l~~ll 94 (107)
T smart00802 32 KKRALRSIGFLIKLMGKH------ISSALPQIMACLQSALEI--PELRSLALRCWHVLIKTLKEEELGPLL 94 (107)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 446889999999988877 899999999999999985 5799999999999999987 3444433
No 213
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.54 E-value=0.55 Score=36.23 Aligned_cols=75 Identities=12% Similarity=0.116 Sum_probs=58.3
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhH
Q 006201 176 LTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLA 255 (657)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 255 (657)
+...+..++ |+.+.+|..++..|..++.--. ........++..+...++++++-+..++++++..++..+|+.+.
T Consensus 5 ~~~al~~L~--dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl 79 (92)
T PF10363_consen 5 LQEALSDLN--DPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVL 79 (92)
T ss_pred HHHHHHHcc--CCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHH
Confidence 344555666 7888999999999999876322 12233467889999999999999999999999999998886443
No 214
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.47 E-value=1.3 Score=41.36 Aligned_cols=138 Identities=17% Similarity=0.226 Sum_probs=82.4
Q ss_pred cHHHHHHHHHHHccc--chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHH-HHHHhhccccchhhhHHHHHHHHH
Q 006201 455 NCQQIISVLLQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQ-ALLTVTHREDAGESRLRTAAYETL 531 (657)
Q Consensus 455 ~~~~il~~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~-~L~~~l~~~~~~~~~~~~~~~~al 531 (657)
|++.++.++ .| +...|.+|..++.+=.. -..+.||+-.++. .+.+-+++ -.+..-++...
T Consensus 198 YF~kvisal----~dEs~~~~r~aAl~sLr~dsG--------lhQLvPYFi~f~~eqit~Nl~n-----l~~LtTv~~m~ 260 (450)
T COG5095 198 YFDKVISAL----LDESDEQTRDAALESLRNDSG--------LHQLVPYFIHFFNEQITKNLKN-----LEKLTTVVMMY 260 (450)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHhccCcc--------HHHHHHHHHHHHHHHHHHhhhh-----HHHHHHHHHHH
Confidence 445444444 34 46677777776653110 1234455433322 22222221 22223455555
Q ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHH-HHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHH
Q 006201 532 NEVVRCSTDETAPMVMQLVPLIMMELHQ-TLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMM 610 (657)
Q Consensus 532 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~ 610 (657)
.++.+.-.-...||+.++||.++..+-. .+.+ +++| +.+-++|..+...++.++..++.. +...-+.+.
T Consensus 261 ~sLL~N~~iFvdPY~hqlmPSilTcliakklg~---~p~d-he~~alRd~AA~ll~yV~~~F~~~------YktLkPRvt 330 (450)
T COG5095 261 SSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGN---VPDD-HEHYALRDVAADLLKYVFSNFSSS------YKTLKPRVT 330 (450)
T ss_pred HHHhcCCceeecHHHHHHHHHHHHHHHHHHhcC---CCcc-hhHHHHHHHHHHHHHHHHhhhhHh------hhhhchHHH
Confidence 5666655556789999999999887654 2211 1222 334578999999999999999887 777777888
Q ss_pred HHHHHHHcc
Q 006201 611 GLFLRVFAI 619 (657)
Q Consensus 611 ~~l~~~l~~ 619 (657)
+.+++.+-+
T Consensus 331 rTllKafLD 339 (450)
T COG5095 331 RTLLKAFLD 339 (450)
T ss_pred HHHHHHHHh
Confidence 888877655
No 215
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.32 E-value=0.65 Score=35.83 Aligned_cols=80 Identities=16% Similarity=0.193 Sum_probs=63.5
Q ss_pred HhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCC
Q 006201 373 EENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIIN 452 (657)
Q Consensus 373 ~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 452 (657)
...+.|+..-+|--|+..|+.++...+ .....++.++..++..+ +|+++.|--+|..++..++...+
T Consensus 9 l~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L-~d~DsyVYL~aI~~L~~La~~~p---------- 75 (92)
T PF10363_consen 9 LSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQL-KDEDSYVYLNAIKGLAALADRHP---------- 75 (92)
T ss_pred HHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHc-CCCCchHHHHHHHHHHHHHHHCh----------
Confidence 355678888899999999999998642 23344678889999999 99999999999999999999875
Q ss_pred cccHHHHHHHHHHHccc
Q 006201 453 QGNCQQIISVLLQSMKD 469 (657)
Q Consensus 453 ~~~~~~il~~l~~~l~d 469 (657)
..+++.|++...+
T Consensus 76 ----~~vl~~L~~~y~~ 88 (92)
T PF10363_consen 76 ----DEVLPILLDEYAD 88 (92)
T ss_pred ----HHHHHHHHHHHhC
Confidence 4566666665543
No 216
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.26 E-value=0.71 Score=48.87 Aligned_cols=169 Identities=9% Similarity=0.072 Sum_probs=109.0
Q ss_pred HHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccc
Q 006201 90 KAQIKSFILKTLSS-PAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVE 168 (657)
Q Consensus 90 ~~~i~~~ll~~l~~-~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~ 168 (657)
...+...|...+.. .+..++-.+-+-+..|.+..-++..-..++|.|...+.+.+..+++.++..+..+.+..+.
T Consensus 347 ~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---- 422 (700)
T KOG2137|consen 347 GPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---- 422 (700)
T ss_pred hhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH----
Confidence 33455555555553 3345555566666666766644445678899999999999999999999999999888732
Q ss_pred hhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHH
Q 006201 169 QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISS 248 (657)
Q Consensus 169 ~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~ 248 (657)
...-+.|+|.+.+.... .....++..++-|+..++..+... ...+.++++ ....+..++.+....+.....++-
T Consensus 423 ~~vk~~ilP~l~~l~~~-tt~~~vkvn~L~c~~~l~q~lD~~----~v~d~~lpi-~~~~~~~dp~iv~~~~~i~~~l~~ 496 (700)
T KOG2137|consen 423 PFVKQAILPRLKNLAFK-TTNLYVKVNVLPCLAGLIQRLDKA----AVLDELLPI-LKCIKTRDPAIVMGFLRIYEALAL 496 (700)
T ss_pred HHHHHHHHHHhhcchhc-ccchHHHHHHHHHHHHHHHHHHHH----HhHHHHHHH-HHHhcCCCcHHHHHHHHHHHHHHh
Confidence 23456788888776443 678899999999999988543221 111233333 344556788888887777777665
Q ss_pred HHHHhhHHhHHHHHHHHHHH
Q 006201 249 TYYEKLAPYIQDIFNITAKA 268 (657)
Q Consensus 249 ~~~~~~~~~~~~l~~~~~~~ 268 (657)
..+....-....++|.++..
T Consensus 497 ~~~~g~ev~~~~VlPlli~l 516 (700)
T KOG2137|consen 497 IIYSGVEVMAENVLPLLIPL 516 (700)
T ss_pred hcccceeeehhhhhhhhhhh
Confidence 54432111223455555543
No 217
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=94.20 E-value=3 Score=43.13 Aligned_cols=99 Identities=12% Similarity=0.128 Sum_probs=67.8
Q ss_pred cchHhhhHHHHHHHHHhhcCCCchhchHH-HHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcC
Q 006201 342 AWNIAMAGGTCLGLVARTVGDDIVPLVMP-FVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQ 420 (657)
Q Consensus 342 ~~~~r~~a~~~L~~l~~~~~~~~~~~l~~-~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~ 420 (657)
.++.|..|..+|+.++...+......+.. .+..+++++..-.|..|.+.+...+..+......+..+.+.+.+...| .
T Consensus 100 v~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L-~ 178 (441)
T PF12054_consen 100 VIRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL-E 178 (441)
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH-c
Confidence 36789999999999999998777666665 688899998888899999999887765422211111344555666666 4
Q ss_pred CCc-----------HHHHHHHHHHHHHHHhhh
Q 006201 421 DPN-----------NHVKDTTAWTLGRMFEFL 441 (657)
Q Consensus 421 d~~-----------~~vr~~a~~~l~~l~~~~ 441 (657)
++. .++|..+-..+..|....
T Consensus 179 ~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g 210 (441)
T PF12054_consen 179 NPEPPYYDELVPSLKRLRTECQQLLATFRDVG 210 (441)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 332 356666666666665543
No 218
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.06 E-value=1.2 Score=43.87 Aligned_cols=131 Identities=15% Similarity=0.166 Sum_probs=97.0
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhh
Q 006201 131 ELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQAN 210 (657)
Q Consensus 131 ~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~ 210 (657)
.-+..++..+.-.+..+|..++.-+..+.... +..+ ..+...+++.+...+. |.+..||....+.+..++......
T Consensus 58 ltlkeLl~qlkHhNakvRkdal~glkd~l~s~-p~~l-~~~~~~ll~~~~~~i~--D~~~~vR~~~~qll~~~i~~~~~e 133 (393)
T KOG2149|consen 58 LTLKELLSQLKHHNAKVRKDALNGLKDLLKSH-PAEL-QSHLYALLQKLRELIL--DDDSLVRDALYQLLDSLILPACKE 133 (393)
T ss_pred ccHHHHHhhhcCchHhhhHHHHHHHHHHHHhC-hHHH-HHHHHHHHHHhhhhhc--CccccHHHHHHHHHHHHHhhcchh
Confidence 34455666677779999999999999988875 6666 6778888888888888 788899998888888766543221
Q ss_pred cCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHH
Q 006201 211 FSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITA 266 (657)
Q Consensus 211 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~ 266 (657)
. .......++..+..++..-.+++|.-++..+..++..+|+.+..+...+++.+.
T Consensus 134 ~-~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~ 188 (393)
T KOG2149|consen 134 D-QSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFK 188 (393)
T ss_pred h-hcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 1 112234567777778888889999999999999999997766655544555443
No 219
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=93.95 E-value=8.1 Score=39.19 Aligned_cols=283 Identities=12% Similarity=0.079 Sum_probs=153.4
Q ss_pred ChhHHHHHHHHHHHHhhhcc-ccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHH
Q 006201 144 PPHTKQATLETLGYICEEVS-SDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMR 222 (657)
Q Consensus 144 ~~~~~~~~l~~l~~i~~~~~-~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~ 222 (657)
+......|+++++.+.-... ...+..+...-++......+.++..+..+....+.++..- -++..+........++.
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q--~f~~~~~~~~~~~~l~~ 136 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQ--KFSPKIMTSDRVERLLA 136 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--CCCCcccchhhHHHHHH
Confidence 44667789999998875421 1223223334466666667765456667777777776651 11111211122244555
Q ss_pred HHHhhcc-CCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCC
Q 006201 223 VVCEATL-SPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGD 301 (657)
Q Consensus 223 ~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~ 301 (657)
.+....+ -++..+-...+.++..++..+|..+..+...=++.++..+-+....+|..|+.+.......- .+
T Consensus 137 ~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l----~~---- 208 (372)
T PF12231_consen 137 ALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCL----GP---- 208 (372)
T ss_pred HHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHh----Ch----
Confidence 5554443 35667778899999999999999988888777777777777777778887765433332110 00
Q ss_pred CCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcch
Q 006201 302 FSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEW 381 (657)
Q Consensus 302 ~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~ 381 (657)
...+.+.+... +...- ++ +.+...+.+.+..++.+.+
T Consensus 209 -------------~~~~s~~~~~~---~~~~~-----~~---------------------~~~~~~~~~~L~~mi~~~~- 245 (372)
T PF12231_consen 209 -------------NKELSKSVLED---LQRSL-----EN---------------------GKLIQLYCERLKEMIKSKD- 245 (372)
T ss_pred -------------hHHHHHHHHHH---hcccc-----cc---------------------ccHHHHHHHHHHHHHhCcC-
Confidence 00001111111 11000 00 0122223333444444411
Q ss_pred hhHHHH-HH-HHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHH
Q 006201 382 RQREAA-TY-AFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQI 459 (657)
Q Consensus 382 ~~r~aa-l~-~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~i 459 (657)
..+.+. ++ ++-.+. +...-.-.+++...+.....++ +++++.+|..|..+-..+......+ +...+..+..+
T Consensus 246 ~~~~a~~iW~~~i~LL-~~~~~~~w~~~n~wL~v~e~cF-n~~d~~~k~~A~~aW~~liy~~~~~----~~~~~k~l~lL 319 (372)
T PF12231_consen 246 EYKLAMQIWSVVILLL-GSSRLDSWEHLNEWLKVPEKCF-NSSDPQVKIQAFKAWRRLIYASNPN----ELTSPKRLKLL 319 (372)
T ss_pred CcchHHHHHHHHHHHh-CCchhhccHhHhHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhcCC----ccccHHHHHHH
Confidence 011111 00 011111 1111233467788888888899 9999999999999998888865421 22334555666
Q ss_pred HHHHHHHccc--ch----HHHHHHHHHHHHHH
Q 006201 460 ISVLLQSMKD--VP----NVAEKACGALYFLA 485 (657)
Q Consensus 460 l~~l~~~l~d--~~----~v~~~a~~al~~l~ 485 (657)
+..+...+.. .+ .++..+...++.++
T Consensus 320 ~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 320 CQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred HHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 6666666652 22 55666666555544
No 220
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=93.90 E-value=8 Score=39.00 Aligned_cols=123 Identities=11% Similarity=0.119 Sum_probs=82.6
Q ss_pred CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcc-ccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHh
Q 006201 127 KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVS-SDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALG 205 (657)
Q Consensus 127 ~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~-~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 205 (657)
-.|..+.+.+...+-+++..+|-+|++++..++.... -..+.+-+++. .+...+..+.....=|..|++.+..++.
T Consensus 21 ~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~---~ii~SL~~~~~~~~ER~QALkliR~~l~ 97 (371)
T PF14664_consen 21 LVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDI---FIIRSLDRDNKNDVEREQALKLIRAFLE 97 (371)
T ss_pred hhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCch---hhHhhhcccCCChHHHHHHHHHHHHHHH
Confidence 3788888888876656669999999999998877541 01110111121 2334444322344458899999999887
Q ss_pred hchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhH
Q 006201 206 FAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLA 255 (657)
Q Consensus 206 ~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 255 (657)
+-.. .. .....++..+.....+.+...|..+++++++++-..|+.+.
T Consensus 98 ~~~~-~~--~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~ 144 (371)
T PF14664_consen 98 IKKG-PK--EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVA 144 (371)
T ss_pred hcCC-cc--cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHH
Confidence 6221 00 11245778888888888889999999999999998887654
No 221
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.80 E-value=0.68 Score=47.29 Aligned_cols=146 Identities=14% Similarity=0.182 Sum_probs=96.7
Q ss_pred HHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHHhhhccCcCCCc
Q 006201 371 FVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTA-LMQDPNNHVKDTTAWTLGRMFEFLHGSTLETP 449 (657)
Q Consensus 371 ~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~-l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 449 (657)
+|.+.+.|.+.-.|+++.++++.---|.+. ..++..++.. . +|.+-.||++|.-++|-.+..
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTgn-------~~vv~~lLh~av-sD~nDDVrRAAViAlGfvc~~--------- 582 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTGN-------LGVVSTLLHYAV-SDGNDDVRRAAVIALGFVCCD--------- 582 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCCc-------chhHhhhheeec-ccCchHHHHHHHHheeeeEec---------
Confidence 556677788888999998887764434321 1234445554 5 899999999999888855442
Q ss_pred cCCcccHHHHHHHHHHHccc--chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHH
Q 006201 450 IINQGNCQQIISVLLQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAA 527 (657)
Q Consensus 450 ~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~ 527 (657)
.. ..++..++.|.+ |+-||...+.+|+-+|..-+. ...-.++. .++.+. ..-+|..+
T Consensus 583 --D~----~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~---------~~a~diL~---~L~~D~---~dfVRQ~A 641 (926)
T COG5116 583 --DR----DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD---------KVATDILE---ALMYDT---NDFVRQSA 641 (926)
T ss_pred --Cc----chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc---------HHHHHHHH---HHhhCc---HHHHHHHH
Confidence 12 234445555554 688999999999999876432 23333433 334444 35788899
Q ss_pred HHHHHHHHHhcccccHHHHHHHHHHHH
Q 006201 528 YETLNEVVRCSTDETAPMVMQLVPLIM 554 (657)
Q Consensus 528 ~~al~~l~~~~~~~~~~~~~~l~~~l~ 554 (657)
+-+++-+...+.+...|-+..+...+.
T Consensus 642 mIa~~mIl~Q~n~~Lnp~v~~I~k~f~ 668 (926)
T COG5116 642 MIAVGMILMQCNPELNPNVKRIIKKFN 668 (926)
T ss_pred HHHHHHHHhhcCcccChhHHHHHHHHH
Confidence 999999988888777777665444433
No 222
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=93.55 E-value=5.1 Score=39.54 Aligned_cols=170 Identities=12% Similarity=0.127 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHhhhcc-ccccchhhHhHHHHHHHhccCCCCCCHHHHH-HHHHHHHHHHhhchhhcCChhhHHHHHHHH
Q 006201 147 TKQATLETLGYICEEVS-SDAVEQDHVNKILTAVVQGMNASESNNDVRL-AATRALYNALGFAQANFSNDMERDYIMRVV 224 (657)
Q Consensus 147 ~~~~~l~~l~~i~~~~~-~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~-~al~~l~~~~~~~~~~~~~~~~~~~il~~l 224 (657)
++...++.+...++..+ ++.+...-++.++..++.--+ ...+..|. .++.++..++.-+.+.+.+. ...+++.+
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~--~~~p~~r~~evL~l~~~ii~kl~~~~~~~--v~~I~~~v 118 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQ--NSVPDAREPEVLSLMATIINKLGELIQPQ--VPQILEAV 118 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHH--HS-GGGS-HHHHHHHHHHHHHHGGGCCCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHh--cCCccccChhHHHHHHHHHHHHHHhhhhh--HHHHHHHH
Confidence 45566777777666552 111111222333333333333 23333342 25566666665554443322 13444444
Q ss_pred Hh----hccC---CcHHHHHHHHHHHHHHHHHHHHhhHH----hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHH
Q 006201 225 CE----ATLS---PEVKIRQAAFECLVAISSTYYEKLAP----YIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEID 293 (657)
Q Consensus 225 ~~----~~~~---~~~~~~~~~~~~l~~l~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~ 293 (657)
+. .+.. +-|+.|...++.+..+.+.++..+.. ....+++.+.-.+++.+.++...+++.+..+.+....
T Consensus 119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 33 3322 45899999999999999987665542 3456777777788999999999999888777764322
Q ss_pred hhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhh
Q 006201 294 ILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLK 331 (657)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~ 331 (657)
...+ ....|.+.++-.++..++..+++
T Consensus 199 ~~~~-----------~~~~F~~~y~~~il~~if~vltD 225 (319)
T PF08767_consen 199 TNPE-----------FANQFYQQYYLDILQDIFSVLTD 225 (319)
T ss_dssp -SHH-----------HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCHH-----------HHHHHHHHHHHHHHHHHHHHHHC
Confidence 0000 12356666666677777776663
No 223
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.42 E-value=11 Score=44.08 Aligned_cols=103 Identities=10% Similarity=0.141 Sum_probs=75.3
Q ss_pred HHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHh
Q 006201 178 AVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPY 257 (657)
Q Consensus 178 ~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 257 (657)
.+++.+. ..++.+|..|+..+..++.-....-.. ...+.+...+.++..+++..+|....+.+..+.....+.+.||
T Consensus 45 ~I~kkL~--KkD~~TK~KaL~eL~eli~~~~~e~~~-~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~ 121 (1312)
T KOG0803|consen 45 IIVKKLL--KRDETTKIKALQELSELIDTSDTEELK-GILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPF 121 (1312)
T ss_pred HHHHHHh--ccChHHHHHHHHhHHHhcccccchHHh-hhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3444444 578899999999999977532111000 0123455566677788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHH
Q 006201 258 IQDIFNITAKAVREDEEPVALQAIEF 283 (657)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~v~~~a~~~ 283 (657)
++.+++..+-...+.+..+...|...
T Consensus 122 LK~li~~wl~~~~d~~~~vs~aa~~s 147 (1312)
T KOG0803|consen 122 LKSLIPPWLGGQFDLDYPVSEAAKAS 147 (1312)
T ss_pred HHhhhhhhhheecccchHHHHHHHHH
Confidence 99999999887777777666655543
No 224
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=93.35 E-value=0.18 Score=32.02 Aligned_cols=28 Identities=25% Similarity=0.643 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 006201 410 ALNFMLTALMQDPNNHVKDTTAWTLGRMF 438 (657)
Q Consensus 410 i~~~l~~~l~~d~~~~vr~~a~~~l~~l~ 438 (657)
.+|.++..+ .++++.||..|+|++++++
T Consensus 13 ~i~~Lv~ll-~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLL-KSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHT-TSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-cCCCHHHHHHHHHHHHHHh
Confidence 689999999 9999999999999999986
No 225
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.32 E-value=1.7 Score=42.80 Aligned_cols=132 Identities=11% Similarity=0.081 Sum_probs=99.3
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhcc
Q 006201 411 LNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFE 489 (657)
Q Consensus 411 ~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~ 489 (657)
+..++..+ ++.+..||..|+.-+..+....+ .........+++.+.....| +..||......+..++....
T Consensus 60 lkeLl~ql-kHhNakvRkdal~glkd~l~s~p-------~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~ 131 (393)
T KOG2149|consen 60 LKELLSQL-KHHNAKVRKDALNGLKDLLKSHP-------AELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPAC 131 (393)
T ss_pred HHHHHhhh-cCchHhhhHHHHHHHHHHHHhCh-------HHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcc
Confidence 45566778 99999999999999988887743 23445667777777777776 68899999999998776543
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Q 006201 490 DAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELH 558 (657)
Q Consensus 490 ~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~ 558 (657)
+..+.|++.-+++-+...+.... ..+|.-.+..+..++..+++.+..+...+++.+.+.+.
T Consensus 132 -----~e~~sp~~~l~~~yi~~AMThit---~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~ 192 (393)
T KOG2149|consen 132 -----KEDQSPMVSLLMPYISSAMTHIT---PEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVIS 192 (393)
T ss_pred -----hhhhcchHHHHHHHHHHHHhhcc---HHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 23478888888888888776554 57788899999999999998777666666665554443
No 226
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=93.29 E-value=8.4 Score=39.91 Aligned_cols=76 Identities=24% Similarity=0.222 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHH-HHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCC--
Q 006201 53 VESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKS-FILKTLSSPAHDARSTASQVVAKVAGIELPHKQW-- 129 (657)
Q Consensus 53 ~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~-~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~-- 129 (657)
...|..|+..|...+. .| +.+....+.. .|+..|.++...-|..+|.++...+...-..+.-
T Consensus 101 ~r~Ri~aA~ALG~l~~------------~~---~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~ 165 (441)
T PF12054_consen 101 IRARIAAAKALGLLLS------------YW---PESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPP 165 (441)
T ss_pred HHHHHHHHHHHHHHHH------------hc---ccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCcc
Confidence 6789999999998765 33 3333444444 5888898888888899999999999886432233
Q ss_pred -chHHHHHHHhhcCC
Q 006201 130 -PELIGALLSNIHQL 143 (657)
Q Consensus 130 -~~l~~~l~~~l~~~ 143 (657)
+.+.+.|...+.++
T Consensus 166 ~~~l~~~L~~~L~~~ 180 (441)
T PF12054_consen 166 PQALSPRLLEILENP 180 (441)
T ss_pred HHHHHHHHHHHHcCC
Confidence 36778888888754
No 227
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=93.08 E-value=6 Score=41.86 Aligned_cols=165 Identities=15% Similarity=0.161 Sum_probs=106.8
Q ss_pred ccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchh-hh---HHHhhhhcccCChHHHHHHHHHHHHhcCCCChHHHHH
Q 006201 36 PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQ-HR---KFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARST 111 (657)
Q Consensus 36 ~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~-~~---~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~ 111 (657)
.+|...++.++.++-..+....--...|++..-...+ .. ...+......++|...-.-...+...|.++.-.+|-.
T Consensus 239 s~~~aeli~~isde~n~~~l~edi~~~l~~l~fn~~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~ 318 (1128)
T COG5098 239 SGLIAELIPSISDELNRCALKEDIPVLLKNLSFNLPDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCC 318 (1128)
T ss_pred HHHHHHHHHHhHHHhhhhhhhcccHHHHhhceeecccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHH
Confidence 4566666666665211122222223455553322111 11 1123334445667666555567778888888899998
Q ss_pred HHHHHHHHHhhhcCC--------CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhcc
Q 006201 112 ASQVVAKVAGIELPH--------KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGM 183 (657)
Q Consensus 112 aa~~l~~i~~~~~~~--------~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l 183 (657)
...+.+.++...... ...+.++..+.+.+++..+-.|..|+.++..|++.- .. . ...-..+...+...+
T Consensus 319 ~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~-sk-~-~~~r~ev~~lv~r~l 395 (1128)
T COG5098 319 FLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLN-SK-T-VGRRHEVIRLVGRRL 395 (1128)
T ss_pred HHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCc-cc-c-cchHHHHHHHHHHHh
Confidence 888888887764321 134678888888889999999999999999998853 11 2 222345666777788
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh
Q 006201 184 NASESNNDVRLAATRALYNALG 205 (657)
Q Consensus 184 ~~~~~~~~vr~~al~~l~~~~~ 205 (657)
. |.+.-||+.|++.++.++.
T Consensus 396 q--Drss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 396 Q--DRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred h--hhhHHHHHHHHHHHHHHHh
Confidence 8 8899999999999998764
No 228
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=93.08 E-value=7.8 Score=38.67 Aligned_cols=90 Identities=11% Similarity=0.158 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhh
Q 006201 524 RTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFM 603 (657)
Q Consensus 524 ~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 603 (657)
...++..+.+++..-.-...||+.+++|.++..+-...-.. .++..+ +-.+|..+..+++.+++.++.. ..
T Consensus 234 L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~--~~~~~~-h~~LRd~AA~ll~~i~~~f~~~------y~ 304 (343)
T cd08050 234 LIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCS--RPPDDN-HWALRDYAARLLAQICRKFSTS------YN 304 (343)
T ss_pred HHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcC--CCCCch-HHHHHHHHHHHHHHHHHHcCCC------CC
Confidence 33566666666666666688999999999998775432111 010111 2379999999999999999998 66
Q ss_pred HHHHHHHHHHHHHHcccCC
Q 006201 604 QYADQMMGLFLRVFAIRSA 622 (657)
Q Consensus 604 ~~~~~i~~~l~~~l~~~~~ 622 (657)
...+.++..+.+.+-++..
T Consensus 305 ~l~~ri~~tl~k~l~d~~~ 323 (343)
T cd08050 305 TLQPRITRTLLKALLDPKK 323 (343)
T ss_pred cHHHHHHHHHHHHHcCCCC
Confidence 6788899999999887543
No 229
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.89 E-value=37 Score=43.67 Aligned_cols=292 Identities=12% Similarity=0.124 Sum_probs=146.0
Q ss_pred HHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhh----cCC-------CchhchHHHHHhhhcCcchhhHHHHHH
Q 006201 321 LVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVART----VGD-------DIVPLVMPFVEENITKQEWRQREAATY 389 (657)
Q Consensus 321 l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~----~~~-------~~~~~l~~~l~~~l~~~~~~~r~aal~ 389 (657)
+++.+..++++.+ -..+.++..++..+... +|. .+.+.+++-+.....++.|..|.+++.
T Consensus 985 ~ldal~~~l~~~~---------~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~ 1055 (3550)
T KOG0889|consen 985 FLDALVESLSHEN---------SEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVN 1055 (3550)
T ss_pred HHHHHHHHHhccc---------hhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCc
Confidence 3566666666321 24566777777776553 232 234455555556667788999999999
Q ss_pred HHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHH--------HHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHH
Q 006201 390 AFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHV--------KDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIIS 461 (657)
Q Consensus 390 ~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~v--------r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~ 461 (657)
.++.+.+......+..+...++..+.-.+ .|-..++ +..-...+..+...... +.........++.
T Consensus 1056 gI~~l~~~~~~~~l~d~~~d~~~~l~fvl-~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~-----~~~~~~~~~~~~~ 1129 (3550)
T KOG0889|consen 1056 GIKCLIESMPSLWLLDFQVDILKALFFVL-KDTESEVSSLPLDEAKDILMDILRVIFIDELA-----EEERAKSAMNVFS 1129 (3550)
T ss_pred eeeeehhhchHHHHHHHHHHHhhhHHHhh-cCCccccccchHHHHHHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHH
Confidence 99998887532223344455666666555 5432222 22222222222222211 1123345666777
Q ss_pred HHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHH-HHhhcccc-chhhhHHHHHHHHHHHHHHhc
Q 006201 462 VLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQAL-LTVTHRED-AGESRLRTAAYETLNEVVRCS 538 (657)
Q Consensus 462 ~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L-~~~l~~~~-~~~~~~~~~~~~al~~l~~~~ 538 (657)
.+...|.+ +..||..+...|..+.+..+ ..+...++.+-+.+ ......+- ......+...++++...+...
T Consensus 1130 ~lv~eL~npN~~VR~~~~~~L~~i~~~s~------~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~ 1203 (3550)
T KOG0889|consen 1130 PLVLELFNPNSDVREFSQKLLRLISELSG------KSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLG 1203 (3550)
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHcC------CcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcC
Confidence 77776665 78999999999999988643 22333333333333 11111111 002344445667777777666
Q ss_pred ccc--cHHHHHHHHHHHHHHHHHH----HhhhcCChh-HHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHH
Q 006201 539 TDE--TAPMVMQLVPLIMMELHQT----LEAQKLSSD-EREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMG 611 (657)
Q Consensus 539 ~~~--~~~~~~~l~~~l~~~l~~~----~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~ 611 (657)
+.. +.+-...+.-.+....... ......+.. .......+|...++.+++......-. .+...+|-+.++.
T Consensus 1204 p~~f~~~~~l~~l~~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~---~~~~~~~r~kii~ 1280 (3550)
T KOG0889|consen 1204 PCLFDFTEELYRLKRFLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFR---TPQHAELREKIIA 1280 (3550)
T ss_pred CcccCchHHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhccccc---chhhhhhhhHHHH
Confidence 642 2221111111111111110 000000000 00001123433344444433332221 1114567888899
Q ss_pred HHHHHHcccCCcchhhHHHHHHHHH
Q 006201 612 LFLRVFAIRSATAHEEAMLAIGALA 636 (657)
Q Consensus 612 ~l~~~l~~~~~~v~~~~~~~l~~l~ 636 (657)
.+.+.+..+.+++.+.+..++-...
T Consensus 1281 v~fk~l~~~~~Ei~~~~~~~l~~v~ 1305 (3550)
T KOG0889|consen 1281 VFFKSLYKRSSELIEVALEGLRKVL 1305 (3550)
T ss_pred HHHHHHcCChHHHHHHHHHHHHhhh
Confidence 9888888877777666655554433
No 230
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.82 E-value=25 Score=41.44 Aligned_cols=172 Identities=13% Similarity=0.108 Sum_probs=99.1
Q ss_pred hHHHHHHHHHhhc-CCCchhchHHHHHhhhc-CcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHH
Q 006201 348 AGGTCLGLVARTV-GDDIVPLVMPFVEENIT-KQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNH 425 (657)
Q Consensus 348 ~a~~~L~~l~~~~-~~~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~ 425 (657)
.|.-|.+...... +....+.++..+..... +..|++|.+.+..+....-...--......+.|-..+.+.+ .|....
T Consensus 1506 ~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l-~D~~i~ 1584 (1710)
T KOG1851|consen 1506 SALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLL-NDDQIE 1584 (1710)
T ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH-cchHHH
Confidence 4445555544443 55677777777774333 45699999998888775532111123344567777888889 999889
Q ss_pred HHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc---chHHHHHHHHHHHHHHhhccCCCCCCCCCchhH
Q 006201 426 VKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD---VPNVAEKACGALYFLAQGFEDAISPSSPLTPFF 502 (657)
Q Consensus 426 vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d---~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~ 502 (657)
||..|..+|+-+...-.. ......-......++. ...-...|.-+++.++-.+ +-.+..++
T Consensus 1585 vre~Aa~~Lsgl~~~s~~----------~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~Vlaf------Py~vP~wi 1648 (1710)
T KOG1851|consen 1585 VREEAAKCLSGLLQGSKF----------QFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAF------PYVVPLWI 1648 (1710)
T ss_pred HHHHHHHHHHHHHhcccc----------ccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhc------cccchhhh
Confidence 999999999877765321 1111222233333332 2233456778888887654 33444455
Q ss_pred HHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhccc
Q 006201 503 QEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD 540 (657)
Q Consensus 503 ~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~ 540 (657)
+..+..+.....+. ..++..+-++++.+-+...+
T Consensus 1649 p~~L~~Ls~fa~e~----~~i~~tvkktvseFrrth~D 1682 (1710)
T KOG1851|consen 1649 PKPLMNLSSFARES----AAIKQTVKKTVSEFRRTHAD 1682 (1710)
T ss_pred HHHHHHHHhhcCCc----hHHHHHHHHHHHHHHHHhhh
Confidence 54444444433332 34454555666665555443
No 231
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=92.82 E-value=4.5 Score=35.24 Aligned_cols=130 Identities=16% Similarity=0.196 Sum_probs=81.8
Q ss_pred cccHHHHHHHHHHHcc------------------cc-hHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhh
Q 006201 453 QGNCQQIISVLLQSMK------------------DV-PNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVT 513 (657)
Q Consensus 453 ~~~~~~il~~l~~~l~------------------d~-~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l 513 (657)
.++++.++|.+...+. |+ -.+|..|..++.++++.+.. .+ .+..++..+...+
T Consensus 4 ~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~------~~--~~~~~~~~v~~GL 75 (169)
T PF08623_consen 4 RPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLS------RI--DISEFLDRVEAGL 75 (169)
T ss_dssp TTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCS------SS---HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHH------hC--CHHHHHHHHHhhc
Confidence 3567888888887652 22 46899999999999997643 22 2556677777777
Q ss_pred ccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhC
Q 006201 514 HREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLG 593 (657)
Q Consensus 514 ~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 593 (657)
.+ + .+++.-++..+..++...+....+.+..+.+.+-..+....... ....+.+...++...++.++..+-..+.
T Consensus 76 ~D-~---~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~-AvkQE~Ek~~E~~rs~lr~~~~l~~~i~ 150 (169)
T PF08623_consen 76 KD-E---HDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKEN-AVKQEIEKQQELIRSVLRAVKALNSKIP 150 (169)
T ss_dssp SS-----HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TT-S-HHHHHHHHHHHHHHHHHHHHH-HSST
T ss_pred CC-c---HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCC-cccccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 76 2 57887888999999999887666666666666655555332211 1122333333445568888888877765
Q ss_pred CC
Q 006201 594 SS 595 (657)
Q Consensus 594 ~~ 595 (657)
..
T Consensus 151 ~~ 152 (169)
T PF08623_consen 151 GA 152 (169)
T ss_dssp S-
T ss_pred cc
Confidence 44
No 232
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=92.29 E-value=0.62 Score=40.43 Aligned_cols=78 Identities=15% Similarity=0.170 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHH
Q 006201 187 ESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITA 266 (657)
Q Consensus 187 ~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~ 266 (657)
|.+-++|++|.+|++.++....... ....+++.+...+.| +.+++.-++..+.+++...|..+.+.+..+++.+-
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~~~----~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~ 112 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLSRI----DISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLR 112 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCSSS-----HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhC----CHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 4577999999999999887433222 235678888888877 89999999999999999999888887777777665
Q ss_pred HHH
Q 006201 267 KAV 269 (657)
Q Consensus 267 ~~~ 269 (657)
..+
T Consensus 113 ~~L 115 (169)
T PF08623_consen 113 KTL 115 (169)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 233
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=91.73 E-value=24 Score=38.86 Aligned_cols=122 Identities=16% Similarity=0.159 Sum_probs=70.9
Q ss_pred ChHHHHHHHHHHHHHHhhhcCC------------CCCchHHHHHHHhh----cCCChhHHHHHHHHHHHHhhhccccccc
Q 006201 105 AHDARSTASQVVAKVAGIELPH------------KQWPELIGALLSNI----HQLPPHTKQATLETLGYICEEVSSDAVE 168 (657)
Q Consensus 105 ~~~vr~~aa~~l~~i~~~~~~~------------~~~~~l~~~l~~~l----~~~~~~~~~~~l~~l~~i~~~~~~~~l~ 168 (657)
++.++..+..+++.++...... ..-.++++.+...+ ...+...+..++++|+.+.-
T Consensus 448 ~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-------- 519 (618)
T PF01347_consen 448 SPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-------- 519 (618)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---------
T ss_pred ChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--------
Confidence 4689999999999998875432 11234444444444 34566777788888887532
Q ss_pred hhhHhHHHHHHHhccCCC-CCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHH
Q 006201 169 QDHVNKILTAVVQGMNAS-ESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVA 245 (657)
Q Consensus 169 ~~~~~~l~~~l~~~l~~~-~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~ 245 (657)
...++.+...+... +....+|.+|+.+|..+....+. ..++.+++++.. ...+.++|.+|+..|..
T Consensus 520 ----~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~-----~v~~~l~~I~~n--~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 520 ----PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE-----KVREILLPIFMN--TTEDPEVRIAAYLILMR 586 (618)
T ss_dssp ----GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH-----HHHHHHHHHHH---TTS-HHHHHHHHHHHHH
T ss_pred ----chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH-----HHHHHHHHHhcC--CCCChhHHHHHHHHHHh
Confidence 12345555555532 35778999999999876443221 112334444433 23578899888876665
No 234
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=91.48 E-value=0.52 Score=36.45 Aligned_cols=57 Identities=9% Similarity=0.205 Sum_probs=46.3
Q ss_pred CCcchHhhhHHHHHHHHHhhcCC---CchhchHHHHHhhhcCcc--hhhHHHHHHHHHHhhc
Q 006201 340 EGAWNIAMAGGTCLGLVARTVGD---DIVPLVMPFVEENITKQE--WRQREAATYAFGSILE 396 (657)
Q Consensus 340 ~~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~~~l~~~~--~~~r~aal~~l~~i~~ 396 (657)
++.|.+|..|++.|..++..++. .+-|.+...+...+.|++ +..+++|+.+|..+..
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 35699999999999999999874 356777777777777654 7889999999999853
No 235
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.36 E-value=25 Score=38.31 Aligned_cols=159 Identities=16% Similarity=0.131 Sum_probs=85.1
Q ss_pred HHHHHHHHHhhc--C-CCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhc-CCCCCc------chHHHHHHHHHHHHHh
Q 006201 349 GGTCLGLVARTV--G-DDIVPLVMPFVEENITKQEWRQREAATYAFGSILE-GPSPEK------LVPLVNIALNFMLTAL 418 (657)
Q Consensus 349 a~~~L~~l~~~~--~-~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~-~~~~~~------~~~~~~~i~~~l~~~l 418 (657)
|..++..+.... + ...+..+.+++..--..++...|.+++.+++++.. .|.... ...+++.+...+-...
T Consensus 376 a~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~ 455 (574)
T smart00638 376 AAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAV 455 (574)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHH
Confidence 344444444332 2 23444455444432222356789999999999886 332111 1233333444444444
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCC
Q 006201 419 MQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSP 497 (657)
Q Consensus 419 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~ 497 (657)
+..+...+..++++||++..-.. +..+.+.+. +-.+ +..+|..|++||..+....
T Consensus 456 -~~~~~~~~~~~LkaLGN~g~~~~-------------i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~--------- 511 (574)
T smart00638 456 -SKGDEEEIQLYLKALGNAGHPSS-------------IKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRD--------- 511 (574)
T ss_pred -hcCCchheeeHHHhhhccCChhH-------------HHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhC---------
Confidence 45566677888888887665321 122222222 1112 4689999999999887542
Q ss_pred CchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcc
Q 006201 498 LTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCST 539 (657)
Q Consensus 498 l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~ 539 (657)
-..+.+.++.++.+... +..+|..|+. .+.+.-|
T Consensus 512 ----p~~v~~~l~~i~~n~~e-~~EvRiaA~~---~lm~t~P 545 (574)
T smart00638 512 ----PRKVQEVLLPIYLNRAE-PPEVRMAAVL---VLMETKP 545 (574)
T ss_pred ----chHHHHHHHHHHcCCCC-ChHHHHHHHH---HHHhcCC
Confidence 11334445555555443 5678866555 4444444
No 236
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=91.33 E-value=15 Score=35.77 Aligned_cols=163 Identities=9% Similarity=0.102 Sum_probs=105.4
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhc-cccccchhhHhHHHHHHHhccC
Q 006201 106 HDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEV-SSDAVEQDHVNKILTAVVQGMN 184 (657)
Q Consensus 106 ~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~-~~~~l~~~~~~~l~~~l~~~l~ 184 (657)
+.-|+-.+.+-..+...+.. .+|.+++..|.... +++. ... ....+ ++-..+...+.++++
T Consensus 3 ~k~kky~~~v~k~L~~Fe~~-~EWAD~is~L~kL~------------k~lq---~~~~~~~~I--P~k~~v~krLaqCL~ 64 (307)
T PF04118_consen 3 SKYKKYNAEVEKALKSFESS-SEWADYISFLGKLL------------KALQ---NSNNQFPYI--PHKLQVSKRLAQCLN 64 (307)
T ss_pred HHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHH------------HHHh---ccCCCCcee--CcHHHHHHHHHHhcC
Confidence 34455566666666666654 69999887776643 2332 111 01112 444556667788888
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhchh-hcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH
Q 006201 185 ASESNNDVRLAATRALYNALGFAQA-NFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFN 263 (657)
Q Consensus 185 ~~~~~~~vr~~al~~l~~~~~~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~ 263 (657)
. .-...|...|+++...+...+.. .+..+ ...+.+.++.++...+..+|...++.+....-.-+..+.+.++.++-
T Consensus 65 P-~LPsGVH~KaLevY~~IF~~ig~~~L~~d--l~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~ 141 (307)
T PF04118_consen 65 P-ALPSGVHQKALEVYEYIFERIGPDGLAQD--LPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLIL 141 (307)
T ss_pred C-CCChHHHHHHHHHHHHHHHhcCHHHHHhh--cHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 4 44567889999998887765532 22211 13567777787777777888888877777554445566777778877
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHhH
Q 006201 264 ITAKAVREDEEPVALQAIEFWSSVCD 289 (657)
Q Consensus 264 ~~~~~~~~~~~~v~~~a~~~~~~l~~ 289 (657)
-++..+.++..++...++..+..+..
T Consensus 142 slLpGLede~sE~~~~~~~ll~~l~~ 167 (307)
T PF04118_consen 142 SLLPGLEDEGSEFFDRTLKLLDKLKE 167 (307)
T ss_pred HhccccccCCchHHHHHHHHHHHHHH
Confidence 77778887777777777777776665
No 237
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=91.09 E-value=16 Score=36.10 Aligned_cols=88 Identities=15% Similarity=0.154 Sum_probs=51.9
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-----chHHHHHHHHHHHHH
Q 006201 410 ALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-----VPNVAEKACGALYFL 484 (657)
Q Consensus 410 i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-----~~~v~~~a~~al~~l 484 (657)
.+..+++.+ ..++..++..|+..++.+....+. ........+++.+++.+.+ +..++..|+.++..+
T Consensus 106 ~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~~~~-------~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~L 177 (312)
T PF03224_consen 106 PYSPFLKLL-DRNDSFIQLKAAFILTSLLSQGPK-------RSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNL 177 (312)
T ss_dssp -HHHHHHH--S-SSHHHHHHHHHHHHHHHTSTTT---------HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHH
T ss_pred hHHHHHHHh-cCCCHHHHHHHHHHHHHHHHcCCc-------cccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHH
Confidence 345666777 888999999999999999887642 2222224555666655552 345678888888888
Q ss_pred HhhccCCCCCCCCCchhH--HHHHHHHHHhh
Q 006201 485 AQGFEDAISPSSPLTPFF--QEIVQALLTVT 513 (657)
Q Consensus 485 ~~~~~~~~~~~~~l~~~~--~~i~~~L~~~l 513 (657)
+.. ......+ ...++.+...+
T Consensus 178 L~~--------~~~R~~f~~~~~v~~l~~iL 200 (312)
T PF03224_consen 178 LRS--------KEYRQVFWKSNGVSPLFDIL 200 (312)
T ss_dssp HTS--------HHHHHHHHTHHHHHHHHHHH
T ss_pred hCc--------chhHHHHHhcCcHHHHHHHH
Confidence 754 1122222 45566666666
No 238
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=91.01 E-value=17 Score=35.92 Aligned_cols=151 Identities=13% Similarity=0.181 Sum_probs=99.3
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcccccc--c----hhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHH
Q 006201 131 ELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAV--E----QDHVNKILTAVVQGMNASESNNDVRLAATRALYNAL 204 (657)
Q Consensus 131 ~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l--~----~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~ 204 (657)
+++..|+..+..-+-+.|.-+..+++.+.+.-..... . ..+..+++..++.+... +++-..+-..+..|+
T Consensus 76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~----~dial~~g~mlRec~ 151 (335)
T PF08569_consen 76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYEN----PDIALNCGDMLRECI 151 (335)
T ss_dssp THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGS----TTTHHHHHHHHHHHT
T ss_pred CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcC----ccccchHHHHHHHHH
Confidence 6777788888888888999999999988876422221 0 12336778888888773 333344445555555
Q ss_pred hhc---hhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhH----HhHHHHHHHHHHHHhcCChHHH
Q 006201 205 GFA---QANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLA----PYIQDIFNITAKAVREDEEPVA 277 (657)
Q Consensus 205 ~~~---~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~v~ 277 (657)
.+- .-.+.. ..+..++..++.++.++...++.++..+...+..... .+...++......+.+.+.-.+
T Consensus 152 k~e~l~~~iL~~-----~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 152 KHESLAKIILYS-----ECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp TSHHHHHHHHTS-----GGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred hhHHHHHHHhCc-----HHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 431 011111 1223356677889999999999999998887665444 4456778877778888888899
Q ss_pred HHHHHHHHHHhHH
Q 006201 278 LQAIEFWSSVCDE 290 (657)
Q Consensus 278 ~~a~~~~~~l~~~ 290 (657)
.+++.+++.+...
T Consensus 227 rqslkLL~ellld 239 (335)
T PF08569_consen 227 RQSLKLLGELLLD 239 (335)
T ss_dssp HHHHHHHHHHHHS
T ss_pred hhhHHHHHHHHHc
Confidence 9999998887753
No 239
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=90.56 E-value=25 Score=36.96 Aligned_cols=206 Identities=15% Similarity=0.142 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHhcCcccHHH---HHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHH
Q 006201 18 TVRKQAEESLKQYQEQNLPGFLL---SLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIK 94 (657)
Q Consensus 18 ~~r~~A~~~L~~~~~~~~~~~~~---~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~ 94 (657)
..|-+|-+.|.+.-++-+..-+. .+..-|.+++.+.+.|+.|..+|...++.... .+ ...|
T Consensus 5 ~~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~------------~~----~~~R 68 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDS------------SS----GLMR 68 (464)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHcccc------------cc----HHHH
Confidence 45666666666443332223333 33344445677899999999999999875321 11 2345
Q ss_pred HHHHHhcCCCC-h---HHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcC---------------------------C
Q 006201 95 SFILKTLSSPA-H---DARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQ---------------------------L 143 (657)
Q Consensus 95 ~~ll~~l~~~~-~---~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~---------------------------~ 143 (657)
..+++.+.++. + ..|-.+-.+|..=++.. . ..-.++.|.+...+.. .
T Consensus 69 ~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi-~-~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 146 (464)
T PF11864_consen 69 AEFFRDISDPSNDDDFDLRLEALIALTDNGRDI-D-FFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDN 146 (464)
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc-h-hcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccc
Confidence 55566555431 2 34444444444322221 1 1223444444444321 0
Q ss_pred ChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHH
Q 006201 144 PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRV 223 (657)
Q Consensus 144 ~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~ 223 (657)
+...-...+..+..+++.- ...++...+..++..+...... ....+.-..+++.|..++.|.. ....-...++..
T Consensus 147 ~~~~l~~ll~~l~nviKfn-~~~l~e~~i~~lv~~i~~iC~~-Ts~~~di~~~L~vldaii~y~~---iP~~sl~~~i~v 221 (464)
T PF11864_consen 147 EESNLSDLLQFLVNVIKFN-FNYLDEDEISSLVDQICTICKS-TSSEDDIEACLSVLDAIITYGD---IPSESLSPCIEV 221 (464)
T ss_pred hhhhHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHcCc---CChHHHHHHHHH
Confidence 1112223344444444432 4445456677777776665443 3344444788888888887631 111222567777
Q ss_pred HHhhccCCcHHHHHHHHHHHHHHHH
Q 006201 224 VCEATLSPEVKIRQAAFECLVAISS 248 (657)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~l~~l~~ 248 (657)
|+...... +....+-+++..++.
T Consensus 222 LCsi~~~~--~l~~~~w~~m~nL~~ 244 (464)
T PF11864_consen 222 LCSIVNSV--SLCKPSWRTMRNLLK 244 (464)
T ss_pred HhhHhccc--ccchhHHHHHHHHHc
Confidence 77765433 555556666666664
No 240
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.55 E-value=1 Score=36.35 Aligned_cols=70 Identities=19% Similarity=0.222 Sum_probs=41.8
Q ss_pred hHHHHHHHhh-cCCChhHHHHHHHHHHHHhhhccccccchhhH--hHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHh
Q 006201 131 ELIGALLSNI-HQLPPHTKQATLETLGYICEEVSSDAVEQDHV--NKILTAVVQGMNASESNNDVRLAATRALYNALG 205 (657)
Q Consensus 131 ~l~~~l~~~l-~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~--~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 205 (657)
+++..|++.+ .+.++....-|+.=++.+++.. |..- ..+ -..-..+++.++ +++++||..|+.|+..++.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~-p~gr--~ii~~lg~K~~vM~Lm~--h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHY-PNGR--NIIEKLGAKERVMELMN--HEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH--GGGH--HHHHHHSHHHHHHHHTS---SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHC-hhHH--HHHHhcChHHHHHHHhc--CCCHHHHHHHHHHHHHHHH
Confidence 4555555555 2334455555666666666665 3311 111 122445677778 7899999999999998764
No 241
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.36 E-value=22 Score=41.95 Aligned_cols=229 Identities=15% Similarity=0.211 Sum_probs=124.4
Q ss_pred ChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccch--hhHhHHHHHHHhc
Q 006201 105 AHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQ--DHVNKILTAVVQG 182 (657)
Q Consensus 105 ~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~--~~~~~l~~~l~~~ 182 (657)
+..||..+..|++. ... ..|..++..+-....+.+..+.+.+...+..+........+.. ..+.+.++.+...
T Consensus 1050 s~~Irelv~rC~~~--nik---SGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~cl~~F 1124 (1514)
T KOG0929|consen 1050 SAEIRELVVRCISS--NIK---SGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVKCLEEF 1124 (1514)
T ss_pred cchhHHHHHhhhhh--hhh---hhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHHHHHHH
Confidence 46788888888882 211 5899999999888888888888888888876666542344421 2334445555443
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhhchhh-----cC------ChhhHHHHHHHHH---hhccCCcHHHHHHHHHHHHHHHH
Q 006201 183 MNASESNNDVRLAATRALYNALGFAQAN-----FS------NDMERDYIMRVVC---EATLSPEVKIRQAAFECLVAISS 248 (657)
Q Consensus 183 l~~~~~~~~vr~~al~~l~~~~~~~~~~-----~~------~~~~~~~il~~l~---~~~~~~~~~~~~~~~~~l~~l~~ 248 (657)
.++ ...+.....+++-+..++....+. +. .+.+...+++.+. ....+...++|..+++.+-.+..
T Consensus 1125 ~~~-~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF~il~ 1203 (1514)
T KOG0929|consen 1125 TKN-LGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLFDILK 1203 (1514)
T ss_pred HHh-cCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhhccHHHHHHHHHHHHHHHHH
Confidence 332 122233333444444444332222 11 0111112344433 33345788999999999999999
Q ss_pred HHHHhhHHhH-HHHHHHHHHHHhc----CChHH-----HHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhh
Q 006201 249 TYYEKLAPYI-QDIFNITAKAVRE----DEEPV-----ALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHAL 318 (657)
Q Consensus 249 ~~~~~~~~~~-~~l~~~~~~~~~~----~~~~v-----~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 318 (657)
.+++.|.+.. ..++..++..+.. .+... ...+.+.+..+++--.. .+.-+...|
T Consensus 1204 ~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~----------------~~~~l~~lL 1267 (1514)
T KOG0929|consen 1204 EHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQ----------------FFKQLNNLL 1267 (1514)
T ss_pred hhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHH
Confidence 9988776543 5566655444332 11111 11222222222221100 112233455
Q ss_pred hhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCc
Q 006201 319 PVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDI 364 (657)
Q Consensus 319 ~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~ 364 (657)
+.++..+..+++... -++.+.+..||..+....|..+
T Consensus 1268 ~~~~~ll~~ci~~~n---------~~la~~g~~cl~~l~~~n~~~f 1304 (1514)
T KOG0929|consen 1268 PKVLGLLVGCIKQDN---------QQLARIGTSCLLQLVSSNGEKF 1304 (1514)
T ss_pred HHHHHHHHHHhcCcc---------hhhHHhHHHHHHHHHHhccccc
Confidence 555555555555321 2456678888888887766443
No 242
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=89.98 E-value=17 Score=34.07 Aligned_cols=193 Identities=16% Similarity=0.195 Sum_probs=106.0
Q ss_pred CCChHHHHHHHHHHHHHHhcCc---ccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHH
Q 006201 14 SVDGTVRKQAEESLKQYQEQNL---PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVK 90 (657)
Q Consensus 14 s~d~~~r~~A~~~L~~~~~~~~---~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~ 90 (657)
..++......-..|-++...+. +-+...|.....+ .....+.++..++-...+..+ ..| +..+
T Consensus 12 ~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~--~~~~~~~~~~rLl~~lw~~~~--------r~f----~~L~ 77 (234)
T PF12530_consen 12 ISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQ--GSLELRYVALRLLTLLWKAND--------RHF----PFLQ 77 (234)
T ss_pred CCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcC--CchhHHHHHHHHHHHHHHhCc--------hHH----HHHH
Confidence 4677888888888888776531 2233223232332 234445565555555433221 111 2222
Q ss_pred HHHHHHHHHhc---CCC--ChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhh-cCCChhHHHHHHHHHHHHhhhccc
Q 006201 91 AQIKSFILKTL---SSP--AHDARSTASQVVAKVAGIELPHKQWPELIGALLSNI-HQLPPHTKQATLETLGYICEEVSS 164 (657)
Q Consensus 91 ~~i~~~ll~~l---~~~--~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~~l~~l~~i~~~~~~ 164 (657)
..+....++.. .+. ........+..+..++... | +.|+++++.+...+ .+.++..+-.++..+..+++.-
T Consensus 78 ~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~-p-~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~-- 153 (234)
T PF12530_consen 78 PLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSR-P-DHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE-- 153 (234)
T ss_pred HHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhC-h-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh--
Confidence 22333222221 112 2455566677888888887 7 49999999999999 7888889999999999998643
Q ss_pred cccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhh-cC---ChhhHHHHHHHHHhhccCCcH
Q 006201 165 DAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQAN-FS---NDMERDYIMRVVCEATLSPEV 233 (657)
Q Consensus 165 ~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~-~~---~~~~~~~il~~l~~~~~~~~~ 233 (657)
.+ ........+...+.. +..+.+- +.+.+++..++.. .+ .+.....+++.+..+....+.
T Consensus 154 -vv---d~~s~w~vl~~~l~~-~~rp~v~----~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 154 -VV---DFYSAWKVLQKKLSL-DYRPLVL----KSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred -hc---cHHHHHHHHHHhcCC-ccchHHH----HHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 11 112223333333332 4555544 3344444433321 11 112335677777777765553
No 243
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=89.74 E-value=5.2 Score=35.93 Aligned_cols=80 Identities=20% Similarity=0.203 Sum_probs=60.7
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhH
Q 006201 176 LTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLA 255 (657)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 255 (657)
++.+++... +++..+|..|++.+..++.. .+.++ ...++.+..+..++++.+|..+...+..+.++++..+.
T Consensus 10 l~~Il~~~~--~~~~~vr~~Al~~l~~il~q---GLvnP---~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 10 LKNILELCL--SSDDSVRLAALQVLELILRQ---GLVNP---KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHh--CCCHHHHHHHHHHHHHHHhc---CCCCh---HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 344444444 68899999999999987753 33332 46889999988999999999999999999999988776
Q ss_pred HhHHHHHH
Q 006201 256 PYIQDIFN 263 (657)
Q Consensus 256 ~~~~~l~~ 263 (657)
..+.+-+.
T Consensus 82 ~~~~~gi~ 89 (187)
T PF12830_consen 82 SRYSEGIR 89 (187)
T ss_pred HHHHHHHH
Confidence 54443333
No 244
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=89.73 E-value=26 Score=35.91 Aligned_cols=143 Identities=11% Similarity=0.137 Sum_probs=71.6
Q ss_pred hhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhc--hhhcCChhh
Q 006201 139 NIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFA--QANFSNDME 216 (657)
Q Consensus 139 ~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~--~~~~~~~~~ 216 (657)
.++.++..+...++.++..++..- +..........+++.+...++++ .+...+..++.|+..++..- ...|-.
T Consensus 109 lL~~~d~~i~~~a~~iLt~l~~~~-~~~~~~~~l~~~~~~l~~~l~~~-~~~~~~~~~v~~L~~LL~~~~~R~~f~~--- 183 (429)
T cd00256 109 LLNRQDQFIVHMSFSILAKLACFG-LAKMEGSDLDYYFNWLKEQLNNI-TNNDYVQTAARCLQMLLRVDEYRFAFVL--- 183 (429)
T ss_pred HHcCCchhHHHHHHHHHHHHHhcC-ccccchhHHHHHHHHHHHHhhcc-CCcchHHHHHHHHHHHhCCchHHHHHHH---
Confidence 556678888889999998887643 22221223344555566666532 23556666778888765420 111110
Q ss_pred HHHHHHHHHhhccC--CcHHHHHHHHHHHHHHHHHHHHhhHHhH--HHHHHHHHHHHhc-CChHHHHHHHHHHHHHhH
Q 006201 217 RDYIMRVVCEATLS--PEVKIRQAAFECLVAISSTYYEKLAPYI--QDIFNITAKAVRE-DEEPVALQAIEFWSSVCD 289 (657)
Q Consensus 217 ~~~il~~l~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~~~~~~~~-~~~~v~~~a~~~~~~l~~ 289 (657)
...++.+...++. .+....-.++-|+--+. +.......+ ..+++.+...++. ..+.+.+.++..+..+..
T Consensus 184 -~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLS--F~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 184 -ADGVPTLVKLLSNATLGFQLQYQSIFCIWLLT--FNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred -ccCHHHHHHHHhhccccHHHHHHHHHHHHHHh--ccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 1123333333332 13333334444443332 211122222 2466666666554 345566666666666655
No 245
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=88.50 E-value=41 Score=36.58 Aligned_cols=68 Identities=19% Similarity=0.143 Sum_probs=53.4
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhcC--------cccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccch
Q 006201 2 SAEVTQILLNAQSVDGTVRKQAEESLKQYQEQN--------LPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKE 71 (657)
Q Consensus 2 ~~~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~--------~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~ 71 (657)
..++.+++..+.++++.++..|-.+++.+...+ .-+-+..|+.++.. ...+++..|.-.|||++..+.
T Consensus 232 d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~--~~~evq~~acgaLRNLvf~~~ 307 (717)
T KOG1048|consen 232 DPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDH--RNDEVQRQACGALRNLVFGKS 307 (717)
T ss_pred ccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcC--CcHHHHHHHHHHHHhhhcccC
Confidence 456788899999999999999999998765432 24556677888874 578999999999999987654
No 246
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.08 E-value=36 Score=35.46 Aligned_cols=320 Identities=13% Similarity=0.094 Sum_probs=161.7
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHhhhcc-c-c--ccchhh---HhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHH
Q 006201 132 LIGALLSNIHQLPPHTKQATLETLGYICEEVS-S-D--AVEQDH---VNKILTAVVQGMNASESNNDVRLAATRALYNAL 204 (657)
Q Consensus 132 l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~-~-~--~l~~~~---~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~ 204 (657)
++..++..++ +....+.|..|+..+..... . + .+ ..+ ...+++...+.... ..+.+-+.+..+.+..+.
T Consensus 200 Li~l~F~sl~--~~~lhe~At~cic~ll~~~~~~~~~~~~-~~~l~~~v~~L~~~~~~a~~-~~d~d~~~a~~RIFtel~ 275 (559)
T KOG2081|consen 200 LITLAFRSLS--DDELHEEATECICALLYCSLDRSEGLPL-AAILFIGVIILETAFHLAMA-GEDLDKNEAICRIFTELG 275 (559)
T ss_pred HHHHHHHHcc--cchhhHHHHHHHHHHHHHhhhhhccCch-hHHHhccccccchHHHHhhc-ccCHHHHHHHHHHHHHHH
Confidence 4444555555 33455667777766655441 0 0 01 111 12233333333222 345666666777777665
Q ss_pred hhch-hhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHH--------HhhHHhHHHHHHHHHHHHhcCC--
Q 006201 205 GFAQ-ANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYY--------EKLAPYIQDIFNITAKAVREDE-- 273 (657)
Q Consensus 205 ~~~~-~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~--------~~~~~~~~~l~~~~~~~~~~~~-- 273 (657)
+-+. ....++...-.++..++.....++.++.+..+..+.++.+... ..+.||..+++..+..-.+-+.
T Consensus 276 eaf~~~i~~np~~~l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~ 355 (559)
T KOG2081|consen 276 EAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQ 355 (559)
T ss_pred HHHHHHHhhCCCcchhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCcc
Confidence 4221 1111111223455555555566788888888888887766432 2345666667666655443211
Q ss_pred -------h---HHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcc
Q 006201 274 -------E---PVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAW 343 (657)
Q Consensus 274 -------~---~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~ 343 (657)
. +.|....+.+..++-- +.. .+.+..+...+.. ....|
T Consensus 356 ~~l~Ee~~~f~~fR~~v~dvl~Dv~~i-----------------------igs--~e~lk~~~~~l~e-------~~~~W 403 (559)
T KOG2081|consen 356 FDLPEEESEFFEFRLKVGDVLKDVAFI-----------------------IGS--DECLKQMYIRLKE-------NNASW 403 (559)
T ss_pred ccCccchhHHHHHHHHHHHHHHHHHHH-----------------------hCc--HHHHHHHHHHHcc-------CCCch
Confidence 1 1222222222111110 000 0111122222221 13459
Q ss_pred hHhhhHHHHHHHHHhhcC---CCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcC
Q 006201 344 NIAMAGGTCLGLVARTVG---DDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQ 420 (657)
Q Consensus 344 ~~r~~a~~~L~~l~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~ 420 (657)
..-.++..++..++.... ..++|.++..+.+.- ..-..|++++..+|.+.+-.. .-...+.-++..+...+ +
T Consensus 404 e~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp--~Q~~~~~ts~ll~g~~~ew~~--~~p~~le~v~~~~~~~~-~ 478 (559)
T KOG2081|consen 404 EEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLP--EQAPLRYTSILLLGEYSEWVE--QHPELLEPVLRYIRQGL-Q 478 (559)
T ss_pred HHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCc--cchhHHHHHHHHHHHHHHHHH--hCcHHHHHHHHHHHHHh-h
Confidence 999999999999998774 467777777776532 223599999999999876421 11123344455566666 4
Q ss_pred CCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHcc--cchHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 006201 421 DPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK--DVPNVAEKACGALYFLAQGFEDAISPSSPL 498 (657)
Q Consensus 421 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~--d~~~v~~~a~~al~~l~~~~~~~~~~~~~l 498 (657)
+.. ...++..+...++..+.. .....++.++..+..... -++.... .+..+..++.++. ....
T Consensus 479 ~~~--~as~~a~~~~~i~~~c~~-------~~~~l~~~~~~l~~~l~~~~~~~e~a~-l~~~~s~i~~~lp-----~~k~ 543 (559)
T KOG2081|consen 479 LKR--LASAAALAFHRICSACRV-------QMTCLIPSLLELIRSLDSTQINEEAAC-LLQGISLIISNLP-----AHKA 543 (559)
T ss_pred hcc--hhHHHHHHHHHHHHHHHH-------HhhhhhHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHhcCC-----Hhhh
Confidence 433 666677777777777652 223333333333322221 1333333 5566666665542 2334
Q ss_pred chhHHHHHH
Q 006201 499 TPFFQEIVQ 507 (657)
Q Consensus 499 ~~~~~~i~~ 507 (657)
.+.++++..
T Consensus 544 ~~~~~el~~ 552 (559)
T KOG2081|consen 544 KIALEELCE 552 (559)
T ss_pred hHHHHHHhh
Confidence 444444443
No 247
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.84 E-value=2.4 Score=37.62 Aligned_cols=94 Identities=12% Similarity=0.175 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHH
Q 006201 456 CQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEV 534 (657)
Q Consensus 456 ~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l 534 (657)
+...+|.+..+|.+ +-..+.-|-..+..++... ++.+.|.++.++..|-+.+...+ ..+...++.+|..+
T Consensus 112 y~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~------g~kilpVLPqLI~plK~al~trd---~ev~~~~Lkvlq~l 182 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAETDHPYRFVARQGITDLLLAG------GEKILPVLPQLILPLKAALVTRD---DEVICRTLKVLQQL 182 (262)
T ss_pred chHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhc------ccccccccHHHHHHHHHHHhhcc---HHHHHHHHHHHHHH
Confidence 46677888888875 3344445555566666542 46788999999999999998775 45555677777777
Q ss_pred HHhcc---cccHHHHHHHHHHHHHHHHH
Q 006201 535 VRCST---DETAPMVMQLVPLIMMELHQ 559 (657)
Q Consensus 535 ~~~~~---~~~~~~~~~l~~~l~~~l~~ 559 (657)
+...+ .-..||+.+++|.+ +.+++
T Consensus 183 v~~~~~vG~aLVPfYRQlLp~~-n~~k~ 209 (262)
T KOG3961|consen 183 VVSVGCVGAALVPFYRQLLPVL-NTFKN 209 (262)
T ss_pred HHhccccchhhhhHHHHhhhhh-hhhcc
Confidence 66655 56889999999965 44443
No 248
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.81 E-value=74 Score=38.67 Aligned_cols=233 Identities=14% Similarity=0.133 Sum_probs=129.8
Q ss_pred HHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHHHHHhhhccCcCCCcc
Q 006201 372 VEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHV-KDTTAWTLGRMFEFLHGSTLETPI 450 (657)
Q Consensus 372 l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~v-r~~a~~~l~~l~~~~~~~~~~~~~ 450 (657)
+...+.++++..|.++..+++.++.... -.+++..+....+..+ ++..+.+ |.--..++|.+-++.++ .
T Consensus 881 ~~~sl~~~~p~~rc~~~ea~arLaq~v~---~~~f~a~~aq~~fdkl-as~~d~i~R~ghslalg~lhkyvgs------~ 950 (2067)
T KOG1822|consen 881 IVNSLINPNPKLRCAAAEALARLAQVVG---SAPFVASLAQNSFDKL-ASARDPITRTGHSLALGCLHKYVGS------I 950 (2067)
T ss_pred HhhhhccCChHHHHHHHHHHHHHHHhcc---ccchHHHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHHHhccC------C
Confidence 3445567788999999999998887532 2356677777777777 5544444 54445677777776652 3
Q ss_pred CCcccHHHHHHHHHHHccc--chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHH
Q 006201 451 INQGNCQQIISVLLQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAY 528 (657)
Q Consensus 451 ~~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~ 528 (657)
...+++..-+..++..-.| .|.|+.-+..++..+.+.- .....-+....+..+..++-........++...-
T Consensus 951 ~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~------~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~ 1024 (2067)
T KOG1822|consen 951 GSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSS------GPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYN 1024 (2067)
T ss_pred CCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCC------CceehhhHHHHHHHHHHHcCCCCcchhhhhhhhc
Confidence 4566777766677666666 3689999999999888753 2334567777777776666443322333333233
Q ss_pred HHHH------HHHHhcccccHHHHH-----HHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 006201 529 ETLN------EVVRCSTDETAPMVM-----QLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQ 597 (657)
Q Consensus 529 ~al~------~l~~~~~~~~~~~~~-----~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 597 (657)
.++. .++.+.|+...|-.. .+-...+-... .. .+.++. -....+++|+..+-..-.+..
T Consensus 1025 R~~~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~a-ll----ls~~d~----lnqa~ai~clqqlhlFapr~~- 1094 (2067)
T KOG1822|consen 1025 RCFNGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACA-LL----LSHSDP----LNQAAAIKCLQQLHLFAPRHV- 1094 (2067)
T ss_pred cccccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHH-Hh----cCCCcc----chHHHHHHHHHHHHhhcchhc-
Confidence 3333 666677654433221 11111111111 11 122232 234457788877666444331
Q ss_pred hhhHhhHHHHHHHHHHHHHHcccCCcchhhHHHHHHHHHH
Q 006201 598 TKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAY 637 (657)
Q Consensus 598 ~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~~~~l~~l~~ 637 (657)
..+.++..+...+.....-.|...+.++--++.
T Consensus 1095 -------n~~~lV~~L~~~l~s~~~i~r~~~~~clrql~~ 1127 (2067)
T KOG1822|consen 1095 -------NLDSLVLQLCSLLSSSYLILRRASFSCLRQLVQ 1127 (2067)
T ss_pred -------cHHHHHHHHHHHhcchhhhhhhhHHhhhhHHhH
Confidence 234445555555544433344444444444443
No 249
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=87.71 E-value=9.2 Score=32.05 Aligned_cols=82 Identities=13% Similarity=0.115 Sum_probs=58.7
Q ss_pred cHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHH-HHHHHHHHhhccccchhhhHHHHHHHHHH
Q 006201 455 NCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQ-EIVQALLTVTHREDAGESRLRTAAYETLN 532 (657)
Q Consensus 455 ~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~-~i~~~L~~~l~~~~~~~~~~~~~~~~al~ 532 (657)
.-...+..|-+.|.. ++.++..|...+..++.+++. ..-..+.. .++..+.+++......+..++..+++.+.
T Consensus 34 ~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~-----~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~ 108 (133)
T cd03561 34 GPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGK-----PFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELIL 108 (133)
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCh-----HHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 346777888888875 799999999999999999763 11122222 55556777776531225788889999999
Q ss_pred HHHHhcccc
Q 006201 533 EVVRCSTDE 541 (657)
Q Consensus 533 ~l~~~~~~~ 541 (657)
......+.+
T Consensus 109 ~W~~~f~~~ 117 (133)
T cd03561 109 AWSESFGGH 117 (133)
T ss_pred HHHHHhcCC
Confidence 998888753
No 250
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=87.62 E-value=47 Score=36.19 Aligned_cols=122 Identities=17% Similarity=0.177 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcc--cHHHHHHHHHHHcc-cchHHHHHHHHHHHHH
Q 006201 408 NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQG--NCQQIISVLLQSMK-DVPNVAEKACGALYFL 484 (657)
Q Consensus 408 ~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~~~il~~l~~~l~-d~~~v~~~a~~al~~l 484 (657)
+.++..-+.++....++.+-+++.-+|..++....... ...... --+..+|.+++.|+ ++..|...++.+|.++
T Consensus 517 p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~---~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNl 593 (717)
T KOG1048|consen 517 PSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWS---EYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNL 593 (717)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcch---hHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhh
Confidence 34444433444234678889999999988887543110 001111 12455788888888 4788888999999998
Q ss_pred HhhccCCCCCCCCCchhHHHHHHHHHHhhccccc---hhhhHHHHHHHHHHHHHHhcc
Q 006201 485 AQGFEDAISPSSPLTPFFQEIVQALLTVTHREDA---GESRLRTAAYETLNEVVRCST 539 (657)
Q Consensus 485 ~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~---~~~~~~~~~~~al~~l~~~~~ 539 (657)
...... +..+. ...++.|.+++..... ...++-..++.++..++....
T Consensus 594 s~d~rn----k~lig---k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~ 644 (717)
T KOG1048|consen 594 SRDIRN----KELIG---KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNV 644 (717)
T ss_pred ccCchh----hhhhh---cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhH
Confidence 764321 22222 3556777777765442 123333356666666665443
No 251
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=87.48 E-value=1.3 Score=28.11 Aligned_cols=29 Identities=41% Similarity=0.323 Sum_probs=25.2
Q ss_pred HHHHHHHHHHccc-chHHHHHHHHHHHHHH
Q 006201 457 QQIISVLLQSMKD-VPNVAEKACGALYFLA 485 (657)
Q Consensus 457 ~~il~~l~~~l~d-~~~v~~~a~~al~~l~ 485 (657)
...+|.|++.|.+ ++.++..|+++|.+++
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3568899999986 7999999999999986
No 252
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=87.42 E-value=48 Score=36.11 Aligned_cols=133 Identities=19% Similarity=0.159 Sum_probs=76.0
Q ss_pred HHHHHhcCCC----ChHHHHHHHHHHHHHHhhhcCC-CCCc-----hHHHHHHHhhc----CCChhHHHHHHHHHHHHhh
Q 006201 95 SFILKTLSSP----AHDARSTASQVVAKVAGIELPH-KQWP-----ELIGALLSNIH----QLPPHTKQATLETLGYICE 160 (657)
Q Consensus 95 ~~ll~~l~~~----~~~vr~~aa~~l~~i~~~~~~~-~~~~-----~l~~~l~~~l~----~~~~~~~~~~l~~l~~i~~ 160 (657)
+.++..+.++ .+.+|..+..+++.++...... ..++ ++++.+.+.+. ..+...+...+++|+.+..
T Consensus 396 ~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~ 475 (574)
T smart00638 396 KALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH 475 (574)
T ss_pred HHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC
Confidence 3445555443 4689999999999999865431 2332 56666665543 2344455666777765322
Q ss_pred hccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHH
Q 006201 161 EVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAF 240 (657)
Q Consensus 161 ~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~ 240 (657)
. .....+.+.+. + +...+..+|.+|+.+|..+....+. ..+..+++++.. ...+.++|.+++
T Consensus 476 ~--------~~i~~l~~~l~-~--~~~~~~~iR~~Av~Alr~~a~~~p~-----~v~~~l~~i~~n--~~e~~EvRiaA~ 537 (574)
T smart00638 476 P--------SSIKVLEPYLE-G--AEPLSTFIRLAAILALRNLAKRDPR-----KVQEVLLPIYLN--RAEPPEVRMAAV 537 (574)
T ss_pred h--------hHHHHHHHhcC-C--CCCCCHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHHcC--CCCChHHHHHHH
Confidence 1 11122222222 1 2256788999999999976543221 122344444432 236788998888
Q ss_pred HHHHH
Q 006201 241 ECLVA 245 (657)
Q Consensus 241 ~~l~~ 245 (657)
..|..
T Consensus 538 ~~lm~ 542 (574)
T smart00638 538 LVLME 542 (574)
T ss_pred HHHHh
Confidence 77765
No 253
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=87.23 E-value=33 Score=34.01 Aligned_cols=133 Identities=15% Similarity=0.170 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccc--hhhHhHHHH-----H
Q 006201 106 HDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVE--QDHVNKILT-----A 178 (657)
Q Consensus 106 ~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~--~~~~~~l~~-----~ 178 (657)
..-++.+++.|..++++. | .--.+.++.=+.++.+.+..+|..|++-|-.+|.. +.+. .+.+.+++. .
T Consensus 38 ~k~k~lasq~ip~~fk~f-p-~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~---d~~~rv~d~l~qLLnk~sl~~ 112 (460)
T KOG2213|consen 38 SKEKRLASQFIPRFFKHF-P-SLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG---DALSRVNDVLVQLLNKASLTG 112 (460)
T ss_pred hHHHHHHHHHHHHHHhhC-c-hhhhHHHHhhhccccccchhhHHHHHhccchhccC---chhhhhHHHHHHHHHHHHHHH
Confidence 344678899999999875 6 35567777778888899999999999999888875 2220 122222222 1
Q ss_pred HHhccCCCCCCHHHHHHHHHHHHHHHhhc-hhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHH
Q 006201 179 VVQGMNASESNNDVRLAATRALYNALGFA-QANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAI 246 (657)
Q Consensus 179 l~~~l~~~~~~~~vr~~al~~l~~~~~~~-~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l 246 (657)
+++... -.+..+|..+++-+..-+--+ .+....+.. ..+++.+...+.+-.-+-....+..|..+
T Consensus 113 Lf~~~~--~~D~~irek~l~fi~tKl~~l~~e~L~kevE-~~iv~eikkal~dVtgeef~lfm~~L~~l 178 (460)
T KOG2213|consen 113 LFGQIE--VGDEQIREKVLKFIRTKLITLKGEVLTKEVE-RHIVDEIKKALEDVTGEEFTLFMDILASL 178 (460)
T ss_pred HHhhhh--hhhHHHHHHHHHHHHHHhhcccHHHhhhHHH-HHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 222222 236778888888776643222 222232222 34555555555554444344444444443
No 254
>PF05536 Neurochondrin: Neurochondrin
Probab=87.21 E-value=46 Score=35.69 Aligned_cols=189 Identities=11% Similarity=0.042 Sum_probs=115.3
Q ss_pred chHhhhHHHHHHHHHhhc---CCCchhchHHHHHhhhcCcch-hhHHHHHHHHHHhhcCCCCCcchHHHH-HHHHHHHHH
Q 006201 343 WNIAMAGGTCLGLVARTV---GDDIVPLVMPFVEENITKQEW-RQREAATYAFGSILEGPSPEKLVPLVN-IALNFMLTA 417 (657)
Q Consensus 343 ~~~r~~a~~~L~~l~~~~---~~~~~~~l~~~l~~~l~~~~~-~~r~aal~~l~~i~~~~~~~~~~~~~~-~i~~~l~~~ 417 (657)
...+..|...|..++..- ...-+-.-+|.+.+.+.+.+- ....-++.+|..++.. ++....++. ..++.+...
T Consensus 71 ~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~--~~G~~aLl~~g~v~~L~ei 148 (543)
T PF05536_consen 71 EEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS--PEGAKALLESGAVPALCEI 148 (543)
T ss_pred HHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC--cHhHHHHHhcCCHHHHHHH
Confidence 355666777777776621 111122233444454444333 5667788889988854 344444333 356777777
Q ss_pred hcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCC
Q 006201 418 LMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSS 496 (657)
Q Consensus 418 l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~ 496 (657)
+ .+ ++.....|+.++..+......... ......+..+++.+-+.+.. ....+...|..|..++...........
T Consensus 149 ~-~~-~~~~~E~Al~lL~~Lls~~~~~~~---~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~ 223 (543)
T PF05536_consen 149 I-PN-QSFQMEIALNLLLNLLSRLGQKSW---AEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESP 223 (543)
T ss_pred H-Hh-CcchHHHHHHHHHHHHHhcchhhh---hhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccC
Confidence 6 44 778888999888887776531110 12344566777777666653 445566778888888876521000011
Q ss_pred CCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhccc
Q 006201 497 PLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD 540 (657)
Q Consensus 497 ~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~ 540 (657)
.-......+...+..++++.- ...-|..++...+.+.+..|.
T Consensus 224 ~~~~W~~~l~~gl~~iL~sr~--~~~~R~~al~Laa~Ll~~~G~ 265 (543)
T PF05536_consen 224 PSPKWLSDLRKGLRDILQSRL--TPSQRDPALNLAASLLDLLGP 265 (543)
T ss_pred ChhhhHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhCh
Confidence 223467888888888887655 256677888999999888874
No 255
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=87.11 E-value=1.9 Score=36.94 Aligned_cols=65 Identities=14% Similarity=0.192 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHcccchHHHHHHHHHH
Q 006201 407 VNIALNFMLTALMQDP----NNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGAL 481 (657)
Q Consensus 407 ~~~i~~~l~~~l~~d~----~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al 481 (657)
.+.++..+.+.+ ... +..+...++.+++.+..+...+ .-.-..+++.+++.++ ++..+..|+.+|
T Consensus 80 ~~~i~~~l~~~l-~~~~~~~~~~~~~~~L~~l~s~i~~~~~~--------~i~~~~~l~~~~~~l~-~~~~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQIL-SQSSSEANEELVKAALKCLKSWISWIPIE--------LIINSNLLNLIFQLLQ-SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHH-HHHCHCCHHHHHHHHHHHHHHHTTTS-HH--------HHHSSSHHHHHHHHTT-SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHH-HhhccccHHHHHHHHHHHHHHHHHhCCHH--------HhccHHHHHHHHHHcC-CHHHHHHHHHhC
Confidence 345555555555 221 2888999999999999987521 1111347778888775 455577777764
No 256
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=87.06 E-value=5.6 Score=35.73 Aligned_cols=70 Identities=19% Similarity=0.136 Sum_probs=59.0
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcccccc
Q 006201 95 SFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAV 167 (657)
Q Consensus 95 ~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l 167 (657)
+.+++...+++..+|..|..++..+.+.-+- .=...+|.++.+.+|+++.+|..|...+..+.++. +..+
T Consensus 11 ~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv--nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~-~s~v 80 (187)
T PF12830_consen 11 KNILELCLSSDDSVRLAALQVLELILRQGLV--NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKH-ESLV 80 (187)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC--ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh-HHHH
Confidence 4567778888999999999999999987542 22478899999999999999999999999998887 5544
No 257
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.00 E-value=1.1e+02 Score=39.86 Aligned_cols=348 Identities=11% Similarity=0.074 Sum_probs=183.7
Q ss_pred hhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCCh---hhHHHHHHHHHhhccCC-cHHHHHHHHHHHHH
Q 006201 170 DHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSND---MERDYIMRVVCEATLSP-EVKIRQAAFECLVA 245 (657)
Q Consensus 170 ~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~---~~~~~il~~l~~~~~~~-~~~~~~~~~~~l~~ 245 (657)
+++.-++..++.+++ .+++++..++++|--|+......+..+ ..++.+++.|...++.. +...-..+++.|+.
T Consensus 717 pylp~LM~PLv~aLk---gs~~lvsQgLRtlelcvDnltPefL~~~mepv~~~lmqaLw~~l~~~~~~s~s~~a~rILGK 793 (3550)
T KOG0889|consen 717 PYLPLLMKPLVFALK---GSPELVSQGLRTLELCVDNLTPEFLDPIMEPVRDDLMQALWSHLRPVPNYSYSHRALRILGK 793 (3550)
T ss_pred hhhhhhhhHHHHHhc---CCHHHHHHHHhHHHHHHhcCChHhhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHh
Confidence 455556666677776 688999999999999887654443322 23467888888777653 66778889999999
Q ss_pred HHHHHHHhhHH-----------------------------hHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHhHHHHHh
Q 006201 246 ISSTYYEKLAP-----------------------------YIQDIFNITAKAVRE--DEEPVALQAIEFWSSVCDEEIDI 294 (657)
Q Consensus 246 l~~~~~~~~~~-----------------------------~~~~l~~~~~~~~~~--~~~~v~~~a~~~~~~l~~~~~~~ 294 (657)
+....-.++.+ .+.+++......+.+ .++..|.++...+..........
T Consensus 794 lgG~NRq~l~~~q~l~~~~~~~~~~~l~~s~~~~~~~~~lp~~~~i~sA~~~l~s~~~d~~~~~qa~~~l~~~~~~~~~~ 873 (3550)
T KOG0889|consen 794 LGGRNRQFLKRPQDLEEIDEDDIDIRLVFSFKGLAHPLLLPLSKLIRSAFDALVSPNSDPFYRKQAFKYLRCDLLLMVNL 873 (3550)
T ss_pred hcCcchhhcccccccccccCccccceEEEeccccCccccCchHHHHHHHHHHHhCccCCcchHHHHHHHHHHHHHHHHhh
Confidence 87654332221 022344444444432 45667777776554433322110
Q ss_pred h--------------h--------hcCCCCCCCCCCchhhHH-HhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHH
Q 006201 295 L--------------E--------EYGGDFSGDSDIPCFYFI-KHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGT 351 (657)
Q Consensus 295 ~--------------~--------~~~~~~~~~~~~~~~~~~-~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~ 351 (657)
. . .......+.....+..+. +..+...+-.++-.+... +.|..|..
T Consensus 874 ~~~~~~~~~~l~~~~~~~i~~~~e~~~~n~~~~~~~~~~~~a~~~~~~~~l~~~~~a~~~~-----------elr~~a~~ 942 (3550)
T KOG0889|consen 874 SADFKSSIRQLLTLVVWSIDLRLECCEINLDLTERYKSQDYSDRSIFVNALISLFYATSCK-----------ELRDEAQD 942 (3550)
T ss_pred hccchhhHHHHHHhhcchHHHhhHhhhccccccccccccchhHHHHHHHHHHHHHHHHhhH-----------HHHhhhHH
Confidence 0 0 000000000000000011 000000000000000000 12222222
Q ss_pred HHHHHHhh---------cC----------CC-----c--hhchHHHHHhhhcCcchhhHHHHHHHHHHhhcC-------C
Q 006201 352 CLGLVART---------VG----------DD-----I--VPLVMPFVEENITKQEWRQREAATYAFGSILEG-------P 398 (657)
Q Consensus 352 ~L~~l~~~---------~~----------~~-----~--~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~-------~ 398 (657)
.+..+... .+ .. . ...+++.|.+.+...+...+.++..++..+.+. .
T Consensus 943 ~~~~il~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~lD~~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~ 1022 (3550)
T KOG0889|consen 943 FLEAILRHFALHGVVLYTGSNQLKHSNFGSNLQYKKMLDPSTFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSP 1022 (3550)
T ss_pred HHHHHHHHHHHHHHHHhhcchhccccccccccccccccCHHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCc
Confidence 22222211 11 11 0 124566677777777888889999888876542 1
Q ss_pred CCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-c---hH-H
Q 006201 399 SPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-V---PN-V 473 (657)
Q Consensus 399 ~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~---~~-v 473 (657)
......|....+++.+.... .++...-|...+..++-+.+..+. ...-++...++..+...+.| . +. -
T Consensus 1023 ~~~~~lpi~~~l~~k~~~lC-y~~~wy~k~gG~~gI~~l~~~~~~------~~l~d~~~d~~~~l~fvl~d~~~e~~~~~ 1095 (3550)
T KOG0889|consen 1023 ERAFKLPMFEYLLEKLCHLC-YDSTWYAKDGGVNGIKCLIESMPS------LWLLDFQVDILKALFFVLKDTESEVSSLP 1095 (3550)
T ss_pred chhhccchHHHHHHHHHHHh-ccHhHHHHcCCCceeeeehhhchH------HHHHHHHHHHhhhHHHhhcCCccccccch
Confidence 12334567788888888888 888888888888777777776541 12334556666666666654 1 11 1
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccc
Q 006201 474 AEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDE 541 (657)
Q Consensus 474 ~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~ 541 (657)
...+-..+..+...+-..+.....-......++..+..-+-+++ ..+|+.+..+|..+.+..+..
T Consensus 1096 ~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN---~~VR~~~~~~L~~i~~~s~~~ 1160 (3550)
T KOG0889|consen 1096 LDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPN---SDVREFSQKLLRLISELSGKS 1160 (3550)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCc---hHHHHHHHHHHHHHHHHcCCc
Confidence 22333333333332210000111122345566666666666654 589999999999999988754
No 258
>PF05536 Neurochondrin: Neurochondrin
Probab=86.88 E-value=48 Score=35.56 Aligned_cols=241 Identities=12% Similarity=0.024 Sum_probs=124.7
Q ss_pred chHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccch-hhHhHHHHHH-HhccCC---C-C-CCHHHHHHHHHHHHH
Q 006201 130 PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQ-DHVNKILTAV-VQGMNA---S-E-SNNDVRLAATRALYN 202 (657)
Q Consensus 130 ~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~-~~~~~l~~~l-~~~l~~---~-~-~~~~vr~~al~~l~~ 202 (657)
+.-+......+++.+...|..|+..+..+++.-+...... ...+.+=+.| -..|++ + + +....+..|+..+..
T Consensus 4 ~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 4 SASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred hHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 4566778888888888889999999999888542111100 1112221122 223332 1 1 234556677777777
Q ss_pred HHhhchhhcCChhhHHHHHHHHHhhccCCcH-HHHHHHHHHHHHHHHHHHHhhHHhHH-HHHHHHHHHHhcCChHHHHHH
Q 006201 203 ALGFAQANFSNDMERDYIMRVVCEATLSPEV-KIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQA 280 (657)
Q Consensus 203 ~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~v~~~a 280 (657)
+.. .++....+ ..-.-++.+...+...+. ++...+++||..++. +++-....+. +.++.+...+.+ .+.....+
T Consensus 84 f~~-~~~~a~~~-~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~A 159 (543)
T PF05536_consen 84 FCR-DPELASSP-QMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPN-QSFQMEIA 159 (543)
T ss_pred HcC-ChhhhcCH-HHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHh-CcchHHHH
Confidence 554 12211111 112345666666655444 888899999999994 4433333332 334444444443 55567778
Q ss_pred HHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhc
Q 006201 281 IEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV 360 (657)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~ 360 (657)
+..|..++..... ..+......+..+++.+...++...+ +.+..+...|..+....
T Consensus 160 l~lL~~Lls~~~~---------------~~~~~~~~~l~~il~~La~~fs~~~~---------~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 160 LNLLLNLLSRLGQ---------------KSWAEDSQLLHSILPSLARDFSSFHG---------EDKFELLEFLSAFLPRS 215 (543)
T ss_pred HHHHHHHHHhcch---------------hhhhhhHHHHHHHHHHHHHHHHhhcc---------chHHHHHHHHHHhcCcC
Confidence 8888887653210 00011112222344444333332110 11223334444443332
Q ss_pred C---------CCchhchHHHHHhhhcCc-chhhHHHHHHHHHHhhcCC
Q 006201 361 G---------DDIVPLVMPFVEENITKQ-EWRQREAATYAFGSILEGP 398 (657)
Q Consensus 361 ~---------~~~~~~l~~~l~~~l~~~-~~~~r~aal~~l~~i~~~~ 398 (657)
+ ....+.+...+...+++. ....|..++.+.+++.+..
T Consensus 216 ~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~ 263 (543)
T PF05536_consen 216 PILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLL 263 (543)
T ss_pred CccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 1 123445556666666553 4678999988888776643
No 259
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=86.62 E-value=2.6 Score=30.79 Aligned_cols=56 Identities=20% Similarity=0.240 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHhhcCCCCCcchHHHH--HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhh
Q 006201 383 QREAATYAFGSILEGPSPEKLVPLVN--IALNFMLTALMQDPNNHVKDTTAWTLGRMFEFL 441 (657)
Q Consensus 383 ~r~aal~~l~~i~~~~~~~~~~~~~~--~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~ 441 (657)
...++++|+|.++... . -.++++ .+++.+++...+++..-+|.+++++++-++...
T Consensus 3 ~lKaaLWaighIgss~--~-G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSP--L-GIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHHhHhcCh--H-HHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 4678999999998742 2 223343 477888876636788999999999999998864
No 260
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=85.88 E-value=1.9 Score=27.56 Aligned_cols=41 Identities=24% Similarity=0.290 Sum_probs=28.4
Q ss_pred HHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 006201 390 AFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTL 434 (657)
Q Consensus 390 ~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l 434 (657)
+++.+.+.- +..+. .+.+...+...+ .|+++.||.+|..++
T Consensus 2 ~l~~iv~~d-p~ll~--~~~v~~~i~~rl-~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKD-PTLLD--SSDVQSAIIRRL-SDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcC-ccccc--hHHHHHHHHHHh-cCCChHHHHHHHHHC
Confidence 456666542 23222 246778888899 999999999998653
No 261
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.71 E-value=66 Score=36.07 Aligned_cols=94 Identities=15% Similarity=0.184 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhccccchhhhHHHHHHHHHHHHH---HhcccccHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHH
Q 006201 503 QEIVQALLTVTHREDAGESRLRTAAYETLNEVV---RCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQG 579 (657)
Q Consensus 503 ~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~---~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 579 (657)
..|+.....++...+ ...|..++++++.-. ..-++.+.|.+.+.+|.+++.+.. +++ -+-.
T Consensus 802 ~kIl~r~~~~LS~e~---l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~---------k~~----L~v~ 865 (1014)
T KOG4524|consen 802 LKILGRGIHLLSHES---LRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLC---------KDP----LIVQ 865 (1014)
T ss_pred HHHHHHHHHHhcchh---HHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhc---------Cch----HHHH
Confidence 344444455555543 567778888886543 334456888999999999888764 222 1233
Q ss_pred HHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHH
Q 006201 580 LLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVF 617 (657)
Q Consensus 580 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l 617 (657)
.+++|+..++...|+-- -+.+++.++|.+-..+
T Consensus 866 ~a~~~i~~m~~~sgDFv-----~sR~l~dvlP~l~~~~ 898 (1014)
T KOG4524|consen 866 RAFSCIEQMGKYSGDFV-----ASRFLEDVLPWLKHLC 898 (1014)
T ss_pred HHHHHHHHHHHHhhhHH-----HHHHHHHHHHHHHHHH
Confidence 68999999999887631 1145555555544333
No 262
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=85.66 E-value=18 Score=29.61 Aligned_cols=74 Identities=14% Similarity=0.157 Sum_probs=50.6
Q ss_pred CchhchHHHHHhhhc-CcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhh
Q 006201 363 DIVPLVMPFVEENIT-KQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFL 441 (657)
Q Consensus 363 ~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~ 441 (657)
.+++.++|++...+. +.....|-++++.++.++.... --...+..++..+.+.. ..... ...++-++..+....
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~--L~~~~l~~l~~~i~~~~-~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP--LSDEVLNALMESILKNW-TQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC--CcHHHHHHHHHHHHhcc-ccchh--HHHHHHHHHHHHHcc
Confidence 567889999999988 6667889999999999997642 22334555555555544 33333 456777887777654
No 263
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=85.65 E-value=40 Score=33.45 Aligned_cols=185 Identities=11% Similarity=0.174 Sum_probs=108.3
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHhhhcCC----------CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcc--c
Q 006201 97 ILKTLSSPAHDARSTASQVVAKVAGIELPH----------KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVS--S 164 (657)
Q Consensus 97 ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~----------~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~--~ 164 (657)
|+..|..-+-+.|+.++.+.+.+.+..... ..||+++..|+....+++.... +-..+...++.-. .
T Consensus 81 Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~--~g~mlRec~k~e~l~~ 158 (335)
T PF08569_consen 81 LIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALN--CGDMLRECIKHESLAK 158 (335)
T ss_dssp HHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHH--HHHHHHHHTTSHHHHH
T ss_pred HHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccch--HHHHHHHHHhhHHHHH
Confidence 444444444555666666666665554221 3568888888888776654221 2222333222100 0
Q ss_pred cccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchh---hcCChhhHHHHHHHHHhhccCCcHHHHHHHHH
Q 006201 165 DAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQA---NFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241 (657)
Q Consensus 165 ~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~---~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~ 241 (657)
..+..+ .+-.+.+... .++-+|-..|+.++..++.--+. .+. ..+.+.++.....++++++-=.|..+++
T Consensus 159 ~iL~~~----~f~~ff~~~~--~~~Fdiasdaf~t~~~llt~hk~~~a~fl-~~n~d~ff~~~~~Ll~s~NYvtkrqslk 231 (335)
T PF08569_consen 159 IILYSE----CFWKFFKYVQ--LPNFDIASDAFSTFKELLTRHKKLVAEFL-SNNYDRFFQKYNKLLESSNYVTKRQSLK 231 (335)
T ss_dssp HHHTSG----GGGGHHHHTT--SSSHHHHHHHHHHHHHHHHSSHHHHHHHH-HHTHHHHHHHHHHHCT-SSHHHHHHHHH
T ss_pred HHhCcH----HHHHHHHHhc--CCccHhHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHHHHHHccCCCeEeehhhHH
Confidence 011111 2223445555 57889988888888886642111 111 1123567777778888899999999999
Q ss_pred HHHHHHHHH--HHhhHHhH--HHHHHHHHHHHhcCChHHHHHHHHHHHHHhHH
Q 006201 242 CLVAISSTY--YEKLAPYI--QDIFNITAKAVREDEEPVALQAIEFWSSVCDE 290 (657)
Q Consensus 242 ~l~~l~~~~--~~~~~~~~--~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~ 290 (657)
.|+++.... ...+..|+ +.-+..++..+.+....++..|+...-.++..
T Consensus 232 LL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 232 LLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 999998653 34455666 36788888899999999999999888777753
No 264
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=85.59 E-value=1.7 Score=33.27 Aligned_cols=57 Identities=19% Similarity=0.235 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhh
Q 006201 382 RQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFL 441 (657)
Q Consensus 382 ~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~ 441 (657)
..|++++.+|++++... +-.+.++++.++..|-+.. .| ...|+.++-.+++.|-..-
T Consensus 4 ~~rH~~VLGL~Alv~a~-Py~vP~w~P~~l~~La~~~-~~-~~~I~~tvk~tl~eFkrtH 60 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAF-PYDVPPWMPEVLEELARHA-ND-PQPIRTTVKKTLSEFKRTH 60 (90)
T ss_dssp HHHHHHHHHHHHHHTT--S--SS-HHHHHHHHHHTTS-SS--SSHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHc-CCCCcccHHHHHHHHHHHh-CC-CchHHHHHHHHHHHHHHhC
Confidence 57999999999999886 6777789999888876666 65 6788999999998887754
No 265
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=85.13 E-value=10 Score=35.48 Aligned_cols=73 Identities=14% Similarity=0.044 Sum_probs=43.6
Q ss_pred hHHHHHHHhhcCC-ChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHh
Q 006201 131 ELIGALLSNIHQL-PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALG 205 (657)
Q Consensus 131 ~l~~~l~~~l~~~-~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 205 (657)
-+.|++....++. -+..|-.++.+++.+++.-+++.+.---..+++|..+..+. ..+.-.|..|.-++..++.
T Consensus 95 yLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me--~GselSKtvAtfIlqKIL~ 168 (262)
T PF04078_consen 95 YLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIME--FGSELSKTVATFILQKILL 168 (262)
T ss_dssp GGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHH--HS-HHHHHHHHHHHHHHHH
T ss_pred hehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHH--hccHHHHHHHHHHHHHHHc
Confidence 4556664433332 35678899999999988543343311123578898888887 4566667777777777654
No 266
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=84.87 E-value=1.5 Score=27.52 Aligned_cols=28 Identities=21% Similarity=0.456 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 006201 410 ALNFMLTALMQDPNNHVKDTTAWTLGRMF 438 (657)
Q Consensus 410 i~~~l~~~l~~d~~~~vr~~a~~~l~~l~ 438 (657)
.++.+++.+ +++++.++..+++++++++
T Consensus 13 ~i~~L~~ll-~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELL-KSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHH-cCCCHHHHHHHHHHHHHHc
Confidence 578888888 8889999999999999876
No 267
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.66 E-value=84 Score=37.28 Aligned_cols=103 Identities=15% Similarity=0.083 Sum_probs=71.8
Q ss_pred hhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCc
Q 006201 374 ENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQ 453 (657)
Q Consensus 374 ~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 453 (657)
..+.-.|...|.-|+..++.+.+..+.+....+++.-.....+.. .|++..||.....++..+...+. ....
T Consensus 48 kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~-~d~~~~VR~~t~~v~s~l~t~lk-------k~ls 119 (1312)
T KOG0803|consen 48 KKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLI-IDEDRTVRLLTHDVFSKLLTKLK-------KKLS 119 (1312)
T ss_pred HHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHh-cCccHHHHHHHHHHHHHHHHHHH-------HHhh
Confidence 344445667888899999998876433333332333333333455 89999999999999999999886 2557
Q ss_pred ccHHHHHHHHHHHccc-chHHHHHHHHHHHHH
Q 006201 454 GNCQQIISVLLQSMKD-VPNVAEKACGALYFL 484 (657)
Q Consensus 454 ~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l 484 (657)
+|++.+++..+-+..| ...|...|..++...
T Consensus 120 p~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~ 151 (1312)
T KOG0803|consen 120 PFLKSLIPPWLGGQFDLDYPVSEAAKASFKDG 151 (1312)
T ss_pred HHHHhhhhhhhheecccchHHHHHHHHHHHhh
Confidence 8999999999887776 456666665555543
No 268
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=84.48 E-value=19 Score=30.19 Aligned_cols=75 Identities=17% Similarity=0.146 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHH-HHHHHHHHHccc----chHHHHHHHHHHH
Q 006201 408 NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQ-QIISVLLQSMKD----VPNVAEKACGALY 482 (657)
Q Consensus 408 ~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~-~il~~l~~~l~d----~~~v~~~a~~al~ 482 (657)
...+..|.+.+ ++++|.++..|+.++..+.+.++.. +...+.. ..+..+.+.+.+ ++.|+..+...+.
T Consensus 36 k~a~raL~krl-~~~n~~vql~AL~lLd~~vkNcg~~------f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~ 108 (133)
T cd03561 36 KEAARAIRKKI-KYGNPHVQLLALTLLELLVKNCGKP------FHLQVADKEFLLELVKIAKNSPKYDPKVREKALELIL 108 (133)
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHhCChH------HHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 45678888899 9999999999999999999988621 2222222 344445555442 5789999999998
Q ss_pred HHHhhcc
Q 006201 483 FLAQGFE 489 (657)
Q Consensus 483 ~l~~~~~ 489 (657)
.....+.
T Consensus 109 ~W~~~f~ 115 (133)
T cd03561 109 AWSESFG 115 (133)
T ss_pred HHHHHhc
Confidence 8887764
No 269
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=84.01 E-value=2.9 Score=36.26 Aligned_cols=130 Identities=15% Similarity=0.092 Sum_probs=83.2
Q ss_pred hHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHH--HHHHHHHHHHhcC-
Q 006201 344 NIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV--NIALNFMLTALMQ- 420 (657)
Q Consensus 344 ~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~--~~i~~~l~~~l~~- 420 (657)
++|..+.-++.++....++.+...+-+++...+...+....-.++.++..+..+. ++.....+ +.+++.++... .
T Consensus 20 ~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~-~dv~~~l~~~eg~~~~l~~~~-~~ 97 (157)
T PF11701_consen 20 EVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGP-PDVGSELFLSEGFLESLLPLA-SR 97 (157)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTT-HHHHHHHCCTTTHHHHHHHHH-H-
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCC-HHHHHHHHhhhhHHHHHHHHH-hc
Confidence 5788888888888766677777777788888777666556667778888877764 23222211 23445555555 4
Q ss_pred -CCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc--chH-HHHHHHHHHHH
Q 006201 421 -DPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--VPN-VAEKACGALYF 483 (657)
Q Consensus 421 -d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~-v~~~a~~al~~ 483 (657)
.++..+..+++.++..-+..-. .........++.|.+.++. +.. +|..|+-.|..
T Consensus 98 ~~~~~~~~~~~lell~aAc~d~~--------~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 98 KSKDRKVQKAALELLSAACIDKS--------CRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CTS-HHHHHHHHHHHHHHTTSHH--------HHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHccHH--------HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 6778888888888865554321 2344556667777777752 344 77777766653
No 270
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=83.87 E-value=21 Score=30.37 Aligned_cols=76 Identities=17% Similarity=0.123 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc--chHHHHHHHHHHHHHH
Q 006201 408 NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--VPNVAEKACGALYFLA 485 (657)
Q Consensus 408 ~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~~l~ 485 (657)
...+..|.+.+ ++.++.|...|+.++..+.+.++... ...-.-..++..+.+.+.+ ++.|+......+..-.
T Consensus 36 k~a~ral~KRl-~~~n~~v~l~AL~LLe~~vkNCG~~f-----h~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 36 KDCLKAIMKRL-NHKDPNVQLRALTLLDACAENCGKRF-----HQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHCCHHH-----HHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 55678888999 99999999999999999999886311 1111224556666666665 6889999988888887
Q ss_pred hhcc
Q 006201 486 QGFE 489 (657)
Q Consensus 486 ~~~~ 489 (657)
+.+.
T Consensus 110 ~~f~ 113 (144)
T cd03568 110 DEFK 113 (144)
T ss_pred HHhC
Confidence 7764
No 271
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=83.21 E-value=13 Score=30.53 Aligned_cols=73 Identities=14% Similarity=0.205 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHcccchHHHHHHHHHHHH
Q 006201 405 PLVNIALNFMLTALMQ-DPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYF 483 (657)
Q Consensus 405 ~~~~~i~~~l~~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~ 483 (657)
.++..++|.+.+.+ + ...+..|.++.-.++.++...+ ..++.+..++..+.+....... ...+..++..
T Consensus 2 ~~l~~lLP~l~~~L-~~s~~~d~~~a~ymIl~~La~k~~--------L~~~~l~~l~~~i~~~~~~~~~-~~~~l~~L~~ 71 (121)
T PF12397_consen 2 DILPRLLPFLLKGL-KSSSSPDLQAAAYMILSVLASKVP--------LSDEVLNALMESILKNWTQETV-QRQALICLIV 71 (121)
T ss_pred cHHHHHHHHHHHHH-ccCCcHHHHHHHHHHHHHHHhhcC--------CcHHHHHHHHHHHHhccccchh-HHHHHHHHHH
Confidence 35788999999999 6 7889999999999999999875 4556666666666666553222 4567777777
Q ss_pred HHhh
Q 006201 484 LAQG 487 (657)
Q Consensus 484 l~~~ 487 (657)
+++.
T Consensus 72 l~q~ 75 (121)
T PF12397_consen 72 LCQS 75 (121)
T ss_pred HHHc
Confidence 7764
No 272
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=83.05 E-value=3.1 Score=33.69 Aligned_cols=75 Identities=15% Similarity=0.032 Sum_probs=53.0
Q ss_pred ccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 006201 36 PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQV 115 (657)
Q Consensus 36 ~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~ 115 (657)
-..+..|+.+|.. +.++.+-..|+.-++.+++.++.-+ .--.+-..|..+.++|.++++.||..|-.+
T Consensus 42 ~~llk~L~~lL~~-s~d~~~laVac~Dig~~vr~~p~gr-----------~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~a 109 (119)
T PF11698_consen 42 FELLKKLIKLLDK-SDDPTTLAVACHDIGEFVRHYPNGR-----------NIIEKLGAKERVMELMNHEDPEVRYEALLA 109 (119)
T ss_dssp GHHHHHHHHHH-S-HHHHHHHHHHHHHHHHHHHH-GGGH-----------HHHHHHSHHHHHHHHTS-SSHHHHHHHHHH
T ss_pred cHHHHHHHHHHcc-CCCcceeehhhcchHHHHHHChhHH-----------HHHHhcChHHHHHHHhcCCCHHHHHHHHHH
Confidence 4567778888865 3477777788888888887653211 011334578889999999999999999999
Q ss_pred HHHHHhh
Q 006201 116 VAKVAGI 122 (657)
Q Consensus 116 l~~i~~~ 122 (657)
+..+...
T Consensus 110 vQklm~~ 116 (119)
T PF11698_consen 110 VQKLMVN 116 (119)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988764
No 273
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.99 E-value=48 Score=32.25 Aligned_cols=212 Identities=11% Similarity=0.079 Sum_probs=109.7
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh--hccCcCCCccCCcccHH-HHHHHHHHHccc--chHHHHHHHHHHHH
Q 006201 409 IALNFMLTALMQDPNNHVKDTTAWTLGRMFEF--LHGSTLETPIINQGNCQ-QIISVLLQSMKD--VPNVAEKACGALYF 483 (657)
Q Consensus 409 ~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~~~~~~~~~-~il~~l~~~l~d--~~~v~~~a~~al~~ 483 (657)
.+++.++..+....+.++.+...|++.-+... +..+..+.......+.+ .++..|++.++- +|.+-..++.+|..
T Consensus 189 ~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~ 268 (461)
T KOG4199|consen 189 KILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKA 268 (461)
T ss_pred hHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHH
Confidence 35677776663455556766777887655432 10000000011112222 246677777663 47777777777776
Q ss_pred HHhhccCCCCCCCCCchhHHHH-----HHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccc-cHHHHH--HHHHHHHH
Q 006201 484 LAQGFEDAISPSSPLTPFFQEI-----VQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDE-TAPMVM--QLVPLIMM 555 (657)
Q Consensus 484 l~~~~~~~~~~~~~l~~~~~~i-----~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~-~~~~~~--~l~~~l~~ 555 (657)
+.-. ..+...+ +..|++++.+.+ +...|+.+=.+++.+-...|.+ ....+. .-.+.++.
T Consensus 269 lAVr-----------~E~C~~I~e~GGl~tl~~~i~d~n--~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~ 335 (461)
T KOG4199|consen 269 LAVR-----------DEICKSIAESGGLDTLLRCIDDSN--EQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIIT 335 (461)
T ss_pred HHHH-----------HHHHHHHHHccCHHHHHHHHhhhc--hhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHH
Confidence 6432 0122222 456788887755 4566766666777776666654 333322 34555555
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHH-HHHHHHHHHHcc--cCCcchhhHHHHH
Q 006201 556 ELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYAD-QMMGLFLRVFAI--RSATAHEEAMLAI 632 (657)
Q Consensus 556 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-~i~~~l~~~l~~--~~~~v~~~~~~~l 632 (657)
....+. +++ .+...++.+++.++-..... -..+++ ..-...++.++. ....++..+-.++
T Consensus 336 l~~~h~-------~~p----~Vi~~~~a~i~~l~LR~pdh------sa~~ie~G~a~~avqAmkahP~~a~vQrnac~~I 398 (461)
T KOG4199|consen 336 LALRHS-------DDP----LVIQEVMAIISILCLRSPDH------SAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMI 398 (461)
T ss_pred HHHHcC-------CCh----HHHHHHHHHHHHHHhcCcch------HHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 555442 233 34556788888887665544 222222 122233333332 1345666666666
Q ss_pred HHHHHHhchhhhhccccc
Q 006201 633 GALAYATGLCHHRRCCWG 650 (657)
Q Consensus 633 ~~l~~~~g~~f~~y~~~~ 650 (657)
-.++....+.-.+++.++
T Consensus 399 RNiv~rs~~~~~~~l~~G 416 (461)
T KOG4199|consen 399 RNIVVRSAENRTILLANG 416 (461)
T ss_pred HHHHHhhhhccchHHhcc
Confidence 666655444444444443
No 274
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=82.95 E-value=17 Score=27.68 Aligned_cols=56 Identities=21% Similarity=0.406 Sum_probs=46.7
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006201 229 LSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFW 284 (657)
Q Consensus 229 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~ 284 (657)
...+.++|..+++|+..++...++.+..--+.++..+-....+.++.+...|++.+
T Consensus 28 ~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 28 NNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 44788999999999999999999888777778888887777777888888887654
No 275
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.86 E-value=1.1e+02 Score=36.13 Aligned_cols=227 Identities=11% Similarity=0.083 Sum_probs=117.7
Q ss_pred CCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhc---CC
Q 006201 50 EKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIEL---PH 126 (657)
Q Consensus 50 ~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~---~~ 126 (657)
++-.++|.-....+-+.++.... |.--+.....++.+.+...-......+-+..-.++..|..... |.
T Consensus 853 ~~~~evr~~sl~~l~silet~ge---------~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~ 923 (1610)
T KOG1848|consen 853 SRGVEVRISSLEALVSILETVGE---------HLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPT 923 (1610)
T ss_pred CccceeeHHHHHHHHHHHhccch---------hhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCCh
Confidence 34455555555666666665432 2111232333333333333333344555566666666665433 32
Q ss_pred CCCchHHHHHHHhhc-CCChhHHHHHHHHHHHHhhhcccccc--c---h------------h----hHhHH----HHHHH
Q 006201 127 KQWPELIGALLSNIH-QLPPHTKQATLETLGYICEEVSSDAV--E---Q------------D----HVNKI----LTAVV 180 (657)
Q Consensus 127 ~~~~~l~~~l~~~l~-~~~~~~~~~~l~~l~~i~~~~~~~~l--~---~------------~----~~~~l----~~~l~ 180 (657)
.....+++.+..... ..|.++-..|+..+..+.+....... + . + .-+.+ +..+.
T Consensus 924 sci~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~ 1003 (1610)
T KOG1848|consen 924 SCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLA 1003 (1610)
T ss_pred HHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHH
Confidence 334556666665543 34555655666666555444311000 0 0 0 00222 22333
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhcc-----C----CcHHH----HHHHHHHHHHHH
Q 006201 181 QGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATL-----S----PEVKI----RQAAFECLVAIS 247 (657)
Q Consensus 181 ~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~-----~----~~~~~----~~~~~~~l~~l~ 247 (657)
.+.. |..++||..|+++|.+++.--...+.......-+.+.+.+++. . +..++ -..++.++..++
T Consensus 1004 ~~~~--dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIa 1081 (1610)
T KOG1848|consen 1004 DLCE--DSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIA 1081 (1610)
T ss_pred HHhc--cchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHH
Confidence 3444 7889999999999999876433333332211222333333332 0 11222 234777888888
Q ss_pred HHHHHhhHHh---------HHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 006201 248 STYYEKLAPY---------IQDIFNITAKAVREDEEPVALQAIEFWSSV 287 (657)
Q Consensus 248 ~~~~~~~~~~---------~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l 287 (657)
+.+++.+... ...++.++.....+..+++...++..+-++
T Consensus 1082 klf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qel 1130 (1610)
T KOG1848|consen 1082 KLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQEL 1130 (1610)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHH
Confidence 8888776543 235777777777788888888777655443
No 276
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=82.44 E-value=30 Score=29.46 Aligned_cols=74 Identities=8% Similarity=0.012 Sum_probs=56.2
Q ss_pred chHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHH--HHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhc
Q 006201 367 LVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV--NIALNFMLTALMQD-PNNHVKDTTAWTLGRMFEFLH 442 (657)
Q Consensus 367 ~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~--~~i~~~l~~~l~~d-~~~~vr~~a~~~l~~l~~~~~ 442 (657)
..+..|...+.+.+.++..-|+..|..++..|+ ..+...+ ...+..+.+.+ .+ .++.|+..++.++..++..+.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG-~~fh~evask~Fl~eL~kl~-~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCG-KRFHQEVASRDFTQELKKLI-NDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC-HHHHHHHhhHHHHHHHHHHh-cccCCHHHHHHHHHHHHHHHHHhC
Confidence 445556667778888898999999999999985 3332222 24566677777 65 799999999999999999886
No 277
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=81.86 E-value=7 Score=30.21 Aligned_cols=61 Identities=20% Similarity=0.132 Sum_probs=47.3
Q ss_pred CcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHhh
Q 006201 378 KQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDP--NNHVKDTTAWTLGRMFEF 440 (657)
Q Consensus 378 ~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~--~~~vr~~a~~~l~~l~~~ 440 (657)
+++|..|+-|...++.|+...+ ......-+.+...+.+.+ .|+ +...++-|+..|..++..
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~-~~~~~L~~Ri~~tl~k~l-~d~~~~~~t~YGAi~gL~~lG~~ 79 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFS-SSYPTLQPRITRTLLKAL-LDPKKPLGTHYGAIVGLSALGPE 79 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHH
Confidence 4579999999999999998763 444455667888888888 765 456788888888887654
No 278
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=81.85 E-value=46 Score=31.26 Aligned_cols=114 Identities=17% Similarity=0.181 Sum_probs=67.4
Q ss_pred hcCCChhHHHHHHHHHHHHhhhcccccc-c-------hhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhc
Q 006201 140 IHQLPPHTKQATLETLGYICEEVSSDAV-E-------QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANF 211 (657)
Q Consensus 140 l~~~~~~~~~~~l~~l~~i~~~~~~~~l-~-------~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~ 211 (657)
+.++++.+.+.++.+...+.... -..+ . -..+..+-..+++.+. +.++.||..++|.+..++.......
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~-~~~i~~~~~~~~~W~~~~~lK~~Il~~~~--~~~~gvk~~~iKFle~vIl~qs~~~ 78 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLV-FRWICVNPSDEQLWESMNELKDRILSLWD--SENPGVKLAAIKFLERVILVQSPGS 78 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHH-HHHHS--HHHHHHHHHHHHHHHHHHHGGG--SSSHHHHHHHHHHHHHHHHHTS---
T ss_pred CCCCcHHHHHHHHHHHHHHHHHH-HHHHcCCchHHHHHHHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHhcCCCC
Confidence 34556666666666666654442 1111 0 1234555556667766 5688999999999999886432110
Q ss_pred C---------Ch-------------------hhHHHHHHHHHhhccCC--cHHHHHHHHHHHHHHHHHHHHhhHH
Q 006201 212 S---------ND-------------------MERDYIMRVVCEATLSP--EVKIRQAAFECLVAISSTYYEKLAP 256 (657)
Q Consensus 212 ~---------~~-------------------~~~~~il~~l~~~~~~~--~~~~~~~~~~~l~~l~~~~~~~~~~ 256 (657)
. .+ .+...++..++..+.++ +..+..+++.+|..++...|.+...
T Consensus 79 ~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~ 153 (239)
T PF11935_consen 79 SDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQFMSR 153 (239)
T ss_dssp TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHH
T ss_pred CCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHHHHH
Confidence 0 00 01123667777766554 4777888999999999988766543
No 279
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=81.59 E-value=4.3 Score=32.12 Aligned_cols=61 Identities=15% Similarity=0.303 Sum_probs=50.5
Q ss_pred CcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHcc
Q 006201 401 EKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK 468 (657)
Q Consensus 401 ~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~ 468 (657)
+.+.++++.++..+..++ .+-.+.||..++..+.-+.+.+++. ....+..++++..+..+.
T Consensus 3 ~~l~p~~~~l~~~i~sAM-THi~~~Ir~dsl~~L~~lL~~~p~~------~~~~~~~kil~~f~~ll~ 63 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAM-THISPDIREDSLKFLDLLLEHAPDE------LCSGGWVKILPNFLDLLG 63 (102)
T ss_pred HHHHhHHHHHHHHHHHHH-HhCCHHHHHhHHHHHHHHHHHCChH------hHhhhHHHHHHHHHHHHC
Confidence 457789999999999999 9999999999999999999998731 245677777777777766
No 280
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=81.45 E-value=47 Score=31.10 Aligned_cols=204 Identities=11% Similarity=0.074 Sum_probs=106.4
Q ss_pred hccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCC
Q 006201 227 ATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDS 306 (657)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~ 306 (657)
..+..+++.....++.|..++.+.. ...+.+++.+....+....+.+..+++.+..+-....
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~----~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-------------- 70 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN----VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAND-------------- 70 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc----cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc--------------
Confidence 4456788888888888888886541 2333445444444444555554455555555544321
Q ss_pred CCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhh-cCcchhhHH
Q 006201 307 DIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENI-TKQEWRQRE 385 (657)
Q Consensus 307 ~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l-~~~~~~~r~ 385 (657)
..+ +.+..++..+...+.... -+++..|....+...++..++...++ --+.+++.+...+ .+.+...+-
T Consensus 71 --r~f----~~L~~~L~~~~~r~~~~~---~~~~~~~~~~i~~a~s~~~ic~~~p~-~g~~ll~~ls~~L~~~~~~~~~a 140 (234)
T PF12530_consen 71 --RHF----PFLQPLLLLLILRIPSSF---SSKDEFWECLISIAASIRDICCSRPD-HGVDLLPLLSGCLNQSCDEVAQA 140 (234)
T ss_pred --hHH----HHHHHHHHHHHhhccccc---CCCcchHHHHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHhccccHHHHH
Confidence 011 222222222111111111 11234577777777888888888776 4455666666666 555667777
Q ss_pred HHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHH
Q 006201 386 AATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQ 465 (657)
Q Consensus 386 aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~ 465 (657)
.++.++..+++.. .++ +......+.+.+..+..|.|-..-+..++-+.....+ ......+...++..+.+
T Consensus 141 lale~l~~Lc~~~---vvd--~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~-----~e~~~~~~~~~l~~lW~ 210 (234)
T PF12530_consen 141 LALEALAPLCEAE---VVD--FYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVD-----SEEYEELKRQILQLLWE 210 (234)
T ss_pred HHHHHHHHHHHHh---hcc--HHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCC-----hhhhhHHHHHHHHHHHh
Confidence 7778888887542 111 2333445555553556666665544333322221110 01223345555666655
Q ss_pred Hcc
Q 006201 466 SMK 468 (657)
Q Consensus 466 ~l~ 468 (657)
...
T Consensus 211 ~~~ 213 (234)
T PF12530_consen 211 YTS 213 (234)
T ss_pred hcc
Confidence 554
No 281
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=81.13 E-value=6.5 Score=35.53 Aligned_cols=67 Identities=15% Similarity=0.064 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHcccCCcchhhHHHHHHHHHHHhc-hhhhhccccccc
Q 006201 580 LLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATG-LCHHRRCCWGLM 652 (657)
Q Consensus 580 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~~~~l~~l~~~~g-~~f~~y~~~~~~ 652 (657)
.++.+++.+...+|.. ..|++.+++..+-+.-...+...++.+-.++|..++++| +.|...+|+-+.
T Consensus 19 ~vl~v~s~lf~~lg~~------~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~ 86 (198)
T PF08161_consen 19 EVLNVLSALFEKLGER------SSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLD 86 (198)
T ss_pred HHHHHHHHHHHHHhhh------ccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCcc
Confidence 4788999999999998 889999999999888888788899999999999999999 688888887665
No 282
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=81.09 E-value=33 Score=29.10 Aligned_cols=76 Identities=14% Similarity=0.083 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc--chHHHHHHHHHHHHHH
Q 006201 408 NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--VPNVAEKACGALYFLA 485 (657)
Q Consensus 408 ~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~~l~ 485 (657)
...+..+.+.+ +++++.+...|+.++..+.+.++... ...-.-..+++.+.+.+.+ ++.|+.++...+..-.
T Consensus 40 k~a~ral~krl-~~~n~~vql~AL~LLe~~vkNCG~~f-----h~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 40 KYAMRALKKRL-LSKNPNVQLYALLLLESCVKNCGTHF-----HDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHCCHHH-----HHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 45678888999 99999999999999999999875211 1111124445555555543 6889999999888888
Q ss_pred hhcc
Q 006201 486 QGFE 489 (657)
Q Consensus 486 ~~~~ 489 (657)
..+.
T Consensus 114 ~~f~ 117 (142)
T cd03569 114 LAFR 117 (142)
T ss_pred HHhC
Confidence 7764
No 283
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=80.89 E-value=9.7 Score=35.03 Aligned_cols=89 Identities=16% Similarity=0.183 Sum_probs=55.9
Q ss_pred CcchHhhhH-HHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhc
Q 006201 341 GAWNIAMAG-GTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALM 419 (657)
Q Consensus 341 ~~~~~r~~a-~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~ 419 (657)
+.|.+.... ..+++.+.... +.+.+.+...+.|++.-.|.+++.++...... ...+.++..+...+
T Consensus 98 ~~W~~~D~~~~~~~~~~~~~~-----~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~-------~~~~~~l~~~~~~~- 164 (213)
T PF08713_consen 98 DNWATCDSLCSKLLGPLLKKH-----PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK-------EDFDELLEIIEALL- 164 (213)
T ss_dssp CCHHHHHHHTHHHHHHHHHHH-----GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG-------CHHHHHHHHHHHCT-
T ss_pred CcchhhhHHHHHHHHHHHHhh-----HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHc-
Confidence 457655443 44455543322 67778888888888744444444433222221 34566667776777
Q ss_pred CCCcHHHHHHHHHHHHHHHhhhc
Q 006201 420 QDPNNHVKDTTAWTLGRMFEFLH 442 (657)
Q Consensus 420 ~d~~~~vr~~a~~~l~~l~~~~~ 442 (657)
.|++..||.+..|+|..++...+
T Consensus 165 ~d~~~~vq~ai~w~L~~~~~~~~ 187 (213)
T PF08713_consen 165 KDEEYYVQKAIGWALREIGKKDP 187 (213)
T ss_dssp TGS-HHHHHHHHHHHHHHCTT-H
T ss_pred CCchHHHHHHHHHHHHHHHHhCH
Confidence 99999999999999998888754
No 284
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=80.69 E-value=34 Score=28.91 Aligned_cols=99 Identities=14% Similarity=0.213 Sum_probs=63.1
Q ss_pred hhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcc
Q 006201 375 NITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQG 454 (657)
Q Consensus 375 ~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 454 (657)
.+.++||..-.. +...+..- +.. -...+..+.+.+ +++++.|...|+.++..+.+.++.. ++..
T Consensus 13 ~l~~~dw~~ile----icD~In~~-~~~----~k~a~rai~krl-~~~n~~v~l~AL~LLe~~vkNCG~~------fh~e 76 (139)
T cd03567 13 SNREEDWEAIQA----FCEQINKE-PEG----PQLAVRLLAHKI-QSPQEKEALQALTVLEACMKNCGER------FHSE 76 (139)
T ss_pred cCCCCCHHHHHH----HHHHHHcC-Ccc----HHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHcCHH------HHHH
Confidence 445677865333 33333221 111 244567888899 9999999999999999999988631 1111
Q ss_pred c-HHHHHHHHHHHcc-------cchHHHHHHHHHHHHHHhhcc
Q 006201 455 N-CQQIISVLLQSMK-------DVPNVAEKACGALYFLAQGFE 489 (657)
Q Consensus 455 ~-~~~il~~l~~~l~-------d~~~v~~~a~~al~~l~~~~~ 489 (657)
. -..+++.+++.+. .++.|+......+..-.+.+.
T Consensus 77 vas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 77 VGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 1 1344455555553 147899998888887777653
No 285
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=80.66 E-value=5.6 Score=31.48 Aligned_cols=63 Identities=16% Similarity=0.268 Sum_probs=52.6
Q ss_pred CCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHHH
Q 006201 495 SSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDE-TAPMVMQLVPLIMMELHQT 560 (657)
Q Consensus 495 ~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~ 560 (657)
++.+.||++.++..+...+..-. .++|.-++..|..+++.+|+. +..+...+++.++..+...
T Consensus 2 ~~~l~p~~~~l~~~i~sAMTHi~---~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 2 PELLSPFFPLLMLYISSAMTHIS---PDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred hHHHHhHHHHHHHHHHHHHHhCC---HHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 45678999999999998888765 689999999999999999987 6677888888887776654
No 286
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=80.55 E-value=2.8 Score=26.75 Aligned_cols=41 Identities=24% Similarity=0.392 Sum_probs=28.0
Q ss_pred HHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHH
Q 006201 154 TLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRAL 200 (657)
Q Consensus 154 ~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l 200 (657)
+++.+++.- |..+.. ..+...+...+. |+++.||.+|++.+
T Consensus 2 ~l~~iv~~d-p~ll~~---~~v~~~i~~rl~--D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKD-PTLLDS---SDVQSAIIRRLS--DSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcC-ccccch---HHHHHHHHHHhc--CCChHHHHHHHHHC
Confidence 455555544 555522 356677778888 89999999998753
No 287
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=80.45 E-value=67 Score=35.50 Aligned_cols=154 Identities=12% Similarity=0.141 Sum_probs=100.5
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-cccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhh
Q 006201 3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQN-LPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (657)
Q Consensus 3 ~~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~-~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (657)
..|.+++..+.|+|..+...+...+.+....+ .+.++..|+.-..+.+ ... .+-++. . ++..
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~t~-s~~---~~~il~-~-~~~P----------- 66 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLSTN-SQR---ALEILV-G-VQEP----------- 66 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhhcC-cHH---HHHHHH-h-cCCc-----------
Confidence 45788999999999999999999998776652 2456666766655422 222 222222 2 1110
Q ss_pred cccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC---CCCchHHHHHHHhhc-CCChhHHHHHHHHHHH
Q 006201 82 WLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH---KQWPELIGALLSNIH-QLPPHTKQATLETLGY 157 (657)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~---~~~~~l~~~l~~~l~-~~~~~~~~~~l~~l~~ 157 (657)
.-..+...|=..+.. +.-|..+...|+.+++...+. -.-..|++.|+.++. +.+..+...|+.+|..
T Consensus 67 -------~~K~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~Lim 137 (668)
T PF04388_consen 67 -------HDKHLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIM 137 (668)
T ss_pred -------cHHHHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 001122333334443 367888888889988876321 012578888888876 4567788899999999
Q ss_pred HhhhccccccchhhHhHHHHHHHhccC
Q 006201 158 ICEEVSSDAVEQDHVNKILTAVVQGMN 184 (657)
Q Consensus 158 i~~~~~~~~l~~~~~~~l~~~l~~~l~ 184 (657)
++..+ |..+ .+++..++..+...+.
T Consensus 138 lLP~i-p~~l-~~~L~~Lf~If~Rl~~ 162 (668)
T PF04388_consen 138 LLPHI-PSSL-GPHLPDLFNIFGRLLS 162 (668)
T ss_pred Hhccc-cchh-hHHHHHHHHHHHHHHH
Confidence 98888 6666 6788888887766654
No 288
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=79.60 E-value=36 Score=37.51 Aligned_cols=95 Identities=11% Similarity=0.081 Sum_probs=67.8
Q ss_pred CCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhc
Q 006201 128 QWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFA 207 (657)
Q Consensus 128 ~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~ 207 (657)
.-..++..|...+.. +..|..++..|+.++..- |..+-.-.-..+++.++.+|.. |.+..+-..|+.+|..++..+
T Consensus 67 ~~K~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~q-p~~l~~i~~t~Lf~~LLk~L~~-D~~~~~~~~al~~LimlLP~i 142 (668)
T PF04388_consen 67 HDKHLFDKLNDYFVK--PSYRLQALTLLGHFVRSQ-PPWLYKILQTPLFKSLLKCLQF-DTSITVVSSALLVLIMLLPHI 142 (668)
T ss_pred cHHHHHHHHHHHHcC--chhHHHHHHHHHHHHhcC-CchHHHHhcChhHHHHHHHHhh-cccHHHHHHHHHHHHHHhccc
Confidence 446888888888875 467889999999999876 4433112224678888888876 888999999999999998877
Q ss_pred hhhcCChhhHHHHHHHHHhhc
Q 006201 208 QANFSNDMERDYIMRVVCEAT 228 (657)
Q Consensus 208 ~~~~~~~~~~~~il~~l~~~~ 228 (657)
+.... .+...++.++.+++
T Consensus 143 p~~l~--~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 143 PSSLG--PHLPDLFNIFGRLL 161 (668)
T ss_pred cchhh--HHHHHHHHHHHHHH
Confidence 65432 12345666665544
No 289
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=79.07 E-value=96 Score=33.22 Aligned_cols=55 Identities=18% Similarity=0.288 Sum_probs=46.2
Q ss_pred HhhhHHHHHHHHHhhc-C----CCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCC
Q 006201 345 IAMAGGTCLGLVARTV-G----DDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPS 399 (657)
Q Consensus 345 ~r~~a~~~L~~l~~~~-~----~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~ 399 (657)
++-+..+.|+++++.+ + +...|.+.......+.+.+|-.++-|+.+++.++++++
T Consensus 496 ~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T~ 555 (559)
T PF14868_consen 496 VKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERTS 555 (559)
T ss_pred chHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccCC
Confidence 7778889999988865 2 34677777788888999999999999999999999875
No 290
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=78.87 E-value=1.6e+02 Score=35.78 Aligned_cols=116 Identities=16% Similarity=0.223 Sum_probs=78.0
Q ss_pred chHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHH
Q 006201 403 LVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGAL 481 (657)
Q Consensus 403 ~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al 481 (657)
+..|++.++...-..+ ..+++.|+..+...+..+...+. .-+-+.|+..|+..+.+ +..-...|...|
T Consensus 429 L~~~f~siL~la~~Ll-~S~e~~v~~FG~~~Y~~lF~~fd----------s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL 497 (1426)
T PF14631_consen 429 LKDYFPSILSLAQSLL-RSKEPSVREFGSHLYKYLFKEFD----------SYCQQEVVGALVTHIGSGNSQEVDAALDVL 497 (1426)
T ss_dssp HTTSHHHHHHHHHHHH-TSSSHHHHHHHHHHHHHHHHSS-----------HHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHhhcc----------chhHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3456677777777788 89999999999888877777652 22347788888888764 433335777888
Q ss_pred HHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcc
Q 006201 482 YFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCST 539 (657)
Q Consensus 482 ~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~ 539 (657)
..++... +..+.|| ..++..++..+.+-+ ...+| .++..+..++-..+
T Consensus 498 ~~L~~~~------~~~l~~f-a~~l~giLD~l~~Ls--~~qiR-~lf~il~~La~~~~ 545 (1426)
T PF14631_consen 498 CELAEKN------PSELQPF-ATFLKGILDYLDNLS--LQQIR-KLFDILCTLAFSDS 545 (1426)
T ss_dssp HHHHHH-------HHHHHHT-HHHHHGGGGGGGG----HHHHH-HHHHHHHHHHHHHS
T ss_pred HHHHhcc------HHHHHHH-HHHHHHHHHHHhcCC--HHHHH-HHHHHHHHHhcCCc
Confidence 8777642 3445566 345566667776654 46777 58898888886654
No 291
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=78.49 E-value=40 Score=28.48 Aligned_cols=74 Identities=15% Similarity=0.087 Sum_probs=53.2
Q ss_pred chHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHH--HHHHHHHHHHhcC------CCcHHHHHHHHHHHHHHH
Q 006201 367 LVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV--NIALNFMLTALMQ------DPNNHVKDTTAWTLGRMF 438 (657)
Q Consensus 367 ~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~--~~i~~~l~~~l~~------d~~~~vr~~a~~~l~~l~ 438 (657)
..+..|...+++++.++..-|+..|.++++.|+ ..+...+ ...+..+++.+ . ..++.||..++.++...+
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG-~~fh~evas~~Fl~el~kl~-~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCG-ERFHSEVGKFRFLNELIKLV-SPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC-HHHHHHHHhHHHHHHHHHHh-ccccCCCCCCHHHHHHHHHHHHHHH
Confidence 344556677788888888889999999999985 3332221 23444555555 3 367999999999999999
Q ss_pred hhhc
Q 006201 439 EFLH 442 (657)
Q Consensus 439 ~~~~ 442 (657)
..++
T Consensus 116 ~~f~ 119 (139)
T cd03567 116 LELP 119 (139)
T ss_pred HHhc
Confidence 9885
No 292
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=78.44 E-value=40 Score=28.51 Aligned_cols=81 Identities=16% Similarity=0.190 Sum_probs=58.3
Q ss_pred cccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchh--HHHHHHHHHHhhccccchhhh--HHHHH
Q 006201 453 QGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPF--FQEIVQALLTVTHREDAGESR--LRTAA 527 (657)
Q Consensus 453 ~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~--~~~i~~~L~~~l~~~~~~~~~--~~~~~ 527 (657)
...-..++..|-+.|.. ++.++..|...+..++.++++ .+... -..++..|.+++..... ... ++..+
T Consensus 37 ~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~------~f~~ev~~~~fl~~l~~l~~~~~~-~~~~~Vk~k~ 109 (140)
T PF00790_consen 37 PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGP------RFHREVASKEFLDELVKLIKSKKT-DPETPVKEKI 109 (140)
T ss_dssp TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHH------HHHHHHTSHHHHHHHHHHHHHTTT-HHHSHHHHHH
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHhHHHHHHHHHHHHccCCC-CchhHHHHHH
Confidence 34557788888888885 799999999999999999864 12111 12466777776665443 222 88889
Q ss_pred HHHHHHHHHhccc
Q 006201 528 YETLNEVVRCSTD 540 (657)
Q Consensus 528 ~~al~~l~~~~~~ 540 (657)
++.+.......+.
T Consensus 110 l~ll~~W~~~f~~ 122 (140)
T PF00790_consen 110 LELLQEWAEAFKS 122 (140)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHCC
Confidence 9999998888854
No 293
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=78.34 E-value=34 Score=28.63 Aligned_cols=80 Identities=13% Similarity=0.145 Sum_probs=58.0
Q ss_pred ccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCc-hh-HHHHHHHHHHhhccccchhhhHHHHHHHH
Q 006201 454 GNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLT-PF-FQEIVQALLTVTHREDAGESRLRTAAYET 530 (657)
Q Consensus 454 ~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~-~~-~~~i~~~L~~~l~~~~~~~~~~~~~~~~a 530 (657)
..-...+..|.+.|.. ++.++..|...+..++.+++. .+. .+ -..++..|.+++..... ...++..++..
T Consensus 33 ~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~------~f~~ev~s~~fl~~L~~l~~~~~~-~~~Vk~kil~l 105 (133)
T smart00288 33 DGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGS------KFHLEVASKEFLNELVKLIKPKYP-LPLVKKRILEL 105 (133)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH------HHHHHHHhHHHHHHHHHHHcCCCC-cHHHHHHHHHH
Confidence 3446777888888885 799999999999999999864 121 11 24567777777766543 23388888888
Q ss_pred HHHHHHhccc
Q 006201 531 LNEVVRCSTD 540 (657)
Q Consensus 531 l~~l~~~~~~ 540 (657)
+.......+.
T Consensus 106 i~~W~~~f~~ 115 (133)
T smart00288 106 IQEWADAFKN 115 (133)
T ss_pred HHHHHHHHcC
Confidence 8888887764
No 294
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=78.28 E-value=19 Score=30.98 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhh
Q 006201 522 RLRTAAYETLNEVVRCSTD-ETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKY 600 (657)
Q Consensus 522 ~~~~~~~~al~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 600 (657)
.+-..+.+++-.++-.+.+ .|.|.+.+++.=-...+.+. .+.... .-+......+..++..+++-
T Consensus 36 ~vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~-----~~~~~~----~R~itfy~l~~~l~e~LKsl----- 101 (153)
T PF08146_consen 36 EVESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKS-----DSSGSR----ARLITFYRLLNALAEKLKSL----- 101 (153)
T ss_pred HHHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcc-----cCcCch----hHHHHHHHHHHHHHHHHHHH-----
Confidence 3445778888888888876 47887775544221111110 001111 11224567888888888877
Q ss_pred HhhHHHHHHHHHHHHHHccc
Q 006201 601 VFMQYADQMMGLFLRVFAIR 620 (657)
Q Consensus 601 ~~~~~~~~i~~~l~~~l~~~ 620 (657)
|.||...+++.+...|...
T Consensus 102 -f~~Y~~~ll~~~~~~L~~~ 120 (153)
T PF08146_consen 102 -FTPYFSYLLDNAVDLLKQF 120 (153)
T ss_pred -HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999774
No 295
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=77.78 E-value=15 Score=28.00 Aligned_cols=65 Identities=9% Similarity=0.124 Sum_probs=49.1
Q ss_pred HHHHHHHhcCC-CChHHHHHHHHHHHHHHhhhcC--CCCCchHHHHHHHhhcCCChhHHHHHHHHHHH
Q 006201 93 IKSFILKTLSS-PAHDARSTASQVVAKVAGIELP--HKQWPELIGALLSNIHQLPPHTKQATLETLGY 157 (657)
Q Consensus 93 i~~~ll~~l~~-~~~~vr~~aa~~l~~i~~~~~~--~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~ 157 (657)
+...+...+.+ .+..+|...-.|+..+...... ...|+.++..+.....+++..+...|..++..
T Consensus 18 fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 18 FLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 33445555444 4679999999999988875432 25899999999999998888888888887754
No 296
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.13 E-value=50 Score=39.09 Aligned_cols=150 Identities=11% Similarity=0.088 Sum_probs=96.3
Q ss_pred ccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 006201 36 PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQV 115 (657)
Q Consensus 36 ~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~ 115 (657)
+.++..+... ...+..-++|..+..+++..+..+ .|. ..+..+..|+..+...+.+..-.+|..|+.+
T Consensus 1525 ~e~l~~l~~~-~~~~~tw~vr~avl~fl~~~vy~n----------~Fv-~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~ 1592 (1710)
T KOG1851|consen 1525 PEFLRDLKML-TADSSTWRVRSAVLKFLQTVVYSN----------IFV-SQELRRDDIRKLLESLLNDDQIEVREEAAKC 1592 (1710)
T ss_pred HHHHHHHHHH-hcccchHHHHHHHHHHHHHHHHHH----------hhc-ccchhHHHHHHHHHHHHcchHHHHHHHHHHH
Confidence 5666666553 333557788888888888866532 232 4677888999999999999988899999999
Q ss_pred HHHHHhhhcCCCCCchHHHHHHHhhcC--CChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHH
Q 006201 116 VAKVAGIELPHKQWPELIGALLSNIHQ--LPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVR 193 (657)
Q Consensus 116 l~~i~~~~~~~~~~~~l~~~l~~~l~~--~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr 193 (657)
++.+...-+- ..-+.-........++ .+.....+|...|+.++-.+ |..+ ...+...+..+....+ .+..++
T Consensus 1593 Lsgl~~~s~~-~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~Vlaf-Py~v-P~wip~~L~~Ls~fa~---e~~~i~ 1666 (1710)
T KOG1851|consen 1593 LSGLLQGSKF-QFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAF-PYVV-PLWIPKPLMNLSSFAR---ESAAIK 1666 (1710)
T ss_pred HHHHHhcccc-ccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhc-cccc-hhhhHHHHHHHHhhcC---CchHHH
Confidence 9999886533 1222222222333322 34566788999999998887 5555 3333333333333333 335677
Q ss_pred HHHHHHHHHH
Q 006201 194 LAATRALYNA 203 (657)
Q Consensus 194 ~~al~~l~~~ 203 (657)
.++-+++..+
T Consensus 1667 ~tvkktvseF 1676 (1710)
T KOG1851|consen 1667 QTVKKTVSEF 1676 (1710)
T ss_pred HHHHHHHHHH
Confidence 7777777664
No 297
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=77.07 E-value=26 Score=29.33 Aligned_cols=79 Identities=10% Similarity=0.068 Sum_probs=56.1
Q ss_pred CchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchh-hHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhc
Q 006201 129 WPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQD-HVNKILTAVVQGMNASESNNDVRLAATRALYNALGFA 207 (657)
Q Consensus 129 ~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~-~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~ 207 (657)
-.+.+..|...+.++++.+...|+.+|..++..+ +..+... ....++..+...+......+.|+..++..+..+...+
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNc-g~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNC-GSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-CHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 3567778888888999999999999999999998 4433122 2244556666666642334459999999999987654
Q ss_pred h
Q 006201 208 Q 208 (657)
Q Consensus 208 ~ 208 (657)
.
T Consensus 114 ~ 114 (133)
T smart00288 114 K 114 (133)
T ss_pred c
Confidence 3
No 298
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=76.91 E-value=19 Score=29.17 Aligned_cols=75 Identities=11% Similarity=-0.036 Sum_probs=50.2
Q ss_pred CchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHH--HHHHHHH-----HhcCCCcHHHHHHHHHHHH
Q 006201 363 DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNI--ALNFMLT-----ALMQDPNNHVKDTTAWTLG 435 (657)
Q Consensus 363 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~--i~~~l~~-----~l~~d~~~~vr~~a~~~l~ 435 (657)
.....++..|...+.+.+|++..-|+..|-.++..|+ ..+...+.. .+..+++ ....+.+..||..+..++.
T Consensus 33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g-~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~ 111 (115)
T cd00197 33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCG-ERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQ 111 (115)
T ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcc-HHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHH
Confidence 3456677788888889999999999999999999885 333332211 1122222 1113567899999988876
Q ss_pred HHH
Q 006201 436 RMF 438 (657)
Q Consensus 436 ~l~ 438 (657)
..+
T Consensus 112 ~w~ 114 (115)
T cd00197 112 LWA 114 (115)
T ss_pred HHh
Confidence 543
No 299
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=76.61 E-value=86 Score=31.36 Aligned_cols=156 Identities=15% Similarity=0.085 Sum_probs=80.3
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHh----hhcCCCCCchHHHHHHHhh----cCCChhHH----HHHHHHHHHH
Q 006201 91 AQIKSFILKTLSSPAHDARSTASQVVAKVAG----IELPHKQWPELIGALLSNI----HQLPPHTK----QATLETLGYI 158 (657)
Q Consensus 91 ~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~----~~~~~~~~~~l~~~l~~~l----~~~~~~~~----~~~l~~l~~i 158 (657)
..+.+.+.++|.+..+.+|+.-..+++.+.. .... .....++|.+.+.+ +++.+... .++.-++. +
T Consensus 60 ~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~ 137 (339)
T PF12074_consen 60 KKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSL-KFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-L 137 (339)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHH-HHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-h
Confidence 3445566679999888899999999998886 2111 23345556665555 44432211 22222222 1
Q ss_pred hhhccccccch-----------hhHh-HHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHh
Q 006201 159 CEEVSSDAVEQ-----------DHVN-KILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCE 226 (657)
Q Consensus 159 ~~~~~~~~l~~-----------~~~~-~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~ 226 (657)
.. ...+.+.. +.-. -+-+.+.+.+. +.+-....++++..+..........+. ...+-+.++.
T Consensus 138 ~~-~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~----~~~d~~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~ 211 (339)
T PF12074_consen 138 SS-WKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLA----SEEDLCWLLRALEALLSDHPSELSSDK-SSAWAQAFIY 211 (339)
T ss_pred cc-ccchhhhhhhhhhhhhccCCCcchhcCHHHHhccC----CHhHHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHH
Confidence 00 00010100 0000 01122333322 233344455555555444332222211 2445666666
Q ss_pred hccCC--cHHHHHHHHHHHHHHHHHHHHhh
Q 006201 227 ATLSP--EVKIRQAAFECLVAISSTYYEKL 254 (657)
Q Consensus 227 ~~~~~--~~~~~~~~~~~l~~l~~~~~~~~ 254 (657)
.+... .+++|..+++.+.++....+..+
T Consensus 212 ll~s~~~~~~vR~~A~~~l~~l~~~~~~~l 241 (339)
T PF12074_consen 212 LLCSSNVSWKVRRAALSALKKLYASNPELL 241 (339)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHhChHHH
Confidence 55555 89999999999999988887653
No 300
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=76.59 E-value=29 Score=31.35 Aligned_cols=65 Identities=18% Similarity=0.272 Sum_probs=46.4
Q ss_pred HHHHhhhcCcc-hhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhc
Q 006201 370 PFVEENITKQE-WRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLH 442 (657)
Q Consensus 370 ~~l~~~l~~~~-~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~ 442 (657)
+.+.....+++ |..|.+....+..+.. ..+...++..+...+ .|++..||.+..|+|..++...+
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-------~~~~~~~l~~~~~~~-~d~~~~Vqkav~w~L~~~~~~~~ 173 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-------ETDFDLLLEIIERLL-HDEEYFVQKAVGWALREYGKKDP 173 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-------cccHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHhhCH
Confidence 66677777776 6666655555554544 123466667777777 88999999999999999988754
No 301
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=76.43 E-value=1.5e+02 Score=34.10 Aligned_cols=73 Identities=15% Similarity=0.203 Sum_probs=57.9
Q ss_pred hHhHHHHHH-HhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHH
Q 006201 171 HVNKILTAV-VQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISST 249 (657)
Q Consensus 171 ~~~~l~~~l-~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 249 (657)
.+..++..+ ++-.. |..+++|..++.-|+-|+...++.|.. +.++..+.-.+.|.+.+||..+++.|..+.++
T Consensus 283 mi~~if~sVFVHRYR--DV~~~IRaiCiqeLgiWi~~yP~~Fl~----dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 283 MINDIFDSVFVHRYR--DVDPDIRAICIQELGIWIKSYPEIFLS----DSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK 356 (1048)
T ss_pred HHHHHhhheeeeecc--cCchHHHHHHHHHHHHHHHhccHHHhc----chHHHHhcceeecCccHHHHHHHHHHHHHHhc
Confidence 344444432 34455 899999999999999999888887764 45778888888889999999999999999876
No 302
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.86 E-value=1.4e+02 Score=35.80 Aligned_cols=135 Identities=10% Similarity=0.102 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHH-HHHHHHHHHHHHHHHHHhhhcCChhHHHHH-HHHH
Q 006201 501 FFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAP-MVMQLVPLIMMELHQTLEAQKLSSDEREKQ-NEIQ 578 (657)
Q Consensus 501 ~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~-~~~~ 578 (657)
+.-+++-.+-.++... ...+|..+++++-.+....|++|.+ +...+...++-.+...-.....+ .+..| ..-.
T Consensus 1171 ~wfP~l~~ls~i~~~~---~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~--~~~eW~~tT~ 1245 (1514)
T KOG0929|consen 1171 GWFPMLFQLSKIINDY---RLEVRKRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDES--EKDEWLSTTC 1245 (1514)
T ss_pred eeehhHhhhhHHhhcc---HHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHheeecccccCcccchh--hhhHHHHHHH
Confidence 3334444444444433 3678889999999999999988765 44444443333222211000000 11112 1112
Q ss_pred HHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHcccCCcchhhHHHHHHHHHHHhchhhhhc
Q 006201 579 GLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGLCHHRR 646 (657)
Q Consensus 579 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~~~~l~~l~~~~g~~f~~y 646 (657)
..++..+..+....=+. ....++.++..+..+...+++.+-.....|+..++...|..|..+
T Consensus 1246 ~~Al~~~v~lf~~~~~~------l~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fse~ 1307 (1514)
T KOG0929|consen 1246 NHALQALVDLFTQFFKQ------LNNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFSEE 1307 (1514)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccCHh
Confidence 23444444444443333 445677778888888888899999999999999999999888764
No 303
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=75.86 E-value=1.5e+02 Score=33.62 Aligned_cols=90 Identities=10% Similarity=0.155 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc--chHHHHHHHHHHHHHHhhccCCCCCCCCCchh
Q 006201 424 NHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSPLTPF 501 (657)
Q Consensus 424 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~ 501 (657)
+.||..+..++++++-.- ....+..+|.+++.|.- ...+|.+..-+++.+|-.. ...
T Consensus 945 ~~vra~~vvTlakmcLah-----------~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----------Tam 1003 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAH-----------DRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----------TAM 1003 (1529)
T ss_pred hHHHHHHHHHHHHHHhhh-----------hHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----------HHH
Confidence 568888888888888753 45667899999999983 4678888888888888642 234
Q ss_pred HHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHh
Q 006201 502 FQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRC 537 (657)
Q Consensus 502 ~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~ 537 (657)
.+--+|.+-..+.+++ .-+|.+++-.|+.+++.
T Consensus 1004 ~d~YiP~I~~~L~Dp~---~iVRrqt~ilL~rLLq~ 1036 (1529)
T KOG0413|consen 1004 TDRYIPMIAASLCDPS---VIVRRQTIILLARLLQF 1036 (1529)
T ss_pred HHHhhHHHHHHhcCch---HHHHHHHHHHHHHHHhh
Confidence 4555667777787775 67888888888888764
No 304
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=75.28 E-value=28 Score=29.50 Aligned_cols=78 Identities=10% Similarity=0.049 Sum_probs=57.6
Q ss_pred CchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchh-hHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhc
Q 006201 129 WPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQD-HVNKILTAVVQGMNASESNNDVRLAATRALYNALGFA 207 (657)
Q Consensus 129 ~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~-~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~ 207 (657)
-.+.+..|...+.+.++.+...|+.+|..+++.+ +..+... ....++..+...+.. ..++.|+..++..+..+...+
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNC-G~~fh~evas~~fl~~l~~l~~~-~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNC-GTHFHDEVASREFMDELKDLIKT-TKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHC-CHHHHHHHhhHHHHHHHHHHHcc-cCCHHHHHHHHHHHHHHHHHh
Confidence 3577888888888999999999999999999988 4433111 224555556665554 578899999999999987654
Q ss_pred h
Q 006201 208 Q 208 (657)
Q Consensus 208 ~ 208 (657)
.
T Consensus 117 ~ 117 (142)
T cd03569 117 R 117 (142)
T ss_pred C
Confidence 3
No 305
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=74.58 E-value=52 Score=27.83 Aligned_cols=97 Identities=10% Similarity=0.085 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHH--HHHHHHHHHHHHHHhhhcCChhHHHHHHHH
Q 006201 500 PFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVM--QLVPLIMMELHQTLEAQKLSSDEREKQNEI 577 (657)
Q Consensus 500 ~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 577 (657)
......+..|.+-+...+ .+++..++..+..+++.+|..|...+. .++..+.+.+.... ... ...+
T Consensus 38 ~~~kea~~~l~krl~~~~---~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~-------~~~--~~~V 105 (140)
T PF00790_consen 38 DGAKEAARALRKRLKHGN---PNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKK-------TDP--ETPV 105 (140)
T ss_dssp THHHHHHHHHHHHHTTSS---HHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTT-------THH--HSHH
T ss_pred ccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCC-------CCc--hhHH
Confidence 455677888888887753 677778999999999999986655432 34445444444321 111 0127
Q ss_pred HHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHH
Q 006201 578 QGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLF 613 (657)
Q Consensus 578 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l 613 (657)
|..+++.+..-...++... -.+++..++..+
T Consensus 106 k~k~l~ll~~W~~~f~~~~-----~~~~i~~~y~~L 136 (140)
T PF00790_consen 106 KEKILELLQEWAEAFKSDP-----ELSLIQDTYKRL 136 (140)
T ss_dssp HHHHHHHHHHHHHHTTTST-----TGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCC-----CchHHHHHHHHH
Confidence 8889999999999996653 334555555443
No 306
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=74.07 E-value=48 Score=28.86 Aligned_cols=137 Identities=13% Similarity=0.224 Sum_probs=73.8
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcc
Q 006201 410 ALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFE 489 (657)
Q Consensus 410 i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~l~~~~~ 489 (657)
+=|.++.+| + ...++...++.|+++......+. -.....-++.+...++..-...+ .+|...+..+...+.
T Consensus 4 ikplLIsCL-~--~q~~k~s~~KiL~~iVs~Va~~v---~~~~~~~W~eL~d~Ils~~~~e~---~kA~~IF~~L~~~l~ 74 (174)
T PF04510_consen 4 IKPLLISCL-T--MQETKESDFKILRRIVSHVAYEV---FDLQEGGWDELSDCILSLSENEP---VKAFHIFICLPMPLY 74 (174)
T ss_pred hHHHHHHHH-H--hhcccHhHHHHHHHHHHHHHHHH---HhcCCCCchhHHHHHHHhhccch---HHHHHHHHhCCchhh
Confidence 446667777 3 33344555555555555432110 00233445555555554322222 455555555542221
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHH---HHHHHHHhcccc-cHHHHHHHHHHHHHHHHHHHh
Q 006201 490 DAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYE---TLNEVVRCSTDE-TAPMVMQLVPLIMMELHQTLE 562 (657)
Q Consensus 490 ~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~---al~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~ 562 (657)
+..+.|+++.+++.+.+.+..+.. .++..+.+. ++...+...... ...++..+++.+++.+.+.++
T Consensus 75 -----~efl~~~~~~L~~~~~~~L~~p~~--~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~ 144 (174)
T PF04510_consen 75 -----GEFLIPFMENLLPEISKVLLPPEE--VDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVE 144 (174)
T ss_pred -----hhHHHHHHHHHHHHHHHHcCCchh--ccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999987752 333333332 233333333322 346788888888887777664
No 307
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=73.62 E-value=65 Score=30.27 Aligned_cols=130 Identities=15% Similarity=0.160 Sum_probs=74.3
Q ss_pred CCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCc---ccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCC--
Q 006201 420 QDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQ---GNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAIS-- 493 (657)
Q Consensus 420 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~---~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~-- 493 (657)
+|+++.|...+..+.+.+......-... ..... ..+..+=..++..+.+ ++.||..|...+..++-.......
T Consensus 3 ~d~d~~v~K~~I~~~~~iy~~~~~~i~~-~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~ 81 (239)
T PF11935_consen 3 NDEDPAVVKRAIQCSTSIYPLVFRWICV-NPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDS 81 (239)
T ss_dssp T-SSHHHHHHHHHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCC
Confidence 7888888888887777665543210000 00111 1223333445555554 688999999999988855432100
Q ss_pred ---------------CC--C-----CCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHH
Q 006201 494 ---------------PS--S-----PLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVP 551 (657)
Q Consensus 494 ---------------~~--~-----~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~ 551 (657)
++ . .++.-...++..|+..+..... ...+-..++.+|+.+++.-+. |+..+++
T Consensus 82 ~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i-~~~~~~a~insL~~Iak~RP~----~~~~Il~ 156 (239)
T PF11935_consen 82 PPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHI-SSPLLTAIINSLSNIAKQRPQ----FMSRILP 156 (239)
T ss_dssp ---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT---HHHHHHHHHHHHHHHHHSGG----GHHHHHH
T ss_pred ccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHHHHHHhhH----HHHHHHH
Confidence 00 0 1222355778888888877653 245556788899999988873 5666666
Q ss_pred HHHH
Q 006201 552 LIMM 555 (657)
Q Consensus 552 ~l~~ 555 (657)
.+..
T Consensus 157 ~ll~ 160 (239)
T PF11935_consen 157 ALLS 160 (239)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
No 308
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=73.10 E-value=41 Score=33.26 Aligned_cols=104 Identities=18% Similarity=0.165 Sum_probs=63.9
Q ss_pred hhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCc
Q 006201 374 ENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQ 453 (657)
Q Consensus 374 ~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 453 (657)
+..+..+|......|.-++.=.++ -...+..|.+.+ ++.++.|...|+-+++.+...|+.... -.+..
T Consensus 19 e~nT~enW~~IlDvCD~v~~~~~~---------~kd~lk~i~KRl-n~~dphV~L~AlTLlda~~~NCg~~~r--~EVsS 86 (462)
T KOG2199|consen 19 EKNTSENWSLILDVCDKVGSDPDG---------GKDCLKAIMKRL-NHKDPHVVLQALTLLDACVANCGKRFR--LEVSS 86 (462)
T ss_pred cccccccHHHHHHHHHhhcCCCcc---------cHHHHHHHHHHh-cCCCcchHHHHHHHHHHHHHhcchHHH--HHHhh
Confidence 345667898755555444433322 245678889999 999999999999999999988863210 01222
Q ss_pred ccHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhccC
Q 006201 454 GNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFED 490 (657)
Q Consensus 454 ~~~~~il~~l~~~l~d~~~v~~~a~~al~~l~~~~~~ 490 (657)
.-+..-+..|+.. ..+++|+.+....+....+.+..
T Consensus 87 r~F~~el~al~~~-~~h~kV~~k~~~lv~eWsee~K~ 122 (462)
T KOG2199|consen 87 RDFTTELRALIES-KAHPKVCEKMRDLVKEWSEEFKK 122 (462)
T ss_pred hhHHHHHHHHHhh-cccHHHHHHHHHHHHHHHHHhcc
Confidence 2233333333332 22678888777777777776543
No 309
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=72.85 E-value=65 Score=29.88 Aligned_cols=116 Identities=12% Similarity=0.134 Sum_probs=71.0
Q ss_pred HHHHHHHhhcC-CChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHh-----
Q 006201 132 LIGALLSNIHQ-LPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALG----- 205 (657)
Q Consensus 132 l~~~l~~~l~~-~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~----- 205 (657)
+.|++.....+ +.+..|..++.+++.+++.-+.+.+..-...+++|..+..+. ..+..-+..|.-++..++.
T Consensus 125 lYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime--~GSelSKtvA~fIlqKIlldD~GL 202 (293)
T KOG3036|consen 125 LYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIME--SGSELSKTVATFILQKILLDDVGL 202 (293)
T ss_pred hHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHh--cccHHHHHHHHHHHHHHhhccccH
Confidence 34555554433 456789999999999998763333312234678999998888 5677778888888877653
Q ss_pred -hchhhcCChhhHHHHHH-HHHhhccCCcHHHHHHHHHHHHHHHHH
Q 006201 206 -FAQANFSNDMERDYIMR-VVCEATLSPEVKIRQAAFECLVAISST 249 (657)
Q Consensus 206 -~~~~~~~~~~~~~~il~-~l~~~~~~~~~~~~~~~~~~l~~l~~~ 249 (657)
|+-..++.-.....+++ .+..+...+++.+.+.++.|..++..+
T Consensus 203 ~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 203 YYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 11111110001122333 334455667787778888888777653
No 310
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=72.28 E-value=42 Score=28.45 Aligned_cols=96 Identities=9% Similarity=0.041 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHH--HHHHH-HHHHHHHHHhhhcCChhHHHHHHHH
Q 006201 501 FFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVM--QLVPL-IMMELHQTLEAQKLSSDEREKQNEI 577 (657)
Q Consensus 501 ~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~--~l~~~-l~~~l~~~~~~~~~~~~~~~~~~~~ 577 (657)
.....+..|.+-+.... +.++...++..+..+++.+|..|...+. .++.. +.+.+.... . ....+
T Consensus 35 ~~k~a~ralkkRl~~~~--n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~------~----~~~~V 102 (141)
T cd03565 35 GPKDAVRALKKRLNGNK--NHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKN------N----PPTIV 102 (141)
T ss_pred cHHHHHHHHHHHHccCC--CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccC------C----CcHHH
Confidence 34566677777675322 2455557899999999999987665433 34554 444443110 0 11246
Q ss_pred HHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHH
Q 006201 578 QGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLF 613 (657)
Q Consensus 578 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l 613 (657)
+..+++.+..-...++.+. -.+++..+++.+
T Consensus 103 k~kil~li~~W~~~f~~~~-----~l~~i~~~y~~L 133 (141)
T cd03565 103 QEKVLALIQAWADAFRGSP-----DLTGVVEVYEEL 133 (141)
T ss_pred HHHHHHHHHHHHHHhCCCc-----cchHHHHHHHHH
Confidence 7789999999999987662 224444444443
No 311
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=72.08 E-value=4.4 Score=22.83 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHh
Q 006201 426 VKDTTAWTLGRMFE 439 (657)
Q Consensus 426 vr~~a~~~l~~l~~ 439 (657)
||.+|.++||++..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 78999999987766
No 312
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=71.67 E-value=8.7 Score=22.11 Aligned_cols=15 Identities=27% Similarity=0.315 Sum_probs=13.3
Q ss_pred hhhHHHHHHHHHHhh
Q 006201 381 WRQREAATYAFGSIL 395 (657)
Q Consensus 381 ~~~r~aal~~l~~i~ 395 (657)
|.+|+.+..+||.+.
T Consensus 1 ~~vR~~aa~aLg~~~ 15 (30)
T smart00567 1 PLVRHEAAFALGQLG 15 (30)
T ss_pred CHHHHHHHHHHHHcC
Confidence 678999999999884
No 313
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=71.47 E-value=1.7e+02 Score=32.74 Aligned_cols=82 Identities=9% Similarity=0.024 Sum_probs=47.9
Q ss_pred ccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHH
Q 006201 164 SDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECL 243 (657)
Q Consensus 164 ~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l 243 (657)
|..+ ......+......-++. ....-..-|++++..++....+.. ..+...++..+..++.+..++.+..++.++
T Consensus 47 p~KL-~KI~~yL~~R~~kdl~~--~r~~~v~Iamea~~kLL~~C~eq~--n~F~ssfL~mv~~LLes~~~~~~ilg~~sf 121 (819)
T KOG1877|consen 47 PSKL-PKIGTYLEERCYKDLRR--ERFGSVKIAMEAYDKLLQACKEQI--NLFVSSFLRMVQKLLESNNDEMQILGTNSF 121 (819)
T ss_pred hhhh-hHHHHHHHHHHHHHHHh--ccCcchhhHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcCCCceeeehhhHH
Confidence 4444 33334444444444442 222222346666666665554443 233456777777777777888888899999
Q ss_pred HHHHHHH
Q 006201 244 VAISSTY 250 (657)
Q Consensus 244 ~~l~~~~ 250 (657)
.+++...
T Consensus 122 ~~F~~i~ 128 (819)
T KOG1877|consen 122 VKFANIE 128 (819)
T ss_pred HHHHhhc
Confidence 9988543
No 314
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=71.33 E-value=24 Score=28.91 Aligned_cols=76 Identities=20% Similarity=0.289 Sum_probs=50.6
Q ss_pred CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccc---hhhHhHHHHHHHhccC------CCCCCHHHHHHHH
Q 006201 127 KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVE---QDHVNKILTAVVQGMN------ASESNNDVRLAAT 197 (657)
Q Consensus 127 ~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~---~~~~~~l~~~l~~~l~------~~~~~~~vr~~al 197 (657)
....+++..|...+++.++.++.-+|++|..+|..- +..+. +.+.. ++..+.+.-. ..+....||..|-
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G-~~~f~~~~~~~~~-~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~ 111 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKG-NSDFKRELQRNSA-QIRECANYKGPPDPLKGDSLNEKVREEAQ 111 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhC-CHHHHHHHHHhHH-HHHHHHHcCCCCCcccCcchhHHHHHHHH
Confidence 466799999999999999999999999999999987 33331 12222 2222322211 1234667898888
Q ss_pred HHHHHHH
Q 006201 198 RALYNAL 204 (657)
Q Consensus 198 ~~l~~~~ 204 (657)
+++..+.
T Consensus 112 El~~~if 118 (122)
T cd03572 112 ELIKAIF 118 (122)
T ss_pred HHHHHHh
Confidence 8776654
No 315
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.14 E-value=25 Score=33.68 Aligned_cols=67 Identities=21% Similarity=0.102 Sum_probs=44.8
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHcccchHHHHHHHHHHHHHHhh
Q 006201 412 NFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQG 487 (657)
Q Consensus 412 ~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~l~~~ 487 (657)
..++..+ .+++|.||.+|+.-+..++.. + ......+-...++.+.+.+.+.+. ...|+.++.++...
T Consensus 6 ~elv~ll-~~~sP~v~~~AV~~l~~lt~~-~------~~~~~~~~~~~lk~l~qL~~~~~~-~~~a~~alVnlsq~ 72 (353)
T KOG2973|consen 6 VELVELL-HSLSPPVRKAAVEHLLGLTGR-G------LQSLSKYSEALLKDLTQLLKDLDP-AEPAATALVNLSQK 72 (353)
T ss_pred HHHHHHh-ccCChHHHHHHHHHHhhcccc-c------hhhhccchhhhHHHHHHHccCccc-ccHHHHHHHHHHhh
Confidence 4466778 999999999999776666555 2 123445566777778887776322 45566667666654
No 316
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=69.98 E-value=12 Score=32.45 Aligned_cols=129 Identities=13% Similarity=0.143 Sum_probs=67.7
Q ss_pred CChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhch----hhcCChhhHH
Q 006201 143 LPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQ----ANFSNDMERD 218 (657)
Q Consensus 143 ~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~----~~~~~~~~~~ 218 (657)
..+.+|..++.++..+.+.. ++.+ .+.+...+.. .+. +.+.+-...++.++..+.+..+ ..|..+
T Consensus 17 ~~~~~r~~a~v~l~k~l~~~-~~~~-~~~~~~~i~~---~~~--~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~e---- 85 (157)
T PF11701_consen 17 QPEEVRSHALVILSKLLDAA-REEF-KEKISDFIES---LLD--EGEMDSLIIAFSALTALFPGPPDVGSELFLSE---- 85 (157)
T ss_dssp TSCCHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHH---HHC--CHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTT----
T ss_pred CCHhHHHHHHHHHHHHHHHh-HHHH-HHHHHHHHHH---HHc--cccchhHHHHHHHHHHHhCCCHHHHHHHHhhh----
Confidence 35577888888888886444 3322 2222222222 223 2222345557777777655433 223332
Q ss_pred HHHHHHHhhcc--CCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHh-cCChH-HHHHHHHH
Q 006201 219 YIMRVVCEATL--SPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVR-EDEEP-VALQAIEF 283 (657)
Q Consensus 219 ~il~~l~~~~~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~-v~~~a~~~ 283 (657)
.+++.+...+. .++..+...+++++..-+..... -.......++.+....+ +.++. +|..|.-.
T Consensus 86 g~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~-r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~ 153 (157)
T PF11701_consen 86 GFLESLLPLASRKSKDRKVQKAALELLSAACIDKSC-RTFISKNYVSWLKELYKNSKDDSEIRVLAAVG 153 (157)
T ss_dssp THHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHH-HHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHH
T ss_pred hHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHH-HHHHHHHHHHHHHHHHccccchHHHHHHHHHH
Confidence 35666666665 67888888899998876543221 11122344444445554 34444 67766643
No 317
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.88 E-value=2.4e+02 Score=33.50 Aligned_cols=151 Identities=11% Similarity=0.164 Sum_probs=92.2
Q ss_pred CChHHHHHHHHHHHHHHhhhcC--CCCCchHHHHHHHhhcCC---ChhHHHHHHHHHHHHhhhccccccchhhHhHHHHH
Q 006201 104 PAHDARSTASQVVAKVAGIELP--HKQWPELIGALLSNIHQL---PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTA 178 (657)
Q Consensus 104 ~~~~vr~~aa~~l~~i~~~~~~--~~~~~~l~~~l~~~l~~~---~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~ 178 (657)
+-.++|..--.++-.|...... ...|+.+++.|-...... ...+...+..+|..|+.++ -+-+.......++..
T Consensus 854 ~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDf-LqSLp~sci~~lidt 932 (1610)
T KOG1848|consen 854 RGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDF-LQSLPTSCILDLIDT 932 (1610)
T ss_pred ccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcc-hhcCChHHHHHHHHH
Confidence 3345554444555555554322 135999998888665544 3456677888998888776 333434555666666
Q ss_pred HHhccCCCCCCHHHHHHHHHHHHHHHhhchh-hcC------------------------ChhhHHHHHHHHHhhccCCcH
Q 006201 179 VVQGMNASESNNDVRLAATRALYNALGFAQA-NFS------------------------NDMERDYIMRVVCEATLSPEV 233 (657)
Q Consensus 179 l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~-~~~------------------------~~~~~~~il~~l~~~~~~~~~ 233 (657)
+...... ..+.++-..|+..|-.+-.|+.. .+. .+..|-.++..+..+..++.+
T Consensus 933 l~~fs~Q-ktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr~ 1011 (1610)
T KOG1848|consen 933 LLVFSRQ-KTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSRA 1011 (1610)
T ss_pred HHHHHhh-hccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccchH
Confidence 6655443 45556666666555544444322 110 011122345566677788889
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHH
Q 006201 234 KIRQAAFECLVAISSTYYEKLAP 256 (657)
Q Consensus 234 ~~~~~~~~~l~~l~~~~~~~~~~ 256 (657)
+||..+++++-++...++..+.+
T Consensus 1012 eVRngAvqtlfri~~Shg~~l~~ 1034 (1610)
T KOG1848|consen 1012 EVRNGAVQTLFRIFNSHGSKLGT 1034 (1610)
T ss_pred HHhhhHHHHHHHHHhhhcccCCh
Confidence 99999999999999888766654
No 318
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=69.71 E-value=34 Score=31.06 Aligned_cols=81 Identities=12% Similarity=0.141 Sum_probs=53.9
Q ss_pred HHHHHHhhcC-CCchhchHHHHHhhhcCcc-hhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHH
Q 006201 352 CLGLVARTVG-DDIVPLVMPFVEENITKQE-WRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDT 429 (657)
Q Consensus 352 ~L~~l~~~~~-~~~~~~l~~~l~~~l~~~~-~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~ 429 (657)
.++.++..+. -...|.+++.......+.+ |..|-+.+.++.-.-++. +...+++.+-..+ +|.+..||.+
T Consensus 102 vvD~la~~~V~~~~~~~li~~~~a~~~~~~~w~rraaiv~~l~~~k~~~-------~~~~if~i~E~~l-~d~e~fV~KA 173 (222)
T COG4912 102 VVDTLANHFVGIPLWPDLIEEWAADAEEDNRWERRAAIVHQLVYKKKTL-------DLLEIFEIIELLL-GDKEFFVQKA 173 (222)
T ss_pred HHHHHHHHhhccccCHHHHHHHHhccccchHHHHHHHHHHHHHHhcCcc-------chhHHHHHHHHHc-cChHHHHHHH
Confidence 4455555543 3556666666644444443 666666666666555542 1235677777788 9999999999
Q ss_pred HHHHHHHHHhh
Q 006201 430 TAWTLGRMFEF 440 (657)
Q Consensus 430 a~~~l~~l~~~ 440 (657)
.-|+|.+++..
T Consensus 174 igWaLrq~~k~ 184 (222)
T COG4912 174 IGWALRQIGKH 184 (222)
T ss_pred HHHHHHHHHhh
Confidence 99999999994
No 319
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=69.33 E-value=74 Score=27.41 Aligned_cols=111 Identities=20% Similarity=0.220 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHH-HHHHHHHHHHHhcccccHHHHHHHH
Q 006201 472 NVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRT-AAYETLNEVVRCSTDETAPMVMQLV 550 (657)
Q Consensus 472 ~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~-~~~~al~~l~~~~~~~~~~~~~~l~ 550 (657)
.+-..+..++..++-.+. ...+.|.+-.++.--..-+...+......|. ..+..+..+.+..+.-+.||+..++
T Consensus 36 ~vE~~v~~~~~~lV~KLn-----E~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll 110 (153)
T PF08146_consen 36 EVESSVISAFVSLVLKLN-----EATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLL 110 (153)
T ss_pred HHHHHHHHHHHHHHHHcc-----cchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777665 3567888777777766645443221223332 4667788999999988999999999
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHH
Q 006201 551 PLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQ 590 (657)
Q Consensus 551 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 590 (657)
+...+.|+..-... .++......++..++.++.....
T Consensus 111 ~~~~~~L~~~~~~~---~~~~~~~~~L~~~vL~~L~~~F~ 147 (153)
T PF08146_consen 111 DNAVDLLKQFNSSK---TESKSKSWELWRLVLSTLQKCFL 147 (153)
T ss_pred HHHHHHHHHhhhcc---ccchhhHHHHHHHHHHHHHHHHh
Confidence 99988887753211 11100112456667777766554
No 320
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=68.85 E-value=1.3e+02 Score=30.06 Aligned_cols=94 Identities=17% Similarity=0.198 Sum_probs=63.0
Q ss_pred HhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHH---
Q 006201 172 VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISS--- 248 (657)
Q Consensus 172 ~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~--- 248 (657)
...++..+...+.. +.++......+++|...+.++... ..+.+++.+...+++..+.+|+..+.+++....
T Consensus 20 s~~i~~~l~~~~~K-E~nE~aL~~~l~al~~~~~~~~~~-----~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~ 93 (339)
T PF12074_consen 20 SSKIVQGLSPLLSK-ESNEAALSALLSALFKHLFFLSSE-----LPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESP 93 (339)
T ss_pred HHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHhCcC-----CCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhcc
Confidence 34455555555553 677888999999999987765211 125788888888888777899999999999875
Q ss_pred --HHHHhhHHhHHHHHHHHHHHHhc
Q 006201 249 --TYYEKLAPYIQDIFNITAKAVRE 271 (657)
Q Consensus 249 --~~~~~~~~~~~~l~~~~~~~~~~ 271 (657)
....+..++++.++..+-+...+
T Consensus 94 ~~~~~~~~~~~~~~L~~~~~~~~~~ 118 (339)
T PF12074_consen 94 NSDSLKFAEPFLPKLLQSLKEASAN 118 (339)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhC
Confidence 22334445555555555544444
No 321
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=67.92 E-value=84 Score=27.51 Aligned_cols=102 Identities=13% Similarity=0.174 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHHHHhhchhhcCCh--------hhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Q 006201 189 NNDVRLAATRALYNALGFAQANFSND--------MERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQD 260 (657)
Q Consensus 189 ~~~vr~~al~~l~~~~~~~~~~~~~~--------~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 260 (657)
+...|..+++.+..++......+... ..+..+.+.+......+++.+...++..+..+...+...++..+..
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~ 114 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV 114 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888776544333311 1124556666666655668888999999999998887777777777
Q ss_pred HHHHHHH-HHhcCC--hHHHHHHHHHHHHHhHH
Q 006201 261 IFNITAK-AVREDE--EPVALQAIEFWSSVCDE 290 (657)
Q Consensus 261 l~~~~~~-~~~~~~--~~v~~~a~~~~~~l~~~ 290 (657)
++..+.. .+.... ...|..+++++..++..
T Consensus 115 ~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 115 FLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 7776655 444332 35778889988888863
No 322
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=67.67 E-value=1.7e+02 Score=33.75 Aligned_cols=137 Identities=16% Similarity=0.179 Sum_probs=76.9
Q ss_pred cCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHH
Q 006201 141 HQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYI 220 (657)
Q Consensus 141 ~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i 220 (657)
.|-.+.+|--++.-|+..+..+ |+.|-. ...+..+.=.|. |.+.+||..++++|..+...-.....-+.+...+
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~y-P~~Fl~---dsYLKYiGWtLs--Dk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRF 370 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSY-PEIFLS---DSYLKYIGWTLS--DKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRF 370 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhc-cHHHhc---chHHHHhcceee--cCccHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 4557889999999999999988 654411 112233334555 8899999999999999765311000001111222
Q ss_pred HHHHHhhc-cCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 006201 221 MRVVCEAT-LSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVC 288 (657)
Q Consensus 221 l~~l~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~ 288 (657)
-.-+.... .+.+..||...+..+..... +..+. ..=+..+..++-+.++.++..|.+++..-.
T Consensus 371 K~RIVeMadrd~~~~Vrav~L~~~~~~~~--~g~L~---d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~ 434 (1048)
T KOG2011|consen 371 KDRIVEMADRDRNVSVRAVGLVLCLLLSS--SGLLS---DKDILIVYSLIYDSNRRVAVAAGEFLYKKL 434 (1048)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHhc--ccccC---hhHHHHHHHHHhccCcchHHHHHHHHHHHh
Confidence 22222222 44566777665554443321 11111 122334455666778888888888765533
No 323
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=66.62 E-value=1.5e+02 Score=30.06 Aligned_cols=314 Identities=13% Similarity=0.151 Sum_probs=139.9
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhhhcC-------CCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhc-ccc
Q 006201 94 KSFILKTLSSPAHDARSTASQVVAKVAGIELP-------HKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEV-SSD 165 (657)
Q Consensus 94 ~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~-------~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~-~~~ 165 (657)
.+.|.+...+++..+-.+.+.++|.++...-. .+.-.-++..+...+.-.++..-+..-..++.+..+. +.+
T Consensus 89 le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~ 168 (604)
T KOG4500|consen 89 LELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSR 168 (604)
T ss_pred HHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcH
Confidence 34455566677789999999999999864211 0112233444444443334433232222333333322 111
Q ss_pred ccchhhH--hHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcC----ChhhHHHHHHHHHhhccCCcHHHHHHH
Q 006201 166 AVEQDHV--NKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFS----NDMERDYIMRVVCEATLSPEVKIRQAA 239 (657)
Q Consensus 166 ~l~~~~~--~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~----~~~~~~~il~~l~~~~~~~~~~~~~~~ 239 (657)
.+ +..+ -.+++.+...+--.-++.+.....+-.+.++.++..+... +....-..++.+... -.++++..+
T Consensus 169 ~l-~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~---v~~d~~eM~ 244 (604)
T KOG4500|consen 169 EL-RAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSM---VREDIDEMI 244 (604)
T ss_pred HH-HHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHh---hccchhhHH
Confidence 12 1111 2234433332221123444444444555555554433211 111001122222222 345667778
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhh
Q 006201 240 FECLVAISSTYYEKLAPYIQDIFNITAKAVRE-DEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHAL 318 (657)
Q Consensus 240 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 318 (657)
++.+...++...-.+.-.-..+++..+..+++ .+..-+...+..+.+.++...-+. .|+. ++++.-. -
T Consensus 245 feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vlll-------tGDe---SMq~L~~-~ 313 (604)
T KOG4500|consen 245 FEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLL-------TGDE---SMQKLHA-D 313 (604)
T ss_pred HHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhh-------cCch---HHHHHhc-C
Confidence 88887777654321110001233333333322 111111122222333333211000 0110 1111110 1
Q ss_pred hhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhc-------CCCchhchHHHHHh-hhcCcchhhHHHHHHH
Q 006201 319 PVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV-------GDDIVPLVMPFVEE-NITKQEWRQREAATYA 390 (657)
Q Consensus 319 ~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~-------~~~~~~~l~~~l~~-~l~~~~~~~r~aal~~ 390 (657)
++++..+..|+...+ .+.-..+.-+++.+++.- ...++..++..+.+ .-.+.+.+..+|++.+
T Consensus 314 p~~l~~~~sw~~S~d---------~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsA 384 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDD---------SNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSA 384 (604)
T ss_pred cHHHHHHHHHhcCCc---------hhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHH
Confidence 235556666665311 233445666777776532 24556666666654 4456678999999999
Q ss_pred HHHhhcCC-CCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 006201 391 FGSILEGP-SPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTL 434 (657)
Q Consensus 391 l~~i~~~~-~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l 434 (657)
|..+.-.. +...+.+ ..+...++..+ +-..|+|..--+-++
T Consensus 385 LRnl~IPv~nka~~~~--aGvteaIL~~l-k~~~ppv~fkllgTl 426 (604)
T KOG4500|consen 385 LRNLMIPVSNKAHFAP--AGVTEAILLQL-KLASPPVTFKLLGTL 426 (604)
T ss_pred HHhccccCCchhhccc--cchHHHHHHHH-HhcCCcchHHHHHHH
Confidence 99876422 1111111 23455667777 767777765444443
No 324
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=66.01 E-value=2e+02 Score=31.05 Aligned_cols=76 Identities=18% Similarity=0.199 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchh
Q 006201 423 NNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPF 501 (657)
Q Consensus 423 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~ 501 (657)
+..+-...+..+.+++.++. ..+..+..++..++..... ...+|..|.-++..+|.... ...+.+.
T Consensus 255 ~te~~~~~L~~l~~l~~~~~--------~f~k~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~-----~~~l~~v 321 (661)
T KOG2256|consen 255 DTEVLAFTLRHLTVLVPFLA--------TFPKLLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFK-----STCLDPV 321 (661)
T ss_pred hHHHHHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHheeeccCCcchhhHHHHHHHHHHHHhh-----hHHHHHH
Confidence 34455555556666666553 2345556666666665554 57788899999998887643 3445555
Q ss_pred HHHHHHHHHH
Q 006201 502 FQEIVQALLT 511 (657)
Q Consensus 502 ~~~i~~~L~~ 511 (657)
+.+.+-..+.
T Consensus 322 lk~mY~afv~ 331 (661)
T KOG2256|consen 322 LKTMYLAFVR 331 (661)
T ss_pred HHHHHHHHHH
Confidence 5554444433
No 325
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=65.84 E-value=1.7e+02 Score=30.37 Aligned_cols=133 Identities=10% Similarity=0.178 Sum_probs=72.5
Q ss_pred CCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHH
Q 006201 142 QLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIM 221 (657)
Q Consensus 142 ~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il 221 (657)
.-++..|+..+.||.-+-.. ..+ ....+++.|+..+. ..+...|..+..-+...+..+...-.++. .+.-+
T Consensus 31 ~lp~~Lr~~i~~~LiLLrNk---~~i---~~~~LL~lff~l~~--~~dk~lRkllythiv~~Ikn~n~~~kn~k-lnksl 101 (616)
T KOG2229|consen 31 VLPPELREKIVKALILLRNK---NLI---VAEDLLELFFPLLR--CGDKNLRKLLYTHIVTTIKNINKKHKNDK-LNKSL 101 (616)
T ss_pred cCCHHHHHHHHHHHHHHhcc---CcC---CHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHHHhhcccch-HHHHH
Confidence 34678888888888665332 222 23567777787777 56667787665554444433222222211 13333
Q ss_pred H-HHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 006201 222 R-VVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSV 287 (657)
Q Consensus 222 ~-~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l 287 (657)
+ +++..+.++++.-...++..++.+= ...+.. =..-+.++....-+..+.|...++.|+...
T Consensus 102 q~~~fsml~~~d~~~ak~a~~~~~eL~---kr~iW~-d~~tV~i~~~acf~~~~ki~vs~l~FfL~~ 164 (616)
T KOG2229|consen 102 QAFMFSMLDQSDSTAAKMALDTMIELY---KRNIWN-DSKTVNIITTACFSKVPKILVSGLRFFLGA 164 (616)
T ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHH---Hhcccc-cchhHHHHHHHHhccCcHHHHhhhHHhccC
Confidence 3 4566677677665555666666543 332322 112333333334456778888888886543
No 326
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=65.47 E-value=2e+02 Score=30.99 Aligned_cols=298 Identities=9% Similarity=0.060 Sum_probs=148.3
Q ss_pred HHHHhcCCC--ChHHHHHHHHHHHHHHhh-------hcCCCCCchHHHHHHHhhcC--CChhHHHHHHHHHHHHhhhccc
Q 006201 96 FILKTLSSP--AHDARSTASQVVAKVAGI-------ELPHKQWPELIGALLSNIHQ--LPPHTKQATLETLGYICEEVSS 164 (657)
Q Consensus 96 ~ll~~l~~~--~~~vr~~aa~~l~~i~~~-------~~~~~~~~~l~~~l~~~l~~--~~~~~~~~~l~~l~~i~~~~~~ 164 (657)
.+-+.+... +..++.+.|+++..|..- +..+..|.+.+..|...+.. ..+.....++.....++.-.++
T Consensus 133 ~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K~khw~~afPL~t~lLCvS~~ 212 (552)
T PF14222_consen 133 SLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSKPKHWNVAFPLVTTLLCVSPK 212 (552)
T ss_pred HHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHhcCcH
Confidence 334444433 567999999988876542 12224788877777655432 1245555666666666555545
Q ss_pred cccchhhHh-HHHHHHHhccCCCCCCHHHHHHHHHHHHHHHh-hc-hhhcCCh--h--hHHHHHHHHHhhcc----CCcH
Q 006201 165 DAVEQDHVN-KILTAVVQGMNASESNNDVRLAATRALYNALG-FA-QANFSND--M--ERDYIMRVVCEATL----SPEV 233 (657)
Q Consensus 165 ~~l~~~~~~-~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~-~~-~~~~~~~--~--~~~~il~~l~~~~~----~~~~ 233 (657)
+.| ..+.. .++..+...++ |. ..|..++.|+..++= |+ -...+.. . ..+.++..++..-+ ..|.
T Consensus 213 e~F-~~~W~~~~i~~~~~klK--dk--~~r~~~l~~l~RLlWvYL~~r~~Es~n~T~krL~~i~~~lfp~~kk~~i~~D~ 287 (552)
T PF14222_consen 213 EFF-LSNWLPSLIESLISKLK--DK--ETRPVALECLSRLLWVYLVYRCPESLNNTTKRLDSIFKLLFPKGKKGWIPRDP 287 (552)
T ss_pred HHH-HHHHHHHHHHHHHhhcC--Ch--hhhHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHccCCCCcccCCCh
Confidence 666 55666 57777777777 33 789999999999873 33 1111111 1 11346666654322 1334
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-HHhHHHHHHHHHHH--HhcCChHHHHHHHHHHHHHhHHH-HHhhhhcCCC-----CCC
Q 006201 234 KIRQAAFECLVAISSTYYEKL-APYIQDIFNITAKA--VREDEEPVALQAIEFWSSVCDEE-IDILEEYGGD-----FSG 304 (657)
Q Consensus 234 ~~~~~~~~~l~~l~~~~~~~~-~~~~~~l~~~~~~~--~~~~~~~v~~~a~~~~~~l~~~~-~~~~~~~~~~-----~~~ 304 (657)
......++.+.-++..++++. ...+-+++..-... +...+++--..+++....+.... ..-..+.-+. ...
T Consensus 288 ~~~~~lv~ii~~I~~~~~df~~~~iI~~LL~~~~~~s~~~~l~pERm~IgIRA~l~Il~~~e~~e~p~~p~~~~~~~~~~ 367 (552)
T PF14222_consen 288 EPLNPLVQIIRFIGYKHLDFAFRNIIFPLLNVSFNGSSLENLNPERMIIGIRAFLAILSDLEQKEKPPPPPPTSDPSGNT 367 (552)
T ss_pred hhhhhHHHHHHhHhhhCcchHHHHHHHHHHccccccccccccChhHHHHHHHHHHHHHHhhccCCCCCCCCCcCCCCCcc
Confidence 555566667766666666553 22222222211100 12334554455565555554431 1000000000 000
Q ss_pred ------C--CCCc----hhhHHHhhhhhHHHHHHHHhhh----------hcCccc--------------cCCCcchHhhh
Q 006201 305 ------D--SDIP----CFYFIKHALPVLVPLLLETLLK----------QEEDQD--------------QDEGAWNIAMA 348 (657)
Q Consensus 305 ------~--~~~~----~~~~~~~~l~~l~~~l~~~l~~----------~~~d~~--------------~d~~~~~~r~~ 348 (657)
. ..++ ...-++.+.+++...+.+.+.. .++... ..+|..+..+.
T Consensus 368 ~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~il~~cD~~~G~~~~~~~~~~~~~~~t~~~~f~f~~~~d~~~~~~~ 447 (552)
T PF14222_consen 368 LRVKYTPSNEYLSNEIAKNSGIREYYEEFCRALGKILRLCDNTFGSQLWLDEKQSSSKPKTPFSSFSFGRNDDMVTDQKP 447 (552)
T ss_pred cccccCcccccccchhhccccHHHHHHHHHHHHHHHHHHHHHHhchhhccCcccccCCCCCCcccccccccccccccccc
Confidence 0 0000 0011223333333332222110 001000 00111122234
Q ss_pred HHHHHHHHHhhcC----CC-chhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCC
Q 006201 349 GGTCLGLVARTVG----DD-IVPLVMPFVEENITKQEWRQREAATYAFGSILEGP 398 (657)
Q Consensus 349 a~~~L~~l~~~~~----~~-~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~ 398 (657)
..+.+.+...+.| +. -...+++++..+.-+.+..+|++|..+|..++...
T Consensus 448 ~~~Lf~t~i~aiPrcL~~~i~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~ 502 (552)
T PF14222_consen 448 QLDLFRTCIQAIPRCLPSSIPFKSLIELLCRGTVHVDPNIRESAAQALKRLARDK 502 (552)
T ss_pred hhHHHHHHHHHccccCCCCCcHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcC
Confidence 4466666666554 22 24568888888888889999999999999999764
No 327
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=65.47 E-value=90 Score=28.59 Aligned_cols=66 Identities=17% Similarity=0.312 Sum_probs=44.3
Q ss_pred chHHHHHhhhcCcc-hhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhh
Q 006201 367 LVMPFVEENITKQE-WRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFL 441 (657)
Q Consensus 367 ~l~~~l~~~l~~~~-~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~ 441 (657)
.+.+.+.....+++ |..|-|.+..+. ..+... ...+...+...+ .|++..|+.+.-|+|..+++.-
T Consensus 115 ~~~~~l~~W~~s~~~W~rR~ai~~~l~-~~~~~~-------~~~l~~~~~~~~-~d~e~fI~KAiGW~LRe~~k~d 181 (208)
T cd07064 115 EFEPVMDEWSTDENFWLRRTAILHQLK-YKEKTD-------TDLLFEIILANL-GSKEFFIRKAIGWALREYSKTN 181 (208)
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHH-HHHccC-------HHHHHHHHHHhC-CChHHHHHHHHHHHHHHHhccC
Confidence 33566667777776 777766654444 332211 133445566677 9999999999999999999864
No 328
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=64.98 E-value=77 Score=26.00 Aligned_cols=34 Identities=15% Similarity=0.408 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHH
Q 006201 258 IQDIFNITAKAVREDEEPVALQAIEFWSSVCDEE 291 (657)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~ 291 (657)
..++++.+.+.+++.++.|+.-++..+..+|...
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G 69 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKG 69 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhC
Confidence 3467888888899988999999999999988754
No 329
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=62.64 E-value=1.3e+02 Score=27.97 Aligned_cols=141 Identities=10% Similarity=0.031 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHhhhcc--ccccchhhH-hHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHH
Q 006201 146 HTKQATLETLGYICEEVS--SDAVEQDHV-NKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMR 222 (657)
Q Consensus 146 ~~~~~~l~~l~~i~~~~~--~~~l~~~~~-~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~ 222 (657)
...-.++..|..++.+-+ ...+ +.++ -.++|.+.....+ .+.+-.|..++..++.++..-++.....-...++++
T Consensus 94 nRVcnaL~LlQcvASHpdTr~~FL-~A~iPlylYpfL~Tt~~~-r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP 171 (293)
T KOG3036|consen 94 NRVCNALALLQCVASHPDTRRAFL-RAHIPLYLYPFLNTTSKS-RPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP 171 (293)
T ss_pred chHHHHHHHHHHHhcCcchHHHHH-HccChhhhHHhhhccccC-CchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence 444566666666655421 1112 2222 2356666555553 567779999999999988643221111111245777
Q ss_pred HHHhhccCCcHHHHHHHHHHHHHHHHHH---------HHhhHHhHHHHHHH-HHHHHhcCChHHHHHHHHHHHHHhH
Q 006201 223 VVCEATLSPEVKIRQAAFECLVAISSTY---------YEKLAPYIQDIFNI-TAKAVREDEEPVALQAIEFWSSVCD 289 (657)
Q Consensus 223 ~l~~~~~~~~~~~~~~~~~~l~~l~~~~---------~~~~~~~~~~l~~~-~~~~~~~~~~~v~~~a~~~~~~l~~ 289 (657)
...+.+..+++.-+..+.-.+..+.... .+.|. ++..++.- +.+..+..++..-..+++....+++
T Consensus 172 lCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~-av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd 247 (293)
T KOG3036|consen 172 LCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFS-AVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD 247 (293)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 7778887778777777777777765432 12221 12233332 2334445666666777777777765
No 330
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.61 E-value=30 Score=31.07 Aligned_cols=92 Identities=16% Similarity=0.155 Sum_probs=65.8
Q ss_pred hchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCc
Q 006201 366 PLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGST 445 (657)
Q Consensus 366 ~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~ 445 (657)
..+++.+.+.+...+.-+|.-|-..+..+.... .+.+.+.+++++..+..+| ...+.+|...+++++.++..... +
T Consensus 113 ~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~-g~kilpVLPqLI~plK~al-~trd~ev~~~~Lkvlq~lv~~~~--~ 188 (262)
T KOG3961|consen 113 CPYLPLFFDGLAETDHPYRFVARQGITDLLLAG-GEKILPVLPQLILPLKAAL-VTRDDEVICRTLKVLQQLVVSVG--C 188 (262)
T ss_pred hHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhc-ccccccccHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHhcc--c
Confidence 455667777777777677777777766655443 3777888999999999999 99999999999999999987642 1
Q ss_pred CCCccCCcccHHHHHHHH
Q 006201 446 LETPIINQGNCQQIISVL 463 (657)
Q Consensus 446 ~~~~~~~~~~~~~il~~l 463 (657)
+ .....+|..+++|.+
T Consensus 189 v--G~aLVPfYRQlLp~~ 204 (262)
T KOG3961|consen 189 V--GAALVPFYRQLLPVL 204 (262)
T ss_pred c--chhhhhHHHHhhhhh
Confidence 0 112345566666554
No 331
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=62.50 E-value=96 Score=26.27 Aligned_cols=81 Identities=4% Similarity=0.041 Sum_probs=55.1
Q ss_pred cHHHHHHHHHHHcc-c-chHHHHHHHHHHHHHHhhccCCCCCCCCCch--hHHHHHHH-HHHhhccccchhhhHHHHHHH
Q 006201 455 NCQQIISVLLQSMK-D-VPNVAEKACGALYFLAQGFEDAISPSSPLTP--FFQEIVQA-LLTVTHREDAGESRLRTAAYE 529 (657)
Q Consensus 455 ~~~~il~~l~~~l~-d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~--~~~~i~~~-L~~~l~~~~~~~~~~~~~~~~ 529 (657)
.-...+..+.+.|. . ++.++..|...+..++++|+. .+.. --..++.. |.+++......+..++..+++
T Consensus 35 ~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~------~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~ 108 (141)
T cd03565 35 GPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGH------RFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLA 108 (141)
T ss_pred cHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccH------HHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHH
Confidence 34677788888886 3 688999999999999999864 1211 11355655 666665322113577888888
Q ss_pred HHHHHHHhcccc
Q 006201 530 TLNEVVRCSTDE 541 (657)
Q Consensus 530 al~~l~~~~~~~ 541 (657)
.+.......+.+
T Consensus 109 li~~W~~~f~~~ 120 (141)
T cd03565 109 LIQAWADAFRGS 120 (141)
T ss_pred HHHHHHHHhCCC
Confidence 888888887653
No 332
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.43 E-value=1.6e+02 Score=28.85 Aligned_cols=307 Identities=12% Similarity=0.105 Sum_probs=157.7
Q ss_pred CCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhc
Q 006201 128 QWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFA 207 (657)
Q Consensus 128 ~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~ 207 (657)
.++-++..+. .-.+++......++.++..+...- |+.+......-++ ..|.....+.++-...+.++..-.-.
T Consensus 105 a~~~~it~~~-la~~~~~~~l~ksL~al~~lt~~q-pdl~da~g~~vvv----~lL~~~~~~~dlt~~~~~~v~~Ac~~- 177 (461)
T KOG4199|consen 105 AHDALITLLE-LAESPNESVLKKSLEAINSLTHKQ-PDLFDAEAMAVVL----KLLALKVESEEVTLLTLQWLQKACIM- 177 (461)
T ss_pred CcchhhhHHH-HhhCCchhHHHHHHHHHHHhhcCC-cchhccccHHHHH----HHHhcccchHHHHHHHHHHHHHHHHH-
Confidence 4555555444 356778888888999998888777 7777333333333 33332245667777777776653321
Q ss_pred hhhcCChhhHH-----HHHHHHHhhccC-CcHHHHHHHHHHHHHHHHHHHHh--hH---HhHHHH-----HHHHHHHHh-
Q 006201 208 QANFSNDMERD-----YIMRVVCEATLS-PEVKIRQAAFECLVAISSTYYEK--LA---PYIQDI-----FNITAKAVR- 270 (657)
Q Consensus 208 ~~~~~~~~~~~-----~il~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~--~~---~~~~~l-----~~~~~~~~~- 270 (657)
++..+. .+++.+.+.+.. ...++....++.+..+.....-. |. .|-+.+ +..+...++
T Consensus 178 -----hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A 252 (461)
T KOG4199|consen 178 -----HEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQA 252 (461)
T ss_pred -----hHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHc
Confidence 122222 234444443332 23345567777777665321100 00 111111 222222222
Q ss_pred cCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhh-hHHHHHHHHhhhhcCccccCCCcchHhhhH
Q 006201 271 EDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALP-VLVPLLLETLLKQEEDQDQDEGAWNIAMAG 349 (657)
Q Consensus 271 ~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a 349 (657)
-.+|++-......+..++-.. .+.+.+.+ -=+..++.+|.+..+ ...|..+
T Consensus 253 ~~dp~~L~~l~~tl~~lAVr~--------------------E~C~~I~e~GGl~tl~~~i~d~n~--------~~~r~l~ 304 (461)
T KOG4199|consen 253 GIDPDSLVSLSTTLKALAVRD--------------------EICKSIAESGGLDTLLRCIDDSNE--------QGNRTLA 304 (461)
T ss_pred cCCccHHHHHHHHHHHHHHHH--------------------HHHHHHHHccCHHHHHHHHhhhch--------hhHHHHH
Confidence 123444333333333333210 01111100 002344454543221 2456667
Q ss_pred HHHHHHHHhhcCC----------CchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHH-HHHHHHHHHh
Q 006201 350 GTCLGLVARTVGD----------DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVN-IALNFMLTAL 418 (657)
Q Consensus 350 ~~~L~~l~~~~~~----------~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~-~i~~~l~~~l 418 (657)
..|++.+....|. ..++.++....... +++.+-+.++.+++.++--. ++.-..++. ..-...+..+
T Consensus 305 k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~--~~p~Vi~~~~a~i~~l~LR~-pdhsa~~ie~G~a~~avqAm 381 (461)
T KOG4199|consen 305 KTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHS--DDPLVIQEVMAIISILCLRS-PDHSAKAIEAGAADLAVQAM 381 (461)
T ss_pred HHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcC--CChHHHHHHHHHHHHHHhcC-cchHHHHHhcchHHHHHHHH
Confidence 7777777666553 23455555555543 44577777877777776432 333222222 1223344444
Q ss_pred cCCC-cHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHH
Q 006201 419 MQDP-NNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFL 484 (657)
Q Consensus 419 ~~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l 484 (657)
..+| +..|++.++|.+.++...-. ......+..-++.|+..-.. ++..+..|-.||..+
T Consensus 382 kahP~~a~vQrnac~~IRNiv~rs~-------~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 382 KAHPVAAQVQRNACNMIRNIVVRSA-------ENRTILLANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHhhh-------hccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 2233 56789999999999988754 24566777777777776553 667777777777654
No 333
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=62.13 E-value=1.7e+02 Score=29.32 Aligned_cols=95 Identities=12% Similarity=0.182 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhccCCCCCCCCCchhHH
Q 006201 424 NHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQ 503 (657)
Q Consensus 424 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~ 503 (657)
..+......+|..+..+.. ...+..-+.++..+..++.+ +....+..||.-.|-.+ +..+.++++
T Consensus 211 ~D~~~~~~~~Ls~LisYh~-------~~~k~~qd~iV~~l~~GL~s--~~a~~CI~aLtic~~Em------P~s~~k~L~ 275 (356)
T PF03542_consen 211 ADLQVCVFPVLSALISYHS-------HFSKQEQDEIVRALESGLGS--KTAKPCIHALTICCYEM------PDSMKKLLP 275 (356)
T ss_pred HHHHHHHHHHHHHHHHHHH-------hcCHhHHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHh------HHHHHHHHH
Confidence 3456666777777777643 13455567888888888875 34455666676666544 345678888
Q ss_pred HHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhc
Q 006201 504 EIVQALLTVTHREDAGESRLRTAAYETLNEVVRCS 538 (657)
Q Consensus 504 ~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~ 538 (657)
.++..|.+...... +-..+++.|+.++..=
T Consensus 276 ~iL~kLs~i~tt~~-----~Ai~ILEFLs~L~~lP 305 (356)
T PF03542_consen 276 SILLKLSKISTTPN-----MAIHILEFLSSLSRLP 305 (356)
T ss_pred HHHHHHHhhccchh-----hHHHHHHHHHHHhhCc
Confidence 88887776665432 3335677777666543
No 334
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=60.85 E-value=1.2e+02 Score=32.79 Aligned_cols=278 Identities=17% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHH---------hHHHHHH
Q 006201 193 RLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAP---------YIQDIFN 263 (657)
Q Consensus 193 r~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~---------~~~~l~~ 263 (657)
++.++.|+..+.++.+-..........+ +...+...++.-.++++.++....-....| ++..+++
T Consensus 176 ~Rs~~~cl~~l~qflki~~qS~e~a~fy------~~g~e~s~L~~~l~~~lS~lGi~llP~~~pi~sN~~sh~~l~~iV~ 249 (993)
T COG5234 176 KRSIFYCLFSLSQFLKICLQSVEVAQFY------LVGQENSALRKLLCKCLSRLGIVLLPVNLPIDSNEESHIYLEVIVD 249 (993)
T ss_pred HHHHHHHHHHHHHHHHHhheecccceeE------EecccHHHHHHHHHHHhhhcCceecccccCcccCcchhHHHHHHHH
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHH-HHHHhhhhcCccccCCCc
Q 006201 264 ITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPL-LLETLLKQEEDQDQDEGA 342 (657)
Q Consensus 264 ~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-l~~~l~~~~~d~~~d~~~ 342 (657)
++.....+.+..+|-.+...+..++..-+-..-+ .+++ .++-..+. .+.-+...-|--...+-.
T Consensus 250 f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~--------------sfi~-ii~~~~en~~~s~l~~~cdii~tnel~ 314 (993)
T COG5234 250 FLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAE--------------SFID-IIELMTENMFLSPLENTCDIIITNELV 314 (993)
T ss_pred HHHcCcccccHHHHHHHHhhHHHHHhhcccccHH--------------HHHH-HHHhcccccchhhhhCccceeecchHH
Q ss_pred chHhhhHHHHHHHHHhhcCCCchh-chHHHHHhhhc--------CcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHH
Q 006201 343 WNIAMAGGTCLGLVARTVGDDIVP-LVMPFVEENIT--------KQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNF 413 (657)
Q Consensus 343 ~~~r~~a~~~L~~l~~~~~~~~~~-~l~~~l~~~l~--------~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~ 413 (657)
| ...-+.-.++...+-++.. .+.+++...+. ...-.+|+++++.+.++..+.+....+..-..++..
T Consensus 315 w----~~~i~~~ala~~~~id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hl 390 (993)
T COG5234 315 W----HGAILFFALAGAGLIDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHL 390 (993)
T ss_pred H----HHHHHHHHHhhccccchhhhhhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHH
Q ss_pred HHH-HhcCCCcHHHHHHHHHHH--------------------------------HHHHhhhccCcCCCccCCcccHHHHH
Q 006201 414 MLT-ALMQDPNNHVKDTTAWTL--------------------------------GRMFEFLHGSTLETPIINQGNCQQII 460 (657)
Q Consensus 414 l~~-~l~~d~~~~vr~~a~~~l--------------------------------~~l~~~~~~~~~~~~~~~~~~~~~il 460 (657)
++. .+ -||+-.+|++|.-++ |.++..+. |.....-...+.
T Consensus 391 l~~~al-FDpel~vRr~a~Aal~E~iGR~~s~a~g~~lIslIN~~sv~r~s~csg~~~r~~~------~~~k~~~CedVF 463 (993)
T COG5234 391 LLQTAL-FDPELNVRRAATAALFEVIGRHASIADGLSLISLINYVSVTRISNCSGDLCRKVA------HFPKFRSCEDVF 463 (993)
T ss_pred HHhhhh-cCchhhhhhHHHHHHHHHhccCCCcccchhhhhhccceecchhhhcchHHHHHhc------CccccchHHHHH
Q ss_pred HH-HHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHH
Q 006201 461 SV-LLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQAL 509 (657)
Q Consensus 461 ~~-l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L 509 (657)
+- |++.|.- .++++......+..+++. +..+.-|+++++..+
T Consensus 464 ~diLl~Nl~H~~~~~k~~~~y~l~~liK~-------~~~~p~yl~~Il~k~ 507 (993)
T COG5234 464 QDILLTNLQHWDVKVKQLSAYSLRQLIKY-------PKELPIYLPPILDKL 507 (993)
T ss_pred HHHHHhhhhccchhhhhhccccHHHHhcC-------cccCchhhhHHhhhC
No 335
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.20 E-value=51 Score=31.68 Aligned_cols=64 Identities=16% Similarity=0.051 Sum_probs=39.5
Q ss_pred HhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Q 006201 373 EENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEF 440 (657)
Q Consensus 373 ~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~ 440 (657)
.+.+.+.++.+|.+|+..+..+..+ ....+..+-...++.+.+.+ ++..+ -.-|..++.+++..
T Consensus 9 v~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~-~~~~~--~~~a~~alVnlsq~ 72 (353)
T KOG2973|consen 9 VELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLL-KDLDP--AEPAATALVNLSQK 72 (353)
T ss_pred HHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHc-cCccc--ccHHHHHHHHHHhh
Confidence 3556778889999999887776654 23444444445566677766 66555 33344555566554
No 336
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=58.63 E-value=25 Score=26.97 Aligned_cols=56 Identities=7% Similarity=0.014 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHcccchHHHHHHHHHHHHHHhh
Q 006201 425 HVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQG 487 (657)
Q Consensus 425 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~l~~~ 487 (657)
.-|.++...|+.+...++ +..+++++.++..|.+...|...++..+-.+|..|-+.
T Consensus 4 ~~rH~~VLGL~Alv~a~P-------y~vP~w~P~~l~~La~~~~~~~~I~~tvk~tl~eFkrt 59 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFP-------YDVPPWMPEVLEELARHANDPQPIRTTVKKTLSEFKRT 59 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S---------SS-HHHHHHHHHHTTSSS-SSHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC-------CCCcccHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHh
Confidence 457788888888888874 56778999998888887777667888888888888754
No 337
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=57.30 E-value=2.2e+02 Score=28.85 Aligned_cols=70 Identities=11% Similarity=0.105 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHH--HHHHHHHHcc-cchHHHHHHHHHHHHHH
Q 006201 409 IALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQ--IISVLLQSMK-DVPNVAEKACGALYFLA 485 (657)
Q Consensus 409 ~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~--il~~l~~~l~-d~~~v~~~a~~al~~l~ 485 (657)
+++..+++.|..+.+|.+-.-|+.=+|++....|. ....+.+ .=..+.+.++ ++++||-.|..|+..++
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~--------gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPE--------GKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCch--------HhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 46677777772334488888889999999998751 1222211 1233444555 47999999999998876
Q ss_pred h
Q 006201 486 Q 486 (657)
Q Consensus 486 ~ 486 (657)
-
T Consensus 438 ~ 438 (442)
T KOG2759|consen 438 V 438 (442)
T ss_pred h
Confidence 4
No 338
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=57.13 E-value=26 Score=22.92 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhh
Q 006201 89 VKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIE 123 (657)
Q Consensus 89 ~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~ 123 (657)
..+++|+.+++.|..+++..|.++..+|+++.+..
T Consensus 4 ~~eYLKNvl~~fl~~~~~~~~~~llpvi~tlL~fs 38 (46)
T PF01465_consen 4 NLEYLKNVLLQFLESREPSEREQLLPVIATLLKFS 38 (46)
T ss_dssp HHHHHHHHHHHHHTTSS---HHHHHHHHHHHTT--
T ss_pred hHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHCCC
Confidence 56789999999999888888888889998887654
No 339
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=56.47 E-value=1.9e+02 Score=27.66 Aligned_cols=138 Identities=17% Similarity=0.152 Sum_probs=78.0
Q ss_pred HHHHHhcCCCC----hHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchh
Q 006201 95 SFILKTLSSPA----HDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQD 170 (657)
Q Consensus 95 ~~ll~~l~~~~----~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~ 170 (657)
+.+++.+.+++ .......|..|+.++... ..+++-..+.......-.......-.++..+.+.+ + .+
T Consensus 114 P~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~----~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f----~-P~ 184 (262)
T PF14225_consen 114 PRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQ----GLPNLARILSSYAKGRFRDKDDFLSQVVSYLREAF----F-PD 184 (262)
T ss_pred HHHHHHhcccccccccHHHHHHHHHHHHHHHhC----CCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh----C-ch
Confidence 34444555555 134457778888888542 45565444444433322122222333344444443 2 34
Q ss_pred hHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHH
Q 006201 171 HVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISST 249 (657)
Q Consensus 171 ~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 249 (657)
+..+++..+...+. .....+|..+++++..++..++-. .. ....++..+.++++.+-+. .+++.|..++..
T Consensus 185 ~~~~~l~~Ll~lL~--n~~~w~~~~~L~iL~~ll~~~d~~--~~-~~~dlispllrlL~t~~~~---eAL~VLd~~v~~ 255 (262)
T PF14225_consen 185 HEFQILTFLLGLLE--NGPPWLRRKTLQILKVLLPHVDMR--SP-HGADLISPLLRLLQTDLWM---EALEVLDEIVTR 255 (262)
T ss_pred hHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHhccccCC--CC-cchHHHHHHHHHhCCccHH---HHHHHHHHHHhh
Confidence 44556667777777 567789999999999988876422 11 2245777778888765554 455555444443
No 340
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=56.33 E-value=1.4e+02 Score=29.76 Aligned_cols=75 Identities=5% Similarity=-0.051 Sum_probs=55.0
Q ss_pred hchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHH--HHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhc
Q 006201 366 PLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV--NIALNFMLTALMQ-DPNNHVKDTTAWTLGRMFEFLH 442 (657)
Q Consensus 366 ~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~--~~i~~~l~~~l~~-d~~~~vr~~a~~~l~~l~~~~~ 442 (657)
...+.+|...+.+.+..+..-|+..++++...|+ +.+...+ ......+...+ . ..|+.|+...-.++.++++.+.
T Consensus 44 kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg-~~~r~EVsSr~F~~el~al~-~~~~h~kV~~k~~~lv~eWsee~K 121 (462)
T KOG2199|consen 44 KDCLKAIMKRLNHKDPHVVLQALTLLDACVANCG-KRFRLEVSSRDFTTELRALI-ESKAHPKVCEKMRDLVKEWSEEFK 121 (462)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcc-hHHHHHHhhhhHHHHHHHHH-hhcccHHHHHHHHHHHHHHHHHhc
Confidence 3455667777888888999999999999999985 4332222 22334455555 4 6799999999999999999876
No 341
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.85 E-value=3.4e+02 Score=30.18 Aligned_cols=200 Identities=14% Similarity=0.064 Sum_probs=127.5
Q ss_pred HHHHHHHHhcCC-ChHHHHHHHHHHHHHHhc----CcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhh----
Q 006201 4 EVTQILLNAQSV-DGTVRKQAEESLKQYQEQ----NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHR---- 74 (657)
Q Consensus 4 ~l~~~l~~~~s~-d~~~r~~A~~~L~~~~~~----~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~---- 74 (657)
.+..+...+.+. =.+-|+.|..-|+.+.++ -...-+..|++.|.....+++.-..+.-.+-+.+....++.
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dd 102 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDD 102 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhccc
Confidence 455555555443 368899999999877654 12344667888888767788888888877777776553221
Q ss_pred --HHHhhhhcccCChH--HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC-----CCCchHHHHHHHhhcCCCh
Q 006201 75 --KFELVQRWLSLDSS--VKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH-----KQWPELIGALLSNIHQLPP 145 (657)
Q Consensus 75 --~~~~~~~~~~l~~~--~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~-----~~~~~l~~~l~~~l~~~~~ 145 (657)
+......|- .+. -.+.....+++.+...+-.||..+.+.++.+.+...++ -..|.=+..+...+.|..+
T Consensus 103 s~qsdd~g~~i--ae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE 180 (970)
T KOG0946|consen 103 STQSDDLGLWI--AEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSRE 180 (970)
T ss_pred chhhhHHHHHH--HHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhh
Confidence 111112221 110 00112235666667778899999999999999876432 1457777888888899889
Q ss_pred hHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCC--CCHHHHHHHHHHHHHHHhh
Q 006201 146 HTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASE--SNNDVRLAATRALYNALGF 206 (657)
Q Consensus 146 ~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~--~~~~vr~~al~~l~~~~~~ 206 (657)
.+|..++..|..+++.. +..-.--..+.++..++..+.... .+--|..-++..+.+++.+
T Consensus 181 ~IRNe~iLlL~eL~k~n-~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~ 242 (970)
T KOG0946|consen 181 PIRNEAILLLSELVKDN-SSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKN 242 (970)
T ss_pred hhchhHHHHHHHHHccC-chHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhh
Confidence 99999999999998876 321101234556666666665311 1224566677777776654
No 342
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=54.84 E-value=2.4e+02 Score=28.38 Aligned_cols=95 Identities=19% Similarity=0.260 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHH
Q 006201 189 NNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKA 268 (657)
Q Consensus 189 ~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~ 268 (657)
..++......+|..++.|-. .+.+ ...+.++..+...+.. +....++..|.-.+-.-|..+..+++.++..+-+.
T Consensus 210 ~~D~~~~~~~~Ls~LisYh~-~~~k-~~qd~iV~~l~~GL~s---~~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i 284 (356)
T PF03542_consen 210 RADLQVCVFPVLSALISYHS-HFSK-QEQDEIVRALESGLGS---KTAKPCIHALTICCYEMPDSMKKLLPSILLKLSKI 284 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcCH-hHHHHHHHHHHHHhcc---CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 45778888899999888743 2322 2236777777665533 23445666666655556777777777777655443
Q ss_pred HhcCChHHHHHHHHHHHHHhHH
Q 006201 269 VREDEEPVALQAIEFWSSVCDE 290 (657)
Q Consensus 269 ~~~~~~~v~~~a~~~~~~l~~~ 290 (657)
.. ...+..-.+||+..++.-
T Consensus 285 ~t--t~~~Ai~ILEFLs~L~~l 304 (356)
T PF03542_consen 285 ST--TPNMAIHILEFLSSLSRL 304 (356)
T ss_pred cc--chhhHHHHHHHHHHHhhC
Confidence 33 344666789999998863
No 343
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=54.42 E-value=21 Score=21.96 Aligned_cols=25 Identities=12% Similarity=0.070 Sum_probs=11.1
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHH
Q 006201 134 GALLSNIHQLPPHTKQATLETLGYI 158 (657)
Q Consensus 134 ~~l~~~l~~~~~~~~~~~l~~l~~i 158 (657)
+.|.+.+.+++..++..++.+|..+
T Consensus 15 ~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 15 PALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 344
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=54.39 E-value=89 Score=25.21 Aligned_cols=75 Identities=16% Similarity=0.216 Sum_probs=50.6
Q ss_pred CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhH-hH-HHHHHHh----ccCCCCCCHHHHHHHHHHH
Q 006201 127 KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHV-NK-ILTAVVQ----GMNASESNNDVRLAATRAL 200 (657)
Q Consensus 127 ~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~-~~-l~~~l~~----~l~~~~~~~~vr~~al~~l 200 (657)
....+.+..|...+.+.++.....+|.++..+++.. ++.+ ...+ .. ....++. .....+.+..||..+...+
T Consensus 33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~-g~~f-~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~ 110 (115)
T cd00197 33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNC-GERF-HQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELV 110 (115)
T ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHc-cHHH-HHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHH
Confidence 356788899999999999999999999999999988 4433 1211 11 1111111 1221256889999998887
Q ss_pred HHH
Q 006201 201 YNA 203 (657)
Q Consensus 201 ~~~ 203 (657)
..+
T Consensus 111 ~~w 113 (115)
T cd00197 111 QLW 113 (115)
T ss_pred HHH
Confidence 765
No 345
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=54.21 E-value=1.7e+02 Score=26.42 Aligned_cols=109 Identities=14% Similarity=0.127 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC-CCCchHHHHHHHhhcCCCh--hHHHHHHHHHHHHhhhccccc
Q 006201 90 KAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH-KQWPELIGALLSNIHQLPP--HTKQATLETLGYICEEVSSDA 166 (657)
Q Consensus 90 ~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~-~~~~~l~~~l~~~l~~~~~--~~~~~~l~~l~~i~~~~~~~~ 166 (657)
...+...+++.-.+.-..||..|+.++..+.....+. ...| -.+.+...+..+.. ......-.++..+++-..
T Consensus 5 ~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~--- 80 (193)
T PF12612_consen 5 VQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLD--- 80 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhc---
Confidence 3444445555555555799999999999999544331 1223 23445554443321 112223334444443221
Q ss_pred cchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHh
Q 006201 167 VEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALG 205 (657)
Q Consensus 167 l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 205 (657)
+ ..+...++..++-... ..+..+.+.+..+|..++.
T Consensus 81 ~-~~y~~~ll~Glv~S~G--~~tesl~~~s~~AL~~~~~ 116 (193)
T PF12612_consen 81 L-PEYRYSLLSGLVVSAG--GLTESLVRASSAALLSYLR 116 (193)
T ss_pred c-HHHHHHHHhHHHhcCC--CCchhHHHHHHHHHHHHHH
Confidence 1 2344555655555554 4566777777777777543
No 346
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=54.16 E-value=3e+02 Score=29.42 Aligned_cols=104 Identities=12% Similarity=0.053 Sum_probs=64.6
Q ss_pred hccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCC
Q 006201 227 ATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDS 306 (657)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~ 306 (657)
-..+-++.+|..+...+...+...|+++.... .+...--.+.|.+..+|.+....+..++...+.
T Consensus 283 Ry~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~--~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~------------- 347 (740)
T COG5537 283 RYIDVDDVIRVLCSMSLRDWIGLVPDYFRKIL--GLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPH------------- 347 (740)
T ss_pred hccchhHHHHHHHHHHHHHHHhcchHHHHhhh--cccccccccccchHHHHHHHHHHHHHHHhcCCc-------------
Confidence 33466778888899999998888887765422 233332345677888999988888888876432
Q ss_pred CCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHh
Q 006201 307 DIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVAR 358 (657)
Q Consensus 307 ~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~ 358 (657)
...++..++..-..++...... .+ -+|.++.+.+..+..
T Consensus 348 ----~d~ir~f~eRFk~rILE~~r~D-------~d--~VRi~sik~l~~lr~ 386 (740)
T COG5537 348 ----TDAIRRFVERFKDRILEFLRTD-------SD--CVRICSIKSLCYLRI 386 (740)
T ss_pred ----chHHHHHHHHHHHHHHHHHhhc-------cc--hhhHHHHHHHHHHHH
Confidence 1234444444444444433321 11 278888777776654
No 347
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=53.38 E-value=1.8e+02 Score=26.44 Aligned_cols=57 Identities=14% Similarity=0.122 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhc
Q 006201 147 TKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFA 207 (657)
Q Consensus 147 ~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~ 207 (657)
.....+.+++.+++... ... .+.+..++..+.+.-. +.+...|..+=+|++..+..+
T Consensus 16 aw~~vl~v~s~lf~~lg-~~~-~~~l~~~L~~l~~lr~--~~~f~~~~~~e~~lgaAi~am 72 (198)
T PF08161_consen 16 AWPEVLNVLSALFEKLG-ERS-SPLLKPILKTLGDLRE--SEDFSFRKELEQVLGAAIRAM 72 (198)
T ss_pred HHHHHHHHHHHHHHHHh-hhc-cHHHHHHHHHHHHHHc--CCCcchHHHHHHHHHHHHHHC
Confidence 34445666666666652 222 3555666666665555 445677777778888777643
No 348
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=52.30 E-value=2.2e+02 Score=27.21 Aligned_cols=186 Identities=18% Similarity=0.212 Sum_probs=110.1
Q ss_pred chhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCC-------CCcchHHHHHHHHHHHHHhcCCCc-----HHHHHHHH
Q 006201 364 IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPS-------PEKLVPLVNIALNFMLTALMQDPN-----NHVKDTTA 431 (657)
Q Consensus 364 ~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~-------~~~~~~~~~~i~~~l~~~l~~d~~-----~~vr~~a~ 431 (657)
-++-+.+.+..++.++. --+.++..+..+..-.+ ...+--.+-..+|.++..+ .++. +.++.. +
T Consensus 61 ~f~Glq~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~-d~~~~i~~~~~~~~~-A 136 (262)
T PF14225_consen 61 NFEGLQPLLLKGLRSSS--TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAF-DDPNPIQPDQECIEI-A 136 (262)
T ss_pred CchhHHHHHhCccCCCC--cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHh-cccccccccHHHHHH-H
Confidence 45667777777777654 23445666666554321 1122223445678888888 6666 445544 4
Q ss_pred HHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHH-cccchHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHH
Q 006201 432 WTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQS-MKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALL 510 (657)
Q Consensus 432 ~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~-l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~ 510 (657)
..+++.++..+ .+.+..++....+. .++...--..++..|. +.+ +..+--.++..|+
T Consensus 137 ~~La~~a~~~~----------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~---~~f---------~P~~~~~~l~~Ll 194 (262)
T PF14225_consen 137 EALAQVAEAQG----------LPNLARILSSYAKGRFRDKDDFLSQVVSYLR---EAF---------FPDHEFQILTFLL 194 (262)
T ss_pred HHHHHHHHhCC----------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHH---HHh---------CchhHHHHHHHHH
Confidence 66777775432 34566666666553 2232333334444443 322 2345567777888
Q ss_pred HhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHH
Q 006201 511 TVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQ 590 (657)
Q Consensus 511 ~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 590 (657)
.++.+.. ..+|..++..|..++....-. .|.-..++.+++..++.. ....|++++..+..
T Consensus 195 ~lL~n~~---~w~~~~~L~iL~~ll~~~d~~-~~~~~dlispllrlL~t~----------------~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 195 GLLENGP---PWLRRKTLQILKVLLPHVDMR-SPHGADLISPLLRLLQTD----------------LWMEALEVLDEIVT 254 (262)
T ss_pred HHHhCCc---HHHHHHHHHHHHHHhccccCC-CCcchHHHHHHHHHhCCc----------------cHHHHHHHHHHHHh
Confidence 8887653 678889999999999887643 446666677777666531 12247777777777
Q ss_pred HhCCC
Q 006201 591 KLGSS 595 (657)
Q Consensus 591 ~~~~~ 595 (657)
..|..
T Consensus 255 ~s~s~ 259 (262)
T PF14225_consen 255 RSGSP 259 (262)
T ss_pred hcccc
Confidence 66543
No 349
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.71 E-value=1.7e+02 Score=30.18 Aligned_cols=134 Identities=10% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHhhhcCCCCC------chHHHHHHHhhcCC--ChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCC
Q 006201 114 QVVAKVAGIELPHKQW------PELIGALLSNIHQL--PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNA 185 (657)
Q Consensus 114 ~~l~~i~~~~~~~~~~------~~l~~~l~~~l~~~--~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~ 185 (657)
.|+|+++....|.-.| -.++|.+.+.++-. .....-..+..++.++.......+ -.-..+++.+++.++.
T Consensus 524 EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~L--la~a~~i~tlieLL~a 601 (791)
T KOG1222|consen 524 ECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARL--LAPAKLIDTLIELLQA 601 (791)
T ss_pred HHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHH--hCccccHHHHHHHHHh
Q ss_pred CCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHH------HHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHH
Q 006201 186 SESNNDVRLAATRALYNALGFAQANFSNDMERDYIMR------VVCEATLSPEVKIRQAAFECLVAISSTYYEKLAP 256 (657)
Q Consensus 186 ~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~------~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 256 (657)
...+.+.....+-.+..++. ++..+..+++ .++.++-+.+.++|+.+=.+|--+++...++.+.
T Consensus 602 ~QeDDEfV~QiiyVF~Q~l~-------He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWAKr 671 (791)
T KOG1222|consen 602 CQEDDEFVVQIIYVFLQFLK-------HELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWAKR 671 (791)
T ss_pred hcccchHHHHHHHHHHHHHH-------HHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHHHH
No 350
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=51.62 E-value=2.4e+02 Score=27.57 Aligned_cols=77 Identities=10% Similarity=0.202 Sum_probs=40.2
Q ss_pred cHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhccCCCCCCCCC-chhHHHHHHHHHHhhccccchhhhHHHHHHHHHHH
Q 006201 455 NCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPL-TPFFQEIVQALLTVTHREDAGESRLRTAAYETLNE 533 (657)
Q Consensus 455 ~~~~il~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l-~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~ 533 (657)
-++.+++.+.+.+...+ -......+..+|+.+.+. +..- ....-.++..|.+....+ ..+|..++..+-.
T Consensus 62 dle~vlnsi~sLi~~~~--~e~~e~~v~a~~ekva~q---~n~~~~~l~L~vLsnLfn~~d~~----~~aR~~Vy~~lv~ 132 (378)
T KOG2753|consen 62 DLECVLNSIVSLIKNAP--PEKVEEMVKAICEKVAKQ---PNDKTASLRLQVLSNLFNGVDKP----TPARYQVYMSLVT 132 (378)
T ss_pred hHHHHHHHHHHHHHhCC--HHHhHHHHHHHHHHHhcC---ccCCCcccHHHHHHHHHhccCCC----chHHHHHHHHHHH
Confidence 37777777777766421 122223333444443321 1122 223334444444444433 2388888888888
Q ss_pred HHHhccc
Q 006201 534 VVRCSTD 540 (657)
Q Consensus 534 l~~~~~~ 540 (657)
++..++.
T Consensus 133 la~~~~~ 139 (378)
T KOG2753|consen 133 LAASCKL 139 (378)
T ss_pred HHhhcce
Confidence 8887763
No 351
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=51.47 E-value=1.7e+02 Score=25.62 Aligned_cols=103 Identities=13% Similarity=0.110 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHHHHHHhcccccH------HHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCC
Q 006201 521 SRLRTAAYETLNEVVRCSTDETA------PMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGS 594 (657)
Q Consensus 521 ~~~~~~~~~al~~l~~~~~~~~~------~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 594 (657)
...|.-+++.+..+++..|..+. ++...+-..+...+-+... ++ +. .+-..+++++..+...++.
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~----~~-~~----~i~~~slri~~~l~~~~~~ 106 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLS----SS-DF----PIFSRSLRIFLTLLSRFRS 106 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHh----hh-hh----HHHHHHHHHHHHHHHHHHH
Confidence 35566788999999998886554 2333222333333333221 11 12 3444688899999988887
Q ss_pred CcchhhHhhHHHHHHHHHHHH-HHcccC--CcchhhHHHHHHHHHHH
Q 006201 595 SEQTKYVFMQYADQMMGLFLR-VFAIRS--ATAHEEAMLAIGALAYA 638 (657)
Q Consensus 595 ~~~~~~~~~~~~~~i~~~l~~-~l~~~~--~~v~~~~~~~l~~l~~~ 638 (657)
. +..-++.+++.++. .++.+. ..-|+-+++++..+.+-
T Consensus 107 ~------Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 107 H------LKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred H------HHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 7 77777888888777 555443 24566788888888763
No 352
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=50.95 E-value=1e+02 Score=26.15 Aligned_cols=47 Identities=28% Similarity=0.278 Sum_probs=29.8
Q ss_pred hhHHHHHHHHhc-CCChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhc
Q 006201 2 SAEVTQILLNAQ-SVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVN 48 (657)
Q Consensus 2 ~~~l~~~l~~~~-s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~ 48 (657)
++++.+++..++ ++|+++++.|-+.|-.++......|-..|-.++.+
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~~~l~pY~d~L~~Lldd 62 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLLTWKDPYLTPYKDNLENLLDD 62 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHhHHHHHHHHcCc
Confidence 556777777775 46788888888888877653223344444454543
No 353
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=50.82 E-value=28 Score=33.47 Aligned_cols=73 Identities=12% Similarity=0.149 Sum_probs=44.6
Q ss_pred hHHHHHHHhhcCCChh-HHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhh
Q 006201 131 ELIGALLSNIHQLPPH-TKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGF 206 (657)
Q Consensus 131 ~l~~~l~~~l~~~~~~-~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~ 206 (657)
+++..|+..+++.++. ....|+.=+..+++.. |+...--.-...-+.+++.++ .++++||-.|++++..++.+
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~-PE~~~vl~Kyg~k~~im~L~n--h~d~~VkfeAl~a~q~~i~~ 429 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRAS-PEINAVLSKYGVKEIIMNLIN--HDDDDVKFEALQALQTCISS 429 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhC-chHHHHHHHhhhHHHHHHHhc--CCCchhhHHHHHHHHHHHhh
Confidence 4566677777766554 2234555555666655 543210011222344677778 68899999999999998764
No 354
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=50.70 E-value=3.6e+02 Score=29.22 Aligned_cols=182 Identities=14% Similarity=0.176 Sum_probs=84.7
Q ss_pred hhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhh--ccCCcHHH----HHHHHHHH
Q 006201 170 DHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEA--TLSPEVKI----RQAAFECL 243 (657)
Q Consensus 170 ~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~--~~~~~~~~----~~~~~~~l 243 (657)
.....++..++.... ..+.++|..|+-|+..++.-....+...-....++..+... ...+.... +...++.+
T Consensus 278 k~lk~liK~~V~vWs--tge~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~nsk~~~~~tl~~i~Fl~~slvEL~ 355 (661)
T KOG2256|consen 278 KLLKKLIKAVVHVWS--TGEESLRVLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVRNSKFVTVNTLPLINFLQNSLVELL 355 (661)
T ss_pred HHHHHHHHHHheeec--cCCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHHHHHh
Confidence 344556666666666 45788999999998876542211111111111222222221 22222222 22233333
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHhcCCh-HH-------HHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHH
Q 006201 244 VAISSTYYEKLAPYIQDIFNITAKAVREDEE-PV-------ALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIK 315 (657)
Q Consensus 244 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~v-------~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (657)
+.=...+|...--|++++--++-+++..... .+ -..++++|..+..-..+. ..-.+
T Consensus 356 ~ld~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~----------------~s~lq 419 (661)
T KOG2256|consen 356 GLDLQVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLRVISFANGS----------------ASQLQ 419 (661)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----------------Hhhhh
Confidence 3323334444445677766666555543322 21 146888998877621100 01223
Q ss_pred hhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCC--CchhchHHHHHh
Q 006201 316 HALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD--DIVPLVMPFVEE 374 (657)
Q Consensus 316 ~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~--~~~~~l~~~l~~ 374 (657)
+.+-.++.+++..+.-.+. ..-+..|.-+...|..|+...|. .+.|.+++.+..
T Consensus 420 ~LvYpLvQvi~GvirLipT-----~qy~PLRlhcir~Li~Ls~ssg~fIPi~~ll~Eml~~ 475 (661)
T KOG2256|consen 420 PLVYPLVQVILGVIRLIPT-----PQYYPLRLHCIRSLISLSRSSGTFIPLSPLLVEMLKS 475 (661)
T ss_pred hhhhHHHHHHHHHhhhcCc-----ccchhHHHHHHHHHHHHHhhcCceeecHHHHHHHHHH
Confidence 3333344444333322111 12246777677777777766553 234444444443
No 355
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=50.56 E-value=2.7e+02 Score=27.73 Aligned_cols=155 Identities=14% Similarity=0.122 Sum_probs=90.8
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchh------hHhHHHHHHHhccCCCCCC--------HHHHHHHHH
Q 006201 133 IGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQD------HVNKILTAVVQGMNASESN--------NDVRLAATR 198 (657)
Q Consensus 133 ~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~------~~~~l~~~l~~~l~~~~~~--------~~vr~~al~ 198 (657)
+..+...+++........+++.|..++..-++... .+ .....++.++.--...... +.+|...++
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a-~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALA-REVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHH-HHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 67788888888877778999999998873311111 11 1123344443221110001 389999999
Q ss_pred HHHHHHhhchhhcCChhh-HHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhH------HHHHHHHHHHHhc
Q 006201 199 ALYNALGFAQANFSNDME-RDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYI------QDIFNITAKAVRE 271 (657)
Q Consensus 199 ~l~~~~~~~~~~~~~~~~-~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~------~~l~~~~~~~~~~ 271 (657)
.+.+++...+.....+.. ...++..++..+..++.++...++++|.+-+-..+ .+.... ...+..+......
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~-~v~r~~K~~~fn~~~L~~l~~Ly~~ 215 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDS-SVSRSTKCKLFNEWTLSQLASLYSR 215 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCC-CCChhhhhhhcCHHHHHHHHHHhcc
Confidence 988887654322211110 12347777888877888888888888886443322 122111 2344444444444
Q ss_pred CCh----HHHHHHHHHHHHHhH
Q 006201 272 DEE----PVALQAIEFWSSVCD 289 (657)
Q Consensus 272 ~~~----~v~~~a~~~~~~l~~ 289 (657)
.++ .++..+-+|+..+|.
T Consensus 216 ~~~~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 216 DGEDEKSSVADLVHEFLLALCT 237 (330)
T ss_pred cCCcccchHHHHHHHHHHHHhc
Confidence 444 788888899888885
No 356
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=50.45 E-value=2.3e+02 Score=26.93 Aligned_cols=178 Identities=13% Similarity=0.185 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHhhhccC-cCCCccCCcccHHHHHHHHHHHccc--chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHH
Q 006201 428 DTTAWTLGRMFEFLHGS-TLETPIINQGNCQQIISVLLQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQE 504 (657)
Q Consensus 428 ~~a~~~l~~l~~~~~~~-~~~~~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~ 504 (657)
+.+..+++.+....+-. .........+.+..+-..++..|.. +.-+-..+..++..+|+.+-. .....+...-..
T Consensus 65 KE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~--~~~~~l~~LP~~ 142 (255)
T PF10350_consen 65 KESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWS--SNNPELSELPEE 142 (255)
T ss_pred HHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhc--CCCchHHHhHHH
Confidence 44455666666543210 0000123445667777777777664 556667777888888877642 112334444445
Q ss_pred HHHHHHHhhccccch-hhhHHH-HHH-HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhcCChh-HHHHHHHHHHH
Q 006201 505 IVQALLTVTHREDAG-ESRLRT-AAY-ETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSD-EREKQNEIQGL 580 (657)
Q Consensus 505 i~~~L~~~l~~~~~~-~~~~~~-~~~-~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~ 580 (657)
-+..++..+...... ...+|. +.+ -++..++.+.+..-.+.+...|..+++..+... ...+ +... .-+-.
T Consensus 143 WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~----~~~~~~~~d--~~qVH 216 (255)
T PF10350_consen 143 WLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPS----TQHEDEKSD--LPQVH 216 (255)
T ss_pred HHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCc----ccccccccc--hHHHH
Confidence 566666666554110 012332 222 344555555554333566666666655544322 1111 0000 11334
Q ss_pred HHHHHHHHHHH--hCCCcchhhHhhHHHHHHHHHHHHHHcc
Q 006201 581 LCGCLQVIIQK--LGSSEQTKYVFMQYADQMMGLFLRVFAI 619 (657)
Q Consensus 581 ~~~~l~~l~~~--~~~~~~~~~~~~~~~~~i~~~l~~~l~~ 619 (657)
++.++..+++- ++.. ..+|+.+.+...++.+..
T Consensus 217 AlNiLr~if~ds~L~~~------~~~yi~~~l~lai~~f~s 251 (255)
T PF10350_consen 217 ALNILRAIFRDSKLSED------VSPYIEDALILAIKGFSS 251 (255)
T ss_pred HHHHHHHHHhcchhHHH------HHHHHHHHHHHHHHhCCC
Confidence 78888888873 5555 888999888887777654
No 357
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=49.27 E-value=1.4e+02 Score=25.81 Aligned_cols=88 Identities=20% Similarity=0.300 Sum_probs=59.4
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHhhh-----cCCCCCchHHHHHHHhhcCCC-----------h------hHHHHHHHH
Q 006201 97 ILKTLSSPAHDARSTASQVVAKVAGIE-----LPHKQWPELIGALLSNIHQLP-----------P------HTKQATLET 154 (657)
Q Consensus 97 ll~~l~~~~~~vr~~aa~~l~~i~~~~-----~~~~~~~~l~~~l~~~l~~~~-----------~------~~~~~~l~~ 154 (657)
++..|.++.-.=|+.+..-+..+.... .+...|..++..|+.++..+. . .....+..+
T Consensus 9 ~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~a~~ 88 (155)
T PF11640_consen 9 ILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRLSSCASA 88 (155)
T ss_pred HHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHH
Confidence 566777777777888888888888643 233589999999999874321 1 122345556
Q ss_pred HHHHhhhccccccchhhHhHHHHHHHhccCC
Q 006201 155 LGYICEEVSSDAVEQDHVNKILTAVVQGMNA 185 (657)
Q Consensus 155 l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~ 185 (657)
+..+++.. ...+....+..++..+.+.+..
T Consensus 89 lR~~ve~~-~~~~k~kt~~~Ll~hI~~~l~~ 118 (155)
T PF11640_consen 89 LRLFVEKS-NSRLKRKTVKALLDHITDLLPD 118 (155)
T ss_pred HHHHHHHH-HhhcccchHHHHHHHHHHHhhC
Confidence 66666655 3445456678888888888884
No 358
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=47.82 E-value=5.9e+02 Score=30.93 Aligned_cols=225 Identities=13% Similarity=0.102 Sum_probs=108.9
Q ss_pred CChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCc
Q 006201 51 KPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWP 130 (657)
Q Consensus 51 ~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~ 130 (657)
+...+|.+|+..|.|+-.....+ ...-...+..+ ..++..|.+..+.+....|.+|..+.=.- . ....
T Consensus 363 ~~~aLRrYa~MALTNLTFGDv~N---------Ka~LCs~rgfM-eavVAQL~s~peeL~QV~AsvLRNLSWRA-D-~nmK 430 (2195)
T KOG2122|consen 363 ECNALRRYAGMALTNLTFGDVAN---------KATLCSQRGFM-EAVVAQLISAPEELLQVYASVLRNLSWRA-D-SNMK 430 (2195)
T ss_pred HHHHHHHHHHHHhhccccccccc---------hhhhhhhhhHH-HHHHHHHhcChHHHHHHHHHHHHhccccc-c-ccHH
Confidence 45689999999999965432110 01112233333 45566666666666666555554433110 0 0111
Q ss_pred hHHHH------HHH-hhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCC--CHHHHHHHHHHHH
Q 006201 131 ELIGA------LLS-NIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASES--NNDVRLAATRALY 201 (657)
Q Consensus 131 ~l~~~------l~~-~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~--~~~vr~~al~~l~ 201 (657)
+.+.. |.. .+....+....+.|.+|..+.-.+....-+.=.++..+..|+..|.-..+ .-.+-..+-.+|.
T Consensus 431 kvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILR 510 (2195)
T KOG2122|consen 431 KVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILR 510 (2195)
T ss_pred HHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHH
Confidence 22211 222 13344455566667777666555422111001233444455555543111 1223333434444
Q ss_pred HHHhhchhhcCC-hhh-HHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHH--HHHHHHHHHHhcCChHHH
Q 006201 202 NALGFAQANFSN-DME-RDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ--DIFNITAKAVREDEEPVA 277 (657)
Q Consensus 202 ~~~~~~~~~~~~-~~~-~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~v~ 277 (657)
++-.++-..-.. ... +...++.|++.++..+..+..++|-+|..|....++.- .++- ..++.+.+.+.+.+..+.
T Consensus 511 NVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQ-q~LwD~gAv~mLrnLIhSKhkMIa 589 (2195)
T KOG2122|consen 511 NVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQ-QMLWDDGAVPMLRNLIHSKHKMIA 589 (2195)
T ss_pred HHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHH-HHHHhcccHHHHHHHHhhhhhhhh
Confidence 433332111000 011 23567888888888888888888888888877766432 2222 234444455555555555
Q ss_pred HHHHHHHHHHh
Q 006201 278 LQAIEFWSSVC 288 (657)
Q Consensus 278 ~~a~~~~~~l~ 288 (657)
..+...+..+.
T Consensus 590 ~GSaaALrNLl 600 (2195)
T KOG2122|consen 590 MGSAAALRNLL 600 (2195)
T ss_pred hhHHHHHHHHh
Confidence 44444444433
No 359
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=47.45 E-value=3.2e+02 Score=27.72 Aligned_cols=97 Identities=14% Similarity=0.133 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHH--HhhchhhcCChhhHHHHHHHHHhh
Q 006201 150 ATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNA--LGFAQANFSNDMERDYIMRVVCEA 227 (657)
Q Consensus 150 ~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~--~~~~~~~~~~~~~~~~il~~l~~~ 227 (657)
.-+.-+..|.+...|..+ +.....++..+..+++ ++.-.|...|+....+= ...+.++ ...++++++..
T Consensus 318 mFL~ElEEILe~iep~eF-qk~~~PLf~qia~c~s--S~HFQVAEraL~~wnNe~i~~Li~~n------~~~ilPiiFpa 388 (457)
T KOG2085|consen 318 MFLNELEEILEVIEPSEF-QKIMVPLFRQIARCVS--SPHFQVAERALYLWNNEYIRSLISQN------AEVILPIVFPA 388 (457)
T ss_pred eeHhhHHHHHHhcCHHHH-HHHhHHHHHHHHHHcC--ChhHHHHHHHHHHHhhHHHHHHHHhc------cceeeehhhHH
Confidence 345566666666655555 4555666666777777 56777777777655441 1112111 13455555544
Q ss_pred ccC---C--cHHHHHHHHHHHHHHHHHHHHhhH
Q 006201 228 TLS---P--EVKIRQAAFECLVAISSTYYEKLA 255 (657)
Q Consensus 228 ~~~---~--~~~~~~~~~~~l~~l~~~~~~~~~ 255 (657)
+.. . +..+..-++..+..+.+..++.|.
T Consensus 389 Lyr~sk~hWN~~i~~l~~nvlk~f~emd~~LFe 421 (457)
T KOG2085|consen 389 LYRNSKSHWNQAIHNLILNVLKTFMEMDPKLFE 421 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 421 1 223444455556666665555443
No 360
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=46.21 E-value=2.2e+02 Score=26.97 Aligned_cols=114 Identities=10% Similarity=0.029 Sum_probs=58.0
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHH--
Q 006201 174 KILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYY-- 251 (657)
Q Consensus 174 ~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~-- 251 (657)
-++|.+....++ .+-+.+|..++..++.++..-......-....++++..++.++.+++-.+..+.-.+.++.....
T Consensus 95 yLyPfL~tt~k~-r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL 173 (262)
T PF04078_consen 95 YLYPFLNTTSKT-RPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGL 173 (262)
T ss_dssp GGHHHHH----S-HHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHH
T ss_pred hehhhhhccccc-cccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHH
Confidence 346666444332 33467899999999998763111000000002466666667766666666667777777665431
Q ss_pred -------HhhHHhHHHHHHHHH-HHHhcCChHHHHHHHHHHHHHhH
Q 006201 252 -------EKLAPYIQDIFNITA-KAVREDEEPVALQAIEFWSSVCD 289 (657)
Q Consensus 252 -------~~~~~~~~~l~~~~~-~~~~~~~~~v~~~a~~~~~~l~~ 289 (657)
+.|. .+..++..++ ...++.++..-+..++....+++
T Consensus 174 ~yiC~t~eRf~-av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsd 218 (262)
T PF04078_consen 174 NYICQTAERFF-AVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSD 218 (262)
T ss_dssp HHHTSSHHHHH-HHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTT
T ss_pred HHHhcCHHHHH-HHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc
Confidence 2221 1223333332 23445666666777777777765
No 361
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=45.84 E-value=45 Score=21.79 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhh
Q 006201 89 VKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIE 123 (657)
Q Consensus 89 ~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~ 123 (657)
..+++|+.+++.|...+.. |.++..+++++....
T Consensus 3 n~eYLKNVll~fl~~~e~~-r~~ll~vi~tlL~fs 36 (46)
T smart00755 3 NFEYLKNVLLQFLTLRESE-RETLLKVISTVLQLS 36 (46)
T ss_pred cHHHHHHHHHHHhccCcch-HHHHHHHHHHHhCCC
Confidence 3578899999999887755 888888888887764
No 362
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=45.80 E-value=6.4e+02 Score=30.71 Aligned_cols=31 Identities=13% Similarity=0.246 Sum_probs=22.5
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhh
Q 006201 410 ALNFMLTALMQDPNNHVKDTTAWTLGRMFEFL 441 (657)
Q Consensus 410 i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~ 441 (657)
.++.+...+ .+.|..+-..+..+|.++..+-
T Consensus 573 Av~mLrnLI-hSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 573 AVPMLRNLI-HSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred cHHHHHHHH-hhhhhhhhhhHHHHHHHHhcCC
Confidence 466777777 8888888777777777776653
No 363
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=44.80 E-value=1.7e+02 Score=30.73 Aligned_cols=73 Identities=11% Similarity=0.013 Sum_probs=52.5
Q ss_pred chHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccc-cccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHh
Q 006201 130 PELIGALLSNIHQLPPHTKQATLETLGYICEEVSS-DAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALG 205 (657)
Q Consensus 130 ~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~-~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 205 (657)
..++..+...+.+.+...+.....++.++.-.... +.+ +.-...=+..++...+ |+...|+...++.|.++..
T Consensus 472 ~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf-~~Lakig~~kvl~~~N--Dpc~~vq~q~lQilrNftc 545 (743)
T COG5369 472 KSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKF-KFLAKIGVEKVLSYTN--DPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred hhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhh-hhHHhcCHHHHHHHhc--CcccccHHHHHHHHHhccc
Confidence 67888889988888888888889999888765521 122 1111222445666667 8999999999999999765
No 364
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=43.23 E-value=4.6e+02 Score=28.35 Aligned_cols=285 Identities=12% Similarity=0.116 Sum_probs=137.5
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCh------------HHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHH--
Q 006201 83 LSLDSSVKAQIKSFILKTLSSPAH------------DARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTK-- 148 (657)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~~~~------------~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~-- 148 (657)
..++++.-..+-+..+..+...++ .+-...|++||.+++..+. ..-..++..|-+...+.+ ...
T Consensus 26 ~~l~~~l~~~le~i~F~~lk~~d~~~~~~~~s~~~~~~~~l~AellG~lS~~rF~-sVsdRF~~eL~~~~~~~~-~~~~~ 103 (552)
T PF14222_consen 26 HSLTEELGDKLEEIVFDQLKTADPVSEQPSTSPLRLANWDLFAELLGVLSEIRFV-SVSDRFIAELEKLRKDSN-DAESK 103 (552)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCccccccccchhHHHHHHHHHHHHHHHHhhhCh-HHHHHHHHHHHHhcccCC-chHHH
Confidence 346777777777777776654322 3345678888888887665 344556666666654222 222
Q ss_pred -HHHHHHHHHHhhh-ccccccchhhHhHHHHHHHhccCCCC-CCHHHHHHHHHHHHHHHhhchhhcCCh---hhHHHHHH
Q 006201 149 -QATLETLGYICEE-VSSDAVEQDHVNKILTAVVQGMNASE-SNNDVRLAATRALYNALGFAQANFSND---MERDYIMR 222 (657)
Q Consensus 149 -~~~l~~l~~i~~~-~~~~~l~~~~~~~l~~~l~~~l~~~~-~~~~vr~~al~~l~~~~~~~~~~~~~~---~~~~~il~ 222 (657)
...+..+..+--. ++.+.+ +..-+.+..+.+.... . ...++|.+-++.|..++.-+-.....+ ..|...+.
T Consensus 104 ~~~li~GMr~lrlk~~p~e~~--e~s~~Fm~~l~~~f~~-~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~ 180 (552)
T PF14222_consen 104 IELLIMGMRYLRLKMYPEEAF--EESAEFMQSLAKFFLE-AHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVE 180 (552)
T ss_pred HHHHHhhcceeeecCCCHHHH--HHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHH
Confidence 2222333222111 111222 2223334444444442 2 356799999999988765332221111 12333444
Q ss_pred HHH----hhccCCcHHHHHHHHHHHHHHHHHHH-HhhHHhHH-HHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhh
Q 006201 223 VVC----EATLSPEVKIRQAAFECLVAISSTYY-EKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILE 296 (657)
Q Consensus 223 ~l~----~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~ 296 (657)
.+. ..... ++....++-.+..+.-..+ ++|..+-. .+++.....+++. ..|..+++.+..+.-.-. . .
T Consensus 181 ~i~~~~~~~~~K--~khw~~afPL~t~lLCvS~~e~F~~~W~~~~i~~~~~klKdk--~~r~~~l~~l~RLlWvYL-~-~ 254 (552)
T PF14222_consen 181 TIYPRAAKMMSK--PKHWNVAFPLVTTLLCVSPKEFFLSNWLPSLIESLISKLKDK--ETRPVALECLSRLLWVYL-V-Y 254 (552)
T ss_pred HHHHHHHHHHhC--cchhhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhcCCh--hhhHHHHHHHHHHHHHHH-h-c
Confidence 332 22221 3334445555555544433 45555555 5777766666654 566777766555543321 0 0
Q ss_pred hcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhh-hHHHHHHHHHhhcC----CCch-hchHH
Q 006201 297 EYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAM-AGGTCLGLVARTVG----DDIV-PLVMP 370 (657)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~-~a~~~L~~l~~~~~----~~~~-~~l~~ 370 (657)
.. + | ..+-...-|+.++..++..-+ ..|-++. .-.+.+..+....| +-.+ ..+++
T Consensus 255 r~-~--E------s~n~T~krL~~i~~~lfp~~k----------k~~i~~D~~~~~~lv~ii~~I~~~~~df~~~~iI~~ 315 (552)
T PF14222_consen 255 RC-P--E------SLNNTTKRLDSIFKLLFPKGK----------KGWIPRDPEPLNPLVQIIRFIGYKHLDFAFRNIIFP 315 (552)
T ss_pred cc-C--C------CchHHHHHHHHHHHHHccCCC----------CcccCCChhhhhhHHHHHHhHhhhCcchHHHHHHHH
Confidence 00 0 0 011222334555555542111 1233333 33344444444443 3332 34556
Q ss_pred HHHhhhc-----CcchhhHHHHHHHHHHhhcC
Q 006201 371 FVEENIT-----KQEWRQREAATYAFGSILEG 397 (657)
Q Consensus 371 ~l~~~l~-----~~~~~~r~aal~~l~~i~~~ 397 (657)
.+..... .-++...-.++.++-.|...
T Consensus 316 LL~~~~~~s~~~~l~pERm~IgIRA~l~Il~~ 347 (552)
T PF14222_consen 316 LLNVSFNGSSLENLNPERMIIGIRAFLAILSD 347 (552)
T ss_pred HHccccccccccccChhHHHHHHHHHHHHHHh
Confidence 6654332 22466667777777766654
No 365
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=43.02 E-value=1.6e+02 Score=24.90 Aligned_cols=30 Identities=27% Similarity=0.289 Sum_probs=18.2
Q ss_pred CCchHHHHHHHhhcCCChhHHHHHHHHHHH
Q 006201 128 QWPELIGALLSNIHQLPPHTKQATLETLGY 157 (657)
Q Consensus 128 ~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~ 157 (657)
.++++...+...+.++++.++..|+.|+..
T Consensus 14 ~~~~l~~~~~~LL~~~d~~vQklAL~cll~ 43 (141)
T PF07539_consen 14 RSDELYDALLRLLSSRDPEVQKLALDCLLT 43 (141)
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 445555666666666666666666666654
No 366
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.30 E-value=1.8e+02 Score=30.43 Aligned_cols=78 Identities=9% Similarity=0.091 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCc-h-hHHHHHHHHHHhhccccchhhhHHHHHHHHHH
Q 006201 456 CQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLT-P-FFQEIVQALLTVTHREDAGESRLRTAAYETLN 532 (657)
Q Consensus 456 ~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~-~-~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~ 532 (657)
-..++.+|.+.++. ++.++..|...|..++++|+.. +. . -=..++..++.+...... +..+|..++..|.
T Consensus 36 ~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~------fh~~Va~k~fL~emVk~~k~~~~-~~~Vr~kiL~LI~ 108 (470)
T KOG1087|consen 36 PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYS------FHLQVASKEFLNEMVKRPKNKPR-DLKVREKILELID 108 (470)
T ss_pred cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHH------HHHHHHHHHHHHHHHhccccCCc-chhHHHHHHHHHH
Confidence 35788888888886 6899999999999999998752 22 1 124666667777766522 5789999999999
Q ss_pred HHHHhccc
Q 006201 533 EVVRCSTD 540 (657)
Q Consensus 533 ~l~~~~~~ 540 (657)
+.-...+.
T Consensus 109 ~W~~af~~ 116 (470)
T KOG1087|consen 109 TWQQAFCG 116 (470)
T ss_pred HHHHHccC
Confidence 99888876
No 367
>PLN03205 ATR interacting protein; Provisional
Probab=39.18 E-value=2.8e+02 Score=27.88 Aligned_cols=95 Identities=15% Similarity=0.158 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcc--ccccc---hhhHhHHHHHHHhccC
Q 006201 110 STASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVS--SDAVE---QDHVNKILTAVVQGMN 184 (657)
Q Consensus 110 ~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~--~~~l~---~~~~~~l~~~l~~~l~ 184 (657)
.+..++...+.+..+.--....+++.|+..+.-++..+...++++|..+.+..= ...++ ..+...++....|...
T Consensus 302 ekVshlYs~~tKiS~G~V~lqtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv 381 (652)
T PLN03205 302 EKVYHLYSAVTKISYGFVNLKSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIAS 381 (652)
T ss_pred HHHHHHHHHHHHhhCCeeeHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHh
Confidence 345555555555443323567899999999998898888889999988877651 12231 1234455555555443
Q ss_pred CCCCCHHHHHHHHHHHHHHHh
Q 006201 185 ASESNNDVRLAATRALYNALG 205 (657)
Q Consensus 185 ~~~~~~~vr~~al~~l~~~~~ 205 (657)
. .....||..|+.++.-++.
T Consensus 382 ~-~TEE~VrLEAvSIMnVIlm 401 (652)
T PLN03205 382 I-RTEEDVKLEALSIMNIIVM 401 (652)
T ss_pred c-cchhheeeehhhhhHHhhh
Confidence 2 4566788888887766553
No 368
>KOG3613 consensus Dopey and related predicted leucine zipper transcription factors [Transcription]
Probab=37.94 E-value=1.2e+02 Score=36.55 Aligned_cols=82 Identities=10% Similarity=0.046 Sum_probs=58.6
Q ss_pred chhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHH
Q 006201 380 EWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQ-DPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQ 458 (657)
Q Consensus 380 ~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 458 (657)
+...|.-.+.-++-+.-+..-+.+..|++.+...+...+ . ++.+.||.+.+.++..+.-.+. |.....+++.
T Consensus 1500 e~e~ra~~LkRiaf~ifsSp~Dqy~~~lp~iqErl~~~L-rv~~~~~lk~~vFL~~RVLLLR~S------p~hL~~LWPI 1572 (1749)
T KOG3613|consen 1500 ELEQRAMLLKRIAFLIFSSPLDQYLGYLPDIQERLADLL-RVSQSPKLKKAVFLFFRVLLLRIS------PDHLTSLWPI 1572 (1749)
T ss_pred HHHHHHHHHHhhHhheeeCcHHhhhhhchhHHHHHHHhc-ccCCCchHHHHHHHHHHHHHHhcC------HhhcccchHH
Confidence 345555555555554433224666778889999999988 6 8999999999999988888875 4466677777
Q ss_pred HHHHHHHHcc
Q 006201 459 IISVLLQSMK 468 (657)
Q Consensus 459 il~~l~~~l~ 468 (657)
++-.++..+.
T Consensus 1573 mv~ELv~vf~ 1582 (1749)
T KOG3613|consen 1573 MVYELVQVFL 1582 (1749)
T ss_pred HHHHHHHHHH
Confidence 7766666654
No 369
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=37.86 E-value=5.6e+02 Score=27.76 Aligned_cols=73 Identities=15% Similarity=0.137 Sum_probs=47.7
Q ss_pred HHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhH--------HhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHH
Q 006201 219 YIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLA--------PYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDE 290 (657)
Q Consensus 219 ~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--------~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~ 290 (657)
.++.-+++++....+.++..+|+.+..++.+++..|. |++..++.-+-+...+-.+.-....-+..+.+.+.
T Consensus 570 TVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYeAcg~vIse 649 (1053)
T COG5101 570 TVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYEACGMVISE 649 (1053)
T ss_pred HHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHHHHhHHHhc
Confidence 4556667777778889999999999999999875543 34445555444444455555555555555555554
Q ss_pred H
Q 006201 291 E 291 (657)
Q Consensus 291 ~ 291 (657)
.
T Consensus 650 ~ 650 (1053)
T COG5101 650 V 650 (1053)
T ss_pred c
Confidence 3
No 370
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=36.68 E-value=69 Score=28.16 Aligned_cols=43 Identities=26% Similarity=0.291 Sum_probs=27.7
Q ss_pred HHHHHHHHHHcccchHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHH
Q 006201 457 QQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQAL 509 (657)
Q Consensus 457 ~~il~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L 509 (657)
...++.|-.... ++.||..|...|..+.+ +.+..|++++++.|
T Consensus 72 ~~aLeLL~~~f~-d~~VR~yAV~~L~~~sd---------~eL~~yL~QLVQaL 114 (171)
T cd00872 72 EQALELLDCNFP-DEHVREFAVRCLEKLSD---------DELLQYLLQLVQVL 114 (171)
T ss_pred HHHHHHCCCcCC-CHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHH
Confidence 333444433333 48899999999887544 35677777777665
No 371
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=36.57 E-value=4.7e+02 Score=26.58 Aligned_cols=88 Identities=10% Similarity=0.103 Sum_probs=56.5
Q ss_pred HHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHH--HHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc
Q 006201 392 GSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWT--LGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD 469 (657)
Q Consensus 392 ~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~--l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d 469 (657)
..|.+...+..+......+...+-.++ +++|..|...|+.. ...+..-+.+ ....+++.+.|.|.+.-+.
T Consensus 324 EEILe~iep~eFqk~~~PLf~qia~c~-sS~HFQVAEraL~~wnNe~i~~Li~~-------n~~~ilPiiFpaLyr~sk~ 395 (457)
T KOG2085|consen 324 EEILEVIEPSEFQKIMVPLFRQIARCV-SSPHFQVAERALYLWNNEYIRSLISQ-------NAEVILPIVFPALYRNSKS 395 (457)
T ss_pred HHHHHhcCHHHHHHHhHHHHHHHHHHc-CChhHHHHHHHHHHHhhHHHHHHHHh-------ccceeeehhhHHHHHHHHH
Confidence 334444333333333344555566778 89999998777544 4333333332 4567788888888887775
Q ss_pred --chHHHHHHHHHHHHHHhh
Q 006201 470 --VPNVAEKACGALYFLAQG 487 (657)
Q Consensus 470 --~~~v~~~a~~al~~l~~~ 487 (657)
|..+..-++..+..|++.
T Consensus 396 hWN~~i~~l~~nvlk~f~em 415 (457)
T KOG2085|consen 396 HWNQAIHNLILNVLKTFMEM 415 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 578888888999999875
No 372
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=36.41 E-value=5.8e+02 Score=27.50 Aligned_cols=98 Identities=13% Similarity=0.253 Sum_probs=58.0
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHh----------hcCCChhHHHHHHHHHHHHhhhcc
Q 006201 94 KSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSN----------IHQLPPHTKQATLETLGYICEEVS 163 (657)
Q Consensus 94 ~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~----------l~~~~~~~~~~~l~~l~~i~~~~~ 163 (657)
...++..+.+-++.+|.-+...++. |-.++|..+-. +.+.+..+|.....++..++...
T Consensus 277 dsvfvsRy~Dv~d~IRv~c~~~L~d----------wi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~- 345 (740)
T COG5537 277 DSVFVSRYIDVDDVIRVLCSMSLRD----------WIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRI- 345 (740)
T ss_pred HHHHhhhccchhHHHHHHHHHHHHH----------HHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcC-
Confidence 3344445556667777666665543 32333332222 34556788999999998888765
Q ss_pred cc--ccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHh
Q 006201 164 SD--AVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALG 205 (657)
Q Consensus 164 ~~--~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 205 (657)
|. .+ +..++..-..++..+.. |.+- ||..+++.+..+..
T Consensus 346 p~~d~i-r~f~eRFk~rILE~~r~-D~d~-VRi~sik~l~~lr~ 386 (740)
T COG5537 346 PHTDAI-RRFVERFKDRILEFLRT-DSDC-VRICSIKSLCYLRI 386 (740)
T ss_pred CcchHH-HHHHHHHHHHHHHHHhh-ccch-hhHHHHHHHHHHHH
Confidence 32 12 23344444455555553 5555 99999998877544
No 373
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.91 E-value=4.5e+02 Score=27.56 Aligned_cols=101 Identities=11% Similarity=0.055 Sum_probs=71.1
Q ss_pred hcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhh--HhHHHH
Q 006201 100 TLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDH--VNKILT 177 (657)
Q Consensus 100 ~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~--~~~l~~ 177 (657)
.|..++..+--.+|..|. .+ + ..-++.+-.|...+++.++.+...||.+|..+++.+ ++.| ..+ -..+++
T Consensus 13 ~l~~pDWa~NleIcD~IN----~~-~-~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNC-G~~f-h~~Va~k~fL~ 84 (470)
T KOG1087|consen 13 SLAEPDWALNLEICDLIN----ST-E-GGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNC-GYSF-HLQVASKEFLN 84 (470)
T ss_pred cccCccHHHHHHHHHHHh----cC-c-cCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhh-hHHH-HHHHHHHHHHH
Confidence 455666655555555442 11 1 244689999999999888899999999999999998 5555 222 245666
Q ss_pred HHHhccCCCCCCHHHHHHHHHHHHHHHhhch
Q 006201 178 AVVQGMNASESNNDVRLAATRALYNALGFAQ 208 (657)
Q Consensus 178 ~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 208 (657)
-++........+..||..++..|..|-..+.
T Consensus 85 emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~ 115 (470)
T KOG1087|consen 85 EMVKRPKNKPRDLKVREKILELIDTWQQAFC 115 (470)
T ss_pred HHHhccccCCcchhHHHHHHHHHHHHHHHcc
Confidence 6777776522678999999999999876544
No 374
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=35.86 E-value=4.5e+02 Score=26.13 Aligned_cols=109 Identities=14% Similarity=0.174 Sum_probs=64.3
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhH-----HHHHHHHHhh-ccC-Cc--------HHHHHHHH
Q 006201 176 LTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMER-----DYIMRVVCEA-TLS-PE--------VKIRQAAF 240 (657)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~-----~~il~~l~~~-~~~-~~--------~~~~~~~~ 240 (657)
+..+...++ .....+...+++.+.+++.|-......+... ...++-+... ... .+ +.+|...+
T Consensus 58 ~k~lyr~L~--~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI 135 (330)
T PF11707_consen 58 LKLLYRSLS--SSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFI 135 (330)
T ss_pred HHHHHHHhC--cCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHH
Confidence 445566777 4557777799999999988643221111000 1122222211 101 11 38999999
Q ss_pred HHHHHHHHHHHHhhH-HhHH--HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006201 241 ECLVAISSTYYEKLA-PYIQ--DIFNITAKAVREDEEPVALQAIEFWSS 286 (657)
Q Consensus 241 ~~l~~l~~~~~~~~~-~~~~--~l~~~~~~~~~~~~~~v~~~a~~~~~~ 286 (657)
..+..+....+..+. ..+. .++..+++.+..+++++....++++..
T Consensus 136 ~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~ 184 (330)
T PF11707_consen 136 RFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKD 184 (330)
T ss_pred HHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHH
Confidence 999998876543333 3332 457777788888778887777766554
No 375
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=34.75 E-value=3.1e+02 Score=23.83 Aligned_cols=120 Identities=19% Similarity=0.238 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCH
Q 006201 111 TASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNN 190 (657)
Q Consensus 111 ~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~ 190 (657)
.....|..+++.-. ..-+++++.+.+.+.+........-..+|..++... |..+ .++...+.. ++..+. .-..
T Consensus 37 LG~~IL~~~fk~h~--~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~-p~~v-le~~~~l~~-~ld~l~--~lp~ 109 (158)
T PF14676_consen 37 LGIQILLELFKVHE--MIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKA-PLTV-LECSSKLKE-LLDYLS--FLPG 109 (158)
T ss_dssp HHHHHHHHHHHH-G--GGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH--HHHH-S-S-HHHHG-GGGGTT--TS-H
T ss_pred HHHHHHHHHHHHhH--HHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHC-hHHH-HHHHHHHHH-HHHHHH--hCCH
Confidence 44445555555431 134566666666654433322223468888888877 4333 233333322 222222 2334
Q ss_pred HHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHH
Q 006201 191 DVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECL 243 (657)
Q Consensus 191 ~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l 243 (657)
++...-++++.-++.. ....++.++-.+-..+-..+.+.|..++..+
T Consensus 110 ~~a~~ll~Al~PLi~~------s~~lrd~lilvLRKamf~r~~~~R~~Av~Gf 156 (158)
T PF14676_consen 110 DVAIGLLRALLPLIKF------SPSLRDSLILVLRKAMFSRELDARQMAVNGF 156 (158)
T ss_dssp HHHHHHHHHHHHHHTT-------HHHHHHHHHHHHHHTT-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc------CHHHHHHHHHHHHHHHccccHHHHHHHHHHh
Confidence 4444444544444332 1233466666666666666777777766544
No 376
>PF14961 BROMI: Broad-minded protein
Probab=34.72 E-value=7.7e+02 Score=29.25 Aligned_cols=73 Identities=11% Similarity=0.159 Sum_probs=49.9
Q ss_pred hHHHHHHHhhcCCCh-hHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhch
Q 006201 131 ELIGALLSNIHQLPP-HTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQ 208 (657)
Q Consensus 131 ~l~~~l~~~l~~~~~-~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 208 (657)
+=++.+.+.+.-.+| .+|..|+..|..+.. .+.+..+....+-..+..+|. |+++.+...+++.........+
T Consensus 161 e~lq~i~d~ld~~~P~evR~eAlq~Lc~~p~---SDVls~E~W~~L~~~L~~~Ls--DpD~~is~~~L~f~Ak~fssSp 234 (1296)
T PF14961_consen 161 EQLQLIADKLDPGQPKEVRLEALQILCSAPP---SDVLSCESWSVLRENLTDALS--DPDPEISDASLRFHAKMFSSSP 234 (1296)
T ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhcCCh---hhccccccHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhccCCc
Confidence 334455555554444 678888887765422 345545667777888888888 8999999999998888665433
No 377
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=34.29 E-value=3.1e+02 Score=23.78 Aligned_cols=117 Identities=15% Similarity=0.189 Sum_probs=50.2
Q ss_pred HHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC---CCCchHHH
Q 006201 58 LAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH---KQWPELIG 134 (657)
Q Consensus 58 ~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~---~~~~~l~~ 134 (657)
++..+|.+.++.+ +..+.+|.+.+++.+....+........+|+.+++.. |. +.|..+ .
T Consensus 37 LG~~IL~~~fk~h----------------~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~-p~~vle~~~~l-~ 98 (158)
T PF14676_consen 37 LGIQILLELFKVH----------------EMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKA-PLTVLECSSKL-K 98 (158)
T ss_dssp HHHHHHHHHHHH-----------------GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH--HHHHS-S-HHH-H
T ss_pred HHHHHHHHHHHHh----------------HHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHC-hHHHHHHHHHH-H
Confidence 7777777776543 2333444444444443322222234567788887765 31 123222 2
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHH
Q 006201 135 ALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRAL 200 (657)
Q Consensus 135 ~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l 200 (657)
.+++.+..-...+..+-+.++.-+++.- ...-+.++-.+-+.+- ..+.+.|..|+..+
T Consensus 99 ~~ld~l~~lp~~~a~~ll~Al~PLi~~s------~~lrd~lilvLRKamf--~r~~~~R~~Av~Gf 156 (158)
T PF14676_consen 99 ELLDYLSFLPGDVAIGLLRALLPLIKFS------PSLRDSLILVLRKAMF--SRELDARQMAVNGF 156 (158)
T ss_dssp GGGGGTTTS-HHHHHHHHHHHHHHHTT-------HHHHHHHHHHHHHHTT---SSHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhcC------HHHHHHHHHHHHHHHc--cccHHHHHHHHHHh
Confidence 2333333333344333333333333221 1222344444445554 35566666665543
No 378
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=33.93 E-value=69 Score=23.46 Aligned_cols=52 Identities=13% Similarity=0.127 Sum_probs=35.8
Q ss_pred hhhHHHHHHHHHhhc-CCCchh--chHHHHHhhh-cCcchhhHHHHHHHHHHhhcC
Q 006201 346 AMAGGTCLGLVARTV-GDDIVP--LVMPFVEENI-TKQEWRQREAATYAFGSILEG 397 (657)
Q Consensus 346 r~~a~~~L~~l~~~~-~~~~~~--~l~~~l~~~l-~~~~~~~r~aal~~l~~i~~~ 397 (657)
.++|..+++.++..- |-.+++ .+++.+.+.. .++.|.+|-.++++|+-++..
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 457888888887643 433333 3455444443 356799999999999999874
No 379
>PF14961 BROMI: Broad-minded protein
Probab=32.71 E-value=1.6e+02 Score=34.27 Aligned_cols=68 Identities=16% Similarity=0.252 Sum_probs=54.6
Q ss_pred HHHHHhcCCCC-hHHHHHHHHHHHHHHhhhcC-CCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhc
Q 006201 95 SFILKTLSSPA-HDARSTASQVVAKVAGIELP-HKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEV 162 (657)
Q Consensus 95 ~~ll~~l~~~~-~~vr~~aa~~l~~i~~~~~~-~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~ 162 (657)
+.+++.+.... .+||..|.+.|..+--.+.. ...|+.+-..|...+.|+|+.+.+.+++.....+...
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssS 233 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSS 233 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCC
Confidence 45556666544 69999999988776655543 2589999999999999999999999999998887765
No 380
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=31.43 E-value=2.3e+02 Score=22.89 Aligned_cols=87 Identities=17% Similarity=0.208 Sum_probs=46.8
Q ss_pred cHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHH
Q 006201 455 NCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEV 534 (657)
Q Consensus 455 ~~~~il~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l 534 (657)
|+..++..|...= +++.-...|......++..-.. .+..+..+..+++..|+.+=++.+. ++-.+.-..++-.+
T Consensus 4 YlrDll~~L~~~~-~~~e~~e~aL~~a~~LIR~k~~---fg~el~~~a~eL~~~Ll~L~~~f~~--~~Fe~~R~~alval 77 (114)
T PF10193_consen 4 YLRDLLEYLRSDD-EDYEKFEAALKSAEKLIRRKPD---FGTELSEYAEELLKALLHLQNKFDI--ENFEELRQNALVAL 77 (114)
T ss_dssp -HHHHHHHHT-------S-SHHHHHHHHHHHHS--------SSHHHHHHHHHHHHHH---TT----TTTTHHHHHHHHHH
T ss_pred hHHHHHHHHhcCc-CCHHHHHHHHHHHHHHHhcCCC---CcchHHHHHHHHHHHHhhccccCCc--cCHHHHHHHHHHHH
Confidence 4454444443211 1355556777778888875321 1347889999999999888776653 23333456677788
Q ss_pred HHhcccccHHHHH
Q 006201 535 VRCSTDETAPMVM 547 (657)
Q Consensus 535 ~~~~~~~~~~~~~ 547 (657)
+-..|....||+.
T Consensus 78 ~v~~P~~~~~~L~ 90 (114)
T PF10193_consen 78 VVAAPEKVAPYLT 90 (114)
T ss_dssp HHHSGGGHHH-HH
T ss_pred HHHhhHHHHHHHH
Confidence 8888876666544
No 381
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=30.16 E-value=1.2e+02 Score=24.50 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Q 006201 407 VNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEF 440 (657)
Q Consensus 407 ~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~ 440 (657)
-.-.++.++..+ .|+++.|+.+|+.+|...+..
T Consensus 6 ~~w~i~lLv~QL-~D~~~~V~~~A~~iL~e~c~~ 38 (115)
T PF14663_consen 6 EDWGIELLVTQL-YDPSPEVVAAALEILEEACED 38 (115)
T ss_pred HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhc
Confidence 345678899999 999999999999888766654
No 382
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=29.98 E-value=96 Score=24.50 Aligned_cols=57 Identities=11% Similarity=0.158 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHH--HHHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhhhc
Q 006201 384 REAATYAFGSILEGPSPEKLVPLVN--IALNFMLTALM-QDPNNHVKDTTAWTLGRMFEFLH 442 (657)
Q Consensus 384 r~aal~~l~~i~~~~~~~~~~~~~~--~i~~~l~~~l~-~d~~~~vr~~a~~~l~~l~~~~~ 442 (657)
|...+..++.++..+ ......+. .-+|.++.... .+.+|.+|+-|.+++..+++...
T Consensus 3 K~~lvrlianl~~~~--~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~ 62 (102)
T PF09759_consen 3 KRDLVRLIANLCYKN--KEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNP 62 (102)
T ss_pred HHHHHHHHHHHHhCC--HHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCH
Confidence 444566677776553 12222222 23566666431 57899999999999999998753
No 383
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=28.87 E-value=4.4e+02 Score=23.88 Aligned_cols=149 Identities=20% Similarity=0.152 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHHHHHhcCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHHH
Q 006201 17 GTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSF 96 (657)
Q Consensus 17 ~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ 96 (657)
|.+|+-|.+...+.... +-...++.-+-. +...+.|.+|+.++...... .+++ ....
T Consensus 33 p~lr~lak~~~~~~~~~---~~~~~l~~~L~~-~~~~E~~~la~~il~~~~~~---------------~~~~----~~~~ 89 (213)
T PF08713_consen 33 PDLRKLAKDIYKELKLS---EELYELADELWE-SGYREERYLALLILDKRRKK---------------LTEE----DLEL 89 (213)
T ss_dssp HHHHHHHHHHHHHHCTS---HHHHHHHHHHHC-SSCHHHHHHHHHHHHHCGGG-----------------HH----HHHH
T ss_pred HHHHHHHHHHHhhcccc---hHHHHHHHHHcC-CchHHHHHHHHHHhHHHhhh---------------hhHH----HHHH
Confidence 45555555555554432 222334443433 34688899999888654321 1211 1223
Q ss_pred HHHhcCCC-ChHHHHHH-HHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhH
Q 006201 97 ILKTLSSP-AHDARSTA-SQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNK 174 (657)
Q Consensus 97 ll~~l~~~-~~~vr~~a-a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~ 174 (657)
+-..+..- +..+.-.+ ..+++.+.... +.+.+.+.+.+.|+++-.|..++.++-.... ......
T Consensus 90 ~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~--------~~~~~~ 155 (213)
T PF08713_consen 90 LEKWLPDIDNWATCDSLCSKLLGPLLKKH------PEALELLEKWAKSDNEWVRRAAIVMLLRYIR--------KEDFDE 155 (213)
T ss_dssp HHHCCCCCCCHHHHHHHTHHHHHHHHHHH------GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGG--------GCHHHH
T ss_pred HHHHhccCCcchhhhHHHHHHHHHHHHhh------HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH--------hcCHHH
Confidence 33344433 44555444 55566654432 6788899999999999999888776533222 234456
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHH
Q 006201 175 ILTAVVQGMNASESNNDVRLAATRALYNAL 204 (657)
Q Consensus 175 l~~~l~~~l~~~~~~~~vr~~al~~l~~~~ 204 (657)
++..+...+. |++.-||.+.-.+|..+.
T Consensus 156 ~l~~~~~~~~--d~~~~vq~ai~w~L~~~~ 183 (213)
T PF08713_consen 156 LLEIIEALLK--DEEYYVQKAIGWALREIG 183 (213)
T ss_dssp HHHHHHHCTT--GS-HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcC--CchHHHHHHHHHHHHHHH
Confidence 6767777777 788899988888777743
No 384
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=28.62 E-value=1.2e+02 Score=31.75 Aligned_cols=114 Identities=12% Similarity=0.113 Sum_probs=60.9
Q ss_pred chHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccc-cccchh-hHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhc
Q 006201 130 PELIGALLSNIHQLPPHTKQATLETLGYICEEVSS-DAVEQD-HVNKILTAVVQGMNASESNNDVRLAATRALYNALGFA 207 (657)
Q Consensus 130 ~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~-~~l~~~-~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~ 207 (657)
..+.+-|++.+++++..+...+. +.+|..+-+ .-++.. --..++..+.+.+. ..+..+|..+...+..++.-.
T Consensus 430 ~~I~elLi~~Ls~Peimi~~~~t---~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~--sKDdaLqans~wvlrHlmync 504 (743)
T COG5369 430 YPIVELLIDALSNPEIMIEFPDT---IDICNKVVPFSNLGAGFLEKSIIDVLVNLVM--SKDDALQANSEWVLRHLMYNC 504 (743)
T ss_pred cchHHHHHHHhcCccceeeccch---hhhhheeeeccchHHHHHHhhHHHHHHHHhh--cchhhhhhcchhhhhhhhhcC
Confidence 34556666666665443322222 233332200 111111 12445666666665 345577777777777766433
Q ss_pred hhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHH
Q 006201 208 QANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISS 248 (657)
Q Consensus 208 ~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~ 248 (657)
++...-......-++.+..+.+++++.+...+++.|..+--
T Consensus 505 q~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 505 QKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred cchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 22111000112235566778899999999999999988653
No 385
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.32 E-value=1.2e+03 Score=28.65 Aligned_cols=102 Identities=13% Similarity=0.106 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHh
Q 006201 523 LRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVF 602 (657)
Q Consensus 523 ~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 602 (657)
+-..+..+++.+....++++.|+..++|... . ++ .+ ..|=.++..+..+...+|.. .
T Consensus 1520 v~~~li~~i~~~~~a~~~d~~pl~~k~l~~t----r--------ss-~~----~~r~~ai~~~~~l~~~lge~------~ 1576 (1621)
T KOG1837|consen 1520 VSKLLIAEIASDSVADKDDLKPLNQKILKKT----R--------SS-SR----KARYLAIIQVKLLYTKLGEN------V 1576 (1621)
T ss_pred HHHHHHHHHHhhccCChhhhHHHHHHHHHHh----c--------cc-cH----HHHHHHHHHHHHHHHHhcch------h
Confidence 4446677777777777777777666443321 1 11 11 23445788889999999999 8
Q ss_pred hHHHHHHHHHHHHHHcccCCcchhhHHHHHHHHHHHhchhhhhcc
Q 006201 603 MQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGLCHHRRC 647 (657)
Q Consensus 603 ~~~~~~i~~~l~~~l~~~~~~v~~~~~~~l~~l~~~~g~~f~~y~ 647 (657)
.+.++++++.+-..+++.+.+|...+-..+..+=+.+|+.|..|+
T Consensus 1577 ~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE~l~~y~ 1621 (1621)
T KOG1837|consen 1577 IVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGEPLQSYL 1621 (1621)
T ss_pred HHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhhhhcC
Confidence 999999999999999998888877777788888889999888875
No 386
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=27.91 E-value=3.6e+02 Score=24.08 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=53.1
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHH
Q 006201 177 TAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAP 256 (657)
Q Consensus 177 ~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 256 (657)
+.+..-+. +.+.-+|..++-++...+. . ....+.++..+.....+++.-++.++..+|..+...+++.+..
T Consensus 108 ~~~~~w~~--s~~~~~rR~~~~~~~~~~~---~----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~ 178 (197)
T cd06561 108 DLLEEWAK--SENEWVRRAAIVLLLRLIK---K----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIA 178 (197)
T ss_pred HHHHHHHh--CCcHHHHHHHHHHHHHHHH---h----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 34445555 6777788888777666432 1 1223678888888888888899999999999999888776666
Q ss_pred hHHH
Q 006201 257 YIQD 260 (657)
Q Consensus 257 ~~~~ 260 (657)
++..
T Consensus 179 ~l~~ 182 (197)
T cd06561 179 FLEK 182 (197)
T ss_pred HHHH
Confidence 5543
No 387
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=26.45 E-value=2.3e+02 Score=22.73 Aligned_cols=72 Identities=17% Similarity=0.202 Sum_probs=46.1
Q ss_pred hchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHH-HHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 006201 366 PLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNI-ALNFMLTALMQDPNNHVKDTTAWTLGRMFE 439 (657)
Q Consensus 366 ~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~-i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~ 439 (657)
+.++..+.+.+.......|-.+++.+.+|+..+. .....++.. +.+.+.... ...++.+|.....++...-+
T Consensus 36 ~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~-~~~~~~~~~~~~~~f~~~~-~~~~~~~r~kl~rl~~iW~~ 108 (114)
T cd03562 36 KEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVG-RKYKEFFSEFLVPLFLDAY-EKVDEKTRKKLERLLNIWEE 108 (114)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHccC
Confidence 3445555555555556788899999999998874 333333333 345555556 66778888877777665444
No 388
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=25.30 E-value=86 Score=27.92 Aligned_cols=30 Identities=20% Similarity=0.432 Sum_probs=18.4
Q ss_pred chHHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 006201 130 PELIGALLSNIHQLPPHTKQATLETLGYIC 159 (657)
Q Consensus 130 ~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~ 159 (657)
|+.+..|..++.+++..+|..++.+|..+|
T Consensus 157 ~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 157 PDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 455666666666666667777776666654
No 389
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=24.76 E-value=2.8e+02 Score=22.26 Aligned_cols=69 Identities=17% Similarity=0.277 Sum_probs=44.4
Q ss_pred chHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhH-hHHHHHHHhccCCCCCCHHHHHHHHHHHHH
Q 006201 130 PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHV-NKILTAVVQGMNASESNNDVRLAATRALYN 202 (657)
Q Consensus 130 ~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~-~~l~~~l~~~l~~~~~~~~vr~~al~~l~~ 202 (657)
+.++..+.+.+....+..+-.++.++..|++... ... .... ..+.+.+..... ..++.+|....+.+.-
T Consensus 36 ~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~-~~~-~~~~~~~~~~~f~~~~~--~~~~~~r~kl~rl~~i 105 (114)
T cd03562 36 KEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVG-RKY-KEFFSEFLVPLFLDAYE--KVDEKTRKKLERLLNI 105 (114)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcc-cch-HHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHH
Confidence 4566666666666677788899999999999873 322 1222 233555555555 5678888766665554
No 390
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=24.08 E-value=1.9e+02 Score=24.86 Aligned_cols=77 Identities=19% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHcccchHHHHHHHHHHHHHHhh
Q 006201 408 NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQG 487 (657)
Q Consensus 408 ~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~l~~~ 487 (657)
+..+|.++..+ .-.++.-+..+...+......-+ ...++.|.....+ +.||..|+..|..+...
T Consensus 38 p~~lp~~L~sv-~w~~~~~~~e~~~lL~~W~~~~~--------------~~aL~LL~~~~~~-~~vr~yAv~~L~~~~~~ 101 (152)
T cd00864 38 PKALPKLLKSV-NWNDDEEVSELYQLLKWWAPLSP--------------EDALELLSPKYPD-PVVRQYAVRVLESASDD 101 (152)
T ss_pred hHHHHHHHHHc-cCCCHHHHHHHHHHHhcCCCCCH--------------HHHHHHcCCcCCC-HHHHHHHHHHHHhCCHH
Q ss_pred ccCCCCCCCCCchhHHHHHHHH
Q 006201 488 FEDAISPSSPLTPFFQEIVQAL 509 (657)
Q Consensus 488 ~~~~~~~~~~l~~~~~~i~~~L 509 (657)
.+.-|++++++.|
T Consensus 102 ---------~l~~ylpQLVQaL 114 (152)
T cd00864 102 ---------ELLLYLPQLVQAL 114 (152)
T ss_pred ---------HHHHHHHHHHHHH
No 391
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=24.00 E-value=2.2e+02 Score=24.91 Aligned_cols=51 Identities=16% Similarity=0.211 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhhcCCCCC-----chHHHHHHHhhcCCChhHHHHHHHHHHHHhhhc
Q 006201 111 TASQVVAKVAGIELPHKQW-----PELIGALLSNIHQLPPHTKQATLETLGYICEEV 162 (657)
Q Consensus 111 ~aa~~l~~i~~~~~~~~~~-----~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~ 162 (657)
.++.+|..+....-+ +.| ..++|.+...+++..+.....|+..+..+++.+
T Consensus 45 vlvD~L~vl~~~~~~-~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f 100 (164)
T PF13925_consen 45 VLVDVLSVLNQSLKP-EKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKF 100 (164)
T ss_pred HHHHHHHHHHHhcCc-CcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHH
Confidence 346666666633323 356 689999999999999999999999999999888
No 392
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=22.37 E-value=6.8e+02 Score=23.81 Aligned_cols=100 Identities=19% Similarity=0.213 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhc-cCCcHHHHHHHHHHHHHHHHHHHHhhHHhHH-HHH
Q 006201 185 ASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEAT-LSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIF 262 (657)
Q Consensus 185 ~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~ 262 (657)
+..........|++.+..++ .+......-..+...++.++.++ ....+.+..+++.+|..+.-..|.....+-. .=+
T Consensus 100 ~~~~~~~li~~aL~vLQGl~-LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl 178 (257)
T PF08045_consen 100 DSPSNDSLIALALRVLQGLC-LLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGL 178 (257)
T ss_pred cccchhHHHHHHHHHHHHHH-HcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCH
Q ss_pred HHHHHHHhc--CChHHHHHHHHHHH
Q 006201 263 NITAKAVRE--DEEPVALQAIEFWS 285 (657)
Q Consensus 263 ~~~~~~~~~--~~~~v~~~a~~~~~ 285 (657)
..+...+++ .+.++|..++||+.
T Consensus 179 ~~v~~llk~~~~~~~~r~K~~EFL~ 203 (257)
T PF08045_consen 179 STVCSLLKSKSTDRELRLKCIEFLY 203 (257)
T ss_pred HHHHHHHccccccHHHhHHHHHHHH
No 393
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=22.32 E-value=7.3e+02 Score=24.14 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=39.6
Q ss_pred hhcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcC
Q 006201 80 QRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELP 125 (657)
Q Consensus 80 ~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~ 125 (657)
..|...+.+.+......+++.|.+.+...|..++.+|-.++...+.
T Consensus 48 ~~W~~~~~~~~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~ 93 (293)
T PF07923_consen 48 PSWDELSFDQRKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWG 93 (293)
T ss_pred ccccccchhhHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCcc
Confidence 5788999999998888999999999999999999999888875543
No 394
>cd07354 HN_L-delphilin-R1_like First harmonin_N_like domain (repeat 1) of L-delphilin, and related domains. This subgroup contains the first of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin, isoform 1), and related domains. Delphilin is a scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. The N-terminus of L-delphilin contains this harmonin_N_like domain preceded by a postsynaptic density-95/discs-large/ZO-1 (PDZ) protein-binding domain, PDZ1. L-delphilin, in common with the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta) has a second harmonin_N_like domain (not belonging to this subgroup) and a second PDZ domain, PDZ2. This first harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=22.30 E-value=3e+02 Score=20.51 Aligned_cols=47 Identities=23% Similarity=0.287 Sum_probs=37.9
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhc-CcccHHHHHHHHHhc
Q 006201 2 SAEVTQILLNAQSVDGTVRKQAEESLKQYQEQ-NLPGFLLSLAGELVN 48 (657)
Q Consensus 2 ~~~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~-~~~~~~~~L~~~l~~ 48 (657)
+++|..=++.++..||....+--+.|+.+... +.+.+...|..+|..
T Consensus 5 A~eF~~Kvd~iL~~dp~~Ke~l~~aLk~Ya~~k~vd~l~~aL~~~L~~ 52 (80)
T cd07354 5 AQEFSRKVDAILGDDPVKKEQVFAALKQYAADKNVDCLVWALCGLLQT 52 (80)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhCc
Confidence 35677777888889999999999999988654 678888888888875
No 395
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=22.29 E-value=7.5e+02 Score=24.23 Aligned_cols=9 Identities=33% Similarity=0.534 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 006201 457 QQIISVLLQ 465 (657)
Q Consensus 457 ~~il~~l~~ 465 (657)
..+++.+++
T Consensus 94 ~~vlqkll~ 102 (322)
T cd07920 94 CRVIQKLLE 102 (322)
T ss_pred HHHHHHHHH
Confidence 333333333
No 396
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=22.24 E-value=7.5e+02 Score=24.23 Aligned_cols=7 Identities=0% Similarity=-0.268 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 006201 479 GALYFLA 485 (657)
Q Consensus 479 ~al~~l~ 485 (657)
..+..++
T Consensus 167 ~vvq~~l 173 (322)
T cd07920 167 RVIQRCL 173 (322)
T ss_pred HHHHHHH
Confidence 3333333
No 397
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=22.04 E-value=1e+03 Score=25.75 Aligned_cols=278 Identities=14% Similarity=0.097 Sum_probs=123.1
Q ss_pred HhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcH
Q 006201 345 IAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNN 424 (657)
Q Consensus 345 ~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~ 424 (657)
....-...|.++....+....|.+=.++.+++-+++.--..-+....+-++..- ...+-.+.-..+-.+++.+ ..+..
T Consensus 244 lY~~vl~~Lctfi~~~~~s~f~eLE~~LL~~vL~~~~l~~lLa~DvWCFlaRyg-taeLc~~hv~~L~~Lik~l-p~~~~ 321 (559)
T PF14868_consen 244 LYQHVLVHLCTFIASLSPSAFPELERFLLENVLHPHFLCSLLAMDVWCFLARYG-TAELCAHHVNLLAHLIKSL-PSSSY 321 (559)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHHc-CCcch
Confidence 334445556666555555566666666666666777555555555555555432 2333222233334556666 32221
Q ss_pred HHHHHHHHHHHHHHhhhccCcCCCccCCcccH-----------HHHHHHH-HHHcccchHHHHHHH----HHHHHHHhhc
Q 006201 425 HVKDTTAWTLGRMFEFLHGSTLETPIINQGNC-----------QQIISVL-LQSMKDVPNVAEKAC----GALYFLAQGF 488 (657)
Q Consensus 425 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~-----------~~il~~l-~~~l~d~~~v~~~a~----~al~~l~~~~ 488 (657)
....-...++++...+.++ ....++ ..++..+ ++.+. +.+|..+. .....+++..
T Consensus 322 -~~~~L~~LL~Rl~~~m~~~------~q~~~v~~f~p~~~~~n~~lw~~~~~~~L~--~~lr~~~~~~i~~~~~~~~~~~ 392 (559)
T PF14868_consen 322 -QLINLSILLRRLFFLMAPD------HQSEFVQDFSPSAETENLLLWEGFPLNALS--DELRKQIVQEIFTLCFAFCQKW 392 (559)
T ss_pred -hHhhHHHHHHHHHHhcCHH------HHHHHHHhcCccccccchHHHHhccHHhCC--HHHHHHHHHHHHHHHHHHHHHh
Confidence 2223445567766655411 111111 1112211 22333 23333332 2222333332
Q ss_pred cCCCCCCCCCchhHHHHHHHHHHhhcccc-chhhhHHHHHHHHHHHHHHhc---ccccHHHHHHHHHHHHHHHHHHHhhh
Q 006201 489 EDAISPSSPLTPFFQEIVQALLTVTHRED-AGESRLRTAAYETLNEVVRCS---TDETAPMVMQLVPLIMMELHQTLEAQ 564 (657)
Q Consensus 489 ~~~~~~~~~l~~~~~~i~~~L~~~l~~~~-~~~~~~~~~~~~al~~l~~~~---~~~~~~~~~~l~~~l~~~l~~~~~~~ 564 (657)
.+........-+.....+..+++..+... ..+..-+..+++.++.+.... +....||+..++..++..+...+..
T Consensus 393 ~~~~~~s~g~l~~~~~~LsalL~~c~~~~~~~d~~~~~~i~~ii~~lw~~~~~~~v~~~~~l~~~~~~lL~l~~~~~~~- 471 (559)
T PF14868_consen 393 LSPSSCSLGELGQLNFALSALLQVCNSSGSTIDMKDQTFIVEIISQLWSFLSSKQVSSQPYLQQTLSLLLSLLSFFIQL- 471 (559)
T ss_pred cccCCcCcchHhHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHHHHHHh-
Confidence 22000011111223333434444433322 112333446777777776664 2234577777777666655544321
Q ss_pred cCChhHHHHH-------------HHHHHHHHHHHHHHHHHhCCCcchhhHhh-HHHHHHHHHHHHHHcccCCcchhhHHH
Q 006201 565 KLSSDEREKQ-------------NEIQGLLCGCLQVIIQKLGSSEQTKYVFM-QYADQMMGLFLRVFAIRSATAHEEAML 630 (657)
Q Consensus 565 ~~~~~~~~~~-------------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-~~~~~i~~~l~~~l~~~~~~v~~~~~~ 630 (657)
..++..... ..+|-.+++.++.++.-....+ .. +-.+.+....-..|++++--+..-|++
T Consensus 472 -l~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~-----~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALe 545 (559)
T PF14868_consen 472 -LDPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPES-----DQNPVSPALSELFHMLLADRHWLLHQHALE 545 (559)
T ss_pred -cChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCcc-----ccchhhhHHHHHHHHHhcCCcHHHHHHHHH
Confidence 011111000 0123334444444444333222 21 122223222233456667778888999
Q ss_pred HHHHHHHHhc
Q 006201 631 AIGALAYATG 640 (657)
Q Consensus 631 ~l~~l~~~~g 640 (657)
++|.+|....
T Consensus 546 AF~~FAe~T~ 555 (559)
T PF14868_consen 546 AFGQFAERTS 555 (559)
T ss_pred HHHHHhccCC
Confidence 9999987654
No 398
>PHA01351 putative minor structural protein
Probab=21.89 E-value=1.1e+03 Score=25.97 Aligned_cols=26 Identities=4% Similarity=0.097 Sum_probs=10.8
Q ss_pred HHHHHhcccccHHHHHHHHHHHHHHH
Q 006201 532 NEVVRCSTDETAPMVMQLVPLIMMEL 557 (657)
Q Consensus 532 ~~l~~~~~~~~~~~~~~l~~~l~~~l 557 (657)
..+++..++++..+...+++.++..+
T Consensus 125 ~~~~~~i~n~~~q~~~~~isd~~~~~ 150 (1070)
T PHA01351 125 YSFFQNVANDFAQIISGVISDFLNFF 150 (1070)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 399
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=21.69 E-value=4.3e+02 Score=22.26 Aligned_cols=63 Identities=10% Similarity=0.120 Sum_probs=39.0
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHH-----HHHHHhccCCCCCCHHHHHHHHHHHHH
Q 006201 131 ELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKI-----LTAVVQGMNASESNNDVRLAATRALYN 202 (657)
Q Consensus 131 ~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l-----~~~l~~~l~~~~~~~~vr~~al~~l~~ 202 (657)
+.++....++..+|....+.++..+..+|-+- .+..-| +|.++..++ ++...+...++-++.-
T Consensus 58 ~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~-------~n~~~I~ea~g~plii~~ls--sp~e~tv~sa~~~l~~ 125 (173)
T KOG4646|consen 58 DVLDLFVDSLEEQNELLVEFGIGGLCNLCLDK-------TNAKFIREALGLPLIIFVLS--SPPEITVHSAALFLQL 125 (173)
T ss_pred hHHHHHHHHhhcccHHHHHHhHHHHHhhccCh-------HHHHHHHHhcCCceEEeecC--CChHHHHHHHHHHHHH
Confidence 55677778888888888888888777766532 111112 445566666 5655555555554443
No 400
>PF10835 DUF2573: Protein of unknown function (DUF2573); InterPro: IPR020393 This entry contains proteins with no known function.
Probab=21.63 E-value=3.4e+02 Score=20.04 Aligned_cols=57 Identities=18% Similarity=0.300 Sum_probs=33.7
Q ss_pred ccHHHHHHHHHhcCCCC---hhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHHHHHH
Q 006201 36 PGFLLSLAGELVNDEKP---VESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILK 99 (657)
Q Consensus 36 ~~~~~~L~~~l~~~~~~---~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~ 99 (657)
++++..-.++|..++.+ ..++.. .|-+.|.+. .+....+|...-|+.++.||..+.+
T Consensus 9 dgLveKytELL~Ge~~~e~~EkVk~W---~lYshiaKs----MPpL~kHWN~~~PeaK~~ik~li~~ 68 (82)
T PF10835_consen 9 DGLVEKYTELLLGETSPEMKEKVKQW---ALYSHIAKS----MPPLAKHWNGTYPEAKEEIKELIEE 68 (82)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHH---HHHHHHHHh----CcHHHHhhcccCchHHHHHHHHHHH
Confidence 45555666666643333 244444 334433332 2235689999999999999976544
No 401
>PF06628 Catalase-rel: Catalase-related immune-responsive; InterPro: IPR010582 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. This entry represents a small conserved region within catalase enzymes that carries the immune-responsive amphipathic octa-peptide that is recognised by T cells [].; PDB: 2CAH_A 1NM0_A 1H7K_A 1E93_A 1H6N_A 3HB6_A 2CAG_A 1M85_A 1MQF_A 1A4E_C ....
Probab=21.38 E-value=3e+02 Score=19.72 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=31.1
Q ss_pred hhhhcccCChHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHH
Q 006201 78 LVQRWLSLDSSVKAQIKSFILKTLSSPAHD-ARSTASQVVAK 118 (657)
Q Consensus 78 ~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~-vr~~aa~~l~~ 118 (657)
-...|..++++.++.+...+...|..-.+. |+......++.
T Consensus 13 a~~ly~~l~~~er~~lv~nia~~l~~v~~~~i~~r~l~~f~~ 54 (68)
T PF06628_consen 13 ARDLYRVLSDEERERLVENIAGHLSGVSDEEIQERVLAYFYK 54 (68)
T ss_dssp HHHHHHHSSHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHccCChhhHHHHHHHHHHH
Confidence 346788889999999999999999877655 77766555544
No 402
>PRK13689 hypothetical protein; Provisional
Probab=21.26 E-value=1.7e+02 Score=21.33 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=35.1
Q ss_pred CcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHHHHHHhcCC
Q 006201 34 NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSS 103 (657)
Q Consensus 34 ~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~ 103 (657)
+.+..+..++..|..+.-+.+.. +..|+|.+..... ..++++.|..|-+.+-+.|.+
T Consensus 11 qvE~il~el~~VLeKH~Ap~DLS---LMvLGN~vTnlln----------~~V~~~qR~~iAe~Fa~AL~~ 67 (75)
T PRK13689 11 QVEQLLAELLAVLEKHKAPTDLS---LMVLGNMVTNLLN----------TSVAPAQRQAIAESFARALQS 67 (75)
T ss_pred HHHHHHHHHHHHHHhcCCCccHH---HHHHHHHHHHHHh----------hcCCHHHHHHHHHHHHHHHHH
Confidence 44667777788888766677744 4455665543211 236777777777766666543
No 403
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=21.21 E-value=6.6e+02 Score=23.21 Aligned_cols=99 Identities=8% Similarity=-0.018 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhhhcc-ccccchhhHh-HHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHH
Q 006201 148 KQATLETLGYICEEVS-SDAVEQDHVN-KILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVC 225 (657)
Q Consensus 148 ~~~~l~~l~~i~~~~~-~~~l~~~~~~-~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~ 225 (657)
.-.++..|..++..-. ...+-..++. -++|.+. ...+...-..+|..++..++.++..-+....+.....++++...
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLn-tss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLN-TSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeeecccceeeHhhhh-ccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 3456666666654321 1111122222 2344333 33322455678999999999987643221111112245777777
Q ss_pred hhccCCcHHHHHHHHHHHHHHH
Q 006201 226 EATLSPEVKIRQAAFECLVAIS 247 (657)
Q Consensus 226 ~~~~~~~~~~~~~~~~~l~~l~ 247 (657)
+.+...++--+..++..+..+.
T Consensus 196 rIme~gSElSktvaifI~qkil 217 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKIL 217 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHh
Confidence 7776665555555555555544
No 404
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=21.14 E-value=2.3e+02 Score=25.39 Aligned_cols=43 Identities=23% Similarity=0.270 Sum_probs=27.0
Q ss_pred HHHHHHHHHHcccchHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHH
Q 006201 457 QQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQAL 509 (657)
Q Consensus 457 ~~il~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L 509 (657)
...++.|-.... ++.||..|+..|..+.+ +.+.-|++++++.|
T Consensus 77 ~~aL~LL~~~~~-~~~Vr~yAV~~L~~~~d---------~~l~~yLpQLVQaL 119 (184)
T smart00145 77 EDALELLSPKFP-DPFVRAYAVERLESASD---------EELLLYLLQLVQAL 119 (184)
T ss_pred HHHHHHhCccCC-CHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHH
Confidence 334444444333 57899999888876543 34667777776665
No 405
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=21.04 E-value=5.6e+02 Score=22.29 Aligned_cols=101 Identities=15% Similarity=0.124 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHHhhh--ccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHH
Q 006201 146 HTKQATLETLGYICEE--VSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRV 223 (657)
Q Consensus 146 ~~~~~~l~~l~~i~~~--~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~ 223 (657)
.....++.++..+.+. ++.+.++...+.+++..+ +.+..+..+...|+..|-+++.--+..+.. .....-++.
T Consensus 32 ~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~V----n~~~~d~~i~q~sLaILEs~Vl~S~~ly~~-V~~evt~~~ 106 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYV----NSSAMDASILQRSLAILESIVLNSPKLYQL-VEQEVTLES 106 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHH----ccccccchHHHHHHHHHHHHHhCCHHHHHH-HhccCCHHH
Confidence 4445567777776663 122334233444444433 332346788888999988877532211110 001123555
Q ss_pred HHhhccCCcHHHHHHHHHHHHHHHHHHH
Q 006201 224 VCEATLSPEVKIRQAAFECLVAISSTYY 251 (657)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 251 (657)
+...++..+.+++..++..+..+..+.+
T Consensus 107 Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 107 LIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 6667777888999888888888776544
No 406
>PF06786 UPF0253: Uncharacterised protein family (UPF0253); InterPro: IPR009624 This is a group of proteins of unknown function.
Probab=20.76 E-value=1.9e+02 Score=20.14 Aligned_cols=49 Identities=20% Similarity=0.336 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHccc------CCcchhhHHHHHHHHH
Q 006201 582 CGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIR------SATAHEEAMLAIGALA 636 (657)
Q Consensus 582 ~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~------~~~v~~~~~~~l~~l~ 636 (657)
|+.+..+...+|+. -..|++.-+...++.|++- ..++||.+..+-+.|.
T Consensus 5 CeliR~~ya~IgSG------d~gYiP~Ai~calk~Ln~iAad~~Lp~~vRE~AAfAAANLl 59 (66)
T PF06786_consen 5 CELIRELYAQIGSG------DQGYIPDAIGCALKTLNDIAADEALPEDVREQAAFAAANLL 59 (66)
T ss_pred HHHHHHHHHHhcCC------ccccCcHHHHHHHHHHHHHHcccccCHHHHHHHHHHHHHHH
Confidence 66777777788887 5568888888888888762 4468888766655543
No 407
>PRK04964 hypothetical protein; Provisional
Probab=20.74 E-value=1.9e+02 Score=20.12 Aligned_cols=50 Identities=20% Similarity=0.338 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHccc------CCcchhhHHHHHHHHH
Q 006201 581 LCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIR------SATAHEEAMLAIGALA 636 (657)
Q Consensus 581 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~------~~~v~~~~~~~l~~l~ 636 (657)
.|+.+..+-..+|+. -..|++.-+...++.|++- ..++||.+..+-+.|.
T Consensus 4 yCelvR~~ya~IgSG------d~gYiP~Ai~ca~k~L~~IAad~~Lp~~vRe~AAfAAANLl 59 (66)
T PRK04964 4 YCELVRKRYAEIGSG------DLGYVPDALGCVLKALNEIAADEALPESVREKAAYAAANLL 59 (66)
T ss_pred HHHHHHHHHHHhcCC------ccccCcHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHH
Confidence 366777777888887 5568888888888888762 3468888776655543
No 408
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=20.66 E-value=8.2e+02 Score=24.08 Aligned_cols=53 Identities=13% Similarity=0.111 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHH-HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 006201 385 EAATYAFGSILEGPSPEKLVPLVN-IALNFMLTALMQDPNNHVKDTTAWTLGRMFE 439 (657)
Q Consensus 385 ~aal~~l~~i~~~~~~~~~~~~~~-~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~ 439 (657)
..|+.-++.+.... |+...-... ..=..++..+ ++++++||..|+.++..+..
T Consensus 375 ~vAc~Di~~~Vr~~-PE~~~vl~Kyg~k~~im~L~-nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 375 CVACSDIFQLVRAS-PEINAVLSKYGVKEIIMNLI-NHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred eeeHhhHHHHHHhC-chHHHHHHHhhhHHHHHHHh-cCCCchhhHHHHHHHHHHHh
Confidence 34666677776653 443322211 1223566778 99999999999999876654
Done!