Query 006201
Match_columns 657
No_of_seqs 197 out of 1914
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 18:42:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006201.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006201hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bpt_A Importin beta-1 subunit 100.0 3.1E-57 1.1E-61 515.9 68.6 628 3-650 4-640 (861)
2 4fdd_A Transportin-1; heat rep 100.0 1.4E-56 4.6E-61 507.1 56.9 587 3-650 13-671 (852)
3 1qgr_A Protein (importin beta 100.0 9.4E-55 3.2E-59 496.3 61.5 632 3-650 1-650 (876)
4 1wa5_C Importin alpha RE-expor 100.0 1.3E-46 4.5E-51 429.1 54.6 592 3-648 5-680 (960)
5 1ibr_B P95, importin beta-1 su 100.0 7.3E-47 2.5E-51 398.7 42.1 456 3-468 1-461 (462)
6 2x19_B Importin-13; nuclear tr 100.0 1.5E-42 5.1E-47 398.3 55.5 598 4-650 25-727 (963)
7 2x1g_F Cadmus; transport prote 100.0 1.8E-43 6.3E-48 405.3 44.6 598 4-649 8-734 (971)
8 3m1i_C Exportin-1; heat repeat 100.0 2.5E-41 8.7E-46 388.7 46.7 566 3-618 16-698 (1049)
9 4hat_C Exportin-1; heat repeat 100.0 1.4E-39 4.8E-44 364.6 45.8 562 4-619 17-699 (1023)
10 3ibv_A Exportin-T; karyopherin 100.0 1.4E-38 4.9E-43 356.6 48.0 598 3-651 6-744 (980)
11 1u6g_C TIP120 protein, CAND1; 100.0 1.8E-36 6.2E-41 355.9 42.5 565 3-641 6-683 (1230)
12 3gjx_A Exportin-1; transport, 100.0 1.1E-35 3.7E-40 330.6 44.3 572 4-618 29-724 (1073)
13 4fdd_A Transportin-1; heat rep 100.0 1.5E-32 5.2E-37 310.5 46.4 559 5-650 50-712 (852)
14 2bpt_A Importin beta-1 subunit 100.0 2.1E-31 7.3E-36 303.0 55.8 565 7-651 99-725 (861)
15 1b3u_A Protein (protein phosph 100.0 3.3E-31 1.1E-35 288.0 40.6 534 4-644 11-555 (588)
16 1qgr_A Protein (importin beta 100.0 7.7E-29 2.6E-33 282.5 50.1 564 8-650 95-735 (876)
17 3a6p_A Exportin-5; exportin-5, 100.0 9.6E-30 3.3E-34 293.1 42.7 509 1-559 9-682 (1204)
18 1u6g_C TIP120 protein, CAND1; 100.0 1.1E-29 3.9E-34 298.3 44.0 537 38-650 7-611 (1230)
19 1b3u_A Protein (protein phosph 100.0 7.3E-30 2.5E-34 277.4 38.5 530 4-636 49-586 (588)
20 1wa5_C Importin alpha RE-expor 99.8 4.2E-16 1.4E-20 177.8 54.3 488 15-559 49-652 (960)
21 1ibr_B P95, importin beta-1 su 99.8 3.4E-18 1.2E-22 179.4 33.7 405 96-557 5-460 (462)
22 2x19_B Importin-13; nuclear tr 99.8 9.1E-16 3.1E-20 176.0 51.3 573 5-648 105-765 (963)
23 2vgl_B AP-2 complex subunit be 99.8 2.7E-17 9.4E-22 176.7 35.9 511 4-635 14-530 (591)
24 2x1g_F Cadmus; transport prote 99.8 4.3E-17 1.5E-21 186.8 38.4 567 4-642 86-765 (971)
25 2vgl_B AP-2 complex subunit be 99.8 6.4E-17 2.2E-21 173.8 36.9 441 3-542 49-499 (591)
26 2jdq_A Importin alpha-1 subuni 99.8 9.7E-18 3.3E-22 175.3 26.3 401 94-536 22-443 (450)
27 2jdq_A Importin alpha-1 subuni 99.8 8.9E-18 3E-22 175.6 26.0 365 127-539 13-393 (450)
28 1wa5_B Importin alpha subunit; 99.8 4.4E-17 1.5E-21 173.7 24.9 401 94-537 89-511 (530)
29 4b8j_A Importin subunit alpha- 99.7 1.5E-16 5.2E-21 169.6 23.5 416 176-649 76-509 (528)
30 1wa5_B Importin alpha subunit; 99.7 5.5E-16 1.9E-20 165.2 26.0 407 36-487 86-511 (530)
31 4hat_C Exportin-1; heat repeat 99.7 3E-13 1E-17 152.0 49.2 587 17-651 114-799 (1023)
32 2qk1_A Protein STU2; STU2P, XM 99.7 2.7E-16 9.1E-21 147.9 19.2 213 363-609 12-234 (249)
33 1w63_A Adapter-related protein 99.7 2.6E-14 8.8E-19 154.0 36.0 448 5-536 72-577 (618)
34 3ibv_A Exportin-T; karyopherin 99.7 2.8E-13 9.6E-18 152.2 44.0 583 4-651 89-782 (980)
35 3m1i_C Exportin-1; heat repeat 99.7 4.8E-13 1.6E-17 153.9 46.5 583 16-650 113-798 (1049)
36 4b8j_A Importin subunit alpha- 99.7 6.4E-14 2.2E-18 149.3 34.4 392 3-440 74-497 (528)
37 2z6g_A B-catenin; FULL-length, 99.7 2.1E-14 7.2E-19 158.9 30.8 482 95-636 118-621 (780)
38 1jdh_A Beta-catenin; beta-cate 99.7 1.9E-13 6.5E-18 145.9 36.9 465 7-534 21-528 (529)
39 2z6h_A Catenin beta-1, beta-ca 99.7 1.5E-13 5E-18 149.8 36.6 467 6-539 17-530 (644)
40 2z6g_A B-catenin; FULL-length, 99.7 5.3E-14 1.8E-18 155.7 33.2 469 7-541 154-668 (780)
41 1w63_A Adapter-related protein 99.7 3.3E-13 1.1E-17 145.4 38.4 507 11-637 42-577 (618)
42 3now_A UNC-45 protein, SD10334 99.7 9.4E-14 3.2E-18 149.7 32.8 464 14-538 258-784 (810)
43 2qk2_A LP04448P; mini spindles 99.6 3E-15 1E-19 141.5 17.0 212 362-615 10-225 (242)
44 3now_A UNC-45 protein, SD10334 99.6 4.9E-13 1.7E-17 144.1 36.0 558 15-638 62-695 (810)
45 2z6h_A Catenin beta-1, beta-ca 99.6 1.2E-13 4.2E-18 150.4 29.9 476 93-637 15-527 (644)
46 2vgl_A Adaptor protein complex 99.6 6.2E-12 2.1E-16 134.9 40.0 439 5-534 76-587 (621)
47 3ul1_B Importin subunit alpha- 99.6 7.1E-13 2.4E-17 139.7 30.3 384 5-439 59-478 (510)
48 3tpo_A Importin subunit alpha- 99.6 1.4E-13 4.8E-18 146.0 22.0 365 129-539 74-452 (529)
49 3gjx_A Exportin-1; transport, 99.6 8.7E-10 3E-14 123.4 53.1 601 5-651 108-825 (1073)
50 3tpo_A Importin subunit alpha- 99.6 2.6E-12 9E-17 136.2 31.2 390 4-439 77-497 (529)
51 1jdh_A Beta-catenin; beta-cate 99.5 2.3E-12 7.8E-17 137.5 29.1 474 91-635 16-528 (529)
52 3ul1_B Importin subunit alpha- 99.5 1.6E-13 5.3E-18 144.7 19.6 361 133-539 59-433 (510)
53 2qk2_A LP04448P; mini spindles 99.5 2.5E-13 8.6E-18 128.2 17.9 197 341-559 27-229 (242)
54 2vgl_A Adaptor protein complex 99.5 7.3E-11 2.5E-15 126.5 38.4 505 16-636 51-588 (621)
55 2qk1_A Protein STU2; STU2P, XM 99.5 1.3E-12 4.5E-17 122.7 17.6 196 341-549 28-234 (249)
56 1oyz_A Hypothetical protein YI 99.3 1.5E-10 5.3E-15 111.9 23.0 252 176-531 25-277 (280)
57 1oyz_A Hypothetical protein YI 99.3 3.6E-10 1.2E-14 109.2 22.3 253 94-435 25-278 (280)
58 1xm9_A Plakophilin 1; armadill 99.3 3.1E-09 1.1E-13 110.0 28.7 353 133-536 4-449 (457)
59 2iw3_A Elongation factor 3A; a 99.2 8.3E-08 2.8E-12 105.3 36.0 330 96-515 18-356 (986)
60 3l6x_A Catenin delta-1; cateni 99.2 9.8E-09 3.3E-13 107.0 26.6 366 127-536 43-476 (584)
61 4hxt_A De novo protein OR329; 99.1 1.4E-09 4.7E-14 103.3 17.3 232 221-488 4-243 (252)
62 4db8_A Armadillo-repeat protei 99.1 5.5E-10 1.9E-14 106.1 14.1 230 221-486 14-251 (252)
63 4hxt_A De novo protein OR329; 99.1 2.7E-09 9.2E-14 101.3 18.3 235 176-442 4-244 (252)
64 1xm9_A Plakophilin 1; armadill 99.1 7.7E-09 2.6E-13 107.1 23.0 365 95-486 5-449 (457)
65 4db8_A Armadillo-repeat protei 99.1 1.1E-09 3.8E-14 104.0 15.2 232 176-439 14-251 (252)
66 3opb_A SWI5-dependent HO expre 99.1 1.8E-07 6E-12 99.2 32.3 402 84-517 284-760 (778)
67 3ltj_A Alpharep-4; protein eng 99.1 6.9E-09 2.3E-13 94.6 18.3 184 218-485 13-197 (201)
68 3l6x_A Catenin delta-1; cateni 99.1 6.8E-08 2.3E-12 100.8 27.3 368 95-486 51-476 (584)
69 3ltm_A Alpha-REP4; protein eng 99.1 3.9E-09 1.3E-13 97.1 16.0 188 174-442 19-206 (211)
70 2iw3_A Elongation factor 3A; a 99.1 1.1E-08 3.7E-13 112.1 21.8 268 219-539 54-327 (986)
71 3ltm_A Alpha-REP4; protein eng 99.0 2.2E-08 7.4E-13 92.1 19.4 186 4-250 20-205 (211)
72 3ltj_A Alpharep-4; protein eng 99.0 3.1E-08 1.1E-12 90.2 19.4 181 5-246 16-196 (201)
73 3nmz_A APC variant protein; pr 98.9 1E-07 3.6E-12 97.0 22.9 220 232-487 213-451 (458)
74 3opb_A SWI5-dependent HO expre 98.9 4.6E-06 1.6E-10 88.5 32.4 473 93-638 133-684 (778)
75 4db6_A Armadillo repeat protei 98.9 3.3E-08 1.1E-12 90.8 14.4 193 93-289 13-209 (210)
76 3a6p_A Exportin-5; exportin-5, 98.8 5.3E-05 1.8E-09 87.7 43.7 447 15-514 108-681 (1204)
77 2db0_A 253AA long hypothetical 98.8 7.3E-07 2.5E-11 74.6 20.0 214 218-485 31-245 (253)
78 3nmz_A APC variant protein; pr 98.8 4.5E-07 1.5E-11 92.3 22.3 361 131-541 32-455 (458)
79 4db6_A Armadillo repeat protei 98.8 1.1E-07 3.9E-12 87.1 14.4 192 219-439 12-209 (210)
80 2db0_A 253AA long hypothetical 98.8 3.2E-06 1.1E-10 70.8 21.0 214 130-394 31-244 (253)
81 1xqr_A HSPBP1 protein; armadil 98.7 1.7E-07 5.7E-12 89.9 13.9 249 21-287 10-285 (296)
82 4ady_A RPN2, 26S proteasome re 98.7 1.3E-05 4.5E-10 86.9 28.4 267 106-439 451-719 (963)
83 4ady_A RPN2, 26S proteasome re 98.6 7.1E-05 2.4E-09 81.3 30.5 301 103-484 406-717 (963)
84 1xqr_A HSPBP1 protein; armadil 98.6 1.2E-06 4.2E-11 83.8 15.3 151 370-539 84-241 (296)
85 2of3_A ZYG-9; multifunctional 98.6 2.9E-06 1E-10 78.4 17.1 180 230-442 57-239 (266)
86 4ffb_C Protein STU2; tubulin f 98.5 2E-06 6.7E-11 82.5 16.6 182 341-541 21-217 (278)
87 3nmw_A APC variant protein; AR 98.5 5E-06 1.7E-10 81.9 18.8 240 36-290 72-335 (354)
88 4ffb_C Protein STU2; tubulin f 98.4 3.7E-06 1.3E-10 80.5 13.7 195 372-595 14-217 (278)
89 3tjz_B Coatomer subunit gamma; 98.4 8.8E-06 3E-10 79.1 16.0 306 99-478 32-345 (355)
90 2of3_A ZYG-9; multifunctional 98.3 1.1E-05 3.7E-10 74.6 14.5 198 370-608 49-248 (266)
91 3nmw_A APC variant protein; AR 98.3 4.1E-05 1.4E-09 75.4 19.6 228 188-442 96-337 (354)
92 3b2a_A TON_1937, putative unch 98.3 0.00016 5.5E-09 63.7 19.9 219 218-481 32-256 (265)
93 3tjz_B Coatomer subunit gamma; 98.2 1.7E-06 5.8E-11 84.1 7.9 247 5-286 70-350 (355)
94 3b2a_A TON_1937, putative unch 98.2 0.001 3.4E-08 58.7 23.9 148 130-289 32-179 (265)
95 1te4_A Conserved protein MTH18 98.2 6.3E-07 2.2E-11 74.8 3.4 121 364-533 9-130 (131)
96 1vsy_5 Proteasome activator BL 98.1 0.00037 1.3E-08 77.8 23.9 406 92-541 508-971 (997)
97 3grl_A General vesicular trans 98.1 0.0022 7.5E-08 66.4 27.3 323 130-486 20-394 (651)
98 4gmo_A Putative uncharacterize 98.0 0.002 6.9E-08 69.9 27.5 157 132-293 36-218 (684)
99 1te4_A Conserved protein MTH18 98.0 1.4E-05 4.9E-10 66.5 7.9 104 343-483 26-130 (131)
100 3oc3_A Helicase MOT1, MOT1; re 98.0 0.00074 2.5E-08 67.5 20.1 253 127-435 169-432 (800)
101 3oc3_A Helicase MOT1, MOT1; re 97.9 0.0002 6.9E-09 71.4 15.5 159 343-535 242-403 (800)
102 3tt9_A Plakophilin-2; cell adh 97.5 0.00057 1.9E-08 62.3 10.4 176 367-562 8-208 (233)
103 3grl_A General vesicular trans 97.5 0.035 1.2E-06 57.7 24.3 319 89-439 18-394 (651)
104 1vsy_5 Proteasome activator BL 97.5 0.031 1.1E-06 62.5 25.8 440 107-591 481-967 (997)
105 3l9t_A Putative uncharacterize 97.4 0.0046 1.6E-07 55.1 15.2 147 90-257 69-216 (240)
106 3tt9_A Plakophilin-2; cell adh 97.0 0.0096 3.3E-07 54.2 13.0 188 95-288 11-228 (233)
107 3u0r_A Apoptosis inhibitor 5; 97.0 0.35 1.2E-05 48.0 24.4 237 6-269 32-321 (507)
108 1vsy_4 Proteasome activator BL 96.8 0.81 2.8E-05 49.8 36.8 273 312-618 331-667 (799)
109 1lrv_A LRV, leucine-rich repea 96.6 0.0006 2E-08 62.7 2.0 186 99-435 57-242 (244)
110 3l9t_A Putative uncharacterize 96.6 0.19 6.6E-06 44.9 17.7 169 1-205 35-207 (240)
111 4gmo_A Putative uncharacterize 96.6 0.0053 1.8E-07 66.6 9.1 155 367-537 35-215 (684)
112 4atg_A TAF6; transcription, TF 96.5 0.045 1.5E-06 47.6 12.4 128 351-486 27-162 (196)
113 3gs3_A Symplekin, LD45768P; he 96.1 0.76 2.6E-05 42.1 19.2 165 87-255 48-250 (257)
114 2npp_B PP2A, B subunit, serine 95.9 0.51 1.7E-05 47.0 18.6 228 5-255 164-406 (449)
115 3fga_B Serine/threonine-protei 95.5 0.67 2.3E-05 45.3 17.3 228 5-255 131-373 (403)
116 3gs3_A Symplekin, LD45768P; he 95.5 0.87 3E-05 41.8 17.2 115 125-248 48-173 (257)
117 3u0r_A Apoptosis inhibitor 5; 95.3 2.7 9.1E-05 41.9 35.8 321 176-562 31-399 (507)
118 1w9c_A CRM1 protein, exportin 95.3 0.13 4.4E-06 48.6 10.9 150 472-640 44-199 (321)
119 3o2t_A Symplekin; heat repeat, 95.1 1.5 5.1E-05 42.8 18.3 161 92-257 63-265 (386)
120 1lrv_A LRV, leucine-rich repea 94.7 0.012 4E-07 54.1 2.1 203 23-392 40-242 (244)
121 3o2t_A Symplekin; heat repeat, 94.3 2.6 8.9E-05 41.1 17.8 114 125-247 58-182 (386)
122 4atg_A TAF6; transcription, TF 94.0 2.8 9.6E-05 36.4 16.8 85 522-622 61-145 (196)
123 1lsh_A Lipovitellin (LV-1N, LV 91.7 9.4 0.00032 43.4 20.0 128 97-245 396-540 (1056)
124 1w9c_A CRM1 protein, exportin 91.2 10 0.00035 35.8 16.6 139 141-281 83-238 (321)
125 1lsh_A Lipovitellin (LV-1N, LV 91.2 1.9 6.5E-05 49.0 13.7 156 343-540 409-580 (1056)
126 2jak_A Serine/threonine-protei 91.0 3.1 0.00011 40.5 13.0 180 5-201 176-363 (392)
127 2fv2_A RCD1 required for cell 89.9 7.4 0.00025 35.1 13.3 212 3-249 3-225 (268)
128 1vsy_4 Proteasome activator BL 87.5 36 0.0012 37.0 44.0 373 83-487 15-456 (799)
129 1upk_A MO25 protein; transfera 85.2 26 0.00088 33.2 23.2 185 96-289 82-283 (341)
130 3dad_A FH1/FH2 domain-containi 84.2 29 0.00098 32.9 15.3 146 3-162 118-288 (339)
131 1juq_A ADP-ribosylation factor 84.2 18 0.00061 30.7 12.2 100 375-489 25-131 (171)
132 3fga_B Serine/threonine-protei 83.1 36 0.0012 33.2 23.0 117 218-361 250-369 (403)
133 3dad_A FH1/FH2 domain-containi 82.9 32 0.0011 32.5 14.8 150 136-290 123-287 (339)
134 2npp_B PP2A, B subunit, serine 82.9 40 0.0014 33.5 23.4 115 218-359 283-400 (449)
135 1x5b_A Signal transducing adap 80.6 24 0.00083 29.5 11.6 78 456-541 50-130 (163)
136 1upk_A MO25 protein; transfera 80.4 40 0.0014 31.9 18.0 151 131-290 78-239 (341)
137 2jak_A Serine/threonine-protei 76.3 36 0.0012 33.1 12.8 232 378-648 140-383 (392)
138 1x5b_A Signal transducing adap 74.7 37 0.0013 28.4 12.1 75 408-489 51-128 (163)
139 3ldz_A STAM-1, signal transduc 71.5 39 0.0013 27.4 11.1 99 375-489 17-117 (140)
140 3ldz_A STAM-1, signal transduc 70.4 42 0.0014 27.2 12.0 78 455-541 39-119 (140)
141 1vdy_A Hypothetical protein (R 69.5 25 0.00085 28.5 8.3 34 257-290 46-79 (140)
142 1mhq_A ADP-ribosylation factor 65.9 54 0.0019 26.9 10.3 99 375-489 13-119 (148)
143 1mhq_A ADP-ribosylation factor 65.7 38 0.0013 27.8 9.0 77 130-207 37-118 (148)
144 2b6c_A Hypothetical protein EF 64.6 20 0.00069 31.9 7.8 89 341-442 102-191 (220)
145 3g2s_A C-terminal fragment of 63.9 60 0.002 26.6 12.9 81 455-541 45-131 (149)
146 2fv2_A RCD1 required for cell 63.1 88 0.003 28.3 11.3 141 147-290 72-225 (268)
147 3g2s_A C-terminal fragment of 61.7 66 0.0022 26.4 10.6 77 174-252 48-130 (149)
148 1vdy_A Hypothetical protein (R 59.8 15 0.0005 29.8 5.2 35 128-162 46-80 (140)
149 3zyq_A Hepatocyte growth facto 59.2 75 0.0026 28.2 10.5 100 375-489 20-121 (226)
150 1t06_A Hypothetical protein; s 57.3 36 0.0012 30.5 8.2 71 366-441 107-182 (235)
151 1sz9_A PCF11 protein; RNA poly 53.6 89 0.003 25.4 9.4 86 116-206 30-115 (144)
152 1dvp_A HRS, hepatocyte growth 52.2 1.2E+02 0.0043 26.6 11.5 80 455-540 39-119 (220)
153 1ho8_A Vacuolar ATP synthase s 52.0 23 0.00078 35.5 6.2 71 131-206 395-477 (480)
154 3zyq_A Hepatocyte growth facto 51.7 1.3E+02 0.0044 26.7 12.6 80 456-541 43-123 (226)
155 3qml_C Protein SLS1, nucleotid 51.1 95 0.0032 28.9 9.7 79 4-85 23-115 (315)
156 3jxy_A Alkylpurine DNA glycosy 50.6 1.4E+02 0.0046 26.6 14.8 121 51-204 73-194 (232)
157 1elk_A Target of MYB1; superhe 48.3 51 0.0018 27.3 7.0 83 501-595 50-135 (157)
158 1dvp_A HRS, hepatocyte growth 48.1 1.4E+02 0.0049 26.2 12.9 100 375-489 17-118 (220)
159 3s4w_B Protein FACD2, fanconi 47.7 3.8E+02 0.013 30.9 15.8 134 52-204 358-506 (1323)
160 2b6c_A Hypothetical protein EF 46.2 1.5E+02 0.0053 26.0 11.9 137 98-258 61-198 (220)
161 3ebb_A Phospholipase A2-activa 43.7 2.1E+02 0.0071 26.8 14.3 144 382-537 117-264 (304)
162 4flb_A Regulation of nuclear P 42.3 1.3E+02 0.0043 23.9 11.6 67 406-489 5-72 (132)
163 4fu3_A Regulation of nuclear P 41.7 84 0.0029 25.0 7.3 62 411-489 9-71 (135)
164 3rru_A TOM1L1 protein; structu 41.3 1.5E+02 0.005 24.4 9.0 88 455-551 50-146 (152)
165 1sz9_A PCF11 protein; RNA poly 39.1 1E+02 0.0035 25.0 7.3 76 365-442 41-117 (144)
166 3qml_C Protein SLS1, nucleotid 36.3 1.6E+02 0.0056 27.3 8.8 97 102-204 80-188 (315)
167 3s51_A Protein FACI, fanconi a 34.6 5.8E+02 0.02 29.3 16.5 95 173-270 514-635 (1308)
168 1ho8_A Vacuolar ATP synthase s 34.1 34 0.0011 34.3 4.2 32 92-123 447-478 (480)
169 3ebb_A Phospholipase A2-activa 33.6 3E+02 0.01 25.7 12.9 115 130-248 146-263 (304)
170 3jxy_A Alkylpurine DNA glycosy 30.0 2.9E+02 0.0099 24.4 12.8 138 98-259 67-206 (232)
171 1elk_A Target of MYB1; superhe 29.5 2.4E+02 0.0081 23.2 11.3 80 455-540 50-134 (157)
172 3rru_A TOM1L1 protein; structu 29.0 73 0.0025 26.2 4.8 96 501-613 50-148 (152)
173 4f52_E Glomulin; cullin-ring E 27.7 5.3E+02 0.018 26.7 15.9 85 455-541 314-400 (596)
174 3gae_A Protein DOA1; UFD3, CDC 26.2 2.4E+02 0.0082 25.5 8.3 98 51-160 102-217 (253)
175 4fu3_A Regulation of nuclear P 26.0 2.4E+02 0.0083 22.2 9.8 80 457-554 6-89 (135)
176 3d9j_A RNA-binding protein 16; 23.9 2.9E+02 0.0098 22.3 8.6 59 500-561 38-100 (145)
177 3d9j_A RNA-binding protein 16; 21.8 2.7E+02 0.0093 22.5 7.0 84 115-203 28-117 (145)
178 3l3f_X Protein DOA1, DOA1/UFD3 21.2 1.7E+02 0.0059 28.1 6.4 98 50-160 210-326 (362)
179 3pst_A Protein DOA1; protein d 20.3 2.4E+02 0.0083 27.7 7.4 98 50-160 273-389 (425)
No 1
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=3.1e-57 Score=515.85 Aligned_cols=628 Identities=34% Similarity=0.566 Sum_probs=535.4
Q ss_pred hHHHHHHHHh-cCCChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhh
Q 006201 3 AEVTQILLNA-QSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (657)
Q Consensus 3 ~~l~~~l~~~-~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (657)
+++.++|.++ .|||+++|++|+++|++++++++|+|+..|++++.+++.+.++|++|+++||+.++++|....++....
T Consensus 4 ~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~ 83 (861)
T 2bpt_A 4 AEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQR 83 (861)
T ss_dssp HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHh
Confidence 5799999999 999999999999999999887789999999999998667899999999999999999998887777788
Q ss_pred ccc-CChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCC-ChhHHHHHHHHHHHHh
Q 006201 82 WLS-LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQL-PPHTKQATLETLGYIC 159 (657)
Q Consensus 82 ~~~-l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~~l~~l~~i~ 159 (657)
|.. ++++.+..||+.+++.+.++++.+|++++.+++.|+..++|.+.||+++|.+.+.++++ ++..|+.++.++..++
T Consensus 84 ~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~ 163 (861)
T 2bpt_A 84 WITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMC 163 (861)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHH
T ss_pred HhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 997 99999999999999999999999999999999999999988559999999999999998 9999999999999999
Q ss_pred hhccccc--cchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHH
Q 006201 160 EEVSSDA--VEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQ 237 (657)
Q Consensus 160 ~~~~~~~--l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~ 237 (657)
+.+.++. + .++...+++.+.+.+.+++.+.+||..+++++..++.++...+.....++.+++.+...++++++++|.
T Consensus 164 ~~~~~~~~~~-~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~ 242 (861)
T 2bpt_A 164 ESADPQSQAL-VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQA 242 (861)
T ss_dssp HTSSTTSSTT-GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHH
T ss_pred HcCChhhhHH-HHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHH
Confidence 9874432 4 567889999999999842238999999999999998887765554444567888888888889999999
Q ss_pred HHHHHHHHHHHHHHHhhHHhHH-HHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHh
Q 006201 238 AAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKH 316 (657)
Q Consensus 238 ~~~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (657)
.+++++..+++.+++.+.+++. .+++.++..+.+.++++|..++++|..+++..........+. +......+++.+.
T Consensus 243 ~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 320 (861)
T 2bpt_A 243 AAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQF--PQSPLQSYNFALS 320 (861)
T ss_dssp HHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHC--TTCSCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhc--cCCchhhHHHHHH
Confidence 9999999999999999999999 999999999999999999999999999998653221110000 0000012345677
Q ss_pred hhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhc
Q 006201 317 ALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILE 396 (657)
Q Consensus 317 ~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~ 396 (657)
++..++|.++..|.+.++|+ ++++|++|.+|..+|+.++..+|+.+++.+++++.+.+.+++|+.|++|+.+++.+++
T Consensus 321 ~~~~il~~ll~~l~~~~~d~--~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~ 398 (861)
T 2bpt_A 321 SIKDVVPNLLNLLTRQNEDP--EDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMD 398 (861)
T ss_dssp HHHHHHHHHHHHTTCCCCC---CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHhccccc--ccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHc
Confidence 78889999999888655443 3456999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHcccchHHHHH
Q 006201 397 GPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEK 476 (657)
Q Consensus 397 ~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~ 476 (657)
++.++.+.++++.+++.++..+ +|+++.||.++++++|+++..+... .....+++.+++.+++.++++++||..
T Consensus 399 ~~~~~~~~~~l~~il~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~-----~~~~~~~~~~l~~l~~~l~~~~~v~~~ 472 (861)
T 2bpt_A 399 GPDKVQRTYYVHQALPSILNLM-NDQSLQVKETTAWCIGRIADSVAES-----IDPQQHLPGVVQACLIGLQDHPKVATN 472 (861)
T ss_dssp SSCHHHHHHHHHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHHGGG-----SCTTTTHHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHhhhh-----cCCHHHHHHHHHHHHHHhccChHHHHH
Confidence 8743667788999999999999 9999999999999999999988621 123678999999999999888899999
Q ss_pred HHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Q 006201 477 ACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMME 556 (657)
Q Consensus 477 a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~ 556 (657)
|++++..+++.+++ ..+..+.||++.+++.|++.+...+. +.++|..++++++.++...+..+.+|+..++|.+++.
T Consensus 473 a~~al~~l~~~~~~--~~~~~l~~~~~~il~~L~~~l~~~d~-~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~ 549 (861)
T 2bpt_A 473 CSWTIINLVEQLAE--ATPSPIYNFYPALVDGLIGAANRIDN-EFNARASAFSALTTMVEYATDTVAETSASISTFVMDK 549 (861)
T ss_dssp HHHHHHHHHHHHSS--SSSCGGGGGHHHHHHHHHHHHTCSCC-GGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc--ccchhhHHHHHHHHHHHHHHHhCcCc-chHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHH
Confidence 99999999998642 11356889999999999999986543 3688999999999999999999999999999999999
Q ss_pred HHHHHh--hhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHcccCC-cchhhHHHHHH
Q 006201 557 LHQTLE--AQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSA-TAHEEAMLAIG 633 (657)
Q Consensus 557 l~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~-~v~~~~~~~l~ 633 (657)
+...+. ....++++.+....++..++++++.++..+|.. +.||.+.+++.++..++..+. .+++.++.+++
T Consensus 550 l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~------~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~ 623 (861)
T 2bpt_A 550 LGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSS------VEPVADMLMGLFFRLLEKKDSAFIEDDVFYAIS 623 (861)
T ss_dssp HHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGG------TGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHH
T ss_pred HHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHH
Confidence 987531 111233333334567888999999999999997 999999999999999998766 89999999999
Q ss_pred HHHHHhchhhhhccccc
Q 006201 634 ALAYATGLCHHRRCCWG 650 (657)
Q Consensus 634 ~l~~~~g~~f~~y~~~~ 650 (657)
.++..+|.+|.||++..
T Consensus 624 ~l~~~~~~~~~~~l~~i 640 (861)
T 2bpt_A 624 ALAASLGKGFEKYLETF 640 (861)
T ss_dssp HHHHHHGGGGHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHH
Confidence 99999999999998753
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=1.4e-56 Score=507.14 Aligned_cols=587 Identities=20% Similarity=0.343 Sum_probs=495.6
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhc-CCCChhHHHHHHHHHhhhcccchhhhHHHhhhh
Q 006201 3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVN-DEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (657)
Q Consensus 3 ~~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~-~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (657)
+++.++|+++.|||+++|++|+++|++++++ |+|..+|..++.+ .+.+..+|++|+++|||.+.+ .
T Consensus 13 ~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~--p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~-----------~ 79 (852)
T 4fdd_A 13 QQILQLLKESQSPDTTIQRTVQQKLEQLNQY--PDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKA-----------H 79 (852)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTT-----------S
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHhC--CCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHH-----------c
Confidence 3688999999999999999999999999876 9999999999985 467899999999999999975 4
Q ss_pred cccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhh
Q 006201 82 WLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEE 161 (657)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~ 161 (657)
|..++++.+..||+.+++.|.++++.+|+.++.+++.|++.+++ +.||++++.+.+.++++++..|++++.+++.+++.
T Consensus 80 w~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~-~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~ 158 (852)
T 4fdd_A 80 FQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICED 158 (852)
T ss_dssp GGGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTT-TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 66799999999999999999999999999999999999999977 69999999999999999999999999999999998
Q ss_pred ccccccc----hhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHH
Q 006201 162 VSSDAVE----QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQ 237 (657)
Q Consensus 162 ~~~~~l~----~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~ 237 (657)
. +..+. ......++|.+.+++. +++++||..|++++..++...+..+. ...+.+++.+...++++++++|.
T Consensus 159 ~-~~~~~~~~~~~~~~~il~~l~~~l~--~~~~~vR~~A~~aL~~~~~~~~~~~~--~~~~~~l~~l~~~~~d~~~~vr~ 233 (852)
T 4fdd_A 159 S-AEILDSDVLDRPLNIMIPKFLQFFK--HSSPKIRSHAVACVNQFIISRTQALM--LHIDSFIENLFALAGDEEPEVRK 233 (852)
T ss_dssp H-TTHHHHCSSSSCHHHHHHHHTTTTT--CSSHHHHHHHHHHHHTTTTTTCHHHH--TSHHHHHHHHHHHHTCCCHHHHH
T ss_pred h-HHHhchhhhcchHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhcccHHHH--HHHHHHHHHHHHHcCCCCHHHHH
Confidence 8 44331 1236889999999998 78999999999999886654322111 11246788888888899999999
Q ss_pred HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhh
Q 006201 238 AAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHA 317 (657)
Q Consensus 238 ~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (657)
.++++|..+++.+++.+.+|++.+++.++..+++.++++|..|+++|.++++.. ..+++++++
T Consensus 234 ~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~-----------------~~~~~~~~~ 296 (852)
T 4fdd_A 234 NVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQP-----------------ICKDVLVRH 296 (852)
T ss_dssp HHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTST-----------------THHHHHTTT
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcch-----------------hHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998642 133556778
Q ss_pred hhhHHHHHHHHhhhhc-----------CccccCC--CcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhH
Q 006201 318 LPVLVPLLLETLLKQE-----------EDQDQDE--GAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQR 384 (657)
Q Consensus 318 l~~l~~~l~~~l~~~~-----------~d~~~d~--~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r 384 (657)
++.++|.+++.|.+.+ +|+++|+ +.|++|++|..+|+.++...|+.+++.+++++.+.+.+++|++|
T Consensus 297 ~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R 376 (852)
T 4fdd_A 297 LPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVK 376 (852)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHH
Confidence 8889999998884321 2222222 57999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHH
Q 006201 385 EAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLL 464 (657)
Q Consensus 385 ~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~ 464 (657)
++|+.++|.+++++. +.+.++++.+++.++..+ +|+++.||.+++|++|+++++... .....++..+++.++
T Consensus 377 ~aa~~alg~i~~~~~-~~~~~~l~~~l~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~------~~~~~~~~~ll~~L~ 448 (852)
T 4fdd_A 377 ESGILVLGAIAEGCM-QGMIPYLPELIPHLIQCL-SDKKALVRSITCWTLSRYAHWVVS------QPPDTYLKPLMTELL 448 (852)
T ss_dssp HHHHHHHHHTTTTTH-HHHGGGHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHTHHHHHH------SCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhcc------chHHHHHHHHHHHHH
Confidence 999999999999874 566788999999999999 999999999999999999998762 245788999999999
Q ss_pred HHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccc-------------------------
Q 006201 465 QSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDA------------------------- 518 (657)
Q Consensus 465 ~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~------------------------- 518 (657)
+.+.| ++.||..|++++..+++.++ ..+.||++.+++.|+..+++.+.
T Consensus 449 ~~L~d~~~~vr~~a~~aL~~l~~~~~------~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~ 522 (852)
T 4fdd_A 449 KRILDSNKRVQEAACSAFATLEEEAC------TELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPE 522 (852)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHG------GGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhh------HhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHH
Confidence 99986 78999999999999998864 34789999999999888764321
Q ss_pred ------------------hhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhh-------h-cCChhHHH
Q 006201 519 ------------------GESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEA-------Q-KLSSDERE 572 (657)
Q Consensus 519 ------------------~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~-------~-~~~~~~~~ 572 (657)
.+..++ .++++++.++...|..+.||+..+++.+++.+.+.+.. + .....+.
T Consensus 523 ~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~- 600 (852)
T 4fdd_A 523 YIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDK- 600 (852)
T ss_dssp HHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCT-
T ss_pred HHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcc-
Confidence 012233 46788888888888888899888888888877765421 1 1111122
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHH--HHHHHHHHHHHcccCCcchhhHHHHHHHHHHHhchhhhhccccc
Q 006201 573 KQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYA--DQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGLCHHRRCCWG 650 (657)
Q Consensus 573 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~v~~~~~~~l~~l~~~~g~~f~~y~~~~ 650 (657)
.++..+++.++.++..+|.+ |.+|+ +.+++.++..+.++++++|+.++.+++.++..+|..|.+|++..
T Consensus 601 ---~~~~~~l~~l~~l~~~l~~~------~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~ 671 (852)
T 4fdd_A 601 ---DFMIVALDLLSGLAEGLGGN------IEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADF 671 (852)
T ss_dssp ---HHHHHHHHHHHHHHHHHGGG------GHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHH
T ss_pred ---hHHHHHHHHHHHHHHHHhHh------HHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 35667899999999999988 99998 78999999999988889999999999999999999999998764
No 3
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=9.4e-55 Score=496.34 Aligned_cols=632 Identities=39% Similarity=0.637 Sum_probs=528.7
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhc
Q 006201 3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRW 82 (657)
Q Consensus 3 ~~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~ 82 (657)
|++.++|..+.++|+++|++|+++|+++.++++++|+..|++++.+++.+..+|++|+++||+.+...|...+......|
T Consensus 1 ~~l~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w 80 (876)
T 1qgr_A 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (876)
T ss_dssp CCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhh
Confidence 47999999999999999999999999998877799999999999986568999999999999999888876666667889
Q ss_pred ccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCC--ChhHHHHHHHHHHHHhh
Q 006201 83 LSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQL--PPHTKQATLETLGYICE 160 (657)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~~l~~l~~i~~ 160 (657)
..++++.+..||+.+++.+.++++.+ +.++.+++.+++.++|...||+++|.+.+.++++ ++..|..++.++..+++
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (876)
T 1qgr_A 81 LAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (876)
T ss_dssp HTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988778 9999999999999888669999999999999998 89999999999999998
Q ss_pred hccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHH
Q 006201 161 EVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAF 240 (657)
Q Consensus 161 ~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~ 240 (657)
.+.++.+ ..+...+++.+.+.+.+++++..+|..|++++..++.++...+.....+..+++.+...++++++++|..++
T Consensus 160 ~~~~~~~-~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~ 238 (876)
T 1qgr_A 160 DIDPEQL-QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAAL 238 (876)
T ss_dssp HSCHHHH-GGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred hcCHhhH-HhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 7644555 677889999999999853337899999999999998877655544433456888888888888999999999
Q ss_pred HHHHHHHHHHHHhhHHhHH-HHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCC-CCCCCCC-CchhhHHHhh
Q 006201 241 ECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGG-DFSGDSD-IPCFYFIKHA 317 (657)
Q Consensus 241 ~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~ 317 (657)
+++..+++.+++.+.+++. .+++.++..+.+.++.++..++++|..+++...+......+ ..++... .+...+.+..
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (876)
T 1qgr_A 239 QNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA 318 (876)
T ss_dssp HHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHH
Confidence 9999999999999999999 99999999999999999999999999999765322110000 0000000 1233566677
Q ss_pred hhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcC
Q 006201 318 LPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEG 397 (657)
Q Consensus 318 l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~ 397 (657)
++.++|.+++.+...++|+ |+++|++|.+|..+++.++..+|+.+++.+++.+...+.+++|++|++|+.+++.++++
T Consensus 319 ~~~ll~~ll~~l~~~~~d~--~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~ 396 (876)
T 1qgr_A 319 LQYLVPILTQTLTKQDEND--DDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG 396 (876)
T ss_dssp HHHHHHHHHHHTTCCCSSC--CTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred HHHHhHHHHHHhhcccccc--cccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcC
Confidence 7889999999887655443 34569999999999999999999888999999999999999999999999999999998
Q ss_pred CCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHcccchHHHHHH
Q 006201 398 PSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKA 477 (657)
Q Consensus 398 ~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a 477 (657)
+.++.+.++++.++|.++..+ +|+++.||.+|+++++++++.++.. ....++++.+++.++..+.+++.|+..|
T Consensus 397 ~~~~~~~~~~~~~l~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~-----~~~~~~l~~~l~~l~~~l~~~~~v~~~a 470 (876)
T 1qgr_A 397 PEPSQLKPLVIQAMPTLIELM-KDPSVVVRDTAAWTVGRICELLPEA-----AINDVYLAPLLQCLIEGLSAEPRVASNV 470 (876)
T ss_dssp SCHHHHHHHHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHCGGG-----TSSTTTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHhCchh-----cccHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 743556788999999999999 9999999999999999999987521 1246899999999999999888999999
Q ss_pred HHHHHHHHhhccCC-------C-CCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHH
Q 006201 478 CGALYFLAQGFEDA-------I-SPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQL 549 (657)
Q Consensus 478 ~~al~~l~~~~~~~-------~-~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l 549 (657)
++++..+++.+++. . .....+.||++.+++.|+..+...+..+..+|..++++++.++...|....+|+..+
T Consensus 471 ~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l 550 (876)
T 1qgr_A 471 CWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKT 550 (876)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHH
Confidence 99999999876410 0 013458899999999999999875432357888999999999999999899999999
Q ss_pred HHHHHHHHHHHHh--hhcCChhHHHHHHHHHHHHHHHHHHHHHHhC-CCcchhhHhhHHHHHHHHHHHHHHcccC--Ccc
Q 006201 550 VPLIMMELHQTLE--AQKLSSDEREKQNEIQGLLCGCLQVIIQKLG-SSEQTKYVFMQYADQMMGLFLRVFAIRS--ATA 624 (657)
Q Consensus 550 ~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~i~~~l~~~l~~~~--~~v 624 (657)
+|.+++.+...+. ....+++++..+..++..++.+++.++..+| .. +.||++.+++.++..++... ..+
T Consensus 551 ~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~------~~~~~~~l~~~l~~~l~~~~~~~~v 624 (876)
T 1qgr_A 551 TLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQD------ALQISDVVMASLLRMFQSTAGSGGV 624 (876)
T ss_dssp HHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHH------HHTTHHHHHHHHHHHC-----CCHH
T ss_pred HHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhh------hhHHHHHHHHHHHHHHHhccCCCCc
Confidence 9999999987532 1122345555556788889999999999999 77 99999999999999998764 468
Q ss_pred hhhHHHHHHHHHHHhchhhhhccccc
Q 006201 625 HEEAMLAIGALAYATGLCHHRRCCWG 650 (657)
Q Consensus 625 ~~~~~~~l~~l~~~~g~~f~~y~~~~ 650 (657)
++.++.+++.++..+|.+|.||++..
T Consensus 625 ~~~a~~~l~~l~~~~~~~~~~~~~~~ 650 (876)
T 1qgr_A 625 QEDALMAVSTLVEVLGGEFLKYMEAF 650 (876)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGGHHHH
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999999999998753
No 4
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=100.00 E-value=1.3e-46 Score=429.13 Aligned_cols=592 Identities=14% Similarity=0.160 Sum_probs=444.0
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhc
Q 006201 3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRW 82 (657)
Q Consensus 3 ~~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~ 82 (657)
+++.++|.++.|||++.| |+++|++++++ |+|+..|++++.+++.+.++|++|+++|||.+.++|.... ..
T Consensus 5 ~~l~~~L~~~~spd~~~r--Ae~~L~~~~~~--p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~-----~~ 75 (960)
T 1wa5_C 5 ETVAKFLAESVIASTAKT--SERNLRQLETQ--DGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDEN-----GN 75 (960)
T ss_dssp HHHHHHHHHTTSGGGHHH--HHHHHHHHHTS--TTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSS-----SC
T ss_pred HHHHHHHHHhcCCCHHHH--HHHHHHHhhcC--CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcc-----cC
Confidence 478999999999999999 99999999776 9999999999988777899999999999999998775321 12
Q ss_pred ccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhc
Q 006201 83 LSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEV 162 (657)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~ 162 (657)
..++++.|..||+.+++.+.++++.+|++++.+++.|++.++| +.||++++.|.+.+++++...+.+++.++..+++.+
T Consensus 76 ~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~ 154 (960)
T 1wa5_C 76 HLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRW 154 (960)
T ss_dssp BSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCc-cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999888899999999999999999999 699999999999999988899999999999999976
Q ss_pred cccccc-------hhhHhHHHH----H---HHhccCCCCCC-------HHHHHHHHHHHHHHHhh-chhhcCChhhHHHH
Q 006201 163 SSDAVE-------QDHVNKILT----A---VVQGMNASESN-------NDVRLAATRALYNALGF-AQANFSNDMERDYI 220 (657)
Q Consensus 163 ~~~~l~-------~~~~~~l~~----~---l~~~l~~~~~~-------~~vr~~al~~l~~~~~~-~~~~~~~~~~~~~i 220 (657)
....-. ...+...++ . +.+.+.+...+ .+++..+++++..+..+ .+..+. .....+
T Consensus 155 ~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~--~~~~~~ 232 (960)
T 1wa5_C 155 RPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFE--DNIQVG 232 (960)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHH--HTHHHH
T ss_pred HHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHH--HHHHHH
Confidence 321110 001222222 2 23335531122 13334466666654321 111111 111334
Q ss_pred HHHHHhhccC------C---------cHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHh-----cCChHHHHHH
Q 006201 221 MRVVCEATLS------P---------EVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVR-----EDEEPVALQA 280 (657)
Q Consensus 221 l~~l~~~~~~------~---------~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~v~~~a 280 (657)
++.+...+.. . .+++++.+++++..+++.+++.+.+|++.+++.++..+. ..++.++..+
T Consensus 233 ~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a 312 (960)
T 1wa5_C 233 MGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKS 312 (960)
T ss_dssp HHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHH
T ss_pred HHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHH
Confidence 4444333211 0 146789999999999999999999999999999998775 3567899999
Q ss_pred HHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHH--hhhhhHH-HHHHHHhhhhcCccc--------------cCCCcc
Q 006201 281 IEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIK--HALPVLV-PLLLETLLKQEEDQD--------------QDEGAW 343 (657)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~l~-~~l~~~l~~~~~d~~--------------~d~~~~ 343 (657)
++||.++++.... +..++ ++++.++ +.++..|...++|.+ ++++.|
T Consensus 313 l~fl~~~~~~~~~-----------------~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~ 375 (960)
T 1wa5_C 313 LSFLTAVTRIPKY-----------------FEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTD 375 (960)
T ss_dssp HHHHHHHHTSHHH-----------------HGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----
T ss_pred HHHHHHHhCcHhH-----------------HHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCccccc
Confidence 9999998864321 12222 5667777 677777764333211 134567
Q ss_pred hHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhc------CcchhhHHHHHHHHHHhhcCCC-CC-cch------HHHHH
Q 006201 344 NIAMAGGTCLGLVARTVGDDIVPLVMPFVEENIT------KQEWRQREAATYAFGSILEGPS-PE-KLV------PLVNI 409 (657)
Q Consensus 344 ~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~------~~~~~~r~aal~~l~~i~~~~~-~~-~~~------~~~~~ 409 (657)
++|++|..+|+.++..+++.+++.+++++.+.+. +++|+.|+||++++|+++++.. .+ ... ...+-
T Consensus 376 s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~ 455 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDF 455 (960)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHH
T ss_pred CcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHH
Confidence 9999999999999999998899999999988776 6789999999999999986421 11 111 12222
Q ss_pred HHHHHHHHhcCCC---cHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHH
Q 006201 410 ALNFMLTALMQDP---NNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLA 485 (657)
Q Consensus 410 i~~~l~~~l~~d~---~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~ 485 (657)
+...++..+ +|+ ++.||.+|+|++|++++++. ++++..+++.+++.|.| ++.|+.+||.||.+|+
T Consensus 456 l~~~v~p~l-~~~~~~~p~vr~~a~~~lg~~~~~~~----------~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~ 524 (960)
T 1wa5_C 456 FTKEIAPDL-TSNNIPHIILRVDAIKYIYTFRNQLT----------KAQLIELMPILATFLQTDEYVVYTYAAITIEKIL 524 (960)
T ss_dssp HHHHTHHHH-HCSSCSCHHHHHHHHHHHHHTGGGSC----------HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHh-cCCCCCCceehHHHHHHHHHHHhhCC----------HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence 234566667 777 99999999999999999863 56899999999999987 6899999999999999
Q ss_pred hhcc-----CCCCCCCCCchhHHHHHHHHHHhhccccc--hhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Q 006201 486 QGFE-----DAISPSSPLTPFFQEIVQALLTVTHREDA--GESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELH 558 (657)
Q Consensus 486 ~~~~-----~~~~~~~~l~~~~~~i~~~L~~~l~~~~~--~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~ 558 (657)
+... .....+..+.||++.+++.|+.+++.... .+....+.++++++.++...++.+.||+..+++.+...+.
T Consensus 525 ~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~ 604 (960)
T 1wa5_C 525 TIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVT 604 (960)
T ss_dssp TCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHH
T ss_pred hcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 8532 00012456899999999999999987410 0111235799999999999999999999999999999988
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHcccCCcchhhHHHHHHHHHHH
Q 006201 559 QTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYA 638 (657)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~~~~l~~l~~~ 638 (657)
....+ .+++ .++..+++|++.+++..+++. +.++.+.+++.+...++....++.++++..++.+...
T Consensus 605 ~~~~~----~~~~----~~~~~~~e~l~~l~~~~~~~~-----~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 605 IMAKN----PSNP----RFTHYTFESIGAILNYTQRQN-----LPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp HHTTS----CCCH----HHHHHHHHHHHHHHHTSCGGG-----HHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred HHHhC----CCCc----HHHHHHHHHHHHHHhcCCcch-----HHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHh
Confidence 76432 2233 345678999999999866554 8889999999999999887778899999999999988
Q ss_pred hchhhhhccc
Q 006201 639 TGLCHHRRCC 648 (657)
Q Consensus 639 ~g~~f~~y~~ 648 (657)
. ..|.+|+.
T Consensus 672 ~-~~~~~~~~ 680 (960)
T 1wa5_C 672 S-ATIPESIK 680 (960)
T ss_dssp C-SSCCTTTG
T ss_pred c-cCCCHHHH
Confidence 7 66777665
No 5
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=100.00 E-value=7.3e-47 Score=398.70 Aligned_cols=456 Identities=42% Similarity=0.717 Sum_probs=386.2
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhc
Q 006201 3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRW 82 (657)
Q Consensus 3 ~~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~ 82 (657)
|+|.++|.++.+||+++|++|+++|+++++++.|+|+..|++++.+++.+..+|++|+++||+.++++|....+.....|
T Consensus 1 ~~l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~ 80 (462)
T 1ibr_B 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (462)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhh
Confidence 47999999999999999999999999998755699999999999986668999999999999999999987776666789
Q ss_pred ccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCC--ChhHHHHHHHHHHHHhh
Q 006201 83 LSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQL--PPHTKQATLETLGYICE 160 (657)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~~l~~l~~i~~ 160 (657)
..++++.+..||+.+++.+.++++.+ ++++.+++.|+..++|...||+++|.+.+.++++ ++..|++++.+|..+++
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (462)
T 1ibr_B 81 LAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (462)
T ss_dssp HTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888 9999999999999988569999999999999998 89999999999999999
Q ss_pred hccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHH
Q 006201 161 EVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAF 240 (657)
Q Consensus 161 ~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~ 240 (657)
.+.++.+ .++...+++.+.+.+.+.++++.||..|++++.+++.++...+......+.+++.+.....++++++|..++
T Consensus 160 ~~~~~~~-~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~ 238 (462)
T 1ibr_B 160 DIDPEQL-QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAAL 238 (462)
T ss_dssp HSCGGGT-GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred hCCchhh-HhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 8755555 677888999999999842227999999999999998877655543333456788888888888999999999
Q ss_pred HHHHHHHHHHHHhhHHhHH-HHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCC-CCCCCC-CchhhHHHhh
Q 006201 241 ECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGD-FSGDSD-IPCFYFIKHA 317 (657)
Q Consensus 241 ~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~ 317 (657)
++|..+++.+++.+.+|++ .+++.++..+++.++++|..++++|..+++............ .++.+. .....+++++
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (462)
T 1ibr_B 239 QNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA 318 (462)
T ss_dssp HHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHH
Confidence 9999999999999999999 999999999999999999999999999998753322111110 011110 1234567778
Q ss_pred hhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcC
Q 006201 318 LPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEG 397 (657)
Q Consensus 318 l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~ 397 (657)
++.++|.+++.+...++| +++++|++|.+|..+|+.++..+|+.+++.+++.+.+.+.+++|++|++|+.++|.++++
T Consensus 319 ~~~l~p~l~~~l~~~d~d--~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~ 396 (462)
T 1ibr_B 319 LQYLVPILTQTLTKQDEN--DDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG 396 (462)
T ss_dssp HHHHHHHHHHHTTCCCSS--CCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred hhhccHHHHHHHHhcccc--cccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 889999999988765443 334569999999999999999999889999999999999999999999999999999998
Q ss_pred CCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHcc
Q 006201 398 PSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK 468 (657)
Q Consensus 398 ~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~ 468 (657)
+.++.+.++++.++|.++..+ +|+++.||.+|+|+++++++.+++. ....++++.+++.+++.|+
T Consensus 397 ~~~~~~~~~l~~~~~~l~~~l-~d~~~~Vr~~a~~~l~~~~~~~~~~-----~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 397 PEPSQLKPLVIQAMPTLIELM-KDPSVVVRDTAAWTVGRICELLPEA-----AINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp SCTTTTCTTTTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHGGGG-----CCSTTTHHHHHHHHHCC--
T ss_pred CcHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhcccc-----cccHHHHHHHHHHHHHHhc
Confidence 755667778889999999999 9999999999999999999998631 1146899999999987764
No 6
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=1.5e-42 Score=398.25 Aligned_cols=598 Identities=14% Similarity=0.147 Sum_probs=452.7
Q ss_pred HHHHHHHH-hcCCChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhc
Q 006201 4 EVTQILLN-AQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRW 82 (657)
Q Consensus 4 ~l~~~l~~-~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~ 82 (657)
++.++++. ..++|++.|++|+++|++++++ |+++..+..++.+ +.+.++|++|+++||+.+++ .|
T Consensus 25 ~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~--p~~~~~~~~lL~~-~~~~~vr~~aa~~L~~~i~~-----------~w 90 (963)
T 2x19_B 25 NVEKALHQLYYDPNIENKNLAQKWLMQAQVS--PQAWHFSWQLLQP-DKVPEIQYFGASALHIKISR-----------YW 90 (963)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS--TTHHHHHHHHTST-TSCHHHHHHHHHHHHHHHHH-----------CG
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHh-----------CH
Confidence 57888888 4568999999999999999998 9999999998876 57899999999999999974 56
Q ss_pred ccCChHHHHHHHHHHHHhcCC---CChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcC-----CChhHHHHHHHH
Q 006201 83 LSLDSSVKAQIKSFILKTLSS---PAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQ-----LPPHTKQATLET 154 (657)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~---~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~-----~~~~~~~~~l~~ 154 (657)
..++++.+..||+.+++.+.+ .++.||++++.+++.|++.++| ..||++++.+.+.+++ +++..++.++.+
T Consensus 91 ~~l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p-~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~i 169 (963)
T 2x19_B 91 SDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMP-DAWPCAVADMVRLFQAEDSPVDGQGRCLALLEL 169 (963)
T ss_dssp GGSCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTT-TTSTTHHHHHHHHHCC------CHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCc-cccchHHHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 789999999999999998875 3589999999999999999999 5899999999999876 366678899999
Q ss_pred HHHHhhhccc------------cccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhc-----------
Q 006201 155 LGYICEEVSS------------DAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANF----------- 211 (657)
Q Consensus 155 l~~i~~~~~~------------~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~----------- 211 (657)
|..++++... +.+ ..+...+++.+.+.+.+.+....++..+++|+..++. +....
T Consensus 170 L~~l~ee~~~~~~~~~~r~~~~~~l-~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~ 247 (963)
T 2x19_B 170 LTVLPEEFQTSRLPQYRKGLVRTSL-AVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAF 247 (963)
T ss_dssp HHHHHHHHTTCCC---------CCS-GGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHH
T ss_pred HHhCHHHHhcccCcHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHH
Confidence 9999875411 122 3456777777777776432333577888888866543 11000
Q ss_pred ---CCh-----------------------hhHHHHHHHHHh-------hccCCcHHHHHHHHHHHHHHHHHHHHhhH---
Q 006201 212 ---SND-----------------------MERDYIMRVVCE-------ATLSPEVKIRQAAFECLVAISSTYYEKLA--- 255 (657)
Q Consensus 212 ---~~~-----------------------~~~~~il~~l~~-------~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--- 255 (657)
... .....+++.+.. .....+.+.....++.+..+++.++..+.
T Consensus 248 ~~l~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~ 327 (963)
T 2x19_B 248 AALQDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQV 327 (963)
T ss_dssp HHTTSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred HHhCCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCc
Confidence 000 000112222211 12234556667788888888877766554
Q ss_pred ---HhHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHH
Q 006201 256 ---PYIQDIFNITAKAVRE-----DEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLE 327 (657)
Q Consensus 256 ---~~~~~l~~~~~~~~~~-----~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 327 (657)
+++..+++.++....+ .+++++..+++||..+++.......+. .-......++++.++++.++.
T Consensus 328 ~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~--------~~~~~~~~~~~l~~l~~~ll~ 399 (963)
T 2x19_B 328 EHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEK--------QAVYQQVYRPVYFQLVDVLLH 399 (963)
T ss_dssp GGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhh--------hHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777776664 467789999999999998432110000 001234567888899999999
Q ss_pred HhhhhcCcc-----ccCCCcc-hHhhhHHHHHHHHHhhcCCCchhchHHHHHhhh----cCcchhhHHHHHHHHHHhhcC
Q 006201 328 TLLKQEEDQ-----DQDEGAW-NIAMAGGTCLGLVARTVGDDIVPLVMPFVEENI----TKQEWRQREAATYAFGSILEG 397 (657)
Q Consensus 328 ~l~~~~~d~-----~~d~~~~-~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l----~~~~~~~r~aal~~l~~i~~~ 397 (657)
.+.++++++ ++|++.| +.|+++.++|..++...|+.+++.+.+.+.+.+ .+.+|+.|+++++++|+++++
T Consensus 400 ~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~ 479 (963)
T 2x19_B 400 KAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAET 479 (963)
T ss_dssp HHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTS
T ss_pred HHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhh
Confidence 887544321 1112234 568899999999999999889999999998887 677899999999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHcccchHHHHHH
Q 006201 398 PSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKA 477 (657)
Q Consensus 398 ~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a 477 (657)
+. ....++++.+++.+. .+ .++++.||.+++|++|++++++. ...++++.+++.++..|++ +.|+..|
T Consensus 480 ~~-~~~~~~l~~l~~~l~-~l-~~~~~~vr~~~~~~l~~~~~~l~--------~~~~~l~~vl~~l~~~l~~-~~V~~~A 547 (963)
T 2x19_B 480 ID-VNYSDVVPGLIGLIP-RI-SISNVQLADTVMFTIGALSEWLA--------DHPVMINSVLPLVLHALGN-PELSVSS 547 (963)
T ss_dssp CC-SSCCSHHHHHHHHGG-GS-CCCSHHHHHHHHHHHHHTHHHHH--------HCHHHHTTTHHHHHHHTTC-GGGHHHH
T ss_pred cC-chhhHHHHHHHHHHH-hC-CCCcHHHHHHHHHHHHHHHHHHH--------hCHHHHHHHHHHHHHHhCC-chHHHHH
Confidence 84 445567788888543 45 56799999999999999999986 2357899999999999975 8999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHHH
Q 006201 478 CGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCST-DETAPMVMQLVPLIMME 556 (657)
Q Consensus 478 ~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~-~~~~~~~~~l~~~l~~~ 556 (657)
|.++.++++.+. ..+.||++.+++.+..++...+. +...+..++++++.++...+ +.+.+|+..+++++.+.
T Consensus 548 ~~al~~l~~~~~------~~l~p~~~~il~~l~~~l~~~~~-~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~ 620 (963)
T 2x19_B 548 VSTLKKICRECK------YDLPPYAANIVAVSQDVLMKQIH-KTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQ 620 (963)
T ss_dssp HHHHHHHHHHTG------GGCTTTHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH------HHHHhhHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 999999998764 45889999999999999876432 35677889999999999887 67899999999999999
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcc----------------hhhHhhHHHHHHHHHHHHHHcc-
Q 006201 557 LHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQ----------------TKYVFMQYADQMMGLFLRVFAI- 619 (657)
Q Consensus 557 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~----------------~~~~~~~~~~~i~~~l~~~l~~- 619 (657)
|++...++ .+++.+ ..+...+++++.+++.++...+ ++..+.++.+.+++.+...++.
T Consensus 621 l~~~~~~~-~~~~~~----~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 695 (963)
T 2x19_B 621 LEKLAEEI-PNPSNK----LAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKW 695 (963)
T ss_dssp HHHHHSSC-SCHHHH----HHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCC-CCHHHH----HHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhc
Confidence 98865432 122222 2344689999999999885311 1223667888888888888765
Q ss_pred -cCCcchhhHHHHHHHHHHHhchhhhhccccc
Q 006201 620 -RSATAHEEAMLAIGALAYATGLCHHRRCCWG 650 (657)
Q Consensus 620 -~~~~v~~~~~~~l~~l~~~~g~~f~~y~~~~ 650 (657)
.+.++.+.+..+++.++..+|.+|.||++-.
T Consensus 696 ~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~ 727 (963)
T 2x19_B 696 LNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQL 727 (963)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHH
T ss_pred cCchHHHHHHHHHHHHHHHhhcccccccHHHH
Confidence 3567899999999999999999999998743
No 7
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=1.8e-43 Score=405.34 Aligned_cols=598 Identities=14% Similarity=0.152 Sum_probs=430.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcc
Q 006201 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWL 83 (657)
Q Consensus 4 ~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~ 83 (657)
++.+++..+++||++.|++|+++|++++++ |+++..+..++.. +.+.++|++|+++|++.+++ .|.
T Consensus 8 ~l~~~l~~~~~~d~~~r~~A~~~L~~~~~~--p~~w~~~~~lL~~-~~~~~vr~~aa~~L~~~i~~-----------~w~ 73 (971)
T 2x1g_F 8 RLEEAVVSFYRSNSQNQAITHEWLTDAEAS--PQAWQFSWQLMQL-GKSQEVQFFGAITLHSKLMK-----------HWH 73 (971)
T ss_dssp ---CTHHHHHTSTTTC----CHHHHHTTTS--THHHHHHHHHTCT-TSCHHHHHHHHHHHHHHHHH-----------CGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--HHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHc-----------cHh
Confidence 577888889999999999999999999988 9999999999976 57899999999999999974 567
Q ss_pred cCChHHHHHHHHHHHHhcCC---CChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCC------ChhHHHHHHHH
Q 006201 84 SLDSSVKAQIKSFILKTLSS---PAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQL------PPHTKQATLET 154 (657)
Q Consensus 84 ~l~~~~~~~i~~~ll~~l~~---~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~------~~~~~~~~l~~ 154 (657)
.++++.+..+|+.+++.+.+ .++.||++++.+++.|++.++| .||++++.+.+.++++ ++..++.++.+
T Consensus 74 ~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~i 151 (971)
T 2x1g_F 74 EVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG--EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEV 151 (971)
T ss_dssp GCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC--C------HHHHHHHHTC----CHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc--cccHHHHHHHHHHhccccccCCCHHHHHHHHHH
Confidence 89999999999999998865 2589999999999999999998 9999999999999875 56788999999
Q ss_pred HHHHhhhcc-c----------cccchhhHhHHHHHHHhccCCCCCC------HHHHHHHHHHHHHHHhh--chhh-----
Q 006201 155 LGYICEEVS-S----------DAVEQDHVNKILTAVVQGMNASESN------NDVRLAATRALYNALGF--AQAN----- 210 (657)
Q Consensus 155 l~~i~~~~~-~----------~~l~~~~~~~l~~~l~~~l~~~~~~------~~vr~~al~~l~~~~~~--~~~~----- 210 (657)
|..+++++. . +.+ ..+...+++.+.+.+...+.. ..++..+++|+..++.+ ++..
T Consensus 152 L~~l~EEi~~~~~~~~r~~~~~~l-~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~l 230 (971)
T 2x1g_F 152 LTAIPEEAQVIHTSVKRVVLRAEI-AKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTI 230 (971)
T ss_dssp HHHHHHHHHHCCCSSCHHHHHHHH-HTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHH
T ss_pred HHHhHHHHhccCcHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCccccccH
Confidence 999887531 1 111 234556666666665421111 27899999999987762 2211
Q ss_pred ----c--------------------CChhh-----------------------HHHHHHHHHh-------hccCCc---H
Q 006201 211 ----F--------------------SNDME-----------------------RDYIMRVVCE-------ATLSPE---V 233 (657)
Q Consensus 211 ----~--------------------~~~~~-----------------------~~~il~~l~~-------~~~~~~---~ 233 (657)
+ ..+.. ...+++.+.. ...+.+ .
T Consensus 231 l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~ 310 (971)
T 2x1g_F 231 TAVLLEVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNE 310 (971)
T ss_dssp HHHHHHHHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCS
T ss_pred HHHHHhhhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccch
Confidence 0 00000 0011111111 113334 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhH-----------HhHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHHhHHHHHhhhh
Q 006201 234 KIRQAAFECLVAISSTYYEKLA-----------PYIQDIFNITAKAVRE-----DEEPVALQAIEFWSSVCDEEIDILEE 297 (657)
Q Consensus 234 ~~~~~~~~~l~~l~~~~~~~~~-----------~~~~~l~~~~~~~~~~-----~~~~v~~~a~~~~~~l~~~~~~~~~~ 297 (657)
+....+++.+..+++.+.+.+. +++..+++.++....+ .+++++..+++||.++++...+....
T Consensus 311 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~ 390 (971)
T 2x1g_F 311 DIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSND 390 (971)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccc
Confidence 6777788888888877665554 4566777777776543 47889999999999998743221100
Q ss_pred cCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccc------cCCCcchHhhhHHHHHHHHHhhcCCCchhchHHH
Q 006201 298 YGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQD------QDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPF 371 (657)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~------~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~ 371 (657)
++ ........++++..+++.++..+.++++++. ++++..+.|+++.++|..++...|+.+++.+++.
T Consensus 391 ------~~-~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~ 463 (971)
T 2x1g_F 391 ------EQ-KHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAM 463 (971)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred ------cc-hHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 00 0023456678888999999998865443211 0011126889999999999999998899999999
Q ss_pred HHhhhcC-----cchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhccC
Q 006201 372 VEENITK-----QEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQ--DPNNHVKDTTAWTLGRMFEFLHGS 444 (657)
Q Consensus 372 l~~~l~~-----~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~--d~~~~vr~~a~~~l~~l~~~~~~~ 444 (657)
+.+.+.+ ++|+.|++++++++++++++. ....++++.+++ ++..+ . |+++.||.+++|++|++++++.
T Consensus 464 l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~-~~~~~~l~~l~~-~l~~l-~~~d~~~~vr~~a~~~l~~~~~~l~-- 538 (971)
T 2x1g_F 464 LDEAIADLQRHPTHWTKLEACIYSFQSVAEHFG-GEEKRQIPRLMR-VLAEI-PYEKLNVKLLGTALETMGSYCNWLM-- 538 (971)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-------CHHHHHHH-HHHHS-CTTTSCHHHHHHHHHHHHHTHHHHC--
T ss_pred HHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHH-HHHhc-CccccCHHHHHHHHHHHHHHHHHHh--
Confidence 9888765 689999999999999999984 444567888888 55666 5 5799999999999999999986
Q ss_pred cCCCccCCcccHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHH
Q 006201 445 TLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLR 524 (657)
Q Consensus 445 ~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~ 524 (657)
...+++..+++.++..+ + ++|+..||.++.++++.+. ..+.||++.+++.+..++++... +...+
T Consensus 539 ------~~~~~l~~vl~~l~~~l-~-~~v~~~A~~al~~l~~~~~------~~l~p~~~~ll~~l~~~l~~~~~-~~~~~ 603 (971)
T 2x1g_F 539 ------ENPAYIPPAINLLVRGL-N-SSMSAQATLGLKELCRDCQ------LQLKPYADPLLNACHASLNTGRM-KNSDS 603 (971)
T ss_dssp ----------CHHHHHHHHHHHH-H-SSCHHHHHHHHHHHHHHCH------HHHHHHHHHHHHHHHHHHHSTTS-CHHHH
T ss_pred ------cCHHHHHHHHHHHHHHh-C-hHHHHHHHHHHHHHHHHHH------HhccccHHHHHHHHHHHHcCCCC-ChHHH
Confidence 23589999999999999 4 8899999999999998764 45889999999999999987433 35678
Q ss_pred HHHHHHHHHHHHhcc-cccHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcc--h---
Q 006201 525 TAAYETLNEVVRCST-DETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQ--T--- 598 (657)
Q Consensus 525 ~~~~~al~~l~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--~--- 598 (657)
..++++++.++...+ +...+|+..+++++++.|++..+++..++++.. .+ ...+++++.+++.++...+ .
T Consensus 604 ~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~---~~-~~~l~~L~~~~~~l~~~~~~~~~~~ 679 (971)
T 2x1g_F 604 VRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARI---RT-IFRLNMISTLFSSLNTDVDEQATDQ 679 (971)
T ss_dssp HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHH---HH-HHHHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHH---HH-HHHHHHHHHHHhhcCCCcCcccccc
Confidence 899999999999877 567899999999999999887654321222221 12 2367788888887764200 0
Q ss_pred --hhHhhHHHHHHHHHHHHHHccc--CCcchhhHHHHHHHHHHHhchhhhhcccc
Q 006201 599 --KYVFMQYADQMMGLFLRVFAIR--SATAHEEAMLAIGALAYATGLCHHRRCCW 649 (657)
Q Consensus 599 --~~~~~~~~~~i~~~l~~~l~~~--~~~v~~~~~~~l~~l~~~~g~~f~~y~~~ 649 (657)
...+.+|.+.+++.+...+... +..+.+.+..++++++.++|.+|.||++.
T Consensus 680 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~ 734 (971)
T 2x1g_F 680 PIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQD 734 (971)
T ss_dssp ----CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHH
T ss_pred cCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHH
Confidence 1127889999999999888653 55799999999999999999999999774
No 8
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=2.5e-41 Score=388.66 Aligned_cols=566 Identities=16% Similarity=0.233 Sum_probs=423.7
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhc
Q 006201 3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRW 82 (657)
Q Consensus 3 ~~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~ 82 (657)
+++.++|+.+++|+++.|++|+++|++++++ |+++..+..++.+ +.+.++|++|+++||+.+++ .|
T Consensus 16 ~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~--p~~~~~l~~iL~~-s~~~~vr~~aa~~Lk~~i~~-----------~W 81 (1049)
T 3m1i_C 16 ALLDQVVSTFYQGSGVQQKQAQEILTKFQDN--PDAWQKADQILQF-STNPQSKFIALSILDKLITR-----------KW 81 (1049)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS--TTGGGGHHHHHHH-CSCHHHHHHHHHHHHHHHHH-----------TG
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHhC--chHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHh-----------hC
Confidence 4688999999999999999999999999988 8999999999976 56999999999999999974 56
Q ss_pred ccCChHHHHHHHHHHHHhcCCC---------ChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHH
Q 006201 83 LSLDSSVKAQIKSFILKTLSSP---------AHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLE 153 (657)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~~---------~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~ 153 (657)
..++++.+..||+.+++.+.+. ++.+|++++.+++.|++.++| +.||++++.+.+.++ .++..++.++.
T Consensus 82 ~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~ 159 (1049)
T 3m1i_C 82 KLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMI 159 (1049)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHc-cChHHHHHHHH
Confidence 7899999999999999998753 378999999999999999999 699999999999997 56667888899
Q ss_pred HHHHHhhhcc---c------------cccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhc--CC---
Q 006201 154 TLGYICEEVS---S------------DAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANF--SN--- 213 (657)
Q Consensus 154 ~l~~i~~~~~---~------------~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~--~~--- 213 (657)
+|..+++.+. . +.+ ..++..+++.+.+.+.+ ..+..++..+++|+.+++.|++... ..
T Consensus 160 ~L~~l~eev~~~~~~~~~~~r~~~lk~~l-~~~~~~i~~~~~~~l~~-~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll 237 (1049)
T 3m1i_C 160 VLKLLSEEVFDFSAEQMTQAKALHLKNSM-SKEFEQIFKLCFQVLEQ-GSSSSLIVATLESLLRYLHWIPYRYIYETNIL 237 (1049)
T ss_dssp HHHHHHHHHHTSCTTTSCHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHH
T ss_pred HHHHHHHHHHHhcchhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHH
Confidence 9998887652 1 112 23456677777777764 3567899999999998887765211 10
Q ss_pred ----------hhhHHH------------------------------HHHHHHh--------------hccCCcHHHHHHH
Q 006201 214 ----------DMERDY------------------------------IMRVVCE--------------ATLSPEVKIRQAA 239 (657)
Q Consensus 214 ----------~~~~~~------------------------------il~~l~~--------------~~~~~~~~~~~~~ 239 (657)
+..+.. +++.+.. ...+.+.+.....
T Consensus 238 ~~l~~~~l~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l 317 (1049)
T 3m1i_C 238 ELLSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDL 317 (1049)
T ss_dssp HHHHTHHHHSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHH
T ss_pred HHHHHHhCCCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHH
Confidence 000000 0110000 0012234444555
Q ss_pred HHHHHHHHHHHHHh------hHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhH
Q 006201 240 FECLVAISSTYYEK------LAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYF 313 (657)
Q Consensus 240 ~~~l~~l~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (657)
++.+..+++.+.+. +.+++..+++.++......+++++..+++||.++++.... .+ .....
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~--~~-----------~~~~~ 384 (1049)
T 3m1i_C 318 AMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFY--EP-----------LKKHI 384 (1049)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHH--ST-----------TCGGG
T ss_pred HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHh--ch-----------hHHHH
Confidence 55565555544433 2445666778777777778889999999999999985211 00 12345
Q ss_pred HHhhhhhHHHHHHHHhhhhcCcc-----c--------cCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcC--
Q 006201 314 IKHALPVLVPLLLETLLKQEEDQ-----D--------QDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITK-- 378 (657)
Q Consensus 314 ~~~~l~~l~~~l~~~l~~~~~d~-----~--------~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~-- 378 (657)
.++++.++++.++..|.+++|++ + +|+|+|+.|+++.++|+.++...+..+++.+.+.+.+.+.+
T Consensus 385 ~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~ 464 (1049)
T 3m1i_C 385 YEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSE 464 (1049)
T ss_dssp GHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCC
Confidence 56888899999999987754321 0 12345788999999999999888888899999999888764
Q ss_pred cchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcC-----CCcHHHHHHHHHHHHHHHhhhccCcCCCccCCc
Q 006201 379 QEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQ-----DPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQ 453 (657)
Q Consensus 379 ~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 453 (657)
.+|+.|+++++++|++++++....-.++++.+++.+.... . |+++.||.+++|++|++++++. ..+
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~-~~~~~~~~~~~v~~~~~~~lgry~~~~~--------~~~ 535 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLT-VKKRGKDNKAVVASDIMYVVGQYPRFLK--------AHW 535 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHT-TSSCSHHHHHHHHHHHHHHHHHCHHHHH--------HCH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHH-hhhccccchHHHHHHHHHHHHHHHHHHH--------hHH
Confidence 6799999999999999987642222345788888877643 2 4688888899999999999986 346
Q ss_pred ccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCC--CCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHH
Q 006201 454 GNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDA--ISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYET 530 (657)
Q Consensus 454 ~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~--~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~a 530 (657)
+++..+++.++..+.+ +++|+..||.++.++++.+... ...+..+.||++.+++.+..++...+. .. ...++++
T Consensus 536 ~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~--~~-~~~~~ea 612 (1049)
T 3m1i_C 536 NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQP--QQ-VHTFYKA 612 (1049)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCH--HH-HHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCH--HH-HHHHHHH
Confidence 8999999999999987 7999999999999999876421 012344569999999999999987652 23 3578999
Q ss_pred HHHHHHhccc--ccHHHHHHHHHHHHHHHHHHHhhhcCChh---HHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHH
Q 006201 531 LNEVVRCSTD--ETAPMVMQLVPLIMMELHQTLEAQKLSSD---EREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQY 605 (657)
Q Consensus 531 l~~l~~~~~~--~~~~~~~~l~~~l~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 605 (657)
++.++...+. ...+|+..+++.+.+.|++.......+.+ +.+....+ ..+++|++.+++++|+. |.|+
T Consensus 613 i~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l-~~~l~~~~~~~~~l~~~------f~p~ 685 (1049)
T 3m1i_C 613 CGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKII-ANIIKTNVAVCTSMGAD------FYPQ 685 (1049)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHH-HHHHHHHHHHHHHHGGG------GHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHH-HHHHHHHHHHHHHhhHH------HHHH
Confidence 9999999983 47889999999999999887643211111 11111223 35788999999999999 9999
Q ss_pred HHHHHHHHHHHHc
Q 006201 606 ADQMMGLFLRVFA 618 (657)
Q Consensus 606 ~~~i~~~l~~~l~ 618 (657)
+..++..++..+.
T Consensus 686 ~~~i~~~~l~~~~ 698 (1049)
T 3m1i_C 686 LGHIYYNMLQLYR 698 (1049)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9888877665443
No 9
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=1.4e-39 Score=364.58 Aligned_cols=562 Identities=16% Similarity=0.251 Sum_probs=414.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcc
Q 006201 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWL 83 (657)
Q Consensus 4 ~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~ 83 (657)
.+.+++..+++|+++.|++|+++|++++++ |+++..+..++.+ +.++++|++|+++|++.+++ .|.
T Consensus 17 ~Le~av~~ly~p~~~~r~~A~~~L~~~q~s--p~aw~~~~~iL~~-s~~~~vR~faa~~Lk~~I~~-----------~W~ 82 (1023)
T 4hat_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQDN--PDAWQKADQILQF-STNPQSKFIALSILDKLITR-----------KWK 82 (1023)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHC--TTGGGGHHHHHHH-CCCHHHHHHHHHHHHHHHHH-----------HGG
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHcC--ccHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHh-----------hhh
Confidence 678899999999988999999999999998 8888888888875 46889999999999999984 567
Q ss_pred cCChHHHHHHHHHHHHhcCC----C-----ChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHH
Q 006201 84 SLDSSVKAQIKSFILKTLSS----P-----AHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLET 154 (657)
Q Consensus 84 ~l~~~~~~~i~~~ll~~l~~----~-----~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~ 154 (657)
.++++.+..||+.+++.+.. + .+.+++++|.+++.|++.++| ..||++++.+.+.+++ ++.....++.+
T Consensus 83 ~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p-~~Wp~~l~dL~~~l~~-~~~~~~~~L~i 160 (1023)
T 4hat_C 83 LLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSSS-SVNVCENNMIV 160 (1023)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHTTT-CHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhCh-hhchHHHHHHHHHhcC-CHHHHHHHHHH
Confidence 89999999999999998753 1 367889999999999999999 5999999999999865 45567888999
Q ss_pred HHHHhhhcc---ccccc-----------hhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHH
Q 006201 155 LGYICEEVS---SDAVE-----------QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYI 220 (657)
Q Consensus 155 l~~i~~~~~---~~~l~-----------~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i 220 (657)
|..+.+++. .+.++ ...+..+++.+.+.+.. ..++++...+++|+.+++.|++-... ....+
T Consensus 161 L~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~-~~~~~l~~~~L~~l~s~l~WI~i~~i---~~~~l 236 (1023)
T 4hat_C 161 LKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQ-GASSSLIVATLESLLRYLHWIPYRYI---YETNI 236 (1023)
T ss_dssp HHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTTSCTHHH---HSSSH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhCCHHHh---cchhH
Confidence 998888741 12221 23456667777777764 45678888999999999888652110 00123
Q ss_pred HHHHH-hhccCCcHHHHHHHHHHHHHHHH---------------------------------------------------
Q 006201 221 MRVVC-EATLSPEVKIRQAAFECLVAISS--------------------------------------------------- 248 (657)
Q Consensus 221 l~~l~-~~~~~~~~~~~~~~~~~l~~l~~--------------------------------------------------- 248 (657)
++.++ .++ .++++|..+++||..++.
T Consensus 237 l~~l~~~~L--~~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~ 314 (1023)
T 4hat_C 237 LELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFL 314 (1023)
T ss_dssp HHHHHTHHH--HSHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHH
T ss_pred HHHHHHHHc--CCHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHH
Confidence 44443 333 234455555555555543
Q ss_pred ------------HHHHhhH--HhHHHH----HHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCch
Q 006201 249 ------------TYYEKLA--PYIQDI----FNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPC 310 (657)
Q Consensus 249 ------------~~~~~~~--~~~~~l----~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 310 (657)
.+...+. +....+ +..++.....++.++...+++||..+++... .. + ..
T Consensus 315 ~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~------~e-----~--~~ 381 (1023)
T 4hat_C 315 QDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLF------YE-----P--LK 381 (1023)
T ss_dssp HHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT------TS-----T--TT
T ss_pred HHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHH------hc-----h--HH
Confidence 2222111 111111 1122333334566777888899999887421 10 0 12
Q ss_pred hhHHHhhhhhHHHHHHHHhhhhcCcc--ccCCCcc-----------hHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhc
Q 006201 311 FYFIKHALPVLVPLLLETLLKQEEDQ--DQDEGAW-----------NIAMAGGTCLGLVARTVGDDIVPLVMPFVEENIT 377 (657)
Q Consensus 311 ~~~~~~~l~~l~~~l~~~l~~~~~d~--~~d~~~~-----------~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~ 377 (657)
....++++.++++.++..|.+++++. ++|+++| ..-+...++|..++...+.++++.+.+.+.+.+.
T Consensus 382 ~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~ 461 (1023)
T 4hat_C 382 KHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQID 461 (1023)
T ss_dssp GGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhc
Confidence 34567888899999999999887320 0111112 2222334888888888888889999999988776
Q ss_pred C--cchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcC-----CCcHHHHHHHHHHHHHHHhhhccCcCCCcc
Q 006201 378 K--QEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQ-----DPNNHVKDTTAWTLGRMFEFLHGSTLETPI 450 (657)
Q Consensus 378 ~--~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 450 (657)
+ .+|+.|+|+++|+|+|++++..+...++++.+++.++..+ . |++++||.+++|++|++++|+.
T Consensus 462 ~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~-~~~~~~d~k~~v~~t~~~~lGry~~wl~-------- 532 (1023)
T 4hat_C 462 GSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLC-VKKRGKDNKAVVASDIMYVVGQYPRFLK-------- 532 (1023)
T ss_dssp STTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHH-HHCCSHHHHHHHHHHHHHHHHTCHHHHH--------
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhh-hccccCcchHHHHHHHHHHHHHHHHHHh--------
Confidence 4 5799999999999999998754456789999999999877 5 5778899999999999999986
Q ss_pred CCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCC--CCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHH
Q 006201 451 INQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDA--ISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAA 527 (657)
Q Consensus 451 ~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~--~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~ 527 (657)
..+.+++.+++.+++++.+ +++|+..||+++.++|+.+... ...+....||++.+++.+...+...+ ...+..+
T Consensus 533 ~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~---~~~~~~l 609 (1023)
T 4hat_C 533 AHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQ---PQQVHTF 609 (1023)
T ss_dssp HCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSC---HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCC---HHHHHHH
Confidence 4678999999999999986 6899999999999999987531 01234567999999999999987654 3444589
Q ss_pred HHHHHHHHHhcccc--cHHHHHHHHHHHHHHHHHHHhhhcCCh---hHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHh
Q 006201 528 YETLNEVVRCSTDE--TAPMVMQLVPLIMMELHQTLEAQKLSS---DEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVF 602 (657)
Q Consensus 528 ~~al~~l~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 602 (657)
+++++.+++..+.. ...++..+++.+...|++.......+. .+.+....+ ..+++|++.++.++|.. |
T Consensus 610 yeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l-~~il~~~~~v~~~lg~~------f 682 (1023)
T 4hat_C 610 YKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKII-ANIIKTNVAVCTSMGAD------F 682 (1023)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHH-HHHHHHHHHHHHHHGGG------G
T ss_pred HHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHH-HHHHHHHHHHHHHhcHH------H
Confidence 99999999999864 455899999999999998764211110 011111123 35889999999999999 9
Q ss_pred hHHHHHHHHHHHHHHcc
Q 006201 603 MQYADQMMGLFLRVFAI 619 (657)
Q Consensus 603 ~~~~~~i~~~l~~~l~~ 619 (657)
.|++.++++.+++.++.
T Consensus 683 ~~~~~~i~~~~l~~y~~ 699 (1023)
T 4hat_C 683 YPQLGHIYYNMLQLYRA 699 (1023)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999877654
No 10
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=1.4e-38 Score=356.59 Aligned_cols=598 Identities=11% Similarity=0.088 Sum_probs=426.3
Q ss_pred hHHHHHHHHhcCC--ChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhcCCC-ChhHHHHHHHHHhhhcccchhhhHHHhh
Q 006201 3 AEVTQILLNAQSV--DGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEK-PVESRKLAGLILKNALDAKEQHRKFELV 79 (657)
Q Consensus 3 ~~l~~~l~~~~s~--d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~-~~~~r~~a~~~l~~~i~~~~~~~~~~~~ 79 (657)
+++.++++.+++| |++.|++|+++|++++++ |+++..+..++.++.. ++++|++|+.+|++.++
T Consensus 6 ~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~s--p~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~----------- 72 (980)
T 3ibv_A 6 QDVENAVEAALDPSVGPIIKQQATDFIGSLRSS--STGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR----------- 72 (980)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS--TTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcC--hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-----------
Confidence 4688999878777 689999999999999998 8999999999987443 89999999999999875
Q ss_pred hhcccCChH----HHHHHHHHHHHhcCC-----CChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCCh-hHHH
Q 006201 80 QRWLSLDSS----VKAQIKSFILKTLSS-----PAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPP-HTKQ 149 (657)
Q Consensus 80 ~~~~~l~~~----~~~~i~~~ll~~l~~-----~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~-~~~~ 149 (657)
.++++ .+..+|+.+++.+.. .+..+|++++.+++.++..++| ..||++++.+++.+++++. ....
T Consensus 73 ----~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p-~~Wp~~i~~l~~~~~~~~~~~~~~ 147 (980)
T 3ibv_A 73 ----EWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP-SNWNDFFASLQGVIAASSQSEFSN 147 (980)
T ss_dssp ----HCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHHHHCCHHHHH
T ss_pred ----hCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc-ccCchHHHHHHHHhcCCChhHHHH
Confidence 36778 899999999998763 3579999999999999999999 6999999999999986554 3455
Q ss_pred HHHHHHHHHhhhccccccc----------------hhh-HhHHHHHHHhccCC--CCCCHHHHHHHHHHHHHHHhhchhh
Q 006201 150 ATLETLGYICEEVSSDAVE----------------QDH-VNKILTAVVQGMNA--SESNNDVRLAATRALYNALGFAQAN 210 (657)
Q Consensus 150 ~~l~~l~~i~~~~~~~~l~----------------~~~-~~~l~~~l~~~l~~--~~~~~~vr~~al~~l~~~~~~~~~~ 210 (657)
..+++|..+.+++....+. ..+ +..+++.+.+.+.. ...+++++..+++|+.+++.|++..
T Consensus 148 ~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~ 227 (980)
T 3ibv_A 148 FYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININ 227 (980)
T ss_dssp HHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHH
T ss_pred HHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHH
Confidence 6777777776765211110 011 23344544444431 0357789999999999999886532
Q ss_pred cCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHH-------------------------------------------
Q 006201 211 FSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAIS------------------------------------------- 247 (657)
Q Consensus 211 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~------------------------------------------- 247 (657)
... ...+++.++..+. ++++|..+++||..++
T Consensus 228 ~i~---~~~ll~~l~~~L~--~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~ 302 (980)
T 3ibv_A 228 LIV---NEPCMNLLYSFLQ--IEELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLIN 302 (980)
T ss_dssp HHH---CHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHH
T ss_pred hhh---cchHHHHHHHHcC--ChHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 210 1344554444443 2344444444444433
Q ss_pred ---HHHHHh--------------hHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCch
Q 006201 248 ---STYYEK--------------LAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPC 310 (657)
Q Consensus 248 ---~~~~~~--------------~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 310 (657)
+..... ..+++..+++.++..+.++++++...+++||..+.+........ . +.
T Consensus 303 ~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~--------~--~~ 372 (980)
T 3ibv_A 303 AQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSS--------K--EL 372 (980)
T ss_dssp HHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTS--------C--CC
T ss_pred HHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhcccc--------c--cc
Confidence 221111 11445567788888888888999999999999988653211000 0 12
Q ss_pred hhHHHhhhhhHHHHHHHHhhhhcCccccC----C--Ccc-hHhhhHHHHHHHHHhhcCCCchh----chHHHHHhhhc--
Q 006201 311 FYFIKHALPVLVPLLLETLLKQEEDQDQD----E--GAW-NIAMAGGTCLGLVARTVGDDIVP----LVMPFVEENIT-- 377 (657)
Q Consensus 311 ~~~~~~~l~~l~~~l~~~l~~~~~d~~~d----~--~~~-~~r~~a~~~L~~l~~~~~~~~~~----~l~~~l~~~l~-- 377 (657)
....++++.++++.++++|.++++++.++ + +.+ ..|+.....++.++...++.+++ .+.+.+.+.+.
T Consensus 373 ~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~ 452 (980)
T 3ibv_A 373 SASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLS 452 (980)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred cHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhccc
Confidence 24567888999999999999876532111 1 112 57776664444444444566677 66677766663
Q ss_pred -CcchhhHHHHHHHHHHhhcCCCCCc-----chHHHHHHHHHHHHHh----cCCCcHHHHHHHHHHHHHHHhhhccCcCC
Q 006201 378 -KQEWRQREAATYAFGSILEGPSPEK-----LVPLVNIALNFMLTAL----MQDPNNHVKDTTAWTLGRMFEFLHGSTLE 447 (657)
Q Consensus 378 -~~~~~~r~aal~~l~~i~~~~~~~~-----~~~~~~~i~~~l~~~l----~~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 447 (657)
+.+|+.+||++++++++++++.... ..+.++.+++.+...+ .+++||.||.++++++|++++|+.
T Consensus 453 ~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~----- 527 (980)
T 3ibv_A 453 PENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFD----- 527 (980)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGG-----
T ss_pred CCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHh-----
Confidence 4579999999999999999984211 1133445566666654 138999999999999999999996
Q ss_pred CccCCcccHHHHHHHHHH--Hccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccc----cchh
Q 006201 448 TPIINQGNCQQIISVLLQ--SMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHRE----DAGE 520 (657)
Q Consensus 448 ~~~~~~~~~~~il~~l~~--~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~----~~~~ 520 (657)
..+++++.+++.++. ++.+ +++|+.+|+.++.+||+.+ +..+.||++.++..+..++... +..+
T Consensus 528 ---~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~------~~~L~~~~~~il~~l~~lL~~~~~~~~~~~ 598 (980)
T 3ibv_A 528 ---YESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSI------KKQVVNYTESSLAMLGDLLNISVSPVTDMD 598 (980)
T ss_dssp ---TCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHT------TTTCSSSHHHHHHHTTGGGCCCCCCCCC--
T ss_pred ---cCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHh------hHHhhhHHHHHHHHHHHhhcCcCCCCCccc
Confidence 457899999999999 8876 6899999999999999986 3568899999999998877631 1000
Q ss_pred --------------hhHHHHHHHHHHHHHHhccc---ccHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHH
Q 006201 521 --------------SRLRTAAYETLNEVVRCSTD---ETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCG 583 (657)
Q Consensus 521 --------------~~~~~~~~~al~~l~~~~~~---~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (657)
.+-+..+++++|.++...+. ....|+..+++++++.+++.+.....+.++. . .+ +..+.
T Consensus 599 ~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~--~-~i-~~~i~ 674 (980)
T 3ibv_A 599 APVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENI--I-SV-YCSLM 674 (980)
T ss_dssp CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHH--H-HH-HHHHH
T ss_pred ccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHH--H-HH-HHHHH
Confidence 11345799999999998763 4556999999999999998876432222222 1 22 24678
Q ss_pred HHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHcc--cCCcchhhHHHHHHHHHHHhchhhhhcccccc
Q 006201 584 CLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAI--RSATAHEEAMLAIGALAYATGLCHHRRCCWGL 651 (657)
Q Consensus 584 ~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~--~~~~v~~~~~~~l~~l~~~~g~~f~~y~~~~~ 651 (657)
+++++++++.........+...+.++++.++..++. .+..+|+.+..++.+++.++|.++.||++..+
T Consensus 675 al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i 744 (980)
T 3ibv_A 675 AIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLI 744 (980)
T ss_dssp HHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHH
T ss_pred HHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHH
Confidence 889999987543210011455677788888777774 46789999999999999999999999998765
No 11
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=1.8e-36 Score=355.90 Aligned_cols=565 Identities=14% Similarity=0.161 Sum_probs=441.3
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHhcC--------cccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhh
Q 006201 3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQN--------LPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHR 74 (657)
Q Consensus 3 ~~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~--------~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~ 74 (657)
.++.++|.++.|+|+++|++|...|.+..+.+ ...++..|++.+.+ .+..+|..|+..|.+...
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d--~~~~vR~~A~~~L~~l~~------ 77 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED--KNGEVQNLAVKCLGPLVS------ 77 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHHHT------
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHH------
Confidence 57999999999999999999999998764432 12566667777774 589999999999988664
Q ss_pred HHHhhhhcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCC--------CCchHHHHHHHhhc-CCCh
Q 006201 75 KFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHK--------QWPELIGALLSNIH-QLPP 145 (657)
Q Consensus 75 ~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~--------~~~~l~~~l~~~l~-~~~~ 145 (657)
.++++....+++.++..+.++++.+|..++.+++.++....+.. .|++++|.+++.+. ++++
T Consensus 78 ---------~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~ 148 (1230)
T 1u6g_C 78 ---------KVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDV 148 (1230)
T ss_dssp ---------TSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCH
T ss_pred ---------hCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCch
Confidence 24567788899999999999999999999999999998865421 49999999999998 5889
Q ss_pred hHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHH
Q 006201 146 HTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVC 225 (657)
Q Consensus 146 ~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~ 225 (657)
..|..++.++..+++.. +..+ .++...+++.+.+.+. ++++.+|..|+++++.++...++.+. ..+++.+.
T Consensus 149 ~~~~~al~~l~~~~~~~-~~~l-~~~~~~ll~~l~~~L~--~~~~~vR~~a~~al~~l~~~~~~~~~-----~~~l~~l~ 219 (1230)
T 1u6g_C 149 SVQLEALDIMADMLSRQ-GGLL-VNFHPSILTCLLPQLT--SPRLAVRKRTIIALGHLVMSCGNIVF-----VDLIEHLL 219 (1230)
T ss_dssp HHHHHHHHHHHHHHHHT-CSSC-TTTHHHHHHHHGGGGG--CSSHHHHHHHHHHHHHHTTTC----C-----TTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-HhHH-HHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHhcCHHHH-----HHHHHHHH
Confidence 99999999999999887 5556 5688999999999998 67889999999999999887654432 22344444
Q ss_pred hhcc-CCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCC
Q 006201 226 EATL-SPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSG 304 (657)
Q Consensus 226 ~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~ 304 (657)
..+. ..++.+|..++++++.++...++.+.+|++.+++.++..+.+.++++|..+++++..+++.-
T Consensus 220 ~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~------------- 286 (1230)
T 1u6g_C 220 SELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRC------------- 286 (1230)
T ss_dssp HHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCT-------------
T ss_pred HHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHC-------------
Confidence 3332 23356788899999999998888889999999999999999989999999999888887631
Q ss_pred CCCCchhhHHHhhhhhHHHHHHHHhhhhc--------------------Ccc--------ccCCCcchHhhhHHHHHHHH
Q 006201 305 DSDIPCFYFIKHALPVLVPLLLETLLKQE--------------------EDQ--------DQDEGAWNIAMAGGTCLGLV 356 (657)
Q Consensus 305 ~~~~~~~~~~~~~l~~l~~~l~~~l~~~~--------------------~d~--------~~d~~~~~~r~~a~~~L~~l 356 (657)
...+.++++.++|.+++.+.+.+ +|+ ++++..|.+|.+|..+++.+
T Consensus 287 ------~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l 360 (1230)
T 1u6g_C 287 ------PKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAV 360 (1230)
T ss_dssp ------TCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHH
T ss_pred ------hHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHH
Confidence 11234567778888877665311 000 01123589999999999988
Q ss_pred HhhcCC---------------------------------------------------------------CchhchHHHHH
Q 006201 357 ARTVGD---------------------------------------------------------------DIVPLVMPFVE 373 (657)
Q Consensus 357 ~~~~~~---------------------------------------------------------------~~~~~l~~~l~ 373 (657)
+...|+ ..+|.+++.+.
T Consensus 361 ~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~ 440 (1230)
T 1u6g_C 361 VSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALH 440 (1230)
T ss_dssp HTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHH
T ss_pred HHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHH
Confidence 875542 12234445555
Q ss_pred hhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHHHHHhhhccCcCCCccC
Q 006201 374 ENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNN--HVKDTTAWTLGRMFEFLHGSTLETPII 451 (657)
Q Consensus 374 ~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~~~ 451 (657)
..+.+++|++|.+++.+++.++.++ +..+.++++.+++.++..+ +|+++ .+|..++..++.+.+... +..
T Consensus 441 ~~l~~~~~~vr~~~~~~L~~l~~~~-~~~l~~~l~~ll~~l~~~L-~d~~~~~~v~~~a~~~l~~~~~~~~------~~~ 512 (1230)
T 1u6g_C 441 KQMKEKSVKTRQCCFNMLTELVNVL-PGALTQHIPVLVPGIIFSL-NDKSSSSNLKIDALSCLYVILCNHS------PQV 512 (1230)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHS-TTTTGGGHHHHHHHHHHHT-TCSSSCHHHHHHHHHHHHHHHHSSC------GGG
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHc-hhhhHHHHHHHHHHHHHHH-cCCCCcchHHHHHHHHHHHHHHhCC------HHH
Confidence 5578889999999999999999876 5667789999999999999 88875 899999988888877554 223
Q ss_pred CcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCC-CCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHH
Q 006201 452 NQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDA-ISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYE 529 (657)
Q Consensus 452 ~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~-~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~ 529 (657)
..+|++.++|.++..++| +.+|+..|+.++..+++.+++. ......+.||++.+++.++..+...+. +..+|..++.
T Consensus 513 ~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~-~~~vr~~a~~ 591 (1230)
T 1u6g_C 513 FHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADI-DQEVKERAIS 591 (1230)
T ss_dssp GHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSS-CHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCC-CHHHHHHHHH
Confidence 456889999999999987 6889999999999999876530 011347889999999999999954333 4689999999
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHH
Q 006201 530 TLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQM 609 (657)
Q Consensus 530 al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i 609 (657)
+++.++...|..+.+++..+++.+.+.+.+ +. .|..++.+++.++...++.+ +.+|++.+
T Consensus 592 ~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~--------e~-------~r~~~~~al~~i~~~~~~~~-----~~~~~~~i 651 (1230)
T 1u6g_C 592 CMGQIICNLGDNLGSDLPNTLQIFLERLKN--------EI-------TRLTTVKALTLIAGSPLKID-----LRPVLGEG 651 (1230)
T ss_dssp HHHHHHHHTGGGCCTHHHHHHHHHHHHTTS--------SS-------HHHHHHHHHHHHTTCSSCCC-----CHHHHHHH
T ss_pred HHHHHHHHhCchhhhhHHHHHHHHHHHhcc--------ch-------hHHHHHHHHHHHHhCccccc-----hHHHHHHH
Confidence 999999999998888888888776655432 11 23346778888877665544 88999999
Q ss_pred HHHHHHHHcccCCcchhhHHHHHHHHHHHhch
Q 006201 610 MGLFLRVFAIRSATAHEEAMLAIGALAYATGL 641 (657)
Q Consensus 610 ~~~l~~~l~~~~~~v~~~~~~~l~~l~~~~g~ 641 (657)
++.+...+.+.+..+|..++.+++.++...+.
T Consensus 652 ~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~ 683 (1230)
T 1u6g_C 652 VPILASFLRKNQRALKLGTLSALDILIKNYSD 683 (1230)
T ss_dssp HHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhcccc
Confidence 99999999998889999999999999999874
No 12
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=1.1e-35 Score=330.58 Aligned_cols=572 Identities=16% Similarity=0.248 Sum_probs=412.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcc
Q 006201 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWL 83 (657)
Q Consensus 4 ~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~ 83 (657)
.+.+++..+++|+++.|++|+++|++++++ |+.+..+..++.+ +.++.+|++|+++|++.+++ .|.
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~s--p~aw~~~~~iL~~-s~~~~vR~fAa~~L~~~I~~-----------~W~ 94 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKEH--PDAWTRVDTILEF-SQNMNTKYYGLQILENVIKT-----------RWK 94 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSCC--SCHHHHHTCC----CCSHHHHHHHHHHHHHHHHH-----------TGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHcC--chHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHh-----------hhh
Confidence 578899999999999999999999999987 8999888888876 56899999999999999984 567
Q ss_pred cCChHHHHHHHHHHHHhcCC---------CChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHH
Q 006201 84 SLDSSVKAQIKSFILKTLSS---------PAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLET 154 (657)
Q Consensus 84 ~l~~~~~~~i~~~ll~~l~~---------~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~ 154 (657)
.++++.+..+|+.+++.+.. .++.+++++|.+++.+++.++| ..||++++.+++.+++ ++..++.++.+
T Consensus 95 ~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P-~~Wp~fi~dLv~~~~~-~~~~~~~~L~I 172 (1073)
T 3gjx_A 95 ILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWP-KHWPTFISDIVGASRT-SESLCQNNMVI 172 (1073)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHHH-CHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhCh-hhccHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 89999999999999998753 2468889999999999999999 5999999999998864 45677889999
Q ss_pred HHHHhhhccc---cccc-----------hhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHH
Q 006201 155 LGYICEEVSS---DAVE-----------QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYI 220 (657)
Q Consensus 155 l~~i~~~~~~---~~l~-----------~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i 220 (657)
|..+.+++.. ..++ ......+++.+.+.+.. ..++++...+++++..++.|++-... ....+
T Consensus 173 L~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~-~~~~~lv~~~L~~L~~~~sWI~i~~i---~~~~l 248 (1073)
T 3gjx_A 173 LKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMEN-SQNAPLVHATLETLLRFLNWIPLGYI---FETKL 248 (1073)
T ss_dssp HHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTTSCTHHH---HSSSH
T ss_pred HHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCHHHHHHHHHHHHHHHHhcCHHHh---ccchH
Confidence 9999888521 1111 12345666666666654 56788889999999999999753211 11246
Q ss_pred HHHH-HhhccCCcHHHHHHHHHHHHHHHHHH----HHhhHH--------------------------------hHH----
Q 006201 221 MRVV-CEATLSPEVKIRQAAFECLVAISSTY----YEKLAP--------------------------------YIQ---- 259 (657)
Q Consensus 221 l~~l-~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~~~~--------------------------------~~~---- 259 (657)
++.+ +..+ +++++|..+++||..++... .+.+.. ++.
T Consensus 249 l~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~ 326 (1073)
T 3gjx_A 249 ISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSL 326 (1073)
T ss_dssp HHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHH
T ss_pred HHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHH
Confidence 6655 4555 46678888888888877531 111100 000
Q ss_pred ------------------------HHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcC--CCC--CC--CCCCc
Q 006201 260 ------------------------DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYG--GDF--SG--DSDIP 309 (657)
Q Consensus 260 ------------------------~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~--~~~--~~--~~~~~ 309 (657)
..+..++.+...++.++...+++||..+.+.-.... ++. ... .| ..+.+
T Consensus 327 ~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~-~~~~~~~~~~~~~~~~~~~ 405 (1073)
T 3gjx_A 327 FLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRES-PFSTSASPLLSGSQHFDIP 405 (1073)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHC-CSCCCCSSCTTSSCCSCSC
T ss_pred HHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhc-cccccccccccccccccch
Confidence 011111112224566777888999999887543211 000 000 00 00111
Q ss_pred -hhhHHHhhhhhHHHHHHHHhhhhcCcc--ccCCC-----------cchHhhhHHHHHHHHHhhcCCCchhchHHHHHhh
Q 006201 310 -CFYFIKHALPVLVPLLLETLLKQEEDQ--DQDEG-----------AWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEEN 375 (657)
Q Consensus 310 -~~~~~~~~l~~l~~~l~~~l~~~~~d~--~~d~~-----------~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~ 375 (657)
.+...++++.++...++..|.+++|.- |+|++ +.+.++...++|..+....+.+....+.+.+.+.
T Consensus 406 ~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~ 485 (1073)
T 3gjx_A 406 PRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQ 485 (1073)
T ss_dssp HHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 233456778888888888888776421 11111 1134456667877776555677788888888776
Q ss_pred hcC--cchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHHHhhhccCcCCC
Q 006201 376 ITK--QEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDP-----NNHVKDTTAWTLGRMFEFLHGSTLET 448 (657)
Q Consensus 376 l~~--~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~-----~~~vr~~a~~~l~~l~~~~~~~~~~~ 448 (657)
+.+ .+|..++|+++++|+|+....++.-.++++++++.++... .++ .+.++...+|++|++++|+.
T Consensus 486 ~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~-e~~~~kd~k~~vas~i~~vlgrY~~wl~------ 558 (1073)
T 3gjx_A 486 VNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLC-EQKRGKDNKAIIASNIMYIVGQYPRFLR------ 558 (1073)
T ss_dssp HTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHH-HHSCSHHHHHHHHHHHHHHHHHCHHHHH------
T ss_pred hcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhccc-ccccccchhHHHHHHHHHHHhhhHHHHH------
Confidence 654 4699999999999999965432234578999999999877 444 46788888999999999996
Q ss_pred ccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCC--CCCCCCchhHHHHHHHHHHhhccccchhhhHHH
Q 006201 449 PIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAI--SPSSPLTPFFQEIVQALLTVTHREDAGESRLRT 525 (657)
Q Consensus 449 ~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~--~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~ 525 (657)
.+..+++.+++.+++.+++ ++.|+..||.|+..+|+.|...- .......||++.++..+.....+.+ ..++.
T Consensus 559 --~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~--~~~~~- 633 (1073)
T 3gjx_A 559 --AHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQ--PQQVH- 633 (1073)
T ss_dssp --HCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCC--HHHHH-
T ss_pred --hCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcC--HHHHH-
Confidence 4688999999999999987 79999999999999999886421 1123467899999999999887765 34444
Q ss_pred HHHHHHHHHHHhcccc--cHHHHHHHHHHHHHHHHHHHhhh----cCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchh
Q 006201 526 AAYETLNEVVRCSTDE--TAPMVMQLVPLIMMELHQTLEAQ----KLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTK 599 (657)
Q Consensus 526 ~~~~al~~l~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 599 (657)
..+++++.++...|.. ...++..+|++....|++..... .... |.+....+. .+++|...++.++|..
T Consensus 634 ~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~-d~~~i~~l~-~il~~n~~v~~~~g~~---- 707 (1073)
T 3gjx_A 634 TFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILK-DPETVKQLG-SILKTNVRACKAVGHP---- 707 (1073)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGG-CHHHHHHHH-HHHHHHHHHHHHHCGG----
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhcc-ChHHHHHHH-HHHhhhHHHHhhcchh----
Confidence 7999999999999975 35689999999999999887521 1111 222122333 5889999999999999
Q ss_pred hHhhHHHHHHHHHHHHHHc
Q 006201 600 YVFMQYADQMMGLFLRVFA 618 (657)
Q Consensus 600 ~~~~~~~~~i~~~l~~~l~ 618 (657)
|.|++.++++.++..++
T Consensus 708 --f~~~~~~i~~~~l~~y~ 724 (1073)
T 3gjx_A 708 --FVIQLGRIYLDMLNVYK 724 (1073)
T ss_dssp --GHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHH
Confidence 99999999998876654
No 13
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=1.5e-32 Score=310.51 Aligned_cols=559 Identities=13% Similarity=0.157 Sum_probs=419.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhcCcc--------cHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHH
Q 006201 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQNLP--------GFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKF 76 (657)
Q Consensus 5 l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~~~--------~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~ 76 (657)
+.+++..+.+.++.+|..|-..|+..-++.|. ..-..+++.+.+ .+..+|..++..+....+..+
T Consensus 50 l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~~--~~~~vr~~~a~~i~~ia~~~~----- 122 (852)
T 4fdd_A 50 LIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGD--SSPLIRATVGILITTIASKGE----- 122 (852)
T ss_dssp HHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTTC--SSHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhcC-----
Confidence 34555555567889999999999866544321 223334555553 578999999999988776432
Q ss_pred HhhhhcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC-------CCCchHHHHHHHhhcCCChhHHH
Q 006201 77 ELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH-------KQWPELIGALLSNIHQLPPHTKQ 149 (657)
Q Consensus 77 ~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~-------~~~~~l~~~l~~~l~~~~~~~~~ 149 (657)
...|+. +.+.+++.+.+++..+|..+..+++.++....+. ..++.++|.+.+.++++++.+|.
T Consensus 123 --~~~wp~--------ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~ 192 (852)
T 4fdd_A 123 --LQNWPD--------LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRS 192 (852)
T ss_dssp --TTTCTT--------HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHH
T ss_pred --ccccHH--------HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHH
Confidence 246754 4567778888889999999999999999865221 12678999999999999999999
Q ss_pred HHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhcc
Q 006201 150 ATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATL 229 (657)
Q Consensus 150 ~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~ 229 (657)
.++.++..++... ++.+ ..+...+++.+.+.+. ++++++|..++++|..++...+..+.. +...+++.+...++
T Consensus 193 ~A~~aL~~~~~~~-~~~~-~~~~~~~l~~l~~~~~--d~~~~vr~~a~~~L~~l~~~~~~~~~~--~l~~l~~~l~~~~~ 266 (852)
T 4fdd_A 193 HAVACVNQFIISR-TQAL-MLHIDSFIENLFALAG--DEEPEVRKNVCRALVMLLEVRMDRLLP--HMHNIVEYMLQRTQ 266 (852)
T ss_dssp HHHHHHHTTTTTT-CHHH-HTSHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHHHHCHHHHGG--GHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcc-cHHH-HHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHhCHHHHHH--HHHHHHHHHHHHcc
Confidence 9999999877654 3333 3556778888888888 789999999999999998765544332 22467888888888
Q ss_pred CCcHHHHHHHHHHHHHHHHH--HHHhhHHhHHHHHHHHHHHHh-----------c-----------CChHHHHHHHHHHH
Q 006201 230 SPEVKIRQAAFECLVAISST--YYEKLAPYIQDIFNITAKAVR-----------E-----------DEEPVALQAIEFWS 285 (657)
Q Consensus 230 ~~~~~~~~~~~~~l~~l~~~--~~~~~~~~~~~l~~~~~~~~~-----------~-----------~~~~v~~~a~~~~~ 285 (657)
+.++++|..++++|..+++. ..+.+.+++..+++.++..+. + .+..+|..+...+.
T Consensus 267 ~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~ 346 (852)
T 4fdd_A 267 DQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALD 346 (852)
T ss_dssp CSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHH
Confidence 88999999999999998863 334567888899998887762 2 11235666776666
Q ss_pred HHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCC---
Q 006201 286 SVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD--- 362 (657)
Q Consensus 286 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~--- 362 (657)
.++.... ...++.++|.+.+.+. +.+|..|.+|..+++.++...++
T Consensus 347 ~la~~~~----------------------~~~~~~l~~~l~~~l~---------~~~~~~R~aa~~alg~i~~~~~~~~~ 395 (852)
T 4fdd_A 347 VLANVYR----------------------DELLPHILPLLKELLF---------HHEWVVKESGILVLGAIAEGCMQGMI 395 (852)
T ss_dssp HHHHHHG----------------------GGGHHHHHHHHHHHHT---------CSSHHHHHHHHHHHHHTTTTTHHHHG
T ss_pred HHHHhcc----------------------HHHHHHHHHHHHHHhc---------CCCHHHHHHHHHHHHHHHhcchHHHH
Confidence 6665321 2234456666665553 12499999999999999887653
Q ss_pred CchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhc
Q 006201 363 DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLH 442 (657)
Q Consensus 363 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~ 442 (657)
..++.+++.+...+.|+++.+|.+++++++.+++.........++..+++.++..+ .|+++.||.+|+++++.+++...
T Consensus 396 ~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L-~d~~~~vr~~a~~aL~~l~~~~~ 474 (852)
T 4fdd_A 396 PYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEAC 474 (852)
T ss_dssp GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHhh
Confidence 45677888888999999999999999999998875433345677889999999999 99999999999999999998875
Q ss_pred cCcCCCccCCcccHHHHHHHHHHHccc-chHHHH---------------------------------------------H
Q 006201 443 GSTLETPIINQGNCQQIISVLLQSMKD-VPNVAE---------------------------------------------K 476 (657)
Q Consensus 443 ~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~---------------------------------------------~ 476 (657)
. ...+|++.+++.+...+++ +.+... .
T Consensus 475 ~-------~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~ 547 (852)
T 4fdd_A 475 T-------ELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFP 547 (852)
T ss_dssp G-------GGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHH
T ss_pred H-------hhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence 3 2456777777777777663 222211 2
Q ss_pred HHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccc--------------cchhhhHHHHHHHHHHHHHHhccccc
Q 006201 477 ACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHRE--------------DAGESRLRTAAYETLNEVVRCSTDET 542 (657)
Q Consensus 477 a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~--------------~~~~~~~~~~~~~al~~l~~~~~~~~ 542 (657)
++.++..++..++ ..+.||++.+++.+++.+... +..+..++..++++++.+++..|..+
T Consensus 548 ~~~~l~~i~~~~g------~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~ 621 (852)
T 4fdd_A 548 LLECLSSVATALQ------SGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNI 621 (852)
T ss_dssp HHHHHHHHHHHHG------GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHh------HhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhH
Confidence 3344444444432 357789999888777776432 11134577789999999999999999
Q ss_pred HHHH--HHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHccc
Q 006201 543 APMV--MQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIR 620 (657)
Q Consensus 543 ~~~~--~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~ 620 (657)
.+|+ ..+++.+++.+.. .. ..+|..++.+++.++..+|.. +.+|++.+++.+.+.+...
T Consensus 622 ~~~~~~~~~~~~l~~~l~~---------~~----~~vr~~a~~~l~~l~~~~~~~------~~~~l~~~lp~l~~~l~~~ 682 (852)
T 4fdd_A 622 EQLVARSNILTLMYQCMQD---------KM----PEVRQSSFALLGDLTKACFQH------VKPCIADFMPILGTNLNPE 682 (852)
T ss_dssp HHHHHTCCHHHHHHHHTTC---------SS----HHHHHHHHHHHHHHHHHCGGG------TGGGHHHHHHHHHHTCCTT
T ss_pred HHHhcCCcHHHHHHHHhCC---------CC----hhHHHHHHHHHHHHHHHhhHH------HHHHHHHHHHHHHHHcCcc
Confidence 9998 6788877766632 11 146778999999999999988 9999999999999999877
Q ss_pred CCcchhhHHHHHHHHHHHhchhhhhccccc
Q 006201 621 SATAHEEAMLAIGALAYATGLCHHRRCCWG 650 (657)
Q Consensus 621 ~~~v~~~~~~~l~~l~~~~g~~f~~y~~~~ 650 (657)
+.++|..+..++|.++..+|.+|.||+...
T Consensus 683 ~~~v~~~a~~alg~i~~~~~~~~~p~~~~i 712 (852)
T 4fdd_A 683 FISVCNNATWAIGEISIQMGIEMQPYIPMV 712 (852)
T ss_dssp SHHHHHHHHHHHHHHHHHHGGGGGGGTHHH
T ss_pred chHHHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 788999999999999999999999998654
No 14
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=2.1e-31 Score=302.99 Aligned_cols=565 Identities=11% Similarity=0.133 Sum_probs=442.5
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhc-----CcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhh
Q 006201 7 QILLNAQSVDGTVRKQAEESLKQYQEQ-----NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (657)
Q Consensus 7 ~~l~~~~s~d~~~r~~A~~~L~~~~~~-----~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (657)
.+++.+.++++.+|+++.+.|..+... .||+++..|.+.+.++ .++.+|..|...++...+.... .
T Consensus 99 ~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~-~~~~~r~~al~~l~~l~~~~~~--------~ 169 (861)
T 2bpt_A 99 NALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAE-QPENVKRASLLALGYMCESADP--------Q 169 (861)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTT-SCHHHHHHHHHHHHHHHHTSST--------T
T ss_pred HHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHcCCh--------h
Confidence 456667788889999999999876443 5678888888888752 2789999999888887653210 0
Q ss_pred cccCChHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHhhh---cCC-CCCchHHHHHHHhhcCCChhHHHHHHHHH
Q 006201 82 WLSLDSSVKAQIKSFILKTLSSP--AHDARSTASQVVAKVAGIE---LPH-KQWPELIGALLSNIHQLPPHTKQATLETL 155 (657)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~~--~~~vr~~aa~~l~~i~~~~---~~~-~~~~~l~~~l~~~l~~~~~~~~~~~l~~l 155 (657)
.. +-......+.+.+.+.+.++ +..+|..+..+++.+.... +.. ..|+.+++.+.+.+.++++.+|..++.++
T Consensus 170 ~~-~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l 248 (861)
T 2bpt_A 170 SQ-ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCL 248 (861)
T ss_dssp SS-TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hh-HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 00 12345667888888888887 7899999999999875432 110 13577899999999999999999999999
Q ss_pred HHHhhhccccccchhhHh-HHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhh-------------cCC--hhhHHH
Q 006201 156 GYICEEVSSDAVEQDHVN-KILTAVVQGMNASESNNDVRLAATRALYNALGFAQAN-------------FSN--DMERDY 219 (657)
Q Consensus 156 ~~i~~~~~~~~l~~~~~~-~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~-------------~~~--~~~~~~ 219 (657)
..++... +..+ .+++. .+++.+...+. +.+..+|..+++++..++...... ... ......
T Consensus 249 ~~l~~~~-~~~~-~~~l~~~l~~~~~~~~~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (861)
T 2bpt_A 249 CKIMSKY-YTFM-KPYMEQALYALTIATMK--SPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKD 324 (861)
T ss_dssp HHHHHHH-GGGC-HHHHHHTHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHH
T ss_pred HHHHHHH-HHHH-HHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHH
Confidence 9999988 6667 67777 89998888888 788999999999999887653110 000 011245
Q ss_pred HHHHHHhhccC-------CcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHH
Q 006201 220 IMRVVCEATLS-------PEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEI 292 (657)
Q Consensus 220 il~~l~~~~~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~ 292 (657)
+++.++..+.+ +++.+|..+..++..++...++. .++.+++.+...+.+.+..+|..++..+..+++..
T Consensus 325 il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~---~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~- 400 (861)
T 2bpt_A 325 VVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH---ILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGP- 400 (861)
T ss_dssp HHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG---GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS-
T ss_pred HHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHh---HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCC-
Confidence 66666665542 34689999999999999877643 45567787778888888899999998888887531
Q ss_pred HhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcC-----CCchhc
Q 006201 293 DILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVG-----DDIVPL 367 (657)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~-----~~~~~~ 367 (657)
....+.++++.++|.+++.+.+ ..+.+|..+..+++.++...+ ...++.
T Consensus 401 -----------------~~~~~~~~l~~il~~l~~~l~d---------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 454 (861)
T 2bpt_A 401 -----------------DKVQRTYYVHQALPSILNLMND---------QSLQVKETTAWCIGRIADSVAESIDPQQHLPG 454 (861)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHGGGC---------SCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHH
T ss_pred -----------------CHHHHHHHHHHHHHHHHHHcCC---------CcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHH
Confidence 1133456677888888877642 236899999999999998764 356788
Q ss_pred hHHHHHhhhcCcchhhHHHHHHHHHHhhcCCC---CCcchHHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhc
Q 006201 368 VMPFVEENITKQEWRQREAATYAFGSILEGPS---PEKLVPLVNIALNFMLTALMQ--DPNNHVKDTTAWTLGRMFEFLH 442 (657)
Q Consensus 368 l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~---~~~~~~~~~~i~~~l~~~l~~--d~~~~vr~~a~~~l~~l~~~~~ 442 (657)
+++.+...+.++ +++|.+++.+++.+++++. ...+.+|++.+++.+++.+ + |.++.||.+++.+++.++...+
T Consensus 455 ~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l-~~~d~~~~vr~~a~~al~~l~~~~~ 532 (861)
T 2bpt_A 455 VVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAA-NRIDNEFNARASAFSALTTMVEYAT 532 (861)
T ss_dssp HHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHH-TCSCCGGGHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH-hCcCcchHHHHHHHHHHHHHHHHcc
Confidence 888888888776 8999999999999988753 3567799999999999999 6 4558999999999999999875
Q ss_pred cCcCCCccCCcccHHHHHHHHHHHccc----------------chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHH
Q 006201 443 GSTLETPIINQGNCQQIISVLLQSMKD----------------VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIV 506 (657)
Q Consensus 443 ~~~~~~~~~~~~~~~~il~~l~~~l~d----------------~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~ 506 (657)
. ...+++..++|.+++.+.+ ...++..++.++..+++.++ ..+.||++.++
T Consensus 533 ~-------~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~------~~~~~~~~~l~ 599 (861)
T 2bpt_A 533 D-------TVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSP------SSVEPVADMLM 599 (861)
T ss_dssp G-------GGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCG------GGTGGGHHHHH
T ss_pred h-------hhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhh------hhhHHHHHHHH
Confidence 2 3456788888888877652 24678899999999999875 35789999999
Q ss_pred HHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHH
Q 006201 507 QALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQ 586 (657)
Q Consensus 507 ~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 586 (657)
+.++..++..+. + .+|..++.+++.++...+..+.||+..++|.+++.++. . +. .+|..++++++
T Consensus 600 ~~l~~~l~~~~~-~-~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~--------~-~~----~vr~~a~~~l~ 664 (861)
T 2bpt_A 600 GLFFRLLEKKDS-A-FIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQ--------V-DS----PVSITAVGFIA 664 (861)
T ss_dssp HHHHHHHHSTTG-G-GTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHC--------T-TS----HHHHHHHHHHH
T ss_pred HHHHHHHccCCC-C-cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--------c-cH----HHHHHHHHHHH
Confidence 999999987641 1 78999999999999999999999999999999888842 1 11 35667999999
Q ss_pred HHHHHhCCCcchhhHhhHHHHHHHHHHHHHHcccC--CcchhhHHHHHHHHHHHhchhhhhcccccc
Q 006201 587 VIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRS--ATAHEEAMLAIGALAYATGLCHHRRCCWGL 651 (657)
Q Consensus 587 ~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~--~~v~~~~~~~l~~l~~~~g~~f~~y~~~~~ 651 (657)
.++..+|.. +.||++.+++.++..+.+.+ .++|+.++.++|.++..+|.+|.||++..+
T Consensus 665 ~l~~~~~~~------~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l 725 (861)
T 2bpt_A 665 DISNSLEED------FRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIM 725 (861)
T ss_dssp HHHHHTGGG------GHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred HHHHHhchh------ccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 999999987 99999999999999998754 789999999999999999999999987653
No 15
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=3.3e-31 Score=288.03 Aligned_cols=534 Identities=12% Similarity=0.050 Sum_probs=409.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhc-Cc----ccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHh
Q 006201 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQ-NL----PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFEL 78 (657)
Q Consensus 4 ~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~-~~----~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~ 78 (657)
.+..++..+.++|+.+|..|.+.|..+... .+ +..+..|...+ ..+.++|..++..|.++.....
T Consensus 11 ~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~---d~~~~vr~~~~~~L~~~~~~~~------- 80 (588)
T 1b3u_A 11 PIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI---YDEDEVLLALAEQLGTFTTLVG------- 80 (588)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC---CCCHHHHHHHHHHHTTCSGGGT-------
T ss_pred cHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHhccC-------
Confidence 477899999999999999999999876543 12 23344443332 2467999999999987664321
Q ss_pred hhhcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 006201 79 VQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYI 158 (657)
Q Consensus 79 ~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i 158 (657)
.++....+...+...+.++++.+|..++.+++.++....+...++.++|.+.+...+++...|..+..+++.+
T Consensus 81 -------~~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~ 153 (588)
T 1b3u_A 81 -------GPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVC 153 (588)
T ss_dssp -------SGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHH
T ss_pred -------cHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 1122333455566667788899999999999999987633234677889888888888899999999999998
Q ss_pred hhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHH
Q 006201 159 CEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQA 238 (657)
Q Consensus 159 ~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~ 238 (657)
.... + ......++|.+.+.+. |+++.||..++++++.+....+. +.....+++.+...++++++.+|..
T Consensus 154 ~~~~-~----~~~~~~l~~~l~~l~~--d~~~~VR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~~~vr~~ 222 (588)
T 1b3u_A 154 YPRV-S----SAVKAELRQYFRNLCS--DDTPMVRRAAASKLGEFAKVLEL----DNVKSEIIPMFSNLASDEQDSVRLL 222 (588)
T ss_dssp TTTS-C----HHHHHHHHHHHHHHHT--CSCHHHHHHHHHHHHHHHHTSCH----HHHHHTHHHHHHHHHTCSCHHHHTT
T ss_pred HHhc-C----HHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHhcH----HhHHHHHHHHHHHHhcCCcHHHHHH
Confidence 7766 2 2345778888888888 78999999999999998876432 1223567888888888899999999
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhh
Q 006201 239 AFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHAL 318 (657)
Q Consensus 239 ~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 318 (657)
++.++..++...+.. .+.+.+++.+...+++.+..+|..+++.+..++..... ..+.
T Consensus 223 a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---------------------~~~~ 279 (588)
T 1b3u_A 223 AVEACVNIAQLLPQE--DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---------------------EITK 279 (588)
T ss_dssp HHHHHHHHHHHSCHH--HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---------------------HHHH
T ss_pred HHHHHHHHHHhCCHH--HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---------------------ccch
Confidence 999999998765431 23455777777778888899999999998888864200 1123
Q ss_pred hhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCC-----chhchHHHHHhhhcCcchhhHHHHHHHHHH
Q 006201 319 PVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDD-----IVPLVMPFVEENITKQEWRQREAATYAFGS 393 (657)
Q Consensus 319 ~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~-----~~~~l~~~l~~~l~~~~~~~r~aal~~l~~ 393 (657)
+.++|.+.+.+.+ +++.+|..|..+|+.++...+.. ..+.++|.+...+.+++|.+|.+++.+++.
T Consensus 280 ~~l~~~l~~~l~d---------~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~ 350 (588)
T 1b3u_A 280 TDLVPAFQNLMKD---------CEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMG 350 (588)
T ss_dssp HTHHHHHHHHHTC---------SSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGG
T ss_pred hHHHHHHHHHhCC---------CcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4567777666641 23789999999999999988764 578899999999999999999999999999
Q ss_pred hhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chH
Q 006201 394 ILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPN 472 (657)
Q Consensus 394 i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~ 472 (657)
++..++. ....+.++|.+...+ +|+++.||.+++.+++.+....+. ..+.+.++|.+.+.+.| +.+
T Consensus 351 l~~~~~~---~~~~~~l~p~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~---------~~~~~~~lp~l~~~~~d~~~~ 417 (588)
T 1b3u_A 351 LSPILGK---DNTIEHLLPLFLAQL-KDECPEVRLNIISNLDCVNEVIGI---------RQLSQSLLPAIVELAEDAKWR 417 (588)
T ss_dssp GHHHHCH---HHHHHHTHHHHHHHH-TCSCHHHHHHHHTTCHHHHHHSCH---------HHHHHHHHHHHHHHHTCSSHH
T ss_pred HHHHhhH---hHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHHHHhcCH---------HHHHHHHHHHHHHHhcCCCch
Confidence 9876531 123567889999999 999999999999999999987641 23567888999888887 689
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Q 006201 473 VAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPL 552 (657)
Q Consensus 473 v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~ 552 (657)
+|..++.++..+++.++. . .+.+.+++.++..+.+.+ ..+|..++.+++.++...|.. .+...++|.
T Consensus 418 vr~~~~~~l~~l~~~~~~-----~---~~~~~l~~~l~~~l~d~~---~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp~ 484 (588)
T 1b3u_A 418 VRLAIIEYMPLLAGQLGV-----E---FFDEKLNSLCMAWLVDHV---YAIREAATSNLKKLVEKFGKE--WAHATIIPK 484 (588)
T ss_dssp HHHHHHHHHHHHHHHHCG-----G---GCCHHHHHHHHHGGGCSS---HHHHHHHHHHHHHHHHHHCHH--HHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHcCH-----H---HHHHHHHHHHHHHhcCCc---HHHHHHHHHHHHHHHHHhCch--hHHHHHHHH
Confidence 999999999999987653 1 233567888888887654 689999999999999998864 245666666
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHcccCCcchhhHHHHH
Q 006201 553 IMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAI 632 (657)
Q Consensus 553 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~~~~l 632 (657)
+.+.+. +.+. .+|..++.+++.++..+|.+ .|.+.+++.+++.++++++.||..++.++
T Consensus 485 l~~~~~---------~~~~----~~R~~a~~~l~~l~~~~~~~--------~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l 543 (588)
T 1b3u_A 485 VLAMSG---------DPNY----LHRMTTLFCINVLSEVCGQD--------ITTKHMLPTVLRMAGDPVANVRFNVAKSL 543 (588)
T ss_dssp HHHTTT---------CSCH----HHHHHHHHHHHHHHHHHHHH--------HHHHHTHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HHHHhh---------CCCH----HHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHHHhhCCCCCchHHHHHHHHH
Confidence 553221 1111 46778999999999998865 37889999999999998899999999999
Q ss_pred HHHHHHhchhhh
Q 006201 633 GALAYATGLCHH 644 (657)
Q Consensus 633 ~~l~~~~g~~f~ 644 (657)
+.++..+|.++.
T Consensus 544 ~~l~~~~~~~~~ 555 (588)
T 1b3u_A 544 QKIGPILDNSTL 555 (588)
T ss_dssp HHHGGGSCHHHH
T ss_pred HHHHHHhchhhh
Confidence 999999887654
No 16
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=7.7e-29 Score=282.50 Aligned_cols=564 Identities=11% Similarity=0.138 Sum_probs=428.9
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHh-----cCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhc
Q 006201 8 ILLNAQSVDGTVRKQAEESLKQYQE-----QNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRW 82 (657)
Q Consensus 8 ~l~~~~s~d~~~r~~A~~~L~~~~~-----~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~ 82 (657)
+++.+.++++.+ ..+-+.+..+.. ..+|+++..|.+.+.+++.++.+|..|...|...+..... ..
T Consensus 95 ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~-------~~- 165 (876)
T 1qgr_A 95 VLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP-------EQ- 165 (876)
T ss_dssp HHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH-------HH-
T ss_pred HHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH-------hh-
Confidence 556666777777 777777765433 4578999999999886322789999999999887753210 00
Q ss_pred ccCChHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHhhhcC---CCCC-chHHHHHHHhhcCCChhHHHHHHHHHH
Q 006201 83 LSLDSSVKAQIKSFILKTLSSP--AHDARSTASQVVAKVAGIELP---HKQW-PELIGALLSNIHQLPPHTKQATLETLG 156 (657)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~~--~~~vr~~aa~~l~~i~~~~~~---~~~~-~~l~~~l~~~l~~~~~~~~~~~l~~l~ 156 (657)
-......+.+.+.+.+.++ +..+|..+..+++.++....+ ...| +.+++.+.+.+.+++..+|..++.++.
T Consensus 166 ---~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~ 242 (876)
T 1qgr_A 166 ---LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLV 242 (876)
T ss_dssp ---HGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred ---HHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 1233455667788888877 589999999999998764211 1122 237888888888889999999999999
Q ss_pred HHhhhccccccchhhHh-HHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchh----------------hcCChh---h
Q 006201 157 YICEEVSSDAVEQDHVN-KILTAVVQGMNASESNNDVRLAATRALYNALGFAQA----------------NFSNDM---E 216 (657)
Q Consensus 157 ~i~~~~~~~~l~~~~~~-~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~----------------~~~~~~---~ 216 (657)
.++... +..+ .+++. .+++.+...+. +.+..+|..+++.+..+...... ...... .
T Consensus 243 ~l~~~~-~~~~-~~~~~~~l~~~~~~~~~--~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (876)
T 1qgr_A 243 KIMSLY-YQYM-ETYMGPALFAITIEAMK--SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA 318 (876)
T ss_dssp HHHHHS-GGGC-HHHHTTTHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHH
T ss_pred HHHHHh-HHHH-HHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHH
Confidence 999987 6667 67777 89999988887 67899999999999888764210 000000 1
Q ss_pred HHHHHHHHHhhcc-------CCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhH
Q 006201 217 RDYIMRVVCEATL-------SPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCD 289 (657)
Q Consensus 217 ~~~il~~l~~~~~-------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~ 289 (657)
...+++.++..+. ++++.+|..+..++..++...++ ..++.+++.+...+.+.++.+|..++..+..+++
T Consensus 319 ~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~ 395 (876)
T 1qgr_A 319 LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE 395 (876)
T ss_dssp HHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHc
Confidence 1345566655553 34688999999999999988764 3456788888788888899999999988888775
Q ss_pred HHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCC-----Cc
Q 006201 290 EEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD-----DI 364 (657)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~-----~~ 364 (657)
.. ....+.++++.++|.++..+.+ ..+.+|..|..+++.++...+. ..
T Consensus 396 ~~------------------~~~~~~~~~~~~l~~l~~~l~d---------~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 448 (876)
T 1qgr_A 396 GP------------------EPSQLKPLVIQAMPTLIELMKD---------PSVVVRDTAAWTVGRICELLPEAAINDVY 448 (876)
T ss_dssp SS------------------CHHHHHHHHHHHHHHHHHHHTC---------SSHHHHHHHHHHHHHHHHHCGGGTSSTTT
T ss_pred CC------------------CHHHHHHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHHHHhCchhcccHHH
Confidence 31 1123445677888888877752 2368999999999999998753 56
Q ss_pred hhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCC-------------CCcchHHHHHHHHHHHHHhcCCC---cHHHHH
Q 006201 365 VPLVMPFVEENITKQEWRQREAATYAFGSILEGPS-------------PEKLVPLVNIALNFMLTALMQDP---NNHVKD 428 (657)
Q Consensus 365 ~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~-------------~~~~~~~~~~i~~~l~~~l~~d~---~~~vr~ 428 (657)
++.+++.+...+.++ +++|..++.+++.++..+. .+.+.+|++.+++.++..+ .+. +..+|.
T Consensus 449 l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l-~~~~~~~~~~r~ 526 (876)
T 1qgr_A 449 LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETT-DRPDGHQNNLRS 526 (876)
T ss_dssp HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHT-TSCSSCSTTHHH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHH-hCcCcchhhHHH
Confidence 777888888888775 8899999999999886531 2457789999999999998 654 468999
Q ss_pred HHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc------------c----hHHHHHHHHHHHHHHhhccCCC
Q 006201 429 TTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD------------V----PNVAEKACGALYFLAQGFEDAI 492 (657)
Q Consensus 429 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d------------~----~~v~~~a~~al~~l~~~~~~~~ 492 (657)
.++.+++.++...+. ...+++..+++.++..+.+ + +.++..++.++..++..++
T Consensus 527 ~~~~~l~~l~~~~~~-------~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~--- 596 (876)
T 1qgr_A 527 SAYESLMEIVKNSAK-------DCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQ--- 596 (876)
T ss_dssp HHHHHHHHHHHTCCS-------TTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSC---
T ss_pred HHHHHHHHHHHHCch-------hhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhC---
Confidence 999999999998752 4466888888888877642 1 4578889999999998753
Q ss_pred CCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhcCChhHHH
Q 006201 493 SPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDERE 572 (657)
Q Consensus 493 ~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~ 572 (657)
...+.||++.+++.++..+..... ...++..++.+++.++...+..+.||+..++|.+...+... ++.
T Consensus 597 --~~~~~~~~~~l~~~l~~~l~~~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~--------~~~- 664 (876)
T 1qgr_A 597 --HQDALQISDVVMASLLRMFQSTAG-SGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNY--------AEY- 664 (876)
T ss_dssp --HHHHHTTHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC--------TTH-
T ss_pred --hhhhhHHHHHHHHHHHHHHHhccC-CCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCc--------chH-
Confidence 035789999999999999986531 13678899999999999999999999999999888877641 111
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHcc--cCCcchhhHHHHHHHHHHHhchhhhhccccc
Q 006201 573 KQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAI--RSATAHEEAMLAIGALAYATGLCHHRRCCWG 650 (657)
Q Consensus 573 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~--~~~~v~~~~~~~l~~l~~~~g~~f~~y~~~~ 650 (657)
.+|..++++++.+++.+|.. +.||++.+++.++..++. .+.+++..++.++|.++..+|.+|.+|++..
T Consensus 665 ---~vr~~a~~~l~~l~~~~~~~------~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~ 735 (876)
T 1qgr_A 665 ---QVCLAAVGLVGDLCRALQSN------IIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVV 735 (876)
T ss_dssp ---HHHHHHHHHHHHHHHHHGGG------GHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHh------hhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHH
Confidence 46778999999999999987 999999999999999987 3567999999999999999999999998753
No 17
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=100.00 E-value=9.6e-30 Score=293.08 Aligned_cols=509 Identities=14% Similarity=0.183 Sum_probs=350.3
Q ss_pred ChhHHHHHHHHhcCC--ChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHh
Q 006201 1 MSAEVTQILLNAQSV--DGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFEL 78 (657)
Q Consensus 1 ~~~~l~~~l~~~~s~--d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~ 78 (657)
|.+++.+++..+++| |++.|++|+++|++++++ |+++..+..++.+.+.+..+|++|+++|++.+.+
T Consensus 9 ~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~--p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~--------- 77 (1204)
T 3a6p_A 9 LCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK--CPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKF--------- 77 (1204)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC--chHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH---------
Confidence 345688999999988 678899999999999887 6566666666655567899999999999999874
Q ss_pred hhhcccCChHHHHHHHHHHHHhcCC-------CChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHH
Q 006201 79 VQRWLSLDSSVKAQIKSFILKTLSS-------PAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQAT 151 (657)
Q Consensus 79 ~~~~~~l~~~~~~~i~~~ll~~l~~-------~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 151 (657)
.|..++++.+..||+.+++.+.+ ++..||++++.+++.|++.++| ..||++++.+.+.+++ ++..++.+
T Consensus 78 --~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~Wp~ll~~L~~~~~~-~~~~~e~~ 153 (1204)
T 3a6p_A 78 --RWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QHWPDMLIELDTLSKQ-GETQTELV 153 (1204)
T ss_dssp --SGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHHHHHT-CHHHHHHH
T ss_pred --hcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHhcC-CHHHHHHH
Confidence 56789999999999999998763 3589999999999999999999 6999999999999876 56778999
Q ss_pred HHHHHHHhhhcc-ccccc-----------hhhHhHHHHHHHhccCCC-----------------CCCHHHHHHHHHHHHH
Q 006201 152 LETLGYICEEVS-SDAVE-----------QDHVNKILTAVVQGMNAS-----------------ESNNDVRLAATRALYN 202 (657)
Q Consensus 152 l~~l~~i~~~~~-~~~l~-----------~~~~~~l~~~l~~~l~~~-----------------~~~~~vr~~al~~l~~ 202 (657)
+.+|..+++++. .+... ..++..+++.+.+.+.+. ..+..++..+++|+.+
T Consensus 154 L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~ 233 (1204)
T 3a6p_A 154 MFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG 233 (1204)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence 999999988741 11110 123446666665555410 1234578889999998
Q ss_pred HHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHH----------------------------------
Q 006201 203 ALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISS---------------------------------- 248 (657)
Q Consensus 203 ~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~---------------------------------- 248 (657)
++.|++..+..+. ...+++.++..+. ++++|..+++||..++.
T Consensus 234 ~l~Wi~~~~i~~~-~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~ 310 (1204)
T 3a6p_A 234 YIDWVSMSHITAE-NCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGG 310 (1204)
T ss_dssp TTTTSCHHHHHTT-TSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCS
T ss_pred HHhccCHHHHHhc-cchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCC
Confidence 8877653221000 0123333333322 23344444444444443
Q ss_pred ---------------------HHHHh--------hHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcC
Q 006201 249 ---------------------TYYEK--------LAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYG 299 (657)
Q Consensus 249 ---------------------~~~~~--------~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~ 299 (657)
..... ..+.+..+++.++....+.+..+...+++||..+.+...
T Consensus 311 ~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~------- 383 (1204)
T 3a6p_A 311 LVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEI------- 383 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTT-------
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhccc-------
Confidence 21111 112344556666666666666777777777777665320
Q ss_pred CCCCCCCCCchhhHHHhhhhhHHHHH---HHHhhhhcCcc----------cc-C----CCcchHhhhHHHHHHHHHhhcC
Q 006201 300 GDFSGDSDIPCFYFIKHALPVLVPLL---LETLLKQEEDQ----------DQ-D----EGAWNIAMAGGTCLGLVARTVG 361 (657)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~l~~l~~~l---~~~l~~~~~d~----------~~-d----~~~~~~r~~a~~~L~~l~~~~~ 361 (657)
.......+++++++++.+ +.++.++++++ .+ + +..|+.|+...+.+..++...+
T Consensus 384 --------~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p 455 (1204)
T 3a6p_A 384 --------LSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDP 455 (1204)
T ss_dssp --------TTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred --------ccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 001123567778888888 55665544221 01 1 1236899999999999999888
Q ss_pred CCchhchHHHHHhhhc-------------------------CcchhhHHHHHHHHHHhhcCCC----CCcch-HHHHHHH
Q 006201 362 DDIVPLVMPFVEENIT-------------------------KQEWRQREAATYAFGSILEGPS----PEKLV-PLVNIAL 411 (657)
Q Consensus 362 ~~~~~~l~~~l~~~l~-------------------------~~~~~~r~aal~~l~~i~~~~~----~~~~~-~~~~~i~ 411 (657)
...++.+.+.+.+.+. ++.|...++....+.+++.++. ..... ..++.++
T Consensus 456 ~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll 535 (1204)
T 3a6p_A 456 KTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELL 535 (1204)
T ss_dssp HHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHH
Confidence 7777666666643322 3458888998888888776541 11121 2344455
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-------------chHHHHHHH
Q 006201 412 NFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-------------VPNVAEKAC 478 (657)
Q Consensus 412 ~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-------------~~~v~~~a~ 478 (657)
+.++. + +..+|.+|.+++.++|+++.++. ..++++..+++.++..+.+ +..+|..||
T Consensus 536 ~~ll~-~-~~~~p~l~~~~i~~l~~l~~~~~--------~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~ 605 (1204)
T 3a6p_A 536 QMVLN-F-DTKDPLILSCVLTNVSALFPFVT--------YRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHAC 605 (1204)
T ss_dssp HHHHH-C-CCSCHHHHHHHHHHHHHHGGGGG--------TCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHH
T ss_pred HHHHh-C-CCCChHHHHHHHHHHHHHHHHHh--------cCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHH
Confidence 54333 2 34688999999999999999985 4578999999999988754 247999999
Q ss_pred HHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhcccc-chhhhHHHHHHHHHHHHHHhccc--ccHHHHHHHHHHHHH
Q 006201 479 GALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHRED-AGESRLRTAAYETLNEVVRCSTD--ETAPMVMQLVPLIMM 555 (657)
Q Consensus 479 ~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~-~~~~~~~~~~~~al~~l~~~~~~--~~~~~~~~l~~~l~~ 555 (657)
.++.++++.+. ..+.||++.+...+..++.... .. ..-+...+++++.++...+. ....|+..+++++++
T Consensus 606 ~al~~L~~~~~------~~L~p~~~~i~~~~~~~l~~~~~l~-~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~ 678 (1204)
T 3a6p_A 606 SSIIKMCRDYP------QLVLPNFDMLYNHVKQLLSNELLLT-QMEKCALMEALVLISNQFKNYERQKVFLEELMAPVAS 678 (1204)
T ss_dssp HHHHHHHHHCH------HHHGGGHHHHHHHHHHHHHSTTTSC-HHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh------HHHHHHHHHHHHHHHHHHhCccccc-HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 99999999874 4688999999999988886543 21 23344788999888655443 244578999999998
Q ss_pred HHHH
Q 006201 556 ELHQ 559 (657)
Q Consensus 556 ~l~~ 559 (657)
.|.+
T Consensus 679 ~w~~ 682 (1204)
T 3a6p_A 679 IWLS 682 (1204)
T ss_dssp HHSC
T ss_pred HHcc
Confidence 8874
No 18
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=1.1e-29 Score=298.27 Aligned_cols=537 Identities=14% Similarity=0.159 Sum_probs=410.8
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 006201 38 FLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVA 117 (657)
Q Consensus 38 ~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~ 117 (657)
.+..|++.+.+ .+.++|..|..-|.+.++.. ...+++.....+...+++.+.++++.+|..++.+++
T Consensus 7 ~l~~lL~~l~s--~d~~~R~~A~~~L~~~l~~~-----------~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~ 73 (1230)
T 1u6g_C 7 HISNLLEKMTS--SDKDFRFMATNDLMTELQKD-----------SIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLG 73 (1230)
T ss_dssp HHHHHHHHTTC--SSHHHHHHHHHHHHHHTSSS-----------CCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC--CCHhHHHHHHHHHHHHHccc-----------ccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 34556666664 58999999999888877642 123556667788888999999999999999999999
Q ss_pred HHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccc----cchhhHhHHHHHHHhccCCCCCCHHHH
Q 006201 118 KVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDA----VEQDHVNKILTAVVQGMNASESNNDVR 193 (657)
Q Consensus 118 ~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~----l~~~~~~~l~~~l~~~l~~~~~~~~vr 193 (657)
.++....+ ..++.+++.+...+.++++.+|..+..+++.++....+.. +...+...++|.+...+.+ +.++.+|
T Consensus 74 ~l~~~~~~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~-~~~~~~~ 151 (1230)
T 1u6g_C 74 PLVSKVKE-YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK-QEDVSVQ 151 (1230)
T ss_dssp HHHTTSCH-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC-CSCHHHH
T ss_pred HHHHhCCH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC-CCchHHH
Confidence 99986533 4778999999999999999999999999999998874321 1135678999999999983 3678999
Q ss_pred HHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcC-
Q 006201 194 LAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVRED- 272 (657)
Q Consensus 194 ~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~- 272 (657)
..|+.++..++......+.. +.+.+++.+...+.++++.+|..++.+++.++...++.+ ++.+++.++..+.+.
T Consensus 152 ~~al~~l~~~~~~~~~~l~~--~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~---~~~~l~~l~~~L~~~~ 226 (1230)
T 1u6g_C 152 LEALDIMADMLSRQGGLLVN--FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV---FVDLIEHLLSELSKND 226 (1230)
T ss_dssp HHHHHHHHHHHHHTCSSCTT--THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhHhHHHH--HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHhccCC
Confidence 99999999988654433332 336788999998988899999999999999987665433 233444444444432
Q ss_pred ChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHH
Q 006201 273 EEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTC 352 (657)
Q Consensus 273 ~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~ 352 (657)
++.+|..+++.|..++...+ ..+.++++.++|.+++.+.+ + +..+|..+..+
T Consensus 227 ~~~~r~~a~~~l~~l~~~~~-------------------~~~~~~l~~l~~~ll~~l~d--~-------~~~vR~~a~~~ 278 (1230)
T 1u6g_C 227 SMSTTRTYIQCIAAISRQAG-------------------HRIGEYLEKIIPLVVKFCNV--D-------DDELREYCIQA 278 (1230)
T ss_dssp SSCSCTTHHHHHHHHHHHSS-------------------GGGTTSCTTHHHHHHHHHSS--C-------CTTTHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhH-------------------HHHHHHHHHHHHHHHHHhcC--C-------CHHHHHHHHHH
Confidence 34678888999888887421 12356678889999887752 1 13689999999
Q ss_pred HHHHHhhcCCC---chhchHHHHHhhhc-------------------------------------CcchhhHHHHHHHHH
Q 006201 353 LGLVARTVGDD---IVPLVMPFVEENIT-------------------------------------KQEWRQREAATYAFG 392 (657)
Q Consensus 353 L~~l~~~~~~~---~~~~l~~~l~~~l~-------------------------------------~~~~~~r~aal~~l~ 392 (657)
+..++..+++. +++.++|.+...+. +..|++|.+|+.+++
T Consensus 279 l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~ 358 (1230)
T 1u6g_C 279 FESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLD 358 (1230)
T ss_dssp HHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHH
T ss_pred HHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHH
Confidence 99999998876 45556666554332 124899999999999
Q ss_pred HhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCc--CC---------C-ccCCcccHHHHH
Q 006201 393 SILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGST--LE---------T-PIINQGNCQQII 460 (657)
Q Consensus 393 ~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~---------~-~~~~~~~~~~il 460 (657)
.++... ++.+.++++.++|.++..+ +|++..||.+++.+++.+........ .. + ......+++.++
T Consensus 359 ~l~~~~-~~~~~~~~~~l~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll 436 (1230)
T 1u6g_C 359 AVVSTR-HEMLPEFYKTVSPALISRF-KEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIV 436 (1230)
T ss_dssp HHHTTC-CTTHHHHHTTTHHHHHSTT-SCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHH
T ss_pred HHHHhc-hhHHHHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHH
Confidence 999854 4567889999999999999 99999999999999998887653100 00 0 001134667777
Q ss_pred HHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcc
Q 006201 461 SVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCST 539 (657)
Q Consensus 461 ~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~ 539 (657)
+.+.+.+++ ++.+|..++.++..++..+ +..+.+|++.+++.++..+.+... ...++.+++.+++.+++..+
T Consensus 437 ~~l~~~l~~~~~~vr~~~~~~L~~l~~~~------~~~l~~~l~~ll~~l~~~L~d~~~-~~~v~~~a~~~l~~~~~~~~ 509 (1230)
T 1u6g_C 437 KALHKQMKEKSVKTRQCCFNMLTELVNVL------PGALTQHIPVLVPGIIFSLNDKSS-SSNLKIDALSCLYVILCNHS 509 (1230)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHS------TTTTGGGHHHHHHHHHHHTTCSSS-CHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHc------hhhhHHHHHHHHHHHHHHHcCCCC-cchHHHHHHHHHHHHHHhCC
Confidence 777777886 6889999999999999875 345789999999999999987642 24788899999999998777
Q ss_pred cc-cHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCC-------CcchhhHhhHHHHHHHH
Q 006201 540 DE-TAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGS-------SEQTKYVFMQYADQMMG 611 (657)
Q Consensus 540 ~~-~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-------~~~~~~~~~~~~~~i~~ 611 (657)
.. +.||+..++|.++..+.. ... .++..++.+++.++..+|. . +.||.+.+++
T Consensus 510 ~~~~~~~l~~llp~L~~~l~d---------~~~----~v~~~al~~l~~l~~~~~~~~~~~~~~------~~~~~~~ll~ 570 (1230)
T 1u6g_C 510 PQVFHPHVQALVPPVVACVGD---------PFY----KITSEALLVTQQLVKVIRPLDQPSSFD------ATPYIKDLFT 570 (1230)
T ss_dssp GGGGHHHHTTTHHHHHHHHTC---------SSH----HHHHHHHHHHHHHHHHHCCSSSCCCCC------CHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHcc---------cch----HHHHHHHHHHHHHHHHhcCcccccccc------hHHHHHHHHH
Confidence 65 889999999998876542 111 3556688999999999987 4 8999999999
Q ss_pred HHHHHH--cccCCcchhhHHHHHHHHHHHhchhhhhccccc
Q 006201 612 LFLRVF--AIRSATAHEEAMLAIGALAYATGLCHHRRCCWG 650 (657)
Q Consensus 612 ~l~~~l--~~~~~~v~~~~~~~l~~l~~~~g~~f~~y~~~~ 650 (657)
.++..+ .+.+.++|+.++.++|.++...|..+.+|++..
T Consensus 571 ~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~ 611 (1230)
T 1u6g_C 571 CTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNT 611 (1230)
T ss_dssp HHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHH
Confidence 999999 556778999999999999999999888876643
No 19
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.98 E-value=7.3e-30 Score=277.43 Aligned_cols=530 Identities=13% Similarity=0.094 Sum_probs=400.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhc-C----cccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHh
Q 006201 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQ-N----LPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFEL 78 (657)
Q Consensus 4 ~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~-~----~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~ 78 (657)
++...|....++++++|..+.+.|..+... . ...++..|...+.+ .+..+|..|...|++.....
T Consensus 49 ~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~~l~~~--~~~~vR~~a~~~L~~l~~~~-------- 118 (588)
T 1b3u_A 49 ELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATV--EETVVRDKAVESLRAISHEH-------- 118 (588)
T ss_dssp THHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHTTS--SCHHHHHHHHHHHHHHHTTS--------
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhC--chHHHHHHHHHHHHHHHHHC--------
Confidence 466677777788889999999999866432 1 12333334333333 58899999999999876532
Q ss_pred hhhcccCCh-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHH
Q 006201 79 VQRWLSLDS-SVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGY 157 (657)
Q Consensus 79 ~~~~~~l~~-~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~ 157 (657)
++ ..+..+.+.+.+...+++..+|..++.+++.++....+ ..++.++|.+.+.++++++.+|..++.+++.
T Consensus 119 -------~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~-~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~ 190 (588)
T 1b3u_A 119 -------SPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS-AVKAELRQYFRNLCSDDTPMVRRAAASKLGE 190 (588)
T ss_dssp -------CHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH-HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 22 22334455555556677789999999999998876532 3678999999999999999999999999999
Q ss_pred HhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHH
Q 006201 158 ICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQ 237 (657)
Q Consensus 158 i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~ 237 (657)
+++..+ . ......++|.+...++ |.++.+|..|++++..+....+. +.....+++.+....+++++.+|.
T Consensus 191 l~~~~~-~---~~~~~~l~~~l~~~~~--d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~d~~~~vR~ 260 (588)
T 1b3u_A 191 FAKVLE-L---DNVKSEIIPMFSNLAS--DEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTLRQAAEDKSWRVRY 260 (588)
T ss_dssp HHHTSC-H---HHHHHTHHHHHHHHHT--CSCHHHHTTHHHHHHHHHHHSCH----HHHHHHTHHHHHHHHTCSSHHHHH
T ss_pred HHHHhc-H---HhHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHccCCCHHHHH
Confidence 988763 2 2345678888888888 78899999999999998775432 122356778888888889999999
Q ss_pred HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhh
Q 006201 238 AAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHA 317 (657)
Q Consensus 238 ~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (657)
.++++++.++...+.. .+...+++.+...+++.++++|..+...+..+++.... ......+
T Consensus 261 ~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-----------------~~~~~~~ 321 (588)
T 1b3u_A 261 MVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSA-----------------DCRENVI 321 (588)
T ss_dssp HHHHTHHHHHHHHCHH--HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCT-----------------TTHHHHH
T ss_pred HHHHHHHHHHHHhCcc--cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCh-----------------hhhhhHH
Confidence 9999999998765321 23456788888888999999999999988888763210 0011234
Q ss_pred hhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCC-chhchHHHHHhhhcCcchhhHHHHHHHHHHhhc
Q 006201 318 LPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDD-IVPLVMPFVEENITKQEWRQREAATYAFGSILE 396 (657)
Q Consensus 318 l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~-~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~ 396 (657)
++.++|.+...+. +.+|.+|..+..+|..++..+|.. ..+.++|.+...++++++.+|.+++.+++.+..
T Consensus 322 ~~~l~p~l~~~l~---------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~ 392 (588)
T 1b3u_A 322 MSQILPCIKELVS---------DANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNE 392 (588)
T ss_dssp HHTHHHHHHHHHT---------CSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhc---------CCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Confidence 5667777766553 234899999999999999888754 357788888888999999999999999999887
Q ss_pred CCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHH
Q 006201 397 GPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAE 475 (657)
Q Consensus 397 ~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~ 475 (657)
..+ ...+.+.++|.+...+ +|+++++|.+++.+++.++..++. ..+.+.++|.+...+.| +..||.
T Consensus 393 ~~~---~~~~~~~~lp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~---------~~~~~~l~~~l~~~l~d~~~~Vr~ 459 (588)
T 1b3u_A 393 VIG---IRQLSQSLLPAIVELA-EDAKWRVRLAIIEYMPLLAGQLGV---------EFFDEKLNSLCMAWLVDHVYAIRE 459 (588)
T ss_dssp HSC---HHHHHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHCG---------GGCCHHHHHHHHHGGGCSSHHHHH
T ss_pred hcC---HHHHHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHcCH---------HHHHHHHHHHHHHHhcCCcHHHHH
Confidence 543 1234577889999989 999999999999999999998752 23446789999999987 588999
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Q 006201 476 KACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMM 555 (657)
Q Consensus 476 ~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~ 555 (657)
.|+.++..++..+++ ..+.+.+++.+.....+. +..+|..++.+++.++...+.. .|...++|.+++
T Consensus 460 ~a~~~l~~l~~~~~~--------~~~~~~llp~l~~~~~~~---~~~~R~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~ 526 (588)
T 1b3u_A 460 AATSNLKKLVEKFGK--------EWAHATIIPKVLAMSGDP---NYLHRMTTLFCINVLSEVCGQD--ITTKHMLPTVLR 526 (588)
T ss_dssp HHHHHHHHHHHHHCH--------HHHHHHTHHHHHHTTTCS---CHHHHHHHHHHHHHHHHHHHHH--HHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHhCc--------hhHHHHHHHHHHHHhhCC---CHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHh
Confidence 999999999987643 135678888888777654 3678999999999999988753 366777777766
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHcccCCcchhhHHHHHHHH
Q 006201 556 ELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGAL 635 (657)
Q Consensus 556 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~~~~l~~l 635 (657)
.+.. .++ .+|..++.+++.++..+|.. +. .+.+++.+...+++.+.++|+.+..+++.+
T Consensus 527 ~l~d---------~~~----~Vr~~a~~~l~~l~~~~~~~------~~--~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 527 MAGD---------PVA----NVRFNVAKSLQKIGPILDNS------TL--QSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp GGGC---------SCH----HHHHHHHHHHHHHGGGSCHH------HH--HHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred hCCC---------CCc----hHHHHHHHHHHHHHHHhchh------hh--HHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 5431 122 57888999999999988876 42 245666666667888899999999998865
Q ss_pred H
Q 006201 636 A 636 (657)
Q Consensus 636 ~ 636 (657)
.
T Consensus 586 ~ 586 (588)
T 1b3u_A 586 S 586 (588)
T ss_dssp T
T ss_pred h
Confidence 3
No 20
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.84 E-value=4.2e-16 Score=177.80 Aligned_cols=488 Identities=10% Similarity=0.092 Sum_probs=302.8
Q ss_pred CChHHHHHHHHHHHHHHhcCcc--------------cHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhh
Q 006201 15 VDGTVRKQAEESLKQYQEQNLP--------------GFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQ 80 (657)
Q Consensus 15 ~d~~~r~~A~~~L~~~~~~~~~--------------~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~ 80 (657)
.+.++|..|-..|+..-.+.|. .+-..|++.+.++ +..+|..++..+..+....+ ..
T Consensus 49 ~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~--~~~ir~~l~~~ia~ia~~d~-------p~ 119 (960)
T 1wa5_C 49 LPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISL--PNNLQVQIGEAISSIADSDF-------PD 119 (960)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHHS-------TT
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhhC-------cc
Confidence 3578999999999865443221 1223466666653 58899999988888766432 24
Q ss_pred hcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcC--C--CCCc-------hHHHHHHH-------hhcC
Q 006201 81 RWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELP--H--KQWP-------ELIGALLS-------NIHQ 142 (657)
Q Consensus 81 ~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~--~--~~~~-------~l~~~l~~-------~l~~ 142 (657)
.|+. +.+.|++.+.+++...+..+-.++..+.+..-. . ..++ ..++.+.+ .+++
T Consensus 120 ~Wp~--------ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~ 191 (960)
T 1wa5_C 120 RWPT--------LLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITA 191 (960)
T ss_dssp TCTT--------HHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred chhH--------HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6754 456777888877777777888888888874311 0 0111 12222222 2343
Q ss_pred CCh---hHH------HHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCC------C---C--C--HHHHHHHHHHH
Q 006201 143 LPP---HTK------QATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNAS------E---S--N--NDVRLAATRAL 200 (657)
Q Consensus 143 ~~~---~~~------~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~------~---~--~--~~vr~~al~~l 200 (657)
+.. ..+ ..+++++..+...--++.+ ..++....+.+.+.+... | . + ..+|+.+++++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l 270 (960)
T 1wa5_C 192 NENNKASLNILFDVLLVLIKLYYDFNCQDIPEFF-EDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELV 270 (960)
T ss_dssp CC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHH-HHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHH-HHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHH
Confidence 321 122 2344555444321113333 345566666666554320 1 1 1 35788999999
Q ss_pred HHHHhhchhhcCChhhHHHHHHHHHhhcc-----CCcHHHHHHHHHHHHHHHHHHH--HhhH--HhHHHHH-HHHHHHHh
Q 006201 201 YNALGFAQANFSNDMERDYIMRVVCEATL-----SPEVKIRQAAFECLVAISSTYY--EKLA--PYIQDIF-NITAKAVR 270 (657)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~~~l~~l~~~~~--~~~~--~~~~~l~-~~~~~~~~ 270 (657)
..++....+.|. .+...+++.....+. ..+..++..+++.|..+++... ..+. +++..++ ..++..+.
T Consensus 271 ~~l~~~~~~~f~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~ 348 (960)
T 1wa5_C 271 QLYTTRYEDVFG--PMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVT 348 (960)
T ss_dssp HHHHHHCHHHHH--HHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHS
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcC
Confidence 988765444332 122344444444332 3567889999999999886432 3444 7888888 56666543
Q ss_pred c---------CCh--------------HHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHH
Q 006201 271 E---------DEE--------------PVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLE 327 (657)
Q Consensus 271 ~---------~~~--------------~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 327 (657)
- .++ ..|..|..++..++.. +-+..++.+++.+.+
T Consensus 349 ~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~----------------------~~~~v~~~~l~~i~~ 406 (960)
T 1wa5_C 349 LREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEK----------------------NEVLVTNIFLAHMKG 406 (960)
T ss_dssp CCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHH----------------------CHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHH----------------------cchhHHHHHHHHHHH
Confidence 1 111 2333444444444432 123344555565555
Q ss_pred HhhhhcCccccCCCcchHhhhHHHHHHHHHhhc-----C-C------CchhchHHHHHhhhcCc---chhhHHHHHHHHH
Q 006201 328 TLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV-----G-D------DIVPLVMPFVEENITKQ---EWRQREAATYAFG 392 (657)
Q Consensus 328 ~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~-----~-~------~~~~~l~~~l~~~l~~~---~~~~r~aal~~l~ 392 (657)
.+.....++ ..+|..|.+|..+++.++... | . ++.+.+...+...+.++ +..+|.+|++++|
T Consensus 407 ~l~~~~~~~---~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg 483 (960)
T 1wa5_C 407 FVDQYMSDP---SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIY 483 (960)
T ss_dssp HHHHHHC-------CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHH
T ss_pred HHHHhccCc---chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHH
Confidence 554322221 234999999999999998642 1 1 22222333333344555 7899999999999
Q ss_pred HhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhc-----cCcCCCccCCcccHHHHHHHHHHHc
Q 006201 393 SILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLH-----GSTLETPIINQGNCQQIISVLLQSM 467 (657)
Q Consensus 393 ~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~-----~~~~~~~~~~~~~~~~il~~l~~~l 467 (657)
.+++.. -..++..+++.++..+ .|++++||.+|++++.++++... ++.. ......+|++.+++.|+..+
T Consensus 484 ~~~~~~----~~~~l~~~l~~l~~~L-~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~-~~~~l~p~l~~ll~~L~~ll 557 (960)
T 1wa5_C 484 TFRNQL----TKAQLIELMPILATFL-QTDEYVVYTYAAITIEKILTIRESNTSPAFIF-HKEDISNSTEILLKNLIALI 557 (960)
T ss_dssp HTGGGS----CHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSS-CGGGTTTTHHHHHHHHHHHH
T ss_pred HHHhhC----CHHHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHhcccccccccccc-cHHHhhhhHHHHHHHHHHHH
Confidence 998754 2457888999999999 99999999999999999988421 0000 01235689999999999888
Q ss_pred ccc----hH--HHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccc--cchhhhHHHHHHHHHHHHHHhcc
Q 006201 468 KDV----PN--VAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHRE--DAGESRLRTAAYETLNEVVRCST 539 (657)
Q Consensus 468 ~d~----~~--v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~--~~~~~~~~~~~~~al~~l~~~~~ 539 (657)
+.. ++ ....+..++..++..++ ..+.||++.+++.|...+... +..+...+..++++++.+++..+
T Consensus 558 ~~~~~~~~~~~~~e~l~~al~~vv~~~~------~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~ 631 (960)
T 1wa5_C 558 LKHGSSPEKLAENEFLMRSIFRVLQTSE------DSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQ 631 (960)
T ss_dssp HTTCCCHHHHTSCHHHHHHHHHHHHHHT------TTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSC
T ss_pred HhccCCCCcccccHHHHHHHHHHHHHHH------HhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC
Confidence 742 22 44678889999988764 568899999999998887642 11135566679999999999855
Q ss_pred -cccHHHHHHHHHHHHHHHHH
Q 006201 540 -DETAPMVMQLVPLIMMELHQ 559 (657)
Q Consensus 540 -~~~~~~~~~l~~~l~~~l~~ 559 (657)
+.+.++...++|.+...+++
T Consensus 632 ~~~~~~~~~~~~p~~~~iL~~ 652 (960)
T 1wa5_C 632 RQNLPLLVDSMMPTFLTVFSE 652 (960)
T ss_dssp GGGHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHh
Confidence 35677888888888777654
No 21
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.84 E-value=3.4e-18 Score=179.43 Aligned_cols=405 Identities=11% Similarity=0.088 Sum_probs=295.1
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCC--ChhHHHHHHHHHHHHhhhcc----------
Q 006201 96 FILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQL--PPHTKQATLETLGYICEEVS---------- 163 (657)
Q Consensus 96 ~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~~l~~l~~i~~~~~---------- 163 (657)
.++..+.+++..+|+.|-..|..+..... |+++..+.+.+.+. +..+|..|...|..+++...
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~-----~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (462)
T 1ibr_B 5 TILEKTVSPDRLELEAAQKFLERAAVENL-----PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (462)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhCh-----HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhh
Confidence 35666778899999999999988665332 35555566665554 67899999999999875420
Q ss_pred ccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCC--cHHHHHHHHH
Q 006201 164 SDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSP--EVKIRQAAFE 241 (657)
Q Consensus 164 ~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~--~~~~~~~~~~ 241 (657)
...+..+....+...+++.+. +.+..+ ..+..++..+...... ...++.+++.+...++++ ++.+|..++.
T Consensus 80 ~~~l~~~~~~~ik~~ll~~l~--~~~~~v-~~~~~~i~~ia~~~~~----~~~w~~ll~~L~~~l~~~~~~~~~r~~al~ 152 (462)
T 1ibr_B 80 WLAIDANARREVKNYVLQTLG--TETYRP-SSASQCVAGIACAEIP----VNQWPELIPQLVANVTNPNSTEHMKESTLE 152 (462)
T ss_dssp HHTSCHHHHHHHHHHHHHHTT--CCCSSS-CSHHHHHHHHHHHHGG----GTCCTTHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhC--CCCchh-hHHHHHHHHHHHHhcc----ccccHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 012323444566677777777 455566 7788888887764211 113456888888888777 8999999999
Q ss_pred HHHHHHHHH-HHhhHHhHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhh
Q 006201 242 CLVAISSTY-YEKLAPYIQDIFNITAKAVRED--EEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHAL 318 (657)
Q Consensus 242 ~l~~l~~~~-~~~~~~~~~~l~~~~~~~~~~~--~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 318 (657)
++..+++.. ++.+.++.+.+++.+...+++. ++.+|..++..+..+.+...+... . .....
T Consensus 153 ~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~-------------~-~~~~~-- 216 (462)
T 1ibr_B 153 AIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFD-------------K-ESERH-- 216 (462)
T ss_dssp HHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHT-------------S-HHHHH--
T ss_pred HHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhh-------------h-hHHHH--
Confidence 999999876 6667888899999999999887 688999999887765432100000 0 01111
Q ss_pred hhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCC---Cchh-chHHHHHhhhcCcchhhHHHHHHHHHHh
Q 006201 319 PVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD---DIVP-LVMPFVEENITKQEWRQREAATYAFGSI 394 (657)
Q Consensus 319 ~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~---~~~~-~l~~~l~~~l~~~~~~~r~aal~~l~~i 394 (657)
.+++.+...+. + .+..+|..+..+|..++...++ ..++ .+++.+...+.+.+..+|..++..++.+
T Consensus 217 -~l~~~l~~~~~----~-----~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~ 286 (462)
T 1ibr_B 217 -FIMQVVCEATQ----C-----PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV 286 (462)
T ss_dssp -HHHHHHHHHTT----C-----SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHhcC----C-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 13444433221 1 2257899999999999988764 3456 7788777777888889999999988887
Q ss_pred hcCC--------------------CCCcchHHHHHHHHHHHHHhcCC-------CcHHHHHHHHHHHHHHHhhhccCcCC
Q 006201 395 LEGP--------------------SPEKLVPLVNIALNFMLTALMQD-------PNNHVKDTTAWTLGRMFEFLHGSTLE 447 (657)
Q Consensus 395 ~~~~--------------------~~~~~~~~~~~i~~~l~~~l~~d-------~~~~vr~~a~~~l~~l~~~~~~~~~~ 447 (657)
++.. ....+.++++.++|.++..+ .+ .++.+|.+|..+++.++..++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l-~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~----- 360 (462)
T 1ibr_B 287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL-TKQDENDDDDDWNPCKAAGVCLMLLATCCE----- 360 (462)
T ss_dssp HHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHT-TCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHH-HhcccccccccchHHHHHHHHHHHHHHhcc-----
Confidence 6421 11234456788999998888 43 356899999999999999874
Q ss_pred CccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHH
Q 006201 448 TPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTA 526 (657)
Q Consensus 448 ~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~ 526 (657)
...++.+++.+...+.+ +..+|..|+.+++.+++.+. ...+.++++.+++.++..+.+.+ ..+|..
T Consensus 361 -----~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~-----~~~~~~~l~~~~~~l~~~l~d~~---~~Vr~~ 427 (462)
T 1ibr_B 361 -----DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE-----PSQLKPLVIQAMPTLIELMKDPS---VVVRDT 427 (462)
T ss_dssp -----TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC-----TTTTCTTTTTHHHHHHHGGGCSC---HHHHHH
T ss_pred -----HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCc-----HHHHHHHHHHHHHHHHHHhcCCC---HHHHHH
Confidence 36778899999999986 68999999999999987542 24577888999999999998764 789999
Q ss_pred HHHHHHHHHHhccccc--HHHHHHHHHHHHHHH
Q 006201 527 AYETLNEVVRCSTDET--APMVMQLVPLIMMEL 557 (657)
Q Consensus 527 ~~~al~~l~~~~~~~~--~~~~~~l~~~l~~~l 557 (657)
++.+++.+.+..++.+ .+|+..+++.+++.+
T Consensus 428 a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 428 AAWTVGRICELLPEAAINDVYLAPLLQCLIEGL 460 (462)
T ss_dssp HHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC-
T ss_pred HHHHHHHHHHhcccccccHHHHHHHHHHHHHHh
Confidence 9999999999998754 578888888877544
No 22
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.82 E-value=9.1e-16 Score=175.98 Aligned_cols=573 Identities=11% Similarity=0.085 Sum_probs=358.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhc----CcccHHHHHHHHHhcCC---CChhHHHHHHHHHhhhcccchhhh-HH
Q 006201 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQ----NLPGFLLSLAGELVNDE---KPVESRKLAGLILKNALDAKEQHR-KF 76 (657)
Q Consensus 5 l~~~l~~~~s~d~~~r~~A~~~L~~~~~~----~~~~~~~~L~~~l~~~~---~~~~~r~~a~~~l~~~i~~~~~~~-~~ 76 (657)
+++.+....+..+.+|.+.-..+..+... +||+++..|.+.+.+.. .+...+..+..+|+...+...+.. ..
T Consensus 105 ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~ 184 (963)
T 2x19_B 105 LFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQ 184 (963)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC--
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcH
Confidence 45555553334578999999999877665 57899999998876410 144566677777666442110000 00
Q ss_pred Hhhhhc-ccCChHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHH
Q 006201 77 ELVQRW-LSLDSSVKAQIKSFILKTLSSPA--HDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLE 153 (657)
Q Consensus 77 ~~~~~~-~~l~~~~~~~i~~~ll~~l~~~~--~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~ 153 (657)
...... ..+. .....+.+.+.+.+.+.+ ..++..+..++........+...++.+++.+++.+. ++..+..++.
T Consensus 185 ~~r~~~~~~l~-~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~--~~~~~~~a~~ 261 (963)
T 2x19_B 185 YRKGLVRTSLA-VECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQ--DSELFDSSVE 261 (963)
T ss_dssp -------CCSG-GGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTT--STTTHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhC--CchHHHHHHH
Confidence 000000 1111 234455566666665543 247777888887666532222245889999998885 5678899999
Q ss_pred HHHHHhhhccccccchhhHhHHHHHHHhc-------cCCCCCCHHHHHHHHHHHHHHHhhchhhcC----ChhhHHHHHH
Q 006201 154 TLGYICEEVSSDAVEQDHVNKILTAVVQG-------MNASESNNDVRLAATRALYNALGFAQANFS----NDMERDYIMR 222 (657)
Q Consensus 154 ~l~~i~~~~~~~~l~~~~~~~l~~~l~~~-------l~~~~~~~~vr~~al~~l~~~~~~~~~~~~----~~~~~~~il~ 222 (657)
|+..++....+... .+.+..+++.++.. +. +.+.+.....++.+..+.......+. .......+++
T Consensus 262 ~l~~i~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~--~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~ 338 (963)
T 2x19_B 262 AIVNAISQPDAQRY-VNTLLKLIPLVLGLQEQLRQAVQ--NGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVN 338 (963)
T ss_dssp HHHHHHTCTTGGGC-HHHHHHHHHHHHTTHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHcccccccC-HHHHHHHHHHHHhhHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHH
Confidence 99999875422222 34455555554432 22 23445555666777766543222221 1122235666
Q ss_pred HHHhhccC-----CcHHHHHHHHHHHHHHHHHH-----------HHhhHHhHHHHHHHHHHHHhcCChH-----------
Q 006201 223 VVCEATLS-----PEVKIRQAAFECLVAISSTY-----------YEKLAPYIQDIFNITAKAVREDEEP----------- 275 (657)
Q Consensus 223 ~l~~~~~~-----~~~~~~~~~~~~l~~l~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~~~----------- 275 (657)
.+...... .++++...++..|..+++.. ...+.+++.++++.++..+..++++
T Consensus 339 ~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~ 418 (963)
T 2x19_B 339 MIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKE 418 (963)
T ss_dssp HHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHH
T ss_pred HHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHH
Confidence 66665553 35667778888888887732 2345678888888877766432221
Q ss_pred ----HHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHH
Q 006201 276 ----VALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGT 351 (657)
Q Consensus 276 ----v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~ 351 (657)
.|..+.+++..++.. .-...++.+++.+-..+.... +..+|..+.++..
T Consensus 419 ~~~~~r~~~~~~L~~~~~~----------------------~~~~~l~~~~~~l~~~l~~~~-----~~~~w~~~eaal~ 471 (963)
T 2x19_B 419 QFRIYRVDISDTLMYVYEM----------------------LGAELLSNLYDKLGRLLTSSE-----EPYSWQHTEALLY 471 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------------------HTHHHHHHHHHHHHHHHHTCC-----CSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----------------------ccHHHHHHHHHHHHHHHHhcC-----CCCchHHHHHHHH
Confidence 122222332222211 001223333333333332211 1235999999999
Q ss_pred HHHHHHhhcCC---CchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHH
Q 006201 352 CLGLVARTVGD---DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKD 428 (657)
Q Consensus 352 ~L~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~ 428 (657)
+++.++..+.+ ..++.+++.+.. +.+++..+|.++++++|.+++-.. .-.++++.+++.++..+ ++ +.||.
T Consensus 472 al~~i~~~~~~~~~~~l~~l~~~l~~-l~~~~~~vr~~~~~~l~~~~~~l~--~~~~~l~~vl~~l~~~l-~~--~~V~~ 545 (963)
T 2x19_B 472 GFQSIAETIDVNYSDVVPGLIGLIPR-ISISNVQLADTVMFTIGALSEWLA--DHPVMINSVLPLVLHAL-GN--PELSV 545 (963)
T ss_dssp HHHHHTTSCCSSCCSHHHHHHHHGGG-SCCCSHHHHHHHHHHHHHTHHHHH--HCHHHHTTTHHHHHHHT-TC--GGGHH
T ss_pred HHHHHHhhcCchhhHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHh-CC--chHHH
Confidence 99999987753 345666665443 344577899999999999886431 12367888999999999 66 89999
Q ss_pred HHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc---chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHH
Q 006201 429 TTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD---VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEI 505 (657)
Q Consensus 429 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d---~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i 505 (657)
+|++++.++++.+.. ...+|++.+++.+...+.. +...+.....+++.++...+ .....+|++.+
T Consensus 546 ~A~~al~~l~~~~~~-------~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~-----~~~~~~~~~~l 613 (963)
T 2x19_B 546 SSVSTLKKICRECKY-------DLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ-----VEEILKNLHSL 613 (963)
T ss_dssp HHHHHHHHHHHHTGG-------GCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHH
Confidence 999999999998752 4568899999999888873 46788889999999887542 13467888888
Q ss_pred HHHHHHhhcc----ccch-hhhHHHHHHHHHHHHHHhcccc----------------------cHHHHHHHHHHHHHHHH
Q 006201 506 VQALLTVTHR----EDAG-ESRLRTAAYETLNEVVRCSTDE----------------------TAPMVMQLVPLIMMELH 558 (657)
Q Consensus 506 ~~~L~~~l~~----~~~~-~~~~~~~~~~al~~l~~~~~~~----------------------~~~~~~~l~~~l~~~l~ 558 (657)
++.+...+.. .... ....+...+++++.+++..+.. +.+++..++|.+...+.
T Consensus 614 ~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 693 (963)
T 2x19_B 614 ISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLS 693 (963)
T ss_dssp HHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 8888776642 1110 1123346788999999887631 44577788887777766
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHcccCCcchhhHHHHHHHHHHH
Q 006201 559 QTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYA 638 (657)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~~~~l~~l~~~ 638 (657)
.... +. .+...++.+++.++..+|.. |.||++++++.++..+... . ....+.+++.++..
T Consensus 694 ~~~~-------~~----~v~e~~~~~l~~~~~~~~~~------~~~~l~~~~~~l~~~~~~~-~--~~~~l~l~~~li~~ 753 (963)
T 2x19_B 694 KWLN-------DA----QVVEAVCAIFEKSVKTLLDD------FAPMVPQLCEMLGRMYSTI-P--QASALDLTRQLVHI 753 (963)
T ss_dssp HHTT-------CH----HHHHHHHHHHHHHHHHSSST------TGGGHHHHHHHHHHHHHHS-C--CHHHHHHHHHHHHH
T ss_pred hccC-------ch----HHHHHHHHHHHHHHHhhccc------ccccHHHHHHHHHHHHHcC-C--ccHHHHHHHHHHHH
Confidence 5421 11 34557889999999999999 9999999999998888752 1 23577788888885
Q ss_pred hch--hhhhccc
Q 006201 639 TGL--CHHRRCC 648 (657)
Q Consensus 639 ~g~--~f~~y~~ 648 (657)
+|. .+.+++.
T Consensus 754 f~~~~~~~~~~~ 765 (963)
T 2x19_B 754 FAHEPAHFPPIE 765 (963)
T ss_dssp HTTCTTTCHHHH
T ss_pred hCCCcchHHHHH
Confidence 443 3444443
No 23
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.82 E-value=2.7e-17 Score=176.67 Aligned_cols=511 Identities=13% Similarity=0.095 Sum_probs=332.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHh--cCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhh
Q 006201 4 EVTQILLNAQSVDGTVRKQAEESLKQYQE--QNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (657)
Q Consensus 4 ~l~~~l~~~~s~d~~~r~~A~~~L~~~~~--~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (657)
++.++-+.+.++|...|+.|-..+--+.. .+.+.+...+++.+.+ .+..+|+++...+..+.+.
T Consensus 14 e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~s--~~~~~Krl~yl~l~~~~~~------------ 79 (591)
T 2vgl_B 14 EIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQT--DNLELKKLVYLYLMNYAKS------------ 79 (591)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCCGGGHHHHHHTTSS--SCHHHHHHHHHHHHHHHHH------------
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHccc------------
Confidence 56677777888998888888888864433 3455666667776654 5899999999999886542
Q ss_pred cccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhh
Q 006201 82 WLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEE 161 (657)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~ 161 (657)
.++....+.+.+.+.+.++++.+|..|..+++.+. .+ ..++.++|.+.+++.++++.+|..|+.++..++..
T Consensus 80 ----~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~---~~-~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~ 151 (591)
T 2vgl_B 80 ----QPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR---VD-KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDI 151 (591)
T ss_dssp ----SHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC---SG-GGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHS
T ss_pred ----CchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC---hH-HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhh
Confidence 23444445677888899999999988877777665 23 37788999999999999999999999999999986
Q ss_pred ccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhh-cCChhhHHHHHHHHHhhccCCcHHHHHHHH
Q 006201 162 VSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQAN-FSNDMERDYIMRVVCEATLSPEVKIRQAAF 240 (657)
Q Consensus 162 ~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~ 240 (657)
. ++.+ .. ..+++.+...+. |+++.|+..|+.+|..+...-++. ... .....+..+...+.+.++-.+..++
T Consensus 152 ~-p~~~-~~--~~~~~~l~~lL~--d~d~~V~~~A~~aL~~i~~~~~~~~~~~--l~~~~~~~Ll~~l~~~~~~~q~~il 223 (591)
T 2vgl_B 152 N-AQMV-ED--QGFLDSLRDLIA--DSNPMVVANAVAALSEISESHPNSNLLD--LNPQNINKLLTALNECTEWGQIFIL 223 (591)
T ss_dssp S-CCCH-HH--HHHHHHHHHTTS--CSCHHHHHHHHHHHHHHTTSCCSCCSCC--CHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred C-hhhc-cc--ccHHHHHHHHhC--CCChhHHHHHHHHHHHHHhhCCCccchh--ccHHHHHHHHHcCCCCCchHHHHHH
Confidence 5 6644 21 467888999998 899999999999999976532221 010 1123344444444445555566666
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhh
Q 006201 241 ECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPV 320 (657)
Q Consensus 241 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (657)
+.+..+....+ +....+++.+...+++.++.++..|+.++..+.... . .....++..+..
T Consensus 224 ~~l~~l~~~~~----~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~-------~---------~~~~~~~~~~~~ 283 (591)
T 2vgl_B 224 DCLSNYNPKDD----REAQSICERVTPRLSHANSAVVLSAVKVLMKFLELL-------P---------KDSDYYNMLLKK 283 (591)
T ss_dssp HHHHTSCCCSH----HHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSC-------C---------BTTBSHHHHHHH
T ss_pred HHHHHhCCCCh----HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhcc-------C---------CCHHHHHHHHHH
Confidence 66655432211 234567777777788888999999998887765310 0 001223333445
Q ss_pred HHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCC
Q 006201 321 LVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSP 400 (657)
Q Consensus 321 l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~ 400 (657)
+.+.++..+. . +.++|..|..++..+....++.+.+.+-.++ ...++++.+|..++..+..++..
T Consensus 284 ~~~~L~~L~~---~-------d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~--~~~~d~~~Ir~~al~~L~~l~~~--- 348 (591)
T 2vgl_B 284 LAPPLVTLLS---G-------EPEVQYVALRNINLIVQKRPEILKQEIKVFF--VKYNDPIYVKLEKLDIMIRLASQ--- 348 (591)
T ss_dssp THHHHHHHTT---S-------CHHHHHHHHHHHHHHHHHCCSTTTTCTTTTS--CCTTSCHHHHHHHHHHHHHTCCS---
T ss_pred HHHHHHHHhc---C-------CccHHHHHHHHHHHHHHhChHHHHHHHHhhe--eccCChHHHHHHHHHHHHHHCCh---
Confidence 5555553322 1 1378999999999998876655544433322 22234488999999988888754
Q ss_pred CcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHH
Q 006201 401 EKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACG 479 (657)
Q Consensus 401 ~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~ 479 (657)
.. +..+++.+...+ .+.+..+|..+++++++++..++ +....+++.++..+.+ ...++..+..
T Consensus 349 ~n----v~~iv~~L~~~l-~~~d~~~r~~~v~aI~~la~~~~-----------~~~~~~v~~Ll~ll~~~~~~v~~e~i~ 412 (591)
T 2vgl_B 349 AN----IAQVLAELKEYA-TEVDVDFVRKAVRAIGRCAIKVE-----------QSAERCVSTLLDLIQTKVNYVVQEAIV 412 (591)
T ss_dssp ST----HHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred hh----HHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhCh-----------hHHHHHHHHHHHHHcccchHHHHHHHH
Confidence 22 456777778888 88899999999999999988753 3346677788887776 4677778888
Q ss_pred HHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Q 006201 480 ALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQ 559 (657)
Q Consensus 480 al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 559 (657)
++..++..... .. +.+++.|...+.+.. +..++..++.++|.......+ ...++..+++.+
T Consensus 413 ~l~~ii~~~p~-------~~---~~~v~~L~~~l~~~~--~~~~~~~~~wilGey~~~~~~-----~~~~l~~l~~~~-- 473 (591)
T 2vgl_B 413 VIRDIFRKYPN-------KY---ESIIATLCENLDSLD--EPDARAAMIWIVGEYAERIDN-----ADELLESFLEGF-- 473 (591)
T ss_dssp HHHHHHHHSCS-------SC---CTTHHHHHHTTTTCC--SHHHHHHHHHHHHTTCTTCTT-----HHHHHHHHSTTC--
T ss_pred HHHHHHHHCcc-------hH---HHHHHHHHHHHHhcc--CHHHHHHHHHHHHcccccccC-----HHHHHHHHHHhh--
Confidence 88888775321 11 233455666665433 355676777777776555542 122222222111
Q ss_pred HHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHH-cc-cCCcchhhHHHHHHHH
Q 006201 560 TLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVF-AI-RSATAHEEAMLAIGAL 635 (657)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l-~~-~~~~v~~~~~~~l~~l 635 (657)
..+.. .+|..++.++..+....+.. . .+.+..++... .+ .+.+||+-|...++-+
T Consensus 474 -------~~~~~----~vr~~~l~a~~Kl~~~~p~~------~----~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 474 -------HDEST----QVQLTLLTAIVKLFLKKPSE------T----QELVQQVLSLATQDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp -------SSSCH----HHHHHHHHHHHHHHTTCCST------T----HHHHHHHHHHHHTTCCCHHHHHHHHHHHTTT
T ss_pred -------ccCCH----HHHHHHHHHHHHHHhcCchH------H----HHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Confidence 11122 46777777777777655443 2 23334444443 33 4568888887776655
No 24
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.81 E-value=4.3e-17 Score=186.83 Aligned_cols=567 Identities=11% Similarity=0.078 Sum_probs=342.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhc---CcccHHHHHHHHHhcCCC----ChhHHHHHHHHHhhhcccchhh---
Q 006201 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQ---NLPGFLLSLAGELVNDEK----PVESRKLAGLILKNALDAKEQH--- 73 (657)
Q Consensus 4 ~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~---~~~~~~~~L~~~l~~~~~----~~~~r~~a~~~l~~~i~~~~~~--- 73 (657)
.+++.+....+..+.+|.+.-..+..+.+. +||+++..|.+.+.++.. ++..+..+..+|+...+.....
T Consensus 86 ~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~ 165 (971)
T 2x1g_F 86 KILESIVRFAGGPKIVLNRLCISLGAYIVHMLGEWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTS 165 (971)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTCC------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcH
Confidence 355555555444578999999999988776 577888888887765210 3456777777777654311000
Q ss_pred -hHHHhhhhcccCChHHHHHHHHHHHHhcCCC-C-------hHHHHHHHHHHHHHHhh-hcCCCCCchHHHHHHHhhc--
Q 006201 74 -RKFELVQRWLSLDSSVKAQIKSFILKTLSSP-A-------HDARSTASQVVAKVAGI-ELPHKQWPELIGALLSNIH-- 141 (657)
Q Consensus 74 -~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~-~-------~~vr~~aa~~l~~i~~~-~~~~~~~~~l~~~l~~~l~-- 141 (657)
+..... ..+. .....+.+.+.+.+.+. + ..++..+..++...+.. ..|......+++.+++ +.
T Consensus 166 ~~r~~~~---~~l~-~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~~-L~~~ 240 (971)
T 2x1g_F 166 VKRVVLR---AEIA-KRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLE-VVHK 240 (971)
T ss_dssp SCHHHHH---HHHH-TTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHH-HHHH
T ss_pred HHHHHHH---HHHH-HHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCccccccHHHHHHh-hhhh
Confidence 000000 0000 01122333333333321 1 27888888999887774 2343334567787777 51
Q ss_pred --------------CCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHh-------ccCCCCCC---HHHHHHHH
Q 006201 142 --------------QLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQ-------GMNASESN---NDVRLAAT 197 (657)
Q Consensus 142 --------------~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~-------~l~~~~~~---~~vr~~al 197 (657)
++++..++.++.|+..++..-.+... .+.+..++|.+.. ... +.+ .+.....+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~--~~d~~~~~~~~~l~ 317 (971)
T 2x1g_F 241 CYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNY-PKTAFVLIKMFLDSLSEITKTEW--KRENDNEDIIVHIY 317 (971)
T ss_dssp HHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGC-HHHHHHHHHHHHHHHHHHHHHHS--SSSCSCSHHHHHHH
T ss_pred hccccccccccccCcCCcHHHHHHHHHHHHHHcCcccccc-HHHHHHHHHHHHHhHHHHHHHHh--cccccchHHHHHHH
Confidence 13568899999999999875322212 2344455554433 223 233 36666677
Q ss_pred HHHHHHHhhchhhcC---------ChhhHHHHHHHHHhhcc-----CCcHHHHHHHHHHHHHHHHHH------------H
Q 006201 198 RALYNALGFAQANFS---------NDMERDYIMRVVCEATL-----SPEVKIRQAAFECLVAISSTY------------Y 251 (657)
Q Consensus 198 ~~l~~~~~~~~~~~~---------~~~~~~~il~~l~~~~~-----~~~~~~~~~~~~~l~~l~~~~------------~ 251 (657)
+.+..+.......+. .......+++.++..+. ..++++...+++.|..+++.. .
T Consensus 318 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~ 397 (971)
T 2x1g_F 318 MLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCW 397 (971)
T ss_dssp HHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHH
Confidence 777776643222111 11122346666666543 247788999999998887632 1
Q ss_pred HhhHHhHHHHHHHHHHHHhcCCh---------------HHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHh
Q 006201 252 EKLAPYIQDIFNITAKAVREDEE---------------PVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKH 316 (657)
Q Consensus 252 ~~~~~~~~~l~~~~~~~~~~~~~---------------~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (657)
..+.+++..+++.++..+..+++ ..|..+.+++..++... -..
T Consensus 398 ~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~----------------------~~~ 455 (971)
T 2x1g_F 398 EYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVL----------------------NDY 455 (971)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTC----------------------TTH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHH----------------------hHH
Confidence 34467777888887776642111 23444444443333210 012
Q ss_pred hhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCC---CchhchHHHHHhhhc-CcchhhHHHHHHHHH
Q 006201 317 ALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD---DIVPLVMPFVEENIT-KQEWRQREAATYAFG 392 (657)
Q Consensus 317 ~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~ 392 (657)
.++.+++.+-..+.....+ ..+|..+.+|..+++.++..+.+ ..++.+++.+..... +++..+|.++++++|
T Consensus 456 ~l~~~~~~l~~~l~~~~~~----~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~ 531 (971)
T 2x1g_F 456 ILEILAAMLDEAIADLQRH----PTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMG 531 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHC----TTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCC----CCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHH
Confidence 3333444444433321111 13599999999999999887753 345666665544332 457899999999999
Q ss_pred HhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc---
Q 006201 393 SILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--- 469 (657)
Q Consensus 393 ~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--- 469 (657)
.+++-.... ..+++.+++.++..+ + +.|+.+|++++.++++.+.. ...+|++.++..+...+..
T Consensus 532 ~~~~~l~~~--~~~l~~vl~~l~~~l-~---~~v~~~A~~al~~l~~~~~~-------~l~p~~~~ll~~l~~~l~~~~~ 598 (971)
T 2x1g_F 532 SYCNWLMEN--PAYIPPAINLLVRGL-N---SSMSAQATLGLKELCRDCQL-------QLKPYADPLLNACHASLNTGRM 598 (971)
T ss_dssp HTHHHHC------CHHHHHHHHHHHH-H---SSCHHHHHHHHHHHHHHCHH-------HHHHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHhcC--HHHHHHHHHHHHHHh-C---hHHHHHHHHHHHHHHHHHHH-------hccccHHHHHHHHHHHHcCCCC
Confidence 988754211 267888999999988 4 78999999999999988752 3468888899888888874
Q ss_pred chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhcc----c--cchhhhHHHHHHHHHHHHHHhccc---
Q 006201 470 VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHR----E--DAGESRLRTAAYETLNEVVRCSTD--- 540 (657)
Q Consensus 470 ~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~----~--~~~~~~~~~~~~~al~~l~~~~~~--- 540 (657)
+...+..+..++..++.... .....+|+..+++.++..+.. . +..+.......++.|+.+++..+.
T Consensus 599 ~~~~~~~~~~ai~~i~~~~~-----~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~ 673 (971)
T 2x1g_F 599 KNSDSVRLMFSIGKLMSLLR-----PEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVD 673 (971)
T ss_dssp CHHHHHHHHHHHHHHHHTSC-----TTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred ChHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcC
Confidence 36788899999999987642 245567777777777665532 1 100111223466666766665542
Q ss_pred ----------ccHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHH
Q 006201 541 ----------ETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMM 610 (657)
Q Consensus 541 ----------~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~ 610 (657)
.+.++...++|.+...+.... . +. .+...++.+++.++..+|++ +.||+++++
T Consensus 674 ~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~------~-~~----~v~e~~~~~~~~~~~~~~~~------~~p~l~~~~ 736 (971)
T 2x1g_F 674 EQATDQPIVQPVLLVMQRTMPIFKRIAEMWV------E-EI----DVLEAACSAMKHAITNLRSS------FQPMLQDLC 736 (971)
T ss_dssp ----------CCHHHHHTTHHHHHHHHHHTT------T-CH----HHHHHHHHHHHHHHHHHHC--------CTHHHHHH
T ss_pred cccccccCCCchHHHHHHHHHHHHHHHHhcc------c-cH----HHHHHHHHHHHHHHHhhhhh------ccccHHHHH
Confidence 367788888888877775421 1 11 35567899999999999998 999999999
Q ss_pred HHHHHHHcccCCcchhhHHHHHHHHHHHhchh
Q 006201 611 GLFLRVFAIRSATAHEEAMLAIGALAYATGLC 642 (657)
Q Consensus 611 ~~l~~~l~~~~~~v~~~~~~~l~~l~~~~g~~ 642 (657)
+.++..++.. . . ..++.+++.++..+|.+
T Consensus 737 ~~l~~~~~~~-~-~-~~~l~l~~~~i~~~~~~ 765 (971)
T 2x1g_F 737 LFIVASFQTR-C-C-APTLEISKTAIVMFFKD 765 (971)
T ss_dssp HHHHHHCC---C-C-HHHHHHHHHHHTTCCC-
T ss_pred HHHHHHHhcC-C-c-hHHHHHHHHHHHHhCCC
Confidence 9999888763 2 2 46888999999888863
No 25
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.81 E-value=6.4e-17 Score=173.79 Aligned_cols=441 Identities=15% Similarity=0.139 Sum_probs=310.6
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhc--CCCChhHHHHHHHHHhhhcccchhhhHHHhhh
Q 006201 3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVN--DEKPVESRKLAGLILKNALDAKEQHRKFELVQ 80 (657)
Q Consensus 3 ~~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~--~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~ 80 (657)
.-+.++++.+.++|..+|+.+.-.+..+.+.+ ++....+++.+.. .+.++.+|..|...|.+..
T Consensus 49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~------------- 114 (591)
T 2vgl_B 49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ-PDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR------------- 114 (591)
T ss_dssp GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS-HHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC-------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-chHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-------------
Confidence 34667788778899999999999999887743 4454444444432 1468999999988887743
Q ss_pred hcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCc--hHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 006201 81 RWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWP--ELIGALLSNIHQLPPHTKQATLETLGYI 158 (657)
Q Consensus 81 ~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~~~l~~l~~i 158 (657)
.++..+.+.+.+.+++.++++.||+.|+.+++.++... | ..++ ++++.+.+.+.++++.++..|+.+|..+
T Consensus 115 -----~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p-~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i 187 (591)
T 2vgl_B 115 -----VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-A-QMVEDQGFLDSLRDLIADSNPMVVANAVAALSEI 187 (591)
T ss_dssp -----SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-C-CCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC-h-hhcccccHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 34455667778889999999999999999999999965 6 4666 5899999999999999999999999999
Q ss_pred hhhccccc-cchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHH
Q 006201 159 CEEVSSDA-VEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQ 237 (657)
Q Consensus 159 ~~~~~~~~-l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~ 237 (657)
+... ++. . .......++.+++.+. +.++-.+...++++..+. +. .+.....+++.+...+++.++.++.
T Consensus 188 ~~~~-~~~~~-~~l~~~~~~~Ll~~l~--~~~~~~q~~il~~l~~l~---~~---~~~~~~~~l~~l~~~l~~~~~~V~~ 257 (591)
T 2vgl_B 188 SESH-PNSNL-LDLNPQNINKLLTALN--ECTEWGQIFILDCLSNYN---PK---DDREAQSICERVTPRLSHANSAVVL 257 (591)
T ss_dssp TTSC-CSCCS-CCCHHHHHHHHHHHHH--HCCHHHHHHHHHHHHTSC---CC---SHHHHHHHHHHHTTCSCSSTTHHHH
T ss_pred HhhC-CCccc-hhccHHHHHHHHHcCC--CCCchHHHHHHHHHHHhC---CC---ChHHHHHHHHHHHHHHcCCChHHHH
Confidence 8875 332 1 1222344555555555 567777877777776532 11 1223356888888888888999999
Q ss_pred HHHHHHHHHHHH---HHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHH
Q 006201 238 AAFECLVAISST---YYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFI 314 (657)
Q Consensus 238 ~~~~~l~~l~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (657)
.++.++..+... .++.+......+.+.+.... +.++++|..+++.+..++...++. +
T Consensus 258 ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~-------------------~ 317 (591)
T 2vgl_B 258 SAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEI-------------------L 317 (591)
T ss_dssp HHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCST-------------------T
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHH-------------------H
Confidence 999999987532 23334444445555554443 478899999999888887643211 1
Q ss_pred HhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHh
Q 006201 315 KHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSI 394 (657)
Q Consensus 315 ~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i 394 (657)
...+..+ +... +++ +++|..|.+.+..++ .+.-+..+++.+.+++.+.++..|..++.+++.+
T Consensus 318 ~~~~~~~-------~~~~------~d~-~~Ir~~al~~L~~l~---~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~l 380 (591)
T 2vgl_B 318 KQEIKVF-------FVKY------NDP-IYVKLEKLDIMIRLA---SQANIAQVLAELKEYATEVDVDFVRKAVRAIGRC 380 (591)
T ss_dssp TTCTTTT-------SCCT------TSC-HHHHHHHHHHHHHTC---CSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhh-------eecc------CCh-HHHHHHHHHHHHHHC---ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 1111111 0100 112 788987777666554 3344567778788888888999999999999999
Q ss_pred hcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc--chH
Q 006201 395 LEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--VPN 472 (657)
Q Consensus 395 ~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~ 472 (657)
+... .+....+++.++..+ .+....|+..+..+++.+....++ . ...+++.|.+.+.+ .+.
T Consensus 381 a~~~-----~~~~~~~v~~Ll~ll-~~~~~~v~~e~i~~l~~ii~~~p~-------~----~~~~v~~L~~~l~~~~~~~ 443 (591)
T 2vgl_B 381 AIKV-----EQSAERCVSTLLDLI-QTKVNYVVQEAIVVIRDIFRKYPN-------K----YESIIATLCENLDSLDEPD 443 (591)
T ss_dssp HTTC-----HHHHHHHHHHHHHHH-HTCCHHHHHHHHHHHHHHHHHSCS-------S----CCTTHHHHHHTTTTCCSHH
T ss_pred HHhC-----hhHHHHHHHHHHHHH-cccchHHHHHHHHHHHHHHHHCcc-------h----HHHHHHHHHHHHHhccCHH
Confidence 9764 244567788889999 889999999998899888876541 2 23445666777764 588
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhccccc
Q 006201 473 VAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDET 542 (657)
Q Consensus 473 v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~ 542 (657)
++..++|+++.+++.. +..+.++..+++.+... +..+|..++.++..+....+...
T Consensus 444 ~~~~~~wilGey~~~~-----------~~~~~~l~~l~~~~~~~---~~~vr~~~l~a~~Kl~~~~p~~~ 499 (591)
T 2vgl_B 444 ARAAMIWIVGEYAERI-----------DNADELLESFLEGFHDE---STQVQLTLLTAIVKLFLKKPSET 499 (591)
T ss_dssp HHHHHHHHHHTTCTTC-----------TTHHHHHHHHSTTCSSS---CHHHHHHHHHHHHHHHTTCCSTT
T ss_pred HHHHHHHHHHcccccc-----------cCHHHHHHHHHHhhccC---CHHHHHHHHHHHHHHHhcCchHH
Confidence 9999999999876542 12346666666555433 36788899999999988877543
No 26
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.80 E-value=9.7e-18 Score=175.33 Aligned_cols=401 Identities=12% Similarity=0.078 Sum_probs=275.0
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhhhc-CCC----CCchHHHHHHHhhcCC-ChhHHHHHHHHHHHHhhhcccccc
Q 006201 94 KSFILKTLSSPAHDARSTASQVVAKVAGIEL-PHK----QWPELIGALLSNIHQL-PPHTKQATLETLGYICEEVSSDAV 167 (657)
Q Consensus 94 ~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~-~~~----~~~~l~~~l~~~l~~~-~~~~~~~~l~~l~~i~~~~~~~~l 167 (657)
.+.+++.+.++++.+|..++.++..++.... +.. .-+.++|.+++.++++ ++.+|..++.++..++... ++..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~ 100 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQT 100 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHH
Confidence 3457778888899999999999999876321 210 1127899999999988 8899999999999998743 2211
Q ss_pred chhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccC-CcHHHHHHHHHHHHHH
Q 006201 168 EQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLS-PEVKIRQAAFECLVAI 246 (657)
Q Consensus 168 ~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~l~~l 246 (657)
..-.-..++|.+.+.+. ++++++|..|+.+|.++....+.... ......+++.+..++++ .+++++..++.+|..+
T Consensus 101 ~~~~~~~~i~~L~~lL~--~~~~~vr~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l 177 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLS--SEFEDVQEQAVWALGNIAGDSTMCRD-YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNL 177 (450)
T ss_dssp HHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCHHHHH-HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHccCCHHHHH-HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 01112457899999998 67899999999999998753211100 00011356677777774 7899999999999999
Q ss_pred HHHH-HHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHH
Q 006201 247 SSTY-YEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLL 325 (657)
Q Consensus 247 ~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 325 (657)
+... +..-...+..+++.+...+.+.++.++..++..+..++....+.. .... -..++|.+
T Consensus 178 ~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~---------------~~~~---~~~~i~~L 239 (450)
T 2jdq_A 178 CRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKI---------------QAVI---DAGVCRRL 239 (450)
T ss_dssp HCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHH---------------HHHH---HTTTHHHH
T ss_pred hCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHH---------------HHHH---HcCcHHHH
Confidence 8643 222122335677777778888889999999988888876321100 0011 12456777
Q ss_pred HHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCC---ch-hchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCC
Q 006201 326 LETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDD---IV-PLVMPFVEENITKQEWRQREAATYAFGSILEGPSPE 401 (657)
Q Consensus 326 ~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~---~~-~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~ 401 (657)
+..+.. .++.+|..|..+|..++...+.. ++ ..+++.+...+.++++.+|..|+++|+.++.+. ..
T Consensus 240 ~~ll~~---------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~-~~ 309 (450)
T 2jdq_A 240 VELLMH---------NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGN-RA 309 (450)
T ss_dssp HHHTTC---------SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC-HH
T ss_pred HHHHCC---------CchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HH
Confidence 776642 22688999999999987643211 11 246677777888889999999999999999764 23
Q ss_pred cchHHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCccc-HHHHHHHHHHHccc-chHHHHHHH
Q 006201 402 KLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGN-CQQIISVLLQSMKD-VPNVAEKAC 478 (657)
Q Consensus 402 ~~~~~~-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~-~~~il~~l~~~l~d-~~~v~~~a~ 478 (657)
.....+ ..+++.++..+ .++++.||..|++++++++..... ...... -..+++.|+..+.+ ++.++..|+
T Consensus 310 ~~~~~~~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l~~~~~~------~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 382 (450)
T 2jdq_A 310 QIQTVIDANIFPALISIL-QTAEFRTRKEAAWAITNATSGGSA------EQIKYLVELGCIKPLCDLLTVMDSKIVQVAL 382 (450)
T ss_dssp HHHHHHHTTHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHTCHHHHHHGGGSSCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHHcCCCH------HHHHHHHHCCCHHHHHHHhcCCCHHHHHHHH
Confidence 333333 36788999999 899999999999999999876320 011112 23588999999986 689999999
Q ss_pred HHHHHHHhhccCCC-CCCCCCchhHHHH-----HHHHHHhhccccchhhhHHHHHHHHHHHHHH
Q 006201 479 GALYFLAQGFEDAI-SPSSPLTPFFQEI-----VQALLTVTHREDAGESRLRTAAYETLNEVVR 536 (657)
Q Consensus 479 ~al~~l~~~~~~~~-~~~~~l~~~~~~i-----~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~ 536 (657)
.+|.+++....... .....+.+|...+ ++.|..+.... +..++..++.++..+..
T Consensus 383 ~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~---~~~v~~~a~~~l~~~~~ 443 (450)
T 2jdq_A 383 NGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHE---NQEIYQKAFDLIEHYFG 443 (450)
T ss_dssp HHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHH---HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCC---CHHHHHHHHHHHHHHCC
Confidence 99999987532100 0012345677666 45666655443 35677777777776663
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.80 E-value=8.9e-18 Score=175.62 Aligned_cols=365 Identities=13% Similarity=0.133 Sum_probs=251.6
Q ss_pred CCCchH---HHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHh--HHHHHHHhccCCCCCCHHHHHHHHHHHH
Q 006201 127 KQWPEL---IGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVN--KILTAVVQGMNASESNNDVRLAATRALY 201 (657)
Q Consensus 127 ~~~~~l---~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~--~l~~~l~~~l~~~~~~~~vr~~al~~l~ 201 (657)
..|++. ++.+++.++++++..|..|+.+|..++........ ...+. .++|.+++.+.+ +.++.+|..|+.++.
T Consensus 13 ~~w~~~~~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~-~~~~~~~~~i~~L~~~L~~-~~~~~v~~~a~~~L~ 90 (450)
T 2jdq_A 13 MEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPI-DEVISTPGVVARFVEFLKR-KENCTLQFESAWVLT 90 (450)
T ss_dssp ---------CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCH-HHHHTSTTHHHHHHHHHTC-TTCHHHHHHHHHHHH
T ss_pred HhhccccccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCcHHHHHHHHCC-CCCHHHHHHHHHHHH
Confidence 589888 99999999999999999999999998653212222 22232 688999999984 338999999999999
Q ss_pred HHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHH-HHHHHHHHHHhc-CChHHHHH
Q 006201 202 NALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVRE-DEEPVALQ 279 (657)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~-~~~~v~~~ 279 (657)
++....++... .......++.+..+++++++++|..++.+|..++...+......+. .+++.+...+.+ .++.++..
T Consensus 91 ~l~~~~~~~~~-~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~ 169 (450)
T 2jdq_A 91 NIASGNSLQTR-IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRN 169 (450)
T ss_dssp HHHSSCHHHHH-HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHH
T ss_pred HHhcCCHHHHH-HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHH
Confidence 98753221110 0011246788888888899999999999999999765443222222 567777777775 67899999
Q ss_pred HHHHHHHHhHHH-HHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHh
Q 006201 280 AIEFWSSVCDEE-IDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVAR 358 (657)
Q Consensus 280 a~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~ 358 (657)
++..+..++... +. .. ...+..++|.+++.+... +..+|..+..+|..++.
T Consensus 170 a~~~L~~l~~~~~~~---------------~~----~~~~~~~l~~L~~~l~~~---------~~~v~~~a~~~L~~l~~ 221 (450)
T 2jdq_A 170 AVWALSNLCRGKSPP---------------PE----FAKVSPCLNVLSWLLFVS---------DTDVLADACWALSYLSD 221 (450)
T ss_dssp HHHHHHHHHCCSSSC---------------CC----GGGTGGGHHHHHHHTTCC---------CHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCCCCCC---------------CC----HHHHHHHHHHHHHHHccC---------CHHHHHHHHHHHHHHHC
Confidence 999988888531 00 00 112245677777766521 13678888899988876
Q ss_pred hcCC---C-chhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHH-HHHHHHHHHHhcCCCcHHHHHHHHHH
Q 006201 359 TVGD---D-IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWT 433 (657)
Q Consensus 359 ~~~~---~-~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~-~~i~~~l~~~l~~d~~~~vr~~a~~~ 433 (657)
..++ . .-..+++.+...+.+++|.+|..++.+|+.++.+. .......+ ..+++.++..+ +++++.+|..|+++
T Consensus 222 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll-~~~~~~vr~~a~~~ 299 (450)
T 2jdq_A 222 GPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGD-DIQTQVILNCSALQSLLHLL-SSPKESIKKEACWT 299 (450)
T ss_dssp SSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHTTTHHHHHHHHT-TCSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCC-hHHHHHHHHCccHHHHHHHH-cCCCHHHHHHHHHH
Confidence 4321 0 11235566667777889999999999999999864 22222222 24788999999 99999999999999
Q ss_pred HHHHHhhhccCcCCCccCCcccH-HHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhH-HHHHHHHH
Q 006201 434 LGRMFEFLHGSTLETPIINQGNC-QQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFF-QEIVQALL 510 (657)
Q Consensus 434 l~~l~~~~~~~~~~~~~~~~~~~-~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~-~~i~~~L~ 510 (657)
+++++..... .....+ ..++|.++..+.+ ++.+|..|+++|.+++.... +......+ ..+++.|+
T Consensus 300 L~~l~~~~~~-------~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~-----~~~~~~l~~~~~i~~L~ 367 (450)
T 2jdq_A 300 ISNITAGNRA-------QIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGS-----AEQIKYLVELGCIKPLC 367 (450)
T ss_dssp HHHHTTSCHH-------HHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTCHHHHH
T ss_pred HHHHHcCCHH-------HHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCC-----HHHHHHHHHCCCHHHHH
Confidence 9999864320 111222 3678888888886 68999999999999987521 11122222 25788899
Q ss_pred HhhccccchhhhHHHHHHHHHHHHHHhcc
Q 006201 511 TVTHREDAGESRLRTAAYETLNEVVRCST 539 (657)
Q Consensus 511 ~~l~~~~~~~~~~~~~~~~al~~l~~~~~ 539 (657)
.++...+ ..++..++.+|..++...+
T Consensus 368 ~ll~~~~---~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 368 DLLTVMD---SKIVQVALNGLENILRLGE 393 (450)
T ss_dssp HGGGSSC---HHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCC---HHHHHHHHHHHHHHHHhch
Confidence 9998654 6788899999999998664
No 28
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.77 E-value=4.4e-17 Score=173.68 Aligned_cols=401 Identities=13% Similarity=0.070 Sum_probs=275.2
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCC-----chHHHHHHHhhcCC-ChhHHHHHHHHHHHHhhhcccccc
Q 006201 94 KSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQW-----PELIGALLSNIHQL-PPHTKQATLETLGYICEEVSSDAV 167 (657)
Q Consensus 94 ~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~-----~~l~~~l~~~l~~~-~~~~~~~~l~~l~~i~~~~~~~~l 167 (657)
.+.+++.|.++++.+|..++.++..++..... ..+ ..++|.|++.+.++ ++.++..++.+|..++... ++..
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~-~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~ 166 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHR-PPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQT 166 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSS-CSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHH
Confidence 45677888888999999999999998765311 111 46889999999987 8999999999999998753 2111
Q ss_pred chhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHH
Q 006201 168 EQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAIS 247 (657)
Q Consensus 168 ~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~ 247 (657)
..-.....++.+++.+. +.++.+|..|+.+|.++....+.... ......+++.+..++.+.+++++..++.+|..++
T Consensus 167 ~~~~~~g~i~~Lv~lL~--~~~~~vr~~A~~aL~~l~~~~~~~~~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 243 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLY--TGSVEVKEQAIWALGNVAGDSTDYRD-YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC 243 (530)
T ss_dssp HHHHHTTCHHHHHHHHH--HCCHHHHHHHHHHHHHHHTTCHHHHH-HHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhCCCccchH-HHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 00111456788888888 67899999999999998753211100 0001235677777887888999999999999998
Q ss_pred HHH-HHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhh-hhHHHHH
Q 006201 248 STY-YEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHAL-PVLVPLL 325 (657)
Q Consensus 248 ~~~-~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~l 325 (657)
... +..-......+++.+...+.+.++.++..++..+..++....+ ....++ ..++|.+
T Consensus 244 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~-------------------~~~~~~~~~~v~~L 304 (530)
T 1wa5_B 244 RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQE-------------------AIQAVIDVRIPKRL 304 (530)
T ss_dssp CCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHH-------------------HHHHHHHTTCHHHH
T ss_pred CCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHH-------------------HHHHHHhcCcHHHH
Confidence 654 2222233456778888888888999999999998888853211 111122 2467777
Q ss_pred HHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCC---Cc-hhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCC
Q 006201 326 LETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD---DI-VPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPE 401 (657)
Q Consensus 326 ~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~---~~-~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~ 401 (657)
+..+.. .++.+|..|..+|..++...+. .+ -..+++.+...+.+++|.+|..|+++|+.++.+. ..
T Consensus 305 v~lL~~---------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~-~~ 374 (530)
T 1wa5_B 305 VELLSH---------ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN-TE 374 (530)
T ss_dssp HHGGGC---------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HH
T ss_pred HHHHCC---------CChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HH
Confidence 776652 2268899999999988754321 11 1246667777888889999999999999999764 33
Q ss_pred cchHHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccH--HHHHHHHHHHccc-chHHHHHH
Q 006201 402 KLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNC--QQIISVLLQSMKD-VPNVAEKA 477 (657)
Q Consensus 402 ~~~~~~-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~--~~il~~l~~~l~d-~~~v~~~a 477 (657)
....++ ..+++.++..+ .++++.+|..|+++|++++...... +.. ..++ ..+++.|+..+.+ ++.++..|
T Consensus 375 ~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~~~----~~~-~~~l~~~~~l~~L~~ll~~~~~~v~~~a 448 (530)
T 1wa5_B 375 QIQAVIDANLIPPLVKLL-EVAEYKTKKEACWAISNASSGGLQR----PDI-IRYLVSQGCIKPLCDLLEIADNRIIEVT 448 (530)
T ss_dssp HHHHHHHTTCHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHTTTC----THH-HHHHHHTTCHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCc----HHH-HHHHHHCCCHHHHHHHHhCCCHHHHHHH
Confidence 333333 35788999999 8899999999999999998864210 001 1111 2478888888886 78999999
Q ss_pred HHHHHHHHhhccCCCC-CCCCCchhHHHH-----HHHHHHhhccccchhhhHHHHHHHHHHHHHHh
Q 006201 478 CGALYFLAQGFEDAIS-PSSPLTPFFQEI-----VQALLTVTHREDAGESRLRTAAYETLNEVVRC 537 (657)
Q Consensus 478 ~~al~~l~~~~~~~~~-~~~~l~~~~~~i-----~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~ 537 (657)
+.+|.+++........ ......+|...+ ++.|..+..+. +..++..+..++..+...
T Consensus 449 l~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~---~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 449 LDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNE---NDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCS---CHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCC---CHHHHHHHHHHHHHHCCc
Confidence 9999999875421000 001234555544 55666655543 356777777777766654
No 29
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.74 E-value=1.5e-16 Score=169.61 Aligned_cols=416 Identities=13% Similarity=0.102 Sum_probs=269.0
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCc-HHHHHHHHHHHHHHHHHHHHhh
Q 006201 176 LTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPE-VKIRQAAFECLVAISSTYYEKL 254 (657)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~-~~~~~~~~~~l~~l~~~~~~~~ 254 (657)
+|.+++.+. +.++++|..|+.++.+++..-............+++.+..++.+++ +.++..++.+|..++...++..
T Consensus 76 l~~lv~~L~--s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 76 LPAMIGGVY--SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp HHHHHHHHT--SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 566677777 5689999999999999865322110000111235677777777765 9999999999999998655544
Q ss_pred HHhHH-HHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhc
Q 006201 255 APYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQE 333 (657)
Q Consensus 255 ~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ 333 (657)
...+. ..++.++..+.+.++.++..|+..+..++...+.. ...+.. ...++.++..+...
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~----------------~~~i~~--~g~l~~Ll~lL~~~- 214 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC----------------RDLVLA--NGALLPLLAQLNEH- 214 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHH----------------HHHHHH--TTCHHHHHHTCCTT-
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhh----------------HHHHHH--CCcHHHHHHHHhcC-
Confidence 33333 57888888899889999999999999998642111 011111 13566777666321
Q ss_pred CccccCCCcchHhhhHHHHHHHHHhhcCC---CchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHH-H
Q 006201 334 EDQDQDEGAWNIAMAGGTCLGLVARTVGD---DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVN-I 409 (657)
Q Consensus 334 ~d~~~d~~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~-~ 409 (657)
.++.++..+..+|..++...+. .....+++.+...+.++++.++..++.+|+.++.+. .......+. .
T Consensus 215 -------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g 286 (528)
T 4b8j_A 215 -------TKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT-NDKIQAVIEAG 286 (528)
T ss_dssp -------CCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC-HHHHHHHHHTT
T ss_pred -------CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHcC
Confidence 2257888999999999876432 234567777888888899999999999999999763 222222222 4
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc--chHHHHHHHHHHHHHHhh
Q 006201 410 ALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--VPNVAEKACGALYFLAQG 487 (657)
Q Consensus 410 i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~~l~~~ 487 (657)
+++.++..+ .++++.||..|+++|+.++..... ....-.-..+++.|+..|.+ ++.++..|+++|.+++..
T Consensus 287 ~v~~Lv~lL-~~~~~~v~~~a~~~L~nl~~~~~~------~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~ 359 (528)
T 4b8j_A 287 VCPRLVELL-LHPSPSVLIPALRTVGNIVTGDDA------QTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG 359 (528)
T ss_dssp CHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHH------HHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHH-cCCChhHHHHHHHHHHHHHcCCHH------HHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC
Confidence 788999999 999999999999999999874320 00011114567888888874 588999999999999863
Q ss_pred ccCCCCCCCCCchhH-HHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHH--HHHHHHHHHHHHHHhhh
Q 006201 488 FEDAISPSSPLTPFF-QEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVM--QLVPLIMMELHQTLEAQ 564 (657)
Q Consensus 488 ~~~~~~~~~~l~~~~-~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~ 564 (657)
.. ......+ ..+++.|+.++...+ ..++..++.+|+.++.........++. ..++.++..+..
T Consensus 360 ~~------~~~~~~~~~~~i~~L~~lL~~~~---~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~----- 425 (528)
T 4b8j_A 360 NK------DQIQAVINAGIIGPLVNLLQTAE---FDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLIC----- 425 (528)
T ss_dssp CH------HHHHHHHHTTCHHHHHHHHHHSC---HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC-----
T ss_pred CH------HHHHHHHHCCCHHHHHHHHhcCC---HHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcC-----
Confidence 11 1111222 256788888887653 678889999999999885443333432 345555554432
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcch-hhHhhHHHHH-----HHHHHHHHHcccCCcchhhHHHHHHHHHHH
Q 006201 565 KLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQT-KYVFMQYADQ-----MMGLFLRVFAIRSATAHEEAMLAIGALAYA 638 (657)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~~~-----i~~~l~~~l~~~~~~v~~~~~~~l~~l~~~ 638 (657)
. +. .++..++.++..++......... .....+|... .++.+....+..+.++++.+..++..+...
T Consensus 426 ---~-d~----~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 426 ---P-DI----RIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp ---S-CH----HHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred ---C-CH----HHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 1 22 35667889999988765331000 0002233333 355566666667788999998888887655
Q ss_pred -hchhhhhcccc
Q 006201 639 -TGLCHHRRCCW 649 (657)
Q Consensus 639 -~g~~f~~y~~~ 649 (657)
-++++.++++-
T Consensus 498 e~~~~~~~~~~~ 509 (528)
T 4b8j_A 498 EEDDTMGATTVA 509 (528)
T ss_dssp ------------
T ss_pred cccccccccCCC
Confidence 45666666543
No 30
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.73 E-value=5.5e-16 Score=165.19 Aligned_cols=407 Identities=11% Similarity=0.090 Sum_probs=277.4
Q ss_pred ccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHHHHHHhcCCC-ChHHHHHHHH
Q 006201 36 PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSP-AHDARSTASQ 114 (657)
Q Consensus 36 ~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~-~~~vr~~aa~ 114 (657)
.+.+..|+..+.+ .++.+|..|+..|++.+.....+ .+..-....+.+.|++.|.++ ++.+|..++.
T Consensus 86 ~~~i~~lv~~L~s--~~~~~~~~A~~~L~~ll~~~~~~----------~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~ 153 (530)
T 1wa5_B 86 QQELPQMTQQLNS--DDMQEQLSATVKFRQILSREHRP----------PIDVVIQAGVVPRLVEFMRENQPEMLQLEAAW 153 (530)
T ss_dssp -CCHHHHHHHHSC--SSHHHHHHHHHHHHHHTCCSSSC----------SHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCCCCc----------cHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHH
Confidence 4557778888875 37899999999999987642110 011112234567888899987 7999999999
Q ss_pred HHHHHHhhhcCC-C--CCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHH
Q 006201 115 VVAKVAGIELPH-K--QWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNND 191 (657)
Q Consensus 115 ~l~~i~~~~~~~-~--~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~ 191 (657)
+|+.++...... . ...+.+|.|++.+.++++.+|..++.+|..++... +..-..-....+++.++..+. +.+..
T Consensus 154 ~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~-~~~~~~~~~~~~l~~L~~ll~--~~~~~ 230 (530)
T 1wa5_B 154 ALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDS-TDYRDYVLQCNAMEPILGLFN--SNKPS 230 (530)
T ss_dssp HHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTCHHHHHHGGG--SCCHH
T ss_pred HHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-ccchHHHHHcCcHHHHHHHhc--cCCHH
Confidence 999998743110 0 12567899999999999999999999999998753 111100112356888888888 57899
Q ss_pred HHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHH-HHHHHHHHHHh
Q 006201 192 VRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVR 270 (657)
Q Consensus 192 vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~ 270 (657)
++..|+.+|.++...-..... ......+++.+..++.+++++++..++.+|..++...++.....+. .+++.++..+.
T Consensus 231 v~~~a~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~ 309 (530)
T 1wa5_B 231 LIRTATWTLSNLCRGKKPQPD-WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS 309 (530)
T ss_dssp HHHHHHHHHHHHHCCSSSCCC-HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG
T ss_pred HHHHHHHHHHHHhCCCCCCCc-HHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHC
Confidence 999999999998754211111 1112356778888888889999999999999998765554444443 67788888888
Q ss_pred cCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhh-hhHHHHHHHHhhhhcCccccCCCcchHhhhH
Q 006201 271 EDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHAL-PVLVPLLLETLLKQEEDQDQDEGAWNIAMAG 349 (657)
Q Consensus 271 ~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a 349 (657)
+.++.++..++..+..++..... ....++ ..++|.++..+.. ..+.+|..|
T Consensus 310 ~~~~~v~~~a~~~L~~l~~~~~~-------------------~~~~~~~~~~l~~L~~lL~~---------~~~~vr~~A 361 (530)
T 1wa5_B 310 HESTLVQTPALRAVGNIVTGNDL-------------------QTQVVINAGVLPALRLLLSS---------PKENIKKEA 361 (530)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHH-------------------HHHHHHHTTHHHHHHHHTTC---------SCHHHHHHH
T ss_pred CCChhhHHHHHHHHHHHHcCCHH-------------------HHHHHHHcchHHHHHHHHcC---------CCHHHHHHH
Confidence 88999999999998888753211 111111 2467777777653 137899999
Q ss_pred HHHHHHHHhhcCCC---ch-hchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCC-CcchHHHH--HHHHHHHHHhcCCC
Q 006201 350 GTCLGLVARTVGDD---IV-PLVMPFVEENITKQEWRQREAATYAFGSILEGPSP-EKLVPLVN--IALNFMLTALMQDP 422 (657)
Q Consensus 350 ~~~L~~l~~~~~~~---~~-~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~-~~~~~~~~--~i~~~l~~~l~~d~ 422 (657)
..+|..++...+.. ++ ..+++.+...+.++++.+|..|+++|+.++.+..+ .....++. .+++.++..+ .++
T Consensus 362 ~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll-~~~ 440 (530)
T 1wa5_B 362 CWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL-EIA 440 (530)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHT-TTC
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHH-hCC
Confidence 99999988633211 11 23455555566677889999999999999875322 02222332 3789999999 999
Q ss_pred cHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHH-----HHHHHHHccc-chHHHHHHHHHHHHHHhh
Q 006201 423 NNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQI-----ISVLLQSMKD-VPNVAEKACGALYFLAQG 487 (657)
Q Consensus 423 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~i-----l~~l~~~l~d-~~~v~~~a~~al~~l~~~ 487 (657)
++.||..+++++..+................++...+ ++.+...+.+ ++.|+..|..+|.++...
T Consensus 441 ~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 441 DNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 9999999999999998865310000000112233332 4555554444 688999999999988765
No 31
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.73 E-value=3e-13 Score=152.00 Aligned_cols=587 Identities=12% Similarity=0.117 Sum_probs=342.9
Q ss_pred hHHHHHHHHHHHHHHhc----CcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHH
Q 006201 17 GTVRKQAEESLKQYQEQ----NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQ 92 (657)
Q Consensus 17 ~~~r~~A~~~L~~~~~~----~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (657)
+.+|.+.-+.+..+... +||+++..+++.+.+ ++..+..+..+|+.+.+...+ + ....++..-+..
T Consensus 114 ~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~---~~~~~~~~L~iL~~L~EEV~~-----~--~~~~l~~~r~~~ 183 (1023)
T 4hat_C 114 KNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS---SVNVCENNMIVLKLLSEEVFD-----F--SAEQMTQAKALH 183 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHHHT-----S--CTTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHH-----h--hhccchHHHHHH
Confidence 44566666666665443 578899888888864 344566666666664432110 0 001133332333
Q ss_pred HH-----------HHHHHhcCC-CChHHHHHHHHHHHHHHhhhcCCC--CCchHHHHHH-HhhcCCChhHHHHHHHHHHH
Q 006201 93 IK-----------SFILKTLSS-PAHDARSTASQVVAKVAGIELPHK--QWPELIGALL-SNIHQLPPHTKQATLETLGY 157 (657)
Q Consensus 93 i~-----------~~ll~~l~~-~~~~vr~~aa~~l~~i~~~~~~~~--~~~~l~~~l~-~~l~~~~~~~~~~~l~~l~~ 157 (657)
++ +.+.+.+.+ .++.+...+-.+++...... |.+ .-+++++.++ ..+. ++..|..|+.||..
T Consensus 184 lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI-~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~e 260 (1023)
T 4hat_C 184 LKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWI-PYRYIYETNILELLSTKFMT--SPDTRAITLKCLTE 260 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTS-CTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhC-CHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHH
Confidence 32 233334433 34667777777777766543 211 1257888888 7765 56789999999999
Q ss_pred Hhhh-cccc--ccchhhHhHHHHHHHhcc---------------C-CCCCCHHHHHHHHHHHHHHHhhchhhcCC-hhhH
Q 006201 158 ICEE-VSSD--AVEQDHVNKILTAVVQGM---------------N-ASESNNDVRLAATRALYNALGFAQANFSN-DMER 217 (657)
Q Consensus 158 i~~~-~~~~--~l~~~~~~~l~~~l~~~l---------------~-~~~~~~~vr~~al~~l~~~~~~~~~~~~~-~~~~ 217 (657)
++.. .+++ .+ ...+..+++.++..+ . .++.+.+....-.+.+..+.......+.. +...
T Consensus 261 Iv~~~~~~~~~~~-~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~ 339 (1023)
T 4hat_C 261 VSNLKIPQDNDLI-KRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLR 339 (1023)
T ss_dssp HHTSCCCSSCHHH-HHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGH
T ss_pred HHccccCCchHHH-HHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchh
Confidence 9873 2111 12 122232333322111 1 11234455555555555544322222221 1112
Q ss_pred H---HHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHH------HhhHHhHHHHHHHHHHHHhcCChH---------H-HH
Q 006201 218 D---YIMRVVCEATLSPEVKIRQAAFECLVAISSTYY------EKLAPYIQDIFNITAKAVREDEEP---------V-AL 278 (657)
Q Consensus 218 ~---~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~---------v-~~ 278 (657)
. ..+..++.....++.++...+++.|..+++..+ ..+.|++.++++.++..+..+++. . |.
T Consensus 340 ~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e 419 (1023)
T 4hat_C 340 ELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVRE 419 (1023)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEEC
T ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHH
Confidence 2 234466666667889999999999999987543 235677788888887766543210 0 00
Q ss_pred -----HHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhh-hhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHH
Q 006201 279 -----QAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHA-LPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTC 352 (657)
Q Consensus 279 -----~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~ 352 (657)
...+.+...-+. . .++... -+.+++.++..+...-.. .+.+|..|.++..+
T Consensus 420 ~~~d~d~~~~f~~~Rd~----L----------------~~l~~l~~~~~~~~~~~~l~~~l~~---~~~~W~~~EA~~~a 476 (1023)
T 4hat_C 420 FVKESDTIQLYKSEREV----L----------------VYLTHLNVIDTEEIMISKLARQIDG---SEWSWHNINTLSWA 476 (1023)
T ss_dssp SSCCGGGHHHHHHHHHH----H----------------HHHHHHCHHHHHHHHHHHHHHHHSS---TTCCHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHH----H----------------HHHhccCHHHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHH
Confidence 000000000000 0 000000 012233333333221111 12359999999999
Q ss_pred HHHHHhhcCC----CchhchHHHHHhhhc-----CcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCc
Q 006201 353 LGLVARTVGD----DIVPLVMPFVEENIT-----KQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPN 423 (657)
Q Consensus 353 L~~l~~~~~~----~~~~~l~~~l~~~l~-----~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~ 423 (657)
+++++....+ .++|.+++.+.+... ++...+|.++++.+|..++-. ..-..+++.+++.++..+ .+++
T Consensus 477 ~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl--~~~~~~L~~vl~~L~~~l-~~~~ 553 (1023)
T 4hat_C 477 IGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFL--KAHWNFLRTVILKLFEFM-HETH 553 (1023)
T ss_dssp HHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHH--HHCHHHHHHHHHHHHHHT-TCSC
T ss_pred HHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHh-hcCC
Confidence 9999987642 457777777776654 244567888899999877643 122457889999999999 9999
Q ss_pred HHHHHHHHHHHHHHHhhhccCcC-CCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchh
Q 006201 424 NHVKDTTAWTLGRMFEFLHGSTL-ETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPF 501 (657)
Q Consensus 424 ~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~ 501 (657)
++|..+|++++.++++.+..... ..+....+|+..++..+...+.+ .+.-+..+..+++.+++.... ......+
T Consensus 554 ~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~----~~~~~~~ 629 (1023)
T 4hat_C 554 EGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERS----VAERNRL 629 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCS----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC----HhhHHHH
Confidence 99999999999999998753110 00112256889888888887765 466667889999999987532 1113345
Q ss_pred HHHHHHHHHHhhcccc--------c----hhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhh-----
Q 006201 502 FQEIVQALLTVTHRED--------A----GESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQ----- 564 (657)
Q Consensus 502 ~~~i~~~L~~~l~~~~--------~----~~~~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~----- 564 (657)
+..+++.+...++.-. . ...+.....++++++++...|..|.|++..+++.+++..+...+..
T Consensus 630 l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~ 709 (1023)
T 4hat_C 630 LSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVA 709 (1023)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555544332210 0 0012224688999999999999999999999999988766542210
Q ss_pred ----cCC--hhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHcccCCcchh-hHHHHHHHHHH
Q 006201 565 ----KLS--SDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHE-EAMLAIGALAY 637 (657)
Q Consensus 565 ----~~~--~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~-~~~~~l~~l~~ 637 (657)
... ..-+ ....+|..+++.+.+.+..... .+.....+++++++.++.-++...++.|+ .++.+++.+++
T Consensus 710 ~~g~~~~~~~~~r-~~r~ik~~il~l~~~~i~~~~~---~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~ 785 (1023)
T 4hat_C 710 AEGLIATKTPKVR-GLRTIKKEILKLVETYISKARN---LDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVE 785 (1023)
T ss_dssp HHCGGGGGSHHHH-HHHHHHHHHHHHHHHHHHHCSC---HHHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHH
T ss_pred hCCchhhccHHHH-HHHHHHHHHHHHHHHHHhcCCC---HHHHHHHhHHHHHHHHHHHHHhCChhhccHHHHHHHHHHHH
Confidence 000 0001 1123344455555555444322 22323457888999988888876666664 57889999999
Q ss_pred Hhchhhhhcccccc
Q 006201 638 ATGLCHHRRCCWGL 651 (657)
Q Consensus 638 ~~g~~f~~y~~~~~ 651 (657)
.+|..+.++++..+
T Consensus 786 ~~~~~~~~~~~~il 799 (1023)
T 4hat_C 786 KVGHMIPQGVILIL 799 (1023)
T ss_dssp HHGGGCHHHHHHHH
T ss_pred HHHHhhhhhhHHHH
Confidence 99988888877654
No 32
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.7e-16 Score=147.91 Aligned_cols=213 Identities=15% Similarity=0.232 Sum_probs=172.0
Q ss_pred CchhchHHHHHhhhcCcchhhHHHHHHHHHH-hhcCCCCCcc--hHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 006201 363 DIVPLVMPFVEENITKQEWRQREAATYAFGS-ILEGPSPEKL--VPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFE 439 (657)
Q Consensus 363 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~-i~~~~~~~~~--~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~ 439 (657)
++++.+-+-+.+.+.+.+|+.|.+|+.+|+. +++++ ++.. ...+..++..+.+.+.+|.|+.||..|+.+++.+++
T Consensus 12 ~i~~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~-~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~ 90 (249)
T 2qk1_A 12 TILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQT-KKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICD 90 (249)
T ss_dssp CCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGC-CCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred hhhhhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhcC-CccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 4555555556677889999999999999999 98775 3332 223356677787877459999999999999999999
Q ss_pred hhc-cCcCCCccCCc-ccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccc
Q 006201 440 FLH-GSTLETPIINQ-GNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHRE 516 (657)
Q Consensus 440 ~~~-~~~~~~~~~~~-~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~ 516 (657)
.+. . ... +|...++|.++..+.| .+.|+..+..++..+++.+.+ ....+|++.+++.|+..+++.
T Consensus 91 ~l~~~-------~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-----~~~~~~l~~ll~~l~~~l~~k 158 (249)
T 2qk1_A 91 KLKTP-------GFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-----LASSGRNEDMLKDILEHMKHK 158 (249)
T ss_dssp HHCTT-------TSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-----TCTTCTTHHHHHHHHHHTTCS
T ss_pred hcccc-------cccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-----cccCCcHHHHHHHHHHHHcCC
Confidence 885 3 345 8999999999999998 588999999999999998532 223345999999999999776
Q ss_pred cchhhhHHHHHHHHHHHHHHhccc---ccHHHH-HHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 006201 517 DAGESRLRTAAYETLNEVVRCSTD---ETAPMV-MQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKL 592 (657)
Q Consensus 517 ~~~~~~~~~~~~~al~~l~~~~~~---~~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 592 (657)
+ ..+|..++.++++++...+. .+.+|+ ..++|.+.+.+.. .+. .+|..+.+|++.+++.+
T Consensus 159 ~---~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D---------~~~----~VR~aA~~~l~~i~~~v 222 (249)
T 2qk1_A 159 T---PQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVND---------TQP----AIRTIGFESFAILIKIF 222 (249)
T ss_dssp S---HHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTC---------SSH----HHHHHHHHHHHHHHHHH
T ss_pred C---hHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcC---------CCH----HHHHHHHHHHHHHHHHh
Confidence 3 68999999999999999884 467888 8888888877742 222 58999999999999999
Q ss_pred CCCcchhhHhhHHHHHH
Q 006201 593 GSSEQTKYVFMQYADQM 609 (657)
Q Consensus 593 ~~~~~~~~~~~~~~~~i 609 (657)
|+.. |.||++.+
T Consensus 223 G~~~-----~~p~l~~L 234 (249)
T 2qk1_A 223 GMNT-----FVKTLEHL 234 (249)
T ss_dssp CSGG-----GHHHHHHS
T ss_pred CHHH-----HHHHHHHH
Confidence 9986 99998874
No 33
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.71 E-value=2.6e-14 Score=153.98 Aligned_cols=448 Identities=14% Similarity=0.096 Sum_probs=267.6
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhcCcccHHHHH----HHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhh
Q 006201 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSL----AGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQ 80 (657)
Q Consensus 5 l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L----~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~ 80 (657)
+.++++.+.++|-+.|+-+.-.+..+.+.+ ++..... .+-+. +.++.+|.+|+..|.+..
T Consensus 72 ~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~-~e~~~l~in~l~kDL~--~~n~~vr~lAL~~L~~i~------------- 135 (618)
T 1w63_A 72 QLECLKLIASQKFTDKRIGYLGAMLLLDER-QDVHLLMTNCIKNDLN--HSTQFVQGLALCTLGCMG------------- 135 (618)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHS--CSSSHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhcC--CCCHhHHHHHHHHHHhcC-------------
Confidence 455666666777777777777777766544 3332222 23333 356778888877777743
Q ss_pred hcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhh
Q 006201 81 RWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICE 160 (657)
Q Consensus 81 ~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~ 160 (657)
+++..+.+.+.+.+++.++++.||+.|+.+++.++... | ..-+.+++.+...+.+.++.++..|+.+|..++.
T Consensus 136 -----~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p-~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~ 208 (618)
T 1w63_A 136 -----SSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-P-ELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCE 208 (618)
T ss_dssp -----CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-G-GGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCC
T ss_pred -----CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-h-HHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHH
Confidence 23444566778888899999999999999999999875 5 3456778888888999999999999999999876
Q ss_pred hccccccchhhHhHHHHHHHhccCC-------------CCCCHHHHHHHHHHHHHHHhhchh-----------h------
Q 006201 161 EVSSDAVEQDHVNKILTAVVQGMNA-------------SESNNDVRLAATRALYNALGFAQA-----------N------ 210 (657)
Q Consensus 161 ~~~~~~l~~~~~~~l~~~l~~~l~~-------------~~~~~~vr~~al~~l~~~~~~~~~-----------~------ 210 (657)
.- ++. ..+...++|.+.+.|.+ +..++-.+...+++++.+...-+. .
T Consensus 209 ~~-~~~--~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~ 285 (618)
T 1w63_A 209 RS-PDM--LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTET 285 (618)
T ss_dssp SH-HHH--HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCC
T ss_pred hC-hHH--HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccc
Confidence 53 321 11222333333322210 013455555566666554321100 0
Q ss_pred -------------------cCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhc
Q 006201 211 -------------------FSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVRE 271 (657)
Q Consensus 211 -------------------~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~ 271 (657)
...+..+....+.+..++.+.++++|..++.++..++...|..+.++...++ .++.+
T Consensus 286 ~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~----~~l~d 361 (618)
T 1w63_A 286 SKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIV----DCLKD 361 (618)
T ss_dssp SSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHH----HGGGS
T ss_pred ccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHH----HHccC
Confidence 0000011123455566677788899999999999999988887777665544 46788
Q ss_pred CChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHH
Q 006201 272 DEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGT 351 (657)
Q Consensus 272 ~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~ 351 (657)
.+..+|..+++.+..++... + +..+++.+...+.. . +..+|..+..
T Consensus 362 ~d~~Ir~~alelL~~l~~~~--------------------n-----v~~iv~eL~~~l~~--~-------d~e~r~~~v~ 407 (618)
T 1w63_A 362 LDVSIKRRAMELSFALVNGN--------------------N-----IRGMMKELLYFLDS--C-------EPEFKADCAS 407 (618)
T ss_dssp SCHHHHHHHHHHHHHHCCSS--------------------S-----THHHHHHHHHHHHH--C-------CHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHcccc--------------------c-----HHHHHHHHHHHHHh--C-------CHHHHHHHHH
Confidence 89999999999988887521 1 12334444444442 1 1367889999
Q ss_pred HHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCC--CcHHHHHH
Q 006201 352 CLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQD--PNNHVKDT 429 (657)
Q Consensus 352 ~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d--~~~~vr~~ 429 (657)
++..++..++... ...++.+.+.+.+....++..++..+..+.... ++. . ..++..+...+ .+ .+..++.+
T Consensus 408 ~I~~la~k~~~~~-~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~-p~l-~---~~~v~~L~~~l-~~~~~~~~~~~~ 480 (618)
T 1w63_A 408 GIFLAAEKYAPSK-RWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNS-VEM-H---AYTVQRLYKAI-LGDYSQQPLVQV 480 (618)
T ss_dssp HHHHHHHSSCCCH-HHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHS-CST-H---HHHHHHHHHHH-HHCCSCSHHHHH
T ss_pred HHHHHHHHhCccH-HHHHHHHHHHHHhccchhHHHHHHHHHHHHhcC-hhH-H---HHHHHHHHHHH-hcccccHHHHHH
Confidence 9999998775432 222333334444333345555666676666542 232 2 22344555555 32 23344557
Q ss_pred HHHHHHHHHhhhccCcCCC--c-cCCcccHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHH
Q 006201 430 TAWTLGRMFEFLHGSTLET--P-IINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIV 506 (657)
Q Consensus 430 a~~~l~~l~~~~~~~~~~~--~-~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~ 506 (657)
++|++|+++..+.+...+. | ...+.....++..+++....++.+|..+..++..+.-... ...+. +
T Consensus 481 ~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~-------~~~~~----l 549 (618)
T 1w63_A 481 AAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFT-------CTVNR----I 549 (618)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCS-------SCHHH----H
T ss_pred HHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCc-------chHHH----H
Confidence 8999999998774210000 0 0111122233333333223468999999999988876531 12233 3
Q ss_pred HHHHHhhccccchhhhHHHHHHHHHHHHHH
Q 006201 507 QALLTVTHREDAGESRLRTAAYETLNEVVR 536 (657)
Q Consensus 507 ~~L~~~l~~~~~~~~~~~~~~~~al~~l~~ 536 (657)
..++....... +.++|..+...+..+..
T Consensus 550 ~~~L~~~~~~~--d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 550 KKVVSIYGSSI--DVELQQRAVEYNALFKK 577 (618)
T ss_dssp HHHHHHHTTCS--CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCC--CHHHHHHHHHHHHHHcC
Confidence 33333333222 47888888887766654
No 34
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.70 E-value=2.8e-13 Score=152.24 Aligned_cols=583 Identities=10% Similarity=0.056 Sum_probs=341.2
Q ss_pred HHHHHHHHhc--CCChHHHHHHHHHHHHHHhc----CcccHHHHHHHHHhcCCCChhHHHHHHHHHh---h-hcccchhh
Q 006201 4 EVTQILLNAQ--SVDGTVRKQAEESLKQYQEQ----NLPGFLLSLAGELVNDEKPVESRKLAGLILK---N-ALDAKEQH 73 (657)
Q Consensus 4 ~l~~~l~~~~--s~d~~~r~~A~~~L~~~~~~----~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~---~-~i~~~~~~ 73 (657)
.+.+.+.... +..+-+|.+.-..+..+..+ +||+++..+++.+.+++. ...-.....+|. . ........
T Consensus 89 ~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~-~~~~~~~LriL~~i~EEv~~~~~~~ 167 (980)
T 3ibv_A 89 SVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQ-SEFSNFYLKVLLSIGDEIADSLVLK 167 (980)
T ss_dssp HHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHCCCCSCC
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCCh-hHHHHHHHHHHHHhHHHHHhccccc
Confidence 3555555532 22357999988888876554 688999999999875322 111111122222 1 11100000
Q ss_pred hHHHhhh---hcccCChHHHHHHHHHHHHhcC----CCChHHHHHHHHHHHHHHhhhcCCC--CCchHHHHHHHhhcCCC
Q 006201 74 RKFELVQ---RWLSLDSSVKAQIKSFILKTLS----SPAHDARSTASQVVAKVAGIELPHK--QWPELIGALLSNIHQLP 144 (657)
Q Consensus 74 ~~~~~~~---~~~~l~~~~~~~i~~~ll~~l~----~~~~~vr~~aa~~l~~i~~~~~~~~--~~~~l~~~l~~~l~~~~ 144 (657)
......+ ....+..+....|-+..++.|. +.++.++..+-.+++...... |.+ .-+++++.+++.+.+
T Consensus 168 ~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi-~~~~i~~~~ll~~l~~~L~~-- 244 (980)
T 3ibv_A 168 TDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWI-NINLIVNEPCMNLLYSFLQI-- 244 (980)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS-CHHHHHCHHHHHHHHHHTTS--
T ss_pred CHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhc-CHHhhhcchHHHHHHHHcCC--
Confidence 0000000 0000111111112222333332 356677767766766665532 100 016788999988875
Q ss_pred hhHHHHHHHHHHHHhhhccccccchhhHhHHHH-----HHHhccCCCCCCHHHHHHHHHHHHHHHhhch--hhcC---Ch
Q 006201 145 PHTKQATLETLGYICEEVSSDAVEQDHVNKILT-----AVVQGMNASESNNDVRLAATRALYNALGFAQ--ANFS---ND 214 (657)
Q Consensus 145 ~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~-----~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~--~~~~---~~ 214 (657)
+..|..|+.||..++..- .. ......++. .++..+..++.+.++.+...+.+..+....- .... ..
T Consensus 245 ~~~r~~A~ecL~ei~~k~-~~---~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~ 320 (980)
T 3ibv_A 245 EELRCAACETMTEIVNKK-MK---PLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSP 320 (980)
T ss_dssp HHHHHHHHHHHHHHHHSC-CC---HHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CH
T ss_pred hHHHHHHHHHHHHHHHcC-CC---hhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccch
Confidence 789999999999998864 21 111112221 1222232114566776655555544332211 1111 00
Q ss_pred -------hhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHH---------HhhHHhHHHHHHHHHHHHhcCCh----
Q 006201 215 -------MERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYY---------EKLAPYIQDIFNITAKAVREDEE---- 274 (657)
Q Consensus 215 -------~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~---- 274 (657)
.....+++.++.++..++.++-..++..|..++.... ..+.+++..+++.++..++.+++
T Consensus 321 ~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~ 400 (980)
T 3ibv_A 321 ELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWD 400 (980)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCC
T ss_pred hhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccc
Confidence 1123577888888888888999889988888776421 33457788888888776653211
Q ss_pred ------------HHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCc
Q 006201 275 ------------PVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGA 342 (657)
Q Consensus 275 ------------~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~ 342 (657)
++|...-.+...++...++ .+.......+.+.+-+.+... ....
T Consensus 401 ~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~------------------~~l~~~~~~i~~~l~~~l~~~------~~~~ 456 (980)
T 3ibv_A 401 DDPDSEEEAEFQEMRKKLKIFQDTINSIDSS------------------LFSSYMYSAITSSLSTAATLS------PENS 456 (980)
T ss_dssp CCSSSSTHHHHHHHHHHHHHHHHHHHHHCHH------------------HHHHHHHHHHHHHHHHHTTSC------HHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhcChH------------------HHHHHHHHHHHHHHHHHhccc------CCCC
Confidence 1222222111111110000 011111112222222222200 0124
Q ss_pred chHhhhHHHHHHHHHhhcCC---------CchhchHHHHHhhhc-----CcchhhHHHHHHHHHHhhcCCCCCcchHHHH
Q 006201 343 WNIAMAGGTCLGLVARTVGD---------DIVPLVMPFVEENIT-----KQEWRQREAATYAFGSILEGPSPEKLVPLVN 408 (657)
Q Consensus 343 ~~~r~~a~~~L~~l~~~~~~---------~~~~~l~~~l~~~l~-----~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~ 408 (657)
|..+.++.-+|..+++.+.. ..+|.+++++...+. ++++.+|.+++.+++..++-.. .-..+++
T Consensus 457 W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~--~~~~~l~ 534 (980)
T 3ibv_A 457 WQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFD--YESAAIP 534 (980)
T ss_dssp HHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGG--TCCTTHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHh--cCchhHH
Confidence 99999999999999997643 356778888777654 5678999999999999776542 1225788
Q ss_pred HHHHHHHH--HhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc--ch-------------
Q 006201 409 IALNFMLT--ALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--VP------------- 471 (657)
Q Consensus 409 ~i~~~l~~--~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~------------- 471 (657)
.+++.++. .+ .+++++||.+|+.++.++++.+.. ...+|.+.++..+-..|.- .+
T Consensus 535 ~~L~~ll~~~gl-~~~~~~V~~~a~~af~~f~~~~~~-------~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~ 606 (980)
T 3ibv_A 535 ALIEYFVGPRGI-HNTNERVRPRAWYLFYRFVKSIKK-------QVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNS 606 (980)
T ss_dssp HHHHHHTSTTTT-TCCCTTTHHHHHHHHHHHHHHTTT-------TCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHH
T ss_pred HHHHHHhccccc-cCCChhHHHHHHHHHHHHHHHhhH-------HhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhh
Confidence 88888888 88 889999999999999999999863 3457888888877666551 00
Q ss_pred -------HHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHh----hccccch-hhhHH-HHHHHHHHHHHHhc
Q 006201 472 -------NVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTV----THREDAG-ESRLR-TAAYETLNEVVRCS 538 (657)
Q Consensus 472 -------~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~----l~~~~~~-~~~~~-~~~~~al~~l~~~~ 538 (657)
.-+.....+++.++...+. +...-..++..+++.++.- ++....+ +...+ ...+.+++++++..
T Consensus 607 ~~~~~~~~~ql~L~eaig~li~~~~~---~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf 683 (980)
T 3ibv_A 607 SIRNSDFNSQLYLFETVGVLISSGNL---TPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGF 683 (980)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHSCC---CHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTS
T ss_pred hcccCCchHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccC
Confidence 1356677888888866421 1122334666666665443 4332211 11111 25678889998876
Q ss_pred ccc------cHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHH
Q 006201 539 TDE------TAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGL 612 (657)
Q Consensus 539 ~~~------~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~ 612 (657)
+.. +...+.+.++.++..++... .+ ..+|.+++.++..++..+|.+ +.|+++++++.
T Consensus 684 ~~~~~~~~p~~~~f~~~~~~il~~l~~~~------~~-----~~irea~~~~~~r~i~~lg~~------~~p~lp~~i~~ 746 (980)
T 3ibv_A 684 PARGSEEVAWLASFNKASDEIFLILDRMG------FN-----EDIRGAVRFTSGRIINVVGPD------MLPKVPQLISI 746 (980)
T ss_dssp CSCC-CCCSHHHHHHHHHHHHHHHHHHSC------CS-----HHHHHHHHHHHHHHTTTTHHH------HTTTHHHHHHH
T ss_pred CcccCCCCcHHHHHHHHHHHHHHHHHhcC------Cc-----HHHHHHHHHHHHHHHHHccHh------HHHHHHHHHHH
Confidence 532 34456677777766665431 11 247888999999999999999 99999999999
Q ss_pred HHHHHcccCCcchhhHHHHHHHHHHHhchhhhhcccccc
Q 006201 613 FLRVFAIRSATAHEEAMLAIGALAYATGLCHHRRCCWGL 651 (657)
Q Consensus 613 l~~~l~~~~~~v~~~~~~~l~~l~~~~g~~f~~y~~~~~ 651 (657)
++..++. .--.+.+.++|.++..+|.++.+++...+
T Consensus 747 ll~~~~~---~e~~~fL~l~~qli~~f~~~~~~~l~~ll 782 (980)
T 3ibv_A 747 LLNSIDM---NELVDVLSFISQLIHIYKDNMMEITNRML 782 (980)
T ss_dssp HHHHCCT---TTHHHHHHHHHHHHHHTTTTSHHHHHHHH
T ss_pred HHhcCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9965543 23467899999999999999888877654
No 35
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.70 E-value=4.8e-13 Score=153.92 Aligned_cols=583 Identities=11% Similarity=0.075 Sum_probs=334.3
Q ss_pred ChHHHHHHHHHHHHHHhc----CcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChH---
Q 006201 16 DGTVRKQAEESLKQYQEQ----NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSS--- 88 (657)
Q Consensus 16 d~~~r~~A~~~L~~~~~~----~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~--- 88 (657)
++.+|++.-..+..+... +||+++..|++.+.. ++..+..+..+|+...+.... .....++..
T Consensus 113 ~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~~---~~~~~~~~l~~L~~l~eev~~-------~~~~~~~~~r~~ 182 (1049)
T 3m1i_C 113 QKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS---SVNVCENNMIVLKLLSEEVFD-------FSAEQMTQAKAL 182 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHT-------SCTTTSCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHcc---ChHHHHHHHHHHHHHHHHHHH-------hcchhhhhHHHH
Confidence 367888888888776554 588899999888852 445566666666654421110 000011111
Q ss_pred --------HHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHhhhcCCC--CCchHHHHHHHhhcCCChhHHHHHHHHHHH
Q 006201 89 --------VKAQIKSFILKTLSS-PAHDARSTASQVVAKVAGIELPHK--QWPELIGALLSNIHQLPPHTKQATLETLGY 157 (657)
Q Consensus 89 --------~~~~i~~~ll~~l~~-~~~~vr~~aa~~l~~i~~~~~~~~--~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~ 157 (657)
....|...+.+++.+ ++..++..+..++....... |.+ ..+.+++.+++.+.+ ++..+..++.||..
T Consensus 183 ~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi-~~~~~~~~~ll~~l~~~~l~-~~~~~~~a~~~L~~ 260 (1049)
T 3m1i_C 183 HLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWI-PYRYIYETNILELLSTKFMT-SPDTRAITLKCLTE 260 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTS-CTHHHHSSSHHHHHHTHHHH-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhC-CHHHHhhhhHHHHHHHHhCC-CHhHHHHHHHHHHH
Confidence 122233334444543 34678888888887765532 210 125577777744332 68889999999999
Q ss_pred Hhhhccccc---cchhhHhHHHHHHHhcc----------------CCCCCCHHHHHHHHHHHHHHHhhchhhcCC----h
Q 006201 158 ICEEVSSDA---VEQDHVNKILTAVVQGM----------------NASESNNDVRLAATRALYNALGFAQANFSN----D 214 (657)
Q Consensus 158 i~~~~~~~~---l~~~~~~~l~~~l~~~l----------------~~~~~~~~vr~~al~~l~~~~~~~~~~~~~----~ 214 (657)
++..--+.. + ...+..+++.++..+ ...+.+.+.....++.+..+.......+.. .
T Consensus 261 i~~~~~~~~~~~~-~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 339 (1049)
T 3m1i_C 261 VSNLKIPQDNDLI-KRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLR 339 (1049)
T ss_dssp HHHCCCCTTCHHH-HHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGH
T ss_pred HHhCCCCcchhhH-HHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhH
Confidence 987621121 2 122223333222211 111345556566666666554422211111 1
Q ss_pred hhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHH------HHhhHHhHHHHHHHHHHHHhcCCh--------------
Q 006201 215 MERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTY------YEKLAPYIQDIFNITAKAVREDEE-------------- 274 (657)
Q Consensus 215 ~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~------~~~~~~~~~~l~~~~~~~~~~~~~-------------- 274 (657)
.....+++.++.....++.++...+++.|..+++.. ...+.+++..+++.++..+..+++
T Consensus 340 ~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~ 419 (1049)
T 3m1i_C 340 ELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVRE 419 (1049)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEEC
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHh
Confidence 112346677776666778899999999999998832 245667888888888776542211
Q ss_pred --------HHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHh
Q 006201 275 --------PVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIA 346 (657)
Q Consensus 275 --------~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r 346 (657)
..+..+-+++..++.. .....++.+.+.+-+.+. . ...+|..+
T Consensus 420 ~~~d~d~~~~~~~~~~~L~~l~~~----------------------~~~~~l~~v~~~l~~~l~----~---~~~~W~~~ 470 (1049)
T 3m1i_C 420 FVKESDTIQLYKSEREVLVYLTHL----------------------NVIDTEEIMISKLARQID----G---SEWSWHNI 470 (1049)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHH----------------------CHHHHHHHHHHHHHHHHT----S---SSCCHHHH
T ss_pred hhccchHHHHHHHHHHHHHHHHcc----------------------CHHHHHHHHHHHHHHHhC----C---CCCCHHHH
Confidence 0111222222222211 011122222233322222 1 12359999
Q ss_pred hhHHHHHHHHHhhcCC----CchhchHHHHHhhhc-----CcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHH
Q 006201 347 MAGGTCLGLVARTVGD----DIVPLVMPFVEENIT-----KQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTA 417 (657)
Q Consensus 347 ~~a~~~L~~l~~~~~~----~~~~~l~~~l~~~l~-----~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~ 417 (657)
.++..+++.++...+. .+++.+++.+..... ++...+|..+++++|..++-.. .-..+++.+++.++..
T Consensus 471 eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~--~~~~~l~~vl~~ll~~ 548 (1049)
T 3m1i_C 471 NTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLK--AHWNFLRTVILKLFEF 548 (1049)
T ss_dssp HHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHH--HCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHH
Confidence 9999999998876543 246777776655322 2345666678888888765321 1246788999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHhhhccCcC-CCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCC
Q 006201 418 LMQDPNNHVKDTTAWTLGRMFEFLHGSTL-ETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPS 495 (657)
Q Consensus 418 l~~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~ 495 (657)
+ .|++++||.+|++++.++++.+..... ..+....+|++.++..+...+.+ ...-......++..++...++ .
T Consensus 549 l-~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~----~ 623 (1049)
T 3m1i_C 549 M-HETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERS----V 623 (1049)
T ss_dssp T-TSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCS----H
T ss_pred h-cCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCC----H
Confidence 9 999999999999999999998652100 00112247889999988887775 344456677888888775421 1
Q ss_pred CCCchhHHHHHHHHHHhhcc----c----cc--hhhhHH--HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhh
Q 006201 496 SPLTPFFQEIVQALLTVTHR----E----DA--GESRLR--TAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEA 563 (657)
Q Consensus 496 ~~l~~~~~~i~~~L~~~l~~----~----~~--~~~~~~--~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 563 (657)
....+|+..+++.+...+.. . +. .....+ ...+++++.++...|..|.|++..+++.++..+......
T Consensus 624 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~~~~~~~~ 703 (1049)
T 3m1i_C 624 AERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSM 703 (1049)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23557777776665543321 0 10 011112 356788899999999999999988888776555432110
Q ss_pred ---hc--CCh---hHH--HHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHcccCCcch-hhHHHHH
Q 006201 564 ---QK--LSS---DER--EKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAH-EEAMLAI 632 (657)
Q Consensus 564 ---~~--~~~---~~~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~-~~~~~~l 632 (657)
.. .+. ..+ .....++..+...+........ .....+.||++++++.++..+.......| ..++.++
T Consensus 704 ~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~---~l~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~l~ 780 (1049)
T 3m1i_C 704 ISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKAR---NLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCM 780 (1049)
T ss_dssp HHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCS---CHHHHHHHTHHHHHHHHHHHHHHSCGGGCCTHHHHHH
T ss_pred HHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHH
Confidence 00 000 000 0011122222333333333221 11222568888899888888764322211 4589999
Q ss_pred HHHHHHhchhhhhccccc
Q 006201 633 GALAYATGLCHHRRCCWG 650 (657)
Q Consensus 633 ~~l~~~~g~~f~~y~~~~ 650 (657)
+.++..+|..+.||++..
T Consensus 781 ~~ii~~~~~~~~~~l~~i 798 (1049)
T 3m1i_C 781 TTVVEKVGHMIPQGVILI 798 (1049)
T ss_dssp HHHHHHHGGGCHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHH
Confidence 999999999999998753
No 36
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.68 E-value=6.4e-14 Score=149.26 Aligned_cols=392 Identities=13% Similarity=0.107 Sum_probs=274.9
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCc---------ccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhh
Q 006201 3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQNL---------PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQH 73 (657)
Q Consensus 3 ~~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~~---------~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~ 73 (657)
+.+..++..+.++|+++|..|...|..+..... .+.+..|+..+.++ .++.+|..|+..|.++.......
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRE-DFPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCT-TCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCHHH
Confidence 347788888999999999999999988855421 25678888888863 34899999999999976532110
Q ss_pred hHHHhhhhcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC---CCCchHHHHHHHhh-cCCChhHHH
Q 006201 74 RKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH---KQWPELIGALLSNI-HQLPPHTKQ 149 (657)
Q Consensus 74 ~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~---~~~~~l~~~l~~~l-~~~~~~~~~ 149 (657)
.. .-......+.|+..|.++++.+|..++.+|+.++...... -.-.+.++.|+..+ .+.++.++.
T Consensus 153 ~~-----------~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~ 221 (528)
T 4b8j_A 153 TK-----------VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLR 221 (528)
T ss_dssp HH-----------HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHH
T ss_pred HH-----------HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHH
Confidence 00 0011135567888999999999999999999998642110 01135788899988 667889999
Q ss_pred HHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhcc
Q 006201 150 ATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATL 229 (657)
Q Consensus 150 ~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~ 229 (657)
.++.+|..++... +..- ......++|.+.+.+. +.+++++..++.+|.++......... ......+++.+..++.
T Consensus 222 ~a~~~L~~L~~~~-~~~~-~~~~~~~l~~L~~lL~--~~~~~v~~~a~~aL~~l~~~~~~~~~-~~~~~g~v~~Lv~lL~ 296 (528)
T 4b8j_A 222 NATWTLSNFCRGK-PQPS-FEQTRPALPALARLIH--SNDEEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLL 296 (528)
T ss_dssp HHHHHHHHHHCSS-SCCC-HHHHTTHHHHHHHHTT--CCCHHHHHHHHHHHHHHTSSCHHHHH-HHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHcCC-CCCc-HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHcCCHHHHH-HHHHcCHHHHHHHHHc
Confidence 9999999998865 3322 3456778899999998 68899999999999997653221100 0001135677788888
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhHHhH-HHHHHHHHHHHhcC-ChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCC
Q 006201 230 SPEVKIRQAAFECLVAISSTYYEKLAPYI-QDIFNITAKAVRED-EEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSD 307 (657)
Q Consensus 230 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~~~~~~~~~-~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~ 307 (657)
++++.++..++.+|+.++...+......+ ..+++.+...+.+. ++.++..|+..+..++....+
T Consensus 297 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~-------------- 362 (528)
T 4b8j_A 297 HPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD-------------- 362 (528)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHH--------------
T ss_pred CCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHH--------------
Confidence 88999999999999999875554443333 25778888888887 899999999988888753211
Q ss_pred CchhhHHHhhh-hhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCch-----hchHHHHHhhhcCcch
Q 006201 308 IPCFYFIKHAL-PVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIV-----PLVMPFVEENITKQEW 381 (657)
Q Consensus 308 ~~~~~~~~~~l-~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~-----~~l~~~l~~~l~~~~~ 381 (657)
.....+ ..++|.++..+... +..+|..|..+|..++........ ..+++.+...+.++++
T Consensus 363 -----~~~~~~~~~~i~~L~~lL~~~---------~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~ 428 (528)
T 4b8j_A 363 -----QIQAVINAGIIGPLVNLLQTA---------EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDI 428 (528)
T ss_dssp -----HHHHHHHTTCHHHHHHHHHHS---------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred -----HHHHHHHCCCHHHHHHHHhcC---------CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCH
Confidence 111111 25677777766532 247888999999999876322111 2456677778888899
Q ss_pred hhHHHHHHHHHHhhcCCC---------CCcchHHHHH--HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Q 006201 382 RQREAATYAFGSILEGPS---------PEKLVPLVNI--ALNFMLTALMQDPNNHVKDTTAWTLGRMFEF 440 (657)
Q Consensus 382 ~~r~aal~~l~~i~~~~~---------~~~~~~~~~~--i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~ 440 (657)
.++..++.+|+.+..... ...+...+.+ .+..+.... .++++.|+..|.+++.++...
T Consensus 429 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~-~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 429 RIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQ-SHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGG-GCSSHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHH-cCCCHHHHHHHHHHHHHHCCC
Confidence 999999999999875321 0112222222 355666666 899999999999999887654
No 37
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.68 E-value=2.1e-14 Score=158.88 Aligned_cols=482 Identities=11% Similarity=0.070 Sum_probs=297.6
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhH
Q 006201 95 SFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNK 174 (657)
Q Consensus 95 ~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~ 174 (657)
..+++.|.+++..+|..++..+......... ...+|.|...+.++++.+|+.|+.+|..++........ ......
T Consensus 118 ~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~----~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~-i~~~~~ 192 (780)
T 2z6g_A 118 PTNVQRLAEPSQMLKHAVVNLINYQDDAELA----TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA-IMRSPQ 192 (780)
T ss_dssp --------CCSCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHH-HTTCHH
T ss_pred HHHHHHhcCccHHHHHHHHHHHHhhhHHHHH----hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHH-HHhccC
Confidence 5678888888889999999988876554332 46777888888888999999999999999875411100 011235
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhh
Q 006201 175 ILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKL 254 (657)
Q Consensus 175 l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 254 (657)
+++.++..+.+ +.++++|..|+.+|.++... .+. .........++.+..+++++++.++..++.+|..++...+...
T Consensus 193 ~i~~Lv~~L~~-~~d~~vr~~Aa~aL~~Ls~~-~~~-~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~ 269 (780)
T 2z6g_A 193 MVSAIVRTMQN-TNDVETARCTSGTLHNLSHH-REG-LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK 269 (780)
T ss_dssp HHHHHHHHHHH-CCCHHHHHHHHHHHHHHHTS-HHH-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHH
T ss_pred hHHHHHHHHcC-CCCHHHHHHHHHHHHHHhCC-chh-HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence 77888888874 45899999999999996532 111 0011112467888888888899999999999999998654433
Q ss_pred HHhH-HHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhc
Q 006201 255 APYI-QDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQE 333 (657)
Q Consensus 255 ~~~~-~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ 333 (657)
.... ...++.++..+.+.+..++..+...+..++....+.. ..+.. ...++.++..+...+
T Consensus 270 ~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~---------------~~i~~---~~~i~~Lv~lL~~~~ 331 (780)
T 2z6g_A 270 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK---------------LIILA---SGGPQALVNIMRTYT 331 (780)
T ss_dssp HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH---------------HHHHT---TTHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHH---------------HHHHH---cCCHHHHHHHHhcCC
Confidence 2232 3678888888888888888877766665553110000 01111 123555555554211
Q ss_pred CccccCCCcchHhhhHHHHHHHHHhhcC--CCc-hhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 006201 334 EDQDQDEGAWNIAMAGGTCLGLVARTVG--DDI-VPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIA 410 (657)
Q Consensus 334 ~d~~~d~~~~~~r~~a~~~L~~l~~~~~--~~~-~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i 410 (657)
....+..+..+|..++.... ..+ -.-.++.+...+.+.+...+..++.+|..++....... ....+
T Consensus 332 --------~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~---~~~~~ 400 (780)
T 2z6g_A 332 --------YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGL 400 (780)
T ss_dssp --------CHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCS---CCHHH
T ss_pred --------HHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhh---hhhhH
Confidence 11344466777877775321 111 12345667777777778888999999999987642211 13567
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc--c-hHHHHHHHHHHHHHHhh
Q 006201 411 LNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--V-PNVAEKACGALYFLAQG 487 (657)
Q Consensus 411 ~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~-~~v~~~a~~al~~l~~~ 487 (657)
++.++..+ .++++.+|..|+++|+.++..... ....-.-...++.|++.|.+ + ..++..|+.+|.+++..
T Consensus 401 i~~Lv~lL-~~~d~~vr~~A~~aL~~L~~~~~~------~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~ 473 (780)
T 2z6g_A 401 LGTLVQLL-GSDDINVVTCAAGILSNLTCNNYK------NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 473 (780)
T ss_dssp HHHHHHHT-TCSCHHHHHHHHHHHHHHTSSCHH------HHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCHH------HHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 89999999 999999999999999999774210 00000112467778877764 2 38999999999998653
Q ss_pred ccCCCCCCCCCc-h-hHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHHHhh-
Q 006201 488 FEDAISPSSPLT-P-FFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMV-MQLVPLIMMELHQTLEA- 563 (657)
Q Consensus 488 ~~~~~~~~~~l~-~-~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~- 563 (657)
..+ ..... . .-...++.|..++...+ +..++..++.+|+.+..... ....+. ..++|.+++.+...-..
T Consensus 474 ~~~----~~~~~~~v~~~~~l~~L~~lL~~~~--~~~v~~~A~~aL~nLa~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~ 546 (780)
T 2z6g_A 474 HQD----AEMAQNAVRLHYGLPVVVKLLHPPS--HWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQDT 546 (780)
T ss_dssp STT----HHHHHHHHHHTTCHHHHHHTTSTTC--CHHHHHHHHHHHHHHHSSHH-HHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred Cch----HHHHHHHHHHcCCHHHHHHHhcCCC--hHHHHHHHHHHHHHHhcCHH-HHHHHHHCCCHHHHHHHHHhcchhH
Confidence 110 00000 0 01234777888887654 34788899999999985322 111122 13566666666542100
Q ss_pred h-----------cCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHcccCCcchhhHHHHH
Q 006201 564 Q-----------KLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAI 632 (657)
Q Consensus 564 ~-----------~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~~~~l 632 (657)
. ..+... ...++..++.+++.++.. .. ++..+. -...++.++..+...++.++..+..++
T Consensus 547 ~~~aa~al~nq~~~~~~~---~~~v~~~a~~aL~~La~~--~~--~~~~l~--~~~~i~~Lv~lL~~~~~~v~~~a~~aL 617 (780)
T 2z6g_A 547 QRRTSMGGTQQQFVEGVR---MEEIVEACTGALHILARD--IH--NRIVIR--GLNTIPLFVQLLYSPIENIQRVAAGVL 617 (780)
T ss_dssp HHTTC------CCSTTCC---HHHHHHHHHHHHHHHTTS--HH--HHHHHH--HTCCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HHHHhhccccchhhcccC---hHHHHHHHHHHHHHHhcC--hh--hHHHHH--HCCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 0 000000 113555677788777531 11 111111 124677888888888888999998888
Q ss_pred HHHH
Q 006201 633 GALA 636 (657)
Q Consensus 633 ~~l~ 636 (657)
+.++
T Consensus 618 ~~L~ 621 (780)
T 2z6g_A 618 CELA 621 (780)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8876
No 38
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.67 E-value=1.9e-13 Score=145.86 Aligned_cols=465 Identities=15% Similarity=0.118 Sum_probs=292.1
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhcC--------cccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHh
Q 006201 7 QILLNAQSVDGTVRKQAEESLKQYQEQN--------LPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFEL 78 (657)
Q Consensus 7 ~~l~~~~s~d~~~r~~A~~~L~~~~~~~--------~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~ 78 (657)
.++.-+.++|+.+|..|...|..+...+ -++.+..|+..+.+ +.+..+|..|+..|++...... . .
T Consensus 21 ~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~-~~~~~~~~~a~~~L~~ls~~~~-~-~--- 94 (529)
T 1jdh_A 21 ELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTAGTLHNLSHHRE-G-L--- 94 (529)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTSHH-H-H---
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhc-CCCHHHHHHHHHHHHHHHcCch-h-H---
Confidence 3444445788999999999998775431 14678888888875 3478899999999998654211 0 0
Q ss_pred hhhcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCC---CCchHHHHHHHhhcCCChhHHHHHHHHH
Q 006201 79 VQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHK---QWPELIGALLSNIHQLPPHTKQATLETL 155 (657)
Q Consensus 79 ~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~---~~~~l~~~l~~~l~~~~~~~~~~~l~~l 155 (657)
..+ ......+.|++.+.++++.++..++.+|..++....... .-.+.+|.+.+.+.++++..+..+..+|
T Consensus 95 ----~~i---~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L 167 (529)
T 1jdh_A 95 ----LAI---FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 167 (529)
T ss_dssp ----HHH---HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred ----HHH---HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 000 111345678888999999999999999999998642100 0257889999999999999999998899
Q ss_pred HHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHH
Q 006201 156 GYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKI 235 (657)
Q Consensus 156 ~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~ 235 (657)
..++... ++.-..-.-...++.+++.+.+ ......+..+..++.++... +.. .........++.+..++.+++.++
T Consensus 168 ~~la~~~-~~~~~~i~~~~~i~~L~~ll~~-~~~~~~~~~a~~~L~~l~~~-~~~-~~~~~~~g~~~~L~~ll~~~~~~~ 243 (529)
T 1jdh_A 168 QILAYGN-QESKLIILASGGPQALVNIMRT-YTYEKLLWTTSRVLKVLSVC-SSN-KPAIVEAGGMQALGLHLTDPSQRL 243 (529)
T ss_dssp HHHHTTC-HHHHHHHHHTTHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTS-TTH-HHHHHHTTHHHHHHTTTTSSCHHH
T ss_pred HHHHhCC-HHHHHHHHHCCCHHHHHHHHHh-CChHHHHHHHHHHHHHHhcC-ccc-HHHHHHCCCHHHHHHHHhCCChHH
Confidence 8876532 1110000112346677777764 34556777788888776531 110 000001235777788888889999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHH
Q 006201 236 RQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIK 315 (657)
Q Consensus 236 ~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (657)
+..++.+|..++...+.. .....+++.+...+.+.+++++..+...+..++....+.. ..+.+
T Consensus 244 ~~~a~~~L~~l~~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~---------------~~~~~ 306 (529)
T 1jdh_A 244 VQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK---------------MMVCQ 306 (529)
T ss_dssp HHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHH---------------HHHHH
T ss_pred HHHHHHHHHHHhcCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH---------------HHHHH
Confidence 999999999988654332 1234677888888888899999999988888876321110 01111
Q ss_pred hhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCC------c-hhchHHHHHhhhcCcc-hhhHHHH
Q 006201 316 HALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDD------I-VPLVMPFVEENITKQE-WRQREAA 387 (657)
Q Consensus 316 ~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~------~-~~~l~~~l~~~l~~~~-~~~r~aa 387 (657)
...++.+++.+....+ .+.++..|..+|..++...+.. + -...+|.+...+.+++ |.+|..+
T Consensus 307 ---~~~v~~L~~ll~~~~~-------~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a 376 (529)
T 1jdh_A 307 ---VGGIEALVRTVLRAGD-------REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 376 (529)
T ss_dssp ---TTHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHH
T ss_pred ---cCChHHHHHHHHccCC-------HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHH
Confidence 1245666666653221 2478888889998886543321 1 1134566667777765 7999999
Q ss_pred HHHHHHhhcCCCCCcchHHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHH--HHhh-------------hccCcCCCccC
Q 006201 388 TYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGR--MFEF-------------LHGSTLETPII 451 (657)
Q Consensus 388 l~~l~~i~~~~~~~~~~~~~-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~--l~~~-------------~~~~~~~~~~~ 451 (657)
+++++.++.+. ....... ..+++.++..+ .++++.+|..++|++++ +... +..- ..
T Consensus 377 ~~~l~nl~~~~--~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L-----~~ 448 (529)
T 1jdh_A 377 VGLIRNLALCP--ANHAPLREQGAIPRLVQLL-VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHIL-----AR 448 (529)
T ss_dssp HHHHHHHTTSG--GGHHHHHHTTHHHHHHHHH-HHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHH-----TT
T ss_pred HHHHHHHhcCh--hhhHHHHHcCCHHHHHHHH-HHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHH-----hc
Confidence 99999999753 2223333 24788999999 88889999988888776 1110 0000 00
Q ss_pred Ccc-----cHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHH--HHHHHHHHhhccccchhhhH
Q 006201 452 NQG-----NCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQ--EIVQALLTVTHREDAGESRL 523 (657)
Q Consensus 452 ~~~-----~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~--~i~~~L~~~l~~~~~~~~~~ 523 (657)
... .-..+++.++..+.+ ++.++..|+.++.++... ......+. ..++.|..++.+.+ ..+
T Consensus 449 ~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~--------~~~~~~i~~~~~~~~L~~l~~~~~---~~v 517 (529)
T 1jdh_A 449 DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--------KEAAEAIEAEGATAPLTELLHSRN---EGV 517 (529)
T ss_dssp SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--------HHHHHHHHHTTCHHHHHHGGGCSS---HHH
T ss_pred CchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC--------HHHHHHHHHcCChHHHHHHhcCCC---HHH
Confidence 000 012345788888886 688999999999987632 00111111 33566777776553 678
Q ss_pred HHHHHHHHHHH
Q 006201 524 RTAAYETLNEV 534 (657)
Q Consensus 524 ~~~~~~al~~l 534 (657)
+..+..+|..+
T Consensus 518 ~~~a~~aL~~l 528 (529)
T 1jdh_A 518 ATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 88888888765
No 39
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.67 E-value=1.5e-13 Score=149.81 Aligned_cols=467 Identities=14% Similarity=0.106 Sum_probs=302.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhcCc--------ccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHH
Q 006201 6 TQILLNAQSVDGTVRKQAEESLKQYQEQNL--------PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFE 77 (657)
Q Consensus 6 ~~~l~~~~s~d~~~r~~A~~~L~~~~~~~~--------~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~ 77 (657)
..++.-+.++|+.+|..|...|..+...+. ++.+..|+..+.+ +.+.++|..|+..|+++..... ..
T Consensus 17 ~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~-~~~~~~~~~A~~~L~~Ls~~~~-~~--- 91 (644)
T 2z6h_A 17 PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTAGTLHNLSHHRE-GL--- 91 (644)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHTTSHH-HH---
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcChh-hH---
Confidence 344444557899999999999998876421 3677888888886 3578999999999987554311 00
Q ss_pred hhhhcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCC---CCchHHHHHHHhhcCCChhHHHHHHHH
Q 006201 78 LVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHK---QWPELIGALLSNIHQLPPHTKQATLET 154 (657)
Q Consensus 78 ~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~---~~~~l~~~l~~~l~~~~~~~~~~~l~~ 154 (657)
. .+ ......+.|++.|.++++.+|..++.+|..++....+.. .-...+|.|++.+.++++..+..++.+
T Consensus 92 --~---~i---~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~ 163 (644)
T 2z6h_A 92 --L---AI---FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDC 163 (644)
T ss_dssp --H---HH---HTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHH
T ss_pred --H---HH---HHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHH
Confidence 0 00 011345678888999999999999999999998742200 025789999999999998888888889
Q ss_pred HHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHH
Q 006201 155 LGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVK 234 (657)
Q Consensus 155 l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~ 234 (657)
|..++... ++.-..-.-...++.+++.+.+ .....++..++.+|.++... +... ........++.+..++.+.+.+
T Consensus 164 L~~La~~~-~~~~~~i~~~g~v~~Lv~lL~~-~~~~~~~~~a~~~L~nLs~~-~~~~-~~l~~~g~l~~L~~ll~~~~~~ 239 (644)
T 2z6h_A 164 LQILAYGN-QESKLIILASGGPQALVNIMRT-YTYEKLLWTTSRVLKVLSVC-SSNK-PAIVEAGGMQALGLHLTDPSQR 239 (644)
T ss_dssp HHHHHTTC-HHHHHHHHHTTHHHHHHHHHTT-CCCHHHHHHHHHHHHHHTTC-TTHH-HHHHHTTHHHHHHTTTTCSCHH
T ss_pred HHHHHhcC-cHHHHHHHHcCChHHHHHHHHc-CChHHHHHHHHHHHHHHhcC-cccH-HHHHHCCCHHHHHHHHhcCCHH
Confidence 98887532 1110001123457777888875 34567888888888886531 1100 0000113567778888888899
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHH
Q 006201 235 IRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFI 314 (657)
Q Consensus 235 ~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (657)
++..++.+|..++...+.. .....+++.++..+.+.+++++..+...+..++....+.. ..+.
T Consensus 240 ~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~---------------~~v~ 302 (644)
T 2z6h_A 240 LVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK---------------MMVC 302 (644)
T ss_dssp HHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH---------------HHHH
T ss_pred HHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH---------------HHHH
Confidence 9999999999998654332 2234678888888888899999999988888876321100 0111
Q ss_pred HhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCC------c-hhchHHHHHhhhcCcc-hhhHHH
Q 006201 315 KHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDD------I-VPLVMPFVEENITKQE-WRQREA 386 (657)
Q Consensus 315 ~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~------~-~~~l~~~l~~~l~~~~-~~~r~a 386 (657)
+ ...++.++..+....+ .+.++..|..+|..++...++. + -...++.+.+.+.+++ |.+|.+
T Consensus 303 ~---~g~v~~Lv~lL~~~~~-------~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~ 372 (644)
T 2z6h_A 303 Q---VGGIEALVRTVLRAGD-------REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 372 (644)
T ss_dssp H---TTHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHH
T ss_pred H---cCCHHHHHHHHHccCC-------cHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHH
Confidence 1 1346666666653221 1467888899999887533320 1 1234566667777664 899999
Q ss_pred HHHHHHHhhcCCCCCcchHHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHH----------------------HHHhhhcc
Q 006201 387 ATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLG----------------------RMFEFLHG 443 (657)
Q Consensus 387 al~~l~~i~~~~~~~~~~~~~-~~i~~~l~~~l~~d~~~~vr~~a~~~l~----------------------~l~~~~~~ 443 (657)
++.+++.++.+. ......+ ..+++.++..+ .+.++.+|..+.|+++ .++....
T Consensus 373 a~~~L~nLa~~~--~~~~~i~~~~~i~~Lv~lL-~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~- 448 (644)
T 2z6h_A 373 TVGLIRNLALCP--ANHAPLREQGAIPRLVQLL-VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH- 448 (644)
T ss_dssp HHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHH-HHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHH-
T ss_pred HHHHHHHHccCH--HHHHHHHHcCCHHHHHHHH-hccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHH-
Confidence 999999998753 2222222 24678888877 6665555555555444 4433211
Q ss_pred CcCCCccCCccc--HHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHH--HHHHHHHHhhccccc
Q 006201 444 STLETPIINQGN--CQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQ--EIVQALLTVTHREDA 518 (657)
Q Consensus 444 ~~~~~~~~~~~~--~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~--~i~~~L~~~l~~~~~ 518 (657)
.... -..+++.|+..+.+ ++.++..|+.+|.+++..- .....+. ..++.|..++.+.+
T Consensus 449 --------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~--------~~~~~i~~~g~l~~L~~ll~~~~- 511 (644)
T 2z6h_A 449 --------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK--------EAAEAIEAEGATAPLTELLHSRN- 511 (644)
T ss_dssp --------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSH--------HHHHHHHHTTCHHHHHHHTTCSC-
T ss_pred --------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCH--------HHHHHHHHcCChhHHHHHHcCCC-
Confidence 0111 12457888888886 6889999999999987420 1111221 23566777776553
Q ss_pred hhhhHHHHHHHHHHHHHHhcc
Q 006201 519 GESRLRTAAYETLNEVVRCST 539 (657)
Q Consensus 519 ~~~~~~~~~~~al~~l~~~~~ 539 (657)
..+|..+..+|+.+....+
T Consensus 512 --~~vr~~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 512 --EGVATYAAAVLFRMSEDKP 530 (644)
T ss_dssp --HHHHHHHHHHHHHHTTTSC
T ss_pred --HHHHHHHHHHHHHHhccCc
Confidence 6899999999999987665
No 40
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.67 E-value=5.3e-14 Score=155.66 Aligned_cols=469 Identities=14% Similarity=0.105 Sum_probs=301.9
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhcC--------cccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHh
Q 006201 7 QILLNAQSVDGTVRKQAEESLKQYQEQN--------LPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFEL 78 (657)
Q Consensus 7 ~~l~~~~s~d~~~r~~A~~~L~~~~~~~--------~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~ 78 (657)
.++.-+.++|+.+|..|...|..+.... .++.+..|+..|.+ +.+..+|..|+..|+++.... .. .
T Consensus 154 ~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~-~~d~~vr~~Aa~aL~~Ls~~~-~~-~--- 227 (780)
T 2z6g_A 154 ELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTSGTLHNLSHHR-EG-L--- 227 (780)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHTSH-HH-H---
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcC-CCCHHHHHHHHHHHHHHhCCc-hh-H---
Confidence 3344445788999999999998876531 25788889999986 348899999999999854321 10 0
Q ss_pred hhhcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCC---CCchHHHHHHHhhcCCChhHHHHHHHHH
Q 006201 79 VQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHK---QWPELIGALLSNIHQLPPHTKQATLETL 155 (657)
Q Consensus 79 ~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~---~~~~l~~~l~~~l~~~~~~~~~~~l~~l 155 (657)
..-......+.|+..|.++++.+|..++.+|..++....... .-...++.+++.+.+++..++..++.++
T Consensus 228 -------~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL 300 (780)
T 2z6g_A 228 -------LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 300 (780)
T ss_dssp -------HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred -------HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 000112345678889999999999999999999998642100 0247889999999998988899998888
Q ss_pred HHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHH
Q 006201 156 GYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKI 235 (657)
Q Consensus 156 ~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~ 235 (657)
..++... ++.-..-.-...++.++..+.+ ......+..++.++.++... ..... .......++.+..++.+.+.++
T Consensus 301 ~~La~~~-~e~~~~i~~~~~i~~Lv~lL~~-~~~~~~~~~a~~aL~~Ls~~-~~~~~-~i~~~g~l~~Ll~lL~~~~~~~ 376 (780)
T 2z6g_A 301 QILAYGN-QESKLIILASGGPQALVNIMRT-YTYEKLLWTTSRVLKVLSVC-SSNKP-AIVEAGGMQALGLHLTDPSQRL 376 (780)
T ss_dssp HHHHTTC-HHHHHHHHTTTHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHTS-TTHHH-HHHHTTHHHHHGGGTTCSCHHH
T ss_pred HHHhcCC-hHHHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhhcC-hHHHH-HHHHhchHHHHHHHHcCCchHH
Confidence 8776432 1110000112346677777774 34455666778887776532 11100 0001235677888888888999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHH
Q 006201 236 RQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIK 315 (657)
Q Consensus 236 ~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (657)
+..++.+|..++...+.. .....+++.+...+.+.++.++..++..+..++....+.. ..+.+
T Consensus 377 ~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~---------------~~i~~ 439 (780)
T 2z6g_A 377 VQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK---------------MMVCQ 439 (780)
T ss_dssp HHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHH---------------HHHHT
T ss_pred HHHHHHHHHHHhccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH---------------HHHHH
Confidence 999999999988655332 1235678888888888999999999988888875321100 00111
Q ss_pred hhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCC------c-hhchHHHHHhhhcCcc-hhhHHHH
Q 006201 316 HALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDD------I-VPLVMPFVEENITKQE-WRQREAA 387 (657)
Q Consensus 316 ~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~------~-~~~l~~~l~~~l~~~~-~~~r~aa 387 (657)
...++.+++.+....+ ...+|..|..+|..++...++. + ....++.+.+.+.+++ |.+|.++
T Consensus 440 ---~g~i~~Lv~lL~~~~~-------~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A 509 (780)
T 2z6g_A 440 ---VGGIEALVRTVLRAGD-------REDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 509 (780)
T ss_dssp ---TTHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHH
T ss_pred ---CCCHHHHHHHHHccCC-------HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHH
Confidence 1345666666653211 0167888889998886533221 1 1234566666776655 7999999
Q ss_pred HHHHHHhhcCCCCCcchHHH-HHHHHHHHHHhcCCCcHH----------------------HHHHHHHHHHHHHhhhccC
Q 006201 388 TYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNNH----------------------VKDTTAWTLGRMFEFLHGS 444 (657)
Q Consensus 388 l~~l~~i~~~~~~~~~~~~~-~~i~~~l~~~l~~d~~~~----------------------vr~~a~~~l~~l~~~~~~~ 444 (657)
+++|+.++.+. ....... ..+++.++..+ .+.++. ++..++.+|+.++..-.
T Consensus 510 ~~aL~nLa~~~--~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~-- 584 (780)
T 2z6g_A 510 VGLIRNLALCP--ANHAPLREQGAIPRLVQLL-VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIH-- 584 (780)
T ss_dssp HHHHHHHHSSH--HHHHHHHHTTHHHHHHHHH-HHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHH--
T ss_pred HHHHHHHhcCH--HHHHHHHHCCCHHHHHHHH-HhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChh--
Confidence 99999998642 2222222 23567777777 554444 45555556665553210
Q ss_pred cCCCccCCccc-HHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHH--HHHHHHHhhccccchh
Q 006201 445 TLETPIINQGN-CQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQE--IVQALLTVTHREDAGE 520 (657)
Q Consensus 445 ~~~~~~~~~~~-~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~--i~~~L~~~l~~~~~~~ 520 (657)
..... -..+++.|+..+.+ ++.++..|+.+|.+++.. ......+.. .++.|..++.+.+
T Consensus 585 ------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~--------~~~~~~i~~~g~i~~L~~Ll~~~~--- 647 (780)
T 2z6g_A 585 ------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--------KEAAEAIEAEGATAPLTELLHSRN--- 647 (780)
T ss_dssp ------HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS--------HHHHHHHHHTTCHHHHHHGGGCSC---
T ss_pred ------hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--------HHHHHHHHHCCCHHHHHHHHcCCC---
Confidence 00001 13457888888886 689999999999998742 112223332 4667778777654
Q ss_pred hhHHHHHHHHHHHHHHhcccc
Q 006201 521 SRLRTAAYETLNEVVRCSTDE 541 (657)
Q Consensus 521 ~~~~~~~~~al~~l~~~~~~~ 541 (657)
..+|..+..+|..+....+..
T Consensus 648 ~~Vr~~A~~aL~~l~~~~~~~ 668 (780)
T 2z6g_A 648 EGVATYAAAVLFRMSEDKPQD 668 (780)
T ss_dssp HHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHHHHHHcCChHh
Confidence 689999999999999877644
No 41
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.67 E-value=3.3e-13 Score=145.39 Aligned_cols=507 Identities=12% Similarity=0.051 Sum_probs=303.9
Q ss_pred HhcCCChHHHHHHHHHHHHHHh--cCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChH
Q 006201 11 NAQSVDGTVRKQAEESLKQYQE--QNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSS 88 (657)
Q Consensus 11 ~~~s~d~~~r~~A~~~L~~~~~--~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~ 88 (657)
.+.++|...|+.+-..|--+.- .+........++.+.+ .+...|.++-.++..+.+. .++
T Consensus 42 ~l~~~~~~~k~~~l~kli~~~~~G~d~~~~~~~vik~~~s--~~~~~Krl~Yl~~~~~~~~----------------~~e 103 (618)
T 1w63_A 42 SFREEDNTYRCRNVAKLLYMHMLGYPAHFGQLECLKLIAS--QKFTDKRIGYLGAMLLLDE----------------RQD 103 (618)
T ss_dssp HHTTTCTTTHHHHHHHHHHHHHTTCCCGGGHHHHHHHHHS--SSHHHHHHHHHHHHHHCCC----------------CHH
T ss_pred HhhCCCHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHcC--CchHHHHHHHHHHHHHhCC----------------CcH
Confidence 4444444455555444432221 1223333344455553 4777888888877776652 355
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccc
Q 006201 89 VKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVE 168 (657)
Q Consensus 89 ~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~ 168 (657)
....+.+.+.+.|.++++.+|..|..+|+.+...+ ..+.+++.+...+.+.++.+|..|+.++..++... |+.+
T Consensus 104 ~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~----~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p~~v- 177 (618)
T 1w63_A 104 VHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSE----MCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-PELM- 177 (618)
T ss_dssp HHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-GGGG-
T ss_pred HHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-hHHH-
Confidence 55667788889999999999999999999988533 34678999999999999999999999999999876 5544
Q ss_pred hhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchh---hcCChhhHHHHHHHHHhhcc-----------CCcHH
Q 006201 169 QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQA---NFSNDMERDYIMRVVCEATL-----------SPEVK 234 (657)
Q Consensus 169 ~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~---~~~~~~~~~~il~~l~~~~~-----------~~~~~ 234 (657)
..+++.+...+. |.++.|+.+|+.++..+...-++ .+. ...+.+++.+..... ..++-
T Consensus 178 ----~~~~~~l~~lL~--D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 249 (618)
T 1w63_A 178 ----EMFLPATKNLLN--EKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPF 249 (618)
T ss_dssp ----GGGGGGTTTSTT--CCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHH
T ss_pred ----HHHHHHHHHHhC--CCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCCh
Confidence 345666777777 88999999999999987643211 110 011233444333221 23566
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHH---hcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchh
Q 006201 235 IRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAV---REDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCF 311 (657)
Q Consensus 235 ~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 311 (657)
.+..+++++..+....++.- ..+..++..+.... ++.+..+...++..+..+... .
T Consensus 250 ~q~~il~~L~~l~~~~~~~~-~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~--------------------~ 308 (618)
T 1w63_A 250 LQVRILRLLRILGRNDDDSS-EAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE--------------------S 308 (618)
T ss_dssp HHHHHHHHHHHHTTTCHHHH-HTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC--------------------H
T ss_pred HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC--------------------H
Confidence 66778888888776544321 11112222222111 112334555555544333210 0
Q ss_pred hHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHH
Q 006201 312 YFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAF 391 (657)
Q Consensus 312 ~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l 391 (657)
... ...++.+...+... +..+|..|..+|..++...+..+ ....+.+...+.+++..+|..|+.++
T Consensus 309 ~l~----~~a~~~L~~~L~~~---------d~~vr~~aL~~L~~i~~~~p~~~-~~~~~~i~~~l~d~d~~Ir~~alelL 374 (618)
T 1w63_A 309 GLR----VLAINILGRFLLNN---------DKNIRYVALTSLLKTVQTDHNAV-QRHRSTIVDCLKDLDVSIKRRAMELS 374 (618)
T ss_dssp HHH----HHHHHHHHHHHTCS---------STTTHHHHHHHHHHHHHHHHHHH-GGGHHHHHHGGGSSCHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHHhCC---------CCchHHHHHHHHHHHHhhCHHHH-HHHHHHHHHHccCCChhHHHHHHHHH
Confidence 111 12233333333311 13689999999999988755433 23344566777888999999999999
Q ss_pred HHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-c
Q 006201 392 GSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-V 470 (657)
Q Consensus 392 ~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~ 470 (657)
..++... .+ ..+++.++..+ .+.+..+|..+..++++++..+. +.....++.+++.+.+ .
T Consensus 375 ~~l~~~~---nv----~~iv~eL~~~l-~~~d~e~r~~~v~~I~~la~k~~-----------~~~~~~v~~ll~lL~~~~ 435 (618)
T 1w63_A 375 FALVNGN---NI----RGMMKELLYFL-DSCEPEFKADCASGIFLAAEKYA-----------PSKRWHIDTIMRVLTTAG 435 (618)
T ss_dssp HHHCCSS---ST----HHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHSSC-----------CCHHHHHHHHHHHHHHTG
T ss_pred HHHcccc---cH----HHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHhC-----------ccHHHHHHHHHHHHHhcc
Confidence 9998753 23 44566777777 77889999999999999999764 2235556666666664 3
Q ss_pred hHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccc---------
Q 006201 471 PNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDE--------- 541 (657)
Q Consensus 471 ~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~--------- 541 (657)
..++..++..+..++... ..+. ..++..|...+.+... ...+...++.++|.........
T Consensus 436 ~~v~~~~~~~l~~ii~~~-------p~l~---~~~v~~L~~~l~~~~~-~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~ 504 (618)
T 1w63_A 436 SYVRDDAVPNLIQLITNS-------VEMH---AYTVQRLYKAILGDYS-QQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQ 504 (618)
T ss_dssp GGSCSSHHHHHHHHHHHS-------CSTH---HHHHHHHHHHHHHCCS-CSHHHHHHHHHHHHHHHHHTTCCCSSSCCCC
T ss_pred chhHHHHHHHHHHHHhcC-------hhHH---HHHHHHHHHHHhcccc-cHHHHHHHHHHHhhhHHHhcccccccccccC
Confidence 445556677777777652 1232 3345555565553211 1233346888888887754320
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHcccC
Q 006201 542 TAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRS 621 (657)
Q Consensus 542 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~ 621 (657)
..| ..+.+.+...++.. .++. .+|..++.++..+....+ + ..+.+..++.. ...+.+
T Consensus 505 ~~~--~~~~~~l~~~l~~~-------~~~~----~vr~~~lta~~Kl~~~~~-~------~~~~l~~~L~~---~~~~~d 561 (618)
T 1w63_A 505 VTE--DEVLDILESVLISN-------MSTS----VTRGYALTAIMKLSTRFT-C------TVNRIKKVVSI---YGSSID 561 (618)
T ss_dssp CCH--HHHHHHHHHHHHST-------TCCH----HHHHHHHHHHHHHHTTCS-S------CHHHHHHHHHH---HTTCSC
T ss_pred CCH--HHHHHHHHHHHhcc-------CCCH----HHHHHHHHHHHHHHHhCc-c------hHHHHHHHHHH---hcCCCC
Confidence 111 11122222222110 0111 467777777777776543 2 33333333333 344557
Q ss_pred CcchhhHHHHHHHHHH
Q 006201 622 ATAHEEAMLAIGALAY 637 (657)
Q Consensus 622 ~~v~~~~~~~l~~l~~ 637 (657)
.+||+-|...+.-+..
T Consensus 562 ~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 562 VELQQRAVEYNALFKK 577 (618)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcC
Confidence 7999999988877654
No 42
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.66 E-value=9.4e-14 Score=149.66 Aligned_cols=464 Identities=11% Similarity=0.071 Sum_probs=305.9
Q ss_pred CCChHHHHHHHHHHHHHHhc---------CcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhccc
Q 006201 14 SVDGTVRKQAEESLKQYQEQ---------NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLS 84 (657)
Q Consensus 14 s~d~~~r~~A~~~L~~~~~~---------~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~ 84 (657)
+++.+..-.|...+..+..- ..++++..++..+.+ .+..++..|...+.+...... ....
T Consensus 258 ~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s--~~~~~q~~A~~al~~aa~~~~---------~R~~ 326 (810)
T 3now_A 258 APDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATT--DDELQQRVACECLIAASSKKD---------KAKA 326 (810)
T ss_dssp SCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHS--SCHHHHHHHHHHHHHHTTSHH---------HHHT
T ss_pred cCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCcH---------HHHH
Confidence 45555555555555543221 126888888888886 478888888888888554311 1111
Q ss_pred CChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhh---cCC-----CCCchHHHHHHHhhcCC--ChhHHHHHHHH
Q 006201 85 LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIE---LPH-----KQWPELIGALLSNIHQL--PPHTKQATLET 154 (657)
Q Consensus 85 l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~---~~~-----~~~~~l~~~l~~~l~~~--~~~~~~~~l~~ 154 (657)
+.. ..+ +.|...+.++++.+|..++.+|.+++... .+. +.-..+++.+...+.++ +...++.++.+
T Consensus 327 I~~---~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~Avea 402 (810)
T 3now_A 327 LCE---QGV-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADG 402 (810)
T ss_dssp THH---HHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHH
T ss_pred HHH---cCc-HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 222 234 67777788778899999999999998532 111 11246788999999887 88999999999
Q ss_pred HHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhh-----------cCC-------h--
Q 006201 155 LGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQAN-----------FSN-------D-- 214 (657)
Q Consensus 155 l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~-----------~~~-------~-- 214 (657)
|.++.... .....-..-...+|.++..++ ..+..++..|+.+|.++....+.. +.. +
T Consensus 403 LayLS~~~-~vk~~lv~d~g~Ip~LV~LL~--s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld 479 (810)
T 3now_A 403 LAYLTLDA-ECKEKLIEDKASIHALMDLAR--GGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELD 479 (810)
T ss_dssp HHHHTTSH-HHHHHHHHCHHHHHHHHHHHH--TTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHH
T ss_pred HHHHhCCc-HHHHHHHHccchHHHHHHHhC--CCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccc
Confidence 99997754 111100112467888888888 467889999999999988632100 000 0
Q ss_pred ---hhH---H-----HHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHH-HHHHHHHHHHhcCChHHHHHHHH
Q 006201 215 ---MER---D-----YIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIE 282 (657)
Q Consensus 215 ---~~~---~-----~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~ 282 (657)
... . -.++.+..++.+++++++..++++|..++.. ++.....+. ..++.++..+.+.++..+..|..
T Consensus 480 ~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~ 558 (810)
T 3now_A 480 DVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEGTEKGKRHATQ 558 (810)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHH
Confidence 000 1 1466777888889999999999999999854 333323333 57888888888888889999998
Q ss_pred HHHHHhHHH-HHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcC
Q 006201 283 FWSSVCDEE-IDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVG 361 (657)
Q Consensus 283 ~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~ 361 (657)
.+..++... +... +........+|.|+..+.. + . .-..+..|..+|..++...+
T Consensus 559 AL~nL~~~~~p~~~-----------------~~~~~~~~aIppLv~LL~~-~------~-~~l~~~eAl~AL~NLa~~~d 613 (810)
T 3now_A 559 ALARIGITINPEVS-----------------FSGQRSLDVIRPLLNLLQQ-D------C-TALENFESLMALTNLASMNE 613 (810)
T ss_dssp HHHHHHHHSCHHHH-----------------TTTHHHHHTHHHHHHTTST-T------S-CHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHhcCCChhhh-----------------hcchhhhcHHHHHHHHhCC-C------C-cHHHHHHHHHHHHHHhcCCH
Confidence 888887532 1110 0000112356777766542 1 0 11223457778887776431
Q ss_pred C---Cch-hchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHH--HHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 006201 362 D---DIV-PLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVN--IALNFMLTALMQDPNNHVKDTTAWTLG 435 (657)
Q Consensus 362 ~---~~~-~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~--~i~~~l~~~l~~d~~~~vr~~a~~~l~ 435 (657)
+ .+. .-.++.+.+.+.+++..+|.+|+.+++.++.+ ++....++. ..++.++..+ ..++..+|.+|+|+|+
T Consensus 614 ~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~--~~~~~~~v~~~g~l~~Lv~LL-~s~d~~vq~~Aa~ALa 690 (810)
T 3now_A 614 SVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS--EDVIKMFEGNNDRVKFLALLC-EDEDEETATACAGALA 690 (810)
T ss_dssp HHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS--HHHHHHHHSSSSHHHHHHHGG-GCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--hHHHHHHHhccCcHHHHHHHh-cCCCHHHHHHHHHHHH
Confidence 1 111 12345555666677889999999999999975 344444442 4788999999 8899999999999999
Q ss_pred HHHhhhccCcCCCccCCcccH--HHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhH--HHHHHHHH
Q 006201 436 RMFEFLHGSTLETPIINQGNC--QQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFF--QEIVQALL 510 (657)
Q Consensus 436 ~l~~~~~~~~~~~~~~~~~~~--~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~--~~i~~~L~ 510 (657)
.++..... .....+ ...++.|+..+.+ +..++..|++++.+++..- .....++ ...++.|.
T Consensus 691 nLt~~s~~-------~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s-------~e~~~~l~e~G~i~~L~ 756 (810)
T 3now_A 691 IITSVSVK-------CCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAG-------EEIAKKLFETDIMELLS 756 (810)
T ss_dssp HHHHHCHH-------HHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTC-------HHHHHHHHTSTHHHHHT
T ss_pred HHhCCCHH-------HHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCC-------HHHHHHHHHCCCHHHHH
Confidence 99984220 112222 3678888888885 7899999999999998631 1112222 25678888
Q ss_pred HhhccccchhhhHHHHHHHHHHHHHHhc
Q 006201 511 TVTHREDAGESRLRTAAYETLNEVVRCS 538 (657)
Q Consensus 511 ~~l~~~~~~~~~~~~~~~~al~~l~~~~ 538 (657)
.++...+..+.++.+.++++|..+.+.-
T Consensus 757 ~LL~~~d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 757 GLGQLPDDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp TSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence 8886653224678888999998887653
No 43
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.65 E-value=3e-15 Score=141.51 Aligned_cols=212 Identities=10% Similarity=0.131 Sum_probs=169.0
Q ss_pred CCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhh
Q 006201 362 DDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQ-DPNNHVKDTTAWTLGRMFEF 440 (657)
Q Consensus 362 ~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~-d~~~~vr~~a~~~l~~l~~~ 440 (657)
.++++.+.+.+.+.+.+.+|+.|.+|+.+|..+++++. ......+..+++.+.+.+ . |+++.||.+|+.+++.++..
T Consensus 10 ~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~-~~~~~~~~~i~~~L~~~l-~kd~~~~V~~~a~~~l~~la~~ 87 (242)
T 2qk2_A 10 VDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHP-KLENGEYGALVSALKKVI-TKDSNVVLVAMAGKCLALLAKG 87 (242)
T ss_dssp BCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCS-SBCCCCCHHHHHHHHHHH-HHCSCHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCC-CCCCCCHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHH
Confidence 34555566666677889999999999999999988752 322233467788888888 7 99999999999999999998
Q ss_pred hccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccch
Q 006201 441 LHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAG 519 (657)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~ 519 (657)
+.. ...+|...++|.++..+.| ++.||..|+.++..++... .++.+++.+...+++.+
T Consensus 88 l~~-------~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~------------~~~~ll~~l~~~l~~~~-- 146 (242)
T 2qk2_A 88 LAK-------RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST------------SLEAQQESIVESLSNKN-- 146 (242)
T ss_dssp HGG-------GGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS------------CHHHHHHHHHHHTTCSC--
T ss_pred Hhh-------hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHcCCC--
Confidence 762 3468999999999999998 6899999999999998742 25778888888887653
Q ss_pred hhhHHHHHHHHHHHHHHhccc--ccHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 006201 520 ESRLRTAAYETLNEVVRCSTD--ETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQ 597 (657)
Q Consensus 520 ~~~~~~~~~~al~~l~~~~~~--~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 597 (657)
..+|..++..++.++...+. .+.+|+..++|.+.+.++. .. ..+|..+.++++.++..+|.+.
T Consensus 147 -~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D---------~~----~~VR~~A~~~l~~l~~~vg~~~- 211 (242)
T 2qk2_A 147 -PSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNE---------PD----PTVRDSSAEALGTLIKLMGDKA- 211 (242)
T ss_dssp -HHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTS---------SC----HHHHHHHHHHHHHHHHHHCHHH-
T ss_pred -hHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcC---------CC----hHHHHHHHHHHHHHHHHcCHHH-
Confidence 68999999999999888753 4678999999998887742 11 2578899999999999999865
Q ss_pred hhhHhhHHHHHHHHHHHH
Q 006201 598 TKYVFMQYADQMMGLFLR 615 (657)
Q Consensus 598 ~~~~~~~~~~~i~~~l~~ 615 (657)
|.+|++.+-+.-..
T Consensus 212 ----~~~~l~~L~~~~~~ 225 (242)
T 2qk2_A 212 ----VTPLLADVDPLKMA 225 (242)
T ss_dssp ----HGGGGTTSCHHHHH
T ss_pred ----HHHHHHhcCHHHHH
Confidence 77777665433333
No 44
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.65 E-value=4.9e-13 Score=144.14 Aligned_cols=558 Identities=12% Similarity=0.101 Sum_probs=335.5
Q ss_pred CChHHHHHHHHHHHHHHhcCccc--------HHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhccc--
Q 006201 15 VDGTVRKQAEESLKQYQEQNLPG--------FLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLS-- 84 (657)
Q Consensus 15 ~d~~~r~~A~~~L~~~~~~~~~~--------~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~-- 84 (657)
.|+++.-.|-..|.++++.+... -+..++.++.. .+.+.-..+..++...++.-....+ +....
T Consensus 62 ~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 135 (810)
T 3now_A 62 KDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFMRVLDQ--KHENCVSTAQFCLQTILNALSGLKN----KPDSKPD 135 (810)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHC--CSTTHHHHHHHHHHHHHHHHHTCCS----STTCCCC
T ss_pred CchhHHHHHHHHHHHHHhccHHHHHHHHHHcCHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHhcccc----ccccCCc
Confidence 67899999999999998874211 12345566664 3555555666666665543221100 11111
Q ss_pred --CChHHHHH---HHHHHHHhcCCC--ChHHHHHHHHHHHHHHhhhcCCCCCchH------HHHHHHhhcC-C-------
Q 006201 85 --LDSSVKAQ---IKSFILKTLSSP--AHDARSTASQVVAKVAGIELPHKQWPEL------IGALLSNIHQ-L------- 143 (657)
Q Consensus 85 --l~~~~~~~---i~~~ll~~l~~~--~~~vr~~aa~~l~~i~~~~~~~~~~~~l------~~~l~~~l~~-~------- 143 (657)
+-++.+.. +...|+..+.+. ....|..+-..+.+.+.+.- ..|++- +..++..... +
T Consensus 136 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~ 213 (810)
T 3now_A 136 KELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYTA--LEWAERLVEIRGLCRLLDVCSELEDYKYESA 213 (810)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTCTT--TTHHHHHHHTTHHHHHHHHHTCCSSSCCSSC
T ss_pred HHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHHHHHhCCccc--cccccchhhHhhHHHHHHHHhcCcccccccc
Confidence 11233333 334555666665 37888888888777664431 134321 2223333222 1
Q ss_pred ---ChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHH
Q 006201 144 ---PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYI 220 (657)
Q Consensus 144 ---~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i 220 (657)
.+..|..+..++..+.+.+..+.- ++....++..+++..-. ..+.+-+..|+.++..++.-.++.-........+
T Consensus 214 ~~~~~~~r~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~ 291 (810)
T 3now_A 214 MDITGSSSTIASVCLARIYENMYYDEA-KARFTDQIDEYIKDKLL-APDMESKVRVTVAITALLNGPLDVGNQVVAREGI 291 (810)
T ss_dssp CCCCTTHHHHHHHHHHHHHHTCCSHHH-HHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTH
T ss_pred CCCChhHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHhc-cCChHhHHHHHHHHHHHhcCCHHHHHHHHhccch
Confidence 347888899999999888743322 34455555554443322 5667777888899888776433211000001236
Q ss_pred HHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhH-HHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcC
Q 006201 221 MRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYI-QDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYG 299 (657)
Q Consensus 221 l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~ 299 (657)
++.+..++.+++..++..++++++..+.. ++ ...++ ..-++.+...+++.++.++..|+..+..++....
T Consensus 292 v~~li~Ll~s~~~~~q~~A~~al~~aa~~-~~-~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~------- 362 (810)
T 3now_A 292 LQMILAMATTDDELQQRVACECLIAASSK-KD-KAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGG------- 362 (810)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHTTS-HH-HHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTT-------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcCC-cH-HHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccc-------
Confidence 67778888888999999999999997765 32 22222 2223777777777778888877766655543110
Q ss_pred CCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcC--CCch--hchHHHHHhh
Q 006201 300 GDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVG--DDIV--PLVMPFVEEN 375 (657)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~--~~~~--~~l~~~l~~~ 375 (657)
.+... ..+-...+.++++.+.+.+.....| .+.|..|.++|..++.... ..+. .-++|.+.+.
T Consensus 363 ----~d~~~--~~~~~g~i~~Lv~~l~~lL~~~~~d-------~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~L 429 (810)
T 3now_A 363 ----QDAAI--RPFGDGAALKLAEACRRFLIKPGKD-------KDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDL 429 (810)
T ss_dssp ----TTTSC--CSSTTTHHHHHHHHHHHHHHCSSCC-------SSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHH
T ss_pred ----cCccc--cchhhccHHHHHHHHHHHhcCCCCC-------HHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHH
Confidence 00000 1122233556777777777643111 2467788888888875432 1111 2344444455
Q ss_pred hcCcchhhHHHHHHHHHHhhcCCCCC---------------------cc--hHHHH---------HHHHHHHHHhcCCCc
Q 006201 376 ITKQEWRQREAATYAFGSILEGPSPE---------------------KL--VPLVN---------IALNFMLTALMQDPN 423 (657)
Q Consensus 376 l~~~~~~~r~aal~~l~~i~~~~~~~---------------------~~--~~~~~---------~i~~~l~~~l~~d~~ 423 (657)
+.+++...++.++++|+.++.+.... .. ..+.. ..+|.++..+ .+++
T Consensus 430 L~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL-~s~s 508 (810)
T 3now_A 430 ARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALA-KTES 508 (810)
T ss_dssp HHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHH-TCCC
T ss_pred hCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHH-cCCC
Confidence 55677789999999999999764111 00 01111 4688999999 9999
Q ss_pred HHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCc-hh
Q 006201 424 NHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLT-PF 501 (657)
Q Consensus 424 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~-~~ 501 (657)
+.+|..|+|+|++++..-. ....-.-..++|.|+..|.+ .+.++..|+++|.+++..-.+ ...+. ..
T Consensus 509 ~~vqe~Aa~aL~NLA~d~~-------~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p----~~~~~~~~ 577 (810)
T 3now_A 509 HNSQELIARVLNAVCGLKE-------LRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINP----EVSFSGQR 577 (810)
T ss_dssp HHHHHHHHHHHHHHHTSHH-------HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH----HHHTTTHH
T ss_pred HHHHHHHHHHHHHHcCCHH-------HHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh----hhhhcchh
Confidence 9999999999999986421 01111224578899998886 678999999999999865221 01111 11
Q ss_pred HHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHH-HHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHH
Q 006201 502 FQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVM-QLVPLIMMELHQTLEAQKLSSDEREKQNEIQGL 580 (657)
Q Consensus 502 ~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 580 (657)
....++.|+.++.... +...+..++.+|+.++....+.....+. ..+|.+++.+.. .. . .++..
T Consensus 578 ~~~aIppLv~LL~~~~--~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s--------~~-~----~Vq~~ 642 (810)
T 3now_A 578 SLDVIRPLLNLLQQDC--TALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLME--------DH-L----YLTRA 642 (810)
T ss_dssp HHHTHHHHHHTTSTTS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS--------CC-T----THHHH
T ss_pred hhcHHHHHHHHhCCCC--cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC--------CC-H----HHHHH
Confidence 2457889999987432 1233457889999998765322222222 245555555432 11 1 35667
Q ss_pred HHHHHHHHHHHhCCCcchhhHhhHHH--HHHHHHHHHHHcccCCcchhhHHHHHHHHHHH
Q 006201 581 LCGCLQVIIQKLGSSEQTKYVFMQYA--DQMMGLFLRVFAIRSATAHEEAMLAIGALAYA 638 (657)
Q Consensus 581 ~~~~l~~l~~~~~~~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~v~~~~~~~l~~l~~~ 638 (657)
++++++.++.. .+. ...+. ...++.++..+...+..+++.|..+++.++..
T Consensus 643 A~~~L~NLa~~--~~~-----~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~ 695 (810)
T 3now_A 643 AAQCLCNLVMS--EDV-----IKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV 695 (810)
T ss_dssp HHHHHHHHTTS--HHH-----HHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC--hHH-----HHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC
Confidence 89999988762 221 33344 24788888999888888999999999999873
No 45
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.63 E-value=1.2e-13 Score=150.44 Aligned_cols=476 Identities=11% Similarity=0.060 Sum_probs=298.5
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC---CCCchHHHHHHHhhcCC-ChhHHHHHHHHHHHHhhhccccccc
Q 006201 93 IKSFILKTLSSPAHDARSTASQVVAKVAGIELPH---KQWPELIGALLSNIHQL-PPHTKQATLETLGYICEEVSSDAVE 168 (657)
Q Consensus 93 i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~---~~~~~l~~~l~~~l~~~-~~~~~~~~l~~l~~i~~~~~~~~l~ 168 (657)
..+.|+..|.++++.+|..++.+|+.++...... -.-+..++.+++.+.+. ++..+..++.+|..++... +...
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~--~~~~ 92 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR--EGLL 92 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH--HHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh--hhHH
Confidence 3456778888899999999999999999764210 02347889999998765 7889999999999877643 1110
Q ss_pred hhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHH
Q 006201 169 QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISS 248 (657)
Q Consensus 169 ~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~ 248 (657)
.-.-...++.++..+. +.++.++..|+.+|.++....+.... .......++.+..++++++++++..++.+|..++.
T Consensus 93 ~i~~~g~i~~Lv~lL~--~~~~~v~~~A~~aL~nL~~~~~~~~~-~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 93 AIFKSGGIPALVKMLG--SPVDSVLFYAITTLHNLLLHQEGAKM-AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 169 (644)
T ss_dssp HHHTTTHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHSTTHHH-HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHh--CCCHHHHHHHHHHHHHHHhCcchhHH-HHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHh
Confidence 1112357888888888 57899999999999998764221110 00012467888888888888899889999998885
Q ss_pred HHHHhhHHhH-HHHHHHHHHHHhcCC-hHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHH
Q 006201 249 TYYEKLAPYI-QDIFNITAKAVREDE-EPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLL 326 (657)
Q Consensus 249 ~~~~~~~~~~-~~l~~~~~~~~~~~~-~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 326 (657)
..++.-.... ...++.++..+.+.+ +..+..+...+..++.... ....+++ ...++.++
T Consensus 170 ~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~----------------~~~~l~~---~g~l~~L~ 230 (644)
T 2z6h_A 170 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS----------------NKPAIVE---AGGMQALG 230 (644)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTT----------------HHHHHHH---TTHHHHHH
T ss_pred cCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcc----------------cHHHHHH---CCCHHHHH
Confidence 4333211111 145666666666543 4566677777666664210 0001111 13566666
Q ss_pred HHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCC-CchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchH
Q 006201 327 ETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD-DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVP 405 (657)
Q Consensus 327 ~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~ 405 (657)
..+... +-.++..+..+|..++...+. .....+++.+...+.+.++.+|+.++.+|+.++.+. ......
T Consensus 231 ~ll~~~---------~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~-~~~~~~ 300 (644)
T 2z6h_A 231 LHLTDP---------SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN-YKNKMM 300 (644)
T ss_dssp TTTTCS---------CHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHH
T ss_pred HHHhcC---------CHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHH
Confidence 655421 136788888999999876532 334467777778888889999999999999998752 121111
Q ss_pred HH-HHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHhhhccCcCCCccCCc-ccHHHHHHHHHHHccc--chHHHHHHHH
Q 006201 406 LV-NIALNFMLTALMQDP--NNHVKDTTAWTLGRMFEFLHGSTLETPIINQ-GNCQQIISVLLQSMKD--VPNVAEKACG 479 (657)
Q Consensus 406 ~~-~~i~~~l~~~l~~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~-~~~~~il~~l~~~l~d--~~~v~~~a~~ 479 (657)
.. ...++.++..+ .+. ++.||..|+++|++++...+.. ..... -.....++.|++.|.+ ++.++..|++
T Consensus 301 v~~~g~v~~Lv~lL-~~~~~~~~v~~~a~~aL~nL~~~~~~~----~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~ 375 (644)
T 2z6h_A 301 VCQVGGIEALVRTV-LRAGDREDITEPAICALRHLTSRHQEA----EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 375 (644)
T ss_dssp HHHTTHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHTSSSTTH----HHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHH-HccCCcHHHHHHHHHHHHHHhcCCchH----HHHHHHHHHccChHHHHHHhCccCchHHHHHHHH
Confidence 11 23577888877 542 3799999999999997532100 00000 1113568899998885 3689999999
Q ss_pred HHHHHHhhccCCCCCCCCCchhH-HHHHHHHHHhhcccc-------------------chhhhHHHHHHHHHHHHHHhcc
Q 006201 480 ALYFLAQGFEDAISPSSPLTPFF-QEIVQALLTVTHRED-------------------AGESRLRTAAYETLNEVVRCST 539 (657)
Q Consensus 480 al~~l~~~~~~~~~~~~~l~~~~-~~i~~~L~~~l~~~~-------------------~~~~~~~~~~~~al~~l~~~~~ 539 (657)
+|.+++..-. ...... ..+++.|+.++...+ ..+..++..+..+|..++....
T Consensus 376 ~L~nLa~~~~-------~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~ 448 (644)
T 2z6h_A 376 LIRNLALCPA-------NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH 448 (644)
T ss_dssp HHHHHTTSGG-------GHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHccCHH-------HHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999875311 111111 245555655554321 0124566677777777765331
Q ss_pred cccHHHH--HHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHH--HHHHHHHH
Q 006201 540 DETAPMV--MQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYAD--QMMGLFLR 615 (657)
Q Consensus 540 ~~~~~~~--~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~--~i~~~l~~ 615 (657)
. ...+ ...++.+++.+.. . +. .++..++.++..++.. ++ ....+. ..++.+..
T Consensus 449 ~--~~~l~~~~~i~~Lv~lL~~--------~-~~----~v~~~a~~aL~~l~~~--~~------~~~~i~~~g~l~~L~~ 505 (644)
T 2z6h_A 449 N--RIVIRGLNTIPLFVQLLYS--------P-IE----NIQRVAAGVLCELAQD--KE------AAEAIEAEGATAPLTE 505 (644)
T ss_dssp H--HHHHHHTTCHHHHHHHTTC--------S-CH----HHHHHHHHHHHHHHTS--HH------HHHHHHHTTCHHHHHH
T ss_pred H--HHHHHhCCcHHHHHHHHcC--------C-CH----HHHHHHHHHHHHHHcC--HH------HHHHHHHcCChhHHHH
Confidence 1 1111 1244555554431 1 11 3455677777776531 11 222222 24667788
Q ss_pred HHcccCCcchhhHHHHHHHHHH
Q 006201 616 VFAIRSATAHEEAMLAIGALAY 637 (657)
Q Consensus 616 ~l~~~~~~v~~~~~~~l~~l~~ 637 (657)
.+..+++++|+.|..+++.++.
T Consensus 506 ll~~~~~~vr~~A~~aL~~l~~ 527 (644)
T 2z6h_A 506 LLHSRNEGVATYAAAVLFRMSE 527 (644)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHHHHHHHhc
Confidence 8888889999999999988876
No 46
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.61 E-value=6.2e-12 Score=134.87 Aligned_cols=439 Identities=15% Similarity=0.144 Sum_probs=261.8
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhc--CCCChhHHHHHHHHHhhhcccchhhhHHHhhhhc
Q 006201 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVN--DEKPVESRKLAGLILKNALDAKEQHRKFELVQRW 82 (657)
Q Consensus 5 l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~--~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~ 82 (657)
+.++++.+.|+|...|+.+.-.+..+.+.++ +.+...++.+.. .+.++.+|.+|...+.+..
T Consensus 76 ~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~-e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~--------------- 139 (621)
T 2vgl_A 76 HMEAVNLLSSNRYTEKQIGYLFISVLVNSNS-ELIRLINNAIKNDLASRNPTFMGLALHCIANVG--------------- 139 (621)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHSCCCCH-HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHccCCc-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC---------------
Confidence 5667777778888888888888888766543 333333333321 1357888888888888743
Q ss_pred ccCChHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHhhhcCCCCCc--hHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 006201 83 LSLDSSVKAQIKSFILKTL--SSPAHDARSTASQVVAKVAGIELPHKQWP--ELIGALLSNIHQLPPHTKQATLETLGYI 158 (657)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l--~~~~~~vr~~aa~~l~~i~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~~~l~~l~~i 158 (657)
.++..+.+.+.+.+++ .+.++.||+.|+.++.++.+.. | +..+ ++++.+.+.+.+.++.++.+|+.++..+
T Consensus 140 ---~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~-p-~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i 214 (621)
T 2vgl_A 140 ---SREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS-P-DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTL 214 (621)
T ss_dssp ---CHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC-G-GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC-h-hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHH
Confidence 3455667777888898 8889999999999999999965 5 2333 7888889999999999999999999998
Q ss_pred hhhccccccchhhHhHHHHHHHhccCC------------------------------CCCCHHHHHHHHHHHHHHHhhch
Q 006201 159 CEEVSSDAVEQDHVNKILTAVVQGMNA------------------------------SESNNDVRLAATRALYNALGFAQ 208 (657)
Q Consensus 159 ~~~~~~~~l~~~~~~~l~~~l~~~l~~------------------------------~~~~~~vr~~al~~l~~~~~~~~ 208 (657)
+..- ++.+ .+....++..+.+.+.. ...+++.+....+.+..++....
T Consensus 215 ~~~~-~~~~-~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~ 292 (621)
T 2vgl_A 215 AQKN-PEEF-KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQ 292 (621)
T ss_dssp HHHC-HHHH-TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHhC-hHHH-HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 8754 3222 11222222222111110 01233444333333333221100
Q ss_pred h--------------------------hcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHH--HhhHHhHHH
Q 006201 209 A--------------------------NFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYY--EKLAPYIQD 260 (657)
Q Consensus 209 ~--------------------------~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~~ 260 (657)
+ ............+.+..++.+.++++|-.++..+..++...+ ..+.+|.
T Consensus 293 ~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~-- 370 (621)
T 2vgl_A 293 EPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHI-- 370 (621)
T ss_dssp SCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTH--
T ss_pred cCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHH--
Confidence 0 000111122344555666666778888888888888876654 3344443
Q ss_pred HHHHHHHHHh-cCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccC
Q 006201 261 IFNITAKAVR-EDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQD 339 (657)
Q Consensus 261 l~~~~~~~~~-~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d 339 (657)
..++.++. +.|..+|..+++.+..++... .+..++..+...+...+
T Consensus 371 --~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~-------------------------Nv~~Iv~eL~~yl~~~d------ 417 (621)
T 2vgl_A 371 --ETVINALKTERDVSVRQRAVDLLYAMCDRS-------------------------NAQQIVAEMLSYLETAD------ 417 (621)
T ss_dssp --HHHHHHHTTCCCHHHHHHHHHHHHHHCCHH-------------------------HHHHHHHHHHHHHHHCC------
T ss_pred --HHHHHHhccCCCHhHHHHHHHHHHHHcChh-------------------------hHHHHHHHHHHHHHhcC------
Confidence 34445667 788889999998888877531 12344555555554321
Q ss_pred CCcchHhhhHHHHHHHHHhhcCCC---chhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHH
Q 006201 340 EGAWNIAMAGGTCLGLVARTVGDD---IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLT 416 (657)
Q Consensus 340 ~~~~~~r~~a~~~L~~l~~~~~~~---~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~ 416 (657)
..+|..+...+..++..++.. ++..++.++.. ..-.+...++..+..+.... .....+ .+..+..
T Consensus 418 ---~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~----~~~~v~~ev~~~l~~ii~~~--~~~~~~---~~~~l~~ 485 (621)
T 2vgl_A 418 ---YSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRI----AGDYVSEEVWYRVIQIVINR--DDVQGY---AAKTVFE 485 (621)
T ss_dssp ---HHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHH----HGGGSCSHHHHHHHHHHGGG--CSCHHH---HHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh----hcccchHHHHHHHHHHHhCC--hhHHHH---HHHHHHH
Confidence 256777778888888777533 34445544433 22223344445555554432 223322 3455667
Q ss_pred HhcCCCc--HHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCC
Q 006201 417 ALMQDPN--NHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAIS 493 (657)
Q Consensus 417 ~l~~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~ 493 (657)
.+ .++. ..+-..++|++|.++..+.+. +... -..++..+...+.+ ++.||..+..++..+....
T Consensus 486 ~l-~~~~~~~~li~~~~wilGEy~~~~~~~----~~~~---p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~----- 552 (621)
T 2vgl_A 486 AL-QAPACHENLVKVGGYILGEFGNLIAGD----PRSS---PLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLF----- 552 (621)
T ss_dssp HH-TSSSCCHHHHHHHHHHHHHHTHHHHSS----TTSC---HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHC-----
T ss_pred HH-cCccchHHHHHHHHHHhcchHHHhccc----CCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHC-----
Confidence 77 6654 346667789999999987521 0011 12456666666665 6899999999999887642
Q ss_pred CCCCCchhHHHHHHHHHHhhcc--ccchhhhHHHHHHHHHHHH
Q 006201 494 PSSPLTPFFQEIVQALLTVTHR--EDAGESRLRTAAYETLNEV 534 (657)
Q Consensus 494 ~~~~l~~~~~~i~~~L~~~l~~--~~~~~~~~~~~~~~al~~l 534 (657)
|-..+.+..+++.... .. +.++|..+...+.-+
T Consensus 553 ------p~~~~~i~~~l~~~~~~~~~--d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 553 ------PEVKATIQDVLRSDSQLKNA--DVELQQRAVEYLRLS 587 (621)
T ss_dssp ------GGGHHHHHHHHSSHHHHSCS--SHHHHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHH
Confidence 1122333444433322 22 467888777766554
No 47
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.59 E-value=7.1e-13 Score=139.73 Aligned_cols=384 Identities=14% Similarity=0.130 Sum_probs=261.8
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhc--Ccc-------cHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhH
Q 006201 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQ--NLP-------GFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRK 75 (657)
Q Consensus 5 l~~~l~~~~s~d~~~r~~A~~~L~~~~~~--~~~-------~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~ 75 (657)
+.++++.+.|.|.+.+.+|.+.+.++-.. +|| |.++.|+++|.+ +.++.++..|+..|.|+....
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~-~~~~~lq~~Aa~aL~nias~~----- 132 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK-TDCSPIQFESAWALTNIASGT----- 132 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHTSC-----
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCC-CCCHHHHHHHHHHHHHHhcCC-----
Confidence 67889999999999999999999887543 333 578889999976 457899999999999976432
Q ss_pred HHhhhhcccCChHHHH-----HHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCC----CCchHHHHHHHhhcCCCh-
Q 006201 76 FELVQRWLSLDSSVKA-----QIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHK----QWPELIGALLSNIHQLPP- 145 (657)
Q Consensus 76 ~~~~~~~~~l~~~~~~-----~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~----~~~~l~~~l~~~l~~~~~- 145 (657)
++.+. ...+.|++.|.+++..+|..++.+|+.|+... +.. .-...++.+...+.+++.
T Consensus 133 -----------~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~-~~~r~~v~~~G~i~~Ll~lL~~~~~~ 200 (510)
T 3ul1_B 133 -----------SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG-SAFRDLVIKHGAIDPLLALLAVPDLS 200 (510)
T ss_dssp -----------HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTCHHHHHHHTCSSCGG
T ss_pred -----------HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-HHHHHHHHHcCChHHHHHHHHhccch
Confidence 22222 24567888999999999999999999998642 100 113567778888876543
Q ss_pred ----hHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHH
Q 006201 146 ----HTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIM 221 (657)
Q Consensus 146 ----~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il 221 (657)
.....+..++..++....+..- ......++|.+...+. +.+.+++..|+.+|..+...-.+... ......++
T Consensus 201 ~~~~~~~~~a~~~L~nl~~~~~~~~~-~~~~~~~lp~L~~LL~--~~~~~v~~~A~~aL~~L~~~~~~~~~-~i~~~g~i 276 (510)
T 3ul1_B 201 TLACGYLRNLTWTLSNLCRNKNPAPP-LDAVEQILPTLVRLLH--HNDPEVLADSCWAISYLTDGPNERIE-MVVKKGVV 276 (510)
T ss_dssp GSCHHHHHHHHHHHHHHHCCCSSCCC-HHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTSSCHHHHH-HHHTTTCH
T ss_pred hhhHHHHHHHHHHHHHHhhcccchhH-HHHHHhHHHHHHHHHh--cCCHHHHHHHHHHHHHHhhchhhhHH-HHHhcccc
Confidence 3456777888888775422211 3456788999999998 78899999999999987643211100 00001246
Q ss_pred HHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHH-HHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCC
Q 006201 222 RVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGG 300 (657)
Q Consensus 222 ~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~ 300 (657)
+.+..++.+++..++..++.+++.++..........+. ..++.+...+.+.++.++..+...+..++....+
T Consensus 277 ~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~------- 349 (510)
T 3ul1_B 277 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD------- 349 (510)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHH-------
T ss_pred hhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHH-------
Confidence 67777888889999999999999987655433222222 4555666677888899999999888888753211
Q ss_pred CCCCCCCCchhhHHHhhh-hhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCch-----hchHHHHHh
Q 006201 301 DFSGDSDIPCFYFIKHAL-PVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIV-----PLVMPFVEE 374 (657)
Q Consensus 301 ~~~~~~~~~~~~~~~~~l-~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~-----~~l~~~l~~ 374 (657)
....+. ..++|.++..+.. .++.+|+.|..+|..++.....+.. .-.++.+.+
T Consensus 350 ------------~~~~v~~~g~i~~Lv~lL~~---------~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~ 408 (510)
T 3ul1_B 350 ------------QIQQVVNHGLVPFLVGVLSK---------ADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN 408 (510)
T ss_dssp ------------HHHHHHHTTHHHHHHHHHHS---------SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHH
T ss_pred ------------HHHHHHhcCCHHHHHHHHcC---------CCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHH
Confidence 111111 2467777776653 1257899999999998875322111 234556667
Q ss_pred hhcCcchhhHHHHHHHHHHhhcCC---C-CCcchHHHHH--HHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 006201 375 NITKQEWRQREAATYAFGSILEGP---S-PEKLVPLVNI--ALNFMLTALMQDPNNHVKDTTAWTLGRMFE 439 (657)
Q Consensus 375 ~l~~~~~~~r~aal~~l~~i~~~~---~-~~~~~~~~~~--i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~ 439 (657)
.+.+++++++..++.+|..|.... . .+.+...+.+ .+..+.... .+++..|+..|...+.+|..
T Consensus 409 LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq-~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 409 LLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ-RHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGG-GCSSHHHHHHHHHHHHHHCC
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHCC
Confidence 788889999999999998876521 1 0111122222 345555555 78999999999999877653
No 48
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.57 E-value=1.4e-13 Score=146.00 Aligned_cols=365 Identities=12% Similarity=0.134 Sum_probs=237.6
Q ss_pred CchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhch
Q 006201 129 WPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQ 208 (657)
Q Consensus 129 ~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 208 (657)
....++.+++.+.++++..+..++..+..+...-....+..-.-..++|.|++.+.. +.++.++..|+.+|.++....+
T Consensus 74 ~~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~-~~~~~~q~~Aa~aL~nia~~~~ 152 (529)
T 3tpo_A 74 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK-TDCSPIQFESAWALTNIASGTS 152 (529)
T ss_dssp SSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTC-TTCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcC-CCCHHHHHHHHHHHHHHHcCCH
Confidence 345678899999999999999999988887643311112112235678999999974 5678999999999999876432
Q ss_pred hhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHH-HHHHHHHHHHhcCCh-----HHHHHHHH
Q 006201 209 ANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEE-----PVALQAIE 282 (657)
Q Consensus 209 ~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~-----~v~~~a~~ 282 (657)
.... .....-.++.+..++.+++.+++..++.+|+.++...++.-...+. ..++.++..+...+. .+...+..
T Consensus 153 ~~~~-~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~ 231 (529)
T 3tpo_A 153 EQTK-AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 231 (529)
T ss_dssp HHHH-HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHH
T ss_pred HHHH-HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHH
Confidence 2110 0001235777888899999999999999999998765443222222 356666666654432 23344444
Q ss_pred HHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCC
Q 006201 283 FWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD 362 (657)
Q Consensus 283 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~ 362 (657)
.+..++.... +...+ .....++|.+...+...+ ..++..|..+|..++....+
T Consensus 232 ~L~nl~~~~~----------------~~~~~--~~~~~~lp~L~~LL~~~~---------~~v~~~a~~aL~~l~~~~~~ 284 (529)
T 3tpo_A 232 TLSNLCRNKN----------------PAPPL--DAVEQILPTLVRLLHHND---------PEVLADSCWAISYLTDGPNE 284 (529)
T ss_dssp HHHHHHCCCT----------------TCCCH--HHHHHHHHHHHHHTTSSC---------HHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHhccc----------------chhhH--HHHhhHHHHHHHHhcCCc---------HHHHHHHHHHHHHhhhhhhh
Confidence 4444543210 00011 112356677776664211 25677788888888764321
Q ss_pred C----chhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 006201 363 D----IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRM 437 (657)
Q Consensus 363 ~----~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l 437 (657)
. .-.-+++.+...+.++++.++..++.+++.++.+. .......+ ...++.++..+ .++++.+|..|+|+|+++
T Consensus 285 ~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~-~~~~~~i~~~g~l~~L~~LL-~~~~~~i~~~a~~aL~nl 362 (529)
T 3tpo_A 285 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNI 362 (529)
T ss_dssp HHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGGGHHHHT-TCSSHHHHHHHHHHHHHH
T ss_pred hHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccc-hHHHHHHhhcccHHHHHHHH-cCCCHHHHHHHHHHHHHH
Confidence 1 11235566666778889999999999999998763 12111112 24677888899 999999999999999999
Q ss_pred HhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhH--HHHHHHHHHhhc
Q 006201 438 FEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFF--QEIVQALLTVTH 514 (657)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~--~~i~~~L~~~l~ 514 (657)
+..-.. ....-.-..++|.++..+.+ +..++..|+++|.+++..... . -..++ ..+++.|+.++.
T Consensus 363 ~~~~~~------~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~-----~-~~~~l~~~g~i~~L~~LL~ 430 (529)
T 3tpo_A 363 TAGRQD------QIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTV-----E-QIVYLVHCGIIEPLMNLLS 430 (529)
T ss_dssp HTSCHH------HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH-----H-HHHHHHHTTCHHHHHHGGG
T ss_pred hcccHH------HHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCH-----H-HHHHHHHCcCHHHHHHHhc
Confidence 874321 01111123578888888886 689999999999999864211 1 11122 245788899997
Q ss_pred cccchhhhHHHHHHHHHHHHHHhcc
Q 006201 515 REDAGESRLRTAAYETLNEVVRCST 539 (657)
Q Consensus 515 ~~~~~~~~~~~~~~~al~~l~~~~~ 539 (657)
..+ ..++..++++|..+.+...
T Consensus 431 ~~d---~~i~~~~L~aL~nil~~~~ 452 (529)
T 3tpo_A 431 AKD---TKIIQVILDAISNIFQAAE 452 (529)
T ss_dssp CSC---HHHHHHHHHHHHHHHHHHH
T ss_pred CCC---HHHHHHHHHHHHHHHHHhH
Confidence 664 6777789999999887654
No 49
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.57 E-value=8.7e-10 Score=123.42 Aligned_cols=601 Identities=11% Similarity=0.071 Sum_probs=329.8
Q ss_pred HHHHHHHhcC------CChHHHHHHHHHHHHHHhc----CcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhh
Q 006201 5 VTQILLNAQS------VDGTVRKQAEESLKQYQEQ----NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHR 74 (657)
Q Consensus 5 l~~~l~~~~s------~d~~~r~~A~~~L~~~~~~----~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~ 74 (657)
+.+.+....+ +++.++.+.-+.+..+.+. +||+++..+++.+.+ ++..+..+..+|+...+...+..
T Consensus 108 Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~---~~~~~~~~L~IL~~L~EEV~d~~ 184 (1073)
T 3gjx_A 108 VVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT---SESLCQNNMVILKLLSEEVFDFS 184 (1073)
T ss_dssp HHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHhcc
Confidence 4555555432 2467777777777776554 688899999888864 34556666777766544311100
Q ss_pred HHHhhhhcccCChHHHHHHHH-----------HHHHhcCC-CChHHHHHHHHHHHHHHhhhcCCC--CCchHHHHH-HHh
Q 006201 75 KFELVQRWLSLDSSVKAQIKS-----------FILKTLSS-PAHDARSTASQVVAKVAGIELPHK--QWPELIGAL-LSN 139 (657)
Q Consensus 75 ~~~~~~~~~~l~~~~~~~i~~-----------~ll~~l~~-~~~~vr~~aa~~l~~i~~~~~~~~--~~~~l~~~l-~~~ 139 (657)
. ..++.+-+..+++ .+...+.+ .++.+...+-.+++.+.... |-+ .-+++++.+ ...
T Consensus 185 ~-------~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI-~i~~i~~~~ll~~L~~~~ 256 (1073)
T 3gjx_A 185 S-------GQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWI-PLGYIFETKLISTLIYKF 256 (1073)
T ss_dssp H-------HHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTS-CTHHHHSSSHHHHHHHHT
T ss_pred c-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhc-CHHHhccchHHHHHHHHh
Confidence 0 0122222222222 22333432 35666666777777766653 211 115688877 455
Q ss_pred hcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHh----ccC-----------CCCCCHHHHHHHHHHHHHHH
Q 006201 140 IHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQ----GMN-----------ASESNNDVRLAATRALYNAL 204 (657)
Q Consensus 140 l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~----~l~-----------~~~~~~~vr~~al~~l~~~~ 204 (657)
+. ++..|..|+.||..|+..- .+.. ...+..+++.+++ .+. ..+.+.+.-..-...+..+.
T Consensus 257 L~--~~~~r~aA~dcL~eIv~k~-~~~~-~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~ 332 (1073)
T 3gjx_A 257 LN--VPMFRNVSLKCLTEIAGVS-VSQY-EEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFL 332 (1073)
T ss_dssp SS--SHHHHHHHHHHHHHHHHSC-SGGG-HHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHH
T ss_pred cC--ChHHHHHHHHHHHHHHhcc-ccch-HHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHH
Confidence 53 5688999999999998752 1222 2222333332221 111 01222333333334444433
Q ss_pred hhchhhc-CChhhHH---HHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHh-------------------------hH
Q 006201 205 GFAQANF-SNDMERD---YIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEK-------------------------LA 255 (657)
Q Consensus 205 ~~~~~~~-~~~~~~~---~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-------------------------~~ 255 (657)
....... ..+..+. ..++.+......++.++.+.++..|..+....+.. +.
T Consensus 333 e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~ 412 (1073)
T 3gjx_A 333 KEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYL 412 (1073)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTH
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHH
Confidence 2111111 1111122 23444566666789999999999999888764421 22
Q ss_pred HhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCC--------C-CchhhHHHhhh--------
Q 006201 256 PYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDS--------D-IPCFYFIKHAL-------- 318 (657)
Q Consensus 256 ~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~l-------- 318 (657)
+++..+...+...+..+++.. +. ++++|+. . ...++..+..+
T Consensus 413 ~i~~~L~~vlI~~m~~P~ev~----------i~-----------e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~ 471 (1073)
T 3gjx_A 413 TVLSKVRLLMVSRMAKPEEVL----------VV-----------ENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDY 471 (1073)
T ss_dssp HHHHHHHHHHHHTCCCSCCEE----------EE-----------ECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHhcCCCcccc----------cc-----------CcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCH
Confidence 333344444333332211100 00 0000100 0 00000111110
Q ss_pred hhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCC----CchhchHHHHHhhhcCc---ch--hhHHHHHH
Q 006201 319 PVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD----DIVPLVMPFVEENITKQ---EW--RQREAATY 389 (657)
Q Consensus 319 ~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~----~~~~~l~~~l~~~l~~~---~~--~~r~aal~ 389 (657)
......+...+...-+. ++-+|..+.++..++++++....+ .++|.+++.+......+ +. .++...++
T Consensus 472 ~~~~~i~~~~l~~~~~~---~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~ 548 (1073)
T 3gjx_A 472 VDTEIIMTKKLQNQVNG---TEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMY 548 (1073)
T ss_dssp HHHHHHHHHHHHHHHTS---CCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC---CCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHH
Confidence 12223333333322111 123599999999999999866542 57888888887654332 22 34444456
Q ss_pred HHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCC-ccCCcccHHHHHHHHHHHcc
Q 006201 390 AFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLET-PIINQGNCQQIISVLLQSMK 468 (657)
Q Consensus 390 ~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~~~~~~~~il~~l~~~l~ 468 (657)
.+|...+-. ..-..++..++..++..+ .+.++.|+.+|+.++..+++.+....... +....+|+..++..+.....
T Consensus 549 vlgrY~~wl--~~h~~~L~~vl~~L~~~m-~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~ 625 (1073)
T 3gjx_A 549 IVGQYPRFL--RAHWKFLKTVVNKLFEFM-HETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIIC 625 (1073)
T ss_dssp HHHHCHHHH--HHCHHHHHHHHHHHHHHT-TCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHT
T ss_pred HHhhhHHHH--HhCHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHH
Confidence 777655432 122467888999999999 99999999999999999999886422100 11234688888887777766
Q ss_pred c-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhcccc--------c-hhh---hHHHHHHHHHHHHH
Q 006201 469 D-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHRED--------A-GES---RLRTAAYETLNEVV 535 (657)
Q Consensus 469 d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~--------~-~~~---~~~~~~~~al~~l~ 535 (657)
+ .++-...-..+++.++....+. .....++..+++.+...++.-- . .+. +-...++++..+++
T Consensus 626 ~l~~~~~~~lyeav~~vi~~~p~~----~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~ 701 (1073)
T 3gjx_A 626 DLQPQQVHTFYEAVGYMIGAQTDQ----TVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRAC 701 (1073)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCCCH----HHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHhCCCc----chHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHH
Confidence 5 4555566777888888764321 1123455555555444332110 0 011 12247788888999
Q ss_pred HhcccccHHHHHHHHHHHHHHHHHHHhhh---c---CChhHH-HHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHH
Q 006201 536 RCSTDETAPMVMQLVPLIMMELHQTLEAQ---K---LSSDER-EKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQ 608 (657)
Q Consensus 536 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~---~---~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 608 (657)
...|..|.|++..+++.+++..+...+.. . .....+ .....+|..--+.+.-+.+.+++.++.......++++
T Consensus 702 ~~~g~~f~~~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~p 781 (1073)
T 3gjx_A 702 KAVGHPFVIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPP 781 (1073)
T ss_dssp HHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHH
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHH
Confidence 99999999999999998887655422110 0 000000 0111233222233334444455553334444467788
Q ss_pred HHHHHHHHHcccCCcchh-hHHHHHHHHHHHhchhhhhcccccc
Q 006201 609 MMGLFLRVFAIRSATAHE-EAMLAIGALAYATGLCHHRRCCWGL 651 (657)
Q Consensus 609 i~~~l~~~l~~~~~~v~~-~~~~~l~~l~~~~g~~f~~y~~~~~ 651 (657)
+++.++.-++...++.|+ .++.+++.+++.+|..+.++++..+
T Consensus 782 l~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il 825 (1073)
T 3gjx_A 782 LLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIF 825 (1073)
T ss_dssp HHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHH
T ss_pred HHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhcchhHHHHH
Confidence 999888888775555554 5789999999999999999888654
No 50
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.56 E-value=2.6e-12 Score=136.21 Aligned_cols=390 Identities=14% Similarity=0.133 Sum_probs=262.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhc--Cc-------ccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhh
Q 006201 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQ--NL-------PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHR 74 (657)
Q Consensus 4 ~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~--~~-------~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~ 74 (657)
.+.++++.+.|+|++.+.+|.+.+.++... +| .+.++.|+++|.. +.++.++..|+..|.++........
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~-~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK-TDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTC-TTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcC-CCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 467889999999999999999999876543 22 3567788888875 4578999999999999765321100
Q ss_pred HHHhhhhcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCC----CCchHHHHHHHhhcCCCh-----
Q 006201 75 KFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHK----QWPELIGALLSNIHQLPP----- 145 (657)
Q Consensus 75 ~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~----~~~~l~~~l~~~l~~~~~----- 145 (657)
. .-......+.|+..+.+++..+|..++.+|+.|+... +.. .-...++.|+..+.+++.
T Consensus 156 ~-----------~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~-~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~ 223 (529)
T 3tpo_A 156 K-----------AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAG-SAFRDLVIKHGAIDPLLALLAVPDLSTLAC 223 (529)
T ss_dssp H-----------HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTCHHHHHHTTCSSCGGGSCH
T ss_pred H-----------HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccC-HHHHHHHHHcCCcHHHHHHHhccchhHhHH
Confidence 0 0011234567888999999999999999999998642 100 013456778888876543
Q ss_pred hHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHH
Q 006201 146 HTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVC 225 (657)
Q Consensus 146 ~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~ 225 (657)
.....+..++..++....+..- ......++|.+...+. +.+++++..|+.+|..+...-.+... ......+++.+.
T Consensus 224 ~~~~~a~~~L~nl~~~~~~~~~-~~~~~~~lp~L~~LL~--~~~~~v~~~a~~aL~~l~~~~~~~~~-~v~~~g~i~~Lv 299 (529)
T 3tpo_A 224 GYLRNLTWTLSNLCRNKNPAPP-LDAVEQILPTLVRLLH--HNDPEVLADSCWAISYLTDGPNERIE-MVVKKGVVPQLV 299 (529)
T ss_dssp HHHHHHHHHHHHHHCCCTTCCC-HHHHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHSSCHHHHH-HHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhcccchhh-HHHHhhHHHHHHHHhc--CCcHHHHHHHHHHHHHhhhhhhhhHH-HHHhccchHHHH
Confidence 3456777888888775422211 3456778999999998 68899999999999987653221100 000012466677
Q ss_pred hhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHH-HHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCC
Q 006201 226 EATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSG 304 (657)
Q Consensus 226 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~ 304 (657)
.++.++++.++..++.+++.++..........+. ..++.+...+.+.++.++..++..+..++....+
T Consensus 300 ~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~----------- 368 (529)
T 3tpo_A 300 KLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD----------- 368 (529)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHH-----------
T ss_pred HHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHH-----------
Confidence 7788899999999999999998655433322222 4667777788889999999999888888753211
Q ss_pred CCCCchhhHHHhhh-hhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCch-----hchHHHHHhhhcC
Q 006201 305 DSDIPCFYFIKHAL-PVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIV-----PLVMPFVEENITK 378 (657)
Q Consensus 305 ~~~~~~~~~~~~~l-~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~-----~~l~~~l~~~l~~ 378 (657)
....++ ..++|.++..+.. .++.++..|..+|..++.....+.. .-.++.+.+.+.+
T Consensus 369 --------~~~~v~~~g~i~~Lv~lL~~---------~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~ 431 (529)
T 3tpo_A 369 --------QIQQVVNHGLVPFLVGVLSK---------ADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 431 (529)
T ss_dssp --------HHHHHHHTTHHHHHHHHHHS---------SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred --------HHHHHHhcCcHHHHHHHhcC---------CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcC
Confidence 111111 2467777776653 2257888999999998865322111 1245566677888
Q ss_pred cchhhHHHHHHHHHHhhcC---CC-CCcchHHHHH--HHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 006201 379 QEWRQREAATYAFGSILEG---PS-PEKLVPLVNI--ALNFMLTALMQDPNNHVKDTTAWTLGRMFE 439 (657)
Q Consensus 379 ~~~~~r~aal~~l~~i~~~---~~-~~~~~~~~~~--i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~ 439 (657)
++++++..++.+|..|... .. ...+...+.+ .+..|.... .+++..|+..|...+.+|..
T Consensus 432 ~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq-~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 432 KDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ-RHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGG-GCSSHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHH-cCCCHHHHHHHHHHHHHHCC
Confidence 8999999999999887642 11 0111112222 244554455 78999999999999877643
No 51
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.54 E-value=2.3e-12 Score=137.47 Aligned_cols=474 Identities=11% Similarity=0.053 Sum_probs=283.6
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCC---CCCchHHHHHHHhhcCC-ChhHHHHHHHHHHHHhhhccccc
Q 006201 91 AQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH---KQWPELIGALLSNIHQL-PPHTKQATLETLGYICEEVSSDA 166 (657)
Q Consensus 91 ~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~---~~~~~l~~~l~~~l~~~-~~~~~~~~l~~l~~i~~~~~~~~ 166 (657)
....+.|+..+.++++.+|..++.+|..++...... -.-++.++.+++.+.+. ++..+..++.+|..++... +.
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~--~~ 93 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR--EG 93 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH--HH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc--hh
Confidence 345667888888999999999999999999754210 02347889999988654 8889999999999986643 11
Q ss_pred cchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHH
Q 006201 167 VEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAI 246 (657)
Q Consensus 167 l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l 246 (657)
...-.-...+|.+...+. ++++.++..|+.+|.++...-+... ........++.+..++.+++++++..++.+|..+
T Consensus 94 ~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~l 170 (529)
T 1jdh_A 94 LLAIFKSGGIPALVKMLG--SPVDSVLFYAITTLHNLLLHQEGAK-MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170 (529)
T ss_dssp HHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHHHCTTHH-HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCcchH-HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 101112357888888888 6779999999999999876422110 0001134677888888888999999999999888
Q ss_pred HHHHHHhhHHhHH-HHHHHHHHHHhcCC-hHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHH
Q 006201 247 SSTYYEKLAPYIQ-DIFNITAKAVREDE-EPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPL 324 (657)
Q Consensus 247 ~~~~~~~~~~~~~-~l~~~~~~~~~~~~-~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 324 (657)
+...++.-..... ..++.++..+.+.+ +..+..+...+..++... + ....+.. ...++.
T Consensus 171 a~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~-~---------------~~~~~~~---~g~~~~ 231 (529)
T 1jdh_A 171 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-S---------------NKPAIVE---AGGMQA 231 (529)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST-T---------------HHHHHHH---TTHHHH
T ss_pred HhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCc-c---------------cHHHHHH---CCCHHH
Confidence 7543332222221 34555555665544 344555566655555321 0 0001111 235666
Q ss_pred HHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCC-CchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcc
Q 006201 325 LLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD-DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKL 403 (657)
Q Consensus 325 l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~ 403 (657)
++..+... +..++..+..+|..++...+. .....++|.+.+.+.++++.+|..++.+|+.++.+. .+..
T Consensus 232 L~~ll~~~---------~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~-~~~~ 301 (529)
T 1jdh_A 232 LGLHLTDP---------SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN-YKNK 301 (529)
T ss_dssp HHTTTTSS---------CHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC-HHHH
T ss_pred HHHHHhCC---------ChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HHHH
Confidence 66555421 136777888999999876532 334456777778888889999999999999998752 1222
Q ss_pred hHHH-HHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHhhhccCcCCCccCCcc-cHHHHHHHHHHHccc-c-hHHHHHH
Q 006201 404 VPLV-NIALNFMLTALMQD--PNNHVKDTTAWTLGRMFEFLHGSTLETPIINQG-NCQQIISVLLQSMKD-V-PNVAEKA 477 (657)
Q Consensus 404 ~~~~-~~i~~~l~~~l~~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~~~il~~l~~~l~d-~-~~v~~~a 477 (657)
.... ...++.++..+ .+ .++.+|..++++++.++...++. ...... .-...++.+++.+.+ + +.++..+
T Consensus 302 ~~~~~~~~v~~L~~ll-~~~~~~~~v~~~a~~~L~nl~~~~~~~----~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a 376 (529)
T 1jdh_A 302 MMVCQVGGIEALVRTV-LRAGDREDITEPAICALRHLTSRHQEA----EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 376 (529)
T ss_dssp HHHHHTTHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHTSSSTTH----HHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHH
T ss_pred HHHHHcCChHHHHHHH-HccCCHHHHHHHHHHHHHHHHcCCchH----HHHHHHHHHcCChhHHHHHhccccchHHHHHH
Confidence 2222 13567777777 53 44899999999999997642210 000001 112457888888886 3 5899999
Q ss_pred HHHHHHHHhhccCCCCCCCCCchhH-HHHHHHHHHhhccccchhhhHHHHHHHHHH----------------------HH
Q 006201 478 CGALYFLAQGFEDAISPSSPLTPFF-QEIVQALLTVTHREDAGESRLRTAAYETLN----------------------EV 534 (657)
Q Consensus 478 ~~al~~l~~~~~~~~~~~~~l~~~~-~~i~~~L~~~l~~~~~~~~~~~~~~~~al~----------------------~l 534 (657)
++++.+++..-. .-..+. ..+++.|+..+.+.+ ..+|..+..+++ .+
T Consensus 377 ~~~l~nl~~~~~-------~~~~~~~~~~i~~L~~ll~~~~---~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L 446 (529)
T 1jdh_A 377 VGLIRNLALCPA-------NHAPLREQGAIPRLVQLLVRAH---QDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHIL 446 (529)
T ss_dssp HHHHHHHTTSGG-------GHHHHHHTTHHHHHHHHHHHHH---HHHC-----------CBTTBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcChh-------hhHHHHHcCCHHHHHHHHHHHh---HHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHH
Confidence 999999985311 112222 256677777776432 344444443333 33
Q ss_pred HHhcccccHHHHH-HHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHH--HHHHH
Q 006201 535 VRCSTDETAPMVM-QLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYA--DQMMG 611 (657)
Q Consensus 535 ~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~--~~i~~ 611 (657)
.... +....+.. ..++.++..+. +.+. .++..+..+++.++. +.+ ....+ ...++
T Consensus 447 ~~~~-~~~~~l~~~~~v~~l~~ll~---------~~~~----~v~~~a~~~l~~l~~----~~~----~~~~i~~~~~~~ 504 (529)
T 1jdh_A 447 ARDV-HNRIVIRGLNTIPLFVQLLY---------SPIE----NIQRVAAGVLCELAQ----DKE----AAEAIEAEGATA 504 (529)
T ss_dssp TTSH-HHHHHHHHTTCHHHHHHGGG---------CSCH----HHHHHHHHHHHHHTT----SHH----HHHHHHHTTCHH
T ss_pred hcCc-hHHHHHhccCCccHHHHHHc---------CCch----HHHHHHHHHHHHHhc----CHH----HHHHHHHcCChH
Confidence 2210 00000000 11223333221 1111 345556666666542 111 22222 13567
Q ss_pred HHHHHHcccCCcchhhHHHHHHHH
Q 006201 612 LFLRVFAIRSATAHEEAMLAIGAL 635 (657)
Q Consensus 612 ~l~~~l~~~~~~v~~~~~~~l~~l 635 (657)
.+...+..+++++++.+..++.+|
T Consensus 505 ~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 505 PLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhc
Confidence 777888888899999999998876
No 52
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.54 E-value=1.6e-13 Score=144.74 Aligned_cols=361 Identities=12% Similarity=0.146 Sum_probs=233.3
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcC
Q 006201 133 IGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFS 212 (657)
Q Consensus 133 ~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~ 212 (657)
++.+++.+.++|+..+..|...+..+...-...-+..-.-..++|.|++.|.. +.+++++..|..+|.++...-++...
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~-~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK-TDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCC-CCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 78899999999999999999988887653211112011224578999999974 56689999999999998753221110
Q ss_pred ChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHH-HHHHHHHHHHhcCCh-----HHHHHHHHHHHH
Q 006201 213 NDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEE-----PVALQAIEFWSS 286 (657)
Q Consensus 213 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~-----~v~~~a~~~~~~ 286 (657)
.....-.++.+..++.+++.+++..++.+|+.++...+..-..... ..++.++..+...+. .+...+...+..
T Consensus 138 -~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 216 (510)
T 3ul1_B 138 -AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 216 (510)
T ss_dssp -HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred -HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence 0000125778888889999999999999999998765443222222 355666666665442 233444444444
Q ss_pred HhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCC---
Q 006201 287 VCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDD--- 363 (657)
Q Consensus 287 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~--- 363 (657)
++... . +...+ .....++|.+.+.+... +..++..|..+|..++....+.
T Consensus 217 l~~~~--------------~--~~~~~--~~~~~~lp~L~~LL~~~---------~~~v~~~A~~aL~~L~~~~~~~~~~ 269 (510)
T 3ul1_B 217 LCRNK--------------N--PAPPL--DAVEQILPTLVRLLHHN---------DPEVLADSCWAISYLTDGPNERIEM 269 (510)
T ss_dssp HHCCC--------------S--SCCCH--HHHHHHHHHHHHHTTCS---------CHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred Hhhcc--------------c--chhHH--HHHHhHHHHHHHHHhcC---------CHHHHHHHHHHHHHHhhchhhhHHH
Confidence 44321 0 00011 11235667776666421 1357778888888887543211
Q ss_pred -chhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhh
Q 006201 364 -IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFL 441 (657)
Q Consensus 364 -~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~ 441 (657)
.-.-+++.+.+.+.++++.++..++.+++.++.+. .......+ ...++.+...+ .++++.+|..|+|++++++..-
T Consensus 270 i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~-~~~~~~i~~~g~l~~L~~LL-~~~~~~v~~~A~~aL~nl~a~~ 347 (510)
T 3ul1_B 270 VVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGR 347 (510)
T ss_dssp HHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGGGCC-CT-TCSSHHHHHHHHHHHHHHTTSC
T ss_pred HHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCC-HHHHHHHhhccchHHHHHHh-cCCCHHHHHHHHHHHHHHHcCc
Confidence 11235566667778889999999999999998763 12111112 23567777788 8999999999999999998643
Q ss_pred ccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhH--HHHHHHHHHhhccccc
Q 006201 442 HGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFF--QEIVQALLTVTHREDA 518 (657)
Q Consensus 442 ~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~--~~i~~~L~~~l~~~~~ 518 (657)
.. ....-.-..++|.++..+.+ +..++..|+++|.+++..... . ...++ ...++.|+.++...+
T Consensus 348 ~~------~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~-----~-~~~~L~~~g~i~~L~~LL~~~d- 414 (510)
T 3ul1_B 348 QD------QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTV-----E-QIVYLVHCGIIEPLMNLLSAKD- 414 (510)
T ss_dssp HH------HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCH-----H-HHHHHHHTTCHHHHHHGGGCSC-
T ss_pred HH------HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCH-----H-HHHHHHHCCCHHHHHHHhcCCC-
Confidence 21 01111123578889998886 789999999999999875211 1 11111 245788888887764
Q ss_pred hhhhHHHHHHHHHHHHHHhcc
Q 006201 519 GESRLRTAAYETLNEVVRCST 539 (657)
Q Consensus 519 ~~~~~~~~~~~al~~l~~~~~ 539 (657)
.+++..++++|..+.+...
T Consensus 415 --~~i~~~~L~aL~nil~~~~ 433 (510)
T 3ul1_B 415 --TKIIQVILDAISNIFQAAE 433 (510)
T ss_dssp --HHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHhH
Confidence 5788889999999987654
No 53
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.53 E-value=2.5e-13 Score=128.24 Aligned_cols=197 Identities=11% Similarity=0.184 Sum_probs=161.9
Q ss_pred CcchHhhhHHHHHHHHHhhcCC---CchhchHHHHHhhhc-CcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHH
Q 006201 341 GAWNIAMAGGTCLGLVARTVGD---DIVPLVMPFVEENIT-KQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLT 416 (657)
Q Consensus 341 ~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~ 416 (657)
.+|..|+.|...|..+....+. ..+..+++.+...+. |.+..+|.+|+.+++.++.+.+ ..+.+|+..++|.++.
T Consensus 27 ~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~-~~~~~~~~~ilp~ll~ 105 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA-KRFSNYASACVPSLLE 105 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHH
Confidence 4599999999999999987432 234567888888884 8999999999999999998763 5678999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCC
Q 006201 417 ALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPS 495 (657)
Q Consensus 417 ~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~ 495 (657)
.+ +|+++.||.++..++..+..... +..+++.+...+.+ ++.+|..++..+..++...++ .
T Consensus 106 ~l-~d~~~~vr~~a~~aL~~~~~~~~-------------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~----~ 167 (242)
T 2qk2_A 106 KF-KEKKPNVVTALREAIDAIYASTS-------------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQP----T 167 (242)
T ss_dssp GG-GCCCHHHHHHHHHHHHHHHTTSC-------------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG----G
T ss_pred HH-cCCCHHHHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC----C
Confidence 99 99999999999999998877531 47889999999986 799999999999998876432 2
Q ss_pred CCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHH
Q 006201 496 SPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDE-TAPMVMQLVPLIMMELHQ 559 (657)
Q Consensus 496 ~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~-~~~~~~~l~~~l~~~l~~ 559 (657)
....++++.+++.|..++.+.. ..+|..+.++++.++...|.. +.+|+..+-+.-.+.+..
T Consensus 168 ~~~~~~l~~l~p~l~~~l~D~~---~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~ 229 (242)
T 2qk2_A 168 ALNKKLLKLLTTSLVKTLNEPD---PTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKE 229 (242)
T ss_dssp GCCHHHHHHHHHHHHHHHTSSC---HHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHHH
Confidence 3567899999999999998764 789999999999999999975 666666554444444443
No 54
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.52 E-value=7.3e-11 Score=126.54 Aligned_cols=505 Identities=12% Similarity=0.064 Sum_probs=294.9
Q ss_pred ChHHHHHHHHHHHHH--HhcCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHH
Q 006201 16 DGTVRKQAEESLKQY--QEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQI 93 (657)
Q Consensus 16 d~~~r~~A~~~L~~~--~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i 93 (657)
|+..|+.+-..+--+ ...+...+...+++.+.+ .+...|+++-.++..+.+. .++....+
T Consensus 51 ~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvkl~~s--~~~~~Krl~YL~l~~~~~~----------------~~e~~~L~ 112 (621)
T 2vgl_A 51 DGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSS--NRYTEKQIGYLFISVLVNS----------------NSELIRLI 112 (621)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCCSCHHHHHHGGGC--SCHHHHHHHHHHHHHSCCC----------------CHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHhcC--CCHHHHHHHHHHHHHHccC----------------CcHHHHHH
Confidence 444555555554322 222333344445555553 5788999988888887653 34555666
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhh--cCCChhHHHHHHHHHHHHhhhccccccchhh
Q 006201 94 KSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNI--HQLPPHTKQATLETLGYICEEVSSDAVEQDH 171 (657)
Q Consensus 94 ~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l--~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~ 171 (657)
.+.+.+-+.++++.+|..|..+++.+...+ ..+.+.+.+.+++ .+.++.+|..|+.++..+.+.. |+.+ ..
T Consensus 113 iN~l~kDl~~~n~~ir~lALr~L~~i~~~e----~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~-p~~~-~~- 185 (621)
T 2vgl_A 113 NNAIKNDLASRNPTFMGLALHCIANVGSRE----MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS-PDLV-PM- 185 (621)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHCCHH----HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC-GGGC-CC-
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhccCCHH----HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC-hhhc-Cc-
Confidence 778888999999999999999999886533 4568889999999 8899999999999999999966 6655 21
Q ss_pred HhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCC-------------cHHHHHH
Q 006201 172 VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSP-------------EVKIRQA 238 (657)
Q Consensus 172 ~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~-------------~~~~~~~ 238 (657)
..+++.+...+. |.++.|+.+|+.++..+...-+..+.. ..+.+++.+.+++... ++=.+..
T Consensus 186 -~~~~~~l~~lL~--d~d~~V~~~a~~~l~~i~~~~~~~~~~--~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~ 260 (621)
T 2vgl_A 186 -GDWTSRVVHLLN--DQHLGVVTAATSLITTLAQKNPEEFKT--SVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVK 260 (621)
T ss_dssp -CSCHHHHHHHTT--CSCHHHHHHHHHHHHHHHHHCHHHHTT--HHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHH
T ss_pred -hhHHHHHHHHhC--CCCccHHHHHHHHHHHHHHhChHHHHH--HHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHH
Confidence 245667777777 889999999999999876543322221 1123344443332111 3445555
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcC---------C--hHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCC
Q 006201 239 AFECLVAISSTYYEKLAPYIQDIFNITAKAVRED---------E--EPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSD 307 (657)
Q Consensus 239 ~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~---------~--~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~ 307 (657)
+++.+..+...........+.+++..++....+. + ..+...++..+..+..
T Consensus 261 il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~------------------ 322 (621)
T 2vgl_A 261 LLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS------------------ 322 (621)
T ss_dssp HHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC------------------
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC------------------
Confidence 6666665543211112223333333333332211 1 1333333333322210
Q ss_pred CchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCC-CchhchHHHHHhhhc-CcchhhHH
Q 006201 308 IPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD-DIVPLVMPFVEENIT-KQEWRQRE 385 (657)
Q Consensus 308 ~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~-~~~~~l~~~l~~~l~-~~~~~~r~ 385 (657)
...+. ...+..+...+.. .+.++|..|..++..++...+. ..+....+.+...+. +++..+|.
T Consensus 323 --~~~~~----~~~~~~L~~~L~~---------~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~ 387 (621)
T 2vgl_A 323 --EPNLL----VRACNQLGQFLQH---------RETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQ 387 (621)
T ss_dssp --CHHHH----HHHHHHHHHHSSC---------SCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHH
T ss_pred --cHHHH----HHHHHHHHHHhcC---------CCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHH
Confidence 01122 2233333333321 1137888899999888776542 234444555556677 88888999
Q ss_pred HHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHH
Q 006201 386 AATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQ 465 (657)
Q Consensus 386 aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~ 465 (657)
-++..+..++.. ..+..++..+...+ .+.+...|..+...++.++..++. ....++ ..+++
T Consensus 388 ~aL~lL~~l~~~-------~Nv~~Iv~eL~~yl-~~~d~~~~~~~v~~I~~la~k~~~-------~~~~~v----~~Ll~ 448 (621)
T 2vgl_A 388 RAVDLLYAMCDR-------SNAQQIVAEMLSYL-ETADYSIREEIVLKVAILAEKYAV-------DYTWYV----DTILN 448 (621)
T ss_dssp HHHHHHHHHCCH-------HHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHCS-------STHHHH----HHHHH
T ss_pred HHHHHHHHHcCh-------hhHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhcCC-------cHHHHH----HHHHH
Confidence 999999888753 23677778888888 777889999999999999987742 333444 44444
Q ss_pred Hccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccc--c
Q 006201 466 SMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDE--T 542 (657)
Q Consensus 466 ~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~--~ 542 (657)
.+.+ ...+...++..+..++... ..+..| .+..|+..+.+... ...+...+...+|.......+. .
T Consensus 449 ll~~~~~~v~~ev~~~l~~ii~~~-------~~~~~~---~~~~l~~~l~~~~~-~~~li~~~~wilGEy~~~~~~~~~~ 517 (621)
T 2vgl_A 449 LIRIAGDYVSEEVWYRVIQIVINR-------DDVQGY---AAKTVFEALQAPAC-HENLVKVGGYILGEFGNLIAGDPRS 517 (621)
T ss_dssp HHHHHGGGSCSHHHHHHHHHHGGG-------CSCHHH---HHHHHHHHHTSSSC-CHHHHHHHHHHHHHHTHHHHSSTTS
T ss_pred HHHhhcccchHHHHHHHHHHHhCC-------hhHHHH---HHHHHHHHHcCccc-hHHHHHHHHHHhcchHHHhcccCCC
Confidence 4442 2234445556666666542 234444 45566777766543 1233334557777776554432 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHcccCC
Q 006201 543 APMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSA 622 (657)
Q Consensus 543 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~ 622 (657)
.| ..++..+.+.+. .+.. .+|..++.++..++...+ + ..+.+..++..... .++.+.
T Consensus 518 ~p--~~~l~~l~~~~~---------~~~~----~v~~~~Lta~~Kl~~~~p-~------~~~~i~~~l~~~~~-~~~~d~ 574 (621)
T 2vgl_A 518 SP--LIQFNLLHSKFH---------LCSV----PTRALLLSTYIKFVNLFP-E------VKATIQDVLRSDSQ-LKNADV 574 (621)
T ss_dssp CH--HHHHHHHHHHHT---------TSCH----HHHHHHHHHHHHHHHHCG-G------GHHHHHHHHSSHHH-HSCSSH
T ss_pred CH--HHHHHHHHHHhc---------cCCH----HHHHHHHHHHHHHHHHCh-H------HHHHHHHHHHHHhc-CCCCCH
Confidence 11 111222222221 1111 467777888877766542 2 33333333332221 125678
Q ss_pred cchhhHHHHHHHHH
Q 006201 623 TAHEEAMLAIGALA 636 (657)
Q Consensus 623 ~v~~~~~~~l~~l~ 636 (657)
++|+-|...+.-+-
T Consensus 575 evrdRA~~y~~Ll~ 588 (621)
T 2vgl_A 575 ELQQRAVEYLRLST 588 (621)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 89999988877664
No 55
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.47 E-value=1.3e-12 Score=122.69 Aligned_cols=196 Identities=12% Similarity=0.183 Sum_probs=160.3
Q ss_pred CcchHhhhHHHHHHH-HHhhcCCC-----chhchHHHHHhhh-cCcchhhHHHHHHHHHHhhcCCCCCcch-HHHHHHHH
Q 006201 341 GAWNIAMAGGTCLGL-VARTVGDD-----IVPLVMPFVEENI-TKQEWRQREAATYAFGSILEGPSPEKLV-PLVNIALN 412 (657)
Q Consensus 341 ~~~~~r~~a~~~L~~-l~~~~~~~-----~~~~l~~~l~~~l-~~~~~~~r~aal~~l~~i~~~~~~~~~~-~~~~~i~~ 412 (657)
..|.-|+.|...|.. +....++. -+..++..+...+ ++.+..+|.+|+.+++.++.+.+...+. +|...++|
T Consensus 28 ~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp 107 (249)
T 2qk1_A 28 SKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFT 107 (249)
T ss_dssp SSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHH
Confidence 349999999999888 87543321 2345677777888 6889999999999999999887415677 99999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCC
Q 006201 413 FMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDA 491 (657)
Q Consensus 413 ~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~ 491 (657)
.++..+ +|..+.||.++..++..+++.+. |.....+++.+++.++..|+. ++.+|..++.+|..+++..+.
T Consensus 108 ~ll~~l-~dkk~~V~~aa~~al~~i~~~~~------~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~- 179 (249)
T 2qk1_A 108 PLLDRT-KEKKPSVIEAIRKALLTICKYYD------PLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD- 179 (249)
T ss_dssp HHHHGG-GCCCHHHHHHHHHHHHHHHHHSC------TTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS-
T ss_pred HHHHHH-cCCCHHHHHHHHHHHHHHHHHcc------ccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC-
Confidence 999999 99999999999999999999874 212223488999999999986 799999999999999987431
Q ss_pred CCCCCCCchhH-HHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccc-cHHHHHHH
Q 006201 492 ISPSSPLTPFF-QEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDE-TAPMVMQL 549 (657)
Q Consensus 492 ~~~~~~l~~~~-~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~-~~~~~~~l 549 (657)
.+..+.+|+ +.+++.+.+++.+.+ ..+|..+.++++.+.+..|+. +.||+..+
T Consensus 180 --~~~~l~~~l~~~iip~l~~~l~D~~---~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 180 --GYSTLQRYLKDEVVPIVIQIVNDTQ---PAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp --CSHHHHHHHTTTHHHHHHHHHTCSS---HHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred --cchhHHHHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 013466899 999999999998764 789999999999999999985 78887753
No 56
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.34 E-value=1.5e-10 Score=111.86 Aligned_cols=252 Identities=19% Similarity=0.194 Sum_probs=174.4
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhH
Q 006201 176 LTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLA 255 (657)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 255 (657)
++.+...+. ++++.+|..|+.+|+.+-. ...++.+...++++++.+|..++.+|+.+... .
T Consensus 25 i~~L~~~L~--~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~-----~ 85 (280)
T 1oyz_A 25 DDELFRLLD--DHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-----K 85 (280)
T ss_dssp HHHHHHHTT--CSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-----T
T ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-----c
Confidence 566777777 7889999999999988421 34667777788889999999999999876421 1
Q ss_pred HhHHHHHHHHHH-HHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcC
Q 006201 256 PYIQDIFNITAK-AVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEE 334 (657)
Q Consensus 256 ~~~~~l~~~~~~-~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~ 334 (657)
..++.+++.+.. ..++.++.+|..++..+..++...+ .+ -+.+++.+...+.+
T Consensus 86 ~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~-------------------~~----~~~~~~~L~~~l~d--- 139 (280)
T 1oyz_A 86 KCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP-------------------IY----SPKIVEQSQITAFD--- 139 (280)
T ss_dssp TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG-------------------GG----HHHHHHHHHHHTTC---
T ss_pred ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC-------------------cc----cHHHHHHHHHHhhC---
Confidence 123345555542 4577889999999988888764310 01 12345666655541
Q ss_pred ccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHH
Q 006201 335 DQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFM 414 (657)
Q Consensus 335 d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l 414 (657)
.++.+|..|..+|..+.. +..++.+...+.++++.+|..++.+|+.+.... +..++.+
T Consensus 140 ------~~~~vR~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~---------~~~~~~L 197 (280)
T 1oyz_A 140 ------KSTNVRRATAFAISVIND-------KATIPLLINLLKDPNGDVRNWAAFAININKYDN---------SDIRDCF 197 (280)
T ss_dssp ------SCHHHHHHHHHHHHTC----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC---------HHHHHHH
T ss_pred ------CCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc---------HHHHHHH
Confidence 236889988888876543 235566666778899999999999999985321 3567888
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhccCCCCC
Q 006201 415 LTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISP 494 (657)
Q Consensus 415 ~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~~~~ 494 (657)
...+ +|+++.||..|+++|+++.. +..++.|+..+.| +.||..|+.+|..+-.
T Consensus 198 ~~~l-~d~~~~vR~~A~~aL~~~~~-----------------~~~~~~L~~~l~d-~~vr~~a~~aL~~i~~-------- 250 (280)
T 1oyz_A 198 VEML-QDKNEEVRIEAIIGLSYRKD-----------------KRVLSVLCDELKK-NTVYDDIIEAAGELGD-------- 250 (280)
T ss_dssp HHHT-TCSCHHHHHHHHHHHHHTTC-----------------GGGHHHHHHHHTS-SSCCHHHHHHHHHHCC--------
T ss_pred HHHh-cCCCHHHHHHHHHHHHHhCC-----------------HhhHHHHHHHhcC-ccHHHHHHHHHHhcCc--------
Confidence 8899 99999999999999998762 1245667777775 3488889888887632
Q ss_pred CCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHH
Q 006201 495 SSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETL 531 (657)
Q Consensus 495 ~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al 531 (657)
+..++.|...+.+.+ +..++..+++++
T Consensus 251 --------~~~~~~L~~~l~~~~--~~~~~~~~~~~l 277 (280)
T 1oyz_A 251 --------KTLLPVLDTMLYKFD--DNEIITSAIDKL 277 (280)
T ss_dssp --------GGGHHHHHHHHTTSS--CCHHHHHHHHHH
T ss_pred --------hhhhHHHHHHHhcCC--CcHHHHHHHHHh
Confidence 134556677776544 345555566555
No 57
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.29 E-value=3.6e-10 Score=109.25 Aligned_cols=253 Identities=11% Similarity=0.064 Sum_probs=177.6
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHh
Q 006201 94 KSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVN 173 (657)
Q Consensus 94 ~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~ 173 (657)
.+.|++.|.++++.+|..++.+|+.+. -++.++.+...+.++++.+|..++.+|+.+... .....
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~-------~~~~~ 89 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRG--------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-------KKCED 89 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC--------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-------TTTHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC--------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-------cccch
Confidence 356788899999999999999998875 257889999999999999999999999886431 12234
Q ss_pred HHHHHHHh-ccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHH
Q 006201 174 KILTAVVQ-GMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYE 252 (657)
Q Consensus 174 ~l~~~l~~-~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 252 (657)
.+++.+.. .++ ++++.||..++.+|+.+....+ .....+++.+...++++++.+|..++..|+.+...
T Consensus 90 ~l~~~L~~~~~~--d~~~~vr~~a~~aL~~l~~~~~------~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~--- 158 (280)
T 1oyz_A 90 NVFNILNNMALN--DKSACVRATAIESTAQRCKKNP------IYSPKIVEQSQITAFDKSTNVRRATAFAISVINDK--- 158 (280)
T ss_dssp HHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHHHCG------GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhccCC------cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH---
Confidence 45666653 345 7899999999999998653211 11245778888888999999999999999876531
Q ss_pred hhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhh
Q 006201 253 KLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQ 332 (657)
Q Consensus 253 ~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~ 332 (657)
..++.+...+++.++.+|..++..+..+.... +..++.+...+.
T Consensus 159 -------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~---------------------------~~~~~~L~~~l~-- 202 (280)
T 1oyz_A 159 -------ATIPLLINLLKDPNGDVRNWAAFAININKYDN---------------------------SDIRDCFVEMLQ-- 202 (280)
T ss_dssp -------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC---------------------------HHHHHHHHHHTT--
T ss_pred -------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc---------------------------HHHHHHHHHHhc--
Confidence 24555556778889999999998776653110 123455555443
Q ss_pred cCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHH
Q 006201 333 EEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALN 412 (657)
Q Consensus 333 ~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~ 412 (657)
+.++.+|..|..+|+.+. . +..++.+...+.++ .+|..++.+|+.+... ..+|
T Consensus 203 -------d~~~~vR~~A~~aL~~~~---~----~~~~~~L~~~l~d~--~vr~~a~~aL~~i~~~-----------~~~~ 255 (280)
T 1oyz_A 203 -------DKNEEVRIEAIIGLSYRK---D----KRVLSVLCDELKKN--TVYDDIIEAAGELGDK-----------TLLP 255 (280)
T ss_dssp -------CSCHHHHHHHHHHHHHTT---C----GGGHHHHHHHHTSS--SCCHHHHHHHHHHCCG-----------GGHH
T ss_pred -------CCCHHHHHHHHHHHHHhC---C----HhhHHHHHHHhcCc--cHHHHHHHHHHhcCch-----------hhhH
Confidence 122688998888887765 2 33444455555554 3889999999998641 2356
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHH
Q 006201 413 FMLTALMQDPNNHVKDTTAWTLG 435 (657)
Q Consensus 413 ~l~~~l~~d~~~~vr~~a~~~l~ 435 (657)
.+...+..++++.++..+...+.
T Consensus 256 ~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 256 VLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHHHHHTTSSCCHHHHHHHHHHT
T ss_pred HHHHHHhcCCCcHHHHHHHHHhh
Confidence 77777723456777777776664
No 58
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.26 E-value=3.1e-09 Score=110.04 Aligned_cols=353 Identities=14% Similarity=0.083 Sum_probs=213.5
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccc-hhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhc
Q 006201 133 IGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVE-QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANF 211 (657)
Q Consensus 133 ~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~-~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~ 211 (657)
+|.++..+.++++..+..|..+|..++..- +. .. .-.-...+|.+++.+. +++++++..|+.+|.++...-+
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~-~~~~i~~~g~i~~Lv~lL~--s~~~~~~~~A~~aL~nLa~~~~--- 76 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ES-AKQQVYQLGGICKLVDLLR--SPNQNVQQAAAGALRNLVFRST--- 76 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SS-HHHHHHHTTHHHHHHHHTT--SSCHHHHHHHHHHHHHHHSSCH---
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hH-HHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCH---
Confidence 577888889999999999999999987543 21 10 1122456889999998 6789999999999999875211
Q ss_pred CChhhHHH-----HHHHHHhhcc-CCcHHHHHHHHHHHHHHHHHHHHhhHH-hHHHHHHHHHHHHh--------c-----
Q 006201 212 SNDMERDY-----IMRVVCEATL-SPEVKIRQAAFECLVAISSTYYEKLAP-YIQDIFNITAKAVR--------E----- 271 (657)
Q Consensus 212 ~~~~~~~~-----il~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~l~~~~~~~~~--------~----- 271 (657)
..+.. .++.+..++. +++++++..++.+|..++.. ++ ... .+...++.++..+. +
T Consensus 77 ---~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~-~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~ 151 (457)
T 1xm9_A 77 ---TNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DE-LKEELIADALPVLADRVIIPFSGWCDGNSNMS 151 (457)
T ss_dssp ---HHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SS-THHHHHHHHHHHHHHHTTHHHHTCC-------
T ss_pred ---HHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HH-hHHHHHhccHHHHHHHHhccccccccCccchh
Confidence 11222 3667777777 77899999999999999875 22 222 22356666666662 1
Q ss_pred ---CChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhh
Q 006201 272 ---DEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMA 348 (657)
Q Consensus 272 ---~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~ 348 (657)
.++.+...|...+..++.. ++.. ..+.. .+..+|.++..+.....+.+.++ .....
T Consensus 152 ~e~~~~~v~~~a~~aL~nLs~~-~~~~----------------~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~---~~~e~ 210 (457)
T 1xm9_A 152 REVVDPEVFFNATGCLRNLSSA-DAGR----------------QTMRN-YSGLIDSLMAYVQNCVAASRCDD---KSVEN 210 (457)
T ss_dssp --CCCHHHHHHHHHHHHHHTTS-HHHH----------------HHHTT-STTHHHHHHHHHHHHHHHTCTTC---TTHHH
T ss_pred cccccHHHHHHHHHHHHHHccC-HHHH----------------HHHHH-cCCCHHHHHHHHHhhccccCCch---HHHHH
Confidence 2456667888888888864 2111 11110 01234444444432100000001 11112
Q ss_pred HHHHHHHHHh----------------------------hc------------------------CCC--chhchHHHHHh
Q 006201 349 GGTCLGLVAR----------------------------TV------------------------GDD--IVPLVMPFVEE 374 (657)
Q Consensus 349 a~~~L~~l~~----------------------------~~------------------------~~~--~~~~l~~~l~~ 374 (657)
+..+|..++. ++ +.+ +-+..++.+..
T Consensus 211 a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~ 290 (457)
T 1xm9_A 211 CMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLN 290 (457)
T ss_dssp HHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHH
T ss_pred HHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHH
Confidence 2222222210 00 000 01122333334
Q ss_pred hhcC-cchhhHHHHHHHHHHhhcCCCCC--cc-hHHH--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCC
Q 006201 375 NITK-QEWRQREAATYAFGSILEGPSPE--KL-VPLV--NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLET 448 (657)
Q Consensus 375 ~l~~-~~~~~r~aal~~l~~i~~~~~~~--~~-~~~~--~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 448 (657)
.+.+ .+...+++|+++|+.++.+.... .+ ...+ ...+|.++..+ .+++..||..|+|+|+.++..-.
T Consensus 291 lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL-~~~~~~v~~~A~~aL~nls~~~~------ 363 (457)
T 1xm9_A 291 LMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLL-QSGNSDVVRSGASLLSNMSRHPL------ 363 (457)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHT-TCSCHHHHHHHHHHHHHHHTSGG------
T ss_pred HHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHH-hCCCHhHHHHHHHHHHHHhcCHH------
Confidence 4433 35789999999999999763211 11 1122 25679999999 99999999999999999987432
Q ss_pred ccCCcccHHHHHHHHHHHccc-c------hHHHHHHHHHHHHHHhhccCCCCCCCCCchhH--HHHHHHHHHhhccccch
Q 006201 449 PIINQGNCQQIISVLLQSMKD-V------PNVAEKACGALYFLAQGFEDAISPSSPLTPFF--QEIVQALLTVTHREDAG 519 (657)
Q Consensus 449 ~~~~~~~~~~il~~l~~~l~d-~------~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~--~~i~~~L~~~l~~~~~~ 519 (657)
.....-...+|.|++.|.. + ..+...++.++.+++..- ......+ ...++.|..++....
T Consensus 364 --~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~-------~~~~~~i~~~g~l~~L~~L~~~~~-- 432 (457)
T 1xm9_A 364 --LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQ-------PQLAKQYFSSSMLNNIINLCRSSA-- 432 (457)
T ss_dssp --GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTC-------THHHHHHCCHHHHHHHHHHHHCTT--
T ss_pred --HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcC-------HHHHHHHHHcCCHHHHHHHHcCCC--
Confidence 2233345788999998874 2 357889999999988531 1111222 256777888777652
Q ss_pred hhhHHHHHHHHHHHHHH
Q 006201 520 ESRLRTAAYETLNEVVR 536 (657)
Q Consensus 520 ~~~~~~~~~~al~~l~~ 536 (657)
+.+++..+...|..+..
T Consensus 433 ~~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 433 SPKAAEAARLLLSDMWS 449 (457)
T ss_dssp CHHHHHHHHHHHHTTSS
T ss_pred cHHHHHHHHHHHHHHHc
Confidence 25677778888876654
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.18 E-value=8.3e-08 Score=105.26 Aligned_cols=330 Identities=12% Similarity=0.151 Sum_probs=228.6
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHhhhcCC--CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccc-cccchhhH
Q 006201 96 FILKTLSSPAHDARSTASQVVAKVAGIELPH--KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSS-DAVEQDHV 172 (657)
Q Consensus 96 ~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~--~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~-~~l~~~~~ 172 (657)
.+++.+...+..=++.++..++.+.....+. -.| .++..+...+.+.... ++|+..+..+++.... ... .+++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~-e~~~ 93 (986)
T 2iw3_A 18 ELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPE-HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSV-EPYI 93 (986)
T ss_dssp HHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCH-HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTT-HHHH
T ss_pred HHHhhccccchhHHHHHHHHHHHHHhccccccccch-hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCc-ccch
Confidence 3556665544444567777777777654221 234 6888888888775444 9999999999977632 223 5777
Q ss_pred hHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccC-CcHHHHHHHHHHHHHHHHHHH
Q 006201 173 NKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLS-PEVKIRQAAFECLVAISSTYY 251 (657)
Q Consensus 173 ~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~ 251 (657)
-.++|.++.... |....||.+|..+...++..++.. . ...+++.++..+.. ..|..+..+++++..+++..+
T Consensus 94 ~~~~~~~~~~~~--dk~~~v~~aa~~~~~~~~~~~~~~----a-~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~ 166 (986)
T 2iw3_A 94 VQLVPAICTNAG--NKDKEIQSVASETLISIVNAVNPV----A-IKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAK 166 (986)
T ss_dssp HTTHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHSCGG----G-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHhCCHH----H-HHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhH
Confidence 778899998888 888999999999999988755432 1 25677877777754 479999999999999999889
Q ss_pred HhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhh
Q 006201 252 EKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLK 331 (657)
Q Consensus 252 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~ 331 (657)
+.+...+++++|.+..++.|..++++.+|...+..+|... . ... +...+|.++++|.+
T Consensus 167 ~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~-------~-----------n~d----~~~~~~~~~~~~~~ 224 (986)
T 2iw3_A 167 DQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETV-------D-----------NKD----IERFIPSLIQCIAD 224 (986)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGC-------C-----------CTT----TGGGHHHHHHHHHC
T ss_pred HHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcC-------C-----------Ccc----hhhhHHHHHHHhcC
Confidence 9999999999999999999999999999988888777531 0 011 22345556555543
Q ss_pred hcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 006201 332 QEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIAL 411 (657)
Q Consensus 332 ~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~ 411 (657)
++ . -..++..|++..- -.+.-.|-+.-++
T Consensus 225 p~------------------------------------------------~-~~~~~~~l~~~tf--v~~v~~~~l~~~~ 253 (986)
T 2iw3_A 225 PT------------------------------------------------E-VPETVHLLGATTF--VAEVTPATLSIMV 253 (986)
T ss_dssp TT------------------------------------------------H-HHHHHHHHTTCCC--CSCCCHHHHHHHH
T ss_pred hh------------------------------------------------h-hHHHHHHhhcCee--EeeecchhHHHHH
Confidence 21 0 1112223333211 1233456788889
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc--chHHHHHHHHHHHHHHhhcc
Q 006201 412 NFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--VPNVAEKACGALYFLAQGFE 489 (657)
Q Consensus 412 ~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~~l~~~~~ 489 (657)
|.|.+.| ++....+++.++..+.++++-..+ |....+|++.++|.+.+.... +|++|..|-.|+.++.+..+
T Consensus 254 p~l~r~l-~~~~~~~~r~~~~~~~n~~~lv~~-----~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 254 PLLSRGL-NERETGIKRKSAVIIDNMCKLVED-----PQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp HHHHHHH-TSSSHHHHHHHHHHHHHHHTTCCC-----HHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhh-ccCcchhheeeEEEEcchhhhcCC-----HHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999 999999989999999999997754 446677888888888877664 69999999999998876533
Q ss_pred C-CC--CCCCCCchhHHHHHHHHHHhhcc
Q 006201 490 D-AI--SPSSPLTPFFQEIVQALLTVTHR 515 (657)
Q Consensus 490 ~-~~--~~~~~l~~~~~~i~~~L~~~l~~ 515 (657)
. .. .+......-...+...+...+..
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (986)
T 2iw3_A 328 VGEDDAIPELSHAGDVSTTLQVVNELLKD 356 (986)
T ss_dssp CBTTTBCCCCCCTTCHHHHHHHHHHHTTT
T ss_pred cccccccccccccchHHHHHHHHHHHhcc
Confidence 2 10 01111223345555556555544
No 60
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.17 E-value=9.8e-09 Score=107.05 Aligned_cols=366 Identities=12% Similarity=0.061 Sum_probs=219.4
Q ss_pred CCC-chHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHh
Q 006201 127 KQW-PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALG 205 (657)
Q Consensus 127 ~~~-~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 205 (657)
..| ..-+|.+++.+.++++..+..|..+|..++..-....- .-.-...+|.|++.|. ..+.+++..|+.+|.++..
T Consensus 43 ~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~-~V~~~G~Ip~LV~LL~--s~~~~vq~~Aa~AL~nLa~ 119 (584)
T 3l6x_A 43 PNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKT-DVRKLKGIPVLVGLLD--HPKKEVHLGACGALKNISF 119 (584)
T ss_dssp CCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH-HHHHTTHHHHHHHGGG--CSSHHHHHHHHHHHHHHTS
T ss_pred CCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHH-HHHHcCCcHHHHHHHC--CCCHHHHHHHHHHHHHHHc
Confidence 455 45679999999999999999999999888764311100 1112346799999998 6889999999999999764
Q ss_pred hchhhcCChhhHH-----HHHHHHHhhccC-CcHHHHHHHHHHHHHHHHHHH---HhhHHhHHHHHHHHHHH--------
Q 006201 206 FAQANFSNDMERD-----YIMRVVCEATLS-PEVKIRQAAFECLVAISSTYY---EKLAPYIQDIFNITAKA-------- 268 (657)
Q Consensus 206 ~~~~~~~~~~~~~-----~il~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~---~~~~~~~~~l~~~~~~~-------- 268 (657)
.- .+..+. -.++.|..++.. .+.+++..+..+|..++.... ..+...++.++..+..-
T Consensus 120 ~~-----~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~ 194 (584)
T 3l6x_A 120 GR-----DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREP 194 (584)
T ss_dssp SS-----CHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC---
T ss_pred cC-----CHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccc
Confidence 21 011112 245666666664 578889999989888876321 11112233333332110
Q ss_pred ------HhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCc
Q 006201 269 ------VREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGA 342 (657)
Q Consensus 269 ------~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~ 342 (657)
....+++++..|...+..++....+ .+..+.. ..-+++.|+..+...-.+.+ .+
T Consensus 195 ~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~----------------~R~~i~~-~~Gli~~LV~~L~~~~~~~~---~~ 254 (584)
T 3l6x_A 195 NEDCKPRHIEWESVLTNTAGCLRNVSSERSE----------------ARRKLRE-CDGLVDALIFIVQAEIGQKD---SD 254 (584)
T ss_dssp -------CCCCHHHHHHHHHHHHHHTSSCHH----------------HHHHHHH-STTHHHHHHHHHHHHHHTTC---CS
T ss_pred cccccccccccHHHHHHHHHHHHHHhcCCHH----------------HHHHHHH-cCCcHHHHHHHHHHhhcccC---cc
Confidence 0123568888899888888753211 0111111 11234444444432100000 00
Q ss_pred chHhhhHHHHHHHHHhhc---------------------------CCCc--hhchHHHHHhhhc-CcchhhHHHHHHHHH
Q 006201 343 WNIAMAGGTCLGLVARTV---------------------------GDDI--VPLVMPFVEENIT-KQEWRQREAATYAFG 392 (657)
Q Consensus 343 ~~~r~~a~~~L~~l~~~~---------------------------~~~~--~~~l~~~l~~~l~-~~~~~~r~aal~~l~ 392 (657)
......|..+|..|+... |-.. -+..++.+...+. +.++..+++|+.+|.
T Consensus 255 ~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~ 334 (584)
T 3l6x_A 255 SKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQ 334 (584)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 122333444554444321 0000 1223344444443 456889999999999
Q ss_pred HhhcCCCC--CcchHHH--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHcc
Q 006201 393 SILEGPSP--EKLVPLV--NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK 468 (657)
Q Consensus 393 ~i~~~~~~--~~~~~~~--~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~ 468 (657)
.++.+-.+ ..+...+ ...+|.|+..| .+++..|+..|+++|+.++.... ....+-...+|.|++.|.
T Consensus 335 nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL-~s~~~~v~~~A~~aL~nLs~~~~--------~~~~I~~g~ip~LV~LL~ 405 (584)
T 3l6x_A 335 NLCAGRWTYGRYIRSALRQEKALSAIADLL-TNEHERVVKAASGALRNLAVDAR--------NKELIGKHAIPNLVKNLP 405 (584)
T ss_dssp HHHSSCSHHHHHHHHHHTSHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCS--------CHHHHHHHHHHHHHHTSS
T ss_pred HHHcCCccccHHHHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHhCChh--------HHHHHHhCCHHHHHHHhc
Confidence 99875311 1111122 35689999999 99999999999999999998532 233445788999999887
Q ss_pred c---------chHHHHHHHHHHHHHHhhccCCCCCCCCCchhH-HHHHHHHHHhhccccchhhhHHHHHHHHHHHHHH
Q 006201 469 D---------VPNVAEKACGALYFLAQGFEDAISPSSPLTPFF-QEIVQALLTVTHREDAGESRLRTAAYETLNEVVR 536 (657)
Q Consensus 469 d---------~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~-~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~ 536 (657)
. +..++..||++|.+++..-. ..-.... ...++.|..++.+.+. ..+++..+..+|..+..
T Consensus 406 ~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~------~~~~~I~~~g~I~~Lv~LL~s~~~-~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 406 GGQQNSSWNFSEDTVISILNTINEVIAENL------EAAKKLRETQGIEKLVLINKSGNR-SEKEVRAAALVLQTIWG 476 (584)
T ss_dssp SSSCSGGGTCCHHHHHHHHHHHHHHHTTCH------HHHHHHHHTTHHHHHHHHHTCSSS-CHHHHHHHHHHHHHHHT
T ss_pred CCcccccccchHHHHHHHHHHHHHHhcCCH------HHHHHHHHCCChHHHHHHHhCCCC-ChHHHHHHHHHHHHHHc
Confidence 4 14678899999999875311 0011111 2567888888876421 24666788888888864
No 61
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.13 E-value=1.4e-09 Score=103.30 Aligned_cols=232 Identities=14% Similarity=0.136 Sum_probs=165.0
Q ss_pred HHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHH-HHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcC
Q 006201 221 MRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYG 299 (657)
Q Consensus 221 l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~ 299 (657)
++.+...+++++++++..++.+|..++...++....... ..++.+...+++.+++++..++..+..++....+..
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~---- 79 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI---- 79 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH----
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH----
Confidence 455677777788999999999999998876644444343 578888888999899999999999888876421110
Q ss_pred CCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCC---Cc-hhchHHHHHhh
Q 006201 300 GDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD---DI-VPLVMPFVEEN 375 (657)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~---~~-~~~l~~~l~~~ 375 (657)
..+.+ ...+|.++..+.. .+..+|..|..+|..++...++ .+ -.-.++.+.+.
T Consensus 80 -----------~~~~~---~~~i~~l~~ll~~---------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~ 136 (252)
T 4hxt_A 80 -----------KAIVD---AGGVEVLVKLLTS---------TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL 136 (252)
T ss_dssp -----------HHHHH---TTHHHHHHHHTTC---------SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred -----------HHHHH---CCCHHHHHHHHcC---------CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 01111 1356677766652 1247888899999998853221 11 12356666777
Q ss_pred hcCcchhhHHHHHHHHHHhhcCCCCCcchHHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcc
Q 006201 376 ITKQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQG 454 (657)
Q Consensus 376 l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 454 (657)
+.++++..|..++.+|+.++.+. +....... ...++.++..+ .++++.+|..+++++++++..... ....
T Consensus 137 l~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~-------~~~~ 207 (252)
T 4hxt_A 137 LTSTDSEVQKEAARALANIASGP-DEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPTS-------AIKA 207 (252)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSBHH-------HHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCcCHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHH-------HHHH
Confidence 78888999999999999999753 22211211 34789999999 999999999999999999874220 1111
Q ss_pred -cHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhc
Q 006201 455 -NCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGF 488 (657)
Q Consensus 455 -~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~ 488 (657)
.-..+++.+++.+.+ ++.++..|+++|.+++...
T Consensus 208 l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 208 IVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 123568889998886 6899999999999999864
No 62
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.13 E-value=5.5e-10 Score=106.15 Aligned_cols=230 Identities=16% Similarity=0.148 Sum_probs=160.9
Q ss_pred HHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHH-HHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcC
Q 006201 221 MRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYG 299 (657)
Q Consensus 221 l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~ 299 (657)
++.+...+.+++++++..++.+|..++....+.....+. ..++.++..+++.+++++..++..+..++....+..
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~---- 89 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI---- 89 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH----
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH----
Confidence 444455566788999999999998877665444433333 678888889999889999999999988886321110
Q ss_pred CCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCC---c-hhchHHHHHhh
Q 006201 300 GDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDD---I-VPLVMPFVEEN 375 (657)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~---~-~~~l~~~l~~~ 375 (657)
..+.+ ...+|.++..+.. .+..+|..|..+|..++...... + -.-.++.+...
T Consensus 90 -----------~~i~~---~g~i~~L~~lL~~---------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 146 (252)
T 4db8_A 90 -----------QAVID---AGALPALVQLLSS---------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 146 (252)
T ss_dssp -----------HHHHH---TTHHHHHHHGGGC---------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHG
T ss_pred -----------HHHHH---cCCHHHHHHHHcC---------CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHH
Confidence 01111 1357777776653 12578889999999987643211 1 12366777778
Q ss_pred hcCcchhhHHHHHHHHHHhhcCCCCCcchHHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcc
Q 006201 376 ITKQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQG 454 (657)
Q Consensus 376 l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 454 (657)
+.++++.+|..++.+|+.++.+. +......+ ...++.++..+ .++++.+|..|+++|+.++..-.. ....
T Consensus 147 L~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~-------~~~~ 217 (252)
T 4db8_A 147 LSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNE-------QKQA 217 (252)
T ss_dssp GGCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHGG-GCSSHHHHHHHHHHHHHHTTSCHH-------HHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHH-CCCCHHHHHHHHHHHHHHhcCCHH-------HHHH
Confidence 88889999999999999999753 22222222 35688999999 999999999999999999853220 1111
Q ss_pred cH-HHHHHHHHHHccc-chHHHHHHHHHHHHHHh
Q 006201 455 NC-QQIISVLLQSMKD-VPNVAEKACGALYFLAQ 486 (657)
Q Consensus 455 ~~-~~il~~l~~~l~d-~~~v~~~a~~al~~l~~ 486 (657)
.. ..+++.++..+.+ ++.++..|+++|.+++.
T Consensus 218 ~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 218 VKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 12 2477888888886 78999999999998753
No 63
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.11 E-value=2.7e-09 Score=101.29 Aligned_cols=235 Identities=12% Similarity=0.140 Sum_probs=165.4
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhH
Q 006201 176 LTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLA 255 (657)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 255 (657)
++.+++.+. +.++++|..|+.++.++...-++... .......++.+...+++++++++..++.+|..++...++...
T Consensus 4 i~~L~~~L~--~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 4 VEKLVKLLT--STDSETQKEAARDLAEIASGPASAIK-AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp HHHHHHHTT--CSCHHHHHHHHHHHHHHHTSCHHHHH-HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCcHHHH-HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 677888888 56699999999999998754221100 001123677888888888999999999999999876444333
Q ss_pred HhHH-HHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcC
Q 006201 256 PYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEE 334 (657)
Q Consensus 256 ~~~~-~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~ 334 (657)
.... ..++.+...+.+.++.++..++..+..++....+.. ..+.. ...+|.+++.+..
T Consensus 81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~---------------~~~~~---~~~i~~L~~~l~~--- 139 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI---------------KAIVD---AGGVEVLVKLLTS--- 139 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHH---------------HHHHH---TTHHHHHHHHTTC---
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH---------------HHHHH---CCCHHHHHHHHcC---
Confidence 3332 578888888888899999999999998885321110 01111 2456677766652
Q ss_pred ccccCCCcchHhhhHHHHHHHHHhhcCCC----chhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHH-HH
Q 006201 335 DQDQDEGAWNIAMAGGTCLGLVARTVGDD----IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV-NI 409 (657)
Q Consensus 335 d~~~d~~~~~~r~~a~~~L~~l~~~~~~~----~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~-~~ 409 (657)
.++.++..+..+|..++...+.. .-.-.++.+...+.++++.+|..++.+|+.++.+. +....... ..
T Consensus 140 ------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~ 212 (252)
T 4hxt_A 140 ------TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-TSAIKAIVDAG 212 (252)
T ss_dssp ------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB-HHHHHHHHHTT
T ss_pred ------CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCC
Confidence 12578888999999987643211 11235666777778888999999999999999742 22222222 24
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhc
Q 006201 410 ALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLH 442 (657)
Q Consensus 410 i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~ 442 (657)
.++.++..+ +++++.+|..|+++|++++....
T Consensus 213 ~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 213 GVEVLQKLL-TSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHHGG-GCSCHHHHHHHHHHHHHHHHTCB
T ss_pred CHHHHHHHH-CCCcHHHHHHHHHHHHHHHcCCC
Confidence 678899999 99999999999999999999764
No 64
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.11 E-value=7.7e-09 Score=107.07 Aligned_cols=365 Identities=11% Similarity=0.058 Sum_probs=220.3
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCC-----chHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccch
Q 006201 95 SFILKTLSSPAHDARSTASQVVAKVAGIELPHKQW-----PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQ 169 (657)
Q Consensus 95 ~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~-----~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~ 169 (657)
+.++..|.++++.++..++.+|..++... + +.+ ...+|.|++.+.++++..+..|..+|..++... ++ . .
T Consensus 5 ~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~-~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~-~~-~-k 79 (457)
T 1xm9_A 5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQD-E-SAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS-TT-N-K 79 (457)
T ss_dssp HHHHHHHHSSCTHHHHHHHHHHHHHTSSC-S-SHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC-HH-H-H
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCC-h-HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HH-H-H
Confidence 45778888889999999999999998644 2 122 567899999999999999999999999998742 11 1 1
Q ss_pred hh--HhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhc--------cC--------C
Q 006201 170 DH--VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEAT--------LS--------P 231 (657)
Q Consensus 170 ~~--~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~--------~~--------~ 231 (657)
.. -...+|.+++.+.. +.+++++..++.+|.++... ++ ...... ...++.+..++ .+ .
T Consensus 80 ~~i~~~G~i~~Lv~lL~~-~~~~~~~~~a~~aL~nLa~~-~~-~~~~i~-~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~ 155 (457)
T 1xm9_A 80 LETRRQNGIREAVSLLRR-TGNAEIQKQLTGLLWNLSST-DE-LKEELI-ADALPVLADRVIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp HHHHHTTCHHHHHHHHTT-CCCHHHHHHHHHHHHHHHTS-SS-THHHHH-HHHHHHHHHHTTHHHHTCC---------CC
T ss_pred HHHHHcCCHHHHHHHHhh-CCCHHHHHHHHHHHHHHhcC-HH-hHHHHH-hccHHHHHHHHhccccccccCccchhcccc
Confidence 11 13457888888873 45789999999999998764 21 111011 24555555555 22 2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhHHhHH--HHHHHHHHHHhc------CChHHHHHHHHHHHHHhHH---H----HHhhh
Q 006201 232 EVKIRQAAFECLVAISSTYYEKLAPYIQ--DIFNITAKAVRE------DEEPVALQAIEFWSSVCDE---E----IDILE 296 (657)
Q Consensus 232 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~l~~~~~~~~~~------~~~~v~~~a~~~~~~l~~~---~----~~~~~ 296 (657)
+.++...++.+|..++.. ++....... ..++.+...+.+ .++.++..++..+..++.. + .....
T Consensus 156 ~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~ 234 (457)
T 1xm9_A 156 DPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLE 234 (457)
T ss_dssp CHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcc
Confidence 456777999999999875 443222221 445555444432 3445555555554444310 0 00000
Q ss_pred h--------------cCCCC----C-C-CCCC----chhhHHHhh-hhhHHHHHHHHhhhhcCccccCCCcchHhhhHHH
Q 006201 297 E--------------YGGDF----S-G-DSDI----PCFYFIKHA-LPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGT 351 (657)
Q Consensus 297 ~--------------~~~~~----~-~-~~~~----~~~~~~~~~-l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~ 351 (657)
. +.... . + +..+ ....-.+.+ -...++.++..+....+ -.++..|..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~--------~~~~e~a~~ 306 (457)
T 1xm9_A 235 YNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKK--------DATLEACAG 306 (457)
T ss_dssp HTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCC--------HHHHHHHHH
T ss_pred cccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCC--------HHHHHHHHH
Confidence 0 00000 0 0 0000 000000000 12345555555553221 256677888
Q ss_pred HHHHHHhhcCC---C----ch--hchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCC
Q 006201 352 CLGLVARTVGD---D----IV--PLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDP 422 (657)
Q Consensus 352 ~L~~l~~~~~~---~----~~--~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~ 422 (657)
+|..++..-+. . .+ ...+|.+.+.+.+++.++|..|+++|+.++.. .+.....-...++.++..| .+.
T Consensus 307 aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~~~~~~i~~~~i~~Lv~lL-~~~ 383 (457)
T 1xm9_A 307 ALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PLLHRVMGNQVFPEVTRLL-TSH 383 (457)
T ss_dssp HHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--GGGHHHHHHHTHHHHHHTT-TSC
T ss_pred HHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--HHHHHHHHHhhhHHHHHhc-cCC
Confidence 88888754322 0 11 24567777788888899999999999999874 2222223356789999988 654
Q ss_pred c------HHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHcc-c-chHHHHHHHHHHHHHHh
Q 006201 423 N------NHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK-D-VPNVAEKACGALYFLAQ 486 (657)
Q Consensus 423 ~------~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-d-~~~v~~~a~~al~~l~~ 486 (657)
+ ..+..+++++++.+...-.. ....-.-...++.|...+. + +.+++..|++.|.++..
T Consensus 384 ~~~~~~~~~v~~~~l~~l~ni~~~~~~------~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 384 TGNTSNSEDILSSACYTVRNLMASQPQ------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS 449 (457)
T ss_dssp CSCSTTHHHHHHHHHHHHHHHHTTCTH------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhcCHH------HHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHc
Confidence 3 46888999999988754220 0000112467788888776 3 57899999999998875
No 65
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.11 E-value=1.1e-09 Score=104.00 Aligned_cols=232 Identities=17% Similarity=0.154 Sum_probs=161.2
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhH
Q 006201 176 LTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLA 255 (657)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 255 (657)
++.+...+. +.+++++..|+.++.+++..-.... ........++.+..++++++++++..++.+|..++...++...
T Consensus 14 ~~~~~~~L~--s~~~~~~~~a~~~L~~~l~~~~~~~-~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 14 LPQMTQQLN--SDDMQEQLSATRKFSQILSDGNEQI-QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp HHHHHHHHH--SSCSSHHHHHHHHHHHHHHHHHHHH-HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHHHHcCCCchH-HHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 455566666 5778899999999988665411110 0011123677888888888899999999999999875554433
Q ss_pred HhHH-HHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcC
Q 006201 256 PYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEE 334 (657)
Q Consensus 256 ~~~~-~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~ 334 (657)
..+. ..++.+...+++.++.++..++..+..++....... ..+. -...+|.+++.+..
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~---------------~~~~---~~~~i~~L~~lL~~--- 149 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI---------------QAVI---DAGALPALVQLLSS--- 149 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH---------------HHHH---HTTHHHHHHHGGGC---
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHH---------------HHHH---HCCCHHHHHHHHhC---
Confidence 3333 478888888999999999999999888876421100 0111 12467777776642
Q ss_pred ccccCCCcchHhhhHHHHHHHHHhhcCCC----chhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHH-H
Q 006201 335 DQDQDEGAWNIAMAGGTCLGLVARTVGDD----IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVN-I 409 (657)
Q Consensus 335 d~~~d~~~~~~r~~a~~~L~~l~~~~~~~----~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~-~ 409 (657)
.++.+|..|..+|..++...+.. .-.-+++.+.+.+.+++..+|..|+.+|+.++.+. +......+. .
T Consensus 150 ------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g 222 (252)
T 4db8_A 150 ------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAG 222 (252)
T ss_dssp ------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC-HHHHHHHHHTT
T ss_pred ------CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCC
Confidence 12578899999999988643211 11345666777778888999999999999998653 222222232 3
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 006201 410 ALNFMLTALMQDPNNHVKDTTAWTLGRMFE 439 (657)
Q Consensus 410 i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~ 439 (657)
.++.++..+ .++++.+|..|+++|++++.
T Consensus 223 ~i~~L~~ll-~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 223 ALEKLEQLQ-SHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHTTT-TCSSSHHHHTHHHHHHTTC-
T ss_pred cHHHHHHHh-CCCCHHHHHHHHHHHHHHhc
Confidence 788888999 99999999999999998764
No 66
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.09 E-value=1.8e-07 Score=99.21 Aligned_cols=402 Identities=11% Similarity=0.118 Sum_probs=249.0
Q ss_pred cCChHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHhhhcCC-CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhh
Q 006201 84 SLDSSVKAQIKSFILKTLSS--PAHDARSTASQVVAKVAGIELPH-KQWPELIGALLSNIHQLPPHTKQATLETLGYICE 160 (657)
Q Consensus 84 ~l~~~~~~~i~~~ll~~l~~--~~~~vr~~aa~~l~~i~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~ 160 (657)
.++...|+.|....+.+|.+ .+..+|..++.+|.++.....+. ..-.++.+.+...+.+++...+..|+..|..+..
T Consensus 284 Ci~~~cR~~I~~~~~~~L~~~l~~~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl 363 (778)
T 3opb_A 284 CIDETMRTYITENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSL 363 (778)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHTTSGGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTT
T ss_pred hCCcHHHHHHHHhHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC
Confidence 35666677776666555442 23688999999999998765331 2446788889999888776678999999998865
Q ss_pred hcc-ccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcC----------------------Ch-h-
Q 006201 161 EVS-SDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFS----------------------ND-M- 215 (657)
Q Consensus 161 ~~~-~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~----------------------~~-~- 215 (657)
... .+.+ ..-...++.++..+++ ..+..+...++.+|.++..+.+.... .. .
T Consensus 364 ~~~VKe~L--~~d~~~L~~Lv~llk~-~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~ 440 (778)
T 3opb_A 364 KASVKIMI--RSNESFTEILLTMIKS-QKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKA 440 (778)
T ss_dssp SSHHHHHH--HHCHHHHHHHHHHHTT-TCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHH
T ss_pred CHHHHHHH--HhCHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCccccccc
Confidence 431 1222 1224556677777763 24556788899999998875432100 00 0
Q ss_pred ---h----H-H-----HHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHH-HHHHHHHHHHhcCChH---HHH
Q 006201 216 ---E----R-D-----YIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEP---VAL 278 (657)
Q Consensus 216 ---~----~-~-----~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~---v~~ 278 (657)
. + . .+++.+..++..+++.++..+++++..++.. ++.-...++ +.++.++..+.+..+. .+.
T Consensus 441 ~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~ 519 (778)
T 3opb_A 441 AKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRI 519 (778)
T ss_dssp HHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHH
T ss_pred chHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHH
Confidence 0 0 0 1466677777788999999999999999754 332222332 5677777776654333 788
Q ss_pred HHHHHHHHHhHHH-HHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCcc-----ccCCCcchHhhhHHHH
Q 006201 279 QAIEFWSSVCDEE-IDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQ-----DQDEGAWNIAMAGGTC 352 (657)
Q Consensus 279 ~a~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~-----~~d~~~~~~r~~a~~~ 352 (657)
.|...+..+.... +...-. .+ .. ...+|.|+..+....+.+ +++.-.--.+..|..+
T Consensus 520 ~AA~ALArLlis~np~~~f~--------------~~--~~-~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~A 582 (778)
T 3opb_A 520 LGCRALTRMLIFTNPGLIFK--------------KY--SA-LNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLA 582 (778)
T ss_dssp HHHHHHHHHHHTSCHHHHSS--------------SS--CS-TTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHcC--------------CC--cc-ccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHH
Confidence 8888777766421 211100 00 00 145666666665211100 0001000125578888
Q ss_pred HHHHHhhcC-------CCchh--chHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcc-hHHH-------HHHHHHHH
Q 006201 353 LGLVARTVG-------DDIVP--LVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKL-VPLV-------NIALNFML 415 (657)
Q Consensus 353 L~~l~~~~~-------~~~~~--~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~-~~~~-------~~i~~~l~ 415 (657)
|..++..-+ ..++. ..++.+.+.+.+++..+|.+|+.+++.++... +.+ ..+. .+-++.++
T Consensus 583 LTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~--e~i~~k~~~~~~~~~~~rL~lLV 660 (778)
T 3opb_A 583 LTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHP--LTIAAKFFNLENPQSLRNFNILV 660 (778)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSG--GGTGGGTSCCSSHHHHHHHHHHH
T ss_pred HHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc--HHHHHHHHhhcCchhhccHHHHH
Confidence 888887642 22444 37788888888888999999999999998642 322 1111 12367888
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccH--HHHHHHHHHHccc---chHHHHHHHHHHHHHHhhccC
Q 006201 416 TALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNC--QQIISVLLQSMKD---VPNVAEKACGALYFLAQGFED 490 (657)
Q Consensus 416 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~--~~il~~l~~~l~d---~~~v~~~a~~al~~l~~~~~~ 490 (657)
..+ ...+..+|.+|.++++.++...+. .....+ ...++.++..+++ ++.+|.+++.++.++.+....
T Consensus 661 ~Ll-~s~D~~~r~AAagALAnLts~~~~-------ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~ 732 (778)
T 3opb_A 661 KLL-QLSDVESQRAVAAIFANIATTIPL-------IAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPD 732 (778)
T ss_dssp HGG-GCSCHHHHHHHHHHHHHHHHHCHH-------HHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCS
T ss_pred HHH-cCCCHHHHHHHHHHHHHhcCCChH-------HHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhcc
Confidence 889 889999999999999999653320 111111 2445555555554 689999999999999974321
Q ss_pred CCCCCCCCchhH--HHHHHHHHHhhcccc
Q 006201 491 AISPSSPLTPFF--QEIVQALLTVTHRED 517 (657)
Q Consensus 491 ~~~~~~~l~~~~--~~i~~~L~~~l~~~~ 517 (657)
. ..+..+..+. ..+...|.+++...+
T Consensus 733 ~-~~~~~~~~~~~~~~l~~~l~~~lk~~~ 760 (778)
T 3opb_A 733 N-GTNEVYPLLQENQKLKDALNMSLKRGD 760 (778)
T ss_dssp T-TTTSCCHHHHSCHHHHHHHHHHHSSSS
T ss_pred C-CChHHHHHHhcChHHHHHHHHHHhCCC
Confidence 1 2234555554 466677777776554
No 67
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.07 E-value=6.9e-09 Score=94.60 Aligned_cols=184 Identities=18% Similarity=0.202 Sum_probs=136.4
Q ss_pred HHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhh
Q 006201 218 DYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEE 297 (657)
Q Consensus 218 ~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~ 297 (657)
....+.++..+.++++.+|..++..|+.+.. +..++.+...+.+.++.+|..++..+..+...
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~------- 75 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE------- 75 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-------
Confidence 4566677788889999999999999997643 12344555667788999999999877665431
Q ss_pred cCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhc
Q 006201 298 YGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENIT 377 (657)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~ 377 (657)
..++.+...+.+ .++.+|..|..+|..+.. +..++.+...+.
T Consensus 76 ----------------------~~~~~L~~~l~d---------~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~ 117 (201)
T 3ltj_A 76 ----------------------RAVEPLIKALKD---------EDGWVRQSAAVALGQIGD-------ERAVEPLIKALK 117 (201)
T ss_dssp ----------------------GGHHHHHHHTTC---------SSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTT
T ss_pred ----------------------HHHHHHHHHHcC---------CCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHc
Confidence 224445554431 225789988888877643 335566667778
Q ss_pred CcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHH
Q 006201 378 KQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQ 457 (657)
Q Consensus 378 ~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~ 457 (657)
+++|.+|.+++.+|+.+... ..++.+...+ +|+++.||.+|+++++.+.. +
T Consensus 118 d~~~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l-~d~~~~vr~~A~~aL~~~~~-----------------~ 168 (201)
T 3ltj_A 118 DEDWFVRIAAAFALGEIGDE-----------RAVEPLIKAL-KDEDGWVRQSAADALGEIGG-----------------E 168 (201)
T ss_dssp CSSHHHHHHHHHHHHHHTCG-----------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCS-----------------H
T ss_pred CCCHHHHHHHHHHHHHhCCH-----------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc-----------------h
Confidence 99999999999999998641 2357788889 99999999999999998732 3
Q ss_pred HHHHHHHHHccc-chHHHHHHHHHHHHHH
Q 006201 458 QIISVLLQSMKD-VPNVAEKACGALYFLA 485 (657)
Q Consensus 458 ~il~~l~~~l~d-~~~v~~~a~~al~~l~ 485 (657)
..++.|...+.| ++.||..|..+|..+-
T Consensus 169 ~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 169 RVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 456677777776 6899999999998763
No 68
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.06 E-value=6.8e-08 Score=100.76 Aligned_cols=368 Identities=13% Similarity=0.062 Sum_probs=222.1
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCC---CCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhh
Q 006201 95 SFILKTLSSPAHDARSTASQVVAKVAGIELPHK---QWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDH 171 (657)
Q Consensus 95 ~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~---~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~ 171 (657)
+.+++.|.++++.++..++.+|..++....+.. .-...+|.|++.+.+++..+++.|..+|..++..-+++ . ...
T Consensus 51 ~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~-n-k~~ 128 (584)
T 3l6x_A 51 PEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD-N-KIA 128 (584)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH-H-HHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH-H-HHH
Confidence 467788999999999999999999986431100 11367899999999999999999999999998631011 1 111
Q ss_pred --HhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhc------------------cCC
Q 006201 172 --VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEAT------------------LSP 231 (657)
Q Consensus 172 --~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~------------------~~~ 231 (657)
-...+|.|+..|.+ ..+.+++..+..+|.++... ++ .. .......++.|..++ ...
T Consensus 129 I~~~GaIp~LV~LL~s-~~~~~~~e~aa~aL~nLS~~-~~-~k-~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~ 204 (584)
T 3l6x_A 129 IKNCDGVPALVRLLRK-ARDMDLTEVITGTLWNLSSH-DS-IK-MEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIE 204 (584)
T ss_dssp HHHTTHHHHHHHHHHH-CCSHHHHHHHHHHHHHHTTS-GG-GH-HHHHHHTHHHHHHHTHHHHHCCC----------CCC
T ss_pred HHHcCCHHHHHHHHcC-CCCHHHHHHHHHHHHHHhCC-ch-hh-HHHHhccHHHHHHHHhcccccccccccccccccccc
Confidence 13457788888873 35788999999999887642 11 00 000112233333322 123
Q ss_pred cHHHHHHHHHHHHHHHHHHHH---hhHH---hHHHHHHHHHHHHh--cCChHHHHHHHHHHHHHhHHHH-Hh--hhhcCC
Q 006201 232 EVKIRQAAFECLVAISSTYYE---KLAP---YIQDIFNITAKAVR--EDEEPVALQAIEFWSSVCDEEI-DI--LEEYGG 300 (657)
Q Consensus 232 ~~~~~~~~~~~l~~l~~~~~~---~~~~---~~~~l~~~~~~~~~--~~~~~v~~~a~~~~~~l~~~~~-~~--~~~~~~ 300 (657)
+.+++..+..+|..++...++ .+.. .++.++.++-..+. +.+......|+..+..++.... +. ..++..
T Consensus 205 d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~ 284 (584)
T 3l6x_A 205 WESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQE 284 (584)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC---
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 679999999999999865432 1211 12233333332221 2445667777777666663311 00 000000
Q ss_pred C----CCCCCCCchhhHHHhh-hhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCC---C---ch--hc
Q 006201 301 D----FSGDSDIPCFYFIKHA-LPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD---D---IV--PL 367 (657)
Q Consensus 301 ~----~~~~~~~~~~~~~~~~-l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~---~---~~--~~ 367 (657)
. ..+........ +... -...++.++..+.... ...++..|..+|..++..-+. . .+ ..
T Consensus 285 ~~~~~~~~~~~~~~~G-ve~L~~~~~v~~Ll~LL~~s~--------~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~ 355 (584)
T 3l6x_A 285 AAPNVANNTGTSPARG-YELLFQPEVVRIYISLLKESK--------TPAILEASAGAIQNLCAGRWTYGRYIRSALRQEK 355 (584)
T ss_dssp -----------CCCCG-GGGGGSHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHH
T ss_pred hcccccccccccCchh-HHHHhcccHHHHHHHHHccCC--------CHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcC
Confidence 0 00000000000 0000 1234556666554321 136777888899888753210 1 11 23
Q ss_pred hHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHHHHh
Q 006201 368 VMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDP--------NNHVKDTTAWTLGRMFE 439 (657)
Q Consensus 368 l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~--------~~~vr~~a~~~l~~l~~ 439 (657)
.+|.|.+.+.+++..++.+|+.+|+.++.+. ..-..+-...+|.++..| .+. +..++..|++++++++.
T Consensus 356 glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~--~~~~~I~~g~ip~LV~LL-~~~~~~~~~~~s~~v~~~a~~tL~NL~a 432 (584)
T 3l6x_A 356 ALSAIADLLTNEHERVVKAASGALRNLAVDA--RNKELIGKHAIPNLVKNL-PGGQQNSSWNFSEDTVISILNTINEVIA 432 (584)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHTS-SSSSCSGGGTCCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh--hHHHHHHhCCHHHHHHHh-cCCcccccccchHHHHHHHHHHHHHHhc
Confidence 4677778888888899999999999999864 222333456889999998 654 46788999999999875
Q ss_pred hhccCcCCCccCCcccHHHHHHHHHHHccc---chHHHHHHHHHHHHHHh
Q 006201 440 FLHGSTLETPIINQGNCQQIISVLLQSMKD---VPNVAEKACGALYFLAQ 486 (657)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~il~~l~~~l~d---~~~v~~~a~~al~~l~~ 486 (657)
.-.. ....-.-...+|.|+..+.+ .+.++..|+++|.++..
T Consensus 433 ~~~~------~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 433 ENLE------AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp TCHH------HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred CCHH------HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 4220 01111123568888888874 47899999999999875
No 69
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.05 E-value=3.9e-09 Score=97.12 Aligned_cols=188 Identities=18% Similarity=0.190 Sum_probs=135.8
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHh
Q 006201 174 KILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEK 253 (657)
Q Consensus 174 ~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 253 (657)
..++.+...+. ++++.+|..|+.+|+.+-. ...++.+...+.++++.+|..++..|+.+..
T Consensus 19 ~~~~~L~~~L~--~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----- 79 (211)
T 3ltm_A 19 EKVEMYIKNLQ--DDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----- 79 (211)
T ss_dssp GGHHHHHHHTT--CSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----
T ss_pred hHHHHHHHHHc--CCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----
Confidence 34566777777 7899999999999987421 1345556677778899999999999988642
Q ss_pred hHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhc
Q 006201 254 LAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQE 333 (657)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ 333 (657)
+..++.+...+.+.++.+|..++..+..+... ..++.+...+.
T Consensus 80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-----------------------------~~~~~L~~~l~--- 122 (211)
T 3ltm_A 80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE-----------------------------RAVEPLIKALK--- 122 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----------------------------GGHHHHHHHTT---
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-----------------------------HHHHHHHHHHh---
Confidence 12344555667889999999999877665431 23445555443
Q ss_pred CccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHH
Q 006201 334 EDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNF 413 (657)
Q Consensus 334 ~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~ 413 (657)
+.++.+|..|..+|..+.. +..++.+...+.++++.+|.+++.+|+.+.. +..++.
T Consensus 123 ------d~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~ 178 (211)
T 3ltm_A 123 ------DEDWFVRIAAAFALGEIGD-------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAA 178 (211)
T ss_dssp ------CSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHH
T ss_pred ------CCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHH
Confidence 1236899999999888742 3455666677788999999999999999853 445677
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhhc
Q 006201 414 MLTALMQDPNNHVKDTTAWTLGRMFEFLH 442 (657)
Q Consensus 414 l~~~l~~d~~~~vr~~a~~~l~~l~~~~~ 442 (657)
+...+ +|+++.||.+|..+|+++.....
T Consensus 179 L~~~l-~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 179 MEKLA-ETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp HHHHH-HHCCHHHHHHHHHHHHC------
T ss_pred HHHHH-hCCCHHHHHHHHHHHHhcCCCCC
Confidence 88888 89999999999999998887653
No 70
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.05 E-value=1.1e-08 Score=112.11 Aligned_cols=268 Identities=14% Similarity=0.222 Sum_probs=202.1
Q ss_pred HHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHH--HhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhh
Q 006201 219 YIMRVVCEATLSPEVKIRQAAFECLVAISSTYY--EKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILE 296 (657)
Q Consensus 219 ~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~ 296 (657)
.++..+...+.+.... ..++..+..+++..+ .-+.||+-.+++.++....|....+|..|......++..-+
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~---- 127 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVN---- 127 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSC----
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCC----
Confidence 4666666666543223 788888888886653 24678888889999999999889999988877777765320
Q ss_pred hcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCC---CchhchHHHHH
Q 006201 297 EYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD---DIVPLVMPFVE 373 (657)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~ 373 (657)
...+..++|.++..|.. ...|..+.+|..+++.++...++ ..+|.++|.+.
T Consensus 128 ------------------~~a~~~~~~~~~~~~~~--------~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~ 181 (986)
T 2iw3_A 128 ------------------PVAIKALLPHLTNAIVE--------TNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLS 181 (986)
T ss_dssp ------------------GGGHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHHHhcc--------ccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchH
Confidence 11124567778777742 12499999999999999987764 34899999999
Q ss_pred hhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCc
Q 006201 374 ENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQ 453 (657)
Q Consensus 374 ~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 453 (657)
+.+.|....++.+|..++-.++...+...+.+++ |.+++++ .+|.. | -.|+..++....- .....
T Consensus 182 ~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~----~~~~~~~-~~p~~-~----~~~~~~l~~~tfv-----~~v~~ 246 (986)
T 2iw3_A 182 ETMWDTKKEVKAAATAAMTKATETVDNKDIERFI----PSLIQCI-ADPTE-V----PETVHLLGATTFV-----AEVTP 246 (986)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGH----HHHHHHH-HCTTH-H----HHHHHHHTTCCCC-----SCCCH
T ss_pred hhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhH----HHHHHHh-cChhh-h----HHHHHHhhcCeeE-----eeecc
Confidence 9999999999999999999988876666777765 6667777 66643 2 3344444443221 23667
Q ss_pred ccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHH
Q 006201 454 GNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLN 532 (657)
Q Consensus 454 ~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~ 532 (657)
+.+.-++|.|.++|.+ ...++..++-.+.++|+-..+ +....||++.++|.+.+...... ++.+|+.+-.|+.
T Consensus 247 ~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~----~~~~~~f~~~l~p~~~~~~~~~~--~pe~r~~~~~a~~ 320 (986)
T 2iw3_A 247 ATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVED----PQVIAPFLGKLLPGLKSNFATIA--DPEAREVTLRALK 320 (986)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCC----HHHHHHHHTTTHHHHHHHTTTCC--SHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCC----HHHHhhhhhhhhhHHHHHhhccC--CHHHHHHHHHHHH
Confidence 8899999999999997 577888899999999987644 67788999999999999888766 5788888888888
Q ss_pred HHHHhcc
Q 006201 533 EVVRCST 539 (657)
Q Consensus 533 ~l~~~~~ 539 (657)
++.+..+
T Consensus 321 ~l~~~~~ 327 (986)
T 2iw3_A 321 TLRRVGN 327 (986)
T ss_dssp HHHHHHT
T ss_pred HHHHhhc
Confidence 8866644
No 71
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.02 E-value=2.2e-08 Score=92.06 Aligned_cols=186 Identities=17% Similarity=0.156 Sum_probs=143.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcc
Q 006201 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWL 83 (657)
Q Consensus 4 ~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~ 83 (657)
.+..++..+.++|+.+|..|...|.++.. +..+..|...+.+ .+..+|..|+..|.+.-.
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~---~~~~~~L~~~l~~--~~~~vr~~a~~aL~~~~~--------------- 79 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD---ERAVEPLIKALKD--EDAWVRRAAADALGQIGD--------------- 79 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC---GGGHHHHHHHTTC--SCHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCC---ccHHHHHHHHHcC--CCHHHHHHHHHHHHhhCC---------------
Confidence 35667777888999999999999998855 5777888888886 489999999999987432
Q ss_pred cCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcc
Q 006201 84 SLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVS 163 (657)
Q Consensus 84 ~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~ 163 (657)
+ ...+.|...+.++++.+|..++.+|+.+.. ++.++.|...+.++++.+|..++.+|+.+..
T Consensus 80 ---~----~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 141 (211)
T 3ltm_A 80 ---E----RAVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 141 (211)
T ss_dssp ---G----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred ---H----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence 1 123466778899999999999999987642 4678899999999999999999999988632
Q ss_pred ccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHH
Q 006201 164 SDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECL 243 (657)
Q Consensus 164 ~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l 243 (657)
...++.+...+. |+++.||..++.+|+.+-. ...++.+...++++++.+|..+.+.|
T Consensus 142 ---------~~~~~~L~~~l~--d~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL 198 (211)
T 3ltm_A 142 ---------ERAVEPLIKALK--DEDGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNYL 198 (211)
T ss_dssp ---------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHc--CCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 113556667777 7889999999999998521 34666667777788999999999999
Q ss_pred HHHHHHH
Q 006201 244 VAISSTY 250 (657)
Q Consensus 244 ~~l~~~~ 250 (657)
..+....
T Consensus 199 ~~~~~~~ 205 (211)
T 3ltm_A 199 ETHKSFN 205 (211)
T ss_dssp HC-----
T ss_pred HhcCCCC
Confidence 9876554
No 72
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.99 E-value=3.1e-08 Score=90.17 Aligned_cols=181 Identities=17% Similarity=0.149 Sum_probs=143.6
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhccc
Q 006201 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLS 84 (657)
Q Consensus 5 l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~ 84 (657)
...+++.+.++|+.+|..|...|.++.. +..+..|...+.+ .++.+|..|+..|.+.-.
T Consensus 16 ~~~~i~~L~~~~~~vr~~A~~~L~~~~~---~~~~~~L~~~l~~--~~~~vr~~a~~~L~~~~~---------------- 74 (201)
T 3ltj_A 16 VEMYIKNLQDDSYYVRRAAAYALGKIGD---ERAVEPLIKALKD--EDAWVRRAAADALGQIGD---------------- 74 (201)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHCC---GGGHHHHHHHTTC--SSHHHHHHHHHHHHHHCC----------------
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHcC--CCHHHHHHHHHHHHhhCC----------------
Confidence 4678888899999999999999998864 4677888888875 488999999999887432
Q ss_pred CChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccc
Q 006201 85 LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSS 164 (657)
Q Consensus 85 l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~ 164 (657)
+ ...+.+...+.++++.+|..++.+|+.+.. ++.++.+...+.++++.+|..++.+|+.+..
T Consensus 75 --~----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 75 --E----RAVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp --G----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred --H----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 1 123566778899999999999999988642 4678889999999999999999999988632
Q ss_pred cccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHH
Q 006201 165 DAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLV 244 (657)
Q Consensus 165 ~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~ 244 (657)
...++.+...+. |+++.||..|+.+|+.+- . ...++.+...++++++.+|..+.+.|.
T Consensus 137 --------~~~~~~L~~~l~--d~~~~vr~~A~~aL~~~~--------~----~~~~~~L~~~l~d~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 137 --------ERAVEPLIKALK--DEDGWVRQSAADALGEIG--------G----ERVRAAMEKLAETGTGFARKVAVNYLE 194 (201)
T ss_dssp --------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHC--------S----HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHc--CCCHHHHHHHHHHHHHhC--------c----hhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 123556677777 788999999999999851 1 346666666777889999999999988
Q ss_pred HH
Q 006201 245 AI 246 (657)
Q Consensus 245 ~l 246 (657)
.+
T Consensus 195 ~l 196 (201)
T 3ltj_A 195 TH 196 (201)
T ss_dssp HC
T ss_pred HH
Confidence 75
No 73
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.95 E-value=1e-07 Score=96.99 Aligned_cols=220 Identities=14% Similarity=0.074 Sum_probs=143.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhHHh--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHH-HHHhhhhcCCCCCCCCCC
Q 006201 232 EVKIRQAAFECLVAISSTYYEKLAPY--IQDIFNITAKAVREDEEPVALQAIEFWSSVCDE-EIDILEEYGGDFSGDSDI 308 (657)
Q Consensus 232 ~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~-~~~~~~~~~~~~~~~~~~ 308 (657)
++.++..+..+|..++......-... ....++.++..+.+.+++++..+...+..++.. ..+
T Consensus 213 ~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~--------------- 277 (458)
T 3nmz_A 213 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVN--------------- 277 (458)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHH---------------
T ss_pred CHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHH---------------
Confidence 46788999999999986543221111 246788888889988999999999888888642 000
Q ss_pred chhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcC---CCc--hhchHHHHHhhhcCcc---
Q 006201 309 PCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVG---DDI--VPLVMPFVEENITKQE--- 380 (657)
Q Consensus 309 ~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~---~~~--~~~l~~~l~~~l~~~~--- 380 (657)
.+..+.. ...+|.+++.+.... +..++..|..+|..++.... ..+ ..-.+|.+...+.+.+
T Consensus 278 -~k~~I~~--~GaI~~LV~lLl~s~--------~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~ 346 (458)
T 3nmz_A 278 -SKKTLRE--VGSVKALMECALEVK--------KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTN 346 (458)
T ss_dssp -HHHHHHH--TTHHHHHHHHHTTCC--------SHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSS
T ss_pred -HHHHHHH--cCCHHHHHHHHhcCC--------CHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcc
Confidence 1111111 134566666543211 13566778888888887321 111 1234455555554432
Q ss_pred h-hhHHHHHHHHHHhhc---CCCCCcchHHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCccc
Q 006201 381 W-RQREAATYAFGSILE---GPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGN 455 (657)
Q Consensus 381 ~-~~r~aal~~l~~i~~---~~~~~~~~~~~-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 455 (657)
| .+++.|+.+|..++. +. .+...... ...++.++..| .+.+..++..|+|+|++++..-. .....
T Consensus 347 ~~~v~~~A~~aL~nLs~~~a~~-~~~~~~i~~~G~i~~Lv~LL-~~~~~~v~~~A~~aL~nLa~~~~--------~~~~~ 416 (458)
T 3nmz_A 347 TLAIIESGGGILRNVSSLIATN-EDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNP--------KDQEA 416 (458)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHS-SCSCHHHHHHHHHHHHHHHSSCH--------HHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHcccHHHHHHHH-cCCChHHHHHHHHHHHHHHcCCH--------HHHHH
Confidence 2 578888899988875 32 22222222 24689999999 99999999999999999985321 11222
Q ss_pred H--HHHHHHHHHHccc-chHHHHHHHHHHHHHHhh
Q 006201 456 C--QQIISVLLQSMKD-VPNVAEKACGALYFLAQG 487 (657)
Q Consensus 456 ~--~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~ 487 (657)
+ ...+|.|+..|.. ++.++..|+++|.+++..
T Consensus 417 i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 417 LWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 2 4568899998875 789999999999999875
No 74
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.87 E-value=4.6e-06 Score=88.54 Aligned_cols=473 Identities=8% Similarity=0.055 Sum_probs=257.6
Q ss_pred HHHHHHHhcC-CCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhc--CCChhHHHHHHHHHHHHhhhccccccch
Q 006201 93 IKSFILKTLS-SPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIH--QLPPHTKQATLETLGYICEEVSSDAVEQ 169 (657)
Q Consensus 93 i~~~ll~~l~-~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~~l~~l~~i~~~~~~~~l~~ 169 (657)
+...+...+. .++..++-.+...+..+.++. ..||+ +.+++..+. ...+++|..++.++..+.+.+ ++.+ .
T Consensus 133 ll~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~---~~~~~-~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~-~~~~-~ 206 (778)
T 3opb_A 133 LLNELQIRIHYGEDTHVTYLLSIILQLLNKFK---YNFKE-VRFLVKELILRISEDEVKSMMLIIFAELQSSF-QKDF-D 206 (778)
T ss_dssp HHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC---CCSTT-TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHH-HHHH-H
T ss_pred HHHHHHHHhhcCCCcchhHHHHHHHHHHHHcC---ccccc-hhhHHHHhccccChhhhHHHHHHHHHHHHHhC-chHH-H
Confidence 3333433433 444566766666666666654 37777 777777653 456789999999999888877 4444 3
Q ss_pred hhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhch----hhcCChhhHHHHHHHHHhhc-cCCcHHHHHHHHHHHH
Q 006201 170 DHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQ----ANFSNDMERDYIMRVVCEAT-LSPEVKIRQAAFECLV 244 (657)
Q Consensus 170 ~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~----~~~~~~~~~~~il~~l~~~~-~~~~~~~~~~~~~~l~ 244 (657)
+.+...+..++---.. +.+.+-...++.++..+.+..+ ..|..+.+ .+.+.+.+ ...+..+..++++.+.
T Consensus 207 ~~~~~~~~~l~~e~~~-~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~----~~~l~~~~~~~~~~~~~~a~L~lLs 281 (778)
T 3opb_A 207 KAVVDFMSSLIVEAEI-DVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGL----SKLFKKRVFEEQDLQFTKELLRLLS 281 (778)
T ss_dssp HHHHHHHHHHHHHHHH-TCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTH----HHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcc-CCCCccHHHHHHHHHHHhcCCHHHHHHHHccccH----HHHHHHHHhcccchHHHHHHHHHHH
Confidence 4444445433211111 2122223446666666655443 33443333 33333333 3456677778888887
Q ss_pred HHHHHHHHhhHHhH-HHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHH
Q 006201 245 AISSTYYEKLAPYI-QDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVP 323 (657)
Q Consensus 245 ~l~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 323 (657)
..+....- ..++ ...++.+...+++ +.+|..|...+..+..... .. ...+.++.+
T Consensus 282 aACi~~~c--R~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~--------~~------------~~si~~La~ 337 (778)
T 3opb_A 282 SACIDETM--RTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTK--------LT------------CINLKQLSE 337 (778)
T ss_dssp HHCCSHHH--HHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGT--------CT------------TCCHHHHHH
T ss_pred HHhCCcHH--HHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCC--------CC------------cCcHHHHHH
Confidence 76643221 2222 3344444455543 5777777766555543210 00 011234555
Q ss_pred HHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcC--CCc--hhchHHHHHhhhcC-cchhhHHHHHHHHHHhhcCC
Q 006201 324 LLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVG--DDI--VPLVMPFVEENITK-QEWRQREAATYAFGSILEGP 398 (657)
Q Consensus 324 ~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~--~~~--~~~l~~~l~~~l~~-~~~~~r~aal~~l~~i~~~~ 398 (657)
.+.+++...+. ..|..|.+.|..++.... +.+ -+.+++.+.+.+.+ .+...-++++..++.+....
T Consensus 338 ~~~~~L~~~~~---------~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~ 408 (778)
T 3opb_A 338 IFINAISRRIV---------PKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLP 408 (778)
T ss_dssp HHHHHTTTCCH---------HHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCC
T ss_pred HHHHHHhcCCc---------cHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCC
Confidence 66666653211 115556666655543210 000 01222223333332 33455666777777666532
Q ss_pred CC------------------------C-c-ch--HHH----------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Q 006201 399 SP------------------------E-K-LV--PLV----------NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEF 440 (657)
Q Consensus 399 ~~------------------------~-~-~~--~~~----------~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~ 440 (657)
.. + . .. ..+ ..++|.++..+ +++++.+|..++++++.++..
T Consensus 409 ~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll-~S~s~~~re~A~~aL~nLS~d 487 (778)
T 3opb_A 409 EEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREM-HNLSPNCKQQVVRIIYNITRS 487 (778)
T ss_dssp CCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHG-GGSCHHHHHHHHHHHHHHHTS
T ss_pred cccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCC
Confidence 10 0 0 00 000 13678888888 889999999999999999875
Q ss_pred hccCcCCCccCCccc-HHHHHHHHHHHcccc-h---HHHHHHHHHHHHHHhhccCCC-CCCCCCchhHHHHHHHHHHhhc
Q 006201 441 LHGSTLETPIINQGN-CQQIISVLLQSMKDV-P---NVAEKACGALYFLAQGFEDAI-SPSSPLTPFFQEIVQALLTVTH 514 (657)
Q Consensus 441 ~~~~~~~~~~~~~~~-~~~il~~l~~~l~d~-~---~v~~~a~~al~~l~~~~~~~~-~~~~~l~~~~~~i~~~L~~~l~ 514 (657)
-. ..... -+..++.|+..+.+. . .++..|+.||.++.-...+.. +.+. .+ ...++.|+.++.
T Consensus 488 ~~--------~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~--~~--~~aI~pLv~LL~ 555 (778)
T 3opb_A 488 KN--------FIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKY--SA--LNAIPFLFELLP 555 (778)
T ss_dssp GG--------GHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSS--CS--TTHHHHHHHTSC
T ss_pred HH--------HHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCC--cc--ccchHHHHHHcC
Confidence 32 11222 246688888888752 2 379999999999985432110 0011 11 167888888887
Q ss_pred c-ccchh----------hhHHHHHHHHHHHHHHhccc---cc-HHHHH--HHHHHHHHHHHHHHhhhcCChhHHHHHHHH
Q 006201 515 R-EDAGE----------SRLRTAAYETLNEVVRCSTD---ET-APMVM--QLVPLIMMELHQTLEAQKLSSDEREKQNEI 577 (657)
Q Consensus 515 ~-~~~~~----------~~~~~~~~~al~~l~~~~~~---~~-~~~~~--~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 577 (657)
. .+... ...+.+++.||+.++..... +. ...+. ..+|.+.+.+. ++.. .+
T Consensus 556 ~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~--------s~n~-----~V 622 (778)
T 3opb_A 556 RSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLML--------DENV-----PL 622 (778)
T ss_dssp CSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGG--------CSSH-----HH
T ss_pred CCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHh--------CCCH-----HH
Confidence 2 22100 01155899999999987632 21 22232 24444444332 1111 46
Q ss_pred HHHHHHHHHHHHHHhCCCcchhhHhh----HHHHHHHHHHHHHHcccCCcchhhHHHHHHHHHHH
Q 006201 578 QGLLCGCLQVIIQKLGSSEQTKYVFM----QYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYA 638 (657)
Q Consensus 578 ~~~~~~~l~~l~~~~~~~~~~~~~~~----~~~~~i~~~l~~~l~~~~~~v~~~~~~~l~~l~~~ 638 (657)
|..+++++..++..-..- -..|. |-...=++.++..+...+.++|+.|..+++.+...
T Consensus 623 rrAA~elI~NL~~~~e~i---~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~ 684 (778)
T 3opb_A 623 QRSTLELISNMMSHPLTI---AAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT 684 (778)
T ss_dssp HHHHHHHHHHHHTSGGGT---GGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHH---HHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence 778999999998632210 00022 11122377888888888889999999888888643
No 75
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.86 E-value=3.3e-08 Score=90.76 Aligned_cols=193 Identities=17% Similarity=0.109 Sum_probs=141.4
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCC---CCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccch
Q 006201 93 IKSFILKTLSSPAHDARSTASQVVAKVAGIELPHK---QWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQ 169 (657)
Q Consensus 93 i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~---~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~ 169 (657)
....+...+.++++.+|..++.+|+.++....... .-...+|.+.+.+.++++.++..++.+|..++... ++....
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~ 91 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQA 91 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHHH
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHH
Confidence 44577888999999999999999999996431100 11367899999999999999999999999997543 221101
Q ss_pred hhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHH
Q 006201 170 DHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISST 249 (657)
Q Consensus 170 ~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 249 (657)
-.-...+|.++..+. +.++.+|..|+.++.++...-+.... .......++.+..++++++++++..++.+|..++..
T Consensus 92 i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 92 VIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQIQ-AVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHTTCHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHH-HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHCCCHHHHHHHHc--CCcHHHHHHHHHHHHHHHcCCHHHHH-HHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 112346788888888 67899999999999998653221110 001123677888888888999999999999999876
Q ss_pred HHHhhHHhHH-HHHHHHHHHHhcCChHHHHHHHHHHHHHhH
Q 006201 250 YYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCD 289 (657)
Q Consensus 250 ~~~~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~ 289 (657)
.++....... ..++.+...+.+.+++++..|..++..+++
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 4544333332 578888888889999999999998887763
No 76
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=98.85 E-value=5.3e-05 Score=87.74 Aligned_cols=447 Identities=11% Similarity=0.041 Sum_probs=232.3
Q ss_pred CChHHHHHHHHHHHHHHhc----CcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHH
Q 006201 15 VDGTVRKQAEESLKQYQEQ----NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVK 90 (657)
Q Consensus 15 ~d~~~r~~A~~~L~~~~~~----~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~ 90 (657)
+++.+|.+.-+.+..+.+. +||+++..|.+.+.+ ++..+..+..+|+...+... .+..+...-+
T Consensus 108 ~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~---~~~~~e~~L~iL~~L~Eev~---------~~~~~~~~r~ 175 (1204)
T 3a6p_A 108 EENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ---GETQTELVMFILLRLAEDVV---------TFQTLPPQRR 175 (1204)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHHH---------TSCCSCHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHc---------cccchHHHHH
Confidence 3578999988888876654 588999999988865 34567777777777644211 1111222222
Q ss_pred H-----------HHHHHHHHhcCCC-------------------ChHHHHHHHHHHHHHHhhhcCC----CCCchHHHHH
Q 006201 91 A-----------QIKSFILKTLSSP-------------------AHDARSTASQVVAKVAGIELPH----KQWPELIGAL 136 (657)
Q Consensus 91 ~-----------~i~~~ll~~l~~~-------------------~~~vr~~aa~~l~~i~~~~~~~----~~~~~l~~~l 136 (657)
. .|...+.+.+.+. +..++..+-.++....... |. ..-+.+++.+
T Consensus 176 ~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi-~~~~i~~~~~~ll~~l 254 (1204)
T 3a6p_A 176 RDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWV-SMSHITAENCKLLEIL 254 (1204)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTS-CHHHHHTTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhcc-CHHHHHhccchHHHHH
Confidence 2 2222223333210 1223333333333221110 10 0112477777
Q ss_pred HHhhcCCChhHHHHHHHHHHHHhhhcc-cc----ccc---hhhHhHHHHHHHhccCC---CCCCHHHHHHHHHHHHHHHh
Q 006201 137 LSNIHQLPPHTKQATLETLGYICEEVS-SD----AVE---QDHVNKILTAVVQGMNA---SESNNDVRLAATRALYNALG 205 (657)
Q Consensus 137 ~~~l~~~~~~~~~~~l~~l~~i~~~~~-~~----~l~---~~~~~~l~~~l~~~l~~---~~~~~~vr~~al~~l~~~~~ 205 (657)
+..+. ++..|..|+.||..++.... ++ .+. ...+..++.... .... ++.+.++++...+.+..+..
T Consensus 255 ~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~-~~~~~~~~e~d~e~~k~l~~ll~~lg~ 331 (1204)
T 3a6p_A 255 CLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQ-TADGGGLVEKHYVFLKRLCQVLCALGN 331 (1204)
T ss_dssp HHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHH-TCCCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhh-cCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 76665 46788999999999987541 11 110 011123333211 0010 13345666666666666553
Q ss_pred hchhhc------CChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHH----HHhhHHhHHHHHHHHHH---HHhcC
Q 006201 206 FAQANF------SNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTY----YEKLAPYIQDIFNITAK---AVRED 272 (657)
Q Consensus 206 ~~~~~~------~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~~~~~~~~l~~~~~~---~~~~~ 272 (657)
.+...+ ........+++.++.++++++..+...++..|..+++.. .+.+.+++..+++.+.. .++.+
T Consensus 332 ~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp 411 (1204)
T 3a6p_A 332 QLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFP 411 (1204)
T ss_dssp HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCS
T ss_pred HHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 322111 112233678999999888888899988999998877542 23456788888888733 22211
Q ss_pred Ch------------------------HHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHH
Q 006201 273 EE------------------------PVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLET 328 (657)
Q Consensus 273 ~~------------------------~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 328 (657)
++ ++|....+++..++...+ ...++.+.+.+...
T Consensus 412 ~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p----------------------~~~l~~v~~~l~~~ 469 (1204)
T 3a6p_A 412 SKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDP----------------------KTSFQMAGEWLKYQ 469 (1204)
T ss_dssp SCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCH----------------------HHHHHHHHHHHHHH
T ss_pred cccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCH----------------------HHHHHHHHHHHHHH
Confidence 10 011111111111111100 00111112222222
Q ss_pred hhhhcCcc----------------ccCCCcchHhhhHHHHHHHHHhhc---C--CC----chhchHHHHHhhhcCcchhh
Q 006201 329 LLKQEEDQ----------------DQDEGAWNIAMAGGTCLGLVARTV---G--DD----IVPLVMPFVEENITKQEWRQ 383 (657)
Q Consensus 329 l~~~~~d~----------------~~d~~~~~~r~~a~~~L~~l~~~~---~--~~----~~~~l~~~l~~~l~~~~~~~ 383 (657)
+...-+.. ......|....+....++.+...+ . +. +.+.+++.+... ...++..
T Consensus 470 l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~-~~~~p~l 548 (1204)
T 3a6p_A 470 LSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNF-DTKDPLI 548 (1204)
T ss_dssp HTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHC-CCSCHHH
T ss_pred HhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhC-CCCChHH
Confidence 22110000 000123544555556666665544 1 11 233444443221 2246789
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCC------------CcHHHHHHHHHHHHHHHhhhccCcCCCccC
Q 006201 384 REAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQD------------PNNHVKDTTAWTLGRMFEFLHGSTLETPII 451 (657)
Q Consensus 384 r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d------------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 451 (657)
|...+.+++.+..-.. .-..+++.++..++..+ .+ .+..||.+|+.++.+++..+++ .
T Consensus 549 ~~~~i~~l~~l~~~~~--~~p~~L~~vL~~ll~~l-~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~-------~ 618 (1204)
T 3a6p_A 549 LSCVLTNVSALFPFVT--YRPEFLPQVFSKLFSSV-TFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQ-------L 618 (1204)
T ss_dssp HHHHHHHHHHHGGGGG--TCGGGHHHHHHHHHHHH-HCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHH-------H
T ss_pred HHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHhh-ccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhH-------H
Confidence 9999999998776542 22357888888888887 55 3458999999999999998853 4
Q ss_pred CcccHHHHHHHHHHHccc-c---hHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhc
Q 006201 452 NQGNCQQIISVLLQSMKD-V---PNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTH 514 (657)
Q Consensus 452 ~~~~~~~il~~l~~~l~d-~---~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~ 514 (657)
..++++.+...+...+.. . ..-+..-..++..+...+.+ ......|+..+++.+.+.+.
T Consensus 619 L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~----~~~~~~~l~~ll~P~~~~w~ 681 (1204)
T 3a6p_A 619 VLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKN----YERQKVFLEELMAPVASIWL 681 (1204)
T ss_dssp HGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCC----HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHHHHHHHc
Confidence 567888888877775542 1 22233333444444433221 11223456666666665554
No 77
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.85 E-value=7.3e-07 Score=74.61 Aligned_cols=214 Identities=12% Similarity=0.191 Sum_probs=153.3
Q ss_pred HHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhh
Q 006201 218 DYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEE 297 (657)
Q Consensus 218 ~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~ 297 (657)
..++..++.++.++-|.++++++..+..+++.+++...|.+..++-.+- ++..-.........+++++...|+
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~---ksEaIpltqeIa~a~G~la~i~Pe---- 103 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLK---KSEAIPLTQEIAKAFGQMAKEKPE---- 103 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH---HCCSHHHHHHHHHHHHHHHHHCHH----
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh---hcccCchHHHHHHHHhHHHHhCHH----
Confidence 4688888999999999999999999999999999988888777765432 222222323334455666654332
Q ss_pred cCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhc
Q 006201 298 YGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENIT 377 (657)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~ 377 (657)
. +..++|.++....-. | -..|.....+|..++...| ..++.++.-+..+++
T Consensus 104 ---------------~----v~~vVp~lfanyrig--d-------~kikIn~~yaLeeIaranP-~l~~~v~rdi~smlt 154 (253)
T 2db0_A 104 ---------------L----VKSMIPVLFANYRIG--D-------EKTKINVSYALEEIAKANP-MLMASIVRDFMSMLS 154 (253)
T ss_dssp ---------------H----HHHHHHHHHHHSCCC--S-------HHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHTS
T ss_pred ---------------H----HHhhHHHHHHHHhcC--C-------ccceecHHHHHHHHHHhCh-HHHHHHHHHHHHHhc
Confidence 2 335678888755432 1 2667777888888888754 345555666667888
Q ss_pred CcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHH
Q 006201 378 KQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQ 457 (657)
Q Consensus 378 ~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~ 457 (657)
|++-..|.+|+..++++++.- .....|+ +|.+...| .|.+..||..|..+|+.++..-+ . +.
T Consensus 155 skd~~Dkl~aLnFi~alGen~-~~yv~Pf----LprL~aLL-~D~deiVRaSaVEtL~~lA~~np-----------k-lR 216 (253)
T 2db0_A 155 SKNREDKLTALNFIEAMGENS-FKYVNPF----LPRIINLL-HDGDEIVRASAVEALVHLATLND-----------K-LR 216 (253)
T ss_dssp CSSHHHHHHHHHHHHTCCTTT-HHHHGGG----HHHHHGGG-GCSSHHHHHHHHHHHHHHHTSCH-----------H-HH
T ss_pred CCChHHHHHHHHHHHHHhccC-ccccCcc----hHHHHHHH-cCcchhhhHHHHHHHHHHHHcCH-----------H-HH
Confidence 898889999999999998763 3444444 57777888 99999999999999999988532 2 66
Q ss_pred HHHHHHHHHccc-chHHHHHHHHHHHHHH
Q 006201 458 QIISVLLQSMKD-VPNVAEKACGALYFLA 485 (657)
Q Consensus 458 ~il~~l~~~l~d-~~~v~~~a~~al~~l~ 485 (657)
+++..-++.+.| +.-|....-.+|..+.
T Consensus 217 kii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 217 KVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 666677777877 5667766667777665
No 78
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.82 E-value=4.5e-07 Score=92.31 Aligned_cols=361 Identities=13% Similarity=0.116 Sum_probs=196.9
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCC----------CCHHHHHHHHHHH
Q 006201 131 ELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASE----------SNNDVRLAATRAL 200 (657)
Q Consensus 131 ~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~----------~~~~vr~~al~~l 200 (657)
+.++.+.+.+.+.+... ..+.|..+.... +... ...-...+|.|++.+...+ .+++++..|..+|
T Consensus 32 ~~~~~l~~~~~~~~~~~---~~~~ll~~~~~~-~~~~-~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al 106 (458)
T 3nmz_A 32 EMVYSLLSMLGTHDKDD---MSRTLLAMSSSQ-DSCI-SMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAAL 106 (458)
T ss_dssp -------------CCHH---HHHHHHHHHSST-THHH-HHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHH---HHHHHHHHHcCC-cHHH-HHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHH
Confidence 34455666666555542 444444444433 2101 1223456788888887422 3479999999999
Q ss_pred HHHHhhchhhcCChhhHHHHH----------HHHHhhccCCc--HH-----HHH-------HHHHHHHHHHHHHHHhhHH
Q 006201 201 YNALGFAQANFSNDMERDYIM----------RVVCEATLSPE--VK-----IRQ-------AAFECLVAISSTYYEKLAP 256 (657)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~il----------~~l~~~~~~~~--~~-----~~~-------~~~~~l~~l~~~~~~~~~~ 256 (657)
.+++.--++....... ..++ +.+.+.+...+ .+ ++. .++.+|..++.. ++. ..
T Consensus 107 ~ni~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~-R~ 183 (458)
T 3nmz_A 107 HNIIHSQPDDKRGRRE-IRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEH-RH 183 (458)
T ss_dssp HHHHHHSCSCHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHH-HH
T ss_pred HHHHccCcchhHHHHH-HHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHH-HH
Confidence 9988643322111000 0111 22223332221 11 333 677777777533 222 22
Q ss_pred hHH--HHHHHHHHHHh-----------cCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHH
Q 006201 257 YIQ--DIFNITAKAVR-----------EDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVP 323 (657)
Q Consensus 257 ~~~--~l~~~~~~~~~-----------~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 323 (657)
.+. ..++.+...+. +.++.++..|...+..++..... .+..+. .....+|
T Consensus 184 ~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~----------------~k~~i~-~~~GaIp 246 (458)
T 3nmz_A 184 AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA----------------NKATLC-SMKGCMR 246 (458)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHH----------------HHHHHH-HCHHHHH
T ss_pred HHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcc----------------cHHHHH-HcCCcHH
Confidence 221 34444444442 12346788888888888753210 111111 0234577
Q ss_pred HHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcC----CCch-hchHHHHHhh-hcCcchhhHHHHHHHHHHhhcC
Q 006201 324 LLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVG----DDIV-PLVMPFVEEN-ITKQEWRQREAATYAFGSILEG 397 (657)
Q Consensus 324 ~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~----~~~~-~~l~~~l~~~-l~~~~~~~r~aal~~l~~i~~~ 397 (657)
.++..+...+ -.++..|..+|..++.... ..+. .-.+|.+.+. +.+.+...++.++.+|+.++.+
T Consensus 247 ~LV~LL~s~~---------~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~ 317 (458)
T 3nmz_A 247 ALVAQLKSES---------EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 317 (458)
T ss_dssp HHHHGGGCSC---------HHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC---------HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccC
Confidence 7777775311 2567788888888865311 1111 1123344443 3455678899999999999874
Q ss_pred CCCCcchHHH--HHHHHHHHHHhcCCCcH----HHHHHHHHHHHHHHhhhccCcCCCccCCcccH--HHHHHHHHHHccc
Q 006201 398 PSPEKLVPLV--NIALNFMLTALMQDPNN----HVKDTTAWTLGRMFEFLHGSTLETPIINQGNC--QQIISVLLQSMKD 469 (657)
Q Consensus 398 ~~~~~~~~~~--~~i~~~l~~~l~~d~~~----~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~--~~il~~l~~~l~d 469 (657)
+. +.-.... ...++.++..+ .+++. .++..|+++|..++..+... + .....+ ...+|.|+..|.+
T Consensus 318 ~~-~nk~~I~~~~Gal~~Lv~LL-~~~~~~~~~~v~~~A~~aL~nLs~~~a~~----~-~~~~~i~~~G~i~~Lv~LL~~ 390 (458)
T 3nmz_A 318 CT-ENKADICAVDGALAFLVGTL-TYRSQTNTLAIIESGGGILRNVSSLIATN----E-DHRQILRENNCLQTLLQHLKS 390 (458)
T ss_dssp CH-HHHHHHHHSTTHHHHHHHHT-TCCCSSSTTHHHHHHHHHHHHHHHHHTTC----H-HHHHHHHHTTHHHHHHHHSSC
T ss_pred CH-HHHHHHHHhcCcHHHHHHHh-cCCCCcchHHHHHHHHHHHHHHHhcccCC----H-HHHHHHHHcccHHHHHHHHcC
Confidence 31 2112222 35788999998 66544 48999999999998742110 0 111111 3468899999986
Q ss_pred -chHHHHHHHHHHHHHHhhccCCCCCCCCCchhH-HHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccc
Q 006201 470 -VPNVAEKACGALYFLAQGFEDAISPSSPLTPFF-QEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDE 541 (657)
Q Consensus 470 -~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~-~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~ 541 (657)
+..++..|+++|.+++..-. ....... ...++.|..++...+ ..+++.+..+|..+....+.+
T Consensus 391 ~~~~v~~~A~~aL~nLa~~~~------~~~~~i~~~G~I~~Lv~LL~s~~---~~v~~~Aa~AL~nL~~~~p~k 455 (458)
T 3nmz_A 391 HSLTIVSNACGTLWNLSARNP------KDQEALWDMGAVSMLKNLIHSKH---KMIAMGSAAALRNLMANRPAK 455 (458)
T ss_dssp SCHHHHHHHHHHHHHHHSSCH------HHHHHHHHHTHHHHHHTTTTCSS---HHHHHHHHHHHHHHHTCCSCC
T ss_pred CChHHHHHHHHHHHHHHcCCH------HHHHHHHHCCCHHHHHHHHhCCC---HHHHHHHHHHHHHHHcCCHhh
Confidence 67899999999999984211 1111122 356888999887654 678889999999999877654
No 79
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.76 E-value=1.1e-07 Score=87.13 Aligned_cols=192 Identities=15% Similarity=0.133 Sum_probs=135.8
Q ss_pred HHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHH-HHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhh
Q 006201 219 YIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEE 297 (657)
Q Consensus 219 ~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~ 297 (657)
...+.+..++++++++++..++.+|..++...++.....+. ..++.++..+.+.++.++..++..+..++....+..
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-- 89 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI-- 89 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH--
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH--
Confidence 35566677788899999999999999998655544433333 678888888999999999999999888874221100
Q ss_pred cCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCC---c-hhchHHHHH
Q 006201 298 YGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDD---I-VPLVMPFVE 373 (657)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~---~-~~~l~~~l~ 373 (657)
..+.+ ...+|.++..+... +..+|..|..+|..++...+.. + -.-.++.+.
T Consensus 90 -------------~~i~~---~g~i~~L~~lL~~~---------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 144 (210)
T 4db6_A 90 -------------QAVID---AGALPALVQLLSSP---------NEQILQEALWALSNIASGGNEQIQAVIDAGALPALV 144 (210)
T ss_dssp -------------HHHHH---TTCHHHHHHHTTCS---------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred -------------HHHHH---CCCHHHHHHHHcCC---------cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHH
Confidence 01111 23567777766521 2478888999999988633211 1 123566666
Q ss_pred hhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 006201 374 ENITKQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFE 439 (657)
Q Consensus 374 ~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~ 439 (657)
+.+.+++..+|..|+.+|+.++... +....... ...++.++..+ .++++.+|..|+++|++++.
T Consensus 145 ~ll~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 145 QLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQ-SHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHCC
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCC-cHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHhc
Confidence 7777888999999999999999753 22222222 24688899999 99999999999999998864
No 80
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.75 E-value=3.2e-06 Score=70.78 Aligned_cols=214 Identities=11% Similarity=0.094 Sum_probs=147.4
Q ss_pred chHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchh
Q 006201 130 PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQA 209 (657)
Q Consensus 130 ~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~ 209 (657)
.+++..++..+.++-+.++.+|+.++..+.+.+ |+.. .+. +..++..++. +.....-....++|+.+...-
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~-~el~-epl----~~kL~vm~~k-sEaIpltqeIa~a~G~la~i~-- 101 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTR-EDLY-EPM----LKKLFSLLKK-SEAIPLTQEIAKAFGQMAKEK-- 101 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-GGGH-HHH----HHHHHHHHHH-CCSHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHh-HHHH-HHH----HHHHHHHHhh-cccCchHHHHHHHHhHHHHhC--
Confidence 588999999999999999999999999999988 6655 344 4444444443 455555556678888866532
Q ss_pred hcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhH
Q 006201 210 NFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCD 289 (657)
Q Consensus 210 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~ 289 (657)
+.....+++.++.-..-.++++|......|.+++..+|+.+... +.-+...+++.++.-+..++.|+..+++
T Consensus 102 ----Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v----~rdi~smltskd~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 102 ----PELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASI----VRDFMSMLSSKNREDKLTALNFIEAMGE 173 (253)
T ss_dssp ----HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHH----HHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred ----HHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHH----HHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 22335678888776666799999999999999999998776554 4444456678888889999999998887
Q ss_pred HHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchH
Q 006201 290 EEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVM 369 (657)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~ 369 (657)
.. +.|+.+++++++..+ - |++--+|.+|.++|..++...+. +-+.+.
T Consensus 174 n~-------------------~~yv~PfLprL~aLL----~---------D~deiVRaSaVEtL~~lA~~npk-lRkii~ 220 (253)
T 2db0_A 174 NS-------------------FKYVNPFLPRIINLL----H---------DGDEIVRASAVEALVHLATLNDK-LRKVVI 220 (253)
T ss_dssp TT-------------------HHHHGGGHHHHHGGG----G---------CSSHHHHHHHHHHHHHHHTSCHH-HHHHHH
T ss_pred cC-------------------ccccCcchHHHHHHH----c---------CcchhhhHHHHHHHHHHHHcCHH-HHHHHH
Confidence 43 356666666554443 1 11136899999999999986554 444444
Q ss_pred HHHHhhhcCcchhhHHHHHHHHHHh
Q 006201 370 PFVEENITKQEWRQREAATYAFGSI 394 (657)
Q Consensus 370 ~~l~~~l~~~~~~~r~aal~~l~~i 394 (657)
..+.+ +.|++..+.+...-+|+.+
T Consensus 221 ~kl~e-~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 221 KRLEE-LNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp HHHHH-CCCSCHHHHHHHHHHHHHH
T ss_pred HHHHH-hcCcHHHHHHHHHHHHHHH
Confidence 44443 4555544555555555544
No 81
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.70 E-value=1.7e-07 Score=89.85 Aligned_cols=249 Identities=8% Similarity=0.044 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHhc--CcccHHHHHHHHHhcC----------CCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChH
Q 006201 21 KQAEESLKQYQEQ--NLPGFLLSLAGELVND----------EKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSS 88 (657)
Q Consensus 21 ~~A~~~L~~~~~~--~~~~~~~~L~~~l~~~----------~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~ 88 (657)
+..-.+|.++... +++..+...+.+|.++ +.+.+.|..|+-.|.+++..... ...+
T Consensus 10 ~~~~~~~~~~~~~~~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dn------a~~~------ 77 (296)
T 1xqr_A 10 SSGLVPRGSHMRGQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDN------AADF------ 77 (296)
T ss_dssp ----------CCSCHHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHH------HHHH------
T ss_pred ccchHHHHHHHcCCCCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhh------HHHH------
Confidence 3445556555332 2355677778888874 22346788888888887764211 0111
Q ss_pred HHHHHHHHHHH-hcCCCChHHHHHHHHHHHHHHhhhcCCCCC----chHHHHHHHhhcC-CChhHHHHHHHHHHHHhhhc
Q 006201 89 VKAQIKSFILK-TLSSPAHDARSTASQVVAKVAGIELPHKQW----PELIGALLSNIHQ-LPPHTKQATLETLGYICEEV 162 (657)
Q Consensus 89 ~~~~i~~~ll~-~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~----~~l~~~l~~~l~~-~~~~~~~~~l~~l~~i~~~~ 162 (657)
.+....+.++. +|.++++.+|..|+.+|+.++... |..++ .+.+|.|++.+.+ ++..++..++.+|+.++...
T Consensus 78 ~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n-~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~ 156 (296)
T 1xqr_A 78 CQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNV-AAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQ 156 (296)
T ss_dssp HHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-HHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCC
Confidence 11123356788 899999999999999999999753 21111 3678889998885 47889999999999998865
Q ss_pred cccccchhh-HhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHH
Q 006201 163 SSDAVEQDH-VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241 (657)
Q Consensus 163 ~~~~l~~~~-~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~ 241 (657)
+... ... ....+|.+...+. +.+..++..|+.++.++...-++... ......+++.+..++..++.+++..++.
T Consensus 157 -~~~~-~~~~~~ggi~~L~~lL~--~~d~~v~~~A~~aLs~L~~~~~~~~~-~vv~~g~i~~Lv~LL~~~d~~v~~~al~ 231 (296)
T 1xqr_A 157 -EAGL-LQFLRLDGFSVLMRAMQ--QQVQKLKVKSAFLLQNLLVGHPEHKG-TLCSMGMVQQLVALVRTEHSPFHEHVLG 231 (296)
T ss_dssp -HHHH-HHHHHTTHHHHHHHHHH--SSCHHHHHHHHHHHHHHHHHCGGGHH-HHHHTTHHHHHHHHHTSCCSTHHHHHHH
T ss_pred -cHHH-HHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHhCChHHHH-HHHHcCCHHHHHHHHcCCChhHHHHHHH
Confidence 2211 111 1356888888888 67899999999999998754211100 0011236677788888889999999999
Q ss_pred HHHHHHHHHHHhhH------HhHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHH
Q 006201 242 CLVAISSTYYEKLA------PYIQDIFNITAKAVRED--EEPVALQAIEFWSSV 287 (657)
Q Consensus 242 ~l~~l~~~~~~~~~------~~~~~l~~~~~~~~~~~--~~~v~~~a~~~~~~l 287 (657)
+|..++...+.... ..+..+++.....++.. ..++...+..+|.++
T Consensus 232 aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~ 285 (296)
T 1xqr_A 232 ALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTC 285 (296)
T ss_dssp HHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 99999876443221 12344444444444422 234445555544443
No 82
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.66 E-value=1.3e-05 Score=86.94 Aligned_cols=267 Identities=15% Similarity=0.087 Sum_probs=169.9
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCC
Q 006201 106 HDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNA 185 (657)
Q Consensus 106 ~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~ 185 (657)
+.+|..++..||.+... ..-+++++.|.+.+.+++...+..+...|+.+.-.. .. ...+..++..+. .
T Consensus 451 ~~ir~gAaLGLGla~~G----S~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGT-gn---~~ai~~LL~~~~---e- 518 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMG----SANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGT-GK---PEAIHDMFTYSQ---E- 518 (963)
T ss_dssp HHHHHHHHHHHHHHSTT----CCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC-CC---HHHHHHHHHHHH---H-
T ss_pred HHHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhccc-CC---HHHHHHHHHHHh---c-
Confidence 68999999999886543 244688899999988888777888888888764433 11 233445554433 2
Q ss_pred CCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHH
Q 006201 186 SESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNIT 265 (657)
Q Consensus 186 ~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~ 265 (657)
+.+..+|+.+.-+|+-+.. ..+...+.++..+. .+.++-+|..++.+++--.-..+. ...++.++..
T Consensus 519 -~~~e~vrR~aalgLGll~~------g~~e~~~~li~~L~---~~~dp~vRygaa~alglAyaGTGn--~~aIq~LL~~- 585 (963)
T 4ady_A 519 -TQHGNITRGLAVGLALINY------GRQELADDLITKML---ASDESLLRYGGAFTIALAYAGTGN--NSAVKRLLHV- 585 (963)
T ss_dssp -CSCHHHHHHHHHHHHHHTT------TCGGGGHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTSCC--HHHHHHHHHH-
T ss_pred -cCcHHHHHHHHHHHHhhhC------CChHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHH-
Confidence 4567899888888886532 11122244555543 346788887777666531111110 1222334433
Q ss_pred HHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchH
Q 006201 266 AKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNI 345 (657)
Q Consensus 266 ~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~ 345 (657)
+..+.++.+|..|+..+..+.-.+ ++.++.++..+.. ..++.+
T Consensus 586 --~~~d~~d~VRraAViaLGlI~~g~---------------------------~e~v~rlv~~L~~--------~~d~~V 628 (963)
T 4ady_A 586 --AVSDSNDDVRRAAVIALGFVLLRD---------------------------YTTVPRIVQLLSK--------SHNAHV 628 (963)
T ss_dssp --HHHCSCHHHHHHHHHHHHHHTSSS---------------------------CSSHHHHTTTGGG--------CSCHHH
T ss_pred --hccCCcHHHHHHHHHHHHhhccCC---------------------------HHHHHHHHHHHHh--------cCCHHH
Confidence 345677889988876655543211 0112333333321 123789
Q ss_pred hhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCC--Cc
Q 006201 346 AMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQD--PN 423 (657)
Q Consensus 346 r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d--~~ 423 (657)
|..+..+|+.++..-| .+.++..|.....|++..+|.+|+.+||.|..+. .+...+.+..++..+.+.. .| .+
T Consensus 629 R~gAalALGli~aGn~---~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gt-nna~~~rva~~l~~L~~~~-~dk~~d 703 (963)
T 4ady_A 629 RCGTAFALGIACAGKG---LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQ-TEKLNPQVADINKNFLSVI-TNKHQE 703 (963)
T ss_dssp HHHHHHHHHHHTSSSC---CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTC-CTTTCTTHHHHHHHHHHHH-HCSSSC
T ss_pred HHHHHHHHHHhccCCC---cHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC-ccccchHHHHHHHHHHHHH-hccccc
Confidence 9999999988875444 3566677777888999999999999999999876 3554455666667677766 54 56
Q ss_pred HHHHHHHHHHHHHHHh
Q 006201 424 NHVKDTTAWTLGRMFE 439 (657)
Q Consensus 424 ~~vr~~a~~~l~~l~~ 439 (657)
+..|..+..+.|-+.-
T Consensus 704 ~~~~fga~iAqGll~a 719 (963)
T 4ady_A 704 GLAKFGACVAQGIMNA 719 (963)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7889888888886643
No 83
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.56 E-value=7.1e-05 Score=81.33 Aligned_cols=301 Identities=12% Similarity=0.042 Sum_probs=173.8
Q ss_pred CCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCC--------hhHHHHHHHHHHHHhhhccccccchhhHhH
Q 006201 103 SPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLP--------PHTKQATLETLGYICEEVSSDAVEQDHVNK 174 (657)
Q Consensus 103 ~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~--------~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~ 174 (657)
++++.+|..++.++|.+.... ..+.+..|...+.+++ +.+|.+|...|+.+.-.. . . .+
T Consensus 406 s~~~~ik~GAllaLGli~ag~-----~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS-~----~---ee 472 (963)
T 4ady_A 406 ASSRFIKGGSLYGLGLIYAGF-----GRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGS-A----N---IE 472 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTT-----THHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTC-C----C---HH
T ss_pred CCcHHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCC-C----C---HH
Confidence 445788888888888876543 1245666666665544 567778877887753322 1 1 22
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhh
Q 006201 175 ILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKL 254 (657)
Q Consensus 175 l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 254 (657)
+++.|.+.+. +.+..++..|.-+++-+..- ..+......+++.+. .+.+.++|..+...|+-+.-..++.+
T Consensus 473 v~e~L~~~L~--dd~~~~~~~AalALGli~vG----Tgn~~ai~~LL~~~~---e~~~e~vrR~aalgLGll~~g~~e~~ 543 (963)
T 4ady_A 473 VYEALKEVLY--NDSATSGEAAALGMGLCMLG----TGKPEAIHDMFTYSQ---ETQHGNITRGLAVGLALINYGRQELA 543 (963)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHHHHHHTT----CCCHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCGGGG
T ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHhhhhcc----cCCHHHHHHHHHHHh---ccCcHHHHHHHHHHHHhhhCCChHHH
Confidence 3444455555 44556666666666654221 011111123333322 34567888888888876643333222
Q ss_pred HHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcC
Q 006201 255 APYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEE 334 (657)
Q Consensus 255 ~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~ 334 (657)
+.++..+ ..+.++.+|..++..+..-.. +.|+ ...++.++..+..
T Consensus 544 ----~~li~~L---~~~~dp~vRygaa~alglAya------------GTGn---------~~aIq~LL~~~~~------- 588 (963)
T 4ady_A 544 ----DDLITKM---LASDESLLRYGGAFTIALAYA------------GTGN---------NSAVKRLLHVAVS------- 588 (963)
T ss_dssp ----HHHHHHH---HHCSCHHHHHHHHHHHHHHTT------------TSCC---------HHHHHHHHHHHHH-------
T ss_pred ----HHHHHHH---HhCCCHHHHHHHHHHHHHHhc------------CCCC---------HHHHHHHHHHhcc-------
Confidence 2233322 224667777766643322111 0111 1122333433331
Q ss_pred ccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHH
Q 006201 335 DQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFM 414 (657)
Q Consensus 335 d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l 414 (657)
| .+..+|.+|..+|+.+...-+ +..+.++. ....+.+|.+|.++.+++|.+..+.. . ..++..|
T Consensus 589 d-----~~d~VRraAViaLGlI~~g~~-e~v~rlv~---~L~~~~d~~VR~gAalALGli~aGn~-~------~~aid~L 652 (963)
T 4ady_A 589 D-----SNDDVRRAAVIALGFVLLRDY-TTVPRIVQ---LLSKSHNAHVRCGTAFALGIACAGKG-L------QSAIDVL 652 (963)
T ss_dssp C-----SCHHHHHHHHHHHHHHTSSSC-SSHHHHTT---TGGGCSCHHHHHHHHHHHHHHTSSSC-C------HHHHHHH
T ss_pred C-----CcHHHHHHHHHHHHhhccCCH-HHHHHHHH---HHHhcCCHHHHHHHHHHHHHhccCCC-c------HHHHHHH
Confidence 1 112578888777776654322 33333332 23346789999999999999987642 1 4456666
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc---chHHHHHHHHHHHHH
Q 006201 415 LTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD---VPNVAEKACGALYFL 484 (657)
Q Consensus 415 ~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d---~~~v~~~a~~al~~l 484 (657)
.+.. .|++..||.+|+.++|.+..-..+ ...+.+..++..+.+...| ++..+-.+..|.+-+
T Consensus 653 ~~L~-~D~d~~Vrq~Ai~ALG~Ig~gtnn-------a~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 653 DPLT-KDPVDFVRQAAMIALSMILIQQTE-------KLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp HHHH-TCSSHHHHHHHHHHHHHHSTTCCT-------TTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred HHHc-cCCCHHHHHHHHHHHHHHhcCCcc-------ccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 6777 999999999999999988775431 2235678888888887765 355677777776654
No 84
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.56 E-value=1.2e-06 Score=83.82 Aligned_cols=151 Identities=17% Similarity=0.114 Sum_probs=110.4
Q ss_pred HHHHh-hhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHH-HHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhccCcC
Q 006201 370 PFVEE-NITKQEWRQREAATYAFGSILEGPSPEKLVPLVN-IALNFMLTALMQ-DPNNHVKDTTAWTLGRMFEFLHGSTL 446 (657)
Q Consensus 370 ~~l~~-~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~-~i~~~l~~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~~~ 446 (657)
|.+.. .+.+++..+|..|+++|+.++.+. +..-...+. ..+|.++..+ + ++++.+|..|+|+|+.++...+.
T Consensus 84 ~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n-~~~~~~vv~~g~l~~Ll~LL-~~~~~~~v~~~A~~ALsnl~~~~~~--- 158 (296)
T 1xqr_A 84 HLLVGRYLEAGAAGLRWRAAQLIGTCSQNV-AAIQEQVLGLGALRKLLRLL-DRDACDTVRVKALFAISCLVREQEA--- 158 (296)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHH-HHCSCHHHHHHHHHHHHHHHTTCHH---
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-HHHHHHHHHCCCHHHHHHHH-ccCCCHHHHHHHHHHHHHHHcCCcH---
Confidence 33444 778888999999999999999763 221112222 4788999998 6 56899999999999999875431
Q ss_pred CCccCCcccH-HHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhH--HHHHHHHHHhhccccchhhh
Q 006201 447 ETPIINQGNC-QQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFF--QEIVQALLTVTHREDAGESR 522 (657)
Q Consensus 447 ~~~~~~~~~~-~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~--~~i~~~L~~~l~~~~~~~~~ 522 (657)
....+. ...++.|+..|++ ++.++..|+++|.+++..- .....++ ..+++.|+.++...+ ..
T Consensus 159 ----~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~-------~~~~~~vv~~g~i~~Lv~LL~~~d---~~ 224 (296)
T 1xqr_A 159 ----GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH-------PEHKGTLCSMGMVQQLVALVRTEH---SP 224 (296)
T ss_dssp ----HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-------GGGHHHHHHTTHHHHHHHHHTSCC---ST
T ss_pred ----HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-------hHHHHHHHHcCCHHHHHHHHcCCC---hh
Confidence 111222 3578899988886 7899999999999998752 1122222 267888899988764 68
Q ss_pred HHHHHHHHHHHHHHhcc
Q 006201 523 LRTAAYETLNEVVRCST 539 (657)
Q Consensus 523 ~~~~~~~al~~l~~~~~ 539 (657)
+++.++.+|+.++...+
T Consensus 225 v~~~al~aL~~l~~~~~ 241 (296)
T 1xqr_A 225 FHEHVLGALCSLVTDFP 241 (296)
T ss_dssp HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCCh
Confidence 89999999999998743
No 85
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.55 E-value=2.9e-06 Score=78.39 Aligned_cols=180 Identities=16% Similarity=0.197 Sum_probs=129.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCc
Q 006201 230 SPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIP 309 (657)
Q Consensus 230 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 309 (657)
+.+++.+.++++.|...++..++.+...+.-++.-+.-.+.+.+..+...+++++..+...-.+. .|
T Consensus 57 s~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~--~y----------- 123 (266)
T 2of3_A 57 HKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDT--ET----------- 123 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHT--TC-----------
T ss_pred CCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc--cc-----------
Confidence 35788888999999988877776655555555654433445778889899999888876643210 01
Q ss_pred hhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHH
Q 006201 310 CFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATY 389 (657)
Q Consensus 310 ~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~ 389 (657)
.+...-...++|.++..+.+.. -.+|..+..++..+...++ ...+++.+.+.+.+.+|+.|+.++.
T Consensus 124 --~~~~~ea~~~lP~LveKlGd~k---------~~vR~~~r~il~~l~~v~~---~~~v~~~l~~g~ksKN~R~R~e~l~ 189 (266)
T 2of3_A 124 --PMSQEEVSAFVPYLLLKTGEAK---------DNMRTSVRDIVNVLSDVVG---PLKMTPMLLDALKSKNARQRSECLL 189 (266)
T ss_dssp --CCCHHHHHHHHHHHHHGGGCSS---------HHHHHHHHHHHHHHHHHHC---HHHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred --cchHHHHHHHHHHHHHHhCCCh---------HHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHccCCHHHHHHHHH
Confidence 1122223457899988775321 2789999999988887654 2346677777889999999999999
Q ss_pred HHHHhhcCCCCCcchHHHHHHH---HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhc
Q 006201 390 AFGSILEGPSPEKLVPLVNIAL---NFMLTALMQDPNNHVKDTTAWTLGRMFEFLH 442 (657)
Q Consensus 390 ~l~~i~~~~~~~~~~~~~~~i~---~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~ 442 (657)
.++.+.+..+.. + ...+ +.+.+.+ .|++..||.+|+.|+..+....+
T Consensus 190 ~l~~li~~~G~~---~--~~~l~~~~~ia~ll-~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 190 VIEYYITNAGIS---P--LKSLSVEKTVAPFV-GDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp HHHHHHHHHCSG---G--GGGGCHHHHHGGGG-GCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCC---c--cccccchHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhh
Confidence 999988754322 1 2345 8888889 99999999999999998888765
No 86
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.55 E-value=2e-06 Score=82.50 Aligned_cols=182 Identities=14% Similarity=0.226 Sum_probs=134.5
Q ss_pred CcchHhhhHHHHHHHHHhhcCC-----C---chhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCc-----chHHH
Q 006201 341 GAWNIAMAGGTCLGLVARTVGD-----D---IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEK-----LVPLV 407 (657)
Q Consensus 341 ~~~~~r~~a~~~L~~l~~~~~~-----~---~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~-----~~~~~ 407 (657)
..|..|..|.+.|..+....+. . .+..+.+.+...+.|.+..+...++.++..++....... ...++
T Consensus 21 k~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~ 100 (278)
T 4ffb_C 21 KLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLI 100 (278)
T ss_dssp SSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHH
Confidence 4599999888888777654321 1 133456677788889999999999999999987653221 23456
Q ss_pred HHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHH
Q 006201 408 NIALNFMLTA-LMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLA 485 (657)
Q Consensus 408 ~~i~~~l~~~-l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~ 485 (657)
..++|.++.. + .|..+.+|..+..++-.+++... ....+++.+..++.. +|+++..++..|..++
T Consensus 101 ~~~l~~lveK~l-~~~k~~~~~~a~~~l~~~~~~~~------------~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l 167 (278)
T 4ffb_C 101 STWTPLLVEKGL-TSSRATTKTQSMSCILSLCGLDT------------SITQSVELVIPFFEKKLPKLIAAAANCVYELM 167 (278)
T ss_dssp HHHHHHHHHHTS-SCCCHHHHHHHHHHHHHHHHTSS------------SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCccHHHHHHHHHHHHHHHHhcC------------cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 6778887764 8 89999999999998877776532 225566777788876 8999999999999999
Q ss_pred hhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccc
Q 006201 486 QGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDE 541 (657)
Q Consensus 486 ~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~ 541 (657)
..++.. .....+.++.+++.+..++++.+ ..+|..+..++..+-...|+.
T Consensus 168 ~~fg~~---~~~~k~~l~~i~~~l~k~l~d~~---~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 168 AAFGLT---NVNVQTFLPELLKHVPQLAGHGD---RNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp HHHTTT---TCCHHHHHHHHGGGHHHHHTCSS---HHHHHHHHHHHHHHHTC----
T ss_pred HHhCCC---cCCchhHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHhCcc
Confidence 887531 22345677888888888998775 799999999999999999864
No 87
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.51 E-value=5e-06 Score=81.93 Aligned_cols=240 Identities=14% Similarity=0.136 Sum_probs=161.9
Q ss_pred ccHHHHHHHHHhc---------CCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHHHHHHhcCCCCh
Q 006201 36 PGFLLSLAGELVN---------DEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAH 106 (657)
Q Consensus 36 ~~~~~~L~~~l~~---------~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~ 106 (657)
.+.+..|+.++.. ...++.+|..|+..|.|+........ ..+ .......+.|++.|.++++
T Consensus 72 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k--------~~i--~~~~GaIp~LV~LL~s~~~ 141 (354)
T 3nmw_A 72 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANK--------ATL--CSMKGCMRALVAQLKSESE 141 (354)
T ss_dssp TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHH--------HHH--HHCHHHHHHHHHGGGCSCH
T ss_pred cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHH--------HHH--HHcCCcHHHHHHHHCCCCH
Confidence 4677788888742 11346789999999999765422100 000 0012345678889999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCC----CCchHHHHHHHh-hcCCChhHHHHHHHHHHHHhhhccccccchhh--HhHHHHHH
Q 006201 107 DARSTASQVVAKVAGIELPHK----QWPELIGALLSN-IHQLPPHTKQATLETLGYICEEVSSDAVEQDH--VNKILTAV 179 (657)
Q Consensus 107 ~vr~~aa~~l~~i~~~~~~~~----~~~~l~~~l~~~-l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~--~~~l~~~l 179 (657)
.++..++.+|..++...-+.+ .-...+|.|++. +.+.+...++.++.+|..++...+... ... ....+|.+
T Consensus 142 ~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk--~~i~~~~Gai~~L 219 (354)
T 3nmw_A 142 DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK--ADICAVDGALAFL 219 (354)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH--HHHHHSTTHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh--HHHHHhcCcHHHH
Confidence 999999999999986411100 113568888886 466788899999999998876331110 111 24578888
Q ss_pred HhccCCCCCC--HHHHHHHHHHHHHHHhhchhhcCChhhH-----HHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHH
Q 006201 180 VQGMNASESN--NDVRLAATRALYNALGFAQANFSNDMER-----DYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYE 252 (657)
Q Consensus 180 ~~~l~~~~~~--~~vr~~al~~l~~~~~~~~~~~~~~~~~-----~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 252 (657)
.+.+.+.+.+ .+++..|+.+|.++..++.. .+..+ ...++.+..++.+++.++++.++.+|..++...++
T Consensus 220 v~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~---~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~ 296 (354)
T 3nmw_A 220 VGTLTYRSQTNTLAIIESGGGILRNVSSLIAT---NEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK 296 (354)
T ss_dssp HHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHhccCCCcccHHHHHHHHHHHHHHHhhccC---CHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHH
Confidence 8888742222 26888899999887653210 11111 12567778888888999999999999999854444
Q ss_pred hhHHhHH-HHHHHHHHHHhcCChHHHHHHHHHHHHHhHH
Q 006201 253 KLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDE 290 (657)
Q Consensus 253 ~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~ 290 (657)
....... ..++.+...+.+.++.++..|...+..++..
T Consensus 297 ~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 297 DQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 4333333 5788888888888999999999888888864
No 88
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.38 E-value=3.7e-06 Score=80.55 Aligned_cols=195 Identities=12% Similarity=0.151 Sum_probs=128.8
Q ss_pred HHhhhcCcchhhHHHHHHHHHHhhcCCCCCc----chHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCC
Q 006201 372 VEENITKQEWRQREAATYAFGSILEGPSPEK----LVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLE 447 (657)
Q Consensus 372 l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~----~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 447 (657)
+.+.+.+.+|+.|..|+..+..+........ ....+....+.+.+.+ .|.|..|...++.++..++..+.....
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l-~DsN~~v~~~al~~l~~~~~~~~~~~~- 91 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYI-TDSNVVAQEQAIVALNSLIDAFASSSL- 91 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHT-TCSSHHHHHHHHHHHHHHHTTCC---C-
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHhhhhhc-
Confidence 4578899999999999999988776532111 1111233445666788 999999999999999999886541100
Q ss_pred CccCCcccHHHHHHHHHHH-ccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHH
Q 006201 448 TPIINQGNCQQIISVLLQS-MKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRT 525 (657)
Q Consensus 448 ~~~~~~~~~~~il~~l~~~-l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~ 525 (657)
.......+...++|.++.- +.+ .+.++..|..++..+++... ....+++.+...+...+ ..++.
T Consensus 92 ~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-----------~~~~~~e~l~~~l~~Kn---pkv~~ 157 (278)
T 4ffb_C 92 KNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-----------SITQSVELVIPFFEKKL---PKLIA 157 (278)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-----------SSHHHHHHHGGGGGCSC---HHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-----------cHHHHHHHHHHHHhccC---HHHHH
Confidence 0001224567788888864 776 57899999999988887531 22344566666676553 68888
Q ss_pred HHHHHHHHHHHhcccc---cHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 006201 526 AAYETLNEVVRCSTDE---TAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSS 595 (657)
Q Consensus 526 ~~~~al~~l~~~~~~~---~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 595 (657)
.++..|..++...|.. ..+.+..+++.+...++. .+. .+|..+.+++..+.+.+|..
T Consensus 158 ~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d---------~~~----~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 158 AAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGH---------GDR----NVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp HHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTC---------SSH----HHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhC---------CcH----HHHHHHHHHHHHHHHHhCcc
Confidence 9999999999987753 233455555555444432 122 68999999999999999965
No 89
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.37 E-value=8.8e-06 Score=79.14 Aligned_cols=306 Identities=12% Similarity=0.122 Sum_probs=164.1
Q ss_pred HhcCCCC---hHHHHHHHHHHHHHHhhh-cCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhH
Q 006201 99 KTLSSPA---HDARSTASQVVAKVAGIE-LPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNK 174 (657)
Q Consensus 99 ~~l~~~~---~~vr~~aa~~l~~i~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~ 174 (657)
..+.++. ...|..+..+|..+...+ +|......+++.+..+++++|...|+-+...+..+.+.- .+.+ -
T Consensus 32 r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e~i------L 104 (355)
T 3tjz_B 32 RVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-EDVI------I 104 (355)
T ss_dssp GGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SCGG------G
T ss_pred HHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HHHH------H
Confidence 4666653 344556677766665542 221234678889999999999999988888777765542 2211 3
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhh
Q 006201 175 ILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKL 254 (657)
Q Consensus 175 l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 254 (657)
++..+.+-++ ++++-+|-.|+++++++.. . .....+.+.+.+.+.+.++.||+.++-+...+....|+.+
T Consensus 105 v~Nsl~kDl~--~~N~~iR~lALRtL~~I~~-------~-~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v 174 (355)
T 3tjz_B 105 VTSSLTKDMT--GKEDSYRGPAVRALCQITD-------S-TMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV 174 (355)
T ss_dssp GHHHHHHHHH--SSCHHHHHHHHHHHHHHCC-------T-TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHhhcC--CCcHhHHHHHHHHHhcCCC-------H-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH
Confidence 4566777777 7889999999999999643 1 1125677777888899999999999999999988888766
Q ss_pred HHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcC
Q 006201 255 APYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEE 334 (657)
Q Consensus 255 ~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~ 334 (657)
.. +++.+...+.+.++.+...|+.++..+.+.. +..+.++++.+.. ..
T Consensus 175 ~~----~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d-----------------------~~a~~kLv~~l~~----~~- 222 (355)
T 3tjz_B 175 KR----WVNEAQEAASSDNIMVQYHALGLLYHVRKND-----------------------RLAVSKMISKFTR----HG- 222 (355)
T ss_dssp HT----THHHHHHHTTCSSHHHHHHHHHHHHHHHTTC-----------------------HHHHHHHHHHHHS----SC-
T ss_pred HH----HHHHHHHHhcCCCccHHHHHHHHHHHHHhhc-----------------------hHHHHHHHHHHhc----CC-
Confidence 54 4444445667788888887887766665421 1122233333211 00
Q ss_pred ccccCCCcchHhhhHHHHHHHHHhhcCC---CchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 006201 335 DQDQDEGAWNIAMAGGTCLGLVARTVGD---DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIAL 411 (657)
Q Consensus 335 d~~~d~~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~ 411 (657)
--+.|.. ...+..+....++ ..-..+++++...+++.+..+.+.|+.++-.+.... ... +...+
T Consensus 223 ----l~~~~~q----~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~-~~~----~~~a~ 289 (355)
T 3tjz_B 223 ----LKSPFAY----CMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCS-AKE----LAPAV 289 (355)
T ss_dssp ----CSCHHHH----HHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC----------------CC
T ss_pred ----CcChHHH----HHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCC-HHH----HHHHH
Confidence 0012321 1222222222221 234567778888888888889999988887775521 111 22334
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHH
Q 006201 412 NFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKAC 478 (657)
Q Consensus 412 ~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~ 478 (657)
+.+...+ .++++.+|+.|+..+..+....+ ..+...-..+.+.+.| |..++..|.
T Consensus 290 ~~L~~fL-ss~d~niryvaLr~L~~l~~~~P-----------~~v~~~n~~ie~li~d~n~sI~t~Ai 345 (355)
T 3tjz_B 290 SVLQLFC-SSPKAALRYAAVRTLNKVAMKHP-----------SAVTACNLDLENLVTDANRSIATLAI 345 (355)
T ss_dssp CTHHHHH-HSSSSSSHHHHHHCC---------------------------------------------
T ss_pred HHHHHHH-cCCCchHHHHHHHHHHHHHHHCc-----------HHHHHHHHHHHHHccCCcHhHHHHHH
Confidence 4555567 77888999999999988888654 2233333455555665 444444443
No 90
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.32 E-value=1.1e-05 Score=74.65 Aligned_cols=198 Identities=10% Similarity=0.096 Sum_probs=138.1
Q ss_pred HHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCc
Q 006201 370 PFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETP 449 (657)
Q Consensus 370 ~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 449 (657)
+-+...+.+.+|+.|.+|+-.|....+.. ++.+...++-+++.+.-.+ .|.|+.|-..++.++..+...+.+. .
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~-~~~~~~~lDll~kw~~lr~-~d~N~~v~~~~L~~L~~l~~~l~~~----~ 122 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTS-PRSLLSNSDLLLKWCTLRF-FETNPAALIKVLELCKVIVELIRDT----E 122 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHC-HHHHHHTHHHHHHHHHHHT-TSCCHHHHHHHHHHHHHHHHHHHHT----T
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhC-hHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHhc----c
Confidence 44456667889999999998888766543 3344344444556555567 7999999999999999988776531 1
Q ss_pred cCCccc-HHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHH
Q 006201 450 IINQGN-CQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAA 527 (657)
Q Consensus 450 ~~~~~~-~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~ 527 (657)
+...++ ...++|.|+.-++| ...||..+-..+..++..+. ...+++.++..+.+. +.+.|.+.
T Consensus 123 y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~------------~~~v~~~l~~g~ksK---N~R~R~e~ 187 (266)
T 2of3_A 123 TPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG------------PLKMTPMLLDALKSK---NARQRSEC 187 (266)
T ss_dssp CCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC------------HHHHHHHHHHGGGCS---CHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC------------HHHHHHHHHHHHccC---CHHHHHHH
Confidence 122333 57899999999998 57899999888888776421 224566677777654 37899999
Q ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHH
Q 006201 528 YETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYAD 607 (657)
Q Consensus 528 ~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 607 (657)
+..++.++...|-....++. +.|.+.+.++ +-| ..+|..++.|+..+.+..|.. +..++.
T Consensus 188 l~~l~~li~~~G~~~~~~l~-~~~~ia~ll~---------D~d----~~VR~aAl~~lve~y~~~Gd~------v~k~lg 247 (266)
T 2of3_A 188 LLVIEYYITNAGISPLKSLS-VEKTVAPFVG---------DKD----VNVRNAAINVLVACFKFEGDQ------MWKAAG 247 (266)
T ss_dssp HHHHHHHHHHHCSGGGGGGC-HHHHHGGGGG---------CSS----HHHHHHHHHHHHHHHHHHTTH------HHHHHC
T ss_pred HHHHHHHHHhcCCCcccccc-chHHHHHHHc---------CCC----HHHHHHHHHHHHHHHHHhhHH------HHHHHh
Confidence 99999999999865222210 0044443332 112 268999999999999999988 766654
Q ss_pred H
Q 006201 608 Q 608 (657)
Q Consensus 608 ~ 608 (657)
.
T Consensus 248 ~ 248 (266)
T 2of3_A 248 R 248 (266)
T ss_dssp C
T ss_pred c
Confidence 3
No 91
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.31 E-value=4.1e-05 Score=75.40 Aligned_cols=228 Identities=13% Similarity=0.036 Sum_probs=146.4
Q ss_pred CCHHHHHHHHHHHHHHHhhchhhcCChhh--HHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHH-HHHhhHHhHH--HHH
Q 006201 188 SNNDVRLAATRALYNALGFAQANFSNDME--RDYIMRVVCEATLSPEVKIRQAAFECLVAISST-YYEKLAPYIQ--DIF 262 (657)
Q Consensus 188 ~~~~vr~~al~~l~~~~~~~~~~~~~~~~--~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~--~l~ 262 (657)
.++.++..|..+|.++...-... .... ....++.|..++..++++++..++.+|..++.. ..+ .+..+. ..+
T Consensus 96 ~~~~~q~~Aa~aL~nLa~~~~~~--k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~-~k~~i~~~G~I 172 (354)
T 3nmw_A 96 YSITLRRYAGMALTNLTFGDVAN--KATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVN-SKKTLREVGSV 172 (354)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHH--HHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHH-HHHHHHHTTHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHH--HHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHH-HHHHHHHCCCH
Confidence 34678999999999976421111 0001 123578888888889999999999999999763 222 122221 456
Q ss_pred HHHHHH-HhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCC
Q 006201 263 NITAKA-VREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEG 341 (657)
Q Consensus 263 ~~~~~~-~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~ 341 (657)
+.++.. ..+.+++++..+...+..++....+. ...+.. ....+|.+.+.+....+ ..
T Consensus 173 p~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n---------------k~~i~~--~~Gai~~Lv~lL~~~~~-----~~ 230 (354)
T 3nmw_A 173 KALMECALEVKKESTLKSVLSALWNLSAHCTEN---------------KADICA--VDGALAFLVGTLTYRSQ-----TN 230 (354)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH---------------HHHHHH--STTHHHHHHHHTTCCCS-----SS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh---------------hHHHHH--hcCcHHHHHHHhccCCC-----cc
Confidence 666665 45567788888887777776411000 001110 13467777777754221 11
Q ss_pred cchHhhhHHHHHHHHHhh---cCC---Cch-hchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHH-HHHHHH
Q 006201 342 AWNIAMAGGTCLGLVART---VGD---DIV-PLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNF 413 (657)
Q Consensus 342 ~~~~r~~a~~~L~~l~~~---~~~---~~~-~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~-~~i~~~ 413 (657)
...++..|..+|..++.. .++ .+. .-.++.+.+.+.+.+...++.|+.+|+.++.+. .+...... ...+|.
T Consensus 231 ~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~i~~~G~i~~ 309 (354)
T 3nmw_A 231 TLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN-PKDQEALWDMGAVSM 309 (354)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC-HHHHHHHHHTTHHHH
T ss_pred cHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHH
Confidence 135777888899988863 111 111 124556666777788889999999999998653 23222222 246899
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhhc
Q 006201 414 MLTALMQDPNNHVKDTTAWTLGRMFEFLH 442 (657)
Q Consensus 414 l~~~l~~d~~~~vr~~a~~~l~~l~~~~~ 442 (657)
++..+ .+.++.+|..|+++|..++..-+
T Consensus 310 Lv~LL-~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 310 LKNLI-HSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHTTT-TCSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHH-hCCCHHHHHHHHHHHHHHHcCCH
Confidence 99999 99999999999999999998743
No 92
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.27 E-value=0.00016 Score=63.68 Aligned_cols=219 Identities=13% Similarity=0.138 Sum_probs=150.1
Q ss_pred HHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhH-HhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhh
Q 006201 218 DYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLA-PYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILE 296 (657)
Q Consensus 218 ~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~ 296 (657)
+..+..+..++.+.|+.++..++..+..+.+..++... ..+..+++.++....+.++.+...|++++.++.+..+
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vp---- 107 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVP---- 107 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCC----
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCC----
Confidence 34777888888899999999999999999988654444 4567888888888899999999999999999887431
Q ss_pred hcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhh
Q 006201 297 EYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENI 376 (657)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l 376 (657)
.....+.++...+...++... --.+..|.+.++.+ -.....+.+..++...+
T Consensus 108 ----------------L~~~~y~Kl~~aL~dlik~~~---------~il~~eaae~Lgkl---kv~~~~~~V~~~l~sLl 159 (265)
T 3b2a_A 108 ----------------MGSKTFLKAAKTLVSLLESPD---------DMMRIETIDVLSKL---QPLEDSKLVRTYINELV 159 (265)
T ss_dssp ----------------BCHHHHHHHHHHHHHHTTSCC---------HHHHHHHHHHHHHC---CBSCCCHHHHHHHHHHH
T ss_pred ----------------CCHHHHHHHHHHHHHHhcCCC---------chHHHHHHHHhCcC---CcccchHHHHHHHHHHH
Confidence 112223345555555444211 13445666766666 33456788899999999
Q ss_pred cCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccH
Q 006201 377 TKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNC 456 (657)
Q Consensus 377 ~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 456 (657)
.+.+.+++.+|+.++-.++........ +..++.-+-..+ +++++.++..|+.++..+...- .....+
T Consensus 160 ~Skd~~vK~agl~~L~eia~~S~D~~i---~~~I~~eI~elL-~~eD~~l~e~aLd~Le~ils~p---------i~~~~~ 226 (265)
T 3b2a_A 160 VSPDLYTKVAGFCLFLNMLNSSADSGH---LTLILDEIPSLL-QNDNEFIVELALDVLEKALSFP---------LLENVK 226 (265)
T ss_dssp TCSSHHHHHHHHHHHHHHGGGCSSCCC---GGGTTTTHHHHH-TCSCHHHHHHHHHHHHHHTTSC---------CCSCCH
T ss_pred hCCChhHHHHHHHHHHHhhcccCCHHH---HHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCc---------ccHhHH
Confidence 999999999999999999875321111 233344444556 8889999999999998887752 233444
Q ss_pred HHHHHHHH--HHcc---cchHHHHHHHHHH
Q 006201 457 QQIISVLL--QSMK---DVPNVAEKACGAL 481 (657)
Q Consensus 457 ~~il~~l~--~~l~---d~~~v~~~a~~al 481 (657)
+.+...+. ..+- ..|.+|..|-...
T Consensus 227 ~~~~~~~~~v~~l~~~~~~~~~~~ka~~v~ 256 (265)
T 3b2a_A 227 IELLKISRIVDGLVYREGAPIIRLKAKKVS 256 (265)
T ss_dssp HHHHHHHHHHHHGGGCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Confidence 44433332 2232 2577777765443
No 93
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.24 E-value=1.7e-06 Score=84.12 Aligned_cols=247 Identities=16% Similarity=0.088 Sum_probs=131.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhcCcccHH---HHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhh
Q 006201 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFL---LSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (657)
Q Consensus 5 l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~---~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (657)
+..++..+.++|...|+-..-.+..+.+. +++.+ ..+.+-+. +.++-+|-.|...|.+...
T Consensus 70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~iLv~Nsl~kDl~--~~N~~iR~lALRtL~~I~~------------- 133 (355)
T 3tjz_B 70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVIIVTSSLTKDMT--GKEDSYRGPAVRALCQITD------------- 133 (355)
T ss_dssp HHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGGGGHHHHHHHHH--SSCHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhcC--CCcHhHHHHHHHHHhcCCC-------------
Confidence 45567788899999999999999998776 33332 22333344 3578999999999998654
Q ss_pred cccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhh
Q 006201 82 WLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEE 161 (657)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~ 161 (657)
++..+.+-+.+-+++.+.++.||+.|+.+...+.... |+ .-..+++.+.+.+.+.++.+...|+.++..+.+.
T Consensus 134 -----~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~-pe-~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~ 206 (355)
T 3tjz_B 134 -----STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCS-FD-VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN 206 (355)
T ss_dssp -----TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC-HH-HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT
T ss_pred -----HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC-HH-HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh
Confidence 3445567777888999999999999999988777553 31 2234566777788888988888888888887652
Q ss_pred cc-----------cccc----c----------------hhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhh
Q 006201 162 VS-----------SDAV----E----------------QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQAN 210 (657)
Q Consensus 162 ~~-----------~~~l----~----------------~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~ 210 (657)
-. ...+ . ......+++.+.+.++ ..++.|...|++++..+-.. +.
T Consensus 207 d~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~--~~~~aVvyEa~k~I~~l~~~-~~- 282 (355)
T 3tjz_B 207 DRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLR--NKHEMVVYEAASAIVNLPGC-SA- 282 (355)
T ss_dssp CHHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCC--CSSHHHHHHHHHHHTC--------
T ss_pred chHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHc--CCChHHHHHHHHHHHhccCC-CH-
Confidence 10 0000 0 0012345555666666 56777888888877664321 10
Q ss_pred cCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006201 211 FSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSS 286 (657)
Q Consensus 211 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~ 286 (657)
.......+.+..++.++++.+|-.++..+..++..+|..+..+-.++.+ +++|.+..++..|+..+..
T Consensus 283 ----~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~----li~d~n~sI~t~Aittllk 350 (355)
T 3tjz_B 283 ----KELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLEN----LVTDANRSIATLAITTLLK 350 (355)
T ss_dssp ---------CCCTHHHHHHSSSSSSHHHHHHCC-------------------------------------------
T ss_pred ----HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHH----HccCCcHhHHHHHHHHhhh
Confidence 0111222333344556788999999999999999888777665555443 5677777787777754433
No 94
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.23 E-value=0.001 Score=58.75 Aligned_cols=148 Identities=11% Similarity=0.090 Sum_probs=115.9
Q ss_pred chHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchh
Q 006201 130 PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQA 209 (657)
Q Consensus 130 ~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~ 209 (657)
.+.+..+...+.+.|+.++..++.++..+.+.. +..+....++.+++.++..+. +.+..|...|++|+..++.-.+
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk--~~dEkval~A~r~L~~LLe~vp- 107 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALS--QENEKVTIKALRALGYLVKDVP- 107 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCC--STTHHHHHHHHHHHHHHHTTCC-
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHcCCC-
Confidence 467888999999999999999999999999987 555545678999999999998 7889999999999999886432
Q ss_pred hcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhH
Q 006201 210 NFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCD 289 (657)
Q Consensus 210 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~ 289 (657)
..+.....+...+......+++-.+..+.+.++.+ .+....+.++..+...+++.+.+++..++.++..++.
T Consensus 108 --L~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~ 179 (265)
T 3b2a_A 108 --MGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLN 179 (265)
T ss_dssp --BCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGG
T ss_pred --CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC------CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhc
Confidence 12222355777777777788888888888888876 1233346677777788888888888888888777764
No 95
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.20 E-value=6.3e-07 Score=74.81 Aligned_cols=121 Identities=13% Similarity=0.205 Sum_probs=75.2
Q ss_pred chhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhcc
Q 006201 364 IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHG 443 (657)
Q Consensus 364 ~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~ 443 (657)
..+.-.+.+...+.+++|.+|..|+.+|+.+.+. . ++.++..+ +|+++.||..|+++++++..
T Consensus 9 ~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~----~--------~~~L~~~L-~d~~~~vR~~A~~aL~~~~~---- 71 (131)
T 1te4_A 9 HHSSGLVPRGSHMADENKWVRRDVSTALSRMGDE----A--------FEPLLESL-SNEDWRIRGAAAWIIGNFQD---- 71 (131)
T ss_dssp ------------CCSSCCCSSSSCCSSTTSCSST----T--------HHHHHHGG-GCSCHHHHHHHHHHHGGGCS----
T ss_pred cccccHHHHHHHhcCCCHHHHHHHHHHHHHhCch----H--------HHHHHHHH-cCCCHHHHHHHHHHHHhcCC----
Confidence 3445556666777888888888888887765431 1 36667778 88888899888888876542
Q ss_pred CcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhh
Q 006201 444 STLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESR 522 (657)
Q Consensus 444 ~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~ 522 (657)
...++.|...+.| ++.||..|+++|..+.. +..++.|...+++. +..
T Consensus 72 -------------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------------~~a~~~L~~~l~d~---~~~ 119 (131)
T 1te4_A 72 -------------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------------ERVRAAMEKLAETG---TGF 119 (131)
T ss_dssp -------------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------------HHHHHHHHHHTTSC---CTH
T ss_pred -------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------------HHHHHHHHHHHhCC---CHH
Confidence 2345666777765 68888888888887632 23455566666544 357
Q ss_pred HHHHHHHHHHH
Q 006201 523 LRTAAYETLNE 533 (657)
Q Consensus 523 ~~~~~~~al~~ 533 (657)
+|..+..+|+.
T Consensus 120 vr~~A~~aL~~ 130 (131)
T 1te4_A 120 ARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHGGG
T ss_pred HHHHHHHHHHh
Confidence 77777777653
No 96
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.11 E-value=0.00037 Score=77.78 Aligned_cols=406 Identities=12% Similarity=0.083 Sum_probs=207.9
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHhhh--cCC----CCCchHHHHHHHhhc-CCChhHHHHHHHHHHHHhhhccc
Q 006201 92 QIKSFILKTLSSPAHDARSTASQVVAKVAGIE--LPH----KQWPELIGALLSNIH-QLPPHTKQATLETLGYICEEVSS 164 (657)
Q Consensus 92 ~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~--~~~----~~~~~l~~~l~~~l~-~~~~~~~~~~l~~l~~i~~~~~~ 164 (657)
.+++.+-....+.+..-...+|++++-+.... +|. ..|.-+.|.|...+. +-+++....=..|+..+....+|
T Consensus 508 ~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~Dp 587 (997)
T 1vsy_5 508 DLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDL 587 (997)
T ss_dssp GHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCCh
Confidence 35555556666777777889999999887753 221 246678888888888 45555544444455555555544
Q ss_pred cccchhhHhHHHHHHHh--c-c-CCCCC--CHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHH
Q 006201 165 DAVEQDHVNKILTAVVQ--G-M-NASES--NNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQA 238 (657)
Q Consensus 165 ~~l~~~~~~~l~~~l~~--~-l-~~~~~--~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~ 238 (657)
..+ ..++..+.. . + .+++. ...-|..-++.+..-..| .+.. .+.++..+. ++.+...+|..
T Consensus 588 rR~-----~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~w---r~~~---~~~~l~~~~--l~h~y~~VRe~ 654 (997)
T 1vsy_5 588 RRS-----KTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEF---RAPD---VGKLFDELV--FDHPYDQVRQA 654 (997)
T ss_dssp GGC-----HHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTT---SSCC---CHHHHHHCC--SCCSCHHHHHH
T ss_pred hhh-----HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhcc---cccc---HHHHHHHHH--hCCChHHHHHH
Confidence 444 345555522 1 1 11111 112244444444333333 2221 145555555 67788999999
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHH---Hh----cCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCC---
Q 006201 239 AFECLVAISSTYYEKLAPYIQDIFNITAKA---VR----EDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDI--- 308 (657)
Q Consensus 239 ~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~---~~----~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~--- 308 (657)
+...|..+.......--+....+++..... +. ...+.+.....+....+.... ...+...+.....+..
T Consensus 655 Ig~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~-~~~~~~~~~~~~~s~y~~~ 733 (997)
T 1vsy_5 655 VAKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLE-DSVVGLNPQQFIKTDYFYR 733 (997)
T ss_dssp HHHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGG-GTTSSCCSTTTTTSHHHHH
T ss_pred HHHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhh-hcccccCccccchHHHHHH
Confidence 999998887654100001222333221110 00 001111111111111111000 0000000000000000
Q ss_pred --------------chhhHHHhhhhh-HHHHHHHHhhhhcCccccCCCcchHhhh-HHHHHHHHHhhc-CCCchhchHHH
Q 006201 309 --------------PCFYFIKHALPV-LVPLLLETLLKQEEDQDQDEGAWNIAMA-GGTCLGLVARTV-GDDIVPLVMPF 371 (657)
Q Consensus 309 --------------~~~~~~~~~l~~-l~~~l~~~l~~~~~d~~~d~~~~~~r~~-a~~~L~~l~~~~-~~~~~~~l~~~ 371 (657)
.......++++. ++|.++.. .++.| + -++... |..++..++... +...++.++..
T Consensus 734 ~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l----~~~~d-~---~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~ 805 (997)
T 1vsy_5 734 TSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGL----VKHKD-V---CALASLDPVRLYAGLGYMPIRKNHVAAIVDY 805 (997)
T ss_dssp HHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTT----SSCSH-H---HHHTTCCSHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHH----hhcCc-H---HHHHhhHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 000011122222 33333221 11111 1 123444 556666665433 44456666666
Q ss_pred HHhhhc-CcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHhhh-ccCcCCC
Q 006201 372 VEENIT-KQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPN-NHVKDTTAWTLGRMFEFL-HGSTLET 448 (657)
Q Consensus 372 l~~~l~-~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~-~~vr~~a~~~l~~l~~~~-~~~~~~~ 448 (657)
+.+... +++| .|.+++..+..+.-.-..-........+...++..| .|++ ..||..|..+|+-+.... .
T Consensus 806 l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L-~D~q~~EVRe~Aa~tLsgll~c~~~------ 877 (997)
T 1vsy_5 806 VCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNL-YNEQFVEVRVRAASILSDIVHNWKE------ 877 (997)
T ss_dssp SSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTT-TCSSCHHHHHHHHHHHHHHHHSCCS------
T ss_pred HHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHHHcCCc------
Confidence 666665 5789 999998877654421000000112256778888889 9999 999999999998886653 2
Q ss_pred ccCCcccHHHHHHHHHHHccc-------------chHHHHHHHHHHHHHHhhccCCCCCCCCC--chhHHHHHHHHHHhh
Q 006201 449 PIINQGNCQQIISVLLQSMKD-------------VPNVAEKACGALYFLAQGFEDAISPSSPL--TPFFQEIVQALLTVT 513 (657)
Q Consensus 449 ~~~~~~~~~~il~~l~~~l~d-------------~~~v~~~a~~al~~l~~~~~~~~~~~~~l--~~~~~~i~~~L~~~l 513 (657)
......++..+.+.+.. ....|..|+-+|+.++..+ +-.+ .+++++++..|.+..
T Consensus 878 ----~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~------Py~vP~P~w~P~~l~~La~~~ 947 (997)
T 1vsy_5 878 ----EQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAF------PYVFPLPPWIPKNLSNLSSWA 947 (997)
T ss_dssp ----HHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTC------SCCSSCCTHHHHHHHHHHTTS
T ss_pred ----hhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhC------CCCCCCCcccHHHHHHHHHHh
Confidence 11112233333222210 1246778889999999864 3444 679999998888777
Q ss_pred ccccchhhhHHHHHHHHHHHHHHhcccc
Q 006201 514 HREDAGESRLRTAAYETLNEVVRCSTDE 541 (657)
Q Consensus 514 ~~~~~~~~~~~~~~~~al~~l~~~~~~~ 541 (657)
.+++ -++..+=++++.+-++..+.
T Consensus 948 ~~~~----~i~~tvk~tlseFkrTH~D~ 971 (997)
T 1vsy_5 948 RTSG----MTGNAAKNTISEFKKVRADT 971 (997)
T ss_dssp SSCS----SHHHHTHHHHHHHHHHTSTT
T ss_pred CCCC----chHHHHHHHHHHHHhccchh
Confidence 7643 46667778888887777654
No 97
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.09 E-value=0.0022 Score=66.43 Aligned_cols=323 Identities=11% Similarity=0.094 Sum_probs=187.1
Q ss_pred chHHHHHHHhhcCC-ChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhch
Q 006201 130 PELIGALLSNIHQL-PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQ 208 (657)
Q Consensus 130 ~~l~~~l~~~l~~~-~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 208 (657)
.+-++.|...+++. -..-|+.|+..|..+.+.+ +... ...-++.+++.|..+..+.++-+.++++|.+++.-.+
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y-~~~V----g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~ 94 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY-RLEV----GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE 94 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT-TTHH----HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh-HHHh----hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence 45666666666543 4567889999999998877 3322 2333566666666544678888889999988764321
Q ss_pred hhc--------CCh-h--hHH------HHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHH---HHHHHHHHH
Q 006201 209 ANF--------SND-M--ERD------YIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ---DIFNITAKA 268 (657)
Q Consensus 209 ~~~--------~~~-~--~~~------~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~---~l~~~~~~~ 268 (657)
..- ..+ . +.+ .-++.++.+++..+..+|..++++|..++...++.....+- .-++.++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l 174 (651)
T 3grl_A 95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL 174 (651)
T ss_dssp -------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence 100 000 0 111 24667788889999999999999999999998886665543 456777778
Q ss_pred HhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhh
Q 006201 269 VREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMA 348 (657)
Q Consensus 269 ~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~ 348 (657)
+.+..+.+|-.++-++..++....++.+- -.++..++.+++.+..... -.-...
T Consensus 175 L~d~rE~iRneallLL~~Lt~~n~~iQkl------------------VAFEnaFe~Lf~Ii~~Eg~--------~~Ggiv 228 (651)
T 3grl_A 175 LADSREVIRNDGVLLLQALTRSNGAIQKI------------------VAFENAFERLLDIITEEGN--------SDGGIV 228 (651)
T ss_dssp GGCSSHHHHHHHHHHHHHHHTTCHHHHHH------------------HHHTTHHHHHHHHHHHHTG--------GGSHHH
T ss_pred HhCchHHHHHHHHHHHHHHhcCCHHHHHH------------------HHHhccHHHHHHHHHhcCC--------Cccchh
Confidence 88888999999999988888764433211 1123445666665553211 011123
Q ss_pred HHHHHHHHHhhcC-----------CCchhchHHHHHhhhcCcchhhHH-----HHHHHHHHhhcCCCCC-cchH---H--
Q 006201 349 GGTCLGLVARTVG-----------DDIVPLVMPFVEENITKQEWRQRE-----AATYAFGSILEGPSPE-KLVP---L-- 406 (657)
Q Consensus 349 a~~~L~~l~~~~~-----------~~~~~~l~~~l~~~l~~~~~~~r~-----aal~~l~~i~~~~~~~-~~~~---~-- 406 (657)
..+||.-+...+. ...+|.+.+.+...-....|..+. +++.++..+.....+. .... .
T Consensus 229 v~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~ 308 (651)
T 3grl_A 229 VEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMF 308 (651)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 3455544444331 245666666554211123464322 2334455555442110 0101 1
Q ss_pred HHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHhhhccCc-----CCCccCCcccHHHHHHHHHHHccc--chHHHHHH
Q 006201 407 VNIALNFMLTALMQDP--NNHVKDTTAWTLGRMFEFLHGST-----LETPIINQGNCQQIISVLLQSMKD--VPNVAEKA 477 (657)
Q Consensus 407 ~~~i~~~l~~~l~~d~--~~~vr~~a~~~l~~l~~~~~~~~-----~~~~~~~~~~~~~il~~l~~~l~d--~~~v~~~a 477 (657)
-..++..++..+ -.+ ...||..|+.+++.+....+... ...|.. +-.+.++..+...+.+ ...+|.+|
T Consensus 309 ~~g~l~~Ll~ll-~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~--~~~p~li~lL~~~~~~~~~~~lR~Aa 385 (651)
T 3grl_A 309 QCGLLQQLCTIL-MATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSN--PPRPAIVVLLMSMVNERQPFVLRCAV 385 (651)
T ss_dssp HTTHHHHHHHHH-TCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSS--SCEEHHHHHHHHHTCTTSCHHHHHHH
T ss_pred HCCCHHHHHHHH-ccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCC--CCcChHHHHHHHHhcccccHHHHHHH
Confidence 123566777766 433 56789999999988776432000 000100 0113344555555554 36789999
Q ss_pred HHHHHHHHh
Q 006201 478 CGALYFLAQ 486 (657)
Q Consensus 478 ~~al~~l~~ 486 (657)
+.++..++.
T Consensus 386 ~~cl~ay~~ 394 (651)
T 3grl_A 386 LYCFQCFLY 394 (651)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998873
No 98
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.03 E-value=0.002 Score=69.89 Aligned_cols=157 Identities=10% Similarity=0.107 Sum_probs=87.9
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHH-HHHhccCCCCCCHHHHHHHHHHHHHHHhhchhh
Q 006201 132 LIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILT-AVVQGMNASESNNDVRLAATRALYNALGFAQAN 210 (657)
Q Consensus 132 l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~-~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~ 210 (657)
++|. ++.++++++..|..|+.++..++.......+ -....++. .+...+. |++.+||.+|..+|.++.......
T Consensus 36 i~Pl-l~~L~S~~~~~r~~A~~al~~l~~~~~~~~l--~~~~~~v~~ll~~lL~--D~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 36 ILPV-LKDLKSPDAKSRTTAAGAIANIVQDAKCRKL--LLREQVVHIVLTETLT--DNNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp THHH-HHHHSSSCCSHHHHHHHHHHHHTTSHHHHHH--HHHTTHHHHHHHTTTT--CSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHH-HHHcCCCCHHHHHHHHHHHHHHHcCcHHHHH--HHHcCCHHHHHHHHcC--CCCHHHHHHHHHHHHHHHhhcCch
Confidence 4454 4558899999999999999999874311111 11233444 4566677 899999999999999986431111
Q ss_pred cCChhhHHHHHHHHHhhcc--------------CCc-------HHHHHHHHHHHHHHHHHHHHhhHHhHH-HHHHHHHHH
Q 006201 211 FSNDMERDYIMRVVCEATL--------------SPE-------VKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKA 268 (657)
Q Consensus 211 ~~~~~~~~~il~~l~~~~~--------------~~~-------~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~ 268 (657)
......+..+++.+..++. ... +++...++.+|..+++...+.+..... ..++.++..
T Consensus 111 ~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~ 190 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFR 190 (684)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHH
Confidence 1000111112222221110 011 234445667777777665543332221 334444333
Q ss_pred Hhc---CChHHHHHHHHHHHHHhHHHHH
Q 006201 269 VRE---DEEPVALQAIEFWSSVCDEEID 293 (657)
Q Consensus 269 ~~~---~~~~v~~~a~~~~~~l~~~~~~ 293 (657)
+.+ ...+++..+.+++..+++...+
T Consensus 191 L~~~~~~~~~v~~~a~~~L~~ls~dn~~ 218 (684)
T 4gmo_A 191 LISADIAPQDIYEEAISCLTTLSEDNLK 218 (684)
T ss_dssp HHHHCCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHHhccCHH
Confidence 322 3457889999999998876443
No 99
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.01 E-value=1.4e-05 Score=66.46 Aligned_cols=104 Identities=18% Similarity=0.274 Sum_probs=80.0
Q ss_pred chHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCC
Q 006201 343 WNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDP 422 (657)
Q Consensus 343 ~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~ 422 (657)
+.+|..|..+|..+ +... ++.+...+.+++|.+|..|+.+|+.+.. +..++.+...+ +|+
T Consensus 26 ~~vR~~A~~~L~~~----~~~~----~~~L~~~L~d~~~~vR~~A~~aL~~~~~-----------~~a~~~L~~~L-~d~ 85 (131)
T 1te4_A 26 KWVRRDVSTALSRM----GDEA----FEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEPLIKLL-EDD 85 (131)
T ss_dssp CCSSSSCCSSTTSC----SSTT----HHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHHHHHHH-HHC
T ss_pred HHHHHHHHHHHHHh----CchH----HHHHHHHHcCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHH-cCC
Confidence 56777766666543 2222 3667778889999999999999998863 23467888888 999
Q ss_pred cHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHH
Q 006201 423 NNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYF 483 (657)
Q Consensus 423 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~ 483 (657)
++.||.+|+++++++.. +..++.|...++| ++.||..|+.+|..
T Consensus 86 ~~~VR~~A~~aL~~~~~-----------------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 86 SGFVRSGAARSLEQIGG-----------------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp CTHHHHHHHHHHHHHCS-----------------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHhCc-----------------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 99999999999997752 3456788888886 68999999988764
No 100
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.97 E-value=0.00074 Score=67.46 Aligned_cols=253 Identities=11% Similarity=0.065 Sum_probs=156.3
Q ss_pred CCCc-hHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccc-----cccchhhHhHHHHHH-HhccC---CCCCCHHHHHHH
Q 006201 127 KQWP-ELIGALLSNIHQLPPHTKQATLETLGYICEEVSS-----DAVEQDHVNKILTAV-VQGMN---ASESNNDVRLAA 196 (657)
Q Consensus 127 ~~~~-~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~-----~~l~~~~~~~l~~~l-~~~l~---~~~~~~~vr~~a 196 (657)
..|| ++...|...+-++++.+|.+|..+|.++++.... .....+-.-.++-.+ +.-.. ++..-..||..+
T Consensus 169 ~eWPfqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETa 248 (800)
T 3oc3_A 169 IENVLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAA 248 (800)
T ss_dssp CCSGGGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHH
Confidence 4564 3778888888899999999999999999886521 111111122222222 11111 112345799999
Q ss_pred HHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhcCChHH
Q 006201 197 TRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPV 276 (657)
Q Consensus 197 l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v 276 (657)
.++|+.+ .+++..+ .++..+......+.|++|...+-.+.-+ .+.+.. ++.+++.++..+.+.+++|
T Consensus 249 AQtLGaL-~hLp~e~-------~IL~qLV~~l~~~~WEVRHGGLLGLKYL----~DLL~~-Ld~Vv~aVL~GL~D~DDDV 315 (800)
T 3oc3_A 249 AYLLSRI-YPLIGPN-------DIIEQLVGFLDSGDWQVQFSGLIALGYL----KEFVED-KDGLCRKLVSLLSSPDEDI 315 (800)
T ss_dssp HHHHHHH-TTTSCSC-------CHHHHHTTGGGCSCHHHHHHHHHHHHHT----GGGCCC-HHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHH-HhCChhH-------HHHHHHHhhcCCCCeeehhhhHHHHHHH----HHHHHH-HHHHHHHHHhhcCCcccHH
Confidence 9999998 6665431 2333333455678899999988777765 222222 7888999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHH
Q 006201 277 ALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLV 356 (657)
Q Consensus 277 ~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l 356 (657)
|..|.+.|.-++. ...++.++..+...+...+ |-+-+ -....+.|..+
T Consensus 316 RAVAAetLiPIA~-------------------------p~~l~~LL~iLWd~L~~LD------DLSAS-TgSVMdLLAkL 363 (800)
T 3oc3_A 316 KLLSAELLCHFPI-------------------------TDSLDLVLEKCWKNIESEE------LISVS-KTSNLSLLTKI 363 (800)
T ss_dssp HHHHHHHHTTSCC-------------------------SSTHHHHHHHHHHHHHTCC------SCCTT-HHHHHHHHHHH
T ss_pred HHHHHHHhhhhcc-------------------------hhhHHHHHHHHHHHhhhhc------ccchh-hHHHHHHHHHH
Confidence 9999987766651 0123455666666666431 11111 12234566666
Q ss_pred HhhcCC-CchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 006201 357 ARTVGD-DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLG 435 (657)
Q Consensus 357 ~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~ 435 (657)
+..-.. ...|.++|.+...+.++-..+|.|++.++..+.. ...+.-+.+. .+ -.++..|+..+..+..
T Consensus 364 ~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL~-------~~~LRLIFQN---IL-LE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 364 YRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLSE-------ESIDFLVAEV---VL-IEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCCC-------HHHHHHHHHH---HH-HCSCHHHHHHHHHHHH
T ss_pred HcCCcccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHHh-------hhHHHHHHHH---HH-hCCcHHHHHHHHHHHH
Confidence 554321 2234555555556667767899999999877761 1233333332 34 5788889988877664
No 101
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.94 E-value=0.0002 Score=71.40 Aligned_cols=159 Identities=11% Similarity=0.111 Sum_probs=109.9
Q ss_pred chHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCC
Q 006201 343 WNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDP 422 (657)
Q Consensus 343 ~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~ 422 (657)
-.+|..++++|+.+ ...+++ ...+...+ ..+..+.|.+|++++..+..+.+-. .. ++.+++.++..| +|+
T Consensus 242 APVRETaAQtLGaL-~hLp~e-~~IL~qLV-~~l~~~~WEVRHGGLLGLKYL~DLL-----~~-Ld~Vv~aVL~GL-~D~ 311 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGP-NDIIEQLV-GFLDSGDWQVQFSGLIALGYLKEFV-----ED-KDGLCRKLVSLL-SSP 311 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCS-CCHHHHHT-TGGGCSCHHHHHHHHHHHHHTGGGC-----CC-HHHHHHHHHHHT-TCS
T ss_pred eehHHHHHHHHHHH-HhCChh-HHHHHHHH-hhcCCCCeeehhhhHHHHHHHHHHH-----HH-HHHHHHHHHhhc-CCc
Confidence 47899999999999 777666 33333333 4556778999999999999983322 11 788999999999 999
Q ss_pred cHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc--c-hHHHHHHHHHHHHHHhhccCCCCCCCCCc
Q 006201 423 NNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--V-PNVAEKACGALYFLAQGFEDAISPSSPLT 499 (657)
Q Consensus 423 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~-~~v~~~a~~al~~l~~~~~~~~~~~~~l~ 499 (657)
+-.||..|+.++.-++ .+..++.++..+...|.+ + ..-.......|+.++..-. .....
T Consensus 312 DDDVRAVAAetLiPIA-------------~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~-----~a~~d 373 (800)
T 3oc3_A 312 DEDIKLLSAELLCHFP-------------ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENP-----ELSIP 373 (800)
T ss_dssp SHHHHHHHHHHHTTSC-------------CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCT-----TCCCC
T ss_pred ccHHHHHHHHHhhhhc-------------chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCc-----ccccC
Confidence 9999999998875444 235678888888887763 2 2223344456666665411 11122
Q ss_pred hhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHH
Q 006201 500 PFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVV 535 (657)
Q Consensus 500 ~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~ 535 (657)
| .++|.|...+...- .++|..++.++.++.
T Consensus 374 p---~LVPRL~PFLRHtI---TSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 374 P---ERLKDIFPCFTSPV---PEVRTSILNMVKNLS 403 (800)
T ss_dssp S---GGGGGTGGGGTCSS---HHHHHHHHHHTTTCC
T ss_pred h---HHHHHHHhhhcCCc---HHHHHHHHHHHHHHH
Confidence 2 66777777776654 578888888876665
No 102
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.48 E-value=0.00057 Score=62.32 Aligned_cols=176 Identities=13% Similarity=0.032 Sum_probs=113.7
Q ss_pred chHHHHHhhhcCcch--hhHHHHHHHHHHhhcCCCCCcchHHH--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhc
Q 006201 367 LVMPFVEENITKQEW--RQREAATYAFGSILEGPSPEKLVPLV--NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLH 442 (657)
Q Consensus 367 ~l~~~l~~~l~~~~~--~~r~aal~~l~~i~~~~~~~~~~~~~--~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~ 442 (657)
..+|.+.+.+.+++. ..+..|..++..++.+. ......+ ...+|.++..| .++++.+|..|+|+|..++..-.
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~--~~~r~~I~~~G~Ip~LV~lL-~s~~~~vq~~Aa~aL~nLa~~~~ 84 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQK--SEARKRVNQLRGILKLLQLL-KVQNEDVQRAVCGALRNLVFEDN 84 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC--HHHHHHHHHTTHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTCH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC--cHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCH
Confidence 345566677777776 77777888888888542 1122222 24679999999 99999999999999999987421
Q ss_pred cCcCCCccCCccc--HHHHHHHHHHHccc--chHHHHHHHHHHHHHHhhccCCCCCCCCCc-hhHHHHHHHHHHhhc---
Q 006201 443 GSTLETPIINQGN--CQQIISVLLQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSPLT-PFFQEIVQALLTVTH--- 514 (657)
Q Consensus 443 ~~~~~~~~~~~~~--~~~il~~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~-~~~~~i~~~L~~~l~--- 514 (657)
..... -...+|.|++.|.+ +..++..|+.+|.++.... ... .....-++.|...+.
T Consensus 85 --------~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~--------~~k~~i~~~~i~~Lv~ll~~p~ 148 (233)
T 3tt9_A 85 --------DNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND--------KLKNLMITEALLTLTENIIIPF 148 (233)
T ss_dssp --------HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG--------GGHHHHHHHHHHHHCCCCCHHH
T ss_pred --------HHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh--------hhHHHHHhccHHHHHHHHhccc
Confidence 11111 23568899999873 6789999999999987531 111 233445666655432
Q ss_pred -cc---------cchhhhHHHHHHHHHHHHHHhcccccHHHHH---HHHHHHHHHHHHHHh
Q 006201 515 -RE---------DAGESRLRTAAYETLNEVVRCSTDETAPMVM---QLVPLIMMELHQTLE 562 (657)
Q Consensus 515 -~~---------~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~---~l~~~l~~~l~~~~~ 562 (657)
.. ...+..++.++..+|..+.....+ ....+. -+++.++..++....
T Consensus 149 sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~-~R~~~r~~~Gli~~Lv~~l~~~~~ 208 (233)
T 3tt9_A 149 SGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGAD-GRKAMRRCDGLIDSLVHYVRGTIA 208 (233)
T ss_dssp HCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHH-HHHHHHTSTTHHHHHHHHHHHHHH
T ss_pred cCCcccccccccccchHHHHHHHHHHHHHHhcCCHH-HHHHHHHCCCcHHHHHHHHHhhhh
Confidence 10 011357888889999888775432 222222 366777777776543
No 103
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.47 E-value=0.035 Score=57.67 Aligned_cols=319 Identities=9% Similarity=0.072 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCC--ChhHHHHHHHHHHHHhhhcccc
Q 006201 89 VKAQIKSFILKTLSSPA-HDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQL--PPHTKQATLETLGYICEEVSSD 165 (657)
Q Consensus 89 ~~~~i~~~ll~~l~~~~-~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~~l~~l~~i~~~~~~~ 165 (657)
...+..+.|...+.+.. ..-|+.|...|..+++.+ +...=..-++.+++.++.+ |.++...++..|..+...-..+
T Consensus 18 s~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y-~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~ 96 (651)
T 3grl_A 18 TEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY-RLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE 96 (651)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT-TTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred ChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh-HHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence 33445556677776654 677999999999987643 3211122367777777653 6777888888887665432110
Q ss_pred -----------ccchhh------HhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhh-HHHHHHHHHhh
Q 006201 166 -----------AVEQDH------VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDME-RDYIMRVVCEA 227 (657)
Q Consensus 166 -----------~l~~~~------~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~-~~~il~~l~~~ 227 (657)
.++... -..-++.++..+. ..+..+|..++++|..++..-++....-.. ...-++.+...
T Consensus 97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~--~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l 174 (651)
T 3grl_A 97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLE--EFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL 174 (651)
T ss_dssp -----------CHHHHHHHHHHHSTHHHHHHHHHTT--CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred cccccccccchHHHHHHHHHHHcCCccHHHHHHHhc--CccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence 010001 1344677888887 789999999999999987542211100000 01245677888
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHhhHHhH--HHHHHHHHHHHhcC----ChHHHHHHHHHHHHHhHHHHHhhhhcCCC
Q 006201 228 TLSPEVKIRQAAFECLVAISSTYYEKLAPYI--QDIFNITAKAVRED----EEPVALQAIEFWSSVCDEEIDILEEYGGD 301 (657)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~~~~~~~~~----~~~v~~~a~~~~~~l~~~~~~~~~~~~~~ 301 (657)
+.++.+.+|..++-.|..+....++. ...+ ...++.++..+..+ ...+...++..+..+.+..+.
T Consensus 175 L~d~rE~iRneallLL~~Lt~~n~~i-QklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~s-------- 245 (651)
T 3grl_A 175 LADSREVIRNDGVLLLQALTRSNGAI-QKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNS-------- 245 (651)
T ss_dssp GGCSSHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHH--------
T ss_pred HhCchHHHHHHHHHHHHHHhcCCHHH-HHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHH--------
Confidence 88889999999999999999877542 1111 23455555555543 335677788888777764311
Q ss_pred CCCCCCCchhhHHHh--hhhhHHHHHHHHhhhhcCccccCCCcchHhhhH-----HHHHHHHHhhcCC---------Cc-
Q 006201 302 FSGDSDIPCFYFIKH--ALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAG-----GTCLGLVARTVGD---------DI- 364 (657)
Q Consensus 302 ~~~~~~~~~~~~~~~--~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a-----~~~L~~l~~~~~~---------~~- 364 (657)
..++++. .++.+.+.+ .. + +++..|+..+.+ ..++..+....+. .+
T Consensus 246 --------NQ~~FrEt~~i~~L~~LL----~~-~----~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~ 308 (651)
T 3grl_A 246 --------NQNFFKEGSYIQRMKPWF----EV-G----DENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMF 308 (651)
T ss_dssp --------HHHHHHHTTCGGGGGGGG----CC-C----SCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH
T ss_pred --------HHHHHHHcCCHHHHHHHh----CC-C----ccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 1123322 233333322 21 1 123458644322 1222222221111 00
Q ss_pred hhchHHHHHhhhcCc--chhhHHHHHHHHHHhhcCCCCCcchHHH-----------HHHHHHHHHHhcCC-CcHHHHHHH
Q 006201 365 VPLVMPFVEENITKQ--EWRQREAATYAFGSILEGPSPEKLVPLV-----------NIALNFMLTALMQD-PNNHVKDTT 430 (657)
Q Consensus 365 ~~~l~~~l~~~l~~~--~~~~r~aal~~l~~i~~~~~~~~~~~~~-----------~~i~~~l~~~l~~d-~~~~vr~~a 430 (657)
-.-+++.+.+.+.++ ...+|..|+.+++.++.+.. . ...++ +.++..++..+ ++ ....+|.+|
T Consensus 309 ~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~-~-~Q~~fa~~~vp~~~~~p~li~lL~~~~-~~~~~~~lR~Aa 385 (651)
T 3grl_A 309 QCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQ-V-NQDYFASVNAPSNPPRPAIVVLLMSMV-NERQPFVLRCAV 385 (651)
T ss_dssp HTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCH-H-HHHHHHHCEESSSSCEEHHHHHHHHHT-CTTSCHHHHHHH
T ss_pred HCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCH-H-HHHHHhhccCCCCCCcChHHHHHHHHh-cccccHHHHHHH
Confidence 001223333333333 35788899999999887641 1 11111 22444455556 44 457889999
Q ss_pred HHHHHHHHh
Q 006201 431 AWTLGRMFE 439 (657)
Q Consensus 431 ~~~l~~l~~ 439 (657)
+.|+..+..
T Consensus 386 ~~cl~ay~~ 394 (651)
T 3grl_A 386 LYCFQCFLY 394 (651)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999988764
No 104
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=97.45 E-value=0.031 Score=62.46 Aligned_cols=440 Identities=8% Similarity=0.026 Sum_probs=211.7
Q ss_pred HHHHHHHHHHHHHHhhh---cCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcc---ccccchhhHhHHHHHHH
Q 006201 107 DARSTASQVVAKVAGIE---LPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVS---SDAVEQDHVNKILTAVV 180 (657)
Q Consensus 107 ~vr~~aa~~l~~i~~~~---~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~---~~~l~~~~~~~l~~~l~ 180 (657)
..+..-+..+..+++.. +....++.+.+.+-..+.+.+......+..++..++.... .+.. ...-.-+.|.+.
T Consensus 481 ~F~~~~v~l~k~lf~l~~rn~~~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~-~~~w~~l~p~l~ 559 (997)
T 1vsy_5 481 VFSSGNVSFFSLVILLISSGFCELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDL-DKRDTFIENFLA 559 (997)
T ss_dssp CCCHHHHHHHHHHHHHHTTTTCCCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTH-HHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHhcccchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHH-HHHHHHHHHHHH
Confidence 33455555555566422 3335789999999998888888888899999999877642 1222 233344556665
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhh-----ccCCcHHHHHHHHHHHHHHHHHHHHhhH
Q 006201 181 QGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEA-----TLSPEVKIRQAAFECLVAISSTYYEKLA 255 (657)
Q Consensus 181 ~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~-----~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 255 (657)
..+.+ +-+++.. ..=..++.++....+. --...+++.+... .+.++.=....-+..|..++....-.+.
T Consensus 560 ~~l~~-~lt~et~----~~W~~~i~~~~~~~Dp-rR~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~ 633 (997)
T 1vsy_5 560 KCLDY-ELNHDAF----EIWSTLAWWLPAVVDL-RRSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAP 633 (997)
T ss_dssp HHHSS-CCCTTHH----HHHHHHHHHHHHHSCG-GGCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSC
T ss_pred HHHhc-cCCchhH----HHHHHHHHHHhcCCCh-hhhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 55552 1223322 1122222222222111 1114566666221 1111110111122333333322222222
Q ss_pred HhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHH--------HhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHH
Q 006201 256 PYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEI--------DILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLE 327 (657)
Q Consensus 256 ~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 327 (657)
. ...++..++ +.++...+|......+..++.... ...+...+. .+...++... ..+.+...++.+++
T Consensus 634 ~-~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~-~~~~~~~~i~~~f~ 708 (997)
T 1vsy_5 634 D-VGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQSNPSISDPTTLLEAERND-PDGLGLPLKS-VPEKVDAYIKKQFE 708 (997)
T ss_dssp C-CHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSCCCCBSCHHHHHHHHHSC-SSSSCCCSSC-CCHHHHHHHHHHHH
T ss_pred c-HHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHhhccc-cccccCcccc-CcchHHHHHHHHHH
Confidence 2 345555555 777788888887777766665431 001111110 0111111100 00111112223333
Q ss_pred HhhhhcCcc-c---cCCCcchHhhhHHHHHHHHHhhcCCC----c---hhc-hHHHHHhhhcCcch-hhHHH-HHHHHHH
Q 006201 328 TLLKQEEDQ-D---QDEGAWNIAMAGGTCLGLVARTVGDD----I---VPL-VMPFVEENITKQEW-RQREA-ATYAFGS 393 (657)
Q Consensus 328 ~l~~~~~d~-~---~d~~~~~~r~~a~~~L~~l~~~~~~~----~---~~~-l~~~l~~~l~~~~~-~~r~a-al~~l~~ 393 (657)
.+.....+. + .+...-+....+..++.-+...++.. + ++. ++|.+.......+- ..... |..++..
T Consensus 709 ~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ 788 (997)
T 1vsy_5 709 IIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAG 788 (997)
T ss_dssp HHTGGGGTTSSCCSTTTTTSHHHHHHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHH
T ss_pred HHHHhhhcccccCccccchHHHHHHHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHH
Confidence 333211110 0 00000011112333333333333322 1 122 44444444333332 22333 4556666
Q ss_pred hhcCCCCCcchHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-c-
Q 006201 394 ILEGPSPEKLVPLVNIALNFMLTALMQ-DPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-V- 470 (657)
Q Consensus 394 i~~~~~~~~~~~~~~~i~~~l~~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~- 470 (657)
++...- -..+++.++..+.... + +++. +|.+++..+..+.-.-. ..........+...++..|.| .
T Consensus 789 ls~~~~---~~~~~~~~l~~l~~~~-~~s~sW-~R~~~L~~lq~~~f~n~------f~l~~~~~~~i~~~v~~~L~D~q~ 857 (997)
T 1vsy_5 789 LGYMPI---RKNHVAAIVDYVCSSN-VALSSN-QTKLQLAFIQHFLSAEL------LQLTEEEKNKILEFVVSNLYNEQF 857 (997)
T ss_dssp TSSSCC---CHHHHHHHHHHSSCTT-TTSCSS-SHHHHHHHHHHHHHHHT------TTSCTTHHHHTHHHHTTTTTCSSC
T ss_pred HhcCCC---CHHHHHHHHHHHHHHH-hcCCcH-HHHHHHHHHHHHHHHHH------HHcCHHHHHHHHHHHHHHhcCCcc
Confidence 665431 2345566666665555 4 6788 99999888766655321 113334446888888998987 7
Q ss_pred hHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhcc--cc-------chhhhHHHHHHHHHHHHHHhcccc
Q 006201 471 PNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHR--ED-------AGESRLRTAAYETLNEVVRCSTDE 541 (657)
Q Consensus 471 ~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~--~~-------~~~~~~~~~~~~al~~l~~~~~~~ 541 (657)
.+||..|+.+|..++.... .......++..+...+.+ .. ......|-.+.-+|+.++.+.|-.
T Consensus 858 ~EVRe~Aa~tLsgll~c~~--------~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~ 929 (997)
T 1vsy_5 858 VEVRVRAASILSDIVHNWK--------EEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYV 929 (997)
T ss_dssp HHHHHHHHHHHHHHHHSCC--------SHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHHHHHHHHHHHcCC--------chhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCC
Confidence 8999999999999987520 112233444444444322 00 001134557889999999999976
Q ss_pred c--HHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 006201 542 T--APMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQK 591 (657)
Q Consensus 542 ~--~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 591 (657)
+ .++++ .++..+.....+ +. .++..+=++++.+-+.
T Consensus 930 vP~P~w~P----~~l~~La~~~~~-------~~---~i~~tvk~tlseFkrT 967 (997)
T 1vsy_5 930 FPLPPWIP----KNLSNLSSWART-------SG---MTGNAAKNTISEFKKV 967 (997)
T ss_dssp SSCCTHHH----HHHHHHHTTSSS-------CS---SHHHHTHHHHHHHHHH
T ss_pred CCCCcccH----HHHHHHHHHhCC-------CC---chHHHHHHHHHHHHhc
Confidence 5 45655 444444443211 11 1344455667666554
No 105
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.44 E-value=0.0046 Score=55.14 Aligned_cols=147 Identities=14% Similarity=0.099 Sum_probs=109.6
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHH-hhcCCChhHHHHHHHHHHHHhhhccccccc
Q 006201 90 KAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLS-NIHQLPPHTKQATLETLGYICEEVSSDAVE 168 (657)
Q Consensus 90 ~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~-~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~ 168 (657)
.+.+......+..++...+|-.|+.+|+.. . + -++.++.+.. ...+++..+|+.+..+++.++....++.
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~---~---~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-- 139 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S---K---DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-- 139 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T---T---SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c---C---cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--
Confidence 344555555566677789999999988776 2 2 2789999998 6677889999999999999887433442
Q ss_pred hhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHH
Q 006201 169 QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISS 248 (657)
Q Consensus 169 ~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~ 248 (657)
.++.+..-.. |++..||..|++....+... ..+. .....+++.+..+..+++.-||+++...|..+.+
T Consensus 140 ------~l~~~~~W~~--d~n~~VRR~Ase~~rpW~~~--~~~k--~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK 207 (240)
T 3l9t_A 140 ------ALPIIDEWLK--SSNLHTRRAATEGLRIWTNR--PYFK--ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISK 207 (240)
T ss_dssp ------THHHHHHHHH--CSSHHHHHHHHHHTCSGGGS--TTTT--TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHhc--CCCHHHHHHHHHhhHHHhcc--chhh--cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Confidence 2445555666 89999999999987653321 1122 2346789999889999999999999999999999
Q ss_pred HHHHhhHHh
Q 006201 249 TYYEKLAPY 257 (657)
Q Consensus 249 ~~~~~~~~~ 257 (657)
..|+.+..+
T Consensus 208 ~~Pd~V~~~ 216 (240)
T 3l9t_A 208 KFPDLVKIE 216 (240)
T ss_dssp TCHHHHHHH
T ss_pred hCHHHHHHH
Confidence 998876554
No 106
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.00 E-value=0.0096 Score=54.18 Aligned_cols=188 Identities=11% Similarity=0.082 Sum_probs=115.4
Q ss_pred HHHHHhcCCCCh--HHHHHHHHHHHHHHhhhcCCCC----CchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccc
Q 006201 95 SFILKTLSSPAH--DARSTASQVVAKVAGIELPHKQ----WPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVE 168 (657)
Q Consensus 95 ~~ll~~l~~~~~--~vr~~aa~~l~~i~~~~~~~~~----~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~ 168 (657)
+.+++.|.++++ .++..++.++..++....+ +. -...+|.|++.+.++++.+++.|..+|..++..-+....
T Consensus 11 ~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~-~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~- 88 (233)
T 3tt9_A 11 ERAVSMLEADHMLPSRISAAATFIQHECFQKSE-ARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL- 88 (233)
T ss_dssp HHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHH-HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH-
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH-
Confidence 457788888876 8888888899988865422 11 146789999999999999999999999999764311100
Q ss_pred hhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhcc----------------CCc
Q 006201 169 QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATL----------------SPE 232 (657)
Q Consensus 169 ~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~----------------~~~ 232 (657)
.-.-..-+|.+++.+.+ ..+.++++.|..+|.++...-... ......-++.|...+. ..+
T Consensus 89 ~I~~~GaI~~Lv~lL~~-~~~~~~~e~a~~aL~nLS~~~~~k---~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQ-TRDLETKKQITGLLWNLSSNDKLK---NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHTTHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHTSGGGH---HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHcCCHHHHHHHHcc-CCCHHHHHHHHHHHHHHHcChhhH---HHHHhccHHHHHHHHhccccCCcccccccccccch
Confidence 01113457888888863 357899999999998876431110 0111122333333221 136
Q ss_pred HHHHHHHHHHHHHHHHHHHH---hhHH---hHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHh
Q 006201 233 VKIRQAAFECLVAISSTYYE---KLAP---YIQDIFNITAKAVRE--DEEPVALQAIEFWSSVC 288 (657)
Q Consensus 233 ~~~~~~~~~~l~~l~~~~~~---~~~~---~~~~l~~~~~~~~~~--~~~~v~~~a~~~~~~l~ 288 (657)
.+++..+..+|..++...++ .+.. .++.++.++-..+.+ .++..++.++..+..++
T Consensus 165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs 228 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHH
Confidence 78999999999998764322 1221 123333333333322 34455666665555543
No 107
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.97 E-value=0.35 Score=47.97 Aligned_cols=237 Identities=13% Similarity=0.143 Sum_probs=128.1
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhcCccc----HHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhh
Q 006201 6 TQILLNAQSVDGTVRKQAEESLKQYQEQNLPG----FLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (657)
Q Consensus 6 ~~~l~~~~s~d~~~r~~A~~~L~~~~~~~~~~----~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (657)
..+|... .++...++-|-+.+-+|-+. +|+ .+..++.+..+ .+..+|..|..-|-.+.+.
T Consensus 32 ~~Il~~~-kg~~k~K~LaaQ~I~kffk~-FP~l~~~Ai~a~lDLcED--ed~~IR~qaik~Lp~~ck~------------ 95 (507)
T 3u0r_A 32 QVILDGV-KGGTKEKRLAAQFIPKFFKH-FPELADSAINAQLDLCED--EDVSIRRQAIKELPQFATG------------ 95 (507)
T ss_dssp HHHHHGG-GSCHHHHHHHHHHHHHHGGG-CGGGHHHHHHHHHHHHTC--SSHHHHHHHHHHGGGGCCT------------
T ss_pred HHHHHhc-CCCHHHHHHHHHHHHHHHhh-ChhhHHHHHHHHHHHHhc--ccHHHHHHHHHhhHHHhhh------------
Confidence 3344433 34567777788888777654 333 44455555554 4788888877776665542
Q ss_pred cccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhh
Q 006201 82 WLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEE 161 (657)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~ 161 (657)
+....|-..|.++|..+++.-+...-.+|..+.+.+ |. ..+..++..+.++++.+|+.++..+..-+..
T Consensus 96 ------~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~D-pk----~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~ 164 (507)
T 3u0r_A 96 ------ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMD-AK----GTLGGLFSQILQGEDIVRERAIKFLSTKLKT 164 (507)
T ss_dssp ------TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-HH----HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGG
T ss_pred ------hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcC-hH----HHHHHHHHHHcccchHHHHHHHHHHHHHHhh
Confidence 234456677888888777766777777777777766 32 3334444444445778888888777655544
Q ss_pred ccccccchh--------------------------------------hHhHHHHHHHhccC--C--CCCCHHHHHHHHHH
Q 006201 162 VSSDAVEQD--------------------------------------HVNKILTAVVQGMN--A--SESNNDVRLAATRA 199 (657)
Q Consensus 162 ~~~~~l~~~--------------------------------------~~~~l~~~l~~~l~--~--~~~~~~vr~~al~~ 199 (657)
+.++.++.+ ...++++.+..... . ...+.+.-..-+.|
T Consensus 165 l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C 244 (507)
T 3u0r_A 165 LPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQC 244 (507)
T ss_dssp SCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHH
T ss_pred cchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHH
Confidence 433333211 11233333332111 0 01345555556666
Q ss_pred HHHHHhhchhhcCChhhHHHHHHHHHhhccC-----CcHHHHHHHHHHHHHHHHHHH--HhhHHhHHHHHHHHHHHH
Q 006201 200 LYNALGFAQANFSNDMERDYIMRVVCEATLS-----PEVKIRQAAFECLVAISSTYY--EKLAPYIQDIFNITAKAV 269 (657)
Q Consensus 200 l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~-----~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~~l~~~~~~~~ 269 (657)
+..-+.+++.......+..++...+++.+.. +.++.+...++.+..++...+ +.....++.+++.+...+
T Consensus 245 ~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~ym 321 (507)
T 3u0r_A 245 TRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYM 321 (507)
T ss_dssp HHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHC
Confidence 6666665554433333334444444443322 112356667777777766554 233344555555554433
No 108
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=96.81 E-value=0.81 Score=49.79 Aligned_cols=273 Identities=11% Similarity=0.156 Sum_probs=153.8
Q ss_pred hHHHhhhhhHHHHHHHHhhhhcCccccCCCcchHhhhHHHHHHHHHhhcC---CCchhchHHHHHhhhcC---cchhhHH
Q 006201 312 YFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVG---DDIVPLVMPFVEENITK---QEWRQRE 385 (657)
Q Consensus 312 ~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~L~~l~~~~~---~~~~~~l~~~l~~~l~~---~~~~~r~ 385 (657)
...+.++..+.|.++..|-..+ -.++..+..++..++...| +.++|.+++.+...+.. .+.....
T Consensus 331 ~~~~~fV~~l~p~~~~g~fSK~---------~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~ 401 (799)
T 1vsy_4 331 FCHEEIVEIFLNIISLGSQNKN---------PDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRII 401 (799)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSS---------HHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCC---------cchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHH
Confidence 3455566667777766554221 2456678899999999888 89999999988888766 4556667
Q ss_pred HHHHHHHHhhcCCC-CCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcC-CCccC------------
Q 006201 386 AATYAFGSILEGPS-PEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTL-ETPII------------ 451 (657)
Q Consensus 386 aal~~l~~i~~~~~-~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~------------ 451 (657)
+++.+|..++.... ......++..++..++..+ .-.++.--..++.++..++..++-... .+...
T Consensus 402 ~aL~~l~~~~r~lv~~~~yr~hl~~lL~l~LpgI-D~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~ 480 (799)
T 1vsy_4 402 SSLKQFTRVIRFIVMDKLYRVHITNVLSMLVSKL-DMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQ 480 (799)
T ss_dssp HHHHHHHTTHHHHTTSTTGGGHHHHHHHHHHHTC-CSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHhcCcccHHHHHHHHHHHhccC-CcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhh
Confidence 88888887664321 2345678888888888888 655666666778888888776541100 00000
Q ss_pred --------------------------------CcccHHHHHHHHHHHccc--chHHHHHHHHHHHHHHhhccCCCCCCCC
Q 006201 452 --------------------------------NQGNCQQIISVLLQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSP 497 (657)
Q Consensus 452 --------------------------------~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~ 497 (657)
...++..++..++..+.. +..+...-..++..++..+.+
T Consensus 481 ~~~~~l~~~~~~~~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~------- 553 (799)
T 1vsy_4 481 QHFYHIKCGESSKTFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDD------- 553 (799)
T ss_dssp HHHHHHHTTCCSSSCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCH-------
T ss_pred hhhhhhccccccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCH-------
Confidence 001222223333333321 112222222333344443321
Q ss_pred CchhHHHHHHHHHHhhccccchhhhHHHHHHHH----HHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhh-----cCCh
Q 006201 498 LTPFFQEIVQALLTVTHREDAGESRLRTAAYET----LNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQ-----KLSS 568 (657)
Q Consensus 498 l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~a----l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~-----~~~~ 568 (657)
+.++.++..+.+...+... ....+ .+.+. +..++...|. . +..++|.+...+...++++ ..++
T Consensus 554 --~if~~~l~k~~~fv~~n~~-~~a~~-~v~~L~~~~~~a~~~~~P~-~---~~~~~p~l~~~i~~~i~~ga~s~rs~~e 625 (799)
T 1vsy_4 554 --KIFNYFASLLNRNFWSNDS-FKEKD-PNYELVTIPLAALVRRNNG-L---SKELVRTLLFHIKEQIKRGAGSVRSTSE 625 (799)
T ss_dssp --HHHHHHHHHHHHHHHSCSC-CCSSS-CCTHHHHHHHHHHHHHCGG-G---HHHHHHHHHHHHHHHHHTTTTCSCCSSS
T ss_pred --HHHHHHHHHHHHHHHHhhh-hhHHH-HHHHHHHHHHHHHHHhCHH-H---HHHHHHHHHHHHHHHHhccccccccccc
Confidence 3455555555554433221 11111 12222 5666666665 2 5566677776666555443 1111
Q ss_pred h-HHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHHHHHc
Q 006201 569 D-EREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFA 618 (657)
Q Consensus 569 ~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~ 618 (657)
. ..+ ..+. --+..++.+++.-|.. +.+|-+.+++.+-.++.
T Consensus 626 ~~~~D--~~L~-w~l~iL~~~v~~~g~~------lL~y~deL~~il~~~~~ 667 (799)
T 1vsy_4 626 IQQRD--VKLV-LYLTALNDVLRNCHES------LLEYSDELITFMKYLYD 667 (799)
T ss_dssp CCTTT--HHHH-HHHHHHHHHHTTTGGG------GGTTHHHHHHHHHHHHH
T ss_pred cCcch--HHHH-HHHHHHHHHHhcCcHH------HHccHHHHHHHHHHHHH
Confidence 0 011 0122 3567777888877877 88999998888777764
No 109
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.64 E-value=0.0006 Score=62.69 Aligned_cols=186 Identities=17% Similarity=0.168 Sum_probs=117.9
Q ss_pred HhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHH
Q 006201 99 KTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTA 178 (657)
Q Consensus 99 ~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~ 178 (657)
..+.++++.||..++..+ | ++ .+...++++++.+|..+... +++ +.
T Consensus 57 ~ll~d~~~~VR~~AA~~l--------~----~~---~l~~L~~D~~~~VR~~aA~~-------L~~------------~~ 102 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS--------P----VE---ALTPLIRDSDEVVRRAVAYR-------LPR------------EQ 102 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS--------C----GG---GGGGGTTCSSHHHHHHHHTT-------SCS------------GG
T ss_pred HHhcCCCHHHHHHHHHhC--------C----HH---HHHHHccCcCHHHHHHHHHH-------CCH------------HH
Confidence 345778899999988853 2 12 25666788899999887753 211 12
Q ss_pred HHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhH
Q 006201 179 VVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYI 258 (657)
Q Consensus 179 l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 258 (657)
+...++ |+++.||..+...+ + . ..+..+++++++.||..+...+. +
T Consensus 103 L~~ll~--D~d~~VR~~aA~~l-------~----~--------~~L~~L~~D~d~~VR~~aA~~l~------~------- 148 (244)
T 1lrv_A 103 LSALMF--DEDREVRITVADRL-------P----L--------EQLEQMAADRDYLVRAYVVQRIP------P------- 148 (244)
T ss_dssp GGGTTT--CSCHHHHHHHHHHS-------C----T--------GGGGGGTTCSSHHHHHHHHHHSC------G-------
T ss_pred HHHHHc--CCCHHHHHHHHHhC-------C----H--------HHHHHHHcCCCHHHHHHHHHhcC------H-------
Confidence 345556 89999998887742 1 0 12345568899999988876321 1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCcccc
Q 006201 259 QDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQ 338 (657)
Q Consensus 259 ~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~ 338 (657)
+.+....+|.++.||..+... +.. .++.. +.
T Consensus 149 ----~~l~~l~~D~d~~VR~~aa~~---l~~------------------------------~ll~~----ll-------- 179 (244)
T 1lrv_A 149 ----GRLFRFMRDEDRQVRKLVAKR---LPE------------------------------ESLGL----MT-------- 179 (244)
T ss_dssp ----GGGGGTTTCSCHHHHHHHHHH---SCG------------------------------GGGGG----ST--------
T ss_pred ----HHHHHHHcCCCHHHHHHHHHc---CCH------------------------------HHHHH----HH--------
Confidence 112234667888888877742 110 01111 11
Q ss_pred CCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHh
Q 006201 339 DEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTAL 418 (657)
Q Consensus 339 d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l 418 (657)
.|.+|.+|..+...+ + .+.+...+.|++|.+|.++...++ ...+..|
T Consensus 180 ~D~d~~VR~aaa~~l-------~-------~~~L~~Ll~D~d~~VR~~aa~~l~-------------------~~~L~~L 226 (244)
T 1lrv_A 180 QDPEPEVRRIVASRL-------R-------GDDLLELLHDPDWTVRLAAVEHAS-------------------LEALREL 226 (244)
T ss_dssp TCSSHHHHHHHHHHC-------C-------GGGGGGGGGCSSHHHHHHHHHHSC-------------------HHHHHHC
T ss_pred cCCCHHHHHHHHHhC-------C-------HHHHHHHHcCCCHHHHHHHHHcCC-------------------HHHHHHc
Confidence 123489998777642 1 134556678999999999988754 1244568
Q ss_pred cCCCcHHHHHHHHHHHH
Q 006201 419 MQDPNNHVKDTTAWTLG 435 (657)
Q Consensus 419 ~~d~~~~vr~~a~~~l~ 435 (657)
+|+++.||.++...||
T Consensus 227 -~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 227 -DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp -CCCCHHHHHHHHCCC-
T ss_pred -cCCCHHHHHHHHHHhC
Confidence 9999999999876554
No 110
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.62 E-value=0.19 Score=44.85 Aligned_cols=169 Identities=12% Similarity=0.097 Sum_probs=110.5
Q ss_pred ChhHHHHHHHHhcCCC---hHHHHHHHHHHHHHHhcCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHH
Q 006201 1 MSAEVTQILLNAQSVD---GTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFE 77 (657)
Q Consensus 1 ~~~~l~~~l~~~~s~d---~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~ 77 (657)
|++-+.++++.+..-. .++-+.|...+..+. .+.+..+...|.+ +...++|.+|+-+|... ..
T Consensus 35 ~~~~~~~~~~~~~~~~~gf~~~~~~a~~~~~~~~----~~~~~~la~~L~~-~~~deVR~~Av~lLg~~-~~-------- 100 (240)
T 3l9t_A 35 MKQYVARLEKDFSLIEHGFKEEEQRALTDYKSND----GEYIKKLAFLAYQ-SDVYQVRMYAVFLFGYL-SK-------- 100 (240)
T ss_dssp HHHHHHHHHHHHTC-----CHHHHHHHHHHHHSC----HHHHHHHHHHHHT-CSSHHHHHHHHHHHHHT-TT--------
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhCC----HHHHHHHHHHHHh-CcchHHHHHHHHHHHhc-cC--------
Confidence 4444556666665432 244444444444332 3555667777776 35689999999887764 20
Q ss_pred hhhhcccCChHHHHHHHHHHHH-hcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHH
Q 006201 78 LVQRWLSLDSSVKAQIKSFILK-TLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLG 156 (657)
Q Consensus 78 ~~~~~~~l~~~~~~~i~~~ll~-~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~ 156 (657)
.++ +.+.+.. .-.+++-.||..++.+++.++....|+ ..++.+...+.+++..+|..+...+.
T Consensus 101 --------~~~----~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe----~~l~~~~~W~~d~n~~VRR~Ase~~r 164 (240)
T 3l9t_A 101 --------DKE----ILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK----KALPIIDEWLKSSNLHTRRAATEGLR 164 (240)
T ss_dssp --------SHH----HHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT----TTHHHHHHHHHCSSHHHHHHHHHHTC
T ss_pred --------cHH----HHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH----HHHHHHHHHhcCCCHHHHHHHHHhhH
Confidence 122 2333334 334567899999999999999744452 37788889999999999999988775
Q ss_pred HHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHh
Q 006201 157 YICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALG 205 (657)
Q Consensus 157 ~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 205 (657)
-.+.. +. + ......++|.+..... |++.-||++.-..|..+..
T Consensus 165 pW~~~--~~-~-k~dp~~ll~iL~~L~~--D~s~yVrKSVan~LrD~SK 207 (240)
T 3l9t_A 165 IWTNR--PY-F-KENPNEAIRRIADLKE--DVSEYVRKSVGNALRDISK 207 (240)
T ss_dssp SGGGS--TT-T-TTCHHHHHHHHHTTTT--CSCHHHHHHHHHHHHHHHT
T ss_pred HHhcc--ch-h-hcCHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHhh
Confidence 43321 11 2 3445667777777666 8999999988888888543
No 111
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=96.55 E-value=0.0053 Score=66.61 Aligned_cols=155 Identities=12% Similarity=0.100 Sum_probs=90.1
Q ss_pred chHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHH-HHHHHHH-HHHhcCCCcHHHHHHHHHHHHHHHhhhccC
Q 006201 367 LVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFM-LTALMQDPNNHVKDTTAWTLGRMFEFLHGS 444 (657)
Q Consensus 367 ~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~-~~i~~~l-~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~ 444 (657)
.+.|++. .++++++..|..|+.+|+.+++.. ....-.+ ..++..+ ...+ .|++..||.+|+++|+.++...+.
T Consensus 35 ~i~Pll~-~L~S~~~~~r~~A~~al~~l~~~~--~~~~l~~~~~~v~~ll~~lL-~D~~~~Vr~~A~gaLrnL~~~~g~- 109 (684)
T 4gmo_A 35 KILPVLK-DLKSPDAKSRTTAAGAIANIVQDA--KCRKLLLREQVVHIVLTETL-TDNNIDSRAAGWEILKVLAQEEEA- 109 (684)
T ss_dssp TTHHHHH-HHSSSCCSHHHHHHHHHHHHTTSH--HHHHHHHHTTHHHHHHHTTT-TCSCHHHHHHHHHHHHHHHHHSCH-
T ss_pred hHHHHHH-HcCCCCHHHHHHHHHHHHHHHcCc--HHHHHHHHcCCHHHHHHHHc-CCCCHHHHHHHHHHHHHHHhhcCc-
Confidence 3556664 478899999999999999999742 2222222 2355544 4567 999999999999999999876421
Q ss_pred cCCCccCCcc-cHHHHHHHHHHHccc---------------c-------hHHHHHHHHHHHHHHhhccCCCCCCCCCchh
Q 006201 445 TLETPIINQG-NCQQIISVLLQSMKD---------------V-------PNVAEKACGALYFLAQGFEDAISPSSPLTPF 501 (657)
Q Consensus 445 ~~~~~~~~~~-~~~~il~~l~~~l~d---------------~-------~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~ 501 (657)
..... +-..+++.|...+.. . ..+...++.+|..+++.-. ..+...
T Consensus 110 -----d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~------~~~~~v 178 (684)
T 4gmo_A 110 -----DFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARD------EIHEAV 178 (684)
T ss_dssp -----HHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCH------HHHHHH
T ss_pred -----hHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHHHH
Confidence 01111 112355555544421 0 1233456667777775421 111111
Q ss_pred H-HHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHh
Q 006201 502 F-QEIVQALLTVTHREDAGESRLRTAAYETLNEVVRC 537 (657)
Q Consensus 502 ~-~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~ 537 (657)
. ...++.|+..+.+.+....+++..++++|..+.+.
T Consensus 179 ~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~d 215 (684)
T 4gmo_A 179 ATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSED 215 (684)
T ss_dssp HTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTT
T ss_pred HhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcc
Confidence 1 23455555555333321356777888888887664
No 112
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=96.45 E-value=0.045 Score=47.58 Aligned_cols=128 Identities=15% Similarity=0.207 Sum_probs=91.7
Q ss_pred HHHHHHHhhcC-CCchhchHHHHHhhhcC--cchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcC-C-CcHH
Q 006201 351 TCLGLVARTVG-DDIVPLVMPFVEENITK--QEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQ-D-PNNH 425 (657)
Q Consensus 351 ~~L~~l~~~~~-~~~~~~l~~~l~~~l~~--~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~-d-~~~~ 425 (657)
.+|..+....| ...+|.++.++.+.+.. .++..-...+....++.+.. .-.+++|+.+++|.++.++.. . ....
T Consensus 27 ~aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~-~l~lepYlH~LipsvLtCll~k~l~~~~ 105 (196)
T 4atg_A 27 IAIECLEKESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNK-HVFIDPYLHQILPSLLTCVIGKSIVDDD 105 (196)
T ss_dssp HHHHHHHHCSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCT-TCCCGGGHHHHHHHHHHHHHCTTCCCHH
T ss_pred HHHHHHhcCCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCC-CCChHHHHHHHHHHHHHHHHhcccCHHH
Confidence 55666666665 46788888887765543 25666666677778888875 357899999999999987622 1 1127
Q ss_pred HHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc---chHHHHHHHHHHHHHHh
Q 006201 426 VKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD---VPNVAEKACGALYFLAQ 486 (657)
Q Consensus 426 vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d---~~~v~~~a~~al~~l~~ 486 (657)
+|.-|..+++.++..+.+ .....-+.++..+.+.+.| +....-.|...|..+-.
T Consensus 106 LRd~AA~lL~~I~~~~~~-------~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~ 162 (196)
T 4atg_A 106 VRKMSADIVKYIYDTYSR-------SYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK 162 (196)
T ss_dssp HHHHHHHHHHHHHHHHTT-------TSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHhCc-------cCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH
Confidence 999999999999999863 3355678888899988876 24566667777766543
No 113
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.06 E-value=0.76 Score=42.15 Aligned_cols=165 Identities=13% Similarity=0.161 Sum_probs=111.2
Q ss_pred hHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhc----
Q 006201 87 SSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEV---- 162 (657)
Q Consensus 87 ~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~---- 162 (657)
++...++.+.+++.-.+++..+|+..+.-+...++.. + ..-+..++.|...+.++++.+.+.++.+...+.+..
T Consensus 48 p~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k-~-~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i 125 (257)
T 3gs3_A 48 AELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK-V-ELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYL 125 (257)
T ss_dssp GGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-G-GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777778666777899999999999988765 3 366888888999999999999888888888775543
Q ss_pred --cccc---cc--hhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchh----------hcC-------Ch----
Q 006201 163 --SSDA---VE--QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQA----------NFS-------ND---- 214 (657)
Q Consensus 163 --~~~~---l~--~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~----------~~~-------~~---- 214 (657)
.+.. .+ -..+..+-..+++.+. ..+..+|..++|.+..++..... .+. ++
T Consensus 126 ~~~~~~~~~~~~~W~~m~~lK~~Il~~~~--s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~ 203 (257)
T 3gs3_A 126 CSLMEPGDSAEQAWNILSLIKAQILDMID--NENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRR 203 (257)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHHHHHHGGG--SSCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCH
T ss_pred hcCCCCcchHHHHHHHHHHHHHHHHHHHc--cCCcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCH
Confidence 0110 00 1334555556677766 57899999999999998753211 000 00
Q ss_pred ----hhHHHHHHHHHhhccCC--cHHHHHHHHHHHHHHHHHHHHhhH
Q 006201 215 ----MERDYIMRVVCEATLSP--EVKIRQAAFECLVAISSTYYEKLA 255 (657)
Q Consensus 215 ----~~~~~il~~l~~~~~~~--~~~~~~~~~~~l~~l~~~~~~~~~ 255 (657)
.+...++..++..+..+ +.....+++.+|..+++..|.+..
T Consensus 204 ~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~~~~ 250 (257)
T 3gs3_A 204 EKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPIFMG 250 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCcHHHH
Confidence 11124566666655443 344566888999999988876543
No 114
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=95.94 E-value=0.51 Score=47.00 Aligned_cols=228 Identities=12% Similarity=0.075 Sum_probs=135.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhcC--cccHHHH-H----HHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHH
Q 006201 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQN--LPGFLLS-L----AGELVNDEKPVESRKLAGLILKNALDAKEQHRKFE 77 (657)
Q Consensus 5 l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~--~~~~~~~-L----~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~ 77 (657)
+.+++..+.|+|+..|......|.++-.+- --.|+.. + ...+-. ....+--.-...+++.+++.-
T Consensus 164 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e-~e~~nGIaeLLeilgSIinGf------- 235 (449)
T 2npp_B 164 VLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYE-TEHHNGIAELLEILGSIINGF------- 235 (449)
T ss_dssp HHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHT-CSCCSCHHHHHHHHHHHHSSC-------
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCCCCHHHHHHHHHHHHhcc-------
Confidence 677888888999999999888887765541 0111211 1 111111 111111111233445555421
Q ss_pred hhhhcccCChHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHH
Q 006201 78 LVQRWLSLDSSVKAQIKSFILKTLSSPA-HDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLG 156 (657)
Q Consensus 78 ~~~~~~~l~~~~~~~i~~~ll~~l~~~~-~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~ 156 (657)
-..+.++.+..+...|+.+.+... ...-.+++.|+..+...+ | .--..++..|+..---.+..-...-+.-+.
T Consensus 236 ----a~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKD-p-~L~~~vi~~LLk~WP~tns~KevlFL~ele 309 (449)
T 2npp_B 236 ----ALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD-S-TLTEPVVMALLKYWPKTHSPKEVMFLNELE 309 (449)
T ss_dssp ----CSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHC-G-GGHHHHHHHHHHTCCSSCHHHHHHHHHHHH
T ss_pred ----CCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcC-c-HhHHHHHHHHHHhCCCCCchHHHHHHHHHH
Confidence 123567788777777888777654 556678999998888876 3 122334444444433345544455667777
Q ss_pred HHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHH--HhhchhhcCChhhHHHHHHHHHhhcc----C
Q 006201 157 YICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNA--LGFAQANFSNDMERDYIMRVVCEATL----S 230 (657)
Q Consensus 157 ~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~--~~~~~~~~~~~~~~~~il~~l~~~~~----~ 230 (657)
.+++..++..+ ......++..+..+++ +++..|-..|+....+- +..+.+ ....++++++..+. .
T Consensus 310 eile~~~~~ef-~~i~~~lF~~la~ci~--S~hfqVAErAL~~w~N~~i~~li~~------n~~~IlPii~p~L~~~s~~ 380 (449)
T 2npp_B 310 EILDVIEPSEF-VKIMEPLFRQLAKCVS--SPHFQVAERALYYWNNEYIMSLISD------NAAKILPIMFPSLYRNSKT 380 (449)
T ss_dssp HHHTTCCHHHH-HHHHHHHHHHHHHHHT--CSCHHHHHHHHGGGGCHHHHHHHHT------THHHHHHHHHHHHTSCTTC
T ss_pred HHHHhCCHHHH-HHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHCCHHHHHHHHh------chhhhHHhhHHHHHHHHHH
Confidence 77777766666 5667778888888988 68888888887654431 111111 22456676665442 2
Q ss_pred C-cHHHHHHHHHHHHHHHHHHHHhhH
Q 006201 231 P-EVKIRQAAFECLVAISSTYYEKLA 255 (657)
Q Consensus 231 ~-~~~~~~~~~~~l~~l~~~~~~~~~ 255 (657)
. +..++..+..++..+.+..+..+.
T Consensus 381 HWn~~V~~la~~vlk~l~e~d~~lf~ 406 (449)
T 2npp_B 381 HWNKTIHGLIYNALKLFMEMNQKLFD 406 (449)
T ss_dssp CSSTTHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHCHHHHH
Confidence 2 456888888888887777665543
No 115
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=95.55 E-value=0.67 Score=45.32 Aligned_cols=228 Identities=12% Similarity=0.073 Sum_probs=133.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhcCc--ccHHHH-----HHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHH
Q 006201 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQNL--PGFLLS-----LAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFE 77 (657)
Q Consensus 5 l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~~--~~~~~~-----L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~ 77 (657)
+.+++.-+.|+|+.-|......|.++-.+-. -.|+.. +...+-....-..+- -..-+++.+++.
T Consensus 131 i~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye~e~~~GIa-eLLeilgsIinG-------- 201 (403)
T 3fga_B 131 VLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIA-ELLEILGSIING-------- 201 (403)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCTTHH-HHHHHHHHHHHH--------
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCcccCCCHH-HHHHHHHHHHcc--------
Confidence 6778888889999999998888887544310 112211 111111111001111 112334444431
Q ss_pred hhhhcccCChHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHH
Q 006201 78 LVQRWLSLDSSVKAQIKSFILKTLSSPA-HDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLG 156 (657)
Q Consensus 78 ~~~~~~~l~~~~~~~i~~~ll~~l~~~~-~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~ 156 (657)
.-..+-++.+..+.+.|+.+-+... ...-.+++.|+..+...+ | ..-..++..|+..---.+..-...-+.-+.
T Consensus 202 ---fa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKD-p-~L~~~vi~~LLk~WP~tns~KevlFL~Ele 276 (403)
T 3fga_B 202 ---FALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD-S-TLTEPVVMALLKYWPKTHSPKEVMFLNELE 276 (403)
T ss_dssp ---CCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHC-G-GGHHHHHHHHHHTCCSSCHHHHHHHHHHHH
T ss_pred ---cCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhC-c-hhHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 1123567788777888888777664 556678999999988877 3 123344444444444445555556677777
Q ss_pred HHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHH--HhhchhhcCChhhHHHHHHHHHhhc----cC
Q 006201 157 YICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNA--LGFAQANFSNDMERDYIMRVVCEAT----LS 230 (657)
Q Consensus 157 ~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~--~~~~~~~~~~~~~~~~il~~l~~~~----~~ 230 (657)
.+++..++..+ ......++..+..++. +++..|-.+|+....+- +..+.+ ....+++.++..+ ..
T Consensus 277 ~iLe~~~~~~f-~~i~~~lf~~la~ci~--S~hfqVAErAL~~wnNe~i~~li~~------n~~~IlPii~p~L~~~~~~ 347 (403)
T 3fga_B 277 EILDVIEPSEF-VKIMEPLFRQLAKCVS--SPHFQVAERALYYWNNEYIMSLISD------NAAKILPIMFPSLYRNSKT 347 (403)
T ss_dssp HHHTTCCHHHH-HHHHHHHHHHHHHHHT--CSCHHHHHHHHGGGGCHHHHHHHHT------THHHHHHHHHHHHHHTTSC
T ss_pred HHHHhCCHHHH-HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHhccHHHHHHHHH------hHHHHHHHHHHHHHHHHHH
Confidence 78877755656 5666778888888888 57888888877654331 111111 1234555554433 22
Q ss_pred C-cHHHHHHHHHHHHHHHHHHHHhhH
Q 006201 231 P-EVKIRQAAFECLVAISSTYYEKLA 255 (657)
Q Consensus 231 ~-~~~~~~~~~~~l~~l~~~~~~~~~ 255 (657)
. +..++..++.++..+.+..++.+.
T Consensus 348 HWn~~v~~l~~~vlk~l~e~d~~lF~ 373 (403)
T 3fga_B 348 HWNKTIHGLIYNALKLFMEMNQKLFD 373 (403)
T ss_dssp CSCHHHHHHHHHHHHHHHTTSCCCCC
T ss_pred ccCHHHHHHHHHHHHHHHHhCHHHHH
Confidence 2 567787788888777776655443
No 116
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=95.52 E-value=0.87 Score=41.79 Aligned_cols=115 Identities=11% Similarity=0.123 Sum_probs=80.8
Q ss_pred CCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHH
Q 006201 125 PHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNAL 204 (657)
Q Consensus 125 ~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~ 204 (657)
| ..+|++++.+++...+.+..+|......+...+..- ......+++.+...++ |.++.|.+.++.|..++.
T Consensus 48 p-~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k------~~l~~~~l~~L~~Ll~--d~d~~V~K~~I~~~~~iY 118 (257)
T 3gs3_A 48 A-ELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK------VELLPHVINVVSMLLR--DNSAQVIKRVIQACGSIY 118 (257)
T ss_dssp G-GGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC------GGGHHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHH
T ss_pred H-hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHH
Confidence 5 478999999999888888999999999999888654 2445667777777787 788999999999988876
Q ss_pred hhc----hhhcCC----hhhHHH---HHHHHHhhccCCcHHHHHHHHHHHHHHHH
Q 006201 205 GFA----QANFSN----DMERDY---IMRVVCEATLSPEVKIRQAAFECLVAISS 248 (657)
Q Consensus 205 ~~~----~~~~~~----~~~~~~---il~~l~~~~~~~~~~~~~~~~~~l~~l~~ 248 (657)
... -..... +..|.. +-..++...+..+..+|..+++.+..++-
T Consensus 119 ~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl 173 (257)
T 3gs3_A 119 KNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVV 173 (257)
T ss_dssp HHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence 532 111111 122322 33345555666778888777777776553
No 117
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.28 E-value=2.7 Score=41.86 Aligned_cols=321 Identities=9% Similarity=0.086 Sum_probs=180.0
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhH
Q 006201 176 LTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLA 255 (657)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 255 (657)
+..++.+.+ .+...+..|...+..+..++++ ..+.-++.++.+..+++..+|..+++.|..++..
T Consensus 31 y~~Il~~~k---g~~k~K~LaaQ~I~kffk~FP~------l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------ 95 (507)
T 3u0r_A 31 YQVILDGVK---GGTKEKRLAAQFIPKFFKHFPE------LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ 95 (507)
T ss_dssp HHHHHHGGG---SCHHHHHHHHHHHHHHGGGCGG------GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------
T ss_pred HHHHHHhcC---CCHHHHHHHHHHHHHHHhhChh------hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------
Confidence 455565555 5788999999988887665543 2357788888899999999999999999988764
Q ss_pred HhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCc
Q 006201 256 PYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEED 335 (657)
Q Consensus 256 ~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d 335 (657)
.++..+.+.+.+.++.+++.-...+-..+.++.... -+..+..++..+.+ .+
T Consensus 96 ~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~D----------------------pk~tl~~lf~~i~~----~~-- 147 (507)
T 3u0r_A 96 ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMD----------------------AKGTLGGLFSQILQ----GE-- 147 (507)
T ss_dssp TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC----------------------HHHHHHHHHHHHHH----SC--
T ss_pred hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcC----------------------hHHHHHHHHHHHcc----cc--
Confidence 456778888888888666543333333333333321 11222222222221 11
Q ss_pred cccCCCcchHhhhHHHHHHHHHhhc---CCCch-----hchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHH
Q 006201 336 QDQDEGAWNIAMAGGTCLGLVARTV---GDDIV-----PLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV 407 (657)
Q Consensus 336 ~~~d~~~~~~r~~a~~~L~~l~~~~---~~~~~-----~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~ 407 (657)
+ .+|. .+|.-|...+ +...+ ..+...+...+.+-.-..=.-.+..|+++-- .+.. .-.
T Consensus 148 ----e---~~Re---r~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl---~~t~-~g~ 213 (507)
T 3u0r_A 148 ----D---IVRE---RAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKS---LQTV-SGR 213 (507)
T ss_dssp ----H---HHHH---HHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGG---GSSH-HHH
T ss_pred ----h---HHHH---HHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhccc---ccCc-hHH
Confidence 1 4554 4555554433 33322 2344445555554432221212222222111 1111 223
Q ss_pred HHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-ch-----HHHHH
Q 006201 408 NIALNFMLTALM-----QDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VP-----NVAEK 476 (657)
Q Consensus 408 ~~i~~~l~~~l~-----~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~-----~v~~~ 476 (657)
.++++.+..... .-.++..-...+.|+.+-..++.. ......++.-+...++..+++ .. ..+..
T Consensus 214 qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~-----~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~ 288 (507)
T 3u0r_A 214 QQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSK-----NVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLE 288 (507)
T ss_dssp HHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBT-----TBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHH
T ss_pred HHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhcc-----CCChHHHHHHHHHhhccchhhccccccchHHHHH
Confidence 455666555420 112344445555666555554431 113456666666666666664 22 36778
Q ss_pred HHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccch--------------hhhHHHHHHHHHHHHHHhccccc
Q 006201 477 ACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAG--------------ESRLRTAAYETLNEVVRCSTDET 542 (657)
Q Consensus 477 a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~--------------~~~~~~~~~~al~~l~~~~~~~~ 542 (657)
-..+++.++..+++ .......++.++..|+..+...... +....+.++-++-.+++..++.+
T Consensus 289 LLK~lAE~s~~~~~----~e~a~~~l~~iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~~l 364 (507)
T 3u0r_A 289 VLKLLAEMSSFCGD----MEKLETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPDFL 364 (507)
T ss_dssp HHHHHHHHHTTCCC----CTTHHHHHHHHHHHHHTTSCCCC--------------CCCHHHHHHHHHHHHHHHTTCTHHH
T ss_pred HHHHHHHHccCCCc----cchHHHHHHHHHHHHHHHCCCCcccccccccccccCcccchhHHHHHHHHHHHHhhhChhhh
Confidence 88888888877542 2445568888888888887543320 11233566677777777665311
Q ss_pred ---------------HHHHHHHHHHHHHHHHHHHh
Q 006201 543 ---------------APMVMQLVPLIMMELHQTLE 562 (657)
Q Consensus 543 ---------------~~~~~~l~~~l~~~l~~~~~ 562 (657)
..|+....+..++.|.+.+.
T Consensus 365 ~e~~~~~~lkdfr~RLqy~ar~~q~yikkL~~~~~ 399 (507)
T 3u0r_A 365 TAKLNAEKLKDFKIRLQYFARGLQVYIRQLRLALQ 399 (507)
T ss_dssp HCC--CCTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 24777777777777777664
No 118
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=95.26 E-value=0.13 Score=48.58 Aligned_cols=150 Identities=11% Similarity=0.043 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHH-hhccccchhhhHHH-HHHHHHHHHHHhcccccHHHHHHH
Q 006201 472 NVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLT-VTHREDAGESRLRT-AAYETLNEVVRCSTDETAPMVMQL 549 (657)
Q Consensus 472 ~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~-~l~~~~~~~~~~~~-~~~~al~~l~~~~~~~~~~~~~~l 549 (657)
.++......+.++++.. .+.......+++.|+. ++.++..+.+..|+ +++.++++++...++...|+++.+
T Consensus 44 ~vKkeiLkLiet~i~~~-------~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~I 116 (321)
T 1w9c_A 44 TVKRETLKLISGWVSRS-------NDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQI 116 (321)
T ss_dssp HHHHHHHHHHHHHHTTC-------SCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 34455566666666542 2333445666666654 34443322233332 789999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhh----HHHHHHHHHHHHHHcccCCcch
Q 006201 550 VPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFM----QYADQMMGLFLRVFAIRSATAH 625 (657)
Q Consensus 550 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~----~~~~~i~~~l~~~l~~~~~~v~ 625 (657)
+..+++..-+.+... -+..++.|......+..+...+=.. +. +....+++.+++..+...+++-
T Consensus 117 l~~VFe~TL~MI~~d------f~eyPehR~~Ff~LL~ai~~~cF~a------l~~lp~~~fklvidsiiWa~kH~~r~V~ 184 (321)
T 1w9c_A 117 FDAVFECTLNMINKD------FEEYPEHRTNFFLLLQAVNSHCFPA------FLAIPPTQFKLVLDSIIWAFKHTMRNVA 184 (321)
T ss_dssp HHHHHHHHHHHHSST------TTCSHHHHHHHHHHHHHHHHHCTTH------HHHSCHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHhcc------cccChHHHHHHHHHHHHHHHHhHHH------HHcCCHHHHHHHHHHHHHHcCCCCchHH
Confidence 999888777666421 1111244555666666666543222 11 3567788999999998888899
Q ss_pred hhHHHHHHHHHHHhc
Q 006201 626 EEAMLAIGALAYATG 640 (657)
Q Consensus 626 ~~~~~~l~~l~~~~g 640 (657)
+.++.++-.+...++
T Consensus 185 e~gL~il~~ll~n~~ 199 (321)
T 1w9c_A 185 DTGLQILFTLLQNVA 199 (321)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999998888887664
No 119
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=95.13 E-value=1.5 Score=42.81 Aligned_cols=161 Identities=11% Similarity=0.054 Sum_probs=109.0
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhc------ccc
Q 006201 92 QIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEV------SSD 165 (657)
Q Consensus 92 ~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~------~~~ 165 (657)
++.+.+++.-.+++..+|+..+..|+..+... + ...+.+++.|...+.++++.+...++.+...+.... .+.
T Consensus 63 ~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~-~-el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~ 140 (386)
T 3o2t_A 63 NFLDEIIAFQADKSIEVRKFVIGFIEEACKRD-I-ELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRV 140 (386)
T ss_dssp GGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-G-GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-C
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34556777777888999999999999998865 3 245888899999999999988888888887775432 011
Q ss_pred ------ccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhh-------------cC-------C------
Q 006201 166 ------AVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQAN-------------FS-------N------ 213 (657)
Q Consensus 166 ------~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~-------------~~-------~------ 213 (657)
.. -..+..+-..++..+. ..+..||..++|.+..++...... +. +
T Consensus 141 ~~~~~e~~-W~~m~~lK~~Il~~~d--s~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~ 217 (386)
T 3o2t_A 141 ISELQEAC-WDMVSAMAGDIILLLD--SDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYN 217 (386)
T ss_dssp CCHHHHHH-HHHHHHHHHHHHHGGG--CSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHH
T ss_pred cchhHHHH-HHHHHHHHHHHHHHhc--cCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHH
Confidence 11 2344555666677665 578999999999999988532210 00 0
Q ss_pred --hhhHHHHHHHHHhhccC--CcHHHHHHHHHHHHHHHHHHHHhhHHh
Q 006201 214 --DMERDYIMRVVCEATLS--PEVKIRQAAFECLVAISSTYYEKLAPY 257 (657)
Q Consensus 214 --~~~~~~il~~l~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~ 257 (657)
+.+...++..++..+.. -+.-...+++.+|..+++..|.+....
T Consensus 218 ~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~rI 265 (386)
T 3o2t_A 218 VLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEV 265 (386)
T ss_dssp HHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHHH
Confidence 01112466677776654 234455678899999998887665433
No 120
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=94.69 E-value=0.012 Score=54.09 Aligned_cols=203 Identities=13% Similarity=0.120 Sum_probs=124.4
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHHHHHHhcC
Q 006201 23 AEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLS 102 (657)
Q Consensus 23 A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~ 102 (657)
....+.+|...+ |+.+. .++. +.++.+|..|+..+. + ..+...+.
T Consensus 40 ~~~ri~~~~~~~-p~l~~---~ll~--d~~~~VR~~AA~~l~----------------------~-------~~l~~L~~ 84 (244)
T 1lrv_A 40 SGRQIDRFFRNN-PHLAV---QYLA--DPFWERRAIAVRYSP----------------------V-------EALTPLIR 84 (244)
T ss_dssp CHHHHHHHHHHC-GGGGG---GGTT--CSSHHHHHHHHTTSC----------------------G-------GGGGGGTT
T ss_pred cHHHHHHHHcCC-HHHHH---HHhc--CCCHHHHHHHHHhCC----------------------H-------HHHHHHcc
Confidence 344555555543 33322 2233 458999998886431 0 01445677
Q ss_pred CCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhc
Q 006201 103 SPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQG 182 (657)
Q Consensus 103 ~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~ 182 (657)
++++.||..++..+ +. +.+...++++++.+|..+..-+ .++ .+...
T Consensus 85 D~~~~VR~~aA~~L--------~~-------~~L~~ll~D~d~~VR~~aA~~l-------~~~------------~L~~L 130 (244)
T 1lrv_A 85 DSDEVVRRAVAYRL--------PR-------EQLSALMFDEDREVRITVADRL-------PLE------------QLEQM 130 (244)
T ss_dssp CSSHHHHHHHHTTS--------CS-------GGGGGTTTCSCHHHHHHHHHHS-------CTG------------GGGGG
T ss_pred CcCHHHHHHHHHHC--------CH-------HHHHHHHcCCCHHHHHHHHHhC-------CHH------------HHHHH
Confidence 88999999998642 31 3466778899999998877632 111 12333
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Q 006201 183 MNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIF 262 (657)
Q Consensus 183 l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~ 262 (657)
++ |+++.||..+...+ . . +.+..+++++++.||..+...+. .
T Consensus 131 ~~--D~d~~VR~~aA~~l-------~----~--------~~l~~l~~D~d~~VR~~aa~~l~------~----------- 172 (244)
T 1lrv_A 131 AA--DRDYLVRAYVVQRI-------P----P--------GRLFRFMRDEDRQVRKLVAKRLP------E----------- 172 (244)
T ss_dssp TT--CSSHHHHHHHHHHS-------C----G--------GGGGGTTTCSCHHHHHHHHHHSC------G-----------
T ss_pred Hc--CCCHHHHHHHHHhc-------C----H--------HHHHHHHcCCCHHHHHHHHHcCC------H-----------
Confidence 45 89999999887731 1 0 12345678899999998877521 0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCc
Q 006201 263 NITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGA 342 (657)
Q Consensus 263 ~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~ 342 (657)
+.+....+|.++.||..++..+ .. + .+... +. |.+
T Consensus 173 ~ll~~ll~D~d~~VR~aaa~~l---~~--------------------------~---~L~~L----l~---------D~d 207 (244)
T 1lrv_A 173 ESLGLMTQDPEPEVRRIVASRL---RG--------------------------D---DLLEL----LH---------DPD 207 (244)
T ss_dssp GGGGGSTTCSSHHHHHHHHHHC---CG--------------------------G---GGGGG----GG---------CSS
T ss_pred HHHHHHHcCCCHHHHHHHHHhC---CH--------------------------H---HHHHH----Hc---------CCC
Confidence 1222456788999999888531 10 0 00111 11 234
Q ss_pred chHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHH
Q 006201 343 WNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFG 392 (657)
Q Consensus 343 ~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~ 392 (657)
|.+|..+...++ .+.+... .|++|.+|+++...||
T Consensus 208 ~~VR~~aa~~l~--------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 208 WTVRLAAVEHAS--------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp HHHHHHHHHHSC--------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred HHHHHHHHHcCC--------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 999998877653 2556555 8999999999976554
No 121
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=94.33 E-value=2.6 Score=41.09 Aligned_cols=114 Identities=10% Similarity=0.065 Sum_probs=79.1
Q ss_pred CCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHH
Q 006201 125 PHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNAL 204 (657)
Q Consensus 125 ~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~ 204 (657)
| ...+++++.+++...+.+..+|..+...+...+..- .+....+++.+...++ |.++.|.+.++.|..++.
T Consensus 58 p-sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~------~el~~~~l~~L~~LL~--d~d~~V~K~~I~~~tslY 128 (386)
T 3o2t_A 58 P-TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD------IELLLKLIANLNMLLR--DENVNVVKKAILTMTQLY 128 (386)
T ss_dssp G-GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC------GGGHHHHHHHHHHHHT--CSSHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHH
Confidence 5 478999999999999999999999999999888753 2445677777777777 788999999999988876
Q ss_pred hh----chhhcCC----hhhHH---HHHHHHHhhccCCcHHHHHHHHHHHHHHH
Q 006201 205 GF----AQANFSN----DMERD---YIMRVVCEATLSPEVKIRQAAFECLVAIS 247 (657)
Q Consensus 205 ~~----~~~~~~~----~~~~~---~il~~l~~~~~~~~~~~~~~~~~~l~~l~ 247 (657)
.. +-..... +..|. .+-..++...+..+..+|..+++.+..++
T Consensus 129 pl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 129 KVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 42 1111111 12232 23334455556667777777776666654
No 122
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=94.00 E-value=2.8 Score=36.37 Aligned_cols=85 Identities=9% Similarity=0.189 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhH
Q 006201 522 RLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYV 601 (657)
Q Consensus 522 ~~~~~~~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 601 (657)
......+....+++..-.-...||+.+++|.++..+-.. ..+.. .+|..+...++.+++..|..
T Consensus 61 ~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k----~l~~~------~LRd~AA~lL~~I~~~~~~~------ 124 (196)
T 4atg_A 61 EVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGK----SIVDD------DVRKMSADIVKYIYDTYSRS------ 124 (196)
T ss_dssp HHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCT----TCCCH------HHHHHHHHHHHHHHHHHTTT------
T ss_pred HHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhc----ccCHH------HHHHHHHHHHHHHHHHhCcc------
Confidence 334467777777777766678899999999998876421 11221 58889999999999999987
Q ss_pred hhHHHHHHHHHHHHHHcccCC
Q 006201 602 FMQYADQMMGLFLRVFAIRSA 622 (657)
Q Consensus 602 ~~~~~~~i~~~l~~~l~~~~~ 622 (657)
....-+.++..+.+.+.+++.
T Consensus 125 y~~L~~RI~~tl~k~l~dp~~ 145 (196)
T 4atg_A 125 YKTLAPRVLKTLKGVWMDPNR 145 (196)
T ss_dssp STTHHHHHHHHHHHHHTCTTS
T ss_pred CchHHHHHHHHHHHHHcCCCC
Confidence 666778899999999987543
No 123
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=91.67 E-value=9.4 Score=43.40 Aligned_cols=128 Identities=13% Similarity=0.049 Sum_probs=78.3
Q ss_pred HHHhcCC----CChHHHHHHHHHHHHHHhhhcCC-CC-----CchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccc
Q 006201 97 ILKTLSS----PAHDARSTASQVVAKVAGIELPH-KQ-----WPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDA 166 (657)
Q Consensus 97 ll~~l~~----~~~~vr~~aa~~l~~i~~~~~~~-~~-----~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~ 166 (657)
+...+.+ .++.+|..+..+++.++...... .. -+.+...+.+.+...+...+..++++|+.+.. +.
T Consensus 396 ~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~---p~- 471 (1056)
T 1lsh_A 396 ARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ---PN- 471 (1056)
T ss_dssp HHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC---GG-
T ss_pred HHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC---hh-
Confidence 4444444 35789999999999999876431 11 34455555566666777777888888887533 11
Q ss_pred cchhhHhHHHHHHHhccC-----CCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhc--cCCcHHHHHHH
Q 006201 167 VEQDHVNKILTAVVQGMN-----ASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEAT--LSPEVKIRQAA 239 (657)
Q Consensus 167 l~~~~~~~l~~~l~~~l~-----~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~--~~~~~~~~~~~ 239 (657)
.++.+...+. ..+....+|.+|+.+|..+....+ ..+-+++.+.. ...+.++|.++
T Consensus 472 --------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p---------~~v~~il~~i~~n~~e~~EvRiaA 534 (1056)
T 1lsh_A 472 --------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP---------RKVQEIVLPIFLNVAIKSELRIRS 534 (1056)
T ss_dssp --------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH---------HHHHHHHHHHHHCTTSCHHHHHHH
T ss_pred --------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch---------HHHHHHHHHHhcCCCCChHHHHHH
Confidence 1233333332 113456799999999888654211 22333344433 34788999998
Q ss_pred HHHHHH
Q 006201 240 FECLVA 245 (657)
Q Consensus 240 ~~~l~~ 245 (657)
+..|-+
T Consensus 535 ~~~Lm~ 540 (1056)
T 1lsh_A 535 CIVFFE 540 (1056)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887754
No 124
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=91.20 E-value=10 Score=35.80 Aligned_cols=139 Identities=13% Similarity=0.182 Sum_probs=86.9
Q ss_pred cCCChhHHH-HHHHHHHHHhhhccccccchhhHhHHHHHH----HhccCCC-CCCHHHHHHHHHHHHHHHhhchhh-cC-
Q 006201 141 HQLPPHTKQ-ATLETLGYICEEVSSDAVEQDHVNKILTAV----VQGMNAS-ESNNDVRLAATRALYNALGFAQAN-FS- 212 (657)
Q Consensus 141 ~~~~~~~~~-~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l----~~~l~~~-~~~~~vr~~al~~l~~~~~~~~~~-~~- 212 (657)
++..+..|+ ..+.++..++... .+.+ .+.+..++..+ +..++.+ +.-|+.|..-.+.+..+..+.-.. +.
T Consensus 83 ~~~vp~aRepeVL~l~~tii~kl-~~~i-~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~l 160 (321)
T 1w9c_A 83 QRNVPAAREPEVLSTMAIIVNKL-GGHI-TAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAI 160 (321)
T ss_dssp HTSCGGGCCTHHHHHHHHHHHHH-GGGG-GGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHS
T ss_pred HhCCcccccHHHHHHHHHHHHHH-HHHh-hhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcC
Confidence 334455554 4577777888777 4555 45555555544 3444432 468899999888888877653222 11
Q ss_pred ChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHH-------hhHHhHHHHHHHHHHHHhcCC--hHHHHHHH
Q 006201 213 NDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYE-------KLAPYIQDIFNITAKAVREDE--EPVALQAI 281 (657)
Q Consensus 213 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~-------~~~~~~~~l~~~~~~~~~~~~--~~v~~~a~ 281 (657)
.+.....+++.+..+.+....++....+.++..+.....+ +...|.-.++..++..++|.+ ...+.++.
T Consensus 161 p~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~~ 238 (321)
T 1w9c_A 161 PPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHAS 238 (321)
T ss_dssp CHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCchhhccHHHHHH
Confidence 2222356788888888889999999999988888776532 233455567777777777633 34444443
No 125
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=91.18 E-value=1.9 Score=49.03 Aligned_cols=156 Identities=11% Similarity=0.142 Sum_probs=98.1
Q ss_pred chHhhhHHHHHHHHHhhc-------CCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHH
Q 006201 343 WNIAMAGGTCLGLVARTV-------GDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFML 415 (657)
Q Consensus 343 ~~~r~~a~~~L~~l~~~~-------~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~ 415 (657)
..+|..+.-+++.+...+ +.+.++.+...+.+.+...+...+..++.+||.+... . .++.+.
T Consensus 409 ~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p---~--------~l~~l~ 477 (1056)
T 1lsh_A 409 PILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP---N--------SIKKIQ 477 (1056)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG---G--------GHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh---h--------HHHHHH
Confidence 356777777777776633 2344666777777777766777788888999988752 2 233444
Q ss_pred HHhc------CCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc---chHHHHHHHHHHHHHHh
Q 006201 416 TALM------QDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD---VPNVAEKACGALYFLAQ 486 (657)
Q Consensus 416 ~~l~------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d---~~~v~~~a~~al~~l~~ 486 (657)
+.+. .+...+||.+|+++|.++....+ ..+-+.+++.+.| ++++|..|+..|..-.
T Consensus 478 ~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p--------------~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~- 542 (1056)
T 1lsh_A 478 RFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP--------------RKVQEIVLPIFLNVAIKSELRIRSCIVFFESK- 542 (1056)
T ss_dssp TTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH--------------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTC-
T ss_pred HhhcCccccccccchHHHHHHHHHHHHhhhhch--------------HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHC-
Confidence 4441 12356899999999988876432 3344555555543 6899999988775321
Q ss_pred hccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhccc
Q 006201 487 GFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD 540 (657)
Q Consensus 487 ~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~ 540 (657)
|- ...++.+...+.... +..++..++..|.++++...+
T Consensus 543 -------------P~-~~~l~~ia~~l~~E~--~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 543 -------------PS-VALVSMVAVRLRREP--NLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp -------------CC-HHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTCCSG
T ss_pred -------------cC-HHHHHHHHHHHhhCc--hHHHHHHHHHHHHHHHhcCCc
Confidence 11 123444555555433 356777777777777777654
No 126
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=91.01 E-value=3.1 Score=40.48 Aligned_cols=180 Identities=13% Similarity=0.055 Sum_probs=103.8
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhcCc--ccHHHH-----HHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHH
Q 006201 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQNL--PGFLLS-----LAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFE 77 (657)
Q Consensus 5 l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~~--~~~~~~-----L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~ 77 (657)
+.+++..+.|+|+..|......|.++-.+-. -.|+.. +...+-. .....--.-...+++.+++..
T Consensus 176 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye-~e~~~GIaeLLeilgsIIngf------- 247 (392)
T 2jak_A 176 VLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYE-TEHHNGIAELLEILGSIINGF------- 247 (392)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTS-SCCCSCHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHhcc-------
Confidence 5678888888999888888888876644310 112211 1112221 111111111233444444321
Q ss_pred hhhhcccCChHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHH
Q 006201 78 LVQRWLSLDSSVKAQIKSFILKTLSSPA-HDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLG 156 (657)
Q Consensus 78 ~~~~~~~l~~~~~~~i~~~ll~~l~~~~-~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~ 156 (657)
-..+.++.+..+.+.|+.+.+... ...-.+++.|+..+...+ | .--..++..|+..---.+..-...-+.-+.
T Consensus 248 ----a~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKD-p-~L~~~vi~~LLk~WP~tns~KevlFL~ele 321 (392)
T 2jak_A 248 ----ALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD-S-TLTEPVVMALLKYWPKTHSPKEVMFLNELE 321 (392)
T ss_dssp ----CSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHC-G-GGHHHHHHHHHHSSCSSCCTTHHHHHHHHH
T ss_pred ----CCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcC-c-hhHHHHHHHHHHhCCCCCchHHHHHHHHHH
Confidence 123567777777777777777654 455668888888888776 3 122233333433322233333344566677
Q ss_pred HHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHH
Q 006201 157 YICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALY 201 (657)
Q Consensus 157 ~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~ 201 (657)
.+++..++..+ ......++..+..++. +++..|-.+|+....
T Consensus 322 eiLe~~~~~~f-~~i~~~lF~~la~ci~--S~hfqVAErAL~~wn 363 (392)
T 2jak_A 322 EILDVIEPSEF-VKIMEPLFRQLAKCVS--SPHFQVAERALYYWN 363 (392)
T ss_dssp HHHHTCCHHHH-HHHHHHHHHHHHHHHT--CSSHHHHHHHHGGGG
T ss_pred HHHHhCCHHHH-HHHHHHHHHHHHHHHc--CCcHHHHHHHHHHhC
Confidence 77777755556 5666777888888888 678888887776543
No 127
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=89.86 E-value=7.4 Score=35.13 Aligned_cols=212 Identities=16% Similarity=0.175 Sum_probs=109.4
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCcccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhhHHHhhhhc
Q 006201 3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRW 82 (657)
Q Consensus 3 ~~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~ 82 (657)
+++.|++..+.+|+ .|..|-..|.+-.+ +.++....|+.-... -+.+|...+..+..- .-
T Consensus 3 ~~i~qli~~L~~p~--~Re~AL~eLsk~Re-~~~~La~~LW~S~Gt----------ia~LLQEIisiYp~l-------sp 62 (268)
T 2fv2_A 3 EKIYQWINELSSPE--TRENALLELSKKRE-SVPDLAPMLWHSFGT----------IAALLQEIVNIYPSI-------NP 62 (268)
T ss_dssp HHHHHHHHHTSSTT--THHHHHHHHHHHTT-TCTTHHHHHHHSTTH----------HHHHHHHHHHTGGGB-------TT
T ss_pred HHHHHHHHHhcCch--hHHHHHHHHHHhhh-ccccHHHHHHhccCH----------HHHHHHHHHHHcccC-------CC
Confidence 36788888888765 58888777766444 356666555443331 234555555432110 00
Q ss_pred ccCChHHHHHHHH--HHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCc-hHHHHHHHhhcCC-ChhHHHHHHHHHHHH
Q 006201 83 LSLDSSVKAQIKS--FILKTLSSPAHDARSTASQVVAKVAGIELPHKQWP-ELIGALLSNIHQL-PPHTKQATLETLGYI 158 (657)
Q Consensus 83 ~~l~~~~~~~i~~--~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~-~l~~~l~~~l~~~-~~~~~~~~l~~l~~i 158 (657)
+.++...-..+-+ .+++++.+ .+..|...-. ...| -+.|++....++. -+..|-.++.+++.+
T Consensus 63 p~Lt~~~SnRVcnaLaLlQcvAs-hpetr~~Fl~------------a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaL 129 (268)
T 2fv2_A 63 PTLTAHQSNRVCNALALLQCVAS-HPETRSAFLA------------AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGAL 129 (268)
T ss_dssp BCCCHHHHHHHHHHHHHHHHHHH-CTTTHHHHHH------------TTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHhHHHHHHHHHHHHHc-CcchhhHHHH------------ccchHHhhhhhccccCCCcchhhhhhHHHHHHHH
Confidence 1222222221111 12233321 1122221111 1223 3445544433221 246788999999999
Q ss_pred hhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhch--hhcCChhhH----HHHHH-HHHhhccCC
Q 006201 159 CEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQ--ANFSNDMER----DYIMR-VVCEATLSP 231 (657)
Q Consensus 159 ~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~--~~~~~~~~~----~~il~-~l~~~~~~~ 231 (657)
++.-+++.+..--..+++|.++..+. ..+.--|..|.-++..++..-. ...-....+ ..++. .+....+++
T Consensus 130 vK~dd~eVi~fLL~tEiiplCLrime--~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~p 207 (268)
T 2fv2_A 130 VKTDEQEVINFLLTTEIIPLCLRIME--SGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEP 207 (268)
T ss_dssp GGGCCHHHHHHHHHTTHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSC
T ss_pred hccCcHHHHHHHHhhhHHHHHHHHHh--hccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCC
Confidence 87543333311123568999999888 5667777778877777654210 000010111 12232 223445677
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 006201 232 EVKIRQAAFECLVAISST 249 (657)
Q Consensus 232 ~~~~~~~~~~~l~~l~~~ 249 (657)
++.+.+.++.|..++.++
T Consensus 208 s~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 208 SARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp CHHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHHHHHHHHHhcC
Confidence 888888888888887764
No 128
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=87.46 E-value=36 Score=37.01 Aligned_cols=373 Identities=10% Similarity=0.071 Sum_probs=188.6
Q ss_pred ccCChHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHhh--------------hcCCCCCchHHHHHHHhhcCCChhH
Q 006201 83 LSLDSSVKAQIKSFILKTLSSPA-HDARSTASQVVAKVAGI--------------ELPHKQWPELIGALLSNIHQLPPHT 147 (657)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~~~-~~vr~~aa~~l~~i~~~--------------~~~~~~~~~l~~~l~~~l~~~~~~~ 147 (657)
..++.+.+..+...+.+.+..+. ...+...+.++..+.+. +.. -.|..+...+.+.+-..+...
T Consensus 15 ~~~~~~~~~~Lv~l~Y~l~~~~g~~~~~~~~~~~l~~Ll~~~~~~~~~~~ll~~~dL~-LdWrPLy~~l~~~~~~~~~~~ 93 (799)
T 1vsy_4 15 FDFPVALRKSLATVYYYLSLVQGQKVYRQMHVDMFERLVSLDDDRTQFTELLQKQGLL-LDHQIMLNFLCEFLPYPDPDY 93 (799)
T ss_dssp SCCCHHHHHHHHHHHHHHHTCCSSCCCHHHHHHHHHHHSCSCBTTBCHHHHHHHTTCC-CCHHHHHHHHTTTSCCSSTTT
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCcccccchhhccccccce-eccHHHHHHHHHhCCCcCccc
Confidence 35788888888888888755442 22236667777776543 112 378888877766654332211
Q ss_pred -------HH--HHHHHHHHHhhhccccccc---hhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChh
Q 006201 148 -------KQ--ATLETLGYICEEVSSDAVE---QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDM 215 (657)
Q Consensus 148 -------~~--~~l~~l~~i~~~~~~~~l~---~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~ 215 (657)
++ ..+..+..++... ...+. ....++++..+...+. ++ .+..+++-+..+++.....+.
T Consensus 94 ~~~~~~~~~~~~~~~~l~~l~~~a-r~fF~~~~~~~~~eil~e~~p~l~---p~-----s~~~~~~~l~~fLP~~~~~~~ 164 (799)
T 1vsy_4 94 ARYELSSKEDLQLFRLLLKHAHNA-KPFFDKSKESLLVDTMNFLLSSLA---PS-----TMMAVMPIVTSVVPYHYHIHS 164 (799)
T ss_dssp CCCCTTSTTTHHHHHHHHHHHHHT-STTSCTTCGGGHHHHHHHHGGGCS---TT-----THHHHHHHHHHHSCCCCCSSC
T ss_pred cccccchhhhHHHHHHHHHHHHHH-HHcCCCCCccHHHHHHHHHHHhcC---ch-----hHHHHHHHHHHHcCCCCCchh
Confidence 11 4566777777655 33443 3446777777777665 21 122333333234432222111
Q ss_pred hHHHHHHHHHhhccC--CcHHHHHHHHHHHHHHHHHHH------------Hh--hHHh-------HHHHHHHHHHHHhcC
Q 006201 216 ERDYIMRVVCEATLS--PEVKIRQAAFECLVAISSTYY------------EK--LAPY-------IQDIFNITAKAVRED 272 (657)
Q Consensus 216 ~~~~il~~l~~~~~~--~~~~~~~~~~~~l~~l~~~~~------------~~--~~~~-------~~~l~~~~~~~~~~~ 272 (657)
.....++.++..-+. .+...-...+..++++++... .+ +.+| ++.++..+++.+...
T Consensus 165 ~~~~w~~~~f~lW~~~~~s~~wd~~~~~l~~rla~~~~~~~~~~~~~~~~g~idw~~~gift~~q~~~iFt~~lr~l~~~ 244 (799)
T 1vsy_4 165 KIIDYFPFCYSIWSSVSANVAIDTHMYDFVGSISKDVHNKILSSEHEKDVVGVEFGEFGIFTDDQMTFMFNRLQGHLRTD 244 (799)
T ss_dssp CSGGGHHHHHHHBTTBCSCHHHHHHHHHHHHHHHHHHHHHHSSSCSCTTCCCSCCCSSTTCCHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhHHHHHHHHHhcccCchHHHHHHHHHHHHHHHhhhhhcccccccCCCccchHhhCcccHHHHHHHHHHHHHhccCc
Confidence 112344555544331 234444557778888887643 11 3456 777888777776621
Q ss_pred C--hHHHHHHHHHHHHHhHH----H-------HH-hhhhcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCcc-c
Q 006201 273 E--EPVALQAIEFWSSVCDE----E-------ID-ILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQ-D 337 (657)
Q Consensus 273 ~--~~v~~~a~~~~~~l~~~----~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~-~ 337 (657)
. ......|.-+...+... . .. +...+.|.+.|.+. ..+..++..++....+.+.+..... .
T Consensus 245 ~~~~~~~~~a~~IV~sl~~~~~~~~~~~L~~Li~~iesy~HPSN~G~Wt----~~L~~Fl~~L~~~f~kR~~~Er~~~~~ 320 (799)
T 1vsy_4 245 GQIHSYSRTVKPFVYAINGSKKDRFFEKLVSLAKAIETFIHPSNNGFWT----KPNAKFVHAFIKSYHGRVKYEEDICAR 320 (799)
T ss_dssp CCCSSHHHHHHHHHTTCCTTSCTTTHHHHHHHHHHHHHHHSTTCCSTTH----HHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred CCccchHHHHHHHHHHcCCCCchHHHHHHHHHHHHHhcccCCCCCCccH----HHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 1 11111111111111110 0 00 00112233333321 1122222222222222222111000 0
Q ss_pred cCCCcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHH
Q 006201 338 QDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTA 417 (657)
Q Consensus 338 ~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~ 417 (657)
.-..++ +-..... +.++..+.|.+...+.+.+......+..++..++.-. |..-.-.++.++..+...
T Consensus 321 ~~p~~~---~Lt~~~~--------~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~-P~~~~lVlP~vL~r~y~s 388 (799)
T 1vsy_4 321 GVTNGI---CLTSFCH--------EEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELD-PSNAYLIYDKILIDLYDT 388 (799)
T ss_dssp TCCCSS---SCCHHHH--------HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTC-CTTHHHHHHHHHHHHHHH
T ss_pred CCchhh---cCCHHHH--------HHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcC-CCccceehHHHHHHHHHH
Confidence 000000 0111111 1234556677777777887777788888888888632 433334466667777777
Q ss_pred hcCC---CcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhh
Q 006201 418 LMQD---PNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQG 487 (657)
Q Consensus 418 l~~d---~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~ 487 (657)
| .. .+++-..+++.++..++..+... ..-..++..++..++.++.. ++.--..+...+..++..
T Consensus 389 L-e~~~l~e~Hrl~~aL~~l~~~~r~lv~~-----~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ 456 (799)
T 1vsy_4 389 L-ADQFINSRHRIISSLKQFTRVIRFIVMD-----KLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAF 456 (799)
T ss_dssp H-TTTTTTCHHHHHHHHHHHHTTHHHHTTS-----TTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHT
T ss_pred h-ccccccchhHHHHHHHHHHHHHHHHhcC-----cccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHh
Confidence 7 55 45555567788888888877521 12356888888888888874 454445566666666543
No 129
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=85.22 E-value=26 Score=33.17 Aligned_cols=185 Identities=9% Similarity=0.107 Sum_probs=115.0
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHhhhcCC--------CCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcccccc
Q 006201 96 FILKTLSSPAHDARSTASQVVAKVAGIELPH--------KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAV 167 (657)
Q Consensus 96 ~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~~--------~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l 167 (657)
.|+..|..-+-+-|+.++.+++.+.+..... ...|+++..|+....+++..... -..|...++. +.+
T Consensus 82 ~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~--G~mLRecir~---e~l 156 (341)
T 1upk_A 82 TLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNC--GIMLRECIRH---EPL 156 (341)
T ss_dssp HHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHH--HHHHHHHHTS---HHH
T ss_pred HHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHH--HHHHHHHHHh---HHH
Confidence 3444444445566667777666666643220 13688888888887766543321 1222222221 111
Q ss_pred chhhH--hHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchh---hcCChhhHHHHHHHHHhhccCCcHHHHHHHHHH
Q 006201 168 EQDHV--NKILTAVVQGMNASESNNDVRLAATRALYNALGFAQA---NFSNDMERDYIMRVVCEATLSPEVKIRQAAFEC 242 (657)
Q Consensus 168 ~~~~~--~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~---~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~ 242 (657)
..++ ...+-.+++.+. .++-+|-.-|+.++..++.--+. .|.. .+.+.++.....++++++--.|..+++.
T Consensus 157 -a~~iL~~~~f~~fF~yv~--~~~FdiasDAf~TfkelLt~Hk~lvaefL~-~nyd~Ff~~y~~Ll~S~NYVTkRQSlKL 232 (341)
T 1upk_A 157 -AKIILWSEQFYDFFRYVE--MSTFDIASDAFATFKDLLTRHKLLSAEFLE-QHYDRFFSEYEKLLHSENYVTKRQSLKL 232 (341)
T ss_dssp -HHHHHHSGGGGHHHHHTT--CSSHHHHHHHHHHHHHHHHSSHHHHHHHHH-HTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred -HHHHhccHHHHHHHHHhc--CCCchHHHHHHHHHHHHHhccHHHHHHHHH-HhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 0000 111224445555 57888888888888876542110 1100 1224677777778888999999999999
Q ss_pred HHHHHHH--HHHhhHHhHH--HHHHHHHHHHhcCChHHHHHHHHHHHHHhH
Q 006201 243 LVAISST--YYEKLAPYIQ--DIFNITAKAVREDEEPVALQAIEFWSSVCD 289 (657)
Q Consensus 243 l~~l~~~--~~~~~~~~~~--~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~ 289 (657)
|+++... ....+..|+. .-+..++..+.+....++..|+...-.++.
T Consensus 233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 9999876 4556667763 678888899999999999999988777765
No 130
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=84.21 E-value=29 Score=32.89 Aligned_cols=146 Identities=16% Similarity=0.119 Sum_probs=87.7
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHH-HHhc-Cc------ccHHHHHHHHHhcCCCChhHHHHHHHHHhhhcccchhhh
Q 006201 3 AEVTQILLNAQSVDGTVRKQAEESLKQ-YQEQ-NL------PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHR 74 (657)
Q Consensus 3 ~~l~~~l~~~~s~d~~~r~~A~~~L~~-~~~~-~~------~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~ 74 (657)
.+...++.++.+.+...++.|--.|++ +++. ++ .+-+..|+.++.. .+.+....+...|++++....
T Consensus 118 ~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~--~~gN~q~Y~L~AL~~LM~~v~--- 192 (339)
T 3dad_A 118 VRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAA--ADHNYQSYILRALGQLMLFVD--- 192 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSHH---
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHh--cChHHHHHHHHHHHHHHhccc---
Confidence 356778888888888889999999988 5432 10 2234567777765 388889999999999887532
Q ss_pred HHHhhhhcccCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcC-----------------CCCCchHHHHHH
Q 006201 75 KFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELP-----------------HKQWPELIGALL 137 (657)
Q Consensus 75 ~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~~~-----------------~~~~~~l~~~l~ 137 (657)
.|..+-. .......+...+.+.+..|-+.+-.+|-.++.+... ...|..++..|.
T Consensus 193 ------Gm~gvvs--~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~ 264 (339)
T 3dad_A 193 ------GMLGVVA--HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILE 264 (339)
T ss_dssp ------HHHHHHH--CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHT
T ss_pred ------cccchhC--CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHh
Confidence 2222111 122233455555555566666666666665554310 012555444332
Q ss_pred HhhcCCChhHHHHHHHHHHHHhhhc
Q 006201 138 SNIHQLPPHTKQATLETLGYICEEV 162 (657)
Q Consensus 138 ~~l~~~~~~~~~~~l~~l~~i~~~~ 162 (657)
+. .+.+..++..++..+..++...
T Consensus 265 ~~-~~~D~elq~~amtLIN~lL~~a 288 (339)
T 3dad_A 265 EK-NGADPELLVYTVTLINKTLAAL 288 (339)
T ss_dssp TT-TSCCHHHHHHHHHHHHHHHHHC
T ss_pred cc-CCCCHHHHHHHHHHHHHHHhcC
Confidence 11 2557777777777777776665
No 131
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=84.16 E-value=18 Score=30.68 Aligned_cols=100 Identities=14% Similarity=0.161 Sum_probs=63.7
Q ss_pred hhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcc
Q 006201 375 NITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQG 454 (657)
Q Consensus 375 ~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 454 (657)
.+.++||.. ..-++.++..- .. --...+..|.+.+ ++.++.|+..|+.++..+.+.++... ...-
T Consensus 25 ~l~~~Dw~~----ileicD~I~~~-~~----~~k~A~ral~krl-~~~n~~vql~AL~LLd~~vkNCG~~F-----h~ev 89 (171)
T 1juq_A 25 SNRQEDWEY----IIGFCDQINKE-LE----GPQIAVRLLAHKI-QSPQEWEALQALTVLEACMKNCGRRF-----HNEV 89 (171)
T ss_dssp TCSSCCHHH----HHHHHHHHHHS-TT----HHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHSHHHH-----HHHH
T ss_pred CCCCcCHHH----HHHHHHHHHcC-Cc----cHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHcCHHH-----HHHH
Confidence 445677855 33444444321 11 1245677888899 99999999999999999998875211 0011
Q ss_pred cHHHHHHHHHHHccc-------chHHHHHHHHHHHHHHhhcc
Q 006201 455 NCQQIISVLLQSMKD-------VPNVAEKACGALYFLAQGFE 489 (657)
Q Consensus 455 ~~~~il~~l~~~l~d-------~~~v~~~a~~al~~l~~~~~ 489 (657)
.-..+++.|.+.+.+ +..|+..+...+..-...+.
T Consensus 90 as~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 131 (171)
T 1juq_A 90 GKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALP 131 (171)
T ss_dssp TSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 113445555555541 47899999999988887753
No 132
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=83.10 E-value=36 Score=33.23 Aligned_cols=117 Identities=15% Similarity=0.205 Sum_probs=65.6
Q ss_pred HHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHH-HHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhh
Q 006201 218 DYIMRVVCEATLSPEVKIRQAAFECLVAISSTY-YEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILE 296 (657)
Q Consensus 218 ~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~ 296 (657)
..++..++..--..+..-....+.-+..+++.. +..+......++..+..++.+..-.|...|+.+|..--
T Consensus 250 ~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~-------- 321 (403)
T 3fga_B 250 EPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEY-------- 321 (403)
T ss_dssp HHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHH--------
T ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHH--------
Confidence 345555555443333322223334444444432 34566666778888888888888899999998884411
Q ss_pred hcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcc--hHhhhHHHHHHHHHhhcC
Q 006201 297 EYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAW--NIAMAGGTCLGLVARTVG 361 (657)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~--~~r~~a~~~L~~l~~~~~ 361 (657)
..+.+...-..++|.++..+-..- ..-| ++|..+..++..+.+.-+
T Consensus 322 -------------i~~li~~n~~~IlPii~p~L~~~~------~~HWn~~v~~l~~~vlk~l~e~d~ 369 (403)
T 3fga_B 322 -------------IMSLISDNAAKILPIMFPSLYRNS------KTHWNKTIHGLIYNALKLFMEMNQ 369 (403)
T ss_dssp -------------HHHHHHTTHHHHHHHHHHHHHHTT------SCCSCHHHHHHHHHHHHHHHTTSC
T ss_pred -------------HHHHHHHhHHHHHHHHHHHHHHHH------HHccCHHHHHHHHHHHHHHHHhCH
Confidence 012223333345555555443211 1236 577788888887766543
No 133
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=82.92 E-value=32 Score=32.53 Aligned_cols=150 Identities=11% Similarity=0.108 Sum_probs=86.0
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHhhhccccccchhh-HhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCCh
Q 006201 136 LLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDH-VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSND 214 (657)
Q Consensus 136 l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~-~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~ 214 (657)
+++.+.+.+...+..++.-|..++..- .+.. .+. ...=+..++.... +.+.++...++.+|..++.|....-. -
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D-~~Fa-~EFI~~~GL~~Li~vi~--~~~gN~q~Y~L~AL~~LM~~v~Gm~g-v 197 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQED-KDLV-PEFVHSEGLSCLIRVGA--AADHNYQSYILRALGQLMLFVDGMLG-V 197 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTC-TTHH-HHHHHTTHHHHHHHHHT--TSCHHHHHHHHHHHHHHTTSHHHHHH-H
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcc-hHHH-HHHHHhccHHHHHHHHH--hcChHHHHHHHHHHHHHHhccccccc-h
Confidence 444445556666777777777754321 1111 111 1122344455555 56788999999999999887432100 0
Q ss_pred hhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHH-----------HHHHHHHHHh---cCChHHHHHH
Q 006201 215 MERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQD-----------IFNITAKAVR---EDEEPVALQA 280 (657)
Q Consensus 215 ~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-----------l~~~~~~~~~---~~~~~v~~~a 280 (657)
.....+++-+..++...+..+-+.+++.|..++...+....-.... .+..++..++ ..+.++...+
T Consensus 198 vs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a 277 (339)
T 3dad_A 198 VAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT 277 (339)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred hCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence 0014577777777777788888889999988887653222111111 1223344454 4567777888
Q ss_pred HHHHHHHhHH
Q 006201 281 IEFWSSVCDE 290 (657)
Q Consensus 281 ~~~~~~l~~~ 290 (657)
+..+..+...
T Consensus 278 mtLIN~lL~~ 287 (339)
T 3dad_A 278 VTLINKTLAA 287 (339)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 8776665543
No 134
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=82.88 E-value=40 Score=33.54 Aligned_cols=115 Identities=15% Similarity=0.205 Sum_probs=65.9
Q ss_pred HHHHHHHHhhccCCcHHHHHHHHHHHHHHHHH-HHHhhHHhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHhhh
Q 006201 218 DYIMRVVCEATLSPEVKIRQAAFECLVAISST-YYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILE 296 (657)
Q Consensus 218 ~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~ 296 (657)
..++..++...-..+..-....+.-+..+++. .+..+......++..+..++.+.+-.|...|+.+|..---
T Consensus 283 ~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i------- 355 (449)
T 2npp_B 283 EPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYI------- 355 (449)
T ss_dssp HHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHH-------
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHH-------
Confidence 34556655554322322222233444444433 2345666677788888889999898999999988855210
Q ss_pred hcCCCCCCCCCCchhhHHHhhhhhHHHHHHHHhhhhcCccccCCCcc--hHhhhHHHHHHHHHhh
Q 006201 297 EYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAW--NIAMAGGTCLGLVART 359 (657)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~--~~r~~a~~~L~~l~~~ 359 (657)
...+...-..++|.++..+-..- ..-| ++|..+..++..+.+.
T Consensus 356 --------------~~li~~n~~~IlPii~p~L~~~s------~~HWn~~V~~la~~vlk~l~e~ 400 (449)
T 2npp_B 356 --------------MSLISDNAAKILPIMFPSLYRNS------KTHWNKTIHGLIYNALKLFMEM 400 (449)
T ss_dssp --------------HHHHHTTHHHHHHHHHHHHTSCT------TCCSSTTHHHHHHHHHHHHHTT
T ss_pred --------------HHHHHhchhhhHHhhHHHHHHHH------HHhcCHHHHHHHHHHHHHHHHH
Confidence 12233333445666666543211 1236 5888888888876654
No 135
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=80.61 E-value=24 Score=29.54 Aligned_cols=78 Identities=10% Similarity=0.116 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhH--HHHHHHHHHhhccccchhhhHHHHHHHHHH
Q 006201 456 CQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFF--QEIVQALLTVTHREDAGESRLRTAAYETLN 532 (657)
Q Consensus 456 ~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~--~~i~~~L~~~l~~~~~~~~~~~~~~~~al~ 532 (657)
-...+..|.+.|.. ++.++..|...|..++++|+.. +...+ ..++..|.+++.... +..++..+++.+.
T Consensus 50 ~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~------Fh~evas~~Fl~el~~l~~~~~--~~~Vk~kil~li~ 121 (163)
T 1x5b_A 50 AKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKI------FHLEVCSRDFATEVRAVIKNKA--HPKVCEKLKSLMV 121 (163)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHH------HHHHHTSHHHHHHHHHHHHTTC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH------HHHHHhhHHHHHHHHHHHccCC--CHHHHHHHHHHHH
Confidence 46677788887875 7899999999999999998641 11100 345555555554322 4688888888888
Q ss_pred HHHHhcccc
Q 006201 533 EVVRCSTDE 541 (657)
Q Consensus 533 ~l~~~~~~~ 541 (657)
......+..
T Consensus 122 ~W~~~f~~~ 130 (163)
T 1x5b_A 122 EWSEEFQKD 130 (163)
T ss_dssp HHHHHTTTC
T ss_pred HHHHHhcCC
Confidence 888877654
No 136
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=80.43 E-value=40 Score=31.90 Aligned_cols=151 Identities=11% Similarity=0.109 Sum_probs=99.8
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcccccc-chhh---HhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhh
Q 006201 131 ELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAV-EQDH---VNKILTAVVQGMNASESNNDVRLAATRALYNALGF 206 (657)
Q Consensus 131 ~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l-~~~~---~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~ 206 (657)
+++..|+..+..-+-+.|.-+..++..+.+.-..... ...+ -.+++..++.+... + ++-..+-..|..|+.+
T Consensus 78 dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~--~--diAl~~G~mLRecir~ 153 (341)
T 1upk_A 78 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYES--P--EIALNCGIMLRECIRH 153 (341)
T ss_dssp SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGS--T--TTHHHHHHHHHHHHTS
T ss_pred CHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhcc--c--hhHhHHHHHHHHHHHh
Confidence 6777888888888888999999999988876422211 0112 36677788888773 2 2333333445555432
Q ss_pred ch---hhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHH----hHHHHHHHHHHHHhcCChHHHHH
Q 006201 207 AQ---ANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAP----YIQDIFNITAKAVREDEEPVALQ 279 (657)
Q Consensus 207 ~~---~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~v~~~ 279 (657)
-. -.+.. ..+-.++..++.++.++...++.++..+...+...+.. +...++...-..+.+.+.-.|.+
T Consensus 154 e~la~~iL~~-----~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQ 228 (341)
T 1upk_A 154 EPLAKIILWS-----EQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ 228 (341)
T ss_dssp HHHHHHHHHS-----GGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHHHhcc-----HHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHH
Confidence 10 00001 11223456778899999999999999998776654444 44567777777888888889999
Q ss_pred HHHHHHHHhHH
Q 006201 280 AIEFWSSVCDE 290 (657)
Q Consensus 280 a~~~~~~l~~~ 290 (657)
++.+++.+...
T Consensus 229 SlKLLgelLld 239 (341)
T 1upk_A 229 SLKLLGELLLD 239 (341)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHhC
Confidence 99998887653
No 137
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=76.33 E-value=36 Score=33.11 Aligned_cols=232 Identities=14% Similarity=0.160 Sum_probs=126.6
Q ss_pred CcchhhHHHHHHHHHHhhcCCC--CCcchHHHH-HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcc
Q 006201 378 KQEWRQREAATYAFGSILEGPS--PEKLVPLVN-IALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQG 454 (657)
Q Consensus 378 ~~~~~~r~aal~~l~~i~~~~~--~~~~~~~~~-~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 454 (657)
++.|.--......+..+..... +...+.+++ ..+..++..+ ..++++=|.....++.++...+. ....
T Consensus 140 e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lf-dSeDpRERd~LktiLhrIY~Kf~--------~~R~ 210 (392)
T 2jak_A 140 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELF-DSEDPRERDFLKTTLHRIYGKFL--------GLRA 210 (392)
T ss_dssp CTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHCG--------GGHH
T ss_pred ccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHHH--------HHHH
Confidence 4566665555555555544311 111122222 3556677788 88999999888888877766553 2233
Q ss_pred cHHHHH-HHHHHHccc-c-hHHHHHHHHHHHHHHhhccCCCCCCCCCch-hHHHHHHHHHHhhccccchhhhHHHHHHHH
Q 006201 455 NCQQII-SVLLQSMKD-V-PNVAEKACGALYFLAQGFEDAISPSSPLTP-FFQEIVQALLTVTHREDAGESRLRTAAYET 530 (657)
Q Consensus 455 ~~~~il-~~l~~~l~d-~-~~v~~~a~~al~~l~~~~~~~~~~~~~l~~-~~~~i~~~L~~~l~~~~~~~~~~~~~~~~a 530 (657)
++...+ ..+.+..-+ . ..=.......++.++..+. ..+.+ +..-+...|+.+...... .........+
T Consensus 211 ~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa------~PLKeehk~Fl~~vLlPLhk~~~l--~~y~~qL~yc 282 (392)
T 2jak_A 211 YIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFA------LPLKEEHKIFLLKVLLPLHKVKSL--SVYHPQLAYC 282 (392)
T ss_dssp HHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCC------SSCCHHHHHHHHHTTGGGGTSGGG--GGTHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccC------CCCcHHHHHHHHHHhHhhccCCcH--HHhHHHHHHH
Confidence 443333 333443332 1 1111244556666666542 22332 222233444444443322 1223356677
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHH
Q 006201 531 LNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMM 610 (657)
Q Consensus 531 l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~ 610 (657)
+..+++.-+.... .++..+++.|-. +++ .++ + ..+.-+..+...++... |.....+++
T Consensus 283 v~qf~eKDp~L~~----~vi~~LLk~WP~------tns-~Ke----v--lFL~eleeiLe~~~~~~-----f~~i~~~lF 340 (392)
T 2jak_A 283 VVQFLEKDSTLTE----PVVMALLKYWPK------THS-PKE----V--MFLNELEEILDVIEPSE-----FVKIMEPLF 340 (392)
T ss_dssp HHHHHHHCGGGHH----HHHHHHHHSSCS------SCC-TTH----H--HHHHHHHHHHHTCCHHH-----HHHHHHHHH
T ss_pred HHHHHhcCchhHH----HHHHHHHHhCCC------CCc-hHH----H--HHHHHHHHHHHhCCHHH-----HHHHHHHHH
Confidence 7777776664333 334456666643 111 121 1 25667777777777765 888999999
Q ss_pred HHHHHHHcccCCcchhhHHHHHH-----HHHHHhchhhhhccc
Q 006201 611 GLFLRVFAIRSATAHEEAMLAIG-----ALAYATGLCHHRRCC 648 (657)
Q Consensus 611 ~~l~~~l~~~~~~v~~~~~~~l~-----~l~~~~g~~f~~y~~ 648 (657)
..+-++++..+..|-|.|+..|. .++......+.|.+-
T Consensus 341 ~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~ilPii~ 383 (392)
T 2jak_A 341 RQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMF 383 (392)
T ss_dssp HHHHHHHTCSSHHHHHHHHGGGGCHHHHHHHHHTHHHHTTTSC
T ss_pred HHHHHHHcCCcHHHHHHHHHHhCcHHHHHHHHhhhccchhhhh
Confidence 99999999888888888886653 233333344455443
No 138
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=74.71 E-value=37 Score=28.44 Aligned_cols=75 Identities=15% Similarity=0.136 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCccc-HHHHHHHHHHHccc--chHHHHHHHHHHHHH
Q 006201 408 NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGN-CQQIISVLLQSMKD--VPNVAEKACGALYFL 484 (657)
Q Consensus 408 ~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~-~~~il~~l~~~l~d--~~~v~~~a~~al~~l 484 (657)
...+..|.+.+ ++.++.++..|+.++..+.+.++.. ++.+. -..++..+.+.+.. ++.|+..+...+..-
T Consensus 51 keA~ral~krl-~~~n~~vql~AL~LLd~~vkNcG~~------Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W 123 (163)
T 1x5b_A 51 KDCLKAIMKRV-NHKVPHVALQALTLLGACVANCGKI------FHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEW 123 (163)
T ss_dssp HHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHTCHH------HHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhhHH------HHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 45667888899 9999999999999999999987521 11000 03444444444442 578999998888877
Q ss_pred Hhhcc
Q 006201 485 AQGFE 489 (657)
Q Consensus 485 ~~~~~ 489 (657)
...+.
T Consensus 124 ~~~f~ 128 (163)
T 1x5b_A 124 SEEFQ 128 (163)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 77654
No 139
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=71.53 E-value=39 Score=27.39 Aligned_cols=99 Identities=13% Similarity=0.110 Sum_probs=62.6
Q ss_pred hhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCc-
Q 006201 375 NITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQ- 453 (657)
Q Consensus 375 ~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~- 453 (657)
.+.++||.. ..-++.++..- +. . -...+..+.+.+ ++.++.+...|+.++..+.+.++.. .+.
T Consensus 17 ~l~~~dw~~----ileicD~I~~~-~~--~--~k~a~rai~Krl-~~~n~~~ql~AL~LLe~~vkNcG~~------f~~e 80 (140)
T 3ldz_A 17 MNTAEDWGL----ILDICDKVGQS-RT--G--PKDCLRSIMRRV-NHKDPHVAMQALTLLGACVSNCGKI------FHLE 80 (140)
T ss_dssp TSSSCCHHH----HHHHHHHHTTS-TT--H--HHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHSCHH------HHHH
T ss_pred CCCCcCHHH----HHHHHHHHHCC-Cc--C--HHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHhcCHH------HHHH
Confidence 445677854 44455555431 11 1 245678888899 9999999999999999998887521 110
Q ss_pred ccHHHHHHHHHHHcc-cchHHHHHHHHHHHHHHhhcc
Q 006201 454 GNCQQIISVLLQSMK-DVPNVAEKACGALYFLAQGFE 489 (657)
Q Consensus 454 ~~~~~il~~l~~~l~-d~~~v~~~a~~al~~l~~~~~ 489 (657)
-.-..++..+.+.+. .++.|+......+..-...+.
T Consensus 81 vas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~ 117 (140)
T 3ldz_A 81 VCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK 117 (140)
T ss_dssp HSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhC
Confidence 001333444444443 268899988888887777654
No 140
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=70.41 E-value=42 Score=27.23 Aligned_cols=78 Identities=9% Similarity=0.086 Sum_probs=52.9
Q ss_pred cHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhH--HHHHHHHHHhhccccchhhhHHHHHHHHH
Q 006201 455 NCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFF--QEIVQALLTVTHREDAGESRLRTAAYETL 531 (657)
Q Consensus 455 ~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~--~~i~~~L~~~l~~~~~~~~~~~~~~~~al 531 (657)
.-...+..+.+.|.. ++.++..|...+..++++++.. +...+ ..++..+..++... +..++..+++.+
T Consensus 39 ~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~------f~~evas~~Fl~el~~l~~~~---~~~Vk~kil~li 109 (140)
T 3ldz_A 39 GPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKI------FHLEVCSRDFASEVSNVLNKG---HPKVCEKLKALM 109 (140)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH------HHHHHSSHHHHHHHHHHHHHS---CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHH------HHHHHhhHHHHHHHHHHhccC---CHHHHHHHHHHH
Confidence 346677788888875 7899999999999999998641 11111 33444455555433 467888888888
Q ss_pred HHHHHhcccc
Q 006201 532 NEVVRCSTDE 541 (657)
Q Consensus 532 ~~l~~~~~~~ 541 (657)
.......+..
T Consensus 110 ~~W~~~f~~~ 119 (140)
T 3ldz_A 110 VEWTDEFKND 119 (140)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhCCC
Confidence 8888776653
No 141
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=69.46 E-value=25 Score=28.50 Aligned_cols=34 Identities=9% Similarity=0.157 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHH
Q 006201 257 YIQDIFNITAKAVREDEEPVALQAIEFWSSVCDE 290 (657)
Q Consensus 257 ~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~ 290 (657)
....+++.+++.+++..+.++..|+.++..++..
T Consensus 46 ~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~ 79 (140)
T 1vdy_A 46 IVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGK 79 (140)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHh
Confidence 4578999999999999999999999988888864
No 142
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=65.92 E-value=54 Score=26.85 Aligned_cols=99 Identities=12% Similarity=0.158 Sum_probs=64.6
Q ss_pred hhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcc
Q 006201 375 NITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQG 454 (657)
Q Consensus 375 ~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 454 (657)
.+.++||.. ..-++.++..- + .--...+..+.+.+ +++++.+...|+.++..+.+.++.. ++.+
T Consensus 13 ~l~~~dw~~----~leicD~I~~~-~----~~~k~a~rai~krl-~~~n~~vql~AL~LLe~~vkNCG~~------fh~e 76 (148)
T 1mhq_A 13 SMSEQDWSA----IQNFCEQVNTD-P----NGPTHAPWLLAHKI-QSPQEKEALYALTVLEMCMNHCGEK------FHSE 76 (148)
T ss_dssp TCSSCCHHH----HHHHHHHHHHS-S----HHHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHSCHH------HHHH
T ss_pred CCCCcCHHH----HHHHHHHHHcC-C----ccHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHcCHH------HHHH
Confidence 445677854 33444443321 1 11245677888899 9999999999999999999987621 1111
Q ss_pred -cHHHHHHHHHHHccc-------chHHHHHHHHHHHHHHhhcc
Q 006201 455 -NCQQIISVLLQSMKD-------VPNVAEKACGALYFLAQGFE 489 (657)
Q Consensus 455 -~~~~il~~l~~~l~d-------~~~v~~~a~~al~~l~~~~~ 489 (657)
.-..+++.+.+.+.+ ++.|+..+...+..-...+.
T Consensus 77 vas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (148)
T 1mhq_A 77 VAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFP 119 (148)
T ss_dssp HTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred HhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 124556666666642 46899998888887777653
No 143
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=65.71 E-value=38 Score=27.81 Aligned_cols=77 Identities=10% Similarity=0.088 Sum_probs=53.9
Q ss_pred chHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchh-hHhHHHHHHHhccCC----CCCCHHHHHHHHHHHHHHH
Q 006201 130 PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQD-HVNKILTAVVQGMNA----SESNNDVRLAATRALYNAL 204 (657)
Q Consensus 130 ~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~-~~~~l~~~l~~~l~~----~~~~~~vr~~al~~l~~~~ 204 (657)
.+.+..|...+++.++.+...|+.+|..++..+ +..|... ....++..+...+.. +..+..||..++..+..|.
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNC-G~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHC-GEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHc-CHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 456667777788889999999999999999998 4434111 124455555555542 1257899999999999876
Q ss_pred hhc
Q 006201 205 GFA 207 (657)
Q Consensus 205 ~~~ 207 (657)
..+
T Consensus 116 ~~f 118 (148)
T 1mhq_A 116 VWF 118 (148)
T ss_dssp HHC
T ss_pred HHc
Confidence 543
No 144
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=64.60 E-value=20 Score=31.88 Aligned_cols=89 Identities=9% Similarity=0.059 Sum_probs=54.8
Q ss_pred CcchHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcc-hhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhc
Q 006201 341 GAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQE-WRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALM 419 (657)
Q Consensus 341 ~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~-~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~ 419 (657)
+.|++......+++.+....+. .+.+.+.....|++ |..|.|....+.-.- ..+...+++.+...+
T Consensus 102 ~nWd~~D~~a~~~~~~~~~~~~----~~~~~i~~W~~s~~~w~rR~ai~~~l~~~~--------~~~~~~~~~i~~~~~- 168 (220)
T 2b6c_A 102 AWWDSVDAWRKFFGSWVALHLT----ELPTIFALFYGAENFWNRRVALNLQLMLKE--------KTNQDLLKKAIIYDR- 168 (220)
T ss_dssp CSHHHHHHHHHHHHHHHHHSGG----GHHHHHHHHTTCSSHHHHHHHHHTTTTCGG--------GCCHHHHHHHHHHTT-
T ss_pred CcHHHHHHHHHHHHHHHHHChH----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHhC-
Confidence 4576665433444444433222 24466777888876 666666554432211 122344556555577
Q ss_pred CCCcHHHHHHHHHHHHHHHhhhc
Q 006201 420 QDPNNHVKDTTAWTLGRMFEFLH 442 (657)
Q Consensus 420 ~d~~~~vr~~a~~~l~~l~~~~~ 442 (657)
.|++..||.+..|.|..+++..+
T Consensus 169 ~d~~~yV~kavgW~Lr~~~k~~~ 191 (220)
T 2b6c_A 169 TTEEFFIQKAIGWSLRQYSKTNP 191 (220)
T ss_dssp TCCCHHHHHHHHHHHHHHTTTCH
T ss_pred CChHHHHHHHHHHHHHHHHhhCH
Confidence 99999999999999999888653
No 145
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=63.87 E-value=60 Score=26.63 Aligned_cols=81 Identities=11% Similarity=0.034 Sum_probs=57.5
Q ss_pred cHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCch--hHHHHHHHHHHhhccc---cchhhhHHHHHH
Q 006201 455 NCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTP--FFQEIVQALLTVTHRE---DAGESRLRTAAY 528 (657)
Q Consensus 455 ~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~--~~~~i~~~L~~~l~~~---~~~~~~~~~~~~ 528 (657)
.-...+..+.+.+.. ++.++..|...|..++++|+.. +.. --..++..|.+++... +..+..++..++
T Consensus 45 ~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~------fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil 118 (149)
T 3g2s_A 45 GPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR------FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKIL 118 (149)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHH------HHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHH------HHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHH
Confidence 346677888888875 7999999999999999998641 111 0134566666666532 112578899999
Q ss_pred HHHHHHHHhcccc
Q 006201 529 ETLNEVVRCSTDE 541 (657)
Q Consensus 529 ~al~~l~~~~~~~ 541 (657)
+.+.......+..
T Consensus 119 ~li~~W~~~f~~~ 131 (149)
T 3g2s_A 119 ELLYSWTVGLPEE 131 (149)
T ss_dssp HHHHHHHHHCTTC
T ss_pred HHHHHHHHHhCCC
Confidence 9999999888754
No 146
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=63.14 E-value=88 Score=28.29 Aligned_cols=141 Identities=11% Similarity=0.055 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHhhhcc--ccccchhhH-hHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHH
Q 006201 147 TKQATLETLGYICEEVS--SDAVEQDHV-NKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRV 223 (657)
Q Consensus 147 ~~~~~l~~l~~i~~~~~--~~~l~~~~~-~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~ 223 (657)
..-.++..|..++.+-+ ...+ +.++ --++|.+....++ .+-+.+|..++..++.++..-......-....++++.
T Consensus 72 RVcnaLaLlQcvAshpetr~~Fl-~a~iplyLyPfL~t~sk~-r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiipl 149 (268)
T 2fv2_A 72 RVCNALALLQCVASHPETRSAFL-AAHIPLFLYPFLHTVSKT-RPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPL 149 (268)
T ss_dssp HHHHHHHHHHHHHHCTTTHHHHH-HTTGGGGTHHHHHCCCCS-HHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHcCcchhhHHH-HccchHHhhhhhccccCC-CcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHH
Confidence 33566667777665421 1122 2222 2355655444332 3445789999999999875311100000001246777
Q ss_pred HHhhccCCcHHHHHHHHHHHHHHHHHHH---------HhhHHhHHHHHHHHH-HHHhcCChHHHHHHHHHHHHHhHH
Q 006201 224 VCEATLSPEVKIRQAAFECLVAISSTYY---------EKLAPYIQDIFNITA-KAVREDEEPVALQAIEFWSSVCDE 290 (657)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~l~~l~~~~~---------~~~~~~~~~l~~~~~-~~~~~~~~~v~~~a~~~~~~l~~~ 290 (657)
..+.++.+++-.+..+.-.+.++..... +.|. .+..++..++ ...++..+..-+..++....+++.
T Consensus 150 CLrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~-av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 150 CLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFS-HVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHH-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 7777777777777777777777765431 2221 1222332222 233456667777777777777764
No 147
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=61.74 E-value=66 Score=26.38 Aligned_cols=77 Identities=9% Similarity=0.098 Sum_probs=52.6
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhcc------CCcHHHHHHHHHHHHHHH
Q 006201 174 KILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATL------SPEVKIRQAAFECLVAIS 247 (657)
Q Consensus 174 ~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~------~~~~~~~~~~~~~l~~l~ 247 (657)
..+..+..-++ ..++.+...|+..+-.++.-....|-.+.-...+++.+...+. ..+..|+..+++.+..+.
T Consensus 48 ~a~ral~krl~--~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 48 LATRLLAHKIQ--SPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 34455666666 6789999999999999887554443222112356666665553 257899999999999988
Q ss_pred HHHHH
Q 006201 248 STYYE 252 (657)
Q Consensus 248 ~~~~~ 252 (657)
..++.
T Consensus 126 ~~f~~ 130 (149)
T 3g2s_A 126 VGLPE 130 (149)
T ss_dssp HHCTT
T ss_pred HHhCC
Confidence 77643
No 148
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=59.82 E-value=15 Score=29.83 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=31.8
Q ss_pred CCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhc
Q 006201 128 QWPELIGALLSNIHQLPPHTKQATLETLGYICEEV 162 (657)
Q Consensus 128 ~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~ 162 (657)
.++++++.|...+++.++.++.-+|++|..++..-
T Consensus 46 ~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~G 80 (140)
T 1vdy_A 46 IVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKS 80 (140)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhC
Confidence 46899999999999999999999999999999876
No 149
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=59.24 E-value=75 Score=28.23 Aligned_cols=100 Identities=15% Similarity=0.162 Sum_probs=61.8
Q ss_pred hhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcc
Q 006201 375 NITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQG 454 (657)
Q Consensus 375 ~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 454 (657)
.+.++||.. ..-+..++..- ... -...+..|.+.+ ++.++.+...|+.+|..+.+.++.... ..+.
T Consensus 20 ~~~~~dw~~----ileicD~I~~~-~~~----~k~a~ral~krl-~~~n~~v~l~aL~LLe~~vkNcG~~f~--~eia-- 85 (226)
T 3zyq_A 20 LLLETDWES----ILQICDLIRQG-DTQ----AKYAVNSIKKKV-NDKNPHVALYALEVMESVVKNCGQTVH--DEVA-- 85 (226)
T ss_dssp TCSSCCHHH----HHHHHHHHHTT-SSC----HHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHCHHHH--HHHS--
T ss_pred CCCCcCHHH----HHHHHHHHhCC-Ccc----HHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHhcchHHH--Hhhc--
Confidence 344567865 33344444321 121 245677888999 999999999999999999888752110 0111
Q ss_pred cHHHHHHHHHHHccc--chHHHHHHHHHHHHHHhhcc
Q 006201 455 NCQQIISVLLQSMKD--VPNVAEKACGALYFLAQGFE 489 (657)
Q Consensus 455 ~~~~il~~l~~~l~d--~~~v~~~a~~al~~l~~~~~ 489 (657)
-..+++.|.+.++. ++.|+..+...+..-...+.
T Consensus 86 -s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 121 (226)
T 3zyq_A 86 -NKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFR 121 (226)
T ss_dssp -SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTT
T ss_pred -cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 12333344443432 57899999888888877664
No 150
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=57.29 E-value=36 Score=30.54 Aligned_cols=71 Identities=7% Similarity=0.024 Sum_probs=49.7
Q ss_pred hchHHHHHhhhcCcc-hhhHHHHHH----HHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Q 006201 366 PLVMPFVEENITKQE-WRQREAATY----AFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEF 440 (657)
Q Consensus 366 ~~l~~~l~~~l~~~~-~~~r~aal~----~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~ 440 (657)
|...+.+...+.|++ |..|. |+. .+.... ....-...+..++..+...+ .|++..|+.+..|+|..++..
T Consensus 107 ~~~~~~~~~W~~s~~~w~rR~-ai~~q~~ll~~~~---~k~~~~~~~~~~l~~i~~~l-~~~~~~v~kAi~W~Lr~~gk~ 181 (235)
T 1t06_A 107 NIAQDVADKWIASGDELKMSA-GWSCYCWLLGNRK---DNAFSESKISDMLEMVKDTI-HHSPERTKSAMNNFLNTVAIS 181 (235)
T ss_dssp SSHHHHHHHHHHSCCHHHHHH-HHHHHHHHHHHSC---GGGSCHHHHHHHHHHHHHHG-GGSCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHcCcHHHHHHH-HHHHHHHHHhhcc---ccCcChhhHHHHHHHHHHHc-cCChHHHHHHHHHHHHHHHhh
Confidence 556677778888877 55554 544 333311 11222456777888888889 999999999999999999887
Q ss_pred h
Q 006201 441 L 441 (657)
Q Consensus 441 ~ 441 (657)
.
T Consensus 182 ~ 182 (235)
T 1t06_A 182 Y 182 (235)
T ss_dssp C
T ss_pred C
Confidence 5
No 151
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=53.64 E-value=89 Score=25.39 Aligned_cols=86 Identities=16% Similarity=0.139 Sum_probs=59.1
Q ss_pred HHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHH
Q 006201 116 VAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLA 195 (657)
Q Consensus 116 l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~ 195 (657)
|+.+|.... ..-+.++..+.+.+....+..+..++.++..|++... ..+.......+.+.+..... ..++.+|..
T Consensus 30 LT~~a~~~~--~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g-~~y~~~F~~~l~~~f~~~~~--~~d~~~r~k 104 (144)
T 1sz9_A 30 LTKLAEENI--SCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVG-SPYTIYFSRNLFNLYKRTYL--LVDNTTRTK 104 (144)
T ss_dssp HHHHHHHTG--GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTC-TTHHHHHHTTHHHHHHHHHH--TSCHHHHHH
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHH--hCCHHHHHH
Confidence 444554321 2456788888888887889999999999999999984 33312333445556666655 457889988
Q ss_pred HHHHHHHHHhh
Q 006201 196 ATRALYNALGF 206 (657)
Q Consensus 196 al~~l~~~~~~ 206 (657)
..+.+..|-..
T Consensus 105 ~~rL~~~W~~~ 115 (144)
T 1sz9_A 105 LINMFKLWLNP 115 (144)
T ss_dssp HHHHHHHHTSG
T ss_pred HHHHHHHHhCc
Confidence 88888776543
No 152
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=52.15 E-value=1.2e+02 Score=26.63 Aligned_cols=80 Identities=8% Similarity=0.045 Sum_probs=51.5
Q ss_pred cHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHH
Q 006201 455 NCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNE 533 (657)
Q Consensus 455 ~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~ 533 (657)
.-...+..|.+.|.. ++.++..|...|..++.+++.. ....+. -..++..|..++.+.. +..++..+++.+..
T Consensus 39 ~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~--f~~eva--~~~fl~~l~~l~~~~~--~~~Vk~kil~li~~ 112 (220)
T 1dvp_A 39 TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAP--VHEEVF--TKENCEMFSSFLESTP--HENVRQKMLELVQT 112 (220)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH--HHHHHS--SHHHHHHHHHHHHHCS--CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHH--HHHHHH--hHHHHHHHHHHhcCCC--cHHHHHHHHHHHHH
Confidence 346777788787875 7999999999999999997531 000011 0124444444444332 46788888888877
Q ss_pred HHHhccc
Q 006201 534 VVRCSTD 540 (657)
Q Consensus 534 l~~~~~~ 540 (657)
.....+.
T Consensus 113 W~~~f~~ 119 (220)
T 1dvp_A 113 WAYAFRS 119 (220)
T ss_dssp HHHHTTT
T ss_pred HHHHhcc
Confidence 7777664
No 153
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=52.02 E-value=23 Score=35.47 Aligned_cols=71 Identities=15% Similarity=0.287 Sum_probs=48.1
Q ss_pred hHHHHHHHhhcC----------CChhHHHHHHHHHHHHhhhccccccchhhHh--HHHHHHHhccCCCCCCHHHHHHHHH
Q 006201 131 ELIGALLSNIHQ----------LPPHTKQATLETLGYICEEVSSDAVEQDHVN--KILTAVVQGMNASESNNDVRLAATR 198 (657)
Q Consensus 131 ~l~~~l~~~l~~----------~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~--~l~~~l~~~l~~~~~~~~vr~~al~ 198 (657)
+++..|.+.+.+ .++.+..-|+.=++.+++.+ |..- ..+. ..-..+++.++ +++++||..|+.
T Consensus 395 ~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~-P~gr--~i~~~lg~K~~VM~Lm~--h~d~~Vr~~AL~ 469 (480)
T 1ho8_A 395 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELL-PESI--DVLDKTGGKADIMELLN--HSDSRVKYEALK 469 (480)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHC-TTHH--HHHHHHSHHHHHHHHTS--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHC-cchh--HHHHHcCcHHHHHHHhc--CCCHHHHHHHHH
Confidence 567777777763 24555666667777777777 4321 2222 23456677888 789999999999
Q ss_pred HHHHHHhh
Q 006201 199 ALYNALGF 206 (657)
Q Consensus 199 ~l~~~~~~ 206 (657)
|+..++.+
T Consensus 470 avQklm~~ 477 (480)
T 1ho8_A 470 ATQAIIGY 477 (480)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99997753
No 154
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=51.70 E-value=1.3e+02 Score=26.68 Aligned_cols=80 Identities=13% Similarity=0.168 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHH
Q 006201 456 CQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEV 534 (657)
Q Consensus 456 ~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l 534 (657)
-...+..|.+.|.. ++.++..|...|..++++++.. ....+. -..++..|..+++... +..++..+++.+...
T Consensus 43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~--f~~eia--s~~fl~~l~~l~~~~~--~~~Vk~kil~li~~W 116 (226)
T 3zyq_A 43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQT--VHDEVA--NKQTMEELKDLLKRQV--EVNVRNKILYLIQAW 116 (226)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHS--SHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchH--HHHhhc--cHHHHHHHHHHhccCC--CHHHHHHHHHHHHHH
Confidence 47778888888885 7999999999999999997641 000010 1233334444444322 467888888888888
Q ss_pred HHhcccc
Q 006201 535 VRCSTDE 541 (657)
Q Consensus 535 ~~~~~~~ 541 (657)
....+..
T Consensus 117 ~~~f~~~ 123 (226)
T 3zyq_A 117 AHAFRNE 123 (226)
T ss_dssp HHHTTTC
T ss_pred HHHhCCC
Confidence 8877653
No 155
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=51.12 E-value=95 Score=28.90 Aligned_cols=79 Identities=13% Similarity=0.148 Sum_probs=46.3
Q ss_pred HHHHHHHHhcCC------ChHHHHHHHHHHHHHHhcCcccHH--------HHHHHHHhcCCCChhHHHHHHHHHhhhccc
Q 006201 4 EVTQILLNAQSV------DGTVRKQAEESLKQYQEQNLPGFL--------LSLAGELVNDEKPVESRKLAGLILKNALDA 69 (657)
Q Consensus 4 ~l~~~l~~~~s~------d~~~r~~A~~~L~~~~~~~~~~~~--------~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~ 69 (657)
+|..+..-+.++ |.+.-..|-..|.++... -.|. ..|-.++.+...++.+|..|+.++...+++
T Consensus 23 ~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHD--i~~G~KI~~~ef~lL~nL~~~~~~~~~~rE~aarII~ssLRN 100 (315)
T 3qml_C 23 DFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHD--YKHGYKIITHEFALLANLSLNENLPLTLRELSTRVITSCLRN 100 (315)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTS--HHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhh--HHhhhHHHhCcHHHHHHHHhhccCChhHHHHHHHHHHHHHcc
Confidence 344444444443 334556666666655332 1222 223345555457889999999999999998
Q ss_pred chhhhHHHhhhhcccC
Q 006201 70 KEQHRKFELVQRWLSL 85 (657)
Q Consensus 70 ~~~~~~~~~~~~~~~l 85 (657)
++...... ...|+.+
T Consensus 101 NP~Al~~V-~~~~p~f 115 (315)
T 3qml_C 101 NPPVVEFI-NESFPNF 115 (315)
T ss_dssp CHHHHHHH-HHHCTTH
T ss_pred CHHHHHHH-HHhChhH
Confidence 77655433 2356554
No 156
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=50.64 E-value=1.4e+02 Score=26.63 Aligned_cols=121 Identities=8% Similarity=-0.053 Sum_probs=72.7
Q ss_pred CChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHHHHHHhcCCCChHHHHHH-HHHHHHHHhhhcCCCCC
Q 006201 51 KPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTA-SQVVAKVAGIELPHKQW 129 (657)
Q Consensus 51 ~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~a-a~~l~~i~~~~~~~~~~ 129 (657)
..-+.|.+|..+++.... .++++....+.. ++. ..++..+.-.. ..+++.+.... |.
T Consensus 73 ~~~E~r~~ai~~l~~~~k---------------~~~~~~l~~~~~-~l~--~~~nWd~~D~~a~~~~g~~~~~~-p~--- 130 (232)
T 3jxy_A 73 PEREFQAAALDIMQKYKK---------------HINETHIPFLEE-LIV--TKSWWDSVDSIVPTFLGDIFLKH-PE--- 130 (232)
T ss_dssp SBHHHHHHHHHHHHHTGG---------------GCCGGGHHHHHH-HHT--SSCCHHHHHHHTTTHHHHHHHHC-GG---
T ss_pred cHHHHHHHHHHHHHHHHH---------------hCCHHHHHHHHH-HHc--cCCChHHHHHhhHHHHHHHHHHC-HH---
Confidence 467799998888875322 234444444432 222 23454554444 45677777653 31
Q ss_pred chHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHH
Q 006201 130 PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNAL 204 (657)
Q Consensus 130 ~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~ 204 (657)
.+.+.+...+.|++.-.|..|+.++-. .. . ......+++.+...+. |++.-|+++.-.+|..+.
T Consensus 131 -~~~~~l~~W~~s~~~w~rR~ai~~~l~---~~----~-~~d~~~~~~~i~~~~~--d~~~yV~kAvgW~Lr~~~ 194 (232)
T 3jxy_A 131 -LISAYIPKWIASDNIWLQRAAILFQLK---YK----Q-KMDEELLFWIIGQLHS--SKEFFIQKAIGWVLREYA 194 (232)
T ss_dssp -GGGGTHHHHHHSSCHHHHHHHHHTTTT---CG----G-GCCHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHhcCCchHHHHHHHHHHHH---HH----h-CCCHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHH
Confidence 255667788899999888888765421 11 1 2223345555556666 788999998888887753
No 157
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=48.30 E-value=51 Score=27.31 Aligned_cols=83 Identities=11% Similarity=0.066 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHH--HHHHH-HHHHHHHHHhhhcCChhHHHHHHHH
Q 006201 501 FFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVM--QLVPL-IMMELHQTLEAQKLSSDEREKQNEI 577 (657)
Q Consensus 501 ~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~--~l~~~-l~~~l~~~~~~~~~~~~~~~~~~~~ 577 (657)
-....+..|.+-++... +..++..++..|..+++.+|..|..-+. .+++. +++.+... .++ ...+
T Consensus 50 ~~k~a~ral~krl~~~~--n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k--------~~~--~~~V 117 (157)
T 1elk_A 50 GPKDALRAVKKRIVGNK--NFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPK--------NNP--PTIV 117 (157)
T ss_dssp HHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTT--------TCC--CHHH
T ss_pred cHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccC--------CCC--cHHH
Confidence 34566777777776432 2456668999999999999976654332 24444 33333210 010 1246
Q ss_pred HHHHHHHHHHHHHHhCCC
Q 006201 578 QGLLCGCLQVIIQKLGSS 595 (657)
Q Consensus 578 ~~~~~~~l~~l~~~~~~~ 595 (657)
+..+++.+..-...++..
T Consensus 118 k~kil~li~~W~~~f~~~ 135 (157)
T 1elk_A 118 HDKVLNLIQSWADAFRSS 135 (157)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 778999999988888765
No 158
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=48.05 E-value=1.4e+02 Score=26.19 Aligned_cols=100 Identities=11% Similarity=0.092 Sum_probs=61.6
Q ss_pred hhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcc
Q 006201 375 NITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQG 454 (657)
Q Consensus 375 ~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 454 (657)
.+.++||.. ..-+..++..- +.. -...+..|.+.+ ++.++.+...|+.+|..+.+.++.... ..+.
T Consensus 17 ~~~~~dw~~----~leicd~i~~~-~~~----~k~a~r~l~krl-~~~n~~~~l~aL~Lle~~vkNcG~~f~--~eva-- 82 (220)
T 1dvp_A 17 LRLEPDWPS----ILLICDEINQK-DVT----PKNAFAAIKKKM-NSPNPHSSCYSLLVLESIVKNCGAPVH--EEVF-- 82 (220)
T ss_dssp TCSSCCHHH----HHHHHHHHHTT-SSC----HHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHSHHHHH--HHHS--
T ss_pred CCCCcCHHH----HHHHHHhhcCC-CcC----HHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhccCHHHH--HHHH--
Confidence 445678865 33344444321 121 245667788899 999999999999999999888752110 0011
Q ss_pred cHHHHHHHHHHHccc--chHHHHHHHHHHHHHHhhcc
Q 006201 455 NCQQIISVLLQSMKD--VPNVAEKACGALYFLAQGFE 489 (657)
Q Consensus 455 ~~~~il~~l~~~l~d--~~~v~~~a~~al~~l~~~~~ 489 (657)
-..+++.+.+.+.+ +..|+..+...+..-...+.
T Consensus 83 -~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 118 (220)
T 1dvp_A 83 -TKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR 118 (220)
T ss_dssp -SHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred -hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhc
Confidence 12234444444432 57899888888887777654
No 159
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=47.67 E-value=3.8e+02 Score=30.92 Aligned_cols=134 Identities=13% Similarity=0.096 Sum_probs=78.9
Q ss_pred ChhHHHHHHHHHhhhcccchhhhHHHhhhhcccCChHHHHHHHH-----------HHH----HhcCCCChHHHHHHHHHH
Q 006201 52 PVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKS-----------FIL----KTLSSPAHDARSTASQVV 116 (657)
Q Consensus 52 ~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~-----------~ll----~~l~~~~~~vr~~aa~~l 116 (657)
+...|..|-.++|+.+.. ..++++....... .++ .++.+.++.++.-++...
T Consensus 358 n~~~rk~aE~ilrkkI~~-------------G~it~~ll~~~f~~h~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY 424 (1323)
T 3s4w_B 358 STQTKKGVEKLLRNKIQS-------------DCIQEQLLDSAFSTHYLVLKDICPSILLLAQTLFHSQDQRIILFGSLLY 424 (1323)
T ss_dssp CHHHHHHHHHHHHHHHTT-------------TCSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHc-------------CCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 456788888888887764 1233322221111 122 235567788888888877
Q ss_pred HHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhccccccchhhHhHHHHHHHhccCCCCCCHHHHHHH
Q 006201 117 AKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAA 196 (657)
Q Consensus 117 ~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~a 196 (657)
..++... ....-.+++..|...+.+++......|+.+|..++... ++.+ .++ ..++..++..+.+ =....+|+.
T Consensus 425 ~~lF~~f-d~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~-~~~l-~~~-a~~l~giLD~l~~-l~~~QiRkl- 498 (1323)
T 3s4w_B 425 KYAFKFF-DTYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLN-ASAM-RLN-AAFVKGILDYLEN-MSPQQIRKI- 498 (1323)
T ss_dssp HHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC-HHHH-HHT-HHHHHGGGGGGGG-CCHHHHHHH-
T ss_pred HHHHHhc-cchhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcC-HHHH-hHH-HHHHHHHHHhhcC-CCHHHHHHH-
Confidence 7777764 21123788888988888888877888999999998765 4444 222 2233334444432 123455543
Q ss_pred HHHHHHHH
Q 006201 197 TRALYNAL 204 (657)
Q Consensus 197 l~~l~~~~ 204 (657)
...|..+.
T Consensus 499 f~iL~~la 506 (1323)
T 3s4w_B 499 FCILSTLA 506 (1323)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 160
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=46.19 E-value=1.5e+02 Score=25.99 Aligned_cols=137 Identities=12% Similarity=-0.045 Sum_probs=84.9
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcC-CChhHHHHHHHHHHHHhhhccccccchhhHhHHH
Q 006201 98 LKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQ-LPPHTKQATLETLGYICEEVSSDAVEQDHVNKIL 176 (657)
Q Consensus 98 l~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~~l~~l~~i~~~~~~~~l~~~~~~~l~ 176 (657)
..+..++.-+.|..++.+++..... ..++-++.+-..+.. ++..+......+++.++... ++ .+.
T Consensus 61 ~~L~~s~~~E~r~la~~~l~~~~~~-----~~~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~-~~--------~~~ 126 (220)
T 2b6c_A 61 EAYYQKTEREYQYVAIDLALQNVQR-----FSLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH-LT--------ELP 126 (220)
T ss_dssp HHHHTSSSHHHHHHHHHHHHHTGGG-----CCHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS-GG--------GHH
T ss_pred HHHHcCchhHHHHHHHHHHHHHHhh-----CCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHC-hH--------HHH
Confidence 3445556677787777777654322 234555555555543 35566555445555554443 22 123
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhHH
Q 006201 177 TAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAP 256 (657)
Q Consensus 177 ~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 256 (657)
+.+..-+. +++.-+|..|+.++. .+... .+.+.+++.+...+.+++.-+++++-..|..+....|+.+.+
T Consensus 127 ~~i~~W~~--s~~~w~rR~ai~~~l---~~~~~-----~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~ 196 (220)
T 2b6c_A 127 TIFALFYG--AENFWNRRVALNLQL---MLKEK-----TNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEE 196 (220)
T ss_dssp HHHHHHTT--CSSHHHHHHHHHTTT---TCGGG-----CCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHc--CCCHHHHHHHHHHHH---HHHHC-----CCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 44555556 677788888877542 33221 122567777777888899999999999999999888877766
Q ss_pred hH
Q 006201 257 YI 258 (657)
Q Consensus 257 ~~ 258 (657)
++
T Consensus 197 fl 198 (220)
T 2b6c_A 197 LM 198 (220)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 161
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=43.71 E-value=2.1e+02 Score=26.75 Aligned_cols=144 Identities=8% Similarity=-0.037 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHHhhcCCCCCcc---hHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHH
Q 006201 382 RQREAATYAFGSILEGPSPEKL---VPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQ 458 (657)
Q Consensus 382 ~~r~aal~~l~~i~~~~~~~~~---~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 458 (657)
..|..++..+...+-....... ...-..++..++..+..+..+..+..+++++.++...-... .........
T Consensus 117 ~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~-----~~l~~~~~~ 191 (304)
T 3ebb_A 117 DIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQ-----KLMMSQRES 191 (304)
T ss_dssp TTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHH-----HHHHHTHHH
T ss_pred HhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhH-----HHHHHHHHH
Confidence 4566666666654422100000 00113445555566622345667777787777776643210 011134566
Q ss_pred HHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHh
Q 006201 459 IISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRC 537 (657)
Q Consensus 459 il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~ 537 (657)
+++.+...+.+ ++.+|..++..+.++.-..... ..+ +-...++..+..+++..+ +.+....++-|+|+++..
T Consensus 192 il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~----~~~-~~~~~ll~~l~~il~~~~--d~EalyR~LvALGtL~~~ 264 (304)
T 3ebb_A 192 LMSHAIELKSGSNKNIHIALATLALNYSVCFHKD----HNI-EGKAQCLSLISTILEVVQ--DLEATFRLLVALGTLISD 264 (304)
T ss_dssp HHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHS----CCH-HHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhc----CCc-hHHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHhC
Confidence 77777766554 6889988888888877554321 111 334445555566665443 234444688899999865
No 162
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=42.29 E-value=1.3e+02 Score=23.88 Aligned_cols=67 Identities=6% Similarity=0.107 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHH
Q 006201 406 LVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFL 484 (657)
Q Consensus 406 ~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l 484 (657)
+....+...+..| +.....++..+.|++.. ..+-+.++..+.+.+.. .+.-+......+..+
T Consensus 5 ~~e~~l~~~L~~L-~~s~~sI~~~s~w~l~h----------------~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndI 67 (132)
T 4flb_A 5 ALESSLDRKFQSV-TNTMESIQGLSSWCIEN----------------KKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDV 67 (132)
T ss_dssp HHHHHHHHHHHHC-CSSHHHHHHHHHHHHHT----------------GGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-cccHHHHHHHHHHHHHh----------------HHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Confidence 3455566677778 77777788777777742 23446677777777774 567778888889999
Q ss_pred Hhhcc
Q 006201 485 AQGFE 489 (657)
Q Consensus 485 ~~~~~ 489 (657)
+.+..
T Consensus 68 l~ns~ 72 (132)
T 4flb_A 68 IQNCK 72 (132)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 88753
No 163
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=41.65 E-value=84 Score=25.04 Aligned_cols=62 Identities=16% Similarity=0.190 Sum_probs=41.9
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhccCcCCCccCCcccHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhcc
Q 006201 411 LNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFE 489 (657)
Q Consensus 411 ~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~ 489 (657)
+...+..| +.....+...+.|++.. ..+.+.++..+.+.+.. .+.-+......+..++.++.
T Consensus 9 l~~~L~~L-~~s~~sI~~~s~w~l~~----------------~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~ 71 (135)
T 4fu3_A 9 LEKKLSEL-SNSQQSVQTLSLWLIHH----------------RKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSK 71 (135)
T ss_dssp HHHHHHHC-CSSTTHHHHHHHHHHHT----------------GGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHc-cccHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence 44556677 77777788888877732 23346667777777764 45567788888888887653
No 164
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=41.27 E-value=1.5e+02 Score=24.35 Aligned_cols=88 Identities=8% Similarity=0.036 Sum_probs=58.0
Q ss_pred cHHHHHHHHHHHcc--cchHHHHHHHHHHHHHHhhccCCCCCCCCCchhHH-----HHHHH-HHHhhccccchhhhHHHH
Q 006201 455 NCQQIISVLLQSMK--DVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQ-----EIVQA-LLTVTHREDAGESRLRTA 526 (657)
Q Consensus 455 ~~~~il~~l~~~l~--d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~-----~i~~~-L~~~l~~~~~~~~~~~~~ 526 (657)
.-...+..+.+.+. .++.++..|...|..++++|+. +|-. .++.. |.+++......+..++..
T Consensus 50 ~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~---------~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~k 120 (152)
T 3rru_A 50 GPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGP---------SFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNR 120 (152)
T ss_dssp HHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCH---------HHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCH---------HHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHH
Confidence 34677788888886 3688888999999999999864 3322 33433 445554321113578889
Q ss_pred HHHHHHHHHHhcccc-cHHHHHHHHH
Q 006201 527 AYETLNEVVRCSTDE-TAPMVMQLVP 551 (657)
Q Consensus 527 ~~~al~~l~~~~~~~-~~~~~~~l~~ 551 (657)
+++.+.......+.. -.+++..+..
T Consensus 121 il~li~~Wa~~F~~~p~l~~i~~~Y~ 146 (152)
T 3rru_A 121 ILNFIKTWSQGFPGGVDVSEVKEVYL 146 (152)
T ss_dssp HHHHHHHHHTCCSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 999999999888753 2345554433
No 165
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=39.11 E-value=1e+02 Score=25.04 Aligned_cols=76 Identities=14% Similarity=0.061 Sum_probs=52.3
Q ss_pred hhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCCCcchHHHHH-HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhc
Q 006201 365 VPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNI-ALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLH 442 (657)
Q Consensus 365 ~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~~~~-i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~ 442 (657)
-+.++..+.+.+....+..|-.+++.+.+|+..++ ..+...+.. +.+.+.... ...+..+|.....++...-+..+
T Consensus 41 a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g-~~y~~~F~~~l~~~f~~~~-~~~d~~~r~k~~rL~~~W~~~~~ 117 (144)
T 1sz9_A 41 AQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVG-SPYTIYFSRNLFNLYKRTY-LLVDNTTRTKLINMFKLWLNPND 117 (144)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTC-TTHHHHHHTTHHHHHHHHH-HTSCHHHHHHHHHHHHHHTSGGG
T ss_pred HHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHhCccc
Confidence 45566666666666667889999999999999875 334333333 344444455 55678899998888888777654
No 166
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=36.28 E-value=1.6e+02 Score=27.33 Aligned_cols=97 Identities=8% Similarity=0.137 Sum_probs=57.8
Q ss_pred CCCChHHHHHHHHHHHHHHhhhcC-----CCCCchHHHHHHHhhcC-------CChhHHHHHHHHHHHHhhhccccccch
Q 006201 102 SSPAHDARSTASQVVAKVAGIELP-----HKQWPELIGALLSNIHQ-------LPPHTKQATLETLGYICEEVSSDAVEQ 169 (657)
Q Consensus 102 ~~~~~~vr~~aa~~l~~i~~~~~~-----~~~~~~l~~~l~~~l~~-------~~~~~~~~~l~~l~~i~~~~~~~~l~~ 169 (657)
...++.+|..++.+|+.-.+.-.| ...||.++..++..+.+ ........-+.++..++... ..+..
T Consensus 80 ~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~--~~F~~ 157 (315)
T 3qml_C 80 ENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTS--EDLPI 157 (315)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS--TTC--
T ss_pred ccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh--Hhhhh
Confidence 334567888888888877665422 13699999888877643 23355566677777766653 22322
Q ss_pred hhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHH
Q 006201 170 DHVNKILTAVVQGMNASESNNDVRLAATRALYNAL 204 (657)
Q Consensus 170 ~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~ 204 (657)
..+..+...+. . . ..++.++..++..+..+.
T Consensus 158 ~~m~~L~~ly~-~-~--~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 158 YSTVVLQNVYE-R-N--NKDKQLQIKVLELISKIL 188 (315)
T ss_dssp CCHHHHHHHHH-H-T--TTCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHc-c-C--CCCHHHHHHHHHHHHHHc
Confidence 23333333332 1 1 247788888888777754
No 167
>3s51_A Protein FACI, fanconi anemia group I protein homolog; DNA repair, DNA binding protein; 3.30A {Mus musculus} PDB: 3s4z_A* 3s4w_A
Probab=34.65 E-value=5.8e+02 Score=29.29 Aligned_cols=95 Identities=13% Similarity=0.105 Sum_probs=61.2
Q ss_pred hHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhch-----------------h-----hcC-----ChhhHHHHHHHHH
Q 006201 173 NKILTAVVQGMNASESNNDVRLAATRALYNALGFAQ-----------------A-----NFS-----NDMERDYIMRVVC 225 (657)
Q Consensus 173 ~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~-----------------~-----~~~-----~~~~~~~il~~l~ 225 (657)
+.++-.+-+.+- ..+.+.|..|+..+..++.-.. . ... ++...-+++..+-
T Consensus 514 D~lIlvLRKamf--~re~~~R~~AV~GfL~lLk~~~~~~~~sSsq~sQs~~~sQ~~~~~~~~~~~~~Ne~l~lEIlg~LR 591 (1308)
T 3s51_A 514 DSLILVLRKAMF--ASQLDARKSAVAGFLLLLKNFKVLGSLPSSQCTQSIGVTQVRVDVHSRYSAVANETFCLEIIDSLK 591 (1308)
T ss_dssp HHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHEECCTTCC---------CCCEESSSCSSSCSSCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHhhcccccccchhhhhhhhhhhhhhcccccccccchhHHHHHHHHHHH
Confidence 444545555555 4677888888888877663221 0 000 1122246777777
Q ss_pred hhccCCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHh
Q 006201 226 EATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVR 270 (657)
Q Consensus 226 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~ 270 (657)
+++. ...+||...++.+.+++...+....+.++-+.+.+.....
T Consensus 592 RcL~-Qqa~VR~~LY~gl~~~v~~n~~l~~~vl~~L~~hf~~y~~ 635 (1308)
T 3s51_A 592 RSLG-QQADIRLMLYDGFYDVLRRNSQLASSIMQTLFSQLKQFYE 635 (1308)
T ss_dssp GGGG-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHBC
T ss_pred HHhc-CcHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHhcC
Confidence 7774 5789999999999999998887665656666666655543
No 168
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=34.09 E-value=34 Score=34.28 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHhhh
Q 006201 92 QIKSFILKTLSSPAHDARSTASQVVAKVAGIE 123 (657)
Q Consensus 92 ~i~~~ll~~l~~~~~~vr~~aa~~l~~i~~~~ 123 (657)
..|..+.+.|.++++.||..|-.|+..+..+.
T Consensus 447 g~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~~ 478 (480)
T 1ho8_A 447 GGKADIMELLNHSDSRVKYEALKATQAIIGYT 478 (480)
T ss_dssp SHHHHHHHHTSCSSHHHHHHHHHHHHHHHHHS
T ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 46888899999999999999999999887653
No 169
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=33.62 E-value=3e+02 Score=25.65 Aligned_cols=115 Identities=9% Similarity=0.089 Sum_probs=66.5
Q ss_pred chHHHHHHHhhcC-CChhHHHHHHHHHHHHhhhcc-ccccchhhHhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhhc
Q 006201 130 PELIGALLSNIHQ-LPPHTKQATLETLGYICEEVS-SDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFA 207 (657)
Q Consensus 130 ~~l~~~l~~~l~~-~~~~~~~~~l~~l~~i~~~~~-~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~ 207 (657)
..++..+...+.+ ..+..+-.+++++..++..-. .+.+ ..+...+++.+...+. +.+..+|.++...+.++..+.
T Consensus 146 ~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l-~~~~~~il~~~~~~~~--~~nknl~iA~ATl~~NlAv~~ 222 (304)
T 3ebb_A 146 AQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLM-MSQRESLMSHAIELKS--GSNKNIHIALATLALNYSVCF 222 (304)
T ss_dssp HHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHH-HHTHHHHHHHHHGGGS--SCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHH-HHHHHHHHHHHHHHhc--CCChhHHHHHHHHHHHHHHHH
Confidence 3455455555443 244456666666666655421 1122 2345677777777665 578899999999999987764
Q ss_pred hhhcCChhhHHHHHHHHHhhcc-CCcHHHHHHHHHHHHHHHH
Q 006201 208 QANFSNDMERDYIMRVVCEATL-SPEVKIRQAAFECLVAISS 248 (657)
Q Consensus 208 ~~~~~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~l~~l~~ 248 (657)
.+... ......++..+...++ ..+.+....++.+++.++.
T Consensus 223 ~~~~~-~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 223 HKDHN-IEGKAQCLSLISTILEVVQDLEATFRLLVALGTLIS 263 (304)
T ss_dssp HHSCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred hhcCC-chHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 33211 1122344444444443 3566766677777777664
No 170
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=29.96 E-value=2.9e+02 Score=24.40 Aligned_cols=138 Identities=16% Similarity=0.082 Sum_probs=78.9
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhc-CCChhHHHHH-HHHHHHHhhhccccccchhhHhHH
Q 006201 98 LKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIH-QLPPHTKQAT-LETLGYICEEVSSDAVEQDHVNKI 175 (657)
Q Consensus 98 l~~l~~~~~~vr~~aa~~l~~i~~~~~~~~~~~~l~~~l~~~l~-~~~~~~~~~~-l~~l~~i~~~~~~~~l~~~~~~~l 175 (657)
..+..++..+.|-.+...+....+. ..++-++.+-..+. -++..+.... -.+++.++... ++..
T Consensus 67 ~~L~~~~~~E~r~~ai~~l~~~~k~-----~~~~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~-p~~~-------- 132 (232)
T 3jxy_A 67 RELWDLPEREFQAAALDIMQKYKKH-----INETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKH-PELI-------- 132 (232)
T ss_dssp HHHHTSSBHHHHHHHHHHHHHTGGG-----CCGGGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHC-GGGG--------
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHccCCChHHHHHhhHHHHHHHHHHC-HHHH--------
Confidence 3344555566777666665432221 22344444444443 3455554443 24455555443 3311
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHHHhhchhhcCChhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHhhH
Q 006201 176 LTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLA 255 (657)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 255 (657)
.+.+..-+. +.+.-+|..|+.++.. +.. . .....++..+...+.+++.-+++++-..|..+....|+.+.
T Consensus 133 ~~~l~~W~~--s~~~w~rR~ai~~~l~---~~~---~--~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~ 202 (232)
T 3jxy_A 133 SAYIPKWIA--SDNIWLQRAAILFQLK---YKQ---K--MDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVW 202 (232)
T ss_dssp GGTHHHHHH--SSCHHHHHHHHHTTTT---CGG---G--CCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHhc--CCchHHHHHHHHHHHH---HHh---C--CCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 223334445 5677788877765422 321 1 11245666666778889999999999999999988888776
Q ss_pred HhHH
Q 006201 256 PYIQ 259 (657)
Q Consensus 256 ~~~~ 259 (657)
+++.
T Consensus 203 ~fl~ 206 (232)
T 3jxy_A 203 EYVQ 206 (232)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 171
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=29.48 E-value=2.4e+02 Score=23.21 Aligned_cols=80 Identities=6% Similarity=0.025 Sum_probs=52.2
Q ss_pred cHHHHHHHHHHHcc--cchHHHHHHHHHHHHHHhhccCCCCCCCCCchh--HHHHHHH-HHHhhccccchhhhHHHHHHH
Q 006201 455 NCQQIISVLLQSMK--DVPNVAEKACGALYFLAQGFEDAISPSSPLTPF--FQEIVQA-LLTVTHREDAGESRLRTAAYE 529 (657)
Q Consensus 455 ~~~~il~~l~~~l~--d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~--~~~i~~~-L~~~l~~~~~~~~~~~~~~~~ 529 (657)
.-...+..+.+.|+ .++.++..|...|..++++|+.. +... -..++.. |.+++......+..++..+++
T Consensus 50 ~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~------fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~ 123 (157)
T 1elk_A 50 GPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHR------FHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLN 123 (157)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHH------HHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHH------HHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHH
Confidence 34677788888886 37899999999999999998641 1111 1234444 445553222113578888888
Q ss_pred HHHHHHHhccc
Q 006201 530 TLNEVVRCSTD 540 (657)
Q Consensus 530 al~~l~~~~~~ 540 (657)
.+.......+.
T Consensus 124 li~~W~~~f~~ 134 (157)
T 1elk_A 124 LIQSWADAFRS 134 (157)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHcCC
Confidence 88888777654
No 172
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=29.04 E-value=73 Score=26.21 Aligned_cols=96 Identities=9% Similarity=0.047 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccHHHHH--HHHHH-HHHHHHHHHhhhcCChhHHHHHHHH
Q 006201 501 FFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVM--QLVPL-IMMELHQTLEAQKLSSDEREKQNEI 577 (657)
Q Consensus 501 ~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~--~l~~~-l~~~l~~~~~~~~~~~~~~~~~~~~ 577 (657)
--...+..|.+-+.... +..+...++..|..+++.+|..|...+. .+++. +.+.+... ......+
T Consensus 50 ~pkeA~ral~KRl~~~~--n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~----------~~~~~~V 117 (152)
T 3rru_A 50 GPKDAVKALKKRISKNY--NHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPR----------YNLPLDI 117 (152)
T ss_dssp HHHHHHHHHHHHHTTCC--BHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGG----------GCCCHHH
T ss_pred cHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCC----------CCCcHHH
Confidence 34566777777776322 2344446899999999999976554332 23332 22222110 0011247
Q ss_pred HHHHHHHHHHHHHHhCCCcchhhHhhHHHHHHHHHH
Q 006201 578 QGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLF 613 (657)
Q Consensus 578 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l 613 (657)
|..+++.|..-+..++... =.+++..++..|
T Consensus 118 k~kil~li~~Wa~~F~~~p-----~l~~i~~~Y~~L 148 (152)
T 3rru_A 118 QNRILNFIKTWSQGFPGGV-----DVSEVKEVYLDL 148 (152)
T ss_dssp HHHHHHHHHHHHTCCSSSC-----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCC-----cchHHHHHHHHH
Confidence 7889999999998887752 224555555543
No 173
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=27.72 E-value=5.3e+02 Score=26.73 Aligned_cols=85 Identities=16% Similarity=0.025 Sum_probs=53.6
Q ss_pred cHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCc-hhHHHHHHHHHHhhccccchhhhHHHHHHHHHH
Q 006201 455 NCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLT-PFFQEIVQALLTVTHREDAGESRLRTAAYETLN 532 (657)
Q Consensus 455 ~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~-~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~ 532 (657)
.++.-+..+...|+. +..+...+...+..+...+.+...+...+. +....+.+.+..++.... ...+|..++.+++
T Consensus 314 if~~~l~~l~~lL~~~~~~~~~kGL~Ll~~ll~~l~~~sl~~~~ld~~~~~~~~q~L~~v~~~~P--~~~lR~~a~~vl~ 391 (596)
T 4f52_E 314 LLQFNMGHIEVFLQRTEESVISKGLELLENSLLRIEDNSLLYQYLEIKSFLTVPQGLVKVMTLCP--IETLRKKSLAMLQ 391 (596)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSSCTTCBCGGGGGSHHHHHHHHHHHHHHHHCS--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchHHHHhHHHHHHHHHHhccCccCChhhhchhhHHHHHHHHHHHHHHCC--cHHHHHHHHHHHH
Confidence 345556666666664 566777888888888877654201111111 223455666666655443 3688999999999
Q ss_pred HHHHhcccc
Q 006201 533 EVVRCSTDE 541 (657)
Q Consensus 533 ~l~~~~~~~ 541 (657)
.++...+..
T Consensus 392 ~~I~~~~~e 400 (596)
T 4f52_E 392 LYINKLDSQ 400 (596)
T ss_dssp HHHHHBCHH
T ss_pred HHHHhCChH
Confidence 999988753
No 174
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=26.24 E-value=2.4e+02 Score=25.46 Aligned_cols=98 Identities=14% Similarity=0.144 Sum_probs=60.3
Q ss_pred CChhHHHHHHHHHhhhcccch-hhhHHHhhhhcccCChHHHHHHHHHHHHhc----CC----CChHHHHHHHHHHHHHHh
Q 006201 51 KPVESRKLAGLILKNALDAKE-QHRKFELVQRWLSLDSSVKAQIKSFILKTL----SS----PAHDARSTASQVVAKVAG 121 (657)
Q Consensus 51 ~~~~~r~~a~~~l~~~i~~~~-~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l----~~----~~~~vr~~aa~~l~~i~~ 121 (657)
.++..+.++..++-|.+.... . ..+- .+.. ++..++..+ .+ ++..+|.++|..+-.++.
T Consensus 102 ~~~~~~ml~lR~l~NlF~~~~~g-------~~l~-~~~~----~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av 169 (253)
T 3gae_A 102 KNITLTMLTVRILVNCFNNENWG-------VKLL-ESNQ----VYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSA 169 (253)
T ss_dssp SSHHHHHHHHHHHHHHTTCTTTH-------HHHH-TSHH----HHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHcccCCchH-------HHHH-hcch----hHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHH
Confidence 478899999999999887532 1 1111 1222 334444443 33 246788888888888777
Q ss_pred hhcCCCCCchHHHHHHHhhcC---------CChhHHHHHHHHHHHHhh
Q 006201 122 IELPHKQWPELIGALLSNIHQ---------LPPHTKQATLETLGYICE 160 (657)
Q Consensus 122 ~~~~~~~~~~l~~~l~~~l~~---------~~~~~~~~~l~~l~~i~~ 160 (657)
.......-.++...+.+.+.. .+++....++.+++.++.
T Consensus 170 ~~~~~~~~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 170 LVTKGNSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp HHHTSCSCTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHhhccchHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 654322235666666666542 256677778888887764
No 175
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=26.02 E-value=2.4e+02 Score=22.22 Aligned_cols=80 Identities=10% Similarity=0.039 Sum_probs=47.5
Q ss_pred HHHHHHHHHHccc-chHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHH
Q 006201 457 QQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVV 535 (657)
Q Consensus 457 ~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~ 535 (657)
...+...++.|.. ...++..+.+++.+ ..+.+.++..+.+.+.... .+-|...+..+..++
T Consensus 6 ~~~l~~~L~~L~~s~~sI~~~s~w~l~~---------------~~~a~~iv~~i~~~l~~~~---~~~KL~~LYLindIl 67 (135)
T 4fu3_A 6 ESALEKKLSELSNSQQSVQTLSLWLIHH---------------RKHAGPIVSVWHRELRKAK---SNRKLTFLYLANDVI 67 (135)
T ss_dssp HHHHHHHHHHCCSSTTHHHHHHHHHHHT---------------GGGHHHHHHHHHHHHHHSC---TTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhcc---cchhHHHHHHHHHHH
Confidence 3444455555654 35566666666653 2466777777777776554 234558899999998
Q ss_pred Hhcccc---cHHHHHHHHHHHH
Q 006201 536 RCSTDE---TAPMVMQLVPLIM 554 (657)
Q Consensus 536 ~~~~~~---~~~~~~~l~~~l~ 554 (657)
..+... +.+.+...++.++
T Consensus 68 ~ns~~~~~~y~~~f~~~l~~~~ 89 (135)
T 4fu3_A 68 QNSKRKGPEFTREFESVLVDAF 89 (135)
T ss_dssp HHHTTTCSHHHHHHHTTHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHH
Confidence 877543 3333444444443
No 176
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=23.86 E-value=2.9e+02 Score=22.31 Aligned_cols=59 Identities=12% Similarity=0.258 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHhcccccH----HHHHHHHHHHHHHHHHHH
Q 006201 500 PFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETA----PMVMQLVPLIMMELHQTL 561 (657)
Q Consensus 500 ~~~~~i~~~L~~~l~~~~~~~~~~~~~~~~al~~l~~~~~~~~~----~~~~~l~~~l~~~l~~~~ 561 (657)
.+...++..+.+.+.... ..-|..++..+.++++..+.... +|...+.+.+.+.+....
T Consensus 38 ~~~~~IV~~~~~~i~k~~---~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~~~ 100 (145)
T 3d9j_A 38 KFYKHVVQSVEKFIQKCK---PEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLY 100 (145)
T ss_dssp GGHHHHHHHHHHHHHHSC---GGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCC---ccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHHH
Confidence 477888888877776654 34455899999999999886221 455555555555555443
No 177
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=21.80 E-value=2.7e+02 Score=22.46 Aligned_cols=84 Identities=15% Similarity=0.152 Sum_probs=50.0
Q ss_pred HHHHHHhhhcCCCCCchHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcccc------ccchhhHhHHHHHHHhccCCCCC
Q 006201 115 VVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSD------AVEQDHVNKILTAVVQGMNASES 188 (657)
Q Consensus 115 ~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~l~~l~~i~~~~~~~------~l~~~~~~~l~~~l~~~l~~~~~ 188 (657)
.|+.+|.... .....++..+.+.+....+..+-.++.++..|++..... .+.......+.+.+..... .
T Consensus 28 ~LT~~a~~~~--~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~~~~---~ 102 (145)
T 3d9j_A 28 QITKAAIKAI--KFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYR---C 102 (145)
T ss_dssp HHHHHHHHTG--GGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHHTS---S
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHHHh---C
Confidence 3444444321 234667777777777778889999999999999987321 2311222334444433333 2
Q ss_pred CHHHHHHHHHHHHHH
Q 006201 189 NNDVRLAATRALYNA 203 (657)
Q Consensus 189 ~~~vr~~al~~l~~~ 203 (657)
.++.|....+.+.-+
T Consensus 103 ~~~~r~kl~rLl~iW 117 (145)
T 3d9j_A 103 PGDDKSKIVRVLNLW 117 (145)
T ss_dssp CGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 367777666666664
No 178
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=21.15 E-value=1.7e+02 Score=28.07 Aligned_cols=98 Identities=17% Similarity=0.213 Sum_probs=61.0
Q ss_pred CCChhHHHHHHHHHhhhcccchhhhHHHhhhhcc-c-CChHHHHHHHHHHHHhcC----C----CChHHHHHHHHHHHHH
Q 006201 50 EKPVESRKLAGLILKNALDAKEQHRKFELVQRWL-S-LDSSVKAQIKSFILKTLS----S----PAHDARSTASQVVAKV 119 (657)
Q Consensus 50 ~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~-~-l~~~~~~~i~~~ll~~l~----~----~~~~vr~~aa~~l~~i 119 (657)
+.++..+.++..++-|.+... .|. . +.. ..++..+++.+. + .+..+|.++|..+-.+
T Consensus 210 ~~~~~n~MltlR~laNlF~~~----------~~g~~ll~~---~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNl 276 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCFNNE----------NWGVKLLES---NQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNY 276 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTTCT----------TTHHHHHTS---HHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHhccCc----------chHHHHHhc---chhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHH
Confidence 457899999999999988653 111 0 111 113444555442 1 2457788888777777
Q ss_pred HhhhcCCCCCchHHHHHHHhhc---------CCChhHHHHHHHHHHHHhh
Q 006201 120 AGIELPHKQWPELIGALLSNIH---------QLPPHTKQATLETLGYICE 160 (657)
Q Consensus 120 ~~~~~~~~~~~~l~~~l~~~l~---------~~~~~~~~~~l~~l~~i~~ 160 (657)
+........-.++...+.+.+. ..+++....++.+++.++.
T Consensus 277 Av~~~~~~~~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 277 SALVTKGNSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp HHHHHHTCSCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 7664321122567777777765 2467778888888888774
No 179
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=20.34 E-value=2.4e+02 Score=27.68 Aligned_cols=98 Identities=17% Similarity=0.221 Sum_probs=61.0
Q ss_pred CCChhHHHHHHHHHhhhcccchhhhHHHhhhhcc-c-CChHHHHHHHHHHHHhcCC--------CChHHHHHHHHHHHHH
Q 006201 50 EKPVESRKLAGLILKNALDAKEQHRKFELVQRWL-S-LDSSVKAQIKSFILKTLSS--------PAHDARSTASQVVAKV 119 (657)
Q Consensus 50 ~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~-~-l~~~~~~~i~~~ll~~l~~--------~~~~vr~~aa~~l~~i 119 (657)
+.++..+.+++.++-|++... .|. . +..+ .++..+++.+.+ .+..+|.++|..+-.+
T Consensus 273 ~~~~an~MltlR~laNlF~~~----------~~g~~ll~~~---~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNl 339 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNE----------NWGVKLLESN---QVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNY 339 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCT----------TTHHHHHTSH---HHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHhcCCc----------chHHHHhhCc---hhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHH
Confidence 457899999999999988642 121 0 1211 234555554431 2457888888877777
Q ss_pred HhhhcCCCCCchHHHHHHHhhc---------CCChhHHHHHHHHHHHHhh
Q 006201 120 AGIELPHKQWPELIGALLSNIH---------QLPPHTKQATLETLGYICE 160 (657)
Q Consensus 120 ~~~~~~~~~~~~l~~~l~~~l~---------~~~~~~~~~~l~~l~~i~~ 160 (657)
+........-.++...+.+.+. ..+++....++.+++.++.
T Consensus 340 Av~~~~~~~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~ 389 (425)
T 3pst_A 340 SALVTKGNSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 389 (425)
T ss_dssp HHHHHHSCSCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 7764321122567777777665 2366777888888888764
Done!