Query 006203
Match_columns 657
No_of_seqs 319 out of 710
Neff 3.1
Searched_HMMs 46136
Date Thu Mar 28 19:52:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006203.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006203hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02444 HMP-P synthase 100.0 4E-258 9E-263 2031.1 56.2 632 8-639 2-639 (642)
2 PRK09284 thiamine biosynthesis 100.0 3E-247 6E-252 1946.2 52.6 522 87-634 16-607 (607)
3 COG0422 ThiC Thiamine biosynth 100.0 2E-213 3E-218 1634.0 40.7 426 160-586 2-429 (432)
4 TIGR00190 thiC thiamine biosyn 100.0 5E-207 1E-211 1596.5 43.1 420 161-585 1-422 (423)
5 PRK13352 thiamine biosynthesis 100.0 2E-205 4E-210 1589.7 43.7 421 161-587 1-426 (431)
6 PF01964 ThiC: ThiC family; I 100.0 7E-205 1E-209 1581.4 37.6 418 162-584 1-420 (420)
7 PF13667 ThiC-associated: ThiC 99.9 2.1E-24 4.7E-29 185.1 2.3 65 88-156 1-78 (80)
8 cd00381 IMPDH IMPDH: The catal 94.0 0.66 1.4E-05 49.0 12.0 75 223-322 85-165 (325)
9 cd00945 Aldolase_Class_I Class 92.8 4 8.7E-05 37.6 13.7 167 235-450 11-179 (201)
10 cd01299 Met_dep_hydrolase_A Me 91.3 5 0.00011 40.9 13.7 175 241-419 46-268 (342)
11 TIGR01306 GMP_reduct_2 guanosi 89.1 5.5 0.00012 42.9 12.3 152 170-386 44-210 (321)
12 PTZ00242 protein tyrosine phos 88.8 7.8 0.00017 37.4 12.0 133 234-418 27-166 (166)
13 PRK04165 acetyl-CoA decarbonyl 88.4 11 0.00023 42.5 14.4 171 296-482 101-296 (450)
14 TIGR03234 OH-pyruv-isom hydrox 88.1 2.5 5.4E-05 41.6 8.4 80 360-443 83-170 (254)
15 COG0422 ThiC Thiamine biosynth 87.8 0.26 5.6E-06 54.2 1.6 173 401-587 204-425 (432)
16 cd00945 Aldolase_Class_I Class 87.4 3.2 7E-05 38.2 8.2 78 234-322 62-151 (201)
17 PRK11165 diaminopimelate decar 87.3 25 0.00054 38.4 16.1 206 173-425 14-272 (420)
18 PF01261 AP_endonuc_2: Xylose 87.3 19 0.00042 33.1 13.2 110 310-443 37-157 (213)
19 cd06828 PLPDE_III_DapDC Type I 86.4 19 0.00042 37.5 14.2 63 359-425 186-259 (373)
20 cd00019 AP2Ec AP endonuclease 86.0 5.7 0.00012 39.8 9.7 78 361-441 85-166 (279)
21 PRK05458 guanosine 5'-monophos 85.5 9.7 0.00021 41.0 11.7 109 170-322 47-170 (326)
22 PRK04452 acetyl-CoA decarbonyl 85.3 10 0.00023 40.8 11.8 119 304-438 79-230 (319)
23 TIGR03099 dCO2ase_PEP1 pyridox 85.2 50 0.0011 35.2 16.7 171 177-383 16-235 (398)
24 cd01297 D-aminoacylase D-amino 84.9 16 0.00034 39.3 13.0 28 261-288 122-150 (415)
25 PLN02274 inosine-5'-monophosph 84.8 7.6 0.00016 43.9 11.0 81 217-322 233-321 (505)
26 cd00959 DeoC 2-deoxyribose-5-p 83.5 4 8.7E-05 40.0 7.3 113 221-343 53-182 (203)
27 PRK05581 ribulose-phosphate 3- 82.4 49 0.0011 32.0 14.7 179 232-454 11-202 (220)
28 PF01261 AP_endonuc_2: Xylose 81.3 17 0.00037 33.4 10.1 77 360-437 26-110 (213)
29 cd00958 DhnA Class I fructose- 80.8 5.5 0.00012 39.2 7.2 96 218-321 57-164 (235)
30 TIGR01949 AroFGH_arch predicte 80.8 13 0.00028 37.7 10.0 75 237-323 155-230 (258)
31 PRK08227 autoinducer 2 aldolas 80.5 6 0.00013 41.5 7.6 144 281-482 27-177 (264)
32 cd06831 PLPDE_III_ODC_like_AZI 80.4 73 0.0016 34.7 16.0 95 296-423 146-248 (394)
33 cd02810 DHOD_DHPD_FMN Dihydroo 80.2 12 0.00027 37.9 9.6 85 225-324 103-200 (289)
34 PRK09989 hypothetical protein; 80.2 9.1 0.0002 38.1 8.5 77 360-440 84-168 (258)
35 TIGR03128 RuMP_HxlA 3-hexulose 79.9 30 0.00065 33.3 11.6 118 305-485 68-188 (206)
36 TIGR01496 DHPS dihydropteroate 79.8 8.8 0.00019 39.5 8.5 182 295-480 18-239 (257)
37 cd00739 DHPS DHPS subgroup of 79.6 7.9 0.00017 39.9 8.1 182 295-480 19-241 (257)
38 cd00245 Glm_e Coenzyme B12-dep 79.0 2.9 6.2E-05 46.7 5.0 279 235-539 26-340 (428)
39 PRK07535 methyltetrahydrofolat 78.6 28 0.0006 36.2 11.6 126 294-428 19-167 (261)
40 PRK11613 folP dihydropteroate 77.5 1E+02 0.0023 32.8 16.6 24 234-258 35-58 (282)
41 TIGR02151 IPP_isom_2 isopenten 77.4 24 0.00053 37.5 11.1 136 223-386 116-266 (333)
42 PRK06843 inosine 5-monophospha 77.3 50 0.0011 36.9 13.8 80 222-328 143-228 (404)
43 PRK09722 allulose-6-phosphate 76.4 53 0.0012 33.9 12.8 181 220-450 2-197 (229)
44 PTZ00393 protein tyrosine phos 76.0 42 0.00091 35.3 12.1 115 244-405 110-227 (241)
45 cd04743 NPD_PKS 2-Nitropropane 75.5 5.8 0.00012 42.7 5.9 106 363-482 71-208 (320)
46 PRK09061 D-glutamate deacylase 75.4 78 0.0017 35.6 14.8 114 298-460 164-286 (509)
47 PRK09875 putative hydrolase; P 75.2 1.1E+02 0.0023 32.6 15.0 88 234-323 31-122 (292)
48 cd02811 IDI-2_FMN Isopentenyl- 74.5 59 0.0013 34.6 13.0 137 223-386 115-267 (326)
49 PRK05437 isopentenyl pyrophosp 74.4 32 0.0007 37.0 11.2 168 172-386 78-273 (352)
50 cd02803 OYE_like_FMN_family Ol 74.3 56 0.0012 33.7 12.5 156 236-419 75-246 (327)
51 PRK13404 dihydropyrimidinase; 74.1 36 0.00077 37.7 11.7 92 298-419 133-239 (477)
52 TIGR01163 rpe ribulose-phospha 74.0 84 0.0018 30.0 12.9 180 232-454 6-197 (210)
53 cd04740 DHOD_1B_like Dihydroor 73.9 18 0.00039 37.0 8.8 83 298-418 100-183 (296)
54 cd00429 RPE Ribulose-5-phospha 73.7 84 0.0018 29.9 15.1 78 232-324 7-91 (211)
55 PF01408 GFO_IDH_MocA: Oxidore 73.0 8.9 0.00019 33.1 5.5 91 334-447 27-117 (120)
56 COG1082 IolE Sugar phosphate i 72.8 29 0.00063 34.0 9.6 158 240-428 18-184 (274)
57 PRK09989 hypothetical protein; 71.9 37 0.0008 33.9 10.3 120 241-385 19-147 (258)
58 PTZ00170 D-ribulose-5-phosphat 71.2 7.2 0.00016 39.3 5.2 91 218-326 4-101 (228)
59 TIGR02318 phosphono_phnM phosp 71.0 14 0.00031 39.6 7.6 86 359-459 207-304 (376)
60 TIGR03006 pepcterm_polyde poly 70.5 15 0.00033 38.1 7.5 114 355-493 22-151 (265)
61 cd00958 DhnA Class I fructose- 70.5 30 0.00065 34.2 9.2 75 237-323 142-217 (235)
62 PRK08883 ribulose-phosphate 3- 70.1 77 0.0017 32.2 12.1 176 230-451 8-196 (220)
63 PRK07226 fructose-bisphosphate 69.9 25 0.00055 36.0 8.8 161 278-454 21-207 (267)
64 cd03315 MLE_like Muconate lact 69.8 1.3E+02 0.0028 30.4 16.2 142 220-420 74-237 (265)
65 TIGR00693 thiE thiamine-phosph 69.8 40 0.00087 32.1 9.6 122 300-453 13-162 (196)
66 cd00950 DHDPS Dihydrodipicolin 69.5 56 0.0012 33.3 11.1 109 295-447 16-130 (284)
67 cd02931 ER_like_FMN Enoate red 69.5 30 0.00065 37.5 9.7 119 237-368 82-213 (382)
68 cd00537 MTHFR Methylenetetrahy 69.3 8.6 0.00019 39.1 5.3 56 230-323 140-195 (274)
69 TIGR03151 enACPred_II putative 69.3 44 0.00095 35.4 10.6 117 363-502 76-210 (307)
70 PRK07028 bifunctional hexulose 68.9 79 0.0017 34.6 12.8 171 231-485 10-192 (430)
71 PRK12677 xylose isomerase; Pro 68.4 15 0.00032 40.1 7.2 121 241-381 35-179 (384)
72 PTZ00314 inosine-5'-monophosph 67.5 34 0.00074 38.6 9.9 78 220-322 229-314 (495)
73 TIGR00542 hxl6Piso_put hexulos 65.8 13 0.00029 37.3 5.8 79 241-321 20-115 (279)
74 TIGR00587 nfo apurinic endonuc 65.8 7.2 0.00016 39.7 4.0 143 241-386 15-185 (274)
75 PRK08649 inosine 5-monophospha 65.7 85 0.0018 34.5 12.1 80 243-322 64-163 (368)
76 COG0157 NadC Nicotinate-nucleo 65.4 9.1 0.0002 40.9 4.7 66 240-321 198-263 (280)
77 TIGR00542 hxl6Piso_put hexulos 65.2 52 0.0011 33.2 9.8 79 360-440 93-172 (279)
78 PRK07226 fructose-bisphosphate 65.1 30 0.00066 35.4 8.3 101 238-350 160-262 (267)
79 TIGR00612 ispG_gcpE 1-hydroxy- 64.5 40 0.00087 37.2 9.3 199 229-500 26-243 (346)
80 cd03316 MR_like Mandelate race 64.5 1.5E+02 0.0032 31.2 13.2 151 218-423 124-300 (357)
81 cd00127 DSPc Dual specificity 64.4 22 0.00048 31.4 6.3 94 248-372 25-120 (139)
82 PRK09206 pyruvate kinase; Prov 64.3 37 0.00081 38.5 9.4 95 294-419 167-276 (470)
83 TIGR00284 dihydropteroate synt 64.2 2.1E+02 0.0046 32.9 15.3 46 211-260 141-187 (499)
84 PRK05567 inosine 5'-monophosph 64.1 61 0.0013 36.3 10.9 75 220-319 216-296 (486)
85 TIGR01302 IMP_dehydrog inosine 64.1 84 0.0018 34.9 11.9 146 220-459 212-367 (450)
86 TIGR01503 MthylAspMut_E methyl 63.9 37 0.0008 38.8 9.2 185 349-551 175-392 (480)
87 PRK08323 phenylhydantoinase; V 63.7 2E+02 0.0044 31.0 14.4 67 244-321 76-149 (459)
88 TIGR00126 deoC deoxyribose-pho 63.1 22 0.00048 36.1 6.7 117 220-343 53-183 (211)
89 PLN02334 ribulose-phosphate 3- 63.0 22 0.00047 35.5 6.6 78 230-322 13-97 (229)
90 COG1082 IolE Sugar phosphate i 61.7 60 0.0013 31.9 9.3 68 362-430 46-113 (274)
91 PRK12677 xylose isomerase; Pro 61.4 26 0.00055 38.3 7.3 82 359-441 112-204 (384)
92 COG1830 FbaB DhnA-type fructos 61.2 28 0.00062 37.0 7.3 135 300-481 43-184 (265)
93 PRK13209 L-xylulose 5-phosphat 61.0 46 0.00099 33.4 8.5 81 360-442 98-179 (283)
94 TIGR03586 PseI pseudaminic aci 60.6 1.2E+02 0.0027 32.9 12.1 126 298-438 15-157 (327)
95 cd02809 alpha_hydroxyacid_oxid 60.5 2.2E+02 0.0048 29.8 16.0 175 235-485 79-258 (299)
96 smart00518 AP2Ec AP endonuclea 60.1 1.9E+02 0.0041 28.9 12.9 114 302-442 12-129 (273)
97 PF01487 DHquinase_I: Type I 3 59.3 29 0.00063 34.3 6.7 162 233-420 6-180 (224)
98 PRK07565 dihydroorotate dehydr 59.1 58 0.0013 34.5 9.3 85 223-324 104-201 (334)
99 PRK07094 biotin synthase; Prov 59.1 1.4E+02 0.003 31.0 11.8 28 296-323 69-96 (323)
100 PTZ00372 endonuclease 4-like p 59.0 4.8 0.0001 44.7 1.4 154 243-401 147-329 (413)
101 PRK12595 bifunctional 3-deoxy- 58.8 78 0.0017 34.6 10.3 116 298-447 130-266 (360)
102 PRK09997 hydroxypyruvate isome 58.4 58 0.0013 32.5 8.7 78 360-440 84-168 (258)
103 PRK15446 phosphonate metabolis 58.3 63 0.0014 34.8 9.5 56 355-419 208-273 (383)
104 TIGR00284 dihydropteroate synt 58.1 1E+02 0.0022 35.4 11.5 127 243-418 221-348 (499)
105 TIGR03572 WbuZ glycosyl amidat 57.8 52 0.0011 32.5 8.2 110 242-384 88-207 (232)
106 PRK01060 endonuclease IV; Prov 57.0 18 0.00038 36.2 4.8 79 243-323 18-112 (281)
107 COG1412 Uncharacterized protei 56.2 12 0.00025 36.1 3.3 16 405-420 108-123 (136)
108 TIGR01928 menC_lowGC/arch o-su 55.9 2.7E+02 0.0059 29.4 13.8 139 298-439 132-296 (324)
109 PTZ00293 thymidine kinase; Pro 55.5 26 0.00057 35.8 5.8 89 300-421 19-110 (211)
110 TIGR02631 xylA_Arthro xylose i 54.7 1.5E+02 0.0033 32.6 11.7 158 240-427 35-221 (382)
111 TIGR01761 thiaz-red thiazoliny 54.7 32 0.00069 37.2 6.6 34 333-368 28-61 (343)
112 cd00959 DeoC 2-deoxyribose-5-p 54.5 2.2E+02 0.0049 28.0 15.1 167 236-454 15-185 (203)
113 cd01317 DHOase_IIa Dihydroorot 54.5 33 0.00071 36.4 6.6 161 243-429 38-225 (374)
114 cd01302 Cyclic_amidohydrolases 54.1 70 0.0015 33.6 8.9 148 243-428 30-185 (337)
115 PLN02520 bifunctional 3-dehydr 54.1 67 0.0014 36.5 9.3 92 220-321 22-118 (529)
116 cd00530 PTE Phosphotriesterase 53.6 2.5E+02 0.0055 28.3 15.0 78 234-316 29-113 (293)
117 cd01297 D-aminoacylase D-amino 53.5 2.2E+02 0.0048 30.7 12.7 203 243-491 72-288 (415)
118 cd03323 D-glucarate_dehydratas 53.4 1.5E+02 0.0032 32.5 11.4 121 298-427 168-325 (395)
119 cd04724 Tryptophan_synthase_al 52.8 1.2E+02 0.0025 31.0 9.9 188 233-478 10-217 (242)
120 cd03174 DRE_TIM_metallolyase D 52.5 1.1E+02 0.0024 30.2 9.5 140 295-446 14-193 (265)
121 cd01306 PhnM PhnM is believed 52.0 20 0.00043 38.4 4.5 110 296-419 91-222 (325)
122 cd00423 Pterin_binding Pterin 51.7 1.4E+02 0.0031 30.5 10.4 141 295-440 19-191 (258)
123 PRK09856 fructoselysine 3-epim 51.6 98 0.0021 30.8 9.0 78 360-442 89-173 (275)
124 TIGR02631 xylA_Arthro xylose i 51.4 27 0.00058 38.2 5.5 142 298-440 30-204 (382)
125 cd00740 MeTr MeTr subgroup of 51.2 1.1E+02 0.0024 31.7 9.6 121 295-428 21-171 (252)
126 cd01305 archeal_chlorohydrolas 50.8 2.7E+02 0.0059 27.9 13.7 102 302-442 127-242 (263)
127 TIGR01361 DAHP_synth_Bsub phos 50.8 1.1E+02 0.0023 32.0 9.4 158 298-489 37-238 (260)
128 PRK06886 hypothetical protein; 50.5 1.3E+02 0.0029 32.3 10.4 96 279-379 46-180 (329)
129 PRK08745 ribulose-phosphate 3- 50.0 3.1E+02 0.0066 28.2 14.0 184 222-454 5-203 (223)
130 PRK09237 dihydroorotase; Provi 49.5 26 0.00056 36.9 4.9 167 244-431 75-255 (380)
131 cd03316 MR_like Mandelate race 49.3 1.5E+02 0.0031 31.2 10.2 26 298-323 139-164 (357)
132 PRK06106 nicotinate-nucleotide 48.9 32 0.0007 36.6 5.5 63 241-321 205-267 (281)
133 PRK08005 epimerase; Validated 48.9 33 0.00072 34.9 5.4 122 222-379 2-135 (210)
134 PRK05286 dihydroorotate dehydr 48.7 78 0.0017 33.9 8.3 105 296-425 221-329 (344)
135 PF01207 Dus: Dihydrouridine s 48.5 20 0.00044 37.6 3.9 51 263-322 110-160 (309)
136 cd02801 DUS_like_FMN Dihydrour 48.2 67 0.0015 31.2 7.1 23 300-322 138-160 (231)
137 TIGR02478 6PF1K_euk 6-phosphof 48.1 22 0.00047 42.4 4.5 110 291-414 9-138 (745)
138 PRK00507 deoxyribose-phosphate 47.9 42 0.00092 34.2 5.9 120 218-343 55-187 (221)
139 COG2513 PrpB PEP phosphonomuta 47.9 39 0.00084 36.5 5.8 120 236-373 165-287 (289)
140 PF00834 Ribul_P_3_epim: Ribul 47.9 45 0.00099 33.5 6.1 169 222-431 1-181 (201)
141 PRK01207 methionine synthase; 47.9 16 0.00035 39.8 3.1 91 301-423 38-129 (343)
142 smart00195 DSPc Dual specifici 47.6 1.1E+02 0.0025 27.3 8.0 112 245-402 21-134 (138)
143 TIGR02033 D-hydantoinase D-hyd 47.2 3.9E+02 0.0085 28.7 13.7 18 243-260 77-94 (454)
144 PRK09856 fructoselysine 3-epim 46.8 3E+02 0.0066 27.4 11.6 64 362-426 48-115 (275)
145 TIGR03234 OH-pyruv-isom hydrox 46.7 1.4E+02 0.003 29.6 9.2 64 362-427 40-110 (254)
146 PRK06978 nicotinate-nucleotide 46.5 40 0.00087 36.2 5.7 64 240-321 215-278 (294)
147 PRK06354 pyruvate kinase; Prov 46.2 1.2E+02 0.0025 35.6 9.7 97 294-419 173-282 (590)
148 PRK09997 hydroxypyruvate isome 46.2 2.2E+02 0.0048 28.5 10.6 86 302-426 17-110 (258)
149 PRK13813 orotidine 5'-phosphat 46.1 96 0.0021 30.3 7.9 59 307-373 74-138 (215)
150 cd03319 L-Ala-DL-Glu_epimerase 45.9 3.7E+02 0.008 28.0 16.2 87 219-317 122-208 (316)
151 PRK10415 tRNA-dihydrouridine s 45.1 85 0.0018 33.4 7.9 23 300-322 149-171 (321)
152 cd04739 DHOD_like Dihydroorota 44.9 58 0.0012 34.6 6.6 175 235-469 110-302 (325)
153 PRK09016 quinolinate phosphori 44.7 44 0.00094 36.0 5.7 64 240-321 218-281 (296)
154 TIGR01859 fruc_bis_ald_ fructo 44.5 15 0.00032 38.6 2.2 124 240-404 87-223 (282)
155 TIGR03470 HpnH hopanoid biosyn 44.2 1.3E+02 0.0029 31.7 9.1 130 295-451 57-199 (318)
156 cd04738 DHOD_2_like Dihydrooro 44.2 81 0.0018 33.4 7.6 87 296-402 212-300 (327)
157 PRK13210 putative L-xylulose 5 44.2 1.8E+02 0.0039 29.0 9.6 91 360-457 93-184 (284)
158 PRK13207 ureC urease subunit a 43.8 87 0.0019 36.6 8.2 103 243-400 144-259 (568)
159 cd02932 OYE_YqiM_FMN Old yello 43.6 1.5E+02 0.0032 31.4 9.3 81 236-322 153-263 (336)
160 smart00518 AP2Ec AP endonuclea 43.3 11 0.00023 37.5 1.0 83 241-324 14-108 (273)
161 PRK03906 mannonate dehydratase 42.9 1.7E+02 0.0037 32.5 10.0 134 279-420 63-233 (385)
162 cd00288 Pyruvate_Kinase Pyruva 42.7 1.4E+02 0.0031 34.0 9.5 97 294-419 169-277 (480)
163 TIGR03569 NeuB_NnaB N-acetylne 42.6 73 0.0016 34.5 7.0 78 234-321 13-97 (329)
164 cd00377 ICL_PEPM Members of th 42.6 41 0.0009 34.3 5.0 76 234-326 157-232 (243)
165 KOG3111 D-ribulose-5-phosphate 42.0 63 0.0014 33.7 6.1 196 232-508 15-220 (224)
166 TIGR01949 AroFGH_arch predicte 42.0 98 0.0021 31.5 7.5 114 278-419 18-141 (258)
167 PLN02819 lysine-ketoglutarate 42.0 37 0.0008 42.0 5.2 81 358-465 633-714 (1042)
168 cd04733 OYE_like_2_FMN Old yel 41.2 3.4E+02 0.0074 28.8 11.6 160 235-420 79-254 (338)
169 PRK08417 dihydroorotase; Provi 40.3 70 0.0015 34.3 6.5 60 395-497 176-238 (386)
170 PRK05826 pyruvate kinase; Prov 40.2 92 0.002 35.3 7.6 94 295-419 169-277 (465)
171 TIGR02319 CPEP_Pphonmut carbox 40.1 1.1E+02 0.0024 32.8 7.8 81 234-329 162-242 (294)
172 PRK06852 aldolase; Validated 40.1 39 0.00084 36.4 4.5 180 301-532 60-252 (304)
173 PF00265 TK: Thymidine kinase; 40.0 5 0.00011 39.1 -1.9 92 300-421 16-110 (176)
174 cd06836 PLPDE_III_ODC_DapDC_li 39.8 5.1E+02 0.011 27.9 12.9 74 186-273 9-93 (379)
175 PRK00366 ispG 4-hydroxy-3-meth 39.7 2.1E+02 0.0045 32.0 9.9 205 214-485 21-243 (360)
176 PRK05848 nicotinate-nucleotide 39.7 50 0.0011 34.9 5.1 68 239-321 191-258 (273)
177 PRK13523 NADPH dehydrogenase N 39.6 3.4E+02 0.0073 29.3 11.3 159 235-423 78-249 (337)
178 TIGR02026 BchE magnesium-proto 39.2 2.9E+02 0.0063 31.1 11.2 134 292-441 217-366 (497)
179 PRK08185 hypothetical protein; 39.1 36 0.00079 36.1 4.1 32 239-270 80-115 (283)
180 PRK12361 hypothetical protein; 39.1 89 0.0019 35.2 7.3 121 239-402 112-232 (547)
181 PRK05927 hypothetical protein; 38.6 31 0.00068 37.2 3.6 49 184-256 255-303 (350)
182 PF13714 PEP_mutase: Phosphoen 38.3 53 0.0011 33.9 5.0 77 233-328 151-227 (238)
183 TIGR01856 hisJ_fam histidinol 38.2 32 0.0007 34.8 3.4 60 357-426 181-241 (253)
184 PF02126 PTE: Phosphotriestera 38.0 10 0.00022 40.4 -0.2 90 235-326 36-129 (308)
185 PF00728 Glyco_hydro_20: Glyco 38.0 28 0.0006 36.0 3.0 27 296-322 14-40 (351)
186 TIGR00737 nifR3_yhdG putative 37.9 98 0.0021 32.5 6.9 20 235-254 73-92 (319)
187 PRK07315 fructose-bisphosphate 37.9 25 0.00055 37.2 2.7 73 240-322 89-175 (293)
188 PRK06559 nicotinate-nucleotide 37.8 66 0.0014 34.5 5.8 63 241-321 208-270 (290)
189 PRK03170 dihydrodipicolinate s 37.8 4.7E+02 0.01 27.0 11.6 104 295-442 17-124 (292)
190 PLN02537 diaminopimelate decar 37.6 5.7E+02 0.012 27.7 13.1 96 296-424 162-269 (410)
191 cd04730 NPD_like 2-Nitropropan 37.4 4.1E+02 0.0088 26.0 12.8 85 405-501 113-204 (236)
192 PLN02540 methylenetetrahydrofo 37.1 4E+02 0.0088 31.4 12.1 125 234-437 153-280 (565)
193 PRK10076 pyruvate formate lyas 37.0 57 0.0012 33.0 4.9 56 361-430 19-83 (213)
194 cd02803 OYE_like_FMN_family Ol 36.9 1.5E+02 0.0033 30.7 8.1 78 297-403 225-302 (327)
195 cd04732 HisA HisA. Phosphorib 36.8 28 0.00062 34.0 2.7 112 240-385 85-201 (234)
196 PRK01130 N-acetylmannosamine-6 36.7 1.4E+02 0.0031 29.4 7.5 62 241-320 79-146 (221)
197 COG0331 FabD (acyl-carrier-pro 36.6 1.6E+02 0.0034 31.8 8.3 111 182-317 136-259 (310)
198 PF12244 DUF3606: Protein of u 36.2 36 0.00079 28.1 2.8 23 174-196 21-43 (57)
199 COG0269 SgbH 3-hexulose-6-phos 36.0 3.2E+02 0.007 28.7 10.0 113 243-399 73-206 (217)
200 PRK06801 hypothetical protein; 35.9 28 0.00061 36.9 2.7 80 240-322 87-178 (286)
201 cd08616 PI-PLCXD1c Catalytic d 35.7 1.6E+02 0.0035 31.0 8.1 93 305-420 63-173 (290)
202 TIGR02482 PFKA_ATP 6-phosphofr 35.6 39 0.00085 36.0 3.7 70 302-376 18-93 (301)
203 PF07302 AroM: AroM protein; 35.6 53 0.0012 34.0 4.5 88 243-330 80-196 (221)
204 PF01729 QRPTase_C: Quinolinat 35.5 31 0.00067 33.9 2.7 63 241-319 91-154 (169)
205 PRK15072 bifunctional D-altron 35.2 2.8E+02 0.0061 30.3 10.1 65 356-420 238-314 (404)
206 PRK11320 prpB 2-methylisocitra 35.2 1.9E+02 0.0041 31.0 8.6 77 235-326 164-240 (292)
207 PLN02716 nicotinate-nucleotide 35.2 74 0.0016 34.5 5.6 65 240-321 213-291 (308)
208 cd06660 Aldo_ket_red Aldo-keto 35.2 4.7E+02 0.01 26.1 12.8 144 235-388 27-210 (285)
209 PRK07535 methyltetrahydrofolat 35.1 4.4E+02 0.0096 27.6 11.1 150 234-419 22-194 (261)
210 PRK07896 nicotinate-nucleotide 35.0 1.1E+02 0.0024 32.8 6.8 63 242-321 211-275 (289)
211 PRK08227 autoinducer 2 aldolas 35.0 87 0.0019 33.1 6.0 100 243-357 164-264 (264)
212 PRK02412 aroD 3-dehydroquinate 35.0 95 0.0021 31.9 6.2 99 213-321 9-117 (253)
213 PRK06543 nicotinate-nucleotide 34.8 68 0.0015 34.2 5.3 63 241-321 204-266 (281)
214 cd04730 NPD_like 2-Nitropropan 34.7 4.5E+02 0.0097 25.7 10.5 62 239-321 69-130 (236)
215 cd06839 PLPDE_III_Btrk_like Ty 34.4 5.8E+02 0.013 27.0 13.1 26 297-322 151-177 (382)
216 PRK02227 hypothetical protein; 34.3 1.4E+02 0.003 31.6 7.2 155 240-421 10-187 (238)
217 cd04724 Tryptophan_synthase_al 34.3 3.7E+02 0.008 27.4 10.2 59 357-432 86-147 (242)
218 PRK07028 bifunctional hexulose 34.1 4E+02 0.0087 29.3 11.1 68 242-324 73-142 (430)
219 PRK12858 tagatose 1,6-diphosph 33.8 2.9E+02 0.0063 30.2 9.8 155 298-455 47-253 (340)
220 cd02929 TMADH_HD_FMN Trimethyl 33.6 2E+02 0.0043 31.3 8.6 122 236-370 81-214 (370)
221 cd00331 IGPS Indole-3-glycerol 33.6 1.1E+02 0.0024 30.0 6.2 79 237-317 31-125 (217)
222 PRK13206 ureC urease subunit a 33.6 1.4E+02 0.0031 35.0 7.9 78 304-426 210-289 (573)
223 PRK07572 cytosine deaminase; V 33.2 1.8E+02 0.004 31.5 8.3 44 360-416 190-235 (426)
224 PRK07328 histidinol-phosphatas 33.1 1E+02 0.0022 31.6 6.0 136 255-428 87-235 (269)
225 PRK00957 methionine synthase; 33.1 79 0.0017 32.8 5.3 176 300-489 36-227 (305)
226 cd03318 MLE Muconate Lactonizi 32.6 6.3E+02 0.014 26.9 11.9 120 217-380 160-296 (365)
227 TIGR00288 conserved hypothetic 32.4 1.6E+02 0.0034 29.4 6.9 41 382-422 79-137 (160)
228 COG2070 Dioxygenases related t 32.3 5.6E+02 0.012 27.9 11.6 114 356-483 89-220 (336)
229 TIGR03128 RuMP_HxlA 3-hexulose 32.1 94 0.002 30.0 5.4 65 243-323 69-136 (206)
230 TIGR02317 prpB methylisocitrat 32.0 39 0.00084 35.9 2.9 80 235-329 159-238 (285)
231 cd04734 OYE_like_3_FMN Old yel 31.9 4.4E+02 0.0096 28.3 10.7 135 300-454 141-296 (343)
232 cd06568 GH20_SpHex_like A subg 31.8 28 0.00061 37.1 1.9 23 403-425 77-101 (329)
233 TIGR03826 YvyF flagellar opero 31.7 57 0.0012 31.6 3.7 33 175-207 48-80 (137)
234 cd04722 TIM_phosphate_binding 31.5 3.9E+02 0.0085 24.1 10.3 132 300-484 12-144 (200)
235 PF03102 NeuB: NeuB family; I 31.4 37 0.00079 35.2 2.6 185 243-480 2-198 (241)
236 PRK13317 pantothenate kinase; 30.9 2.5E+02 0.0054 29.6 8.6 128 331-474 116-273 (277)
237 PRK13308 ureC urease subunit a 30.8 2E+02 0.0044 33.8 8.5 120 244-426 149-283 (569)
238 TIGR01224 hutI imidazoloneprop 30.5 3.2E+02 0.007 28.6 9.3 107 295-434 192-305 (377)
239 TIGR01048 lysA diaminopimelate 30.4 7.2E+02 0.016 26.8 15.2 28 296-323 170-198 (417)
240 PF02581 TMP-TENI: Thiamine mo 30.3 89 0.0019 30.0 4.8 55 297-381 9-63 (180)
241 TIGR00737 nifR3_yhdG putative 30.1 6.7E+02 0.015 26.4 15.1 147 297-480 72-226 (319)
242 cd00502 DHQase_I Type I 3-dehy 30.0 1.5E+02 0.0033 29.5 6.5 67 250-322 24-98 (225)
243 TIGR00347 bioD dethiobiotin sy 29.7 2.3E+02 0.0049 26.2 7.2 64 411-483 98-164 (166)
244 KOG1282 Serine carboxypeptidas 29.7 55 0.0012 37.1 3.8 32 417-448 420-452 (454)
245 TIGR03855 NAD_NadX aspartate d 29.6 62 0.0013 33.2 3.8 176 335-556 4-185 (229)
246 PRK07107 inosine 5-monophospha 29.6 86 0.0019 35.8 5.3 63 238-319 242-311 (502)
247 cd07197 nitrilase Nitrilase su 29.6 1.4E+02 0.003 28.9 6.0 67 300-382 18-84 (253)
248 PRK05632 phosphate acetyltrans 29.5 2E+02 0.0043 33.8 8.3 165 359-551 407-611 (684)
249 PRK06267 hypothetical protein; 29.4 7.5E+02 0.016 26.7 12.6 33 484-516 210-242 (350)
250 TIGR01037 pyrD_sub1_fam dihydr 29.4 2.1E+02 0.0045 29.5 7.6 27 298-324 167-193 (300)
251 TIGR01093 aroD 3-dehydroquinat 29.2 3.8E+02 0.0083 26.9 9.2 152 233-402 8-169 (228)
252 cd02742 GH20_hexosaminidase Be 29.2 35 0.00076 35.6 2.0 27 296-322 12-38 (303)
253 PF03060 NMO: Nitronate monoox 29.2 49 0.0011 35.1 3.1 105 394-514 126-247 (330)
254 COG1387 HIS2 Histidinol phosph 29.1 4.3E+02 0.0094 27.0 9.7 94 295-427 106-199 (237)
255 cd01948 EAL EAL domain. This d 28.7 1.3E+02 0.0029 28.5 5.6 60 363-422 134-210 (240)
256 TIGR02320 PEP_mutase phosphoen 28.6 1.6E+02 0.0034 31.4 6.6 77 235-327 167-247 (285)
257 PRK08385 nicotinate-nucleotide 28.2 76 0.0017 33.7 4.3 69 239-321 191-260 (278)
258 TIGR00676 fadh2 5,10-methylene 28.1 7E+02 0.015 25.9 12.6 53 233-323 140-192 (272)
259 PF01180 DHO_dh: Dihydroorotat 27.8 1.3E+02 0.0027 31.2 5.8 91 219-318 95-194 (295)
260 PRK09061 D-glutamate deacylase 27.7 3.3E+02 0.0071 30.8 9.3 91 297-425 196-286 (509)
261 PRK08255 salicylyl-CoA 5-hydro 27.5 3.1E+02 0.0068 32.5 9.5 108 293-424 537-662 (765)
262 TIGR02967 guan_deamin guanine 27.5 3.2E+02 0.0068 29.1 8.7 98 295-419 181-293 (401)
263 cd01482 vWA_collagen_alphaI-XI 27.3 2.1E+02 0.0046 26.5 6.6 23 300-322 117-139 (164)
264 cd03315 MLE_like Muconate lact 27.1 6.7E+02 0.014 25.4 11.3 109 237-381 113-238 (265)
265 PRK06740 histidinol-phosphatas 27.0 1.3E+02 0.0028 32.3 5.8 86 233-324 121-225 (331)
266 cd04740 DHOD_1B_like Dihydroor 26.9 2.3E+02 0.005 29.1 7.4 77 235-324 100-190 (296)
267 PF10515 APP_amyloid: beta-amy 26.4 12 0.00027 31.2 -1.4 18 347-364 35-52 (52)
268 cd06570 GH20_chitobiase-like_1 26.3 53 0.0011 35.0 2.8 25 297-321 15-39 (311)
269 cd02810 DHOD_DHPD_FMN Dihydroo 26.2 2.3E+02 0.0049 29.0 7.1 82 298-419 109-194 (289)
270 cd04726 KGPDC_HPS 3-Keto-L-gul 26.2 5.8E+02 0.013 24.3 9.5 17 306-322 70-86 (202)
271 TIGR02826 RNR_activ_nrdG3 anae 26.0 1.5E+02 0.0033 28.4 5.5 70 362-455 47-121 (147)
272 cd00363 PFK Phosphofructokinas 26.0 78 0.0017 34.1 4.0 74 302-380 19-100 (338)
273 cd01298 ATZ_TRZ_like TRZ/ATZ f 26.0 2.3E+02 0.005 29.5 7.3 19 242-260 106-124 (411)
274 COG0036 Rpe Pentose-5-phosphat 25.8 1.7E+02 0.0036 30.7 6.1 181 222-451 5-198 (220)
275 PRK01060 endonuclease IV; Prov 25.5 7E+02 0.015 25.0 12.0 98 302-426 14-114 (281)
276 PRK11815 tRNA-dihydrouridine s 25.5 2.5E+02 0.0055 30.0 7.6 26 297-322 148-173 (333)
277 PRK07259 dihydroorotate dehydr 25.4 7.7E+02 0.017 25.5 11.6 25 299-323 168-192 (301)
278 PRK05283 deoxyribose-phosphate 25.4 1.6E+02 0.0035 31.2 6.1 98 220-322 66-169 (257)
279 PF01791 DeoC: DeoC/LacD famil 25.4 2.7E+02 0.0059 27.9 7.4 119 222-344 56-202 (236)
280 PRK00043 thiE thiamine-phospha 25.1 6.1E+02 0.013 24.2 9.5 67 405-484 115-189 (212)
281 TIGR00555 panK_eukar pantothen 25.1 1.3E+02 0.0027 32.1 5.3 126 331-471 121-278 (279)
282 PRK03202 6-phosphofructokinase 25.0 80 0.0017 34.0 3.9 74 303-381 21-102 (320)
283 cd01292 metallo-dependent_hydr 24.8 3.1E+02 0.0068 25.7 7.3 105 242-379 40-151 (275)
284 cd00764 Eukaryotic_PFK Phospho 24.8 70 0.0015 38.5 3.7 79 291-376 398-480 (762)
285 PRK05742 nicotinate-nucleotide 24.8 1.8E+02 0.0039 31.0 6.2 64 240-321 199-262 (277)
286 PRK13523 NADPH dehydrogenase N 24.5 81 0.0017 33.9 3.8 28 296-323 223-250 (337)
287 PRK06846 putative deaminase; V 24.4 5.2E+02 0.011 27.9 9.7 40 361-421 267-310 (410)
288 TIGR02109 PQQ_syn_pqqE coenzym 24.3 1.9E+02 0.0042 30.4 6.4 29 294-322 34-62 (358)
289 COG1099 Predicted metal-depend 24.2 1.4E+02 0.003 31.9 5.2 78 360-442 45-151 (254)
290 cd04735 OYE_like_4_FMN Old yel 23.9 6.1E+02 0.013 27.3 10.1 164 236-423 76-257 (353)
291 TIGR02708 L_lactate_ox L-lacta 23.9 4.8E+02 0.01 29.0 9.5 37 240-277 149-186 (367)
292 TIGR02483 PFK_mixed phosphofru 23.6 80 0.0017 34.0 3.5 72 304-380 20-102 (324)
293 PF01791 DeoC: DeoC/LacD famil 23.6 2E+02 0.0044 28.7 6.2 160 296-499 14-180 (236)
294 COG1387 HIS2 Histidinol phosph 23.6 81 0.0018 32.2 3.4 35 363-397 175-210 (237)
295 COG4197 Uncharacterized protei 23.5 97 0.0021 28.9 3.5 54 143-200 26-79 (96)
296 cd04727 pdxS PdxS is a subunit 23.5 81 0.0018 34.0 3.5 58 240-317 18-91 (283)
297 PLN02795 allantoinase 23.5 1.5E+02 0.0032 33.5 5.7 101 361-497 212-329 (505)
298 COG2120 Uncharacterized protei 23.4 2.6E+02 0.0055 28.6 6.9 83 375-466 44-131 (237)
299 cd00764 Eukaryotic_PFK Phospho 23.4 68 0.0015 38.6 3.2 117 291-421 12-148 (762)
300 PF03746 LamB_YcsF: LamB/YcsF 23.4 68 0.0015 33.7 2.9 78 220-311 1-91 (242)
301 cd03321 mandelate_racemase Man 23.2 1.6E+02 0.0035 31.3 5.7 121 298-418 141-292 (355)
302 TIGR00735 hisF imidazoleglycer 23.1 3.9E+02 0.0084 27.2 8.1 78 241-321 87-176 (254)
303 cd06543 GH18_PF-ChiA-like PF-C 23.0 2.4E+02 0.0052 30.0 6.8 90 373-467 68-165 (294)
304 PRK13209 L-xylulose 5-phosphat 23.0 6.2E+02 0.013 25.4 9.5 101 295-423 19-121 (283)
305 PF07503 zf-HYPF: HypF finger; 22.7 36 0.00078 26.1 0.5 21 545-575 11-31 (35)
306 cd01822 Lysophospholipase_L1_l 22.7 4.5E+02 0.0097 23.8 7.7 72 362-442 55-132 (177)
307 TIGR02478 6PF1K_euk 6-phosphof 22.6 72 0.0015 38.2 3.2 79 291-376 398-480 (745)
308 PRK09613 thiH thiamine biosynt 22.6 3.2E+02 0.0068 31.2 8.0 178 295-529 113-330 (469)
309 COG0167 PyrD Dihydroorotate de 22.6 2E+02 0.0044 31.2 6.3 189 225-471 97-308 (310)
310 cd00019 AP2Ec AP endonuclease 22.5 8E+02 0.017 24.7 13.0 66 361-427 45-111 (279)
311 cd00763 Bacterial_PFK Phosphof 22.5 90 0.0019 33.6 3.6 74 302-380 19-100 (317)
312 cd06563 GH20_chitobiase-like T 22.1 62 0.0013 34.7 2.4 26 296-321 14-39 (357)
313 TIGR02351 thiH thiazole biosyn 22.0 2.4E+02 0.0052 30.5 6.7 24 295-318 101-124 (366)
314 PF06368 Met_asp_mut_E: Methyl 21.9 1.2E+02 0.0026 34.6 4.6 178 349-543 136-346 (441)
315 PRK07213 chlorohydrolase; Prov 21.8 1E+03 0.022 25.5 12.0 97 295-420 174-282 (375)
316 PRK06852 aldolase; Validated 21.7 3.2E+02 0.0069 29.7 7.5 97 242-350 193-298 (304)
317 PF13240 zinc_ribbon_2: zinc-r 21.7 40 0.00088 23.5 0.6 10 564-573 12-21 (23)
318 PF13481 AAA_25: AAA domain; P 21.6 1.6E+02 0.0034 27.6 4.7 59 360-420 126-185 (193)
319 TIGR03612 RutA pyrimidine util 21.6 65 0.0014 34.4 2.4 43 298-340 307-350 (355)
320 KOG2499 Beta-N-acetylhexosamin 21.5 73 0.0016 36.9 2.8 36 296-332 194-229 (542)
321 KOG0573 Asparagine synthase [A 21.4 62 0.0014 37.2 2.3 55 220-289 322-380 (520)
322 PRK07259 dihydroorotate dehydr 21.3 4.2E+02 0.009 27.5 8.0 84 297-418 101-186 (301)
323 KOG0846 Mitochondrial/chloropl 21.3 32 0.00069 36.7 0.0 38 391-428 112-149 (274)
324 PRK11815 tRNA-dihydrouridine s 21.2 4.4E+02 0.0095 28.3 8.4 92 298-419 75-169 (333)
325 TIGR03609 S_layer_CsaB polysac 21.1 8.1E+02 0.017 25.0 9.9 122 295-447 10-131 (298)
326 PF02449 Glyco_hydro_42: Beta- 21.1 1.1E+02 0.0024 32.5 4.0 61 295-379 5-65 (374)
327 COG1312 UxuA D-mannonate dehyd 21.1 2.5E+02 0.0053 31.5 6.5 151 277-442 61-237 (362)
328 cd03329 MR_like_4 Mandelate ra 20.9 3.2E+02 0.0069 29.3 7.3 124 298-421 143-299 (368)
329 PLN02411 12-oxophytodienoate r 20.9 4.4E+02 0.0095 29.1 8.5 126 236-372 85-231 (391)
330 PRK07360 FO synthase subunit 2 20.8 5.8E+02 0.013 27.7 9.3 27 296-322 90-116 (371)
331 COG0042 tRNA-dihydrouridine sy 20.6 3.7E+02 0.0081 28.9 7.7 129 223-399 69-218 (323)
332 PLN02489 homocysteine S-methyl 20.6 2.2E+02 0.0048 30.7 6.1 103 228-332 221-328 (335)
333 cd01298 ATZ_TRZ_like TRZ/ATZ f 20.6 2.9E+02 0.0063 28.7 6.8 104 295-419 189-298 (411)
334 TIGR00343 pyridoxal 5'-phospha 20.6 81 0.0018 34.1 2.8 18 240-257 20-37 (287)
335 CHL00120 psaL photosystem I su 20.6 31 0.00066 33.9 -0.2 45 444-489 60-105 (143)
336 TIGR00674 dapA dihydrodipicoli 20.5 9.5E+02 0.021 24.8 12.0 90 295-427 14-107 (285)
337 cd02911 arch_FMN Archeal FMN-b 20.5 3.3E+02 0.0072 27.8 7.0 77 218-322 141-222 (233)
338 cd04735 OYE_like_4_FMN Old yel 20.4 1.1E+02 0.0025 32.7 3.9 28 296-323 231-258 (353)
339 cd02801 DUS_like_FMN Dihydrour 20.1 3.5E+02 0.0076 26.3 6.9 26 298-323 65-90 (231)
340 cd02931 ER_like_FMN Enoate red 20.1 1.1E+02 0.0024 33.3 3.7 28 296-323 248-275 (382)
341 PF00150 Cellulase: Cellulase 20.0 6E+02 0.013 24.8 8.5 130 301-451 22-173 (281)
No 1
>PLN02444 HMP-P synthase
Probab=100.00 E-value=4.2e-258 Score=2031.09 Aligned_cols=632 Identities=88% Similarity=1.417 Sum_probs=603.0
Q ss_pred hhHHHHhcCCCCCCCCCCCccccCCcccccccccc----cccccccc--ccccccCCCCCCCCCCCCccCCCCCCCCCCC
Q 006203 8 TTSIVCKNGIHSTPAKLPSTSFLPGFDVVACKKEI----CSSMSSGI--SAALTFDPPTANSKNTGQRKHTADPASPDFL 81 (657)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (657)
+.+.+++..++.+.++++++++++||..++..... ..++..++ ..+..+.++..+.....+++|++||++|+|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (642)
T PLN02444 2 LLSVVCNNANSSAPLKLPNSSLLPGFDVVVRAQALAVSAARLKKESTATRATLTFDPPTGNSEKAKQTKPTVDPSAPDFL 81 (642)
T ss_pred ccchHhhccCCcccccccccccccccccccccccccccccccccccccchhhhccCCcccccccccccCCCcCCCCCCCC
Confidence 45677889999999999999999999987744333 33444333 3333444445555688899999999999999
Q ss_pred CCCCccccCCCCceEeeccccCCCCCccccccEEEeecCCCCCcccccCCCCCCCCcCCCCCCCCchhhhhhhhcCCCcc
Q 006203 82 PLPSFEQCFPKSSKEYREITHEESGHILQVPFRRIHLSGDEPNFDTYDTSGPQNISPRVGLPKLRKDWIDRREKLGAPRY 161 (657)
Q Consensus 82 ~~~~~~~~~P~S~KiY~~~~~~~~~~~lrVP~ReI~Ls~~~~~~~vYDTSGPy~id~~~GLp~lR~~Wi~~R~d~~~~~m 161 (657)
|++++..+||+|+|+|+++.+.+++++||||||+|+|++++++|+||||||||.||+++|||++|..||.+|++..+.++
T Consensus 82 ~~~~~~~~~p~s~k~y~~~~~~~s~~~~~v~~r~i~l~~~~~~~~~ydtsgp~~~d~~~gl~~~r~~w~~~r~~~~~~~~ 161 (642)
T PLN02444 82 PIPSFEECFPKSTKEYKEVVHEESGHVLKVPFRRVHLSGDEPHFDNYDTSGPQNIDPRIGLPKLRKEWIDRREKLGTPRY 161 (642)
T ss_pred cCCCCCCCCCCCceEeeCCccCCCCCCCcccceEEEeCCCCCCcCcccCCCCcccchhcCChhhhHHHHhcccccCCCcc
Confidence 99999999999999999998777789999999999999999999999999999999999999999999999999888999
Q ss_pred cHHHHHHcCCCCHHHHHHHHHcCCCHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeeccccCCCCCChHHHHH
Q 006203 162 TQMYYAKQGVITEEMLYCATREKLDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVY 241 (657)
Q Consensus 162 TQm~~Ar~GiIT~EMe~VA~~E~i~pE~vR~~VA~Gr~VIPaN~nh~~~~p~~IG~~l~tKVNANIGtS~~~~~ie~Eve 241 (657)
|||++||+|+|||||++||++||++|||||++||+||+|||+|+||++++||+||+||+||||||||||++.+|+++|||
T Consensus 162 TQm~~Ar~GiIT~EMe~VA~~E~v~pE~vR~~VA~Gr~VIPaN~nh~~~~p~~IG~gl~tKVNANIGtS~~~s~ie~Eve 241 (642)
T PLN02444 162 TQMYYAKQGIITEEMLYCATREKLDPEFVRSEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVTSSIEEEVY 241 (642)
T ss_pred hHHHHHhcCCCCHHHHHHHHHcCCCHHHHHHHHhCceEEEecCCCCCCCCceEecCCceeEEeeeecCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEec
Q 006203 242 KVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHA 321 (657)
Q Consensus 242 Kl~~A~~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGVDf~TIHa 321 (657)
|++||++||||||||||||+||++||+|||+||||||||||||||+++++|.+++||||+||++|++||+||||||||||
T Consensus 242 K~~~A~~~GADTvMDLSTGgdi~~iR~~Il~~spvPVGTVPIYqA~~~~~~~~~~lt~d~~~d~ieeQaeqGVDfmTIH~ 321 (642)
T PLN02444 242 KLQWATMWGADTVMDLSTGRHIHETREWILRNSPVPVGTVPIYQALEKVDGIAENLTWEVFRETLIEQAEQGVDYFTIHA 321 (642)
T ss_pred HHHHHHHcCCCeEeeccCCCCHHHHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHHHHHHHHHHHHhCCCEEEECh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHH
Q 006203 322 GVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELL 401 (657)
Q Consensus 322 Gv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~ 401 (657)
||++++++++.+|+|||||||||||++||++|++|||||+|||||||||++||||||||||||||||+||||+|||+||+
T Consensus 322 Gv~~~~v~~~~~R~tgIVSRGGSi~a~Wml~~~kENPlYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~ 401 (642)
T PLN02444 322 GVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDDILDICNQYDIALSIGDGLRPGSIYDANDTAQFAELL 401 (642)
T ss_pred hhHHHHHHHHhCcccCceeCCcHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCeeeeccCCcCCCccccCCcHHHHHHHH
Confidence 99999999989999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhhcccceee
Q 006203 402 TQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLC 481 (657)
Q Consensus 402 ~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGYDHITsAIGaA~aa~~GadfLC 481 (657)
+|||||+|||++|||||||||||||||||++||++||++|++|||||||||||||||||||||||||||+|||+||||||
T Consensus 402 tLGELtkrA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvTDIAPGYDHItsAIGaAiaa~~GadfLC 481 (642)
T PLN02444 402 TQGELTRRAWEKDVQVMNEGPGHVPLHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLC 481 (642)
T ss_pred HHHHHHHHHHHcCCeEEEECCCcCcHHHHHHHHHHHHHhhCCCCceecCCcccccCCCchHHHHHHHHHHHHHcCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCchhhcCCCChhHHHHHHHHHHHHHhHhhhhcCCcchhhHHHHHHHHHhhcChHHHHhhcCChHHHHhhhhccCCCCC
Q 006203 482 YVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPSEG 561 (657)
Q Consensus 482 YVTPaEHLgLP~~eDVkeGViA~kIAAHaaDlaKg~p~A~~rD~~mSkAR~~~dWe~Qf~LalDPe~Ar~~~~e~~p~~~ 561 (657)
||||||||||||+||||||||||||||||||||||+|+|++||++||+||++|||++||+||||||+||+||++++|.+.
T Consensus 482 YVTPaEHLgLP~~eDVreGVIA~KIAAHAaDlaKg~p~A~~rD~~mS~AR~~~dWe~Qf~LaLDPe~Ar~~~~e~~p~~~ 561 (642)
T PLN02444 482 YVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPHAQAWDDALSKARFEFRWMDQFALSLDPVTAMSFHDETLPSEG 561 (642)
T ss_pred ecChHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHCCHHHHHHHcCCHHHHHHHHHhcCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCCCCcchhhhhHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccCCcccCCcCCeeeeccCcccc
Q 006203 562 AKVAHFCSMCGPKFCSMKITEDVRKYAEEHGYGSAEEALQQGMDAMSAEFLAAKKTVSGEQHGEVGGEIYLPESYISS 639 (657)
Q Consensus 562 ~k~~~~CSMCGp~fCamki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 639 (657)
+|+++|||||||+||||||++++++++++++.....++++.||++|+.+|..++||++|++|.+.|+++|++..+.+.
T Consensus 562 ~k~a~~CSMCGp~fCamki~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~g~~~y~~~~~~~~ 639 (642)
T PLN02444 562 AKVAHFCSMCGPKFCSMKITEDVRKYAEEHGYGSAEEAVKQGMDAMSAEFLAAKKTISGEQHGESGGEIYLPESYVAS 639 (642)
T ss_pred cCCCCccCCCCcchhhhHHHHHHHHHHhhccccchHHHHHhhHHHhhccccccccchhHHHHHhcCCcccccccchhc
Confidence 999999999999999999999999999988775556678899999999999999999999999999999999877654
No 2
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=100.00 E-value=2.5e-247 Score=1946.16 Aligned_cols=522 Identities=74% Similarity=1.165 Sum_probs=508.8
Q ss_pred cccCCCCceEeeccccCCCCCccccccEEEeecCC-------CCCcccccCCCCC-----CCCcCCCCCCCCchhhhhhh
Q 006203 87 EQCFPKSSKEYREITHEESGHILQVPFRRIHLSGD-------EPNFDTYDTSGPQ-----NISPRVGLPKLRKDWIDRRE 154 (657)
Q Consensus 87 ~~~~P~S~KiY~~~~~~~~~~~lrVP~ReI~Ls~~-------~~~~~vYDTSGPy-----~id~~~GLp~lR~~Wi~~R~ 154 (657)
+.+||+|+|+|++| ++++||||||+|+|+++ |+||+|||||||| .||+++|||++|++||.+|+
T Consensus 16 ~~~~p~s~k~y~~g----~~~~~~vp~r~i~l~~~~~~~~~~~~~~~~ydtsgpy~dp~~~id~~~gl~~~r~~wi~~r~ 91 (607)
T PRK09284 16 TGPFPGSRKIYVEG----SRPDIRVPMREIHLSDTPTGGGEPNPPVPVYDTSGPYTDPDAKIDLRKGLPKLREPWIEERG 91 (607)
T ss_pred CCCCCCCceecCCC----CCCCccccceEEEeCCCCCCCCCCCCCcceecCCCCCCCCCccchhhcCCchhhhhhcccCC
Confidence 67999999999984 46899999999999974 6899999999999 59999999999999999998
Q ss_pred hc-----------------------------------CCCcccHHHHHHcCCCCHHHHHHHHHcC---------------
Q 006203 155 KL-----------------------------------GAPRYTQMYYAKQGVITEEMLYCATREK--------------- 184 (657)
Q Consensus 155 d~-----------------------------------~~~~mTQm~~Ar~GiIT~EMe~VA~~E~--------------- 184 (657)
|+ .+.++|||++||+|+|||||++||++||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ra~~~~~~TQm~~Ar~GiIT~EMe~VA~~E~~~~~~~~~~~~~g~~ 171 (607)
T PRK09284 92 DTEELEGRSVKSSDYRLADAGLDHLRFGLLRRPRRAKAGKNVTQMHYARQGIITPEMEYVAIRENMGREEVLRRQHPGES 171 (607)
T ss_pred CceeecCccCChhhccccccccccccccCCCCCcccCCCCCcchHHHHhcCCCCHHHHHHHHHhCcccccchhhcccccc
Confidence 73 1457999999999999999999999999
Q ss_pred --------CCHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeeccccCCCCCChHHHHHHHHHHHHhCCCEeee
Q 006203 185 --------LDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMD 256 (657)
Q Consensus 185 --------i~pE~vR~~VA~Gr~VIPaN~nh~~~~p~~IG~~l~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADtvMD 256 (657)
++|||||++||+||+|||+|+|||+++||+||+||+||||||||||++++|+++||||++||++||||||||
T Consensus 172 ~ga~~~~~i~pE~vR~~VA~Gr~VIP~N~nh~~~~p~~IG~~~~tKVNANIGtS~~~s~ieeEveK~~~A~~~GADtvMD 251 (607)
T PRK09284 172 FGAAIPEEITPEFVRDEVAAGRAIIPANINHPESEPMIIGRNFLVKINANIGNSAVTSSIEEEVEKMVWATRWGADTVMD 251 (607)
T ss_pred ccccCCCccCHHHHHHHHhCceEEeecCCCCCCCCeeEECCCceeEEEeeecCCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCccc
Q 006203 257 LSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMT 336 (657)
Q Consensus 257 LSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~Rvt 336 (657)
||||+|||+||+|||+||||||||||||||+++++|++++||||+|||+|++|||||||||||||||++++++++.+|+|
T Consensus 252 LSTGgdi~~~R~~Il~~spvPvGTVPiYqA~~~~~~~~~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~R~t 331 (607)
T PRK09284 252 LSTGKNIHETREWILRNSPVPIGTVPIYQALEKVNGVAEDLTWEIFRDTLIEQAEQGVDYFTIHAGVLLRYVPLTAKRVT 331 (607)
T ss_pred cCCCCCHHHHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHHHHHHHHHHHHhCCCEEEEChhhHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCe
Q 006203 337 GIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQ 416 (657)
Q Consensus 337 gIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQ 416 (657)
||||||||||++||++|++|||||+|||+|||||++||||||||||||||||+||||+|||+||++|||||+|||++|||
T Consensus 332 gIVSRGGSima~Wml~h~kENplYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~tLGELt~rA~e~gVQ 411 (607)
T PRK09284 332 GIVSRGGSIMAKWCLAHHKENFLYTHFEEICEIMAAYDVSFSLGDGLRPGSIADANDEAQFAELETLGELTKIAWEHDVQ 411 (607)
T ss_pred CcccCCHHHHHHHHHHcCCcCcHHHHHHHHHHHHHHhCeeeeccCCcCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhhcccceeeecCchhhcCCCChhH
Q 006203 417 VMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDD 496 (657)
Q Consensus 417 VMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGYDHITsAIGaA~aa~~GadfLCYVTPaEHLgLP~~eD 496 (657)
||||||||||||+|++||++||++|++|||||||||||||||||||||||||||+|||+||||||||||||||||||+||
T Consensus 412 VMIEGPGHVPl~~I~~N~~lqk~lc~~APfYvLGPLvTDIApGYDHItsAIGaA~aa~~Gad~LCYVTPaEHLgLP~~eD 491 (607)
T PRK09284 412 VMIEGPGHVPMHLIKENMDKQLEHCHEAPFYTLGPLTTDIAPGYDHITSAIGAAMIGWFGTAMLCYVTPKEHLGLPNKDD 491 (607)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhhCCCCeeecCCcccccCCCchHHHHHHHHHHHHHcCCCeEEecChHHHcCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhhhhcCCcchhhHHHHHHHHHhhcChHHHHhhcCChHHHHhhhhccCCCCCCCCCCcccCCCCCcc
Q 006203 497 VKAGVIAYKIAAHAADLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPSEGAKVAHFCSMCGPKFC 576 (657)
Q Consensus 497 VkeGViA~kIAAHaaDlaKg~p~A~~rD~~mSkAR~~~dWe~Qf~LalDPe~Ar~~~~e~~p~~~~k~~~~CSMCGp~fC 576 (657)
||+|||||||||||||||||+|+|++||++||+||++|||++||+||||||+||+||++++|++.+|+++|||||||+||
T Consensus 492 VreGVIA~KIAAHaaDlaKg~p~A~~rD~~mS~AR~~~dWe~Qf~LaLDPe~Ar~~~de~~p~~~~k~a~~CSMCGp~fC 571 (607)
T PRK09284 492 VKEGVITYKIAAHAADLAKGHPGAQIRDNALSKARFEFRWEDQFNLSLDPDTARAFHDETLPAESAKVAHFCSMCGPKFC 571 (607)
T ss_pred HHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHCCHHHHHHHhcCHHHHHHHHhhcCCccccCCCCccCCCChhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccCCcccCCcCCeeeecc
Q 006203 577 SMKITEDVRKYAEEHGYGSAEEALQQGMDAMSAEFLAAKKTVSGEQHGEVGGEIYLPE 634 (657)
Q Consensus 577 amki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~g~~~y~~~ 634 (657)
||||++++++++++ +.||++||+||++ .|++||++.
T Consensus 572 amki~~~~~~~~~~----------~~gm~~~~~~f~~------------~g~~~y~~~ 607 (607)
T PRK09284 572 SMKISQEVRDYAAE----------EAGMAEKSEEFRA------------SGGELYLPV 607 (607)
T ss_pred hhHHHHHHHHHhhh----------hccHHHHHHHHHh------------hCcccccCC
Confidence 99999999998764 3599999999998 799999863
No 3
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=100.00 E-value=1.6e-213 Score=1633.97 Aligned_cols=426 Identities=68% Similarity=1.066 Sum_probs=411.8
Q ss_pred cccHHHHHHcCCCCHHHHHHHHHcCCCHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeeccccCCCCCChHHH
Q 006203 160 RYTQMYYAKQGVITEEMLYCATREKLDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEE 239 (657)
Q Consensus 160 ~mTQm~~Ar~GiIT~EMe~VA~~E~i~pE~vR~~VA~Gr~VIPaN~nh~~~~p~~IG~~l~tKVNANIGtS~~~~~ie~E 239 (657)
+||||++||+|+||+||++||++||+ |||||++||+||+|||+|+|||+++||+||+||+||||||||||++++|+++|
T Consensus 2 ~~Tqm~~Ar~GiiT~EM~~VA~~E~~-~e~vr~~vA~Gr~iIp~N~~h~~~~p~~IG~~~~tKVNaNiGtS~~~~~i~~E 80 (432)
T COG0422 2 NMTQMEYARKGIITPEMEFVAEREGP-PEFVRREVAEGRAIIPANINHPELEPMIIGRGLRTKVNANIGTSADTSDIDEE 80 (432)
T ss_pred cccHHHHHhcCCCCHHHHHHHHhcCC-HHHHHHHHhCCcEEeecCCCCCcccceeeccCceEEEeeeecCCcccCCHHHH
Confidence 68999999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 006203 240 VYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTI 319 (657)
Q Consensus 240 veKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGVDf~TI 319 (657)
|||++||++|||||||||||||||++||+|||+||||||||||||||++++++.+++||||+||++||+|||||||||||
T Consensus 81 veK~~~A~~~GADtvMDLStGgdl~eiR~~ii~~s~vPvGTVPIYqA~~~~~~~~~~~t~d~~~~~v~~qa~~GVdfmTI 160 (432)
T COG0422 81 VEKAVWAIKWGADTVMDLSTGGDLHEIREWIIRNSPVPVGTVPIYQALEEVNGKVEDLTEDDFFDTVEKQAEQGVDFMTI 160 (432)
T ss_pred HHHHHHHHHhCcceeEecccCCCHHHHHHHHHhcCCCCcCCchHHHHHHHHhcchhhCCHHHHHHHHHHHHHhCCcEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccccccc--CcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHH
Q 006203 320 HAGVLLRYIPLTA--KRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQF 397 (657)
Q Consensus 320 HaGv~~~~v~~~~--~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~ 397 (657)
||||++++++++. +|+|||||||||||++||++|++|||||+|||+||||||+||||||||||||||||+||||+|||
T Consensus 161 HaGV~~~~~~~~~~~~R~~giVSRGGsi~a~Wml~~~~ENply~~fd~lleI~k~yDvtlSLGDglRPG~i~DA~D~aQ~ 240 (432)
T COG0422 161 HAGVLLEYVPRTKRSGRVTGIVSRGGSIMAAWMLHNHKENPLYEHFDELLEIFKEYDVTLSLGDGLRPGCIADANDEAQF 240 (432)
T ss_pred ehhhhHHHHHHHHhcCceeeeeccchHHHHHHHHHcCCcCchhhhHHHHHHHHHHhCeeeeccCCCCCCcccCCccHHHH
Confidence 9999999999855 59999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhhccc
Q 006203 398 AELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGT 477 (657)
Q Consensus 398 ~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGYDHITsAIGaA~aa~~Ga 477 (657)
+||++|||||+|||++|||||||||||||||+|++||++||++|++|||||||||||||||||||||||||||+|||+||
T Consensus 241 ~EL~tlgeL~krA~~~gVQvmvEGPGHvpl~~I~~nv~l~k~~c~~aPfYvLGPLvTDIApGYDHItsAIGaA~aa~~Ga 320 (432)
T COG0422 241 AELITLGELTKRAWEAGVQVMVEGPGHVPLNEIEANVKLQKELCDGAPFYVLGPLVTDIAPGYDHITSAIGAAMAAWAGA 320 (432)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECCCcCcHHHHHHHHHHHHHhcCCCCeeeeCCcccccCCCchHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCchhhcCCCChhHHHHHHHHHHHHHhHhhhhcCCcchhhHHHHHHHHHhhcChHHHHhhcCChHHHHhhhhccC
Q 006203 478 ALLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETL 557 (657)
Q Consensus 478 dfLCYVTPaEHLgLP~~eDVkeGViA~kIAAHaaDlaKg~p~A~~rD~~mSkAR~~~dWe~Qf~LalDPe~Ar~~~~e~~ 557 (657)
||||||||+|||+|||+||||+|||||||||||||+|||+|+|++||++||+||++|||++||+||||||+||+||++++
T Consensus 321 d~LCYVTPaEHL~LP~~eDV~eGvIa~kIAAHaaD~aK~~~~a~~~D~~ms~aR~~~dWe~qf~lalDpe~Ar~~~~e~~ 400 (432)
T COG0422 321 DMLCYVTPAEHLGLPNVEDVKEGVIAYKIAAHAADLAKGHPGARDRDDAMSKARFEFDWEDQFELALDPERARAYHDETL 400 (432)
T ss_pred ceEEecCcHHHcCCCCHHHHHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHHhCCHHHHHHHhcChHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccCCCCCcchhhhhHHHHH
Q 006203 558 PSEGAKVAHFCSMCGPKFCSMKITEDVRK 586 (657)
Q Consensus 558 p~~~~k~~~~CSMCGp~fCamki~~~~~~ 586 (657)
|++..+.+++|+|||++||+|++.++.++
T Consensus 401 p~~~~~csmcg~~C~~k~~~~~~~~~~~~ 429 (432)
T COG0422 401 PEESDKCAMCGSMCAPKFCSMKISQDVRD 429 (432)
T ss_pred CCCcchhhhhhcccCHHHHHHHHhHhhhh
Confidence 99876555555555555555555555443
No 4
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=100.00 E-value=5.4e-207 Score=1596.45 Aligned_cols=420 Identities=60% Similarity=0.940 Sum_probs=414.3
Q ss_pred ccHHHHHHcCCCCHHHHHHHHHcCCCHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeeccccCCCCCChHHHH
Q 006203 161 YTQMYYAKQGVITEEMLYCATREKLDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEV 240 (657)
Q Consensus 161 mTQm~~Ar~GiIT~EMe~VA~~E~i~pE~vR~~VA~Gr~VIPaN~nh~~~~p~~IG~~l~tKVNANIGtS~~~~~ie~Ev 240 (657)
||||++||+|+||+||++||++||++||+||++||+|++|||+|+||++++||+||++|+||||||||||++.+|+++|+
T Consensus 1 ~Tq~~~Ar~G~iT~em~~vA~~E~v~~e~ir~~vA~G~iVIp~N~~~~~~~p~~IG~glrtKVNaNIGtS~~~~d~~~E~ 80 (423)
T TIGR00190 1 MTQMHYARKGVITPEMKFVAERENVDPEFLRREVASGRIVIPSNINREESEPMGIGRNLRTKVNANIGTSADTSDIEEEV 80 (423)
T ss_pred CChHHHHHcCCCCHHHHHHHHHcCCCHHHHHHHhhCceEEeecCCCCCCCCceEecCCceeEEEeeecCCCCCCCHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEe
Q 006203 241 YKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIH 320 (657)
Q Consensus 241 eKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGVDf~TIH 320 (657)
+|+++|++|||||||||||||||+++|++||++|||||||||||||+.++.+++.+||+|+||++||+||+|||||||||
T Consensus 81 ~K~~~A~~~GADtiMDLStGgdl~~iR~~il~~s~vpvGTVPiYqa~~~~~~~~~~mt~d~~~~~ie~qa~dGVDfmTiH 160 (423)
T TIGR00190 81 EKALIAIKYGADTVMDLSTGGDLDEIRKAILDAVPVPVGTVPIYQAAEKVHGAVEDMDEDDMFRAIEKQAKDGVDFMTIH 160 (423)
T ss_pred HHHHHHHHcCCCeEeeccCCCCHHHHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHHHHHHHHHHHHhCCCEEEEc
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred ccccccccccc--cCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHH
Q 006203 321 AGVLLRYIPLT--AKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFA 398 (657)
Q Consensus 321 aGv~~~~v~~~--~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~ 398 (657)
||||++++++. .+|+|||||||||||++||++|++|||||+|||||||||++||||||||||||||||+||+|+||++
T Consensus 161 ~Gi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~~~~ENPlye~fD~lLeI~~~yDVtlSLGDglRPG~i~DA~D~aQi~ 240 (423)
T TIGR00190 161 AGVLLEYVERLKRSGRITGIVSRGGAILAAWMLHHHKENPLYKNFDYILEIAKEYDVTLSLGDGLRPGCIADATDRAQIS 240 (423)
T ss_pred cchhHHHHHHHHhCCCccCeecCcHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCeeeeccCCcCCCccccCCcHHHHH
Confidence 99999999975 5799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhhcccc
Q 006203 399 ELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTA 478 (657)
Q Consensus 399 EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGYDHITsAIGaA~aa~~Gad 478 (657)
||++||||++||||+|||||||||||||||||++||++||++|++|||||||||||||||||||||||||||+|||+|||
T Consensus 241 El~~lgeL~~rA~e~gVQvMVEGPGHvPl~~I~~nv~lqK~lc~~APfYvLGPLvTDiApGYDHItsAIGgAiAa~~GAd 320 (423)
T TIGR00190 241 ELITLGELVERAREADVQCMVEGPGHVPLDQIEANVRLQKELCDEAPFYVLGPLVTDIAPGYDHITSAIGAAIAGWAGAD 320 (423)
T ss_pred HHHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHHHhhCCCCeeecCCcccccCCCchHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCchhhcCCCChhHHHHHHHHHHHHHhHhhhhcCCcchhhHHHHHHHHHhhcChHHHHhhcCChHHHHhhhhccCC
Q 006203 479 LLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLP 558 (657)
Q Consensus 479 fLCYVTPaEHLgLP~~eDVkeGViA~kIAAHaaDlaKg~p~A~~rD~~mSkAR~~~dWe~Qf~LalDPe~Ar~~~~e~~p 558 (657)
|||||||+|||+|||+|||||||||+||||||||||||+|+|++||++||+||++|||++||+||||||+||++|+++.|
T Consensus 321 fLCYVTPaEHL~LP~~eDVreGviA~kIAAHaaDiakg~~~A~e~D~~Ms~AR~~ldWe~q~~lalDPe~ar~~r~~~~~ 400 (423)
T TIGR00190 321 FLCYVTPKEHLALPNVEDVKEGVIAYKIAAHAADLAKGHPGARERDLEMSKARKNFDWERQFELALDPEKAREYRDETPP 400 (423)
T ss_pred eEEecCcHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHCCHHHHHHHcCCHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCcccCCCCCcchhhhhHHHH
Q 006203 559 SEGAKVAHFCSMCGPKFCSMKITEDVR 585 (657)
Q Consensus 559 ~~~~k~~~~CSMCGp~fCamki~~~~~ 585 (657)
.+. ++||||| +|||||++++++
T Consensus 401 ~~~----~~CsMCG-~~Ca~k~~~~~~ 422 (423)
T TIGR00190 401 EDE----DFCSMCG-KYCAMKIVQEAR 422 (423)
T ss_pred CCC----CccCcch-HHHHHHHHHHhc
Confidence 763 7999999 999999999865
No 5
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=100.00 E-value=1.6e-205 Score=1589.73 Aligned_cols=421 Identities=54% Similarity=0.859 Sum_probs=413.1
Q ss_pred ccHHHHHHcCCCCHHHHHHHHHcCCCHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeeccccCCCCCChHHHH
Q 006203 161 YTQMYYAKQGVITEEMLYCATREKLDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEV 240 (657)
Q Consensus 161 mTQm~~Ar~GiIT~EMe~VA~~E~i~pE~vR~~VA~Gr~VIPaN~nh~~~~p~~IG~~l~tKVNANIGtS~~~~~ie~Ev 240 (657)
||||+.||+|+||+||++||++||++||+||++||+||+|||+|+||++++|++||++|+||||||||||++++|+++|+
T Consensus 1 ~Tq~~~Ar~G~iT~em~~vA~~E~v~~e~ir~~vA~G~iVIp~N~~h~~~~p~~IG~gl~tKVNaNIGtS~~~~d~~~E~ 80 (431)
T PRK13352 1 MTQMEAARKGIITEEMEYVAKKEGVDPEFIREGVAEGRIVIPANINHKNLKPVGIGKGLRTKVNANIGTSSDISDIEEEL 80 (431)
T ss_pred CChHHHHHcCCCCHHHHHHHHHcCCCHHHHHHHHhCceEEEecCCCCCCCCeeEEcCCceeEEeeeecCCCCCCCHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHh---cCccCCCCHHHHHHHHHHHHhcCCCEE
Q 006203 241 YKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKV---DGIAENLSWEVFRDTLIEQAEQGVDYF 317 (657)
Q Consensus 241 eKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~---~g~~~~lt~e~~~d~ieeQAeqGVDf~ 317 (657)
+|+++|++|||||||||||||||++||++||++|||||||||||||+.++ +|++.+||+|+||++||+||+||||||
T Consensus 81 ~K~~~A~~~GADtiMDLStggdl~~iR~~il~~s~vpvGTVPiYqa~~~~~~k~~~~~~mt~d~~~~~ie~qa~~GVDfm 160 (431)
T PRK13352 81 EKAKVAVKYGADTIMDLSTGGDLDEIRRAIIEASPVPVGTVPIYQAAVEAARKYGSVVDMTEDDLFDVIEKQAKDGVDFM 160 (431)
T ss_pred HHHHHHHHcCCCeEeeccCCCCHHHHHHHHHHcCCCCCcChhHHHHHHHHHhcCCChhhCCHHHHHHHHHHHHHhCCCEE
Confidence 99999999999999999999999999999999999999999999999887 689999999999999999999999999
Q ss_pred EEeccccccccccc--cCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHH
Q 006203 318 TIHAGVLLRYIPLT--AKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTA 395 (657)
Q Consensus 318 TIHaGv~~~~v~~~--~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~A 395 (657)
|||||||++++++. .+|+|||||||||||++||++|++|||||+|||||||||++|||||||||||||||++||+|+|
T Consensus 161 TiHcGi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~n~~ENPlye~fD~lLeI~~~yDVtlSLGDglRPG~i~Da~D~a 240 (431)
T PRK13352 161 TIHCGVTRETLERLKKSGRIMGIVSRGGSFLAAWMLHNNKENPLYEHFDYLLEILKEYDVTLSLGDGLRPGCIADATDRA 240 (431)
T ss_pred EEccchhHHHHHHHHhcCCccCeecCCHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCeeeeccCCcCCCccccCCcHH
Confidence 99999999999974 4899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhhc
Q 006203 396 QFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGAL 475 (657)
Q Consensus 396 Q~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGYDHITsAIGaA~aa~~ 475 (657)
|++||++||||++|||++|||||||||||||||||++||++||++|++|||||||||||||||||||||||||||+|||+
T Consensus 241 Qi~El~~lgeL~~RA~e~gVQvMVEGPGHvPl~~I~~nv~l~K~lc~~APfYvLGPLvTDiApGYDHIt~AIGgAiAa~~ 320 (431)
T PRK13352 241 QIQELITLGELVKRAREAGVQVMVEGPGHVPLDQIEANVKLQKRLCHGAPFYVLGPLVTDIAPGYDHITSAIGGAIAAAA 320 (431)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHHhhCCCCceecCccccccCCCchHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeecCchhhcCCCChhHHHHHHHHHHHHHhHhhhhcCCcchhhHHHHHHHHHhhcChHHHHhhcCChHHHHhhhhc
Q 006203 476 GTALLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDE 555 (657)
Q Consensus 476 GadfLCYVTPaEHLgLP~~eDVkeGViA~kIAAHaaDlaKg~p~A~~rD~~mSkAR~~~dWe~Qf~LalDPe~Ar~~~~e 555 (657)
||||||||||+|||+|||+|||||||||+||||||||||||+|+|++||++||+||++|||++||+||||||+||++|++
T Consensus 321 GAdfLCYVTPaEHL~LP~~eDVreGviA~kIAAHaaDiakg~~~a~~~D~~ms~AR~~ldW~~q~~laiDpe~ar~~~~~ 400 (431)
T PRK13352 321 GADFLCYVTPAEHLGLPNVEDVREGVIASKIAAHAADIAKGRPGARERDDEMSKARKNLDWEKQFELALDPEKAREYRDE 400 (431)
T ss_pred CCCeEEecChHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHCCHHHHHHHcCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCcccCCCCCcchhhhhHHHHHH
Q 006203 556 TLPSEGAKVAHFCSMCGPKFCSMKITEDVRKY 587 (657)
Q Consensus 556 ~~p~~~~k~~~~CSMCGp~fCamki~~~~~~~ 587 (657)
+. ++.++||||| +|||||+++++++.
T Consensus 401 ~~-----~~~~~CsMCG-~~CA~ki~~~~~~~ 426 (431)
T PRK13352 401 RL-----KDEEACSMCG-KFCAMKIVNEALEG 426 (431)
T ss_pred cC-----CCCCeeCcCH-HHHHHHHHHHHhcc
Confidence 86 2357999999 89999999988654
No 6
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=100.00 E-value=6.8e-205 Score=1581.38 Aligned_cols=418 Identities=55% Similarity=0.878 Sum_probs=318.0
Q ss_pred cHHHHHHcCCCCHHHHHHHHHcCCCHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeeccccCCCCCChHHHHH
Q 006203 162 TQMYYAKQGVITEEMLYCATREKLDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVY 241 (657)
Q Consensus 162 TQm~~Ar~GiIT~EMe~VA~~E~i~pE~vR~~VA~Gr~VIPaN~nh~~~~p~~IG~~l~tKVNANIGtS~~~~~ie~Eve 241 (657)
|||++||+|+||+||++||++||++||+||++||+|++|||+|+||++.+||+||++|+||||||||||++.+|+++|++
T Consensus 1 Tq~~~Ar~G~iT~em~~vA~~E~i~pE~ir~~vA~G~iVIp~N~~h~~~~p~~IG~gl~tKVNaNIGtS~~~~d~~~E~~ 80 (420)
T PF01964_consen 1 TQMEYARKGIITPEMEYVAEREGISPEFIRRGVAAGRIVIPANINHKELKPVGIGKGLRTKVNANIGTSSDYSDIEEELE 80 (420)
T ss_dssp SHHHHHHTT---HHHHHHHHHHCTTHHHHHHHHHTTSEE----TT-TT-----EETTS--EEEEEE--------HHHHHH
T ss_pred ChHHHHhcCCCCHHHHHHHHHcCCCHHHHHHHHhCceEEEecCCCCCCCCceEecCCCceEEEeeecCCCCCCCHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEec
Q 006203 242 KVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHA 321 (657)
Q Consensus 242 Kl~~A~~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGVDf~TIHa 321 (657)
|+++|++|||||||||||||||+++|++||++|||||||||||||+.+.+|++.+||||+||++||+||+||||||||||
T Consensus 81 K~~~A~~~GADtvMDLStggdl~~iR~~il~~~~vpvGTVPiYqa~~~~~~~~~~~t~d~~~~~ie~qa~~GVDfmtiH~ 160 (420)
T PF01964_consen 81 KLKIAEKAGADTVMDLSTGGDLDEIRRAILENSPVPVGTVPIYQAAIRKGGSIVDMTEDDFFDVIEKQAKDGVDFMTIHC 160 (420)
T ss_dssp HHHHHHHTT-SEEEE---STTHHHHHHHHHHT-SS-EEE-HHHHHHHHTTT-GGG--HHHHHHHHHHHHHHT--EEEE-T
T ss_pred HHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHhCCCccccchHHHHHHHhCCChhhCCHHHHHHHHHHHHHcCCCEEEEcc
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred ccccccccccc--CcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHH
Q 006203 322 GVLLRYIPLTA--KRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAE 399 (657)
Q Consensus 322 Gv~~~~v~~~~--~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~E 399 (657)
|+|++++++.. +|+|||||||||||++||++|++|||||+||||||||||+|||||||||||||||++||+|+||++|
T Consensus 161 git~~~~~~~~~~~R~~giVSRGGs~l~~WM~~n~~ENPly~~fD~lLeI~k~yDVtLSLGDglRPG~i~Da~D~aQi~E 240 (420)
T PF01964_consen 161 GITRETLERLKKSGRIMGIVSRGGSILAAWMLHNGKENPLYEHFDRLLEIAKEYDVTLSLGDGLRPGCIADATDRAQIQE 240 (420)
T ss_dssp T--GGGGGGGT--TSSS----HHHHHHHHHHHHHTS--HHHHTHHHHHHHHTTTT-EEEE--TT--SSGGGTT-HHHHHH
T ss_pred chhHHHHHHHhhhccccCccccchHHHHHHHHhcCCcCcHHHhHHHHHHHHHHhCeeEecccccCCCCcCCCCcHHHHHH
Confidence 99999999855 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhhcccce
Q 006203 400 LLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTAL 479 (657)
Q Consensus 400 L~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGYDHITsAIGaA~aa~~Gadf 479 (657)
|++||||++||||+|||||||||||||||||++||++||++|++|||||||||||||||||||||||||||+|||+||||
T Consensus 241 L~~lgeL~~rA~e~gVQvMVEGPGHVPl~~I~~nv~lqK~lc~~APfYvLGPLvTDiapGYDHIt~AIGgAiaa~~GAdf 320 (420)
T PF01964_consen 241 LIILGELVKRAREAGVQVMVEGPGHVPLNQIEANVKLQKRLCHGAPFYVLGPLVTDIAPGYDHITSAIGGAIAAAAGADF 320 (420)
T ss_dssp HHHHHHHHHHHHHTT--EEEEE-SB--GGGHHHHHHHHHHHTTT--EEEE--BS-SS-TT-HHHHHHHHHHHHHHHT-SE
T ss_pred HHHHHHHHHHHHHCCCeEEeeCCCCCCHHHHHHHHHHHHHhcCCCCcccCCccccccCCChhHHHHHHHHHHHHHcCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCchhhcCCCChhHHHHHHHHHHHHHhHhhhhcCCcchhhHHHHHHHHHhhcChHHHHhhcCChHHHHhhhhccCCC
Q 006203 480 LCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPS 559 (657)
Q Consensus 480 LCYVTPaEHLgLP~~eDVkeGViA~kIAAHaaDlaKg~p~A~~rD~~mSkAR~~~dWe~Qf~LalDPe~Ar~~~~e~~p~ 559 (657)
||||||+|||+|||+|||||||||+||||||||||||+|+|++||++||+||++|||++||+||||||+|+++|+++.|.
T Consensus 321 LCYVTPaEHL~LP~~eDV~eGviA~kIAAHaaDiaKg~~~A~~~D~~ms~AR~~ldWe~q~~laiDpe~a~~~~~~~~~~ 400 (420)
T PF01964_consen 321 LCYVTPAEHLGLPTPEDVREGVIASKIAAHAADIAKGIPGARERDRAMSKARKELDWEKQFELAIDPEKARRIREERPPE 400 (420)
T ss_dssp EE---TTTTTS---HHHHHHHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHHTT-HHHHHHTSSSHHHHHHH-------
T ss_pred EeeccHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhCCHHHHHHHcCCHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCcccCCCCCcchhhhhHHH
Q 006203 560 EGAKVAHFCSMCGPKFCSMKITEDV 584 (657)
Q Consensus 560 ~~~k~~~~CSMCGp~fCamki~~~~ 584 (657)
+ .++||||| +|||||+++++
T Consensus 401 ~----~~~CsMCG-~~Ca~ki~~~~ 420 (420)
T PF01964_consen 401 D----EDFCSMCG-KFCAMKIVREY 420 (420)
T ss_dssp -------------------------
T ss_pred C----CCeeCCCh-hhHHHHHhhhC
Confidence 5 48999999 99999999864
No 7
>PF13667 ThiC-associated: ThiC-associated domain ; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=99.89 E-value=2.1e-24 Score=185.07 Aligned_cols=65 Identities=48% Similarity=0.776 Sum_probs=41.4
Q ss_pred ccCCCCceEeeccccCCCCCccccccEEEeecCC--------CCCcccccCCCCC-----CCCcCCCCCCCCchhhhhhh
Q 006203 88 QCFPKSSKEYREITHEESGHILQVPFRRIHLSGD--------EPNFDTYDTSGPQ-----NISPRVGLPKLRKDWIDRRE 154 (657)
Q Consensus 88 ~~~P~S~KiY~~~~~~~~~~~lrVP~ReI~Ls~~--------~~~~~vYDTSGPy-----~id~~~GLp~lR~~Wi~~R~ 154 (657)
++||+|+|+|++| +.++||||||+|+|+++ |++|+|||||||| .||+++|||++|++||.+|+
T Consensus 1 ~~~P~S~KiY~~g----~~~~irVPmR~I~Ls~t~~~~~~~~n~p~~vYDTSGPYtDp~~~iDi~~GLp~lR~~WI~~R~ 76 (80)
T PF13667_consen 1 QPFPASEKIYVQG----SRPDIRVPMREIHLSDTPIGNGGSPNPPVPVYDTSGPYTDPDVEIDIRKGLPPLREEWIEERG 76 (80)
T ss_dssp -S-TT-EEEEEE-----SSTT-EEEEEEE---GG------G----EEEE---GGGG-TTS---TTT-S--TTHHHHHHTS
T ss_pred CCCCCCeeEEeCC----CCCCceeecEEEEeCCCccccccCCCCCcCcccCCCCCCCCCcccchhcCChHHHHHHHHhcC
Confidence 4799999999984 47899999999999986 7899999999999 59999999999999999999
Q ss_pred hc
Q 006203 155 KL 156 (657)
Q Consensus 155 d~ 156 (657)
|+
T Consensus 77 D~ 78 (80)
T PF13667_consen 77 DT 78 (80)
T ss_dssp -E
T ss_pred Cc
Confidence 85
No 8
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=94.01 E-value=0.66 Score=49.01 Aligned_cols=75 Identities=24% Similarity=0.386 Sum_probs=47.7
Q ss_pred EeeccccCCCCCChHHHHHHHHHHHHhCCCEe-eecCCCCC--hHHHHHHHHhcCC-Ccc--ccchhhhHHHHhcCccCC
Q 006203 223 VNANIGNSAVASSIEEEVYKVQWATMWGADTV-MDLSTGRH--IHETREWILRNSA-VPV--GTVPIYQALEKVDGIAEN 296 (657)
Q Consensus 223 VNANIGtS~~~~~ie~EveKl~~A~~~GADtv-MDLSTGgd--i~~~R~~Il~nsp-vPV--GTVPIYqA~~k~~g~~~~ 296 (657)
||+++|.. ++..+.++..+++|+|.| +|.+.|.. ..++=++|-+..| +|| |+|.-.+.+.++
T Consensus 85 v~~~~~~~------~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l------ 152 (325)
T cd00381 85 VGAAVGTR------EDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDL------ 152 (325)
T ss_pred EEEecCCC------hhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHH------
Confidence 57777764 445778888999999986 57776644 1223333434443 554 566555544433
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEecc
Q 006203 297 LSWEVFRDTLIEQAEQGVDYFTIHAG 322 (657)
Q Consensus 297 lt~e~~~d~ieeQAeqGVDf~TIHaG 322 (657)
.+.|+||+.+|.|
T Consensus 153 -------------~~aGaD~I~vg~g 165 (325)
T cd00381 153 -------------IDAGADGVKVGIG 165 (325)
T ss_pred -------------HhcCCCEEEECCC
Confidence 5689999999743
No 9
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=92.77 E-value=4 Score=37.63 Aligned_cols=167 Identities=13% Similarity=0.055 Sum_probs=98.9
Q ss_pred ChHHHHHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccc-cchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcC
Q 006203 235 SIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVG-TVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQG 313 (657)
Q Consensus 235 ~ie~EveKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~nspvPVG-TVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqG 313 (657)
|.+.=.+=++++++.|+|.|.=+ |.-+..+++.+- | .+|++= .++..-...+.++..+.+++-.+.|
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~--g~~i~~~~~~~~-------~~~~~v~~---~v~~~~~~~~~~~~~~~a~~a~~~G 78 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVN--PGYVRLAADALA-------GSDVPVIV---VVGFPTGLTTTEVKVAEVEEAIDLG 78 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEC--HHHHHHHHHHhC-------CCCCeEEE---EecCCCCCCcHHHHHHHHHHHHHcC
Confidence 55555556788899999997643 444444444421 2 344331 1222222244788888888889999
Q ss_pred CCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCc
Q 006203 314 VDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDAND 393 (657)
Q Consensus 314 VDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D 393 (657)
+|++.+++-.- +.+ . ..+.-++++|.+|++-+ ++++-+.+-+ +|+.. .+
T Consensus 79 ad~i~v~~~~~--~~~--~---------------------~~~~~~~~~~~~i~~~~-~~~~pv~iy~--~p~~~---~~ 127 (201)
T cd00945 79 ADEIDVVINIG--SLK--E---------------------GDWEEVLEEIAAVVEAA-DGGLPLKVIL--ETRGL---KT 127 (201)
T ss_pred CCEEEEeccHH--HHh--C---------------------CCHHHHHHHHHHHHHHh-cCCceEEEEE--ECCCC---CC
Confidence 99999986431 111 0 03456788888888877 6787777765 46544 12
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcC-CCCccccC
Q 006203 394 TAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCN-EAPFYTLG 450 (657)
Q Consensus 394 ~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~-~APfYvLG 450 (657)
...+.++++.+.+.|+..+=..+|..+=+-=-..++..++.+. +.||.++|
T Consensus 128 ------~~~~~~~~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~g 179 (201)
T cd00945 128 ------ADEIAKAARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAG 179 (201)
T ss_pred ------HHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEEC
Confidence 2334566677778899988887774321111123344444443 45676665
No 10
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=91.31 E-value=5 Score=40.86 Aligned_cols=175 Identities=21% Similarity=0.144 Sum_probs=92.3
Q ss_pred HHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCC-Cc----cc-------cchhhhHHH--H-h-cCccCCCCHHHHHH
Q 006203 241 YKVQWATMWGADTVMDLSTGRHIHETREWILRNSA-VP----VG-------TVPIYQALE--K-V-DGIAENLSWEVFRD 304 (657)
Q Consensus 241 eKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~nsp-vP----VG-------TVPIYqA~~--k-~-~g~~~~lt~e~~~d 304 (657)
.-++.++..|.-||+|........ .|+.+.+... -| -| ..+-|.... + . .....--+.+++++
T Consensus 46 ~~~~~~l~~GvTtv~d~g~~~~~~-~~~~~~~g~~~gPr~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (342)
T cd01299 46 RQARAALRAGFTTVRDAGGADYGL-LRDAIDAGLIPGPRVFASGRALSQTGGHGDPRGLSGLFPAGGLAAVVDGVEEVRA 124 (342)
T ss_pred HHHHHHHhCCCcEEEeCCCcchHH-HHHHHHcCCccCCceeecchhhcccCCCCccccccccccccCCcceecCHHHHHH
Confidence 468889999999999998665555 7877766542 11 01 111110000 0 0 00111225788999
Q ss_pred HHHHHHhcCCCEEEEec-c-------------cccccccc---ccCcc-cCcccc-ccHHHHHHHHHcCCcCchhhhH--
Q 006203 305 TLIEQAEQGVDYFTIHA-G-------------VLLRYIPL---TAKRM-TGIVSR-GGSIHAKWCLAYHKENFAYEHW-- 363 (657)
Q Consensus 305 ~ieeQAeqGVDf~TIHa-G-------------v~~~~v~~---~~~Rv-tgIVSR-GGSi~a~Wml~h~~ENplY~~F-- 363 (657)
.+++++++|+|++-+.. | ++.+.+.. ...+. ..+..- .|.-...+++..+... .+|.
T Consensus 125 ~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i~~~l~~G~~~--i~H~~~ 202 (342)
T cd01299 125 AVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAYGAEAIRRAIRAGVDT--IEHGFL 202 (342)
T ss_pred HHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCE--EeecCC
Confidence 99999999999998775 2 22233321 11110 111111 1222233444333221 2332
Q ss_pred --HHHHHHHhHhceeEec---------cCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe
Q 006203 364 --DEILDICNQYDVALSI---------GDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN 419 (657)
Q Consensus 364 --D~ileI~k~YDVtlSL---------GDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMI 419 (657)
|+.++.+++.++.++. ++..+.|...+..+.. -.++...-..+++++++||.|.+
T Consensus 203 ~~~~~~~~l~~~g~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~Gv~v~~ 268 (342)
T cd01299 203 IDDETIELMKEKGIFLVPTLATYEALAAEGAAPGLPADSAEKV-ALVLEAGRDALRRAHKAGVKIAF 268 (342)
T ss_pred CCHHHHHHHHHCCcEEeCcHHHHHHHHhhccccCCCHHHHHHH-HHHHHHHHHHHHHHHHcCCeEEE
Confidence 6788999999998763 2222333221111111 11244455778899999999887
No 11
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=89.12 E-value=5.5 Score=42.87 Aligned_cols=152 Identities=16% Similarity=0.129 Sum_probs=91.7
Q ss_pred CCCCHHHHHHHHHcCC-------CHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeeccccCCCCCChHHHHHH
Q 006203 170 GVITEEMLYCATREKL-------DPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYK 242 (657)
Q Consensus 170 GiIT~EMe~VA~~E~i-------~pE~vR~~VA~Gr~VIPaN~nh~~~~p~~IG~~l~tKVNANIGtS~~~~~ie~EveK 242 (657)
..|+.+|..+|.+.|. ++|..-+.| +.. + +. ++ =+|+++|++. ++.|+
T Consensus 44 t~in~~LA~~a~~~G~~~i~hK~~~E~~~sfv-------rk~-k-~~--------~L--~v~~SvG~t~------e~~~r 98 (321)
T TIGR01306 44 TIIDEKLAEQLAENGYFYIMHRFDEESRIPFI-------KDM-Q-ER--------GL--FASISVGVKA------CEYEF 98 (321)
T ss_pred hhhhHHHHHHHHHcCCEEEEecCCHHHHHHHH-------Hhc-c-cc--------cc--EEEEEcCCCH------HHHHH
Confidence 3789999999999984 888766653 222 1 11 12 4788998875 66788
Q ss_pred HHHHHHhC--CCEee-ecCCCCChHH--HHHHHHhcCCCc---cccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCC
Q 006203 243 VQWATMWG--ADTVM-DLSTGRHIHE--TREWILRNSAVP---VGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGV 314 (657)
Q Consensus 243 l~~A~~~G--ADtvM-DLSTGgdi~~--~R~~Il~nspvP---VGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGV 314 (657)
+..-++.| +|.|- |.+-|-...- +=+||-+..|+| .|.|= |.+...+. .+.|+
T Consensus 99 ~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~---------------t~e~a~~l----~~aGa 159 (321)
T TIGR01306 99 VTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVG---------------TPEAVREL----ENAGA 159 (321)
T ss_pred HHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCC---------------CHHHHHHH----HHcCc
Confidence 88888888 79765 8888854433 346677777766 34332 33333333 35799
Q ss_pred CEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCC
Q 006203 315 DYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPG 386 (657)
Q Consensus 315 Df~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG 386 (657)
|.+.++-|--+-..-+ -.+|+-. ..|.+ .-|.|+.+..++.+=.-=|+|-|
T Consensus 160 d~I~V~~G~G~~~~tr---~~~g~g~------~~~~l------------~ai~ev~~a~~~pVIadGGIr~~ 210 (321)
T TIGR01306 160 DATKVGIGPGKVCITK---IKTGFGT------GGWQL------------AALRWCAKAARKPIIADGGIRTH 210 (321)
T ss_pred CEEEECCCCCccccce---eeeccCC------CchHH------------HHHHHHHHhcCCeEEEECCcCcH
Confidence 9998885422211000 0144411 25653 67888888877764333345544
No 12
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=88.76 E-value=7.8 Score=37.40 Aligned_cols=133 Identities=14% Similarity=0.140 Sum_probs=79.4
Q ss_pred CChHHHHHHHHHHHHhCCCEeeecCCCC-ChHHHHHHHHh--cCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHH--
Q 006203 234 SSIEEEVYKVQWATMWGADTVMDLSTGR-HIHETREWILR--NSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIE-- 308 (657)
Q Consensus 234 ~~ie~EveKl~~A~~~GADtvMDLSTGg-di~~~R~~Il~--nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~iee-- 308 (657)
+.++..++. -.++|-..|+.|+.-. +...+.+.=++ ..|++-+.+|-++.+++ |++.+.+
T Consensus 27 ~~~~~~l~~---L~~~gI~~Iv~l~~~~~~~~~~~~~gi~~~~~p~~D~~~P~~~~i~~------------~~~~i~~~~ 91 (166)
T PTZ00242 27 SNLPLYIKE---LQRYNVTHLVRVCGPTYDAELLEKNGIEVHDWPFDDGAPPPKAVIDN------------WLRLLDQEF 91 (166)
T ss_pred ccHHHHHHH---HHhCCCeEEEecCCCCCCHHHHHHCCCEEEecCCCCCCCCCHHHHHH------------HHHHHHHHH
Confidence 345555444 4578999999997643 32222221122 33555567776654433 3333332
Q ss_pred --HHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCC
Q 006203 309 --QAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPG 386 (657)
Q Consensus 309 --QAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG 386 (657)
+.++| .-+.|||- +| +||.|.|++.|++.++.- ..++.++..++. |||
T Consensus 92 ~~~~~~g-~~V~VHC~---------aG-----igRSgt~~a~yL~~~~~~-----s~~eAi~~vr~~----------R~~ 141 (166)
T PTZ00242 92 AKQSTPP-ETIAVHCV---------AG-----LGRAPILVALALVEYGGM-----EPLDAVGFVREK----------RKG 141 (166)
T ss_pred HhhccCC-CeEEEECC---------CC-----CCHHHHHHHHHHHHhCCC-----CHHHHHHHHHHH----------CCC
Confidence 22223 34789992 22 589999999999987642 467777777765 999
Q ss_pred CccCCCcHHHHHHHHHHHHHHHHHHhcCCeEE
Q 006203 387 SIYDANDTAQFAELLTQGELTRRAWDKDVQVM 418 (657)
Q Consensus 387 ~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVM 418 (657)
++ + ..|..=| .+..++-+++|+.+|
T Consensus 142 ~i---~-~~Q~~~l---~~~~~~~~~~~~~~~ 166 (166)
T PTZ00242 142 AI---N-QTQLQFL---KKYKPRKKAAGCTIM 166 (166)
T ss_pred Cc---h-HHHHHHH---HHHHHHhccCCCccC
Confidence 98 3 4576555 444456666666554
No 13
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=88.44 E-value=11 Score=42.51 Aligned_cols=171 Identities=13% Similarity=0.118 Sum_probs=97.9
Q ss_pred CCCHHHHHHHHHHH-----HhcC----CCEEEEecccc-ccccc----cc---cCcccCccccccHHHHHHHHHcCCcCc
Q 006203 296 NLSWEVFRDTLIEQ-----AEQG----VDYFTIHAGVL-LRYIP----LT---AKRMTGIVSRGGSIHAKWCLAYHKENF 358 (657)
Q Consensus 296 ~lt~e~~~d~ieeQ-----AeqG----VDf~TIHaGv~-~~~v~----~~---~~RvtgIVSRGGSi~a~Wml~h~~ENp 358 (657)
.|+.+.+...++.- .+.| +|++.|++.-. .+.+. .. .+.-.-|-|.=-..+.+=..+-...+|
T Consensus 101 ~l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~dp~~v~~~Vk~V~~~~dvPLSIDT~dpevleaAleagad~~p 180 (450)
T PRK04165 101 TMDDEEIDARLKKINNFQFERVGEILKLDMVALRNASGDPEKFAKAVKKVAETTDLPLILCSEDPAVLKAALEVVADRKP 180 (450)
T ss_pred CCChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEeCCCHHHHHHHHHhcCCCCc
Confidence 35555555555544 5566 88888888432 22122 11 123333444333444443333323333
Q ss_pred h-----hhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHH
Q 006203 359 A-----YEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPEN 433 (657)
Q Consensus 359 l-----Y~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~N 433 (657)
+ +++|+++++++++|++.+-+ .+ .| |..|-+|++++.++|+.=+|=-||.--+-+=-+|
T Consensus 181 lI~Sat~dN~~~m~~la~~yg~pvVv--------~~--~d------l~~L~~lv~~~~~~GI~dIILDPg~ggf~ksl~~ 244 (450)
T PRK04165 181 LLYAATKENYEEMAELAKEYNCPLVV--------KA--PN------LEELKELVEKLQAAGIKDLVLDPGTENIKETLDD 244 (450)
T ss_pred eEEecCcchHHHHHHHHHHcCCcEEE--------Ec--hh------HHHHHHHHHHHHHcCCCcEEECCCCchhhhhHHH
Confidence 2 47899999999999998877 11 12 6788899999999999888888888544444466
Q ss_pred HHHHHHhcCCCCccccC-ccccccCCCc--hhHHHhHHHHHhhhcccceeee
Q 006203 434 MQKQLEWCNEAPFYTLG-PLTTDIAPGY--DHITSAIGAANIGALGTALLCY 482 (657)
Q Consensus 434 v~lqk~lC~~APfYvLG-PLvTDIApGY--DHITsAIGaA~aa~~GadfLCY 482 (657)
+.+-+++.=..=|=.|| |+.+...--+ |..--|+-|++--..|+|.++.
T Consensus 245 ~~~iRr~Al~~~~~~lgyPil~~~s~k~~~~~~~E~~~As~~~~kya~i~Vl 296 (450)
T PRK04165 245 FVQIRRAAIKKGDRPLGYPIIAFPIEAWMSDPMKEAAIASTLIAKYADILVL 296 (450)
T ss_pred HHHHHhhhhhcccccCCCCEEEcchhhcccchHHHHHHHHHHHHhCCcEEEE
Confidence 66555552222345567 7666544211 3444444444444445554443
No 14
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=88.08 E-value=2.5 Score=41.61 Aligned_cols=80 Identities=9% Similarity=0.014 Sum_probs=56.6
Q ss_pred hhhHHHHHHHHhHhcee-EeccCCCCCCCccCCCcHHHHHHH--HHHHHHHHHHHhcCCeEEee--CCCCCC---CCchH
Q 006203 360 YEHWDEILDICNQYDVA-LSIGDGLRPGSIYDANDTAQFAEL--LTQGELTRRAWDKDVQVMNE--GPGHIP---MHKIP 431 (657)
Q Consensus 360 Y~~FD~ileI~k~YDVt-lSLGDGLRPG~i~DA~D~AQ~~EL--~~LGEL~krA~e~gVQVMIE--GPGHVP---l~~I~ 431 (657)
-++|++.+++|++.++. +.+.-|-.|+ ..+..+..+. ..|.+|++.|.+.||.+.+| .|-+.| ++-..
T Consensus 83 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~----~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~~~~l~t~~ 158 (254)
T TIGR03234 83 REGVALAIAYARALGCPQVNCLAGKRPA----GVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMPGFFLTTTE 158 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcCCCCC----CCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCCCChhcCHH
Confidence 47888999999999984 4566554443 3333343333 57899999999999999999 443333 66777
Q ss_pred HHHHHHHHhcCC
Q 006203 432 ENMQKQLEWCNE 443 (657)
Q Consensus 432 ~Nv~lqk~lC~~ 443 (657)
+-+++.+++.+.
T Consensus 159 ~~~~li~~v~~~ 170 (254)
T TIGR03234 159 QALAVIDDVGRE 170 (254)
T ss_pred HHHHHHHHhCCC
Confidence 778888776653
No 15
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=87.83 E-value=0.26 Score=54.23 Aligned_cols=173 Identities=20% Similarity=0.184 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhcCCeEEeeC---CCCCC-------CCchHHHHHHHH-HhcCCCCccccCccccccCCCchhHHHhHHH
Q 006203 401 LTQGELTRRAWDKDVQVMNEG---PGHIP-------MHKIPENMQKQL-EWCNEAPFYTLGPLTTDIAPGYDHITSAIGA 469 (657)
Q Consensus 401 ~~LGEL~krA~e~gVQVMIEG---PGHVP-------l~~I~~Nv~lqk-~lC~~APfYvLGPLvTDIApGYDHITsAIGa 469 (657)
....+|.+.+.+++|-.-.=- ||-+. +.++..+-+|-| -+=++.--.+=||= ---.|-|-+-+=-
T Consensus 204 ~~fd~lleI~k~yDvtlSLGDglRPG~i~DA~D~aQ~~EL~tlgeL~krA~~~gVQvmvEGPG----Hvpl~~I~~nv~l 279 (432)
T COG0422 204 EHFDELLEIFKEYDVTLSLGDGLRPGCIADANDEAQFAELITLGELTKRAWEAGVQVMVEGPG----HVPLNEIEANVKL 279 (432)
T ss_pred hhHHHHHHHHHHhCeeeeccCCCCCCcccCCccHHHHHHHHHHHHHHHHHHHcCCEEEEECCC----cCcHHHHHHHHHH
Confidence 346788999999999765522 66665 223333334433 33455566666661 0112334444333
Q ss_pred HHhhhcccceeeecCchhhcC-CC-----ChhHHHHHHHHHHHHHhHhhhhc--------CCcchh--------------
Q 006203 470 ANIGALGTALLCYVTPKEHLG-LP-----NRDDVKAGVIAYKIAAHAADLAK--------GHPLAQ-------------- 521 (657)
Q Consensus 470 A~aa~~GadfLCYVTPaEHLg-LP-----~~eDVkeGViA~kIAAHaaDlaK--------g~p~A~-------------- 521 (657)
-.---.||-| --|| || .-|.+-.++=|+-+|+.-+|.-= |.|...
T Consensus 280 ~k~~c~~aPf-------YvLGPLvTDIApGYDHItsAIGaA~aa~~Gad~LCYVTPaEHL~LP~~eDV~eGvIa~kIAAH 352 (432)
T COG0422 280 QKELCDGAPF-------YVLGPLVTDIAPGYDHITSAIGAAMAAWAGADMLCYVTPAEHLGLPNVEDVKEGVIAYKIAAH 352 (432)
T ss_pred HHHhcCCCCe-------eeeCCcccccCCCchHHHHHHHHHHHHhccCceEEecCcHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 3333445544 2355 43 34555555555556666566532 233221
Q ss_pred hHHHHHHH-HHhhcChHHHHhh---cCChHHHHhhh--hc----cCCCCCCCCCCcccCCCCCcchhhhhHHHHHH
Q 006203 522 TWDDALSK-ARFEFRWMDQFAL---SLDPMTAMSFH--DE----TLPSEGAKVAHFCSMCGPKFCSMKITEDVRKY 587 (657)
Q Consensus 522 ~rD~~mSk-AR~~~dWe~Qf~L---alDPe~Ar~~~--~e----~~p~~~~k~~~~CSMCGp~fCamki~~~~~~~ 587 (657)
.=| ++| -+..-+|++-+.. .||-|+--+.- .+ -..+-..++.+.||||| ++|++|+.++....
T Consensus 353 aaD--~aK~~~~a~~~D~~ms~aR~~~dWe~qf~lalDpe~Ar~~~~e~~p~~~~~csmcg-~~C~~k~~~~~~~~ 425 (432)
T COG0422 353 AAD--LAKGHPGARDRDDAMSKARFEFDWEDQFELALDPERARAYHDETLPEESDKCAMCG-SMCAPKFCSMKISQ 425 (432)
T ss_pred HHH--HhccCcchhhhhHHHHHHHHhCCHHHHHHHhcChHHHHHHhhccCCCCcchhhhhh-cccCHHHHHHHHhH
Confidence 112 223 2355578876553 35555432221 11 12233345677999999 99999999876543
No 16
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=87.35 E-value=3.2 Score=38.24 Aligned_cols=78 Identities=21% Similarity=0.164 Sum_probs=48.9
Q ss_pred CChHHHHHHHHHHHHhCCCEeeecCCCC-----ChHHHHH---HHHhcC--CCc--cccchhhhHHHHhcCccCCCCHHH
Q 006203 234 SSIEEEVYKVQWATMWGADTVMDLSTGR-----HIHETRE---WILRNS--AVP--VGTVPIYQALEKVDGIAENLSWEV 301 (657)
Q Consensus 234 ~~ie~EveKl~~A~~~GADtvMDLSTGg-----di~~~R~---~Il~ns--pvP--VGTVPIYqA~~k~~g~~~~lt~e~ 301 (657)
...++=++.++.|.++|||.||=...-. +.+++.+ .|.+.+ .+| +...|--. ++.+.
T Consensus 62 ~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~-----------~~~~~ 130 (201)
T cd00945 62 TTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGL-----------KTADE 130 (201)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC-----------CCHHH
Confidence 5578888999999999999998543321 1233333 455542 233 33333211 46777
Q ss_pred HHHHHHHHHhcCCCEEEEecc
Q 006203 302 FRDTLIEQAEQGVDYFTIHAG 322 (657)
Q Consensus 302 ~~d~ieeQAeqGVDf~TIHaG 322 (657)
+.+..+.-.+.|+|++-...|
T Consensus 131 ~~~~~~~~~~~g~~~iK~~~~ 151 (201)
T cd00945 131 IAKAARIAAEAGADFIKTSTG 151 (201)
T ss_pred HHHHHHHHHHhCCCEEEeCCC
Confidence 666655445689999998887
No 17
>PRK11165 diaminopimelate decarboxylase; Provisional
Probab=87.31 E-value=25 Score=38.37 Aligned_cols=206 Identities=18% Similarity=0.198 Sum_probs=120.9
Q ss_pred CHHHHHHHHHcC-----CCHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeec---------cccCCCCCChHH
Q 006203 173 TEEMLYCATREK-----LDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNAN---------IGNSAVASSIEE 238 (657)
Q Consensus 173 T~EMe~VA~~E~-----i~pE~vR~~VA~Gr~VIPaN~nh~~~~p~~IG~~l~tKVNAN---------IGtS~~~~~ie~ 238 (657)
.+.++.++++.+ ++.+.||+.+.+=+. .| . =.+-+|-|-| .|-..+.+|..|
T Consensus 14 ~~~~~~l~~~~~tP~~v~d~~~l~~n~~~l~~-~~------~-------i~yavKan~~~~il~~~~~~G~g~dvaS~~E 79 (420)
T PRK11165 14 AENLLRLPAEYGTPLWVYDADIIRRRIAQLRQ-FD------V-------IRFAQKACSNIHILRLMREQGVKVDAVSLGE 79 (420)
T ss_pred CcCHHHHHHHhCCCEEEEcHHHHHHHHHHHhc-cC------c-------ceEEehhCCCHHHHHHHHHcCCCEEEeCHHH
Confidence 345666676655 688888888776443 22 1 1267788876 355566666655
Q ss_pred HHHHHHHHHHhCCC------EeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHh----------cC--cc------
Q 006203 239 EVYKVQWATMWGAD------TVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKV----------DG--IA------ 294 (657)
Q Consensus 239 EveKl~~A~~~GAD------tvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~----------~g--~~------ 294 (657)
++.|.+.|.+ .|+==..++.-.++++.+=....+-+.++--.+.+.+. +- ..
T Consensus 80 ----~~~a~~~G~~~~~~~~~Ii~~gp~k~~~~l~~a~~~gv~i~vDs~~el~~i~~~~~~~~v~lRvn~~~~~~~~~~~ 155 (420)
T PRK11165 80 ----IERALAAGYKPGTEPDEIVFTADVIDRATLARVVELKIPVNAGSIDMLDQLGQVSPGHRVWLRINPGFGHGHSQKT 155 (420)
T ss_pred ----HHHHHHcCCCCCCCCCeEEEeCCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHhcCCCcEEEEECCCCCCCCCCce
Confidence 5667778876 57777777788888887655545555555444444321 10 00
Q ss_pred --------CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHH
Q 006203 295 --------ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEI 366 (657)
Q Consensus 295 --------~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~i 366 (657)
--++.+++.+.+..-.+.|+++..||+=+-- ++ + ... +-+..+.+
T Consensus 156 ~~~~~~sKFGi~~~~~~~~~~~~~~~~l~l~GlH~H~GS-----------~~-~-----~~~----------~~~~~~~l 208 (420)
T PRK11165 156 NTGGENSKHGIWHEDLPAALAVIQRYGLKLVGIHMHIGS-----------GV-D-----YGH----------LEQVCGAM 208 (420)
T ss_pred ecCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeccC-----------CC-C-----hHH----------HHHHHHHH
Confidence 1345666665555545568999888874321 11 1 011 23344788
Q ss_pred HHHHhHhcee---EeccCCCCCCCccC---CCcHHHHHHHH-HHHHHHHHHHhcCCeEEeeCCCCC
Q 006203 367 LDICNQYDVA---LSIGDGLRPGSIYD---ANDTAQFAELL-TQGELTRRAWDKDVQVMNEGPGHI 425 (657)
Q Consensus 367 leI~k~YDVt---lSLGDGLRPG~i~D---A~D~AQ~~EL~-~LGEL~krA~e~gVQVMIEGPGHV 425 (657)
+++++++.+. |++|-|+ |....+ ..|-.++.+++ .+.+..+.....++++++| ||..
T Consensus 209 ~~~~~~~g~~~~~IdiGGGf-~~~y~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~E-PGR~ 272 (420)
T PRK11165 209 VRQVIELGQDIEAISAGGGL-SIPYREGEEPVDTEHYFGLWDAARKRIARHLGHPVKLEIE-PGRF 272 (420)
T ss_pred HHHHHHhCCCCcEEEeCCCc-ccCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCceEEEc-cCcc
Confidence 8899998876 8999999 222222 13555555532 2233333333457899888 6654
No 18
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=87.27 E-value=19 Score=33.06 Aligned_cols=110 Identities=14% Similarity=0.050 Sum_probs=69.4
Q ss_pred HhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcC----chhhhHHHHHHHHhHhc---eeEeccCC
Q 006203 310 AEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKEN----FAYEHWDEILDICNQYD---VALSIGDG 382 (657)
Q Consensus 310 AeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~EN----plY~~FD~ileI~k~YD---VtlSLGDG 382 (657)
-+.||....+|+.......... +..+| ...+++.+.+++|++.+ +++.+|.
T Consensus 37 ~~~gl~i~~~~~~~~~~~~~~~---------------------~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~~~g~- 94 (213)
T PF01261_consen 37 EDYGLKIASLHPPTNFWSPDEE---------------------NGSANDEREEALEYLKKAIDLAKRLGAKYIVVHSGR- 94 (213)
T ss_dssp HHTTCEEEEEEEEESSSCTGTT---------------------STTSSSHHHHHHHHHHHHHHHHHHHTBSEEEEECTT-
T ss_pred HHcCCeEEEEeccccccccccc---------------------ccCcchhhHHHHHHHHHHHHHHHHhCCCceeecCcc-
Confidence 3459998888876544333221 11122 23788999999999999 5666663
Q ss_pred CCCCCccCCCcHHHHHH-HHHHHHHHHHHHhcCCeEEeeCCCCCCCCch---HHHHHHHHHhcCC
Q 006203 383 LRPGSIYDANDTAQFAE-LLTQGELTRRAWDKDVQVMNEGPGHIPMHKI---PENMQKQLEWCNE 443 (657)
Q Consensus 383 LRPG~i~DA~D~AQ~~E-L~~LGEL~krA~e~gVQVMIEGPGHVPl~~I---~~Nv~lqk~lC~~ 443 (657)
+ +.-.....+.++.. ...|.+|.++|.++||.+.+|--+..+..-. ++-.++-+++-+.
T Consensus 95 -~-~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (213)
T PF01261_consen 95 -Y-PSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFSETPFSVEEIYRLLEEVDSP 157 (213)
T ss_dssp -E-SSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEESSHHHHHHHHHHHTTT
T ss_pred -c-ccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccccchhhHHHHHHHHhhcCCC
Confidence 1 01111222223333 3478999999999999999998766665444 7777777776653
No 19
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=86.44 E-value=19 Score=37.53 Aligned_cols=63 Identities=25% Similarity=0.413 Sum_probs=33.2
Q ss_pred hhhhHHHHHHHHhH---hce---eEeccCCCCCCCccCC---CcHHHHHHHHHHHHHHHHHH--hcCCeEEeeCCCCC
Q 006203 359 AYEHWDEILDICNQ---YDV---ALSIGDGLRPGSIYDA---NDTAQFAELLTQGELTRRAW--DKDVQVMNEGPGHI 425 (657)
Q Consensus 359 lY~~FD~ileI~k~---YDV---tlSLGDGLRPG~i~DA---~D~AQ~~EL~~LGEL~krA~--e~gVQVMIEGPGHV 425 (657)
+.+.++++.+++.+ +.+ .|++|.|+ |..-.+. .|-.++++. +.++.+... ..++++++| ||..
T Consensus 186 ~~~~~~~~~~~~~~l~~~g~~~~~idiGGG~-~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~l~~E-pGR~ 259 (373)
T cd06828 186 FVEAAEKLLDLAAELRELGIDLEFLDLGGGL-GIPYRDEDEPLDIEEYAEA--IAEALKELCEGGPDLKLIIE-PGRY 259 (373)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEeCCCC-CcccCCCCCCCCHHHHHHH--HHHHHHHHHccCCCceEEEe-cCcc
Confidence 44455555555444 343 49999999 4332221 244444332 233333332 248999998 6653
No 20
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=85.98 E-value=5.7 Score=39.80 Aligned_cols=78 Identities=17% Similarity=0.141 Sum_probs=45.6
Q ss_pred hhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHH-HHHHHHHHHHHHhcCCeEEeeCCCCCC---CCchHHHHHH
Q 006203 361 EHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAE-LLTQGELTRRAWDKDVQVMNEGPGHIP---MHKIPENMQK 436 (657)
Q Consensus 361 ~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~E-L~~LGEL~krA~e~gVQVMIEGPGHVP---l~~I~~Nv~l 436 (657)
++|.+.|++|++.++..- .+-||...+..++..+.. +..|.+|++.|.++||++-||--+..+ .+....-.++
T Consensus 85 ~~~~~~i~~A~~lG~~~v---~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~~~~~~t~~~~~~l 161 (279)
T cd00019 85 ERLKDEIERCEELGIRLL---VFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQGNEIGSSFEELKEI 161 (279)
T ss_pred HHHHHHHHHHHHcCCCEE---EECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCCCCCHHHHHHH
Confidence 455555555555554421 122232222222333333 356888889999999999999755554 5666666777
Q ss_pred HHHhc
Q 006203 437 QLEWC 441 (657)
Q Consensus 437 qk~lC 441 (657)
.++++
T Consensus 162 i~~v~ 166 (279)
T cd00019 162 IDLIK 166 (279)
T ss_pred HHhcC
Confidence 77765
No 21
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=85.47 E-value=9.7 Score=41.05 Aligned_cols=109 Identities=18% Similarity=0.246 Sum_probs=65.7
Q ss_pred CCCCHHHHHHHHHcC-------CCHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeeccccCCCCCChHHHHHH
Q 006203 170 GVITEEMLYCATREK-------LDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYK 242 (657)
Q Consensus 170 GiIT~EMe~VA~~E~-------i~pE~vR~~VA~Gr~VIPaN~nh~~~~p~~IG~~l~tKVNANIGtS~~~~~ie~EveK 242 (657)
..|..+|..+|.+.| +++|.....+ |-+ | |. +| -||+++|++.+ +.++
T Consensus 47 t~iN~~LA~~a~~~G~~~~~~k~~~e~~~~~~---r~~-----~-----~~----~l--~v~~~vg~~~~------~~~~ 101 (326)
T PRK05458 47 TIIDEKIAEWLAENGYFYIMHRFDPEARIPFI---KDM-----H-----EQ----GL--IASISVGVKDD------EYDF 101 (326)
T ss_pred chhHHHHHHHHHHcCCEEEEecCCHHHHHHHH---Hhc-----c-----cc----cc--EEEEEecCCHH------HHHH
Confidence 378899999999987 4777766666 211 1 11 23 47999987652 3455
Q ss_pred HHHHHHhCC--CEee-ecCCCC--ChHHHHHHHHhcCC---CccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCC
Q 006203 243 VQWATMWGA--DTVM-DLSTGR--HIHETREWILRNSA---VPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGV 314 (657)
Q Consensus 243 l~~A~~~GA--DtvM-DLSTGg--di~~~R~~Il~nsp---vPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGV 314 (657)
+..-+++|+ |.|- |.+-|. .+.++=++|-+..| |.+|+|= |.|+..+ -.+.||
T Consensus 102 ~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~---------------t~e~a~~----l~~aGa 162 (326)
T PRK05458 102 VDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVG---------------TPEAVRE----LENAGA 162 (326)
T ss_pred HHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecC---------------CHHHHHH----HHHcCc
Confidence 555566655 9885 776652 23334445555544 4455543 3333322 256899
Q ss_pred CEEEEecc
Q 006203 315 DYFTIHAG 322 (657)
Q Consensus 315 Df~TIHaG 322 (657)
|++.+|-|
T Consensus 163 d~i~vg~~ 170 (326)
T PRK05458 163 DATKVGIG 170 (326)
T ss_pred CEEEECCC
Confidence 99877654
No 22
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=85.28 E-value=10 Score=40.85 Aligned_cols=119 Identities=13% Similarity=0.074 Sum_probs=77.4
Q ss_pred HHHHHHH-hcCCCEEEEe-ccccccc-------cccccCcc-----cCc-------cccccHHHHHHHHHcCCcCch---
Q 006203 304 DTLIEQA-EQGVDYFTIH-AGVLLRY-------IPLTAKRM-----TGI-------VSRGGSIHAKWCLAYHKENFA--- 359 (657)
Q Consensus 304 d~ieeQA-eqGVDf~TIH-aGv~~~~-------v~~~~~Rv-----tgI-------VSRGGSi~a~Wml~h~~ENpl--- 359 (657)
+.-.+|. +.|.||+.|| +|...+. +....+++ ..+ .|.=-..|.+=....+.+|||
T Consensus 79 ~~Ak~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInS 158 (319)
T PRK04452 79 AWAKKCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGS 158 (319)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEE
Confidence 3445777 9999999999 5665531 11111111 122 234466787777777778887
Q ss_pred --hhhHHHHHHHHhHhceeE-eccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCC--eEEeeCCCCCCC----Cch
Q 006203 360 --YEHWDEILDICNQYDVAL-SIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDV--QVMNEGPGHIPM----HKI 430 (657)
Q Consensus 360 --Y~~FD~ileI~k~YDVtl-SLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gV--QVMIEGPGHVPl----~~I 430 (657)
.++|++++++|++|+..+ .+. ..+|..+-+|++++.++|| +=+|=-|+=-|+ .+.
T Consensus 159 at~en~~~i~~lA~~y~~~Vva~s----------------~~Dln~ak~L~~~l~~~Gi~~edIviDP~~~~lg~g~e~~ 222 (319)
T PRK04452 159 AEEDNYKKIAAAAMAYGHAVIAWS----------------PLDINLAKQLNILLTELGVPRERIVMDPTTGALGYGIEYS 222 (319)
T ss_pred CCHHHHHHHHHHHHHhCCeEEEEc----------------HHHHHHHHHHHHHHHHcCCCHHHEEEeCCcccccCCHHHH
Confidence 479999999999999743 333 2227788889999999999 666666766543 334
Q ss_pred HHHHHHHH
Q 006203 431 PENMQKQL 438 (657)
Q Consensus 431 ~~Nv~lqk 438 (657)
-++|...+
T Consensus 223 ~~~~e~IR 230 (319)
T PRK04452 223 YSVMERIR 230 (319)
T ss_pred HHHHHHHH
Confidence 44444433
No 23
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=85.16 E-value=50 Score=35.19 Aligned_cols=171 Identities=18% Similarity=0.164 Sum_probs=94.2
Q ss_pred HHHHHHcC------CCHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeec---------cccCCCCCChHHHHH
Q 006203 177 LYCATREK------LDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNAN---------IGNSAVASSIEEEVY 241 (657)
Q Consensus 177 e~VA~~E~------i~pE~vR~~VA~Gr~VIPaN~nh~~~~p~~IG~~l~tKVNAN---------IGtS~~~~~ie~Eve 241 (657)
+.++++-| ++++.||+.+.+=+-.+|.+. + =.+-+|-|++ -|..-+.+|+.|
T Consensus 16 ~~l~~~~g~tP~~v~d~~~l~~n~~~l~~~~~~~~-----~-----i~yavKaN~~~~vl~~l~~~g~g~dvaS~~E--- 82 (398)
T TIGR03099 16 TELAARAGGTPFYAYDRGLVSERVAALRKALPEEL-----A-----IHYAVKANPMPALLAHMAPLVDGFDVASAGE--- 82 (398)
T ss_pred HHHHHHhCCCCEEEEeHHHHHHHHHHHHHhccccC-----c-----EEEEeccCCCHHHHHHHHHcCCcEEEeCHHH---
Confidence 45555555 577888877776554555321 1 1235666655 344455555544
Q ss_pred HHHHHHHhCCC--EeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHh--------------c--------C-----
Q 006203 242 KVQWATMWGAD--TVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKV--------------D--------G----- 292 (657)
Q Consensus 242 Kl~~A~~~GAD--tvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~--------------~--------g----- 292 (657)
++.|.+.|.+ .|+=...++...+++..+-.+..+-|-+..-.+.+.+. + |
T Consensus 83 -~~~~~~~G~~~~~I~~~gp~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~~~~~~v~LRin~~~~~~~~~~~~~~ 161 (398)
T TIGR03099 83 -LAVALDTGYDPGCISFAGPGKTDAELRRALAAGVLINVESLRELNRLAALSEALGLRARVAVRVNPDFELKGSGMKMGG 161 (398)
T ss_pred -HHHHHHcCCChhHEEEeCCCCCHHHHHHHHhCCCEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCCCCCCCcccccCC
Confidence 4456677876 57777777888888887655555555554444333211 1 0
Q ss_pred --ccCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHH
Q 006203 293 --IAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDIC 370 (657)
Q Consensus 293 --~~~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~ 370 (657)
.---++.+++.+.++.-.+.|+.+..||+=+.-+. .+-. .+... +...|+.++++.
T Consensus 162 ~~srFGi~~~e~~~~~~~~~~~~l~l~Glh~h~gs~~-----------~~~~-~~~~~----------~~~~~~~~~~~~ 219 (398)
T TIGR03099 162 GAKQFGIDAEQVPAALAFIKAADLDFQGFHIFAGSQN-----------LNAE-AIIEA----------QAKTLALALRLA 219 (398)
T ss_pred CCCcCCCCHHHHHHHHHHHHhCCCeEEEEEecccccC-----------CCHH-HHHHH----------HHHHHHHHHHHH
Confidence 00134566666665554445777766664322111 0100 11111 234567777888
Q ss_pred hHhce---eEeccCCC
Q 006203 371 NQYDV---ALSIGDGL 383 (657)
Q Consensus 371 k~YDV---tlSLGDGL 383 (657)
+++.+ .|++|-|+
T Consensus 220 ~~~g~~~~~idiGGG~ 235 (398)
T TIGR03099 220 ESAPAPVRVINIGGGF 235 (398)
T ss_pred HHhCCCCCEEEeCCcc
Confidence 87665 58999998
No 24
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=84.95 E-value=16 Score=39.28 Aligned_cols=28 Identities=21% Similarity=0.089 Sum_probs=15.1
Q ss_pred CChHHHHHHHHhc-CCCccccchhhhHHH
Q 006203 261 RHIHETREWILRN-SAVPVGTVPIYQALE 288 (657)
Q Consensus 261 gdi~~~R~~Il~n-spvPVGTVPIYqA~~ 288 (657)
..+.+.++.+-+. +.+-++..+.+-++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~h~~l~ 150 (415)
T cd01297 122 ATFAEYLDALEARPPAVNVAALVGHAALR 150 (415)
T ss_pred CCHHHHHHHHHhcCCCcCeeeccCcHHHH
Confidence 3455555555344 356666655555554
No 25
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=84.77 E-value=7.6 Score=43.87 Aligned_cols=81 Identities=23% Similarity=0.329 Sum_probs=57.0
Q ss_pred cCCceeEeeccccCCCCCChHHHHHHHHHHHHhCCCEe-eecCCCCChH--HHHHHHHhcCC-Cc--cccchhhhHHHHh
Q 006203 217 RNFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTV-MDLSTGRHIH--ETREWILRNSA-VP--VGTVPIYQALEKV 290 (657)
Q Consensus 217 ~~l~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADtv-MDLSTGgdi~--~~R~~Il~nsp-vP--VGTVPIYqA~~k~ 290 (657)
..-+.-|-|-||++. +..|.++..+++|+|-| +|.+.|..+. ++=+||-+..| ++ .|+|--.+....+
T Consensus 233 ~~~~l~vgaavg~~~------~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a 306 (505)
T PLN02274 233 KDGKLLVGAAIGTRE------SDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNL 306 (505)
T ss_pred CCCCEEEEEEEcCCc------cHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHH
Confidence 344667888898854 34688888899999987 6999887777 66677766554 44 3677555544333
Q ss_pred cCccCCCCHHHHHHHHHHHHhcCCCEE--EEecc
Q 006203 291 DGIAENLSWEVFRDTLIEQAEQGVDYF--TIHAG 322 (657)
Q Consensus 291 ~g~~~~lt~e~~~d~ieeQAeqGVDf~--TIHaG 322 (657)
.+.|+|++ ++|.|
T Consensus 307 -------------------~~aGaD~i~vg~g~G 321 (505)
T PLN02274 307 -------------------IQAGVDGLRVGMGSG 321 (505)
T ss_pred -------------------HHcCcCEEEECCCCC
Confidence 67899998 45655
No 26
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=83.55 E-value=4 Score=39.99 Aligned_cols=113 Identities=25% Similarity=0.280 Sum_probs=71.2
Q ss_pred eeEeeccccCCCCCChHHHHHHHHHHHHhCCCEe---eecCC--CCChHHHHHHHHhcCCCccccch---hhhHHHHhcC
Q 006203 221 VKVNANIGNSAVASSIEEEVYKVQWATMWGADTV---MDLST--GRHIHETREWILRNSAVPVGTVP---IYQALEKVDG 292 (657)
Q Consensus 221 tKVNANIGtS~~~~~ie~EveKl~~A~~~GADtv---MDLST--Ggdi~~~R~~Il~nspvPVGTVP---IYqA~~k~~g 292 (657)
+++...+|........+.=+.-++.|++.|||.| ++.+- .++.+++.++|-+-...--| +| ||+.
T Consensus 53 ~~v~~~~~fp~g~~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g-~~lkvI~e~------ 125 (203)
T cd00959 53 VKVCTVIGFPLGATTTEVKVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGG-APLKVILET------ 125 (203)
T ss_pred cEEEEEEecCCCCCcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCC-CeEEEEEec------
Confidence 5555556555555556666666889999999976 44431 45778788777643332112 33 3442
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCCEEEEecccc-----cccccc---c-cCcccCcccccc
Q 006203 293 IAENLSWEVFRDTLIEQAEQGVDYFTIHAGVL-----LRYIPL---T-AKRMTGIVSRGG 343 (657)
Q Consensus 293 ~~~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~-----~~~v~~---~-~~RvtgIVSRGG 343 (657)
..|+.|.+....+--+|-|.||+-.=.|.. .+.+.. . ..+ ++|+-.||
T Consensus 126 --~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~~~-v~ik~aGG 182 (203)
T cd00959 126 --GLLTDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVGGR-VGVKAAGG 182 (203)
T ss_pred --CCCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCCC-ceEEEeCC
Confidence 345788899999999999999998875543 333331 1 123 47777777
No 27
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=82.41 E-value=49 Score=31.96 Aligned_cols=179 Identities=16% Similarity=0.140 Sum_probs=88.8
Q ss_pred CCCChHHHHHHHHHHHHhCCCEe----eecCCCCC---hHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHH
Q 006203 232 VASSIEEEVYKVQWATMWGADTV----MDLSTGRH---IHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRD 304 (657)
Q Consensus 232 ~~~~ie~EveKl~~A~~~GADtv----MDLSTGgd---i~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d 304 (657)
...|+..=.+.++.+.++|+|.| ||.+.-.+ .-+.-++|.+.++.+++ |++. -.+..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-v~l~--------------v~d~~~ 75 (220)
T PRK05581 11 LSADFARLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLD-VHLM--------------VENPDR 75 (220)
T ss_pred hcCCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCCCcEE-EEee--------------eCCHHH
Confidence 34455555567788899999985 56554333 23344444454443331 2221 112222
Q ss_pred HHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCc----hhhhHHHHHHHHhHhceeEecc
Q 006203 305 TLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENF----AYEHWDEILDICNQYDVALSIG 380 (657)
Q Consensus 305 ~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENp----lY~~FD~ileI~k~YDVtlSLG 380 (657)
.++.-++-|+|.+++|.+-. +..... .++++.++...= .++.++++.++...-| -+=+
T Consensus 76 ~i~~~~~~g~d~v~vh~~~~-~~~~~~---------------~~~~~~~~~~~g~~~~~~t~~e~~~~~~~~~d-~i~~- 137 (220)
T PRK05581 76 YVPDFAKAGADIITFHVEAS-EHIHRL---------------LQLIKSAGIKAGLVLNPATPLEPLEDVLDLLD-LVLL- 137 (220)
T ss_pred HHHHHHHcCCCEEEEeeccc-hhHHHH---------------HHHHHHcCCEEEEEECCCCCHHHHHHHHhhCC-EEEE-
Confidence 34555688999999999854 222111 444444443300 1345677777765556 2223
Q ss_pred CCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhc--CCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCcccc
Q 006203 381 DGLRPGSIYDANDTAQFAELLTQGELTRRAWDK--DVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTT 454 (657)
Q Consensus 381 DGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~--gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvT 454 (657)
+++.||--..+.+..-+..+..+-+++ -++ ++.|++=| | ++. +|+..-.+ .++-..+.|--++
T Consensus 138 ~~~~~g~tg~~~~~~~~~~i~~~~~~~---~~~~~~~~i~v~G-G---I~~--~nv~~l~~--~GaD~vvvgSai~ 202 (220)
T PRK05581 138 MSVNPGFGGQKFIPEVLEKIRELRKLI---DERGLDILIEVDG-G---INA--DNIKECAE--AGADVFVAGSAVF 202 (220)
T ss_pred EEECCCCCcccccHHHHHHHHHHHHHH---HhcCCCceEEEEC-C---CCH--HHHHHHHH--cCCCEEEEChhhh
Confidence 356676655544443333332222222 222 24566777 5 222 35544333 3455555554433
No 28
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=81.30 E-value=17 Score=33.43 Aligned_cols=77 Identities=17% Similarity=0.088 Sum_probs=55.8
Q ss_pred hhhHHHHHHHHhHhceeE-eccCCCCCCC----ccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCC---CCCCCchH
Q 006203 360 YEHWDEILDICNQYDVAL-SIGDGLRPGS----IYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPG---HIPMHKIP 431 (657)
Q Consensus 360 Y~~FD~ileI~k~YDVtl-SLGDGLRPG~----i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPG---HVPl~~I~ 431 (657)
-..++++.+++++|++++ ++.=..+... ..+++|+ --.-+..+-+..+.|.+.|+..|+=.+| +-+-...+
T Consensus 26 ~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~ 104 (213)
T PF01261_consen 26 DDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTE 104 (213)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHH
T ss_pred hHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHH
Confidence 568999999999999993 3332233333 3577877 6666778899999999999999999999 44455555
Q ss_pred HHHHHH
Q 006203 432 ENMQKQ 437 (657)
Q Consensus 432 ~Nv~lq 437 (657)
++.+..
T Consensus 105 ~~~~~~ 110 (213)
T PF01261_consen 105 ENWERL 110 (213)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 29
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=80.82 E-value=5.5 Score=39.24 Aligned_cols=96 Identities=16% Similarity=0.145 Sum_probs=50.9
Q ss_pred CCceeE--eeccccCCCCCChHHHHHHHHHHHHhCCCEe-eecCCCC--------ChHHHHHHHHhcCCCcc-ccchhhh
Q 006203 218 NFLVKV--NANIGNSAVASSIEEEVYKVQWATMWGADTV-MDLSTGR--------HIHETREWILRNSAVPV-GTVPIYQ 285 (657)
Q Consensus 218 ~l~tKV--NANIGtS~~~~~ie~EveKl~~A~~~GADtv-MDLSTGg--------di~~~R~~Il~nspvPV-GTVPIYq 285 (657)
++.+++ ..+||.. ..+++.-+..++.|++.|||.| |-+..|. ++.++++.- +...+|+ -.+..+.
T Consensus 57 ~~i~~~~~~~~i~~p--~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~-~~~g~~~iie~~~~g 133 (235)
T cd00958 57 PLIVKLNGSTSLSPK--DDNDKVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEA-HKYGLPLIAWMYPRG 133 (235)
T ss_pred cEEEEECCCCCCCCC--CCCchhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHH-HHcCCCEEEEEeccC
Confidence 444444 4455543 4566666667889999999976 3344443 122222221 1223332 0111110
Q ss_pred HHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEec
Q 006203 286 ALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHA 321 (657)
Q Consensus 286 A~~k~~g~~~~lt~e~~~d~ieeQAeqGVDf~TIHa 321 (657)
+ .....++.+.+....+.-++.|.||+-+..
T Consensus 134 ----~-~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~ 164 (235)
T cd00958 134 ----P-AVKNEKDPDLIAYAARIGAELGADIVKTKY 164 (235)
T ss_pred ----C-cccCccCHHHHHHHHHHHHHHCCCEEEecC
Confidence 0 011135666666667778899999999853
No 30
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=80.81 E-value=13 Score=37.73 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=55.2
Q ss_pred HHHHHH-HHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCC
Q 006203 237 EEEVYK-VQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVD 315 (657)
Q Consensus 237 e~EveK-l~~A~~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGVD 315 (657)
.++++. .+.|.+.|||-|- .|+.++++.+|+.. +.+++| ++-+ |.+..-|.+++++.+.+-.+.|++
T Consensus 155 ~~~~~~~~~~a~~~GADyik-t~~~~~~~~l~~~~-~~~~iP-----Vva~-----GGi~~~~~~~~~~~i~~~~~aGa~ 222 (258)
T TIGR01949 155 PELVAHAARLGAELGADIVK-TPYTGDIDSFRDVV-KGCPAP-----VVVA-----GGPKTNSDREFLQMIKDAMEAGAA 222 (258)
T ss_pred HHHHHHHHHHHHHHCCCEEe-ccCCCCHHHHHHHH-HhCCCc-----EEEe-----cCCCCCCHHHHHHHHHHHHHcCCc
Confidence 356777 4889999999998 67777888888654 445544 4221 555667899999999999999999
Q ss_pred EEEEeccc
Q 006203 316 YFTIHAGV 323 (657)
Q Consensus 316 f~TIHaGv 323 (657)
.+.+=..+
T Consensus 223 Gia~g~~i 230 (258)
T TIGR01949 223 GVAVGRNI 230 (258)
T ss_pred EEehhhHh
Confidence 66654443
No 31
>PRK08227 autoinducer 2 aldolase; Validated
Probab=80.45 E-value=6 Score=41.52 Aligned_cols=144 Identities=15% Similarity=0.155 Sum_probs=84.1
Q ss_pred chhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCcccc--ccHHHHHHHHHcCCcCc
Q 006203 281 VPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSR--GGSIHAKWCLAYHKENF 358 (657)
Q Consensus 281 VPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSR--GGSi~a~Wml~h~~ENp 358 (657)
||+=|-++ .|.+..| +++-.+|.+-++ |+|-+..|-|+.+.+.+... =.++|=| ||+-+. .+|
T Consensus 27 va~DHG~~--~Gp~~gl--~~~~~~~~~i~~-~~da~~~~~G~~~~~~~~~~--~~~lil~ls~~t~~~--------~~~ 91 (264)
T PRK08227 27 LAFDHGYF--QGPTTGL--ERIDINIAPLFP-YADVLMCTRGILRSVVPPAT--NKPVVLRASGGNSIL--------KEL 91 (264)
T ss_pred EECCCccc--cCCCccc--cChHHHHHHHhh-cCCEEEeChhHHHhcccccC--CCcEEEEEcCCCCCC--------CCC
Confidence 55555544 2444444 445566666666 89999999999887655321 1233322 222111 111
Q ss_pred hhhhHHHHHHHHhHhceeEeccCCCCCCCccCCC-----cHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHH
Q 006203 359 AYEHWDEILDICNQYDVALSIGDGLRPGSIYDAN-----DTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPEN 433 (657)
Q Consensus 359 lY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~-----D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~N 433 (657)
.+ ..++-|.=|.+|-|+-+=+. .+.+-+-|..||++++.|.++|+-+|+
T Consensus 92 ~~------------~~l~~sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla-------------- 145 (264)
T PRK08227 92 SN------------EAVAVDMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMA-------------- 145 (264)
T ss_pred Cc------------ccceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEE--------------
Confidence 11 22333444455555422110 233455677899999999999999993
Q ss_pred HHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhhcccceeee
Q 006203 434 MQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLCY 482 (657)
Q Consensus 434 v~lqk~lC~~APfYvLGPLvTDIApGYDHITsAIGaA~aa~~GadfLCY 482 (657)
.|.-|+-+.| ..|-|.-|.. +++-.|||++--
T Consensus 146 ------------~~prG~~~~~---~~~~ia~aaR--iaaELGADiVK~ 177 (264)
T PRK08227 146 ------------VTAVGKDMVR---DARYFSLATR--IAAEMGAQIIKT 177 (264)
T ss_pred ------------EecCCCCcCc---hHHHHHHHHH--HHHHHcCCEEec
Confidence 3455766555 6665555544 678899999863
No 32
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=80.43 E-value=73 Score=34.74 Aligned_cols=95 Identities=17% Similarity=0.263 Sum_probs=54.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhH---HHHHHHHhH
Q 006203 296 NLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHW---DEILDICNQ 372 (657)
Q Consensus 296 ~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~F---D~ileI~k~ 372 (657)
-++.+++.+.+..-.+.|+++..||+=+--..... ..+.+-+ .++++++++
T Consensus 146 Gi~~~~~~~~l~~~~~~~l~~~Gih~HiGS~~~~~--------------------------~~~~~a~~~~~~~~~~~~~ 199 (394)
T cd06831 146 GTTLKNCRHLLECAKELDVQIVGVKFHVSSSCKEY--------------------------QTYVHALSDARCVFDMAEE 199 (394)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEEEEECCCCCCCH--------------------------HHHHHHHHHHHHHHHHHHH
Confidence 45667777777666677999999998543222111 1112222 456777777
Q ss_pred hce---eEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHH--hcCCeEEeeCCC
Q 006203 373 YDV---ALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAW--DKDVQVMNEGPG 423 (657)
Q Consensus 373 YDV---tlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~--e~gVQVMIEGPG 423 (657)
++. .|.+|-|+- + +..|-.++.+.+ .++.++-. ..++++++| ||
T Consensus 200 ~g~~l~~ldiGGGf~-~---~~~~~~~~~~~i--~~~l~~~~~~~~~~~li~E-PG 248 (394)
T cd06831 200 FGFKMNMLDIGGGFT-G---SEIQLEEVNHVI--RPLLDVYFPEGSGIQIIAE-PG 248 (394)
T ss_pred CCCCCCEEEeCCCcC-C---CCCCHHHHHHHH--HHHHHHhcCcCCCCEEEEe-CC
Confidence 754 589999993 3 224544444332 23333322 136888887 55
No 33
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=80.23 E-value=12 Score=37.91 Aligned_cols=85 Identities=20% Similarity=0.198 Sum_probs=49.4
Q ss_pred eccccCCCCCChHHHHHHHHHHHHhCCCEe-eecCCC-----C----C---hHHHHHHHHhcCCCccccchhhhHHHHhc
Q 006203 225 ANIGNSAVASSIEEEVYKVQWATMWGADTV-MDLSTG-----R----H---IHETREWILRNSAVPVGTVPIYQALEKVD 291 (657)
Q Consensus 225 ANIGtS~~~~~ie~EveKl~~A~~~GADtv-MDLSTG-----g----d---i~~~R~~Il~nspvPVGTVPIYqA~~k~~ 291 (657)
+||+.+ +.++=++=++.+.++|+|.| +++|+- . + +.++-+++-+...+||. .|..
T Consensus 103 ~si~g~----~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~--------vKl~ 170 (289)
T cd02810 103 ASVGGS----SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLL--------VKLS 170 (289)
T ss_pred EEeccC----CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEE--------EEeC
Confidence 466544 33433444666677899977 455532 1 1 22333344444333332 1221
Q ss_pred CccCCCCHHHHHHHHHHHHhcCCCEEEEecccc
Q 006203 292 GIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVL 324 (657)
Q Consensus 292 g~~~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~ 324 (657)
-.++.|++.+.++.-.+.||||+++|.++.
T Consensus 171 ---~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~ 200 (289)
T cd02810 171 ---PYFDLEDIVELAKAAERAGADGLTAINTIS 200 (289)
T ss_pred ---CCCCHHHHHHHHHHHHHcCCCEEEEEcccC
Confidence 135677888888877788999999998754
No 34
>PRK09989 hypothetical protein; Provisional
Probab=80.16 E-value=9.1 Score=38.08 Aligned_cols=77 Identities=14% Similarity=0.169 Sum_probs=51.2
Q ss_pred hhhHHHHHHHHhHhcee-EeccCCCCCCCccCCCcHHHHH--HHHHHHHHHHHHHhcCCeEEeeC--CC---CCCCCchH
Q 006203 360 YEHWDEILDICNQYDVA-LSIGDGLRPGSIYDANDTAQFA--ELLTQGELTRRAWDKDVQVMNEG--PG---HIPMHKIP 431 (657)
Q Consensus 360 Y~~FD~ileI~k~YDVt-lSLGDGLRPG~i~DA~D~AQ~~--EL~~LGEL~krA~e~gVQVMIEG--PG---HVPl~~I~ 431 (657)
-+.+++.+++|++.++. +.+.-|..| +..+..+.. =...|.+|+++|.+.||++.+|+ ++ |.-++...
T Consensus 84 ~~~l~~~i~~A~~lg~~~v~v~~g~~~----~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~l~~~~~~~~~~~~~~ 159 (258)
T PRK09989 84 RADIDLALEYALALNCEQVHVMAGVVP----AGEDAERYRAVFIDNLRYAADRFAPHGKRILVEALSPGVKPHYLFSSQY 159 (258)
T ss_pred HHHHHHHHHHHHHhCcCEEEECccCCC----CCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCCCCccCCHH
Confidence 46789999999999984 444444444 233322222 24678999999999999999998 22 34466555
Q ss_pred HHHHHHHHh
Q 006203 432 ENMQKQLEW 440 (657)
Q Consensus 432 ~Nv~lqk~l 440 (657)
.-.++.+++
T Consensus 160 ~~~~ll~~v 168 (258)
T PRK09989 160 QALAIVEEV 168 (258)
T ss_pred HHHHHHHHc
Confidence 555555553
No 35
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=79.92 E-value=30 Score=33.35 Aligned_cols=118 Identities=11% Similarity=0.051 Sum_probs=66.1
Q ss_pred HHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCC
Q 006203 305 TLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLR 384 (657)
Q Consensus 305 ~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSLGDGLR 384 (657)
.+++-++.|.||+++|+-... .+-.++++.+++|++-+-++ -+-
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~-----------------------------------~~~~~~i~~~~~~g~~~~~~-~~~ 111 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADD-----------------------------------ATIKGAVKAAKKHGKEVQVD-LIN 111 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCH-----------------------------------HHHHHHHHHHHHcCCEEEEE-ecC
Confidence 355558889999999985211 34467899999998877651 011
Q ss_pred CCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCC--CC-chHHHHHHHHHhcCCCCccccCccccccCCCch
Q 006203 385 PGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIP--MH-KIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYD 461 (657)
Q Consensus 385 PG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVP--l~-~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGYD 461 (657)
| .+ .-+.++.|.+.|+..+-=.||.-- .. .--..++.-++....- ++.-|=+-..|
T Consensus 112 ~-----~t----------~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~~~~------~i~v~GGI~~~ 170 (206)
T TIGR03128 112 V-----KD----------KVKRAKELKELGADYIGVHTGLDEQAKGQNPFEDLQTILKLVKEA------RVAVAGGINLD 170 (206)
T ss_pred C-----CC----------hHHHHHHHHHcCCCEEEEcCCcCcccCCCCCHHHHHHHHHhcCCC------cEEEECCcCHH
Confidence 1 11 234456667788887766676521 11 0111233333333332 22223333556
Q ss_pred hHHHhHHHHHhhhcccceeeecCc
Q 006203 462 HITSAIGAANIGALGTALLCYVTP 485 (657)
Q Consensus 462 HITsAIGaA~aa~~GadfLCYVTP 485 (657)
++... ..+|++.+|..+-
T Consensus 171 n~~~~------~~~Ga~~v~vGsa 188 (206)
T TIGR03128 171 TIPDV------IKLGPDIVIVGGA 188 (206)
T ss_pred HHHHH------HHcCCCEEEEeeh
Confidence 66533 3578998887653
No 36
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=79.81 E-value=8.8 Score=39.53 Aligned_cols=182 Identities=14% Similarity=0.121 Sum_probs=93.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccc---ccc--ccCcccCccc--------------cccHHHHHHHHHcCC
Q 006203 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRY---IPL--TAKRMTGIVS--------------RGGSIHAKWCLAYHK 355 (657)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~---v~~--~~~RvtgIVS--------------RGGSi~a~Wml~h~~ 355 (657)
..++.+...+..++|.++|.|++=|=+--++.. +.. ...|+..+|. .-=..+ .=.+.++.
T Consensus 18 ~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~~~~vi-~~al~~G~ 96 (257)
T TIGR01496 18 RFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDTYRAEVA-RAALEAGA 96 (257)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCCHHHH-HHHHHcCC
Confidence 347889999999999999999999932111110 000 0012222221 111111 12222222
Q ss_pred c--Cch-hhhHHHHHHHHhHhceeEeccC--CCCCCCccCCCc-HHHHHH-HHHHHHHHHHHHhcCC---eEEeeCCCCC
Q 006203 356 E--NFA-YEHWDEILDICNQYDVALSIGD--GLRPGSIYDAND-TAQFAE-LLTQGELTRRAWDKDV---QVMNEGPGHI 425 (657)
Q Consensus 356 E--Npl-Y~~FD~ileI~k~YDVtlSLGD--GLRPG~i~DA~D-~AQ~~E-L~~LGEL~krA~e~gV---QVMIEGPGHV 425 (657)
. |-. +..++++++++++|++.+=+-. | .|....+..+ ..-+.| +..+-+++++|.++|| ++++. ||.-
T Consensus 97 ~iINsis~~~~~~~~~l~~~~~~~vV~m~~~g-~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~iilD-Pg~g 174 (257)
T TIGR01496 97 DIINDVSGGQDPAMLEVAAEYGVPLVLMHMRG-TPRTMQENPHYEDVVEEVLRFLEARAEELVAAGVAAERIILD-PGIG 174 (257)
T ss_pred CEEEECCCCCCchhHHHHHHcCCcEEEEeCCC-CCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEE-CCCC
Confidence 1 110 1127899999999987766632 3 3444322111 111222 3446788899999999 55555 5776
Q ss_pred CCCchHHHHHHHHHhc----CCCCccccCc-------cccccCCCchhHHHhHHHHHhhhccccee
Q 006203 426 PMHKIPENMQKQLEWC----NEAPFYTLGP-------LTTDIAPGYDHITSAIGAANIGALGTALL 480 (657)
Q Consensus 426 Pl~~I~~Nv~lqk~lC----~~APfYvLGP-------LvTDIApGYDHITsAIGaA~aa~~GadfL 480 (657)
+...++.|+++-+.+- -+.|.. +|. -+|+-.+.=-...++.-.+++...|+++|
T Consensus 175 f~ks~~~~~~~l~~i~~l~~~~~p~l-~G~SrkSfig~v~~~~~~~r~~~t~~~~~~a~~~Ga~ii 239 (257)
T TIGR01496 175 FGKTPEHNLELLKHLEEFVALGYPLL-VGASRKSFIGALLGTPPEERLEGTLAASAYAVQKGADIV 239 (257)
T ss_pred cccCHHHHHHHHHHHHHHHhCCCcEE-EEecccHHHHhhcCCChhhhhHHHHHHHHHHHHcCCCEE
Confidence 7777776665544321 234432 121 12222222233444444555666677655
No 37
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=79.63 E-value=7.9 Score=39.91 Aligned_cols=182 Identities=15% Similarity=0.103 Sum_probs=95.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEec-----cccccccccccCcccCc-----------cc---cccHHHHHHHHHcCC
Q 006203 295 ENLSWEVFRDTLIEQAEQGVDYFTIHA-----GVLLRYIPLTAKRMTGI-----------VS---RGGSIHAKWCLAYHK 355 (657)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDf~TIHa-----Gv~~~~v~~~~~RvtgI-----------VS---RGGSi~a~Wml~h~~ 355 (657)
..++++..++..++|.++|.|++=|=+ |...-..+..-.|+..+ || .==. .+.=++.++.
T Consensus 19 ~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~~~~-v~e~al~~G~ 97 (257)
T cd00739 19 RFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLISVDTFRAE-VARAALEAGA 97 (257)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCCCHH-HHHHHHHhCC
Confidence 448899999999999999999999943 32210000011222211 11 1111 1222333321
Q ss_pred c--Cc-hhhhH-HHHHHHHhHhceeEeccC--CCCCCCccCCCc-HHHHHHH-HHHHHHHHHHHhcCC---eEEeeCCCC
Q 006203 356 E--NF-AYEHW-DEILDICNQYDVALSIGD--GLRPGSIYDAND-TAQFAEL-LTQGELTRRAWDKDV---QVMNEGPGH 424 (657)
Q Consensus 356 E--Np-lY~~F-D~ileI~k~YDVtlSLGD--GLRPG~i~DA~D-~AQ~~EL-~~LGEL~krA~e~gV---QVMIEGPGH 424 (657)
. |- -...+ +++++++++|++.+=+=. | .|....+-.+ ..-+.|+ ..+-++.++|.++|| ++++ =||+
T Consensus 98 ~iINdisg~~~~~~~~~l~~~~~~~vV~m~~~g-~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~Ii~-DPg~ 175 (257)
T cd00739 98 DIINDVSGGSDDPAMLEVAAEYGAPLVLMHMRG-TPKTMQENPYYEDVVDEVLSFLEARLEAAESAGVARNRIIL-DPGI 175 (257)
T ss_pred CEEEeCCCCCCChHHHHHHHHcCCCEEEECCCC-CCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEE-ecCC
Confidence 1 10 01122 899999999987776633 3 3433211000 0012333 557788999999999 5555 4677
Q ss_pred CCCCchHHHHHHHHHh---c-CCCCccccCc-------cccccCCCchhHHHhHHHHHhhhccccee
Q 006203 425 IPMHKIPENMQKQLEW---C-NEAPFYTLGP-------LTTDIAPGYDHITSAIGAANIGALGTALL 480 (657)
Q Consensus 425 VPl~~I~~Nv~lqk~l---C-~~APfYvLGP-------LvTDIApGYDHITsAIGaA~aa~~GadfL 480 (657)
-....-+.|+++-+.+ . -+.|. ++|. -+|+--+.=-+..++.=.+++...||++|
T Consensus 176 gf~ks~~~~~~~l~~i~~l~~~~~pi-l~G~SrkSfig~~~~~~~~~r~~~t~~~~~~~~~~Ga~ii 241 (257)
T cd00739 176 GFGKTPEHNLELLRRLDELKQLGLPV-LVGASRKSFIGALLGREPKDRDWGTLALSALAAANGADIV 241 (257)
T ss_pred CcccCHHHHHHHHHHHHHHHhCCCcE-EEEecccHHHHHhcCCCccccchhHHHHHHHHHHcCCCEE
Confidence 6655544444433322 1 26786 3444 23333333233334444556777888876
No 38
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=78.97 E-value=2.9 Score=46.68 Aligned_cols=279 Identities=19% Similarity=0.200 Sum_probs=148.2
Q ss_pred ChHHHHHHHHHHHHhCCCEeeecCCCC----ChHHHHHHHHhcC----CCccccchhhhHHHHhcCccCCCCHHHHHHHH
Q 006203 235 SIEEEVYKVQWATMWGADTVMDLSTGR----HIHETREWILRNS----AVPVGTVPIYQALEKVDGIAENLSWEVFRDTL 306 (657)
Q Consensus 235 ~ie~EveKl~~A~~~GADtvMDLSTGg----di~~~R~~Il~ns----pvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~i 306 (657)
.+++.++-++.-.+.|...|.=|..-- +-.+-=+..|+.+ +=..+-+|| ..-.++.+++.+
T Consensus 26 ~~~e~~~~l~~l~~~g~~dvl~ltiDsytr~~~~~~a~~~l~~~~~~~~~~lnG~P~-----------v~~g~~~~R~l~ 94 (428)
T cd00245 26 LLEEHIELLRTLQEEGAADVLPLTIDSYTRVNDYEEAEEGLEESIKAGKSLLNGFPI-----------VNHGVKTCRKLL 94 (428)
T ss_pred CHHHHHHHHHHHHhcCCCCeeccccccchhhhhhHHHHHHHHhhhhcCccccCCCCc-----------ccccHHHHHHHH
Confidence 567777777776777755555333322 2222223444443 223444444 333445555555
Q ss_pred HHHHhcCCCEEE-EeccccccccccccC-cccCcccc-ccHHHHHHHHHcCCcCchh---hhH---HHHHHHHhHhceeE
Q 006203 307 IEQAEQGVDYFT-IHAGVLLRYIPLTAK-RMTGIVSR-GGSIHAKWCLAYHKENFAY---EHW---DEILDICNQYDVAL 377 (657)
Q Consensus 307 eeQAeqGVDf~T-IHaGv~~~~v~~~~~-RvtgIVSR-GGSi~a~Wml~h~~ENplY---~~F---D~ileI~k~YDVtl 377 (657)
+ +|||=- +-|| +.+...+.+- =-+|+-|- ||-| .||+-..+-=||= .+| |+||..-.+.+|.+
T Consensus 95 ~-----~~~~PlqvRhG-t~d~~~l~e~~~a~g~~a~egg~i--sy~~py~k~~~Le~si~~wqy~~rl~~~y~e~gv~i 166 (428)
T cd00245 95 E-----GVDFPVQVRHG-TPDARLLAEIAIASGFDATEGGPI--SYNLPYSKNVPLEKSIENWQYCDRLVGFYEENGVPI 166 (428)
T ss_pred H-----hCCCCEeeccC-CccHHHHHHHHHHhCcccccccce--eeccccCCCCCHHHHHHHHHHHHHHHHHHHhcCcee
Confidence 4 345533 4444 3332222111 11233332 2222 3666665544553 355 77777777777776
Q ss_pred eccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCC-CCCC-CchHHHHHHHHHhcCC------------
Q 006203 378 SIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPG-HIPM-HKIPENMQKQLEWCNE------------ 443 (657)
Q Consensus 378 SLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPG-HVPl-~~I~~Nv~lqk~lC~~------------ 443 (657)
- =+-+=|-.--+.-+.-.++ +-.|-.| .|++.||.-+.=+=+ |.-+ .+|. -++--++++..
T Consensus 167 n-~E~fg~l~~~l~pptla~a-iaylea~--la~glgV~~lS~~f~~~~n~~qDIA-k~RA~RrL~a~~l~efG~~d~~~ 241 (428)
T cd00245 167 N-REPFGPLTGTLVPPSILIA-IQILEAL--LAAEQGVKSISVGYAQQGNLTQDIA-ALRALRELAKEYLPKYGYKDVDI 241 (428)
T ss_pred c-ccCCcCcccCcCCcHHHHH-HHHHHHH--HHccCCCCEEEEEeecCCCHHHHHH-HHHHHHHHHHHHHHHcCCCCeEE
Confidence 4 2333332212222221111 1111122 456677766544322 2222 2222 12222222211
Q ss_pred -CCcc-ccCccccccCCCchhHHHhHHHHHhhhcccceeeecCchhhcCCCChhHHHHHHH-HHHHHHhHhhhhcCC-cc
Q 006203 444 -APFY-TLGPLTTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKAGVI-AYKIAAHAADLAKGH-PL 519 (657)
Q Consensus 444 -APfY-vLGPLvTDIApGYDHITsAIGaA~aa~~GadfLCYVTPaEHLgLP~~eDVkeGVi-A~kIAAHaaDlaKg~-p~ 519 (657)
--|+ -+|..+.|-.-.|-+|+. ++..|+..||+.|=-.|+.|=+++|+.++++.++- +-+|.+|-.++..-. +.
T Consensus 242 ~~~fht~~ggfplt~qqa~~nI~r--~a~aAvLgGaqslhvkt~dEA~giPT~ea~~~ALr~Tqqii~~e~g~~~~~s~~ 319 (428)
T cd00245 242 HTVFHQWMGGFPRDESGAFGLIGY--AATIAALSGATKVIVKTPDEAHGIPTIEANVAGLKATATVLNMLRGQKFPPSEA 319 (428)
T ss_pred EEEEEeccCCCCcchHHHHHHHHH--HHHHHHHcCCCEEEeCChhhhccCCCHHHHHHHHHHHHHHHHHhcCCCccccHH
Confidence 1122 267888888888999999 88888899999999999999999999999999999 888888876654221 11
Q ss_pred h-hhHHHHHHHHHhhcChHHH
Q 006203 520 A-QTWDDALSKARFEFRWMDQ 539 (657)
Q Consensus 520 A-~~rD~~mSkAR~~~dWe~Q 539 (657)
. .+-|.-..+|+.-++.-..
T Consensus 320 VE~~t~~ie~Ea~~ild~I~e 340 (428)
T cd00245 320 IEQEEEIIKAEVKAILDKVFE 340 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 1 2334555666666654433
No 39
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=78.57 E-value=28 Score=36.19 Aligned_cols=126 Identities=21% Similarity=0.234 Sum_probs=75.4
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCEEEEeccccccc-ccc-------ccCc---ccCccccccHHHHHHHHHc-CC-----c
Q 006203 294 AENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRY-IPL-------TAKR---MTGIVSRGGSIHAKWCLAY-HK-----E 356 (657)
Q Consensus 294 ~~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~-v~~-------~~~R---vtgIVSRGGSi~a~Wml~h-~~-----E 356 (657)
+.+-+++.+.+..++|.++|.|++-|=+++..+. .++ ...+ ..-|=|.=-..+.+=+.+. ++ =
T Consensus 19 ~~~~d~~~i~~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~~~plsIDT~~~~v~eaaL~~~~G~~iINsI 98 (261)
T PRK07535 19 IEAKDAAFIQKLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEVVDVPLCIDSPNPAAIEAGLKVAKGPPLINSV 98 (261)
T ss_pred HHcCCHHHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhCCCCEEEeCCCHHHHHHHHHhCCCCCEEEeC
Confidence 4566889999999999999999999999975322 111 1011 1111122233333333321 11 1
Q ss_pred CchhhhHHHHHHHHhHhceeEec--cC--CCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCC--eEEeeCCCCCCCC
Q 006203 357 NFAYEHWDEILDICNQYDVALSI--GD--GLRPGSIYDANDTAQFAELLTQGELTRRAWDKDV--QVMNEGPGHIPMH 428 (657)
Q Consensus 357 NplY~~FD~ileI~k~YDVtlSL--GD--GLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gV--QVMIEGPGHVPl~ 428 (657)
|-.-+.++++++++++|++.+-+ -| | -|. ++.+ -+..+-+++++|.++|| .=+|=-||--|+.
T Consensus 99 s~~~~~~~~~~~l~~~~g~~vv~m~~~~~g-~P~---t~~~-----~~~~l~~~v~~a~~~GI~~~~IilDPgi~~~~ 167 (261)
T PRK07535 99 SAEGEKLEVVLPLVKKYNAPVVALTMDDTG-IPK---DAED-----RLAVAKELVEKADEYGIPPEDIYIDPLVLPLS 167 (261)
T ss_pred CCCCccCHHHHHHHHHhCCCEEEEecCCCC-CCC---CHHH-----HHHHHHHHHHHHHHcCCCHhHEEEeCCCCccc
Confidence 11114588999999999876663 32 2 132 1111 15667888999999999 2444468877753
No 40
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=77.55 E-value=1e+02 Score=32.78 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=20.3
Q ss_pred CChHHHHHHHHHHHHhCCCEeeecC
Q 006203 234 SSIEEEVYKVQWATMWGADTVMDLS 258 (657)
Q Consensus 234 ~~ie~EveKl~~A~~~GADtvMDLS 258 (657)
.+++.=++++..-++.||| |.|+-
T Consensus 35 ~~~~~a~~~a~~~~~~GAd-IIDIG 58 (282)
T PRK11613 35 NSLIDAVKHANLMINAGAT-IIDVG 58 (282)
T ss_pred CCHHHHHHHHHHHHHCCCc-EEEEC
Confidence 4789999999999999998 55874
No 41
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=77.36 E-value=24 Score=37.53 Aligned_cols=136 Identities=21% Similarity=0.244 Sum_probs=70.0
Q ss_pred EeeccccCCCCCChHHHHHHHHHHHHhCCCEeeecC-------CCC--ChH---HHHHHHHhcCCCccccchhhhHHHHh
Q 006203 223 VNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLS-------TGR--HIH---ETREWILRNSAVPVGTVPIYQALEKV 290 (657)
Q Consensus 223 VNANIGtS~~~~~ie~EveKl~~A~~~GADtvMDLS-------TGg--di~---~~R~~Il~nspvPVGTVPIYqA~~k~ 290 (657)
+.+|+|.........+++.++..-+++.|..| .|. ..+ +++ ++=++|.+..++||. +..+
T Consensus 116 ~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i-~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~~vPVi-------vK~~ 187 (333)
T TIGR02151 116 LIANIGAPQLVEGGPEEAQEAIDMIEADALAI-HLNVLQELVQPEGDRNFKGWLEKIAEICSQLSVPVI-------VKEV 187 (333)
T ss_pred EEeecCchhhccccHHHHHHHHHHhcCCCEEE-cCcccccccCCCCCcCHHHHHHHHHHHHHhcCCCEE-------EEec
Confidence 45677754443322556666655555444443 442 112 454 455667777778876 1111
Q ss_pred cCccCCCCHHHHHHHHHHHHhcCCCEEEEeccc--cccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHH
Q 006203 291 DGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGV--LLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILD 368 (657)
Q Consensus 291 ~g~~~~lt~e~~~d~ieeQAeqGVDf~TIHaGv--~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ile 368 (657)
| ..++ .+....-.+.|||+++||.+- +...++. -|..... + |++...|-.. -.+.|.+
T Consensus 188 -g--~g~~----~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~--~r~~~~~-~-~~~~~~~g~~---------t~~~l~~ 247 (333)
T TIGR02151 188 -G--FGIS----KEVAKLLADAGVSAIDVAGAGGTSWAQVEN--YRAKGSN-L-ASFFNDWGIP---------TAASLLE 247 (333)
T ss_pred -C--CCCC----HHHHHHHHHcCCCEEEECCCCCCcccchhh--hcccccc-c-chhhhcccHh---------HHHHHHH
Confidence 2 1233 344555567899999998632 1112221 1211110 0 5565555432 3466777
Q ss_pred HHh-HhceeEeccCCCCCC
Q 006203 369 ICN-QYDVALSIGDGLRPG 386 (657)
Q Consensus 369 I~k-~YDVtlSLGDGLRPG 386 (657)
+.+ ..++.+-.--|+|-|
T Consensus 248 ~~~~~~~ipVIasGGI~~~ 266 (333)
T TIGR02151 248 VRSDAPDAPIIASGGLRTG 266 (333)
T ss_pred HHhcCCCCeEEEECCCCCH
Confidence 765 346666666666544
No 42
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=77.34 E-value=50 Score=36.86 Aligned_cols=80 Identities=19% Similarity=0.220 Sum_probs=47.0
Q ss_pred eEeeccccCCCCCChHHHHHHHHHHHHhCCCEee-ecCCCC--ChHHHHHHHHhcC---CCccccchhhhHHHHhcCccC
Q 006203 222 KVNANIGNSAVASSIEEEVYKVQWATMWGADTVM-DLSTGR--HIHETREWILRNS---AVPVGTVPIYQALEKVDGIAE 295 (657)
Q Consensus 222 KVNANIGtS~~~~~ie~EveKl~~A~~~GADtvM-DLSTGg--di~~~R~~Il~ns---pvPVGTVPIYqA~~k~~g~~~ 295 (657)
-|-|.+|++. +-++.+...+++|+|-|- |.+-|. .+.++=++|-+.. +|-+|-|--++....+
T Consensus 143 ~v~aavg~~~------~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l----- 211 (404)
T PRK06843 143 RVGAAVSIDI------DTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDL----- 211 (404)
T ss_pred EEEEEEeCCH------HHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHH-----
Confidence 3555666532 245667777789999985 777663 3334444554433 2445666655554433
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecccccccc
Q 006203 296 NLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYI 328 (657)
Q Consensus 296 ~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v 328 (657)
.+.|+|++-+ |++...+
T Consensus 212 --------------~~aGaD~I~v--G~g~Gs~ 228 (404)
T PRK06843 212 --------------ISVGADCLKV--GIGPGSI 228 (404)
T ss_pred --------------HHcCCCEEEE--CCCCCcC
Confidence 4579999874 6655433
No 43
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=76.35 E-value=53 Score=33.87 Aligned_cols=181 Identities=15% Similarity=0.126 Sum_probs=99.1
Q ss_pred ceeEeeccccCCCCCChHHHHHHHHHHHHhCCCE----eeecCCCCChH---HHHHHHHhcCCCccccchhhhHHHHhcC
Q 006203 220 LVKVNANIGNSAVASSIEEEVYKVQWATMWGADT----VMDLSTGRHIH---ETREWILRNSAVPVGTVPIYQALEKVDG 292 (657)
Q Consensus 220 ~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADt----vMDLSTGgdi~---~~R~~Il~nspvPVGTVPIYqA~~k~~g 292 (657)
++||-.+| -|++...+++|++++.. |+|. |||=.--.||. .+=++|-+.+.+|+ + ++=
T Consensus 2 ~~~I~pSi-l~ad~~~l~~el~~l~~----g~d~lH~DiMDG~FVPN~tfg~~~i~~ir~~t~~~~------D----vHL 66 (229)
T PRK09722 2 RMKISPSL-MCMDLLKFKEQIEFLNS----KADYFHIDIMDGHFVPNLTLSPFFVSQVKKLASKPL------D----VHL 66 (229)
T ss_pred CceEEeeh-hhcCHHHHHHHHHHHHh----CCCEEEEecccCccCCCcccCHHHHHHHHhcCCCCe------E----EEE
Confidence 45677777 56777889999988743 8998 68833322221 12222323333331 1 000
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCCEEEEecccccccccc------ccCcccCccccccHHHHHHHHHcCCcCchhhhHHHH
Q 006203 293 IAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPL------TAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEI 366 (657)
Q Consensus 293 ~~~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~------~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~i 366 (657)
-+ -+++. .|++-++.|+|++|||+--+..++.+ ..+--.||+ =||- |.++.|
T Consensus 67 Mv--~~P~~---~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGla----------------lnP~-T~~~~l 124 (229)
T PRK09722 67 MV--TDPQD---YIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLV----------------LNPE-TPVESI 124 (229)
T ss_pred Ee--cCHHH---HHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEE----------------eCCC-CCHHHH
Confidence 00 12444 45555777999999999743222221 112222332 2674 888999
Q ss_pred HHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcC--CeEEeeCCCCCCCCchHHHHHHHHHhcCCC
Q 006203 367 LDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKD--VQVMNEGPGHIPMHKIPENMQKQLEWCNEA 444 (657)
Q Consensus 367 leI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~g--VQVMIEGPGHVPl~~I~~Nv~lqk~lC~~A 444 (657)
.+++..-|..|=+. .-||--.=.-....+.-+..|-++. .++| +.+.|-| =|- .+|+..-.+ .||
T Consensus 125 ~~~l~~vD~VLvMs--V~PGf~GQ~fi~~~l~KI~~lr~~~---~~~~~~~~IeVDG--GI~----~~~i~~~~~--aGa 191 (229)
T PRK09722 125 KYYIHLLDKITVMT--VDPGFAGQPFIPEMLDKIAELKALR---ERNGLEYLIEVDG--SCN----QKTYEKLME--AGA 191 (229)
T ss_pred HHHHHhcCEEEEEE--EcCCCcchhccHHHHHHHHHHHHHH---HhcCCCeEEEEEC--CCC----HHHHHHHHH--cCC
Confidence 99999999777653 3466554444444444343333333 3455 5566665 232 345554333 457
Q ss_pred CccccC
Q 006203 445 PFYTLG 450 (657)
Q Consensus 445 PfYvLG 450 (657)
=.+|+|
T Consensus 192 d~~V~G 197 (229)
T PRK09722 192 DVFIVG 197 (229)
T ss_pred CEEEEC
Confidence 888888
No 44
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=76.01 E-value=42 Score=35.29 Aligned_cols=115 Identities=11% Similarity=0.095 Sum_probs=79.0
Q ss_pred HHHHHhCCCEeeecCC-CCChHHHHHHHH--hcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEe
Q 006203 244 QWATMWGADTVMDLST-GRHIHETREWIL--RNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIH 320 (657)
Q Consensus 244 ~~A~~~GADtvMDLST-Ggdi~~~R~~Il--~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGVDf~TIH 320 (657)
..-.++|..+|..|.. .-|..++.+.=| ..-|+|-|++|--+.+ +.|++.|+++.++|= -+.||
T Consensus 110 ~eLk~~gV~~lVrlcE~~Yd~~~~~~~GI~~~~lpipDg~aPs~~~i------------~~~l~~i~~~l~~g~-~VaVH 176 (241)
T PTZ00393 110 KEMKNYNVTDLVRTCERTYNDGEITSAGINVHELIFPDGDAPTVDIV------------SNWLTIVNNVIKNNR-AVAVH 176 (241)
T ss_pred HHHHHcCCCEEEECCCCCCCHHHHHHcCCeEEEeecCCCCCCCHHHH------------HHHHHHHHHHHhcCC-eEEEE
Confidence 3345789999998854 224455554434 3457888888864433 456666766666674 58899
Q ss_pred ccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHH
Q 006203 321 AGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAEL 400 (657)
Q Consensus 321 aGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL 400 (657)
|- +| +.|-|.+++.|++.++- .+++.++..|+ .|||+| + ..|++=|
T Consensus 177 C~---------AG-----lGRTGtl~AayLI~~Gm------speeAI~~VR~----------~RPgAI---n-~~Q~~fL 222 (241)
T PTZ00393 177 CV---------AG-----LGRAPVLASIVLIEFGM------DPIDAIVFIRD----------RRKGAI---N-KRQLQFL 222 (241)
T ss_pred CC---------CC-----CCHHHHHHHHHHHHcCC------CHHHHHHHHHH----------HCCCCC---C-HHHHHHH
Confidence 92 33 47899999999997542 57888888886 699998 3 4687766
Q ss_pred HHHHH
Q 006203 401 LTQGE 405 (657)
Q Consensus 401 ~~LGE 405 (657)
....+
T Consensus 223 ~~y~~ 227 (241)
T PTZ00393 223 KAYKK 227 (241)
T ss_pred HHHHH
Confidence 65544
No 45
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=75.50 E-value=5.8 Score=42.73 Aligned_cols=106 Identities=21% Similarity=0.185 Sum_probs=63.3
Q ss_pred HHHHHHHHhHhcee-EeccCCCCCCCccCCCcHHHHHHHHHHH----------HHHHHHHhcCCeEEe----eCCCCCC-
Q 006203 363 WDEILDICNQYDVA-LSIGDGLRPGSIYDANDTAQFAELLTQG----------ELTRRAWDKDVQVMN----EGPGHIP- 426 (657)
Q Consensus 363 FD~ileI~k~YDVt-lSLGDGLRPG~i~DA~D~AQ~~EL~~LG----------EL~krA~e~gVQVMI----EGPGHVP- 426 (657)
||+.++++.++.|. +|++ +-+|. |+.+|...| ++++++-+.||-+.| |.-||+.
T Consensus 71 ~~~~l~vi~e~~v~~V~~~-~G~P~---------~~~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~vVaqG~EAGGH~G~ 140 (320)
T cd04743 71 RAAQLAVVRAIKPTFALIA-GGRPD---------QARALEAIGISTYLHVPSPGLLKQFLENGARKFIFEGRECGGHVGP 140 (320)
T ss_pred hHHHHHHHHhcCCcEEEEc-CCChH---------HHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEEecCcCcCCCCC
Confidence 78899999999986 4555 33453 455665444 778999999998777 6679996
Q ss_pred ---CCchHHHHHHHHHhc-----CCCCccccCccccccCCCchh-HHHhHHH-------HHhhhcccceeee
Q 006203 427 ---MHKIPENMQKQLEWC-----NEAPFYTLGPLTTDIAPGYDH-ITSAIGA-------ANIGALGTALLCY 482 (657)
Q Consensus 427 ---l~~I~~Nv~lqk~lC-----~~APfYvLGPLvTDIApGYDH-ITsAIGa-------A~aa~~GadfLCY 482 (657)
+-.+++-++.-+... .+-|.+.-|= |+-|.+= -..+.|+ +...+.|+.|||-
T Consensus 141 ~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGG----I~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t 208 (320)
T cd04743 141 RSSFVLWESAIDALLAANGPDKAGKIHLLFAGG----IHDERSAAMVSALAAPLAERGAKVGVLMGTAYLFT 208 (320)
T ss_pred CCchhhHHHHHHHHHHhhcccccCCccEEEEcC----CCCHHHHHHHHHcCCcccccccccEEEEccHHhcc
Confidence 222332222211111 1356665554 3434331 1223333 2678899999874
No 46
>PRK09061 D-glutamate deacylase; Validated
Probab=75.40 E-value=78 Score=35.62 Aligned_cols=114 Identities=16% Similarity=0.060 Sum_probs=68.3
Q ss_pred CHHH---HHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhc
Q 006203 298 SWEV---FRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYD 374 (657)
Q Consensus 298 t~e~---~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YD 374 (657)
|.++ +.+.+++-.++|++.|..-. .+.+ .---.+++++++++++||
T Consensus 164 t~~el~~m~~ll~~al~~Ga~gis~~~----~y~p---------------------------~~~~~eL~~l~~~A~~~g 212 (509)
T PRK09061 164 TPAELAEILELLEQGLDEGALGIGIGA----GYAP---------------------------GTGHKEYLELARLAARAG 212 (509)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEecCC----ccCC---------------------------CCCHHHHHHHHHHHHHcC
Confidence 4454 66667777789999987621 1111 012346889999999999
Q ss_pred eeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCC------CchHHHHHHHHHhcCCCCccc
Q 006203 375 VALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPM------HKIPENMQKQLEWCNEAPFYT 448 (657)
Q Consensus 375 VtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl------~~I~~Nv~lqk~lC~~APfYv 448 (657)
..+.+ =+|-..+. ....|+..+-++.+.|++.|+.|-|= |+-- .+.-+-++.-++.+
T Consensus 213 ~~v~~--H~e~~~~~-----~~~~e~~av~~~i~lA~~~G~rv~Is---Hlss~g~~~~~~~le~I~~Ar~~G------- 275 (509)
T PRK09061 213 VPTYT--HVRYLSNV-----DPRSSVDAYQELIAAAAETGAHMHIC---HVNSTSLRDIDRCLALVEKAQAQG------- 275 (509)
T ss_pred CEEEE--EecCcccC-----CchhHHHHHHHHHHHHHHhCCCEEEE---eeccCCcccHHHHHHHHHHHHHcC-------
Confidence 88854 11111001 13568888888899999999887764 6544 33333444444421
Q ss_pred cCccccccCCCc
Q 006203 449 LGPLTTDIAPGY 460 (657)
Q Consensus 449 LGPLvTDIApGY 460 (657)
-++++|+.|.|
T Consensus 276 -i~Vt~e~~P~~ 286 (509)
T PRK09061 276 -LDVTTEAYPYG 286 (509)
T ss_pred -CcEEEEecCcc
Confidence 24556666655
No 47
>PRK09875 putative hydrolase; Provisional
Probab=75.17 E-value=1.1e+02 Score=32.63 Aligned_cols=88 Identities=17% Similarity=0.241 Sum_probs=59.6
Q ss_pred CChHHHHHHHHHHHHhCCCEeeecCC---CCChHHHHHHHHhcCCCccc-cchhhhHHHHhcCccCCCCHHHHHHHHHHH
Q 006203 234 SSIEEEVYKVQWATMWGADTVMDLST---GRHIHETREWILRNSAVPVG-TVPIYQALEKVDGIAENLSWEVFRDTLIEQ 309 (657)
Q Consensus 234 ~~ie~EveKl~~A~~~GADtvMDLST---Ggdi~~~R~~Il~nspvPVG-TVPIYqA~~k~~g~~~~lt~e~~~d~ieeQ 309 (657)
.+++.=++.++.-.++|-.||.|.++ |.|...+|+-- +.|.|.|= +-=.|..-- .-..+..++.|+|-+.+.+.
T Consensus 31 ~~~~~~~~el~~~~~~Gg~tiVd~T~~g~GRd~~~l~~is-~~tgv~Iv~~TG~y~~~~-~p~~~~~~~~e~la~~~i~e 108 (292)
T PRK09875 31 DQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVM-RETGINVVACTGYYQDAF-FPEHVATRSVQELAQEMVDE 108 (292)
T ss_pred ccHHHHHHHHHHHHHhCCCeEEecCCCccCcCHHHHHHHH-HHhCCcEEEcCcCCCCcc-CCHHHhcCCHHHHHHHHHHH
Confidence 45565566666677889999999886 67888887654 45666541 112222100 01234578899999999999
Q ss_pred HhcCCCEEEEeccc
Q 006203 310 AEQGVDYFTIHAGV 323 (657)
Q Consensus 310 AeqGVDf~TIHaGv 323 (657)
.++|+|---|-|||
T Consensus 109 i~~Gi~gt~ikaGv 122 (292)
T PRK09875 109 IEQGIDGTELKAGI 122 (292)
T ss_pred HHHhhccCCCcccE
Confidence 99999976676776
No 48
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=74.55 E-value=59 Score=34.58 Aligned_cols=137 Identities=22% Similarity=0.250 Sum_probs=69.7
Q ss_pred EeeccccCCCCCChHHHHHHHHHHHHhCCCEe-eecCC---------CCChH---HHHHHHHhcCCCccccchhhhHHHH
Q 006203 223 VNANIGNSAVASSIEEEVYKVQWATMWGADTV-MDLST---------GRHIH---ETREWILRNSAVPVGTVPIYQALEK 289 (657)
Q Consensus 223 VNANIGtS~~~~~ie~EveKl~~A~~~GADtv-MDLST---------Ggdi~---~~R~~Il~nspvPVGTVPIYqA~~k 289 (657)
+.+|+|.......-.+++.++...+ +||.+ ..|.. ..|.+ +.=++|+++.++||. .|
T Consensus 115 ~~~Nl~~~~~~~~~~~~~~~~i~~~--~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~~vPVi--------vK 184 (326)
T cd02811 115 LIANLGAVQLNGYGVEEARRAVEMI--EADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKALSVPVI--------VK 184 (326)
T ss_pred EEeecCccccCCCCHHHHHHHHHhc--CCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhcCCCEE--------EE
Confidence 4557765543222234444444434 55554 24422 22454 455677777788876 12
Q ss_pred hcCccCCCCHHHHHHHHHHHHhcCCCEEEEecc--ccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHH
Q 006203 290 VDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAG--VLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEIL 367 (657)
Q Consensus 290 ~~g~~~~lt~e~~~d~ieeQAeqGVDf~TIHaG--v~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~il 367 (657)
..| ..+|. +....-.+.|||++.++.. -+.-.++.. |-... -.| ......+.-+.-.+.|.
T Consensus 185 ~~g--~g~s~----~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~--r~~~~--------~~~-~~~~~~~~g~~t~~~l~ 247 (326)
T cd02811 185 EVG--FGISR----ETAKRLADAGVKAIDVAGAGGTSWARVENY--RAKDS--------DQR-LAEYFADWGIPTAASLL 247 (326)
T ss_pred ecC--CCCCH----HHHHHHHHcCCCEEEECCCCCCcccccccc--ccccc--------ccc-cccccccccccHHHHHH
Confidence 112 23554 4445556789999999752 222222211 11110 012 11111222334467888
Q ss_pred HHHhHh-ceeEeccCCCCCC
Q 006203 368 DICNQY-DVALSIGDGLRPG 386 (657)
Q Consensus 368 eI~k~Y-DVtlSLGDGLRPG 386 (657)
++.+.. ++.+-.-=|+|-|
T Consensus 248 ~~~~~~~~ipIiasGGIr~~ 267 (326)
T cd02811 248 EVRSALPDLPLIASGGIRNG 267 (326)
T ss_pred HHHHHcCCCcEEEECCCCCH
Confidence 888777 7888887777755
No 49
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=74.42 E-value=32 Score=37.05 Aligned_cols=168 Identities=20% Similarity=0.209 Sum_probs=86.3
Q ss_pred CCHHHHHHHHHcCC------------CHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeeccccCCCCCChHHH
Q 006203 172 ITEEMLYCATREKL------------DPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEE 239 (657)
Q Consensus 172 IT~EMe~VA~~E~i------------~pE~vR~~VA~Gr~VIPaN~nh~~~~p~~IG~~l~tKVNANIGtS~~~~~ie~E 239 (657)
|.+++..+|.+.|+ +|| +++.+..=|-.-| ..| +.+|||-......-.++
T Consensus 78 in~~La~~a~~~G~~~~~Gs~~~~~~~~~-~~~~~~~vr~~~p-------~~p----------~~aNl~~~~~~~~~~~~ 139 (352)
T PRK05437 78 INRKLAEAAEELGIAMGVGSQRAALKDPE-LADSFSVVRKVAP-------DGL----------LFANLGAVQLYGYGVEE 139 (352)
T ss_pred HHHHHHHHHHHcCCCeEecccHhhccChh-hHHHHHHHHHHCC-------Cce----------EEeecCccccCCCCHHH
Confidence 45777888888872 566 5555443221111 112 44577765543222344
Q ss_pred HHHHHHHHHhCCCEe-eecCC-------CC--ChH---HHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHH
Q 006203 240 VYKVQWATMWGADTV-MDLST-------GR--HIH---ETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTL 306 (657)
Q Consensus 240 veKl~~A~~~GADtv-MDLST-------Gg--di~---~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~i 306 (657)
+.++...+ +||.+ ..|.. ++ |.+ +.=++|.+..++||. + |..| ..++. +..
T Consensus 140 ~~~~~~~~--~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVi-------v-K~~g--~g~s~----~~a 203 (352)
T PRK05437 140 AQRAVEMI--EADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVI-------V-KEVG--FGISK----ETA 203 (352)
T ss_pred HHHHHHhc--CCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEE-------E-EeCC--CCCcH----HHH
Confidence 44443333 56655 34422 22 444 556677777778876 1 2112 23553 444
Q ss_pred HHHHhcCCCEEEEecc--ccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHh-ceeEeccCCC
Q 006203 307 IEQAEQGVDYFTIHAG--VLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQY-DVALSIGDGL 383 (657)
Q Consensus 307 eeQAeqGVDf~TIHaG--v~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~Y-DVtlSLGDGL 383 (657)
..-.+.|||+++|+.. .+.-.++. .|-..- .-. ....+.-+.-++.|.++.+.. ++.+-.-=|+
T Consensus 204 ~~l~~~Gvd~I~Vsg~GGt~~~~ie~--~R~~~~--~~~---------~~~~~~g~pt~~~l~~i~~~~~~ipvia~GGI 270 (352)
T PRK05437 204 KRLADAGVKAIDVAGAGGTSWAAIEN--YRARDD--RLA---------SYFADWGIPTAQSLLEARSLLPDLPIIASGGI 270 (352)
T ss_pred HHHHHcCCCEEEECCCCCCCccchhh--hhhhcc--ccc---------cccccccCCHHHHHHHHHHhcCCCeEEEECCC
Confidence 4445679999999763 11111221 111100 000 112233345677888888874 8888776677
Q ss_pred CCC
Q 006203 384 RPG 386 (657)
Q Consensus 384 RPG 386 (657)
|-|
T Consensus 271 ~~~ 273 (352)
T PRK05437 271 RNG 273 (352)
T ss_pred CCH
Confidence 765
No 50
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=74.26 E-value=56 Score=33.74 Aligned_cols=156 Identities=17% Similarity=0.209 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHH-HhCCCEeeecCCCCChHHHHHHHHhcCCCccc--cchhhhHHHHhcCccCCCCHHHHHHHHHH----
Q 006203 236 IEEEVYKVQWAT-MWGADTVMDLSTGRHIHETREWILRNSAVPVG--TVPIYQALEKVDGIAENLSWEVFRDTLIE---- 308 (657)
Q Consensus 236 ie~EveKl~~A~-~~GADtvMDLSTGgdi~~~R~~Il~nspvPVG--TVPIYqA~~k~~g~~~~lt~e~~~d~iee---- 308 (657)
--+.++|+..++ +.|+-.++-|.-+|-...... .. ..|++ .+|.+ .....+..||.+++-++|+.
T Consensus 75 ~~~~~~~~~~~vh~~g~~~~~Ql~h~G~~~~~~~--~~--~~~~~~s~~~~~----~~~~~~~~mt~~ei~~~i~~~~~a 146 (327)
T cd02803 75 QIPGLRKLTEAVHAHGAKIFAQLAHAGRQAQPNL--TG--GPPPAPSAIPSP----GGGEPPREMTKEEIEQIIEDFAAA 146 (327)
T ss_pred HHHHHHHHHHHHHhCCCHhhHHhhCCCcCCCCcC--CC--CCccCCCCCCCC----CCCCCCCcCCHHHHHHHHHHHHHH
Confidence 345566665554 457777777776653211000 00 01111 12211 11345678998888776653
Q ss_pred ---HHhcCCCEEEEecc---ccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHh-Hhce--eEec
Q 006203 309 ---QAEQGVDYFTIHAG---VLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICN-QYDV--ALSI 379 (657)
Q Consensus 309 ---QAeqGVDf~TIHaG---v~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k-~YDV--tlSL 379 (657)
-.+.|.|.+=||+| +..+.+.-..++-+. ..|||+.-.+ .++.+-.+.|-+.+- .+.| -+|.
T Consensus 147 A~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d--~yGgs~enr~-------r~~~eii~avr~~~g~d~~i~vris~ 217 (327)
T cd02803 147 ARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTD--EYGGSLENRA-------RFLLEIVAAVREAVGPDFPVGVRLSA 217 (327)
T ss_pred HHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCc--ccCCCHHHHH-------HHHHHHHHHHHHHcCCCceEEEEech
Confidence 34579999999997 333333322233343 5699975433 345565555555541 1223 2354
Q ss_pred cCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe
Q 006203 380 GDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN 419 (657)
Q Consensus 380 GDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMI 419 (657)
+|....| .+. ...-+|+++..+.|+..+.
T Consensus 218 ~~~~~~g-----~~~------~e~~~la~~l~~~G~d~i~ 246 (327)
T cd02803 218 DDFVPGG-----LTL------EEAIEIAKALEEAGVDALH 246 (327)
T ss_pred hccCCCC-----CCH------HHHHHHHHHHHHcCCCEEE
Confidence 4444222 222 2335666777788887664
No 51
>PRK13404 dihydropyrimidinase; Provisional
Probab=74.12 E-value=36 Score=37.74 Aligned_cols=92 Identities=16% Similarity=0.123 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeE
Q 006203 298 SWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVAL 377 (657)
Q Consensus 298 t~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtl 377 (657)
+.+.+++.+.++++.||+.|-+-.+ .+| + .+-.+.+.++++.+++|++.+
T Consensus 133 ~~~~~~~~v~~l~~~G~~~iKi~~~------------------~~~-----~-------~~~~~~l~~~~~~a~~~g~~V 182 (477)
T PRK13404 133 TEEVLTEELPALIAQGYTSFKVFMT------------------YDD-----L-------KLDDRQILDVLAVARRHGAMV 182 (477)
T ss_pred ChhhHHHHHHHHHHcCCCEEEEEec------------------CCC-----C-------CCCHHHHHHHHHHHHhcCCEE
Confidence 3456667789999999998887632 011 0 111235666777777777665
Q ss_pred ec--cC----------CCCCCCccC---CCcHHHHHHHHHHHHHHHHHHhcCCeEEe
Q 006203 378 SI--GD----------GLRPGSIYD---ANDTAQFAELLTQGELTRRAWDKDVQVMN 419 (657)
Q Consensus 378 SL--GD----------GLRPG~i~D---A~D~AQ~~EL~~LGEL~krA~e~gVQVMI 419 (657)
.. -| .++.|.+.- ..-+..++|...+.+....|++.|+.+-|
T Consensus 183 ~~Hae~~~~i~~~~~~~~~~G~~~~~~~~~~rp~~~E~~~v~~~~~la~~~g~~~hi 239 (477)
T PRK13404 183 MVHAENHDMIAWLTKRLLAAGLTAPKYHAISRPMLAEREATHRAIALAELVDVPILI 239 (477)
T ss_pred EEEeCCHHHHHHHHHHHHHCCCcchhhccccCCHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 32 11 122332210 11235677888888888888888888755
No 52
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=74.05 E-value=84 Score=30.00 Aligned_cols=180 Identities=16% Similarity=0.139 Sum_probs=88.0
Q ss_pred CCCChHHHHHHHHHHHHhCCCEe----eecCCCCChH---HHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHH
Q 006203 232 VASSIEEEVYKVQWATMWGADTV----MDLSTGRHIH---ETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRD 304 (657)
Q Consensus 232 ~~~~ie~EveKl~~A~~~GADtv----MDLSTGgdi~---~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d 304 (657)
.+.|++.=.+.++.+.++|||.| ||-..-.++. +.-++|-+..+.|+- .++.-.+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~---------------v~lm~~~~~~ 70 (210)
T TIGR01163 6 LSADFARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPID---------------VHLMVENPDR 70 (210)
T ss_pred hcCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEE---------------EEeeeCCHHH
Confidence 45566666677888899999995 4433322222 222333333333321 1111111224
Q ss_pred HHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCc-----CchhhhHHHHHHHHhHhceeEec
Q 006203 305 TLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKE-----NFAYEHWDEILDICNQYDVALSI 379 (657)
Q Consensus 305 ~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~E-----NplY~~FD~ileI~k~YDVtlSL 379 (657)
.++.-++.|+|.+++|.+-.-...... +.+..++.+ ++ ++..+++.++...-|..+ +
T Consensus 71 ~~~~~~~~gadgv~vh~~~~~~~~~~~----------------~~~~~~g~~~~~~~~~-~t~~e~~~~~~~~~d~i~-~ 132 (210)
T TIGR01163 71 YIEDFAEAGADIITVHPEASEHIHRLL----------------QLIKDLGAKAGIVLNP-ATPLEFLEYVLPDVDLVL-L 132 (210)
T ss_pred HHHHHHHcCCCEEEEccCCchhHHHHH----------------HHHHHcCCcEEEEECC-CCCHHHHHHHHhhCCEEE-E
Confidence 466667999999999997542221110 111111111 11 233445555544445533 3
Q ss_pred cCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCcccc
Q 006203 380 GDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTT 454 (657)
Q Consensus 380 GDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvT 454 (657)
++..||--.+..+..-+..+..+-+++... ..++.+++=| | + + .+|+..-.+ .++=.++.|--++
T Consensus 133 -~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~-~~~~~i~v~G-G-I--~--~env~~l~~--~gad~iivgsai~ 197 (210)
T TIGR01163 133 -MSVNPGFGGQKFIPDTLEKIREVRKMIDEN-GLSILIEVDG-G-V--N--DDNARELAE--AGADILVAGSAIF 197 (210)
T ss_pred -EEEcCCCCcccccHHHHHHHHHHHHHHHhc-CCCceEEEEC-C-c--C--HHHHHHHHH--cCCCEEEEChHHh
Confidence 245566555555555555555455554321 2235666666 4 3 3 256654333 3455676665444
No 53
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=73.87 E-value=18 Score=37.02 Aligned_cols=83 Identities=19% Similarity=0.222 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHh-cee
Q 006203 298 SWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQY-DVA 376 (657)
Q Consensus 298 t~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~Y-DVt 376 (657)
+.++|.+..+.-.+.|+|++.||++-- ...+ ||.+++ .+| +...+|++-+++. |+.
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP-----~~~~-------~g~~~~---------~~~--~~~~eiv~~vr~~~~~P 156 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCP-----NVKG-------GGMAFG---------TDP--EAVAEIVKAVKKATDVP 156 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCC-----CCCC-------Cccccc---------CCH--HHHHHHHHHHHhccCCC
Confidence 568888888877777999999998731 1111 233333 233 4556677777776 777
Q ss_pred EeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEE
Q 006203 377 LSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVM 418 (657)
Q Consensus 377 lSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVM 418 (657)
+++- |+|.. . ...++++++.++|++.+
T Consensus 157 v~vK--l~~~~----------~---~~~~~a~~~~~~G~d~i 183 (296)
T cd04740 157 VIVK--LTPNV----------T---DIVEIARAAEEAGADGL 183 (296)
T ss_pred EEEE--eCCCc----------h---hHHHHHHHHHHcCCCEE
Confidence 7755 55531 1 35678888999999854
No 54
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=73.66 E-value=84 Score=29.85 Aligned_cols=78 Identities=19% Similarity=0.175 Sum_probs=43.4
Q ss_pred CCCChHHHHHHHHHHHHhCCCEe----eecCCCCCh---HHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHH
Q 006203 232 VASSIEEEVYKVQWATMWGADTV----MDLSTGRHI---HETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRD 304 (657)
Q Consensus 232 ~~~~ie~EveKl~~A~~~GADtv----MDLSTGgdi---~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d 304 (657)
...|+..=.+.++.+.+.|+|.| ||.++-.+. .++-++|.+..+.|++ |+ |.-.+..+
T Consensus 7 ~~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-v~--------------l~~~d~~~ 71 (211)
T cd00429 7 LSADFANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLD-VH--------------LMVENPER 71 (211)
T ss_pred ecCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEE-EE--------------eeeCCHHH
Confidence 34456666677889999999987 344332222 1223333333223321 11 11111123
Q ss_pred HHHHHHhcCCCEEEEecccc
Q 006203 305 TLIEQAEQGVDYFTIHAGVL 324 (657)
Q Consensus 305 ~ieeQAeqGVDf~TIHaGv~ 324 (657)
.++.-++.|+|.++||.+..
T Consensus 72 ~~~~~~~~g~dgv~vh~~~~ 91 (211)
T cd00429 72 YIEAFAKAGADIITFHAEAT 91 (211)
T ss_pred HHHHHHHcCCCEEEECccch
Confidence 45556799999999999865
No 55
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=72.97 E-value=8.9 Score=33.11 Aligned_cols=91 Identities=13% Similarity=0.208 Sum_probs=68.0
Q ss_pred cccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhc
Q 006203 334 RMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDK 413 (657)
Q Consensus 334 RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~ 413 (657)
++.+|+++...-...+....+-. .|+.++++++-- +.|+.+--... ..-.++++.|-++
T Consensus 27 ~v~~v~d~~~~~~~~~~~~~~~~--~~~~~~~ll~~~-~~D~V~I~tp~------------------~~h~~~~~~~l~~ 85 (120)
T PF01408_consen 27 EVVAVCDPDPERAEAFAEKYGIP--VYTDLEELLADE-DVDAVIIATPP------------------SSHAEIAKKALEA 85 (120)
T ss_dssp EEEEEECSSHHHHHHHHHHTTSE--EESSHHHHHHHT-TESEEEEESSG------------------GGHHHHHHHHHHT
T ss_pred EEEEEEeCCHHHHHHHHHHhccc--chhHHHHHHHhh-cCCEEEEecCC------------------cchHHHHHHHHHc
Confidence 88999999988877775555444 999999888755 57766533221 2245788899999
Q ss_pred CCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCcc
Q 006203 414 DVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFY 447 (657)
Q Consensus 414 gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfY 447 (657)
|+-|++|-|--.-+.+.++=+++.++ ++.+++
T Consensus 86 g~~v~~EKP~~~~~~~~~~l~~~a~~--~~~~~~ 117 (120)
T PF01408_consen 86 GKHVLVEKPLALTLEEAEELVEAAKE--KGVKVM 117 (120)
T ss_dssp TSEEEEESSSSSSHHHHHHHHHHHHH--HTSCEE
T ss_pred CCEEEEEcCCcCCHHHHHHHHHHHHH--hCCEEE
Confidence 99999999998888888888777776 344443
No 56
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=72.80 E-value=29 Score=34.01 Aligned_cols=158 Identities=17% Similarity=0.236 Sum_probs=95.5
Q ss_pred HHHHHHHHHhCCCEeeecCCCCC-------hHHHHHHHHhcCCCcccc-chhhhH-HHHhcCccCCCCHHHHHHHHHHHH
Q 006203 240 VYKVQWATMWGADTVMDLSTGRH-------IHETREWILRNSAVPVGT-VPIYQA-LEKVDGIAENLSWEVFRDTLIEQA 310 (657)
Q Consensus 240 veKl~~A~~~GADtvMDLSTGgd-------i~~~R~~Il~nspvPVGT-VPIYqA-~~k~~g~~~~lt~e~~~d~ieeQA 310 (657)
-+.+.++.++| -.-+.|++++. +.++++.+ +...+.+.. .|.+.. +... -...+-..+.+.++++--.
T Consensus 18 ~~~l~~~~~~G-~~gvEi~~~~~~~~~~~~~~~l~~~l-~~~gl~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~a~ 94 (274)
T COG1082 18 EEILRKAAELG-FDGVELSPGDLFPADYKELAELKELL-ADYGLEITSLAPFSNNLLSPD-EEEREEALEELKRAIELAK 94 (274)
T ss_pred HHHHHHHHHhC-CCeEecCCcccCCchhhhHHHHHHHH-HHcCcEEEeecccCCCcCCCc-hhhHHHHHHHHHHHHHHHH
Confidence 35678888999 55567776333 34555544 455555554 666652 2111 0001234677888888889
Q ss_pred hcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccC
Q 006203 311 EQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYD 390 (657)
Q Consensus 311 eqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~D 390 (657)
+-|++++++|+|.....-... +.-..- .. .++.+.++++++++++|.|.+..-.=||++..
T Consensus 95 ~lg~~~vv~~~g~~~~~~~~~--------~~~~~~-~~----------~~~~l~~l~~~a~~~~i~l~~e~~~~~~~~~~ 155 (274)
T COG1082 95 ELGAKVVVVHPGLGAGADDPD--------SPEEAR-ER----------WAEALEELAEIAEELGIGLALENHHHPGNVVE 155 (274)
T ss_pred HcCCCeEEeecccCCcCCCCC--------CCcccH-HH----------HHHHHHHHHHHHHHhCCceEEeecCCccceee
Confidence 999999999998654332211 111000 22 36789999999999999999998555666544
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCC
Q 006203 391 ANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMH 428 (657)
Q Consensus 391 A~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~ 428 (657)
.. +|..+ +++.....+|.+++- +||.-+.
T Consensus 156 ~~--~~~~~------~~~~~~~~~v~~~lD-~~H~~~~ 184 (274)
T COG1082 156 TG--ADALD------LLREVDSPNVGLLLD-TGHAFFA 184 (274)
T ss_pred cC--HHHHH------HHHhcCCCceEEEEe-cCchhhc
Confidence 43 22222 223333346666664 8898776
No 57
>PRK09989 hypothetical protein; Provisional
Probab=71.95 E-value=37 Score=33.87 Aligned_cols=120 Identities=11% Similarity=-0.002 Sum_probs=67.3
Q ss_pred HHHHHHHHhCCCEeee-cCCCCChHHHHHHHHhcCCCccc--cchhhhHHHHhc-C-ccCCCCH----HHHHHHHHHHHh
Q 006203 241 YKVQWATMWGADTVMD-LSTGRHIHETREWILRNSAVPVG--TVPIYQALEKVD-G-IAENLSW----EVFRDTLIEQAE 311 (657)
Q Consensus 241 eKl~~A~~~GADtvMD-LSTGgdi~~~R~~Il~nspvPVG--TVPIYqA~~k~~-g-~~~~lt~----e~~~d~ieeQAe 311 (657)
+.++.+-++|=|.|== ...+-+..++|+.+ +...+.+- +.|.- .+.... + ....... +.+..+|+.-.+
T Consensus 19 ~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l-~~~Gl~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~i~~A~~ 96 (258)
T PRK09989 19 ERFAAARKAGFDAVEFLFPYDYSTLQIQKQL-EQNHLTLALFNTAPG-DINAGEWGLSALPGREHEARADIDLALEYALA 96 (258)
T ss_pred HHHHHHHHcCCCEEEECCcccCCHHHHHHHH-HHcCCcEEEeccCCC-ccCCCCCcccCCCccHHHHHHHHHHHHHHHHH
Confidence 6778888999998842 22345778888876 33333222 11210 000000 0 0011112 335555566678
Q ss_pred cCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCC
Q 006203 312 QGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRP 385 (657)
Q Consensus 312 qGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSLGDGLRP 385 (657)
-|++++.+|+|..... .+--..| +-+.+.+.++++++++++|+|-|= +|++
T Consensus 97 lg~~~v~v~~g~~~~~---------------~~~~~~~-------~~~~~~l~~l~~~a~~~gv~l~lE-~l~~ 147 (258)
T PRK09989 97 LNCEQVHVMAGVVPAG---------------EDAERYR-------AVFIDNLRYAADRFAPHGKRILVE-ALSP 147 (258)
T ss_pred hCcCEEEECccCCCCC---------------CCHHHHH-------HHHHHHHHHHHHHHHhcCCEEEEE-eCCC
Confidence 8999999999843211 1100111 224688999999999999999863 4444
No 58
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=71.21 E-value=7.2 Score=39.27 Aligned_cols=91 Identities=19% Similarity=0.102 Sum_probs=51.6
Q ss_pred CCceeEeeccccCCCCCChHHHHHHHHHHHHhCCCE----eeecCCCCChH---HHHHHHHhcCCCccccchhhhHHHHh
Q 006203 218 NFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADT----VMDLSTGRHIH---ETREWILRNSAVPVGTVPIYQALEKV 290 (657)
Q Consensus 218 ~l~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADt----vMDLSTGgdi~---~~R~~Il~nspvPVGTVPIYqA~~k~ 290 (657)
.+.++|..+| -+.+...+++|+++++ ++|+|. |||-.--.|+. .+=++|-+.+| .+|+
T Consensus 4 ~~~~~i~pSi-~~~d~~~l~~~~~~l~---~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~----~~~l------- 68 (228)
T PTZ00170 4 PLKAIIAPSI-LAADFSKLADEAQDVL---SGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLP----NTFL------- 68 (228)
T ss_pred CCCCEEehhH-hhcCHHHHHHHHHHHH---HcCCCEEEEecccCccCCCcCcCHHHHHHHHhcCC----CCCE-------
Confidence 4566777777 4555667888887764 678998 67743333321 12223333331 1111
Q ss_pred cCccCCCCHHHHHHHHHHHHhcCCCEEEEecccccc
Q 006203 291 DGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLR 326 (657)
Q Consensus 291 ~g~~~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~ 326 (657)
++ +|=.+.-...++.-++.|+|++|||+--...
T Consensus 69 --Dv-HLm~~~p~~~i~~~~~~Gad~itvH~ea~~~ 101 (228)
T PTZ00170 69 --DC-HLMVSNPEKWVDDFAKAGASQFTFHIEATED 101 (228)
T ss_pred --EE-EECCCCHHHHHHHHHHcCCCEEEEeccCCch
Confidence 11 1112334455677778899999999875443
No 59
>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM. This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs.
Probab=71.03 E-value=14 Score=39.61 Aligned_cols=86 Identities=17% Similarity=0.194 Sum_probs=57.0
Q ss_pred hhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHH----------HHHHHHHhcCCeEEeeCCCCCCCC
Q 006203 359 AYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQG----------ELTRRAWDKDVQVMNEGPGHIPMH 428 (657)
Q Consensus 359 lY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LG----------EL~krA~e~gVQVMIEGPGHVPl~ 428 (657)
+.+.+.+++++|+++++.+ ..+|+.....+.+....| |.++.+.++|+.|+.=-|. |+.
T Consensus 207 ~~e~i~~~v~~A~~~G~~v---------~sH~~~~~e~i~~a~~~Gv~~~E~~~t~e~a~~~~~~G~~v~~~~p~--~~r 275 (376)
T TIGR02318 207 GLANRSEIAALARARGIPL---------ASHDDDTPEHVAEAHDLGVTISEFPTTLEAAKEARSLGMQILMGAPN--IVR 275 (376)
T ss_pred cHHHHHHHHHHHHHCCCeE---------EEecCCCHHHHHHHHHCCCChhccCCCHHHHHHHHHcCCeEEECCcc--ccc
Confidence 4799999999999999877 666655555677766654 4788889999997643231 111
Q ss_pred chH--HHHHHHHHhcCCCCccccCccccccCCC
Q 006203 429 KIP--ENMQKQLEWCNEAPFYTLGPLTTDIAPG 459 (657)
Q Consensus 429 ~I~--~Nv~lqk~lC~~APfYvLGPLvTDIApG 459 (657)
.-. .|..+.+-+-.|.+. -|.||-.|+
T Consensus 276 ~~~~~~~~~l~~~~~~G~~~----~l~SD~~p~ 304 (376)
T TIGR02318 276 GGSHSGNLSARELAHEGLLD----VLASDYVPA 304 (376)
T ss_pred cccccchHHHHHHHHCCCcE----EEEcCCCcH
Confidence 111 144455555566643 577888774
No 60
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=70.54 E-value=15 Score=38.09 Aligned_cols=114 Identities=18% Similarity=0.229 Sum_probs=74.4
Q ss_pred CcCchhhhHHHHHHHHhHhce--eEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCC----
Q 006203 355 KENFAYEHWDEILDICNQYDV--ALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMH---- 428 (657)
Q Consensus 355 ~ENplY~~FD~ileI~k~YDV--tlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~---- 428 (657)
.++=.-.+.++||+++++|+| |+-+ .|.+++.+ -+++++..+.|-++..=|=.|..++
T Consensus 22 ~~~rv~~nt~riL~lL~~~gikATFFv-----~g~~~e~~-----------p~lir~i~~~GhEIgsHg~sH~~l~~ls~ 85 (265)
T TIGR03006 22 LPCRVERNTDRILDLLDRHGVKATFFT-----LGWVAERY-----------PELVRRIVAAGHELASHGYGHERVTTQTP 85 (265)
T ss_pred ccchHHHhHHHHHHHHHHcCCcEEEEE-----eccchhhC-----------HHHHHHHHHcCCEeeeccccCcCchhCCH
Confidence 344445689999999999998 5554 24444322 3678999999999999999999886
Q ss_pred -----chHHHHHHHHHhcCCCCccccCccccccCCCc--hhHHH-hHHHHHhhhcccceeeecCchhh--cCCCC
Q 006203 429 -----KIPENMQKQLEWCNEAPFYTLGPLTTDIAPGY--DHITS-AIGAANIGALGTALLCYVTPKEH--LGLPN 493 (657)
Q Consensus 429 -----~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGY--DHITs-AIGaA~aa~~GadfLCYVTPaEH--LgLP~ 493 (657)
+|+...+.-+++++..|-+...| +| ++-|. |+ .+...+|-.+-|-+-|.-| .|.|+
T Consensus 86 ee~~~eI~~s~~~Le~itG~~~~gfRaP-------~~s~~~~t~~a~--~iL~e~Gy~YdsS~~p~~~d~~g~~~ 151 (265)
T TIGR03006 86 EAFRADIRRSKALLEDLSGQPVRGYRAP-------SFSIGKKNLWAL--DVLAEAGYRYSSSIYPVRHDHYGMPD 151 (265)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceEEECC-------CCCCCCCcHHHH--HHHHHCCCEEEEeeccCcCCcCCCCC
Confidence 45556666666676665443333 32 22221 12 3456688888888876633 45553
No 61
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=70.51 E-value=30 Score=34.16 Aligned_cols=75 Identities=19% Similarity=0.189 Sum_probs=54.1
Q ss_pred HHHHHH-HHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCC
Q 006203 237 EEEVYK-VQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVD 315 (657)
Q Consensus 237 e~EveK-l~~A~~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGVD 315 (657)
.+++++ ++.|.+.|||-|-= +-.++++.+++. .+.+++|| +- -|.+.--|.+++++.+.+-.+.|++
T Consensus 142 ~~~i~~~~~~a~~~GaD~Ik~-~~~~~~~~~~~i-~~~~~~pv-----v~-----~GG~~~~~~~~~l~~~~~~~~~Ga~ 209 (235)
T cd00958 142 PDLIAYAARIGAELGADIVKT-KYTGDAESFKEV-VEGCPVPV-----VI-----AGGPKKDSEEEFLKMVYDAMEAGAA 209 (235)
T ss_pred HHHHHHHHHHHHHHCCCEEEe-cCCCCHHHHHHH-HhcCCCCE-----EE-----eCCCCCCCHHHHHHHHHHHHHcCCc
Confidence 378888 89999999998875 433478887665 46777664 21 1333445899999999999999999
Q ss_pred EEEEeccc
Q 006203 316 YFTIHAGV 323 (657)
Q Consensus 316 f~TIHaGv 323 (657)
-+.+=-.+
T Consensus 210 gv~vg~~i 217 (235)
T cd00958 210 GVAVGRNI 217 (235)
T ss_pred EEEechhh
Confidence 77654433
No 62
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=70.13 E-value=77 Score=32.20 Aligned_cols=176 Identities=16% Similarity=0.135 Sum_probs=94.4
Q ss_pred CCCCCChHHHHHHHHHHHHhCCCE----eeecCCCCChH---HHHHHHHhc-CCCccccchhhhHHHHhcCccCCCCHHH
Q 006203 230 SAVASSIEEEVYKVQWATMWGADT----VMDLSTGRHIH---ETREWILRN-SAVPVGTVPIYQALEKVDGIAENLSWEV 301 (657)
Q Consensus 230 S~~~~~ie~EveKl~~A~~~GADt----vMDLSTGgdi~---~~R~~Il~n-spvPVGTVPIYqA~~k~~g~~~~lt~e~ 301 (657)
|++...+++|++++. ++|+|. |||=.--.||. .+=++|-+. +.+|+ ++-=|. +.
T Consensus 8 ~ad~~~l~~~i~~l~---~~g~~~lH~DvmDG~Fvpn~tfg~~~i~~i~~~~~~~~~--------------dvHLMv-~~ 69 (220)
T PRK08883 8 SADFARLGEDVEKVL---AAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPI--------------DVHLMV-KP 69 (220)
T ss_pred hcCHHHHHHHHHHHH---HcCCCEEEEecccCcccCccccCHHHHHHHHHhCCCCCE--------------EEEecc-CC
Confidence 455566778887765 578998 67743333321 122222222 23331 111122 12
Q ss_pred HHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCc-----CchhhhHHHHHHHHhHhcee
Q 006203 302 FRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKE-----NFAYEHWDEILDICNQYDVA 376 (657)
Q Consensus 302 ~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~E-----NplY~~FD~ileI~k~YDVt 376 (657)
-.+.|+.-++.|+|++|||+--+.. +.+ +..|+..++.. || .|-++.|..++..-|..
T Consensus 70 p~~~i~~~~~~gad~i~~H~Ea~~~-~~~---------------~l~~ik~~g~k~GlalnP-~Tp~~~i~~~l~~~D~v 132 (220)
T PRK08883 70 VDRIIPDFAKAGASMITFHVEASEH-VDR---------------TLQLIKEHGCQAGVVLNP-ATPLHHLEYIMDKVDLI 132 (220)
T ss_pred HHHHHHHHHHhCCCEEEEcccCccc-HHH---------------HHHHHHHcCCcEEEEeCC-CCCHHHHHHHHHhCCeE
Confidence 3345566688999999999975421 111 22344444433 66 37888888999999988
Q ss_pred EeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCc
Q 006203 377 LSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGP 451 (657)
Q Consensus 377 lSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGP 451 (657)
|=+ +.-||--.=.--...+. .+.+|.+.-.++|..+-|+-=|-+- .+|+..-.+ .||=.++.|-
T Consensus 133 lvM--tV~PGfgGq~fi~~~le---kI~~l~~~~~~~~~~~~I~vdGGI~----~eni~~l~~--aGAd~vVvGS 196 (220)
T PRK08883 133 LLM--SVNPGFGGQSFIPHTLD---KLRAVRKMIDESGRDIRLEIDGGVK----VDNIREIAE--AGADMFVAGS 196 (220)
T ss_pred EEE--EecCCCCCceecHhHHH---HHHHHHHHHHhcCCCeeEEEECCCC----HHHHHHHHH--cCCCEEEEeH
Confidence 877 57777654333333333 3344444434455333333334443 446554333 4566666663
No 63
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=69.87 E-value=25 Score=35.99 Aligned_cols=161 Identities=19% Similarity=0.190 Sum_probs=96.1
Q ss_pred cccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccc--cC----cccCccccc--cH---H-
Q 006203 278 VGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLT--AK----RMTGIVSRG--GS---I- 345 (657)
Q Consensus 278 VGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~--~~----RvtgIVSRG--GS---i- 345 (657)
.-.||+-+.+.+ |. .-+.+++.+.+++-.+-|+|-+.+|.|......+.. .. |+.+.++=| |. +
T Consensus 21 ~~~~a~Dh~~l~--gp--~~~~~d~~~~~~~a~~~~~~av~v~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~ 96 (267)
T PRK07226 21 TVIVPMDHGVSH--GP--IDGLVDIRDTVNKVAEGGADAVLMHKGLARHGHRGYGRDVGLIVHLSASTSLSPDPNDKVLV 96 (267)
T ss_pred EEEEECCCcccc--CC--CcCcCCHHHHHHHHHhcCCCEEEeCHhHHhhhccccCCCCcEEEEEcCCCCCCCCCCcceee
Confidence 445777776553 22 348889999998888889999999999866644322 22 333333332 22 0
Q ss_pred -HHHHHHHcC-------------CcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHH
Q 006203 346 -HAKWCLAYH-------------KENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAW 411 (657)
Q Consensus 346 -~a~Wml~h~-------------~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~ 411 (657)
-+...+..+ +++..++...+|+++|++|++.|=+=+.-+-..+.+..|. ..+.++++.|-
T Consensus 97 ~~ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~------~~i~~a~~~a~ 170 (267)
T PRK07226 97 GTVEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDP------EVVAHAARVAA 170 (267)
T ss_pred ecHHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccH------HHHHHHHHHHH
Confidence 022333322 2556788888999999999987654222221222222232 24567788898
Q ss_pred hcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCcccc
Q 006203 412 DKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTT 454 (657)
Q Consensus 412 e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvT 454 (657)
+.|+-..=-+.. - . .+.++...+.|. .|.+..|=+-+
T Consensus 171 e~GAD~vKt~~~---~-~-~~~l~~~~~~~~-ipV~a~GGi~~ 207 (267)
T PRK07226 171 ELGADIVKTNYT---G-D-PESFREVVEGCP-VPVVIAGGPKT 207 (267)
T ss_pred HHCCCEEeeCCC---C-C-HHHHHHHHHhCC-CCEEEEeCCCC
Confidence 999987744421 1 1 134444444444 89999997664
No 64
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=69.82 E-value=1.3e+02 Score=30.40 Aligned_cols=142 Identities=15% Similarity=0.105 Sum_probs=79.7
Q ss_pred ceeEeeccccCCCCCChHHHHHHHHHHHHhCCCEeeecCCCCChHHHHHHH--HhcCCCccccchhhhHHHHhcCccCCC
Q 006203 220 LVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWI--LRNSAVPVGTVPIYQALEKVDGIAENL 297 (657)
Q Consensus 220 ~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADtvMDLSTGgdi~~~R~~I--l~nspvPVGTVPIYqA~~k~~g~~~~l 297 (657)
++.+++++|.+ ++++-++.++.+.+.|. +.+-+-.|.+.++-.+.| +|+. ++- .++| .++.+ ...
T Consensus 74 ~i~~~~~~~~~----~~~~~~~~~~~~~~~G~-~~~KiKvg~~~~~d~~~v~~vr~~-~g~-~~~l-----~vDan-~~~ 140 (265)
T cd03315 74 RVRVAHMLGLG----EPAEVAEEARRALEAGF-RTFKLKVGRDPARDVAVVAALREA-VGD-DAEL-----RVDAN-RGW 140 (265)
T ss_pred ceEEEEEecCC----CHHHHHHHHHHHHHCCC-CEEEEecCCCHHHHHHHHHHHHHh-cCC-CCEE-----EEeCC-CCc
Confidence 34556666543 45666677777888886 455566665543222211 1110 000 1111 11111 335
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchh-hhHHHHHHHHhHhcee
Q 006203 298 SWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAY-EHWDEILDICNQYDVA 376 (657)
Q Consensus 298 t~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY-~~FD~ileI~k~YDVt 376 (657)
|.++.++.+..-.+.|++|+-- |+- .+++.+-++.++.++.
T Consensus 141 ~~~~a~~~~~~l~~~~i~~iEe--------------------------------------P~~~~d~~~~~~l~~~~~ip 182 (265)
T cd03315 141 TPKQAIRALRALEDLGLDYVEQ--------------------------------------PLPADDLEGRAALARATDTP 182 (265)
T ss_pred CHHHHHHHHHHHHhcCCCEEEC--------------------------------------CCCcccHHHHHHHHhhCCCC
Confidence 6777777777666778888721 221 2467777788888888
Q ss_pred EeccCCCCCCCccCCCcHHHHHHH-------------------HHHHHHHHHHHhcCCeEEee
Q 006203 377 LSIGDGLRPGSIYDANDTAQFAEL-------------------LTQGELTRRAWDKDVQVMNE 420 (657)
Q Consensus 377 lSLGDGLRPG~i~DA~D~AQ~~EL-------------------~~LGEL~krA~e~gVQVMIE 420 (657)
+.+|-.+. +..++.++ ...-++++.|+++|+.+|+-
T Consensus 183 ia~dE~~~--------~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~ 237 (265)
T cd03315 183 IMADESAF--------TPHDAFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVG 237 (265)
T ss_pred EEECCCCC--------CHHHHHHHHHhCCCCEEEEecccccCHHHHHHHHHHHHHcCCcEEec
Confidence 88876542 22233332 33347788889999999875
No 65
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=69.77 E-value=40 Score=32.14 Aligned_cols=122 Identities=17% Similarity=0.268 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEec
Q 006203 300 EVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSI 379 (657)
Q Consensus 300 e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSL 379 (657)
+.+++.|++-++.||+++-+-.. +..++.+++.+.+|.++|++|++.|-+
T Consensus 13 ~~~~~~~~~~~~~g~~~v~lR~~------------------------------~~~~~~~~~~~~~l~~~~~~~~~~l~i 62 (196)
T TIGR00693 13 ADLLNRVEAALKGGVTLVQLRDK------------------------------GSNTRERLALAEKLQELCRRYGVPFIV 62 (196)
T ss_pred ccHHHHHHHHHhcCCCEEEEecC------------------------------CCCHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 56888999999999998844211 112344556666666666666655555
Q ss_pred cC----CCCCCC----c-cCCCcHHHHHHHH-----------HHHHHHHHHHhcCCeEEeeCC-CCC-------CCCchH
Q 006203 380 GD----GLRPGS----I-YDANDTAQFAELL-----------TQGELTRRAWDKDVQVMNEGP-GHI-------PMHKIP 431 (657)
Q Consensus 380 GD----GLRPG~----i-~DA~D~AQ~~EL~-----------~LGEL~krA~e~gVQVMIEGP-GHV-------Pl~~I~ 431 (657)
-| .++-|+ + .+..+..+..++. +.-|+. +|.+.|+....=|| .+- |..-+
T Consensus 63 ~~~~~la~~~g~~GvHl~~~~~~~~~~r~~~~~~~~ig~s~h~~~e~~-~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~- 140 (196)
T TIGR00693 63 NDRVDLALALGADGVHLGQDDLPASEARALLGPDKIIGVSTHNLEELA-EAEAEGADYIGFGPIFPTPTKKDPAPPAGV- 140 (196)
T ss_pred ECHHHHHHHcCCCEEecCcccCCHHHHHHhcCCCCEEEEeCCCHHHHH-HHhHcCCCEEEECCccCCCCCCCCCCCCCH-
Confidence 33 111111 1 1112333333332 124443 57778888865444 111 21112
Q ss_pred HHHHHHHHhcCCCCccccCccc
Q 006203 432 ENMQKQLEWCNEAPFYTLGPLT 453 (657)
Q Consensus 432 ~Nv~lqk~lC~~APfYvLGPLv 453 (657)
+.++.-++.+.+-|+|.+|=+.
T Consensus 141 ~~l~~~~~~~~~~pv~a~GGI~ 162 (196)
T TIGR00693 141 ELLREIAATSIDIPIVAIGGIT 162 (196)
T ss_pred HHHHHHHHhcCCCCEEEECCcC
Confidence 2333334445457888888654
No 66
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=69.53 E-value=56 Score=33.29 Aligned_cols=109 Identities=15% Similarity=0.143 Sum_probs=72.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHh-
Q 006203 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQY- 373 (657)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~Y- 373 (657)
.+++++.+.+.|+...+.|||-+.+- |-+-+...++ .+++.++++++.+.
T Consensus 16 g~iD~~~~~~~i~~l~~~Gv~gl~v~-GstGE~~~lt----------------------------~~Er~~l~~~~~~~~ 66 (284)
T cd00950 16 GSVDFDALERLIEFQIENGTDGLVVC-GTTGESPTLS----------------------------DEEHEAVIEAVVEAV 66 (284)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEEC-CCCcchhhCC----------------------------HHHHHHHHHHHHHHh
Confidence 47999999999999999999998765 5554443332 45566677777665
Q ss_pred --ceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCe-EEeeCCCCCCCCchHHHHHHHHHhcC--CCCcc
Q 006203 374 --DVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQ-VMNEGPGHIPMHKIPENMQKQLEWCN--EAPFY 447 (657)
Q Consensus 374 --DVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQ-VMIEGPGHVPl~~I~~Nv~lqk~lC~--~APfY 447 (657)
++.+-. |...-+++ ..-+|++.|.+.|+. ||+--|...+..+ ++-++.-+++|. +-|++
T Consensus 67 ~~~~~vi~------gv~~~~~~--------~~~~~a~~a~~~G~d~v~~~~P~~~~~~~-~~l~~~~~~ia~~~~~pi~ 130 (284)
T cd00950 67 NGRVPVIA------GTGSNNTA--------EAIELTKRAEKAGADAALVVTPYYNKPSQ-EGLYAHFKAIAEATDLPVI 130 (284)
T ss_pred CCCCcEEe------ccCCccHH--------HHHHHHHHHHHcCCCEEEEcccccCCCCH-HHHHHHHHHHHhcCCCCEE
Confidence 233332 22222222 236788889999998 8888787777765 666666677776 34554
No 67
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=69.46 E-value=30 Score=37.51 Aligned_cols=119 Identities=23% Similarity=0.261 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHH-hCCCEeeecCCC-CChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHH----
Q 006203 237 EEEVYKVQWATM-WGADTVMDLSTG-RHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQA---- 310 (657)
Q Consensus 237 e~EveKl~~A~~-~GADtvMDLSTG-gdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQA---- 310 (657)
-.-++|+..|++ .|+-.++-|.-+ |-... .... ....|++--|+-.... .+..+..||.+++-++|+.-+
T Consensus 82 i~~~k~l~davh~~G~~i~~QL~H~~Gr~~~--~~~~-~~~~~~~ps~~~~~~~-~~~~p~~mt~~eI~~ii~~f~~AA~ 157 (382)
T cd02931 82 IRTAKEMTERVHAYGTKIFLQLTAGFGRVCI--PGFL-GEDKPVAPSPIPNRWL-PEITCRELTTEEVETFVGKFGESAV 157 (382)
T ss_pred hHHHHHHHHHHHHcCCEEEEEccCcCCCccC--cccc-CCCCccCCCCCCCCcC-CCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 356777766665 899999999864 42211 0000 0012222222111000 013568899999998888765
Q ss_pred ---hcCCCEEEEec---cc-cccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHH
Q 006203 311 ---EQGVDYFTIHA---GV-LLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILD 368 (657)
Q Consensus 311 ---eqGVDf~TIHa---Gv-~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ile 368 (657)
+.|.|.+=||+ |- .-+.+.-..++.|. .-|||+.- +-.|+.+-.+.|-+
T Consensus 158 ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtD--eyGGslen-------R~rf~~eii~~vr~ 213 (382)
T cd02931 158 IAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTD--KYGGSLEN-------RLRFAIEIVEEIKA 213 (382)
T ss_pred HHHHcCCCEEEEeccccChHHHHhcCCccCCCCC--cCCCCHHH-------HhHHHHHHHHHHHH
Confidence 67999999998 63 44455444555555 36898753 34455555555444
No 68
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=69.31 E-value=8.6 Score=39.12 Aligned_cols=56 Identities=21% Similarity=0.351 Sum_probs=41.1
Q ss_pred CCCCCChHHHHHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHH
Q 006203 230 SAVASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQ 309 (657)
Q Consensus 230 S~~~~~ie~EveKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQ 309 (657)
.+...+.+.|+++|++=+++|||-++ |=|+|++ +.|++.+++-
T Consensus 140 hp~~~~~~~~~~~L~~Ki~aGA~f~i------------------------TQ~~fd~-------------~~~~~~~~~~ 182 (274)
T cd00537 140 HPEAPSLEEDIKRLKRKVDAGADFII------------------------TQLFFDN-------------DAFLRFVDRC 182 (274)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEe------------------------ecccccH-------------HHHHHHHHHH
Confidence 33444689999999999999999887 3344543 5566666666
Q ss_pred HhcCCCEEEEeccc
Q 006203 310 AEQGVDYFTIHAGV 323 (657)
Q Consensus 310 AeqGVDf~TIHaGv 323 (657)
.+.|++ +.|++||
T Consensus 183 ~~~gi~-vPIi~GI 195 (274)
T cd00537 183 RAAGIT-VPIIPGI 195 (274)
T ss_pred HHcCCC-CCEEeec
Confidence 678886 6788886
No 69
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=69.28 E-value=44 Score=35.37 Aligned_cols=117 Identities=25% Similarity=0.373 Sum_probs=62.9
Q ss_pred HHHHHHHHhHhcee-EeccCCCCCCCccCCCcHHHHHHHHHHH----------HHHHHHHhcCCeEEe-eC---CCCCCC
Q 006203 363 WDEILDICNQYDVA-LSIGDGLRPGSIYDANDTAQFAELLTQG----------ELTRRAWDKDVQVMN-EG---PGHIPM 427 (657)
Q Consensus 363 FD~ileI~k~YDVt-lSLGDGLRPG~i~DA~D~AQ~~EL~~LG----------EL~krA~e~gVQVMI-EG---PGHVPl 427 (657)
|++.++++.++.|. ++++-| .| ...+.+|...| +++++|.++|+...+ +| -||..-
T Consensus 76 ~~~~~~~~~~~~v~~v~~~~g-~p--------~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~g~ 146 (307)
T TIGR03151 76 VDELVDLVIEEKVPVVTTGAG-NP--------GKYIPRLKENGVKVIPVVASVALAKRMEKAGADAVIAEGMESGGHIGE 146 (307)
T ss_pred HHHHHHHHHhCCCCEEEEcCC-Cc--------HHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEEECcccCCCCCC
Confidence 46677777777665 444322 22 23556665444 678999999998776 45 599752
Q ss_pred CchHHHHHHHHHhcC--CCCccccCccccccCCCchhHHHhH-HHHHhhhcccceeeecCchhhcCCCChhHHHHHHH
Q 006203 428 HKIPENMQKQLEWCN--EAPFYTLGPLTTDIAPGYDHITSAI-GAANIGALGTALLCYVTPKEHLGLPNRDDVKAGVI 502 (657)
Q Consensus 428 ~~I~~Nv~lqk~lC~--~APfYvLGPLvTDIApGYDHITsAI-GaA~aa~~GadfLCYVTPaEHLgLP~~eDVkeGVi 502 (657)
. .++.+-++++. +-|+..-|=+. -+ .++.+|+ -||-+.+.|+.|||.. |- +..+..|+=++
T Consensus 147 ~---~~~~ll~~v~~~~~iPviaaGGI~----~~-~~~~~al~~GA~gV~iGt~f~~t~---Es---~~~~~~k~~l~ 210 (307)
T TIGR03151 147 L---TTMALVPQVVDAVSIPVIAAGGIA----DG-RGMAAAFALGAEAVQMGTRFLCAK---EC---NVHPNYKEKVL 210 (307)
T ss_pred C---cHHHHHHHHHHHhCCCEEEECCCC----CH-HHHHHHHHcCCCEeecchHHhccc---cc---CCCHHHHHHHH
Confidence 1 24444444443 25666655433 23 2343332 2344445555555542 21 44455566554
No 70
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=68.94 E-value=79 Score=34.57 Aligned_cols=171 Identities=17% Similarity=0.080 Sum_probs=94.2
Q ss_pred CCCCChHHHHHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCcc---C-----CCCHHHH
Q 006203 231 AVASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIA---E-----NLSWEVF 302 (657)
Q Consensus 231 ~~~~~ie~EveKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~---~-----~lt~e~~ 302 (657)
.+..++++.++.++.+++.|.|.|- ..+ .. + . .-| ...-+++.+..+.. . +. ..
T Consensus 10 lD~~~~~~~~~~~~~~~~~Gv~~ie-~g~--p~--~----~-----~~~-~~~i~~l~~~~~~~~ii~D~kl~d~-g~-- 71 (430)
T PRK07028 10 LDLLELDRAVEIAKEAVAGGADWIE-AGT--PL--I----K-----SEG-MNAIRTLRKNFPDHTIVADMKTMDT-GA-- 71 (430)
T ss_pred eccCCHHHHHHHHHHHHhcCCcEEE-eCC--HH--H----H-----Hhh-HHHHHHHHHHCCCCEEEEEeeeccc-hH--
Confidence 3567899999999999999999983 311 00 0 0 000 11112222221110 0 01 11
Q ss_pred HHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCC
Q 006203 303 RDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDG 382 (657)
Q Consensus 303 ~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSLGDG 382 (657)
.-++.-++.|+|++++|..-. ..+..++++.++++++-+-+|
T Consensus 72 -~~v~~a~~aGAdgV~v~g~~~-----------------------------------~~~~~~~i~~a~~~G~~~~~g-- 113 (430)
T PRK07028 72 -IEVEMAAKAGADIVCILGLAD-----------------------------------DSTIEDAVRAARKYGVRLMAD-- 113 (430)
T ss_pred -HHHHHHHHcCCCEEEEecCCC-----------------------------------hHHHHHHHHHHHHcCCEEEEE--
Confidence 155566789999999995311 011567888899988766553
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCC----CCCCchHHHHHHHHHhcCCCCccccCccccccCC
Q 006203 383 LRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGH----IPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAP 458 (657)
Q Consensus 383 LRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGH----VPl~~I~~Nv~lqk~lC~~APfYvLGPLvTDIAp 458 (657)
++. ..+. -+.++.|.+.|+....=+||+ .+. ...+.++..++.++ -|+++.|=+.+
T Consensus 114 ----~~s-~~t~---------~e~~~~a~~~GaD~I~~~pg~~~~~~~~-~~~~~l~~l~~~~~-iPI~a~GGI~~---- 173 (430)
T PRK07028 114 ----LIN-VPDP---------VKRAVELEELGVDYINVHVGIDQQMLGK-DPLELLKEVSEEVS-IPIAVAGGLDA---- 173 (430)
T ss_pred ----ecC-CCCH---------HHHHHHHHhcCCCEEEEEeccchhhcCC-ChHHHHHHHHhhCC-CcEEEECCCCH----
Confidence 111 1111 122477778899888878886 222 22345555555554 77777772211
Q ss_pred CchhHHHhHHHHHhhhcccceeeecCc
Q 006203 459 GYDHITSAIGAANIGALGTALLCYVTP 485 (657)
Q Consensus 459 GYDHITsAIGaA~aa~~GadfLCYVTP 485 (657)
+.+ .....+||+.+|..+-
T Consensus 174 --~n~------~~~l~aGAdgv~vGsa 192 (430)
T PRK07028 174 --ETA------AKAVAAGADIVIVGGN 192 (430)
T ss_pred --HHH------HHHHHcCCCEEEEChH
Confidence 222 2334568888887653
No 71
>PRK12677 xylose isomerase; Provisional
Probab=68.44 E-value=15 Score=40.11 Aligned_cols=121 Identities=16% Similarity=0.165 Sum_probs=71.7
Q ss_pred HHHHHHHHhCCCEeeecCCC------C-------ChHHHHHHHHhcCCCccccc-------hhhhH--HHHhcCccCCCC
Q 006203 241 YKVQWATMWGADTVMDLSTG------R-------HIHETREWILRNSAVPVGTV-------PIYQA--LEKVDGIAENLS 298 (657)
Q Consensus 241 eKl~~A~~~GADtvMDLSTG------g-------di~~~R~~Il~nspvPVGTV-------PIYqA--~~k~~g~~~~lt 298 (657)
|.+..+-++|++.|. |.-. - .+.++|+. ++..-+.|..| |.|.. +.--...+.+..
T Consensus 35 E~v~~~a~~Gf~gVE-lh~~~l~p~~~~~~~~~~~~~~lk~~-l~~~GL~v~~v~~n~f~~p~~~~g~lts~d~~~R~~A 112 (384)
T PRK12677 35 EAVHKLAELGAYGVT-FHDDDLVPFGATDAERDRIIKRFKKA-LDETGLVVPMVTTNLFTHPVFKDGAFTSNDRDVRRYA 112 (384)
T ss_pred HHHHHHHHhCCCEEE-ecccccCCCCCChhhhHHHHHHHHHH-HHHcCCeeEEEecCCCCCccccCCcCCCCCHHHHHHH
Confidence 677888899999884 4311 1 14455444 45556665544 22321 000001112223
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhH--hcee
Q 006203 299 WEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQ--YDVA 376 (657)
Q Consensus 299 ~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~--YDVt 376 (657)
-+.+.++|+--++-|+++|++|.|..-...+... .+-..| .-+-+.+++|++.+++ |+|.
T Consensus 113 i~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~-----------d~~~a~-------~~~~eaL~~l~~~A~~~G~gV~ 174 (384)
T PRK12677 113 LRKVLRNIDLAAELGAKTYVMWGGREGAEYDAAK-----------DVRAAL-------DRYREAIDLLAAYVKDQGYDLR 174 (384)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeCCCCccCcccC-----------CHHHHH-------HHHHHHHHHHHHHHHhcCCCcE
Confidence 4567888899999999999999994322111111 122233 2235778899999998 8899
Q ss_pred EeccC
Q 006203 377 LSIGD 381 (657)
Q Consensus 377 lSLGD 381 (657)
|+|=-
T Consensus 175 laIEp 179 (384)
T PRK12677 175 FALEP 179 (384)
T ss_pred EEEcc
Confidence 99977
No 72
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=67.48 E-value=34 Score=38.64 Aligned_cols=78 Identities=22% Similarity=0.287 Sum_probs=46.7
Q ss_pred ceeEeeccccCCCCCChHHHHHHHHHHHHhCCCEe-eecCCCCChH--HHHHHHHhc---CCCccccchhhhHHHHhcCc
Q 006203 220 LVKVNANIGNSAVASSIEEEVYKVQWATMWGADTV-MDLSTGRHIH--ETREWILRN---SAVPVGTVPIYQALEKVDGI 293 (657)
Q Consensus 220 ~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADtv-MDLSTGgdi~--~~R~~Il~n---spvPVGTVPIYqA~~k~~g~ 293 (657)
+.-|-+-+|++. ++++.++..+++|+|.| +|.+.|.... +.=++|-+. .+|-.|+|--.+.+..+
T Consensus 229 rL~Vgaavg~~~------~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~--- 299 (495)
T PTZ00314 229 QLLVGAAISTRP------EDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNL--- 299 (495)
T ss_pred CEEEEEEECCCH------HHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHH---
Confidence 444666666654 45788888999999998 4887663332 223333333 33444555444433332
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCEEEE--ecc
Q 006203 294 AENLSWEVFRDTLIEQAEQGVDYFTI--HAG 322 (657)
Q Consensus 294 ~~~lt~e~~~d~ieeQAeqGVDf~TI--HaG 322 (657)
.+.|+||+-+ +.|
T Consensus 300 ----------------~~aGad~I~vg~g~G 314 (495)
T PTZ00314 300 ----------------IDAGADGLRIGMGSG 314 (495)
T ss_pred ----------------HHcCCCEEEECCcCC
Confidence 5789999864 554
No 73
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=65.80 E-value=13 Score=37.31 Aligned_cols=79 Identities=16% Similarity=0.199 Sum_probs=42.4
Q ss_pred HHHHHHHHhCCCEe-------------eecCCCCChHHHHHHHHhcCCCccccchhhh----HHHHhcCccCCCCHHHHH
Q 006203 241 YKVQWATMWGADTV-------------MDLSTGRHIHETREWILRNSAVPVGTVPIYQ----ALEKVDGIAENLSWEVFR 303 (657)
Q Consensus 241 eKl~~A~~~GADtv-------------MDLSTGgdi~~~R~~Il~nspvPVGTVPIYq----A~~k~~g~~~~lt~e~~~ 303 (657)
+.++.+-++|-|.| +|+| ..++.++|+.+ +...+.|..+-... .+...+..+.+-..+.+.
T Consensus 20 e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~-~~~~~~~~~~l-~~~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~~~~ 97 (279)
T TIGR00542 20 ERLQLAKTCGFDFVEMSVDETDDRLSRLDWS-REQRLALVNAI-IETGVRIPSMCLSAHRRFPLGSKDKAVRQQGLEIME 97 (279)
T ss_pred HHHHHHHHcCCCEEEEecCCccchhhccCCC-HHHHHHHHHHH-HHcCCCceeeecCCCccCcCCCcCHHHHHHHHHHHH
Confidence 34567779999998 3332 23455555554 55556654332110 000000001111235577
Q ss_pred HHHHHHHhcCCCEEEEec
Q 006203 304 DTLIEQAEQGVDYFTIHA 321 (657)
Q Consensus 304 d~ieeQAeqGVDf~TIHa 321 (657)
+.|+--.+-|+.+++++.
T Consensus 98 ~~i~~a~~lG~~~v~~~~ 115 (279)
T TIGR00542 98 KAIQLARDLGIRTIQLAG 115 (279)
T ss_pred HHHHHHHHhCCCEEEecC
Confidence 777778889999998864
No 74
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=65.79 E-value=7.2 Score=39.74 Aligned_cols=143 Identities=17% Similarity=0.131 Sum_probs=83.6
Q ss_pred HHHHHHHHhCCCEeeecCCCCC-----------hHHHHHHHHhcCCCc---cccchhhh-HHHHhcCccCCCCHHHHHHH
Q 006203 241 YKVQWATMWGADTVMDLSTGRH-----------IHETREWILRNSAVP---VGTVPIYQ-ALEKVDGIAENLSWEVFRDT 305 (657)
Q Consensus 241 eKl~~A~~~GADtvMDLSTGgd-----------i~~~R~~Il~nspvP---VGTVPIYq-A~~k~~g~~~~lt~e~~~d~ 305 (657)
+-+..|.+.|+|+|+=...... +.++|+..-++. +. +..-..|- -+.--+..+.+.+.+.|.+.
T Consensus 15 ~a~~~~~~~G~~~~qif~~~P~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~Hapy~iNlas~~~~~r~~sv~~~~~~ 93 (274)
T TIGR00587 15 AAYNRAAEIGATAFMFFLKSPRWWRRPMLEEEVIDWFKAALETNK-NLSQIVLVHAPYLINLASPDEEKEEKSLDVLDEE 93 (274)
T ss_pred HHHHHHHHhCCCEEEEEecCccccCCCCCCHHHHHHHHHHHHHcC-CCCcceeccCCeeeecCCCCHHHHHHHHHHHHHH
Confidence 3567889999999986554443 455555544442 32 33333342 11111222334567889999
Q ss_pred HHHHHhcCCCEEEEeccccccc-----cccccCcccCccccccHHHHHHHHHc--CCcCchhhhHHHHHHHHhHh-----
Q 006203 306 LIEQAEQGVDYFTIHAGVLLRY-----IPLTAKRMTGIVSRGGSIHAKWCLAY--HKENFAYEHWDEILDICNQY----- 373 (657)
Q Consensus 306 ieeQAeqGVDf~TIHaGv~~~~-----v~~~~~RvtgIVSRGGSi~a~Wml~h--~~ENplY~~FD~ileI~k~Y----- 373 (657)
|+.-.+-|.+++++|.|-.... +.+...-+.-++..... ..-++.| ..+|.+...++++.+++++.
T Consensus 94 i~~A~~lga~~vv~H~G~~~~~~~e~~~~~~~~~l~~l~~~~~~--v~l~lEN~~~~~~~l~~~~~el~~ll~~~~~~~~ 171 (274)
T TIGR00587 94 LKRCELLGIMLYNFHPGSALKCSEEEGLDNLIESLNVVIKETKI--VTILLENMAGQGSELGRSFEELAYIIKVIVDKRR 171 (274)
T ss_pred HHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHhccCC--CEEEEEeCCCCCCccCCCHHHHHHHHHhcCCCCc
Confidence 9999999999999999975321 11111111111221111 2234443 45778889999999999765
Q ss_pred -ceeEeccCCCCCC
Q 006203 374 -DVALSIGDGLRPG 386 (657)
Q Consensus 374 -DVtlSLGDGLRPG 386 (657)
.++|=.|-..-.|
T Consensus 172 lg~~lDt~H~~~~g 185 (274)
T TIGR00587 172 IGVCLDTCHFFAAG 185 (274)
T ss_pred eEEEEEhhhHHhcC
Confidence 3677777766666
No 75
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=65.73 E-value=85 Score=34.49 Aligned_cols=80 Identities=19% Similarity=0.171 Sum_probs=46.2
Q ss_pred HHHHHHhCCCEeeecC----CCCChHHHHHHHHhcCC------------CccccchhhhHHHHhc--Ccc--CCCCHHHH
Q 006203 243 VQWATMWGADTVMDLS----TGRHIHETREWILRNSA------------VPVGTVPIYQALEKVD--GIA--ENLSWEVF 302 (657)
Q Consensus 243 l~~A~~~GADtvMDLS----TGgdi~~~R~~Il~nsp------------vPVGTVPIYqA~~k~~--g~~--~~lt~e~~ 302 (657)
+.+.-++|+-.++-.. ...+.+.++++|.+.-+ .|+..==+|+.+..+. +.. ..++..+.
T Consensus 64 a~avs~~GglGvl~~~gl~~~~~~~e~l~~qi~~~~~~~~~~~~~~~~~~P~~p~l~~~iv~~~~~~~V~v~vr~~~~~~ 143 (368)
T PRK08649 64 AIELGKLGGLGVLNLEGLWTRYEDPEPILDEIASLGKDEATRLMQELYAEPIKPELITERIAEIRDAGVIVAVSLSPQRA 143 (368)
T ss_pred HHHHHhCCCceEEeeccccccCCCHHHHHHHHHhcCcHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCeEEEEEecCCcCH
Confidence 4566789998888721 23578888888865433 2222100133333221 211 22344455
Q ss_pred HHHHHHHHhcCCCEEEEecc
Q 006203 303 RDTLIEQAEQGVDYFTIHAG 322 (657)
Q Consensus 303 ~d~ieeQAeqGVDf~TIHaG 322 (657)
.+.++.-.+.|||++++|..
T Consensus 144 ~e~a~~l~eaGvd~I~vhgr 163 (368)
T PRK08649 144 QELAPTVVEAGVDLFVIQGT 163 (368)
T ss_pred HHHHHHHHHCCCCEEEEecc
Confidence 66666667899999999985
No 76
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=65.37 E-value=9.1 Score=40.85 Aligned_cols=66 Identities=27% Similarity=0.281 Sum_probs=41.6
Q ss_pred HHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 006203 240 VYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTI 319 (657)
Q Consensus 240 veKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGVDf~TI 319 (657)
+|-+..|+++|||.|| | ..-..+++|+.+=.. .+. + .++.++-|. +=+++|.+-|+-||||+.+
T Consensus 198 le~~~eAl~agaDiIm-L-DNm~~e~~~~av~~l-~~~----~--~~~lEaSGg-------It~~ni~~yA~tGVD~IS~ 261 (280)
T COG0157 198 LEEAEEALEAGADIIM-L-DNMSPEELKEAVKLL-GLA----G--RALLEASGG-------ITLENIREYAETGVDVISV 261 (280)
T ss_pred HHHHHHHHHcCCCEEE-e-cCCCHHHHHHHHHHh-ccC----C--ceEEEEeCC-------CCHHHHHHHhhcCCCEEEe
Confidence 3557788999999999 3 233567777765332 000 0 222233333 3368899999999999976
Q ss_pred ec
Q 006203 320 HA 321 (657)
Q Consensus 320 Ha 321 (657)
=+
T Consensus 262 ga 263 (280)
T COG0157 262 GA 263 (280)
T ss_pred Cc
Confidence 43
No 77
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=65.22 E-value=52 Score=33.16 Aligned_cols=79 Identities=13% Similarity=0.053 Sum_probs=51.8
Q ss_pred hhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHH-HHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHH
Q 006203 360 YEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELL-TQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQL 438 (657)
Q Consensus 360 Y~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~-~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk 438 (657)
-++|.+.+++|++.++..=.=-|-+. ..+-.+..++..+. .|.+|++.|.++||.+.+|.-+.-.++.+.+..++.+
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~~~--~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~~~~~~~t~~~~~~li~ 170 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAGYDV--YYEEHDEETRRRFREGLKEAVELAARAQVTLAVEIMDTPFMSSISKWLKWDH 170 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCccc--ccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEeeCCCchhcCHHHHHHHHH
Confidence 56789999999999865322112111 12233455555554 6889999999999999999632234566666666665
Q ss_pred Hh
Q 006203 439 EW 440 (657)
Q Consensus 439 ~l 440 (657)
.+
T Consensus 171 ~v 172 (279)
T TIGR00542 171 YL 172 (279)
T ss_pred Hc
Confidence 54
No 78
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=65.13 E-value=30 Score=35.44 Aligned_cols=101 Identities=21% Similarity=0.239 Sum_probs=67.0
Q ss_pred HHHHH-HHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCE
Q 006203 238 EEVYK-VQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDY 316 (657)
Q Consensus 238 ~EveK-l~~A~~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGVDf 316 (657)
+++.. .+.|.+.|||-|-- |..+++..+|+++ +.++ +|++-+ |.+..=|++++++.+.+-.+.|.+-
T Consensus 160 ~~i~~a~~~a~e~GAD~vKt-~~~~~~~~l~~~~-~~~~-----ipV~a~-----GGi~~~~~~~~l~~v~~~~~aGA~G 227 (267)
T PRK07226 160 EVVAHAARVAAELGADIVKT-NYTGDPESFREVV-EGCP-----VPVVIA-----GGPKTDTDREFLEMVRDAMEAGAAG 227 (267)
T ss_pred HHHHHHHHHHHHHCCCEEee-CCCCCHHHHHHHH-HhCC-----CCEEEE-----eCCCCCCHHHHHHHHHHHHHcCCcE
Confidence 45555 48899999999965 4445788887665 4444 454332 4445457899999999999999994
Q ss_pred EEEeccccccccc-cccCcccCccccccHHHHHHH
Q 006203 317 FTIHAGVLLRYIP-LTAKRMTGIVSRGGSIHAKWC 350 (657)
Q Consensus 317 ~TIHaGv~~~~v~-~~~~RvtgIVSRGGSi~a~Wm 350 (657)
+.+=-.|...-=| ....++..+|.+|.|.=.+|=
T Consensus 228 is~gr~i~~~~~p~~~~~~l~~~v~~~~~~~ea~~ 262 (267)
T PRK07226 228 VAVGRNVFQHEDPEAITRAISAVVHEGASVEEALK 262 (267)
T ss_pred EehhhhhhcCCCHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4433333222112 244788888888877766653
No 79
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=64.50 E-value=40 Score=37.18 Aligned_cols=199 Identities=17% Similarity=0.218 Sum_probs=128.9
Q ss_pred cCCCCCChHHHHHHHHHHHHhCCCEe----eecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHH
Q 006203 229 NSAVASSIEEEVYKVQWATMWGADTV----MDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRD 304 (657)
Q Consensus 229 tS~~~~~ie~EveKl~~A~~~GADtv----MDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d 304 (657)
|..++.|++.-++....-.++|+|-| -|.-....|.+||+ .+++|+ +.|+--| ..
T Consensus 26 tnt~T~Dv~atv~QI~~L~~aGceiVRvavp~~~~A~al~~I~~----~~~iPl---------------VADIHFd--~~ 84 (346)
T TIGR00612 26 TNTDTIDIDSTVAQIRALEEAGCDIVRVTVPDRESAAAFEAIKE----GTNVPL---------------VADIHFD--YR 84 (346)
T ss_pred CCCCchhHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHh----CCCCCE---------------EEeeCCC--cH
Confidence 45668899999999999999999954 55555555555555 777775 2222222 22
Q ss_pred HHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCC
Q 006203 305 TLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLR 384 (657)
Q Consensus 305 ~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSLGDGLR 384 (657)
.-.+-+++|||-+-|-.| +|-+ .++|.++.+.||+|++.+=+| .=
T Consensus 85 lAl~a~~~g~dkiRINPG--------------Nig~-------------------~e~v~~vv~~ak~~~ipIRIG--VN 129 (346)
T TIGR00612 85 LAALAMAKGVAKVRINPG--------------NIGF-------------------RERVRDVVEKARDHGKAMRIG--VN 129 (346)
T ss_pred HHHHHHHhccCeEEECCC--------------CCCC-------------------HHHHHHHHHHHHHCCCCEEEe--cC
Confidence 334558999999999888 2211 589999999999999998775 44
Q ss_pred CCCccCCCcHHHHHHH--HHHHHHHHHH-------HhcC---CeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCcc
Q 006203 385 PGSIYDANDTAQFAEL--LTQGELTRRA-------WDKD---VQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPL 452 (657)
Q Consensus 385 PG~i~DA~D~AQ~~EL--~~LGEL~krA-------~e~g---VQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPL 452 (657)
.||+. ...+++. -+---|++-| .+.| +-+-+. -+=+...|++|-.+.++ |+ -||. ==
T Consensus 130 ~GSL~----~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS~K--sSdv~~~i~ayr~la~~-~d-yPLH---lG 198 (346)
T TIGR00612 130 HGSLE----RRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLSMK--ASDVAETVAAYRLLAER-SD-YPLH---LG 198 (346)
T ss_pred CCCCc----HHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEE--cCCHHHHHHHHHHHHhh-CC-CCce---ec
Confidence 56654 2222211 0111133333 3333 333343 23345578888888776 54 4443 33
Q ss_pred ccccCCCchhH---HHhHHHHHhhhcccceeeecCchhhcCCCChhHHHHH
Q 006203 453 TTDIAPGYDHI---TSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKAG 500 (657)
Q Consensus 453 vTDIApGYDHI---TsAIGaA~aa~~GadfLCYVTPaEHLgLP~~eDVkeG 500 (657)
||--+++++=+ +.+||..+.---|--+-.-+|.. | .++|+-|
T Consensus 199 VTEAG~~~~G~IKSaigig~LL~~GIGDTIRVSLT~d-----P-~~EV~va 243 (346)
T TIGR00612 199 VTEAGMGVKGIVKSSAGIGILLARGIGDTIRVSLTDD-----P-THEVPVA 243 (346)
T ss_pred cccCCCCCCchhHHHHHHHHHHhhCCCCeEEEECCCC-----c-HHHHHHH
Confidence 88888888864 56788888888898899998842 3 6666554
No 80
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=64.49 E-value=1.5e+02 Score=31.18 Aligned_cols=151 Identities=17% Similarity=0.154 Sum_probs=79.7
Q ss_pred CCceeEeeccccCCCCCChHHHHHHHHHHHHhCCCEe-eecCCCCC-----hHHHHHHHH--hcCCCccc-cchhhhHHH
Q 006203 218 NFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTV-MDLSTGRH-----IHETREWIL--RNSAVPVG-TVPIYQALE 288 (657)
Q Consensus 218 ~l~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADtv-MDLSTGgd-----i~~~R~~Il--~nspvPVG-TVPIYqA~~ 288 (657)
.-++.+.+++|.... ++++-++.++.+.+.|.++| +-+..+ + +...++.|- |+. +| .++|. .
T Consensus 124 ~~~v~~~~~~~~~~~--~~~~~~~~a~~~~~~Gf~~~Kik~g~~-~~~~~~~~~d~~~v~~ir~~---~g~~~~l~---v 194 (357)
T cd03316 124 RDRVRVYASGGGYDD--SPEELAEEAKRAVAEGFTAVKLKVGGP-DSGGEDLREDLARVRAVREA---VGPDVDLM---V 194 (357)
T ss_pred CCceeeEEecCCCCC--CHHHHHHHHHHHHHcCCCEEEEcCCCC-CcchHHHHHHHHHHHHHHHh---hCCCCEEE---E
Confidence 356667776653221 56666777888889999987 333222 2 222222211 110 00 01110 0
Q ss_pred HhcCccCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhh-hHHHHH
Q 006203 289 KVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYE-HWDEIL 367 (657)
Q Consensus 289 k~~g~~~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~-~FD~il 367 (657)
.++ ..+|.++.++.+..-.+.|++|+= -|+.. .++.+-
T Consensus 195 DaN---~~~~~~~a~~~~~~l~~~~i~~iE--------------------------------------qP~~~~~~~~~~ 233 (357)
T cd03316 195 DAN---GRWDLAEAIRLARALEEYDLFWFE--------------------------------------EPVPPDDLEGLA 233 (357)
T ss_pred ECC---CCCCHHHHHHHHHHhCccCCCeEc--------------------------------------CCCCccCHHHHH
Confidence 112 235666666666555455666531 13322 566677
Q ss_pred HHHhHhceeEeccCCCCCCCccCCCcHHHHH----------------HHHHHHHHHHHHHhcCCeEEeeCCC
Q 006203 368 DICNQYDVALSIGDGLRPGSIYDANDTAQFA----------------ELLTQGELTRRAWDKDVQVMNEGPG 423 (657)
Q Consensus 368 eI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~----------------EL~~LGEL~krA~e~gVQVMIEGPG 423 (657)
++.++.++-+.+|..++ |-.|..++. -+...-++++.|.++|++||+-+-+
T Consensus 234 ~l~~~~~ipi~~dE~~~-----~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~~ 300 (357)
T cd03316 234 RLRQATSVPIAAGENLY-----TRWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHGAG 300 (357)
T ss_pred HHHHhCCCCEEeccccc-----cHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeccCCC
Confidence 77777788888777653 222222221 1233347778899999999986543
No 81
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=64.35 E-value=22 Score=31.38 Aligned_cols=94 Identities=17% Similarity=0.151 Sum_probs=55.7
Q ss_pred HhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCC--CHHHHHHHHHHHHhcCCCEEEEeccccc
Q 006203 248 MWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENL--SWEVFRDTLIEQAEQGVDYFTIHAGVLL 325 (657)
Q Consensus 248 ~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~l--t~e~~~d~ieeQAeqGVDf~TIHaGv~~ 325 (657)
.+|..+|.||.+.... .......+-.=.+|+-+ ....++ ..+.+.+.|++..++|- -+-|||-
T Consensus 25 ~~gi~~VI~l~~~~~~-----~~~~~~~~~~~~~~~~D------~~~~~~~~~~~~~~~~i~~~~~~~~-~vlVHC~--- 89 (139)
T cd00127 25 KLGITHVLNVAKEVPN-----ENLFLSDFNYLYVPILD------LPSQDISKYFDEAVDFIDDAREKGG-KVLVHCL--- 89 (139)
T ss_pred HcCCCEEEEcccCCCC-----cccCCCCceEEEEEcee------CCCCChHHHHHHHHHHHHHHHhcCC-cEEEECC---
Confidence 4999999999887654 11111112222223221 111222 24556677777777775 5779992
Q ss_pred cccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhH
Q 006203 326 RYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQ 372 (657)
Q Consensus 326 ~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~ 372 (657)
.| .||.|.+++.|.+.+...+| ++.++..++
T Consensus 90 ------~G-----~~Rs~~~~~~~l~~~~~~~~-----~~a~~~vr~ 120 (139)
T cd00127 90 ------AG-----VSRSATLVIAYLMKTLGLSL-----REAYEFVKS 120 (139)
T ss_pred ------CC-----CchhHHHHHHHHHHHcCCCH-----HHHHHHHHH
Confidence 22 48999999999988876543 555555554
No 82
>PRK09206 pyruvate kinase; Provisional
Probab=64.27 E-value=37 Score=38.50 Aligned_cols=95 Identities=21% Similarity=0.148 Sum_probs=60.2
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcC---------CcCc-hhhhH
Q 006203 294 AENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYH---------KENF-AYEHW 363 (657)
Q Consensus 294 ~~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~---------~ENp-lY~~F 363 (657)
+..||+.|..| |+--+++||||+.+-.==+.+.+.. +..|+...+ =||+ -++++
T Consensus 167 lp~ltekD~~d-i~f~~~~~vD~ia~SFVr~~~Dv~~---------------~r~~l~~~~~~~~~iiaKIEt~eav~nl 230 (470)
T PRK09206 167 LPALAEKDKQD-LIFGCEQGVDFVAASFIRKRSDVLE---------------IREHLKAHGGENIQIISKIENQEGLNNF 230 (470)
T ss_pred CCCCCHHHHHH-HHHHHHcCCCEEEEcCCCCHHHHHH---------------HHHHHHHcCCCCceEEEEECCHHHHHhH
Confidence 35688899877 6888999999998754222222221 122333222 1332 36788
Q ss_pred HHHHHHH-----hHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe
Q 006203 364 DEILDIC-----NQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN 419 (657)
Q Consensus 364 D~ileI~-----k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMI 419 (657)
|+||+.+ .+.|..+++| -..+.+ .+-++.+.|+++|+.|++
T Consensus 231 deIl~~~DgImVaRGDLgvelg-------------~e~vp~--~qk~ii~~~~~~gkpvI~ 276 (470)
T PRK09206 231 DEILEASDGIMVARGDLGVEIP-------------VEEVIF--AQKMMIEKCNRARKVVIT 276 (470)
T ss_pred HHHHHhCCEEEECcchhhhhcC-------------HHHHHH--HHHHHHHHHHHcCCCEEE
Confidence 8888873 3556666666 223333 467889999999999887
No 83
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=64.21 E-value=2.1e+02 Score=32.88 Aligned_cols=46 Identities=20% Similarity=0.120 Sum_probs=33.3
Q ss_pred CceEeecCC-ceeEeeccccCCCCCChHHHHHHHHHHHHhCCCEeeecCCC
Q 006203 211 EPMIVGRNF-LVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLSTG 260 (657)
Q Consensus 211 ~p~~IG~~l-~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADtvMDLSTG 260 (657)
.+.-||... .+||=|-|=..+.. ++-++++..-++.|||- .|+-.+
T Consensus 141 ~~~~i~~~~p~~~v~aEI~~a~~l---~~i~~~A~~~~~~GADI-IDIG~~ 187 (499)
T TIGR00284 141 GSLKIPLKPPPLRVVAEIPPTVAE---DGIEGLAARMERDGADM-VALGTG 187 (499)
T ss_pred cCcCCCCCCCCeEEEEEEcCCcch---HHHHHHHHHHHHCCCCE-EEECCC
Confidence 355577776 78888888655543 66688888889999984 587443
No 84
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=64.06 E-value=61 Score=36.31 Aligned_cols=75 Identities=20% Similarity=0.208 Sum_probs=46.3
Q ss_pred ceeEeeccccCCCCCChHHHHHHHHHHHHhCCCEeeecCC-CC--ChHHHHHHHHhcC-CCc--cccchhhhHHHHhcCc
Q 006203 220 LVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLST-GR--HIHETREWILRNS-AVP--VGTVPIYQALEKVDGI 293 (657)
Q Consensus 220 ~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADtvMDLST-Gg--di~~~R~~Il~ns-pvP--VGTVPIYqA~~k~~g~ 293 (657)
+.+|-++||++.+. ++.++.-+++|+|.|.=-++ |. ++-+..++|.+.. ++| +|+|=-++.+..
T Consensus 216 ~l~V~aai~~~~~~------~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~---- 285 (486)
T PRK05567 216 RLRVGAAVGVGADN------EERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARA---- 285 (486)
T ss_pred CEEEEeecccCcch------HHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHH----
Confidence 56788899887532 56666677789997753333 32 3455666776665 455 455544443332
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCEEEE
Q 006203 294 AENLSWEVFRDTLIEQAEQGVDYFTI 319 (657)
Q Consensus 294 ~~~lt~e~~~d~ieeQAeqGVDf~TI 319 (657)
. .+.|+|++-+
T Consensus 286 -----------l----~~aGad~i~v 296 (486)
T PRK05567 286 -----------L----IEAGADAVKV 296 (486)
T ss_pred -----------H----HHcCCCEEEE
Confidence 2 4679999874
No 85
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=64.05 E-value=84 Score=34.95 Aligned_cols=146 Identities=18% Similarity=0.238 Sum_probs=86.5
Q ss_pred ceeEeeccccCCCCCChHHHHHHHHHHHHhCCCEee-ecCCCC--ChHHHHHHHHhc---CCCccccchhhhHHHHhcCc
Q 006203 220 LVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVM-DLSTGR--HIHETREWILRN---SAVPVGTVPIYQALEKVDGI 293 (657)
Q Consensus 220 ~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADtvM-DLSTGg--di~~~R~~Il~n---spvPVGTVPIYqA~~k~~g~ 293 (657)
+..|.+.+|++. ..+++++..+++|+|.|. |.+-|. +..++=++|-+. .+|-+|+|=-++
T Consensus 212 ~l~V~aav~~~~------~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~-------- 277 (450)
T TIGR01302 212 RLIVGAAVGTRE------FDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAE-------- 277 (450)
T ss_pred CEEEEEEecCch------hHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHH--------
Confidence 567888888754 346777788889999986 777663 223333444444 233345554433
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCEEEE--eccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHh
Q 006203 294 AENLSWEVFRDTLIEQAEQGVDYFTI--HAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICN 371 (657)
Q Consensus 294 ~~~lt~e~~~d~ieeQAeqGVDf~TI--HaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k 371 (657)
...+. .+.|+||+-+ |.|-+ |.
T Consensus 278 -------~a~~l----~~aGad~i~vg~g~G~~-------------------------~~-------------------- 301 (450)
T TIGR01302 278 -------QAKAL----IDAGADGLRVGIGPGSI-------------------------CT-------------------- 301 (450)
T ss_pred -------HHHHH----HHhCCCEEEECCCCCcC-------------------------Cc--------------------
Confidence 33333 4579999864 33322 00
Q ss_pred HhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCc
Q 006203 372 QYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGP 451 (657)
Q Consensus 372 ~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGP 451 (657)
| .+.+.--..|+. .+-++.+.|.+.||.|+-+|-=+- --+..|-|.-||-+.++|=
T Consensus 302 ----t----------~~~~~~g~p~~~---~i~~~~~~~~~~~vpviadGGi~~-------~~di~kAla~GA~~V~~G~ 357 (450)
T TIGR01302 302 ----T----------RIVAGVGVPQIT---AVYDVAEYAAQSGIPVIADGGIRY-------SGDIVKALAAGADAVMLGS 357 (450)
T ss_pred ----c----------ceecCCCccHHH---HHHHHHHHHhhcCCeEEEeCCCCC-------HHHHHHHHHcCCCEEEECc
Confidence 0 000111122443 445556667788999999984333 3445667778999999998
Q ss_pred cc--cccCCC
Q 006203 452 LT--TDIAPG 459 (657)
Q Consensus 452 Lv--TDIApG 459 (657)
+. ||-+||
T Consensus 358 ~~a~~~e~pg 367 (450)
T TIGR01302 358 LLAGTTESPG 367 (450)
T ss_pred hhhcCCcCCC
Confidence 76 566776
No 86
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=63.91 E-value=37 Score=38.84 Aligned_cols=185 Identities=23% Similarity=0.299 Sum_probs=112.8
Q ss_pred HHHHcCCcCch---hhhH---HHHHHHHhHhceeEe---cc---CCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCe
Q 006203 349 WCLAYHKENFA---YEHW---DEILDICNQYDVALS---IG---DGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQ 416 (657)
Q Consensus 349 Wml~h~~ENpl---Y~~F---D~ileI~k~YDVtlS---LG---DGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQ 416 (657)
||+-..|.=|| .++| |+||-.-.+..|.+- .| -.|=|=||.=| -|+-|- -.|.++||.
T Consensus 175 YnlPYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLtgtLvPPsisia---v~ilE~-------Lla~eqGVk 244 (480)
T TIGR01503 175 YNIPYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLTGTLVPPSISNA---IGIIEG-------LLAAEQGVK 244 (480)
T ss_pred eccccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCCCCccChHHHHH---HHHHHH-------HHHHHcCCe
Confidence 55555554444 2344 555555555588753 33 34445554322 233332 257899999
Q ss_pred EEeeC---CCCCCCCchHHHHHHHHHhcCC-CC------------cc-ccCccccccCCCchhHHHhHHHHHhhhcccce
Q 006203 417 VMNEG---PGHIPMHKIPENMQKQLEWCNE-AP------------FY-TLGPLTTDIAPGYDHITSAIGAANIGALGTAL 479 (657)
Q Consensus 417 VMIEG---PGHVPl~~I~~Nv~lqk~lC~~-AP------------fY-vLGPLvTDIApGYDHITsAIGaA~aa~~Gadf 479 (657)
-+-=| -||+ .|=-+-+..-+++|++ .| || -.|+.++|-+-.|-=|+ -|+++|+..||+=
T Consensus 245 sisvgy~Q~Gn~--~QDiaai~aL~~l~~eYl~~~g~~Dv~i~tV~hqwMG~FP~d~~~A~~lis--~~a~~A~l~gA~K 320 (480)
T TIGR01503 245 NITVGYGQVGNL--TQDIAALRALEEQTNEYLKAYGYNDVFVTTVFHQWMGGFPEDESKAFGVIS--TATTIAALSGATK 320 (480)
T ss_pred EEEeccccCCCh--HHHHHHHHHHHHHHHHHHHhCCCCceEEEEEeeeccCCCCCChhhhhhHHH--HHHHHHHHcCCCE
Confidence 88777 3553 2222334444444432 22 22 25999999998886664 6899999999999
Q ss_pred eeecCchhhcCCCChhHHHHHHHHHHHHHhHhhhhcCCcchh----hHHHHHHHHHhhcChHHHHhhcCChHHHHh
Q 006203 480 LCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPLAQ----TWDDALSKARFEFRWMDQFALSLDPMTAMS 551 (657)
Q Consensus 480 LCYVTPaEHLgLP~~eDVkeGViA~kIAAHaaDlaKg~p~A~----~rD~~mSkAR~~~dWe~Qf~LalDPe~Ar~ 551 (657)
+=-=||.|-+|.|+.+.=..|+-++|-+. ++.++.+... +...++=++-..-=-++-|++. |++-++.
T Consensus 321 vIvKT~~EA~gIPt~eaN~~~l~~tk~~~---~~l~~q~~~~~~~~~~E~~~i~~Ev~~Ild~Vle~g-~gDl~~g 392 (480)
T TIGR01503 321 VIVKSPHEAIGIPTAEANAAGLKATKQAL---NMLNEQKIPMSKEVETEMALIKAETRCILDKVFELG-DGDLARG 392 (480)
T ss_pred EEecCHHHHcCCCCHHHHHHHHHHHHHHH---HHhccCCCCCchhhhHHHHHHHHHHHHHHHHHHhcC-CCcHHHH
Confidence 99999999999999999999998888775 7766633221 2222222222222245667776 5555543
No 87
>PRK08323 phenylhydantoinase; Validated
Probab=63.75 E-value=2e+02 Score=31.05 Aligned_cols=67 Identities=21% Similarity=0.215 Sum_probs=36.0
Q ss_pred HHHHHhCCCEeeecCCCCCh---HH----HHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCE
Q 006203 244 QWATMWGADTVMDLSTGRHI---HE----TREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDY 316 (657)
Q Consensus 244 ~~A~~~GADtvMDLSTGgdi---~~----~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGVDf 316 (657)
+.|++.|.-|++|.....+. .+ .++....++.+-+|. +- .+.. +.++.++.+++..+.|++.
T Consensus 76 ~~a~~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~-------~~~~-~~~~~~~~~~~~~~~g~~~ 144 (459)
T PRK08323 76 RAAACGGTTTIIDFALQPKGQSLREALEAWHGKAAGKAVIDYGF---HM-------IITD-WNEVVLDEMPELVEEGITS 144 (459)
T ss_pred HHHHhCCCCEEEeCcCCCCCCChHHHHHHHHHHhccCceEEEEE---EE-------EecC-CcHHHHHHHHHHHHcCCCE
Confidence 57789999999997654332 22 222222223222221 10 0111 1234566777777889887
Q ss_pred EEEec
Q 006203 317 FTIHA 321 (657)
Q Consensus 317 ~TIHa 321 (657)
+.++.
T Consensus 145 ik~~~ 149 (459)
T PRK08323 145 FKLFM 149 (459)
T ss_pred EEEEE
Confidence 77764
No 88
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=63.10 E-value=22 Score=36.07 Aligned_cols=117 Identities=20% Similarity=0.258 Sum_probs=79.5
Q ss_pred ceeEeeccccCCCCCChHHHHHHHHHHHHhCCCE---eeecC--CCCChHHHHHHHHhcCCCccccchhhhHHHHhcCcc
Q 006203 220 LVKVNANIGNSAVASSIEEEVYKVQWATMWGADT---VMDLS--TGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIA 294 (657)
Q Consensus 220 ~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADt---vMDLS--TGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~ 294 (657)
.|||..=||=.......+.-+.-++.|++.|||- ||+++ ..++.+.+++.|-+-...- +.+|+.=-++.
T Consensus 53 ~v~v~tVigFP~G~~~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~-~g~~lKvIlE~----- 126 (211)
T TIGR00126 53 EVRICTVVGFPLGASTTDVKLYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEAC-AGVLLKVIIET----- 126 (211)
T ss_pred CCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHc-CCCeEEEEEec-----
Confidence 5788888887777888888888899999999976 46665 3578888888776433211 12232111111
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEec-----ccccccccc----ccCcccCcccccc
Q 006203 295 ENLSWEVFRDTLIEQAEQGVDYFTIHA-----GVLLRYIPL----TAKRMTGIVSRGG 343 (657)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDf~TIHa-----Gv~~~~v~~----~~~RvtgIVSRGG 343 (657)
-.|+.+++....+--++.|+||+=.=. |.+.+.+.. ..+| .+|.-.||
T Consensus 127 ~~L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~~~-v~IKaaGG 183 (211)
T TIGR00126 127 GLLTDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVGDT-IGVKASGG 183 (211)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhccC-CeEEEeCC
Confidence 237889999999999999999996653 344454442 2233 57887777
No 89
>PLN02334 ribulose-phosphate 3-epimerase
Probab=63.03 E-value=22 Score=35.47 Aligned_cols=78 Identities=18% Similarity=0.189 Sum_probs=47.8
Q ss_pred CCCCCChHHHHHHHHHHHHhCCCE----eeecCCCCChH---HHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHH
Q 006203 230 SAVASSIEEEVYKVQWATMWGADT----VMDLSTGRHIH---ETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVF 302 (657)
Q Consensus 230 S~~~~~ie~EveKl~~A~~~GADt----vMDLSTGgdi~---~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~ 302 (657)
|-.+.+...-.+.++.++++|+|. +||.+.-.++. ++=++|-+.+..+++ |++. + .+++++
T Consensus 13 s~~~~~~~~l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~~~~~~~-vhlm---------v--~~p~d~ 80 (229)
T PLN02334 13 SILSADFANLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKHTDAPLD-CHLM---------V--TNPEDY 80 (229)
T ss_pred ehhhcCHHHHHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhcCCCcEE-EEec---------c--CCHHHH
Confidence 333345445556677888999998 57776655555 455555555555542 3321 1 123444
Q ss_pred HHHHHHHHhcCCCEEEEecc
Q 006203 303 RDTLIEQAEQGVDYFTIHAG 322 (657)
Q Consensus 303 ~d~ieeQAeqGVDf~TIHaG 322 (657)
. ..-.+-|.|++|+|.|
T Consensus 81 ~---~~~~~~gad~v~vH~~ 97 (229)
T PLN02334 81 V---PDFAKAGASIFTFHIE 97 (229)
T ss_pred H---HHHHHcCCCEEEEeec
Confidence 4 4447889999999999
No 90
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=61.65 E-value=60 Score=31.87 Aligned_cols=68 Identities=10% Similarity=0.090 Sum_probs=50.5
Q ss_pred hHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCch
Q 006203 362 HWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKI 430 (657)
Q Consensus 362 ~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I 430 (657)
+.+++.+++++|++.++.-..+... ..+..+...-+-+..+-+..+.|.+.|+.++|--+|.++-+..
T Consensus 46 ~~~~l~~~l~~~gl~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~ 113 (274)
T COG1082 46 ELAELKELLADYGLEITSLAPFSNN-LLSPDEEEREEALEELKRAIELAKELGAKVVVVHPGLGAGADD 113 (274)
T ss_pred hHHHHHHHHHHcCcEEEeecccCCC-cCCCchhhHHHHHHHHHHHHHHHHHcCCCeEEeecccCCcCCC
Confidence 3799999999999999998888876 4444444332334444448888999999999988887766644
No 91
>PRK12677 xylose isomerase; Provisional
Probab=61.43 E-value=26 Score=38.35 Aligned_cols=82 Identities=18% Similarity=0.199 Sum_probs=54.5
Q ss_pred hhhhHHHHHHHHhHhcee-EeccCCCCCCCccC-CCcHHHHHHH--HHHHHHHHHHHhcC--CeEEeeC-C----CCCCC
Q 006203 359 AYEHWDEILDICNQYDVA-LSIGDGLRPGSIYD-ANDTAQFAEL--LTQGELTRRAWDKD--VQVMNEG-P----GHIPM 427 (657)
Q Consensus 359 lY~~FD~ileI~k~YDVt-lSLGDGLRPG~i~D-A~D~AQ~~EL--~~LGEL~krA~e~g--VQVMIEG-P----GHVPl 427 (657)
-.+++-+-+|++++.++. +.+=-| |.|.-.+ ..|..+..+. .-|.+|.+.|.++| |++.||= | +++-+
T Consensus 112 Ai~~~~r~IdlA~eLGa~~Vvv~~G-~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laIEpkp~ep~~~~~l 190 (384)
T PRK12677 112 ALRKVLRNIDLAAELGAKTYVMWGG-REGAEYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFALEPKPNEPRGDILL 190 (384)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeeC-CCCccCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCCCCCCCeee
Confidence 477789999999999863 343323 5555332 2343333333 45789999999955 9999996 2 24566
Q ss_pred CchHHHHHHHHHhc
Q 006203 428 HKIPENMQKQLEWC 441 (657)
Q Consensus 428 ~~I~~Nv~lqk~lC 441 (657)
+.+..-..+.+++=
T Consensus 191 ~t~~~al~li~~lg 204 (384)
T PRK12677 191 PTVGHALAFIATLE 204 (384)
T ss_pred CCHHHHHHHHHHhC
Confidence 77777777777653
No 92
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=61.16 E-value=28 Score=37.01 Aligned_cols=135 Identities=18% Similarity=0.218 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEec
Q 006203 300 EVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSI 379 (657)
Q Consensus 300 e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSL 379 (657)
+++-.++++-++.|+|.+..|-|+.+..-+....++-=||-..++ +|=.+..||. .+..+.
T Consensus 43 ~d~e~~v~~v~~~g~dav~~~~G~~~~~~~~y~~dvplivkl~~~-----------t~l~~~~~~~--------~~~~~v 103 (265)
T COG1830 43 EDPENIVAKVAEAGADAVAMTPGIARSVHRGYAHDVPLIVKLNGS-----------TSLSPDPNDQ--------VLVATV 103 (265)
T ss_pred cCHHHHHHHHHhcCCCEEEecHhHHhhcCccccCCcCEEEEeccc-----------cccCCCcccc--------eeeeeH
Confidence 456678888899999999999999998888777788778877776 3333333333 233344
Q ss_pred cCCCCCCCccCC-----CcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCcccc
Q 006203 380 GDGLRPGSIYDA-----NDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTT 454 (657)
Q Consensus 380 GDGLRPG~i~DA-----~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvT 454 (657)
=|.+|-|..+=+ .-+-.-+.|..++++.++|.++|.-+|++ -|.-||-+.
T Consensus 104 e~ai~lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~-------------------------~YpRg~~~~ 158 (265)
T COG1830 104 EDAIRLGADAVGATVYVGSETEREMIENISQVVEDAHELGMPLVAW-------------------------AYPRGPAIK 158 (265)
T ss_pred HHHHhCCCcEEEEEEecCCcchHHHHHHHHHHHHHHHHcCCceEEE-------------------------EeccCCccc
Confidence 444444432210 00111456778899999999999999985 366677665
Q ss_pred ccCCCchhHHHhHHH--HHhhhcccceee
Q 006203 455 DIAPGYDHITSAIGA--ANIGALGTALLC 481 (657)
Q Consensus 455 DIApGYDHITsAIGa--A~aa~~GadfLC 481 (657)
|= |++..-.+|= =+++-.|||++=
T Consensus 159 ~~---~~~d~~~v~~aaRlaaelGADIiK 184 (265)
T COG1830 159 DE---YHRDADLVGYAARLAAELGADIIK 184 (265)
T ss_pred cc---ccccHHHHHHHHHHHHHhcCCeEe
Confidence 54 8888888773 367778888873
No 93
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=61.02 E-value=46 Score=33.36 Aligned_cols=81 Identities=10% Similarity=-0.020 Sum_probs=54.0
Q ss_pred hhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHH-HHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHH
Q 006203 360 YEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAE-LLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQL 438 (657)
Q Consensus 360 Y~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~E-L~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk 438 (657)
.+.|.+.++.|++.++..=.=.|.+++. +..+...+.. ...|.+|.++|.++||.+.+|-=..-.+.....-+++.+
T Consensus 98 ~~~~~~~i~~a~~lG~~~i~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~~~~~~~~~~~~~ll~ 175 (283)
T PRK13209 98 LEIMRKAIQLAQDLGIRVIQLAGYDVYY--EQANNETRRRFIDGLKESVELASRASVTLAFEIMDTPFMNSISKALGYAH 175 (283)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccccc--cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeecCCcccCCHHHHHHHHH
Confidence 5679999999999997653222333221 1122323222 236788999999999999999744446667777788877
Q ss_pred HhcC
Q 006203 439 EWCN 442 (657)
Q Consensus 439 ~lC~ 442 (657)
++.+
T Consensus 176 ~v~~ 179 (283)
T PRK13209 176 YLNS 179 (283)
T ss_pred HhCC
Confidence 7644
No 94
>TIGR03586 PseI pseudaminic acid synthase.
Probab=60.64 E-value=1.2e+02 Score=32.86 Aligned_cols=126 Identities=13% Similarity=0.138 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEecccccccccc-ccCcccCccccccHH--HHHHHHHcCCcCchhhhHHHHHHHHhHhc
Q 006203 298 SWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPL-TAKRMTGIVSRGGSI--HAKWCLAYHKENFAYEHWDEILDICNQYD 374 (657)
Q Consensus 298 t~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~-~~~RvtgIVSRGGSi--~a~Wml~h~~ENplY~~FD~ileI~k~YD 374 (657)
+.|..++.|..-++.|.|.+-+.. .+.+.+-. ...+ ...++++.. ...|=+...-|-+ ++.|-+|.+.|++++
T Consensus 15 ~~~~A~~lI~~A~~aGAdavKFQ~-~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~el~-~e~~~~L~~~~~~~G 90 (327)
T TIGR03586 15 SLERALAMIEAAKAAGADAIKLQT-YTPDTITLDSDRP--EFIIKGGLWDGRTLYDLYQEAHTP-WEWHKELFERAKELG 90 (327)
T ss_pred hHHHHHHHHHHHHHhCCCEEEeee-ccHHHhhcccccc--ccccccCCcCCccHHHHHHHhhCC-HHHHHHHHHHHHHhC
Confidence 467888999999999999766654 22222211 1111 122233211 1111111123433 577788999999999
Q ss_pred eeEeccCCCCCCCccCCCcHHHHHHHHHH--------------HHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHH
Q 006203 375 VALSIGDGLRPGSIYDANDTAQFAELLTQ--------------GELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQL 438 (657)
Q Consensus 375 VtlSLGDGLRPG~i~DA~D~AQ~~EL~~L--------------GEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk 438 (657)
+.+ +...-|..++.+|..+ -.|.+..-+.|.-|++-=.+ --+++|..-+..-+
T Consensus 91 i~~----------~stpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~-~t~~Ei~~Av~~i~ 157 (327)
T TIGR03586 91 LTI----------FSSPFDETAVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGI-ATLEEIQEAVEACR 157 (327)
T ss_pred CcE----------EEccCCHHHHHHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCC-CCHHHHHHHHHHHH
Confidence 977 4567778888888777 67889999999999998766 58888888876654
No 95
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=60.50 E-value=2.2e+02 Score=29.75 Aligned_cols=175 Identities=16% Similarity=0.125 Sum_probs=97.3
Q ss_pred ChHHHHHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCC
Q 006203 235 SIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGV 314 (657)
Q Consensus 235 ~ie~EveKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGV 314 (657)
+.+-|..-++.|.++|+.-+.---++..+.++|+. .+-|+ -+-+|- ..+.+.+.+.+++-.+.|+
T Consensus 79 ~~~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~~~----~~~~~-~~ql~~----------~~~~~~~~~~i~~~~~~g~ 143 (299)
T cd02809 79 HPDGELATARAAAAAGIPFTLSTVSTTSLEEVAAA----APGPR-WFQLYV----------PRDREITEDLLRRAEAAGY 143 (299)
T ss_pred CchHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHh----cCCCe-EEEEee----------cCCHHHHHHHHHHHHHcCC
Confidence 45566777888899998655433234456666644 22111 122221 1245777777777677899
Q ss_pred CEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcH
Q 006203 315 DYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDT 394 (657)
Q Consensus 315 Df~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~ 394 (657)
|.+-+|.+.... ..| ..++.|-+|.++.++.+++..-
T Consensus 144 ~~i~l~~~~p~~-----~~~--------------------------~~~~~i~~l~~~~~~pvivK~v------------ 180 (299)
T cd02809 144 KALVLTVDTPVL-----GRR--------------------------LTWDDLAWLRSQWKGPLILKGI------------ 180 (299)
T ss_pred CEEEEecCCCCC-----CCC--------------------------CCHHHHHHHHHhcCCCEEEeec------------
Confidence 999999986531 122 2446666677777888887631
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEe-eC-CCCCCC---CchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHH
Q 006203 395 AQFAELLTQGELTRRAWDKDVQVMN-EG-PGHIPM---HKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGA 469 (657)
Q Consensus 395 AQ~~EL~~LGEL~krA~e~gVQVMI-EG-PGHVPl---~~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGYDHITsAIGa 469 (657)
.-.+.+++|.++||..++ .| .||..- ..+..--+..+.+..+-|++.-|= |.-|. ++.-
T Consensus 181 -------~s~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GG----I~~~~-d~~k---- 244 (299)
T cd02809 181 -------LTPEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGG----IRRGT-DVLK---- 244 (299)
T ss_pred -------CCHHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCC----CCCHH-HHHH----
Confidence 113558899999998764 33 245321 112221222222222456555443 33332 2222
Q ss_pred HHhhhcccceeeecCc
Q 006203 470 ANIGALGTALLCYVTP 485 (657)
Q Consensus 470 A~aa~~GadfLCYVTP 485 (657)
+-..|||....-||
T Consensus 245 --al~lGAd~V~ig~~ 258 (299)
T cd02809 245 --ALALGADAVLIGRP 258 (299)
T ss_pred --HHHcCCCEEEEcHH
Confidence 22479998887663
No 96
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=60.13 E-value=1.9e+02 Score=28.88 Aligned_cols=114 Identities=10% Similarity=0.103 Sum_probs=72.8
Q ss_pred HHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccC
Q 006203 302 FRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGD 381 (657)
Q Consensus 302 ~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSLGD 381 (657)
+-+.|++.++.|+|.+-++++--+..... ..-.+..+++-+.+++|+|.+|.--
T Consensus 12 ~~~~~~~~~~~G~~~vel~~~~~~~~~~~--------------------------~~~~~~~~~l~~~~~~~gl~ls~h~ 65 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLFLGNPRSWKGV--------------------------RLSEETAEKFKEALKENNIDVSVHA 65 (273)
T ss_pred HhHHHHHHHHcCCCEEEEECCCCCCCCCC--------------------------CCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 44778888999999999977643322111 1224568889999999999998621
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchH----HHHHHHHHhcC
Q 006203 382 GLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIP----ENMQKQLEWCN 442 (657)
Q Consensus 382 GLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~----~Nv~lqk~lC~ 442 (657)
--...+++...+..=..+..+-+..+.|.+.|+.+++==||..+-..-+ ..++..+++|.
T Consensus 66 -p~~~nl~s~d~~~r~~~~~~l~~~i~~A~~lGa~~vv~h~g~~~~~~~e~~~~~~~~~l~~l~~ 129 (273)
T smart00518 66 -PYLINLASPDKEKVEKSIERLIDEIKRCEELGIKALVFHPGSYLKQSKEEALNRIIESLNEVID 129 (273)
T ss_pred -CceecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHHHHh
Confidence 1123455443333334467777888888899998887667766543333 33335555665
No 97
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=59.32 E-value=29 Score=34.27 Aligned_cols=162 Identities=20% Similarity=0.234 Sum_probs=93.6
Q ss_pred CCChHHHHHHHHHHHHhCCCEe---eecCCCCChHHHHHHH---HhcCCCccccchhhhHHHHh--cCccCCCCHHHHHH
Q 006203 233 ASSIEEEVYKVQWATMWGADTV---MDLSTGRHIHETREWI---LRNSAVPVGTVPIYQALEKV--DGIAENLSWEVFRD 304 (657)
Q Consensus 233 ~~~ie~EveKl~~A~~~GADtv---MDLSTGgdi~~~R~~I---l~nspvPVGTVPIYqA~~k~--~g~~~~lt~e~~~d 304 (657)
.+++++-++.++.+...|||.| +|+....+...+.+.+ .++.++| +-=.+... ||. -.++.+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~l~~lr~~~~~p-----iI~T~R~~~eGG~-~~~~~~~~~~ 79 (224)
T PF01487_consen 6 GSTLEELLAELEEAESSGADAVELRLDYLENDSAEDISEQLAELRRSLDLP-----IIFTVRTKEEGGR-FQGSEEEYLE 79 (224)
T ss_dssp -SSHHHHHHHHHHHHHTTTSEEEEEGGGSTTTSHHHHHHHHHHHHHHCTSE-----EEEE--BGGGTSS-BSS-HHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEeccccccChHHHHHHHHHHHHhCCCC-----EEEEecccccCCC-CcCCHHHHHH
Confidence 4566777777787777799998 8998866665555544 3344444 33333322 555 4899999999
Q ss_pred HHHHHHhcCCCEEEEeccccccccc----cccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEecc
Q 006203 305 TLIEQAEQGVDYFTIHAGVLLRYIP----LTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIG 380 (657)
Q Consensus 305 ~ieeQAeqGVDf~TIHaGv~~~~v~----~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSLG 380 (657)
.++.-++.|+||+.|=.-...+.+. ...++.-=|+|. |+-...|-.+...++++-+++++.
T Consensus 80 ll~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~~~~~iI~S~----------H~f~~tp~~~~l~~~~~~~~~~ga----- 144 (224)
T PF01487_consen 80 LLERAIRLGPDYIDIELDLFPDDLKSRLAARKGGTKIILSY----------HDFEKTPSWEELIELLEEMQELGA----- 144 (224)
T ss_dssp HHHHHHHHTSSEEEEEGGCCHHHHHHHHHHHHTTSEEEEEE----------EESS---THHHHHHHHHHHHHTT------
T ss_pred HHHHHHHcCCCEEEEEcccchhHHHHHHHHhhCCCeEEEEe----------ccCCCCCCHHHHHHHHHHHHhcCC-----
Confidence 9999999999999997764444332 122333335553 345777777777777777776441
Q ss_pred CCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhc-CCeEEee
Q 006203 381 DGLRPGSIYDANDTAQFAELLTQGELTRRAWDK-DVQVMNE 420 (657)
Q Consensus 381 DGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~-gVQVMIE 420 (657)
|-.+-=+. +++.. ....|-++++++.+. +..++.=
T Consensus 145 divKia~~--~~~~~---D~~~l~~~~~~~~~~~~~p~i~~ 180 (224)
T PF01487_consen 145 DIVKIAVM--ANSPE---DVLRLLRFTKEFREEPDIPVIAI 180 (224)
T ss_dssp SEEEEEEE---SSHH---HHHHHHHHHHHHHHHTSSEEEEE
T ss_pred CeEEEEec--cCCHH---HHHHHHHHHHHHhhccCCcEEEE
Confidence 44433222 23333 333444555555543 5555443
No 98
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=59.11 E-value=58 Score=34.45 Aligned_cols=85 Identities=16% Similarity=0.176 Sum_probs=43.6
Q ss_pred EeeccccCCCCCChHHHHHHHHHHHHhCCCEee-ecCC--------CCChHH----HHHHHHhcCCCccccchhhhHHHH
Q 006203 223 VNANIGNSAVASSIEEEVYKVQWATMWGADTVM-DLST--------GRHIHE----TREWILRNSAVPVGTVPIYQALEK 289 (657)
Q Consensus 223 VNANIGtS~~~~~ie~EveKl~~A~~~GADtvM-DLST--------Ggdi~~----~R~~Il~nspvPVGTVPIYqA~~k 289 (657)
|-+||+- .+.++-++=++.+.++|||.|. .+|. |.+..+ +=++|-+++.+||. .|
T Consensus 104 vi~sI~g----~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~--------vK 171 (334)
T PRK07565 104 VIASLNG----SSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVA--------VK 171 (334)
T ss_pred EEEEecc----CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEE--------EE
Confidence 3446633 2345545666677788999883 2332 333322 22444444444432 12
Q ss_pred hcCccCCCCHHHHHHHHHHHHhcCCCEEEEecccc
Q 006203 290 VDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVL 324 (657)
Q Consensus 290 ~~g~~~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~ 324 (657)
... + ++++.+....-.+.|||++++|-.+.
T Consensus 172 l~p---~--~~~~~~~a~~l~~~G~dgI~~~n~~~ 201 (334)
T PRK07565 172 LSP---Y--FSNLANMAKRLDAAGADGLVLFNRFY 201 (334)
T ss_pred eCC---C--chhHHHHHHHHHHcCCCeEEEECCcC
Confidence 111 1 12333444443467999999997754
No 99
>PRK07094 biotin synthase; Provisional
Probab=59.09 E-value=1.4e+02 Score=31.01 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEeccc
Q 006203 296 NLSWEVFRDTLIEQAEQGVDYFTIHAGV 323 (657)
Q Consensus 296 ~lt~e~~~d~ieeQAeqGVDf~TIHaGv 323 (657)
.++.|++.+.+++..+.||..+.+..|-
T Consensus 69 ~ls~eei~~~~~~~~~~g~~~i~l~gG~ 96 (323)
T PRK07094 69 RLSPEEILECAKKAYELGYRTIVLQSGE 96 (323)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCC
Confidence 4799999999999899999999998774
No 100
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=59.00 E-value=4.8 Score=44.73 Aligned_cols=154 Identities=16% Similarity=0.179 Sum_probs=90.1
Q ss_pred HHHHHHhCCCEeeecCCC-----------CChHHHHHHHHhc--CCCcc-ccchhhh-HHHHhcCccCCCCHHHHHHHHH
Q 006203 243 VQWATMWGADTVMDLSTG-----------RHIHETREWILRN--SAVPV-GTVPIYQ-ALEKVDGIAENLSWEVFRDTLI 307 (657)
Q Consensus 243 l~~A~~~GADtvMDLSTG-----------gdi~~~R~~Il~n--spvPV-GTVPIYq-A~~k~~g~~~~lt~e~~~d~ie 307 (657)
+..|...||+|++=.+.. .++.++|+.+-+. ...|+ ---| |- -+.--+..+-+.+.+.|.+.|+
T Consensus 147 ~~~a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~Hap-YlINLASpd~e~rekSv~~~~~eL~ 225 (413)
T PTZ00372 147 PINAYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGS-YLINLANPDKEKREKSYDAFLDDLQ 225 (413)
T ss_pred HHHHHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecC-ceecCCCCCHHHHHHHHHHHHHHHH
Confidence 478999999999854332 3456666666544 11111 1223 22 0111112223456788999999
Q ss_pred HHHhcCCCEEEEecccccccc------ccccCcccCccccccHHHHHHHHHc--CCcCchhhhHHHHHHHHhHh------
Q 006203 308 EQAEQGVDYFTIHAGVLLRYI------PLTAKRMTGIVSRGGSIHAKWCLAY--HKENFAYEHWDEILDICNQY------ 373 (657)
Q Consensus 308 eQAeqGVDf~TIHaGv~~~~v------~~~~~RvtgIVSRGGSi~a~Wml~h--~~ENplY~~FD~ileI~k~Y------ 373 (657)
.-.+-|++++++|.|-....- .+...-+--+.++... ...++.| ++.|.+...|++|.+|+..-
T Consensus 226 rA~~LGa~~VV~HPGs~~~~~~~ee~i~~i~e~L~~~la~~~g--V~IlLENmag~g~~lG~~~eeL~~Iid~v~~~~rl 303 (413)
T PTZ00372 226 RCEQLGIKLYNFHPGSTVGQCSKEEGIKNIADCINKAHEETKS--VIIVLENTAGQKNSVGSKFEDLRDIIALVEDKSRV 303 (413)
T ss_pred HHHHcCCCEEEECCCcCCCCCCHHHHHHHHHHHHHHHHhCcCC--CEEEEecCCCCCCcccCCHHHHHHHHHhcCCcCCe
Confidence 999999999999999753211 1111101111222222 2345554 45788888898888888753
Q ss_pred ceeEeccCCCCCCCccCCCcHHHHHHHH
Q 006203 374 DVALSIGDGLRPGSIYDANDTAQFAELL 401 (657)
Q Consensus 374 DVtlSLGDGLRPG~i~DA~D~AQ~~EL~ 401 (657)
.|+|=.+-.+-.| +|-.+...+.+++
T Consensus 304 GvCLDTcHafaAG--ydl~t~e~~~~~l 329 (413)
T PTZ00372 304 GVCLDTCHLFAAG--YDIRTKESFDKVM 329 (413)
T ss_pred EEEEEHHHHHhcC--CCCCcHHHHHHHH
Confidence 3777777776666 6666666666554
No 101
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=58.76 E-value=78 Score=34.62 Aligned_cols=116 Identities=15% Similarity=0.132 Sum_probs=79.3
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeE
Q 006203 298 SWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVAL 377 (657)
Q Consensus 298 t~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtl 377 (657)
+.+.++++-++-.+.||.|+-- |. ..+|--. .| -++.+ ++.+..|-++|+++++.+
T Consensus 130 ~~~~~~~~A~~lk~~g~~~~r~--~~-------~kpRtsp----~~----------f~g~~-~e~l~~L~~~~~~~Gl~~ 185 (360)
T PRK12595 130 SYEQVEAVAKALKAKGLKLLRG--GA-------FKPRTSP----YD----------FQGLG-VEGLKILKQVADEYGLAV 185 (360)
T ss_pred CHHHHHHHHHHHHHcCCcEEEc--cc-------cCCCCCC----cc----------ccCCC-HHHHHHHHHHHHHcCCCE
Confidence 4677777777777889887751 11 1133211 11 23333 588999999999999976
Q ss_pred eccCCCCCCCccCCCcHHHHHHHHH-------------HHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHH------
Q 006203 378 SIGDGLRPGSIYDANDTAQFAELLT-------------QGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQL------ 438 (657)
Q Consensus 378 SLGDGLRPG~i~DA~D~AQ~~EL~~-------------LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk------ 438 (657)
+.+..|..|+.++.. .-+|.+.+-+.|.-|++.=+=+.-+.+|..-++.-.
T Consensus 186 ----------~t~v~d~~~~~~l~~~vd~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~ 255 (360)
T PRK12595 186 ----------ISEIVNPADVEVALDYVDVIQIGARNMQNFELLKAAGRVNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQ 255 (360)
T ss_pred ----------EEeeCCHHHHHHHHHhCCeEEECcccccCHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCC
Confidence 456666666666633 457889999999999999887788888887776654
Q ss_pred -HhcC-CCCcc
Q 006203 439 -EWCN-EAPFY 447 (657)
Q Consensus 439 -~lC~-~APfY 447 (657)
-||| +--+|
T Consensus 256 i~L~erg~s~y 266 (360)
T PRK12595 256 IILCERGIRTY 266 (360)
T ss_pred EEEECCccCCC
Confidence 3676 54444
No 102
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=58.44 E-value=58 Score=32.50 Aligned_cols=78 Identities=10% Similarity=0.050 Sum_probs=50.7
Q ss_pred hhhHHHHHHHHhHhcee-EeccCCCCCCCccCCCcHHHHHHH-HHHHHHHHHHHhcCCeEEeeCCCC--C---CCCchHH
Q 006203 360 YEHWDEILDICNQYDVA-LSIGDGLRPGSIYDANDTAQFAEL-LTQGELTRRAWDKDVQVMNEGPGH--I---PMHKIPE 432 (657)
Q Consensus 360 Y~~FD~ileI~k~YDVt-lSLGDGLRPG~i~DA~D~AQ~~EL-~~LGEL~krA~e~gVQVMIEGPGH--V---Pl~~I~~ 432 (657)
-+++++.+++|++.++. +.+--|-.|+. -.++..+..+ ..|.+|.+.|.++||++.+|--+| . .++-.+.
T Consensus 84 ~~~~~~~i~~a~~lga~~i~~~~g~~~~~---~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~~~~~~~~~~ 160 (258)
T PRK09997 84 RDGVAAAIRYARALGNKKINCLVGKTPAG---FSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIPGFHLTGTRQ 160 (258)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCCCCccCCHHH
Confidence 47799999999999996 33333323322 2223223333 477999999999999999996444 2 3555555
Q ss_pred HHHHHHHh
Q 006203 433 NMQKQLEW 440 (657)
Q Consensus 433 Nv~lqk~l 440 (657)
-.++.+++
T Consensus 161 ~~~ll~~v 168 (258)
T PRK09997 161 ALKLIDDV 168 (258)
T ss_pred HHHHHHHh
Confidence 55655553
No 103
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=58.30 E-value=63 Score=34.83 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=37.5
Q ss_pred CcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHH----------HHHHHHHHhcCCeEEe
Q 006203 355 KENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQ----------GELTRRAWDKDVQVMN 419 (657)
Q Consensus 355 ~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~L----------GEL~krA~e~gVQVMI 419 (657)
+..+-++....+++++++|++.+ ..++......+.+...+ .|.++.+.+.|+.++.
T Consensus 208 ~~~~~~e~i~~~v~~A~~~g~~v---------~sH~~~~~~~i~~a~~~Gv~~~e~~~~~e~~~~~~~~g~~v~~ 273 (383)
T PRK15446 208 SARYAPPNRRAIAALARARGIPL---------ASHDDDTPEHVAEAHALGVAIAEFPTTLEAARAARALGMSVLM 273 (383)
T ss_pred HhhcCHHHHHHHHHHHHHCCCce---------eecCCCCHHHHHHHHHcCCceeeCCCcHHHHHHHHHCCCEEEe
Confidence 44566889999999999999776 34443223355555544 4566777777887764
No 104
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=58.13 E-value=1e+02 Score=35.39 Aligned_cols=127 Identities=13% Similarity=0.062 Sum_probs=78.9
Q ss_pred HHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEecc
Q 006203 243 VQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAG 322 (657)
Q Consensus 243 l~~A~~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGVDf~TIHaG 322 (657)
++.|+++|||-|.|+|-+ +++++-+ ++..+.+|+=-+|.. . +-..+.|.+.++.-.+.||+=+-+=.|
T Consensus 221 ~eaAL~aGAdiINsVs~~-~~d~~~~-l~a~~g~~vVlm~~~-~---------~~~~~~l~~~ie~a~~~Gi~~IIlDPg 288 (499)
T TIGR00284 221 LYEALKAGASGVIMPDVE-NAVELAS-EKKLPEDAFVVVPGN-Q---------PTNYEELAKAVKKLRTSGYSKVAADPS 288 (499)
T ss_pred HHHHHHcCCCEEEECCcc-chhHHHH-HHHHcCCeEEEEcCC-C---------CchHHHHHHHHHHHHHCCCCcEEEeCC
Confidence 567888899999999765 6776643 566666777666641 1 111255556666656669964445555
Q ss_pred ccccccccccCcccCccccccHHHHHHHHHcCCcCc-hhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHH
Q 006203 323 VLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENF-AYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELL 401 (657)
Q Consensus 323 v~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENp-lY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~ 401 (657)
+-. .|. +.+..+++-++-+++.+-+-+|= |.+..-.|+ .-+-
T Consensus 289 lg~------------------------------~~~~l~~sL~~l~~~r~~~~~Pil~Gv----SNvtel~da---Ds~g 331 (499)
T TIGR00284 289 LSP------------------------------PLLGLLESIIRFRRASRLLNVPLVFGA----ANVTELVDA---DSHG 331 (499)
T ss_pred CCc------------------------------chHHHHHHHHHHHHHHHhcCCcEEEee----ccccCCCcc---chhH
Confidence 420 122 67777888777667777666663 344333332 1223
Q ss_pred HHHHHHHHHHhcCCeEE
Q 006203 402 TQGELTRRAWDKDVQVM 418 (657)
Q Consensus 402 ~LGEL~krA~e~gVQVM 418 (657)
...-|+-.|-+.|+++.
T Consensus 332 ~naal~~~a~e~Ga~il 348 (499)
T TIGR00284 332 VNALLAAIALEAGASIL 348 (499)
T ss_pred HHHHHHHHHHHcCCCEE
Confidence 55667788999999864
No 105
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=57.84 E-value=52 Score=32.53 Aligned_cols=110 Identities=16% Similarity=0.185 Sum_probs=59.9
Q ss_pred HHHHHHHhCCCEeeecCCC--CChHHHHHHHHhcCC--CccccchhhhHHH----Hh--cCccCCCCHHHHHHHHHHHHh
Q 006203 242 KVQWATMWGADTVMDLSTG--RHIHETREWILRNSA--VPVGTVPIYQALE----KV--DGIAENLSWEVFRDTLIEQAE 311 (657)
Q Consensus 242 Kl~~A~~~GADtvMDLSTG--gdi~~~R~~Il~nsp--vPVGTVPIYqA~~----k~--~g~~~~lt~e~~~d~ieeQAe 311 (657)
.++.+..+|+|.|+ |.|. .|.+.+++. .+.-+ .-+-+|-++.-+. ++ .+- .+.+..+..+.+.+-.+
T Consensus 88 d~~~~~~~G~~~vi-lg~~~l~~~~~~~~~-~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~ 164 (232)
T TIGR03572 88 DAKKLLSLGADKVS-INTAALENPDLIEEA-ARRFGSQCVVVSIDVKKELDGSDYKVYSDNG-RRATGRDPVEWAREAEQ 164 (232)
T ss_pred HHHHHHHcCCCEEE-EChhHhcCHHHHHHH-HHHcCCceEEEEEEeccCCCCCcEEEEECCC-cccCCCCHHHHHHHHHH
Confidence 34445677999773 4443 444444444 34322 1233444443210 00 010 12233445677777789
Q ss_pred cCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCC
Q 006203 312 QGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLR 384 (657)
Q Consensus 312 qGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSLGDGLR 384 (657)
.|+|++++|. +++.|. .+.| +|+.+-+|++.-++.+-.+-|+|
T Consensus 165 ~G~d~i~i~~-----------------i~~~g~----------~~g~---~~~~~~~i~~~~~ipvia~GGi~ 207 (232)
T TIGR03572 165 LGAGEILLNS-----------------IDRDGT----------MKGY---DLELIKTVSDAVSIPVIALGGAG 207 (232)
T ss_pred cCCCEEEEeC-----------------CCccCC----------cCCC---CHHHHHHHHhhCCCCEEEECCCC
Confidence 9999999996 222222 3334 36666777777788888887775
No 106
>PRK01060 endonuclease IV; Provisional
Probab=56.97 E-value=18 Score=36.22 Aligned_cols=79 Identities=18% Similarity=0.189 Sum_probs=47.5
Q ss_pred HHHHHHhCCCEeeecCCC------------CChHHHHHHHHhcCCCccccc----hhhhHHHHhcCccCCCCHHHHHHHH
Q 006203 243 VQWATMWGADTVMDLSTG------------RHIHETREWILRNSAVPVGTV----PIYQALEKVDGIAENLSWEVFRDTL 306 (657)
Q Consensus 243 l~~A~~~GADtvMDLSTG------------gdi~~~R~~Il~nspvPVGTV----PIYqA~~k~~g~~~~lt~e~~~d~i 306 (657)
++++-+.|.|.| +|..+ .++.++|+.+ +...+.++.+ |.+--+...+....+-+.+.+.+.|
T Consensus 18 l~~~~~~G~d~v-El~~~~p~~~~~~~~~~~~~~~lk~~~-~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~~~i 95 (281)
T PRK01060 18 VAEAAEIGANAF-MIFTGNPQQWKRKPLEELNIEAFKAAC-EKYGISPEDILVHAPYLINLGNPNKEILEKSRDFLIQEI 95 (281)
T ss_pred HHHHHHcCCCEE-EEECCCCCCCcCCCCCHHHHHHHHHHH-HHcCCCCCceEEecceEecCCCCCHHHHHHHHHHHHHHH
Confidence 477889999998 24322 1355677654 4555554433 3221111001112234457788888
Q ss_pred HHHHhcCCCEEEEeccc
Q 006203 307 IEQAEQGVDYFTIHAGV 323 (657)
Q Consensus 307 eeQAeqGVDf~TIHaGv 323 (657)
+--.+-|+.++++|.|-
T Consensus 96 ~~A~~lga~~vv~h~G~ 112 (281)
T PRK01060 96 ERCAALGAKLLVFHPGS 112 (281)
T ss_pred HHHHHcCCCEEEEcCCc
Confidence 88889999999999984
No 107
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=56.22 E-value=12 Score=36.14 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=14.2
Q ss_pred HHHHHHHhcCCeEEee
Q 006203 405 ELTRRAWDKDVQVMNE 420 (657)
Q Consensus 405 EL~krA~e~gVQVMIE 420 (657)
||.+|+|+.||+||-=
T Consensus 108 eLk~rlr~~GIPvi~l 123 (136)
T COG1412 108 ELKRRLRENGIPVITL 123 (136)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 8999999999999853
No 108
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=55.88 E-value=2.7e+02 Score=29.37 Aligned_cols=139 Identities=8% Similarity=0.033 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccccc--cccccccC-------cccCc--cccccHHHHHHHHHcCC---cCch-hhh
Q 006203 298 SWEVFRDTLIEQAEQGVDYFTIHAGVLL--RYIPLTAK-------RMTGI--VSRGGSIHAKWCLAYHK---ENFA-YEH 362 (657)
Q Consensus 298 t~e~~~d~ieeQAeqGVDf~TIHaGv~~--~~v~~~~~-------RvtgI--VSRGGSi~a~Wml~h~~---ENpl-Y~~ 362 (657)
+.+++.+.+++..++|...|-|+.|... +.+..... |+-.- =|.--...++++...+- |=|+ .+.
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv~~~~d~~~v~~vr~~~~~~~l~vDaN~~~~~~~a~~~~~l~~~~~~~iEeP~~~~~ 211 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKITPQIMHQLVKLRRLRFPQIPLVIDANESYDLQDFPRLKELDRYQLLYIEEPFKIDD 211 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEeCCchhHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhCCCcEEECCCChhH
Confidence 5688899999999999999999876321 11111000 00000 11212334556655443 4455 357
Q ss_pred HHHHHHHHhHhceeEeccCCCC------CCCccCCCc-----HHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchH
Q 006203 363 WDEILDICNQYDVALSIGDGLR------PGSIYDAND-----TAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIP 431 (657)
Q Consensus 363 FD~ileI~k~YDVtlSLGDGLR------PG~i~DA~D-----~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~ 431 (657)
++.+-++.+..++-+.+|..+. .---..+.| ...+.-+...-+++..|.++|++||+- +|+ -.-|.
T Consensus 212 ~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~--~~~-es~i~ 288 (324)
T TIGR01928 212 LSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIETCREHGAKVWIG--GML-ETGIS 288 (324)
T ss_pred HHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEc--ceE-cccHH
Confidence 8889999999999999998652 110111222 222233444447788899999999975 333 33444
Q ss_pred HHHHHHHH
Q 006203 432 ENMQKQLE 439 (657)
Q Consensus 432 ~Nv~lqk~ 439 (657)
...-+|.-
T Consensus 289 ~aa~~hla 296 (324)
T TIGR01928 289 RAFNVALA 296 (324)
T ss_pred HHHHHHHH
Confidence 44444443
No 109
>PTZ00293 thymidine kinase; Provisional
Probab=55.50 E-value=26 Score=35.80 Aligned_cols=89 Identities=17% Similarity=0.136 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccccccccccccCcc-c-C-ccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhcee
Q 006203 300 EVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRM-T-G-IVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVA 376 (657)
Q Consensus 300 e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~Rv-t-g-IVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVt 376 (657)
..|+..+.+.-..|-..+.+-. ..+.|. . + ||||-|..+-+... +...++.+..+.|||.
T Consensus 19 teLLr~i~~y~~ag~kv~~~kp--------~~DtR~~~~~~I~Sh~g~~~~a~~v---------~~~~e~~~~~~~~dvI 81 (211)
T PTZ00293 19 TELMRLVKRFTYSEKKCVVIKY--------SKDTRYSDEQNISSHDKQMLKAIKV---------SKLKEVLETAKNYDVI 81 (211)
T ss_pred HHHHHHHHHHHHcCCceEEEEe--------cccccCCCCCcEEecCCCcceeEEc---------CCHHHHHHhccCCCEE
Confidence 4566677777777776665533 245565 1 2 89998865544222 2223334444778887
Q ss_pred EeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeC
Q 006203 377 LSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEG 421 (657)
Q Consensus 377 lSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEG 421 (657)
+ -|++||-+ .+-+|++.+...|+.|++=|
T Consensus 82 ~--------------IDEaQFf~--~i~~~~~~l~~~g~~VivaG 110 (211)
T PTZ00293 82 A--------------IDEGQFFP--DLVEFSEAAANLGKIVIVAA 110 (211)
T ss_pred E--------------EEchHhhH--hHHHHHHHHHHCCCeEEEEe
Confidence 5 59999964 57888999999999999988
No 110
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=54.66 E-value=1.5e+02 Score=32.57 Aligned_cols=158 Identities=15% Similarity=0.134 Sum_probs=86.6
Q ss_pred HHHHHHHHHhCCCEeeecC------CCCC-------hHHHHHHHHhcCCCccccchh--hh--HHHHhcCccCCCCH---
Q 006203 240 VYKVQWATMWGADTVMDLS------TGRH-------IHETREWILRNSAVPVGTVPI--YQ--ALEKVDGIAENLSW--- 299 (657)
Q Consensus 240 veKl~~A~~~GADtvMDLS------TGgd-------i~~~R~~Il~nspvPVGTVPI--Yq--A~~k~~g~~~~lt~--- 299 (657)
++.++.+-++|.|.|. +. -+.+ +.++|+. |+...+.|-.|-+ |. .+ + .|.+..-+.
T Consensus 35 ~e~i~~la~~GfdgVE-~~~~dl~P~~~~~~e~~~~~~~lk~~-L~~~GL~v~~v~~nl~~~~~~-~-~g~las~d~~vR 110 (382)
T TIGR02631 35 VEAVHKLAELGAYGVT-FHDDDLIPFGAPPQERDQIVRRFKKA-LDETGLKVPMVTTNLFSHPVF-K-DGGFTSNDRSVR 110 (382)
T ss_pred HHHHHHHHHhCCCEEE-ecccccCCCCCChhHHHHHHHHHHHH-HHHhCCeEEEeeccccCCccc-c-CCCCCCCCHHHH
Confidence 3566678899999995 43 2222 2345554 6666666443221 11 11 1 233444444
Q ss_pred ----HHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhH--h
Q 006203 300 ----EVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQ--Y 373 (657)
Q Consensus 300 ----e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~--Y 373 (657)
+.+.+.|+--++-|...|++|.|......+....+ .-.-+|+ -+.+.+|++.+++ |
T Consensus 111 ~~ai~~~kraId~A~eLGa~~v~v~~G~~g~~~~~~~d~---------~~a~~~~---------~e~L~~lae~A~~~G~ 172 (382)
T TIGR02631 111 RYALRKVLRNMDLGAELGAETYVVWGGREGAEYDGAKDV---------RAALDRM---------REALNLLAAYAEDQGY 172 (382)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEccCCCCCcCccccCH---------HHHHHHH---------HHHHHHHHHHHHhhCC
Confidence 45667777778899999999999543222211110 0012223 3788999999998 4
Q ss_pred ceeEeccC---CCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCC
Q 006203 374 DVALSIGD---GLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPM 427 (657)
Q Consensus 374 DVtlSLGD---GLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl 427 (657)
+|+|.|=- --|++.+ -++.+|..+++. .+.. ..-|.++++ .||+=|
T Consensus 173 GV~laLEp~p~~~~~~~l--l~T~~~al~li~---~v~~--pn~vgl~lD-vgH~~~ 221 (382)
T TIGR02631 173 GLRFALEPKPNEPRGDIL--LPTVGHALAFIE---TLER--PELFGLNPE-TGHEQM 221 (382)
T ss_pred CcEEEEccCCCCCCccee--cCCHHHHHHHHH---HcCC--ccceeEEEe-chhHhh
Confidence 89999943 3344444 344555555442 1110 111455554 488844
No 111
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=54.66 E-value=32 Score=37.21 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=27.2
Q ss_pred CcccCccccccHHHHHHHHHcCCcCchhhhHHHHHH
Q 006203 333 KRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILD 368 (657)
Q Consensus 333 ~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ile 368 (657)
-++.||+||+-.=..++-..++- |.|+.||++++
T Consensus 28 ~eLvaV~d~~~erA~~~A~~~gi--~~y~~~eell~ 61 (343)
T TIGR01761 28 FELAGILAQGSERSRALAHRLGV--PLYCEVEELPD 61 (343)
T ss_pred cEEEEEEcCCHHHHHHHHHHhCC--CccCCHHHHhc
Confidence 37999999998876667666664 59999999983
No 112
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=54.52 E-value=2.2e+02 Score=28.01 Aligned_cols=167 Identities=20% Similarity=0.159 Sum_probs=109.9
Q ss_pred hHHHHHH-HHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCC
Q 006203 236 IEEEVYK-VQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGV 314 (657)
Q Consensus 236 ie~EveK-l~~A~~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGV 314 (657)
-.+++++ ++.|.++|.|+|+-- -+-+...|+. ++++++-+.+|- +-..-..+.+.....+++-.++|+
T Consensus 15 t~~~i~~~~~~a~~~~~~av~v~--p~~v~~~~~~-l~~~~~~v~~~~--------~fp~g~~~~~~k~~eve~A~~~GA 83 (203)
T cd00959 15 TEEDIRKLCDEAKEYGFAAVCVN--PCFVPLAREA-LKGSGVKVCTVI--------GFPLGATTTEVKVAEAREAIADGA 83 (203)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEc--HHHHHHHHHH-cCCCCcEEEEEE--------ecCCCCCcHHHHHHHHHHHHHcCC
Confidence 4567776 567788999999933 2344445554 456677776661 112223566777788999999999
Q ss_pred CEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeE--eccCCCCCCCccCCC
Q 006203 315 DYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVAL--SIGDGLRPGSIYDAN 392 (657)
Q Consensus 315 Df~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtl--SLGDGLRPG~i~DA~ 392 (657)
|-+-++.-+. + +..+.++-.++..-++.+.|. ++.| .+..+.- +
T Consensus 84 devdvv~~~g------------------------~-~~~~~~~~~~~ei~~v~~~~~--g~~lkvI~e~~~l-------~ 129 (203)
T cd00959 84 DEIDMVINIG------------------------A-LKSGDYEAVYEEIAAVVEACG--GAPLKVILETGLL-------T 129 (203)
T ss_pred CEEEEeecHH------------------------H-HhCCCHHHHHHHHHHHHHhcC--CCeEEEEEecCCC-------C
Confidence 9998887541 1 222344556677777777775 5443 5565543 1
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcC-CCCccccCcccc
Q 006203 393 DTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCN-EAPFYTLGPLTT 454 (657)
Q Consensus 393 D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~-~APfYvLGPLvT 454 (657)
| ..+...++.|-|.|+-.+==+.|=.|-.-=.+++++.++.+. ..|+.+-|-.-|
T Consensus 130 ~-------~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~~~v~ik~aGGikt 185 (203)
T cd00959 130 D-------EEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVGGRVGVKAAGGIRT 185 (203)
T ss_pred H-------HHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCCCceEEEeCCCCC
Confidence 1 246667888999999988777777666655677788878775 467888876553
No 113
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=54.45 E-value=33 Score=36.35 Aligned_cols=161 Identities=15% Similarity=0.112 Sum_probs=86.2
Q ss_pred HHHHHHhCCCEeeecCCC----CChHHH---HHHHHhcCCC---ccccchhhh------HHHHh--cCc-------cCCC
Q 006203 243 VQWATMWGADTVMDLSTG----RHIHET---REWILRNSAV---PVGTVPIYQ------ALEKV--DGI-------AENL 297 (657)
Q Consensus 243 l~~A~~~GADtvMDLSTG----gdi~~~---R~~Il~nspv---PVGTVPIYq------A~~k~--~g~-------~~~l 297 (657)
.+.|..-|.-||+|.... .+...+ ++++-+++.+ +.|.+.... .+.+. .|. ..-+
T Consensus 38 s~aA~~GGvTtii~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~G~~~~k~~~~~~~ 117 (374)
T cd01317 38 AKAAAAGGFTTVVCMPNTNPVIDNPAVVELLKNRAKDVGIVRVLPIGALTKGLKGEELTEIGELLEAGAVGFSDDGKPIQ 117 (374)
T ss_pred HHHHHhCCCcEEEECCCCCCCCCCHHHHHHHHHHhccCCceeEEEEEEEeeCCCcccHHHHHHHHHCCcEEEEcCCcCCC
Confidence 467788889999998532 223333 3333333322 245543321 11111 110 0125
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHc-CCcCchhhhHHHHHHHHhHhcee
Q 006203 298 SWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAY-HKENFAYEHWDEILDICNQYDVA 376 (657)
Q Consensus 298 t~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h-~~ENplY~~FD~ileI~k~YDVt 376 (657)
+.+.++++++.-++.|. .+.+||- +.+.+. ++ +. +.|.+ ..|.-.+ ..++--.....++++++++|++.
T Consensus 118 ~~~~l~~~~~~~~~~g~-~v~~H~E-~~~~~~---~~---~~-~~g~~-~~~~~~~~~p~~~e~~~v~~~~~la~~~~~~ 187 (374)
T cd01317 118 DAELLRRALEYAAMLDL-PIIVHPE-DPSLAG---GG---VM-NEGKV-ASRLGLPGIPPEAETIMVARDLELAEATGAR 187 (374)
T ss_pred CHHHHHHHHHHHHhcCC-eEEEecC-Chhhhh---cc---Cc-cCChh-hHHhCCCCCCHHHHHHHHHHHHHHHHHhCCc
Confidence 77889999999999898 4669993 333322 11 11 22222 2221111 11112234667889999999988
Q ss_pred EeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCC-CCCCc
Q 006203 377 LSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGH-IPMHK 429 (657)
Q Consensus 377 lSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGH-VPl~~ 429 (657)
+-+. =.+.+.-+ +++++|++.|+++-.|=.-| +=+++
T Consensus 188 i~i~---------h~ss~~~l-------~~i~~~~~~G~~~~~e~~~h~L~ld~ 225 (374)
T cd01317 188 VHFQ---------HLSTARSL-------ELIRKAKAKGLPVTAEVTPHHLLLDD 225 (374)
T ss_pred EEEE---------eCCCHHHH-------HHHHHHHHCCCCEEEEecHHHHhcCH
Confidence 7542 11122111 66788889999998885444 44443
No 114
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=54.12 E-value=70 Score=33.62 Aligned_cols=148 Identities=16% Similarity=0.140 Sum_probs=78.7
Q ss_pred HHHHHHhCCCEeeecCCC----CChHHHHHHH---HhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCC
Q 006203 243 VQWATMWGADTVMDLSTG----RHIHETREWI---LRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVD 315 (657)
Q Consensus 243 l~~A~~~GADtvMDLSTG----gdi~~~R~~I---l~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGVD 315 (657)
.+.|..-|--||+|.-.. .+...++.++ -+++-+.+| +| +. ++.+.-++.|.+..+.||.
T Consensus 30 t~aA~~GG~Ttv~~mpn~~p~~~~~~~~~~~~~~a~~~~~~d~~---~~-------~~---~~~~~~~~el~~l~~~Gv~ 96 (337)
T cd01302 30 SRAAAAGGVTTVIDMPNTGPPPIDLPAIELKIKLAEESSYVDFS---FH-------AG---IGPGDVTDELKKLFDAGIN 96 (337)
T ss_pred HHHHHhCCCcEEEECCCCCCCCCcHHHHHHHHHHhCcCcEeeEE---EE-------Ee---ccCccCHHHHHHHHHcCCc
Confidence 467888899999997422 1223332222 223333333 11 01 1211123445555678988
Q ss_pred EEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHH
Q 006203 316 YFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTA 395 (657)
Q Consensus 316 f~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~A 395 (657)
-|-+|..... +. .+.+ .-..++......+...-|+.-|=.+++++++++++.+-+-=- +.+
T Consensus 97 g~K~f~~~~~-------~~-~~~~-~~~~l~~~~~~~~~~g~~v~~H~Er~~~la~~~g~~l~i~Hi---------ss~- 157 (337)
T cd01302 97 SLKVFMNYYF-------GE-LFDV-DDGTLMRTFLEIASRGGPVMVHAERAAQLAEEAGANVHIAHV---------SSG- 157 (337)
T ss_pred EEEEEEeccC-------CC-cccc-CHHHHHHHHHHHHhcCCeEEEeHHHHHHHHHHhCCcEEEEeC---------CCH-
Confidence 8888753210 00 0112 223444444444444556666666999999999987533111 011
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEee-CCCCCCCC
Q 006203 396 QFAELLTQGELTRRAWDKDVQVMNE-GPGHIPMH 428 (657)
Q Consensus 396 Q~~EL~~LGEL~krA~e~gVQVMIE-GPGHVPl~ 428 (657)
.--|+++.|++.|++|-.| -|-|.=++
T Consensus 158 ------~~le~i~~ak~~g~~vt~ev~ph~L~l~ 185 (337)
T cd01302 158 ------EALELIKFAKNKGVKVTCEVCPHHLFLD 185 (337)
T ss_pred ------HHHHHHHHHHHCCCcEEEEcChhhheeC
Confidence 1126677889999999999 46655443
No 115
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=54.10 E-value=67 Score=36.53 Aligned_cols=92 Identities=21% Similarity=0.227 Sum_probs=61.0
Q ss_pred ceeEeeccccCCCCCChHHHHHHHHHHHHhCCCEe---eecCCCCChHHHHHHHHhcCCCccccchhhhHHHHh--cCcc
Q 006203 220 LVKVNANIGNSAVASSIEEEVYKVQWATMWGADTV---MDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKV--DGIA 294 (657)
Q Consensus 220 ~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADtv---MDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~--~g~~ 294 (657)
.+||.+.|- ..+.++-+.+++.+...|+|-| +|+....+..+.-..+++..++ ||-=.+... ||.
T Consensus 22 ~~~icv~i~----~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~~~~~~~~-----plI~T~R~~~eGG~- 91 (529)
T PLN02520 22 PTLICVPIM----ADSVDKMLIEMAKAKELGADLVEIRLDFLKNFNPREDLKTLIKQSPL-----PTLVTYRPKWEGGQ- 91 (529)
T ss_pred CCEEEEEeC----CCCHHHHHHHHHHhhhcCCCEEEEEeccccccCCHHHHHHHHhcCCC-----cEEEEeccHHHCCC-
Confidence 346655552 2235666677888888899999 9988764333333456665444 443333321 444
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEec
Q 006203 295 ENLSWEVFRDTLIEQAEQGVDYFTIHA 321 (657)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDf~TIHa 321 (657)
-..++++.++.++.-++.|+||+-|=-
T Consensus 92 ~~~~~~~~~~ll~~~~~~~~d~iDiEl 118 (529)
T PLN02520 92 YEGDENKRQDALRLAMELGADYVDVEL 118 (529)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEEEc
Confidence 578999999999998999999998853
No 116
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=53.64 E-value=2.5e+02 Score=28.32 Aligned_cols=78 Identities=21% Similarity=0.218 Sum_probs=48.5
Q ss_pred CChHHHHHHHHHHHHhCCCEeeecCCC---CChHHHHHHHHhcCCC----ccccchhhhHHHHhcCccCCCCHHHHHHHH
Q 006203 234 SSIEEEVYKVQWATMWGADTVMDLSTG---RHIHETREWILRNSAV----PVGTVPIYQALEKVDGIAENLSWEVFRDTL 306 (657)
Q Consensus 234 ~~ie~EveKl~~A~~~GADtvMDLSTG---gdi~~~R~~Il~nspv----PVGTVPIYqA~~k~~g~~~~lt~e~~~d~i 306 (657)
.+++.=++.++.+.+.|..||.|.++. .+...+++- .+.+++ .+|--|.+..- ......+.+.+.+.+
T Consensus 29 ~~~~~~~~~~~~~~~~Gvttiv~~~~~~~~~~~~~~~~~-~~~~g~~v~~~~G~hp~~~~~----~~~~~~~~~~l~~~~ 103 (293)
T cd00530 29 ADVEAAKEELKRFRAHGGRTIVDATPPGIGRDVEKLAEV-ARATGVNIVAATGFYKDAFYP----EWVRLRSVEELTDML 103 (293)
T ss_pred hhHHHHHHHHHHHHHcCCCeEEEcCCcccCcCHHHHHHH-HHHhCCcEEEecccCCCccCh----HHHhhCCHHHHHHHH
Confidence 356666677888999999999999973 466666544 444443 34544433100 001234556777777
Q ss_pred HHHHhcCCCE
Q 006203 307 IEQAEQGVDY 316 (657)
Q Consensus 307 eeQAeqGVDf 316 (657)
++...+|++-
T Consensus 104 ~~~l~~~~~~ 113 (293)
T cd00530 104 IREIEEGIEG 113 (293)
T ss_pred HHHHHhcccc
Confidence 7777777763
No 117
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=53.51 E-value=2.2e+02 Score=30.74 Aligned_cols=203 Identities=18% Similarity=0.127 Sum_probs=89.9
Q ss_pred HHHHHHhCCCEeeecCCCC----ChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhc--CCCE
Q 006203 243 VQWATMWGADTVMDLSTGR----HIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQ--GVDY 316 (657)
Q Consensus 243 l~~A~~~GADtvMDLSTGg----di~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeq--GVDf 316 (657)
.+.|+.-|.-||+|...|- +..+.+..++.+..- ++ + .......+|+.|-+.+..-.+. +|||
T Consensus 72 ~~~a~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (415)
T cd01297 72 LRPSSRQGVTTVVLGNCGVSPAPANPDDLARLIMLMEG--LV-----A----LGEGLPWGWATFAEYLDALEARPPAVNV 140 (415)
T ss_pred hhhHHhCcEEEEEeccccCccCCCChhhhhhhhhhhhc--cc-----c----cccccCCCCCCHHHHHHHHHhcCCCcCe
Confidence 4567888999999865541 111111111111100 11 1 1223346777665555554344 5887
Q ss_pred EE--EeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHh---HhceeEeccCCCCCCCccCC
Q 006203 317 FT--IHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICN---QYDVALSIGDGLRPGSIYDA 391 (657)
Q Consensus 317 ~T--IHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k---~YDVtlSLGDGLRPG~i~DA 391 (657)
.. .|.+++....-. ++.++-=+..+++.++++ +..+ +++..++++-.- +.
T Consensus 141 ~~~~~h~~l~~~~~g~-----------------------~~~~~~~~~~~~~~~l~~~al~~Ga-~g~~~~~~y~~~-~~ 195 (415)
T cd01297 141 AALVGHAALRRAVMGL-----------------------DAREATEEELAKMRELLREALEAGA-LGISTGLAYAPR-LY 195 (415)
T ss_pred eeccCcHHHHHHHhCc-----------------------CCCCCCHHHHHHHHHHHHHHHHCCC-eEEEcccccCCc-cc
Confidence 64 787765432110 001121224555555553 3554 333344433110 12
Q ss_pred CcHHHHHHHHHHHHHHHHHHhcCCeEEe--eCCCCCCCCchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHH
Q 006203 392 NDTAQFAELLTQGELTRRAWDKDVQVMN--EGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGA 469 (657)
Q Consensus 392 ~D~AQ~~EL~~LGEL~krA~e~gVQVMI--EGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGYDHITsAIGa 469 (657)
.|..++. ++.+.|+++|++|++ |+.+=.-+..+++-+.+-++. ++|+|+ .=+.+--+.....+..++-.
T Consensus 196 ~~~~~l~------~~~~~a~~~g~~v~~H~e~~~~~e~~av~~~~~~a~~~--g~r~~i-~H~ss~~~~~~~~~~~~l~~ 266 (415)
T cd01297 196 AGTAELV------ALARVAARYGGVYQTHVRYEGDSILEALDELLRLGRET--GRPVHI-SHLKSAGAPNWGKIDRLLAL 266 (415)
T ss_pred CCHHHHH------HHHHHHHHcCCEEEEEECcccccHHHHHHHHHHHHHHh--CCCEEE-EEEecCCCcccchHHHHHHH
Confidence 2333333 333556777776664 332211222233333333332 456554 11221111111222222322
Q ss_pred H-HhhhcccceeeecCchhhcCC
Q 006203 470 A-NIGALGTALLCYVTPKEHLGL 491 (657)
Q Consensus 470 A-~aa~~GadfLCYVTPaEHLgL 491 (657)
. -+...|.++.|-++| -||.+
T Consensus 267 i~~a~~~G~~v~~e~~p-~~~~~ 288 (415)
T cd01297 267 IEAARAEGLQVTADVYP-YGAGS 288 (415)
T ss_pred HHHHHHhCCcEEEEeCC-CCCCc
Confidence 2 123458888888888 67776
No 118
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=53.44 E-value=1.5e+02 Score=32.45 Aligned_cols=121 Identities=12% Similarity=0.097 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHh-cCCCEEEEecccc--ccccc---cccCcccCc---cccccHH----HHHHHHHcCC-----cCch
Q 006203 298 SWEVFRDTLIEQAE-QGVDYFTIHAGVL--LRYIP---LTAKRMTGI---VSRGGSI----HAKWCLAYHK-----ENFA 359 (657)
Q Consensus 298 t~e~~~d~ieeQAe-qGVDf~TIHaGv~--~~~v~---~~~~RvtgI---VSRGGSi----~a~Wml~h~~-----ENpl 359 (657)
+.|++.+.+++..+ +|...|-|+.|.. .+-++ .....+-++ |==-++. -.+++..-.+ |=|+
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~~~~~~di~~v~avRea~~~~~l~vDaN~~w~~~~A~~~~~~l~~~l~~iEeP~ 247 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGVLPGEEEIEAVKALAEAFPGARLRLDPNGAWSLETAIRLAKELEGVLAYLEDPC 247 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCCCCHHHHHHHHHHHHHhCCCCcEEEeCCCCcCHHHHHHHHHhcCcCCCEEECCC
Confidence 67888887777764 6999999998752 11121 111111000 0000111 1112222222 4566
Q ss_pred hhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHH-------------------HHHHHHHHHHhcCCeEEee
Q 006203 360 YEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELL-------------------TQGELTRRAWDKDVQVMNE 420 (657)
Q Consensus 360 Y~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~-------------------~LGEL~krA~e~gVQVMIE 420 (657)
. .++.+-++.++.++-|.+|..+. +..++.+++ ..-++.+.|.++||++++-
T Consensus 248 ~-d~~~~~~L~~~~~~PIa~dEs~~--------~~~~~~~~i~~~avdil~~d~~~~GGit~~~kia~~A~~~gi~~~~h 318 (395)
T cd03323 248 G-GREGMAEFRRATGLPLATNMIVT--------DFRQLGHAIQLNAVDIPLADHHFWGGMRGSVRVAQVCETWGLGWGMH 318 (395)
T ss_pred C-CHHHHHHHHHhcCCCEEcCCccc--------CHHHHHHHHHcCCCcEEeeccccccCHHHHHHHHHHHHHcCCeEEEe
Confidence 6 79999999999999999987653 223343333 2337788899999999986
Q ss_pred CCCCCCC
Q 006203 421 GPGHIPM 427 (657)
Q Consensus 421 GPGHVPl 427 (657)
+.+|-++
T Consensus 319 ~~~e~~i 325 (395)
T cd03323 319 SNNHLGI 325 (395)
T ss_pred cCcccHH
Confidence 6654443
No 119
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=52.83 E-value=1.2e+02 Score=31.00 Aligned_cols=188 Identities=14% Similarity=0.158 Sum_probs=94.9
Q ss_pred CCChHHHHHHHHHHHHhCCCEe-ee------cCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCcc-CCCCH-HHH-
Q 006203 233 ASSIEEEVYKVQWATMWGADTV-MD------LSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIA-ENLSW-EVF- 302 (657)
Q Consensus 233 ~~~ie~EveKl~~A~~~GADtv-MD------LSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~-~~lt~-e~~- 302 (657)
..+++.=.+-++...++|||.| +| +-.|.-|...=.+-|+|-.-.--...+...+.+....+ .=|+- ..+
T Consensus 10 ~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~ 89 (242)
T cd04724 10 DPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPIL 89 (242)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHH
Confidence 3455554555777788899987 56 66676666544444443321112222222222211111 11111 221
Q ss_pred ----HHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEe
Q 006203 303 ----RDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALS 378 (657)
Q Consensus 303 ----~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlS 378 (657)
-+.+++-++.|+|.+++|- . | |++++++++.|++|++...
T Consensus 90 ~~G~~~fi~~~~~aG~~giiipD----------------------------------l-~-~ee~~~~~~~~~~~g~~~i 133 (242)
T cd04724 90 QYGLERFLRDAKEAGVDGLIIPD----------------------------------L-P-PEEAEEFREAAKEYGLDLI 133 (242)
T ss_pred HhCHHHHHHHHHHCCCcEEEECC----------------------------------C-C-HHHHHHHHHHHHHcCCcEE
Confidence 2235556778999999981 0 1 4688899999999875443
Q ss_pred ccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcC-CeEEeeCCCC---CC-CCchHHHHHHHHHhcCCCCccccCccc
Q 006203 379 IGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKD-VQVMNEGPGH---IP-MHKIPENMQKQLEWCNEAPFYTLGPLT 453 (657)
Q Consensus 379 LGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~g-VQVMIEGPGH---VP-l~~I~~Nv~lqk~lC~~APfYvLGPLv 453 (657)
+- +...+....+.++.. . ..| |-+|--.||. .. ...+.+.++.-++++ +.|..+=|
T Consensus 134 ~~-------i~P~T~~~~i~~i~~------~--~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~-~~pI~vgg--- 194 (242)
T cd04724 134 FL-------VAPTTPDERIKKIAE------L--ASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYT-DLPIAVGF--- 194 (242)
T ss_pred EE-------eCCCCCHHHHHHHHh------h--CCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcC-CCcEEEEc---
Confidence 31 556666555544432 1 122 3455434433 21 244556666666654 45554422
Q ss_pred cccCCC-chhHHHhHHHHHhhhcccc
Q 006203 454 TDIAPG-YDHITSAIGAANIGALGTA 478 (657)
Q Consensus 454 TDIApG-YDHITsAIGaA~aa~~Gad 478 (657)
+-- -+|+..++.+|=..-.|..
T Consensus 195 ---GI~~~e~~~~~~~~ADgvVvGSa 217 (242)
T cd04724 195 ---GISTPEQAAEVAKYADGVIVGSA 217 (242)
T ss_pred ---cCCCHHHHHHHHccCCEEEECHH
Confidence 222 2356555554333334433
No 120
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=52.50 E-value=1.1e+02 Score=30.17 Aligned_cols=140 Identities=15% Similarity=0.141 Sum_probs=85.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccc----------c---cc--CcccCccccccHHHHHHHHHcCC----
Q 006203 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIP----------L---TA--KRMTGIVSRGGSIHAKWCLAYHK---- 355 (657)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~----------~---~~--~RvtgIVSRGGSi~a~Wml~h~~---- 355 (657)
..++.++.++.+..-.+.|||++-+=-+...+.+| . .. -|+..++ |.|.-..+-...++-
T Consensus 14 ~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~-~~~~~~i~~a~~~g~~~i~ 92 (265)
T cd03174 14 ATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALV-RNREKGIERALEAGVDEVR 92 (265)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEc-cCchhhHHHHHhCCcCEEE
Confidence 56799999999999999999999887776652222 1 11 2444444 443222333333321
Q ss_pred ------cCchhh--------hHHHHHHH---HhHh--ceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCe
Q 006203 356 ------ENFAYE--------HWDEILDI---CNQY--DVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQ 416 (657)
Q Consensus 356 ------ENplY~--------~FD~ileI---~k~Y--DVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQ 416 (657)
++..+. +|+.+++. ++++ .|.+++-|..|| ..+. ..+-++++++.+.|+.
T Consensus 93 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~-----~~~~------~~l~~~~~~~~~~g~~ 161 (265)
T cd03174 93 IFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC-----KTDP------EYVLEVAKALEEAGAD 161 (265)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC-----CCCH------HHHHHHHHHHHHcCCC
Confidence 111111 46665544 4554 566677788887 3333 2355677888888884
Q ss_pred E-EeeC-CCCCCCCchHHHHHHHHHhcCCCCc
Q 006203 417 V-MNEG-PGHIPMHKIPENMQKQLEWCNEAPF 446 (657)
Q Consensus 417 V-MIEG-PGHVPl~~I~~Nv~lqk~lC~~APf 446 (657)
. .+-- -|..--.++..-+..-++.+.+.||
T Consensus 162 ~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~ 193 (265)
T cd03174 162 EISLKDTVGLATPEEVAELVKALREALPDVPL 193 (265)
T ss_pred EEEechhcCCcCHHHHHHHHHHHHHhCCCCeE
Confidence 3 3332 3788888899888888887776554
No 121
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=51.99 E-value=20 Score=38.43 Aligned_cols=110 Identities=15% Similarity=0.152 Sum_probs=63.4
Q ss_pred CCCHHHHHHHHHHHHhcC-CCEEEEeccccccccccc-----cCcccCcc-cccc---HHHHHHHHHc--CCcCchhhhH
Q 006203 296 NLSWEVFRDTLIEQAEQG-VDYFTIHAGVLLRYIPLT-----AKRMTGIV-SRGG---SIHAKWCLAY--HKENFAYEHW 363 (657)
Q Consensus 296 ~lt~e~~~d~ieeQAeqG-VDf~TIHaGv~~~~v~~~-----~~RvtgIV-SRGG---Si~a~Wml~h--~~ENplY~~F 363 (657)
+++-.+.++.+++-..++ |+++.+ .+|.|-. ..++..-. -+.| .=+..++..- .++....++.
T Consensus 91 E~~~~~~~~~~~~~~~~~~v~lvs~-----~dH~pg~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (325)
T cd01306 91 ELADPAVLPELESLMADPRVHLVSL-----MDHTPGQRQFRDLEKYREYYAKKYGLSDEEVEEAILERKARAAAYAPANR 165 (325)
T ss_pred eecCccHHHHHHHHhcCCCcCEEEE-----eCCCCccccccCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCHHHH
Confidence 345556667777766665 777755 2333311 01222222 2222 1222232221 2222226899
Q ss_pred HHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHH----------HHHHHHHhcCCeEEe
Q 006203 364 DEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQG----------ELTRRAWDKDVQVMN 419 (657)
Q Consensus 364 D~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LG----------EL~krA~e~gVQVMI 419 (657)
..|++.++++++.+. +||......+.+...+| +.++.+.++|+.|+.
T Consensus 166 ~~iv~~A~~~gl~va---------sH~d~~~~~v~~a~~~Gv~~~E~p~t~e~a~~a~~~G~~vv~ 222 (325)
T cd01306 166 SELAALARARGIPLA---------SHDDDTPEHVAEAHELGVVISEFPTTLEAAKAARELGLQTLM 222 (325)
T ss_pred HHHHHHHHHCCCcEE---------EecCCChHHHHHHHHCCCeeccCCCCHHHHHHHHHCCCEEEe
Confidence 999999999988664 34444445666666653 788999999999993
No 122
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=51.73 E-value=1.4e+02 Score=30.55 Aligned_cols=141 Identities=13% Similarity=0.068 Sum_probs=84.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccc-----cccCcccCcccc--------------ccHHHHHHHHHcCC
Q 006203 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIP-----LTAKRMTGIVSR--------------GGSIHAKWCLAYHK 355 (657)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~-----~~~~RvtgIVSR--------------GGSi~a~Wml~h~~ 355 (657)
...+++.+.+..++|.++|.|++-|=++.++.... ....|+..+|.. ==.. ++=++.++.
T Consensus 19 ~~~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~piSIDT~~~~v-~~aaL~~g~ 97 (258)
T cd00423 19 KFLSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPISVDTFNAEV-AEAALKAGA 97 (258)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCcHHH-HHHHHHhCC
Confidence 45789999999999999999999999998853321 011233333321 1111 222333321
Q ss_pred c--Cch-hhhH-HHHHHHHhHhceeEec----cCCCCCCCccCCCcHHHHHH--HHHHHHHHHHHHhcCC---eEEeeCC
Q 006203 356 E--NFA-YEHW-DEILDICNQYDVALSI----GDGLRPGSIYDANDTAQFAE--LLTQGELTRRAWDKDV---QVMNEGP 422 (657)
Q Consensus 356 E--Npl-Y~~F-D~ileI~k~YDVtlSL----GDGLRPG~i~DA~D~AQ~~E--L~~LGEL~krA~e~gV---QVMIEGP 422 (657)
. |-. .+.+ +++++++++|++.+=+ |++.+..+..+-. ...| +..+-++++++.++|| ++++ =|
T Consensus 98 ~iINdis~~~~~~~~~~l~~~~~~~vV~m~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~Gi~~~~Iil-DP 173 (258)
T cd00423 98 DIINDVSGGRGDPEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYA---DVVDEVVEFLEERVEAATEAGIPPEDIIL-DP 173 (258)
T ss_pred CEEEeCCCCCCChHHHHHHHHcCCCEEEECcCCCCcccccCCCcc---hHHHHHHHHHHHHHHHHHHcCCCHHHEEE-eC
Confidence 1 110 1122 8999999999875543 4455443432211 1222 4567789999999996 4454 48
Q ss_pred CCCCCCchHHHHHHHHHh
Q 006203 423 GHIPMHKIPENMQKQLEW 440 (657)
Q Consensus 423 GHVPl~~I~~Nv~lqk~l 440 (657)
|.-|....+.|+.+-+.+
T Consensus 174 g~g~~k~~~~~~~~l~~i 191 (258)
T cd00423 174 GIGFGKTEEHNLELLRRL 191 (258)
T ss_pred CCCccCCHHHHHHHHHHH
Confidence 888887777776665554
No 123
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=51.56 E-value=98 Score=30.82 Aligned_cols=78 Identities=12% Similarity=0.119 Sum_probs=53.2
Q ss_pred hhhHHHHHHHHhHhcee---EeccCCCCCCCccCCCcHHHHHHH-HHHHHHHHHHHhcCCeEEeeC--CC-CCCCCchHH
Q 006203 360 YEHWDEILDICNQYDVA---LSIGDGLRPGSIYDANDTAQFAEL-LTQGELTRRAWDKDVQVMNEG--PG-HIPMHKIPE 432 (657)
Q Consensus 360 Y~~FD~ileI~k~YDVt---lSLGDGLRPG~i~DA~D~AQ~~EL-~~LGEL~krA~e~gVQVMIEG--PG-HVPl~~I~~ 432 (657)
.++|++.+++|++..+. +..| .+|...+ +..+++.+ ..|-+|++.|.++||++-+|- |. ...++-.++
T Consensus 89 ~~~~~~~i~~a~~lGa~~i~~~~~---~~~~~~~--~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~~~~~~~~~~t~~~ 163 (275)
T PRK09856 89 LDMIKLAMDMAKEMNAGYTLISAA---HAGYLTP--PNVIWGRLAENLSELCEYAENIGMDLILEPLTPYESNVVCNAND 163 (275)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCC---CCCCCCC--HHHHHHHHHHHHHHHHHHHHHcCCEEEEecCCCCcccccCCHHH
Confidence 68899999999998654 3333 3343332 23333333 367899999999999999994 21 234667788
Q ss_pred HHHHHHHhcC
Q 006203 433 NMQKQLEWCN 442 (657)
Q Consensus 433 Nv~lqk~lC~ 442 (657)
-+++-+.+.+
T Consensus 164 ~~~l~~~~~~ 173 (275)
T PRK09856 164 VLHALALVPS 173 (275)
T ss_pred HHHHHHHcCC
Confidence 8888877654
No 124
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=51.36 E-value=27 Score=38.18 Aligned_cols=142 Identities=15% Similarity=0.116 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEecc------cccc-------cccc-cc---CcccCcccc--ccH-HHHHHHHHcCCc-
Q 006203 298 SWEVFRDTLIEQAEQGVDYFTIHAG------VLLR-------YIPL-TA---KRMTGIVSR--GGS-IHAKWCLAYHKE- 356 (657)
Q Consensus 298 t~e~~~d~ieeQAeqGVDf~TIHaG------v~~~-------~v~~-~~---~RvtgIVSR--GGS-i~a~Wml~h~~E- 356 (657)
++.++.+.|.+-++.|.|.+++|.. .... .+.. .+ =++..+... .+. +...-+...+++
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g~las~d~~v 109 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDGGFTSNDRSV 109 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCccccCCCCCCCCHHH
Confidence 5668889999999999999999943 2210 1110 11 121111110 000 000001111111
Q ss_pred -CchhhhHHHHHHHHhHhce-eEeccCCCCCCCccC-CCc-HHHHH-HHHHHHHHHHHHHhc--CCeEEeeC-CC----C
Q 006203 357 -NFAYEHWDEILDICNQYDV-ALSIGDGLRPGSIYD-AND-TAQFA-ELLTQGELTRRAWDK--DVQVMNEG-PG----H 424 (657)
Q Consensus 357 -NplY~~FD~ileI~k~YDV-tlSLGDGLRPG~i~D-A~D-~AQ~~-EL~~LGEL~krA~e~--gVQVMIEG-PG----H 424 (657)
---.+++.+-+++|++.+. ++++==| |.|.-.| ..| +.++. -...|.+|++.|.++ ||++.||= |. +
T Consensus 110 R~~ai~~~kraId~A~eLGa~~v~v~~G-~~g~~~~~~~d~~~a~~~~~e~L~~lae~A~~~G~GV~laLEp~p~~~~~~ 188 (382)
T TIGR02631 110 RRYALRKVLRNMDLGAELGAETYVVWGG-REGAEYDGAKDVRAALDRMREALNLLAAYAEDQGYGLRFALEPKPNEPRGD 188 (382)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEccC-CCCCcCccccCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEccCCCCCCcc
Confidence 1225677889999999988 3555444 3343333 233 22333 345679999999997 69999996 33 3
Q ss_pred CCCCchHHHHHHHHHh
Q 006203 425 IPMHKIPENMQKQLEW 440 (657)
Q Consensus 425 VPl~~I~~Nv~lqk~l 440 (657)
.-++.+..-+.+.+++
T Consensus 189 ~ll~T~~~al~li~~v 204 (382)
T TIGR02631 189 ILLPTVGHALAFIETL 204 (382)
T ss_pred eecCCHHHHHHHHHHc
Confidence 4477777766666665
No 125
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=51.15 E-value=1.1e+02 Score=31.67 Aligned_cols=121 Identities=10% Similarity=0.114 Sum_probs=71.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccc--cccCcccCccccc-----------cHHHHHHHHHc--C-----
Q 006203 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIP--LTAKRMTGIVSRG-----------GSIHAKWCLAY--H----- 354 (657)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~--~~~~RvtgIVSRG-----------GSi~a~Wml~h--~----- 354 (657)
.+-+.+...+..++|.++|.|++.|=++.. .++ ..-.|+...|..- -..+ .=.+.+ +
T Consensus 21 ~~~~~d~~~~~A~~~~~~GAdiIDIG~~~~--~~~~~ee~~r~v~~i~~~~~~piSIDT~~~~v~-e~aL~~~~G~~iIN 97 (252)
T cd00740 21 KAEDYDEALDVARQQVEGGAQILDLNVDYG--GLDGVSAMKWLLNLLATEPTVPLMLDSTNWEVI-EAGLKCCQGKCVVN 97 (252)
T ss_pred HcCCHHHHHHHHHHHHHCCCCEEEECCCCC--CCCHHHHHHHHHHHHHHhcCCcEEeeCCcHHHH-HHHHhhCCCCcEEE
Confidence 445779999999999999999999988754 222 1224554444311 1122 223332 1
Q ss_pred CcCchh--hhHHHHHHHHhHhceeEecc----CCCCCCCccCCCcHHHHHHHHHHHHHHHHHH-hcCC---eEEeeCCCC
Q 006203 355 KENFAY--EHWDEILDICNQYDVALSIG----DGLRPGSIYDANDTAQFAELLTQGELTRRAW-DKDV---QVMNEGPGH 424 (657)
Q Consensus 355 ~ENplY--~~FD~ileI~k~YDVtlSLG----DGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~-e~gV---QVMIEGPGH 424 (657)
-=|-+. +.++++++.+++|++.+=+= .| .|- +..+ -+..+-++.+++. +.|| ++++- ||.
T Consensus 98 sIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~~~g-~p~---t~~~-----~~~~~~~~~~~~~~~~gi~~~~IiiD-Pgi 167 (252)
T cd00740 98 SINLEDGEERFLKVARLAKEHGAAVVVLAFDEQG-QAK---TRDK-----KVEIAERAYEALTEFVGFPPEDIIFD-PLI 167 (252)
T ss_pred eCCCCCCccccHHHHHHHHHhCCCEEEeccCCCC-CCC---CHHH-----HHHHHHHHHHHHHHHcCCCHHHEEEe-CCc
Confidence 112222 56899999999997665441 22 132 2211 2456667777776 4577 77774 666
Q ss_pred CCCC
Q 006203 425 IPMH 428 (657)
Q Consensus 425 VPl~ 428 (657)
-|..
T Consensus 168 g~~~ 171 (252)
T cd00740 168 LPIA 171 (252)
T ss_pred cccc
Confidence 6655
No 126
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=50.83 E-value=2.7e+02 Score=27.85 Aligned_cols=102 Identities=19% Similarity=0.213 Sum_probs=60.6
Q ss_pred HHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhH----HHHHHHHhHhceeE
Q 006203 302 FRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHW----DEILDICNQYDVAL 377 (657)
Q Consensus 302 ~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~F----D~ileI~k~YDVtl 377 (657)
|...++.-.+.|+ .+++||+=..... |.. -..|++..+. ....|- |+.++++++.++.+
T Consensus 127 l~~~~~~A~~~g~-~v~~H~~e~~~~~-------------g~~-~i~~~~~~~~--~~i~H~~~l~~~~~~~la~~g~~v 189 (263)
T cd01305 127 LEDILELLRRRGK-LFAIHASETRESV-------------GMT-DIERALDLEP--DLLVHGTHLTDEDLELVRENGVPV 189 (263)
T ss_pred HHHHHHHHHHCCC-eeEEecCCCCCCC-------------Cch-hHHHHHhCCC--CEEEEcCCCCHHHHHHHHHcCCcE
Confidence 7777777777898 7789997543311 111 1223333311 122332 67899999999998
Q ss_pred ec--------cCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEee--CCCCCCCCchHHHHHHHHHhcC
Q 006203 378 SI--------GDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNE--GPGHIPMHKIPENMQKQLEWCN 442 (657)
Q Consensus 378 SL--------GDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIE--GPGHVPl~~I~~Nv~lqk~lC~ 442 (657)
+. |.|+-| +++.+++||.|-+= ++..-+.+.+ ..|++....++
T Consensus 190 ~~~P~sn~~l~~g~~p---------------------~~~l~~~Gv~v~lGtD~~~~~~~~~~-~~~~~~~~~~~ 242 (263)
T cd01305 190 VLCPRSNLYFGVGIPP---------------------VAELLKLGIKVLLGTDNVMVNEPDMW-AEMEFLAKYSR 242 (263)
T ss_pred EEChhhHHHhCCCCCC---------------------HHHHHHCCCcEEEECCCCccCCCCHH-HHHHHHHHHhc
Confidence 84 444322 57888999999983 2334455544 35555544444
No 127
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=50.78 E-value=1.1e+02 Score=32.00 Aligned_cols=158 Identities=13% Similarity=0.022 Sum_probs=96.0
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeE
Q 006203 298 SWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVAL 377 (657)
Q Consensus 298 t~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtl 377 (657)
+.+.++++-++-.+.|+.|+ +.++.+ +|-..- | -.-|--+.+..|-++|+++++.+
T Consensus 37 ~~~~~~~~A~~lk~~~~k~~-------r~~~~K--pRtsp~-s--------------~~g~g~~gl~~l~~~~~~~Gl~~ 92 (260)
T TIGR01361 37 SEEQIMETARFVKEAGAKIL-------RGGAFK--PRTSPY-S--------------FQGLGEEGLKLLRRAADEHGLPV 92 (260)
T ss_pred CHHHHHHHHHHHHHHHHHhc-------cCceec--CCCCCc-c--------------ccccHHHHHHHHHHHHHHhCCCE
Confidence 46777777777777776633 233332 343320 1 12233677888999999999876
Q ss_pred eccCCCCCCCccCCCcHHHHHHHH-------------HHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHH------
Q 006203 378 SIGDGLRPGSIYDANDTAQFAELL-------------TQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQL------ 438 (657)
Q Consensus 378 SLGDGLRPG~i~DA~D~AQ~~EL~-------------~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk------ 438 (657)
.- +..|..|+.+|. +.-.|.+.+-+.|..|++.=+=+.-+.+|..=++.-+
T Consensus 93 ~t----------~~~d~~~~~~l~~~~d~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~ 162 (260)
T TIGR01361 93 VT----------EVMDPRDVEIVAEYADILQIGARNMQNFELLKEVGKQGKPVLLKRGMGNTIEEWLYAAEYILSSGNGN 162 (260)
T ss_pred EE----------eeCChhhHHHHHhhCCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCc
Confidence 43 566666666663 3447888999999999999887777888877766654
Q ss_pred -HhcC-CCCcc-ccCcccc------------ccCCCc--hhHHH-----hHHHHHhhhcccc---eeeecCchhhc
Q 006203 439 -EWCN-EAPFY-TLGPLTT------------DIAPGY--DHITS-----AIGAANIGALGTA---LLCYVTPKEHL 489 (657)
Q Consensus 439 -~lC~-~APfY-vLGPLvT------------DIApGY--DHITs-----AIGaA~aa~~Gad---fLCYVTPaEHL 489 (657)
-+|| +..-| --.++.- +.--|| ||..+ ..=+-.|..+||+ +=.-.||...+
T Consensus 163 i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~t~d~a~ 238 (260)
T TIGR01361 163 VILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHPDPEKAL 238 (260)
T ss_pred EEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCCCccccC
Confidence 3566 45444 3333332 344566 68544 2112234567888 33455666554
No 128
>PRK06886 hypothetical protein; Validated
Probab=50.46 E-value=1.3e+02 Score=32.33 Aligned_cols=96 Identities=19% Similarity=0.265 Sum_probs=58.2
Q ss_pred ccchhhhHHHHhcCccCCCCHHHHHH----HHHHHHhcCCCEEEEecccc----ccccc-------cccCcc--------
Q 006203 279 GTVPIYQALEKVDGIAENLSWEVFRD----TLIEQAEQGVDYFTIHAGVL----LRYIP-------LTAKRM-------- 335 (657)
Q Consensus 279 GTVPIYqA~~k~~g~~~~lt~e~~~d----~ieeQAeqGVDf~TIHaGv~----~~~v~-------~~~~Rv-------- 335 (657)
|| ++++++.....-..+|.+++.+ .|+.+..+|+-+|--|+-|. +..++ ...+|+
T Consensus 46 g~--l~e~i~~~~~~k~~~t~~dv~~Ra~~~l~~~~~~Gtt~iRtHvdvd~~~~l~~~~a~~~~r~~~~~~idlq~vafP 123 (329)
T PRK06886 46 AN--LQQKWDLVDEVKRNSTVEDYYARFSQAIELMISQGVTAFGTFVDIDPICEDRAIIAAHKAREVYKHDIILKFANQT 123 (329)
T ss_pred CC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcCcccEeeeeccCCCccccHHHHHHHHHHHhcCcceEEEEecC
Confidence 55 6777664433335667777765 78889999999999999662 22222 112332
Q ss_pred -cCccccccHHHHHHHHHc-----------CCcCch----hhhHHHHHHHHhHhceeEec
Q 006203 336 -TGIVSRGGSIHAKWCLAY-----------HKENFA----YEHWDEILDICNQYDVALSI 379 (657)
Q Consensus 336 -tgIVSRGGSi~a~Wml~h-----------~~ENpl----Y~~FD~ileI~k~YDVtlSL 379 (657)
-|+.+.+| .+||..- +.+.+- =++++.+++++++||+-+.+
T Consensus 124 q~g~~~~~~---~~l~~~al~~advvGGiP~~~~~~~~~~~e~l~~~~~lA~~~g~~Id~ 180 (329)
T PRK06886 124 LKGVIEPTA---KKWFDIGSEMVDMIGGLPYRDELDYGRGLEAMDILLDTAKSLGKMVHV 180 (329)
T ss_pred hhhccCccH---HHHHHHHHHhCCEEeCccCCcCCCCCCCHHHHHHHHHHHHHcCCCeEE
Confidence 46776666 3666442 111111 25688888888888865554
No 129
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=50.05 E-value=3.1e+02 Score=28.24 Aligned_cols=184 Identities=16% Similarity=0.115 Sum_probs=96.1
Q ss_pred eEeeccccCCCCCChHHHHHHHHHHHHhCCCE----eeecCCCCChH---HHHHHHHhc-CCCccccchhhhHHHHhcCc
Q 006203 222 KVNANIGNSAVASSIEEEVYKVQWATMWGADT----VMDLSTGRHIH---ETREWILRN-SAVPVGTVPIYQALEKVDGI 293 (657)
Q Consensus 222 KVNANIGtS~~~~~ie~EveKl~~A~~~GADt----vMDLSTGgdi~---~~R~~Il~n-spvPVGTVPIYqA~~k~~g~ 293 (657)
+|-.+| -|++...+++|+++++ ++|+|. |||=.--.||. .+=++|-+. +.+|+ +
T Consensus 5 ~i~pSi-l~ad~~~l~~~i~~l~---~~g~d~lHiDimDG~FVPN~tfg~~~i~~lr~~~~~~~~--------------d 66 (223)
T PRK08745 5 AIAPSI-LSADFARLGEEVDNVL---KAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHGITAPI--------------D 66 (223)
T ss_pred EEEeeh-hhcCHHHHHHHHHHHH---HcCCCEEEEecccCccCCCcccCHHHHHHHHhhCCCCCE--------------E
Confidence 455555 4666677888887765 579998 67744333321 122233233 22321 1
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCC-----cCchhhhHHHHHH
Q 006203 294 AENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHK-----ENFAYEHWDEILD 368 (657)
Q Consensus 294 ~~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~-----ENplY~~FD~ile 368 (657)
+-=|. +.-.+.|++-++.|+|++|||+--+.. +.+ +.+|+..++. =|| .|.++.|..
T Consensus 67 vHLMv-~~P~~~i~~~~~~gad~I~~H~Ea~~~-~~~---------------~l~~Ir~~g~k~GlalnP-~T~~~~i~~ 128 (223)
T PRK08745 67 VHLMV-EPVDRIVPDFADAGATTISFHPEASRH-VHR---------------TIQLIKSHGCQAGLVLNP-ATPVDILDW 128 (223)
T ss_pred EEecc-CCHHHHHHHHHHhCCCEEEEcccCccc-HHH---------------HHHHHHHCCCceeEEeCC-CCCHHHHHH
Confidence 11111 112234566677899999999975422 111 1233444433 277 488899999
Q ss_pred HHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcC--CeEEeeCCCCCCCCchHHHHHHHHHhcCCCCc
Q 006203 369 ICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKD--VQVMNEGPGHIPMHKIPENMQKQLEWCNEAPF 446 (657)
Q Consensus 369 I~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~g--VQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APf 446 (657)
++..-|..|=+. .-||.-.=.--+..+.-+..|-++.+ +++ +.+.|- |-|-. +|+..-.+ .||=.
T Consensus 129 ~l~~vD~VlvMt--V~PGf~GQ~fi~~~l~KI~~l~~~~~---~~~~~~~IeVD--GGI~~----eti~~l~~--aGaDi 195 (223)
T PRK08745 129 VLPELDLVLVMS--VNPGFGGQAFIPSALDKLRAIRKKID---ALGKPIRLEID--GGVKA----DNIGAIAA--AGADT 195 (223)
T ss_pred HHhhcCEEEEEE--ECCCCCCccccHHHHHHHHHHHHHHH---hcCCCeeEEEE--CCCCH----HHHHHHHH--cCCCE
Confidence 999999776552 34554443333433333333333332 334 334444 33432 34433222 45667
Q ss_pred cccCcccc
Q 006203 447 YTLGPLTT 454 (657)
Q Consensus 447 YvLGPLvT 454 (657)
+|.|--+.
T Consensus 196 ~V~GSaiF 203 (223)
T PRK08745 196 FVAGSAIF 203 (223)
T ss_pred EEEChhhh
Confidence 77775443
No 130
>PRK09237 dihydroorotase; Provisional
Probab=49.55 E-value=26 Score=36.91 Aligned_cols=167 Identities=11% Similarity=0.076 Sum_probs=81.3
Q ss_pred HHHHHhCCCEeeecCC--CCChHHHHHHHHhcCCCcc-------ccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCC
Q 006203 244 QWATMWGADTVMDLST--GRHIHETREWILRNSAVPV-------GTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGV 314 (657)
Q Consensus 244 ~~A~~~GADtvMDLST--Ggdi~~~R~~Il~nspvPV-------GTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGV 314 (657)
+.|+..|.-||+|..+ ..+++.+++.+.+.+.+|+ +.+|+-... -.....++.+++.+.+.+. .+||
T Consensus 75 ~~~~~~G~Ttv~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~v 150 (380)
T PRK09237 75 EVGVRSGVTTVVDAGSAGADNFDDFRKLTIEASKTRVLAFLNISRIGLLAQDE---LADLEDIDADAVAEAVKRN-PDFI 150 (380)
T ss_pred HHHHhCCcCEEEECCCCCCCCHHHHHHHHHhhhCcEEEEEEeeecccccccch---hcCHhHCCHHHHHHHHHhC-cCcE
Confidence 4689999999999653 3477888888887654432 344442111 1123446777777766642 1233
Q ss_pred CEEEEeccccccccc---cccCcccCcccc-ccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccC
Q 006203 315 DYFTIHAGVLLRYIP---LTAKRMTGIVSR-GGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYD 390 (657)
Q Consensus 315 Df~TIHaGv~~~~v~---~~~~RvtgIVSR-GGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~D 390 (657)
--+-. .+.....+ ....++..++.+ -| .++.- |.+|+. ...++|++++++-++..=.-.|--...+.|
T Consensus 151 ~glk~--~~~~~v~~~~~~~~~~~~~~~a~~~g----~~v~~-H~~~~~-~~~~~l~~~l~~g~~~~H~~~~~~~~~~~~ 222 (380)
T PRK09237 151 VGIKA--RMSSSVVGDNGIEPLELAKAIAAEAN----LPLMV-HIGNPP-PSLEEILELLRPGDILTHCFNGKPNRILDE 222 (380)
T ss_pred EEEEE--EEecccccccCCchHHHHHHHHHhcC----CCEEE-EcCCCC-CCHHHHHhhccCCCEEEecCCCCCCCccCC
Confidence 22111 11111111 011111111111 00 01111 233332 456777777665444333333322223333
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhcCCeEEe-eCCCCCCCCchH
Q 006203 391 ANDTAQFAELLTQGELTRRAWDKDVQVMN-EGPGHIPMHKIP 431 (657)
Q Consensus 391 A~D~AQ~~EL~~LGEL~krA~e~gVQVMI-EGPGHVPl~~I~ 431 (657)
--+..+.++.+.+.|+.+++ +|.++.++..+.
T Consensus 223 ---------~~~~~~~a~~~l~~G~~~~ig~g~~~~~~~~~~ 255 (380)
T PRK09237 223 ---------DGELRPSVLEALERGVRLDVGHGTASFSFKVAE 255 (380)
T ss_pred ---------CCcchHHHHHHHHCCEEEEecCCCCcccHHHHH
Confidence 12233556667778999988 466677775543
No 131
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=49.26 E-value=1.5e+02 Score=31.19 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccc
Q 006203 298 SWEVFRDTLIEQAEQGVDYFTIHAGV 323 (657)
Q Consensus 298 t~e~~~d~ieeQAeqGVDf~TIHaGv 323 (657)
+.+.+.+.+.+..++|.+.|-||+|.
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~ 164 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGG 164 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 78999999999999999999999984
No 132
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.93 E-value=32 Score=36.56 Aligned_cols=63 Identities=24% Similarity=0.226 Sum_probs=40.1
Q ss_pred HHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEe
Q 006203 241 YKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIH 320 (657)
Q Consensus 241 eKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGVDf~TIH 320 (657)
+-+..|+++|||.|| | ..-+..++|+.+-..- +.+| ++-.||. | .+.|++-|+-||||+.+=
T Consensus 205 eea~ea~~~gaDiI~-L-Dn~s~e~l~~av~~~~----~~~~----leaSGGI----~----~~ni~~yA~tGVD~Is~G 266 (281)
T PRK06106 205 DQLEEALELGVDAVL-L-DNMTPDTLREAVAIVA----GRAI----TEASGRI----T----PETAPAIAASGVDLISVG 266 (281)
T ss_pred HHHHHHHHcCCCEEE-e-CCCCHHHHHHHHHHhC----CCce----EEEECCC----C----HHHHHHHHhcCCCEEEeC
Confidence 345567899999998 3 3336677777664321 2333 2222332 2 367888899999999764
Q ss_pred c
Q 006203 321 A 321 (657)
Q Consensus 321 a 321 (657)
+
T Consensus 267 a 267 (281)
T PRK06106 267 W 267 (281)
T ss_pred h
Confidence 4
No 133
>PRK08005 epimerase; Validated
Probab=48.89 E-value=33 Score=34.88 Aligned_cols=122 Identities=16% Similarity=0.004 Sum_probs=66.6
Q ss_pred eEeeccccCCCCCChHHHHHHHHHHHHhCCCE----eeecCCCCChH---HHHHHHHhcCCCccccchhhhHHHHhcCcc
Q 006203 222 KVNANIGNSAVASSIEEEVYKVQWATMWGADT----VMDLSTGRHIH---ETREWILRNSAVPVGTVPIYQALEKVDGIA 294 (657)
Q Consensus 222 KVNANIGtS~~~~~ie~EveKl~~A~~~GADt----vMDLSTGgdi~---~~R~~Il~nspvPVGTVPIYqA~~k~~g~~ 294 (657)
+|..+| -|++...+++|++++. ++|+|. |||=.--.||. .+=++|-+.+++|+ ++ +=-+
T Consensus 2 ~i~pSi-l~ad~~~l~~el~~l~---~~g~d~lHiDvMDG~FVPN~tfG~~~i~~l~~~t~~~~------Dv----HLMv 67 (210)
T PRK08005 2 ILHPSL-ASADPLRYAEALTALH---DAPLGSLHLDIEDTSFINNITFGMKTIQAVAQQTRHPL------SF----HLMV 67 (210)
T ss_pred EEEeeh-hhCCHHHHHHHHHHHH---HCCCCEEEEeccCCCcCCccccCHHHHHHHHhcCCCCe------EE----Eecc
Confidence 444555 4566677888887775 569997 67743333321 23333333333332 11 0000
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCc-----CchhhhHHHHHHH
Q 006203 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKE-----NFAYEHWDEILDI 369 (657)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~E-----NplY~~FD~ileI 369 (657)
. +++. .|++-++.|+|++|||.--+.. +.+ +.+++..++.. ||- |-.+.|..+
T Consensus 68 ~--~P~~---~i~~~~~~gad~It~H~Ea~~~-~~~---------------~l~~Ik~~G~k~GlAlnP~-Tp~~~i~~~ 125 (210)
T PRK08005 68 S--SPQR---WLPWLAAIRPGWIFIHAESVQN-PSE---------------ILADIRAIGAKAGLALNPA-TPLLPYRYL 125 (210)
T ss_pred C--CHHH---HHHHHHHhCCCEEEEcccCccC-HHH---------------HHHHHHHcCCcEEEEECCC-CCHHHHHHH
Confidence 1 2343 5566678899999999974321 111 22344444332 553 777777777
Q ss_pred HhHhceeEec
Q 006203 370 CNQYDVALSI 379 (657)
Q Consensus 370 ~k~YDVtlSL 379 (657)
+..-|..|=+
T Consensus 126 l~~vD~VlvM 135 (210)
T PRK08005 126 ALQLDALMIM 135 (210)
T ss_pred HHhcCEEEEE
Confidence 7777765544
No 134
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=48.73 E-value=78 Score=33.90 Aligned_cols=105 Identities=21% Similarity=0.197 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEeccccccc-cccc-cCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHh
Q 006203 296 NLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRY-IPLT-AKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQY 373 (657)
Q Consensus 296 ~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~-v~~~-~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~Y 373 (657)
+++.+++.++.+.-.+.|+|++++|-++.... +... .....|-.| |-.+ .+..++.+-++.++.
T Consensus 221 ~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~S-G~~~-------------~~~~l~~v~~l~~~~ 286 (344)
T PRK05286 221 DLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLS-GRPL-------------FERSTEVIRRLYKEL 286 (344)
T ss_pred CCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcc-cHHH-------------HHHHHHHHHHHHHHh
Confidence 56777788877777778999999999863211 1110 011122222 1111 112445666776766
Q ss_pred --ceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCC
Q 006203 374 --DVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHI 425 (657)
Q Consensus 374 --DVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHV 425 (657)
++.|.- -|-|.++.|..++-+ .=..+++.++. .|.+||.-+
T Consensus 287 ~~~ipIig-----~GGI~s~eda~e~l~--aGAd~V~v~~~----~~~~gP~~~ 329 (344)
T PRK05286 287 GGRLPIIG-----VGGIDSAEDAYEKIR--AGASLVQIYSG----LIYEGPGLV 329 (344)
T ss_pred CCCCCEEE-----ECCCCCHHHHHHHHH--cCCCHHHHHHH----HHHhCchHH
Confidence 565553 355666666555443 22455555554 456677644
No 135
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=48.49 E-value=20 Score=37.62 Aligned_cols=51 Identities=22% Similarity=0.223 Sum_probs=31.4
Q ss_pred hHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEecc
Q 006203 263 IHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAG 322 (657)
Q Consensus 263 i~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGVDf~TIHaG 322 (657)
+.++=+.+.++.++|| ||-| +.+ .+-+.+++++.+..-.+.||+++|||+=
T Consensus 110 ~~~iv~~~~~~~~~pv-svKi-----R~g---~~~~~~~~~~~~~~l~~~G~~~i~vH~R 160 (309)
T PF01207_consen 110 LAEIVKAVRKAVPIPV-SVKI-----RLG---WDDSPEETIEFARILEDAGVSAITVHGR 160 (309)
T ss_dssp HHHHHHHHHHH-SSEE-EEEE-----ESE---CT--CHHHHHHHHHHHHTT--EEEEECS
T ss_pred hhHHHHhhhcccccce-EEec-----ccc---cccchhHHHHHHHHhhhcccceEEEecC
Confidence 3445555666677666 4544 221 2235677899999999999999999994
No 136
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=48.17 E-value=67 Score=31.21 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhcCCCEEEEecc
Q 006203 300 EVFRDTLIEQAEQGVDYFTIHAG 322 (657)
Q Consensus 300 e~~~d~ieeQAeqGVDf~TIHaG 322 (657)
+++.+.+..-.+.||||++||.+
T Consensus 138 ~~~~~~~~~l~~~Gvd~i~v~~~ 160 (231)
T cd02801 138 EETLELAKALEDAGASALTVHGR 160 (231)
T ss_pred hHHHHHHHHHHHhCCCEEEECCC
Confidence 46666666666779999999975
No 137
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=48.11 E-value=22 Score=42.36 Aligned_cols=110 Identities=19% Similarity=0.195 Sum_probs=77.1
Q ss_pred cCccCCCCHHHHHHHHHHHHhcCCCEEEEecccc----c--cccccccCcccCccccccHHHHHHHHHcCCcCchhhhH-
Q 006203 291 DGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVL----L--RYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHW- 363 (657)
Q Consensus 291 ~g~~~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~----~--~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~F- 363 (657)
||+.--|+. -++.+++.-...|...+.||-|.. - +.++++...+-+|-++||++| -..+-+|+-+.+
T Consensus 9 GGdapGmNa-aIravv~~a~~~g~~V~gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt~L-----GtsR~~~~~~~~~ 82 (745)
T TIGR02478 9 GGDAQGMNA-AVRAVVRMAIYVGCRVYAIREGYQGLVDGGDNIEEANWEDVRGILSLGGTII-----GTARCKEFRERPG 82 (745)
T ss_pred CCCcHHHHH-HHHHHHHHHHHCCCEEEEEecCHHHHhcCCCCeEECCHHHHhhHHhCCCcee-----cCCCCCcccCHHH
Confidence 344333433 345566666678999999999862 2 456677789999999999975 566777765544
Q ss_pred -HHHHHHHhHhcee--Eec-cCCCCCCCccCCCcHHH---------HHHHHHHHHHHHHHHhcC
Q 006203 364 -DEILDICNQYDVA--LSI-GDGLRPGSIYDANDTAQ---------FAELLTQGELTRRAWDKD 414 (657)
Q Consensus 364 -D~ileI~k~YDVt--lSL-GDGLRPG~i~DA~D~AQ---------~~EL~~LGEL~krA~e~g 414 (657)
+.+++.+++|++. +-+ || |+.+.|+ ++||..-|++++.+.+.+
T Consensus 83 ~~~~~~~L~~~~Id~LivIGGd--------gS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~ 138 (745)
T TIGR02478 83 RLKAARNLIKRGIDNLVVIGGD--------GSLTGADLFREEWPSLLEELVDTGKITAEQAEEH 138 (745)
T ss_pred HHHHHHHHHHhCCCEEEEECCh--------hHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcC
Confidence 8999999999874 334 44 3444444 578888888888888864
No 138
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=47.94 E-value=42 Score=34.20 Aligned_cols=120 Identities=22% Similarity=0.171 Sum_probs=82.0
Q ss_pred CCceeEeeccccCCCCCChHHHHHHHHHHHHhCCCE---eeecCC--CCChHHHHHHHHhcCCCccccchhhhHHHHhcC
Q 006203 218 NFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADT---VMDLST--GRHIHETREWILRNSAVPVGTVPIYQALEKVDG 292 (657)
Q Consensus 218 ~l~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADt---vMDLST--Ggdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g 292 (657)
+-.+||.+=||-.-.....+.-+.-.+.|++.|||- |+++|- .+|++.++++|-.-...- + |+ +-|+-=
T Consensus 55 ~~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~-~--~~---~lKvIl 128 (221)
T PRK00507 55 GSDVKVCTVIGFPLGANTTAVKAFEAKDAIANGADEIDMVINIGALKSGDWDAVEADIRAVVEAA-G--GA---VLKVII 128 (221)
T ss_pred CCCCeEEEEecccCCCChHHHHHHHHHHHHHcCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhc-C--Cc---eEEEEe
Confidence 345888888877776777777788889999999975 577663 357999998887544321 1 11 112211
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCCEEEEeccc-----ccccccc---ccCcccCcccccc
Q 006203 293 IAENLSWEVFRDTLIEQAEQGVDYFTIHAGV-----LLRYIPL---TAKRMTGIVSRGG 343 (657)
Q Consensus 293 ~~~~lt~e~~~d~ieeQAeqGVDf~TIHaGv-----~~~~v~~---~~~RvtgIVSRGG 343 (657)
..-+||.+++.+..+--.+-|+||+-.=.|. +.+.+.+ ..+.-+||..-||
T Consensus 129 Et~~L~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~~~~~~IKasGG 187 (221)
T PRK00507 129 ETCLLTDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETVGPRVGVKASGG 187 (221)
T ss_pred ecCcCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCCCceEEeeCC
Confidence 1467999999999999999999999886554 4555553 2234467777776
No 139
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=47.94 E-value=39 Score=36.47 Aligned_cols=120 Identities=16% Similarity=0.185 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCC--CccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcC
Q 006203 236 IEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSA--VPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQG 313 (657)
Q Consensus 236 ie~EveKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~nsp--vPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqG 313 (657)
+++=++.++.-+++|||.|-==... +.+++|+ +.++.+ +|+-.+.- |.--.+|.++| ++-|
T Consensus 165 ld~AI~Ra~AY~eAGAD~if~~al~-~~e~i~~-f~~av~~pl~~N~t~~--------g~tp~~~~~~L-------~~~G 227 (289)
T COG2513 165 LDDAIERAQAYVEAGADAIFPEALT-DLEEIRA-FAEAVPVPLPANITEF--------GKTPLLTVAEL-------AELG 227 (289)
T ss_pred HHHHHHHHHHHHHcCCcEEccccCC-CHHHHHH-HHHhcCCCeeeEeecc--------CCCCCcCHHHH-------HhcC
Confidence 8999999999999999999754444 4666654 445554 55443332 22234554443 7889
Q ss_pred CCEEEEeccccccccccccCcccCccccccHHHHHH-HHHcCCcCchhhhHHHHHHHHhHh
Q 006203 314 VDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKW-CLAYHKENFAYEHWDEILDICNQY 373 (657)
Q Consensus 314 VDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~W-ml~h~~ENplY~~FD~ileI~k~Y 373 (657)
|..+.+=.. ..+..-....+...-+.|+|++..-- -+.+.+|+..|.+|++..+.-.++
T Consensus 228 v~~V~~~~~-~~raa~~a~~~~~~~i~~~gt~~~~~d~m~~r~~l~~~~~y~~~~~~~~~~ 287 (289)
T COG2513 228 VKRVSYGLT-AFRAALKAAEQAAREIRREGTQANVLDKMQTRKELYDLINYYDYEAKDDEL 287 (289)
T ss_pred ceEEEECcH-HHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHhhcHHHHHHHHHhh
Confidence 999855433 33333334566777788888653221 123367888888888877665543
No 140
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=47.88 E-value=45 Score=33.47 Aligned_cols=169 Identities=23% Similarity=0.181 Sum_probs=87.8
Q ss_pred eEeeccccCCCCCChHHHHHHHHHHHHhCCCE----eeecCCCCCh---HHHHHHHHhcCCCccccchhhhHHHHhcCcc
Q 006203 222 KVNANIGNSAVASSIEEEVYKVQWATMWGADT----VMDLSTGRHI---HETREWILRNSAVPVGTVPIYQALEKVDGIA 294 (657)
Q Consensus 222 KVNANIGtS~~~~~ie~EveKl~~A~~~GADt----vMDLSTGgdi---~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~ 294 (657)
||.++|= +++...+++|++++ .++|+|. |||-.--.|+ ..+=++|-+.+.+|+-. +=
T Consensus 1 kI~pSil-~ad~~~l~~~i~~l---~~~g~d~lHiDiMDg~fvpn~~~g~~~i~~i~~~~~~~~Dv----------HL-- 64 (201)
T PF00834_consen 1 KISPSIL-SADFLNLEEEIKRL---EEAGADWLHIDIMDGHFVPNLTFGPDIIKAIRKITDLPLDV----------HL-- 64 (201)
T ss_dssp EEEEBGG-GS-GGGHHHHHHHH---HHTT-SEEEEEEEBSSSSSSB-B-HHHHHHHHTTSSSEEEE----------EE--
T ss_pred Ceehhhh-hCCHHHHHHHHHHH---HHcCCCEEEEeecccccCCcccCCHHHHHHHhhcCCCcEEE----------Ee--
Confidence 5666664 45567888888877 5778995 6884443333 23333343334333311 00
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEecccccccccc-----ccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHH
Q 006203 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPL-----TAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDI 369 (657)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~-----~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI 369 (657)
.=-+++. .|++-++.|+|++|+|.--+....+. ..+=-.||+ =|| -|.++.+.++
T Consensus 65 Mv~~P~~---~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~Gia----------------lnP-~T~~~~~~~~ 124 (201)
T PF00834_consen 65 MVENPER---YIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIA----------------LNP-ETPVEELEPY 124 (201)
T ss_dssp ESSSGGG---HHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEE----------------E-T-TS-GGGGTTT
T ss_pred eeccHHH---HHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEE----------------EEC-CCCchHHHHH
Confidence 0012343 44455788999999999744322221 112222333 255 3566777777
Q ss_pred HhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchH
Q 006203 370 CNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIP 431 (657)
Q Consensus 370 ~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~ 431 (657)
+..-|..+=+. .-||.-.-.-.+..+.-+..+-++.+... .++.++|-| -+-.+.|+
T Consensus 125 l~~vD~VlvMs--V~PG~~Gq~f~~~~~~KI~~l~~~~~~~~-~~~~I~vDG--GI~~~~~~ 181 (201)
T PF00834_consen 125 LDQVDMVLVMS--VEPGFGGQKFIPEVLEKIRELRKLIPENG-LDFEIEVDG--GINEENIK 181 (201)
T ss_dssp GCCSSEEEEES--S-TTTSSB--HGGHHHHHHHHHHHHHHHT-CGSEEEEES--SESTTTHH
T ss_pred hhhcCEEEEEE--ecCCCCcccccHHHHHHHHHHHHHHHhcC-CceEEEEEC--CCCHHHHH
Confidence 78889887775 56887665555555555444444443322 556666665 44444443
No 141
>PRK01207 methionine synthase; Provisional
Probab=47.87 E-value=16 Score=39.78 Aligned_cols=91 Identities=23% Similarity=0.245 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhcCCCEEEEeccccc-cccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEec
Q 006203 301 VFRDTLIEQAEQGVDYFTIHAGVLL-RYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSI 379 (657)
Q Consensus 301 ~~~d~ieeQAeqGVDf~TIHaGv~~-~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSL 379 (657)
....+|..|-+.|+|++|+|=++.| +.+.....++-|+...| |.. -||..| |---+=.
T Consensus 38 ai~~~v~~Qe~aGlDiv~~dGe~~R~dmv~~f~~~l~G~~~~g------~vr----------~y~~~~-----~r~Pii~ 96 (343)
T PRK01207 38 ATLETLDVFENAGLDNIGIGGEMFRWEMYEHPAERIKGIIFYG------MVR----------SFDNRY-----YRKGSII 96 (343)
T ss_pred HHHHHHHHHHHcCCCEEeeCCcEeechHHHHHHHhcCCeEecC------eEE----------Eecccc-----ccCCeEE
Confidence 4668999999999999999999944 55566788999987632 321 122211 3333444
Q ss_pred cCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCC
Q 006203 380 GDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPG 423 (657)
Q Consensus 380 GDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPG 423 (657)
||==|++. --+.|+.-.-+|++ +.|++|+-||=
T Consensus 97 g~i~~~~~-------~~v~e~~~a~~~t~----kpvK~~ltGP~ 129 (343)
T PRK01207 97 DRMERRSS-------FHLDEVEFVADNTK----KPIKVPITGPY 129 (343)
T ss_pred eeccCCCC-------CcHHHHHHHHHccC----CCcEEEecCHH
Confidence 55444332 23555555555544 89999999973
No 142
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=47.56 E-value=1.1e+02 Score=27.30 Aligned_cols=112 Identities=15% Similarity=0.220 Sum_probs=65.0
Q ss_pred HHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCC--HHHHHHHHHHHHhcCCCEEEEecc
Q 006203 245 WATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLS--WEVFRDTLIEQAEQGVDYFTIHAG 322 (657)
Q Consensus 245 ~A~~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt--~e~~~d~ieeQAeqGVDf~TIHaG 322 (657)
.-.++|..+|.+|....... ....+-.=.+|+... ...++. .+...+.|++..++|- =+-|||-
T Consensus 21 ~l~~~gi~~Vi~l~~~~~~~-------~~~~~~~~~ipi~D~------~~~~~~~~~~~~~~~i~~~~~~~~-~VlVHC~ 86 (138)
T smart00195 21 LLKKLGITHVINVTNEVPNL-------NKKGFTYLGVPILDN------TETKISPYFPEAVEFIEDAEKKGG-KVLVHCQ 86 (138)
T ss_pred HHHHcCCCEEEEccCCCCCC-------CCCCCEEEEEECCCC------CCCChHHHHHHHHHHHHHHhcCCC-eEEEECC
Confidence 34457999999997765421 122344444555441 111221 2444555666555664 3668993
Q ss_pred ccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHH
Q 006203 323 VLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLT 402 (657)
Q Consensus 323 v~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~ 402 (657)
.| +||.|++++.|++....- .+++-++..+ ..||+..-. ..|+..|..
T Consensus 87 ---------~G-----~~RS~~v~~~yl~~~~~~-----~~~~A~~~v~----------~~R~~~~p~---~~~~~qL~~ 134 (138)
T smart00195 87 ---------AG-----VSRSATLIIAYLMKYRNL-----SLNDAYDFVK----------DRRPIISPN---FGFLRQLIE 134 (138)
T ss_pred ---------CC-----CchHHHHHHHHHHHHhCC-----CHHHHHHHHH----------HHCCccCCC---HhHHHHHHH
Confidence 22 589999999998876553 3566666666 357655543 345555543
No 143
>TIGR02033 D-hydantoinase D-hydantoinase. This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme.
Probab=47.23 E-value=3.9e+02 Score=28.70 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=14.5
Q ss_pred HHHHHHhCCCEeeecCCC
Q 006203 243 VQWATMWGADTVMDLSTG 260 (657)
Q Consensus 243 l~~A~~~GADtvMDLSTG 260 (657)
.+.|++.|.-||+|....
T Consensus 77 s~~a~~~GvTtv~d~~~~ 94 (454)
T TIGR02033 77 TKAAAAGGTTTIIDFALP 94 (454)
T ss_pred HHHHHhCCCCEEEeCcCC
Confidence 356889999999997643
No 144
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=46.76 E-value=3e+02 Score=27.42 Aligned_cols=64 Identities=11% Similarity=0.074 Sum_probs=44.4
Q ss_pred hHHHHHHHHhHhceeEec-c---CCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCC
Q 006203 362 HWDEILDICNQYDVALSI-G---DGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIP 426 (657)
Q Consensus 362 ~FD~ileI~k~YDVtlSL-G---DGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVP 426 (657)
..++|-+.+++|+++++. + +++ |-.+.+..++..-+.+..+-...+.|.+.|+.+|+=.|||..
T Consensus 48 ~~~~l~~~~~~~gl~v~s~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~ 115 (275)
T PRK09856 48 GIKQIKALAQTYQMPIIGYTPETNGY-PYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAG 115 (275)
T ss_pred HHHHHHHHHHHcCCeEEEecCcccCc-CccccCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCC
Confidence 468899999999999854 2 222 333444333322233566778889999999999999999853
No 145
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=46.67 E-value=1.4e+02 Score=29.55 Aligned_cols=64 Identities=9% Similarity=-0.072 Sum_probs=42.2
Q ss_pred hHHHHHHHHhHhceeEecc-CCC------CCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCC
Q 006203 362 HWDEILDICNQYDVALSIG-DGL------RPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPM 427 (657)
Q Consensus 362 ~FD~ileI~k~YDVtlSLG-DGL------RPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl 427 (657)
..++|.+.+++|+++++.- ..+ +.|...+..+...+. ..+-+..+.|.+.|+.++.=.+|..|-
T Consensus 40 ~~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~a~~lg~~~i~~~~g~~~~ 110 (254)
T TIGR03234 40 DAEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGREEEFR--EGVALAIAYARALGCPQVNCLAGKRPA 110 (254)
T ss_pred CHHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCccHHHHH--HHHHHHHHHHHHhCCCEEEECcCCCCC
Confidence 5799999999999998743 111 222222333333332 345578999999999988777887653
No 146
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.53 E-value=40 Score=36.24 Aligned_cols=64 Identities=31% Similarity=0.361 Sum_probs=41.4
Q ss_pred HHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 006203 240 VYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTI 319 (657)
Q Consensus 240 veKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGVDf~TI 319 (657)
++-+..|+++|||.|| | ..-+.+++++.+-..- +.+. + ++-|.+. .+.|.+-|+-||||+.+
T Consensus 215 leea~eA~~aGaDiIm-L-Dnmspe~l~~av~~~~----~~~~----l-EaSGGIt-------~~ni~~yA~tGVD~IS~ 276 (294)
T PRK06978 215 LAQLETALAHGAQSVL-L-DNFTLDMMREAVRVTA----GRAV----L-EVSGGVN-------FDTVRAFAETGVDRISI 276 (294)
T ss_pred HHHHHHHHHcCCCEEE-E-CCCCHHHHHHHHHhhc----CCeE----E-EEECCCC-------HHHHHHHHhcCCCEEEe
Confidence 5567778999999998 3 3446777777663221 1221 2 2223322 47888889999999876
Q ss_pred ec
Q 006203 320 HA 321 (657)
Q Consensus 320 Ha 321 (657)
=+
T Consensus 277 ga 278 (294)
T PRK06978 277 GA 278 (294)
T ss_pred Cc
Confidence 43
No 147
>PRK06354 pyruvate kinase; Provisional
Probab=46.25 E-value=1.2e+02 Score=35.64 Aligned_cols=97 Identities=22% Similarity=0.250 Sum_probs=61.0
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCEEEEecccccccccc-------ccCcccCccccccHHHHHHHHHcCCcCc-hhhhHHH
Q 006203 294 AENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPL-------TAKRMTGIVSRGGSIHAKWCLAYHKENF-AYEHWDE 365 (657)
Q Consensus 294 ~~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~-------~~~RvtgIVSRGGSi~a~Wml~h~~ENp-lY~~FD~ 365 (657)
...||+.|..| |.--+++||||+.+=.==+.+.+.. ..++-+.|++. =|++ -.+++|+
T Consensus 173 ~p~ltekD~~d-i~f~~~~~vD~ia~SFVr~~~dv~~~r~~l~~~~~~~~~iiaK-------------IEt~eav~nlde 238 (590)
T PRK06354 173 LPAITEKDRED-LIFGLEQGVDWIALSFVRNPSDVLEIRELIEEHNGKHIPIIAK-------------IEKQEAIDNIDA 238 (590)
T ss_pred CCCCCHHHHHH-HHHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEE-------------ECCHHHHHhHHH
Confidence 45689999888 6777899999998765323333321 11222223221 2332 3677888
Q ss_pred HHHHH-----hHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe
Q 006203 366 ILDIC-----NQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN 419 (657)
Q Consensus 366 ileI~-----k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMI 419 (657)
|++.+ .+.|..+++| ...+.+ .+-++.+.|+++|+.|++
T Consensus 239 I~~~~DgImVaRGDLgve~g-------------~e~v~~--~qk~ii~~~~~~gkpvI~ 282 (590)
T PRK06354 239 ILELCDGLMVARGDLGVEIP-------------AEEVPL--LQKRLIKKANRLGKPVIT 282 (590)
T ss_pred HHHhcCEEEEccchhhcccC-------------cHHHHH--HHHHHHHHHHHcCCCEEE
Confidence 88873 3566667777 223333 667899999999999986
No 148
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=46.15 E-value=2.2e+02 Score=28.47 Aligned_cols=86 Identities=13% Similarity=0.074 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEec--
Q 006203 302 FRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSI-- 379 (657)
Q Consensus 302 ~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSL-- 379 (657)
|-++|++-++.|.|.+=+.. |+...-+++.+.+++|++.+|.
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~------------------------------------~~~~~~~~~~~~l~~~gl~~~~~~ 60 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMF------------------------------------PYDYDIEELKQVLASNKLEHTLHN 60 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcC------------------------------------CCCCCHHHHHHHHHHcCCcEEEEc
Confidence 55667777888988887710 1223588999999999999984
Q ss_pred -c-CCCCCCC----ccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCC
Q 006203 380 -G-DGLRPGS----IYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIP 426 (657)
Q Consensus 380 -G-DGLRPG~----i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVP 426 (657)
+ .++.+++ ..++ +.++.. ..+-+..+.|.+.|+.+++=-+|..|
T Consensus 61 ~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~i~~a~~lga~~i~~~~g~~~ 110 (258)
T PRK09997 61 LPAGDWAAGERGIACIPG-REEEFR--DGVAAAIRYARALGNKKINCLVGKTP 110 (258)
T ss_pred CCCCccccCcCccccCCC-cHHHHH--HHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 1 1223332 3333 444433 34568889999999997765556544
No 149
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=46.07 E-value=96 Score=30.34 Aligned_cols=59 Identities=12% Similarity=0.001 Sum_probs=32.3
Q ss_pred HHHHhcCCCEEEEecccccccccc------ccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHh
Q 006203 307 IEQAEQGVDYFTIHAGVLLRYIPL------TAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQY 373 (657)
Q Consensus 307 eeQAeqGVDf~TIHaGv~~~~v~~------~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~Y 373 (657)
+.-++.|+|++|+|+-...+.+.. ..+.-.|++- .+- .-....++-+++|.++.++.+-
T Consensus 74 ~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~-------~~~-~~~~~~~~~~~~~~v~~m~~e~ 138 (215)
T PRK13813 74 EAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVV-------EMS-HPGALEFIQPHADKLAKLAQEA 138 (215)
T ss_pred HHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEE-------eCC-CCCCCCCHHHHHHHHHHHHHHh
Confidence 555678999999999754343331 2244555543 110 0011123335678888877764
No 150
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=45.86 E-value=3.7e+02 Score=27.95 Aligned_cols=87 Identities=16% Similarity=0.129 Sum_probs=45.6
Q ss_pred CceeEeeccccCCCCCChHHHHHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCC
Q 006203 219 FLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLS 298 (657)
Q Consensus 219 l~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt 298 (657)
-++.++++++. .+.++-++.++.+.+.|-+ .+++-.|++.++..+.|- ..--.+|.++| ..+++ ...+
T Consensus 122 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~Gf~-~iKik~g~~~~~d~~~v~-~lr~~~g~~~l---~vD~n---~~~~ 189 (316)
T cd03319 122 RPLETDYTISI----DTPEAMAAAAKKAAKRGFP-LLKIKLGGDLEDDIERIR-AIREAAPDARL---RVDAN---QGWT 189 (316)
T ss_pred CCceeEEEEeC----CCHHHHHHHHHHHHHcCCC-EEEEEeCCChhhHHHHHH-HHHHhCCCCeE---EEeCC---CCcC
Confidence 34445555542 3566656777777788954 456666766544332221 11000112332 11222 2355
Q ss_pred HHHHHHHHHHHHhcCCCEE
Q 006203 299 WEVFRDTLIEQAEQGVDYF 317 (657)
Q Consensus 299 ~e~~~d~ieeQAeqGVDf~ 317 (657)
.++.++.+..-.+.|++|+
T Consensus 190 ~~~A~~~~~~l~~~~l~~i 208 (316)
T cd03319 190 PEEAVELLRELAELGVELI 208 (316)
T ss_pred HHHHHHHHHHHHhcCCCEE
Confidence 6777777666667788888
No 151
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=45.13 E-value=85 Score=33.35 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEecc
Q 006203 300 EVFRDTLIEQAEQGVDYFTIHAG 322 (657)
Q Consensus 300 e~~~d~ieeQAeqGVDf~TIHaG 322 (657)
+++.+.+..-.+.|+|++|||..
T Consensus 149 ~~~~~~a~~le~~G~d~i~vh~r 171 (321)
T PRK10415 149 RNCVEIAQLAEDCGIQALTIHGR 171 (321)
T ss_pred chHHHHHHHHHHhCCCEEEEecC
Confidence 34555555556789999999973
No 152
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=44.93 E-value=58 Score=34.60 Aligned_cols=175 Identities=18% Similarity=0.226 Sum_probs=84.7
Q ss_pred ChHHHHHHHHHHHHhCCCEe-eecCC--------CCCh----HHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHH
Q 006203 235 SIEEEVYKVQWATMWGADTV-MDLST--------GRHI----HETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEV 301 (657)
Q Consensus 235 ~ie~EveKl~~A~~~GADtv-MDLST--------Ggdi----~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~ 301 (657)
+.++=.+=++.+.++|||.| +.+|. |.++ .++=+++.+...+ |+. .|... ++ ++
T Consensus 110 ~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~i-----Pv~---vKl~p---~~--~~ 176 (325)
T cd04739 110 SAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTI-----PVA---VKLSP---FF--SA 176 (325)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCC-----CEE---EEcCC---Cc--cC
Confidence 44444455666678899987 33442 1122 3344445444443 332 12211 12 23
Q ss_pred HHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccC
Q 006203 302 FRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGD 381 (657)
Q Consensus 302 ~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSLGD 381 (657)
+.+....-.+.|+|.+++|-.+....+.....+. +-.|| +.-...-|+ -.+-+-++.+..++.|.-
T Consensus 177 ~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~---~~~~g-------lSG~~~~~~--al~~v~~v~~~~~ipIig-- 242 (325)
T cd04739 177 LAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEV---VPNLL-------LSSPAEIRL--PLRWIAILSGRVKASLAA-- 242 (325)
T ss_pred HHHHHHHHHHcCCCeEEEEcCcCCCCccccccce---ecCCC-------cCCccchhH--HHHHHHHHHcccCCCEEE--
Confidence 4444444446699999999975433333211111 11122 111111121 123344555555666543
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeE----EeeCCCCCCCCchHHHHHHHHH-hcCCCCccccCcccccc
Q 006203 382 GLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQV----MNEGPGHIPMHKIPENMQKQLE-WCNEAPFYTLGPLTTDI 456 (657)
Q Consensus 382 GLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQV----MIEGPGHVPl~~I~~Nv~lqk~-lC~~APfYvLGPLvTDI 456 (657)
-|-|.++.|..++-. |-...||| |.+||+-++ .|..+.+ +..
T Consensus 243 ---~GGI~s~~Da~e~l~----------aGA~~Vqv~ta~~~~gp~~~~------~i~~~L~~~l~-------------- 289 (325)
T cd04739 243 ---SGGVHDAEDVVKYLL----------AGADVVMTTSALLRHGPDYIG------TLLAGLEAWME-------------- 289 (325)
T ss_pred ---ECCCCCHHHHHHHHH----------cCCCeeEEehhhhhcCchHHH------HHHHHHHHHHH--------------
Confidence 356677777655431 34555665 567887332 2222111 111
Q ss_pred CCCchhHHHhHHH
Q 006203 457 APGYDHITSAIGA 469 (657)
Q Consensus 457 ApGYDHITsAIGa 469 (657)
.-||.+|.-++|.
T Consensus 290 ~~g~~~i~e~~G~ 302 (325)
T cd04739 290 EHGYESVQQLRGS 302 (325)
T ss_pred HcCCCCHHHHhcc
Confidence 4688999999994
No 153
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=44.70 E-value=44 Score=35.97 Aligned_cols=64 Identities=34% Similarity=0.445 Sum_probs=40.2
Q ss_pred HHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 006203 240 VYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTI 319 (657)
Q Consensus 240 veKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGVDf~TI 319 (657)
++-+..|+++|||-|| |=+- +..++++.+-... +.+ +.++-|.+ | .+.|++-|+-||||+.+
T Consensus 218 leea~ea~~~gaDiI~-LDn~-s~e~~~~av~~~~----~~~-----~ieaSGGI---~----~~ni~~yA~tGVD~Is~ 279 (296)
T PRK09016 218 LDELDQALKAGADIIM-LDNF-TTEQMREAVKRTN----GRA-----LLEVSGNV---T----LETLREFAETGVDFISV 279 (296)
T ss_pred HHHHHHHHHcCCCEEE-eCCC-ChHHHHHHHHhhc----CCe-----EEEEECCC---C----HHHHHHHHhcCCCEEEe
Confidence 4556678999999998 4333 4677777664321 122 12222332 2 47888889999999976
Q ss_pred ec
Q 006203 320 HA 321 (657)
Q Consensus 320 Ha 321 (657)
=+
T Consensus 280 ga 281 (296)
T PRK09016 280 GA 281 (296)
T ss_pred Cc
Confidence 44
No 154
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=44.48 E-value=15 Score=38.59 Aligned_cols=124 Identities=21% Similarity=0.244 Sum_probs=62.9
Q ss_pred HHHHHHHHHhCCCEee-ecCC---CCChHHHHHHH--HhcCCCc----cccchhhhHHHHhcC-ccCCCCHHHHHHHHHH
Q 006203 240 VYKVQWATMWGADTVM-DLST---GRHIHETREWI--LRNSAVP----VGTVPIYQALEKVDG-IAENLSWEVFRDTLIE 308 (657)
Q Consensus 240 veKl~~A~~~GADtvM-DLST---Ggdi~~~R~~I--l~nspvP----VGTVPIYqA~~k~~g-~~~~lt~e~~~d~iee 308 (657)
++.++.|++.|.+.|| |-|. -.++..+|+-+ .+...++ +|+++ .+- ....| ...-=+.|+..+.++
T Consensus 87 ~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~g-g~e-d~~~g~~~~~t~~eea~~f~~- 163 (282)
T TIGR01859 87 YESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLG-GIE-DGVDEKEAELADPDEAEQFVK- 163 (282)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCc-Ccc-ccccccccccCCHHHHHHHHH-
Confidence 5788899999999998 3333 33333333322 1111121 23333 000 00000 001114555444443
Q ss_pred HHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEec--cCCCCCC
Q 006203 309 QAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSI--GDGLRPG 386 (657)
Q Consensus 309 QAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSL--GDGLRPG 386 (657)
+.||||+++=.|-.-..-+ + .|-+ .||.|=+|+++.+|-|-+ |+|+-
T Consensus 164 --~tgvD~Lavs~Gt~hg~~~-------~-------------------~~~l-~~e~L~~i~~~~~iPlv~hGgSGi~-- 212 (282)
T TIGR01859 164 --ETGVDYLAAAIGTSHGKYK-------G-------------------EPGL-DFERLKEIKELTNIPLVLHGASGIP-- 212 (282)
T ss_pred --HHCcCEEeeccCccccccC-------C-------------------CCcc-CHHHHHHHHHHhCCCEEEECCCCCC--
Confidence 3599999976553211100 0 1222 388888888888887766 56763
Q ss_pred CccCCCcHHHHHHHHHHH
Q 006203 387 SIYDANDTAQFAELLTQG 404 (657)
Q Consensus 387 ~i~DA~D~AQ~~EL~~LG 404 (657)
..++.+++..|
T Consensus 213 -------~e~i~~~i~~G 223 (282)
T TIGR01859 213 -------EEQIKKAIKLG 223 (282)
T ss_pred -------HHHHHHHHHcC
Confidence 34666665543
No 155
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=44.25 E-value=1.3e+02 Score=31.69 Aligned_cols=130 Identities=18% Similarity=0.186 Sum_probs=67.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccc---cccc---ccc--ccCcccCccccccHHHHHHHHHcCCcCchhhhHHHH
Q 006203 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGV---LLRY---IPL--TAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEI 366 (657)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDf~TIHaGv---~~~~---v~~--~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~i 366 (657)
.+|+.|++++.+++ -|+-.++|+-|= ..+. ++. ..+..+.|++-| .++.+ ..+++
T Consensus 57 ~~ls~ee~~~~i~e---~g~~~V~i~GGEPLL~pdl~eiv~~~~~~g~~v~l~TNG-~ll~~-------------~~~~l 119 (318)
T TIGR03470 57 QRLSVEECLRAVDE---CGAPVVSIPGGEPLLHPEIDEIVRGLVARKKFVYLCTNA-LLLEK-------------KLDKF 119 (318)
T ss_pred cCCCHHHHHHHHHH---cCCCEEEEeCccccccccHHHHHHHHHHcCCeEEEecCc-eehHH-------------HHHHH
Confidence 46899999888775 488888887662 2221 111 113345566554 22211 12222
Q ss_pred HHHHhHhceeEeccCCCCCCCccCCCcH--HHHHHHHHHHHHHHHHHhcCCeEEeeC---CCCCCCCchHHHHHHHHHhc
Q 006203 367 LDICNQYDVALSIGDGLRPGSIYDANDT--AQFAELLTQGELTRRAWDKDVQVMNEG---PGHIPMHKIPENMQKQLEWC 441 (657)
Q Consensus 367 leI~k~YDVtlSLGDGLRPG~i~DA~D~--AQ~~EL~~LGEL~krA~e~gVQVMIEG---PGHVPl~~I~~Nv~lqk~lC 441 (657)
.+ ..-..|.+|| ||++ ..+|..-. --|+. .-+-.+.+.++|++|.|.= ++ .-+++|.+-+++-+++
T Consensus 120 ~~-~~~~~i~VSL-DG~~--e~hd~~~~~~g~f~~---~l~~I~~l~~~G~~v~v~~tv~~~-~n~~ei~~~~~~~~~l- 190 (318)
T TIGR03470 120 EP-SPYLTFSVHL-DGLR--EHHDASVCREGVFDR---AVEAIREAKARGFRVTTNTTLFND-TDPEEVAEFFDYLTDL- 190 (318)
T ss_pred Hh-CCCcEEEEEE-ecCc--hhhchhhcCCCcHHH---HHHHHHHHHHCCCcEEEEEEEeCC-CCHHHHHHHHHHHHHc-
Confidence 11 0112377888 8864 56665311 11222 3355566667788766531 22 3456777777776664
Q ss_pred CCCCccccCc
Q 006203 442 NEAPFYTLGP 451 (657)
Q Consensus 442 ~~APfYvLGP 451 (657)
|.-.+.+-|
T Consensus 191 -Gv~~i~i~p 199 (318)
T TIGR03470 191 -GVDGMTISP 199 (318)
T ss_pred -CCCEEEEec
Confidence 444444443
No 156
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=44.23 E-value=81 Score=33.42 Aligned_cols=87 Identities=17% Similarity=0.129 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHh--
Q 006203 296 NLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQY-- 373 (657)
Q Consensus 296 ~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~Y-- 373 (657)
+++.+++.+....-.+.|+|++++|..+.... ... +...-...|| + .+.. -.+..++.+-++.+..
T Consensus 212 ~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~-~~~--~~~~~~~~gG-~-------sG~~-~~~~~l~~v~~l~~~~~~ 279 (327)
T cd04738 212 DLSDEELEDIADVALEHGVDGIIATNTTISRP-GLL--RSPLANETGG-L-------SGAP-LKERSTEVLRELYKLTGG 279 (327)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEECCccccc-ccc--cccccCCCCc-c-------CChh-hhHHHHHHHHHHHHHhCC
Confidence 45667887777776778999999998653211 000 1011111122 0 0010 0124456677777777
Q ss_pred ceeEeccCCCCCCCccCCCcHHHHHHHHH
Q 006203 374 DVALSIGDGLRPGSIYDANDTAQFAELLT 402 (657)
Q Consensus 374 DVtlSLGDGLRPG~i~DA~D~AQ~~EL~~ 402 (657)
++.+.---|++- ..+..|++.
T Consensus 280 ~ipIi~~GGI~t--------~~da~e~l~ 300 (327)
T cd04738 280 KIPIIGVGGISS--------GEDAYEKIR 300 (327)
T ss_pred CCcEEEECCCCC--------HHHHHHHHH
Confidence 777776666753 345556554
No 157
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=44.19 E-value=1.8e+02 Score=29.00 Aligned_cols=91 Identities=12% Similarity=0.029 Sum_probs=57.3
Q ss_pred hhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHH-HHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHH
Q 006203 360 YEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAEL-LTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQL 438 (657)
Q Consensus 360 Y~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL-~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk 438 (657)
.++|.+++++|++.++..=.--|.+.. .... +...+.++ ..|.+|+++|.++||.+.+|-=+.-=++...+-.++.+
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~~~~-~~~~-~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~~~~~~~~~~~~~l~~ 170 (284)
T PRK13210 93 LEIMKKAIRLAQDLGIRTIQLAGYDVY-YEEK-SEETRQRFIEGLAWAVEQAAAAQVMLAVEIMDTPFMNSISKWKKWDK 170 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCcccc-cccc-cHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCccccCCHHHHHHHHH
Confidence 577999999999988765332222111 1111 23344443 45789999999999999999832222566677777777
Q ss_pred HhcCCCCccccCccccccC
Q 006203 439 EWCNEAPFYTLGPLTTDIA 457 (657)
Q Consensus 439 ~lC~~APfYvLGPLvTDIA 457 (657)
.+- .|- +| +.=|++
T Consensus 171 ~v~--~~~--~~-~~~D~~ 184 (284)
T PRK13210 171 EID--SPW--LT-VYPDVG 184 (284)
T ss_pred HcC--CCc--ee-EEecCC
Confidence 763 353 44 445665
No 158
>PRK13207 ureC urease subunit alpha; Reviewed
Probab=43.79 E-value=87 Score=36.56 Aligned_cols=103 Identities=22% Similarity=0.287 Sum_probs=61.7
Q ss_pred HHHHHHhCCCEeeecCCCCCh-----------HHHHHH--HHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHH
Q 006203 243 VQWATMWGADTVMDLSTGRHI-----------HETREW--ILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQ 309 (657)
Q Consensus 243 l~~A~~~GADtvMDLSTGgdi-----------~~~R~~--Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQ 309 (657)
.+.|+.-|--||+|.-+|.+- ..+++. ..+++++.+|-.- .+ +..-++.|++|
T Consensus 144 ~~aALagGVTTVi~mg~gP~~gt~~~t~tpG~~~l~~~l~~a~~~pin~g~~g--------~g------~~~~~~~L~e~ 209 (568)
T PRK13207 144 IEEALASGVTTMIGGGTGPATGTNATTCTPGPWHIHRMLQAADAFPMNIGFLG--------KG------NASLPEALEEQ 209 (568)
T ss_pred HHHHHcCCCCEEEcCCcCCccCCcccccccchHHHHHHHHHhhcCCceEEEEc--------CC------CcccHHHHHHH
Confidence 378999999999997655320 111111 1122233222110 01 12235778899
Q ss_pred HhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCcc
Q 006203 310 AEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIY 389 (657)
Q Consensus 310 AeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~ 389 (657)
.++|+++|-+|..- | -+ ...++++|+.+++||+.+.+ =+
T Consensus 210 i~aGA~gfKi~~d~-------------------g------------~t--~~~l~~aL~~A~~~gv~V~i--------Ha 248 (568)
T PRK13207 210 IEAGAIGLKLHEDW-------------------G------------AT--PAAIDNCLSVADEYDVQVAI--------HT 248 (568)
T ss_pred HHcCCCEEeecCCC-------------------C------------CC--HHHHHHHHHHHHHhCCEEEE--------eC
Confidence 99999999999310 1 02 36889999999999998874 34
Q ss_pred CCCcHHHHHHH
Q 006203 390 DANDTAQFAEL 400 (657)
Q Consensus 390 DA~D~AQ~~EL 400 (657)
|..+++-|.|.
T Consensus 249 ~tlne~G~~e~ 259 (568)
T PRK13207 249 DTLNESGFVED 259 (568)
T ss_pred CCcccchHHHH
Confidence 44455555555
No 159
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=43.55 E-value=1.5e+02 Score=31.42 Aligned_cols=81 Identities=17% Similarity=0.152 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhCCCEe-----------------eecCC---CCCh-------HHHHHHHHhcC--CCcccc-chhhh
Q 006203 236 IEEEVYKVQWATMWGADTV-----------------MDLST---GRHI-------HETREWILRNS--AVPVGT-VPIYQ 285 (657)
Q Consensus 236 ie~EveKl~~A~~~GADtv-----------------MDLST---Ggdi-------~~~R~~Il~ns--pvPVGT-VPIYq 285 (657)
++.=++-++.|.++|.|-| ..--| ||.| .++=+.|-+.. ..|||- +-.++
T Consensus 153 i~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~ 232 (336)
T cd02932 153 VDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATD 232 (336)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccc
Q ss_pred HHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEecc
Q 006203 286 ALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAG 322 (657)
Q Consensus 286 A~~k~~g~~~~lt~e~~~d~ieeQAeqGVDf~TIHaG 322 (657)
.....++.++.++.+..-.+.||||+.||.|
T Consensus 233 ------~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g 263 (336)
T cd02932 233 ------WVEGGWDLEDSVELAKALKELGVDLIDVSSG 263 (336)
T ss_pred ------cCCCCCCHHHHHHHHHHHHHcCCCEEEECCC
No 160
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=43.30 E-value=11 Score=37.53 Aligned_cols=83 Identities=19% Similarity=0.193 Sum_probs=49.5
Q ss_pred HHHHHHHHhCCCEe-eecCCC----------CChHHHHHHHHhcCCCccccc-hhhhHHHHhcCccCCCCHHHHHHHHHH
Q 006203 241 YKVQWATMWGADTV-MDLSTG----------RHIHETREWILRNSAVPVGTV-PIYQALEKVDGIAENLSWEVFRDTLIE 308 (657)
Q Consensus 241 eKl~~A~~~GADtv-MDLSTG----------gdi~~~R~~Il~nspvPVGTV-PIYqA~~k~~g~~~~lt~e~~~d~iee 308 (657)
+.+..+.+.|.|.| +.++.- .++.++|+++ +...|++-.. |.|--+.......-+-+.+.|.+.|+-
T Consensus 14 ~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~-~~~gl~ls~h~p~~~nl~s~d~~~r~~~~~~l~~~i~~ 92 (273)
T smart00518 14 KAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEAL-KENNIDVSVHAPYLINLASPDKEKVEKSIERLIDEIKR 92 (273)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH-HHcCCCEEEECCceecCCCCCHHHHHHHHHHHHHHHHH
Confidence 46788889999988 222211 2366666664 4445655321 432111110111223345778888888
Q ss_pred HHhcCCCEEEEecccc
Q 006203 309 QAEQGVDYFTIHAGVL 324 (657)
Q Consensus 309 QAeqGVDf~TIHaGv~ 324 (657)
-.+-|.+++++|.|..
T Consensus 93 A~~lGa~~vv~h~g~~ 108 (273)
T smart00518 93 CEELGIKALVFHPGSY 108 (273)
T ss_pred HHHcCCCEEEEccccc
Confidence 8899999999999853
No 161
>PRK03906 mannonate dehydratase; Provisional
Probab=42.93 E-value=1.7e+02 Score=32.50 Aligned_cols=134 Identities=15% Similarity=0.157 Sum_probs=76.3
Q ss_pred ccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCc-C
Q 006203 279 GTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKE-N 357 (657)
Q Consensus 279 GTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~E-N 357 (657)
-+||+-+.+. .++.--+=--|.+.++|+.-++.||..++... .- .+..+..++ .-.-||||-...+-...=.. .
T Consensus 63 Es~pv~~~Ik-~g~~~rd~~ie~y~~sirnlg~~GI~~icYnf-mp--v~dwtrt~l-~~~~~~ga~~l~f~~~~~~~~~ 137 (385)
T PRK03906 63 ESVPVHEDIK-TGTPNRDRYIENYKQTLRNLAAAGIKVVCYNF-MP--VFDWTRTDL-AYELPDGSTALRFDQIDFAAFD 137 (385)
T ss_pred eCCCccHHHH-cCCCCHHHHHHHHHHHHHHHHhcCCcEEEecC-cc--cccccCccc-cccCCCCchhhhcchhhHhhcC
Confidence 4556656543 33322333346788999999999999998776 21 122222222 24468999877763332221 1
Q ss_pred c-------------------hhhhHHHHHHHH-hHhceeEeccCCCCCCCc--------------cCCCcHHHHHHH--H
Q 006203 358 F-------------------AYEHWDEILDIC-NQYDVALSIGDGLRPGSI--------------YDANDTAQFAEL--L 401 (657)
Q Consensus 358 p-------------------lY~~FD~ileI~-k~YDVtlSLGDGLRPG~i--------------~DA~D~AQ~~EL--~ 401 (657)
| -.+.|+..++.. .+-..++=+ +| ||.- +..-|+.|.-|- .
T Consensus 138 ~~~l~~~~~~~~~~~~~~~~a~~~f~~~~~~~~~~L~~~~i~--~l-pG~~~~~~~~~~~~~~~~y~~i~~e~lw~~l~~ 214 (385)
T PRK03906 138 PHILKRPGAEADYGEEEIAQAAARFAAMSEEDKARLTRNIIA--GL-PGWEEPYTLEQFRALLELYKDIDEEKLRENLAY 214 (385)
T ss_pred HHHhcccchhhcCCHHHHHHHHHHHHhCCHHHHHHhhccEEE--eC-CCCCccccHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 1 123444554442 222222211 22 6643 444566666554 3
Q ss_pred HHHHHHHHHHhcCCeEEee
Q 006203 402 TQGELTRRAWDKDVQVMNE 420 (657)
Q Consensus 402 ~LGEL~krA~e~gVQVMIE 420 (657)
.|.+++..|.++||++-||
T Consensus 215 fL~~v~p~Aee~GV~Laih 233 (385)
T PRK03906 215 FLKAIIPVAEEVGVKMAIH 233 (385)
T ss_pred HHHHHHHHHHHcCCEEEEe
Confidence 5899999999999999999
No 162
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=42.66 E-value=1.4e+02 Score=34.04 Aligned_cols=97 Identities=22% Similarity=0.132 Sum_probs=60.1
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccc------cCcccCccccccHHHHHHHHHcCCcC-chhhhHHHH
Q 006203 294 AENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLT------AKRMTGIVSRGGSIHAKWCLAYHKEN-FAYEHWDEI 366 (657)
Q Consensus 294 ~~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~------~~RvtgIVSRGGSi~a~Wml~h~~EN-plY~~FD~i 366 (657)
...||+.|..| |.--++.||||+.+=.==+.+.+... .++-+.|+.. =|+ --++++|+|
T Consensus 169 ~p~ltekD~~d-i~f~~~~~vD~ia~SFV~~~~di~~~r~~l~~~~~~~~iiak-------------IEt~~av~nldeI 234 (480)
T cd00288 169 LPALSEKDKAD-LRFGVEQGVDMIFASFVRKASDVLEIREVLGEKGKDIKIIAK-------------IENQEGVNNFDEI 234 (480)
T ss_pred CCCCCHHHHHH-HHHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEE-------------ECCHHHHHhHHHH
Confidence 45588888776 66778999999987653233333311 1222223221 133 236788888
Q ss_pred HHHH-----hHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe
Q 006203 367 LDIC-----NQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN 419 (657)
Q Consensus 367 leI~-----k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMI 419 (657)
++.+ .+.|..+++|. ..+.+ .+.++.+.|+++|+.|++
T Consensus 235 ~~~~DgImIargDLg~e~g~-------------~~v~~--~qk~ii~~~~~~gkpvi~ 277 (480)
T cd00288 235 LEASDGIMVARGDLGVEIPA-------------EEVFL--AQKMLIAKCNLAGKPVIT 277 (480)
T ss_pred HHhcCEEEECcchhhhhcCh-------------HHHHH--HHHHHHHHHHHcCCCEEE
Confidence 8863 35667777771 22222 567799999999999886
No 163
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=42.65 E-value=73 Score=34.54 Aligned_cols=78 Identities=22% Similarity=0.162 Sum_probs=51.5
Q ss_pred CChHHHHHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCC-cc------ccchhhhHHHHhcCccCCCCHHHHHHHH
Q 006203 234 SSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAV-PV------GTVPIYQALEKVDGIAENLSWEVFRDTL 306 (657)
Q Consensus 234 ~~ie~EveKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~nspv-PV------GTVPIYqA~~k~~g~~~~lt~e~~~d~i 306 (657)
.|++.=.+=.+.|.++|||+|=- -|- ..+. -+.++.+- +. ...++|+-+++ ..|++|.+....
T Consensus 13 Gdl~~A~~lI~~A~~aGadaVKf-Qt~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~e~~~~L~ 82 (329)
T TIGR03569 13 GSLELAKKLVDAAAEAGADAVKF-QTF-KAED---LVSKNAPKAEYQKINTGAEESQLEMLKK-----LELSEEDHRELK 82 (329)
T ss_pred CcHHHHHHHHHHHHHhCCCEEEe-eeC-CHHH---hhCcccccccccccCCcCCCcHHHHHHH-----hCCCHHHHHHHH
Confidence 36676677788999999999842 221 1111 11222111 00 23578998877 459999999988
Q ss_pred HHHHhcCCCEEEEec
Q 006203 307 IEQAEQGVDYFTIHA 321 (657)
Q Consensus 307 eeQAeqGVDf~TIHa 321 (657)
+..-+.|++|||==.
T Consensus 83 ~~~~~~Gi~~~stpf 97 (329)
T TIGR03569 83 EYCESKGIEFLSTPF 97 (329)
T ss_pred HHHHHhCCcEEEEeC
Confidence 888899999998543
No 164
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=42.56 E-value=41 Score=34.35 Aligned_cols=76 Identities=20% Similarity=0.208 Sum_probs=50.9
Q ss_pred CChHHHHHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcC
Q 006203 234 SSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQG 313 (657)
Q Consensus 234 ~~ie~EveKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqG 313 (657)
.++++=++.++.+.++|||.||=-.- .+.+++++ +.+..+.|+=-.+. -++. .++.++| .+-|
T Consensus 157 ~~~~eai~Ra~ay~~AGAD~v~v~~~-~~~~~~~~-~~~~~~~Pl~~~~~------~~~~--~~~~~~l-------~~lG 219 (243)
T cd00377 157 EGLDEAIERAKAYAEAGADGIFVEGL-KDPEEIRA-FAEAPDVPLNVNMT------PGGN--LLTVAEL-------AELG 219 (243)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCC-CCHHHHHH-HHhcCCCCEEEEec------CCCC--CCCHHHH-------HHCC
Confidence 47899999999999999999995432 26666554 45566666643211 0111 3566665 5669
Q ss_pred CCEEEEecccccc
Q 006203 314 VDYFTIHAGVLLR 326 (657)
Q Consensus 314 VDf~TIHaGv~~~ 326 (657)
|.+++++....+.
T Consensus 220 ~~~v~~~~~~~~~ 232 (243)
T cd00377 220 VRRVSYGLALLRA 232 (243)
T ss_pred CeEEEEChHHHHH
Confidence 9999998865543
No 165
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=42.03 E-value=63 Score=33.72 Aligned_cols=196 Identities=17% Similarity=0.177 Sum_probs=102.3
Q ss_pred CCCChHHHHHHHHHHHHhCCCEe-eecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccC----CCCHHHHHHHH
Q 006203 232 VASSIEEEVYKVQWATMWGADTV-MDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAE----NLSWEVFRDTL 306 (657)
Q Consensus 232 ~~~~ie~EveKl~~A~~~GADtv-MDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~----~lt~e~~~d~i 306 (657)
+..++++|+.|+ +++|||-+ +|.-.|.- -..+.+|- |+-++|.+.-+... .|=.+.=.+.|
T Consensus 15 dfanL~~e~~~~---l~~GadwlHlDVMDg~F----------VpNiT~G~-pvV~slR~~~~~~~ffD~HmMV~~Peq~V 80 (224)
T KOG3111|consen 15 DFANLAAECKKM---LDAGADWLHLDVMDGHF----------VPNITFGP-PVVESLRKHTGADPFFDVHMMVENPEQWV 80 (224)
T ss_pred chHHHHHHHHHH---HHcCCCeEEEeeecccc----------cCCcccch-HHHHHHHhccCCCcceeEEEeecCHHHHH
Confidence 344566666665 67899975 33333310 11234443 67777777533211 11111112456
Q ss_pred HHHHhcCCCEEEEecccccccccc-----ccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccC
Q 006203 307 IEQAEQGVDYFTIHAGVLLRYIPL-----TAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGD 381 (657)
Q Consensus 307 eeQAeqGVDf~TIHaGv~~~~v~~-----~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSLGD 381 (657)
..-|+.|++.||+|+-.+.+..++ ..+=..|++= || =|.-|.|...+..-|++|-.
T Consensus 81 ~~~a~agas~~tfH~E~~q~~~~lv~~ir~~Gmk~G~al----------------kP-gT~Ve~~~~~~~~~D~vLvM-- 141 (224)
T KOG3111|consen 81 DQMAKAGASLFTFHYEATQKPAELVEKIREKGMKVGLAL----------------KP-GTPVEDLEPLAEHVDMVLVM-- 141 (224)
T ss_pred HHHHhcCcceEEEEEeeccCHHHHHHHHHHcCCeeeEEe----------------CC-CCcHHHHHHhhccccEEEEE--
Confidence 777999999999999987763332 2233344432 22 14456666666667776654
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCccccccCCCch
Q 006203 382 GLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYD 461 (657)
Q Consensus 382 GLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGYD 461 (657)
..-||--.-.-=+.++.-... -|++....-||.=|-|-+.-|.
T Consensus 142 tVePGFGGQkFme~mm~KV~~-------lR~kyp~l~ievDGGv~~~ti~------------------------------ 184 (224)
T KOG3111|consen 142 TVEPGFGGQKFMEDMMPKVEW-------LREKYPNLDIEVDGGVGPSTID------------------------------ 184 (224)
T ss_pred EecCCCchhhhHHHHHHHHHH-------HHHhCCCceEEecCCcCcchHH------------------------------
Confidence 345554443332222222222 2355555556555544333221
Q ss_pred hHHHhHHHHHhhhcccceeeecCchhhcCCCChhHHHHHHHHHHHHH
Q 006203 462 HITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKAGVIAYKIAA 508 (657)
Q Consensus 462 HITsAIGaA~aa~~GadfLCYVTPaEHLgLP~~eDVkeGViA~kIAA 508 (657)
. ++-+||+++ |.-.--.+-++..||..++.+..-.|
T Consensus 185 ---~------~a~AGAN~i--VaGsavf~a~d~~~vi~~lr~~v~~a 220 (224)
T KOG3111|consen 185 ---K------AAEAGANMI--VAGSAVFGAADPSDVISLLRNSVEKA 220 (224)
T ss_pred ---H------HHHcCCCEE--EecceeecCCCHHHHHHHHHHHHhhh
Confidence 1 233455543 33333456678888888777765544
No 166
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=41.98 E-value=98 Score=31.54 Aligned_cols=114 Identities=18% Similarity=0.187 Sum_probs=64.7
Q ss_pred cccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcC
Q 006203 278 VGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKEN 357 (657)
Q Consensus 278 VGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~EN 357 (657)
.-.|||=+.+.+ |. ..+.+++...+++-.+-|+|-+.+|.|..+...+.. +.=+++|.+=|+ -.
T Consensus 18 ~~~~aiDh~~l~--gp--~~~~~~~~~~~~~a~~~~~~~v~~~p~~~~~~~~~~-~~~~~~~~~~~~-----------~~ 81 (258)
T TIGR01949 18 TVIVPMDHGVSN--GP--IKGLVDIRKTVNEVAEGGADAVLLHKGIVRRGHRGY-GKDVGLIIHLSA-----------ST 81 (258)
T ss_pred EEEEECCCcccc--CC--CCCcCCHHHHHHHHHhcCCCEEEeCcchhhhccccc-CCCCcEEEEEcC-----------CC
Confidence 345666665543 22 347889989888888889999999999877654432 223445544321 02
Q ss_pred chh------hhHHHHHHHHh----HhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe
Q 006203 358 FAY------EHWDEILDICN----QYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN 419 (657)
Q Consensus 358 plY------~~FD~ileI~k----~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMI 419 (657)
|++ ..++++-+.++ ..++...+|+ .++..++. .+.++.+.|.++|+-++|
T Consensus 82 ~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~~g~---------~~~~~~~~---~~~~i~~~~~~~g~~liv 141 (258)
T TIGR01949 82 SLSPDPNDKRIVTTVEDAIRMGADAVSIHVNVGS---------DTEWEQIR---DLGMIAEICDDWGVPLLA 141 (258)
T ss_pred CCCCCCCcceeeeeHHHHHHCCCCEEEEEEecCC---------chHHHHHH---HHHHHHHHHHHcCCCEEE
Confidence 222 12223333332 2344444331 23344443 466677777888888887
No 167
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=41.95 E-value=37 Score=42.03 Aligned_cols=81 Identities=17% Similarity=0.254 Sum_probs=59.6
Q ss_pred ch-hhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHH
Q 006203 358 FA-YEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQK 436 (657)
Q Consensus 358 pl-Y~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~l 436 (657)
.+ |..++++++.+++.|+++|+--. ++ -.++++.|-++|+.+..|. .+.+.++.
T Consensus 633 ~lDv~D~e~L~~~v~~~DaVIsalP~-------------~~-----H~~VAkaAieaGkHvv~ek-------y~~~e~~~ 687 (1042)
T PLN02819 633 QLDVSDSESLLKYVSQVDVVISLLPA-------------SC-----HAVVAKACIELKKHLVTAS-------YVSEEMSA 687 (1042)
T ss_pred EeecCCHHHHHHhhcCCCEEEECCCc-------------hh-----hHHHHHHHHHcCCCEEECc-------CCHHHHHH
Confidence 44 78889999999999999997532 12 2678899999999999997 44556666
Q ss_pred HHHhcCCCCccccCccccccCCCchhHHH
Q 006203 437 QLEWCNEAPFYTLGPLTTDIAPGYDHITS 465 (657)
Q Consensus 437 qk~lC~~APfYvLGPLvTDIApGYDHITs 465 (657)
..+.|..|-.-++.-.- .+||+|||-+
T Consensus 688 L~e~Ak~AGV~~m~e~G--lDPGid~~lA 714 (1042)
T PLN02819 688 LDSKAKEAGITILCEMG--LDPGIDHMMA 714 (1042)
T ss_pred HHHHHHHcCCEEEECCc--cCHHHHHHHH
Confidence 66667766654444433 8999999654
No 168
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=41.18 E-value=3.4e+02 Score=28.82 Aligned_cols=160 Identities=22% Similarity=0.173 Sum_probs=83.4
Q ss_pred ChHHHHHHHHHHH-HhCCCEeeecCCCCChHHHHHHHHhcCCCcccc--chhhhHHHHhcCccCCCCHHHHHHHHHHHH-
Q 006203 235 SIEEEVYKVQWAT-MWGADTVMDLSTGRHIHETREWILRNSAVPVGT--VPIYQALEKVDGIAENLSWEVFRDTLIEQA- 310 (657)
Q Consensus 235 ~ie~EveKl~~A~-~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGT--VPIYqA~~k~~g~~~~lt~e~~~d~ieeQA- 310 (657)
+.-.-++|+..|+ +.|+-.++-|.-+|--.. -.....|++. ||...........+..||.+++.+.++.-+
T Consensus 79 ~~i~~~~~l~~~vh~~G~~~~~Ql~h~G~~~~-----~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~ 153 (338)
T cd04733 79 EDLEAFREWAAAAKANGALIWAQLNHPGRQSP-----AGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAH 153 (338)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEccCCCcCCC-----ccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHH
Confidence 4556677766555 568888999988763210 0001122332 333211111123467899998888776543
Q ss_pred ------hcCCCEEEEeccc---cccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHh-Hhcee--Ee
Q 006203 311 ------EQGVDYFTIHAGV---LLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICN-QYDVA--LS 378 (657)
Q Consensus 311 ------eqGVDf~TIHaGv---~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k-~YDVt--lS 378 (657)
+.|.|.+-||+|- .-+.+.-..++-++ .-|||+.-..- |..+-.+.|-+-+- ...|. +|
T Consensus 154 aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D--~yGGslenR~r-------f~~EiI~aIR~avG~d~~v~vris 224 (338)
T cd04733 154 AARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTD--EYGGSLENRAR-------LLLEIYDAIRAAVGPGFPVGIKLN 224 (338)
T ss_pred HHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCc--cCCCCHHHHHH-------HHHHHHHHHHHHcCCCCeEEEEEc
Confidence 4799999999983 33333333333333 25999743321 33444444444441 12233 34
Q ss_pred ccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEee
Q 006203 379 IGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNE 420 (657)
Q Consensus 379 LGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIE 420 (657)
.-|.++.|- | ..| .-+++++.-+.||.. ||
T Consensus 225 ~~~~~~~g~-----~---~ee---a~~ia~~Le~~Gvd~-ie 254 (338)
T cd04733 225 SADFQRGGF-----T---EED---ALEVVEALEEAGVDL-VE 254 (338)
T ss_pred HHHcCCCCC-----C---HHH---HHHHHHHHHHcCCCE-EE
Confidence 344444331 2 123 235556666778844 44
No 169
>PRK08417 dihydroorotase; Provisional
Probab=40.30 E-value=70 Score=34.35 Aligned_cols=60 Identities=20% Similarity=0.120 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhh
Q 006203 395 AQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGA 474 (657)
Q Consensus 395 AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGYDHITsAIGaA~aa~ 474 (657)
.-++|...+.+..+-|.+.|.++ +-.|++++=+--++..
T Consensus 176 p~~aE~~~v~~~~~la~~~~~~l-----------------------------------------hi~hvS~~~~~~~i~~ 214 (386)
T PRK08417 176 PSIAETKEVAKMKELAKFYKNKV-----------------------------------------LFDTLALPRSLELLDK 214 (386)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCE-----------------------------------------EEEeCCCHHHHHHHHH
Confidence 34677788888888888888776 5578888777765543
Q ss_pred ---cccceeeecCchhhcCCCChhHH
Q 006203 475 ---LGTALLCYVTPKEHLGLPNRDDV 497 (657)
Q Consensus 475 ---~GadfLCYVTPaEHLgLP~~eDV 497 (657)
-|..+-|=|||- ||-|- .+|+
T Consensus 215 ak~~g~~vt~ev~ph-~L~l~-~~~~ 238 (386)
T PRK08417 215 FKSEGEKLLKEVSIH-HLILD-DSAC 238 (386)
T ss_pred HHHCCCCEEEEechH-HHeeC-HHHh
Confidence 588899999984 78775 4455
No 170
>PRK05826 pyruvate kinase; Provisional
Probab=40.17 E-value=92 Score=35.34 Aligned_cols=94 Identities=21% Similarity=0.218 Sum_probs=58.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCC---------cCc-hhhhHH
Q 006203 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHK---------ENF-AYEHWD 364 (657)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~---------ENp-lY~~FD 364 (657)
..||+.+..+ |..-++.|+||+.+=.==+.+.+... ..++...+. |++ -++++|
T Consensus 169 p~lte~D~~~-i~~ald~g~d~I~~sfV~saedv~~l---------------~~~l~~~~~~~~~iiakIEt~eav~nld 232 (465)
T PRK05826 169 PALTEKDKAD-IKFAAEQGVDYIAVSFVRSAEDVEEA---------------RRLLREAGCPHAKIIAKIERAEAVDNID 232 (465)
T ss_pred CCCChhhHHH-HHHHHHCCCCEEEECCCCCHHHHHHH---------------HHHHHHcCCcCceEEEEEcCHHHHHhHH
Confidence 4567777655 56778999999976543344444422 144444443 222 367788
Q ss_pred HHHHHH-----hHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe
Q 006203 365 EILDIC-----NQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN 419 (657)
Q Consensus 365 ~ileI~-----k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMI 419 (657)
+|++.. ..+|..++|| ...+.+ .+-++.+.|+++|+.|++
T Consensus 233 eI~~~~DgImIgrgDLg~elg-------------~~~v~~--~qk~Ii~~c~~~gKpvi~ 277 (465)
T PRK05826 233 EIIEASDGIMVARGDLGVEIP-------------DEEVPG--LQKKIIRKAREAGKPVIT 277 (465)
T ss_pred HHHHHcCEEEECcchhhhhcC-------------cHhHHH--HHHHHHHHHHHcCCCEEE
Confidence 888762 3455566776 123443 336888999999999987
No 171
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=40.07 E-value=1.1e+02 Score=32.81 Aligned_cols=81 Identities=11% Similarity=0.119 Sum_probs=51.3
Q ss_pred CChHHHHHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcC
Q 006203 234 SSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQG 313 (657)
Q Consensus 234 ~~ie~EveKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqG 313 (657)
.++++=++.++...++|||.|+==+ -.+++++++ +.++.+.|+ ++ ..+ .++..-.+|.++| .+-|
T Consensus 162 ~g~deaI~Ra~aY~eAGAD~ifi~~-~~~~~ei~~-~~~~~~~P~--~~--nv~--~~~~~p~~s~~eL-------~~lG 226 (294)
T TIGR02319 162 FGLDEAIRRSREYVAAGADCIFLEA-MLDVEEMKR-VRDEIDAPL--LA--NMV--EGGKTPWLTTKEL-------ESIG 226 (294)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEecC-CCCHHHHHH-HHHhcCCCe--eE--EEE--ecCCCCCCCHHHH-------HHcC
Confidence 3689999999999999999999543 245565554 333444443 00 111 1233344554444 6789
Q ss_pred CCEEEEeccccccccc
Q 006203 314 VDYFTIHAGVLLRYIP 329 (657)
Q Consensus 314 VDf~TIHaGv~~~~v~ 329 (657)
|.++++++...+....
T Consensus 227 ~~~v~~~~~~~~aa~~ 242 (294)
T TIGR02319 227 YNLAIYPLSGWMAAAS 242 (294)
T ss_pred CcEEEEcHHHHHHHHH
Confidence 9999999876554443
No 172
>PRK06852 aldolase; Validated
Probab=40.06 E-value=39 Score=36.43 Aligned_cols=180 Identities=12% Similarity=0.052 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhcCCCEEEEeccccccccccccCcccCcccc--ccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEe
Q 006203 301 VFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSR--GGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALS 378 (657)
Q Consensus 301 ~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSR--GGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlS 378 (657)
++..+++.-.+.|+|-+..|-|+.+.+.+... -+++|=| +++-+.. ...-+|++ -++-|
T Consensus 60 dp~~~i~~~~~~g~dav~~~~G~l~~~~~~~~--~~~lIlkl~~~t~l~~----~~~~~p~~-------------~l~~s 120 (304)
T PRK06852 60 DPEHLFRIASKAKIGVFATQLGLIARYGMDYP--DVPYLVKLNSKTNLVK----TSQRDPLS-------------RQLLD 120 (304)
T ss_pred CHHHHHHHHHhcCCCEEEeCHHHHHhhccccC--CCcEEEEECCCCCcCC----cccCCccc-------------cceec
Confidence 33445555566799999999999877654321 2333322 2221110 00002322 12333
Q ss_pred ccCCCCCCCc----cCCC-------cHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCcc
Q 006203 379 IGDGLRPGSI----YDAN-------DTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFY 447 (657)
Q Consensus 379 LGDGLRPG~i----~DA~-------D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfY 447 (657)
.=|.+|-||- +||- +..+.+.|..|+++++.|.++|+-+|+. -|
T Consensus 121 VeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~-------------------------~y 175 (304)
T PRK06852 121 VEQVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLW-------------------------IY 175 (304)
T ss_pred HHHHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEE-------------------------ee
Confidence 4444554433 3331 3445677889999999999999999972 24
Q ss_pred ccCccccccCCCchhHHHhHHHHHhhhcccceeeecCchhhcCCCChhHHHHHHHHHHHHHhHhhhhcCCcchhhHHHHH
Q 006203 448 TLGPLTTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPLAQTWDDAL 527 (657)
Q Consensus 448 vLGPLvTDIApGYDHITsAIGaA~aa~~GadfLCYVTPaEHLgLP~~eDVkeGViA~kIAAHaaDlaKg~p~A~~rD~~m 527 (657)
..||-+.|-- ..|-|.-|. =+++-.|||++---=|.-|.. -+.|..++ |+++ +..+-=|..|.|..-+ +..+
T Consensus 176 prG~~i~~~~-~~~~ia~aa--RiaaELGADIVKv~y~~~~~~-g~~e~f~~-vv~~--~g~vpVviaGG~k~~~-~e~L 247 (304)
T PRK06852 176 PRGKAVKDEK-DPHLIAGAA--GVAACLGADFVKVNYPKKEGA-NPAELFKE-AVLA--AGRTKVVCAGGSSTDP-EEFL 247 (304)
T ss_pred ccCcccCCCc-cHHHHHHHH--HHHHHHcCCEEEecCCCcCCC-CCHHHHHH-HHHh--CCCCcEEEeCCCCCCH-HHHH
Confidence 4466554321 123444444 578899999997543432222 13456666 3331 1133334557665522 2345
Q ss_pred HHHHh
Q 006203 528 SKARF 532 (657)
Q Consensus 528 SkAR~ 532 (657)
...|.
T Consensus 248 ~~v~~ 252 (304)
T PRK06852 248 KQLYE 252 (304)
T ss_pred HHHHH
Confidence 44443
No 173
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=40.03 E-value=5 Score=39.14 Aligned_cols=92 Identities=23% Similarity=0.216 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccccccccccccCcccC--ccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhH-hcee
Q 006203 300 EVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTG--IVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQ-YDVA 376 (657)
Q Consensus 300 e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~Rvtg--IVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~-YDVt 376 (657)
..++..+.+...+|-..+-+-.. .+.|-.. ||||-|.-+... ...-..|.++.++... |||.
T Consensus 16 ~eLi~~~~~~~~~~~~v~~~kp~--------~D~R~~~~~I~s~~g~~~~~~-------~~~~~~~~~~~~~~~~~~dvI 80 (176)
T PF00265_consen 16 TELIRRIHRYEIAGKKVLVFKPA--------IDTRYGEDKIVSHDGISLEAI-------VDPIDNLFEIIDILENDYDVI 80 (176)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEES--------TSCCCCSSEEEHTTSCEEEEE-------SSEESSGGGGGGGCCTTCSEE
T ss_pred HHHHHHHHHHHhCCCeEEEEEec--------ccCcCCCCeEEecCCCccccc-------ccchhhHHHHHHHhccCCCEE
Confidence 56777777777888887755443 3456554 899988654443 2233345555555555 8887
Q ss_pred EeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeC
Q 006203 377 LSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEG 421 (657)
Q Consensus 377 lSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEG 421 (657)
+ -|++||=+ ..+-+|++.+.++|+-|++=|
T Consensus 81 ~--------------IDEaQFf~-~~i~~l~~~~~~~g~~Vi~~G 110 (176)
T PF00265_consen 81 G--------------IDEAQFFD-EQIVQLVEILANKGIPVICAG 110 (176)
T ss_dssp E--------------ESSGGGST-TTHHHHHHHHHHTT-EEEEEE
T ss_pred E--------------EechHhhH-HHHHHHHHHHHhCCCeEEEEe
Confidence 5 59999988 778889999999999999987
No 174
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=39.79 E-value=5.1e+02 Score=27.91 Aligned_cols=74 Identities=30% Similarity=0.249 Sum_probs=47.3
Q ss_pred CHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeec---------cccCCCCCChHHHHHHHHHHHHhC--CCEe
Q 006203 186 DPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNAN---------IGNSAVASSIEEEVYKVQWATMWG--ADTV 254 (657)
Q Consensus 186 ~pE~vR~~VA~Gr~VIPaN~nh~~~~p~~IG~~l~tKVNAN---------IGtS~~~~~ie~EveKl~~A~~~G--ADtv 254 (657)
+++.|++.+.+=+-++|.| .++ -+-+|.|.| .|-+.+.+|..| ++.|.+.| .+.|
T Consensus 9 d~~~l~~~~~~l~~a~~~~-----~~~-----~yAvKaN~~~~il~~l~~~G~g~DvaS~~E----l~~al~~G~~~~~I 74 (379)
T cd06836 9 DLDGFRALVARLTAAFPAP-----VLH-----TFAVKANPLVPVLRLLAEAGAGAEVASPGE----LELALAAGFPPERI 74 (379)
T ss_pred cHHHHHHHHHHHHHhcCCC-----cEE-----EEEEecCCCHHHHHHHHHcCCcEEEcCHHH----HHHHHHcCCChhhE
Confidence 5666777766655555542 112 478888887 677778877765 55556655 5667
Q ss_pred eecCCCCChHHHHHHHHhc
Q 006203 255 MDLSTGRHIHETREWILRN 273 (657)
Q Consensus 255 MDLSTGgdi~~~R~~Il~n 273 (657)
+==..++...+++..+=..
T Consensus 75 i~~gp~K~~~~L~~ai~~g 93 (379)
T cd06836 75 VFDSPAKTRAELREALELG 93 (379)
T ss_pred EEeCCCCCHHHHHHHHHCC
Confidence 7666777777776665433
No 175
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=39.69 E-value=2.1e+02 Score=32.04 Aligned_cols=205 Identities=17% Similarity=0.283 Sum_probs=128.4
Q ss_pred EeecCCceeEeeccccCCCCCChHHHHHHHHHHHHhCCCE----eeecCCCCChHHHHHHHHhcCCCccccchhhhHHHH
Q 006203 214 IVGRNFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADT----VMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEK 289 (657)
Q Consensus 214 ~IG~~l~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADt----vMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k 289 (657)
.||-+--+-|-.= |..++.|++.-++....-.++|+|- |-|.-....|.+|++.+ ++|+
T Consensus 21 ~iGg~~Pi~VQSM--t~t~T~Dv~atv~Qi~~L~~aGceiVRvav~~~~~a~al~~I~~~~----~iPl----------- 83 (360)
T PRK00366 21 PIGGDAPIVVQSM--TNTDTADVEATVAQIKRLARAGCEIVRVAVPDMEAAAALPEIKKQL----PVPL----------- 83 (360)
T ss_pred eECCCCcEEEEec--CCCCchhHHHHHHHHHHHHHcCCCEEEEccCCHHHHHhHHHHHHcC----CCCE-----------
Confidence 3444444444322 5667899999999999999999995 45555555565555544 5554
Q ss_pred hcCccCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHH
Q 006203 290 VDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDI 369 (657)
Q Consensus 290 ~~g~~~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI 369 (657)
+.|+--+ .....+.++.|||-+-|-.|= . |+ .-++|.++.+.
T Consensus 84 ----vADIHFd--~~lAl~a~~~G~~~iRINPGN-i-----------------g~--------------~~~~v~~vv~~ 125 (360)
T PRK00366 84 ----VADIHFD--YRLALAAAEAGADALRINPGN-I-----------------GK--------------RDERVREVVEA 125 (360)
T ss_pred ----EEecCCC--HHHHHHHHHhCCCEEEECCCC-C-----------------Cc--------------hHHHHHHHHHH
Confidence 1222111 133455688999999777762 1 11 24789999999
Q ss_pred HhHhceeEeccCCCCCCCccCC--------CcHHHHHHHHHHHHHHHHHHhcCCe---EEeeCCCCCCCCchHHHHHHHH
Q 006203 370 CNQYDVALSIGDGLRPGSIYDA--------NDTAQFAELLTQGELTRRAWDKDVQ---VMNEGPGHIPMHKIPENMQKQL 438 (657)
Q Consensus 370 ~k~YDVtlSLGDGLRPG~i~DA--------~D~AQ~~EL~~LGEL~krA~e~gVQ---VMIEGPGHVPl~~I~~Nv~lqk 438 (657)
||+|++.+=+| .=-||+..- +-+|-++- --+-++.+.+.|-. +-+. -+=+...|++|-.+.+
T Consensus 126 ak~~~ipIRIG--vN~GSL~~~~~~~yg~~t~eamveS---Al~~~~~le~~~f~~iviS~K--sS~v~~~i~ayrlla~ 198 (360)
T PRK00366 126 AKDYGIPIRIG--VNAGSLEKDLLEKYGEPTPEALVES---ALRHAKILEELGFDDIKISVK--ASDVQDLIAAYRLLAK 198 (360)
T ss_pred HHHCCCCEEEe--cCCccChHHHHHHcCCCCHHHHHHH---HHHHHHHHHHCCCCcEEEEEE--cCCHHHHHHHHHHHHh
Confidence 99999998775 345555311 11111111 11233444454443 3333 3445667888988876
Q ss_pred HhcCCCCccccCccccccCCCchhH---HHhHHHHHhhhcccceeeecCc
Q 006203 439 EWCNEAPFYTLGPLTTDIAPGYDHI---TSAIGAANIGALGTALLCYVTP 485 (657)
Q Consensus 439 ~lC~~APfYvLGPLvTDIApGYDHI---TsAIGaA~aa~~GadfLCYVTP 485 (657)
+ |+ -||. ==||--+++.+=+ +.+||..+.---|-.+-.-+|.
T Consensus 199 ~-~d-yPLH---lGvTEAG~~~~G~iKSa~gig~LL~~GIGDTiRVSLt~ 243 (360)
T PRK00366 199 R-CD-YPLH---LGVTEAGMGFKGTVKSAAGLGALLQEGIGDTIRVSLTA 243 (360)
T ss_pred c-CC-CCce---ecccCCCCCCCceehhHHHHHHHHHhcCCCeEEEeCCC
Confidence 6 54 4443 3388888888854 5678888888889888888774
No 176
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.67 E-value=50 Score=34.90 Aligned_cols=68 Identities=22% Similarity=0.236 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEE
Q 006203 239 EVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFT 318 (657)
Q Consensus 239 EveKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGVDf~T 318 (657)
.+|-+..|.++|||.|| | ..-+..++++.+-.. .---..+. + .+-|.+ |. +.+.+-|+-|||++.
T Consensus 191 tleea~~A~~~GaDiI~-L-Dn~~~e~l~~~v~~~-~~~~~~~~----i-eAsGgI---t~----~ni~~ya~~GvD~Is 255 (273)
T PRK05848 191 SLEEAKNAMNAGADIVM-C-DNMSVEEIKEVVAYR-NANYPHVL----L-EASGNI---TL----ENINAYAKSGVDAIS 255 (273)
T ss_pred CHHHHHHHHHcCCCEEE-E-CCCCHHHHHHHHHHh-hccCCCeE----E-EEECCC---CH----HHHHHHHHcCCCEEE
Confidence 35667789999999999 4 556888888876421 10001221 1 222333 44 566777999999998
Q ss_pred Eec
Q 006203 319 IHA 321 (657)
Q Consensus 319 IHa 321 (657)
+=+
T Consensus 256 vG~ 258 (273)
T PRK05848 256 SGS 258 (273)
T ss_pred eCh
Confidence 755
No 177
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=39.58 E-value=3.4e+02 Score=29.34 Aligned_cols=159 Identities=19% Similarity=0.271 Sum_probs=88.0
Q ss_pred ChHHHHHHHHHHH-HhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHH----
Q 006203 235 SIEEEVYKVQWAT-MWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQ---- 309 (657)
Q Consensus 235 ~ie~EveKl~~A~-~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQ---- 309 (657)
+.-..++|+.-++ ++|+-.++-|+-+|-....-...+.-|++ |... ....+..||.|++.++|+.-
T Consensus 78 ~~i~~~r~l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~-----~~~~----~~~~p~~mt~eeI~~ii~~f~~aA 148 (337)
T PRK13523 78 EHIEGLHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAI-----PFDE----KSKTPVEMTKEQIKETVLAFKQAA 148 (337)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCC-----CCCC----CCCCCCcCCHHHHHHHHHHHHHHH
Confidence 4556677765554 57889999998877532100001111222 2211 12345789999888877643
Q ss_pred ---HhcCCCEEEEecc---ccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhc--eeEeccC
Q 006203 310 ---AEQGVDYFTIHAG---VLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYD--VALSIGD 381 (657)
Q Consensus 310 ---AeqGVDf~TIHaG---v~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YD--VtlSLGD 381 (657)
.+.|.|.+-||+| +.-+.+....++.+. .-|||+. .-| -|+.+-.|.|-+-+ .+. |-||.-|
T Consensus 149 ~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD--~yGGsle-nR~------Rf~~eii~~ir~~~-~~~v~vRis~~d 218 (337)
T PRK13523 149 VRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTD--EYGGSPE-NRY------RFLREIIDAVKEVW-DGPLFVRISASD 218 (337)
T ss_pred HHHHHcCCCEEEEccccchHHHHhcCCccCCcCC--CCCCCHH-HHH------HHHHHHHHHHHHhc-CCCeEEEecccc
Confidence 4579999999998 455555543444333 2689953 322 35566666666554 233 3455545
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCC
Q 006203 382 GLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPG 423 (657)
Q Consensus 382 GLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPG 423 (657)
.+ +| ..+ ++|. .+++++.-+.||...-=..|
T Consensus 219 ~~-~~----G~~---~~e~---~~i~~~l~~~gvD~i~vs~g 249 (337)
T PRK13523 219 YH-PG----GLT---VQDY---VQYAKWMKEQGVDLIDVSSG 249 (337)
T ss_pred cC-CC----CCC---HHHH---HHHHHHHHHcCCCEEEeCCC
Confidence 43 22 222 2333 34556666778875543444
No 178
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=39.24 E-value=2.9e+02 Score=31.06 Aligned_cols=134 Identities=16% Similarity=0.264 Sum_probs=70.8
Q ss_pred CccCCCCHHHHHHHHHHHHh-cCCCEEEEecc---ccccccccccCccc-CccccccHHHHHHHHHcCCcCchhhhHHHH
Q 006203 292 GIAENLSWEVFRDTLIEQAE-QGVDYFTIHAG---VLLRYIPLTAKRMT-GIVSRGGSIHAKWCLAYHKENFAYEHWDEI 366 (657)
Q Consensus 292 g~~~~lt~e~~~d~ieeQAe-qGVDf~TIHaG---v~~~~v~~~~~Rvt-gIVSRGGSi~a~Wml~h~~ENplY~~FD~i 366 (657)
+..-.-+.|.+.+.|++..+ .||.+|.+.-. ++++.+. ++. .|+.|| .+-..|.....-.+-+- -+++
T Consensus 217 ~~~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~----~l~~~l~~~~-~l~i~w~~~~r~~~i~~--d~el 289 (497)
T TIGR02026 217 RRYRHRDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQ----EFCEEIIARN-PISVTWGINTRVTDIVR--DADI 289 (497)
T ss_pred ceeecCCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHH----HHHHHHHhcC-CCCeEEEEecccccccC--CHHH
Confidence 34455678889999988764 69998876532 2222211 111 122232 11123432222222111 2578
Q ss_pred HHHHhHhce-eEeccCCCCCCCccCCCcHHHHHHH------HHHHHHHHHHHhcCCe----EEeeCCCCCCCCchHHHHH
Q 006203 367 LDICNQYDV-ALSIGDGLRPGSIYDANDTAQFAEL------LTQGELTRRAWDKDVQ----VMNEGPGHIPMHKIPENMQ 435 (657)
Q Consensus 367 leI~k~YDV-tlSLGDGLRPG~i~DA~D~AQ~~EL------~~LGEL~krA~e~gVQ----VMIEGPGHVPl~~I~~Nv~ 435 (657)
|+.+++..+ .++|| + ++.|...+..+ ...-+.++.++++|+. .|+=-||. -...++++++
T Consensus 290 l~~l~~aG~~~v~iG--i------ES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~e-t~e~~~~t~~ 360 (497)
T TIGR02026 290 LHLYRRAGLVHISLG--T------EAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENE-TDETFEETYR 360 (497)
T ss_pred HHHHHHhCCcEEEEc--c------ccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCC-CHHHHHHHHH
Confidence 899988886 57775 2 22222222211 1234567778888874 45544775 5567777777
Q ss_pred HHHHhc
Q 006203 436 KQLEWC 441 (657)
Q Consensus 436 lqk~lC 441 (657)
.-+++.
T Consensus 361 ~~~~l~ 366 (497)
T TIGR02026 361 QLLDWD 366 (497)
T ss_pred HHHHcC
Confidence 766643
No 179
>PRK08185 hypothetical protein; Provisional
Probab=39.13 E-value=36 Score=36.11 Aligned_cols=32 Identities=25% Similarity=0.234 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhCCCEee----ecCCCCChHHHHHHH
Q 006203 239 EVYKVQWATMWGADTVM----DLSTGRHIHETREWI 270 (657)
Q Consensus 239 EveKl~~A~~~GADtvM----DLSTGgdi~~~R~~I 270 (657)
.++.++.|++.|.++|| +|+.-.||..+|+-+
T Consensus 80 ~~e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv 115 (283)
T PRK08185 80 TIEDVMRAIRCGFTSVMIDGSLLPYEENVALTKEVV 115 (283)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 35667889999999999 566666777777655
No 180
>PRK12361 hypothetical protein; Provisional
Probab=39.10 E-value=89 Score=35.22 Aligned_cols=121 Identities=14% Similarity=0.191 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEE
Q 006203 239 EVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFT 318 (657)
Q Consensus 239 EveKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGVDf~T 318 (657)
++++|+ ++|-.+|.||..--+. . ++-.....+-.=.+|+.+-. ....-..+...+.|+++.++|=. +-
T Consensus 112 d~~~L~---~~gI~~Vldlt~E~~~--~-~~~~~~~~i~yl~iPi~D~~-----~p~~~~l~~a~~~i~~~~~~~~~-Vl 179 (547)
T PRK12361 112 DLEKLK---SNKITAILDVTAEFDG--L-DWSLTEEDIDYLNIPILDHS-----VPTLAQLNQAINWIHRQVRANKS-VV 179 (547)
T ss_pred cHHHHH---HcCCCEEEEccccccc--c-cccccccCceEEEeecCCCC-----CCcHHHHHHHHHHHHHHHHCCCe-EE
Confidence 445553 6999999999743221 0 00000111112223443310 00000124556777788887755 55
Q ss_pred EeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHH
Q 006203 319 IHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFA 398 (657)
Q Consensus 319 IHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~ 398 (657)
|||- .| +||.++++++|+++.++.- .+++-++..|+ .||...--. +|+.
T Consensus 180 VHC~---------~G-----~sRSa~vv~ayLm~~~~~~----~~~eA~~~vr~----------~Rp~v~~n~---~q~~ 228 (547)
T PRK12361 180 VHCA---------LG-----RGRSVLVLAAYLLCKDPDL----TVEEVLQQIKQ----------IRKTARLNK---RQLR 228 (547)
T ss_pred EECC---------CC-----CCcHHHHHHHHHHHhccCC----CHHHHHHHHHH----------HCCCCCCCH---HHHH
Confidence 9993 33 5999999999999775432 23566666655 366655432 4555
Q ss_pred HHHH
Q 006203 399 ELLT 402 (657)
Q Consensus 399 EL~~ 402 (657)
.|..
T Consensus 229 ~l~~ 232 (547)
T PRK12361 229 ALEK 232 (547)
T ss_pred HHHH
Confidence 5443
No 181
>PRK05927 hypothetical protein; Provisional
Probab=38.62 E-value=31 Score=37.22 Aligned_cols=49 Identities=20% Similarity=0.174 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeeccccCCCCCChHHHHHHHHHHHHhCCCEeee
Q 006203 184 KLDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMD 256 (657)
Q Consensus 184 ~i~pE~vR~~VA~Gr~VIPaN~nh~~~~p~~IG~~l~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADtvMD 256 (657)
..+++...+-||--|+++| |++|+..-.+..| .+..+.|+.+|||-+|=
T Consensus 255 ~~s~~e~Lr~iAv~Rl~lp-~~~~i~~~w~~~G-----------------------~~~~q~~L~~GanDlgg 303 (350)
T PRK05927 255 QASPELYYRILAVARIFLD-NFDHIAASWFGEG-----------------------KEEGAKGLHYGADDFGG 303 (350)
T ss_pred CCCHHHHHHHHHHHHHhCC-CCCcccCCccccC-----------------------HHHHHHHHhCCCccccC
Confidence 5899999999999999999 8888433222211 24678899999998874
No 182
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=38.30 E-value=53 Score=33.87 Aligned_cols=77 Identities=23% Similarity=0.267 Sum_probs=52.1
Q ss_pred CCChHHHHHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhc
Q 006203 233 ASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQ 312 (657)
Q Consensus 233 ~~~ie~EveKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeq 312 (657)
..++++=++.++...++|||.|+=-+. .+.+++ +.+.+..++|+-.+|- ++ .+|.++| .+-
T Consensus 151 ~~~~deaI~R~~aY~eAGAD~ifi~~~-~~~~~i-~~~~~~~~~Pl~v~~~-------~~---~~~~~eL-------~~l 211 (238)
T PF13714_consen 151 EEGLDEAIERAKAYAEAGADMIFIPGL-QSEEEI-ERIVKAVDGPLNVNPG-------PG---TLSAEEL-------AEL 211 (238)
T ss_dssp HHHHHHHHHHHHHHHHTT-SEEEETTS-SSHHHH-HHHHHHHSSEEEEETT-------SS---SS-HHHH-------HHT
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCC-CCHHHH-HHHHHhcCCCEEEEcC-------CC---CCCHHHH-------HHC
Confidence 457899999999999999999995443 466665 3444455777666552 11 1555544 678
Q ss_pred CCCEEEEecccccccc
Q 006203 313 GVDYFTIHAGVLLRYI 328 (657)
Q Consensus 313 GVDf~TIHaGv~~~~v 328 (657)
||..++++....+..+
T Consensus 212 Gv~~v~~~~~~~~aa~ 227 (238)
T PF13714_consen 212 GVKRVSYGNSLLRAAM 227 (238)
T ss_dssp TESEEEETSHHHHHHH
T ss_pred CCcEEEEcHHHHHHHH
Confidence 9999999987655443
No 183
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=38.25 E-value=32 Score=34.79 Aligned_cols=60 Identities=25% Similarity=0.283 Sum_probs=46.4
Q ss_pred CchhhhHHHHHHHHhHhceeEecc-CCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCC
Q 006203 357 NFAYEHWDEILDICNQYDVALSIG-DGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIP 426 (657)
Q Consensus 357 NplY~~FD~ileI~k~YDVtlSLG-DGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVP 426 (657)
.++|+.+++|++.++++++.|=+= -|||-|.- |..-.-++.+++.+.||.|.+=-=-|.|
T Consensus 181 ~~~~~~~~~il~~~~~~g~~lEiNt~g~r~~~~----------~~yP~~~il~~~~~~g~~itlgSDAH~~ 241 (253)
T TIGR01856 181 DEVYELLQRILKLVASQGKALEFNTSGLRKPLE----------EAYPSKELLNLAKELGIPLVLGSDAHGP 241 (253)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEcHhhcCCCC----------CCCCCHHHHHHHHHcCCCEEecCCCCCH
Confidence 447888999999999999998442 27887544 3444457889999999998886667887
No 184
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=38.03 E-value=10 Score=40.36 Aligned_cols=90 Identities=26% Similarity=0.362 Sum_probs=55.2
Q ss_pred ChHHHHHHHHHHHHhCCCEeeecCC---CCChHHHHHHHHhcCCCccc-cchhhhHHHHhcCccCCCCHHHHHHHHHHHH
Q 006203 235 SIEEEVYKVQWATMWGADTVMDLST---GRHIHETREWILRNSAVPVG-TVPIYQALEKVDGIAENLSWEVFRDTLIEQA 310 (657)
Q Consensus 235 ~ie~EveKl~~A~~~GADtvMDLST---Ggdi~~~R~~Il~nspvPVG-TVPIYqA~~k~~g~~~~lt~e~~~d~ieeQA 310 (657)
+++.-++.|+..-.+|..||.|.++ |.|...+|+ |=+.|-|.|= +-=.|..- -.-..+..++.|+|-+.+.+..
T Consensus 36 ~~~~~~~El~~~k~~Gg~tiVd~T~~g~GRd~~~l~~-is~~tGv~II~~TG~y~~~-~~p~~~~~~s~e~la~~~i~Ei 113 (308)
T PF02126_consen 36 DVEAAVAELKEFKAAGGRTIVDATPIGLGRDVEALRE-ISRRTGVNIIASTGFYKEP-FYPEWVREASVEELADLFIREI 113 (308)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEE--SGGGTB-HHHHHH-HHHHHT-EEEEEEEE-SGG-CSCHHHHTSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCEEEecCCcccCcCHHHHHH-HHHHhCCeEEEeCCCCccc-cCChhhhcCCHHHHHHHHHHHH
Confidence 5555566777777899999999998 778877665 4556666542 11122210 0011246778899999999999
Q ss_pred hcCCCEEEEecccccc
Q 006203 311 EQGVDYFTIHAGVLLR 326 (657)
Q Consensus 311 eqGVDf~TIHaGv~~~ 326 (657)
+.|+|--.|.||+-..
T Consensus 114 ~~GidgT~ikaG~Ik~ 129 (308)
T PF02126_consen 114 EEGIDGTGIKAGIIKE 129 (308)
T ss_dssp HT-STTSSB-ESEEEE
T ss_pred HhcCCCCccchhheeE
Confidence 9999966666655433
No 185
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=37.95 E-value=28 Score=35.96 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecc
Q 006203 296 NLSWEVFRDTLIEQAEQGVDYFTIHAG 322 (657)
Q Consensus 296 ~lt~e~~~d~ieeQAeqGVDf~TIHaG 322 (657)
-++.+.|++.|..-|.-+...+-+|-.
T Consensus 14 ~~~~~~ik~~id~ma~~k~N~lhlhl~ 40 (351)
T PF00728_consen 14 FFSVDTIKRLIDQMAYYKLNVLHLHLS 40 (351)
T ss_dssp -B-HHHHHHHHHHHHHTT-SEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEEe
Confidence 457788888888889999998888874
No 186
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=37.93 E-value=98 Score=32.47 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=14.1
Q ss_pred ChHHHHHHHHHHHHhCCCEe
Q 006203 235 SIEEEVYKVQWATMWGADTV 254 (657)
Q Consensus 235 ~ie~EveKl~~A~~~GADtv 254 (657)
+.++=.+-++.+.++|+|.|
T Consensus 73 ~~~~~~~aa~~~~~~G~d~I 92 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADII 92 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEE
Confidence 44454555667888999987
No 187
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=37.88 E-value=25 Score=37.21 Aligned_cols=73 Identities=16% Similarity=0.276 Sum_probs=42.3
Q ss_pred HHHHHHHHHhCCCEee----ecCCCCChHHHHHHH--HhcCCCccccchhhhH-HHHhcCc---c---CC-CCHHHHHHH
Q 006203 240 VYKVQWATMWGADTVM----DLSTGRHIHETREWI--LRNSAVPVGTVPIYQA-LEKVDGI---A---EN-LSWEVFRDT 305 (657)
Q Consensus 240 veKl~~A~~~GADtvM----DLSTGgdi~~~R~~I--l~nspvPVGTVPIYqA-~~k~~g~---~---~~-lt~e~~~d~ 305 (657)
++.+..|++.|.++|| +|+.-.||..+|+-. -+...+++ ++ +.+.+|. + .. =+.|+-.+.
T Consensus 89 ~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~v------E~ElG~i~g~ed~~~g~s~~t~peea~~f 162 (293)
T PRK07315 89 YEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISV------EAEVGTIGGEEDGIIGKGELAPIEDAKAM 162 (293)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEE------EEecCcccCcCccccCccCCCCHHHHHHH
Confidence 5578899999999999 455555666677654 23334554 11 1122220 1 11 244554443
Q ss_pred HHHHHhcCCCEEEEecc
Q 006203 306 LIEQAEQGVDYFTIHAG 322 (657)
Q Consensus 306 ieeQAeqGVDf~TIHaG 322 (657)
+ +.||||+.+=.|
T Consensus 163 ~----~tgvD~LAv~iG 175 (293)
T PRK07315 163 V----ETGIDFLAAGIG 175 (293)
T ss_pred H----HcCCCEEeeccc
Confidence 3 689999987644
No 188
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=37.84 E-value=66 Score=34.53 Aligned_cols=63 Identities=19% Similarity=0.205 Sum_probs=40.5
Q ss_pred HHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEe
Q 006203 241 YKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIH 320 (657)
Q Consensus 241 eKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGVDf~TIH 320 (657)
|-+..|+++|||.|| | ..-+.+++++.+-..- +.+ +.++-|.+. .+.|++-|+-||||+.+=
T Consensus 208 eea~~a~~agaDiIm-L-Dnmspe~l~~av~~~~----~~~-----~leaSGGI~-------~~ni~~yA~tGVD~Is~g 269 (290)
T PRK06559 208 AAAEEAAAAGADIIM-L-DNMSLEQIEQAITLIA----GRS-----RIECSGNID-------MTTISRFRGLAIDYVSSG 269 (290)
T ss_pred HHHHHHHHcCCCEEE-E-CCCCHHHHHHHHHHhc----Cce-----EEEEECCCC-------HHHHHHHHhcCCCEEEeC
Confidence 456678899999998 3 3447777777764211 222 122223322 477888899999999765
Q ss_pred c
Q 006203 321 A 321 (657)
Q Consensus 321 a 321 (657)
+
T Consensus 270 a 270 (290)
T PRK06559 270 S 270 (290)
T ss_pred c
Confidence 4
No 189
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=37.76 E-value=4.7e+02 Score=27.02 Aligned_cols=104 Identities=15% Similarity=0.101 Sum_probs=64.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHh-
Q 006203 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQY- 373 (657)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~Y- 373 (657)
.+++++-+.+.++...+.|||-+.+ +|-+-+..-++ -++..+++|++.++
T Consensus 17 g~iD~~~l~~~i~~l~~~Gv~gi~~-~Gs~GE~~~ls----------------------------~~Er~~~~~~~~~~~ 67 (292)
T PRK03170 17 GSVDFAALRKLVDYLIANGTDGLVV-VGTTGESPTLT----------------------------HEEHEELIRAVVEAV 67 (292)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEE-CCcCCccccCC----------------------------HHHHHHHHHHHHHHh
Confidence 4699999999999999999999987 67666655543 23445566666654
Q ss_pred --ceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCe-EEeeCCCCCCCCchHHHHHHHHHhcC
Q 006203 374 --DVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQ-VMNEGPGHIPMHKIPENMQKQLEWCN 442 (657)
Q Consensus 374 --DVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQ-VMIEGPGHVPl~~I~~Nv~lqk~lC~ 442 (657)
++.+- .|..+.++ ...-++++.|.+.|+. ||+--|-..+..+ ++=++--+++|.
T Consensus 68 ~~~~~vi------~gv~~~~~--------~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~-~~i~~~~~~ia~ 124 (292)
T PRK03170 68 NGRVPVI------AGTGSNST--------AEAIELTKFAEKAGADGALVVTPYYNKPTQ-EGLYQHFKAIAE 124 (292)
T ss_pred CCCCcEE------eecCCchH--------HHHHHHHHHHHHcCCCEEEECCCcCCCCCH-HHHHHHHHHHHh
Confidence 22222 12222222 3344677888889998 6665565555544 444444455554
No 190
>PLN02537 diaminopimelate decarboxylase
Probab=37.55 E-value=5.7e+02 Score=27.74 Aligned_cols=96 Identities=16% Similarity=0.200 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHHHhc--CCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhH-
Q 006203 296 NLSWEVFRDTLIEQAEQ--GVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQ- 372 (657)
Q Consensus 296 ~lt~e~~~d~ieeQAeq--GVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~- 372 (657)
-++++++.+.+..-.+. |+++..||+=+--... ....+.+.++.+++++.+
T Consensus 162 Gi~~~~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~--------------------------~~~~~~~~~~~~~~~~~~~ 215 (410)
T PLN02537 162 GIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTIT--------------------------KVDIFRDAAVLMVNYVDEI 215 (410)
T ss_pred CCCHHHHHHHHHHHHhCCCCCcEEEEEeccCCCCC--------------------------chHHHHHHHHHHHHHHHHH
Confidence 34666666665543333 7888888875432211 112234444444444433
Q ss_pred --hce---eEeccCCCCCCCccCC----CcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCC
Q 006203 373 --YDV---ALSIGDGLRPGSIYDA----NDTAQFAELLTQGELTRRAWDKDVQVMNEGPGH 424 (657)
Q Consensus 373 --YDV---tlSLGDGLRPG~i~DA----~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGH 424 (657)
..+ .|++|-|| |..-.+. .|..++.+ .|.+...+.++|+++| ||.
T Consensus 216 ~~~g~~~~~idiGGGf-~v~y~~~~~~~~~~~~~~~-----~i~~~~~~~~~~li~E-PGR 269 (410)
T PLN02537 216 RAQGFELSYLNIGGGL-GIDYYHAGAVLPTPRDLID-----TVRELVLSRDLTLIIE-PGR 269 (410)
T ss_pred HHcCCCccEEEcCCCc-cccCCCCCCCCCCHHHHHH-----HHHHHHHhcCCEEEEc-cCh
Confidence 333 48999999 3332111 23333332 1222233568899888 664
No 191
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=37.42 E-value=4.1e+02 Score=26.04 Aligned_cols=85 Identities=16% Similarity=0.133 Sum_probs=49.2
Q ss_pred HHHHHHHhcCCeEEe-eCC---CCCCCC--chHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhhcccc
Q 006203 405 ELTRRAWDKDVQVMN-EGP---GHIPMH--KIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTA 478 (657)
Q Consensus 405 EL~krA~e~gVQVMI-EGP---GHVPl~--~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGYDHITsAIGaA~aa~~Gad 478 (657)
+.++++.++|+..++ .|+ ||.--. ...+.++.-++.+ +-|++.-|=+.+ .+++.-++- +|||
T Consensus 113 ~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~-~~Pvi~~GGI~~-----~~~v~~~l~------~Gad 180 (236)
T cd04730 113 EEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV-DIPVIAAGGIAD-----GRGIAAALA------LGAD 180 (236)
T ss_pred HHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh-CCCEEEECCCCC-----HHHHHHHHH------cCCc
Confidence 444566677777654 443 554321 2334455444444 479888886544 366766662 5888
Q ss_pred eeeecCc-hhhcCCCChhHHHHHH
Q 006203 479 LLCYVTP-KEHLGLPNRDDVKAGV 501 (657)
Q Consensus 479 fLCYVTP-aEHLgLP~~eDVkeGV 501 (657)
.++.-|. ..+...|...++|+=+
T Consensus 181 gV~vgS~l~~~~e~~~~~~~~~~~ 204 (236)
T cd04730 181 GVQMGTRFLATEESGASPAYKQAL 204 (236)
T ss_pred EEEEchhhhcCcccCCCHHHHHHH
Confidence 7777654 3444556666666544
No 192
>PLN02540 methylenetetrahydrofolate reductase
Probab=37.14 E-value=4e+02 Score=31.36 Aligned_cols=125 Identities=17% Similarity=0.258 Sum_probs=76.0
Q ss_pred CChHHHHHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcC
Q 006203 234 SSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQG 313 (657)
Q Consensus 234 ~~ie~EveKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqG 313 (657)
.+++.|+++|+.=+++|||-|+ |=++|++ |.|++-+++-.+.|
T Consensus 153 ~~~~~dl~~Lk~KvdAGAdFiI------------------------TQlfFD~-------------d~f~~f~~~~r~~G 195 (565)
T PLN02540 153 EAYQKDLAYLKEKVDAGADLII------------------------TQLFYDT-------------DIFLKFVNDCRQIG 195 (565)
T ss_pred CChHHHHHHHHHHHHcCCCEEe------------------------eccccCH-------------HHHHHHHHHHHhcC
Confidence 3788999999999999999877 4455554 66677776666779
Q ss_pred CCEEEEeccccccccccccCcccCccccccHH-HHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCC
Q 006203 314 VDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSI-HAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDAN 392 (657)
Q Consensus 314 VDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi-~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~ 392 (657)
++ +-|+.|| |+|.|...-. |++|| +-+=| ++|++.+.++ .| .
T Consensus 196 i~-vPIipGI------------mPI~S~k~l~r~~~l~---Gi~IP-----~~i~~rLe~~---------------kd-d 238 (565)
T PLN02540 196 IT-CPIVPGI------------MPINNYKGFLRMTGFC---KTKIP-----AEITAALEPI---------------KD-N 238 (565)
T ss_pred CC-CCEEeee------------cccCCHHHHHHHHhcc---CCcCC-----HHHHHHHHhc---------------CC-C
Confidence 86 4788885 4555544322 34443 22222 4455555442 11 1
Q ss_pred cHH-HHHHHHHHHHHHHHHHhcCCeEEeeCCCC-CCCCchHHHHHHH
Q 006203 393 DTA-QFAELLTQGELTRRAWDKDVQVMNEGPGH-IPMHKIPENMQKQ 437 (657)
Q Consensus 393 D~A-Q~~EL~~LGEL~krA~e~gVQVMIEGPGH-VPl~~I~~Nv~lq 437 (657)
|++ +-.-+....|++++..+.||+ |= | +.||+-+.-.++-
T Consensus 239 de~v~~~Gieia~e~~~~L~~~Gv~----Gi-HfYTlN~e~~v~~IL 280 (565)
T PLN02540 239 DEAVKAYGIHLGTEMCKKILAHGIK----GL-HLYTLNLEKSALAIL 280 (565)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC----EE-EECccCChHHHHHHH
Confidence 332 334566778888888888744 22 4 3566655444333
No 193
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=37.04 E-value=57 Score=32.95 Aligned_cols=56 Identities=23% Similarity=0.137 Sum_probs=44.4
Q ss_pred hhHHHHHHHHhHh---------ceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCch
Q 006203 361 EHWDEILDICNQY---------DVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKI 430 (657)
Q Consensus 361 ~~FD~ileI~k~Y---------DVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I 430 (657)
--.|+|++.++++ .||||=|+-+ .|. .-+-+|.+++++.|+.+-||=-|++|...+
T Consensus 19 ~t~eel~~~~~~~~~f~~~sggGVt~SGGEPl-----------lq~---~fl~~l~~~~k~~gi~~~leTnG~~~~~~~ 83 (213)
T PRK10076 19 ITLDALEREVMKDDIFFRTSGGGVTLSGGEVL-----------MQA---EFATRFLQRLRLWGVSCAIETAGDAPASKL 83 (213)
T ss_pred cCHHHHHHHHHhhhHhhcCCCCEEEEeCchHH-----------cCH---HHHHHHHHHHHHcCCCEEEECCCCCCHHHH
Confidence 3579999999987 8999999864 343 234567788889999999999999996444
No 194
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=36.93 E-value=1.5e+02 Score=30.65 Aligned_cols=78 Identities=18% Similarity=0.167 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhcee
Q 006203 297 LSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVA 376 (657)
Q Consensus 297 lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVt 376 (657)
+|.++..+.+.+-.+.|+||+.+|.|-....... .+. ... +-...++.+-.|.+..++.
T Consensus 225 ~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~--------~~~------------~~~-~~~~~~~~~~~ir~~~~iP 283 (327)
T cd02803 225 LTLEEAIEIAKALEEAGVDALHVSGGSYESPPPI--------IPP------------PYV-PEGYFLELAEKIKKAVKIP 283 (327)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccc--------cCC------------CCC-CcchhHHHHHHHHHHCCCC
Confidence 6788999999998999999999999852211110 000 011 1123445666677777888
Q ss_pred EeccCCCCCCCccCCCcHHHHHHHHHH
Q 006203 377 LSIGDGLRPGSIYDANDTAQFAELLTQ 403 (657)
Q Consensus 377 lSLGDGLRPG~i~DA~D~AQ~~EL~~L 403 (657)
+-.+-|++ +..++.+++..
T Consensus 284 Vi~~Ggi~--------t~~~a~~~l~~ 302 (327)
T cd02803 284 VIAVGGIR--------DPEVAEEILAE 302 (327)
T ss_pred EEEeCCCC--------CHHHHHHHHHC
Confidence 88776665 34555555543
No 195
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=36.79 E-value=28 Score=33.97 Aligned_cols=112 Identities=9% Similarity=0.074 Sum_probs=58.2
Q ss_pred HHHHHHHHHhCCCEee-ecCCCCChHHHHHHHHhcC--CC--ccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCC
Q 006203 240 VYKVQWATMWGADTVM-DLSTGRHIHETREWILRNS--AV--PVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGV 314 (657)
Q Consensus 240 veKl~~A~~~GADtvM-DLSTGgdi~~~R~~Il~ns--pv--PVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGV 314 (657)
++.++.++++|||.|| .-+.-.|.+.+++..-+-. .+ ++. ++..+.+.+ ++ .+.+.....+.+++-.+.|+
T Consensus 85 ~e~~~~~~~~Gad~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid-~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~ga 160 (234)
T cd04732 85 LEDIERLLDLGVSRVIIGTAAVKNPELVKELLKEYGGERIVVGLD-AKDGKVATK-GW--LETSEVSLEELAKRFEELGV 160 (234)
T ss_pred HHHHHHHHHcCCCEEEECchHHhChHHHHHHHHHcCCceEEEEEE-eeCCEEEEC-CC--eeecCCCHHHHHHHHHHcCC
Confidence 5667777789999987 3333445444444332211 11 111 111111111 11 12233445566667778899
Q ss_pred CEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCC
Q 006203 315 DYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRP 385 (657)
Q Consensus 315 Df~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSLGDGLRP 385 (657)
|.+++|. +++ -|. ...+ +|+-|-++++..++.+-.+=|+|.
T Consensus 161 ~~iii~~-~~~----------------~g~----------~~g~---~~~~i~~i~~~~~ipvi~~GGi~~ 201 (234)
T cd04732 161 KAIIYTD-ISR----------------DGT----------LSGP---NFELYKELAAATGIPVIASGGVSS 201 (234)
T ss_pred CEEEEEe-ecC----------------CCc----------cCCC---CHHHHHHHHHhcCCCEEEecCCCC
Confidence 9999984 322 111 0111 255566666666777777777763
No 196
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=36.74 E-value=1.4e+02 Score=29.36 Aligned_cols=62 Identities=18% Similarity=0.169 Sum_probs=38.8
Q ss_pred HHHHHHHHhCCCEee-ecC-----CCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCC
Q 006203 241 YKVQWATMWGADTVM-DLS-----TGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGV 314 (657)
Q Consensus 241 eKl~~A~~~GADtvM-DLS-----TGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGV 314 (657)
+.++.|.++|||.|. |+. ++..+.++.+.+-++..+|+.. + -.|.+++ ++-.+.|+
T Consensus 79 ~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~-~-------------v~t~ee~----~~a~~~G~ 140 (221)
T PRK01130 79 KEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMA-D-------------CSTLEEG----LAAQKLGF 140 (221)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEE-e-------------CCCHHHH----HHHHHcCC
Confidence 346788999999664 554 2367777777775533444431 1 1244543 45677899
Q ss_pred CEEEEe
Q 006203 315 DYFTIH 320 (657)
Q Consensus 315 Df~TIH 320 (657)
||+.++
T Consensus 141 d~i~~~ 146 (221)
T PRK01130 141 DFIGTT 146 (221)
T ss_pred CEEEcC
Confidence 999763
No 197
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=36.62 E-value=1.6e+02 Score=31.84 Aligned_cols=111 Identities=20% Similarity=0.154 Sum_probs=80.8
Q ss_pred HcCCCHHHHHHHHhc---ceEEEecCCCCCCCCceEeecCCceeEeeccccCCCCCChHHHHHHHHHHH-HhCCCEeeec
Q 006203 182 REKLDPEFVRAEVAR---GRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT-MWGADTVMDL 257 (657)
Q Consensus 182 ~E~i~pE~vR~~VA~---Gr~VIPaN~nh~~~~p~~IG~~l~tKVNANIGtS~~~~~ie~EveKl~~A~-~~GADtvMDL 257 (657)
-.|+++|.|.+-+++ +..|=|+|.|-| ..-++= ...+.|+|+...+ +.|+...+.|
T Consensus 136 v~gl~~e~v~~~~~~~~~~~~v~iaN~N~~-~QiVIs-------------------G~~~ale~a~~~~~~~g~kr~i~l 195 (310)
T COG0331 136 VLGLDDEQVEKACEEAAQGTVVEIANYNSP-GQIVIS-------------------GTKEALEKAAEILKEAGAKRAIPL 195 (310)
T ss_pred HcCCCHHHHHHHHHHhccCCeEEEeeeCCC-CcEEEE-------------------CCHHHHHHHHHHHHHhhhhhhccc
Confidence 356888888776654 447889999886 444443 4567788876544 5677877779
Q ss_pred CCCCChHH---------HHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEE
Q 006203 258 STGRHIHE---------TREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYF 317 (657)
Q Consensus 258 STGgdi~~---------~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGVDf~ 317 (657)
.-++..|. ++ ..|.+.......+|+++-.... ..++.+.+++.+.+|.-.-|+|+
T Consensus 196 ~vs~pfHs~lm~pa~~~~~-~~l~~~~~~~~~ipvi~n~~~~----~~~~~~~i~~~L~~q~~~pVrW~ 259 (310)
T COG0331 196 PVSGPFHSPLMKPAADELA-EALEKVRFSDPLVPVISNVDAK----PVLDGEEIRELLAKQLTSPVRWT 259 (310)
T ss_pred CCCchhhhhhhHHHHHHHH-HHHHhcCCCCccceeeeccccc----cccCHHHHHHHHHHHhcCCeeHH
Confidence 99998875 33 4567788888899998865432 22788999999999998888873
No 198
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=36.15 E-value=36 Score=28.13 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=20.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhc
Q 006203 174 EEMLYCATREKLDPEFVRAEVAR 196 (657)
Q Consensus 174 ~EMe~VA~~E~i~pE~vR~~VA~ 196 (657)
-|++|.|++-|+|+|.|++.|++
T Consensus 21 ~ev~ywa~~~gvt~~~L~~AV~~ 43 (57)
T PF12244_consen 21 YEVRYWAKRFGVTEEQLREAVRA 43 (57)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHH
Confidence 48999999999999999999874
No 199
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=35.96 E-value=3.2e+02 Score=28.67 Aligned_cols=113 Identities=20% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcC--ccCCCCHHHHHHHHHHHHhcCCCEEEEe
Q 006203 243 VQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDG--IAENLSWEVFRDTLIEQAEQGVDYFTIH 320 (657)
Q Consensus 243 l~~A~~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g--~~~~lt~e~~~d~ieeQAeqGVDf~TIH 320 (657)
.+.|.++|||.+.=|-.. ++..+...| ....++++ -++=+.-.++-+...+--+-|||++-+|
T Consensus 73 ~~ma~~aGAd~~tV~g~A-~~~TI~~~i--------------~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H 137 (217)
T COG0269 73 ARMAFEAGADWVTVLGAA-DDATIKKAI--------------KVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILH 137 (217)
T ss_pred HHHHHHcCCCEEEEEecC-CHHHHHHHH--------------HHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEE
Q ss_pred ccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhc--eeEeccCCCCC-------------
Q 006203 321 AGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYD--VALSIGDGLRP------------- 385 (657)
Q Consensus 321 aGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YD--VtlSLGDGLRP------------- 385 (657)
-|+-.+..-..-+ +|+|-+|-+--+ +.+|..=|++|
T Consensus 138 ~g~D~q~~G~~~~-----------------------------~~~l~~ik~~~~~g~~vAVaGGI~~~~i~~~~~~~~~i 188 (217)
T COG0269 138 RGRDAQAAGKSWG-----------------------------EDDLEKIKKLSDLGAKVAVAGGITPEDIPLFKGIGADI 188 (217)
T ss_pred ecccHhhcCCCcc-----------------------------HHHHHHHHHhhccCceEEEecCCCHHHHHHHhcCCCCE
Q ss_pred ----CCccCCCcHHHHHH
Q 006203 386 ----GSIYDANDTAQFAE 399 (657)
Q Consensus 386 ----G~i~DA~D~AQ~~E 399 (657)
++|.+|.|.++.++
T Consensus 189 vIvGraIt~a~dp~~~a~ 206 (217)
T COG0269 189 VIVGRAITGAKDPAEAAR 206 (217)
T ss_pred EEECchhcCCCCHHHHHH
No 200
>PRK06801 hypothetical protein; Provisional
Probab=35.89 E-value=28 Score=36.89 Aligned_cols=80 Identities=26% Similarity=0.225 Sum_probs=40.8
Q ss_pred HHHHHHHHHhCCCEee-ecCCC---CChHHHHHHH--HhcCCCcc----ccchhhhHHHHhc--CccCCCCHHHHHHHHH
Q 006203 240 VYKVQWATMWGADTVM-DLSTG---RHIHETREWI--LRNSAVPV----GTVPIYQALEKVD--GIAENLSWEVFRDTLI 307 (657)
Q Consensus 240 veKl~~A~~~GADtvM-DLSTG---gdi~~~R~~I--l~nspvPV----GTVPIYqA~~k~~--g~~~~lt~e~~~d~ie 307 (657)
++-+..|++.|.++|| |-|.- .|+..+|+-. .+...|+| |.|.-=+--...+ +....-+.|+..+.++
T Consensus 87 ~e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~ 166 (286)
T PRK06801 87 FEAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVD 166 (286)
T ss_pred HHHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHH
Confidence 4557789999999999 44443 3555555543 23333333 4432000000000 1111223355554443
Q ss_pred HHHhcCCCEEEEecc
Q 006203 308 EQAEQGVDYFTIHAG 322 (657)
Q Consensus 308 eQAeqGVDf~TIHaG 322 (657)
+-||||+.|..|
T Consensus 167 ---~tgvD~LAvaiG 178 (286)
T PRK06801 167 ---RTGIDALAVAIG 178 (286)
T ss_pred ---HHCcCEEEeccC
Confidence 369999999555
No 201
>cd08616 PI-PLCXD1c Catalytic domain of phosphatidylinositol-specific phospholipase C, X domain containing 1. This subfamily corresponds to the catalytic domain present in a group of phosphatidylinositol-specific phospholipase C X domain containing 1 (PI-PLCXD1), 2 (PI-PLCXD2) and 3 (PI-PLCXD3), which are bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) sequence homologs found in vertebrates. The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, members in this group contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to
Probab=35.71 E-value=1.6e+02 Score=31.03 Aligned_cols=93 Identities=25% Similarity=0.308 Sum_probs=59.4
Q ss_pred HHHHHHhcCCCEEEEeccccc--cccccccCcccCccccccHH------HHHHHHHcCCc-------Cch---hhhHHHH
Q 006203 305 TLIEQAEQGVDYFTIHAGVLL--RYIPLTAKRMTGIVSRGGSI------HAKWCLAYHKE-------NFA---YEHWDEI 366 (657)
Q Consensus 305 ~ieeQAeqGVDf~TIHaGv~~--~~v~~~~~RvtgIVSRGGSi------~a~Wml~h~~E-------Npl---Y~~FD~i 366 (657)
.|.+|.+.||-||-+-.+... ..+-... |+. |+.+ +..|+.+|.+| ++. -++++++
T Consensus 63 ~i~~QL~~GiRyfDlRv~~~~~~~~~~~~H----g~~--~~~~~~~L~~i~~fl~~~p~Evvil~~~~~~~~~~~~~~~l 136 (290)
T cd08616 63 TITEQLEAGIRYFDLRIATKPKDNDLYFVH----GLY--GILVKEILEEINDFLTEHPKEVVILDFNHFYGMTEEDHEKL 136 (290)
T ss_pred cHHHHHhcCceEEEEEecccCCCCcEEEEE----ecc--chhHHHHHHHHHHHHHHCCCcEEEEEEEccCCCCHHHHHHH
Confidence 578999999999999887654 2222222 222 2233 35699888766 222 2567788
Q ss_pred HHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEee
Q 006203 367 LDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNE 420 (657)
Q Consensus 367 leI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIE 420 (657)
.+.+++. +||-|.|.+. |.. -.+|++|. +.|=||+|=
T Consensus 137 ~~~l~~~-----fg~~l~~~~~-~~~-------~~tL~~l~----~~~krVIi~ 173 (290)
T cd08616 137 LKMIKSI-----FGKKLCPRDP-DLL-------NVTLEYLW----EKGYQVIVF 173 (290)
T ss_pred HHHHHHH-----hcccccCCCC-CcC-------cCcHHHHH----hCCCEEEEE
Confidence 8888773 7999888654 211 24666664 477788874
No 202
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=35.62 E-value=39 Score=36.03 Aligned_cols=70 Identities=20% Similarity=0.305 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCCCEEEEeccc----cccccccccCcccCccccccHHHHHHHHHcCCcCch--hhhHHHHHHHHhHhce
Q 006203 302 FRDTLIEQAEQGVDYFTIHAGV----LLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFA--YEHWDEILDICNQYDV 375 (657)
Q Consensus 302 ~~d~ieeQAeqGVDf~TIHaGv----~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpl--Y~~FD~ileI~k~YDV 375 (657)
++-+++.-.+.|+..+.+|-|. +-++++++..-+.++.++||++| ...+-+|+ -+.++++++.+++|++
T Consensus 18 i~~vv~~a~~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~L-----gtsR~~~~~~~~~~~~~~~~l~~~~I 92 (301)
T TIGR02482 18 IRAVVRTAIYHGFEVYGIRRGYKGLINGEIKPLESKNVSGIIHRGGTIL-----GTARCPEFKTEEGRQKAVENLKKLGI 92 (301)
T ss_pred HHHHHHHHHHCCCEEEEEecCHHHhcCCCeEeCCHHHHhhHHhCCCcee-----ccCCCCccCCHHHHHHHHHHHHHcCC
Confidence 3445555556789999999886 34566667778889999999976 33444454 3679999999999986
Q ss_pred e
Q 006203 376 A 376 (657)
Q Consensus 376 t 376 (657)
.
T Consensus 93 d 93 (301)
T TIGR02482 93 E 93 (301)
T ss_pred C
Confidence 4
No 203
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=35.57 E-value=53 Score=34.05 Aligned_cols=88 Identities=24% Similarity=0.277 Sum_probs=55.2
Q ss_pred HHHHHHhCCCEeeecCCCC--ChHHHH-----HHHHh----cC--CCcccc-chhhhHH----HHh---c-------Ccc
Q 006203 243 VQWATMWGADTVMDLSTGR--HIHETR-----EWILR----NS--AVPVGT-VPIYQAL----EKV---D-------GIA 294 (657)
Q Consensus 243 l~~A~~~GADtvMDLSTGg--di~~~R-----~~Il~----ns--pvPVGT-VPIYqA~----~k~---~-------g~~ 294 (657)
+....+.|+|.||=|+||. ++..-+ ..||. .- .-.+|- ||.=+-. .|- . -++
T Consensus 80 i~~le~~G~d~illlCTG~F~~l~~~~~lleP~ril~~lV~al~~~~~vGVivP~~eQ~~~~~~kW~~l~~~~~~a~asP 159 (221)
T PF07302_consen 80 IAQLEAQGYDVILLLCTGEFPGLTARNPLLEPDRILPPLVAALVGGHQVGVIVPLPEQIAQQAEKWQPLGNPVVVAAASP 159 (221)
T ss_pred HHHHHHCCCCEEEEeccCCCCCCCCCcceeehHHhHHHHHHHhcCCCeEEEEecCHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 4456678999999999996 444322 11111 11 023332 3443322 121 1 133
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEec-ccccccccc
Q 006203 295 ENLSWEVFRDTLIEQAEQGVDYFTIHA-GVLLRYIPL 330 (657)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDf~TIHa-Gv~~~~v~~ 330 (657)
-.-+++.|.+.-++-.+||.|++-+|| |.+.++-..
T Consensus 160 y~~~~~~l~~Aa~~L~~~gadlIvLDCmGYt~~~r~~ 196 (221)
T PF07302_consen 160 YEGDEEELAAAARELAEQGADLIVLDCMGYTQEMRDI 196 (221)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHH
Confidence 336899999999999999999999999 887766553
No 204
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=35.54 E-value=31 Score=33.89 Aligned_cols=63 Identities=22% Similarity=0.219 Sum_probs=33.5
Q ss_pred HHHHHHHHhCCCEee-ecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 006203 241 YKVQWATMWGADTVM-DLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTI 319 (657)
Q Consensus 241 eKl~~A~~~GADtvM-DLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGVDf~TI 319 (657)
+.+..|+++|+|.|| |=.+-.++.++.+.+-...+= ....+-|.+. .+.|.+-++.|||++.+
T Consensus 91 ee~~ea~~~g~d~I~lD~~~~~~~~~~v~~l~~~~~~---------v~ie~SGGI~-------~~ni~~ya~~gvD~isv 154 (169)
T PF01729_consen 91 EEAEEALEAGADIIMLDNMSPEDLKEAVEELRELNPR---------VKIEASGGIT-------LENIAEYAKTGVDVISV 154 (169)
T ss_dssp HHHHHHHHTT-SEEEEES-CHHHHHHHHHHHHHHTTT---------SEEEEESSSS-------TTTHHHHHHTT-SEEEE
T ss_pred HHHHHHHHhCCCEEEecCcCHHHHHHHHHHHhhcCCc---------EEEEEECCCC-------HHHHHHHHhcCCCEEEc
Confidence 456678999999998 444444444444433222211 0112223222 25677779999999876
No 205
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=35.24 E-value=2.8e+02 Score=30.28 Aligned_cols=65 Identities=12% Similarity=-0.003 Sum_probs=40.7
Q ss_pred cCchh-hhHHHHHHHHhHhceeEeccCCCC------CCCccCCCcHHHH-----HHHHHHHHHHHHHHhcCCeEEee
Q 006203 356 ENFAY-EHWDEILDICNQYDVALSIGDGLR------PGSIYDANDTAQF-----AELLTQGELTRRAWDKDVQVMNE 420 (657)
Q Consensus 356 ENplY-~~FD~ileI~k~YDVtlSLGDGLR------PG~i~DA~D~AQ~-----~EL~~LGEL~krA~e~gVQVMIE 420 (657)
|=|+- ..++.+-++.+..++-|.+|..+. +=.-.++-|-.|+ .-+...-++.+.|..+|++||+=
T Consensus 238 EeP~~~~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h 314 (404)
T PRK15072 238 EDPTPAENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALYQVRTGSH 314 (404)
T ss_pred ECCCCccCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHcCCceeec
Confidence 44552 467888889999999999998762 0011223333332 22333336777899999999973
No 206
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=35.22 E-value=1.9e+02 Score=31.05 Aligned_cols=77 Identities=16% Similarity=0.129 Sum_probs=50.4
Q ss_pred ChHHHHHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCC
Q 006203 235 SIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGV 314 (657)
Q Consensus 235 ~ie~EveKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGV 314 (657)
++++=++.++...++|||.|+=-+ -.+++++|+. .+..++|+=..++ . ++..-.++.++ -.+-||
T Consensus 164 g~deAI~Ra~aY~eAGAD~ifi~~-~~~~~~i~~~-~~~~~~Pl~~n~~-----~-~~~~p~~s~~~-------L~~lGv 228 (292)
T PRK11320 164 GLDAAIERAQAYVEAGADMIFPEA-MTELEMYRRF-ADAVKVPILANIT-----E-FGATPLFTTEE-------LASAGV 228 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecC-CCCHHHHHHH-HHhcCCCEEEEec-----c-CCCCCCCCHHH-------HHHcCC
Confidence 589999999999999999999654 3467777754 3445555422221 1 23333445444 367899
Q ss_pred CEEEEecccccc
Q 006203 315 DYFTIHAGVLLR 326 (657)
Q Consensus 315 Df~TIHaGv~~~ 326 (657)
.++++-....+.
T Consensus 229 ~~v~~~~~~~~a 240 (292)
T PRK11320 229 AMVLYPLSAFRA 240 (292)
T ss_pred cEEEEChHHHHH
Confidence 999887654433
No 207
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=35.20 E-value=74 Score=34.54 Aligned_cols=65 Identities=20% Similarity=0.183 Sum_probs=41.2
Q ss_pred HHHHHHHHH------hCCCEeeecCCC--------CChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHH
Q 006203 240 VYKVQWATM------WGADTVMDLSTG--------RHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDT 305 (657)
Q Consensus 240 veKl~~A~~------~GADtvMDLSTG--------gdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ 305 (657)
++-+..|++ +|||-|| |=.- .+.+++++.+-..- +.+| ++-.||. . .++
T Consensus 213 leea~ea~~~~~~~~agaDiIm-LDnm~~~~~~~~~~~e~l~~av~~~~----~~~~----lEaSGGI-t-------~~n 275 (308)
T PLN02716 213 LEEVKEVLEYLSDTKTSLTRVM-LDNMVVPLENGDVDVSMLKEAVELIN----GRFE----TEASGNV-T-------LDT 275 (308)
T ss_pred HHHHHHHHHhcccccCCCCEEE-eCCCcccccccCCCHHHHHHHHHhhC----CCce----EEEECCC-C-------HHH
Confidence 345666788 9999998 3222 26777777663211 3444 2323332 2 478
Q ss_pred HHHHHhcCCCEEEEec
Q 006203 306 LIEQAEQGVDYFTIHA 321 (657)
Q Consensus 306 ieeQAeqGVDf~TIHa 321 (657)
|.+-|+-||||+.+=+
T Consensus 276 i~~yA~tGVD~Is~Ga 291 (308)
T PLN02716 276 VHKIGQTGVTYISSGA 291 (308)
T ss_pred HHHHHHcCCCEEEeCc
Confidence 8888999999997644
No 208
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=35.20 E-value=4.7e+02 Score=26.10 Aligned_cols=144 Identities=19% Similarity=0.205 Sum_probs=87.5
Q ss_pred ChHHHHHHHHHHHHhCCCEeeecC----CCCChHHHHHHHHhcCC----CccccchhhhHHHHhcCcc---CCCCHHHHH
Q 006203 235 SIEEEVYKVQWATMWGADTVMDLS----TGRHIHETREWILRNSA----VPVGTVPIYQALEKVDGIA---ENLSWEVFR 303 (657)
Q Consensus 235 ~ie~EveKl~~A~~~GADtvMDLS----TGgdi~~~R~~Il~nsp----vPVGTVPIYqA~~k~~g~~---~~lt~e~~~ 303 (657)
+.++=.+-++.|++.|...+ |-+ .|..-..+.+.+ +..+ +-|- -|.+... .+.+.+.++
T Consensus 27 ~~~~~~~~l~~A~~~Gi~~i-DTA~~Yg~g~sE~~lG~al-~~~~~R~~~~i~--------tK~~~~~~~~~~~~~~~~~ 96 (285)
T cd06660 27 DEEEAAAAVRAALDAGINFI-DTADVYGDGESEELLGEAL-KERGPREEVFIA--------TKVGPRPGDGRDLSPEHIR 96 (285)
T ss_pred CHHHHHHHHHHHHHcCCCeE-ECccccCCCCCHHHHHHHH-hccCCcCcEEEE--------eeecCCCCCCCCCCHHHHH
Confidence 45555666899999999886 644 122344444443 3322 1111 1221111 346788888
Q ss_pred HHHHHHHhc----CCCEEEEecccc-----ccc---cc--cccC--cccCccccccHHHHHHHHHc--------CCcCch
Q 006203 304 DTLIEQAEQ----GVDYFTIHAGVL-----LRY---IP--LTAK--RMTGIVSRGGSIHAKWCLAY--------HKENFA 359 (657)
Q Consensus 304 d~ieeQAeq----GVDf~TIHaGv~-----~~~---v~--~~~~--RvtgIVSRGGSi~a~Wml~h--------~~ENpl 359 (657)
+.|++..+. =+|.+-+|.=-. .+. ++ +.++ |-.||-+-+...+.+.+... -.=||+
T Consensus 97 ~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~ 176 (285)
T cd06660 97 RAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLL 176 (285)
T ss_pred HHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcc
Confidence 888877663 378888997211 111 12 1334 77888888877777776552 234888
Q ss_pred hhhHH-HHHHHHhHhceeEe----ccCCCCCCCc
Q 006203 360 YEHWD-EILDICNQYDVALS----IGDGLRPGSI 388 (657)
Q Consensus 360 Y~~FD-~ileI~k~YDVtlS----LGDGLRPG~i 388 (657)
+..++ .+++.|+++++.+- ||-|+..+..
T Consensus 177 ~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~ 210 (285)
T cd06660 177 DRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKY 210 (285)
T ss_pred cCchHHHHHHHHHHcCcEEEEeccccCceecCCC
Confidence 87777 79999999999884 5555554443
No 209
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=35.10 E-value=4.4e+02 Score=27.55 Aligned_cols=150 Identities=15% Similarity=0.156 Sum_probs=76.3
Q ss_pred CChHHHHHHHHHHHHhCCCEeeecCCCCCh----HHHH---HHHHhcCCCccccchhhh------HHHHhcC--ccCCCC
Q 006203 234 SSIEEEVYKVQWATMWGADTVMDLSTGRHI----HETR---EWILRNSAVPVGTVPIYQ------ALEKVDG--IAENLS 298 (657)
Q Consensus 234 ~~ie~EveKl~~A~~~GADtvMDLSTGgdi----~~~R---~~Il~nspvPVGTVPIYq------A~~k~~g--~~~~lt 298 (657)
.|.+.=++++..-++.|||- .|+-.+-.- ..++ +.|.+.+.+|+ .|=-|. |++.+.| -+-+++
T Consensus 22 ~d~~~i~~~A~~~~~~GAdi-IDVg~~~~~~eE~~r~~~~v~~l~~~~~~pl-sIDT~~~~v~eaaL~~~~G~~iINsIs 99 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADY-LDVNAGTAVEEEPETMEWLVETVQEVVDVPL-CIDSPNPAAIEAGLKVAKGPPLINSVS 99 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCE-EEECCCCCchhHHHHHHHHHHHHHHhCCCCE-EEeCCCHHHHHHHHHhCCCCCEEEeCC
Confidence 35555566677778889884 477654332 1122 22333334444 222222 2333223 223333
Q ss_pred H-----HHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHh
Q 006203 299 W-----EVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQY 373 (657)
Q Consensus 299 ~-----e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~Y 373 (657)
. +.++.++ ++-|+.++.+|.. -+-+|.+... -.+.|.++++.|.++
T Consensus 100 ~~~~~~~~~~~l~---~~~g~~vv~m~~~--~~g~P~t~~~------------------------~~~~l~~~v~~a~~~ 150 (261)
T PRK07535 100 AEGEKLEVVLPLV---KKYNAPVVALTMD--DTGIPKDAED------------------------RLAVAKELVEKADEY 150 (261)
T ss_pred CCCccCHHHHHHH---HHhCCCEEEEecC--CCCCCCCHHH------------------------HHHHHHHHHHHHHHc
Confidence 3 3344433 4569999988852 1123432111 168889999999999
Q ss_pred ce---eEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe
Q 006203 374 DV---ALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN 419 (657)
Q Consensus 374 DV---tlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMI 419 (657)
.| -|=|==|+=|- +.+..|..|++..-+..+.-+- |+.+++
T Consensus 151 GI~~~~IilDPgi~~~----~~~~~~~~~~l~~i~~l~~~~p-g~p~l~ 194 (261)
T PRK07535 151 GIPPEDIYIDPLVLPL----SAAQDAGPEVLETIRRIKELYP-KVHTTC 194 (261)
T ss_pred CCCHhHEEEeCCCCcc----cCChHHHHHHHHHHHHHHHhCC-CCCEEE
Confidence 88 45554444431 2334455554433333332111 788776
No 210
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=35.03 E-value=1.1e+02 Score=32.84 Aligned_cols=63 Identities=35% Similarity=0.441 Sum_probs=39.4
Q ss_pred HHHHHHHhCCCEeeecCCCCChHHHHHHHHh--cCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 006203 242 KVQWATMWGADTVMDLSTGRHIHETREWILR--NSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTI 319 (657)
Q Consensus 242 Kl~~A~~~GADtvMDLSTGgdi~~~R~~Il~--nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGVDf~TI 319 (657)
-+..|+++|||.|| |= .-+++++|+++-. ... +.|. ++-.||. | .+.|++-|+-||||+.+
T Consensus 211 ea~eal~~gaDiI~-LD-nm~~e~vk~av~~~~~~~---~~v~----ieaSGGI----~----~~ni~~yA~tGvD~Is~ 273 (289)
T PRK07896 211 QLDEVLAEGAELVL-LD-NFPVWQTQEAVQRRDARA---PTVL----LESSGGL----T----LDTAAAYAETGVDYLAV 273 (289)
T ss_pred HHHHHHHcCCCEEE-eC-CCCHHHHHHHHHHHhccC---CCEE----EEEECCC----C----HHHHHHHHhcCCCEEEe
Confidence 34557899999998 32 4468888888732 111 1221 1222332 2 37788899999999976
Q ss_pred ec
Q 006203 320 HA 321 (657)
Q Consensus 320 Ha 321 (657)
=+
T Consensus 274 ga 275 (289)
T PRK07896 274 GA 275 (289)
T ss_pred Ch
Confidence 43
No 211
>PRK08227 autoinducer 2 aldolase; Validated
Probab=35.02 E-value=87 Score=33.13 Aligned_cols=100 Identities=15% Similarity=0.156 Sum_probs=70.0
Q ss_pred HHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEecc
Q 006203 243 VQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAG 322 (657)
Q Consensus 243 l~~A~~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGVDf~TIHaG 322 (657)
++.|.+.|||-|==-.|| +.=+++++.+|+||= = .||. .. +.++|++.++++.+.|..=+++=--
T Consensus 164 aRiaaELGADiVK~~y~~----~~f~~vv~a~~vPVv-----i----aGG~-k~-~~~~~L~~v~~ai~aGa~Gv~~GRN 228 (264)
T PRK08227 164 TRIAAEMGAQIIKTYYVE----EGFERITAGCPVPIV-----I----AGGK-KL-PERDALEMCYQAIDEGASGVDMGRN 228 (264)
T ss_pred HHHHHHHcCCEEecCCCH----HHHHHHHHcCCCcEE-----E----eCCC-CC-CHHHHHHHHHHHHHcCCceeeechh
Confidence 678899999998777776 444567778887762 1 2554 33 8899999999999999876665333
Q ss_pred ccccccc-cccCcccCccccccHHHHHHHHHcCCcC
Q 006203 323 VLLRYIP-LTAKRMTGIVSRGGSIHAKWCLAYHKEN 357 (657)
Q Consensus 323 v~~~~v~-~~~~RvtgIVSRGGSi~a~Wml~h~~EN 357 (657)
|-..-=| ...+++..||=.+-|.=.+|=+.|..+|
T Consensus 229 IfQ~~~p~~~~~al~~IVh~~~s~~eA~~~~~~~~~ 264 (264)
T PRK08227 229 IFQSEHPVAMIKAVHAVVHENETAKEAYELYLSEKN 264 (264)
T ss_pred hhccCCHHHHHHHHHHHHhCCCCHHHHHHHHHHhcC
Confidence 3222111 2347888888888888888777776554
No 212
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=34.96 E-value=95 Score=31.91 Aligned_cols=99 Identities=17% Similarity=0.248 Sum_probs=60.7
Q ss_pred eEeecCCceeEeeccccCCCCCChHHHHHHHHHHHHhCCCEe---eecCCC----CChHHHHHHHHhcCCCccccchhhh
Q 006203 213 MIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTV---MDLSTG----RHIHETREWILRNSAVPVGTVPIYQ 285 (657)
Q Consensus 213 ~~IG~~l~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADtv---MDLSTG----gdi~~~R~~Il~nspvPVGTVPIYq 285 (657)
..+|.+ +.||=+.| ...+.++=+++++.+...|||.| +|+-.. .++.++...+.+.. +.+||-=
T Consensus 9 ~~~~~~-~~~i~v~l----~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~~~~~~~~l~~~~----~~~PiI~ 79 (253)
T PRK02412 9 LVIGEG-APKIIVPI----MGKTLEEVLAEALAISKYDADIIEWRADFLEKISDVESVLAAAPAIREKF----AGKPLLF 79 (253)
T ss_pred eEeCCC-CcEEEEEe----CCCCHHHHHHHHHHHhhcCCCEEEEEechhhccCCHHHHHHHHHHHHHhc----CCCcEEE
Confidence 344555 23544444 23345555677777788899988 676644 23444444444433 2345443
Q ss_pred HHHH-h-cCccCCCCHHHHHHHHHHHHhcC-CCEEEEec
Q 006203 286 ALEK-V-DGIAENLSWEVFRDTLIEQAEQG-VDYFTIHA 321 (657)
Q Consensus 286 A~~k-~-~g~~~~lt~e~~~d~ieeQAeqG-VDf~TIHa 321 (657)
.+.. . ||. -..+.+..++.++.-++.| |||+.|=-
T Consensus 80 T~R~~~eGG~-~~~~~~~~~~ll~~~~~~~~~d~vDiEl 117 (253)
T PRK02412 80 TFRTAKEGGE-IALSDEEYLALIKAVIKSGLPDYIDVEL 117 (253)
T ss_pred EECChhhCCC-CCCCHHHHHHHHHHHHhcCCCCEEEEec
Confidence 3321 1 444 5678899999999999999 99999854
No 213
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=34.84 E-value=68 Score=34.25 Aligned_cols=63 Identities=24% Similarity=0.295 Sum_probs=40.3
Q ss_pred HHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEe
Q 006203 241 YKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIH 320 (657)
Q Consensus 241 eKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGVDf~TIH 320 (657)
+-+..|+++|||.|| | ..-++.++++++-... +.+ .++-.||. | .+.|++-|+-||||+.+=
T Consensus 204 ee~~ea~~~gaDiIm-L-Dn~s~e~l~~av~~~~----~~~----~leaSGgI----~----~~ni~~yA~tGVD~Is~g 265 (281)
T PRK06543 204 DQIEPVLAAGVDTIM-L-DNFSLDDLREGVELVD----GRA----IVEASGNV----N----LNTVGAIASTGVDVISVG 265 (281)
T ss_pred HHHHHHHhcCCCEEE-E-CCCCHHHHHHHHHHhC----CCe----EEEEECCC----C----HHHHHHHHhcCCCEEEeC
Confidence 456677889999998 3 3447777777764321 122 12222332 2 377888899999999764
Q ss_pred c
Q 006203 321 A 321 (657)
Q Consensus 321 a 321 (657)
+
T Consensus 266 a 266 (281)
T PRK06543 266 A 266 (281)
T ss_pred c
Confidence 4
No 214
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=34.66 E-value=4.5e+02 Score=25.74 Aligned_cols=62 Identities=19% Similarity=0.079 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEE
Q 006203 239 EVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFT 318 (657)
Q Consensus 239 EveKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGVDf~T 318 (657)
..+-++.+.++|+|.|. |..+ ....+.+++.+. .++++.. + .+.+ .+++-.+.|+||+.
T Consensus 69 ~~~~~~~~~~~g~d~v~-l~~~-~~~~~~~~~~~~-~i~~i~~------------v--~~~~----~~~~~~~~gad~i~ 127 (236)
T cd04730 69 FEALLEVALEEGVPVVS-FSFG-PPAEVVERLKAA-GIKVIPT------------V--TSVE----EARKAEAAGADALV 127 (236)
T ss_pred HHHHHHHHHhCCCCEEE-EcCC-CCHHHHHHHHHc-CCEEEEe------------C--CCHH----HHHHHHHcCCCEEE
Confidence 33556778889999985 6655 455666665543 3443211 0 1222 23334567999999
Q ss_pred Eec
Q 006203 319 IHA 321 (657)
Q Consensus 319 IHa 321 (657)
+|.
T Consensus 128 ~~~ 130 (236)
T cd04730 128 AQG 130 (236)
T ss_pred EeC
Confidence 986
No 215
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=34.44 E-value=5.8e+02 Score=26.96 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=15.6
Q ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecc
Q 006203 297 LSWEVFRDTLIEQAE-QGVDYFTIHAG 322 (657)
Q Consensus 297 lt~e~~~d~ieeQAe-qGVDf~TIHaG 322 (657)
++.+++.+.++.-.+ .|+.+..||+-
T Consensus 151 ~~~~~~~~~~~~~~~~~~l~l~Glh~h 177 (382)
T cd06839 151 IDVEELPAVLARIAALPNLRFVGLHIY 177 (382)
T ss_pred CCHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 345666555544333 57888777774
No 216
>PRK02227 hypothetical protein; Provisional
Probab=34.26 E-value=1.4e+02 Score=31.56 Aligned_cols=155 Identities=18% Similarity=0.176 Sum_probs=87.5
Q ss_pred HHHHHHHHHhCCCEeeec------CCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcC
Q 006203 240 VYKVQWATMWGADTVMDL------STGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQG 313 (657)
Q Consensus 240 veKl~~A~~~GADtvMDL------STGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqG 313 (657)
++.+..|++.||| |.|+ |-|.+...+=+.|.+..+ |..|+=-++ |+. .+........+..-+.-|
T Consensus 10 ~eEA~~Al~~GaD-iIDvK~P~~GaLGA~~p~vir~Iv~~~~---~~~pvSAti----GD~-p~~p~~~~~aa~~~a~~G 80 (238)
T PRK02227 10 LEEALEALAGGAD-IIDVKNPKEGSLGANFPWVIREIVAAVP---GRKPVSATI----GDV-PYKPGTISLAALGAAATG 80 (238)
T ss_pred HHHHHHHHhcCCC-EEEccCCCCCCCCCCCHHHHHHHHHHhC---CCCCceeec----cCC-CCCchHHHHHHHHHHhhC
Confidence 4567889999997 4577 445666555555665554 334443332 332 344467777888889999
Q ss_pred CCEEEEeccccc-----ccccccc--CcccCccccccHHHHHHHHHcCCcCchhhh--------HHHHHHHHhHhceeEe
Q 006203 314 VDYFTIHAGVLL-----RYIPLTA--KRMTGIVSRGGSIHAKWCLAYHKENFAYEH--------WDEILDICNQYDVALS 378 (657)
Q Consensus 314 VDf~TIHaGv~~-----~~v~~~~--~RvtgIVSRGGSi~a~Wml~h~~ENplY~~--------FD~ileI~k~YDVtlS 378 (657)
|||+-| |+-. +.++... -|-.....++-.+++ -+|.. ..+|++++++.....-
T Consensus 81 vDyVKv--Gl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVa----------v~yaD~~r~~~~~~~~l~~~a~~aGf~g~ 148 (238)
T PRK02227 81 ADYVKV--GLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVA----------AGYADAHRVGSVSPLSLPAIAADAGFDGA 148 (238)
T ss_pred CCEEEE--cCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEE----------EEecccccccCCChHHHHHHHHHcCCCEE
Confidence 999754 4321 1111100 000000011111111 12332 2389999998887766
Q ss_pred ccCCCC--CCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeC
Q 006203 379 IGDGLR--PGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEG 421 (657)
Q Consensus 379 LGDGLR--PG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEG 421 (657)
+=|.-= =+++.|-.+. ..|.+.++.|+++|.++=+=|
T Consensus 149 MlDTa~Kdg~~Lfd~l~~------~~L~~Fv~~ar~~Gl~~gLAG 187 (238)
T PRK02227 149 MLDTAIKDGKSLFDHMDE------EELAEFVAEARSHGLMSALAG 187 (238)
T ss_pred EEecccCCCcchHhhCCH------HHHHHHHHHHHHcccHhHhcc
Confidence 656532 1344555554 456677899999998887655
No 217
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=34.26 E-value=3.7e+02 Score=27.44 Aligned_cols=59 Identities=19% Similarity=0.197 Sum_probs=40.3
Q ss_pred Cchhhh-HHHHHHHHhHhcee-EeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe-eCCCCCCCCchHH
Q 006203 357 NFAYEH-WDEILDICNQYDVA-LSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN-EGPGHIPMHKIPE 432 (657)
Q Consensus 357 NplY~~-FD~ileI~k~YDVt-lSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMI-EGPGHVPl~~I~~ 432 (657)
||+|++ +++.++-|++..+. +.+- |.. ++ .+.++.+.++++|+...+ =.| +.|.+.|+.
T Consensus 86 n~~~~~G~~~fi~~~~~aG~~giiip---------Dl~----~e---e~~~~~~~~~~~g~~~i~~i~P-~T~~~~i~~ 147 (242)
T cd04724 86 NPILQYGLERFLRDAKEAGVDGLIIP---------DLP----PE---EAEEFREAAKEYGLDLIFLVAP-TTPDERIKK 147 (242)
T ss_pred CHHHHhCHHHHHHHHHHCCCcEEEEC---------CCC----HH---HHHHHHHHHHHcCCcEEEEeCC-CCCHHHHHH
Confidence 888887 89999999998874 4443 332 22 567889999999987654 333 345554443
No 218
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=34.09 E-value=4e+02 Score=29.28 Aligned_cols=68 Identities=25% Similarity=0.271 Sum_probs=36.9
Q ss_pred HHHHHHHhCCCEeeecCCCC--ChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 006203 242 KVQWATMWGADTVMDLSTGR--HIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTI 319 (657)
Q Consensus 242 Kl~~A~~~GADtvMDLSTGg--di~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGVDf~TI 319 (657)
-++.|.++|||-|.=..... ++.++++.+-+. .++++- | -+|.+.-.+.+++-.+.|+||+++
T Consensus 73 ~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~-G~~~~~-----------g---~~s~~t~~e~~~~a~~~GaD~I~~ 137 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLADDSTIEDAVRAARKY-GVRLMA-----------D---LINVPDPVKRAVELEELGVDYINV 137 (430)
T ss_pred HHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHc-CCEEEE-----------E---ecCCCCHHHHHHHHHhcCCCEEEE
Confidence 55679999999877332222 244555554432 222221 0 023222223344445679999999
Q ss_pred ecccc
Q 006203 320 HAGVL 324 (657)
Q Consensus 320 HaGv~ 324 (657)
|.|.+
T Consensus 138 ~pg~~ 142 (430)
T PRK07028 138 HVGID 142 (430)
T ss_pred Eeccc
Confidence 98874
No 219
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=33.75 E-value=2.9e+02 Score=30.23 Aligned_cols=155 Identities=12% Similarity=0.088 Sum_probs=91.8
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEec--ccccccccc--ccCcccCc---------cccccHHHHHHHHHc-----------
Q 006203 298 SWEVFRDTLIEQAEQGVDYFTIHA--GVLLRYIPL--TAKRMTGI---------VSRGGSIHAKWCLAY----------- 353 (657)
Q Consensus 298 t~e~~~d~ieeQAeqGVDf~TIHa--Gv~~~~v~~--~~~RvtgI---------VSRGGSi~a~Wml~h----------- 353 (657)
.-++|...|.+.+..|.|-+-+|. |+... ++. ..+=++++ ++|....+..|-..+
T Consensus 47 ~l~~~K~lv~~~l~~~asaILld~~yG~~a~-~~~~~~~GLil~~e~tg~d~t~~gr~~~~~~~~sve~a~~~GAdAVk~ 125 (340)
T PRK12858 47 DLVDFKLAVSEALTPYASAILLDPEYGLPAA-KVRDPNCGLLLSYEKTGYDATAPGRLPDLLDNWSVRRIKEAGADAVKL 125 (340)
T ss_pred hHHHHHHHHHHHHhhCCCEEEEccccChhhh-cccCCCCCeEEEecccccccCCCCCCccccccccHHHHHHcCCCEEEE
Confidence 457788899999999999999988 76553 221 22333331 122333455564444
Q ss_pred -----CC-----cCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHH--HHHHHHHHHHH--hcCCeE-E
Q 006203 354 -----HK-----ENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAEL--LTQGELTRRAW--DKDVQV-M 418 (657)
Q Consensus 354 -----~~-----ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL--~~LGEL~krA~--e~gVQV-M 418 (657)
.. |+--.+...+|.+-|++||+-|=|-==..|.-..|.++ .-+++. ..+.+.++++- +.||-| =
T Consensus 126 lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~-~~~a~~~p~~V~~a~r~~~~~elGaDvlK 204 (340)
T PRK12858 126 LLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKA-EEFAKVKPEKVIKTMEEFSKPRYGVDVLK 204 (340)
T ss_pred EEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCcccccc-ccccccCHHHHHHHHHHHhhhccCCeEEE
Confidence 22 12344568888999999998876510012222222222 111111 26677788888 488874 4
Q ss_pred eeCCCCC-------------CCCchHHHHHHHHHhcCCCCccccCccccc
Q 006203 419 NEGPGHI-------------PMHKIPENMQKQLEWCNEAPFYTLGPLTTD 455 (657)
Q Consensus 419 IEGPGHV-------------Pl~~I~~Nv~lqk~lC~~APfYvLGPLvTD 455 (657)
+|=||++ .-.+..+.++.|-+.|+ .||.+||==+++
T Consensus 205 ve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~-~P~vvlsgG~~~ 253 (340)
T PRK12858 205 VEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATD-LPFIFLSAGVSP 253 (340)
T ss_pred eeCCCCcccccccccccccccHHHHHHHHHHHHhhCC-CCEEEECCCCCH
Confidence 6767665 33445578888888775 899887644433
No 220
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=33.60 E-value=2e+02 Score=31.29 Aligned_cols=122 Identities=16% Similarity=0.153 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHH-HhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHH-HHhcCccCCCCHHHHHHHHHHH----
Q 006203 236 IEEEVYKVQWAT-MWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQAL-EKVDGIAENLSWEVFRDTLIEQ---- 309 (657)
Q Consensus 236 ie~EveKl~~A~-~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~-~k~~g~~~~lt~e~~~d~ieeQ---- 309 (657)
.-+-++|+.-++ +.|+-.++-|.-+|--... . .....|++-.++-... ......+..||.+++-++++.-
T Consensus 81 ~i~~~~~l~~~vh~~G~~i~~QL~H~G~~~~~--~--~~~~~~~~ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA 156 (370)
T cd02929 81 DIRNLAAMTDAVHKHGALAGIELWHGGAHAPN--R--ESRETPLGPSQLPSEFPTGGPVQAREMDKDDIKRVRRWYVDAA 156 (370)
T ss_pred HHHHHHHHHHHHHHCCCeEEEecccCCCCCCc--c--CCCCCccCCCCCCCCccccCCCCCccCCHHHHHHHHHHHHHHH
Confidence 345556655444 5688889999877732110 0 0001222221111100 0012346789999988887755
Q ss_pred ---HhcCCCEEEEeccc---cccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHH
Q 006203 310 ---AEQGVDYFTIHAGV---LLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDIC 370 (657)
Q Consensus 310 ---AeqGVDf~TIHaGv---~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~ 370 (657)
.+.|.|.+=||+|- .-+.+.-..++.|+ -.|||+. ++-.|+.|-.+.|-+-+
T Consensus 157 ~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD--~yGGsle-------nR~Rf~~eii~aIr~~v 214 (370)
T cd02929 157 LRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTD--EYGGSLE-------NRARFWRETLEDTKDAV 214 (370)
T ss_pred HHHHHcCCCEEEEcccccchHHHhhCccccCCcc--ccCCChH-------hhhHHHHHHHHHHHHHc
Confidence 35799999999974 33444334456666 5799984 33455666555555544
No 221
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=33.56 E-value=1.1e+02 Score=29.97 Aligned_cols=79 Identities=15% Similarity=0.106 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhCCCEee----ecCCCCCh---HHHHHHHHhcCCCcccc--chhhhH--HHHhcC--c---cCCCCHH
Q 006203 237 EEEVYKVQWATMWGADTVM----DLSTGRHI---HETREWILRNSAVPVGT--VPIYQA--LEKVDG--I---AENLSWE 300 (657)
Q Consensus 237 e~EveKl~~A~~~GADtvM----DLSTGgdi---~~~R~~Il~nspvPVGT--VPIYqA--~~k~~g--~---~~~lt~e 300 (657)
+.=++-++....+|||.|- |-..++++ ..+|+.+ +.||-++. ++-||+ +.+.|- . ..+++.+
T Consensus 31 ~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v--~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~ 108 (217)
T cd00331 31 FDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAV--SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDE 108 (217)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhc--CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHH
Confidence 3446677888889999874 22344444 5555543 33443343 444443 223221 1 2245555
Q ss_pred HHHHHHHHHHhcCCCEE
Q 006203 301 VFRDTLIEQAEQGVDYF 317 (657)
Q Consensus 301 ~~~d~ieeQAeqGVDf~ 317 (657)
.+.+.+++...-|++.+
T Consensus 109 ~~~~~~~~~~~~g~~~~ 125 (217)
T cd00331 109 QLKELYELARELGMEVL 125 (217)
T ss_pred HHHHHHHHHHHcCCeEE
Confidence 66666666666677654
No 222
>PRK13206 ureC urease subunit alpha; Reviewed
Probab=33.55 E-value=1.4e+02 Score=34.98 Aligned_cols=78 Identities=27% Similarity=0.431 Sum_probs=52.2
Q ss_pred HHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCC
Q 006203 304 DTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGL 383 (657)
Q Consensus 304 d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSLGDGL 383 (657)
+.|++|.+.|+..|.+|- .|- -+ -..++++|+.+++||+.+.+
T Consensus 210 ~~L~el~~aGA~GfKi~~--------------------------d~g-----~t--~~~i~~aL~~A~~~gv~V~i---- 252 (573)
T PRK13206 210 EALWEQLRGGAGGFKLHE--------------------------DWG-----ST--PAAIDACLRVADAAGVQVAL---- 252 (573)
T ss_pred HHHHHHHHCCCcEEeecC--------------------------ccC-----CC--HHHHHHHHHHHHHhCCEEEE----
Confidence 478999999999999992 110 11 23789999999999998874
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCC--CCCC
Q 006203 384 RPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGP--GHIP 426 (657)
Q Consensus 384 RPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGP--GHVP 426 (657)
-.|...++-|.|. ++.....|.-- -.-+||. ||+|
T Consensus 253 ----Hadtlne~g~~E~-t~aa~~gr~iH---~~H~egaggghap 289 (573)
T PRK13206 253 ----HSDTLNEAGFVED-TLAAIAGRSIH---AYHTEGAGGGHAP 289 (573)
T ss_pred ----ECCCccccchhhH-HHHHhcCCeEE---EEeccCCCcCccc
Confidence 3455556677777 55554433211 1236764 7988
No 223
>PRK07572 cytosine deaminase; Validated
Probab=33.19 E-value=1.8e+02 Score=31.48 Aligned_cols=44 Identities=14% Similarity=0.070 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHhHhceeE--eccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCe
Q 006203 360 YEHWDEILDICNQYDVAL--SIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQ 416 (657)
Q Consensus 360 Y~~FD~ileI~k~YDVtl--SLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQ 416 (657)
.++++.+++.+++|++-+ =+..+..+.. ..+-.++++.+++|++
T Consensus 190 ~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~-------------~~~~~~~~~~~~~G~~ 235 (426)
T PRK07572 190 AESVRLLCEIAAERGLRVDMHCDESDDPLS-------------RHIETLAAETQRLGLQ 235 (426)
T ss_pred HHHHHHHHHHHHHcCCCeEEEECCCCChhH-------------HHHHHHHHHHHHhCCC
Confidence 389999999999999655 4545544321 1122456777888876
No 224
>PRK07328 histidinol-phosphatase; Provisional
Probab=33.14 E-value=1e+02 Score=31.56 Aligned_cols=136 Identities=17% Similarity=0.202 Sum_probs=81.0
Q ss_pred eecCCCCChHHHHHHHHhc--CCCccccch------hhh--HHHHh-cCccCCCCHHHHHHHHHHHHhc-CCCEEEEecc
Q 006203 255 MDLSTGRHIHETREWILRN--SAVPVGTVP------IYQ--ALEKV-DGIAENLSWEVFRDTLIEQAEQ-GVDYFTIHAG 322 (657)
Q Consensus 255 MDLSTGgdi~~~R~~Il~n--spvPVGTVP------IYq--A~~k~-~g~~~~lt~e~~~d~ieeQAeq-GVDf~TIHaG 322 (657)
+|..- +.++.+++ +|+. -..-||+|= ++. -.... .++ .+--++.+|+.+.+-++. .+|++ =|.+
T Consensus 87 ~~~~~-~~~~~~~~-~l~~~~~D~vigSvH~~~~~~~~~~~~~~~~~~~~-~~~~~~~Y~~~~~~~~~~~~~dvl-gH~d 162 (269)
T PRK07328 87 ADYHP-GTEEFLER-LLEAYPFDYVIGSVHYLGAWGFDNPDFVAEYEERD-LDELYRRYFALVEQAARSGLFDII-GHPD 162 (269)
T ss_pred ecccC-CcHHHHHH-HHHhCCCCeEEEEEeecCCcCCCChhHHHHHhcCC-HHHHHHHHHHHHHHHHHcCCCCEe-eCcc
Confidence 55543 46666666 4444 345666552 211 11111 122 222346667777776664 56665 3776
Q ss_pred ccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccC-CCCCCCccCCCcHHHHHHHH
Q 006203 323 VLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGD-GLRPGSIYDANDTAQFAELL 401 (657)
Q Consensus 323 v~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSLGD-GLRPG~i~DA~D~AQ~~EL~ 401 (657)
+-+.+-. + .+-.+...+++|++.|+++|+.|=+=- |||-++- |..
T Consensus 163 ~i~~~~~----~--------------------~~~~~~~~~~~il~~~~~~g~~lEiNt~~~r~~~~----------~~y 208 (269)
T PRK07328 163 LIKKFGH----R--------------------PREDLTELYEEALDVIAAAGLALEVNTAGLRKPVG----------EIY 208 (269)
T ss_pred HHHHcCC----C--------------------CchhHHHHHHHHHHHHHHcCCEEEEEchhhcCCCC----------CCC
Confidence 4332211 0 011245778999999999999985543 7887641 234
Q ss_pred HHHHHHHHHHhcCCeEEeeCCCCCCCC
Q 006203 402 TQGELTRRAWDKDVQVMNEGPGHIPMH 428 (657)
Q Consensus 402 ~LGEL~krA~e~gVQVMIEGPGHVPl~ 428 (657)
-..++.++|.+.|+.+.|=.=-|-|-+
T Consensus 209 p~~~il~~~~~~g~~itigSDAH~~~~ 235 (269)
T PRK07328 209 PSPALLRACRERGIPVVLGSDAHRPEE 235 (269)
T ss_pred CCHHHHHHHHHcCCCEEEeCCCCCHHH
Confidence 456889999999999887766788844
No 225
>PRK00957 methionine synthase; Provisional
Probab=33.07 E-value=79 Score=32.81 Aligned_cols=176 Identities=11% Similarity=0.121 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhH-hc-e--
Q 006203 300 EVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQ-YD-V-- 375 (657)
Q Consensus 300 e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~-YD-V-- 375 (657)
+.+.++|++|.+.|+|++| +--.+++.+.....++-|+- |..+..+ +....++|+.++|.++.+++++ +| +
T Consensus 36 ~ai~~~v~~q~~~Gld~vt-dGe~r~~~~~~f~~~l~G~~--~~~vvg~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~v 110 (305)
T PRK00957 36 PAIEEAVADQVKAGIDIIS-DGQVRGDMVEIFASNMPGFD--GKRVIGR--VEPPAKPITLKDLKYAKKVAKKKDPNKGV 110 (305)
T ss_pred HHHHHHHHHHHHhCCCeec-CCCccCchHHHHHhcCCCcc--CCeEEEe--ecCCCCCCcHHHHHHHHHHHhccCCCCce
Confidence 4577899999999999985 44454455444556777762 3222100 0001257999999999999875 43 1
Q ss_pred e------EeccCCCCCCCccCCC-cHHHHHH-HHHHHHHHHHHHhcCCe-EEeeCCCCC-CCCchHHHHHHHHHhcCCCC
Q 006203 376 A------LSIGDGLRPGSIYDAN-DTAQFAE-LLTQGELTRRAWDKDVQ-VMNEGPGHI-PMHKIPENMQKQLEWCNEAP 445 (657)
Q Consensus 376 t------lSLGDGLRPG~i~DA~-D~AQ~~E-L~~LGEL~krA~e~gVQ-VMIEGPGHV-Pl~~I~~Nv~lqk~lC~~AP 445 (657)
. ++|-..++....++.. |..-+.. +..+.+.++...++|+. |.|.=|.=. -+...+.-.+.-+++..+..
T Consensus 111 K~~i~GP~Tla~~~~~~~~y~~~~~~~~~~dla~~~~~~i~~l~~~G~~~IqiDEP~l~~~~~~~~~~~~~~~~~~~~i~ 190 (305)
T PRK00957 111 KGIITGPSTLAYSLRVEPFYSDNKDEELIYDLARALRKEAEALEKAGVAMIQIDEPILSTGAYDLEVAKKAIDIITKGLN 190 (305)
T ss_pred eEEecCHHHHHhhcccccccCCccHHHHHHHHHHHHHHHHHHHHHcCCCEEEecChhhhcCCchHHHHHHHHHHHHHhhC
Confidence 1 2344444432244433 1222222 34455666667788986 355555111 12223333333344433332
Q ss_pred ccccCccccccCCCchhHHHhHHHHHhhhcccc--eeeecCchhhc
Q 006203 446 FYTLGPLTTDIAPGYDHITSAIGAANIGALGTA--LLCYVTPKEHL 489 (657)
Q Consensus 446 fYvLGPLvTDIApGYDHITsAIGaA~aa~~Gad--fLCYVTPaEHL 489 (657)
.++.+-+--+|+.|...+.. .|+| .|-|+...+.|
T Consensus 191 ----~~v~lH~CG~~~~i~~~l~~-----~~vd~i~ld~~~~~~~l 227 (305)
T PRK00957 191 ----VPVAMHVCGDVSNIIDDLLK-----FNVDILDHEFASNKKNL 227 (305)
T ss_pred ----CceEEEECCCcHHHHHHHHh-----CCCCEEEEeecCCCCCH
Confidence 23444555678777666632 3444 45554444433
No 226
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=32.63 E-value=6.3e+02 Score=26.90 Aligned_cols=120 Identities=15% Similarity=0.149 Sum_probs=68.9
Q ss_pred cCCceeEeeccccCCCCCChHHHHHHHHHHHH-h--CCCEeeecCCCCChHHHHHHHHh---------cCCCccccchhh
Q 006203 217 RNFLVKVNANIGNSAVASSIEEEVYKVQWATM-W--GADTVMDLSTGRHIHETREWILR---------NSAVPVGTVPIY 284 (657)
Q Consensus 217 ~~l~tKVNANIGtS~~~~~ie~EveKl~~A~~-~--GADtvMDLSTGgdi~~~R~~Il~---------nspvPVGTVPIY 284 (657)
+.|++||.. .+++++++.++...+ . +.+-.+|--.+=+.++.++.+=+ .-|+|....=-|
T Consensus 160 ~~~KiKvg~--------~~~~~d~~~v~avr~~~g~~~~l~iDaN~~~~~~~A~~~~~~l~~~~~~~iEeP~~~~~~~~~ 231 (365)
T cd03318 160 RRFKLKMGA--------RPPADDLAHVEAIAKALGDRASVRVDVNQAWDESTAIRALPRLEAAGVELIEQPVPRENLDGL 231 (365)
T ss_pred eEEEEEeCC--------CChHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHhcCcceeeCCCCcccHHHH
Confidence 456777631 256777766655433 3 35567788777788777664322 345666665556
Q ss_pred hHHHHhcCccC-----CCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCch
Q 006203 285 QALEKVDGIAE-----NLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFA 359 (657)
Q Consensus 285 qA~~k~~g~~~-----~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpl 359 (657)
+.|.+..+.+. -.+.+++++.|+. +.||++-+-. .|+-|
T Consensus 232 ~~l~~~~~~pia~dE~~~~~~~~~~~i~~---~~~d~~~~d~-----------~~~GG---------------------- 275 (365)
T cd03318 232 ARLRSRNRVPIMADESVSGPADAFELARR---GAADVFSLKI-----------AKSGG---------------------- 275 (365)
T ss_pred HHHHhhcCCCEEcCcccCCHHHHHHHHHh---CCCCeEEEee-----------cccCC----------------------
Confidence 66654422221 1244555555543 4466653211 12222
Q ss_pred hhhHHHHHHHHhHhceeEecc
Q 006203 360 YEHWDEILDICNQYDVALSIG 380 (657)
Q Consensus 360 Y~~FD~ileI~k~YDVtlSLG 380 (657)
.+.+-+++++|++|++.+..|
T Consensus 276 it~~~~~~~~a~~~gi~~~~~ 296 (365)
T cd03318 276 LRRAQKVAAIAEAAGIALYGG 296 (365)
T ss_pred HHHHHHHHHHHHHcCCceeec
Confidence 267788899999999887765
No 227
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=32.39 E-value=1.6e+02 Score=29.37 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=30.4
Q ss_pred CCCCCCccCCCcHHHHHHHHHHH------------------HHHHHHHhcCCeEEeeCC
Q 006203 382 GLRPGSIYDANDTAQFAELLTQG------------------ELTRRAWDKDVQVMNEGP 422 (657)
Q Consensus 382 GLRPG~i~DA~D~AQ~~EL~~LG------------------EL~krA~e~gVQVMIEGP 422 (657)
|++|=...-+.|-+=.-..+.+. .|+++++++|++|++=|.
T Consensus 79 Gf~pv~~kG~~Dv~laIDame~~~~~~iD~~vLvSgD~DF~~Lv~~lre~G~~V~v~g~ 137 (160)
T TIGR00288 79 GFEPIIVAGDVDVRMAVEAMELIYNPNIDAVALVTRDADFLPVINKAKENGKETIVIGA 137 (160)
T ss_pred CceEEEecCcccHHHHHHHHHHhccCCCCEEEEEeccHhHHHHHHHHHHCCCEEEEEeC
Confidence 55554444478877666666553 799999999999999995
No 228
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=32.29 E-value=5.6e+02 Score=27.92 Aligned_cols=114 Identities=19% Similarity=0.121 Sum_probs=78.3
Q ss_pred cCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHH----------HHHHHHHhcCCeEEeeCC---
Q 006203 356 ENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQG----------ELTRRAWDKDVQVMNEGP--- 422 (657)
Q Consensus 356 ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LG----------EL~krA~e~gVQVMIEGP--- 422 (657)
+|++.+++|-||+-++-==|++|+|. +....++.+..+| +.+++|.+.|+-.+|+.+
T Consensus 89 ~~~~~~~~~~ii~~~~vpvv~~~~g~----------~~~~~i~~~~~~g~~v~~~v~~~~~A~~~~~~G~d~vI~~g~eA 158 (336)
T COG2070 89 RNAAEAGVDAIIEGAGVPVVSTSFGA----------PPAEFVARLKAAGIKVIHSVITVREALKAERAGADAVIAQGAEA 158 (336)
T ss_pred ccchHHhhhhHHhcCCCCEEeccCCC----------CcHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEecCCcC
Confidence 78889999988877666667888886 4455666666666 678999999999988753
Q ss_pred -CCCC----CCchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhhcccceeeec
Q 006203 423 -GHIP----MHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLCYV 483 (657)
Q Consensus 423 -GHVP----l~~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGYDHITsAIGaA~aa~~GadfLCYV 483 (657)
||.= .-....=+..-.+.+++-|+-.-|= |+-|-+=-++=.=||-+.+.|+.||+-.
T Consensus 159 GGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGG----I~dg~~i~AAlalGA~gVq~GT~Fl~t~ 220 (336)
T COG2070 159 GGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGG----IADGRGIAAALALGADGVQMGTRFLATK 220 (336)
T ss_pred CCcCCCCCCCccHHHHHHHHHHHhcCCCEEEecC----ccChHHHHHHHHhccHHHHhhhhhhccc
Confidence 8954 3333444555555666556655554 5555443333344677889999999763
No 229
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=32.10 E-value=94 Score=29.96 Aligned_cols=65 Identities=22% Similarity=0.185 Sum_probs=37.7
Q ss_pred HHHHHHhCCCEee-ecCCC-CChHHHHHHHHhcCCCccccchhhhHHHHhcCccCC-CCHHHHHHHHHHHHhcCCCEEEE
Q 006203 243 VQWATMWGADTVM-DLSTG-RHIHETREWILRNSAVPVGTVPIYQALEKVDGIAEN-LSWEVFRDTLIEQAEQGVDYFTI 319 (657)
Q Consensus 243 l~~A~~~GADtvM-DLSTG-gdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~-lt~e~~~d~ieeQAeqGVDf~TI 319 (657)
++.+.++|||.|. ...++ .++.++-+++-+ ..+++|- + ++....++.+++-.+.|+||+++
T Consensus 69 ~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~-~g~~~~~---------------~~~~~~t~~~~~~~~~~~g~d~v~~ 132 (206)
T TIGR03128 69 AEQAFAAGADIVTVLGVADDATIKGAVKAAKK-HGKEVQV---------------DLINVKDKVKRAKELKELGADYIGV 132 (206)
T ss_pred HHHHHHcCCCEEEEeccCCHHHHHHHHHHHHH-cCCEEEE---------------EecCCCChHHHHHHHHHcCCCEEEE
Confidence 4558899999884 22222 245666666543 3343332 2 23333444454445669999999
Q ss_pred eccc
Q 006203 320 HAGV 323 (657)
Q Consensus 320 HaGv 323 (657)
+.|.
T Consensus 133 ~pg~ 136 (206)
T TIGR03128 133 HTGL 136 (206)
T ss_pred cCCc
Confidence 8764
No 230
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=31.97 E-value=39 Score=35.90 Aligned_cols=80 Identities=14% Similarity=0.137 Sum_probs=51.0
Q ss_pred ChHHHHHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCC
Q 006203 235 SIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGV 314 (657)
Q Consensus 235 ~ie~EveKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGV 314 (657)
++++=++.++...++|||.|+=-+. .+++++++ +.+..++|+=..++ . +|....+|.+ +-.+-||
T Consensus 159 g~deAI~Ra~ay~~AGAD~vfi~g~-~~~e~i~~-~~~~i~~Pl~~n~~-----~-~~~~p~~s~~-------eL~~lGv 223 (285)
T TIGR02317 159 GLDAAIERAKAYVEAGADMIFPEAL-TSLEEFRQ-FAKAVKVPLLANMT-----E-FGKTPLFTAD-------ELREAGY 223 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCC-CCHHHHHH-HHHhcCCCEEEEec-----c-CCCCCCCCHH-------HHHHcCC
Confidence 5899999999999999999995432 35666653 44555555521111 1 1222334433 3467899
Q ss_pred CEEEEeccccccccc
Q 006203 315 DYFTIHAGVLLRYIP 329 (657)
Q Consensus 315 Df~TIHaGv~~~~v~ 329 (657)
.++.+-....+..+.
T Consensus 224 ~~v~~~~~~~~aa~~ 238 (285)
T TIGR02317 224 KMVIYPVTAFRAMNK 238 (285)
T ss_pred cEEEEchHHHHHHHH
Confidence 999988766555444
No 231
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=31.93 E-value=4.4e+02 Score=28.32 Aligned_cols=135 Identities=19% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCEEEEec--cccccccc--cccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHh-c
Q 006203 300 EVFRDTLIEQAEQGVDYFTIHA--GVLLRYIP--LTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQY-D 374 (657)
Q Consensus 300 e~~~d~ieeQAeqGVDf~TIHa--Gv~~~~v~--~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~Y-D 374 (657)
++|.+..++-.+.|.|.+=||+ |-++..+- ...+|--.- |||+.-. -....+|++-.|+. +
T Consensus 141 ~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~y---GGslenR-----------~r~~~eiv~~ir~~vg 206 (343)
T cd04734 141 AAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEY---GGSLENR-----------MRFLLEVLAAVRAAVG 206 (343)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcC---CCCHHHH-----------hHHHHHHHHHHHHHcC
Q ss_pred eeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcC-Ce-EEeeCCCCCCC--------------CchHHHHHHHH
Q 006203 375 VALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKD-VQ-VMNEGPGHIPM--------------HKIPENMQKQL 438 (657)
Q Consensus 375 VtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~g-VQ-VMIEGPGHVPl--------------~~I~~Nv~lqk 438 (657)
..+++| +|-+...+-.+.-...|.+ +|+++.-++| |+ +-|-+..+... ..-.+-.+.-|
T Consensus 207 ~~~~v~--iRl~~~~~~~~G~~~~e~~---~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik 281 (343)
T cd04734 207 PDFIVG--IRISGDEDTEGGLSPDEAL---EIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIK 281 (343)
T ss_pred CCCeEE--EEeehhhccCCCCCHHHHH---HHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHH
Q ss_pred HhcCCCCccccCcccc
Q 006203 439 EWCNEAPFYTLGPLTT 454 (657)
Q Consensus 439 ~lC~~APfYvLGPLvT 454 (657)
+.+ +-|.++-|=+.|
T Consensus 282 ~~~-~ipvi~~G~i~~ 296 (343)
T cd04734 282 QAV-DLPVFHAGRIRD 296 (343)
T ss_pred HHc-CCCEEeeCCCCC
No 232
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=31.83 E-value=28 Score=37.09 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCeEE--eeCCCCC
Q 006203 403 QGELTRRAWDKDVQVM--NEGPGHI 425 (657)
Q Consensus 403 LGEL~krA~e~gVQVM--IEGPGHV 425 (657)
+-||++.|.++||+|+ |+-|||+
T Consensus 77 i~elv~yA~~rgI~vIPEiD~PGH~ 101 (329)
T cd06568 77 YKDIVAYAAERHITVVPEIDMPGHT 101 (329)
T ss_pred HHHHHHHHHHcCCEEEEecCCcHHH
No 233
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=31.71 E-value=57 Score=31.60 Aligned_cols=33 Identities=6% Similarity=0.050 Sum_probs=29.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHhcceEEEecCCCC
Q 006203 175 EMLYCATREKLDPEFVRAEVARGRAIIPSNKKH 207 (657)
Q Consensus 175 EMe~VA~~E~i~pE~vR~~VA~Gr~VIPaN~nh 207 (657)
-|..|++.-||+++.|.+-|..||+.|..+.|.
T Consensus 48 ti~eV~e~tgVs~~~I~~~IreGRL~~~~~~nl 80 (137)
T TIGR03826 48 TVSEIVEETGVSEKLILKFIREGRLQLKHFPNL 80 (137)
T ss_pred CHHHHHHHHCcCHHHHHHHHHcCCeeccCCCCC
Confidence 367899999999999999999999999987654
No 234
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=31.51 E-value=3.9e+02 Score=24.07 Aligned_cols=132 Identities=11% Similarity=0.020 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEec
Q 006203 300 EVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSI 379 (657)
Q Consensus 300 e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSL 379 (657)
+.+.+.++.-++.|+|++.+-. .... +... + ...+ ..+-++.+.+++.+-.
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~--~~~~-~~~~-~---~~~~----------------------~~~~~~~~~~~~~~~~ 62 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGT--RSSD-PEEA-E---TDDK----------------------EVLKEVAAETDLPLGV 62 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEee--EEEC-cccC-C---Cccc----------------------cHHHHHHhhcCCcEEE
Confidence 5677777777888999966542 1111 1111 1 1111 4566667777776655
Q ss_pred cCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCC-CchHHHHHHHHHhcCCCCccccCccccccCC
Q 006203 380 GDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPM-HKIPENMQKQLEWCNEAPFYTLGPLTTDIAP 458 (657)
Q Consensus 380 GDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl-~~I~~Nv~lqk~lC~~APfYvLGPLvTDIAp 458 (657)
..... |..|+.+ .+++++.+.|.+.+.=+.+|.+. ..+.+-++.-++.+.+.|+.+--...++
T Consensus 63 ~~~~~--------~~~~~~~-----~~a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~--- 126 (200)
T cd04722 63 QLAIN--------DAAAAVD-----IAAAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGE--- 126 (200)
T ss_pred EEccC--------Cchhhhh-----HHHHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCc---
Confidence 54321 1222222 12788899998877666666431 1233344444444433333222111111
Q ss_pred CchhHHHhHHHHHhhhcccceeeecC
Q 006203 459 GYDHITSAIGAANIGALGTALLCYVT 484 (657)
Q Consensus 459 GYDHITsAIGaA~aa~~GadfLCYVT 484 (657)
++.. + ...+|+|++++..
T Consensus 127 -~~~~---~----~~~~g~d~i~~~~ 144 (200)
T cd04722 127 -LAAA---A----AEEAGVDEVGLGN 144 (200)
T ss_pred -cchh---h----HHHcCCCEEEEcC
Confidence 1221 1 4567999998754
No 235
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=31.37 E-value=37 Score=35.22 Aligned_cols=185 Identities=19% Similarity=0.200 Sum_probs=85.5
Q ss_pred HHHHHHhCCCEeeecCCCCChHHHHHHHHhc-------CCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCC
Q 006203 243 VQWATMWGADTVMDLSTGRHIHETREWILRN-------SAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVD 315 (657)
Q Consensus 243 l~~A~~~GADtvMDLSTGgdi~~~R~~Il~n-------spvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGVD 315 (657)
.+.|.+.|||+|=-=.- ...+-+.++ ++-+-+..+.|+.+++. .|++|++.+..+.--+.|++
T Consensus 2 I~~A~~aGaDaVKFQ~~-----~~~~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~-----el~~e~~~~L~~~~~~~gi~ 71 (241)
T PF03102_consen 2 IDAAAEAGADAVKFQTF-----TAEELYSPNAYKAPYQSPNGWGDESYYELFKKL-----ELSEEQHKELFEYCKELGID 71 (241)
T ss_dssp HHHHHHHT-SEEEEEEB------HHHHCSGGGGG-------TT-SSTHHHHHHHH-----SS-HHHHHHHHHHHHHTT-E
T ss_pred HHHHHHhCCCEEEEEEE-----chhhhcChhhhcccccccCCCCCCcHHHHHHHh-----cCCHHHHHHHHHHHHHcCCE
Confidence 35788999999842111 111111121 12235677899988874 59999999999999999999
Q ss_pred EEEEeccccccccccc---cCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCC
Q 006203 316 YFTIHAGVLLRYIPLT---AKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDAN 392 (657)
Q Consensus 316 f~TIHaGv~~~~v~~~---~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~ 392 (657)
||+==... +.++.. .--..-|-| .-.++++ ||+-+.+.+.-+-|.=|+
T Consensus 72 f~stpfd~--~s~d~l~~~~~~~~KIaS-----------------~dl~n~~-lL~~~A~tgkPvIlSTG~--------- 122 (241)
T PF03102_consen 72 FFSTPFDE--ESVDFLEELGVPAYKIAS-----------------GDLTNLP-LLEYIAKTGKPVILSTGM--------- 122 (241)
T ss_dssp EEEEE-SH--HHHHHHHHHT-SEEEE-G-----------------GGTT-HH-HHHHHHTT-S-EEEE-TT---------
T ss_pred EEECCCCH--HHHHHHHHcCCCEEEecc-----------------ccccCHH-HHHHHHHhCCcEEEECCC---------
Confidence 99754432 222211 001111111 1233554 666666666544444343
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCeEEee-CCCCCCCCchHHHHHHHHHhcCCCCccccCccccccCCCc-hhHHHhHHHH
Q 006203 393 DTAQFAELLTQGELTRRAWDKDVQVMNE-GPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGY-DHITSAIGAA 470 (657)
Q Consensus 393 D~AQ~~EL~~LGEL~krA~e~gVQVMIE-GPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGY-DHITsAIGaA 470 (657)
+-+.|+..--+..+++ .+.|+.+- ..--.|-.-=..|+.....|=.--| +.-|| ||-.+..-..
T Consensus 123 --stl~EI~~Av~~~~~~--~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~----------~~vG~SDHt~g~~~~~ 188 (241)
T PF03102_consen 123 --STLEEIERAVEVLREA--GNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG----------VPVGYSDHTDGIEAPI 188 (241)
T ss_dssp ----HHHHHHHHHHHHHH--CT--EEEEEE-SSSS--GGG--TTHHHHHHHHST----------SEEEEEE-SSSSHHHH
T ss_pred --CCHHHHHHHHHHHHhc--CCCCEEEEecCCCCCCChHHcChHHHHHHHHhcC----------CCEEeCCCCCCcHHHH
Confidence 3455655555555444 44455443 3444444333344433333222111 11255 6766554455
Q ss_pred Hhhhccccee
Q 006203 471 NIGALGTALL 480 (657)
Q Consensus 471 ~aa~~GadfL 480 (657)
+|.+.||.++
T Consensus 189 ~AvalGA~vI 198 (241)
T PF03102_consen 189 AAVALGARVI 198 (241)
T ss_dssp HHHHTT-SEE
T ss_pred HHHHcCCeEE
Confidence 6668898876
No 236
>PRK13317 pantothenate kinase; Provisional
Probab=30.95 E-value=2.5e+02 Score=29.63 Aligned_cols=128 Identities=16% Similarity=0.223 Sum_probs=64.5
Q ss_pred ccCcccCccccccHHHHHHHHHc-CCcCchhhhHHHHHHHHhHhc---eeEeccCCCCC--CCccCCCcHHHHHHHH---
Q 006203 331 TAKRMTGIVSRGGSIHAKWCLAY-HKENFAYEHWDEILDICNQYD---VALSIGDGLRP--GSIYDANDTAQFAELL--- 401 (657)
Q Consensus 331 ~~~RvtgIVSRGGSi~a~Wml~h-~~ENplY~~FD~ileI~k~YD---VtlSLGDGLRP--G~i~DA~D~AQ~~EL~--- 401 (657)
...|+.|.===|| .+.+-+..= +. ..||+|++++++.| +-|.++|=-.- .-+.-++=.+-|+|++
T Consensus 116 ~~~r~~Gt~iGGg-t~~gL~~lL~~~-----~~~~el~~la~~g~~~~~Dl~v~dIy~~~~~~l~i~s~csvFakv~~l~ 189 (277)
T PRK13317 116 SQRRVGGTGIGGG-TIQGLSKLLTNI-----SDYEQLIELAKHGDRNNIDLKVGDIYKGPLPPIPGDLTASNFGKVLHHL 189 (277)
T ss_pred ceEEEccccccHH-HHHHHHHHHhCC-----CCHHHHHHHHhcCCCccccceeccccCCCCCCCCCceeEehhhhhhhhh
Confidence 4578888744444 444433221 21 67999999999986 44555542210 0011122223344432
Q ss_pred -------------------HHHHHHHH-HHhcCCeEEeeCCCCCCCCc-hHHHHHHHHHhcCCCCccccCccccccCCCc
Q 006203 402 -------------------TQGELTRR-AWDKDVQVMNEGPGHIPMHK-IPENMQKQLEWCNEAPFYTLGPLTTDIAPGY 460 (657)
Q Consensus 402 -------------------~LGEL~kr-A~e~gVQVMIEGPGHVPl~~-I~~Nv~lqk~lC~~APfYvLGPLvTDIApGY 460 (657)
+++.|+.. |+..+++-.+=.-|.+.-|. +.+-+....++.+ ..++ -|-+
T Consensus 190 ~~g~~~eDIaasl~~~v~~~I~~lA~~~ar~~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~-~~~~---------~p~~ 259 (277)
T PRK13317 190 DSEFTSSDILAGVIGLVGEVITTLSIQAAREKNIENIVYIGSTLTNNPLLQEIIESYTKLRN-CTPI---------FLEN 259 (277)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECcccccCHHHHHHHHHHHhcCC-ceEE---------ecCC
Confidence 24444433 44455554433323444433 2322333333322 2222 2667
Q ss_pred hhHHHhHHHHHhhh
Q 006203 461 DHITSAIGAANIGA 474 (657)
Q Consensus 461 DHITsAIGaA~aa~ 474 (657)
.+..+|||||+.++
T Consensus 260 ~~~~gAlGAaL~a~ 273 (277)
T PRK13317 260 GGYSGAIGALLLAT 273 (277)
T ss_pred CchhHHHHHHHHhh
Confidence 78999999998865
No 237
>PRK13308 ureC urease subunit alpha; Reviewed
Probab=30.80 E-value=2e+02 Score=33.81 Aligned_cols=120 Identities=24% Similarity=0.311 Sum_probs=77.7
Q ss_pred HHHHHhCCCEeeecCCCC----------ChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcC
Q 006203 244 QWATMWGADTVMDLSTGR----------HIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQG 313 (657)
Q Consensus 244 ~~A~~~GADtvMDLSTGg----------di~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqG 313 (657)
+.|+.-|.-||++.-|+. +|+.+.+. .+..++.+|-. .+ |... -.+.|++|.+.|
T Consensus 149 ~aALagGVTTVi~gg~gPt~p~~t~g~~~i~~~l~a-a~~~pvN~g~~------gk--G~~s------~~aeL~eli~aG 213 (569)
T PRK13308 149 DHALASGITTMLGGGLGPTVGIDSGGPFNTGRMLQA-AEAWPVNFGFL------GR--GNSS------KPAALIEQVEAG 213 (569)
T ss_pred HHHHcCCCcEEecCCcCCCCCCCCCCHHHHHHHHHH-HhcCCccEEEE------cC--Cccc------CHHHHHHHHHCC
Confidence 789999999999964443 24444432 33455555521 01 2111 135789999999
Q ss_pred CCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCc
Q 006203 314 VDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDAND 393 (657)
Q Consensus 314 VDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D 393 (657)
+..|.+|-.- | -+| ..++++|+++++||+.+.+ -.|..+
T Consensus 214 A~GfKi~ed~-------------------g------------~t~--~~i~~aL~~A~~~dv~Vai--------Hadtln 252 (569)
T PRK13308 214 ACGLKIHEDW-------------------G------------AMP--AAIDTCLEVADEYDFQVQL--------HTDTLN 252 (569)
T ss_pred CCEEeecCCC-------------------C------------CCH--HHHHHHHHHHHhcCCEEEE--------eCCCcC
Confidence 9999998210 1 023 5899999999999999874 456667
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEE---eeC--CCCCC
Q 006203 394 TAQFAELLTQGELTRRAWDKDVQVM---NEG--PGHIP 426 (657)
Q Consensus 394 ~AQ~~EL~~LGEL~krA~e~gVQVM---IEG--PGHVP 426 (657)
++-|.|. ++.... |..+- +|| -||+|
T Consensus 253 e~g~~E~-t~~a~~------gr~iH~~H~egaggghap 283 (569)
T PRK13308 253 ESGFVED-TLAAIG------GRTIHMYHTEGAGGGHAP 283 (569)
T ss_pred cchHHHH-HHHHhc------CCeEEEEeccCCccCchh
Confidence 7777777 554443 44443 566 47988
No 238
>TIGR01224 hutI imidazolonepropionase. This enzyme catalyzes the third step in histidine degradation.
Probab=30.49 E-value=3.2e+02 Score=28.58 Aligned_cols=107 Identities=23% Similarity=0.191 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccc--cccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhH
Q 006203 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLL--RYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQ 372 (657)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~--~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~ 372 (657)
..++.+.|.++++.-.+-|+.+ ++||+-.. ..++... + .|.++- -+.-|+ =|+.++.+++
T Consensus 192 ~~~~~~~~~~~~~~A~~~g~~v-~~H~~e~~~~~~~~~~~-~-~g~~~~---~H~~~~------------~~~~l~~la~ 253 (377)
T TIGR01224 192 GVFSVEQSRRILQAAQEAGLPV-KLHAEELSNLGGAELAA-K-LGAVSA---DHLEHA------------SDAGIKALAE 253 (377)
T ss_pred CCcCHHHHHHHHHHHHHCCCCE-EEEecCCCCCCHHHHHH-H-cCCCcc---HHHhcC------------CHHHHHHHHh
Confidence 3566788888888888889865 89996321 2222111 1 122210 022221 1578999999
Q ss_pred hceeEeccCC--CCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeC---CCCCCCCchHHHH
Q 006203 373 YDVALSIGDG--LRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEG---PGHIPMHKIPENM 434 (657)
Q Consensus 373 YDVtlSLGDG--LRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEG---PGHVPl~~I~~Nv 434 (657)
+++.+++==. +.-| +.. .=+++.+++||.|.+=- ||.-|...+...+
T Consensus 254 ~g~~~~~~P~~~~~l~---~~~------------~p~~~l~~~Gv~v~lgTD~~~~~~~~~~~~~~~ 305 (377)
T TIGR01224 254 AGTVAVLLPGTTFYLR---ETY------------PPARQLIDYGVPVALATDLNPGSSPTLSMQLIM 305 (377)
T ss_pred cCCEEEECchHHHhcC---CcC------------ccHHHHHHCCCCEEEECCCCCCCChhHHHHHHH
Confidence 9999874211 0000 000 01456678999988743 4444443333333
No 239
>TIGR01048 lysA diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis.
Probab=30.45 E-value=7.2e+02 Score=26.80 Aligned_cols=28 Identities=11% Similarity=0.194 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEeccc
Q 006203 296 NLSWEVFRDTLIEQAE-QGVDYFTIHAGV 323 (657)
Q Consensus 296 ~lt~e~~~d~ieeQAe-qGVDf~TIHaGv 323 (657)
-++.+++.+.++.-.+ .|+.+..||+-+
T Consensus 170 Gi~~~~~~~~~~~~~~~~~l~l~Glh~H~ 198 (417)
T TIGR01048 170 GIDVEEALEAYLYALQLPHLELVGIHCHI 198 (417)
T ss_pred CCCHHHHHHHHHHHHhCCCCCEEEEEEeC
Confidence 3566776666554333 468888887733
No 240
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=30.33 E-value=89 Score=30.00 Aligned_cols=55 Identities=24% Similarity=0.365 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhcee
Q 006203 297 LSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVA 376 (657)
Q Consensus 297 lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVt 376 (657)
+..+.+++.|++-.+.||+++-+-.. +-.++=+++...+|.++|++|++.
T Consensus 9 ~~~~~~~~~l~~~~~~gv~~v~lR~k------------------------------~~~~~~~~~~a~~l~~~~~~~~~~ 58 (180)
T PF02581_consen 9 LCGDDFLEQLEAALAAGVDLVQLREK------------------------------DLSDEELLELARRLAELCQKYGVP 58 (180)
T ss_dssp TSTCHHHHHHHHHHHTT-SEEEEE-S------------------------------SS-HHHHHHHHHHHHHHHHHTTGC
T ss_pred hhcchHHHHHHHHHHCCCcEEEEcCC------------------------------CCCccHHHHHHHHHHHHhhcceEE
Confidence 44678999999999999999866442 223345678889999999999999
Q ss_pred EeccC
Q 006203 377 LSIGD 381 (657)
Q Consensus 377 lSLGD 381 (657)
|-+-|
T Consensus 59 liin~ 63 (180)
T PF02581_consen 59 LIIND 63 (180)
T ss_dssp EEEES
T ss_pred EEecC
Confidence 99877
No 241
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=30.14 E-value=6.7e+02 Score=26.38 Aligned_cols=147 Identities=17% Similarity=0.230 Sum_probs=73.9
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhH-hce
Q 006203 297 LSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQ-YDV 375 (657)
Q Consensus 297 lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~-YDV 375 (657)
-+.++|.+..+.-.+.|+|.+-||+|- | .++++. .-|||.+.. || +...+|++-.++ -++
T Consensus 72 ~~~~~~~~aa~~~~~~G~d~IelN~gc-----P--~~~~~~--~~~Gs~l~~--------~~--~~~~ei~~~vr~~~~~ 132 (319)
T TIGR00737 72 SDPDTMAEAAKINEELGADIIDINMGC-----P--VPKITK--KGAGSALLR--------DP--DLIGKIVKAVVDAVDI 132 (319)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCC-----C--HHHhcC--CCccchHhC--------CH--HHHHHHHHHHHhhcCC
Confidence 367899999887777899999999994 2 122221 346775432 22 222334443333 233
Q ss_pred eEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe-eC----CCCCCCCchHHHHHHHHHhcCCCCccccC
Q 006203 376 ALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN-EG----PGHIPMHKIPENMQKQLEWCNEAPFYTLG 450 (657)
Q Consensus 376 tlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMI-EG----PGHVPl~~I~~Nv~lqk~lC~~APfYvLG 450 (657)
.+|+ -+|.|- |-++ .++-++++++.+.||...+ -| .|+-+-.. -+-++.-++.++ -|+..-|
T Consensus 133 pv~v--Kir~g~--~~~~-------~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~-~~~i~~i~~~~~-ipvi~nG 199 (319)
T TIGR00737 133 PVTV--KIRIGW--DDAH-------INAVEAARIAEDAGAQAVTLHGRTRAQGYSGEAN-WDIIARVKQAVR-IPVIGNG 199 (319)
T ss_pred CEEE--EEEccc--CCCc-------chHHHHHHHHHHhCCCEEEEEcccccccCCCchh-HHHHHHHHHcCC-CcEEEeC
Confidence 3332 245553 1111 1245788888888886552 22 12211011 122333344343 6777777
Q ss_pred ccccccCCCchhHHHhH--HHHHhhhccccee
Q 006203 451 PLTTDIAPGYDHITSAI--GAANIGALGTALL 480 (657)
Q Consensus 451 PLvTDIApGYDHITsAI--GaA~aa~~GadfL 480 (657)
=+.| ++++-.++ ++|-+.+.|-.+|
T Consensus 200 gI~~-----~~da~~~l~~~gad~VmigR~~l 226 (319)
T TIGR00737 200 DIFS-----PEDAKAMLETTGCDGVMIGRGAL 226 (319)
T ss_pred CCCC-----HHHHHHHHHhhCCCEEEEChhhh
Confidence 5433 24555555 4444444443333
No 242
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=30.03 E-value=1.5e+02 Score=29.49 Aligned_cols=67 Identities=27% Similarity=0.319 Sum_probs=46.8
Q ss_pred CCCEe---eecCCCC---ChHHHHHHHHhcCCCccccchhhhHHHHh--cCccCCCCHHHHHHHHHHHHhcCCCEEEEec
Q 006203 250 GADTV---MDLSTGR---HIHETREWILRNSAVPVGTVPIYQALEKV--DGIAENLSWEVFRDTLIEQAEQGVDYFTIHA 321 (657)
Q Consensus 250 GADtv---MDLSTGg---di~~~R~~Il~nspvPVGTVPIYqA~~k~--~g~~~~lt~e~~~d~ieeQAeqGVDf~TIHa 321 (657)
|||.| +|+.... ++.+.-+.|.+.++ +||-=.+... ||. -..+.+..++.++.-++.|+||+.|=-
T Consensus 24 ~aD~vElR~D~~~~~~~~~~~~~~~~lr~~~~-----~piI~T~R~~~eGG~-~~~~~~~~~~ll~~~~~~~~d~vDiEl 97 (225)
T cd00502 24 GADAVELRVDLLEDPSIDDVAEQLSLLRELTP-----LPIIFTVRTKSEGGN-FEGSEEEYLELLEEALKLGPDYVDIEL 97 (225)
T ss_pred CCCEEEEEEeeccccchHHHHHHHHHHHHhCC-----CCEEEEEcccccCCC-cCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 99987 7887765 34444555555554 4554444322 444 478899999999999999999999864
Q ss_pred c
Q 006203 322 G 322 (657)
Q Consensus 322 G 322 (657)
-
T Consensus 98 ~ 98 (225)
T cd00502 98 D 98 (225)
T ss_pred c
Confidence 3
No 243
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=29.67 E-value=2.3e+02 Score=26.23 Aligned_cols=64 Identities=19% Similarity=0.207 Sum_probs=43.5
Q ss_pred HhcCCeEEeeCCCC--CCCCchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhh-hcccceeeec
Q 006203 411 WDKDVQVMNEGPGH--IPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIG-ALGTALLCYV 483 (657)
Q Consensus 411 ~e~gVQVMIEGPGH--VPl~~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGYDHITsAIGaA~aa-~~GadfLCYV 483 (657)
.+++ =|.|||||+ .|+...-.|.++-+.++ +|.. ||++..++. |..++.+...- ..|.+.++.|
T Consensus 98 ~~~D-~viid~~g~~~~~~~~~~~~~dl~~~~~--~~vi----lV~~~~~~~--~~~~~~~~~~l~~~~~~i~gvv 164 (166)
T TIGR00347 98 QKYD-FVLVEGAGGLCVPITEEYTTADLIKLLQ--LPVI----LVVRVKLGT--INHTLLTVEHARQTGLTLAGVI 164 (166)
T ss_pred hcCC-EEEEEcCCccccCCCCCCcHHHHHHHhC--CCEE----EEECCCCcH--HHHHHHHHHHHHHCCCCeEEEE
Confidence 4444 478999986 78877667888888874 4543 556665554 77777666443 4488887765
No 244
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=29.67 E-value=55 Score=37.08 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=28.5
Q ss_pred EEeeCCCC-CCCCchHHHHHHHHHhcCCCCccc
Q 006203 417 VMNEGPGH-IPMHKIPENMQKQLEWCNEAPFYT 448 (657)
Q Consensus 417 VMIEGPGH-VPl~~I~~Nv~lqk~lC~~APfYv 448 (657)
+.|.|.|| ||.++=+.-.++-+++-.+.|++.
T Consensus 420 ~tVrGaGH~VP~~~p~~al~m~~~fl~g~~l~~ 452 (454)
T KOG1282|consen 420 ATVRGAGHMVPYDKPESALIMFQRFLNGQPLPS 452 (454)
T ss_pred EEEeCCcccCCCCCcHHHHHHHHHHHcCCCCCC
Confidence 99999999 999999988899899888888753
No 245
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=29.62 E-value=62 Score=33.18 Aligned_cols=176 Identities=15% Similarity=0.159 Sum_probs=104.2
Q ss_pred ccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcC
Q 006203 335 MTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKD 414 (657)
Q Consensus 335 vtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~g 414 (657)
+.+|..|--.-...|....+. +.|+.||++++ ..-|+.+ -++-.. ...|++..|-++|
T Consensus 4 LvaV~D~~~e~a~~~a~~~g~--~~~~d~~eLl~--~~vDaVv------------iatp~~------~H~e~a~~aL~aG 61 (229)
T TIGR03855 4 IAAVYDRNPKDAKELAERCGA--KIVSDFDEFLP--EDVDIVV------------EAASQE------AVKEYAEKILKNG 61 (229)
T ss_pred EEEEECCCHHHHHHHHHHhCC--ceECCHHHHhc--CCCCEEE------------ECCChH------HHHHHHHHHHHCC
Confidence 334444443333344444432 57888888875 4456544 222222 2367788899999
Q ss_pred CeEEeeCCCCCC-CCchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhh-cccceeeecCch--hhcC
Q 006203 415 VQVMNEGPGHIP-MHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGA-LGTALLCYVTPK--EHLG 490 (657)
Q Consensus 415 VQVMIEGPGHVP-l~~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGYDHITsAIGaA~aa~-~GadfLCYVTPa--EHLg 490 (657)
.-|+++-||-.- ....++=++.-++ ++.++|+- +|+=..--+| -+|. -+-+.+.|.|-+ .-|+
T Consensus 62 khVl~~s~gAlad~e~~~~l~~aA~~--~g~~l~i~--------sGai~g~d~l---~a~~ig~~~~V~i~~~k~p~~~~ 128 (229)
T TIGR03855 62 KDLLIMSVGALADRELRERLREVARS--SGRKVYIP--------SGAIGGLDAL---KAASLGRIERVVLTTTKPPASLG 128 (229)
T ss_pred CCEEEECCcccCCHHHHHHHHHHHHh--cCCEEEEC--------hHHHHHHHHH---HhcccCCceEEEEEEecChHHhc
Confidence 999999888653 3444444444444 67888864 4654433333 2233 344677776643 2233
Q ss_pred --CCChhHHHHHHHHHHHHHhHhhhhcCCcchhhHHHHHHHHHhhcChHHHHhhcCChHHHHhhhhcc
Q 006203 491 --LPNRDDVKAGVIAYKIAAHAADLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDET 556 (657)
Q Consensus 491 --LP~~eDVkeGViA~kIAAHaaDlaKg~p~A~~rD~~mSkAR~~~dWe~Qf~LalDPe~Ar~~~~e~ 556 (657)
+..+.-+.+| -|.+.++..|.-.+==-++|-|= -|| -+.+|--||...+..|+=.
T Consensus 129 ~~~~~~~~~f~G--------~a~ea~~~fP~n~Nva~a~alA~-g~d--~~v~i~adp~~~~n~h~i~ 185 (229)
T TIGR03855 129 RDIKEPTTIFEG--------SASEAIKLFPANINVAATLSLAA-GFD--AKVEIVADPEADRNIHEIF 185 (229)
T ss_pred CCCCCCEEEEEe--------cHHHHHHHCCchHHHHHHHHHhc-CCC--cEEEEEEcCCCCCcEEEEE
Confidence 2223334444 35566677887766666777775 667 8888999999888777654
No 246
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=29.57 E-value=86 Score=35.76 Aligned_cols=63 Identities=27% Similarity=0.281 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhCCCEe-eecCCCCC------hHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHH
Q 006203 238 EEVYKVQWATMWGADTV-MDLSTGRH------IHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQA 310 (657)
Q Consensus 238 ~EveKl~~A~~~GADtv-MDLSTGgd------i~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQA 310 (657)
+-++.++..+++|+|.| +|.+-|-+ |.++|+..=...+|-.|||=-++.+ .+. .
T Consensus 242 ~~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a---------------~~l----i 302 (502)
T PRK07107 242 DYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGF---------------RYL----A 302 (502)
T ss_pred hHHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHH---------------HHH----H
Confidence 34677888889999998 78444432 4444442211123334555444443 333 3
Q ss_pred hcCCCEEEE
Q 006203 311 EQGVDYFTI 319 (657)
Q Consensus 311 eqGVDf~TI 319 (657)
+.|+|++.|
T Consensus 303 ~aGAd~I~v 311 (502)
T PRK07107 303 EAGADFVKV 311 (502)
T ss_pred HcCCCEEEE
Confidence 579999866
No 247
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=29.56 E-value=1.4e+02 Score=28.86 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEec
Q 006203 300 EVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSI 379 (657)
Q Consensus 300 e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSL 379 (657)
+.+.+.|++-+++|+|++.+=-..+..+......+. + ...+.+.-..++.|.+++++|++.+-+
T Consensus 18 ~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~----~------------~~~~~~~~~~~~~l~~~a~~~~i~ii~ 81 (253)
T cd07197 18 AKALRLIKEAAEQGADLIVLPELFLTGYSFESAKED----L------------DLAEELDGPTLEALAELAKELGIYIVA 81 (253)
T ss_pred HHHHHHHHHHHHCCCCEEEcCCccccCCccccchhh----h------------hhcccCCchHHHHHHHHHHHhCeEEEe
Confidence 556677777788999998543221111100000000 0 112233446789999999999999998
Q ss_pred cCC
Q 006203 380 GDG 382 (657)
Q Consensus 380 GDG 382 (657)
|=-
T Consensus 82 G~~ 84 (253)
T cd07197 82 GIA 84 (253)
T ss_pred eeE
Confidence 844
No 248
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=29.51 E-value=2e+02 Score=33.81 Aligned_cols=165 Identities=22% Similarity=0.271 Sum_probs=94.6
Q ss_pred hhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcH-HHHHH-HHHHHH-------H------------HHHHHhcCCeE
Q 006203 359 AYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDT-AQFAE-LLTQGE-------L------------TRRAWDKDVQV 417 (657)
Q Consensus 359 lY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~-AQ~~E-L~~LGE-------L------------~krA~e~gVQV 417 (657)
|+-.=+.|-++++++++.+ ++++ .|-|+.+. .++.+ +..|-. - +.--.+-.++.
T Consensus 407 LvG~~~~I~~~~~~~~~~l--~~~~---~Ii~~~~~~~~~~~~~~~lr~~kg~s~~~a~~~~~~~~~~a~~mv~~G~aD~ 481 (684)
T PRK05632 407 LLGNPEEIRRVAAAQGVDL--PAGI---EIIDPSEVRERYVAPLVELRKHKGMTEEVAREQLEDNVYFGTMMLALGEVDG 481 (684)
T ss_pred EECCHHHHHHHHHHcCCCc--cCCc---EEECCchhHHHHHHHHHHHHhcCCCCHHHHHHHhhcchHHHHHHHHCCCCCE
Confidence 4456678889999998543 4444 57777331 23322 111110 0 11233558999
Q ss_pred EeeCCCCCCCCchHHHHHHHHHhcC-CCC----ccccCc---cccccC----CCchhHH--HhHHHHHhhhcc----cce
Q 006203 418 MNEGPGHIPMHKIPENMQKQLEWCN-EAP----FYTLGP---LTTDIA----PGYDHIT--SAIGAANIGALG----TAL 479 (657)
Q Consensus 418 MIEGPGHVPl~~I~~Nv~lqk~lC~-~AP----fYvLGP---LvTDIA----pGYDHIT--sAIGaA~aa~~G----adf 479 (657)
||-|-+|---+.++.-.++.+.+-. .-| |+.+.. +.+|.| |--+|.. +-.++..+-.+| .+|
T Consensus 482 lvsG~~~Tt~~~l~~~l~~i~~~~g~~~~s~~~~~~~p~~~~~~~D~gvn~~P~~e~l~~ia~~aa~~a~~~GiePkVAl 561 (684)
T PRK05632 482 LVSGAVHTTANTIRPALQLIKTAPGSSLVSSVFFMLLPDQVLVYGDCAVNPDPTAEQLAEIAIQSADSAAAFGIEPRVAM 561 (684)
T ss_pred EecCCCCChHHHHHHHHHHhccCCCCceEEEEEEEEcCCceEEEecCeeeCCCCHHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 9999988755566655555444321 112 222211 345554 4555543 233455555678 579
Q ss_pred eeecCchhhcCCCChhHHHHHHHHHHHHHhHhhhhcC-CcchhhHHHHHHHHHhhcChHHHHhhcCChHHHHh
Q 006203 480 LCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKG-HPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMS 551 (657)
Q Consensus 480 LCYVTPaEHLgLP~~eDVkeGViA~kIAAHaaDlaKg-~p~A~~rD~~mSkAR~~~dWe~Qf~LalDPe~Ar~ 551 (657)
|+|=|=-++-| ++.|-|++ |++ |+|. +|. ..+|=+=||..|+||+.|+.
T Consensus 562 Ls~st~~s~kg-~~~~~v~e---A~~-------l~~~~~~~------------~~vdGp~q~D~A~~~~~~~~ 611 (684)
T PRK05632 562 LSYSTGTSGSG-ADVEKVRE---ATR-------LARERRPD------------LLIDGPLQYDAAVDPSVARS 611 (684)
T ss_pred EecCCCCCCCC-chhhHHHH---HHH-------HHHhhCCC------------CEEEecchHHHhcCHHHHHh
Confidence 99988777766 77788886 333 3331 111 34466678999999998873
No 249
>PRK06267 hypothetical protein; Provisional
Probab=29.39 E-value=7.5e+02 Score=26.70 Aligned_cols=33 Identities=12% Similarity=-0.024 Sum_probs=28.1
Q ss_pred CchhhcCCCChhHHHHHHHHHHHHHhHhhhhcC
Q 006203 484 TPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKG 516 (657)
Q Consensus 484 TPaEHLgLP~~eDVkeGViA~kIAAHaaDlaKg 516 (657)
||.++...|+.+++..=+-++||.-.-+.|..|
T Consensus 210 Tp~~~~~~~s~~e~lr~ia~~Rl~lP~~~I~~~ 242 (350)
T PRK06267 210 TIFENKPSVTTLEYMNWVSSVRLNFPKIKIITG 242 (350)
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHCCCCCcchh
Confidence 777888889999999999999999877777555
No 250
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=29.37 E-value=2.1e+02 Score=29.55 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEecccc
Q 006203 298 SWEVFRDTLIEQAEQGVDYFTIHAGVL 324 (657)
Q Consensus 298 t~e~~~d~ieeQAeqGVDf~TIHaGv~ 324 (657)
+.+++.+....-.+.|||++++|.++.
T Consensus 167 ~~~~~~~~a~~l~~~G~d~i~v~nt~~ 193 (300)
T TIGR01037 167 NVTDITEIAKAAEEAGADGLTLINTLR 193 (300)
T ss_pred ChhhHHHHHHHHHHcCCCEEEEEccCC
Confidence 345666666665678999999998764
No 251
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=29.20 E-value=3.8e+02 Score=26.90 Aligned_cols=152 Identities=18% Similarity=0.139 Sum_probs=81.1
Q ss_pred CCChHHHHHHHHHHHHhCCCEe---eecCCCCChHHHHHHHHhcCCCccccchhhhHHHH-hcCccCCCCHHHHHHHHHH
Q 006203 233 ASSIEEEVYKVQWATMWGADTV---MDLSTGRHIHETREWILRNSAVPVGTVPIYQALEK-VDGIAENLSWEVFRDTLIE 308 (657)
Q Consensus 233 ~~~ie~EveKl~~A~~~GADtv---MDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k-~~g~~~~lt~e~~~d~iee 308 (657)
..+.++-..+++.+ ..|||.| +|+....+..+.-..+++....-.+.+||-=.+.. ..|.--..+.+..++.+.+
T Consensus 8 ~~~~~~~~~~~~~~-~~~aD~vElRlD~l~~~~~~~~~~~~~~~~~~~~~~~piI~T~R~~~eGG~~~~~~~~~~~ll~~ 86 (228)
T TIGR01093 8 APDLEEALATAEKI-CKGADIVELRVDLLKDPSSNNDVDALIEQLSQLRPDKPLIFTIRTISEGGKFPGNEEEYLEELKR 86 (228)
T ss_pred CCCHHHHHHHHHHh-ccCCCEEEEEechhcccCcHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCHHHHHHHHHH
Confidence 34566666666666 7899997 67664433333223333321111135675444332 2233357888999998877
Q ss_pred H-HhcCCCEEEEecccccccccc-----ccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCC
Q 006203 309 Q-AEQGVDYFTIHAGVLLRYIPL-----TAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDG 382 (657)
Q Consensus 309 Q-AeqGVDf~TIHaGv~~~~v~~-----~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSLGDG 382 (657)
- ...|+||+.|=.-...+.+.. ..++.-=|+|. |+-...|-.+..-++++-+++++ +|-
T Consensus 87 ~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~----------H~f~~tp~~~~l~~~~~~~~~~g-----aDi 151 (228)
T TIGR01093 87 AADSPGPDFVDIELFLPDDAVKELINIAKKGGTKIIMSY----------HDFQKTPSWEEIVERLEKALSYG-----ADI 151 (228)
T ss_pred HHHhCCCCEEEEEccCCHHHHHHHHHHHHHCCCEEEEec----------cCCCCCCCHHHHHHHHHHHHHhC-----CCE
Confidence 6 367899999865433232221 12222223331 33356677766666777666653 344
Q ss_pred CCCCCccCCCcHHHHHHHHH
Q 006203 383 LRPGSIYDANDTAQFAELLT 402 (657)
Q Consensus 383 LRPG~i~DA~D~AQ~~EL~~ 402 (657)
.|= ..-+++.....+|..
T Consensus 152 vKi--a~~a~~~~D~~~ll~ 169 (228)
T TIGR01093 152 VKI--AVMANSKEDVLTLLE 169 (228)
T ss_pred EEE--EeccCCHHHHHHHHH
Confidence 442 223455555555553
No 252
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=29.16 E-value=35 Score=35.65 Aligned_cols=27 Identities=26% Similarity=0.206 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecc
Q 006203 296 NLSWEVFRDTLIEQAEQGVDYFTIHAG 322 (657)
Q Consensus 296 ~lt~e~~~d~ieeQAeqGVDf~TIHaG 322 (657)
-++.+.+.+.|..-|.-+...+-+|-.
T Consensus 12 ~~~~~~lk~~id~ma~~K~N~lhlHl~ 38 (303)
T cd02742 12 FLSVESIKRTIDVLARYKINTFHWHLT 38 (303)
T ss_pred CcCHHHHHHHHHHHHHhCCcEEEEeee
Confidence 467899999999999999999999964
No 253
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=29.15 E-value=49 Score=35.06 Aligned_cols=105 Identities=20% Similarity=0.268 Sum_probs=55.2
Q ss_pred HHHHHHHHHHH----------HHHHHHHhcCCeEEe-eC---CCCCCCCchHHHHHHHHHhcC--CCCccccCccccccC
Q 006203 394 TAQFAELLTQG----------ELTRRAWDKDVQVMN-EG---PGHIPMHKIPENMQKQLEWCN--EAPFYTLGPLTTDIA 457 (657)
Q Consensus 394 ~AQ~~EL~~LG----------EL~krA~e~gVQVMI-EG---PGHVPl~~I~~Nv~lqk~lC~--~APfYvLGPLvTDIA 457 (657)
...+++|...| +.+++|.+.||-+.| +| -||.- .++...+.|-.++++ .-|...-|=+ +
T Consensus 126 ~~~i~~l~~~gi~v~~~v~s~~~A~~a~~~G~D~iv~qG~eAGGH~g-~~~~~~~~L~~~v~~~~~iPViaAGGI----~ 200 (330)
T PF03060_consen 126 PEVIERLHAAGIKVIPQVTSVREARKAAKAGADAIVAQGPEAGGHRG-FEVGSTFSLLPQVRDAVDIPVIAAGGI----A 200 (330)
T ss_dssp HHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEE-TTSSEE----SSG-HHHHHHHHHHH-SS-EEEESS------
T ss_pred HHHHHHHHHcCCccccccCCHHHHHHhhhcCCCEEEEeccccCCCCC-ccccceeeHHHHHhhhcCCcEEEecCc----C
Confidence 44667776655 678889999997655 55 59988 333344544444433 2555555543 2
Q ss_pred CCchhHHHhH-HHHHhhhcccceeeecCchhhcCCCChhHHHHHHHHHHHHHhHhhhh
Q 006203 458 PGYDHITSAI-GAANIGALGTALLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLA 514 (657)
Q Consensus 458 pGYDHITsAI-GaA~aa~~GadfLCYVTPaEHLgLP~~eDVkeGViA~kIAAHaaDla 514 (657)
-| ..|.+|+ =||-+.+.|+.|||- .| =+..+..|+-++.+ ...|+.
T Consensus 201 dg-~~iaaal~lGA~gV~~GTrFl~t---~E---s~~~~~~K~~l~~a----~~~dtv 247 (330)
T PF03060_consen 201 DG-RGIAAALALGADGVQMGTRFLAT---EE---SGASDAYKQALVDA----TEEDTV 247 (330)
T ss_dssp SH-HHHHHHHHCT-SEEEESHHHHTS---TT---S-S-HHHHHHHHHG----GTT-EE
T ss_pred CH-HHHHHHHHcCCCEeecCCeEEec---cc---ccChHHHHHHHHhC----CCCCEE
Confidence 23 2355555 246667778888754 22 35557788887764 455664
No 254
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=29.07 E-value=4.3e+02 Score=27.03 Aligned_cols=94 Identities=22% Similarity=0.250 Sum_probs=62.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhc
Q 006203 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYD 374 (657)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YD 374 (657)
.+.+.+++...+..-.+.+==.+.-|.|..+.. --.-++.....+++++.|++++
T Consensus 106 ~~~~~~~~~~~~~~a~~~~~v~il~H~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~g 160 (237)
T COG1387 106 EDQDEEDYTERLIAAMSNGAVDILAHPGGRLLG-------------------------RIDRGAYKEDIEELIELAEKNG 160 (237)
T ss_pred cccCHHHHHHHHHHHHcCCCccEEecCCccccc-------------------------cccccccHHHHHHHHHHHHHhC
Confidence 677888888888888877655566787754333 1112456667777777777777
Q ss_pred eeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCC
Q 006203 375 VALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPM 427 (657)
Q Consensus 375 VtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl 427 (657)
+.|-+--- | ..+....++++.|+|.|+.+-|=.=+|.|-
T Consensus 161 ~aleins~--~------------~~~~~~~~~~~~~~e~G~~~~i~tDaH~~~ 199 (237)
T COG1387 161 KALEINSR--P------------GRLDPNSEILRLARELGVKLAIGTDAHRPG 199 (237)
T ss_pred cEEeecCC--c------------CccCchHHHHHHHHHhCCeEEeecCcCChh
Confidence 77766422 2 233445667777777777777777777773
No 255
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=28.70 E-value=1.3e+02 Score=28.48 Aligned_cols=60 Identities=17% Similarity=0.135 Sum_probs=41.2
Q ss_pred HHHHHHHHhHhceeEeccC-C-----------CCCCCcc-CCCcHHHHHH----HHHHHHHHHHHHhcCCeEEeeCC
Q 006203 363 WDEILDICNQYDVALSIGD-G-----------LRPGSIY-DANDTAQFAE----LLTQGELTRRAWDKDVQVMNEGP 422 (657)
Q Consensus 363 FD~ileI~k~YDVtlSLGD-G-----------LRPG~i~-DA~D~AQ~~E----L~~LGEL~krA~e~gVQVMIEGP 422 (657)
+...++.+++++..|+|.| | ++|-.|. |..--..+.+ ...+-.+.+.|...|++|++||-
T Consensus 134 ~~~~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gV 210 (240)
T cd01948 134 ALATLRRLRALGVRIALDDFGTGYSSLSYLKRLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEGV 210 (240)
T ss_pred HHHHHHHHHHCCCeEEEeCCCCcHhhHHHHHhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEec
Confidence 6778888999999999976 2 3444332 3222212211 34577888999999999999984
No 256
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=28.56 E-value=1.6e+02 Score=31.42 Aligned_cols=77 Identities=19% Similarity=0.161 Sum_probs=47.6
Q ss_pred ChHHHHHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcC----CCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHH
Q 006203 235 SIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNS----AVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQA 310 (657)
Q Consensus 235 ~ie~EveKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~ns----pvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQA 310 (657)
++++=++.++.+.++|||.||=-+--.+.+++++..-+-. |+|+--+| +....++ +.+-.
T Consensus 167 ~~~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~~~~---------~~~~~~~-------~~eL~ 230 (285)
T TIGR02320 167 GMEDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLVIVP---------TSYYTTP-------TDEFR 230 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEEEec---------CCCCCCC-------HHHHH
Confidence 5899999999999999999996543356666665443221 34442222 1112234 34446
Q ss_pred hcCCCEEEEeccccccc
Q 006203 311 EQGVDYFTIHAGVLLRY 327 (657)
Q Consensus 311 eqGVDf~TIHaGv~~~~ 327 (657)
+.||..+++-....+..
T Consensus 231 ~lG~~~v~~~~~~~~aa 247 (285)
T TIGR02320 231 DAGISVVIYANHLLRAA 247 (285)
T ss_pred HcCCCEEEEhHHHHHHH
Confidence 78999987754444333
No 257
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.25 E-value=76 Score=33.73 Aligned_cols=69 Identities=29% Similarity=0.306 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhCCCEee-ecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEE
Q 006203 239 EVYKVQWATMWGADTVM-DLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYF 317 (657)
Q Consensus 239 EveKl~~A~~~GADtvM-DLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGVDf~ 317 (657)
.++-+..|+++|||.|| |=-+-.++.+..+.+.+... + ..+. ++-.||. | .+.|++-|+-||||+
T Consensus 191 ~leea~~a~~agaDiI~LDn~~~e~l~~~v~~l~~~~~-~-~~~~----leaSGGI----~----~~ni~~yA~tGvD~I 256 (278)
T PRK08385 191 SLEDALKAAKAGADIIMLDNMTPEEIREVIEALKREGL-R-ERVK----IEVSGGI----T----PENIEEYAKLDVDVI 256 (278)
T ss_pred CHHHHHHHHHcCcCEEEECCCCHHHHHHHHHHHHhcCc-C-CCEE----EEEECCC----C----HHHHHHHHHcCCCEE
Confidence 34556778899999995 54444455555554433210 0 1221 1222332 2 367888899999999
Q ss_pred EEec
Q 006203 318 TIHA 321 (657)
Q Consensus 318 TIHa 321 (657)
.+=+
T Consensus 257 s~ga 260 (278)
T PRK08385 257 SLGA 260 (278)
T ss_pred EeCh
Confidence 7644
No 258
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=28.10 E-value=7e+02 Score=25.92 Aligned_cols=53 Identities=21% Similarity=0.343 Sum_probs=38.0
Q ss_pred CCChHHHHHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhc
Q 006203 233 ASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQ 312 (657)
Q Consensus 233 ~~~ie~EveKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeq 312 (657)
..+.++|+++|++=+++|||-++ |=|+|++ +.|.+.+++-.+.
T Consensus 140 ~~~~~~~~~~L~~K~~aGA~f~i------------------------TQ~~fd~-------------~~~~~~~~~~~~~ 182 (272)
T TIGR00676 140 APNLEEDIENLKRKVDAGADYAI------------------------TQLFFDN-------------DDYYRFVDRCRAA 182 (272)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEe------------------------eccccCH-------------HHHHHHHHHHHHc
Confidence 44678999999999999998766 4455554 4555555555566
Q ss_pred CCCEEEEeccc
Q 006203 313 GVDYFTIHAGV 323 (657)
Q Consensus 313 GVDf~TIHaGv 323 (657)
|++ +.|++||
T Consensus 183 gi~-~PIi~Gi 192 (272)
T TIGR00676 183 GID-VPIIPGI 192 (272)
T ss_pred CCC-CCEeccc
Confidence 887 4788884
No 259
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=27.83 E-value=1.3e+02 Score=31.16 Aligned_cols=91 Identities=21% Similarity=0.163 Sum_probs=51.5
Q ss_pred CceeEeeccccCCCCCChHHHHHHHHHHHHhCCCEe-eecCCC--------CChHHHHHHHHhcCCCccccchhhhHHHH
Q 006203 219 FLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTV-MDLSTG--------RHIHETREWILRNSAVPVGTVPIYQALEK 289 (657)
Q Consensus 219 l~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADtv-MDLSTG--------gdi~~~R~~Il~nspvPVGTVPIYqA~~k 289 (657)
..+-|+++|.... .+..+|..++...++.|||.| ..||.- ++..+..+.|++... -.-.+|++= |
T Consensus 95 ~~~pvi~Si~~~~--~~~~~d~~~~a~~~~~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~-~~~~~Pv~v---K 168 (295)
T PF01180_consen 95 VDIPVIASINGDS--EEEIEDWAELAKRLEAGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVR-EAVDIPVFV---K 168 (295)
T ss_dssp -CEEEEEEE-TSS--SGHHHHHHHHHHHHHHHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHH-HHHSSEEEE---E
T ss_pred cceeEEEEeecCC--chhHHHHHHHHHHhcCcCCceEEEeeccCCCCccccccCHHHHHHHHHHHH-hccCCCEEE---E
Confidence 3445566664444 566777777777777999976 566651 122333333332111 011333321 2
Q ss_pred hcCccCCCCHHHHHHHHHHHHhcCCCEEE
Q 006203 290 VDGIAENLSWEVFRDTLIEQAEQGVDYFT 318 (657)
Q Consensus 290 ~~g~~~~lt~e~~~d~ieeQAeqGVDf~T 318 (657)
-.-+++....+..+.+.+++|+|.++
T Consensus 169 ---L~p~~~~~~~~~~~~~~~~~g~~gi~ 194 (295)
T PF01180_consen 169 ---LSPNFTDIEPFAIAAELAADGADGIV 194 (295)
T ss_dssp ---E-STSSCHHHHHHHHHHHTHTECEEE
T ss_pred ---ecCCCCchHHHHHHHHhhccceeEEE
Confidence 23456777778888888899999988
No 260
>PRK09061 D-glutamate deacylase; Validated
Probab=27.69 E-value=3.3e+02 Score=30.85 Aligned_cols=91 Identities=13% Similarity=0.102 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhcee
Q 006203 297 LSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVA 376 (657)
Q Consensus 297 lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVt 376 (657)
++.++|+..++.-++.|..++ +|+--.-. ++ .--..+.++++++++++.++-
T Consensus 196 ~~~~eL~~l~~~A~~~g~~v~-~H~e~~~~------------~~---------------~~~e~~av~~~i~lA~~~G~r 247 (509)
T PRK09061 196 TGHKEYLELARLAARAGVPTY-THVRYLSN------------VD---------------PRSSVDAYQELIAAAAETGAH 247 (509)
T ss_pred CCHHHHHHHHHHHHHcCCEEE-EEecCccc------------CC---------------chhHHHHHHHHHHHHHHhCCC
Confidence 477888888888888888655 68842111 00 112356779999999999954
Q ss_pred EeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCC
Q 006203 377 LSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHI 425 (657)
Q Consensus 377 lSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHV 425 (657)
+.+.=--=.|. .+ ....-+++++|++.|+.|..|=.=|-
T Consensus 248 v~IsHlss~g~-------~~---~~~~le~I~~Ar~~Gi~Vt~e~~P~~ 286 (509)
T PRK09061 248 MHICHVNSTSL-------RD---IDRCLALVEKAQAQGLDVTTEAYPYG 286 (509)
T ss_pred EEEEeeccCCc-------cc---HHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 44331000011 12 23445789999999999999974444
No 261
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=27.52 E-value=3.1e+02 Score=32.52 Aligned_cols=108 Identities=18% Similarity=0.284 Sum_probs=62.4
Q ss_pred ccCCCCHHHHHHHHHHH-------HhcCCCEEEEecc---ccccccccccCcccCccccccHHHHHHHHHcCCcCchhhh
Q 006203 293 IAENLSWEVFRDTLIEQ-------AEQGVDYFTIHAG---VLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEH 362 (657)
Q Consensus 293 ~~~~lt~e~~~d~ieeQ-------AeqGVDf~TIHaG---v~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~ 362 (657)
.+..||.+++-++|+.- .+.|.|.+-||+| +.-+.+--..++.|. .-|||+.-. -.|+.
T Consensus 537 ~p~~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD--~yGGslenR-------~r~~~-- 605 (765)
T PRK08255 537 VPREMTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTD--EYGGSLENR-------LRYPL-- 605 (765)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCC--CCCCCHHHH-------hHHHH--
Confidence 45789988887776543 4579999999998 444455444444444 369997432 22333
Q ss_pred HHHHHHHHhH---hc----eeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEE-eeCCCC
Q 006203 363 WDEILDICNQ---YD----VALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVM-NEGPGH 424 (657)
Q Consensus 363 FD~ileI~k~---YD----VtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVM-IEGPGH 424 (657)
+|++..|+ -| |-||..|.+..| .+ +.|. -+|+++.-++||..+ |-++++
T Consensus 606 --eiv~~ir~~~~~~~~v~~ri~~~~~~~~g-----~~---~~~~---~~~~~~l~~~g~d~i~vs~g~~ 662 (765)
T PRK08255 606 --EVFRAVRAVWPAEKPMSVRISAHDWVEGG-----NT---PDDA---VEIARAFKAAGADLIDVSSGQV 662 (765)
T ss_pred --HHHHHHHHhcCCCCeeEEEEccccccCCC-----CC---HHHH---HHHHHHHHhcCCcEEEeCCCCC
Confidence 45555554 24 345555544322 11 2232 367777778899844 544444
No 262
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=27.48 E-value=3.2e+02 Score=29.10 Aligned_cols=98 Identities=18% Similarity=0.112 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHHHHhc-CCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCC--cCchhhhH----HHHH
Q 006203 295 ENLSWEVFRDTLIEQAEQ-GVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHK--ENFAYEHW----DEIL 367 (657)
Q Consensus 295 ~~lt~e~~~d~ieeQAeq-GVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~--ENplY~~F----D~il 367 (657)
...+.|.|...++.-.+. |+ .+++|+.=+...+.....+.-. ..-...|+..++- .+.+..|. |+-+
T Consensus 181 ~~~s~e~l~~~~~~A~~~~g~-~v~~H~~e~~~~~~~~~~~~~~-----~~~~~~~l~~~g~lg~~~~~~H~~~~~~~~~ 254 (401)
T TIGR02967 181 PTSSPEQLAAAGELAKEYPDV-YVQTHLSENKDEIAWVKELFPE-----AKDYLDVYDHYGLLGRRSVFAHCIHLSDEEC 254 (401)
T ss_pred CcCcHHHHHHHHHHHHhCCCC-eeEEEECCCchHHHHHHHHcCC-----CCcHHHHHHHCCCCCCCeEEEecccCCHHHH
Confidence 346677777666666666 88 5679997444433322111100 0012345544442 22233332 4578
Q ss_pred HHHhHhceeEe--------ccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe
Q 006203 368 DICNQYDVALS--------IGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN 419 (657)
Q Consensus 368 eI~k~YDVtlS--------LGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMI 419 (657)
+++++.++.++ ||+|+-| ++.++++||.|.+
T Consensus 255 ~~l~~~g~~v~~~P~~~~~~~~g~~~---------------------~~~~~~~Gv~v~l 293 (401)
T TIGR02967 255 QRLAETGAAIAHCPTSNLFLGSGLFN---------------------LKKALEHGVRVGL 293 (401)
T ss_pred HHHHHcCCeEEEChHHHHHhccCCCC---------------------HHHHHHCCCeEEE
Confidence 99999998775 4554332 4556889999988
No 263
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=27.25 E-value=2.1e+02 Score=26.53 Aligned_cols=23 Identities=13% Similarity=0.109 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEecc
Q 006203 300 EVFRDTLIEQAEQGVDYFTIHAG 322 (657)
Q Consensus 300 e~~~d~ieeQAeqGVDf~TIHaG 322 (657)
+++.+...+-.+.||.+++|..|
T Consensus 117 ~~~~~~a~~lk~~gi~i~~ig~g 139 (164)
T cd01482 117 DDVELPARVLRNLGVNVFAVGVK 139 (164)
T ss_pred chHHHHHHHHHHCCCEEEEEecC
Confidence 45555555556789999999776
No 264
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=27.15 E-value=6.7e+02 Score=25.38 Aligned_cols=109 Identities=13% Similarity=0.141 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHh---CCCEeeecCCCCChHHHHHHHHh---------cCCCccccchhhhHHHHhcCccC-----CCCH
Q 006203 237 EEEVYKVQWATMW---GADTVMDLSTGRHIHETREWILR---------NSAVPVGTVPIYQALEKVDGIAE-----NLSW 299 (657)
Q Consensus 237 e~EveKl~~A~~~---GADtvMDLSTGgdi~~~R~~Il~---------nspvPVGTVPIYqA~~k~~g~~~-----~lt~ 299 (657)
+++++.++...+. +..-.+|--.+-++++.++.+-+ .-|+|......|+.+.+.-+.+. -.+.
T Consensus 113 ~~d~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~ipia~dE~~~~~ 192 (265)
T cd03315 113 ARDVAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDLGLDYVEQPLPADDLEGRAALARATDTPIMADESAFTP 192 (265)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhcCCCEEECCCCcccHHHHHHHHhhCCCCEEECCCCCCH
Confidence 5555554443332 34556676666677766654322 22444455555655654422221 1244
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEec
Q 006203 300 EVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSI 379 (657)
Q Consensus 300 e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSL 379 (657)
+++.+.|+ ..++|++.+-.. |+-|| +.+-++.++|+++++.+.+
T Consensus 193 ~~~~~~i~---~~~~d~v~~k~~-----------~~GGi----------------------~~~~~~~~~A~~~gi~~~~ 236 (265)
T cd03315 193 HDAFRELA---LGAADAVNIKTA-----------KTGGL----------------------TKAQRVLAVAEALGLPVMV 236 (265)
T ss_pred HHHHHHHH---hCCCCEEEEecc-----------cccCH----------------------HHHHHHHHHHHHcCCcEEe
Confidence 55555443 345777755432 22222 5666777777777777777
Q ss_pred cC
Q 006203 380 GD 381 (657)
Q Consensus 380 GD 381 (657)
|.
T Consensus 237 ~~ 238 (265)
T cd03315 237 GS 238 (265)
T ss_pred cC
Confidence 63
No 265
>PRK06740 histidinol-phosphatase; Validated
Probab=27.00 E-value=1.3e+02 Score=32.32 Aligned_cols=86 Identities=16% Similarity=0.222 Sum_probs=45.0
Q ss_pred CCChHHHHHHHHHHHHhCCC--Ee-----eecCCCCChHHHHHHHHhcC--CCccccchhhh--------HHHHhc-Ccc
Q 006203 233 ASSIEEEVYKVQWATMWGAD--TV-----MDLSTGRHIHETREWILRNS--AVPVGTVPIYQ--------ALEKVD-GIA 294 (657)
Q Consensus 233 ~~~ie~EveKl~~A~~~GAD--tv-----MDLSTGgdi~~~R~~Il~ns--pvPVGTVPIYq--------A~~k~~-g~~ 294 (657)
....-+|+++|+. +|..+ .| +|.-.+ ....+++ +++.. ..-||+|=-.. ..+... +..
T Consensus 121 l~~Y~~ei~~Lke--kY~~~~I~Il~GlE~dy~~~-~~~~~~~-~l~~~~~DyvIgSVH~i~g~~~~~~~~~~~~~~~~~ 196 (331)
T PRK06740 121 LDDFTKAIEEAKE--RWSKRGVTLKLGIEADYFIG-GEQELQS-LLALGDFDYVIGSVHFLNGWGFDNPDTKEYFEEHDL 196 (331)
T ss_pred HHHHHHHHHHHHH--HhccCCCeEEEEEEeccCCC-cHHHHHH-HHhcCCCCEEEEeeeEeCCcCCCCccHHHHhcCCCH
Confidence 3455667777775 55432 34 555433 3456775 55433 45677662111 112221 222
Q ss_pred CCCCHHHHHHHHHHHHhcC-CCEEEEecccc
Q 006203 295 ENLSWEVFRDTLIEQAEQG-VDYFTIHAGVL 324 (657)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqG-VDf~TIHaGv~ 324 (657)
.++ ++.+++.+++-++.| +|++ =|..+-
T Consensus 197 ~~~-~~~Yf~~~~~~i~~~~fdvI-gHpDli 225 (331)
T PRK06740 197 YAL-YDTFFKTVECAIRSELFDII-AHLDNI 225 (331)
T ss_pred HHH-HHHHHHHHHHHHHcCCCCEe-eCccHH
Confidence 222 477889998888765 4444 366643
No 266
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=26.87 E-value=2.3e+02 Score=29.11 Aligned_cols=77 Identities=22% Similarity=0.227 Sum_probs=42.4
Q ss_pred ChHHHHHHHHHHHHhCCCEe-eecCC----------CCChH---HHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHH
Q 006203 235 SIEEEVYKVQWATMWGADTV-MDLST----------GRHIH---ETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWE 300 (657)
Q Consensus 235 ~ie~EveKl~~A~~~GADtv-MDLST----------Ggdi~---~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e 300 (657)
++++=++=++.+.++|+|.| +.+|+ +++.+ ++=+++-++..+||.- |.. .+.+
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~v--------Kl~-----~~~~ 166 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIV--------KLT-----PNVT 166 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEE--------EeC-----CCch
Confidence 35444555667778899987 55553 23333 2333443443344331 111 1234
Q ss_pred HHHHHHHHHHhcCCCEEEEecccc
Q 006203 301 VFRDTLIEQAEQGVDYFTIHAGVL 324 (657)
Q Consensus 301 ~~~d~ieeQAeqGVDf~TIHaGv~ 324 (657)
++.+..+.-.+.|+|+++++..+.
T Consensus 167 ~~~~~a~~~~~~G~d~i~~~nt~~ 190 (296)
T cd04740 167 DIVEIARAAEEAGADGLTLINTLK 190 (296)
T ss_pred hHHHHHHHHHHcCCCEEEEECCCc
Confidence 566666666678999999986543
No 267
>PF10515 APP_amyloid: beta-amyloid precursor protein C-terminus; InterPro: IPR019543 This is the amyloid, C-terminal, protein of the beta-Amyloid precursor protein (APP) which is a conserved and ubiquitous transmembrane glycoprotein strongly implicated in the pathogenesis of Alzheimer's disease but whose normal biological function is unknown. The C-terminal 100 residues are released and aggregate into amyloid deposits which are strongly implicated in the pathology of Alzheimer's disease plaque-formation. The domain is associated with IPR008154 from INTERPRO, further towards the N terminus. ; PDB: 2ROZ_A 3DXD_D 1X11_D 2LP1_A 2LOH_A 3MXC_L 3MXY_L 3DXC_B 3DXE_D 3L81_B ....
Probab=26.41 E-value=12 Score=31.21 Aligned_cols=18 Identities=17% Similarity=0.093 Sum_probs=14.8
Q ss_pred HHHHHHcCCcCchhhhHH
Q 006203 347 AKWCLAYHKENFAYEHWD 364 (657)
Q Consensus 347 a~Wml~h~~ENplY~~FD 364 (657)
..=|..|+=|||-|..||
T Consensus 35 ~~~mQ~nGYENPTYkyfE 52 (52)
T PF10515_consen 35 LSNMQNNGYENPTYKYFE 52 (52)
T ss_dssp HHHHHCTEEESCTCHHCC
T ss_pred HHHHHhcCCcCCceeccC
Confidence 345788999999999886
No 268
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=26.31 E-value=53 Score=34.99 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEec
Q 006203 297 LSWEVFRDTLIEQAEQGVDYFTIHA 321 (657)
Q Consensus 297 lt~e~~~d~ieeQAeqGVDf~TIHa 321 (657)
++.+.+.+.|..-|.-+...+-+|-
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~Hl 39 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHL 39 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEE
Confidence 6789999999999999999999996
No 269
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=26.21 E-value=2.3e+02 Score=28.95 Aligned_cols=82 Identities=16% Similarity=0.126 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHH---hHh-
Q 006203 298 SWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDIC---NQY- 373 (657)
Q Consensus 298 t~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~---k~Y- 373 (657)
+.+++.+.++.-.+.|+|++-||++--. .. ..|+ +..+++.++||+ |+.
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~-----~~------~~~~----------------~~~~~~~~~eiv~~vr~~~ 161 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPN-----VG------GGRQ----------------LGQDPEAVANLLKAVKAAV 161 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCC-----CC------CCcc----------------cccCHHHHHHHHHHHHHcc
Confidence 6678888887777779999999997321 00 0111 334455544443 333
Q ss_pred ceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe
Q 006203 374 DVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN 419 (657)
Q Consensus 374 DVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMI 419 (657)
|+.+++ .|||+- | ....-++++++.++||..++
T Consensus 162 ~~pv~v--Kl~~~~-----~------~~~~~~~a~~l~~~Gad~i~ 194 (289)
T cd02810 162 DIPLLV--KLSPYF-----D------LEDIVELAKAAERAGADGLT 194 (289)
T ss_pred CCCEEE--EeCCCC-----C------HHHHHHHHHHHHHcCCCEEE
Confidence 544444 355541 2 12345677888899998776
No 270
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=26.19 E-value=5.8e+02 Score=24.34 Aligned_cols=17 Identities=18% Similarity=0.161 Sum_probs=13.6
Q ss_pred HHHHHhcCCCEEEEecc
Q 006203 306 LIEQAEQGVDYFTIHAG 322 (657)
Q Consensus 306 ieeQAeqGVDf~TIHaG 322 (657)
++.-++.|+||+++|+-
T Consensus 70 ~~~~~~aGad~i~~h~~ 86 (202)
T cd04726 70 AEMAFKAGADIVTVLGA 86 (202)
T ss_pred HHHHHhcCCCEEEEEee
Confidence 45567889999999963
No 271
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=25.99 E-value=1.5e+02 Score=28.41 Aligned_cols=70 Identities=16% Similarity=0.129 Sum_probs=47.5
Q ss_pred hHHHHHHHHhHh-----ceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHH
Q 006203 362 HWDEILDICNQY-----DVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQK 436 (657)
Q Consensus 362 ~FD~ileI~k~Y-----DVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~l 436 (657)
.+++|+++.+++ -||||=|+ + |.. .|.+|+++++++|..+.||. |+.+-+ +
T Consensus 47 t~eel~~~I~~~~~~~~gVt~SGGE-l------------~~~---~l~~ll~~lk~~Gl~i~l~T-g~~~~~-~------ 102 (147)
T TIGR02826 47 TPEYLTKTLDKYRSLISCVLFLGGE-W------------NRE---ALLSLLKIFKEKGLKTCLYT-GLEPKD-I------ 102 (147)
T ss_pred CHHHHHHHHHHhCCCCCEEEEechh-c------------CHH---HHHHHHHHHHHCCCCEEEEC-CCCCHH-H------
Confidence 678899998887 38998887 2 333 45677788888999999997 776532 2
Q ss_pred HHHhcCCCCccccCccccc
Q 006203 437 QLEWCNEAPFYTLGPLTTD 455 (657)
Q Consensus 437 qk~lC~~APfYvLGPLvTD 455 (657)
..+++...=+.+.||-+-+
T Consensus 103 ~~~il~~iD~l~~g~y~~~ 121 (147)
T TIGR02826 103 PLELVQHLDYLKTGRWIHT 121 (147)
T ss_pred HHHHHHhCCEEEEChHHHH
Confidence 2333344456677775443
No 272
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=25.98 E-value=78 Score=34.12 Aligned_cols=74 Identities=18% Similarity=0.240 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcCCCEEEEeccc----cccccccccCcccCccccccHHHHHHHHHcCCcCchh--hhHHHHHHHHhHhce
Q 006203 302 FRDTLIEQAEQGVDYFTIHAGV----LLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAY--EHWDEILDICNQYDV 375 (657)
Q Consensus 302 ~~d~ieeQAeqGVDf~TIHaGv----~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY--~~FD~ileI~k~YDV 375 (657)
++-+++.-.+.|...+.++-|. +-++++++...+.++.+.|||++ -..+-+|+- +.++.+++.+++|++
T Consensus 19 i~~~v~~~~~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~L-----gtsR~~~~~~~~~~~~~~~~l~~~~I 93 (338)
T cd00363 19 IRGVVRSAIAEGLEVYGIYEGYAGLVEGDIKELDWESVSDIINRGGTII-----GSARCKEFRTEEGRAKAAENLKKHGI 93 (338)
T ss_pred HHHHHHHHHHCCCEEEEEecChHHhCCCCeEeCCHHHhcchhhCCCeec-----ccCCCCccCCHHHHHHHHHHHHHhCC
Confidence 3444555556788999999876 45667777788999999999965 445656643 468999999999987
Q ss_pred e--Eecc
Q 006203 376 A--LSIG 380 (657)
Q Consensus 376 t--lSLG 380 (657)
. +-+|
T Consensus 94 ~~Lv~IG 100 (338)
T cd00363 94 DALVVIG 100 (338)
T ss_pred CEEEEeC
Confidence 4 4555
No 273
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=25.96 E-value=2.3e+02 Score=29.47 Aligned_cols=19 Identities=16% Similarity=-0.034 Sum_probs=13.9
Q ss_pred HHHHHHHhCCCEeeecCCC
Q 006203 242 KVQWATMWGADTVMDLSTG 260 (657)
Q Consensus 242 Kl~~A~~~GADtvMDLSTG 260 (657)
-+..+++.|.-||+|....
T Consensus 106 ~~~~~l~~GvTtv~d~~~~ 124 (411)
T cd01298 106 ALAEMIRSGTTTFADMYFF 124 (411)
T ss_pred HHHHHHhcCccEEECcccc
Confidence 3555678999999987543
No 274
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=25.76 E-value=1.7e+02 Score=30.67 Aligned_cols=181 Identities=20% Similarity=0.190 Sum_probs=99.0
Q ss_pred eEeeccccCCCCCChHHHHHHHHHHHHhCCCE----eeecCCCCChH---HHHHHHHhcCCCccccchhhhHHHHhcCcc
Q 006203 222 KVNANIGNSAVASSIEEEVYKVQWATMWGADT----VMDLSTGRHIH---ETREWILRNSAVPVGTVPIYQALEKVDGIA 294 (657)
Q Consensus 222 KVNANIGtS~~~~~ie~EveKl~~A~~~GADt----vMDLSTGgdi~---~~R~~Il~nspvPVGTVPIYqA~~k~~g~~ 294 (657)
||-.+| -|++...+.+|++++ .++|||. |||-.-=.||. .+=++|.+.++.|+-
T Consensus 5 ~iapSI-LsaD~~~l~~el~~~---~~agad~iH~DVMDghFVPNiTfGp~~v~~l~~~t~~p~D--------------- 65 (220)
T COG0036 5 KIAPSI-LSADFARLGEELKAL---EAAGADLIHIDVMDGHFVPNITFGPPVVKALRKITDLPLD--------------- 65 (220)
T ss_pred eeeeeh-hhCCHhHHHHHHHHH---HHcCCCEEEEeccCCCcCCCcccCHHHHHHHhhcCCCceE---------------
Confidence 333333 356667778887765 4679997 58844333321 222222223333221
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEecccccccccc------ccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHH
Q 006203 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPL------TAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILD 368 (657)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~------~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ile 368 (657)
..|=.+.-...|+.-++.|.|++|+|+- .-.++.+ ..+-.-|||= || =|-.|.|-.
T Consensus 66 vHLMV~~p~~~i~~fa~agad~It~H~E-~~~~~~r~i~~Ik~~G~kaGv~l----------------nP-~Tp~~~i~~ 127 (220)
T COG0036 66 VHLMVENPDRYIEAFAKAGADIITFHAE-ATEHIHRTIQLIKELGVKAGLVL----------------NP-ATPLEALEP 127 (220)
T ss_pred EEEecCCHHHHHHHHHHhCCCEEEEEec-cCcCHHHHHHHHHHcCCeEEEEE----------------CC-CCCHHHHHH
Confidence 1111122245677779999999999998 3333332 2234444441 44 355677777
Q ss_pred HHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccc
Q 006203 369 ICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYT 448 (657)
Q Consensus 369 I~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYv 448 (657)
++.+-|+.|=+ ..=||--.=+-=.+.+.-+..+-++.+. .| +.+||==|=+-.+.|+ .-.. -||=+||
T Consensus 128 ~l~~vD~VllM--sVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~---~~-~~~IeVDGGI~~~t~~----~~~~--AGad~~V 195 (220)
T COG0036 128 VLDDVDLVLLM--SVNPGFGGQKFIPEVLEKIRELRAMIDE---RL-DILIEVDGGINLETIK----QLAA--AGADVFV 195 (220)
T ss_pred HHhhCCEEEEE--eECCCCcccccCHHHHHHHHHHHHHhcc---cC-CeEEEEeCCcCHHHHH----HHHH--cCCCEEE
Confidence 88888988765 3556665555444444444444444433 55 7777766666544332 2111 4677777
Q ss_pred cCc
Q 006203 449 LGP 451 (657)
Q Consensus 449 LGP 451 (657)
.|-
T Consensus 196 aGS 198 (220)
T COG0036 196 AGS 198 (220)
T ss_pred EEE
Confidence 665
No 275
>PRK01060 endonuclease IV; Provisional
Probab=25.49 E-value=7e+02 Score=25.04 Aligned_cols=98 Identities=14% Similarity=0.183 Sum_probs=60.1
Q ss_pred HHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhcee---Ee
Q 006203 302 FRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVA---LS 378 (657)
Q Consensus 302 ~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVt---lS 378 (657)
+-++|+.-++.|.|.|=+-.+--.. |- ...-..+..+++-+.+++|+++ ++
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~----------------------~~----~~~~~~~~~~~lk~~~~~~gl~~~~~~ 67 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQ----------------------WK----RKPLEELNIEAFKAACEKYGISPEDIL 67 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCC----------------------Cc----CCCCCHHHHHHHHHHHHHcCCCCCceE
Confidence 6778888899999999875431110 10 0011233466777888899887 55
Q ss_pred ccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCC
Q 006203 379 IGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIP 426 (657)
Q Consensus 379 LGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVP 426 (657)
.-... +..+++...+-.=..+..+-+-.+.|.+.|+.+++=-||+.+
T Consensus 68 ~h~~~-~~nl~~~d~~~r~~s~~~~~~~i~~A~~lga~~vv~h~G~~~ 114 (281)
T PRK01060 68 VHAPY-LINLGNPNKEILEKSRDFLIQEIERCAALGAKLLVFHPGSHL 114 (281)
T ss_pred Eecce-EecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcCC
Confidence 53322 133444333323333556667777888999998888888854
No 276
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=25.45 E-value=2.5e+02 Score=30.03 Aligned_cols=26 Identities=38% Similarity=0.473 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEecc
Q 006203 297 LSWEVFRDTLIEQAEQGVDYFTIHAG 322 (657)
Q Consensus 297 lt~e~~~d~ieeQAeqGVDf~TIHaG 322 (657)
-|.++..+.+..-.+.|||++|||+.
T Consensus 148 ~t~~~~~~~~~~l~~aG~d~i~vh~R 173 (333)
T PRK11815 148 DSYEFLCDFVDTVAEAGCDTFIVHAR 173 (333)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 35677777777777899999999963
No 277
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=25.44 E-value=7.7e+02 Score=25.55 Aligned_cols=25 Identities=12% Similarity=0.100 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeccc
Q 006203 299 WEVFRDTLIEQAEQGVDYFTIHAGV 323 (657)
Q Consensus 299 ~e~~~d~ieeQAeqGVDf~TIHaGv 323 (657)
.+++.+..+.-.+.|||.+++|..+
T Consensus 168 ~~~~~~~a~~l~~~G~d~i~~~nt~ 192 (301)
T PRK07259 168 VTDIVEIAKAAEEAGADGLSLINTL 192 (301)
T ss_pred chhHHHHHHHHHHcCCCEEEEEccc
Confidence 3566777776677899999997654
No 278
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=25.40 E-value=1.6e+02 Score=31.19 Aligned_cols=98 Identities=16% Similarity=0.144 Sum_probs=66.3
Q ss_pred ceeEeeccccCCCCCChHHHHHHHHHHHHhCCCE---eeecC--CCCChHHHHHHHHhcCCCccccchhhhHHHHhcCcc
Q 006203 220 LVKVNANIGNSAVASSIEEEVYKVQWATMWGADT---VMDLS--TGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIA 294 (657)
Q Consensus 220 ~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADt---vMDLS--TGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~ 294 (657)
.|||=.=||=....+..+.-+.-+++|++.|||- ||+++ -.||.+.+++.|-+-..+--+-+|+ |+-=..
T Consensus 66 ~vkv~tVigFP~G~~~t~~K~~Ea~~Ai~~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~~~~l-----KVIlEt 140 (257)
T PRK05283 66 EIRIATVTNFPHGNDDIDIALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFELVKACKEACAANVLL-----KVIIET 140 (257)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCCCceE-----EEEEec
Confidence 4777777777777778888888999999999964 56654 3468888888775433221001111 221112
Q ss_pred CCCCHHH-HHHHHHHHHhcCCCEEEEecc
Q 006203 295 ENLSWEV-FRDTLIEQAEQGVDYFTIHAG 322 (657)
Q Consensus 295 ~~lt~e~-~~d~ieeQAeqGVDf~TIHaG 322 (657)
-.||.++ +....+--++.|+||+=-=.|
T Consensus 141 ~~L~~ee~i~~a~~~a~~aGADFVKTSTG 169 (257)
T PRK05283 141 GELKDEALIRKASEIAIKAGADFIKTSTG 169 (257)
T ss_pred cccCCHHHHHHHHHHHHHhCCCEEEcCCC
Confidence 4688885 888999999999999855444
No 279
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=25.37 E-value=2.7e+02 Score=27.86 Aligned_cols=119 Identities=23% Similarity=0.220 Sum_probs=65.7
Q ss_pred eEeeccccCCCCCChHHH-----HHHHHHHHHhCCCEeeecCCC-----CChHHHHHHHHh---cC---CCccccchhhh
Q 006203 222 KVNANIGNSAVASSIEEE-----VYKVQWATMWGADTVMDLSTG-----RHIHETREWILR---NS---AVPVGTVPIYQ 285 (657)
Q Consensus 222 KVNANIGtS~~~~~ie~E-----veKl~~A~~~GADtvMDLSTG-----gdi~~~R~~Il~---ns---pvPVGTVPIYq 285 (657)
|+..=|+-....+..+.. +.-++.|++.|||.|-=+-.- ++-++..+.|-+ .+ .+|+ |.+
T Consensus 56 ~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~v----IlE 131 (236)
T PF01791_consen 56 KVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKV----ILE 131 (236)
T ss_dssp EEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEE----EEE
T ss_pred ccceEEEeCCCCCccccccccchHHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEE----EEE
Confidence 555555555566677788 899999999999987543322 345555554432 11 1111 111
Q ss_pred HHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEecc----ccccccc---cccC-----cccCccccccH
Q 006203 286 ALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAG----VLLRYIP---LTAK-----RMTGIVSRGGS 344 (657)
Q Consensus 286 A~~k~~g~~~~lt~e~~~d~ieeQAeqGVDf~TIHaG----v~~~~v~---~~~~-----RvtgIVSRGGS 344 (657)
.+-+-.....+..+|.+....+--++.|+||+=.-.| .+...+. .... .-+||+--||.
T Consensus 132 ~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi 202 (236)
T PF01791_consen 132 PYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGKPVGATPEDVELMRKAVEAAPVPGKVGVKASGGI 202 (236)
T ss_dssp ECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSSSCSHHHHHHHHHHHHHTHSSTTTSEEEEESSS
T ss_pred EecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCccccccHHHHHHHHHHHHhcCCCcceEEEEeCCC
Confidence 1000000001115567888888899999999998888 2222222 1122 44568888997
No 280
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=25.14 E-value=6.1e+02 Score=24.25 Aligned_cols=67 Identities=15% Similarity=0.202 Sum_probs=38.8
Q ss_pred HHHHHHHhcCCeEEeeCC--------CCCCCCchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhhcc
Q 006203 405 ELTRRAWDKDVQVMNEGP--------GHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALG 476 (657)
Q Consensus 405 EL~krA~e~gVQVMIEGP--------GHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGYDHITsAIGaA~aa~~G 476 (657)
+-+++|.+.|+..+.=|| |..|..- -..++.-++.+.+.|.|++|=+.. ++|..+ ..+|
T Consensus 115 ~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~v~a~GGI~~------~~i~~~------~~~G 181 (212)
T PRK00043 115 EEAAAALAAGADYVGVGPIFPTPTKKDAKAPQG-LEGLREIRAAVGDIPIVAIGGITP------ENAPEV------LEAG 181 (212)
T ss_pred HHHHHHhHcCCCEEEECCccCCCCCCCCCCCCC-HHHHHHHHHhcCCCCEEEECCcCH------HHHHHH------HHcC
Confidence 345778889998886442 1121111 234555556666689999997633 444433 3457
Q ss_pred cceeeecC
Q 006203 477 TALLCYVT 484 (657)
Q Consensus 477 adfLCYVT 484 (657)
|+.+|..+
T Consensus 182 a~gv~~gs 189 (212)
T PRK00043 182 ADGVAVVS 189 (212)
T ss_pred CCEEEEeH
Confidence 77776543
No 281
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=25.08 E-value=1.3e+02 Score=32.14 Aligned_cols=126 Identities=19% Similarity=0.140 Sum_probs=72.4
Q ss_pred ccCcccCccccccHHHHHHH-HHcCCcCchhhhHHHHHHHHhHhc-------------------------eeEeccCCCC
Q 006203 331 TAKRMTGIVSRGGSIHAKWC-LAYHKENFAYEHWDEILDICNQYD-------------------------VALSIGDGLR 384 (657)
Q Consensus 331 ~~~RvtgIVSRGGSi~a~Wm-l~h~~ENplY~~FD~ileI~k~YD-------------------------VtlSLGDGLR 384 (657)
...|+.|.===||.|+ +-+ +-.+. +.||+|++++++.| ++=|.|.-.+
T Consensus 121 ~~~Rv~Gt~iGGGTf~-GL~~LL~~~-----~~~~el~~lA~~G~~~~vDl~V~dIYg~~y~~~~L~~d~iASsfGkv~~ 194 (279)
T TIGR00555 121 NYERVGGTSLGGGTFL-GLGKLLTGI-----QTFDELLEMAQHGDRTNVDLLVGDIYGGDYSESGLDGSLTASSFGKVLS 194 (279)
T ss_pred cEEEEcCccccHHHHH-HHHHHHcCC-----CCHHHHHHHHHcCCCcccccccccccCCCCCCCCCCcceeeeccchhhc
Confidence 4579999866666666 655 33333 78999999999998 4444453332
Q ss_pred CCCccCCCcHHHHHHH-----HHHHHHHH-HHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCccccccCC
Q 006203 385 PGSIYDANDTAQFAEL-----LTQGELTR-RAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAP 458 (657)
Q Consensus 385 PG~i~DA~D~AQ~~EL-----~~LGEL~k-rA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvTDIAp 458 (657)
..--.++..+.-.+=| .++|.|+. +|..+++.-++=.-| ||...+.-++...+..+ ||- ..=+-|
T Consensus 195 ~~~~~~~~~eDiAaSLl~mV~~nIg~lA~~~a~~~~~~~IvF~Gg--~L~~~~~l~~~~~~~~~---~~~----~~~ifp 265 (279)
T TIGR00555 195 KHLDQSFSPEDIAASLLGLIGNNIGQIAYLCALRYNIDRIVFIGS--FLRNNQLLMKVLSYATN---FWS----KKALFL 265 (279)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECC--cccCCHHHHHHHHHHHh---hcC----ceEEEE
Confidence 2000122222222111 26677766 677788877665544 23332323333222222 333 333778
Q ss_pred CchhHHHhHHHHH
Q 006203 459 GYDHITSAIGAAN 471 (657)
Q Consensus 459 GYDHITsAIGaA~ 471 (657)
-+.+-..|||||+
T Consensus 266 ~h~~y~gAlGAaL 278 (279)
T TIGR00555 266 EHEGYSGAIGALL 278 (279)
T ss_pred CCcchHHHhhhcc
Confidence 8999999999986
No 282
>PRK03202 6-phosphofructokinase; Provisional
Probab=25.01 E-value=80 Score=33.98 Aligned_cols=74 Identities=20% Similarity=0.318 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCCCEEEEeccc----cccccccccCcccCccccccHHHHHHHHHcCCcCchh--hhHHHHHHHHhHhcee
Q 006203 303 RDTLIEQAEQGVDYFTIHAGV----LLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAY--EHWDEILDICNQYDVA 376 (657)
Q Consensus 303 ~d~ieeQAeqGVDf~TIHaGv----~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY--~~FD~ileI~k~YDVt 376 (657)
+-+++.-.+.|...+.+|-|. +-+.++++...+-++.+.||++ +...+-+|+- +.++.+++.|++|++.
T Consensus 21 ~~~~~~~~~~g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~-----LgtsR~~~~~~~~~~~~~~~~l~~~~Id 95 (320)
T PRK03202 21 RAVVRTAISEGLEVYGIYDGYAGLLEGDIVKLDLKSVSDIINRGGTI-----LGSARFPEFKDEEGRAKAIENLKKLGID 95 (320)
T ss_pred HHHHHHHHHCCCeEEEEecChhhhcCCCEEECCHHHHhhHHhCCCcc-----cccCCCCCcCCHHHHHHHHHHHHHcCCC
Confidence 444555556799999998876 3455566778899999999997 4556666644 5799999999999764
Q ss_pred --EeccC
Q 006203 377 --LSIGD 381 (657)
Q Consensus 377 --lSLGD 381 (657)
+-+|.
T Consensus 96 ~Li~IGG 102 (320)
T PRK03202 96 ALVVIGG 102 (320)
T ss_pred EEEEeCC
Confidence 55654
No 283
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=24.81 E-value=3.1e+02 Score=25.72 Aligned_cols=105 Identities=12% Similarity=0.095 Sum_probs=55.2
Q ss_pred HHHHHHHhCCCEeeecCCCCC-------hHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCC
Q 006203 242 KVQWATMWGADTVMDLSTGRH-------IHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGV 314 (657)
Q Consensus 242 Kl~~A~~~GADtvMDLSTGgd-------i~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGV 314 (657)
=+..+++.|.-||+|.++... +..+.+.+-+.+.+ -.+..+.+....... .+...+.+.+.|++....|+
T Consensus 40 ~~~~~~~~Gvttv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~ 116 (275)
T cd01292 40 ALEALLAGGVTTVVDMGSTPPPTTTKAAIEAVAEAARASAGI--RVVLGLGIPGVPAAV-DEDAEALLLELLRRGLELGA 116 (275)
T ss_pred HHHHHHhcCceEEEeeEeecCccccchHHHHHHHHHHHhcCe--eeEEeccCCCCcccc-chhHHHHHHHHHHHHHhcCC
Confidence 356689999999999876543 45566655543211 111111111000000 11122334444444333466
Q ss_pred CEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEec
Q 006203 315 DYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSI 379 (657)
Q Consensus 315 Df~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSL 379 (657)
..+.+|...... ++--+.|.++++.+++|++.+.+
T Consensus 117 ~gi~~~~~~~~~------------------------------~~~~~~~~~~~~~a~~~~~~i~~ 151 (275)
T cd01292 117 VGLKLAGPYTAT------------------------------GLSDESLRRVLEEARKLGLPVVI 151 (275)
T ss_pred eeEeeCCCCCCC------------------------------CCCcHHHHHHHHHHHHcCCeEEE
Confidence 666666532110 03356889999999999987764
No 284
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=24.81 E-value=70 Score=38.49 Aligned_cols=79 Identities=16% Similarity=0.164 Sum_probs=62.9
Q ss_pred cCccCCCCHHHHHHHHHHHHhcCCCEEEEeccc----cccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHH
Q 006203 291 DGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGV----LLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEI 366 (657)
Q Consensus 291 ~g~~~~lt~e~~~d~ieeQAeqGVDf~TIHaGv----~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~i 366 (657)
||+.--|+. -++.+++.-...|...+.||-|. .-+.+++...-+.++.++|||+| -..+.+| .+.++.+
T Consensus 398 GG~apGmNa-airavv~~a~~~g~~v~gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~L-----GT~R~~~-~~~~~~i 470 (762)
T cd00764 398 GAPAAGMNA-AVRSAVRYGLAHGHRPYAIYDGFEGLAKGQIVELGWIDVGGWTGRGGSEL-----GTKRTLP-KKDLETI 470 (762)
T ss_pred CCCchhHHH-HHHHHHHHHHHCCCEEEEEecCHHHhcCCCcccCCHHHHHHHHhCCcccc-----cccCCCc-HHHHHHH
Confidence 777777776 45777877778999999999986 34556677788999999999974 5666666 5899999
Q ss_pred HHHHhHhcee
Q 006203 367 LDICNQYDVA 376 (657)
Q Consensus 367 leI~k~YDVt 376 (657)
.+.+++|++.
T Consensus 471 ~~~l~~~~Id 480 (762)
T cd00764 471 AYNFQKYGID 480 (762)
T ss_pred HHHHHHcCCC
Confidence 9999999874
No 285
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.78 E-value=1.8e+02 Score=30.96 Aligned_cols=64 Identities=33% Similarity=0.385 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEE
Q 006203 240 VYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTI 319 (657)
Q Consensus 240 veKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGVDf~TI 319 (657)
++-+..|.++|||-||= ..-.++.+|+++-. .+ +.+|+.-. || +|. +.+.+-++-|||++.+
T Consensus 199 leea~eA~~~gaD~I~L--D~~~~e~l~~~v~~-~~---~~i~leAs----GG----It~----~ni~~~a~tGvD~Isv 260 (277)
T PRK05742 199 LDELRQALAAGADIVML--DELSLDDMREAVRL-TA---GRAKLEAS----GG----INE----STLRVIAETGVDYISI 260 (277)
T ss_pred HHHHHHHHHcCCCEEEE--CCCCHHHHHHHHHH-hC---CCCcEEEE----CC----CCH----HHHHHHHHcCCCEEEE
Confidence 33456688999999983 34467777776521 11 35665332 33 343 5566678999999987
Q ss_pred ec
Q 006203 320 HA 321 (657)
Q Consensus 320 Ha 321 (657)
=+
T Consensus 261 g~ 262 (277)
T PRK05742 261 GA 262 (277)
T ss_pred Ch
Confidence 44
No 286
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=24.49 E-value=81 Score=33.91 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEeccc
Q 006203 296 NLSWEVFRDTLIEQAEQGVDYFTIHAGV 323 (657)
Q Consensus 296 ~lt~e~~~d~ieeQAeqGVDf~TIHaGv 323 (657)
.++.++..+.+..-.+.||||++||.|.
T Consensus 223 G~~~~e~~~i~~~l~~~gvD~i~vs~g~ 250 (337)
T PRK13523 223 GLTVQDYVQYAKWMKEQGVDLIDVSSGA 250 (337)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 4788999998888888999999999994
No 287
>PRK06846 putative deaminase; Validated
Probab=24.43 E-value=5.2e+02 Score=27.93 Aligned_cols=40 Identities=20% Similarity=0.193 Sum_probs=26.6
Q ss_pred hhHHHHHHHHhHhceeEec----cCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeC
Q 006203 361 EHWDEILDICNQYDVALSI----GDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEG 421 (657)
Q Consensus 361 ~~FD~ileI~k~YDVtlSL----GDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEG 421 (657)
+.++++++.+++.+++++- |.|+=| ++..+++||.|-+=-
T Consensus 267 ~e~~~li~~la~~g~~v~~~~~~~~g~~p---------------------~~~l~~~Gv~v~lGt 310 (410)
T PRK06846 267 EEVEELAERLAAQGISITSTVPIGRLHMP---------------------IPLLHDKGVKVSLGT 310 (410)
T ss_pred HHHHHHHHHHHHcCCeEEEeCCCCCCCCC---------------------HHHHHhCCCeEEEec
Confidence 5667778889999977752 444321 566677888877643
No 288
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=24.33 E-value=1.9e+02 Score=30.38 Aligned_cols=29 Identities=31% Similarity=0.409 Sum_probs=24.1
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCEEEEecc
Q 006203 294 AENLSWEVFRDTLIEQAEQGVDYFTIHAG 322 (657)
Q Consensus 294 ~~~lt~e~~~d~ieeQAeqGVDf~TIHaG 322 (657)
-.+|+.|++.+.|.+-.+.|+..+++.=|
T Consensus 34 ~~~l~~e~~~~ii~~~~~~g~~~v~~~GG 62 (358)
T TIGR02109 34 KAELTTEEWTDVLTQAAELGVLQLHFSGG 62 (358)
T ss_pred cCCCCHHHHHHHHHHHHhcCCcEEEEeCc
Confidence 36799999999998888889988888654
No 289
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=24.19 E-value=1.4e+02 Score=31.89 Aligned_cols=78 Identities=22% Similarity=0.293 Sum_probs=54.4
Q ss_pred hhhHHHHHHH----HhHhceeEeccCCCCCCCccCCCcHHHHH-------------------------HHHHHHHHHHHH
Q 006203 360 YEHWDEILDI----CNQYDVALSIGDGLRPGSIYDANDTAQFA-------------------------ELLTQGELTRRA 410 (657)
Q Consensus 360 Y~~FD~ileI----~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~-------------------------EL~~LGEL~krA 410 (657)
..||++|+.. |.++.+.+-++=|+-|+||-|-.+. |+. |...+-+..+-|
T Consensus 45 ~~h~~rl~~~E~~Ra~~~Gl~~~vavGvHPr~iP~e~~~-~l~~L~~~l~~e~VvAiGEiGLe~~t~~E~evf~~QL~LA 123 (254)
T COG1099 45 LDHFRRLLGVEPERAEKAGLKLKVAVGVHPRAIPPELEE-VLEELEELLSNEDVVAIGEIGLEEATDEEKEVFREQLELA 123 (254)
T ss_pred HHHHHHHHccchhhHHhhCceeeEEeccCCCCCCchHHH-HHHHHHhhcccCCeeEeeecccccCCHHHHHHHHHHHHHH
Confidence 4678888766 8889999999999999998775333 444 444566677889
Q ss_pred HhcCCeEEeeCCCCCCCCchHHHHHHHHHhcC
Q 006203 411 WDKDVQVMNEGPGHIPMHKIPENMQKQLEWCN 442 (657)
Q Consensus 411 ~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~ 442 (657)
++.||.||| |-|=..=++-..+-.++|.
T Consensus 124 ~e~dvPviV----HTPr~nK~e~t~~ildi~~ 151 (254)
T COG1099 124 RELDVPVIV----HTPRRNKKEATSKILDILI 151 (254)
T ss_pred HHcCCcEEE----eCCCCcchhHHHHHHHHHH
Confidence 999999999 6664333334444555555
No 290
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=23.94 E-value=6.1e+02 Score=27.28 Aligned_cols=164 Identities=15% Similarity=0.171 Sum_probs=87.8
Q ss_pred hHHHHHHHHH-HHHhCCCEeeecCCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHH----
Q 006203 236 IEEEVYKVQW-ATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQA---- 310 (657)
Q Consensus 236 ie~EveKl~~-A~~~GADtvMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQA---- 310 (657)
.-+-++|+.. .-++|+-.++-|.-+|-.... .+. ....|++--++-.. ...+..+..||.+++-++++..+
T Consensus 76 ~i~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~--~~~-~~~~~~~ps~~~~~-~~~~~~p~~mt~~eI~~ii~~f~~aA~ 151 (353)
T cd04735 76 DIPGLRKLAQAIKSKGAKAILQIFHAGRMANP--ALV-PGGDVVSPSAIAAF-RPGAHTPRELTHEEIEDIIDAFGEATR 151 (353)
T ss_pred hhHHHHHHHHHHHhCCCeEEEEecCCCCCCCc--ccc-CCCceecCCCCccc-CCCCCCCccCCHHHHHHHHHHHHHHHH
Confidence 3455566544 446799999999887743110 000 11122222222100 01123467899999888877543
Q ss_pred ---hcCCCEEEEecc---ccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhH---hcee----E
Q 006203 311 ---EQGVDYFTIHAG---VLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQ---YDVA----L 377 (657)
Q Consensus 311 ---eqGVDf~TIHaG---v~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~---YDVt----l 377 (657)
+.|.|.+=||+| +.-+.+.-..++-+. .-|||+. ++-.|+.|-.+.|-+-+-. -|+. +
T Consensus 152 ~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D--~yGGsle-------nR~r~~~eii~~vr~~vg~~~~~~~~v~~R~ 222 (353)
T cd04735 152 RAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTD--EWGGSLE-------NRMRFPLAVVKAVQEVIDKHADKDFILGYRF 222 (353)
T ss_pred HHHHcCCCEEEEccccchHHHHhcCCccCCCCc--ccCCcHH-------HHHHHHHHHHHHHHHHhccccCCCceEEEEE
Confidence 479999999997 333444333444444 5799953 3334666666666655431 1332 3
Q ss_pred eccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCC
Q 006203 378 SIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPG 423 (657)
Q Consensus 378 SLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPG 423 (657)
|--|.+ +| ..+ .+|. -+++++..++||...-=+.|
T Consensus 223 s~~~~~-~~----g~~---~ee~---~~i~~~L~~~GvD~I~Vs~g 257 (353)
T cd04735 223 SPEEPE-EP----GIR---MEDT---LALVDKLADKGLDYLHISLW 257 (353)
T ss_pred Cccccc-CC----CCC---HHHH---HHHHHHHHHcCCCEEEeccC
Confidence 322222 22 112 3443 46667777889977654444
No 291
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=23.92 E-value=4.8e+02 Score=29.01 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=22.0
Q ss_pred HHHHHHHHHhCCCEeeecCCCCChHHHHHHHHhcC-CCc
Q 006203 240 VYKVQWATMWGADTVMDLSTGRHIHETREWILRNS-AVP 277 (657)
Q Consensus 240 veKl~~A~~~GADtvMDLSTGgdi~~~R~~Il~ns-pvP 277 (657)
.+.++.|.++|+.+|+ |..---...-|++=+||. .+|
T Consensus 149 ~~li~RA~~aG~~alv-lTvD~p~~g~R~~d~r~~~~~p 186 (367)
T TIGR02708 149 RDIMDRVKADGAKAIV-LTADATVGGNREVDVRNGFVFP 186 (367)
T ss_pred HHHHHHHHHcCCCEEE-EecCCCCCCcchhhhhcCCCCC
Confidence 4668889999999987 222222223466666664 344
No 292
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=23.60 E-value=80 Score=34.03 Aligned_cols=72 Identities=25% Similarity=0.370 Sum_probs=52.2
Q ss_pred HHHHHHH-hcCCCEEEEeccc----ccccccc-ccCcccCccccccHHHHHHHHHcCCcCchh---hhHHHHHHHHhHhc
Q 006203 304 DTLIEQA-EQGVDYFTIHAGV----LLRYIPL-TAKRMTGIVSRGGSIHAKWCLAYHKENFAY---EHWDEILDICNQYD 374 (657)
Q Consensus 304 d~ieeQA-eqGVDf~TIHaGv----~~~~v~~-~~~RvtgIVSRGGSi~a~Wml~h~~ENplY---~~FD~ileI~k~YD 374 (657)
-+++.-. ..|+..+.+|-|. ..+++++ ....+-++..+||++ +...+.+|+- +.+.++++.+++++
T Consensus 20 ~~v~~a~~~~g~~v~g~~~G~~GL~~~~~~~l~~~~~v~~~~~~GGt~-----LgtsR~~~~~~~~~~~~~~~~~l~~~~ 94 (324)
T TIGR02483 20 GVVRRAIAEYGWEVIGIRDGWRGLLEGDTVPLLDLEDVRGILPRGGTI-----LGSSRTNPFKYEEDGDDKIVANLKELG 94 (324)
T ss_pred HHHHHHHHcCCceEEEEccCHHHhCCCCeEecCCHHHHHHHHhCCCcc-----ccCCCCCccccCHHHHHHHHHHHHHcC
Confidence 3344333 3499999999886 4455666 677889999999996 4556666653 68999999999998
Q ss_pred ee--Eecc
Q 006203 375 VA--LSIG 380 (657)
Q Consensus 375 Vt--lSLG 380 (657)
+. +-+|
T Consensus 95 Id~LivIG 102 (324)
T TIGR02483 95 LDALIAIG 102 (324)
T ss_pred CCEEEEEC
Confidence 74 4444
No 293
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=23.58 E-value=2e+02 Score=28.71 Aligned_cols=160 Identities=18% Similarity=0.171 Sum_probs=90.8
Q ss_pred CCCHH-HHHHHHHHHHhcCCCEEEEeccccccccccccC---cccCcccc--ccHHHHHHHHHcCCcCchhhhHHHHHHH
Q 006203 296 NLSWE-VFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAK---RMTGIVSR--GGSIHAKWCLAYHKENFAYEHWDEILDI 369 (657)
Q Consensus 296 ~lt~e-~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~---RvtgIVSR--GGSi~a~Wml~h~~ENplY~~FD~ileI 369 (657)
++|.+ ++...+++..+-|++-+.++.|......+...+ ++.=||+= |++... ..+.+-- -..-++.++.
T Consensus 14 ~~~~~~~~~~~~~~a~~~~~~av~v~p~~~~~~~~~~~~~~~~~~~vi~fp~g~~~~~----~k~~~~~-~~~ve~A~~~ 88 (236)
T PF01791_consen 14 PMTGEEDIKKLCREAIEYGFDAVCVTPGYVKPAAELLAGSGVKVGLVIGFPFGTSTTE----PKGYDQI-VAEVEEAIRL 88 (236)
T ss_dssp THHHHHHHHHHHHHHHHHTSSEEEEEGGGHHHHHHHSTTSTSEEEEEESTTTSSSTHH----HHTCEEE-HHHHHHHHHT
T ss_pred CCCchhhHHHHHHHHHHhCCCEEEECHHHHHHHHHHhhccccccceEEEeCCCCCccc----cccccch-HHHHHHHHHc
Confidence 56666 999999999999999999999988777765444 44444431 222111 0100000 1222333333
Q ss_pred -HhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccc
Q 006203 370 -CNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYT 448 (657)
Q Consensus 370 -~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYv 448 (657)
+.+-|+++.+|- + .+.+ .-..+..+.++++.|+++|+.||+|+ .|
T Consensus 89 GAd~vd~vi~~~~-~-----~~~~---~~~~~~~i~~v~~~~~~~gl~vIlE~---~l---------------------- 134 (236)
T PF01791_consen 89 GADEVDVVINYGA-L-----GSGN---EDEVIEEIAAVVEECHKYGLKVILEP---YL---------------------- 134 (236)
T ss_dssp T-SEEEEEEEHHH-H-----HTTH---HHHHHHHHHHHHHHHHTSEEEEEEEE---CE----------------------
T ss_pred CCceeeeeccccc-c-----cccc---HHHHHHHHHHHHHHHhcCCcEEEEEE---ec----------------------
Confidence 456788888853 1 1122 33444556678888889999999993 12
Q ss_pred cCccccccCCCchhHHHhHHHHHhhhcccceeeecCchhhcCCCChhHHHH
Q 006203 449 LGPLTTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKA 499 (657)
Q Consensus 449 LGPLvTDIApGYDHITsAIGaA~aa~~GadfLCYVTPaEHLgLP~~eDVke 499 (657)
.|+-+.|=. --|=|..|. -+++-+||||+=--||+. .-.+.+||+.
T Consensus 135 ~~~~~~~~~-~~~~I~~a~--ria~e~GaD~vKt~tg~~--~~~t~~~~~~ 180 (236)
T PF01791_consen 135 RGEEVADEK-KPDLIARAA--RIAAELGADFVKTSTGKP--VGATPEDVEL 180 (236)
T ss_dssp CHHHBSSTT-HHHHHHHHH--HHHHHTT-SEEEEE-SSS--SCSHHHHHHH
T ss_pred Cchhhcccc-cHHHHHHHH--HHHHHhCCCEEEecCCcc--ccccHHHHHH
Confidence 111111111 112344443 345669999999999966 4556666553
No 294
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=23.57 E-value=81 Score=32.16 Aligned_cols=35 Identities=34% Similarity=0.509 Sum_probs=27.8
Q ss_pred HHHHHHHHhHhceeEecc-CCCCCCCccCCCcHHHH
Q 006203 363 WDEILDICNQYDVALSIG-DGLRPGSIYDANDTAQF 397 (657)
Q Consensus 363 FD~ileI~k~YDVtlSLG-DGLRPG~i~DA~D~AQ~ 397 (657)
..+++..++++++.|+|| |+-+|+-+.+-...+++
T Consensus 175 ~~~~~~~~~e~G~~~~i~tDaH~~~~lg~~~~~~~~ 210 (237)
T COG1387 175 NSEILRLARELGVKLAIGTDAHRPGDLGDMYFGVKI 210 (237)
T ss_pred hHHHHHHHHHhCCeEEeecCcCChhhcccchHHHHH
Confidence 457999999999999998 67777777776666543
No 295
>COG4197 Uncharacterized protein conserved in bacteria, prophage-related [Function unknown]
Probab=23.48 E-value=97 Score=28.87 Aligned_cols=54 Identities=26% Similarity=0.467 Sum_probs=41.7
Q ss_pred CCCCchhhhhhhhcCCCcccHHHHHHcCCCCHHHHHHHHHcCCCHHHHHHHHhcceEE
Q 006203 143 PKLRKDWIDRREKLGAPRYTQMYYAKQGVITEEMLYCATREKLDPEFVRAEVARGRAI 200 (657)
Q Consensus 143 p~lR~~Wi~~R~d~~~~~mTQm~~Ar~GiIT~EMe~VA~~E~i~pE~vR~~VA~Gr~V 200 (657)
|+.-.+|+.-|....-....-++.|-.|.||+|= .|--|++|++|+.+..|.+-
T Consensus 26 p~~vnQw~~g~r~~~a~r~~aIerAt~g~Vs~~e----lrp~i~w~~~~~~~~~~q~~ 79 (96)
T COG4197 26 PPSVNQWIKGRRQVAAERALAIERATSGQVSREE----LRPDIDWEYLRRSECAGQNM 79 (96)
T ss_pred chHHHHHhhheeecCcccchHHHHHhcCCccHHH----HcccCCHHHHHHHHhhccch
Confidence 5556789988776655556779999999999863 23379999999999998753
No 296
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=23.48 E-value=81 Score=34.03 Aligned_cols=58 Identities=21% Similarity=0.205 Sum_probs=39.0
Q ss_pred HHHHHHHHHhCCCEeeec----------------CCCCChHHHHHHHHhcCCCccccchhhhHHHHhcCccCCCCHHHHH
Q 006203 240 VYKVQWATMWGADTVMDL----------------STGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFR 303 (657)
Q Consensus 240 veKl~~A~~~GADtvMDL----------------STGgdi~~~R~~Il~nspvPVGTVPIYqA~~k~~g~~~~lt~e~~~ 303 (657)
++.++.|.++||-+||=| ++-.||.+||+.+ .+| |---+ | ..++
T Consensus 18 ~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~V----~iP-----VIGi~-K----------~~~~ 77 (283)
T cd04727 18 AEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDAV----SIP-----VMAKV-R----------IGHF 77 (283)
T ss_pred HHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHhC----CCC-----eEEee-e----------hhHH
Confidence 578999999999999985 3445666666543 344 32111 1 2226
Q ss_pred HHHHHHHhcCCCEE
Q 006203 304 DTLIEQAEQGVDYF 317 (657)
Q Consensus 304 d~ieeQAeqGVDf~ 317 (657)
..+..-.+.|||++
T Consensus 78 ~Ea~~L~eaGvDiI 91 (283)
T cd04727 78 VEAQILEALGVDMI 91 (283)
T ss_pred HHHHHHHHcCCCEE
Confidence 66777789999998
No 297
>PLN02795 allantoinase
Probab=23.48 E-value=1.5e+02 Score=33.46 Aligned_cols=101 Identities=16% Similarity=0.124 Sum_probs=56.5
Q ss_pred hhHHHHHHHHhHhceeEecc--C--------CCCCC--CccC-CCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCC
Q 006203 361 EHWDEILDICNQYDVALSIG--D--------GLRPG--SIYD-ANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPM 427 (657)
Q Consensus 361 ~~FD~ileI~k~YDVtlSLG--D--------GLRPG--~i~D-A~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl 427 (657)
..+.++++.+++||+.+.+= | .+..| .... ..-+..++|...+..+...|++.|.|=-+
T Consensus 212 ~~l~~~~~~a~~~g~~v~iH~E~~~l~~~~~~~~~~~~~~~~~~~~rP~~aE~~ai~~~~~la~~~~~~~~~-------- 283 (505)
T PLN02795 212 THIKAALPVLAKYGRPLLVHAEVVSPVESDSRLDADPRSYSTYLKSRPPSWEQEAIRQLLEVAKDTRPGGVA-------- 283 (505)
T ss_pred HHHHHHHHHHHHhCCEEEEecCChhHhhhhhhhhcCCcChhHhcccCCHHHHHHHHHHHHHHHHHhhhcccC--------
Confidence 56788888888888777541 0 00000 0000 01134566777777777777766444222
Q ss_pred CchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHh-HHHHHhhh---cccceeeecCchhhcCCCChhHH
Q 006203 428 HKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSA-IGAANIGA---LGTALLCYVTPKEHLGLPNRDDV 497 (657)
Q Consensus 428 ~~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGYDHITsA-IGaA~aa~---~GadfLCYVTPaEHLgLP~~eDV 497 (657)
|..--.--||+++ -+--++.. .|..+-|=||| -||-|- .+|+
T Consensus 284 --------------------------~g~~lhi~HiSt~~~~~e~i~~ak~~G~~Vt~Ev~p-h~L~l~-~~~~ 329 (505)
T PLN02795 284 --------------------------EGAHVHIVHLSDAESSLELIKEAKAKGDSVTVETCP-HYLAFS-AEEI 329 (505)
T ss_pred --------------------------CCCCEEEEECCChHHHHHHHHHHHHCCCcEEEEeCh-hhhccc-HHHc
Confidence 2222245677777 55544443 38888899998 788664 4454
No 298
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=23.45 E-value=2.6e+02 Score=28.59 Aligned_cols=83 Identities=17% Similarity=0.184 Sum_probs=60.7
Q ss_pred eeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCC-eEEe-eCC---CCCCCCchHHHHHHHHHhcCCCCcccc
Q 006203 375 VALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDV-QVMN-EGP---GHIPMHKIPENMQKQLEWCNEAPFYTL 449 (657)
Q Consensus 375 VtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gV-QVMI-EGP---GHVPl~~I~~Nv~lqk~lC~~APfYvL 449 (657)
|++|+|..-+.|... ++.+. -..||.+-|+..|| .+.. -.| -.++.+++...+....+-+. |=.|+
T Consensus 44 ~~lT~Ge~g~~~~~~------~l~~~-R~~E~~~a~~~LGv~~~~~l~~~~~~~~~~~~~~~~~L~~ii~~~~--P~~V~ 114 (237)
T COG2120 44 VCLTLGEAGENGGEL------ELGAV-RRAEARAAARVLGVRETIFLGFPDTGADADPEEITGALVAIIRRLR--PDVVF 114 (237)
T ss_pred EEccCCcccccCCcc------chHHH-HHHHHHHHHHhcCCCcceecCCCccccccChHHHHHHHHHHHHHhC--CCEEE
Confidence 678999988888766 44443 46899999999999 3333 234 45788888887877777666 66666
Q ss_pred CccccccCCCchhHHHh
Q 006203 450 GPLTTDIAPGYDHITSA 466 (657)
Q Consensus 450 GPLvTDIApGYDHITsA 466 (657)
=|-.-|..++.||+...
T Consensus 115 t~~~~d~~~HpDH~~~~ 131 (237)
T COG2120 115 TPYPDDGYGHPDHRATH 131 (237)
T ss_pred ecCCCCCCCCCChHHHH
Confidence 66666668899999865
No 299
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=23.40 E-value=68 Score=38.59 Aligned_cols=117 Identities=18% Similarity=0.150 Sum_probs=80.3
Q ss_pred cCccCCCCHHHHHHHHHHHHhcCCCEEEEeccc---cc---cccccccCcccCccccccHHHHHHHHHcCCcCchh--hh
Q 006203 291 DGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGV---LL---RYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAY--EH 362 (657)
Q Consensus 291 ~g~~~~lt~e~~~d~ieeQAeqGVDf~TIHaGv---~~---~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY--~~ 362 (657)
||+.--|+. -++.+++.-...|...+.||-|. .. +..++...-+-+|-++||++|- ..+-+|+. +.
T Consensus 12 GGdapGmNa-aIravvr~a~~~g~~V~gi~~Gy~GL~~g~~~i~~l~~~~V~~i~~~GGT~LG-----TsR~~~f~~~e~ 85 (762)
T cd00764 12 GGDAQGMNA-AVRAVVRMGIYVGAKVFFVYEGYEGLVKGGDYIKQAEWESVSNWLQEGGTIIG-----SARCKEFREREG 85 (762)
T ss_pred CCCchhHhH-HHHHHHHHHHHCCCEEEEEecCHHHHhCCCCCceeCCHHHHHHHHhCCCCccc-----CCCCCcccCHHH
Confidence 455445543 34556666667899999999876 22 3445566788999999999764 45666654 47
Q ss_pred HHHHHHHHhHhcee--Eec-cCCCCCCCccCCCcHHH---------HHHHHHHHHHHHHHHhcCCeEEeeC
Q 006203 363 WDEILDICNQYDVA--LSI-GDGLRPGSIYDANDTAQ---------FAELLTQGELTRRAWDKDVQVMNEG 421 (657)
Q Consensus 363 FD~ileI~k~YDVt--lSL-GDGLRPG~i~DA~D~AQ---------~~EL~~LGEL~krA~e~gVQVMIEG 421 (657)
+..+++.+++|++. +-+ || |+.+.|+ ++||...|+|++.+.+.+-.+-|=|
T Consensus 86 ~~~a~~~L~~~~Id~LvvIGGd--------gSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVG 148 (762)
T cd00764 86 RLQAAYNLIQRGITNLCVIGGD--------GSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVG 148 (762)
T ss_pred HHHHHHHHHHcCCCEEEEeCCc--------hHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEE
Confidence 88999999999874 333 44 3444443 4788999999999988865544444
No 300
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=23.40 E-value=68 Score=33.74 Aligned_cols=78 Identities=22% Similarity=0.293 Sum_probs=49.7
Q ss_pred ceeEeeccccCCCCCC--hHHHHHHHHHHHHhCCCEeeecCC---------CCChHHHHHHHH--hcCCCccccchhhhH
Q 006203 220 LVKVNANIGNSAVASS--IEEEVYKVQWATMWGADTVMDLST---------GRHIHETREWIL--RNSAVPVGTVPIYQA 286 (657)
Q Consensus 220 ~tKVNANIGtS~~~~~--ie~EveKl~~A~~~GADtvMDLST---------Ggdi~~~R~~Il--~nspvPVGTVPIYqA 286 (657)
++++|+.+|-|-..-. .++++ |.+-| .||-..+|+.+- +...|-||-=|=|.-
T Consensus 1 ~IdlN~DlGE~~g~~~~g~D~~l--------------mp~I~saNIACG~HAGDp~~M~~tv~lA~~~gV~iGAHPsyPD 66 (242)
T PF03746_consen 1 KIDLNCDLGEGFGAWSMGDDEAL--------------MPYISSANIACGFHAGDPETMRRTVRLAKEHGVAIGAHPSYPD 66 (242)
T ss_dssp EEEEEEEESSSBTTB--S-HHHH--------------TTT-SEEEEE-SSSS--HHHHHHHHHHHHHTT-EEEEE---S-
T ss_pred CeeeeeecCCCCCCCCCCCHHHH--------------HHHhhhHHHhhcccccCHHHHHHHHHHHHHcCCEeccCCCCCC
Confidence 5789999999886433 34444 55544 468888999875 566899999999999
Q ss_pred HHHhcCccCCCCHHHHHHHHHHHHh
Q 006203 287 LEKVDGIAENLSWEVFRDTLIEQAE 311 (657)
Q Consensus 287 ~~k~~g~~~~lt~e~~~d~ieeQAe 311 (657)
++-.|+...+|+.+++.+.|..|..
T Consensus 67 ~~gFGRr~m~~s~~el~~~v~yQig 91 (242)
T PF03746_consen 67 REGFGRRSMDISPEELRDSVLYQIG 91 (242)
T ss_dssp TTTTT-S-----HHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 8888888899999999999999975
No 301
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=23.23 E-value=1.6e+02 Score=31.28 Aligned_cols=121 Identities=11% Similarity=0.098 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccccc--cccc---cccCccc-Cc---c------ccccHH-HHHHHHHcCC---cCc
Q 006203 298 SWEVFRDTLIEQAEQGVDYFTIHAGVLL--RYIP---LTAKRMT-GI---V------SRGGSI-HAKWCLAYHK---ENF 358 (657)
Q Consensus 298 t~e~~~d~ieeQAeqGVDf~TIHaGv~~--~~v~---~~~~Rvt-gI---V------SRGGSi-~a~Wml~h~~---ENp 358 (657)
+.+.+.+.+.+..++|..-|-|+.|..- +-++ ...+.+- ++ | |.--++ +++.+...+- |-|
T Consensus 141 ~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~d~~~v~air~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iEeP 220 (355)
T cd03321 141 GAKLATERAVTAAEEGFHAVKTKIGYPTADEDLAVVRSIRQAVGDGVGLMVDYNQSLTVPEAIERGQALDQEGLTWIEEP 220 (355)
T ss_pred hHHHHHHHHHHHHHhhhHHHhhhcCCCChHhHHHHHHHHHHhhCCCCEEEEeCCCCcCHHHHHHHHHHHHcCCCCEEECC
Confidence 3566777777777888888888876421 1111 1111110 00 0 111111 1223332222 455
Q ss_pred hh-hhHHHHHHHHhHhceeEeccCCCCC---------CCccCC--CcHHHHHHHHHHHHHHHHHHhcCCeEE
Q 006203 359 AY-EHWDEILDICNQYDVALSIGDGLRP---------GSIYDA--NDTAQFAELLTQGELTRRAWDKDVQVM 418 (657)
Q Consensus 359 lY-~~FD~ileI~k~YDVtlSLGDGLRP---------G~i~DA--~D~AQ~~EL~~LGEL~krA~e~gVQVM 418 (657)
+- ..+|.+-++.++.+|-+.+|..+.- ....|. -|...+.-+...-++++.|+++|+.+|
T Consensus 221 ~~~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~~A~~~gi~~~ 292 (355)
T cd03321 221 TLQHDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRASALAEQAGIPMS 292 (355)
T ss_pred CCCcCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHHHHHHHcCCeec
Confidence 53 4688888999999999999987731 001111 122333334444478899999999987
No 302
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=23.13 E-value=3.9e+02 Score=27.23 Aligned_cols=78 Identities=15% Similarity=-0.008 Sum_probs=40.9
Q ss_pred HHHHHHHHhCCCEeeecCCC--CChHHHHHHHHhcCC--CccccchhhhH--------HHHhcCccCCCCHHHHHHHHHH
Q 006203 241 YKVQWATMWGADTVMDLSTG--RHIHETREWILRNSA--VPVGTVPIYQA--------LEKVDGIAENLSWEVFRDTLIE 308 (657)
Q Consensus 241 eKl~~A~~~GADtvMDLSTG--gdi~~~R~~Il~nsp--vPVGTVPIYqA--------~~k~~g~~~~lt~e~~~d~iee 308 (657)
+.++.++.+|||.|+ +.|. .|.+.++++ .+..+ --+=.+.+|+- -.+..|-.+ -+.++..+.+.+
T Consensus 87 ~d~~~~~~~Ga~~vi-vgt~~~~~p~~~~~~-~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~-~~~~~~~~~~~~ 163 (254)
T TIGR00735 87 EDVDKLLRAGADKVS-INTAAVKNPELIYEL-ADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRE-STGLDAVEWAKE 163 (254)
T ss_pred HHHHHHHHcCCCEEE-EChhHhhChHHHHHH-HHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcc-cCCCCHHHHHHH
Confidence 444555667999875 4433 465555553 33321 11223333321 001112111 234455677777
Q ss_pred HHhcCCCEEEEec
Q 006203 309 QAEQGVDYFTIHA 321 (657)
Q Consensus 309 QAeqGVDf~TIHa 321 (657)
-.+.|+|++.+|.
T Consensus 164 l~~~G~~~iivt~ 176 (254)
T TIGR00735 164 VEKLGAGEILLTS 176 (254)
T ss_pred HHHcCCCEEEEeC
Confidence 7899999999996
No 303
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=23.03 E-value=2.4e+02 Score=30.00 Aligned_cols=90 Identities=20% Similarity=0.182 Sum_probs=59.7
Q ss_pred hceeEeccCCCCCCCcc-CCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCc--hHHHHHHHHHhcCCCC----
Q 006203 373 YDVALSIGDGLRPGSIY-DANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHK--IPENMQKQLEWCNEAP---- 445 (657)
Q Consensus 373 YDVtlSLGDGLRPG~i~-DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~--I~~Nv~lqk~lC~~AP---- 445 (657)
-+|.||+|-.-= +.+. ...++.+|..-. .++.++-.=.||..=||||+ +-++ +...++.-|.|-.+.|
T Consensus 68 ~kViiS~GG~~g-~~~~~~~~~~~~~~~a~--~~~i~~y~~dgiDfDiE~~~--~~d~~~~~~~~~al~~Lq~~~p~l~v 142 (294)
T cd06543 68 GDVIVSFGGASG-TPLATSCTSADQLAAAY--QKVIDAYGLTHLDFDIEGGA--LTDTAAIDRRAQALALLQKEYPDLKI 142 (294)
T ss_pred CeEEEEecCCCC-CccccCcccHHHHHHHH--HHHHHHhCCCeEEEeccCCc--cccchhHHHHHHHHHHHHHHCCCcEE
Confidence 589999995321 2222 567888887655 45777777789999999997 5554 5555555555555545
Q ss_pred ccccCccccccC-CCchhHHHhH
Q 006203 446 FYTLGPLTTDIA-PGYDHITSAI 467 (657)
Q Consensus 446 fYvLGPLvTDIA-pGYDHITsAI 467 (657)
-|+|+-+++-.. .||+-+..|.
T Consensus 143 s~Tlp~~p~gl~~~g~~~l~~a~ 165 (294)
T cd06543 143 SFTLPVLPTGLTPDGLNVLEAAA 165 (294)
T ss_pred EEecCCCCCCCChhHHHHHHHHH
Confidence 367776666666 5777666664
No 304
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=23.01 E-value=6.2e+02 Score=25.42 Aligned_cols=101 Identities=11% Similarity=0.107 Sum_probs=60.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhc
Q 006203 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYD 374 (657)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YD 374 (657)
.++++++.++.+ ++.|.|++=+..+-. ..++ ..-+..-+.+++|.+.+++|+
T Consensus 19 ~~~~~~e~~~~~---~~~G~~~iEl~~~~~-------~~~~------------------~~~~~~~~~~~~l~~~l~~~g 70 (283)
T PRK13209 19 AGECWLEKLAIA---KTAGFDFVEMSVDES-------DERL------------------ARLDWSREQRLALVNALVETG 70 (283)
T ss_pred CCCCHHHHHHHH---HHcCCCeEEEecCcc-------ccch------------------hccCCCHHHHHHHHHHHHHcC
Confidence 467888777777 567888877643200 0000 001223457999999999999
Q ss_pred eeEecc--CCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCC
Q 006203 375 VALSIG--DGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPG 423 (657)
Q Consensus 375 VtlSLG--DGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPG 423 (657)
+.++-. .+-.+-.....+++..=..+..+-+..+.|.+.|+.+++=+++
T Consensus 71 l~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~~ 121 (283)
T PRK13209 71 FRVNSMCLSAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLAGY 121 (283)
T ss_pred CceeEEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCc
Confidence 998632 1111112222333333334666778899999999999975443
No 305
>PF07503 zf-HYPF: HypF finger; InterPro: IPR011125 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Proteins of the HypF family are involved in the maturation and regulation of hydrogenase []. In the N terminus they appear to have two zinc finger domains that are similar to those found in the DnaJ chaperone []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A.
Probab=22.71 E-value=36 Score=26.09 Aligned_cols=21 Identities=38% Similarity=0.928 Sum_probs=11.4
Q ss_pred ChHHHHhhhhccCCCCCCCCCCcccCCCCCc
Q 006203 545 DPMTAMSFHDETLPSEGAKVAHFCSMCGPKF 575 (657)
Q Consensus 545 DPe~Ar~~~~e~~p~~~~k~~~~CSMCGp~f 575 (657)
||.. |+||-+. -.|+-|||.+
T Consensus 11 ~p~~-RR~~~~~---------isC~~CGPr~ 31 (35)
T PF07503_consen 11 DPSN-RRFHYQF---------ISCTNCGPRY 31 (35)
T ss_dssp STTS-TTTT-TT-----------BTTCC-SC
T ss_pred CCCC-CcccCcC---------ccCCCCCCCE
Confidence 4443 5666554 3699999965
No 306
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=22.70 E-value=4.5e+02 Score=23.80 Aligned_cols=72 Identities=22% Similarity=0.218 Sum_probs=40.5
Q ss_pred hHHHHHHHHhHhc-eeEecc--CCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCC---CCchHHHHH
Q 006203 362 HWDEILDICNQYD-VALSIG--DGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIP---MHKIPENMQ 435 (657)
Q Consensus 362 ~FD~ileI~k~YD-VtlSLG--DGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVP---l~~I~~Nv~ 435 (657)
++++.+.-. +.| |+|.+| |.++ + .+..++.+ .+-+|+++++++|.+|++=++-.-| -..++...+
T Consensus 55 ~l~~~~~~~-~pd~v~i~~G~ND~~~-~-----~~~~~~~~--~l~~li~~~~~~~~~vil~~~~~~~~~~~~~~~~~~~ 125 (177)
T cd01822 55 RLPALLAQH-KPDLVILELGGNDGLR-G-----IPPDQTRA--NLRQMIETAQARGAPVLLVGMQAPPNYGPRYTRRFAA 125 (177)
T ss_pred HHHHHHHhc-CCCEEEEeccCccccc-C-----CCHHHHHH--HHHHHHHHHHHCCCeEEEEecCCCCccchHHHHHHHH
Confidence 455554432 455 667777 2221 1 23445543 4678888999999999988752111 112444455
Q ss_pred HHHHhcC
Q 006203 436 KQLEWCN 442 (657)
Q Consensus 436 lqk~lC~ 442 (657)
..+++|.
T Consensus 126 ~~~~~a~ 132 (177)
T cd01822 126 IYPELAE 132 (177)
T ss_pred HHHHHHH
Confidence 5556664
No 307
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=22.65 E-value=72 Score=38.22 Aligned_cols=79 Identities=19% Similarity=0.136 Sum_probs=59.7
Q ss_pred cCccCCCCHHHHHHHHHHHHhcCCCEEEEeccc----cccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHH
Q 006203 291 DGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGV----LLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEI 366 (657)
Q Consensus 291 ~g~~~~lt~e~~~d~ieeQAeqGVDf~TIHaGv----~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~i 366 (657)
||..--|+. .++-+++.-...|...+.||-|. .-+..++....+-++.++||++| -..+-+| .+.+..+
T Consensus 398 GG~apGmNa-air~vv~~a~~~g~~V~Gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~L-----gtsR~~~-~~~~~~i 470 (745)
T TIGR02478 398 GAPAGGMNA-ATRSAVRYAIARGHTVIAIHNGFSGLARGDVRELTWSDVEGWVGEGGSEL-----GTNRELP-GKDLGMI 470 (745)
T ss_pred CCCchhHHH-HHHHHHHHHHhCCCEEEEEecChhhhccCCeecCCHHHHHHHHhcCCccc-----ccCCCCc-hhHHHHH
Confidence 566555654 34566666667899999999987 34455566678999999999976 4556666 7789999
Q ss_pred HHHHhHhcee
Q 006203 367 LDICNQYDVA 376 (657)
Q Consensus 367 leI~k~YDVt 376 (657)
++.+++|++-
T Consensus 471 ~~~l~~~~Id 480 (745)
T TIGR02478 471 AYYFQKHKID 480 (745)
T ss_pred HHHHHHcCCC
Confidence 9999999874
No 308
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=22.62 E-value=3.2e+02 Score=31.25 Aligned_cols=178 Identities=14% Similarity=0.132 Sum_probs=98.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHh-
Q 006203 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQY- 373 (657)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~Y- 373 (657)
..|+.|++.+.++.-.+.|+.=+.|..|......+ .+++-++++.++++
T Consensus 113 ~~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p~~~~------------------------------~eyi~e~i~~I~~~~ 162 (469)
T PRK09613 113 KKLTQEEIREEVKALEDMGHKRLALVAGEDPPNCD------------------------------IEYILESIKTIYSTK 162 (469)
T ss_pred eECCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCC------------------------------HHHHHHHHHHHHHhc
Confidence 35899999999999999999999988885533111 33444444445553
Q ss_pred -------ceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeE----------------EeeCCCCCCCCch
Q 006203 374 -------DVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQV----------------MNEGPGHIPMHKI 430 (657)
Q Consensus 374 -------DVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQV----------------MIEGPGHVPl~~I 430 (657)
.|++++|. .+..|+.+|...| |.. --.||.|-+-..+
T Consensus 163 ~~~g~i~~v~inig~----------lt~eey~~LkeaG----------v~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl 222 (469)
T PRK09613 163 HGNGEIRRVNVNIAP----------TTVENYKKLKEAG----------IGTYQLFQETYHKPTYEKMHPSGPKSDYDWRL 222 (469)
T ss_pred cccCcceeeEEEeec----------CCHHHHHHHHHcC----------CCEEEeccccCCHHHHHhcCCCCCCCCHHHHH
Confidence 47888773 6777888886544 322 1246666665555
Q ss_pred HHHHHHHH----HhcCCCCccccCccccccCCCchhHHHhHHHH-Hhhhcc--cceee--ecCchhhc------CCCChh
Q 006203 431 PENMQKQL----EWCNEAPFYTLGPLTTDIAPGYDHITSAIGAA-NIGALG--TALLC--YVTPKEHL------GLPNRD 495 (657)
Q Consensus 431 ~~Nv~lqk----~lC~~APfYvLGPLvTDIApGYDHITsAIGaA-~aa~~G--adfLC--YVTPaEHL------gLP~~e 495 (657)
++-=..++ .+|-|+ ++=||.- =||.+..+.=+. +-..+| .+.+= -.-|++.- ..-+.+
T Consensus 223 ~t~~rA~~aGi~~Vg~G~-L~GLge~------~~E~~~l~~hl~~L~~~~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~ 295 (469)
T PRK09613 223 TAMDRAMEAGIDDVGIGV-LFGLYDY------KFEVLGLLMHAEHLEERFGVGPHTISVPRLRPADGSDLENFPYLVSDE 295 (469)
T ss_pred HHHHHHHHcCCCeeCeEE-EEcCCCC------HHHHHHHHHHHHHHHHhhCCCCccccccceecCCCCCcccCCCCCCHH
Confidence 43222222 144444 1122221 124443321110 111223 22110 12333332 123677
Q ss_pred HHHHHHHHHHHHHhHhhhh-cCCcchhhHHHHHHH
Q 006203 496 DVKAGVIAYKIAAHAADLA-KGHPLAQTWDDALSK 529 (657)
Q Consensus 496 DVkeGViA~kIAAHaaDla-Kg~p~A~~rD~~mSk 529 (657)
+...=|-++||+---+.|. -++..+.-||..|.-
T Consensus 296 e~lriiA~~RL~~P~~~I~lStRE~~~~r~~~~~~ 330 (469)
T PRK09613 296 DFKKIVAILRLAVPYTGMILSTRESAELRREVLEL 330 (469)
T ss_pred HHHHHHHHHHHHCCCCCceeecCCCHHHHHHHHhh
Confidence 8899999999998866654 256677788876543
No 309
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=22.58 E-value=2e+02 Score=31.22 Aligned_cols=189 Identities=20% Similarity=0.273 Sum_probs=107.5
Q ss_pred eccccCCCCCChHHHHHHHHHHHHhC-CCEe-eecCCCC------------ChHHHHHHHHhcCCCccccchhhhHHHHh
Q 006203 225 ANIGNSAVASSIEEEVYKVQWATMWG-ADTV-MDLSTGR------------HIHETREWILRNSAVPVGTVPIYQALEKV 290 (657)
Q Consensus 225 ANIGtS~~~~~ie~EveKl~~A~~~G-ADtv-MDLSTGg------------di~~~R~~Il~nspvPVGTVPIYqA~~k~ 290 (657)
.|||.|...++.++..+=+....+.| ||.| ..+|.-- -++++-+++-+.+.+|| |
T Consensus 97 ~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~~~Pv-----~------ 165 (310)
T COG0167 97 VNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAATKVPV-----F------ 165 (310)
T ss_pred cceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcccCce-----E------
Confidence 48888888888888888888888999 7876 4566421 24455566666666444 2
Q ss_pred cCccCCC--CHHHHHHHHHHHHhcCCCEEEEecccc-ccccccccCcccCcccccc---HHHHHHHHHcCCcCchhhhHH
Q 006203 291 DGIAENL--SWEVFRDTLIEQAEQGVDYFTIHAGVL-LRYIPLTAKRMTGIVSRGG---SIHAKWCLAYHKENFAYEHWD 364 (657)
Q Consensus 291 ~g~~~~l--t~e~~~d~ieeQAeqGVDf~TIHaGv~-~~~v~~~~~RvtgIVSRGG---Si~a~Wml~h~~ENplY~~FD 364 (657)
.+| ++++|.+....--+.|.|.++.=--+. +..+.........=-..|| .-+..- -.-
T Consensus 166 ----vKl~P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~------------al~ 229 (310)
T COG0167 166 ----VKLAPNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPI------------ALR 229 (310)
T ss_pred ----EEeCCCHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHH------------HHH
Confidence 233 689999999999999999998755433 2223322211111111222 111110 011
Q ss_pred HHHHHHhHhc--eeEeccCCCCCCCccCCCcHHHHHHHHHHH-HHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhc
Q 006203 365 EILDICNQYD--VALSIGDGLRPGSIYDANDTAQFAELLTQG-ELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWC 441 (657)
Q Consensus 365 ~ileI~k~YD--VtlSLGDGLRPG~i~DA~D~AQ~~EL~~LG-EL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC 441 (657)
-|-++.++.+ +-|. =-|-|.++.|+. |.+..| .+++ -+--.|-+||+++. +|...+....+
T Consensus 230 ~v~~l~~~~~~~ipII-----GvGGI~s~~DA~---E~i~aGA~~vQ----v~Tal~~~Gp~i~~--~I~~~l~~~l~-- 293 (310)
T COG0167 230 VVAELYKRLGGDIPII-----GVGGIETGEDAL---EFILAGASAVQ----VGTALIYKGPGIVK--EIIKGLARWLE-- 293 (310)
T ss_pred HHHHHHHhcCCCCcEE-----EecCcCcHHHHH---HHHHcCCchhe----eeeeeeeeCchHHH--HHHHHHHHHHH--
Confidence 1223333333 3332 146777777763 333332 3322 12224889999874 55555554443
Q ss_pred CCCCccccCccccccCCCchhHHHhHHHHH
Q 006203 442 NEAPFYTLGPLTTDIAPGYDHITSAIGAAN 471 (657)
Q Consensus 442 ~~APfYvLGPLvTDIApGYDHITsAIGaA~ 471 (657)
.-||+||.=+||.+.
T Consensus 294 ---------------~~g~~si~d~iG~~~ 308 (310)
T COG0167 294 ---------------EKGFESIQDIIGSAL 308 (310)
T ss_pred ---------------HcCCCCHHHHhchhc
Confidence 347888888888764
No 310
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=22.55 E-value=8e+02 Score=24.71 Aligned_cols=66 Identities=11% Similarity=0.098 Sum_probs=50.2
Q ss_pred hhHHHHHHHHhHh-ceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCC
Q 006203 361 EHWDEILDICNQY-DVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPM 427 (657)
Q Consensus 361 ~~FD~ileI~k~Y-DVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl 427 (657)
+.++++.+.+++| .+.+|+--.+ ++...+.+....-..+..+-...+.|.+.|+..++=-||+.+-
T Consensus 45 ~~~~~l~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~ 111 (279)
T cd00019 45 ERAEKFKAIAEEGPSICLSVHAPY-LINLASPDKEKREKSIERLKDEIERCEELGIRLLVFHPGSYLG 111 (279)
T ss_pred HHHHHHHHHHHHcCCCcEEEEcCc-eeccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCC
Confidence 6799999999999 8888764332 2334444434456668888999999999999999988998774
No 311
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=22.50 E-value=90 Score=33.59 Aligned_cols=74 Identities=18% Similarity=0.309 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcCCCEEEEeccc----cccccccccCcccCccccccHHHHHHHHHcCCcCchh--hhHHHHHHHHhHhce
Q 006203 302 FRDTLIEQAEQGVDYFTIHAGV----LLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAY--EHWDEILDICNQYDV 375 (657)
Q Consensus 302 ~~d~ieeQAeqGVDf~TIHaGv----~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY--~~FD~ileI~k~YDV 375 (657)
++.+++.-...|+..+.+|-|. +-+.++++...+.+|..+||++|- ..+-+++. +.+..+++.++++++
T Consensus 19 i~~vv~~a~~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~Lg-----tsR~~~~~~~~~~~~~~~~l~~~~I 93 (317)
T cd00763 19 IRGVVRSAIAEGLEVYGIRDGYAGLIAGDIVPLDRYSVSDIINRGGTFLG-----SARFPEFKDEEGQAKAIEQLKKHGI 93 (317)
T ss_pred HHHHHHHHHHCCCEEEEEecCHHHhcCCCeEeCCHHHhhhHHhCCCeeec-----cCCCCccCCHHHHHHHHHHHHHcCC
Confidence 4556666667899999999886 356667777889999999999763 44555544 688999999999987
Q ss_pred e--Eecc
Q 006203 376 A--LSIG 380 (657)
Q Consensus 376 t--lSLG 380 (657)
. +-+|
T Consensus 94 d~Li~IG 100 (317)
T cd00763 94 DALVVIG 100 (317)
T ss_pred CEEEEEC
Confidence 4 4444
No 312
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=22.12 E-value=62 Score=34.69 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEec
Q 006203 296 NLSWEVFRDTLIEQAEQGVDYFTIHA 321 (657)
Q Consensus 296 ~lt~e~~~d~ieeQAeqGVDf~TIHa 321 (657)
-++.+.+.+.|..-|.-+...|-+|-
T Consensus 14 f~~~~~ik~~Id~ma~~K~N~lhlHl 39 (357)
T cd06563 14 FFPVDEVKRFIDLMALYKLNVFHWHL 39 (357)
T ss_pred CcCHHHHHHHHHHHHHhccceEEEee
Confidence 36789999999999999999999996
No 313
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=22.01 E-value=2.4e+02 Score=30.53 Aligned_cols=24 Identities=13% Similarity=0.123 Sum_probs=19.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEE
Q 006203 295 ENLSWEVFRDTLIEQAEQGVDYFT 318 (657)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDf~T 318 (657)
..|+.|++.+.+.+-.+.||.=+.
T Consensus 101 ~~Ls~eEI~~~a~~~~~~Gv~~i~ 124 (366)
T TIGR02351 101 KKLNEEEIEREIEAIKKSGFKEIL 124 (366)
T ss_pred CcCCHHHHHHHHHHHHhCCCCEEE
Confidence 458999999999999999866543
No 314
>PF06368 Met_asp_mut_E: Methylaspartate mutase E chain (MutE); InterPro: IPR006396 Glutamate mutase (methylaspartate mutase) catalyses the reversible interconversion of L-glutamate and L-threo-3-methylaspartate, the first step in the pathway of glutamate fermentation []. Catalysis is initiated using the cobalamin cofactor. The E subunit is the catalytic subunit (MutE) []. ; GO: 0016866 intramolecular transferase activity, 0031419 cobalamin binding, 0019670 anaerobic glutamate catabolic process; PDB: 1CB7_D 1I9C_B 1CCW_D.
Probab=21.86 E-value=1.2e+02 Score=34.57 Aligned_cols=178 Identities=24% Similarity=0.335 Sum_probs=90.3
Q ss_pred HHHHcCCcCch------hhhHHHHHHHHhHhceeEe---cc---CCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCe
Q 006203 349 WCLAYHKENFA------YEHWDEILDICNQYDVALS---IG---DGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQ 416 (657)
Q Consensus 349 Wml~h~~ENpl------Y~~FD~ileI~k~YDVtlS---LG---DGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQ 416 (657)
||+=..|.=|| +++=|+||-...+..|.+- .| -.|=|=||.=| -|+-|- --|.++||.
T Consensus 136 YnlPY~k~vpLe~si~~Wqy~drl~g~y~e~Gv~inrE~FGpLtgtLvPPsisia---v~ilE~-------Lla~eqGVk 205 (441)
T PF06368_consen 136 YNLPYSKNVPLEKSIRDWQYVDRLCGYYEENGVEINREPFGPLTGTLVPPSISIA---VSILEA-------LLAAEQGVK 205 (441)
T ss_dssp TTTTT-SS--HHHHHHHHHHHHHHHHHHHHTT---EEE--TTTTSSS--HHHHHH---HHHHHH-------HHHHHTT--
T ss_pred eccccCCCCCHHHHHHHHHHHHHHHHHHHhcCCccccccCCCCCcCccCcHHHHH---HHHHHH-------HHHHHcCCe
Confidence 55555555554 3444666666666667663 23 33444444322 233332 247889998
Q ss_pred EEeeC---CCCCCCCchHHHHHHHHHhcCC-CC------------cc-ccCccccccCCCchhHHHhHHHHHhhhcccce
Q 006203 417 VMNEG---PGHIPMHKIPENMQKQLEWCNE-AP------------FY-TLGPLTTDIAPGYDHITSAIGAANIGALGTAL 479 (657)
Q Consensus 417 VMIEG---PGHVPl~~I~~Nv~lqk~lC~~-AP------------fY-vLGPLvTDIApGYDHITsAIGaA~aa~~Gadf 479 (657)
-+-=| -||+ .+.|+ -+.--++||++ .| || -.|+.+.|-+-.|-=|+ -|+++|+..||+=
T Consensus 206 siSv~Y~Q~gn~-~QDia-Ai~aLr~L~~eyL~~~g~~dv~i~tV~hqwMG~FP~d~~~A~~li~--~~a~~A~l~gA~k 281 (441)
T PF06368_consen 206 SISVGYAQQGNL-IQDIA-AIRALRELAAEYLPKYGYKDVEITTVFHQWMGGFPQDEAKAFGLIS--WGAATAALAGATK 281 (441)
T ss_dssp EEEEEEE--S-H-HHHHH-HHHHHHHHHHHHHHHTT--S-EEEEEEE---S---SSHHHHHHHHH--HHHHHHHHHT-SE
T ss_pred EEEecccccCCh-HHHHH-HHHHHHHHHHHHHHhcCCCCeEEEEEEeeecCCCCCChhhhHhHHH--HHHHHHHHhCCCE
Confidence 77666 4553 23333 34444444543 23 33 25899999888776554 5899999999999
Q ss_pred eeecCchhhcCCCChhHHHHHHHHHHHHHhHhhhhcCCcc----hhhHHHHHHHHHhhcChHHHHhhc
Q 006203 480 LCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPL----AQTWDDALSKARFEFRWMDQFALS 543 (657)
Q Consensus 480 LCYVTPaEHLgLP~~eDVkeGViA~kIAAHaaDlaKg~p~----A~~rD~~mSkAR~~~dWe~Qf~La 543 (657)
+=-=||.|-+|.|++|.=.+|+-++|-+ .+++++.+- +.+.+.++=++-..-=-++-|+|.
T Consensus 282 vIvKT~~EA~gIPT~eaN~~~l~~t~~~---~~~l~~q~~~~~~~~~~E~~~i~~E~~~ild~Vlelg 346 (441)
T PF06368_consen 282 VIVKTPHEASGIPTKEANAAGLRATKQV---LNMLRDQRLPNSEALEEEKEIIKAEVRAILDAVLELG 346 (441)
T ss_dssp EE---TTTTTSS--HHHHHHHHHHHHHH---HHHTTT------HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEcCHHHHcCCCCHHHHHHHHHHHHHH---HHHhccCCCCCccchhhHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999988888776655 455555332 222333333332222346777777
No 315
>PRK07213 chlorohydrolase; Provisional
Probab=21.80 E-value=1e+03 Score=25.52 Aligned_cols=97 Identities=14% Similarity=0.143 Sum_probs=55.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhH----HHHHHHH
Q 006203 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHW----DEILDIC 370 (657)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~F----D~ileI~ 370 (657)
..++.+.|...++.-.+.|+ .+++|++=+.........+. |.--..|+...+-..-+..|- |+-++.+
T Consensus 174 ~~~s~~~l~~~~~~A~~~g~-~v~~H~~e~~~e~~~~~~~~-------G~~~v~~~~~~G~~~~~i~H~~~~~~~~i~~l 245 (375)
T PRK07213 174 NEYSDEELKFICKECKREKK-IFSIHAAEHKGSVEYSLEKY-------GMTEIERLINLGFKPDFIVHATHPSNDDLELL 245 (375)
T ss_pred ccCCHHHHHHHHHHHHHcCC-EEEEeeCCchhHHHHHHHHc-------CCChHHHHHhcCCCCCEEEECCCCCHHHHHHH
Confidence 45778887777777777787 55899975554333211111 111134555443321122331 3458888
Q ss_pred hHhceeEe--------ccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEee
Q 006203 371 NQYDVALS--------IGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNE 420 (657)
Q Consensus 371 k~YDVtlS--------LGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIE 420 (657)
++++++++ ||.|+-| ++++.++||.|-+=
T Consensus 246 a~~g~~v~~~P~sn~~l~~g~~~---------------------v~~l~~~Gv~v~lG 282 (375)
T PRK07213 246 KENNIPVVVCPRANASFNVGLPP---------------------LNEMLEKGILLGIG 282 (375)
T ss_pred HHcCCcEEECCcchhhhccCCcc---------------------HHHHHHCCCEEEEe
Confidence 99996543 3444322 46778899988874
No 316
>PRK06852 aldolase; Validated
Probab=21.73 E-value=3.2e+02 Score=29.72 Aligned_cols=97 Identities=18% Similarity=0.097 Sum_probs=63.7
Q ss_pred HHHHHHHhCCCEeeecCCC----CChHHHHHHHHhcC-CCccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHh-cCCC
Q 006203 242 KVQWATMWGADTVMDLSTG----RHIHETREWILRNS-AVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAE-QGVD 315 (657)
Q Consensus 242 Kl~~A~~~GADtvMDLSTG----gdi~~~R~~Il~ns-pvPVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAe-qGVD 315 (657)
=++.|.+.|||-|==--|+ +|.+.+|+ +++.+ |+|| .=| ||. .. +.++|++.++++.+ .|..
T Consensus 193 aaRiaaELGADIVKv~y~~~~~~g~~e~f~~-vv~~~g~vpV-----via----GG~-k~-~~~e~L~~v~~ai~~aGa~ 260 (304)
T PRK06852 193 AAGVAACLGADFVKVNYPKKEGANPAELFKE-AVLAAGRTKV-----VCA----GGS-ST-DPEEFLKQLYEQIHISGAS 260 (304)
T ss_pred HHHHHHHHcCCEEEecCCCcCCCCCHHHHHH-HHHhCCCCcE-----EEe----CCC-CC-CHHHHHHHHHHHHHHcCCc
Confidence 3588999999999766664 57788888 56666 6553 222 454 33 88999999999988 7876
Q ss_pred EEEEeccccccccc--c-ccCcccCccccccHHHHHHH
Q 006203 316 YFTIHAGVLLRYIP--L-TAKRMTGIVSRGGSIHAKWC 350 (657)
Q Consensus 316 f~TIHaGv~~~~v~--~-~~~RvtgIVSRGGSi~a~Wm 350 (657)
=+++=--|-..--| . ..+++..||-.|-|.=.+|=
T Consensus 261 Gv~~GRNIfQ~~~p~~~~~~~Ai~~IVH~~~s~~eA~~ 298 (304)
T PRK06852 261 GNATGRNIHQKPLDEAVRMCNAIYAITVEDKSVEEALK 298 (304)
T ss_pred eeeechhhhcCCCchHHHHHHHHHHHHhCCCCHHHHHH
Confidence 55543333333222 1 23677778877666655553
No 317
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=21.70 E-value=40 Score=23.48 Aligned_cols=10 Identities=50% Similarity=1.165 Sum_probs=8.1
Q ss_pred CCCcccCCCC
Q 006203 564 VAHFCSMCGP 573 (657)
Q Consensus 564 ~~~~CSMCGp 573 (657)
++.||+.||-
T Consensus 12 ~~~fC~~CG~ 21 (23)
T PF13240_consen 12 DAKFCPNCGT 21 (23)
T ss_pred cCcchhhhCC
Confidence 4689999994
No 318
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=21.61 E-value=1.6e+02 Score=27.55 Aligned_cols=59 Identities=24% Similarity=0.166 Sum_probs=36.1
Q ss_pred hhhHHHHHHHHhH-hceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEee
Q 006203 360 YEHWDEILDICNQ-YDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNE 420 (657)
Q Consensus 360 Y~~FD~ileI~k~-YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIE 420 (657)
-+.+++|.+.+++ |++.+=+=|.|.-=.-.|.++..+. -..+..|.+.|.++|+-|++=
T Consensus 126 ~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~--~~~~~~l~~la~~~~~~vi~v 185 (193)
T PF13481_consen 126 DEDLEELEAALKELYGPDLVVIDPLQSLHDGDENSNSAV--AQLMQELKRLAKEYGVAVILV 185 (193)
T ss_dssp HHHHHHHHHHHTT----SEEEEE-GGGG--S-TT-HHHH--HHHHHHHHHHHHHH--EEEEE
T ss_pred hHHHHHHHHHHhhcCCCcEEEEcCHHHHhcCCCCCHHHH--HHHHHHHHHHHHHcCCEEEEE
Confidence 4567889999998 7777655565554444477887776 456678888999999998863
No 319
>TIGR03612 RutA pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase.
Probab=21.57 E-value=65 Score=34.43 Aligned_cols=43 Identities=21% Similarity=0.196 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHhc-CCCEEEEeccccccccccccCcccCccc
Q 006203 298 SWEVFRDTLIEQAEQ-GVDYFTIHAGVLLRYIPLTAKRMTGIVS 340 (657)
Q Consensus 298 t~e~~~d~ieeQAeq-GVDf~TIHaGv~~~~v~~~~~RvtgIVS 340 (657)
|+|++.+.|+++.+. |||-|.++..-.++.+++....|+..|.
T Consensus 307 tPe~Vae~l~~~~~~~G~d~f~l~~~~~~~~~~~f~~~VlP~l~ 350 (355)
T TIGR03612 307 SYETVARMLDEVAEVPGTGGVLLTFDDFLEGVEDFGTRIQPLMT 350 (355)
T ss_pred CHHHHHHHHHHHHhccCCCeeEEcCCCCcchHHHHHHhcCHHHh
Confidence 789999999999997 9999999988777777776666666553
No 320
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=21.50 E-value=73 Score=36.92 Aligned_cols=36 Identities=25% Similarity=0.295 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecccccccccccc
Q 006203 296 NLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTA 332 (657)
Q Consensus 296 ~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~ 332 (657)
.+.-+.++++|+--|-.-...+--|- |--+..|+..
T Consensus 194 ylpv~~IkrtLeaMa~nKLNVlHWHi-vDs~SFPle~ 229 (542)
T KOG2499|consen 194 YLPVKVIKRTLEAMAANKLNVLHWHI-VDSQSFPLES 229 (542)
T ss_pred eecHHHHHHHHHHHHhhhhceeEEEe-ecCCCCcccc
Confidence 45667888888888877777666665 4555556543
No 321
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=21.41 E-value=62 Score=37.22 Aligned_cols=55 Identities=33% Similarity=0.400 Sum_probs=34.5
Q ss_pred ceeEeeccccCCCCCChHHHHHHHHHHHH---hCCCEeeecCCCCChHH-HHHHHHhcCCCccccchhhhHHHH
Q 006203 220 LVKVNANIGNSAVASSIEEEVYKVQWATM---WGADTVMDLSTGRHIHE-TREWILRNSAVPVGTVPIYQALEK 289 (657)
Q Consensus 220 ~tKVNANIGtS~~~~~ie~EveKl~~A~~---~GADtvMDLSTGgdi~~-~R~~Il~nspvPVGTVPIYqA~~k 289 (657)
.|+||+.+ +|++|++.-++ +=.|||||+|-|--+== -| ---|.-+.+|-||.-.+
T Consensus 322 lV~vnV~~----------~El~~~k~~I~~LiyP~dtvmD~SIgcafwFAsr-----g~G~~~~~~~sy~s~a~ 380 (520)
T KOG0573|consen 322 LVEVNVTY----------EELQKAKEHIKHLIYPKDTVMDLSIGCAFWFASR-----GRGVDSENQQSYRSYAR 380 (520)
T ss_pred EEeccCCH----------HHHHHHHHHHHHhhCcCccccccccceEEEEeec-----cccccccCccccccccE
Confidence 46777654 78888877654 78999999998742210 01 00144677777875433
No 322
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=21.34 E-value=4.2e+02 Score=27.48 Aligned_cols=84 Identities=15% Similarity=0.192 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHhcC-CCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHh-c
Q 006203 297 LSWEVFRDTLIEQAEQG-VDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQY-D 374 (657)
Q Consensus 297 lt~e~~~d~ieeQAeqG-VDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~Y-D 374 (657)
-+.|+|.+..++-.+.| +|++-|+++.-- ++.||..+.+ +| +...+|++-.|+. |
T Consensus 101 ~~~~~~~~~a~~~~~aG~~D~iElN~~cP~-------------~~~gg~~~~~--------~~--~~~~eiv~~vr~~~~ 157 (301)
T PRK07259 101 STEEEYAEVAEKLSKAPNVDAIELNISCPN-------------VKHGGMAFGT--------DP--ELAYEVVKAVKEVVK 157 (301)
T ss_pred CCHHHHHHHHHHHhccCCcCEEEEECCCCC-------------CCCCcccccc--------CH--HHHHHHHHHHHHhcC
Confidence 36789999888888888 999999886421 1123443221 22 3455666666665 5
Q ss_pred eeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEE
Q 006203 375 VALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVM 418 (657)
Q Consensus 375 VtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVM 418 (657)
+.+++ =|+|. +. .+.++++++.++||.-+
T Consensus 158 ~pv~v--Kl~~~----------~~---~~~~~a~~l~~~G~d~i 186 (301)
T PRK07259 158 VPVIV--KLTPN----------VT---DIVEIAKAAEEAGADGL 186 (301)
T ss_pred CCEEE--EcCCC----------ch---hHHHHHHHHHHcCCCEE
Confidence 44432 13331 11 34567788889998743
No 323
>KOG0846 consensus Mitochondrial/chloroplast ribosomal protein L15/L10 [Translation, ribosomal structure and biogenesis]
Probab=21.32 E-value=32 Score=36.74 Aligned_cols=38 Identities=13% Similarity=0.277 Sum_probs=26.8
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCC
Q 006203 391 ANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMH 428 (657)
Q Consensus 391 A~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~ 428 (657)
..+.--+.-|...|-|.=.-+|+|||.+.+|++|.++.
T Consensus 112 ~~q~Idm~tL~~~g~i~p~~~eyGv~L~~~G~d~~~~~ 149 (274)
T KOG0846|consen 112 PSQPIDMKTLKDSGLINPKGREYGVQLTADGADEFKAK 149 (274)
T ss_pred ccCceeHHHHHhccCCCccccccCceeeccCCccccce
Confidence 33444444455555556667999999999999999864
No 324
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=21.20 E-value=4.4e+02 Score=28.29 Aligned_cols=92 Identities=11% Similarity=0.127 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCcccc--ccHHHHHHHHHcCCcCchhhhHHHHHHHHhH-hc
Q 006203 298 SWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSR--GGSIHAKWCLAYHKENFAYEHWDEILDICNQ-YD 374 (657)
Q Consensus 298 t~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSR--GGSi~a~Wml~h~~ENplY~~FD~ileI~k~-YD 374 (657)
+.+.|.+..+.-.+.|+|.+-||||- |.. .+++. ||+++-. | +...+|++-+++ -+
T Consensus 75 ~p~~~~~aA~~~~~~g~d~IdlN~gC-----P~~-----~v~~~~~Gs~L~~~---------p--~~~~eiv~avr~~v~ 133 (333)
T PRK11815 75 DPADLAEAAKLAEDWGYDEINLNVGC-----PSD-----RVQNGRFGACLMAE---------P--ELVADCVKAMKDAVS 133 (333)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCC-----CHH-----HccCCCeeeHHhcC---------H--HHHHHHHHHHHHHcC
Confidence 66888888877666799999999994 221 11222 5555431 1 222334433343 25
Q ss_pred eeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe
Q 006203 375 VALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN 419 (657)
Q Consensus 375 VtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMI 419 (657)
+.+|+= +|.|.-.+ + ....+-++++++.+.||+..+
T Consensus 134 ~pVsvK--iR~g~~~~--~-----t~~~~~~~~~~l~~aG~d~i~ 169 (333)
T PRK11815 134 IPVTVK--HRIGIDDQ--D-----SYEFLCDFVDTVAEAGCDTFI 169 (333)
T ss_pred CceEEE--EEeeeCCC--c-----CHHHHHHHHHHHHHhCCCEEE
Confidence 555543 36664332 1 123456788888899998765
No 325
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=21.14 E-value=8.1e+02 Score=24.95 Aligned_cols=122 Identities=20% Similarity=0.124 Sum_probs=75.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhc
Q 006203 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYD 374 (657)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YD 374 (657)
.++=.|.|++.+.++..+++++.-+ |. +.+.. ..+. |+-+- + +-++-.+++.++++|
T Consensus 10 ~N~GDe~~l~~~l~~l~~~~~~~v~-s~-~p~~~---~~~~-~v~~~------------~-----r~~~~~~~~~l~~~D 66 (298)
T TIGR03609 10 GNLGDEALLAALLRELPPGVEPTVL-SN-DPAET---AKLY-GVEAV------------N-----RRSLLAVLRALRRAD 66 (298)
T ss_pred CCcchHHHHHHHHHhcCCCCeEEEe-cC-ChHHH---Hhhc-CceEE------------c-----cCCHHHHHHHHHHCC
Confidence 4556689999999999888885544 21 11111 1111 33211 0 124557889999999
Q ss_pred eeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCcc
Q 006203 375 VALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFY 447 (657)
Q Consensus 375 VtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfY 447 (657)
+.++-|.|+ +.|.+. +.-+...-.+...|+..|..|++=|.|-=|++.= .+-.+-+++...+.++
T Consensus 67 ~vI~gGG~l----~~d~~~---~~~~~~~~~~~~~a~~~~k~~~~~g~giGP~~~~-~~r~~~~~~l~~~~~i 131 (298)
T TIGR03609 67 VVIWGGGSL----LQDVTS---FRSLLYYLGLMRLARLFGKPVILWGQGIGPLRRR-LSRWLVRRVLRGCRAI 131 (298)
T ss_pred EEEECCccc----ccCCcc---cccHHHHHHHHHHHHHcCCCEEEEecccCCcCCH-HHHHHHHHHHccCCEE
Confidence 999988764 445442 2223333357788888999999988888888762 3444555555656654
No 326
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=21.08 E-value=1.1e+02 Score=32.54 Aligned_cols=61 Identities=15% Similarity=0.295 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhc
Q 006203 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYD 374 (657)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YD 374 (657)
+..+.|.+-+-|+.-.+.|++.++|+- +.-..++ -.+-.+-|+.+|++|+.|++++
T Consensus 5 e~~~~e~~~~d~~~m~~~G~n~vri~~-~~W~~lE-----------------------P~eG~ydF~~lD~~l~~a~~~G 60 (374)
T PF02449_consen 5 EQWPEEEWEEDLRLMKEAGFNTVRIGE-FSWSWLE-----------------------PEEGQYDFSWLDRVLDLAAKHG 60 (374)
T ss_dssp GGS-CCHHHHHHHHHHHHT-SEEEE-C-CEHHHH------------------------SBTTB---HHHHHHHHHHHCTT
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEEE-echhhcc-----------------------CCCCeeecHHHHHHHHHHHhcc
Confidence 344556666777777888999998865 2333333 2334456788999999999999
Q ss_pred eeEec
Q 006203 375 VALSI 379 (657)
Q Consensus 375 VtlSL 379 (657)
+.+-|
T Consensus 61 i~viL 65 (374)
T PF02449_consen 61 IKVIL 65 (374)
T ss_dssp -EEEE
T ss_pred CeEEE
Confidence 86665
No 327
>COG1312 UxuA D-mannonate dehydratase [Carbohydrate transport and metabolism]
Probab=21.06 E-value=2.5e+02 Score=31.50 Aligned_cols=151 Identities=17% Similarity=0.176 Sum_probs=96.1
Q ss_pred ccccchhhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEec----cccccccccccCcccCccccccHHHHHHHHH
Q 006203 277 PVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHA----GVLLRYIPLTAKRMTGIVSRGGSIHAKWCLA 352 (657)
Q Consensus 277 PVGTVPIYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGVDf~TIHa----Gv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~ 352 (657)
.|=+||+-|.+. .+..--+=--+-+.++|+.-|+.||+-+-.-. +-+|--+. +.-+.||--..|=..
T Consensus 61 vvESvPvhedIK-~g~~~rd~~Ieny~~tirnLa~~GI~vvCYNfMpv~dWtRTdl~--------~~l~~gs~alrfd~~ 131 (362)
T COG1312 61 VVESVPVHEDIK-LGTPTRDRYIENYKQTIRNLARAGIKVVCYNFMPVFDWTRTDLE--------YPLPDGSEALRFDKA 131 (362)
T ss_pred eecCCCHHHHHH-hcCCcHHHHHHHHHHHHHHHHhcCCcEEEeccccccCcccccee--------eecCCCCeeEeeeHh
Confidence 567899999864 33333333446678999999999999765432 11222222 235677777777666
Q ss_pred cCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHH-----------------HHHHHHHHHHhcCC
Q 006203 353 YHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELL-----------------TQGELTRRAWDKDV 415 (657)
Q Consensus 353 h~~ENplY~~FD~ileI~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~-----------------~LGEL~krA~e~gV 415 (657)
--.+-.+..+|++++.=++++.-.+| || || -.+.-..+||.|+. -|-|.+=.|-+.||
T Consensus 132 ~~~a~~~~a~~~~~~~~~~~~~~~m~---gl-PG-~~~~~tl~~~~~~~~~y~~Id~~~L~~nL~yFL~~ViPVAEe~gV 206 (362)
T COG1312 132 DFAAFDLHAEYQEEIARAEERFAEMS---GL-PG-WEEGYTLDQFRELLELYGGIDEEKLWENLAYFLKEVIPVAEEVGV 206 (362)
T ss_pred hhhccccccccHHHHHHHHHhhhccc---CC-CC-CcccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcchHHhcCc
Confidence 66655555567999999999999999 44 77 34444455555554 35666777899999
Q ss_pred eEEeeCCCCCC-----CCchHHHHHHHHHhcC
Q 006203 416 QVMNEGPGHIP-----MHKIPENMQKQLEWCN 442 (657)
Q Consensus 416 QVMIEGPGHVP-----l~~I~~Nv~lqk~lC~ 442 (657)
+.-|-. --=| |..|-.|++-.++++.
T Consensus 207 kmaiHP-DDPP~pi~GLpRIvst~ed~~~ll~ 237 (362)
T COG1312 207 KMAIHP-DDPPWPIFGLPRIVSTIEDYQRLLE 237 (362)
T ss_pred eEEeCC-CCCCccccCcchhcCCHHHHHHHHH
Confidence 987742 1111 4555555555555544
No 328
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=20.90 E-value=3.2e+02 Score=29.27 Aligned_cols=124 Identities=12% Similarity=-0.039 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEecccc---c---cccccccCccc---C-ccccccHHH-------HHHHHHcC---CcC
Q 006203 298 SWEVFRDTLIEQAEQGVDYFTIHAGVL---L---RYIPLTAKRMT---G-IVSRGGSIH-------AKWCLAYH---KEN 357 (657)
Q Consensus 298 t~e~~~d~ieeQAeqGVDf~TIHaGv~---~---~~v~~~~~Rvt---g-IVSRGGSi~-------a~Wml~h~---~EN 357 (657)
+.+++.+.+++..++|.+.|-||.|.. . +.+....+.+- . .|==.+++- ++-|...+ =|-
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik~~~~~~~~~di~~i~~vR~~~G~~~~l~vDan~~~~~~~A~~~~~~l~~~~l~~iEe 222 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLHPWGPGVVRRDLKACLAVREAVGPDMRLMHDGAHWYSRADALRLGRALEELGFFWYED 222 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCchhHHHHHHHHHHHHHHhCCCCeEEEECCCCcCHHHHHHHHHHhhhcCCCeEeC
Confidence 788999999999999999999997632 1 11221111110 0 111112221 12222222 255
Q ss_pred chh-hhHHHHHHHHhHhceeEeccCCCC--CCCc-----cCCCcHH-----HHHHHHHHHHHHHHHHhcCCeEEeeC
Q 006203 358 FAY-EHWDEILDICNQYDVALSIGDGLR--PGSI-----YDANDTA-----QFAELLTQGELTRRAWDKDVQVMNEG 421 (657)
Q Consensus 358 plY-~~FD~ileI~k~YDVtlSLGDGLR--PG~i-----~DA~D~A-----Q~~EL~~LGEL~krA~e~gVQVMIEG 421 (657)
|+. ..++.+-++.++.++-+.+|..+. +... .++-|-. .+.-|-..-++++.|.++||.+|+-+
T Consensus 223 P~~~~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 223 PLREASISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITGAMKTAHLAEAFGLDVELHG 299 (368)
T ss_pred CCCchhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEEEEC
Confidence 664 357888899888999999988763 1111 1122222 22233444477889999999999843
No 329
>PLN02411 12-oxophytodienoate reductase
Probab=20.87 E-value=4.4e+02 Score=29.08 Aligned_cols=126 Identities=16% Similarity=0.120 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHH-HhCCCEeeecCCCCChHHHHHHHH--hcCCCccccchh---hhHHH-----HhcCccCCCCHHHHHH
Q 006203 236 IEEEVYKVQWAT-MWGADTVMDLSTGRHIHETREWIL--RNSAVPVGTVPI---YQALE-----KVDGIAENLSWEVFRD 304 (657)
Q Consensus 236 ie~EveKl~~A~-~~GADtvMDLSTGgdi~~~R~~Il--~nspvPVGTVPI---YqA~~-----k~~g~~~~lt~e~~~d 304 (657)
.-..++|+..++ +.|+-.++-|.-+|-.... .+- ...|++-..+|+ ++... .....+..||.+++.+
T Consensus 85 ~i~~~~~l~~avH~~G~~i~~QL~H~Gr~~~~--~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ 162 (391)
T PLN02411 85 QVEAWKKVVDAVHAKGSIIFCQLWHVGRASHQ--VYQPGGAAPISSTNKPISERWRILMPDGSYGKYPKPRALETSEIPE 162 (391)
T ss_pred HHHHHHHHHHHHHhcCCEEEEeccCCCCCCcc--ccccCCCCccCCccccccCCcccccCCccccCCCCCccCCHHHHHH
Confidence 446667766555 5688999999887743211 000 001111111111 00000 0012457899999988
Q ss_pred HHHHHH-------hcCCCEEEEecc---ccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhH
Q 006203 305 TLIEQA-------EQGVDYFTIHAG---VLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQ 372 (657)
Q Consensus 305 ~ieeQA-------eqGVDf~TIHaG---v~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~ 372 (657)
+|+.-+ +.|.|.+-||++ +.-+.+.-..++-|. --|||+ -++-.|+.|-.+.|-+-+-.
T Consensus 163 ii~~f~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtD--eYGGSl-------ENR~RF~lEIi~aVr~~vg~ 231 (391)
T PLN02411 163 VVEHYRQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTD--EYGGSI-------ENRCRFLMQVVQAVVSAIGA 231 (391)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCC--cCCCCH-------HHHhHHHHHHHHHHHHHcCC
Confidence 887543 689999999996 334444433344455 469997 34556888888888877743
No 330
>PRK07360 FO synthase subunit 2; Reviewed
Probab=20.80 E-value=5.8e+02 Score=27.72 Aligned_cols=27 Identities=19% Similarity=0.248 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecc
Q 006203 296 NLSWEVFRDTLIEQAEQGVDYFTIHAG 322 (657)
Q Consensus 296 ~lt~e~~~d~ieeQAeqGVDf~TIHaG 322 (657)
.|+.|++.+.+++-.+.|+.-+.|=.|
T Consensus 90 ~ls~eeI~~~a~~a~~~G~~~i~l~~G 116 (371)
T PRK07360 90 WLTIAEILEKAAEAVKRGATEVCIQGG 116 (371)
T ss_pred eCCHHHHHHHHHHHHhCCCCEEEEccC
Confidence 489999999999999999887766544
No 331
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=20.64 E-value=3.7e+02 Score=28.94 Aligned_cols=129 Identities=20% Similarity=0.262 Sum_probs=72.1
Q ss_pred EeeccccCCCCCChHHHHHHHHHHHHhCCCEeeecCCCCChHHHH-------------------HHHHhcCC-Cccccch
Q 006203 223 VNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETR-------------------EWILRNSA-VPVGTVP 282 (657)
Q Consensus 223 VNANIGtS~~~~~ie~EveKl~~A~~~GADtvMDLSTGgdi~~~R-------------------~~Il~nsp-vPVGTVP 282 (657)
+-+.|+.| +++.-.|-++.+..+|+| +.||-.|=..+++- +.+-++++ +||- |=
T Consensus 69 ~~vQl~gs----dp~~l~eaA~~~~~~g~~-~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVT-VK 142 (323)
T COG0042 69 VAVQLGGS----DPELLAEAAKIAEELGAD-IIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVT-VK 142 (323)
T ss_pred EEEEecCC----CHHHHHHHHHHHHhcCCC-EEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeE-EE
Confidence 44567654 677888889999999955 55887775555432 23333332 2221 00
Q ss_pred hhhHHHHhcCccCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhh
Q 006203 283 IYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEH 362 (657)
Q Consensus 283 IYqA~~k~~g~~~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~ 362 (657)
.+.|.+-.+..+.+ ....-.+.|++.+|||+=. +|...+.. .+
T Consensus 143 -----iRlG~d~~~~~~~~---ia~~~~~~g~~~ltVHgRt------------------------r~~~y~~~-----ad 185 (323)
T COG0042 143 -----IRLGWDDDDILALE---IARILEDAGADALTVHGRT------------------------RAQGYLGP-----AD 185 (323)
T ss_pred -----EecccCcccccHHH---HHHHHHhcCCCEEEEeccc------------------------HHhcCCCc-----cC
Confidence 01122222222333 3333356679999999832 23333333 78
Q ss_pred HHHHHHHHhHhc-eeEeccCCCCCCCccCCCcHHHHHH
Q 006203 363 WDEILDICNQYD-VALSIGDGLRPGSIYDANDTAQFAE 399 (657)
Q Consensus 363 FD~ileI~k~YD-VtlSLGDGLRPG~i~DA~D~AQ~~E 399 (657)
||.|-++-+.-. +.+ +|+ |.|.+..|.-+..|
T Consensus 186 ~~~I~~vk~~~~~ipv-i~N----GdI~s~~~a~~~l~ 218 (323)
T COG0042 186 WDYIKELKEAVPSIPV-IAN----GDIKSLEDAKEMLE 218 (323)
T ss_pred HHHHHHHHHhCCCCeE-EeC----CCcCCHHHHHHHHH
Confidence 899998888887 444 333 45556655544433
No 332
>PLN02489 homocysteine S-methyltransferase
Probab=20.63 E-value=2.2e+02 Score=30.72 Aligned_cols=103 Identities=17% Similarity=-0.015 Sum_probs=70.5
Q ss_pred ccCCCCCChHHHHHHHHHHHHhCCCEeeecCCCCC-hHHHHHHHHhcCCCccccchh----hhHHHHhcCccCCCCHHHH
Q 006203 228 GNSAVASSIEEEVYKVQWATMWGADTVMDLSTGRH-IHETREWILRNSAVPVGTVPI----YQALEKVDGIAENLSWEVF 302 (657)
Q Consensus 228 GtS~~~~~ie~EveKl~~A~~~GADtvMDLSTGgd-i~~~R~~Il~nspvPVGTVPI----YqA~~k~~g~~~~lt~e~~ 302 (657)
|...+..++++=++.+.. ..++|.|.==.++-+ +..+=+++-...+.|++-.|- |+...+.--...+++.+.|
T Consensus 221 ~~l~~G~~~~~~~~~~~~--~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~~~~~~~~~~~~~~~~~~~ 298 (335)
T PLN02489 221 VNVVSGDSLLECASIADS--CKKVVAVGINCTPPRFIHGLILSIRKVTSKPIVVYPNSGETYDGEAKEWVESTGVSDEDF 298 (335)
T ss_pred CccCCCCcHHHHHHHHHh--cCCceEEEecCCCHHHHHHHHHHHHhhcCCcEEEECCCCCCCCCccCcccCCCCCCHHHH
Confidence 444455566665555532 136788876556543 556666666667888888776 5543221012356889999
Q ss_pred HHHHHHHHhcCCCEEEEecccccccccccc
Q 006203 303 RDTLIEQAEQGVDYFTIHAGVLLRYIPLTA 332 (657)
Q Consensus 303 ~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~ 332 (657)
-+.+.+-.+.||.++.==||++.++|....
T Consensus 299 ~~~~~~~~~~Ga~iIGGCCgt~P~hI~al~ 328 (335)
T PLN02489 299 VSYVNKWRDAGASLIGGCCRTTPNTIRAIS 328 (335)
T ss_pred HHHHHHHHHCCCcEEeeCCCCCHHHHHHHH
Confidence 999999999999999999999999998533
No 333
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=20.60 E-value=2.9e+02 Score=28.73 Aligned_cols=104 Identities=15% Similarity=0.109 Sum_probs=56.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcC--chhhh----HHHHHH
Q 006203 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKEN--FAYEH----WDEILD 368 (657)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~EN--plY~~----FD~ile 368 (657)
..++.+.|.+.++.-.+.|.- +++||+=....++..... -|.-...|+..++.-+ .+..| -++.++
T Consensus 189 ~~~~~~~l~~~~~~A~~~g~~-v~~H~~e~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~H~~~l~~~~~~ 260 (411)
T cd01298 189 YTCSDELLREVAELAREYGVP-LHIHLAETEDEVEESLEK-------YGKRPVEYLEELGLLGPDVVLAHCVWLTDEEIE 260 (411)
T ss_pred ccCCHHHHHHHHHHHHHcCCc-EEEEecCCHHHHHHHHHH-------hCCCHHHHHHHcCCCCCCeEEEEecCCCHHHHH
Confidence 356788888888888888986 589985443333211111 0111223333222111 11122 246788
Q ss_pred HHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe
Q 006203 369 ICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN 419 (657)
Q Consensus 369 I~k~YDVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQVMI 419 (657)
.+++.++++++--. + +. .+. .--.-.++++++||.+.+
T Consensus 261 ~l~~~gi~~~~~p~----~-----~~-~~~---~~~~~~~~~~~~Gv~~~~ 298 (411)
T cd01298 261 LLAETGTGVAHNPA----S-----NM-KLA---SGIAPVPEMLEAGVNVGL 298 (411)
T ss_pred HHHHcCCeEEEChH----H-----hh-hhh---hCCCCHHHHHHCCCcEEE
Confidence 99999999885531 0 00 000 001235788999999877
No 334
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=20.59 E-value=81 Score=34.11 Aligned_cols=18 Identities=33% Similarity=0.217 Sum_probs=16.2
Q ss_pred HHHHHHHHHhCCCEeeec
Q 006203 240 VYKVQWATMWGADTVMDL 257 (657)
Q Consensus 240 veKl~~A~~~GADtvMDL 257 (657)
.|.+++|.++||-+||-|
T Consensus 20 ~eqa~iae~aga~avm~l 37 (287)
T TIGR00343 20 PEQAKIAEEAGAVAVMAL 37 (287)
T ss_pred HHHHHHHHHcCceEEEee
Confidence 477899999999999986
No 335
>CHL00120 psaL photosystem I subunit XI; Validated
Probab=20.57 E-value=31 Score=33.94 Aligned_cols=45 Identities=38% Similarity=0.484 Sum_probs=31.6
Q ss_pred CCccccCcc-ccccCCCchhHHHhHHHHHhhhcccceeeecCchhhc
Q 006203 444 APFYTLGPL-TTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHL 489 (657)
Q Consensus 444 APfYvLGPL-vTDIApGYDHITsAIGaA~aa~~GadfLCYVTPaEHL 489 (657)
-||+.|||| -||+| .---.-||||-.++...+-.+.--|+.++.-
T Consensus 60 GPf~~lGPLRnt~~a-~laGllsaiglv~Ilt~~L~~Yg~~~~~~~~ 105 (143)
T CHL00120 60 GPFYKLGPLRNSDVA-LLAGFLSAIGLIIILTLCLTIYGVVSFQEED 105 (143)
T ss_pred chHHhhCCCcCchHH-HHHHHHHHHHHHHHHHHHHHHhcccccCCCC
Confidence 499999999 67775 3334567888888776666666666666643
No 336
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=20.50 E-value=9.5e+02 Score=24.80 Aligned_cols=90 Identities=18% Similarity=0.161 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHh-
Q 006203 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQY- 373 (657)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~Y- 373 (657)
.+++++.+.+.++.+.+.|||-+.+ +|-+=+..-++ -+++.++++++.++
T Consensus 14 g~iD~~~~~~~i~~l~~~Gv~Gi~~-~GstGE~~~Ls----------------------------~~Er~~~~~~~~~~~ 64 (285)
T TIGR00674 14 GSVDFAALEKLIDFQIENGTDAIVV-VGTTGESPTLS----------------------------HEEHKKVIEFVVDLV 64 (285)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEE-CccCcccccCC----------------------------HHHHHHHHHHHHHHh
Confidence 4699999999999999999999876 45444444332 24455666666554
Q ss_pred --ceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCe-EEeeCCCCCCC
Q 006203 374 --DVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQ-VMNEGPGHIPM 427 (657)
Q Consensus 374 --DVtlSLGDGLRPG~i~DA~D~AQ~~EL~~LGEL~krA~e~gVQ-VMIEGPGHVPl 427 (657)
++.+-. |..+.+ +.| .-+|++.|.+.|+. ||+=-|=+.++
T Consensus 65 ~~~~~vi~------gv~~~s-----~~~---~i~~a~~a~~~Gad~v~v~pP~y~~~ 107 (285)
T TIGR00674 65 NGRVPVIA------GTGSNA-----TEE---AISLTKFAEDVGADGFLVVTPYYNKP 107 (285)
T ss_pred CCCCeEEE------eCCCcc-----HHH---HHHHHHHHHHcCCCEEEEcCCcCCCC
Confidence 233332 222222 222 44677888889988 56633444333
No 337
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=20.47 E-value=3.3e+02 Score=27.82 Aligned_cols=77 Identities=14% Similarity=0.208 Sum_probs=46.3
Q ss_pred CCceeEeeccccCCCCCChHHHHHHHHHHHHhCCCEeeecCCCC-----ChHHHHHHHHhcCCCccccchhhhHHHHhcC
Q 006203 218 NFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLSTGR-----HIHETREWILRNSAVPVGTVPIYQALEKVDG 292 (657)
Q Consensus 218 ~l~tKVNANIGtS~~~~~ie~EveKl~~A~~~GADtvMDLSTGg-----di~~~R~~Il~nspvPVGTVPIYqA~~k~~g 292 (657)
-+.+|+..+. . ++-++-++.+.++|+|.| ..+++. |++.+++-- . ++||. .+|
T Consensus 141 pVsvKir~g~--~------~~~~~la~~l~~aG~d~i-hv~~~~~g~~ad~~~I~~i~---~-----~ipVI-----gnG 198 (233)
T cd02911 141 PVSVKIRAGV--D------VDDEELARLIEKAGADII-HVDAMDPGNHADLKKIRDIS---T-----ELFII-----GNN 198 (233)
T ss_pred CEEEEEcCCc--C------cCHHHHHHHHHHhCCCEE-EECcCCCCCCCcHHHHHHhc---C-----CCEEE-----EEC
Confidence 4778888763 1 222334567789999965 777765 344444421 1 24442 246
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCCEEEEecc
Q 006203 293 IAENLSWEVFRDTLIEQAEQGVDYFTIHAG 322 (657)
Q Consensus 293 ~~~~lt~e~~~d~ieeQAeqGVDf~TIHaG 322 (657)
.+. |+++..+.++ .|+|.+-|=-|
T Consensus 199 gI~--s~eda~~~l~----~GaD~VmiGR~ 222 (233)
T cd02911 199 SVT--TIESAKEMFS----YGADMVSVARA 222 (233)
T ss_pred CcC--CHHHHHHHHH----cCCCEEEEcCC
Confidence 554 6788777775 48998876444
No 338
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=20.40 E-value=1.1e+02 Score=32.68 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEeccc
Q 006203 296 NLSWEVFRDTLIEQAEQGVDYFTIHAGV 323 (657)
Q Consensus 296 ~lt~e~~~d~ieeQAeqGVDf~TIHaGv 323 (657)
.+|.++.++.+..-.+.||||++||.|-
T Consensus 231 g~~~ee~~~i~~~L~~~GvD~I~Vs~g~ 258 (353)
T cd04735 231 GIRMEDTLALVDKLADKGLDYLHISLWD 258 (353)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccCc
Confidence 5678888888888888999999999984
No 339
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=20.10 E-value=3.5e+02 Score=26.31 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccc
Q 006203 298 SWEVFRDTLIEQAEQGVDYFTIHAGV 323 (657)
Q Consensus 298 t~e~~~d~ieeQAeqGVDf~TIHaGv 323 (657)
+.++|.+..+.-.+.|+|.+=||+|-
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~ 90 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGC 90 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 57888888887777799999999994
No 340
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=20.07 E-value=1.1e+02 Score=33.31 Aligned_cols=28 Identities=21% Similarity=0.130 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEeccc
Q 006203 296 NLSWEVFRDTLIEQAEQGVDYFTIHAGV 323 (657)
Q Consensus 296 ~lt~e~~~d~ieeQAeqGVDf~TIHaGv 323 (657)
.+|.|+..+.+..-.+.||||+.||.|.
T Consensus 248 g~~~e~~~~~~~~l~~~gvD~l~vs~g~ 275 (382)
T cd02931 248 GRDLEEGLKAAKILEEAGYDALDVDAGS 275 (382)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEeCCCC
Confidence 5788998888888888899999999984
No 341
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=20.03 E-value=6e+02 Score=24.79 Aligned_cols=130 Identities=16% Similarity=0.061 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEecc
Q 006203 301 VFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIG 380 (657)
Q Consensus 301 ~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~RvtgIVSRGGSi~a~Wml~h~~ENplY~~FD~ileI~k~YDVtlSLG 380 (657)
..-+.+.+-++.|++++-|+.+. ....+... ++ .-....++++|++++.|++|++.+.|
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~-~~~~~~~~---------~~----------~~~~~~~~~ld~~v~~a~~~gi~vil- 80 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGW-EAYQEPNP---------GY----------NYDETYLARLDRIVDAAQAYGIYVIL- 80 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEES-TSTSTTST---------TT----------SBTHHHHHHHHHHHHHHHHTT-EEEE-
T ss_pred CHHHHHHHHHHCCCCEEEeCCCH-HHhcCCCC---------Cc----------cccHHHHHHHHHHHHHHHhCCCeEEE-
Confidence 33444555688999999999873 11111000 00 11225679999999999999998866
Q ss_pred CCCC-CCC----ccCCCcHHHHHHHH-HHHHHHHHHHhcCCeEEeeC---CCCCCC-------------CchHHHHHHHH
Q 006203 381 DGLR-PGS----IYDANDTAQFAELL-TQGELTRRAWDKDVQVMNEG---PGHIPM-------------HKIPENMQKQL 438 (657)
Q Consensus 381 DGLR-PG~----i~DA~D~AQ~~EL~-~LGEL~krA~e~gVQVMIEG---PGHVPl-------------~~I~~Nv~lqk 438 (657)
|--. ||. -.........+.+. ..-.|++|-....--+.+|= |...+. .-+..-++..+
T Consensus 81 d~h~~~~w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir 160 (281)
T PF00150_consen 81 DLHNAPGWANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIR 160 (281)
T ss_dssp EEEESTTCSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHH
T ss_pred EeccCccccccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHH
Confidence 4444 332 11122222222333 35567777655566666662 332221 22344445556
Q ss_pred HhcCCCCccccCc
Q 006203 439 EWCNEAPFYTLGP 451 (657)
Q Consensus 439 ~lC~~APfYvLGP 451 (657)
+.+.+.+..+=|+
T Consensus 161 ~~~~~~~i~~~~~ 173 (281)
T PF00150_consen 161 AADPNHLIIVGGG 173 (281)
T ss_dssp HTTSSSEEEEEEH
T ss_pred hcCCcceeecCCC
Confidence 6666655554443
Done!