Query 006204
Match_columns 657
No_of_seqs 367 out of 1206
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 19:53:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006204.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006204hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03191 Type I inositol-1,4,5 100.0 1E-142 3E-147 1177.7 42.7 567 30-638 10-620 (621)
2 KOG0566 Inositol-1,4,5-triphos 100.0 8.9E-89 1.9E-93 765.6 25.1 310 103-625 529-844 (1080)
3 smart00128 IPPc Inositol polyp 100.0 1.4E-75 3E-80 613.5 27.9 225 385-618 80-310 (310)
4 COG5411 Phosphatidylinositol 5 100.0 9.5E-64 2.1E-68 532.6 19.2 313 92-621 16-335 (460)
5 PTZ00312 inositol-1,4,5-tripho 100.0 5.4E-30 1.2E-34 263.3 11.3 173 428-610 65-356 (356)
6 KOG0565 Inositol polyphosphate 100.0 2.6E-28 5.6E-33 229.5 11.2 142 386-528 2-145 (145)
7 KOG1976 Inositol polyphosphate 99.7 6.1E-18 1.3E-22 175.0 6.1 166 428-612 154-388 (391)
8 TIGR03395 sphingomy sphingomye 98.5 1.9E-06 4.1E-11 90.5 14.7 70 426-504 116-189 (283)
9 PRK05421 hypothetical protein; 98.3 9.3E-06 2E-10 83.9 14.5 126 431-612 135-261 (263)
10 PF03372 Exo_endo_phos: Endonu 98.1 9.3E-07 2E-11 84.6 1.2 97 396-508 72-172 (249)
11 COG3568 ElsH Metal-dependent h 97.6 0.00042 9.1E-09 72.5 10.4 55 431-502 119-174 (259)
12 PRK11756 exonuclease III; Prov 97.5 0.00045 9.7E-09 71.0 9.1 64 431-504 89-155 (268)
13 TIGR00633 xth exodeoxyribonucl 97.4 0.0013 2.7E-08 66.2 10.7 34 114-151 2-36 (255)
14 PTZ00297 pantothenate kinase; 97.1 0.0049 1.1E-07 77.7 14.0 70 428-503 130-206 (1452)
15 PLN03144 Carbon catabolite rep 96.0 0.021 4.6E-07 66.4 8.9 63 443-520 417-480 (606)
16 COG3021 Uncharacterized protei 95.4 0.1 2.2E-06 56.1 10.3 132 429-612 173-307 (309)
17 TIGR00195 exoDNase_III exodeox 95.2 0.12 2.7E-06 52.6 10.1 34 114-151 2-35 (254)
18 KOG3873 Sphingomyelinase famil 95.1 0.1 2.2E-06 57.2 9.3 201 386-614 68-294 (422)
19 PRK13911 exodeoxyribonuclease 95.0 0.28 6E-06 51.0 12.1 35 114-151 2-36 (250)
20 PF14529 Exo_endo_phos_2: Endo 94.7 0.054 1.2E-06 47.9 5.1 33 575-607 86-119 (119)
21 PRK15251 cytolethal distending 93.8 0.29 6.3E-06 51.9 9.0 55 430-503 141-195 (271)
22 smart00476 DNaseIc deoxyribonu 93.8 0.16 3.5E-06 53.9 7.1 44 444-503 143-187 (276)
23 PRK13911 exodeoxyribonuclease 92.2 0.058 1.3E-06 56.1 1.2 53 435-503 91-147 (250)
24 COG0708 XthA Exonuclease III [ 90.5 0.051 1.1E-06 57.3 -1.4 33 114-151 2-35 (261)
25 KOG2756 Predicted Mg2+-depende 90.1 0.96 2.1E-05 48.2 7.5 63 434-506 195-257 (349)
26 KOG2338 Transcriptional effect 86.5 1.1 2.4E-05 51.0 5.6 94 400-503 204-303 (495)
27 PRK11756 exonuclease III; Prov 77.9 0.6 1.3E-05 48.1 -0.5 34 114-151 2-35 (268)
28 TIGR00633 xth exodeoxyribonucl 73.2 1.4 2.9E-05 44.4 0.6 53 443-505 100-154 (255)
29 TIGR00195 exoDNase_III exodeox 68.8 1.7 3.7E-05 44.4 0.2 53 444-506 98-152 (254)
30 PRK15251 cytolethal distending 60.7 7.2 0.00016 41.7 3.0 43 113-157 25-71 (271)
31 PRK05421 hypothetical protein; 58.1 5.6 0.00012 41.4 1.7 36 112-151 43-78 (263)
32 cd01251 PH_centaurin_alpha Cen 28.2 43 0.00093 30.2 2.2 34 147-181 69-102 (103)
33 COG5629 Predicted metal-bindin 24.9 26 0.00055 37.6 0.2 21 9-29 101-121 (321)
34 KOG3870 Uncharacterized conser 21.5 39 0.00084 38.2 0.7 15 490-504 350-364 (434)
35 PF07494 Reg_prop: Two compone 20.3 45 0.00098 22.6 0.6 8 112-119 17-24 (24)
36 PF08053 Tna_leader: Tryptopha 20.1 17 0.00037 24.7 -1.4 14 37-50 8-21 (24)
No 1
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=100.00 E-value=1.3e-142 Score=1177.68 Aligned_cols=567 Identities=46% Similarity=0.830 Sum_probs=468.8
Q ss_pred cccchHHHHHHHhcccCCCCCCCCCCCCCCCCCCCcchhhhhcccc--------CCccccc------c---CCCCCChhh
Q 006204 30 QLFWPRVVMRKWLNISTKDSDFSADTDEDDIDGDSDTEEFAQSQFR--------VPKEEEA------Q---YDPNETFPR 92 (657)
Q Consensus 30 ~~~Wp~~v~~Kwlni~~~~~df~ad~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~------~---~~~~~~~~~ 92 (657)
|+||||+||||||||++|++||+||+.|++.++++|.++....+.. +.+.+.+ + ..++++.++
T Consensus 10 ~~~w~~~v~rkwlni~~k~~df~ad~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (621)
T PLN03191 10 EAFWPSIVMKKWLNIKPKVYDFSEDEYDTETESEDDACSVKDVRVNVDEDHANRRQGNQSVFGNQISDGGVSVSKGYSSK 89 (621)
T ss_pred ccccHHHHHHHHhCcCCcccccCcccccCCCccccchhhhhcccccccccccccccccccccccccccCccccccccchh
Confidence 3499999999999999999999999998755555555443322111 1111111 1 234566799
Q ss_pred hhhcccchhhcccceeeeEEEEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeeeeecCCCcccccCCCCchhhHH
Q 006204 93 IRRRKSETFRAQYINTKEVRICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEIVPLTAGNIFGAEDSRPVSKWE 172 (657)
Q Consensus 93 ~~~~~~e~~r~~y~~~~~~rifvGTwNV~G~~p~~~~dL~~WL~~~~~~DIYvlGfQEiV~Lna~~vl~~ed~~~~~~W~ 172 (657)
+||||+||+|+|||+++++|||||||||||+.|+.+++|.+||..++|||||||||||||||||||||+++++.|+++|+
T Consensus 90 ~rr~~~e~~ra~y~~~~~~rv~v~TWNV~g~~p~~~l~l~~wl~~~~p~DiyviG~QE~v~lna~nv~~~~~~~~~~~W~ 169 (621)
T PLN03191 90 HRRGKSETLRAQYINTKDIRVTIGTWNVAGRLPSEDLEIEDWLSTEEPADIYIIGFQEVVPLNAGNVLGAEDSRPIPKWE 169 (621)
T ss_pred hhccchhhhHHHhccccceEEEEEEeecCCCCCcccCCHHHhccCCCCCCEEEEeeEEeccCcHhhhhccccCCchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCCCCcccccCCCCCCCCCCCCCCCcchhhhhcccCCCCCCCccccCCCCCCCCcccCCCcccccccccc
Q 006204 173 NIIRDTLNRIRHTTGRVKSLSDPPSPSKFKPSEDIPDIEEEITHESDSDVGEEVYPLDDENNGFDEVNDKPVKMFTNYEV 252 (657)
Q Consensus 173 ~~i~~aLn~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (657)
.+|+++||+..+..+++||||+||||++ .|++ +++|++.|+|+ ||+++.+..|....+.
T Consensus 170 ~~i~~tl~~~~~~~~~~k~~S~ppsp~~-~~~~----~~~e~~~~~d~------~~~~~~~~~~~~~~~~---------- 228 (621)
T PLN03191 170 AIIRRTLNKSNKPESKHKSYSAPPSPVL-RTSI----VADELAEEVDS------LPLEMMNNEFIDAATG---------- 228 (621)
T ss_pred HHHHHHHhccCCCCCccccCCCCCCccc-CCcc----hhhhhhhhccc------Chhhhccccccccccc----------
Confidence 9999999999999999999999999998 6654 78999999876 6666655433111110
Q ss_pred cccccccccCCcchhhcccccCCCccchhhhhhhcccccCCCCcchhccccccccccccccccCCCCCCCCccccccccc
Q 006204 253 SACADSAKLDMPAENNLQRHFSSPKRFDRLYCLRMEESKGNVEAPAVQYNGRLTKMLSGSERIGLSWPEPPLNLLTQKVL 332 (657)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~r~~~~~~e~~~~~~~~~~~ 332 (657)
+.....+.+++|++|+ .+.....+...++++|+|+||+|+||||.|||+||++++|+..
T Consensus 229 ---------~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~r~~s~~~r~~~~~~e~p~~~~~~~~~ 287 (621)
T PLN03191 229 ---------CPSLEPERNKNIGWPE------------HSLDATPQVVSSNSKLRRVFSSSARLGFKWPENPSLFSPQRFA 287 (621)
T ss_pred ---------ccccchhhccccCCcc------------cccccCcccccccccceeeeccccccccCCCCCccccCchhhc
Confidence 0011124555666553 1222233334568899999999999999999999999999887
Q ss_pred cCCCccccc-cccccc-ccc-------------ccccCCCCCccc-chhHHHHHHhhhH----HHH--HhhcCCCCeEEE
Q 006204 333 ERPNSLKTV-KSFKTS-NSF-------------RRYSSFKPAVDD-MSSELALLAEIDI----ETL--MKRKRRSSYVRM 390 (657)
Q Consensus 333 ~~~~s~~~~-~~~~~~-~~~-------------~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~--~~~~~~~~Y~~v 390 (657)
.+.+++++. .||... .++ ....+++++.+. ...+.+++++++. +.. ..+....+|++|
T Consensus 288 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YvkV 367 (621)
T PLN03191 288 LNARGLKRSHRSFGNLGLSWNEIKQRSEVPEVPEVIDSLSDVSDRSSEAEDDTFKEVPSYQLPEDLIKDCRKVKQKYVRI 367 (621)
T ss_pred ccccccchhhhccccccccccchhhcccccccccccccccccccccCCCcccccccCChhhhhhHHHHhhccCCCCEEEE
Confidence 776655531 222111 000 111233333332 3334445555544 333 355678899999
Q ss_pred EeechheeeeeeeeecccccccceeeEeEEEeeeccccccceEEEEEEEEcCEEEEEEeecCCCCCCCcCHHHHHHHHHH
Q 006204 391 VSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHE 470 (657)
Q Consensus 391 ~SkqMvGI~L~V~vR~~L~~~I~~v~vs~VgtGl~G~lGNKGaVsVr~~i~~Ts~cFVn~HLaAgek~~d~~rRN~D~~e 470 (657)
.|+|||||+|+||||+++.++|++|++++|+||+||++||||||+|+|.|++|+||||||||+||++++++++||+|+.+
T Consensus 368 ~S~qLvGl~L~VFvk~~l~~~Is~V~~s~V~tGl~G~~GNKGAVaIr~~l~~Ts~cFVn~HLAAg~~~~~~~rRN~D~~~ 447 (621)
T PLN03191 368 VSKQMVGIYVSVWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSISMSLFQSRLCFVCSHLTSGHKDGAEQRRNADVYE 447 (621)
T ss_pred EEEeeeeEEEEEEEehhhhhhcccceeeeEeeccccccccceeEEEEEEEcCcEEEEEEeccccccccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred HHHhcCCCCCcCCCCCcccCCcceEEEeCccCccccCChHHHHHHHhhhcHHHHHhhhHhHHHHhcCCcccCcccCCccc
Q 006204 471 IHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLIF 550 (657)
Q Consensus 471 Il~r~~F~~~~~~~~P~~I~dhD~vfW~GDLNYRI~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~F 550 (657)
|++++.|........|..|.+||+|||||||||||++++++++++|.+++|+.||++|||+.|+++|++|.||+||+|+|
T Consensus 448 I~~~l~F~~~~~~~~~~~I~dhD~vFWlGDLNYRIdl~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~GF~Eg~I~F 527 (621)
T PLN03191 448 IIRRTRFSSVLDTDQPQTIPSHDQIFWFGDLNYRLNMLDTEVRKLVAQKRWDELINSDQLIKELRSGHVFDGWKEGPIKF 527 (621)
T ss_pred HHhccccCcccccCCCccccccceEEEecCccccccCCHHHHHHHHhhccHHHHHHHhHHHHHHHcCCccCCcccCCccC
Confidence 99999997654455688999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCccccCCC--CCCCCCCCccccceeeccCCceEeeeeccccCCCCCCCceeEEEEEEEEeChhhhhhhccc
Q 006204 551 APTYKYELNSEKYYGED--PKVGRRNPSWCDRILSYGKGMRLLNYRRNEIKMSDHRPVTATYMAEVEVFSPRKLQRALTL 628 (657)
Q Consensus 551 pPTYKy~~~sd~Y~~~~--~~~kkR~PAWCDRIL~~g~gi~~l~Y~s~el~~SDHRPV~A~F~v~V~v~~~~klqr~l~~ 628 (657)
||||||+.|++.|++.+ ++.++|+|||||||||++++++++.|.+.++++||||||+|+|.++|++++++|+||++++
T Consensus 528 pPTYKYd~gSd~Ydg~~~~Ts~KkR~PSWCDRILykg~~i~~l~Y~s~ei~~SDHRPV~A~F~v~V~~id~~k~q~~~~~ 607 (621)
T PLN03191 528 PPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGKGIKQLCYKRSEIRLSDHRPVSSMFLVEVEVFDHRKLQRALNV 607 (621)
T ss_pred CCCcccccCCccccccccccccCccccchhheEeecCCCceEeEeccCCcccCCchhcceEEEEEEEecCHHHHHhhhhc
Confidence 99999999999998643 3467999999999999999999999999999999999999999999999999999999999
Q ss_pred chhh---hhhhhh
Q 006204 629 TDAE---IENEDV 638 (657)
Q Consensus 629 ~~~~---~~~~~~ 638 (657)
++++ |++|..
T Consensus 608 ~~a~~~~~~~~~~ 620 (621)
T PLN03191 608 NSAAASAVHPEPS 620 (621)
T ss_pred chhhhhccCCccC
Confidence 9999 888754
No 2
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.9e-89 Score=765.64 Aligned_cols=310 Identities=41% Similarity=0.718 Sum_probs=289.8
Q ss_pred cccceeeeEEEEEeeeeCCCCCCCCCCCcccccCCC------CCCCEEEEeeeeeeecCCCcccccCCCCchhhHHHHHH
Q 006204 103 AQYINTKEVRICVGTWNVGGKLPPDDLDIDDWIDMN------EPADIYVLGLQEIVPLTAGNIFGAEDSRPVSKWENIIR 176 (657)
Q Consensus 103 ~~y~~~~~~rifvGTwNV~G~~p~~~~dL~~WL~~~------~~~DIYvlGfQEiV~Lna~~vl~~ed~~~~~~W~~~i~ 176 (657)
.+|+..++||||||||||||+.+....||++||++. .+||||||||||||+||||||++|+. ...+.|++.|+
T Consensus 529 ~eyt~~k~i~IfvgTfNvNG~s~~~k~~L~~WLfp~s~~~~~~~aDIyviG~eEvVeLnag~iv~As~-tk~~~Wee~i~ 607 (1080)
T KOG0566|consen 529 SEYTEPKDISIFVGTFNVNGRSAAFKDDLSDWLFPISRGKEFSPADIYVIGFEEVVELNAGNIVSAST-TKRRFWEEKIL 607 (1080)
T ss_pred hhhccccceEEEEEeeeccCccccchhhHHhhccccccCCcCCcCcEEEEeehhhhhcCccceeccCh-HHHHHHHHHHH
Confidence 459999999999999999997766656899999953 37999999999999999999999864 56899999999
Q ss_pred HHhcccCCCCCcccccCCCCCCCCCCCCCCCcchhhhhcccCCCCCCCccccCCCCCCCCcccCCCcccccccccccccc
Q 006204 177 DTLNRIRHTTGRVKSLSDPPSPSKFKPSEDIPDIEEEITHESDSDVGEEVYPLDDENNGFDEVNDKPVKMFTNYEVSACA 256 (657)
Q Consensus 177 ~aLn~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (657)
++||+.
T Consensus 608 ~~Ln~~-------------------------------------------------------------------------- 613 (1080)
T KOG0566|consen 608 KTLNRY-------------------------------------------------------------------------- 613 (1080)
T ss_pred HHhcCC--------------------------------------------------------------------------
Confidence 998874
Q ss_pred cccccCCcchhhcccccCCCccchhhhhhhcccccCCCCcchhccccccccccccccccCCCCCCCCccccccccccCCC
Q 006204 257 DSAKLDMPAENNLQRHFSSPKRFDRLYCLRMEESKGNVEAPAVQYNGRLTKMLSGSERIGLSWPEPPLNLLTQKVLERPN 336 (657)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~r~~~~~~e~~~~~~~~~~~~~~~ 336 (657)
T Consensus 614 -------------------------------------------------------------------------------- 613 (1080)
T KOG0566|consen 614 -------------------------------------------------------------------------------- 613 (1080)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccccccCCCCCcccchhHHHHHHhhhHHHHHhhcCCCCeEEEEeechheeeeeeeeecccccccceee
Q 006204 337 SLKTVKSFKTSNSFRRYSSFKPAVDDMSSELALLAEIDIETLMKRKRRSSYVRMVSKQMVGIFLTIWVRRSLRRHIQNVR 416 (657)
Q Consensus 337 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~SkqMvGI~L~V~vR~~L~~~I~~v~ 416 (657)
..+|+++.|.||||++|.||+|.+..++|++|.
T Consensus 614 -----------------------------------------------~~kYvlL~s~QlvGv~L~iF~r~~~~p~Ik~V~ 646 (1080)
T KOG0566|consen 614 -----------------------------------------------KNKYVLLRSEQLVGVCLLLFIRPDHAPYIKDVA 646 (1080)
T ss_pred -----------------------------------------------CCceEEEehhhhheeeEEEEEcccccchhhhcc
Confidence 027899999999999999999999999999999
Q ss_pred EeEEEeeeccccccceEEEEEEEEcCEEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCcCCCCCcccCCcceEE
Q 006204 417 VSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERII 496 (657)
Q Consensus 417 vs~VgtGl~G~lGNKGaVsVr~~i~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vf 496 (657)
.++++||++|..||||||+|||.++.|+|||||+|||||+.+ ...||.||.+|.++++|+ +.+.|.+||+||
T Consensus 647 ~~tkKTGfGG~tgNKGAVAIrf~~~~TsfCFv~SHlAAG~sn--v~ERn~DY~tI~r~l~Fp------~Gr~I~~HD~if 718 (1080)
T KOG0566|consen 647 GDTKKTGFGGATGNKGAVAIRFVYHATSFCFVCSHLAAGQSN--VEERNEDYKTIARKLRFP------RGRMIFSHDYIF 718 (1080)
T ss_pred cceeecccccccCCCceEEEEEEeccccEEEEecccccccch--HhhhhhhHHHHHHhcccc------CCccccCCceEE
Confidence 999999999999999999999999999999999999999987 568999999999999996 457899999999
Q ss_pred EeCccCccccCChHHHHHHHhhhcHHHHHhhhHhHHHHhcCCcccCcccCCcccCCCcccccCCccccCCCCCCCCCCCc
Q 006204 497 WLGDLNYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPS 576 (657)
Q Consensus 497 W~GDLNYRI~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~sd~Y~~~~~~~kkR~PA 576 (657)
|+|||||||++++++|+.+|.+++|+.|+++|||.+|+.+|.+|.||.|++|+|+|||||+.||+.||++ +|+|+||
T Consensus 719 W~GDFNYRI~l~nEEVr~~v~~~d~~kL~e~DQL~~q~~~G~vF~gF~E~~ltF~PTYKyD~gTd~YDTS---eK~R~PA 795 (1080)
T KOG0566|consen 719 WLGDFNYRIDLSNEEVRRLVRNQDLDKLLEYDQLTQQMNAGQVFPGFHEGQLTFPPTYKYDPGTDDYDTS---EKCRTPA 795 (1080)
T ss_pred EecccceeecCCHHHHHHHHHhccHHHHhhHHHHHHHHhcCcccccccccccccCCcccccCCCCccccc---hhccCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999974 6899999
Q ss_pred cccceeeccCCceEeeeeccccCCCCCCCceeEEEEEEEEeChhhhhhh
Q 006204 577 WCDRILSYGKGMRLLNYRRNEIKMSDHRPVTATYMAEVEVFSPRKLQRA 625 (657)
Q Consensus 577 WCDRIL~~g~gi~~l~Y~s~el~~SDHRPV~A~F~v~V~v~~~~klqr~ 625 (657)
|||||||++..+.++.|.+.|+++||||||+|+|.++|..++.+|..+.
T Consensus 796 WTDRIL~r~e~~~~l~Y~~~el~~SDHRPV~A~~~a~i~~Vd~~kk~~l 844 (1080)
T KOG0566|consen 796 WTDRILWRGEKLELLSYKRAELKTSDHRPVYAIFRAEIFEVDEQKKLRL 844 (1080)
T ss_pred chhhheeccccccccccccccccccCCCceEEEEEEEEEEEcHHHHHHH
Confidence 9999999999999999999999999999999999999999998776643
No 3
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=100.00 E-value=1.4e-75 Score=613.49 Aligned_cols=225 Identities=38% Similarity=0.691 Sum_probs=206.0
Q ss_pred CCeEEEEeechheeeeeeeeecccccccceeeEeEEEeeeccccccceEEEEEEEEcCEEEEEEeecCCCCCCCcCHHHH
Q 006204 385 SSYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKR 464 (657)
Q Consensus 385 ~~Y~~v~SkqMvGI~L~V~vR~~L~~~I~~v~vs~VgtGl~G~lGNKGaVsVr~~i~~Ts~cFVn~HLaAgek~~d~~rR 464 (657)
..|+++.+.+|+||+|+||+|.++.++|+++.+++|++|++|.+||||||+|+|.+.+++||||||||++|+++ .++|
T Consensus 80 ~~Y~~v~~~~l~gi~l~vf~~~~~~~~i~~v~~~~v~~G~~~~~~nKG~v~i~~~~~~~~~~fv~~HL~a~~~~--~~~R 157 (310)
T smart00128 80 GQYNVLAKVRLVGILVLVFVKANHLVYIKDVETFTVKTGMGGLWGNKGAVAVRFKLSDTSFCFVNSHLAAGASN--VEQR 157 (310)
T ss_pred CceEEEeeeeecceEEEEEEehhhcCccceeEeeeeeccccceeecCceEEEEEEEcCcEEEEEeeccccccch--hhhh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999875 6799
Q ss_pred HHHHHHHHHhcCCCCCcCCCCCcccCCcceEEEeCccCccccCCh-HHHHHHHhhhcHHHHHhhhHhHHHHhcCCcccCc
Q 006204 465 NADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINLPY-EKTRELISKKQWSKLAESDQLLRELRKGRAFDGW 543 (657)
Q Consensus 465 N~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfW~GDLNYRI~l~~-~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf 543 (657)
|+|+.+|++.+.|+... ...+.+||++||||||||||++++ ++++++|+.++|+.|+++|||+.+++++.+|.||
T Consensus 158 ~~~~~~I~~~~~f~~~~----~~~~~~~d~~f~~GDlNyRi~~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~~f 233 (310)
T smart00128 158 NQDYKTILRALSFPERA----ELSQFDHDVVFWFGDLNFRLDSPSYEEVRRKISKKEFDDLLEKDQLNRQKEAGKVFKGF 233 (310)
T ss_pred HHHHHHHHHhcCCCCCc----cccccccceEEEecCcceeecCCCHHHHHHHHhhCcHHHHhhhhhHHHHhhcccccCcC
Confidence 99999999999886421 112678999999999999999988 8999999999999999999999999999999999
Q ss_pred ccCCcccCCCcccc-cCCccccCCCCCCCCCCCccccceeecc--CCceEee-eec-cccCCCCCCCceeEEEEEEEEeC
Q 006204 544 SEGTLIFAPTYKYE-LNSEKYYGEDPKVGRRNPSWCDRILSYG--KGMRLLN-YRR-NEIKMSDHRPVTATYMAEVEVFS 618 (657)
Q Consensus 544 ~Eg~I~FpPTYKy~-~~sd~Y~~~~~~~kkR~PAWCDRIL~~g--~gi~~l~-Y~s-~el~~SDHRPV~A~F~v~V~v~~ 618 (657)
+|++|+|||||||+ .|++.|++ ++|+|+|||||||||+. .++.++. |.+ .++.+||||||+|.|.+.|..++
T Consensus 234 ~E~~I~F~PTYK~~~~~t~~Yd~---~~k~R~PsWcDRIL~~~~~~~~~~~~~Y~s~~~~~~SDHkPV~~~f~v~~~~~~ 310 (310)
T smart00128 234 QEGPITFPPTYKYDSVGTETYDT---SEKKRVPAWCDRILYRSNGPNLIQLSEYHSGMELTTSDHKPVFATFRLKVTAVD 310 (310)
T ss_pred ccCCcCCCCCeeecCCCCccccC---cccccCcchhheehhhccCCCceecccccCCCccCCcCcccccEEEEEEEEecC
Confidence 99999999999999 99999985 45789999999999994 4566665 977 58999999999999999997653
No 4
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=9.5e-64 Score=532.57 Aligned_cols=313 Identities=36% Similarity=0.597 Sum_probs=280.3
Q ss_pred hhhhcccchhhcccceeeeEEEEEeeeeCCCCCCCCCCCcccccCC----CCCCCEEEEeeeeeeecCCCcccccCCCCc
Q 006204 92 RIRRRKSETFRAQYINTKEVRICVGTWNVGGKLPPDDLDIDDWIDM----NEPADIYVLGLQEIVPLTAGNIFGAEDSRP 167 (657)
Q Consensus 92 ~~~~~~~e~~r~~y~~~~~~rifvGTwNV~G~~p~~~~dL~~WL~~----~~~~DIYvlGfQEiV~Lna~~vl~~ed~~~ 167 (657)
.++.++++ |+-.+++.||++|+|++|+.|. .++..||++ .+.+|+||+||||+|+|+++.||+++....
T Consensus 16 ~l~~~~sk-----~~~~~~~~~f~~~~n~~~~~~k--~~~k~~lfP~~~~~~~~dlyVvGlQEvv~lt~~sils~~p~~r 88 (460)
T COG5411 16 VLRQRRSK-----YVIEKDVSIFVSTFNPPGKPPK--ASTKRWLFPEIEATELADLYVVGLQEVVELTPGSILSADPYDR 88 (460)
T ss_pred HHHHHhhh-----heeecceeeEeccccCCCCCch--hhhhhhcccccccccccceEEeccceeeeccchhhccCCcccc
Confidence 45555554 9999999999999999998774 478999997 346899999999999999999999875444
Q ss_pred hhhHHHHHHHHhcccCCCCCcccccCCCCCCCCCCCCCCCcchhhhhcccCCCCCCCccccCCCCCCCCcccCCCccccc
Q 006204 168 VSKWENIIRDTLNRIRHTTGRVKSLSDPPSPSKFKPSEDIPDIEEEITHESDSDVGEEVYPLDDENNGFDEVNDKPVKMF 247 (657)
Q Consensus 168 ~~~W~~~i~~aLn~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (657)
...|++.+-.+||.. .
T Consensus 89 l~~wes~~~~~Ln~~-~--------------------------------------------------------------- 104 (460)
T COG5411 89 LRIWESKVLDCLNGA-Q--------------------------------------------------------------- 104 (460)
T ss_pred cchhHHHHHHHhccc-c---------------------------------------------------------------
Confidence 578888777777651 1
Q ss_pred ccccccccccccccCCcchhhcccccCCCccchhhhhhhcccccCCCCcchhccccccccccccccccCCCCCCCCcccc
Q 006204 248 TNYEVSACADSAKLDMPAENNLQRHFSSPKRFDRLYCLRMEESKGNVEAPAVQYNGRLTKMLSGSERIGLSWPEPPLNLL 327 (657)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~r~~~~~~e~~~~~~ 327 (657)
T Consensus 105 -------------------------------------------------------------------------------- 104 (460)
T COG5411 105 -------------------------------------------------------------------------------- 104 (460)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCccccccccccccccccccCCCCCcccchhHHHHHHhhhHHHHHhhcCCCCeEEEEeechheeeeeeeeecc
Q 006204 328 TQKVLERPNSLKTVKSFKTSNSFRRYSSFKPAVDDMSSELALLAEIDIETLMKRKRRSSYVRMVSKQMVGIFLTIWVRRS 407 (657)
Q Consensus 328 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~SkqMvGI~L~V~vR~~ 407 (657)
...+|.++.+.||.|++|.||.+.+
T Consensus 105 -------------------------------------------------------~~eky~~l~s~q~~~~~~~vf~~~~ 129 (460)
T COG5411 105 -------------------------------------------------------SDEKYSLLRSPQLGGILLRVFSLAT 129 (460)
T ss_pred -------------------------------------------------------cCCceEEecchhccCcceEEeeecc
Confidence 0136777888899999999999999
Q ss_pred cccccceeeEeEEEeeeccccccceEEEEEEEEcCEEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCcCCCCCc
Q 006204 408 LRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPK 487 (657)
Q Consensus 408 L~~~I~~v~vs~VgtGl~G~lGNKGaVsVr~~i~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~ 487 (657)
-.+.+.+|....-+||++|..+|||+|+++|++..+.||||+|||+||..+ .++|+.||+.|.+.+.|+. ..
T Consensus 130 ~~~v~~~V~~~~~KtG~gg~s~nKGav~i~~~~~~t~~cFv~shlaag~~N--~eeR~~Dy~~I~~~i~f~~------g~ 201 (460)
T COG5411 130 NLPVVKPVSGTVKKTGFGGSSSNKGAVAIRFNYERTSFCFVNSHLAAGVNN--IEERIFDYRSIASNICFSR------GL 201 (460)
T ss_pred ccceeccccccccccccceecccccccceeEEeecCCcEEEecchhccccc--HHHHHHHHHHHHHheecCC------Cc
Confidence 999999999999999999999999999999999999999999999999875 5789999999999999963 35
Q ss_pred ccCCcceEEEeCccCccccCChHHHHHHHhhhc--HHHHHhhhHhHHHHhcCCcccCcccCCcccCCCcccccCCccccC
Q 006204 488 SICDHERIIWLGDLNYRINLPYEKTRELISKKQ--WSKLAESDQLLRELRKGRAFDGWSEGTLIFAPTYKYELNSEKYYG 565 (657)
Q Consensus 488 ~I~dhD~vfW~GDLNYRI~l~~~~v~~lI~~~~--~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~sd~Y~~ 565 (657)
.|.+||+|||+|||||||++.+++++..+...+ ...|+++|||..|+..|.+|.||+|..|+|||||||+.|+++|++
T Consensus 202 ~I~~hdti~w~GDlNyRVts~~e~v~~~~~~~~g~~~~l~~~DqL~~e~~~g~~f~~f~E~~i~FpPTYKfd~gt~~ydt 281 (460)
T COG5411 202 RIYDHDTIFWLGDLNYRVTSTNEEVRPEIASDDGRLDKLFEYDQLLWEMEVGNVFPGFKEPVITFPPTYKFDYGTDEYDT 281 (460)
T ss_pred eecccceEEEecccCceeecCchhcchhhhCCcchhhhhhhhhhHhhhhcccccccceecccccCCCceEeecCCccccc
Confidence 789999999999999999999999999988777 788999999999999999999999999999999999999999997
Q ss_pred CCCCCCCCCCccccceeeccCCceEeeeeccc-cCCCCCCCceeEEEEEEEEeChhh
Q 006204 566 EDPKVGRRNPSWCDRILSYGKGMRLLNYRRNE-IKMSDHRPVTATYMAEVEVFSPRK 621 (657)
Q Consensus 566 ~~~~~kkR~PAWCDRIL~~g~gi~~l~Y~s~e-l~~SDHRPV~A~F~v~V~v~~~~k 621 (657)
+ .|.|+||||||||+++...++++|.+.. +++||||||+|+|.+.+.++++.+
T Consensus 282 s---dk~RiPsWtDRIl~~s~~~~p~sY~sip~l~~SDHrPV~a~~~~~i~~~d~~~ 335 (460)
T COG5411 282 S---DKGRIPSWTDRILYKSEQLTPHSYSSIPHLMISDHRPVYATFRAKIKVVDPSK 335 (460)
T ss_pred c---ccccCCchhhhhhhhccccccccccccCceeecCCCeEEEEEecceEEeCcch
Confidence 4 4789999999999999889999999976 999999999999999999998754
No 5
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=99.96 E-value=5.4e-30 Score=263.28 Aligned_cols=173 Identities=21% Similarity=0.297 Sum_probs=130.0
Q ss_pred cccceEEEEEEEEcCEEEEEEeecCCCCCCCcC---------HHHHHHHHHHHHHhcCCCCCcCCCCCcccCCcceEEEe
Q 006204 428 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGD---------ELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWL 498 (657)
Q Consensus 428 lGNKGaVsVr~~i~~Ts~cFVn~HLaAgek~~d---------~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfW~ 498 (657)
++.||.+.+|++|+++.|||||+||.+++.+.+ ...|..++..|+.+ +. ..+..++++|||
T Consensus 65 wSRKGfmrtrw~i~~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r--~~--------~~~~~~~~lF~f 134 (356)
T PTZ00312 65 RSRKGFLLLSLRLGTVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAE--CS--------AFISPSDPLFIF 134 (356)
T ss_pred ccccceEEEEEEECCEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHH--Hh--------hccCCCCcEEEe
Confidence 789999999999999999999999999998753 35688999999975 22 123357899999
Q ss_pred CccCccccCChH-H-HH------HHHh------hhcHHHHHhhhHhHHHHhc-------------CCcccCcccCCcccC
Q 006204 499 GDLNYRINLPYE-K-TR------ELIS------KKQWSKLAESDQLLRELRK-------------GRAFDGWSEGTLIFA 551 (657)
Q Consensus 499 GDLNYRI~l~~~-~-v~------~lI~------~~~~~~LL~~DQL~~e~~~-------------g~vF~gf~Eg~I~Fp 551 (657)
||||||++...- + .+ ..++ ...|.+||++|||..|+++ .+.|.++.|.+|+||
T Consensus 135 GDfNyRld~~~~~e~L~ek~Ql~ve~~~g~~~~P~hf~~Lf~~dQl~rE~~~fd~e~q~l~~~va~~s~~eLaE~pI~Fp 214 (356)
T PTZ00312 135 GDFNVRLDGHNLLEWLKEKMQIDVKIEVKRVRAPDRFWELFTNPQTQGEIRRFDLELQRLMDVVAQQSGVELAEFAIRFP 214 (356)
T ss_pred ccceeeeccccHHHHhcccccccccccccccCChHHHHHHhcChhhhHHHhhhhhhhhhhhhhhhhhcccchhcccccCC
Confidence 999999995421 1 11 0111 2468899999999999985 677889999999999
Q ss_pred CCccccc-----CC-----------ccccCC----------------------C-----------------CCCCCCCCc
Q 006204 552 PTYKYEL-----NS-----------EKYYGE----------------------D-----------------PKVGRRNPS 576 (657)
Q Consensus 552 PTYKy~~-----~s-----------d~Y~~~----------------------~-----------------~~~kkR~PA 576 (657)
||||.-. +. ..|... + .+.+.|+||
T Consensus 215 PTYkrva~r~~~~~~~~~a~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~g~~d~i~~~~~l~~~ta~P~r~~~~~r~pa 294 (356)
T PTZ00312 215 PTYPRVAERTNTGAQIESAGANVAASVYGVKDVAAKLDNQQRKKAAKDLKGTADAILASVVLTRVTAIPHRNYCRDRLPA 294 (356)
T ss_pred CcchhhhhhcCCcchhhhcccccccchhcccccccccccccccchhhhccCccceeeeeeeeecccccCCcchhcccchh
Confidence 9999321 10 011100 0 123589999
Q ss_pred cccceeeccCC----------------------------ceEeeeeccccCCCCCCCceeEE
Q 006204 577 WCDRILSYGKG----------------------------MRLLNYRRNEIKMSDHRPVTATY 610 (657)
Q Consensus 577 WCDRIL~~g~g----------------------------i~~l~Y~s~el~~SDHRPV~A~F 610 (657)
|||||||...+ .....|.+.++..+||.+|...|
T Consensus 295 wcdrvl~~~~~~~~~~~~r~~~a~~~~~aa~~~~~~~~~~~~~~Y~s~~L~htDH~~V~~lF 356 (356)
T PTZ00312 295 WCDRVLWNPAGLELMTGDRSRSASPQSAAASKGDQASGQSCRYAYRSIDLIHTDHDGVFLLF 356 (356)
T ss_pred hhheeeechhhhhhhcCccccCCCcchhhhccCCcccchhhhheeeeeeeeeccCccceecC
Confidence 99999997422 22457889999999999999876
No 6
>KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.6e-28 Score=229.51 Aligned_cols=142 Identities=47% Similarity=0.720 Sum_probs=128.5
Q ss_pred CeEEEEeechheeeeeeeeecccccccceeeEeEEEeeeccccccceEEEEEEEEcCEEEEEEeecCCCCCCCcCHHHHH
Q 006204 386 SYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRN 465 (657)
Q Consensus 386 ~Y~~v~SkqMvGI~L~V~vR~~L~~~I~~v~vs~VgtGl~G~lGNKGaVsVr~~i~~Ts~cFVn~HLaAgek~~d~~rRN 465 (657)
.|++++++||+|+.+.+|++.++..++.+++++++++|+||++||||+|++++.++++.+|||||||++|.++.+ +.||
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~g~~~~~~nkg~v~is~~~~~~~~~~v~~hl~~~~~~~~-~~r~ 80 (145)
T KOG0565|consen 2 LYVVVASGRLVGIDLSVLLRRDLLDHSFNVRVSEVGTGIMGYLGNKGGVAISFVLSQTSFCFVISHLTSGVHKVY-ERRN 80 (145)
T ss_pred cEEEEeeeEEEEEEEEEEehhhhhhhhcccEEEEecceEEEEeCCCCeEEEEEEEcCceEEEEEecccccchhhH-HHhh
Confidence 699999999999999999999999999999999999999999999999999999999999999999999998754 3399
Q ss_pred HHHHHHHHhcCCCCCcCCCCCcccCC-cceEEEeCccCccccCC-hHHHHHHHhhhcHHHHHhhh
Q 006204 466 ADVHEIHRRTHFRSHSEIGFPKSICD-HERIIWLGDLNYRINLP-YEKTRELISKKQWSKLAESD 528 (657)
Q Consensus 466 ~D~~eIl~r~~F~~~~~~~~P~~I~d-hD~vfW~GDLNYRI~l~-~~~v~~lI~~~~~~~LL~~D 528 (657)
+|+.+|+.++.|........|..+.. ||.|||+||||||+..+ +.++..++..+.|+.|+++|
T Consensus 81 ~d~~~i~~~~~~~~~~~~~~~~~~~~~~D~v~w~GDlN~Rl~~~~~~~~~~~~~~~~~~~l~~~d 145 (145)
T KOG0565|consen 81 EDYQEILNGLRFPSVSPASEPVISDGEHDTVIWLGDLNYRLSGPSYLEVRTLISVKSRDGLLEKD 145 (145)
T ss_pred ccHHHHHhhccccccCcccccccccccccEEEEecceeeeecCcccccchhhhhhcchhhhhccC
Confidence 99999999999976544445555554 89999999999999988 88889999999999888765
No 7
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=99.71 E-value=6.1e-18 Score=174.98 Aligned_cols=166 Identities=26% Similarity=0.395 Sum_probs=109.7
Q ss_pred cccceEEEEEEEEcCEEEEEEeecCCCCCCCc---------CHHHHHHHHHHHHHhcCCCCCcCCCCCcccCCcceEEEe
Q 006204 428 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDG---------DELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWL 498 (657)
Q Consensus 428 lGNKGaVsVr~~i~~Ts~cFVn~HLaAgek~~---------d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfW~ 498 (657)
++.||-.-.++.|++..|.|||.||-+...+- .-.+|.+.+.-+|.++.= .-+..+.+|.|
T Consensus 154 ~~rkg~~~~r~~I~~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~----------~~~~~~~~fVf 223 (391)
T KOG1976|consen 154 NQRKGFLLARFRIHGKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDE----------EGLRNDAIFVF 223 (391)
T ss_pred hhhccccceeEEEcCceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHHh----------hccCceEEEEe
Confidence 57799999999999999999999997765432 124566666666665421 11345789999
Q ss_pred CccCccccCCh-----------HHH--------HHH---------------HhhhcHH-------------HHHhhhHhH
Q 006204 499 GDLNYRINLPY-----------EKT--------REL---------------ISKKQWS-------------KLAESDQLL 531 (657)
Q Consensus 499 GDLNYRI~l~~-----------~~v--------~~l---------------I~~~~~~-------------~LL~~DQL~ 531 (657)
|||||||+... +.+ .++ |+++.|+ .++.+|.-.
T Consensus 224 GdfNfrLds~s~ln~l~a~q~~qtv~~~d~~~vv~~ifr~esd~drkv~l~vEkk~FDyfnh~~f~d~~r~~~~~~dkEl 303 (391)
T KOG1976|consen 224 GDFNFRLDSTSLLNYLAATQLVQTVAKKDEDGVVESIFRVESDGDRKVTLTVEKKRFDYFNHDWFFDLGRGMVKRYDKEL 303 (391)
T ss_pred cccccccchHHHHHHHhcCCccchhhhcccCcceeeEEeecccCCceeEEEeehhhcchhhhHHHHHcCchhhhhcchHH
Confidence 99999998431 011 111 1222222 222222111
Q ss_pred HHHhcCCcccC-cccCCcccCCCcccccCCccccCCCCCCCCCCCccccceeeccCC----------ceEeeeec--ccc
Q 006204 532 RELRKGRAFDG-WSEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSWCDRILSYGKG----------MRLLNYRR--NEI 598 (657)
Q Consensus 532 ~e~~~g~vF~g-f~Eg~I~FpPTYKy~~~sd~Y~~~~~~~kkR~PAWCDRIL~~g~g----------i~~l~Y~s--~el 598 (657)
..|.. ..|..|.|||||.|..+... .+...+.|+||||||||+.... .+.+.|.. .|.
T Consensus 304 ------~nf~~kl~E~~i~FpPsypysed~~~---~E~~m~TrcPAWcDRILmn~~a~eLv~~~e~e~~~~~Y~~vg~e~ 374 (391)
T KOG1976|consen 304 ------ANFAFKLKEETIFFPPSYPYSEDDSG---KEEFMRTRCPAWCDRILMNDRANELVKHDEFEASGLYYGLVGEEK 374 (391)
T ss_pred ------HHHHHHHhheeecCCCCCCCCcCccc---hHHHHhccChHhhhhhhcCccHHHHhhccccCcccceeccccccc
Confidence 12333 68999999999999965432 1122468999999999997421 23467887 488
Q ss_pred CCCCCCCceeEEEE
Q 006204 599 KMSDHRPVTATYMA 612 (657)
Q Consensus 599 ~~SDHRPV~A~F~v 612 (657)
++-|||||+..|.+
T Consensus 375 c~GdHKpVfl~~~i 388 (391)
T KOG1976|consen 375 CVGDHKPVFLHASI 388 (391)
T ss_pred ccCCCcceEEEEee
Confidence 99999999998865
No 8
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=98.50 E-value=1.9e-06 Score=90.45 Aligned_cols=70 Identities=24% Similarity=0.357 Sum_probs=52.1
Q ss_pred cccccceEEEEEEEEcCEEEEEEeecCCCCCC----CcCHHHHHHHHHHHHHhcCCCCCcCCCCCcccCCcceEEEeCcc
Q 006204 426 GFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEK----DGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDL 501 (657)
Q Consensus 426 G~lGNKGaVsVr~~i~~Ts~cFVn~HLaAgek----~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfW~GDL 501 (657)
....+||.+.+++.+.+..+.|+|+||.+... ......|..++.+|.+.+.-. ..| ..+.+|++|||
T Consensus 116 d~~~~kg~l~a~i~~~g~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~~-----~~~----~~~pvIl~GDf 186 (283)
T TIGR03395 116 DNLSNKGFAYVKINKNGKKFHVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFIDSK-----NIP----KDETVLIGGDL 186 (283)
T ss_pred ccccCCceEEEEEecCCeEEEEEEeCCCCCcccccccccHHHHHHHHHHHHHHHhhc-----cCC----CCceEEEEeeC
Confidence 34678999999999999999999999998532 112467999999998753211 112 23569999999
Q ss_pred Ccc
Q 006204 502 NYR 504 (657)
Q Consensus 502 NYR 504 (657)
|..
T Consensus 187 N~~ 189 (283)
T TIGR03395 187 NVN 189 (283)
T ss_pred CCC
Confidence 984
No 9
>PRK05421 hypothetical protein; Provisional
Probab=98.33 E-value=9.3e-06 Score=83.95 Aligned_cols=126 Identities=17% Similarity=0.220 Sum_probs=76.5
Q ss_pred ceEEEEEEEE-cCEEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCcCCCCCcccCCcceEEEeCccCccccCCh
Q 006204 431 KGSVSVSMSI-HQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINLPY 509 (657)
Q Consensus 431 KGaVsVr~~i-~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfW~GDLNYRI~l~~ 509 (657)
||++.+.+.+ .+..|.++|+||.+.... ...|..++..|.+.+. ... ..+|++||||-.-....
T Consensus 135 r~~l~a~~~~~~g~~l~v~ntHl~~~~~~--~~~r~~q~~~l~~~~~-----~~~--------~p~Il~GDFN~~~~~~~ 199 (263)
T PRK05421 135 KSALITEYPLPNGRTLLVVNIHAINFSLG--VDVYSKQLEPIGDQIA-----HHS--------GPVILAGDFNTWSRKRM 199 (263)
T ss_pred ceeEEEEEEeCCCCEEEEEEECccccCcC--hHHHHHHHHHHHHHHH-----hCC--------CCEEEEcccccCcccch
Confidence 7888888888 566799999999865322 3468888888876431 011 24999999995111000
Q ss_pred HHHHHHHhhhcHHHHHhhhHhHHHHhcCCcccCcccCCcccCCCcccccCCccccCCCCCCCCCCCccccceeeccCCce
Q 006204 510 EKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSWCDRILSYGKGMR 589 (657)
Q Consensus 510 ~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~sd~Y~~~~~~~kkR~PAWCDRIL~~g~gi~ 589 (657)
.. +..+++ .. |+. ..+|++.-.+ ..+ ..| -|+||.. ++.
T Consensus 200 ~~---------l~~~~~------~~-------~l~--~~~~~~~~~~----~~~-------~~~----ID~I~~~--~~~ 238 (263)
T PRK05421 200 NA---------LKRFAR------EL-------GLK--EVRFTDDQRR----RAF-------GRP----LDFVFYR--GLN 238 (263)
T ss_pred HH---------HHHHHH------Hc-------CCC--ccCcCCcccc----ccc-------CCC----cceEEEC--CcE
Confidence 00 111111 00 111 1234433211 011 134 5999974 677
Q ss_pred EeeeeccccCCCCCCCceeEEEE
Q 006204 590 LLNYRRNEIKMSDHRPVTATYMA 612 (657)
Q Consensus 590 ~l~Y~s~el~~SDHRPV~A~F~v 612 (657)
...+...+...|||+||.|.|.+
T Consensus 239 v~~~~v~~~~~SDH~Pv~a~l~l 261 (263)
T PRK05421 239 VSKASVLVTRASDHNPLLVEFSL 261 (263)
T ss_pred EEEEEcCCCCCCCccCEEEEEEe
Confidence 77777777889999999999875
No 10
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=98.10 E-value=9.3e-07 Score=84.64 Aligned_cols=97 Identities=25% Similarity=0.285 Sum_probs=53.5
Q ss_pred heeeeeeeeecccccccceeeEeEEEeeec---cccccceEEEEEEEEcCEEEEEEeecCCCCCCCcCHHHHHHHHHHHH
Q 006204 396 VGIFLTIWVRRSLRRHIQNVRVSTVGVGVM---GFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIH 472 (657)
Q Consensus 396 vGI~L~V~vR~~L~~~I~~v~vs~VgtGl~---G~lGNKGaVsVr~~i~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl 472 (657)
.+..++|+.|.++...+........+.+.. ....+++.+.+++. +..|+++++|+.+... .|..+..+++
T Consensus 72 ~~~g~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~~~H~~~~~~-----~~~~~~~~~~ 144 (249)
T PF03372_consen 72 GGYGVAILSRSPIFSSVSYVFSLFSKPGIRIFRRSSKSKGIVPVSIN--GKPITVVNVHLPSSND-----ERQEQWRELL 144 (249)
T ss_dssp SSEEEEEEESSCCCEEEEEEEEEESSSTTCEEEEEEEEEEEEEEEEE--TEEEEEEEEETTSHHH-----HHHHHHHHHH
T ss_pred cCceEEEEEcccccccccccccccccccccccccccccccccccccc--ceEEEeeeccccccch-----hhhhhhhhhh
Confidence 466777888887654443333222222221 23456677777766 9999999999998532 2333333333
Q ss_pred HhcC-CCCCcCCCCCcccCCcceEEEeCccCccccCC
Q 006204 473 RRTH-FRSHSEIGFPKSICDHERIIWLGDLNYRINLP 508 (657)
Q Consensus 473 ~r~~-F~~~~~~~~P~~I~dhD~vfW~GDLNYRI~l~ 508 (657)
..+. +.. ..+ ...+|++||||.+..-.
T Consensus 145 ~~~~~~~~----~~~-----~~~~iv~GDfN~~~~~~ 172 (249)
T PF03372_consen 145 ARIQKIYA----DNP-----NEPVIVMGDFNSRPDSR 172 (249)
T ss_dssp HHHHHHHH----TSS-----CCEEEEEEE-SS-BSSG
T ss_pred hhhhhccc----ccc-----cceEEEEeecccCCccc
Confidence 3221 100 000 01599999999987754
No 11
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=97.57 E-value=0.00042 Score=72.47 Aligned_cols=55 Identities=16% Similarity=0.268 Sum_probs=42.3
Q ss_pred ceEEEEEEEEc-CEEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCcCCCCCcccCCcceEEEeCccC
Q 006204 431 KGSVSVSMSIH-QTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLN 502 (657)
Q Consensus 431 KGaVsVr~~i~-~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfW~GDLN 502 (657)
.|++-+.+... +..|-+||+||.=.+ ..|.++...|+...-+.. -..++++||||
T Consensus 119 Rgal~a~~~~~~g~~l~V~~~HL~l~~-----~~R~~Q~~~L~~~~~l~~------------~~p~vl~GDFN 174 (259)
T COG3568 119 RGALLAEIELPGGKPLRVINAHLGLSE-----ESRLRQAAALLALAGLPA------------LNPTVLMGDFN 174 (259)
T ss_pred ceeEEEEEEcCCCCEEEEEEEeccccH-----HHHHHHHHHHHhhccCcc------------cCceEEEccCC
Confidence 68888888884 679999999999654 469999999987433321 11599999999
No 12
>PRK11756 exonuclease III; Provisional
Probab=97.48 E-value=0.00045 Score=71.01 Aligned_cols=64 Identities=8% Similarity=0.187 Sum_probs=37.3
Q ss_pred ceEEEEEEEEcCEEEEEEeecCCCCCCCc---CHHHHHHHHHHHHHhcCCCCCcCCCCCcccCCcceEEEeCccCcc
Q 006204 431 KGSVSVSMSIHQTLFCFVCAHLTSGEKDG---DELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYR 504 (657)
Q Consensus 431 KGaVsVr~~i~~Ts~cFVn~HLaAgek~~---d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfW~GDLNYR 504 (657)
.+.+.+.+...+..|.|+|+|++.+.... ....|.+.+..|...+.-. ......+|++||||--
T Consensus 89 ~r~l~~~i~~~~g~~~v~n~y~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~----------~~~~~pvIl~GDfN~~ 155 (268)
T PRK11756 89 RRIIMATIPTPNGNLTVINGYFPQGESRDHPTKFPAKRQFYQDLQNYLETE----------LSPDNPLLIMGDMNIS 155 (268)
T ss_pred CCEEEEEEEcCCCCEEEEEEEecCCCCCCcchhHHHHHHHHHHHHHHHHHH----------hccCCCEEEEeecccC
Confidence 46778888776556999999998875321 1123444444443322100 0012349999999963
No 13
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.37 E-value=0.0013 Score=66.23 Aligned_cols=34 Identities=32% Similarity=0.539 Sum_probs=23.0
Q ss_pred EEeeeeCCCCCCCCCCCc-ccccCCCCCCCEEEEeeeee
Q 006204 114 CVGTWNVGGKLPPDDLDI-DDWIDMNEPADIYVLGLQEI 151 (657)
Q Consensus 114 fvGTwNV~G~~p~~~~dL-~~WL~~~~~~DIYvlGfQEi 151 (657)
.|.||||+|..... ..+ .+||... .||| |+|||+
T Consensus 2 ri~t~Nv~g~~~~~-~~~~~~~l~~~-~~DI--v~LQE~ 36 (255)
T TIGR00633 2 KIISWNVNGLRARL-HKLFLDWLKEE-QPDV--LCLQET 36 (255)
T ss_pred EEEEEecccHHHHh-hccHHHHHHhc-CCCE--EEEEec
Confidence 57899999953322 244 7777554 4587 678998
No 14
>PTZ00297 pantothenate kinase; Provisional
Probab=97.10 E-value=0.0049 Score=77.73 Aligned_cols=70 Identities=14% Similarity=0.148 Sum_probs=42.2
Q ss_pred cccceEEEEEEEEc----C-EEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcC--CCCCcCCCCCcccCCcceEEEeCc
Q 006204 428 IGNKGSVSVSMSIH----Q-TLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTH--FRSHSEIGFPKSICDHERIIWLGD 500 (657)
Q Consensus 428 lGNKGaVsVr~~i~----~-Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~--F~~~~~~~~P~~I~dhD~vfW~GD 500 (657)
..+||.+-+.+.+. + ..+.|+|+||.+.... ..|.+++.+|.+-+. .... ..-..+.....+|++||
T Consensus 130 ~~~RG~L~a~I~vp~~~g~~~~v~v~~tHL~~~~~~---~~R~~Q~~ql~~~i~~~i~~~---~~~~~~~~~~PvILaGD 203 (1452)
T PTZ00297 130 SVRRGCLFAEVEVPLAEGGSQRIVFFNVHLRQEDSL---PSTSSQVQETRRFVESVIANV---YEQNNDGAEIPFVIAGD 203 (1452)
T ss_pred ccccceEEEEEEccccCCCCceEEEEEeCCCCCCCc---chHHHHHHHHHHHHHHhhhhh---cccccCCCCCCEEEEee
Confidence 35789888888884 2 5799999999987543 235555655544211 1000 00011123356999999
Q ss_pred cCc
Q 006204 501 LNY 503 (657)
Q Consensus 501 LNY 503 (657)
||=
T Consensus 204 FN~ 206 (1452)
T PTZ00297 204 FNI 206 (1452)
T ss_pred CCC
Confidence 994
No 15
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=96.03 E-value=0.021 Score=66.37 Aligned_cols=63 Identities=17% Similarity=0.339 Sum_probs=44.0
Q ss_pred EEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcC-CCCCcCCCCCcccCCcceEEEeCccCccccCChHHHHHHHhhhc
Q 006204 443 TLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTH-FRSHSEIGFPKSICDHERIIWLGDLNYRINLPYEKTRELISKKQ 520 (657)
Q Consensus 443 Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~-F~~~~~~~~P~~I~dhD~vfW~GDLNYRI~l~~~~v~~lI~~~~ 520 (657)
..||++|+||..+.... ..|..+...|++.+. |.. ..+.| ||++||||- .+.+.+.++|..+.
T Consensus 417 ~~l~VaNTHL~~~p~~~--dvRl~Q~~~Ll~~l~~~~~--~~~~P--------vIlcGDFNS---~P~S~vy~lLt~G~ 480 (606)
T PLN03144 417 QLLCVANTHIHANQELK--DVKLWQVHTLLKGLEKIAA--SADIP--------MLVCGDFNS---VPGSAPHCLLATGK 480 (606)
T ss_pred cEEEEEEeeeccCCccc--hhHHHHHHHHHHHHHHHhh--cCCCc--------eEEeccCCC---CCCChhhhhhhcCC
Confidence 36999999997765533 357778887776542 210 11233 999999998 78888888887664
No 16
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.38 E-value=0.1 Score=56.15 Aligned_cols=132 Identities=23% Similarity=0.344 Sum_probs=72.7
Q ss_pred ccceEEEEEEEE-cCEEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCcCCCCCcccCCcceEEEeCccCccccC
Q 006204 429 GNKGSVSVSMSI-HQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINL 507 (657)
Q Consensus 429 GNKGaVsVr~~i-~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfW~GDLNYRI~l 507 (657)
+-||++.+.... +++.+..+|.|..-..-..+ ..| ++..++.+.+. +..-| +|+.||||- .
T Consensus 173 ~pk~~~~t~~~~~~g~~l~v~~lh~~~~~~~~~-~~~-~ql~~l~~~i~-----~~~gp--------vIlaGDfNa---~ 234 (309)
T COG3021 173 LPKSALATAYPLPDGTELTVVALHAVNFPVGTD-PQR-AQLLELGDQIA-----GHSGP--------VILAGDFNA---P 234 (309)
T ss_pred CCccceeEEEEcCCCCEEEEEeeccccccCCcc-HHH-HHHHHHHHHHH-----cCCCC--------eEEeecCCC---c
Confidence 467877776655 47899999999985433333 345 66666665431 11123 999999997 3
Q ss_pred ChHHH-HHHHhhhcHHHHHhhhHhHHHHhcCCcccCcccCCcccCCCcccccCCccccCCCCCCCCCCCcc-ccceeecc
Q 006204 508 PYEKT-RELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSW-CDRILSYG 585 (657)
Q Consensus 508 ~~~~v-~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~sd~Y~~~~~~~kkR~PAW-CDRIL~~g 585 (657)
+-..+ +.+ ..|...+.. .+.| -. +..|-|+ + ..|.+.| .|.|+++|
T Consensus 235 pWS~~~~R~------~~l~~~~~~---~~aG-----~~--~~~~~p~--------~--------~~r~~g~PIDhvf~rg 282 (309)
T COG3021 235 PWSRTAKRM------AALGGLRAA---PRAG-----LW--EVRFTPD--------E--------RRRAFGLPIDHVFYRG 282 (309)
T ss_pred chhHHHHHH------HHhcccccc---hhcc-----CC--ccccCHH--------H--------HhhccCCCcceeeecC
Confidence 32221 111 112111110 1111 11 1122221 1 1222333 79999998
Q ss_pred CCceEeeeeccccCCCCCCCceeEEEE
Q 006204 586 KGMRLLNYRRNEIKMSDHRPVTATYMA 612 (657)
Q Consensus 586 ~gi~~l~Y~s~el~~SDHRPV~A~F~v 612 (657)
.....-.+.+..-|||+||.+.|+.
T Consensus 283 --l~~~ka~rl~~~gSDH~PLLveF~~ 307 (309)
T COG3021 283 --LTVMKARRLPDRGSDHRPLLVEFSY 307 (309)
T ss_pred --cchhhhhhccccCCCCCceEEEEEe
Confidence 4444444556799999999999974
No 17
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=95.24 E-value=0.12 Score=52.63 Aligned_cols=34 Identities=32% Similarity=0.447 Sum_probs=23.0
Q ss_pred EEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006204 114 CVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 151 (657)
Q Consensus 114 fvGTwNV~G~~p~~~~dL~~WL~~~~~~DIYvlGfQEi 151 (657)
-|.||||+|..... ..+..||... .||| |+|||+
T Consensus 2 ri~t~Ni~g~~~~~-~~~~~~l~~~-~~DI--i~LQE~ 35 (254)
T TIGR00195 2 KIISWNVNGLRARL-HKGLAWLKEN-QPDV--LCLQET 35 (254)
T ss_pred EEEEEEcCcHHHhH-HHHHHHHHhc-CCCE--EEEEec
Confidence 57899999943221 2467888554 4587 558997
No 18
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=95.10 E-value=0.1 Score=57.20 Aligned_cols=201 Identities=20% Similarity=0.269 Sum_probs=112.0
Q ss_pred CeEEE-Eeechheeeeeeeeecccccccce-----eeEeEEEeeeccccccceEEEEEEEEcCEEEEEEeecCCCC---C
Q 006204 386 SYVRM-VSKQMVGIFLTIWVRRSLRRHIQN-----VRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSG---E 456 (657)
Q Consensus 386 ~Y~~v-~SkqMvGI~L~V~vR~~L~~~I~~-----v~vs~VgtGl~G~lGNKGaVsVr~~i~~Ts~cFVn~HLaAg---e 456 (657)
.|... -|.-| |-.|+||-|--+..-..+ -....+-.| .+.|-||--..++.+.+..+.+.|+||-|- +
T Consensus 68 Pysh~FHSGim-GaGL~vfSK~PI~~t~~~~y~lNG~p~~i~rG--DWf~GK~Vgl~~l~~~g~~v~~yntHLHAeY~rq 144 (422)
T KOG3873|consen 68 PYSHYFHSGIM-GAGLCVFSKHPILETLFHRYSLNGYPHAIHRG--DWFGGKGVGLTVLLVGGRMVNLYNTHLHAEYDRQ 144 (422)
T ss_pred chHHhhhcccc-cCceEEeecCchhhhhhhccccCCccceeeec--cccccceeEEEEEeeCCEEeeeeehhcccccccc
Confidence 44443 45555 889999988765432221 112222233 457889988889999999999999999874 2
Q ss_pred CCcCHHHHHHHHHHHHHhcCCCCCcCCCCCcccCCcceEEEeCccCcccc-CChHHHH--HHHhhhcHHHHHhhhHhHHH
Q 006204 457 KDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRIN-LPYEKTR--ELISKKQWSKLAESDQLLRE 533 (657)
Q Consensus 457 k~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfW~GDLNYRI~-l~~~~v~--~lI~~~~~~~LL~~DQL~~e 533 (657)
++...-.|-++.-++-+-++- .-...|.||..||||-+=. ++..-.. .++ ..|..|. -||.-..
T Consensus 145 ~D~YL~HR~~QAwdlaqfi~~----------t~q~~~vVI~~GDLN~~P~dl~~~ll~~a~l~--daw~~~h-~~q~e~~ 211 (422)
T KOG3873|consen 145 NDEYLCHRVAQAWDLAQFIRA----------TRQNADVVILAGDLNMQPQDLGHKLLLSAGLV--DAWTSLH-LDQCESD 211 (422)
T ss_pred CchhhhHHHHHHHHHHHHHHH----------HhcCCcEEEEecCCCCCccccceeeeeccchh--hhHhhhc-hhhhcCc
Confidence 333356788887777653211 0123588999999997532 3322111 122 2344432 2343222
Q ss_pred HhcCCcccCcccCCcccCCCcccccCCccccC-----CCCCCCCCCCccccceeeccCC--ceEeeee----c---cccC
Q 006204 534 LRKGRAFDGWSEGTLIFAPTYKYELNSEKYYG-----EDPKVGRRNPSWCDRILSYGKG--MRLLNYR----R---NEIK 599 (657)
Q Consensus 534 ~~~g~vF~gf~Eg~I~FpPTYKy~~~sd~Y~~-----~~~~~kkR~PAWCDRIL~~g~g--i~~l~Y~----s---~el~ 599 (657)
--++.-|++..||. |- +.--+.|.. ++| -++| .|.||+++.. ++...|. + .+..
T Consensus 212 ~~r~s~~~~l~~g~-----tc--d~~~N~y~~aqk~~ddp-~~~R----iDYvl~k~~~~~~~~a~~~~t~~rvP~~d~s 279 (422)
T KOG3873|consen 212 SFRLSEDKELVEGN-----TC--DSPLNCYTSAQKREDDP-LGKR----IDYVLVKPGDCNAKIAEVEFTEPRVPGEDCS 279 (422)
T ss_pred ccccchhhhhhcCC-----cc--cCcchhhhHHHhCCCCc-ccee----eeEEEEcCcceEEEeeeEEecCCCCCCCCCC
Confidence 22222244444554 11 111112221 011 1467 8999999743 2333332 2 2578
Q ss_pred CCCCCCceeEEEEEE
Q 006204 600 MSDHRPVTATYMAEV 614 (657)
Q Consensus 600 ~SDHRPV~A~F~v~V 614 (657)
+|||--+.|++.+.-
T Consensus 280 ~SDH~Al~a~L~I~~ 294 (422)
T KOG3873|consen 280 YSDHEALMATLKIFK 294 (422)
T ss_pred ccchhhheeEEEeec
Confidence 899999999997743
No 19
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=95.02 E-value=0.28 Score=51.05 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=25.2
Q ss_pred EEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006204 114 CVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 151 (657)
Q Consensus 114 fvGTwNV~G~~p~~~~dL~~WL~~~~~~DIYvlGfQEi 151 (657)
.+.||||||.--.....|.+||... .||| |+|||+
T Consensus 2 ki~swNVNgir~~~~~~~~~~l~~~-~~DI--iclQEt 36 (250)
T PRK13911 2 KLISWNVNGLRACMTKGFMDFFNSV-DADV--FCIQES 36 (250)
T ss_pred EEEEEEeCChhHhhhhhHHHHHHhc-CCCE--EEEEee
Confidence 5789999995332223588999654 4587 788999
No 20
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=94.71 E-value=0.054 Score=47.91 Aligned_cols=33 Identities=27% Similarity=0.216 Sum_probs=17.3
Q ss_pred CccccceeeccCCceE-eeeeccccCCCCCCCce
Q 006204 575 PSWCDRILSYGKGMRL-LNYRRNEIKMSDHRPVT 607 (657)
Q Consensus 575 PAWCDRIL~~g~gi~~-l~Y~s~el~~SDHRPV~ 607 (657)
.+--|+||....-... ..-.......|||+||+
T Consensus 86 ~s~iD~~~~s~~~~~~~~~~~~~~~~~SDH~~I~ 119 (119)
T PF14529_consen 86 GSRIDLILTSDNLLSWCVWVISSDDSGSDHCPIT 119 (119)
T ss_dssp EE--EEEEEECCGCCCEEEEEETTSSSSSB--EE
T ss_pred CceEEEEEECChHHhcCcEEEeCCCCCCCccCCC
Confidence 4448999987643222 11122467889999985
No 21
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=93.79 E-value=0.29 Score=51.94 Aligned_cols=55 Identities=20% Similarity=0.318 Sum_probs=36.4
Q ss_pred cceEEEEEEEEcCEEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCcCCCCCcccCCcceEEEeCccCc
Q 006204 430 NKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 503 (657)
Q Consensus 430 NKGaVsVr~~i~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfW~GDLNY 503 (657)
....+++++ .+ +.|.+.||.+...+ .|.+.+..|..- |.+ ..| +.-++++||||=
T Consensus 141 ~Rpilgi~i--~~--~~ffstH~~a~~~~----da~aiV~~I~~~--f~~----~~~-----~~pw~I~GDFNr 195 (271)
T PRK15251 141 SRPIIGIRI--GN--DVFFSIHALANGGT----DAGAIVRAVHNF--FRP----NMR-----HINWMIAGDFNR 195 (271)
T ss_pred ccceEEEEe--cC--eEEEEeeecCCCCc----cHHHHHHHHHHH--Hhh----ccC-----CCCEEEeccCCC
Confidence 455666665 23 78999999998432 378888888764 320 111 234899999994
No 22
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=93.76 E-value=0.16 Score=53.91 Aligned_cols=44 Identities=20% Similarity=0.287 Sum_probs=25.6
Q ss_pred EEEEEeecCCCCCCCcCHHHHHHHHHH-HHHhcCCCCCcCCCCCcccCCcceEEEeCccCc
Q 006204 444 LFCFVCAHLTSGEKDGDELKRNADVHE-IHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 503 (657)
Q Consensus 444 s~cFVn~HLaAgek~~d~~rRN~D~~e-Il~r~~F~~~~~~~~P~~I~dhD~vfW~GDLNY 503 (657)
.|.+|++|+.+.. ..++...+.. ++.... . . ..+-||++||||-
T Consensus 143 ~F~li~~H~~p~~----~~~e~~aL~~v~~~~~~--~---------~-~~~~villGDFNa 187 (276)
T smart00476 143 EFVIVPLHTTPEA----AVAEIDALYDVYLDVRQ--K---------W-GTEDVIFMGDFNA 187 (276)
T ss_pred cEEEEEecCChHH----HHHHHHHHHHHHHHHHH--h---------h-ccCCEEEEccCCC
Confidence 6899999999863 2234433222 222110 0 0 1244999999997
No 23
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=92.24 E-value=0.058 Score=56.06 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=30.6
Q ss_pred EEEEEEcCEEEEEEeecCCCCCCCc-CHHHH---HHHHHHHHHhcCCCCCcCCCCCcccCCcceEEEeCccCc
Q 006204 435 SVSMSIHQTLFCFVCAHLTSGEKDG-DELKR---NADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 503 (657)
Q Consensus 435 sVr~~i~~Ts~cFVn~HLaAgek~~-d~~rR---N~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfW~GDLNY 503 (657)
.|...+. .|.++|+..+.+.... ....| ..++.+.++.+ . ....+||+||||=
T Consensus 91 ~I~~~~~--~~~l~nvY~Pn~~~~~~r~~~K~~~~~~~~~~l~~l--~------------~~~~~Ii~GD~Nv 147 (250)
T PRK13911 91 VITCEFE--SFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKAL--E------------LKKPVIVCGDLNV 147 (250)
T ss_pred EEEEEEC--CEEEEEEEecCCCCCCcchHHHHHHHHHHHHHHHhc--c------------cCCCEEEEccccC
Confidence 3444443 5899999999986432 12222 23444444432 1 1235999999994
No 24
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=90.49 E-value=0.051 Score=57.25 Aligned_cols=33 Identities=36% Similarity=0.769 Sum_probs=24.2
Q ss_pred EEeeeeCCCC-CCCCCCCcccccCCCCCCCEEEEeeeee
Q 006204 114 CVGTWNVGGK-LPPDDLDIDDWIDMNEPADIYVLGLQEI 151 (657)
Q Consensus 114 fvGTwNV~G~-~p~~~~dL~~WL~~~~~~DIYvlGfQEi 151 (657)
.+-||||||. +.... +-+||....| || |++||+
T Consensus 2 kI~SwNVNgiRar~~~--~~~~l~~~~p-DV--lclQEt 35 (261)
T COG0708 2 KIASWNVNGLRARLKK--LLDWLEEEQP-DV--LCLQET 35 (261)
T ss_pred eeEEEehhhHHHHHHH--HHHHHHHhCC-CE--EEEEec
Confidence 4679999994 33232 8999966555 86 899999
No 25
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=90.13 E-value=0.96 Score=48.24 Aligned_cols=63 Identities=19% Similarity=0.346 Sum_probs=42.7
Q ss_pred EEEEEEEcCEEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCcCCCCCcccCCcceEEEeCccCcccc
Q 006204 434 VSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRIN 506 (657)
Q Consensus 434 VsVr~~i~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfW~GDLNYRI~ 506 (657)
..+...|.+..+||.++||.+-... ..+|.+++.+-+.+.+=- ...+| .-.||+.||+|.|=.
T Consensus 195 ~I~Ev~v~G~Kl~l~tsHLEStr~h--~P~r~~qF~~~~~k~~Ea---Ie~lP-----nA~ViFGGD~NlrD~ 257 (349)
T KOG2756|consen 195 LIVEVNVSGNKLCLMTSHLESTRGH--APERMNQFKMVLKKMQEA---IESLP-----NATVIFGGDTNLRDR 257 (349)
T ss_pred EEEEEeecCceEEEEeccccCCCCC--ChHHHHHHHHHHHHHHHH---HHhCC-----CceEEEcCcccchhh
Confidence 3456677888999999999997643 467888887666553210 00112 345999999998743
No 26
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=86.52 E-value=1.1 Score=51.00 Aligned_cols=94 Identities=18% Similarity=0.123 Sum_probs=58.9
Q ss_pred eeeeeecccccccceee--EeEEEeeeccccccceEEEEEEEEcCE---EEEEEeecCCCCCCCcCHHHHHHHHHHHHHh
Q 006204 400 LTIWVRRSLRRHIQNVR--VSTVGVGVMGFIGNKGSVSVSMSIHQT---LFCFVCAHLTSGEKDGDELKRNADVHEIHRR 474 (657)
Q Consensus 400 L~V~vR~~L~~~I~~v~--vs~VgtGl~G~lGNKGaVsVr~~i~~T---s~cFVn~HLaAgek~~d~~rRN~D~~eIl~r 474 (657)
++|+-+..+-+.+.+-. ..-.+.|++..-.-++.|+.+|++-+. .++..|+||--+...++ .|.+++.-||..
T Consensus 204 ~ai~w~~~~F~lv~~~~l~y~~~~~~l~n~~NV~lvv~l~f~~~~~~sq~ilVanTHLl~np~~~~--vrL~Q~~iiL~~ 281 (495)
T KOG2338|consen 204 VAILWHSAKFKLVNHSELNYFDSGSALANRDNVGLVVSLEFRLVDESSQGILVANTHLLFNPSRSD--VRLAQVYIILAE 281 (495)
T ss_pred EEEEEecccceecccchhhcccccchhhcccceeEEEEEEecccCcccCceEEEeeeeeecCcccc--hhhHHHHHHHHH
Confidence 34444555444443322 234556665533336677777766655 89999999999987776 488889888876
Q ss_pred cC-CCCCcCCCCCcccCCcceEEEeCccCc
Q 006204 475 TH-FRSHSEIGFPKSICDHERIIWLGDLNY 503 (657)
Q Consensus 475 ~~-F~~~~~~~~P~~I~dhD~vfW~GDLNY 503 (657)
+. |..... .|=.||++||||-
T Consensus 282 ~~~~~~~~~--------~~~pi~l~GDfNt 303 (495)
T KOG2338|consen 282 LEKMSKSSK--------SHWPIFLCGDFNT 303 (495)
T ss_pred HHHHHhhcc--------cCCCeEEecCCCC
Confidence 42 211000 3446999999994
No 27
>PRK11756 exonuclease III; Provisional
Probab=77.87 E-value=0.6 Score=48.11 Aligned_cols=34 Identities=24% Similarity=0.426 Sum_probs=22.8
Q ss_pred EEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006204 114 CVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 151 (657)
Q Consensus 114 fvGTwNV~G~~p~~~~dL~~WL~~~~~~DIYvlGfQEi 151 (657)
.|.||||+|..-. -..|.+||... .||| |+|||+
T Consensus 2 ri~T~Nv~g~~~~-~~~i~~~i~~~-~pDI--i~LQE~ 35 (268)
T PRK11756 2 KFVSFNINGLRAR-PHQLEAIIEKH-QPDV--IGLQET 35 (268)
T ss_pred EEEEEEcCCHHHH-HHHHHHHHHhc-CCCE--EEEEec
Confidence 4679999994211 11367888554 4687 669998
No 28
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=73.18 E-value=1.4 Score=44.40 Aligned_cols=53 Identities=15% Similarity=0.097 Sum_probs=30.3
Q ss_pred EEEEEEeecCCCCCCCcC--HHHHHHHHHHHHHhcCCCCCcCCCCCcccCCcceEEEeCccCccc
Q 006204 443 TLFCFVCAHLTSGEKDGD--ELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 505 (657)
Q Consensus 443 Ts~cFVn~HLaAgek~~d--~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfW~GDLNYRI 505 (657)
..+.++|+|++++...+. ...|.+.+..+.+.+. . .+.....+|++||||--.
T Consensus 100 ~~~~i~~vy~p~~~~~~~~~~~~r~~~~~~l~~~~~--~--------~~~~~~~~Il~GDFN~~~ 154 (255)
T TIGR00633 100 DGFTVVNVYVPNGGSRGLERLEYKLQFWDALFQYYE--K--------ELDAGKPVIICGDMNVAH 154 (255)
T ss_pred CCEEEEEEEccCCCCCCchhHHHHHHHHHHHHHHHH--H--------HHhcCCcEEEEeecccCC
Confidence 358899999988763322 2345555554443210 0 000123599999999744
No 29
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=68.81 E-value=1.7 Score=44.36 Aligned_cols=53 Identities=11% Similarity=0.191 Sum_probs=29.0
Q ss_pred EEEEEeecCCCCCCCc--CHHHHHHHHHHHHHhcCCCCCcCCCCCcccCCcceEEEeCccCcccc
Q 006204 444 LFCFVCAHLTSGEKDG--DELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRIN 506 (657)
Q Consensus 444 s~cFVn~HLaAgek~~--d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfW~GDLNYRI~ 506 (657)
.|.++|+|++++.... ....|.+-+..|...+. .... ....+|++||||-...
T Consensus 98 ~~~l~~~~~p~~~~~~~~~~~~r~~~~~~l~~~~~--~~~~--------~~~pvIi~GDfN~~~~ 152 (254)
T TIGR00195 98 SFLVINGYFPNGSRDDSEKLPYKLQWLEALQNYLE--KLVD--------KDKPVLICGDMNIAPT 152 (254)
T ss_pred CEEEEEEEccCCCCCCCccHHHHHHHHHHHHHHHH--HHHh--------cCCcEEEEeecccCCC
Confidence 3789999999864322 22334444444443221 0000 1134999999996443
No 30
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=60.66 E-value=7.2 Score=41.66 Aligned_cols=43 Identities=30% Similarity=0.524 Sum_probs=26.3
Q ss_pred EEEeeeeCCCCCCCCC----CCcccccCCCCCCCEEEEeeeeeeecCCC
Q 006204 113 ICVGTWNVGGKLPPDD----LDIDDWIDMNEPADIYVLGLQEIVPLTAG 157 (657)
Q Consensus 113 ifvGTwNV~G~~p~~~----~dL~~WL~~~~~~DIYvlGfQEiV~Lna~ 157 (657)
..|||||+.|-.-.++ .++..-|..++++|| |-|||+=.|.+.
T Consensus 25 ~~~~twn~qg~s~~~~~kw~~~v~~l~~~~~~~DI--la~QEags~p~~ 71 (271)
T PRK15251 25 YKVATWNLQGSSASTESKWNVNVRQLLSGENPADI--LMVQEAGSLPSS 71 (271)
T ss_pred ceEEEeecCCCCCCChhhhhhhHHHHhcCCCCCCE--EEEEecCCCccc
Confidence 4589999999643332 123333334567887 678999444433
No 31
>PRK05421 hypothetical protein; Provisional
Probab=58.10 E-value=5.6 Score=41.37 Aligned_cols=36 Identities=25% Similarity=0.316 Sum_probs=21.7
Q ss_pred EEEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006204 112 RICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 151 (657)
Q Consensus 112 rifvGTwNV~G~~p~~~~dL~~WL~~~~~~DIYvlGfQEi 151 (657)
.+-|-||||.+..-......-.++ ...||| |+|||+
T Consensus 43 ~lri~t~NI~~~~~~~~~~~l~~l--~~~~Di--I~LQEv 78 (263)
T PRK05421 43 RLRLLVWNIYKQQRAGWLSVLKNL--GKDADL--VLLQEA 78 (263)
T ss_pred ceeEEEEEccccccccHHHHHHHh--ccCCCE--EEEEec
Confidence 356779999986433211222333 444565 789999
No 32
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=28.16 E-value=43 Score=30.17 Aligned_cols=34 Identities=21% Similarity=0.458 Sum_probs=28.4
Q ss_pred eeeeeeecCCCcccccCCCCchhhHHHHHHHHhcc
Q 006204 147 GLQEIVPLTAGNIFGAEDSRPVSKWENIIRDTLNR 181 (657)
Q Consensus 147 GfQEiV~Lna~~vl~~ed~~~~~~W~~~i~~aLn~ 181 (657)
+|+ |+--+..-+|.+++..-...|.++|+++|+.
T Consensus 69 ~F~-i~t~~Rty~l~a~s~~e~~~Wi~ai~~v~~~ 102 (103)
T cd01251 69 GVT-LVTPERKFLFACETEQDRREWIAAFQNVLSR 102 (103)
T ss_pred eEE-EEeCCeEEEEECCCHHHHHHHHHHHHHHhcC
Confidence 777 7666666778898888888999999999986
No 33
>COG5629 Predicted metal-binding protein [Function unknown]
Probab=24.90 E-value=26 Score=37.62 Aligned_cols=21 Identities=33% Similarity=0.847 Sum_probs=16.4
Q ss_pred cccccCCcchhhhHhhccccc
Q 006204 9 RSKHHQPERTWAEICSCLGCL 29 (657)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~ 29 (657)
+|-..-|...|-||+|||+|-
T Consensus 101 ~s~ndlPse~W~El~DcWsCH 121 (321)
T COG5629 101 RSMNDLPSEGWEELIDCWSCH 121 (321)
T ss_pred hhhhhCchhhHHHHHHHHhhc
Confidence 344556788999999999993
No 34
>KOG3870 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.47 E-value=39 Score=38.18 Aligned_cols=15 Identities=47% Similarity=0.802 Sum_probs=12.6
Q ss_pred CCcceEEEeCccCcc
Q 006204 490 CDHERIIWLGDLNYR 504 (657)
Q Consensus 490 ~dhD~vfW~GDLNYR 504 (657)
...+.||+=||||||
T Consensus 350 ~~S~LvIFKGDLNYR 364 (434)
T KOG3870|consen 350 QKSSLVIFKGDLNYR 364 (434)
T ss_pred hhCcEEEEeccccHH
Confidence 346889999999995
No 35
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=20.34 E-value=45 Score=22.58 Aligned_cols=8 Identities=38% Similarity=0.924 Sum_probs=7.1
Q ss_pred EEEEeeee
Q 006204 112 RICVGTWN 119 (657)
Q Consensus 112 rifvGTwN 119 (657)
+|+|||+|
T Consensus 17 ~lWigT~~ 24 (24)
T PF07494_consen 17 NLWIGTYN 24 (24)
T ss_dssp CEEEEETS
T ss_pred CEEEEeCC
Confidence 69999987
No 36
>PF08053 Tna_leader: Tryptophanese operon leader peptide; InterPro: IPR012620 This entry defines the apparent leader peptides of tryptophanase operons in Escherichia coli, Vibrio cholerae, Photobacterium profundum, Haemophilus influenzae, and related species. It has been suggested that these peptides act in cis to alter the behaviour of the translating ribosome []. The tryptophanese (tna) operon leader peptide catalyses the degradation of L-tryptophan to indole, pyruvate and ammonia, enabling the bacteria to utilise tryptophan as a source of carbon, nitrogen and energy. The tna operon of Escherichia coli contains two major structural genes, tnaA and tnaB. Preceding tnaA in the tna operon is a 319 -nucleotide transcribed regulatory region that contains the coding region for a 24-residue leader peptide, TnaC. The RNA sequence in the vicinity of the tnaC stop codon is rich in Cytidylate residues which is required for efficient Rho -dependent termination in the leader region of the tna operon [].; GO: 0031554 regulation of transcription termination, DNA-dependent, 0031556 transcriptional attenuation by ribosome
Probab=20.08 E-value=17 Score=24.74 Aligned_cols=14 Identities=50% Similarity=0.807 Sum_probs=10.2
Q ss_pred HHHHHhcccCCCCC
Q 006204 37 VMRKWLNISTKDSD 50 (657)
Q Consensus 37 v~~Kwlni~~~~~d 50 (657)
|..|||||..|--|
T Consensus 8 vtskwfnidnkivd 21 (24)
T PF08053_consen 8 VTSKWFNIDNKIVD 21 (24)
T ss_pred EeeeeEeccCeecc
Confidence 45799999776544
Done!