Query 006204
Match_columns 657
No_of_seqs 367 out of 1206
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 18:47:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006204.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006204hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mtc_A Type II inositol-1,4,5- 100.0 8.8E-90 3E-94 720.0 32.9 304 105-619 2-308 (313)
2 4a9c_A Phosphatidylinositol-3, 100.0 2E-84 6.8E-89 680.5 30.7 227 386-615 80-314 (316)
3 1i9z_A Synaptojanin, phosphati 100.0 1.5E-81 5.2E-86 666.1 34.8 316 92-625 11-328 (347)
4 2xsw_A 72 kDa inositol polypho 100.0 9.6E-77 3.3E-81 631.7 32.1 228 386-618 86-326 (357)
5 2imq_X Salivary nitrophorin; f 100.0 2.5E-63 8.6E-68 509.8 23.9 205 386-614 72-282 (282)
6 4gz1_A Tyrosyl-DNA phosphodies 98.9 4.4E-08 1.5E-12 93.5 15.2 67 425-504 96-162 (256)
7 3teb_A Endonuclease/exonucleas 98.7 1.2E-07 4.2E-12 92.0 14.4 62 428-505 120-181 (266)
8 4fva_A 5'-tyrosyl-DNA phosphod 98.7 7.4E-08 2.5E-12 92.2 12.1 67 428-504 103-169 (256)
9 1zwx_A SMCL, sphingomyelinase- 98.6 2.4E-07 8.1E-12 92.5 13.3 69 428-505 128-200 (301)
10 4f1h_A Tyrosyl-DNA phosphodies 98.6 3.4E-07 1.1E-11 85.6 11.5 61 430-503 95-155 (250)
11 4gew_A 5'-tyrosyl-DNA phosphod 98.5 7.5E-07 2.6E-11 94.1 12.2 103 386-504 173-275 (362)
12 3g6s_A Putative endonuclease/e 98.4 8.5E-07 2.9E-11 87.1 10.9 139 429-612 114-260 (267)
13 3l1w_A Uncharacterized protein 98.4 6.6E-07 2.2E-11 87.2 9.9 136 428-612 107-251 (257)
14 3i41_A Beta-hemolysin; beta to 98.4 6.1E-07 2.1E-11 92.2 10.0 70 427-505 146-219 (317)
15 1ako_A Exonuclease III; AP-end 98.4 1.7E-06 5.9E-11 84.1 12.3 67 429-505 87-156 (268)
16 2ddr_A Sphingomyelin phosphodi 98.3 3.9E-06 1.3E-10 83.7 13.0 69 428-505 128-200 (306)
17 3mpr_A Putative endonuclease/e 98.2 9.2E-06 3.1E-10 82.0 12.4 61 429-503 118-181 (298)
18 2jc4_A Exodeoxyribonuclease II 97.6 0.00018 6E-09 69.3 10.0 53 444-506 98-152 (256)
19 1vyb_A ORF2 contains A reverse 97.6 0.00063 2.1E-08 64.5 13.0 53 433-504 97-149 (238)
20 2o3h_A DNA-(apurinic or apyrim 97.4 0.00015 5.1E-09 71.7 6.4 34 578-611 249-284 (285)
21 1wdu_A TRAS1 ORF2P; four-layer 97.4 0.00044 1.5E-08 67.3 9.6 57 430-504 102-158 (245)
22 2j63_A AP-endonuclease; base e 97.1 0.0019 6.6E-08 71.0 11.2 35 578-612 430-466 (467)
23 1hd7_A DNA-(apurinic or apyrim 97.1 0.00044 1.5E-08 70.5 5.7 51 444-505 164-215 (318)
24 2jc5_A Exodeoxyribonuclease; h 97.0 0.00026 9E-09 68.2 2.5 36 578-613 220-257 (259)
25 4b8c_D Glucose-repressible alc 96.8 0.00036 1.2E-08 80.0 2.6 74 441-519 545-619 (727)
26 2a40_B Deoxyribonuclease-1; WA 96.8 0.00062 2.1E-08 67.2 3.2 60 431-505 111-173 (260)
27 2voa_A AF_EXO, XTHA, exodeoxyr 96.6 0.0044 1.5E-07 59.8 8.2 34 578-611 217-256 (257)
28 3g91_A MTH0212, exodeoxyribonu 96.6 0.002 7E-08 63.1 5.5 36 113-151 4-39 (265)
29 1sr4_B CDT B, cytolethal diste 95.8 0.041 1.4E-06 56.4 10.7 60 430-503 121-180 (261)
30 3ngq_A CCR4-NOT transcription 95.6 0.021 7.2E-07 61.6 8.0 74 442-520 194-270 (398)
31 2ei9_A Non-LTR retrotransposon 95.6 0.049 1.7E-06 53.9 9.8 36 112-151 7-42 (240)
32 4fva_A 5'-tyrosyl-DNA phosphod 89.9 0.057 2E-06 51.1 -0.1 34 578-612 215-256 (256)
33 4f1h_A Tyrosyl-DNA phosphodies 87.3 0.11 3.7E-06 48.0 -0.1 37 112-151 3-43 (250)
34 4gz1_A Tyrosyl-DNA phosphodies 83.5 0.25 8.7E-06 46.5 0.4 35 578-612 211-254 (256)
35 4gew_A 5'-tyrosyl-DNA phosphod 81.1 0.34 1.2E-05 50.9 0.3 39 110-151 117-159 (362)
36 2ei9_A Non-LTR retrotransposon 79.8 0.2 7E-06 49.4 -1.8 57 429-505 76-132 (240)
37 2jc5_A Exodeoxyribonuclease; h 78.7 0.24 8.2E-06 47.3 -1.6 36 113-151 2-37 (259)
38 1ako_A Exonuclease III; AP-end 77.6 0.25 8.5E-06 47.5 -1.9 34 114-151 2-35 (268)
39 3g91_A MTH0212, exodeoxyribonu 75.8 0.23 7.9E-06 48.4 -2.7 35 578-612 221-257 (265)
40 1vyb_A ORF2 contains A reverse 72.1 0.44 1.5E-05 44.7 -1.7 33 578-610 204-237 (238)
41 2voa_A AF_EXO, XTHA, exodeoxyr 70.6 0.59 2E-05 44.7 -1.2 35 113-151 2-36 (257)
42 2o3h_A DNA-(apurinic or apyrim 70.6 0.42 1.4E-05 46.9 -2.3 37 112-151 28-64 (285)
43 2f1n_A CDT B, cytolethal diste 68.6 4.3 0.00015 41.7 4.6 59 430-503 130-188 (262)
44 3g6s_A Putative endonuclease/e 68.5 2 6.8E-05 41.5 2.0 36 112-151 3-47 (267)
45 1hd7_A DNA-(apurinic or apyrim 68.1 0.52 1.8E-05 47.7 -2.3 37 112-151 61-97 (318)
46 1sr4_B CDT B, cytolethal diste 66.5 1.7 5.8E-05 44.5 1.1 39 114-154 6-48 (261)
47 2f1n_A CDT B, cytolethal diste 65.9 1.4 4.9E-05 45.2 0.4 38 112-151 15-56 (262)
48 3l1w_A Uncharacterized protein 65.8 1.1 3.6E-05 43.2 -0.5 35 114-151 2-44 (257)
49 3teb_A Endonuclease/exonucleas 65.2 1.2 4.2E-05 42.5 -0.2 34 577-611 227-265 (266)
50 2j63_A AP-endonuclease; base e 64.0 0.65 2.2E-05 51.0 -2.7 37 112-151 149-188 (467)
51 2jc4_A Exodeoxyribonuclease II 63.6 0.65 2.2E-05 44.2 -2.5 34 114-151 2-35 (256)
52 3mpr_A Putative endonuclease/e 60.1 1.3 4.4E-05 44.2 -1.1 40 110-151 4-52 (298)
53 1wdu_A TRAS1 ORF2P; four-layer 58.6 0.87 3E-05 43.8 -2.6 38 575-612 204-243 (245)
54 2ddr_A Sphingomyelin phosphodi 54.0 8.7 0.0003 37.6 3.7 15 598-612 291-305 (306)
55 1zwx_A SMCL, sphingomyelinase- 46.1 7.2 0.00024 38.2 1.6 15 598-612 286-300 (301)
56 3i41_A Beta-hemolysin; beta to 33.1 5.7 0.00019 40.2 -1.5 37 112-151 29-74 (317)
No 1
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=100.00 E-value=8.8e-90 Score=719.97 Aligned_cols=304 Identities=34% Similarity=0.649 Sum_probs=279.2
Q ss_pred cceeeeEEEEEeeeeCCCCCCCCCCCcccccCC-CCCCCEEEEeeeeeeecCCCcccccCCCCchhhHHHHHHHHhcccC
Q 006204 105 YINTKEVRICVGTWNVGGKLPPDDLDIDDWIDM-NEPADIYVLGLQEIVPLTAGNIFGAEDSRPVSKWENIIRDTLNRIR 183 (657)
Q Consensus 105 y~~~~~~rifvGTwNV~G~~p~~~~dL~~WL~~-~~~~DIYvlGfQEiV~Lna~~vl~~ed~~~~~~W~~~i~~aLn~~~ 183 (657)
||..+++|||||||||||+.|+. +|.+||.. ..+||||||||||| +|++++++..+ +.....|+.+|+++|+.
T Consensus 2 yt~~~~~~i~v~TwNvng~~~~~--~l~~wL~~~~~~pDI~viGlQE~-~l~~~~~~~~~-~~~~~~W~~~i~~~L~~-- 75 (313)
T 3mtc_A 2 YTYIQNFRFFAGTYNVNGQSPKE--CLRLWLSNGIQAPDVYCVGFQEL-DLSKEAFFFHD-TPKEEEWFKAVSEGLHP-- 75 (313)
T ss_dssp CEEEEEEEEEEEEEECTTCCCCS--CTHHHHSSSCCCCSEEEEEEECS-CCSHHHHTTCC-CHHHHHHHHHHHHHSCT--
T ss_pred CceeeccEEEEEEEEcCCccCch--hHHHHhcccCCCCCeEEEEEEec-ccchhhhcccC-cchHHHHHHHHHHhcCC--
Confidence 89999999999999999998864 78999986 56799999999999 99999988654 55688999888876631
Q ss_pred CCCCcccccCCCCCCCCCCCCCCCcchhhhhcccCCCCCCCccccCCCCCCCCcccCCCcccccccccccccccccccCC
Q 006204 184 HTTGRVKSLSDPPSPSKFKPSEDIPDIEEEITHESDSDVGEEVYPLDDENNGFDEVNDKPVKMFTNYEVSACADSAKLDM 263 (657)
Q Consensus 184 ~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (657)
T Consensus 76 -------------------------------------------------------------------------------- 75 (313)
T 3mtc_A 76 -------------------------------------------------------------------------------- 75 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhhcccccCCCccchhhhhhhcccccCCCCcchhccccccccccccccccCCCCCCCCccccccccccCCCccccccc
Q 006204 264 PAENNLQRHFSSPKRFDRLYCLRMEESKGNVEAPAVQYNGRLTKMLSGSERIGLSWPEPPLNLLTQKVLERPNSLKTVKS 343 (657)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~r~~~~~~e~~~~~~~~~~~~~~~s~~~~~~ 343 (657)
T Consensus 76 -------------------------------------------------------------------------------- 75 (313)
T 3mtc_A 76 -------------------------------------------------------------------------------- 75 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccCCCCCcccchhHHHHHHhhhHHHHHhhcCCCCeEEEEeechheeeeeeeeecccccccceeeEeEEEee
Q 006204 344 FKTSNSFRRYSSFKPAVDDMSSELALLAEIDIETLMKRKRRSSYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVG 423 (657)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~SkqMvGI~L~V~vR~~L~~~I~~v~vs~VgtG 423 (657)
...|++|+|+|||||+|+||||+++.++|++|++++||||
T Consensus 76 ----------------------------------------~~~Y~~v~s~~lvGl~l~Vfvr~~~~~~i~~v~~~~v~tG 115 (313)
T 3mtc_A 76 ----------------------------------------DAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTG 115 (313)
T ss_dssp ----------------------------------------TSCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECS
T ss_pred ----------------------------------------CCCEEEEEEechhhhhhhhhhhhhhhhhcceeEeeeeccc
Confidence 0268999999999999999999999999999999999999
Q ss_pred eccccccceEEEEEEEEcCEEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCcCCCCCcccCCcceEEEeCccCc
Q 006204 424 VMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 503 (657)
Q Consensus 424 l~G~lGNKGaVsVr~~i~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfW~GDLNY 503 (657)
++|++||||||+|||.+++|+|||||||||||+++ .++||+|+.+|++++.|........|..|.+||+|||+|||||
T Consensus 116 ~~g~~GNKGaV~ir~~~~~ts~cFVnsHLaA~~~~--~~~Rn~d~~~I~~~l~f~~~~~~~~~~~i~~~d~vfw~GDLNy 193 (313)
T 3mtc_A 116 IMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEE--YERRNQDYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNY 193 (313)
T ss_dssp GGGTSTTSEEEEEEEEETTEEEEEEEEECCCSGGG--HHHHHHHHHHHHHHCCBCCSCSSSCCBCTTSSSEEEEEEECCC
T ss_pred ccccccCCceEEEEEEECCcEEEEEeeccCCCchH--HHHHHHHHHHHHHhcccCCCCCccCCccccCCceEEEeccccc
Confidence 99999999999999999999999999999999864 6899999999999999975433334678999999999999999
Q ss_pred ccc-CChHHHHHHHhhhcHHHHHhhhHhHHHHhcCCcccCcccCCcccCCCcccccCCccccCCCCCCCCCCCcccccee
Q 006204 504 RIN-LPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSWCDRIL 582 (657)
Q Consensus 504 RI~-l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~sd~Y~~~~~~~kkR~PAWCDRIL 582 (657)
||+ ++.++++++|+.++|+.||++|||+.|+++|++|.||+|++|+|||||||+.|++.|++ ++|+|+||||||||
T Consensus 194 Ri~~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~g~~f~gf~E~~I~F~PTYKyd~~s~~ydt---s~k~R~PsWcDRIL 270 (313)
T 3mtc_A 194 RIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGSDDWDT---SEKCRAPAWCDRIL 270 (313)
T ss_dssp CBCSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSCTTCBCCCCCSCCCBCBCTTSSSBCC---STTCCCCBCCEEEE
T ss_pred cccCCCHHHHHHHHhcCCHHHHHHhHHHHHHHHcCCccCCcccCCcCcCCCccCcCCCccccc---ccCEecccccceEE
Confidence 996 89999999999999999999999999999999999999999999999999999999986 46899999999999
Q ss_pred eccCCceEeeeecc-ccCCCCCCCceeEEEEEEEEeCh
Q 006204 583 SYGKGMRLLNYRRN-EIKMSDHRPVTATYMAEVEVFSP 619 (657)
Q Consensus 583 ~~g~gi~~l~Y~s~-el~~SDHRPV~A~F~v~V~v~~~ 619 (657)
|++++++++.|.+. ++++||||||+|.|.+++.|+.+
T Consensus 271 ~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~~~~~~~~~ 308 (313)
T 3mtc_A 271 WKGKNITQLSYQSHMALKTSDHKPVSSVFDIGVRVVAH 308 (313)
T ss_dssp EEESSEEEEEEEECTTCCSSSSCCEEEEEEEEEEEECC
T ss_pred EecCCeEEEeeeeccCccCCCccCeEEEEEEEEEEeec
Confidence 99999999999985 79999999999999999999865
No 2
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=100.00 E-value=2e-84 Score=680.47 Aligned_cols=227 Identities=32% Similarity=0.515 Sum_probs=195.6
Q ss_pred CeEEEEeechheeeeeeeeecccccccceeeEeEEEeeeccccccceEEEEEEEEcCEEEEEEeecCCCCCCCcCHHHHH
Q 006204 386 SYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRN 465 (657)
Q Consensus 386 ~Y~~v~SkqMvGI~L~V~vR~~L~~~I~~v~vs~VgtGl~G~lGNKGaVsVr~~i~~Ts~cFVn~HLaAgek~~d~~rRN 465 (657)
.|++|+++|||||+|+||||+++.++|++|++++||||++|++||||||+|+|.+++|+||||||||+||+++ .++||
T Consensus 80 ~Y~~v~s~~L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~~FVn~HLaAg~~~--~~~Rn 157 (316)
T 4a9c_A 80 DYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEK--TARRN 157 (316)
T ss_dssp CCEEEEEEEETTEEEEEEECGGGGGGEEEEEEEEEEEC------CEEEEEEEEEETTEEEEEEEEECCCSTTC--HHHHH
T ss_pred CEEEEEeeeehheeeeeEEeHHHhhhCcccccceeeeeeeEecCCCceEEEEEEECCcEEEEEEeccccCchH--HHHHH
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999874 78999
Q ss_pred HHHHHHHHhcCCCCCcCCCCCcccCCcceEEEeCccCccccCChHHHHHHHhhhcHHHHHhhhHhHHHHhcCCcccCccc
Q 006204 466 ADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSE 545 (657)
Q Consensus 466 ~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfW~GDLNYRI~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~E 545 (657)
+|+.+|++++.|.... ......+.+||||||+|||||||+++.++++++|++++|+.||++|||++|+++|++|.||+|
T Consensus 158 ~d~~~I~~~l~f~~~~-~~~~d~~~~~d~vfw~GDLNyRi~~~~~~v~~~i~~~~~~~Ll~~DQL~~e~~~g~~F~gf~E 236 (316)
T 4a9c_A 158 QNYLDILRLLSLGDRQ-LNAFDISLRFTHLFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSE 236 (316)
T ss_dssp HHHHHHHHHCCC--------CCTTTTSSEEEEEEECCCCBSSCHHHHHHHHHTTCCHHHHTTBHHHHHHHTTSSSTTCBC
T ss_pred HHHHHHHHhCCCCCCC-cCccccCCcCCeEEEcCCccCCcCCCHHHHHHHHhcccHHHHhccChHHHHHhcCCccccccc
Confidence 9999999999996321 111223467899999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCcccccCCc-cccCCC---CCCCCCCCccccceeeccC---CceEeeeec-cccCCCCCCCceeEEEEEEE
Q 006204 546 GTLIFAPTYKYELNSE-KYYGED---PKVGRRNPSWCDRILSYGK---GMRLLNYRR-NEIKMSDHRPVTATYMAEVE 615 (657)
Q Consensus 546 g~I~FpPTYKy~~~sd-~Y~~~~---~~~kkR~PAWCDRIL~~g~---gi~~l~Y~s-~el~~SDHRPV~A~F~v~V~ 615 (657)
++|+|||||||+.|++ .|+.+. .+.|+|+|||||||||++. .++++.|.+ .++++||||||+|.|.+.|.
T Consensus 237 ~~i~F~PTYKy~~~s~~~y~~~~~~~~~~k~R~PaWcDRIL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~v~V~ 314 (316)
T 4a9c_A 237 EEISFPPTYRYERGSRDTYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFEVGVT 314 (316)
T ss_dssp CCCCSCCCBCBCTTCSSCBCCC--------CCCCBCCEEEEEEECTTCCEEEEEEEECSSCCSSSSCCEEEEEEEECC
T ss_pred CCcccCCCccccCCCcccccccccccccccccCCcccceEEeccCCCCceEEeeecccCCcCCCCcccEEEEEEEEEE
Confidence 9999999999999995 575432 2346799999999999974 588999997 58999999999999998874
No 3
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=100.00 E-value=1.5e-81 Score=666.08 Aligned_cols=316 Identities=34% Similarity=0.590 Sum_probs=280.1
Q ss_pred hhhhcccchhhcccceeeeEEEEEeeeeCCCCCCCCCCCcccccCC--CCCCCEEEEeeeeeeecCCCcccccCCCCchh
Q 006204 92 RIRRRKSETFRAQYINTKEVRICVGTWNVGGKLPPDDLDIDDWIDM--NEPADIYVLGLQEIVPLTAGNIFGAEDSRPVS 169 (657)
Q Consensus 92 ~~~~~~~e~~r~~y~~~~~~rifvGTwNV~G~~p~~~~dL~~WL~~--~~~~DIYvlGfQEiV~Lna~~vl~~ed~~~~~ 169 (657)
+|++|..| |+..++++||||||||||+.|+ .||.+||.. ..+||||||||||||+|++++|++. |+.+..
T Consensus 11 ~l~~r~~e-----~~~~~~~~i~v~TwNv~g~~~~--~~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~~-~~~~~~ 82 (347)
T 1i9z_A 11 ELRKRENE-----FSEHKNVKIFVASYNLNGCSAT--TKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISA-DPAKRR 82 (347)
T ss_dssp HHHHTGGG-----TEEEEEEEEEEEEEECTTCCCC--SCCHHHHSCSSSCCCSEEEEEEECSSCCC-----CC-CHHHHH
T ss_pred HHHHHHHh-----cCCCCCcEEEEEeEecCCCCCc--hhHHHHhccccCCCCCEEEEEeEEeecCchhhhccc-CchhHH
Confidence 46666554 9999999999999999999874 579999986 3789999999999999999999976 566788
Q ss_pred hHHHHHHHHhcccCCCCCcccccCCCCCCCCCCCCCCCcchhhhhcccCCCCCCCccccCCCCCCCCcccCCCccccccc
Q 006204 170 KWENIIRDTLNRIRHTTGRVKSLSDPPSPSKFKPSEDIPDIEEEITHESDSDVGEEVYPLDDENNGFDEVNDKPVKMFTN 249 (657)
Q Consensus 170 ~W~~~i~~aLn~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (657)
.|+.+|+++|+...+
T Consensus 83 ~w~~~i~~~L~~~~~----------------------------------------------------------------- 97 (347)
T 1i9z_A 83 EWESCVKRLLNGKCT----------------------------------------------------------------- 97 (347)
T ss_dssp HHHHHHHHHHHHTCC-----------------------------------------------------------------
T ss_pred HHHHHHHHHHhhccc-----------------------------------------------------------------
Confidence 999999999986410
Q ss_pred ccccccccccccCCcchhhcccccCCCccchhhhhhhcccccCCCCcchhccccccccccccccccCCCCCCCCcccccc
Q 006204 250 YEVSACADSAKLDMPAENNLQRHFSSPKRFDRLYCLRMEESKGNVEAPAVQYNGRLTKMLSGSERIGLSWPEPPLNLLTQ 329 (657)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~r~~~~~~e~~~~~~~~ 329 (657)
T Consensus 98 -------------------------------------------------------------------------------- 97 (347)
T 1i9z_A 98 -------------------------------------------------------------------------------- 97 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCccccccccccccccccccCCCCCcccchhHHHHHHhhhHHHHHhhcCCCCeEEEEeechheeeeeeeeecccc
Q 006204 330 KVLERPNSLKTVKSFKTSNSFRRYSSFKPAVDDMSSELALLAEIDIETLMKRKRRSSYVRMVSKQMVGIFLTIWVRRSLR 409 (657)
Q Consensus 330 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~SkqMvGI~L~V~vR~~L~ 409 (657)
.+..|+++.++||+|++|+||+|.++.
T Consensus 98 -----------------------------------------------------~~~~Y~~v~s~~l~g~~L~Vfvr~~~~ 124 (347)
T 1i9z_A 98 -----------------------------------------------------SGPGYVQLRSGQLVGTALMIFCKESCL 124 (347)
T ss_dssp -----------------------------------------------------SSCCEEEEEEEEETTEEEEEEEEGGGG
T ss_pred -----------------------------------------------------CCCceeEEEEeeccceEEEEEEehHhh
Confidence 013799999999999999999999999
Q ss_pred cccceeeEeEEEeeeccccccceEEEEEEEEcCEEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCcCCCCCccc
Q 006204 410 RHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSI 489 (657)
Q Consensus 410 ~~I~~v~vs~VgtGl~G~lGNKGaVsVr~~i~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I 489 (657)
++|++|++++|+||++|++||||+|+++|.+++++||||||||+||+.+ ..+||+|+.+|++++.|.. +..|
T Consensus 125 ~~i~~v~~~~v~tG~~g~~gnKGav~vr~~~~~~~l~fvn~HLaa~~~~--~~~R~~d~~~I~~~l~f~~------~~~i 196 (347)
T 1i9z_A 125 PSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTN--YDERDHDYRTIASGLRFRR------GRSI 196 (347)
T ss_dssp GGEEEEEEEEEECCCC----CCEEEEEEEEETTEEEEEEEEECCCCSSC--HHHHHHHHHHHHHHCCCGG------GCCT
T ss_pred hhccceeeeeEeccCCCccCCCceEEEEEEECCeEEEEEEecCCCCCcc--HHHHHHHHHHHHHhhccCc------cccc
Confidence 9999999999999999999999999999999999999999999999865 4689999999999998853 3467
Q ss_pred CCcceEEEeCccCccccCChHHHHHHHhhhcHHHHHhhhHhHHHHhcCCcccCcccCCcccCCCcccccCCccccCCCCC
Q 006204 490 CDHERIIWLGDLNYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLIFAPTYKYELNSEKYYGEDPK 569 (657)
Q Consensus 490 ~dhD~vfW~GDLNYRI~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~sd~Y~~~~~~ 569 (657)
.+||++||+|||||||+++.+.++++|++++|+.||++|||+.++++|++|.||.|++|+|+|||||+.+++.|++ +
T Consensus 197 ~~~d~v~~~GDlNyRi~~~~~~v~~~i~~~~~~~Ll~~DqL~~~~~~~~~f~~f~E~~i~F~PTYK~~~~~~~yd~---s 273 (347)
T 1i9z_A 197 FNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIYDT---S 273 (347)
T ss_dssp TSSSEEEEEEECCCCBSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTSSCBCC---S
T ss_pred ccCccEEEecccccccCCCHHHHHHHHhhccHHHhhcccHHHHHHhcCCcccccccCCCCCCCCcccCCCCccccc---c
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999985 4
Q ss_pred CCCCCCccccceeeccCCceEeeeeccccCCCCCCCceeEEEEEEEEeChhhhhhh
Q 006204 570 VGRRNPSWCDRILSYGKGMRLLNYRRNEIKMSDHRPVTATYMAEVEVFSPRKLQRA 625 (657)
Q Consensus 570 ~kkR~PAWCDRIL~~g~gi~~l~Y~s~el~~SDHRPV~A~F~v~V~v~~~~klqr~ 625 (657)
+++|+|||||||||++ +++++.|.+.++++||||||+|.|.+.|+++++++.++.
T Consensus 274 ~k~R~PsWcDRIL~~~-~l~~~~Y~~~~~~~SDH~PV~a~f~~~v~~~~~~~~~~~ 328 (347)
T 1i9z_A 274 DKHRVPAWTDRILYRG-ELVPHSYQSVPLYYSDHRPIYATYEANIVKVDREKKKIL 328 (347)
T ss_dssp TTCCCCBCCEEEEEES-SCEEEEEEECCCCSSSBCCEEEEEEEEEEEECHHHHHHH
T ss_pred ccccCCcccceEEEeC-CEEEEEEEecCccCCCcCCceeEEEEEEecCCHHHHHHH
Confidence 6899999999999998 899999999889999999999999999999999876654
No 4
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=100.00 E-value=9.6e-77 Score=631.68 Aligned_cols=228 Identities=27% Similarity=0.475 Sum_probs=206.7
Q ss_pred CeEEEEeechheeeeeeeeecccccccceeeEeEEEeeeccccccceEEEEEEEEcCEEEEEEeecCCCCCCCcCHHHHH
Q 006204 386 SYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRN 465 (657)
Q Consensus 386 ~Y~~v~SkqMvGI~L~V~vR~~L~~~I~~v~vs~VgtGl~G~lGNKGaVsVr~~i~~Ts~cFVn~HLaAgek~~d~~rRN 465 (657)
.|+++.+.||+|++|+||+|.++.++|+++++++|+||++|++||||+|+|+|.+++|+||||||||+||+++ ..+||
T Consensus 86 ~Y~~v~s~~l~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gNKGav~vr~~~~~t~~~Fvn~HLaa~~~~--~~~Rn 163 (357)
T 2xsw_A 86 HYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTSGDGK--VAERL 163 (357)
T ss_dssp TEEEEEEEEETTEEEEEEEEGGGGGGBBCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEECCCSTTC--HHHHH
T ss_pred cccchhhhhhhhEEEEEEEchHHhhcCceeEecccccccccccccccEEEEEEEECCeEEEEEEEccCCCCch--HHHHH
Confidence 6888999999999999999999999999999999999999999999999999999999999999999999864 68999
Q ss_pred HHHHHHHHhcCCCCCcCCCC------CcccCCcceEEEeCccCccccCChHHHHHHHh---hhcHHHHHhhhHhHHHHhc
Q 006204 466 ADVHEIHRRTHFRSHSEIGF------PKSICDHERIIWLGDLNYRINLPYEKTRELIS---KKQWSKLAESDQLLRELRK 536 (657)
Q Consensus 466 ~D~~eIl~r~~F~~~~~~~~------P~~I~dhD~vfW~GDLNYRI~l~~~~v~~lI~---~~~~~~LL~~DQL~~e~~~ 536 (657)
+|+.+|++++.|+....... ...+.+||+|||+|||||||++++++++++|+ .++|+.|+++|||+.++++
T Consensus 164 ~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~~~~~~v~~~i~~~~~~~~~~Ll~~DQL~~~~~~ 243 (357)
T 2xsw_A 164 LDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSGGRTVVDALLCQGLVVDVPALLQHDQLIREMRK 243 (357)
T ss_dssp HHHHHHHHHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBSSCHHHHHHHHC---CCCHHHHHTTBHHHHHHHH
T ss_pred HHHHHHHHHhcccccccccccccccccccccccceEEEecccCcccccchHHHHHHHhhcchhhHHHHHhcChhHHHHhc
Confidence 99999999999964211111 12345799999999999999999999999996 4789999999999999999
Q ss_pred CCcccCcccCCcccCCCcccccCCccccCCCCCCCCCCCccccceeecc---CCceEeeeec-cccCCCCCCCceeEEEE
Q 006204 537 GRAFDGWSEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSWCDRILSYG---KGMRLLNYRR-NEIKMSDHRPVTATYMA 612 (657)
Q Consensus 537 g~vF~gf~Eg~I~FpPTYKy~~~sd~Y~~~~~~~kkR~PAWCDRIL~~g---~gi~~l~Y~s-~el~~SDHRPV~A~F~v 612 (657)
|++|.||+|++|+|||||||+.|++.|++ ++|+|+|||||||||++ .+++++.|.+ .++++||||||+|.|.+
T Consensus 244 g~~F~gf~E~~I~F~PTYKy~~~t~~Ydt---s~k~R~PaWcDRIL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~v 320 (357)
T 2xsw_A 244 GSIFKGFQEPDIHFLPSYKFDIGKDTYDS---TSKQRTPSYTDRVLYRSRHKGDICPVSYSSCPGIKTSDHRPVYGLFRV 320 (357)
T ss_dssp TSSSTTCBCCCCCSCCCBCBCTTSSSBCC---STTCCCCBCCEEEEEEESSTTSEEEEEEEECTTCCSSSSCCEEEEEEE
T ss_pred cccccCccccCCCCCCCccccCCCccccc---cCCCCCCcccceEEEecCCCCceEEEEeEecccccCCCcCCceeEEEE
Confidence 99999999999999999999999999985 46899999999999996 4689999998 48999999999999999
Q ss_pred EEEEeC
Q 006204 613 EVEVFS 618 (657)
Q Consensus 613 ~V~v~~ 618 (657)
.|+...
T Consensus 321 ~v~~~~ 326 (357)
T 2xsw_A 321 KVRPGR 326 (357)
T ss_dssp ECCCCC
T ss_pred EEecCC
Confidence 997654
No 5
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=100.00 E-value=2.5e-63 Score=509.79 Aligned_cols=205 Identities=22% Similarity=0.430 Sum_probs=184.7
Q ss_pred CeEEEEe--echheeeeeeeeecccccccceeeEeEEEeeeccccccceEEEEEEEEcCEEEEEEeecCCCCCCCcCHHH
Q 006204 386 SYVRMVS--KQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELK 463 (657)
Q Consensus 386 ~Y~~v~S--kqMvGI~L~V~vR~~L~~~I~~v~vs~VgtGl~G~lGNKGaVsVr~~i~~Ts~cFVn~HLaAgek~~d~~r 463 (657)
.|+++.+ .+|+|++|+||+|.++.++|+++.+ +|++|.+||||+|.++|.+++++||||||||++++.+ ..+
T Consensus 72 ~Y~~v~~~~~~~~G~~l~vf~k~~~~~~i~~~~~----~~~~g~~g~kGav~~r~~~~~~~~~fvn~HL~~~~~~--~~~ 145 (282)
T 2imq_X 72 GYTKLKNTITETMGLTVYCLEKHLDQNTLKNETI----IVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVT--STN 145 (282)
T ss_dssp TEEEEEEEECSSEEEEEEEEGGGCCTTTCCCEEE----EEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCC--TTS
T ss_pred ceEEEEeccCceeEEEEEEEEccccCccceeeee----ccccccccCCceEEEEEEECCEEEEEEEECCCCCCch--HHH
Confidence 5666666 7899999999999999988888765 5778999999999999999999999999999999643 457
Q ss_pred HHHHHHHHHHhcCCCCCcCCCCCcccCCcceEEEeCccCccccCChHHHHHHHhhhcHHHHHhhhHhHHHHhcCCcccCc
Q 006204 464 RNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGW 543 (657)
Q Consensus 464 RN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfW~GDLNYRI~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf 543 (657)
|++|+..|++++.+ +.++++|||+||||||++.+.++++++|++++|..|+++|||..+++ |.+|.||
T Consensus 146 R~~~~~~I~~~~~~-----------~~~~~~vi~~GDfN~r~~~~~~~~~~~i~~~~~~~l~~~DqL~~~~~-~~~f~~f 213 (282)
T 2imq_X 146 TKYAYDTRLDYSKK-----------DDPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLKKAKE-QKLFDGW 213 (282)
T ss_dssp SSSSCCGGGCTTSS-----------SSCCSEEEEEEECSCCBCSCHHHHHHHHHTTCHHHHHTTBTHHHHHH-TTSSTTC
T ss_pred HHHHHHHHHHhhhc-----------cCccceEEEecccccccCCCHHHHHHHHhhccHHHHhhhhHHHHhhc-ccccccc
Confidence 99999999876533 34678999999999999999999999999999999999999999999 9999999
Q ss_pred ccCCcccCCCcccccCCccccCCCCCCCCCCCccccceeecc---CCceEeeeecc-ccCCCCCCCceeEEEEEE
Q 006204 544 SEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSWCDRILSYG---KGMRLLNYRRN-EIKMSDHRPVTATYMAEV 614 (657)
Q Consensus 544 ~Eg~I~FpPTYKy~~~sd~Y~~~~~~~kkR~PAWCDRIL~~g---~gi~~l~Y~s~-el~~SDHRPV~A~F~v~V 614 (657)
+|++|+|+|||||+.+++.|+ .+|+|||||||||++ .+++++.|.+. ++.+|||+||+|.|.+++
T Consensus 214 ~e~~i~f~PTYk~~~~~~~y~------~~R~Psw~DrIl~~~~~~~~~~~~~y~~~~~~~~SDH~PV~a~f~~~~ 282 (282)
T 2imq_X 214 TEPQVTFKPTYKFKPNTDEYD------LSATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRVTL 282 (282)
T ss_dssp BCCCCCSCCCBCBCTTSSCBC------TTSCCBCCEEEEEECSSSCCEEEEEEEECTTCCSSSSCCEEEEEEEEC
T ss_pred ccCCcCCCCCccccCCCcccc------ccCCccccceEEEecCCCCceEeeEecCCCCCCCCCcCCeEEEEEEEC
Confidence 999999999999999999997 369999999999996 47999999997 899999999999998764
No 6
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=98.85 E-value=4.4e-08 Score=93.55 Aligned_cols=67 Identities=21% Similarity=0.328 Sum_probs=49.5
Q ss_pred ccccccceEEEEEEEEcCEEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCcCCCCCcccCCcceEEEeCccCcc
Q 006204 425 MGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYR 504 (657)
Q Consensus 425 ~G~lGNKGaVsVr~~i~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfW~GDLNYR 504 (657)
.+....++.+.+.+.+.+..|.++|+||.++... ...|.+++..|++.+.-. .....+|++||||..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~--~~~~~~q~~~~~~~l~~~-----------~~~~pvIl~GDfN~~ 162 (256)
T 4gz1_A 96 PNTKMMRNLLCVNVSLGGNEFCLMTSHLESTREH--SAERIRQLKTVLGKMQEA-----------PDSTTVIFAGDTNLR 162 (256)
T ss_dssp TTCSSCCEEEEEEEEETTEEEEEEECBCCCSGGG--HHHHHHHHHHHHHHHHHS-----------CTTSEEEEEEECCCC
T ss_pred CcccccceEEEEEEEeCCEEEEEEeecccccccc--hhhhhHHHHHHhhhhhhc-----------cCcceEEEeCccCCC
Confidence 3445668889999999999999999999987543 456778888887654210 112459999999973
No 7
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=98.74 E-value=1.2e-07 Score=92.03 Aligned_cols=62 Identities=19% Similarity=0.298 Sum_probs=48.5
Q ss_pred cccceEEEEEEEEcCEEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCcCCCCCcccCCcceEEEeCccCccc
Q 006204 428 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 505 (657)
Q Consensus 428 lGNKGaVsVr~~i~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfW~GDLNYRI 505 (657)
...+|.+.+.+.+.+..|+++|+||.+.... ...|..++..|++.+. ....+|++||||-.-
T Consensus 120 ~~~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~--~~~r~~q~~~l~~~~~--------------~~~~~il~GDfN~~~ 181 (266)
T 3teb_A 120 ISARRIVSITINYEGQDIEFYSCHMNLPNCE--TEDMGKNIQTILNRTQ--------------NSNLKILMGDFNTDA 181 (266)
T ss_dssp TTCCEEEEEEEEETTEEEEEEEEECCCTTCT--TCCHHHHHHHHHTSSC--------------SCCEEEEEEECCCCT
T ss_pred cccceEEEEEEEeCCeEEEEEEecCCCccCC--hHHHHHHHHHHHHHHh--------------cCCcEEEEeECCCCC
Confidence 4568999999999999999999999987432 2358888988876421 035699999999854
No 8
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=98.72 E-value=7.4e-08 Score=92.20 Aligned_cols=67 Identities=18% Similarity=0.071 Sum_probs=45.7
Q ss_pred cccceEEEEEEEEcCEEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCcCCCCCcccCCcceEEEeCccCcc
Q 006204 428 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYR 504 (657)
Q Consensus 428 lGNKGaVsVr~~i~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfW~GDLNYR 504 (657)
-+.++.+.+.+.+.+..|.++|+||.+.... ...|..++..++..+.... .......+|++||||.+
T Consensus 103 ~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~--~~~~~~q~~~~~~~~~~~~--------~~~~~~~vIl~GDfN~~ 169 (256)
T 4fva_A 103 GMYRTLQILEGSIGGLKVFLLNTHLESTREH--RPQRCAQFGFCMDKVREII--------AQNPGALVFFGGDLNLR 169 (256)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEEECCCSGGG--HHHHHHHHHHHHHHHHHHH--------HHSTTCEEEEEEECCCC
T ss_pred cccceeEEEEEEeCCeEEEEEEecCCCCCcc--hHHHHHHHHHHHHHhhhhh--------hccCCCcEEEeccCCCC
Confidence 4567888899999999999999999987543 3456666666654321100 00122459999999974
No 9
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=98.63 E-value=2.4e-07 Score=92.50 Aligned_cols=69 Identities=22% Similarity=0.228 Sum_probs=49.7
Q ss_pred cccceEEEEEEEEcCEEEEEEeecCCCCCCC----cCHHHHHHHHHHHHHhcCCCCCcCCCCCcccCCcceEEEeCccCc
Q 006204 428 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKD----GDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 503 (657)
Q Consensus 428 lGNKGaVsVr~~i~~Ts~cFVn~HLaAgek~----~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfW~GDLNY 503 (657)
..++|++.+.+.+.+..|.++|+||.++... .....|..++..|.+.+.= .. +.....+|++||||-
T Consensus 128 ~~~r~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~-----~~----~~~~~pvIl~GDfN~ 198 (301)
T 1zwx_A 128 LSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAK-----KN----IPKDEIIFIGGDLNV 198 (301)
T ss_dssp GBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHH-----HT----CCTTSEEEEEEECCC
T ss_pred ccCCCeEEEEEEECCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHH-----hC----CCCCCeEEEEeeCCC
Confidence 4578999999999999999999999987532 1345688888887764320 00 012346999999998
Q ss_pred cc
Q 006204 504 RI 505 (657)
Q Consensus 504 RI 505 (657)
.-
T Consensus 199 ~~ 200 (301)
T 1zwx_A 199 NY 200 (301)
T ss_dssp CT
T ss_pred CC
Confidence 44
No 10
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=98.57 E-value=3.4e-07 Score=85.65 Aligned_cols=61 Identities=13% Similarity=0.254 Sum_probs=44.9
Q ss_pred cceEEEEEEEEcCEEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCcCCCCCcccCCcceEEEeCccCc
Q 006204 430 NKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 503 (657)
Q Consensus 430 NKGaVsVr~~i~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfW~GDLNY 503 (657)
..+.+.+.+.+.+..|.++++||.+.... ...|..++.+|++.+.= ......+|++||||.
T Consensus 95 ~~~~~~~~~~~~~~~~~v~~~hl~~~~~~--~~~r~~q~~~~~~~l~~-----------~~~~~pvIl~GDfN~ 155 (250)
T 4f1h_A 95 MRNLLIAQVTFSGQKLYLMTSHLESCKNQ--SQERTKQLRVVLQKIKE-----------APEDAIVIFAGDTNL 155 (250)
T ss_dssp CCEEEEEEEEETTEEEEEEECBCCCSGGG--HHHHHHHHHHHHHHHHH-----------SCTTEEEEEEEECCC
T ss_pred cceEEEEEEecCCcEEEEecccccccccc--HHHHHHHHHHHHHHHHh-----------cCCCCCEEEEEecCC
Confidence 35567788888999999999999987543 45678888888775421 011245999999996
No 11
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=98.46 E-value=7.5e-07 Score=94.10 Aligned_cols=103 Identities=16% Similarity=0.080 Sum_probs=61.2
Q ss_pred CeEEEEeechheeeeeeeeecccccccceeeEeEEEeeeccccccceEEEEEEEEcCEEEEEEeecCCCCCCCcCHHHHH
Q 006204 386 SYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRN 465 (657)
Q Consensus 386 ~Y~~v~SkqMvGI~L~V~vR~~L~~~I~~v~vs~VgtGl~G~lGNKGaVsVr~~i~~Ts~cFVn~HLaAgek~~d~~rRN 465 (657)
.|......+-.+-.+.|+.|..+ ..+....+. ..+.....+++.+.+.+.+..|+++|+||.++.. ....|.
T Consensus 173 ~y~~~~~~~~~~~G~aIlsk~~i----~~~~~~~~~--~~~~~~~r~~l~~~i~~~g~~l~v~ntHL~s~~~--~~~~R~ 244 (362)
T 4gew_A 173 LYKIYYSNKGCQYYTAILVSKMF----DVEKHDVIH--FQNSGMYRTLQILEGSIGGLKVFLLNTHLESTRE--HRPQRC 244 (362)
T ss_dssp TEEEEESSTTSSSEEEEEEETTE----EEEEEEEEE--CTTCSSCCEEEEEEEEETTEEEEEEEEECCCSGG--GHHHHH
T ss_pred CceEEeCCCCCCceEEEEEeccC----ccccccccC--CCCCcccceEEEEEEEECCEEEEEEEecCCcccc--chhHHH
Confidence 34444444444555667777532 112222211 1122234678889999999999999999998753 245788
Q ss_pred HHHHHHHHhcCCCCCcCCCCCcccCCcceEEEeCccCcc
Q 006204 466 ADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYR 504 (657)
Q Consensus 466 ~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfW~GDLNYR 504 (657)
.++..++..+.-.. .......||++||||-+
T Consensus 245 ~Q~~~l~~~~~~~~--------~~~~~~pvIl~GDFN~~ 275 (362)
T 4gew_A 245 AQFGFCMDKVREII--------AQNPGALVFFGGDLNLR 275 (362)
T ss_dssp HHHHHHHHHHHHHH--------HHCTTCEEEEEEECCCC
T ss_pred HHHHHHHHHhHhhh--------hcCCCCCeEEeecCCCC
Confidence 88877765432100 00112459999999964
No 12
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=98.43 E-value=8.5e-07 Score=87.11 Aligned_cols=139 Identities=16% Similarity=0.110 Sum_probs=78.8
Q ss_pred ccceEEEEEEEE--cCEEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCcCCCCCcccCCcceEEEeCccCcccc
Q 006204 429 GNKGSVSVSMSI--HQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRIN 506 (657)
Q Consensus 429 GNKGaVsVr~~i--~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfW~GDLNYRI~ 506 (657)
.+++++.+.+.. .+..|+++|+||.+.. ...|..++..|++.+.= +.....+|++||||-
T Consensus 114 ~~R~~~~~~~~~~~~~~~~~v~~~Hl~~~~----~~~R~~q~~~l~~~l~~-----------~~~~~pvIl~GDfN~--- 175 (267)
T 3g6s_A 114 CVRIATWAKFKDKATGKIFMAVNTHFDHVG----EEARRQSALLIIRKIKE-----------IVGERPAVVTGDFNV--- 175 (267)
T ss_dssp SCCEEEEEEEEETTTCCEEEEEEEECCSSC----HHHHHHHHHHHHHHHHH-----------HTTTSCEEEEEECSS---
T ss_pred CcceEEEEEEEEcCCCCEEEEEEeCCCCCC----HHHHHHHHHHHHHHHHH-----------hcCCCCEEEEeECCC---
Confidence 467888888885 5789999999998753 45787777777665320 001234999999997
Q ss_pred CChHHHHHHHhhhcHHHHHhhhHhHHHHhcCCcccCcccCCccc--CCCcccccCCccccCCCCCCCCCCCccccceeec
Q 006204 507 LPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLIF--APTYKYELNSEKYYGEDPKVGRRNPSWCDRILSY 584 (657)
Q Consensus 507 l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~F--pPTYKy~~~sd~Y~~~~~~~kkR~PAWCDRIL~~ 584 (657)
.+.+.+...+..... ..-..|.+....+ .+||........ ....| .|+||..
T Consensus 176 ~~~~~~~~~l~~~~~----------------~l~d~~~~~~~~~~~~~T~~~~~~~~~------~~~~r----iD~I~~s 229 (267)
T 3g6s_A 176 TDASDAYETITTNEF----------------VMKDAYKTAARVTGVDYTFHDFARIPA------EDCEK----IDFIFVT 229 (267)
T ss_dssp CTTSHHHHHHHSSSS----------------CCEEHHHHCSEEEECSCSBCTTTTSCG------GGCCC----CEEEEEC
T ss_pred CCCCHHHHHhhcCCc----------------chhhhHhhhccccCCCCCEeCCCCCCC------CCCCc----EeEEEeC
Confidence 333333333322110 0111122211111 234422211100 01234 8999997
Q ss_pred cCCceEeeeecccc----CCCCCCCceeEEEE
Q 006204 585 GKGMRLLNYRRNEI----KMSDHRPVTATYMA 612 (657)
Q Consensus 585 g~gi~~l~Y~s~el----~~SDHRPV~A~F~v 612 (657)
+ +++...+..... ..|||.||.|....
T Consensus 230 ~-~~~~~~~~v~~~~~~~~~SDH~PV~a~~~~ 260 (267)
T 3g6s_A 230 P-QVLVKSCEIPAEVPEALLSDHNPQLADLEL 260 (267)
T ss_dssp T-TSEEEEEEECCCCSSSCCCSBCCEEEEEEE
T ss_pred C-CceEEEEEEecCCCCCCCCCcccEEEEEEe
Confidence 6 477777765332 46999999987654
No 13
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=98.43 E-value=6.6e-07 Score=87.25 Aligned_cols=136 Identities=21% Similarity=0.134 Sum_probs=79.5
Q ss_pred cccceEEEEEEEEc--CEEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCcCCCCCcccCCcceEEEeCccCccc
Q 006204 428 IGNKGSVSVSMSIH--QTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 505 (657)
Q Consensus 428 lGNKGaVsVr~~i~--~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfW~GDLNYRI 505 (657)
...++++.+.+.+. +..|.++|+||.+.. ...|..++..|++.+.- .+.. +.+|++||||-
T Consensus 107 ~~~r~~~~~~~~~~~~g~~~~v~~~Hl~~~~----~~~r~~q~~~l~~~i~~----------~~~~-~pvil~GDfN~-- 169 (257)
T 3l1w_A 107 GCPRIALWGLFKETTQNTPFLVINVHLDHIS----AHARLAGMTVILEELHD----------KIAQ-YPTLLMGDFNA-- 169 (257)
T ss_dssp SSCCEEEEEEEEETTCSSCEEEEEEECCSSC----HHHHHHHHHHHHHHTHH----------HHHH-SCEEEEEECCC--
T ss_pred cccceeEEEEEEEcCCCCEEEEEEeCCCCCC----HHHHHHHHHHHHHHHHH----------HcCC-CCEEEEeeCCC--
Confidence 45788899999884 678999999999863 35788888888875420 0001 15999999997
Q ss_pred cCChHHHHHHHhhhcHHHHHhhhHhHHHHhcCCcccCcccCC-cccCCCcccccCCccccCCCCC-CCCCCCccccceee
Q 006204 506 NLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGT-LIFAPTYKYELNSEKYYGEDPK-VGRRNPSWCDRILS 583 (657)
Q Consensus 506 ~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~-I~FpPTYKy~~~sd~Y~~~~~~-~kkR~PAWCDRIL~ 583 (657)
.+...+..++..+ | ..-|.... ....+||.-..+. .+. ...| .|+||.
T Consensus 170 -~~~~~~~~~l~~~-l------------------~d~~~~~~~~~~~~t~~~~~~~------~~~~~~~r----iD~i~~ 219 (257)
T 3l1w_A 170 -ESGEEVHQLVQKK-F------------------QDSKNLATHYGPRGTFQNFTYT------KPWAELEE----IDYIYV 219 (257)
T ss_dssp -CTTSHHHHHHTTT-C------------------EEGGGTSEEESCSCCBCTTCTT------CCGGGCBC----CEEEEE
T ss_pred -CCCcHHHHHhhhh-c------------------cchhhhhcccCCCCcccCCccc------CCCCCCCc----eeEEEE
Confidence 3333333333221 0 01111110 0122233111000 000 0134 799999
Q ss_pred ccCCceEeeeeccc-----cCCCCCCCceeEEEE
Q 006204 584 YGKGMRLLNYRRNE-----IKMSDHRPVTATYMA 612 (657)
Q Consensus 584 ~g~gi~~l~Y~s~e-----l~~SDHRPV~A~F~v 612 (657)
.+++...+.... ...|||.||.+.|.+
T Consensus 220 --~~~~~~~~~v~~~~~~~~~~SDH~pv~~~l~~ 251 (257)
T 3l1w_A 220 --KGWQVQQTASLTDSIDGRFPSDHFPLEAEVAG 251 (257)
T ss_dssp --ESEEEEEEEECCCCBTTBCSSSBCCEEEEEEE
T ss_pred --CCcEEEEEEEeccCcCCcccCCcceEEEEEEE
Confidence 667777776432 368999999999865
No 14
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=98.42 E-value=6.1e-07 Score=92.16 Aligned_cols=70 Identities=23% Similarity=0.238 Sum_probs=51.4
Q ss_pred ccccceEEEEEEEEcCEEEEEEeecCCCCCCC----cCHHHHHHHHHHHHHhcCCCCCcCCCCCcccCCcceEEEeCccC
Q 006204 427 FIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKD----GDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLN 502 (657)
Q Consensus 427 ~lGNKGaVsVr~~i~~Ts~cFVn~HLaAgek~----~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfW~GDLN 502 (657)
...+||.+.+.+.+.+..|.++|+||.+.... .....|..++..|.+.+.-. ..+ ....||++||||
T Consensus 146 ~~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~-----~~~----~~~pvIl~GDfN 216 (317)
T 3i41_A 146 NDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKK-----NIP----KDETVYIGGDLN 216 (317)
T ss_dssp GGBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHH-----TCC----TTSCEEEEEECC
T ss_pred cccCcceEEEEEEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHh-----ccC----CCCeEEEEeECC
Confidence 46789999999999999999999999986531 23578888998887653210 001 124599999999
Q ss_pred ccc
Q 006204 503 YRI 505 (657)
Q Consensus 503 YRI 505 (657)
-.-
T Consensus 217 ~~~ 219 (317)
T 3i41_A 217 VNK 219 (317)
T ss_dssp CCT
T ss_pred CCC
Confidence 844
No 15
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=98.41 E-value=1.7e-06 Score=84.05 Aligned_cols=67 Identities=7% Similarity=0.112 Sum_probs=46.0
Q ss_pred ccceEEEEEEEEcCEEEEEEeecCCCCCCCc---CHHHHHHHHHHHHHhcCCCCCcCCCCCcccCCcceEEEeCccCccc
Q 006204 429 GNKGSVSVSMSIHQTLFCFVCAHLTSGEKDG---DELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 505 (657)
Q Consensus 429 GNKGaVsVr~~i~~Ts~cFVn~HLaAgek~~---d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfW~GDLNYRI 505 (657)
.+++.+.+.+.+.+..|+++|+||.++.... ....|...+..|...+.-. ......+|++||||-..
T Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~r~~~~~~l~~~~~~~----------~~~~~~~Il~GDFN~~~ 156 (268)
T 1ako_A 87 AQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETE----------LKRDNPVLIMGDMNISP 156 (268)
T ss_dssp HHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHHHHH----------CCTTSCEEEEEECCCCC
T ss_pred cCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHHHHHHHHHHHHHHHHHh----------hhCCCCEEEEeECCCCC
Confidence 4678999999999899999999999886432 1234666666665543100 01134599999999743
No 16
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=98.33 E-value=3.9e-06 Score=83.72 Aligned_cols=69 Identities=20% Similarity=0.310 Sum_probs=48.2
Q ss_pred cccceEEEEEEEEcCEEEEEEeecCCCCCCC----cCHHHHHHHHHHHHHhcCCCCCcCCCCCcccCCcceEEEeCccCc
Q 006204 428 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKD----GDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 503 (657)
Q Consensus 428 lGNKGaVsVr~~i~~Ts~cFVn~HLaAgek~----~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfW~GDLNY 503 (657)
..++|++.+.+.+.+..|.++|+||.+.... .....|..++..|.+.+.- ...+ ....+|++||||-
T Consensus 128 ~~~r~~~~~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~-----~~~~----~~~pvil~GDfN~ 198 (306)
T 2ddr_A 128 LSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKN-----KNIP----NNEYVLIGGDMNV 198 (306)
T ss_dssp CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHH-----HTCC----TTSCEEEEEECCC
T ss_pred hcCCCeEEEEEEeCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHH-----hcCC----CCCEEEEEeeCCC
Confidence 3578999999999999999999999987421 1345788888887654320 0001 1245999999998
Q ss_pred cc
Q 006204 504 RI 505 (657)
Q Consensus 504 RI 505 (657)
.-
T Consensus 199 ~~ 200 (306)
T 2ddr_A 199 NK 200 (306)
T ss_dssp CC
T ss_pred Cc
Confidence 55
No 17
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=98.20 E-value=9.2e-06 Score=81.96 Aligned_cols=61 Identities=13% Similarity=0.078 Sum_probs=43.3
Q ss_pred ccceEEEEEEEE--cCEEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcC-CCCCcCCCCCcccCCcceEEEeCccCc
Q 006204 429 GNKGSVSVSMSI--HQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTH-FRSHSEIGFPKSICDHERIIWLGDLNY 503 (657)
Q Consensus 429 GNKGaVsVr~~i--~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~-F~~~~~~~~P~~I~dhD~vfW~GDLNY 503 (657)
-+++++.+.|.. .+..|+++|+||.+.. ...|.+++..|++.+. +.. . ....+|++||||-
T Consensus 118 ~~R~~~~~~~~~~~~g~~~~v~~~Hl~~~~----~~~R~~q~~~l~~~i~~~~~--~--------~~~pvIl~GDfN~ 181 (298)
T 3mpr_A 118 LPRICSWGHFKCKDTGFEFLFFNLHMDHIG----KKARVESAFLVQEKMKELGR--G--------KNLPAILTGDFNV 181 (298)
T ss_dssp SCCEEEEEEEEETTTCCEEEEEEEECCSSC----HHHHHHHHHHHHHHHHHTTT--T--------SCCCEEEEEECSS
T ss_pred cCceeEEEEEEEcCCCCEEEEEEecCCCCC----HHHHHHHHHHHHHHHHHHhc--C--------CCCcEEEEEeCCC
Confidence 367788888884 5789999999998642 3578888888776532 110 0 1234999999996
No 18
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=97.65 E-value=0.00018 Score=69.31 Aligned_cols=53 Identities=13% Similarity=0.083 Sum_probs=31.3
Q ss_pred EEEEEeecCCCCCCCcC--HHHHHHHHHHHHHhcCCCCCcCCCCCcccCCcceEEEeCccCcccc
Q 006204 444 LFCFVCAHLTSGEKDGD--ELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRIN 506 (657)
Q Consensus 444 s~cFVn~HLaAgek~~d--~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfW~GDLNYRI~ 506 (657)
.|.++|+||.++...+. ...|...+..|.+.+.- . +.....+|++||||-...
T Consensus 98 ~~~v~~~h~~~~~~~~~~~~~~r~~~~~~l~~~~~~-----~-----~~~~~~~il~GDFN~~~~ 152 (256)
T 2jc4_A 98 GVRVINVYCVNGEALDSPKFKYKEQWFAALTEFVRD-----E-----MTRHGKLVLLGDFNIAPA 152 (256)
T ss_dssp TEEEEEEECCCCCSTTSHHHHHHHHHHHHHHHHHHH-----H-----HTTCSSEEEEEECCCCCS
T ss_pred CEEEEEEEecCCCCCCcHhHHHHHHHHHHHHHHHHH-----H-----hcCCCCEEEEeECCCCCc
Confidence 69999999998765322 23355555555432210 0 001235999999997543
No 19
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=97.61 E-value=0.00063 Score=64.53 Aligned_cols=53 Identities=15% Similarity=0.107 Sum_probs=35.3
Q ss_pred EEEEEEEEcCEEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCcCCCCCcccCCcceEEEeCccCcc
Q 006204 433 SVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYR 504 (657)
Q Consensus 433 aVsVr~~i~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfW~GDLNYR 504 (657)
.+.+.+.+.+..|.++|+|++++.. . | -+.++++.+.- .+ ...+|++||||-.
T Consensus 97 ~i~~~~~~~~~~~~v~~~y~p~~~~----~-~--~~~~l~~~l~~-------~~-----~~~~Il~GDFN~~ 149 (238)
T 1vyb_A 97 YIMVKGSIQQEELTILNIYAPNTGA----P-R--FIKQVLSDLQR-------DL-----DSHTLIMGDFNTP 149 (238)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSSH----H-H--HHHHHHHHTTT-------TC-----CTTEEEEEECSSC
T ss_pred EEEEEEEeCCCcEEEEEEecCCCCc----H-H--HHHHHHHHHHh-------cc-----CCCEEEEccCCCC
Confidence 5677788889999999999998642 1 2 23345444321 00 1359999999984
No 20
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=97.44 E-value=0.00015 Score=71.75 Aligned_cols=34 Identities=24% Similarity=0.170 Sum_probs=23.3
Q ss_pred ccceeeccCCc-eEeeeecc-ccCCCCCCCceeEEE
Q 006204 578 CDRILSYGKGM-RLLNYRRN-EIKMSDHRPVTATYM 611 (657)
Q Consensus 578 CDRIL~~g~gi-~~l~Y~s~-el~~SDHRPV~A~F~ 611 (657)
.|+||....-. ....+... +...|||.||.+.|.
T Consensus 249 ID~i~~s~~~~~~v~~~~v~~~~~~SDH~pv~~~l~ 284 (285)
T 2o3h_A 249 LDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLA 284 (285)
T ss_dssp CEEEEECGGGGGGEEEEEECTTCCSSSBCCEEEEEC
T ss_pred EEEEEECHHHHhhhhheEeeccCCCCCeecEEEEec
Confidence 89999875321 13444433 456899999999875
No 21
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=97.43 E-value=0.00044 Score=67.28 Aligned_cols=57 Identities=16% Similarity=0.211 Sum_probs=40.7
Q ss_pred cceEEEEEEEEcCEEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCcCCCCCcccCCcceEEEeCccCcc
Q 006204 430 NKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYR 504 (657)
Q Consensus 430 NKGaVsVr~~i~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfW~GDLNYR 504 (657)
..|.+.+.+.+.+..|.++|+|++.+.. ...+.+++..+++.+ . ...+|++||||-.
T Consensus 102 ~~~~~~~~i~~~~~~~~v~~vy~p~~~~---~~~~~~~l~~~~~~~--~-------------~~~~Ii~GDfN~~ 158 (245)
T 1wdu_A 102 TNNIVVVGIRTRAWEITLVSYYFEPDKP---IESYLEQIKRVERKM--G-------------PKRLIFGGDANAK 158 (245)
T ss_dssp CSSEEEEEEECSSCEEEEEEEECCTTSC---SHHHHHHHHHHHHTT--C-------------SSSEEEEEECCCC
T ss_pred cCCEEEEEEEcCCCcEEEEEEEeCCCCC---HHHHHHHHHHHHHHh--C-------------CCcEEEEeccccC
Confidence 4667888888888889999999998753 234555666666532 1 1249999999964
No 22
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=97.11 E-value=0.0019 Score=70.96 Aligned_cols=35 Identities=14% Similarity=0.073 Sum_probs=23.4
Q ss_pred ccceeeccCCc-eEeeeec-cccCCCCCCCceeEEEE
Q 006204 578 CDRILSYGKGM-RLLNYRR-NEIKMSDHRPVTATYMA 612 (657)
Q Consensus 578 CDRIL~~g~gi-~~l~Y~s-~el~~SDHRPV~A~F~v 612 (657)
.|+||....-. ++..+.- .+...|||.||.+.|.+
T Consensus 430 IDyIlvS~~l~~~v~~~~I~~~~~~SDH~PV~~~l~~ 466 (467)
T 2j63_A 430 LDYFVVSSRLASYVVDCFPMPTVMGSDHCPFQMWMRH 466 (467)
T ss_dssp CEEEEEEGGGGGGEEEEEECTTCCSSSBCCEEEEEEC
T ss_pred eEEEEEcHHHHcceeEEEECCCCCCCCcccEEEEEEc
Confidence 89999865321 2333332 35679999999998853
No 23
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=97.10 E-value=0.00044 Score=70.54 Aligned_cols=51 Identities=16% Similarity=0.132 Sum_probs=30.7
Q ss_pred EEEEEeecCCCCCCC-cCHHHHHHHHHHHHHhcCCCCCcCCCCCcccCCcceEEEeCccCccc
Q 006204 444 LFCFVCAHLTSGEKD-GDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 505 (657)
Q Consensus 444 s~cFVn~HLaAgek~-~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfW~GDLNYRI 505 (657)
.|.++|+||++.... .....|.+.+..|...+.- +.....+|++||||-..
T Consensus 164 ~~~v~~vh~p~~~~~~~~~~~r~~~~~~l~~~l~~-----------~~~~~pvIl~GDFN~~~ 215 (318)
T 1hd7_A 164 SFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKG-----------LASRKPLVLCGDLNVAH 215 (318)
T ss_dssp SCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHHH-----------HHHHSCEEEEEECSCCC
T ss_pred CEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHHh-----------cccCCCEEEEeeCCCCC
Confidence 588999999876532 1223466666666543210 00113599999999643
No 24
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=96.97 E-value=0.00026 Score=68.19 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=24.7
Q ss_pred ccceeeccCCc-eEeeeecc-ccCCCCCCCceeEEEEE
Q 006204 578 CDRILSYGKGM-RLLNYRRN-EIKMSDHRPVTATYMAE 613 (657)
Q Consensus 578 CDRIL~~g~gi-~~l~Y~s~-el~~SDHRPV~A~F~v~ 613 (657)
.|+||....-. +...+... +...|||.||.+.|.+.
T Consensus 220 ID~i~~s~~~~~~~~~~~v~~~~~~SDH~pv~~~l~~~ 257 (259)
T 2jc5_A 220 IDYQMVTPELAAKAVSAHVYKDEKFSDHAPLVVEYDYA 257 (259)
T ss_dssp CEEEEECHHHHTTEEEEEECCSSCCSSBCCEEEEESCC
T ss_pred EEEEEECHHHHhHHhheeecCCCCCCCcccEEEEEecc
Confidence 89999875211 13444433 57889999999998653
No 25
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.84 E-value=0.00036 Score=80.00 Aligned_cols=74 Identities=15% Similarity=0.039 Sum_probs=0.0
Q ss_pred cCEEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcC-CCCCcCCCCCcccCCcceEEEeCccCccccCChHHHHHHHhhh
Q 006204 441 HQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTH-FRSHSEIGFPKSICDHERIIWLGDLNYRINLPYEKTRELISKK 519 (657)
Q Consensus 441 ~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~-F~~~~~~~~P~~I~dhD~vfW~GDLNYRI~l~~~~v~~lI~~~ 519 (657)
.+..|+++|+||.++...+ ..|..+...|++.+. +........+..-.....||++||||- .+.+.+.+++..+
T Consensus 545 ~g~~l~V~ntHL~~~p~~~--~~R~~Qa~~l~~~l~~~~~~~~~~~~~~~~~~~pvIl~GDFNs---~P~s~~~~~l~~~ 619 (727)
T 4b8c_D 545 SGDTIWAVTTHLHWDPKFN--DVKTFQVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNS---YINSAVYELINTG 619 (727)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEEEeccccCCCCC--chHHHHHHHHHHHHHHHHHHhcccccccccCCCceEEecccCC---CCCCcceEeeecC
Confidence 3678999999999864322 246666666655432 100000000000011235999999997 4555555555443
No 26
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=96.75 E-value=0.00062 Score=67.19 Aligned_cols=60 Identities=15% Similarity=0.264 Sum_probs=35.3
Q ss_pred ceEEEEEEEEc---CEEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCcCCCCCcccCCcceEEEeCccCccc
Q 006204 431 KGSVSVSMSIH---QTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 505 (657)
Q Consensus 431 KGaVsVr~~i~---~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfW~GDLNYRI 505 (657)
.+.+.+.|... +..|.+||+||.+... .++.+.+.+++..+. . ......+|++||||-.-
T Consensus 111 R~p~~~~~~~~~~~g~~~~vi~~Hl~~~~~----~~q~~~l~~~~~~~~-~----------~~~~~~vil~GDfN~~~ 173 (260)
T 2a40_B 111 REPAVVKFSSHSTKVKEFAIVALHSAPSDA----VAEINSLYDVYLDVQ-Q----------KWHLNDVMLMGDFNADC 173 (260)
T ss_dssp SCCEEEEEECTTSSSSEEEEEECCCCGGGH----HHHHHHHHHHHHHHH-H----------HHCCCCEEEEEECCCST
T ss_pred eCCEEEEEEeCCCCCceEEEEEecCCCCCc----HHHHHHHHHHHHHHH-H----------hCCCCCEEEEecCCCCC
Confidence 55667777765 5689999999997632 112233333332210 0 00123599999999743
No 27
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=96.63 E-value=0.0044 Score=59.75 Aligned_cols=34 Identities=29% Similarity=0.307 Sum_probs=21.5
Q ss_pred ccceeeccCCc-eEeeeecc-----ccCCCCCCCceeEEE
Q 006204 578 CDRILSYGKGM-RLLNYRRN-----EIKMSDHRPVTATYM 611 (657)
Q Consensus 578 CDRIL~~g~gi-~~l~Y~s~-----el~~SDHRPV~A~F~ 611 (657)
.|+||....-. ....+... ....|||.||.+.|.
T Consensus 217 ID~i~~s~~~~~~~~~~~v~~~~~~~~~~SDH~pv~~~l~ 256 (257)
T 2voa_A 217 GDAILATPPLAERCVDCYADIKPRLAEKPSDHLPLVAVFD 256 (257)
T ss_dssp CEEEEECHHHHTTEEEEEECCHHHHSSSCCSBCCEEEEEC
T ss_pred EEEEEECHHHHhhhheeEeehhhccCCCCCCccCEEEEEe
Confidence 89999864211 12333221 146899999999875
No 28
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=96.58 E-value=0.002 Score=63.14 Aligned_cols=36 Identities=36% Similarity=0.527 Sum_probs=23.8
Q ss_pred EEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006204 113 ICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 151 (657)
Q Consensus 113 ifvGTwNV~G~~p~~~~dL~~WL~~~~~~DIYvlGfQEi 151 (657)
+.|.||||+|........|.+||.. ..||| |+|||+
T Consensus 4 l~i~s~Nv~g~~~~~~~~l~~~i~~-~~~DI--v~LQEt 39 (265)
T 3g91_A 4 LKIISWNVNGLRAVHRKGFLKWFME-EKPDI--LCLQEI 39 (265)
T ss_dssp EEEEEEECSCHHHHHHHTHHHHHHH-HCCSE--EEEECC
T ss_pred cEEEEEEcCCchhhhhhhHHHHHHh-cCCCE--EEEEec
Confidence 5678999999432111147788744 34686 788998
No 29
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=95.82 E-value=0.041 Score=56.43 Aligned_cols=60 Identities=20% Similarity=0.248 Sum_probs=37.8
Q ss_pred cceEEEEEEEEcCEEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCcCCCCCcccCCcceEEEeCccCc
Q 006204 430 NKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 503 (657)
Q Consensus 430 NKGaVsVr~~i~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfW~GDLNY 503 (657)
..|.+.|+ +.+ +.|++.||.+.... .|.+.+..|... |.... ..|. ..|...|++||||-
T Consensus 121 ~R~~l~i~--i~g--~~f~s~Hl~~~~~~----ea~~~v~~I~~~--~~~~~--~~~~--~~~~~~ii~GDFN~ 180 (261)
T 1sr4_B 121 SRPAVGIR--IGT--DVFFTVHALATGGS----DAVSLIRNIFTT--FNSSS--SPPE--RRVYSWMVVGDFNR 180 (261)
T ss_dssp CCCEEEEE--ETT--EEEEEEECCTTTTT----THHHHHHHHHHH--HHC-----CGG--GGGCEEEEEEECSS
T ss_pred CcceEEEE--ECC--eEEEEeCCCCCCCc----hHHHHHHHHHHH--HHhcc--cCCc--ccCCcEEEEeeCCC
Confidence 67787774 666 99999999998522 366667777653 21000 0011 02246999999995
No 30
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=95.63 E-value=0.021 Score=61.59 Aligned_cols=74 Identities=14% Similarity=0.068 Sum_probs=45.3
Q ss_pred CEEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcC-CCCCcCCCCCc--ccCCcceEEEeCccCccccCChHHHHHHHhh
Q 006204 442 QTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTH-FRSHSEIGFPK--SICDHERIIWLGDLNYRINLPYEKTRELISK 518 (657)
Q Consensus 442 ~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~-F~~~~~~~~P~--~I~dhD~vfW~GDLNYRI~l~~~~v~~lI~~ 518 (657)
+..|+++|+||..+... ...|..++..|++.+. |........+. .-...-.||++||||- .+.+.+.+++..
T Consensus 194 ~~~l~V~nTHL~~~p~~--~~vRl~Q~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~PvIl~GDFNs---~P~s~vy~~L~~ 268 (398)
T 3ngq_A 194 KQLLIVANAHMHWDPEY--SDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNS---LPDSGVVEYLSN 268 (398)
T ss_dssp CCEEEEEEEECCCCTTC--HHHHHHHHHHHHHHHHHHHCC-------------CCCEEEEEECSC---CTTSHHHHHHHH
T ss_pred CcEEEEEEeCcCCCCCC--HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCceEEEeeCCC---CCCCHHHHHHhc
Confidence 46799999999997543 3568888888876542 21000000000 0001224999999998 778888888876
Q ss_pred hc
Q 006204 519 KQ 520 (657)
Q Consensus 519 ~~ 520 (657)
+.
T Consensus 269 G~ 270 (398)
T 3ngq_A 269 GG 270 (398)
T ss_dssp TE
T ss_pred CC
Confidence 53
No 31
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=95.55 E-value=0.049 Score=53.91 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=25.2
Q ss_pred EEEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006204 112 RICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 151 (657)
Q Consensus 112 rifvGTwNV~G~~p~~~~dL~~WL~~~~~~DIYvlGfQEi 151 (657)
.+.|.||||||.--..+. |.+||.. ..||| |++||+
T Consensus 7 ~mki~s~Nvn~~r~~~~~-l~~~l~~-~~~DI--l~LQEt 42 (240)
T 2ei9_A 7 RLRIGQINLGGAEDATRE-LPSIARD-LGLDI--VLVQEQ 42 (240)
T ss_dssp EEEEEEEECTTCHHHHHT-HHHHHHH-HTCSE--EEEESC
T ss_pred cceEEEEecCccHHHHHH-HHHHHHH-cCCCE--EEeecc
Confidence 367889999995322222 7888854 34587 778998
No 32
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=89.86 E-value=0.057 Score=51.08 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=23.4
Q ss_pred ccceeeccCCceEeeeec--------cccCCCCCCCceeEEEE
Q 006204 578 CDRILSYGKGMRLLNYRR--------NEIKMSDHRPVTATYMA 612 (657)
Q Consensus 578 CDRIL~~g~gi~~l~Y~s--------~el~~SDHRPV~A~F~v 612 (657)
.|+||+.+. ++...+.. .....|||.||.|.|++
T Consensus 215 iD~I~~~~~-~~~~~~~~~~~~~~~~~~~~~SDH~pv~a~Fsa 256 (256)
T 4fva_A 215 FDRLYWSGP-LDKVKFTLEGRQRIRSCLCFPSDHWAINATFFA 256 (256)
T ss_dssp CEEEEEESS-CCEEEEEEECCSCCTTTCSCSCSSCEEEEEEEC
T ss_pred eEEEEEcCC-ceeeEEEEEeeEecCCCCCCcCcccCEEEEEcC
Confidence 799999763 44444432 12235999999999974
No 33
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=87.31 E-value=0.11 Score=48.05 Aligned_cols=37 Identities=22% Similarity=0.418 Sum_probs=23.0
Q ss_pred EEEEeeeeCCCCCCCCC----CCcccccCCCCCCCEEEEeeeee
Q 006204 112 RICVGTWNVGGKLPPDD----LDIDDWIDMNEPADIYVLGLQEI 151 (657)
Q Consensus 112 rifvGTwNV~G~~p~~~----~dL~~WL~~~~~~DIYvlGfQEi 151 (657)
++-|-||||+|..+... ..|.+||.. ..||| |+|||+
T Consensus 3 ~l~v~t~Ni~g~~~~~~~~r~~~i~~~i~~-~~pDI--i~LQEv 43 (250)
T 4f1h_A 3 KLSIISWNVDGLDTLNLADRARGLCSYLAL-YTPDV--VFLQEL 43 (250)
T ss_dssp CEEEEEEECCTTCCTTHHHHHHHHHHHHHH-HCCSE--EEEEEE
T ss_pred eEEEEEEEeCCCCCcCHHHHHHHHHHHHHH-cCCCE--EEEEeC
Confidence 36678999998532210 124455533 35695 889998
No 34
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=83.54 E-value=0.25 Score=46.46 Aligned_cols=35 Identities=20% Similarity=0.061 Sum_probs=23.7
Q ss_pred ccceeeccCC--ceEeeeec-------cccCCCCCCCceeEEEE
Q 006204 578 CDRILSYGKG--MRLLNYRR-------NEIKMSDHRPVTATYMA 612 (657)
Q Consensus 578 CDRIL~~g~g--i~~l~Y~s-------~el~~SDHRPV~A~F~v 612 (657)
.|+||+++.. +....+.. .....|||.||.|.|.+
T Consensus 211 iD~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~pv~a~~~i 254 (256)
T 4gz1_A 211 FDRIFFRAEEGHLIPQSLDLVGLEKLDCGRFPSDHWGLLCTLNV 254 (256)
T ss_dssp CEEEEEECC-CSEEEEEEEEECCSCCTTSSCSCSBCEEEEEEEE
T ss_pred EEEEEEECCccceeeeEEEEEeccccCCCCCCCccccEEEEEEE
Confidence 7999998643 33334332 12346999999999975
No 35
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=81.11 E-value=0.34 Score=50.89 Aligned_cols=39 Identities=26% Similarity=0.333 Sum_probs=25.2
Q ss_pred eEEEEEeeeeCCCCCCCCC----CCcccccCCCCCCCEEEEeeeee
Q 006204 110 EVRICVGTWNVGGKLPPDD----LDIDDWIDMNEPADIYVLGLQEI 151 (657)
Q Consensus 110 ~~rifvGTwNV~G~~p~~~----~dL~~WL~~~~~~DIYvlGfQEi 151 (657)
..++.|-||||+|...... .-|.+||.. ..||| |+|||+
T Consensus 117 ~~~lkVlSWNI~Gl~~~~~~~R~~~I~~~I~~-~~PDI--V~LQEv 159 (362)
T 4gew_A 117 GFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKN-VNPDI--LFLQEV 159 (362)
T ss_dssp TCEEEEEEEECCTTCCTTHHHHHHHHHHHHHH-HCCSE--EEEEEE
T ss_pred CCeEEEEEEEeCCCCCcCHHHHHHHHHHHHHH-cCCCE--EEEEcC
Confidence 4567788999999532110 024567743 45696 899998
No 36
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=79.81 E-value=0.2 Score=49.41 Aligned_cols=57 Identities=14% Similarity=0.026 Sum_probs=36.0
Q ss_pred ccceEEEEEEEEcCEEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCcCCCCCcccCCcceEEEeCccCccc
Q 006204 429 GNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 505 (657)
Q Consensus 429 GNKGaVsVr~~i~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfW~GDLNYRI 505 (657)
...|++.|.+.+ ..+.++|+|++.+... ..+.+.+..++..+. ...+|++||||---
T Consensus 76 ~~~~~~~i~i~~--~~i~i~svY~P~~~~~---~~~~~~l~~l~~~~~---------------~~~~Ii~GDfN~~~ 132 (240)
T 2ei9_A 76 SSTHITVVHIGG--WDLYMVSAYFQYSDPI---DPYLHRLGNILDRLR---------------GARVVICADTNAHS 132 (240)
T ss_dssp CCSSEEEEEETT--TTEEEEEEECCTTSCS---HHHHHHHHHHHHHTT---------------TSCEEEEEECCCCC
T ss_pred CCCCEEEEEEee--ccEEEEEEEcCCCCch---hHHHHHHHHHHHhcC---------------CCcEEEEEeccccc
Confidence 346776666643 4688999999998642 234444555543211 12499999999643
No 37
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=78.67 E-value=0.24 Score=47.32 Aligned_cols=36 Identities=25% Similarity=0.291 Sum_probs=24.0
Q ss_pred EEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006204 113 ICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 151 (657)
Q Consensus 113 ifvGTwNV~G~~p~~~~dL~~WL~~~~~~DIYvlGfQEi 151 (657)
+.|.||||+|........|.++|.. ..||| |+|||+
T Consensus 2 l~v~t~Ni~~~~~~~~~~i~~~i~~-~~~DI--i~LQE~ 37 (259)
T 2jc5_A 2 LKIISANVNGIRSAYKKGFYEYIAA-SGADI--VCVQEL 37 (259)
T ss_dssp EEEEEEECSSHHHHHHTTHHHHHHH-TTCSE--EEEECC
T ss_pred cEEEEEeeccHHHHHHhHHHHHHHh-cCCCE--EEEEEe
Confidence 5688999998432111146777743 45697 788999
No 38
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=77.64 E-value=0.25 Score=47.47 Aligned_cols=34 Identities=21% Similarity=0.415 Sum_probs=22.1
Q ss_pred EEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006204 114 CVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 151 (657)
Q Consensus 114 fvGTwNV~G~~p~~~~dL~~WL~~~~~~DIYvlGfQEi 151 (657)
.|.||||+|... .-..|.+||.. ..||| |||||+
T Consensus 2 rv~t~Nv~~~~~-~~~~i~~~i~~-~~~Di--i~LQE~ 35 (268)
T 1ako_A 2 KFVSFNINGLRA-RPHQLEAIVEK-HQPDV--IGLQET 35 (268)
T ss_dssp EEEEEECSCGGG-CHHHHHHHHHH-HCCSE--EEEECC
T ss_pred EEEEEehhHHHH-HHHHHHHHHHH-cCCCE--EEEEec
Confidence 578999998522 11134555533 45685 899998
No 39
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=75.80 E-value=0.23 Score=48.41 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=23.1
Q ss_pred ccceeeccCCc-eEeeeec-cccCCCCCCCceeEEEE
Q 006204 578 CDRILSYGKGM-RLLNYRR-NEIKMSDHRPVTATYMA 612 (657)
Q Consensus 578 CDRIL~~g~gi-~~l~Y~s-~el~~SDHRPV~A~F~v 612 (657)
.|+||....-. +.....- .+...|||.||.+.|.-
T Consensus 221 ID~il~s~~~~~~~~~~~i~~~~~~SDH~Pv~~~~~~ 257 (265)
T 3g91_A 221 LDYFFVNEEFKGKVKRSWILSDVMGSDHCPIGLEIEL 257 (265)
T ss_dssp CEEEEEEGGGGGGEEEEEECTTCCSSSBCCEEEEEEC
T ss_pred EEEEEECHHHHhhhcEEEEeCCCCCCCcceEEEEhhh
Confidence 89999865322 2223332 24578999999998753
No 40
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=72.13 E-value=0.44 Score=44.73 Aligned_cols=33 Identities=15% Similarity=0.111 Sum_probs=22.5
Q ss_pred ccceeeccCCc-eEeeeeccccCCCCCCCceeEE
Q 006204 578 CDRILSYGKGM-RLLNYRRNEIKMSDHRPVTATY 610 (657)
Q Consensus 578 CDRIL~~g~gi-~~l~Y~s~el~~SDHRPV~A~F 610 (657)
.|+||....-. +...+.......|||.||.+.|
T Consensus 204 ID~i~~s~~~~~~~~~~~v~~~~~SDH~pv~~~l 237 (238)
T 1vyb_A 204 IDHIVGSKALLSKCKRTEIITNYLSDHSAIKLEL 237 (238)
T ss_dssp CEEEEEEGGGGGGEEEEEEECCSSSSSCEEEEEE
T ss_pred eEEEEeCHHHHhhhhhceeecCCCCCcccEEEEe
Confidence 89999875321 2333333356789999999876
No 41
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=70.62 E-value=0.59 Score=44.73 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=22.3
Q ss_pred EEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006204 113 ICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 151 (657)
Q Consensus 113 ifvGTwNV~G~~p~~~~dL~~WL~~~~~~DIYvlGfQEi 151 (657)
+-|.||||+|..... ..|.+||. ...||| |+|||+
T Consensus 2 lrv~t~Nv~g~~~~~-~~i~~~i~-~~~~Di--i~lQE~ 36 (257)
T 2voa_A 2 LKIATFNVNSIRSRL-HIVIPWLK-ENKPDI--LCMQET 36 (257)
T ss_dssp EEEEEEECSCGGGTH-HHHHHHHH-HHCCSE--EEEECC
T ss_pred eEEEEEecCChHHHH-HHHHHHHh-hcCCCE--EEEEEe
Confidence 467899999853221 12445553 335686 889999
No 42
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=70.59 E-value=0.42 Score=46.86 Aligned_cols=37 Identities=35% Similarity=0.503 Sum_probs=24.1
Q ss_pred EEEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006204 112 RICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 151 (657)
Q Consensus 112 rifvGTwNV~G~~p~~~~dL~~WL~~~~~~DIYvlGfQEi 151 (657)
.+.|.||||+|........|..+|.. ..||| |+|||+
T Consensus 28 ~l~v~t~Ni~~~~~~~~~~i~~~i~~-~~~DI--i~LQE~ 64 (285)
T 2o3h_A 28 TLKIASWNVDGLRAWIKKKGLDWVKE-EAPDI--LCLQET 64 (285)
T ss_dssp CEEEEEEECSSHHHHHHTTHHHHHHH-HCCSE--EEEECC
T ss_pred ceEEEEEecccChhhhhhhHHHHHHh-cCCCE--EEEEEe
Confidence 46788999998432111136666643 35685 889999
No 43
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=68.62 E-value=4.3 Score=41.69 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=38.6
Q ss_pred cceEEEEEEEEcCEEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCcCCCCCcccCCcceEEEeCccCc
Q 006204 430 NKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 503 (657)
Q Consensus 430 NKGaVsVr~~i~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfW~GDLNY 503 (657)
....++|++ . .+.|.+.|+.+...+ .|.+.+..|... |.. .|..+-..--.+++||||-
T Consensus 130 ~Rp~lgiri--~--~~~ff~tHa~a~~g~----da~a~v~~I~~~--~~~-----~~~~~~~~~pwii~GDFNr 188 (262)
T 2f1n_A 130 GRPLLGIRI--G--NDAFFTAHAIAMRNN----DAPALVEEVYNF--FRD-----SRDPVHQALNWMILGDFNR 188 (262)
T ss_dssp CCCEEEEEE--T--TEEEEEEECCSSSSC----SHHHHHHHHHHH--HHT-----CSSHHHHTCEEEEEEECSS
T ss_pred CCceEEEEE--C--CEEEEEEEecCCCCc----cHHHHHHHHHHH--Hhc-----CcccccCCCcEEEEecCCC
Confidence 667777776 2 388999999998433 478889988875 321 1110000014899999997
No 44
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=68.48 E-value=2 Score=41.53 Aligned_cols=36 Identities=28% Similarity=0.576 Sum_probs=22.9
Q ss_pred EEEEeeeeCCCCCCCCCCCcccccC---------CCCCCCEEEEeeeee
Q 006204 112 RICVGTWNVGGKLPPDDLDIDDWID---------MNEPADIYVLGLQEI 151 (657)
Q Consensus 112 rifvGTwNV~G~~p~~~~dL~~WL~---------~~~~~DIYvlGfQEi 151 (657)
.+-|.||||.+..+.+. -..|-. ....||| |||||+
T Consensus 3 ~l~v~t~Ni~~~~~~~~--~~~~~~r~~~i~~~i~~~~~DI--v~LQEv 47 (267)
T 3g6s_A 3 DVRWATFNIRYDNPQDS--LNNWQYRKDRVCQFIKDHELDI--VGMQEV 47 (267)
T ss_dssp EEEEEEEECCCCCGGGG--GGSGGGTHHHHHHHHHHTTCSE--EEEESB
T ss_pred cEEEEEEEeccCCCCcc--ccCHHHHHHHHHHHHHHcCCCE--EEEecC
Confidence 46789999998654322 123322 1345786 889999
No 45
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=68.06 E-value=0.52 Score=47.72 Aligned_cols=37 Identities=35% Similarity=0.480 Sum_probs=24.6
Q ss_pred EEEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006204 112 RICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 151 (657)
Q Consensus 112 rifvGTwNV~G~~p~~~~dL~~WL~~~~~~DIYvlGfQEi 151 (657)
.+-|.||||+|........|.+||.. ..||| |+|||+
T Consensus 61 ~lrv~t~Nv~g~~~~~~~~i~~~i~~-~~~DI--i~LQE~ 97 (318)
T 1hd7_A 61 TLKICSWNVDGLRAWIKKKGLDWVKE-EAPDI--LCLQET 97 (318)
T ss_dssp CEEEEEEECSSHHHHHHTTHHHHHHH-HCCSE--EEEECC
T ss_pred ceEEEEEecCcchhhhhhhHHHHHHh-hCCCE--EEEEEc
Confidence 46788999998532111236777743 35687 889999
No 46
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=66.45 E-value=1.7 Score=44.50 Aligned_cols=39 Identities=31% Similarity=0.503 Sum_probs=27.2
Q ss_pred EEeeeeCCCCCCCC----CCCcccccCCCCCCCEEEEeeeeeeec
Q 006204 114 CVGTWNVGGKLPPD----DLDIDDWIDMNEPADIYVLGLQEIVPL 154 (657)
Q Consensus 114 fvGTwNV~G~~p~~----~~dL~~WL~~~~~~DIYvlGfQEiV~L 154 (657)
.|+|||+-|....+ +..+..||..+..||| |.+||+--+
T Consensus 6 kv~TwNi~g~~~~~~~k~~~~i~~~i~~~~~~DI--laLQEa~~~ 48 (261)
T 1sr4_B 6 KVATWNLQGSSAVNESKWNINVRQLLSGEQGADI--LMVQEAGSL 48 (261)
T ss_dssp CEEEEECCCCSSSSHHHHHHHHHHHHCSTTCCSE--EEEESCCSC
T ss_pred EEEEEEcCCCCCCChhhhhhHHHHHHcCCCCCCE--EEEecCCCC
Confidence 48999999953333 1246778866577898 667999443
No 47
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=65.92 E-value=1.4 Score=45.21 Aligned_cols=38 Identities=29% Similarity=0.550 Sum_probs=25.6
Q ss_pred EEEEeeeeCCCCCCCCC----CCcccccCCCCCCCEEEEeeeee
Q 006204 112 RICVGTWNVGGKLPPDD----LDIDDWIDMNEPADIYVLGLQEI 151 (657)
Q Consensus 112 rifvGTwNV~G~~p~~~----~dL~~WL~~~~~~DIYvlGfQEi 151 (657)
.+.|+|||+-|..++.+ .+|..-+....++|| |++||+
T Consensus 15 ~~kV~TwNiqgs~~~teskw~~~v~~lI~~~~~~DI--vaLQEa 56 (262)
T 2f1n_A 15 DFRVATWNLQGASATTESKWNINVRQLISGENAVDI--LAVQEA 56 (262)
T ss_dssp GCCEEEEEEEECTTSCHHHHHTHHHHHHSSTTCCSE--EEEEEE
T ss_pred eeEEEEEEcCCCCCCCcccccccHHHHHccCCCCCE--EEEeec
Confidence 46689999999655332 245553333456898 788999
No 48
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=65.85 E-value=1.1 Score=43.16 Aligned_cols=35 Identities=20% Similarity=0.178 Sum_probs=21.4
Q ss_pred EEeeeeCCCCCCCCCC--------CcccccCCCCCCCEEEEeeeee
Q 006204 114 CVGTWNVGGKLPPDDL--------DIDDWIDMNEPADIYVLGLQEI 151 (657)
Q Consensus 114 fvGTwNV~G~~p~~~~--------dL~~WL~~~~~~DIYvlGfQEi 151 (657)
-|.||||.+..+.... -|.++|. ...||| |||||+
T Consensus 2 rv~t~Ni~~~~~~~~~~~w~~r~~~i~~~i~-~~~~DI--v~LQEv 44 (257)
T 3l1w_A 2 KIATYNVRVDTEYDQDWQWSFRKEAVCQLIN-FHDWSL--CCIQEV 44 (257)
T ss_dssp EEEEEECCCCCGGGGGGSHHHHHHHHHHHHH-HHCCSE--EEEEEE
T ss_pred EEEEEEeccCCCCccccChHHHHHHHHHHHH-HcCCCE--EEEeCC
Confidence 5889999986543211 0223332 235687 889999
No 49
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=65.19 E-value=1.2 Score=42.51 Aligned_cols=34 Identities=18% Similarity=0.133 Sum_probs=24.3
Q ss_pred cccceeeccCCceEeeeecc-----ccCCCCCCCceeEEE
Q 006204 577 WCDRILSYGKGMRLLNYRRN-----EIKMSDHRPVTATYM 611 (657)
Q Consensus 577 WCDRIL~~g~gi~~l~Y~s~-----el~~SDHRPV~A~F~ 611 (657)
-.|+||..+ ++....+... ....|||.||.+.|.
T Consensus 227 riD~i~~s~-~~~~~~~~v~~~~~~~~~~SDH~Pv~~~l~ 265 (266)
T 3teb_A 227 RLDYIFSNK-ELKVKESKVIFNNKNKEIVSDHFGIEVKIE 265 (266)
T ss_dssp CCEEEEESS-CCCEEEEEEESSSSSSCCCSSSCEEEEEEC
T ss_pred eeEEEEeCC-CeEEEEEEEEeCCCCCCCcCCccCEEEEEE
Confidence 389999865 4555555432 256799999999885
No 50
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=64.02 E-value=0.65 Score=50.96 Aligned_cols=37 Identities=30% Similarity=0.381 Sum_probs=24.3
Q ss_pred EEEEeeeeCCCCCCCC--C-CCcccccCCCCCCCEEEEeeeee
Q 006204 112 RICVGTWNVGGKLPPD--D-LDIDDWIDMNEPADIYVLGLQEI 151 (657)
Q Consensus 112 rifvGTwNV~G~~p~~--~-~dL~~WL~~~~~~DIYvlGfQEi 151 (657)
.+.|.||||+|..... . ..|.+||.. ..||| |+|||+
T Consensus 149 ~LKI~TwNVnGl~~~~kr~~~~i~~~I~~-~~pDI--VcLQEt 188 (467)
T 2j63_A 149 MYKFITWNVAGLRGLLKKNASALRAFMEA-EKPDV--LCLQET 188 (467)
T ss_dssp EEEEEEEECSCHHHHHHHCTTHHHHHHHH-HCCSE--EEEECC
T ss_pred CeEEEEEEcCCCcccccccHHHHHHHHHH-cCCCE--EEEEec
Confidence 4778899999942110 0 236777744 34686 889998
No 51
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=63.58 E-value=0.65 Score=44.20 Aligned_cols=34 Identities=32% Similarity=0.513 Sum_probs=21.8
Q ss_pred EEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006204 114 CVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 151 (657)
Q Consensus 114 fvGTwNV~G~~p~~~~dL~~WL~~~~~~DIYvlGfQEi 151 (657)
-|.||||+|-.... ..|.++|. ...||| |+|||+
T Consensus 2 rv~t~Nv~~~~~~~-~~i~~~i~-~~~~DI--v~LQE~ 35 (256)
T 2jc4_A 2 KITTWNVNSLNVRL-PQVQNLLA-DNPPDI--LVLQEL 35 (256)
T ss_dssp EEEEEECSCHHHHH-HHHHHHHH-SSCCSE--EEEECC
T ss_pred EEEEEEcCCcHHHH-HHHHHHHH-hcCCCE--EEEEee
Confidence 47899999842111 13455653 345787 788999
No 52
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=60.13 E-value=1.3 Score=44.19 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=23.3
Q ss_pred eEEEEEeeeeCCCCCCCCCCCcccccC---------CCCCCCEEEEeeeee
Q 006204 110 EVRICVGTWNVGGKLPPDDLDIDDWID---------MNEPADIYVLGLQEI 151 (657)
Q Consensus 110 ~~rifvGTwNV~G~~p~~~~dL~~WL~---------~~~~~DIYvlGfQEi 151 (657)
.-.|.|.||||....+........|-. ....||| |||||+
T Consensus 4 ~~~lrV~t~Ni~~~~~~~~~~~~~w~~r~~~i~~~i~~~~~DI--v~LQEv 52 (298)
T 3mpr_A 4 PTSLTVASYNLRNANGSDSARGDGWGQRYPVIAQMVQYHDFDI--FGTQEC 52 (298)
T ss_dssp CEEEEEEEEECCCCCHHHHHHTCCHHHHHHHHHHHHHHTTCSE--EEEESB
T ss_pred CCcEEEEEEEeccCCCCCcccccCHHHHHHHHHHHHHHcCCCE--EEEeCC
Confidence 346789999997654322100123411 1346785 899999
No 53
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=58.60 E-value=0.87 Score=43.81 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=24.7
Q ss_pred CccccceeeccCCc-eEeeeecc-ccCCCCCCCceeEEEE
Q 006204 575 PSWCDRILSYGKGM-RLLNYRRN-EIKMSDHRPVTATYMA 612 (657)
Q Consensus 575 PAWCDRIL~~g~gi-~~l~Y~s~-el~~SDHRPV~A~F~v 612 (657)
.+-.|+||....-. +...+... +...|||.||.+.|.+
T Consensus 204 ~~rID~i~~s~~~~~~v~~~~v~~~~~~SDH~Pv~~~l~l 243 (245)
T 1wdu_A 204 QSRVDVTFCTEDMLDLIDGWRVDEDLVSSDHNGMVFNIRL 243 (245)
T ss_dssp EECCEEEEECGGGBTTEEEEEECTTSSSSSBCCEEEEECC
T ss_pred CCEEEEEEeChHHHhhccceEEcCCCCCCCcccEEEEEEe
Confidence 34489999865321 23333332 4789999999988753
No 54
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=53.97 E-value=8.7 Score=37.59 Aligned_cols=15 Identities=47% Similarity=0.481 Sum_probs=13.1
Q ss_pred cCCCCCCCceeEEEE
Q 006204 598 IKMSDHRPVTATYMA 612 (657)
Q Consensus 598 l~~SDHRPV~A~F~v 612 (657)
...|||.||.|.|.+
T Consensus 291 ~~~SDH~pv~a~l~~ 305 (306)
T 2ddr_A 291 NDYSDHYPVEATISM 305 (306)
T ss_dssp CCSCSSCCEEEEEEC
T ss_pred cCCCCCcceeEEEEe
Confidence 578999999999864
No 55
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=46.08 E-value=7.2 Score=38.19 Aligned_cols=15 Identities=33% Similarity=0.344 Sum_probs=12.5
Q ss_pred cCCCCCCCceeEEEE
Q 006204 598 IKMSDHRPVTATYMA 612 (657)
Q Consensus 598 l~~SDHRPV~A~F~v 612 (657)
...|||.||.|.|.+
T Consensus 286 ~~~SDH~Pv~a~l~~ 300 (301)
T 1zwx_A 286 QDFSDHYPVVGFTDN 300 (301)
T ss_dssp CCSSSSCCEEEEEC-
T ss_pred cCCCCCccEEEEEec
Confidence 578999999999864
No 56
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=33.08 E-value=5.7 Score=40.22 Aligned_cols=37 Identities=11% Similarity=-0.132 Sum_probs=21.8
Q ss_pred EEEEeeeeCCCCCCCCCCCccccc------C---CCCCCCEEEEeeeee
Q 006204 112 RICVGTWNVGGKLPPDDLDIDDWI------D---MNEPADIYVLGLQEI 151 (657)
Q Consensus 112 rifvGTwNV~G~~p~~~~dL~~WL------~---~~~~~DIYvlGfQEi 151 (657)
.|.|.||||.+-....+.+ ..|- . ....||| |||||+
T Consensus 29 ~lrV~T~Ni~~~~~~~~~~-~~~~~R~~~i~~~~~~~~pDI--v~LQEv 74 (317)
T 3i41_A 29 DLKLVSHNVYMLSTVLYPN-WGQYKRADLIGQSSYIKNNDV--VIFNEA 74 (317)
T ss_dssp CCCEEEEEEEECCTTTSTT-SCHHHHHHHHHHCSTTSSCSE--EEEEEE
T ss_pred ceEEEEEecccCccccCCC-ccHHHHHHHHHHHhhccCCCE--EEEEee
Confidence 5678899999852221111 0221 1 2356786 899999
Done!