BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006205
(657 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 189 bits (481), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 120/340 (35%), Positives = 176/340 (51%), Gaps = 18/340 (5%)
Query: 63 DSSLPKALESAVVLDVQNIACGGRHAALVNKQG-EVFSWGEESGGRLGHGVDSDVLHPKL 121
D P L + + ++ CG H ++ G EV+SWG GRLGHG SD+ P
Sbjct: 43 DRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLP 102
Query: 122 IDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLE 181
I AL + I+ +ACG+ H AVT+ G++ +WG G LG G+ VP+++ E
Sbjct: 103 IKALHGIRIKQIACGDSHCLAVTMEGEVQSWG--RNQNGQLGLGDTEDSLVPQKIQ-AFE 159
Query: 182 GIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAA 241
GI + ++ G HTA VT G L+ +G G +G LG GDR +P V S G + A
Sbjct: 160 GIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVA 219
Query: 242 CGVWHTAAVVEVMVGXXXXXXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNF 301
CG HT +V G L+T+G G+LGHGD E L+P + AL
Sbjct: 220 CGWRHTISV------------SYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFI 267
Query: 302 CRVACGHSLTVALTTSGHVYTMGSPVYGQLG-NPQADGKLPNRVEGKLSKSFVEEIACGS 360
+++ G T+ALT+ G +Y G +GQ+G D P +V + V+ ++CG
Sbjct: 268 SQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQ-VSCGW 326
Query: 361 YHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEAL 400
H +T + V+ WG+G NG+LG G++ DRN P ++EAL
Sbjct: 327 RHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 366
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 177/340 (52%), Gaps = 18/340 (5%)
Query: 81 IACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHT 140
I+ G H+ + V SWG G+LGHG D P + AL I V CG HT
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 68
Query: 141 CAVTLSG-DLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVT 199
A + SG ++Y+WG G +FG LGHGN + P + L GI + I+CG H VT
Sbjct: 69 VAYSQSGMEVYSWGWG--DFGRLGHGNSSDLFTPLPIK-ALHGIRIKQIACGDSHCLAVT 125
Query: 200 SAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGXXX 259
G++ ++G G LG GD + +P+++++ +G+R A G HTAAV E
Sbjct: 126 MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTE------- 178
Query: 260 XXXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGH 319
G L+ WG G G LG GD+ +LVP V + VACG T++++ SG
Sbjct: 179 -----DGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA 233
Query: 320 VYTMGSPVYGQLGNPQ-ADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKG 378
+YT G YGQLG+ D +P+++E LS SF+ +I+ G H LTS ++Y WG
Sbjct: 234 LYTYGWSKYGQLGHGDLEDHLIPHKLE-ALSNSFISQISGGFRHTMALTSDGKLYGWGWN 292
Query: 379 ANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAI 418
G++G G+ D+ SP V D++V ++CG T A+
Sbjct: 293 KFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAV 332
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 1/118 (0%)
Query: 304 VACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSYH- 362
++ G S +VAL + V + G GQLG+ A+ + L + + CG+ H
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 68
Query: 363 VAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAICL 420
VA S EVY+WG G GRLGHG++ D +P ++AL ++K IACG + A+ +
Sbjct: 69 VAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTM 126
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 59 GVKMDSSLPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLH 118
G +D P + V ++CG RH V ++ VF+WG + G+LG G D
Sbjct: 300 GNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNF 359
Query: 119 PKLIDALS 126
PK+I+ALS
Sbjct: 360 PKIIEALS 367
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 189 bits (481), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 120/340 (35%), Positives = 176/340 (51%), Gaps = 18/340 (5%)
Query: 63 DSSLPKALESAVVLDVQNIACGGRHAALVNKQG-EVFSWGEESGGRLGHGVDSDVLHPKL 121
D P L + + ++ CG H ++ G EV+SWG GRLGHG SD+ P
Sbjct: 55 DRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLP 114
Query: 122 IDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLE 181
I AL + I+ +ACG+ H AVT+ G++ +WG G LG G+ VP+++ E
Sbjct: 115 IKALHGIRIKQIACGDSHCLAVTMEGEVQSWG--RNQNGQLGLGDTEDSLVPQKIQ-AFE 171
Query: 182 GIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAA 241
GI + ++ G HTA VT G L+ +G G +G LG GDR +P V S G + A
Sbjct: 172 GIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVA 231
Query: 242 CGVWHTAAVVEVMVGXXXXXXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNF 301
CG HT +V G L+T+G G+LGHGD E L+P + AL
Sbjct: 232 CGWRHTISV------------SYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFI 279
Query: 302 CRVACGHSLTVALTTSGHVYTMGSPVYGQLG-NPQADGKLPNRVEGKLSKSFVEEIACGS 360
+++ G T+ALT+ G +Y G +GQ+G D P +V + V+ ++CG
Sbjct: 280 SQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQ-VSCGW 338
Query: 361 YHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEAL 400
H +T + V+ WG+G NG+LG G++ DRN P ++EAL
Sbjct: 339 RHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 378
Score = 186 bits (473), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 177/340 (52%), Gaps = 18/340 (5%)
Query: 81 IACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHT 140
I+ G H+ + V SWG G+LGHG D P + AL I V CG HT
Sbjct: 21 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 80
Query: 141 CAVTLSG-DLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVT 199
A + SG ++Y+WG G +FG LGHGN + P + L GI + I+CG H VT
Sbjct: 81 VAYSQSGMEVYSWGWG--DFGRLGHGNSSDLFTPLPIK-ALHGIRIKQIACGDSHCLAVT 137
Query: 200 SAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGXXX 259
G++ ++G G LG GD + +P+++++ +G+R A G HTAAV E
Sbjct: 138 MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTE------- 190
Query: 260 XXXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGH 319
G L+ WG G G LG GD+ +LVP V + VACG T++++ SG
Sbjct: 191 -----DGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA 245
Query: 320 VYTMGSPVYGQLGNPQ-ADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKG 378
+YT G YGQLG+ D +P+++E LS SF+ +I+ G H LTS ++Y WG
Sbjct: 246 LYTYGWSKYGQLGHGDLEDHLIPHKLE-ALSNSFISQISGGWRHTMALTSDGKLYGWGWN 304
Query: 379 ANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAI 418
G++G G+ D+ SP V D++V ++CG T A+
Sbjct: 305 KFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAV 344
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 1/118 (0%)
Query: 304 VACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSYH- 362
++ G S +VAL + V + G GQLG+ A+ + L + + CG+ H
Sbjct: 21 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 80
Query: 363 VAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAICL 420
VA S EVY+WG G GRLGHG++ D +P ++AL ++K IACG + A+ +
Sbjct: 81 VAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTM 138
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 78 VQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALS 126
V ++CG RH V ++ VF+WG + G+LG G D PK+I+ALS
Sbjct: 331 VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 379
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 189 bits (480), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 120/340 (35%), Positives = 176/340 (51%), Gaps = 18/340 (5%)
Query: 63 DSSLPKALESAVVLDVQNIACGGRHAALVNKQG-EVFSWGEESGGRLGHGVDSDVLHPKL 121
D P L + + ++ CG H ++ G EV+SWG GRLGHG SD+ P
Sbjct: 43 DRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLP 102
Query: 122 IDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLE 181
I AL + I+ +ACG+ H AVT+ G++ +WG G LG G+ VP+++ E
Sbjct: 103 IKALHGIRIKQIACGDSHCLAVTMEGEVQSWG--RNQNGQLGLGDTEDSLVPQKIQ-AFE 159
Query: 182 GIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAA 241
GI + ++ G HTA VT G L+ +G G +G LG GDR +P V S G + A
Sbjct: 160 GIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVA 219
Query: 242 CGVWHTAAVVEVMVGXXXXXXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNF 301
CG HT +V G L+T+G G+LGHGD E L+P + AL
Sbjct: 220 CGWRHTISV------------SYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFI 267
Query: 302 CRVACGHSLTVALTTSGHVYTMGSPVYGQLG-NPQADGKLPNRVEGKLSKSFVEEIACGS 360
+++ G T+ALT+ G +Y G +GQ+G D P +V + V+ ++CG
Sbjct: 268 SQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQ-VSCGW 326
Query: 361 YHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEAL 400
H +T + V+ WG+G NG+LG G++ DRN P ++EAL
Sbjct: 327 RHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 366
Score = 186 bits (472), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 177/340 (52%), Gaps = 18/340 (5%)
Query: 81 IACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHT 140
I+ G H+ + V SWG G+LGHG D P + AL I V CG HT
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 68
Query: 141 CAVTLSG-DLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVT 199
A + SG ++Y+WG G +FG LGHGN + P + L GI + I+CG H VT
Sbjct: 69 VAYSQSGMEVYSWGWG--DFGRLGHGNSSDLFTPLPIK-ALHGIRIKQIACGDSHCLAVT 125
Query: 200 SAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGXXX 259
G++ ++G G LG GD + +P+++++ +G+R A G HTAAV E
Sbjct: 126 MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTE------- 178
Query: 260 XXXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGH 319
G L+ WG G G LG GD+ +LVP V + VACG T++++ SG
Sbjct: 179 -----DGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA 233
Query: 320 VYTMGSPVYGQLGNPQ-ADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKG 378
+YT G YGQLG+ D +P+++E LS SF+ +I+ G H LTS ++Y WG
Sbjct: 234 LYTYGWSKYGQLGHGDLEDHLIPHKLE-ALSNSFISQISGGWRHTMALTSDGKLYGWGWN 292
Query: 379 ANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAI 418
G++G G+ D+ SP V D++V ++CG T A+
Sbjct: 293 KFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAV 332
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 1/118 (0%)
Query: 304 VACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSYH- 362
++ G S +VAL + V + G GQLG+ A+ + L + + CG+ H
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 68
Query: 363 VAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAICL 420
VA S EVY+WG G GRLGHG++ D +P ++AL ++K IACG + A+ +
Sbjct: 69 VAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTM 126
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 59 GVKMDSSLPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLH 118
G +D P + V ++CG RH V ++ VF+WG + G+LG G D
Sbjct: 300 GNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNF 359
Query: 119 PKLIDALS 126
PK+I+ALS
Sbjct: 360 PKIIEALS 367
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 121/344 (35%), Positives = 175/344 (50%), Gaps = 18/344 (5%)
Query: 59 GVKMDSSLPKALESAVVLDVQNIACGGRHAALVNKQG-EVFSWGEESGGRLGHGVDSDVL 117
G D P L + + ++ CG H ++ G EV+SWG GRLGHG SD+
Sbjct: 41 GDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLF 100
Query: 118 HPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVN 177
P I AL + I+ +ACG+ H AVT G++ +WG G LG G+ VP+++
Sbjct: 101 TPLPIKALHGIRIKQIACGDSHCLAVTXEGEVQSWG--RNQNGQLGLGDTEDSLVPQKIQ 158
Query: 178 GPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRT 237
EGI + ++ G HTA VT G L+ +G G +G LG GDR +P V S G +
Sbjct: 159 -AFEGIRIKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKX 217
Query: 238 VRAACGVWHTAAVVEVMVGXXXXXXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALV 297
ACG HT +V G L+T+G G+LGHGD E L+P + AL
Sbjct: 218 SXVACGWRHTISV------------SYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALS 265
Query: 298 EPNFCRVACGHSLTVALTTSGHVYTMGSPVYGQLG-NPQADGKLPNRVEGKLSKSFVEEI 356
+++ G T ALT+ G +Y G +GQ+G D P +V + V+ +
Sbjct: 266 NSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQ-V 324
Query: 357 ACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEAL 400
+CG H +T + V+ WG+G NG+LG G++ DRN P ++EAL
Sbjct: 325 SCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 368
Score = 186 bits (473), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 178/340 (52%), Gaps = 18/340 (5%)
Query: 81 IACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHT 140
I+ G H+ + V SWG G+LGHG D P + AL I V CG HT
Sbjct: 11 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 70
Query: 141 CAVTLSG-DLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVT 199
A + SG ++Y+WG G +FG LGHGN + P + L GI + I+CG H VT
Sbjct: 71 VAYSQSGXEVYSWGWG--DFGRLGHGNSSDLFTPLPIK-ALHGIRIKQIACGDSHCLAVT 127
Query: 200 SAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGXXX 259
G++ ++G G LG GD + +P+++++ +G+R A G HTAAV E
Sbjct: 128 XEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTE------- 180
Query: 260 XXXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGH 319
G L+ WG G G LG GD+ +LVP V + VACG T++++ SG
Sbjct: 181 -----DGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGA 235
Query: 320 VYTMGSPVYGQLGNPQ-ADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKG 378
+YT G YGQLG+ D +P+++E LS SF+ +I+ G+ H LTS ++Y WG
Sbjct: 236 LYTYGWSKYGQLGHGDLEDHLIPHKLE-ALSNSFISQISGGARHTXALTSDGKLYGWGWN 294
Query: 379 ANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAI 418
G++G G+ D+ SP V D++V ++CG T A+
Sbjct: 295 KFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAV 334
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 59 GVKMDSSLPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLH 118
G +D P + V ++CG RH V ++ VF+WG + G+LG G D
Sbjct: 302 GNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNF 361
Query: 119 PKLIDALS 126
PK+I+ALS
Sbjct: 362 PKIIEALS 369
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 127/355 (35%), Positives = 182/355 (51%), Gaps = 17/355 (4%)
Query: 66 LPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDAL 125
+P E+ L + G + V G++++ G +GGRLG G V P L++++
Sbjct: 43 VPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI 102
Query: 126 SNMNIELVAC--GEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGI 183
++ I+ VA G H A++ G++Y+WG+ G LGHGN P RV L GI
Sbjct: 103 QHVFIKKVAVNSGGKHCLALSSEGEVYSWGEA--EDGKLGHGNRSPCDRP-RVIESLRGI 159
Query: 184 HVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACG 243
V ++ G H+A VT+AG L+T+G G +G LGH D + P+ VE+L+G R V ACG
Sbjct: 160 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACG 219
Query: 244 VWHTAAVVEVMVGXXXXXXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCR 303
+ +++WGDGD G+LG G + VP + +L +
Sbjct: 220 SGDAQTLC----------LTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVK 269
Query: 304 VACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADG-KLPNRVEGKLSKSFVEEIACGSYH 362
V CG +VALT SG VYT G Y +LG+ D + P +V+G K + IA GS H
Sbjct: 270 VECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVI-AIATGSLH 328
Query: 363 VAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAA 417
T EVYTWG G+LG G T+ P LV AL+ K+V +ACG+ T A
Sbjct: 329 CVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLA 383
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 136/253 (53%), Gaps = 17/253 (6%)
Query: 67 PKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALS 126
P+ +ES ++V ++A GG H+A V G++++WG+ GRLGH D L PKL++AL
Sbjct: 150 PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQ 209
Query: 127 NMNIELVACG--EYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIH 184
+ +ACG + T +T +++WGDG Y G LG G VP +++ L G+
Sbjct: 210 GHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDY--GKLGRGGSDGCKVPMKID-SLTGLG 266
Query: 185 VSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGV 244
V + CG + +T +G ++T+G G + LGHG V PR+V+ L+G + + A G
Sbjct: 267 VVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGS 326
Query: 245 WHTAAVVEVMVGXXXXXXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRV 304
H E G+++TWGD D+G+LG G A P VAAL RV
Sbjct: 327 LHCVCCTE------------DGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRV 374
Query: 305 ACGHSLTVALTTS 317
ACG + T+A +TS
Sbjct: 375 ACGSAHTLAWSTS 387
Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 116/336 (34%), Positives = 162/336 (48%), Gaps = 27/336 (8%)
Query: 85 GRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVT 144
GR G ++ WG G+LG + V P +AL+ + + GE AVT
Sbjct: 10 GRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 69
Query: 145 LSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGI-HV----SSISCGPWHTAVVT 199
G LY G G +G VS P LE I HV +++ G H ++
Sbjct: 70 ADGKLYATGYGAGGRLGIGGTESVS--TPTL----LESIQHVFIKKVAVNSGGKHCLALS 123
Query: 200 SAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGXXX 259
S G+++++G+ G LGHG+R PR +ESL+G+ V A G H+A V
Sbjct: 124 SEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVT-------- 175
Query: 260 XXXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVAC--GHSLTVALTTS 317
G L+TWG G GRLGH D E +L P V AL +AC G + T+ LT
Sbjct: 176 ----AAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDD 231
Query: 318 GHVYTMGSPVYGQLGNPQADG-KLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWG 376
V++ G YG+LG +DG K+P +++ L+ V ++ CGS LT VYTWG
Sbjct: 232 DTVWSWGDGDYGKLGRGGSDGCKVPMKID-SLTGLGVVKVECGSQFSVALTKSGAVYTWG 290
Query: 377 KGANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGT 412
KG RLGHG D P V+ L+ K+V +IA G+
Sbjct: 291 KGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGS 326
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 113/225 (50%), Gaps = 16/225 (7%)
Query: 198 VTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKG--LRTVRAACGVWHTAAVVEVMV 255
VT+ G+L+ G G G LG G +SVS P +ES++ ++ V G H A+
Sbjct: 68 VTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLAL----- 122
Query: 256 GXXXXXXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALT 315
G++++WG+ + G+LGHG++ P + +L VA G + + +T
Sbjct: 123 -------SSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVT 175
Query: 316 TSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGS--YHVAVLTSKTEVY 373
+G +YT G YG+LG+ ++ +L ++ L V +IACGS LT V+
Sbjct: 176 AAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVW 235
Query: 374 TWGKGANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAI 418
+WG G G+LG G +D P +++L V + CG+ F+ A+
Sbjct: 236 SWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVAL 280
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 117/252 (46%), Gaps = 24/252 (9%)
Query: 201 AGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGXXXX 260
+G ++ +G G LG + V +P E+L LR V+ G AV
Sbjct: 19 SGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT--------- 69
Query: 261 XXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVAC--GHSLTVALTTSG 318
GKL+ G G GRLG G E+ PT + ++ +VA G +AL++ G
Sbjct: 70 ---ADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEG 126
Query: 319 HVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKG 378
VY+ G G+LG+ RV L V ++A G H A +T+ ++YTWGKG
Sbjct: 127 EVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKG 186
Query: 379 ANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAICLH------KWVSG----VD 428
GRLGH D++D+ P LVEAL+ +V IACG+ +CL W G +
Sbjct: 187 RYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLG 246
Query: 429 QSMCSGCRLPFN 440
+ GC++P
Sbjct: 247 RGGSDGCKVPMK 258
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 94/339 (27%), Positives = 148/339 (43%), Gaps = 32/339 (9%)
Query: 73 AVVLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSD--VLHPKLIDALSNMNI 130
A + D +I+ GG H ++ K G+++S+G G LG D P LID
Sbjct: 72 AGIPDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKA-- 129
Query: 131 ELVACGEYHTCAVTLSGDLYTWG---DGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSS 187
++ G+ H+ + G ++ WG D N GL GN+ + P + +EG S
Sbjct: 130 LCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRT---PIDL---MEGTVCCS 183
Query: 188 ISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRT-VRAACGVWH 246
I+ G H ++T+AG++FT G G LG +S+S E +G R +R +
Sbjct: 184 IASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSIS----GEGRRGKRDLLRPTQLIIT 239
Query: 247 TAAVVEVMVGXXXXXXXXXGKL-FTWGDG--DKGRLGHGDKEAKLVPTCVAALVEPNFCR 303
A E + + W G + +L H K + T + ++ +
Sbjct: 240 RAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELK-DIRH 298
Query: 304 VACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVE-----GKLSKSFVEEIAC 358
+A G TV LTT +G P YG+LG G + + VE KL++ V + C
Sbjct: 299 IAGGQHHTVILTTDLKCSVVGRPEYGRLGL----GDVKDVVEKPTIVKKLTEKIV-SVGC 353
Query: 359 GSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLV 397
G +T ++Y+WG G N +LG GD DD P +V
Sbjct: 354 GEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVV 392
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 89/365 (24%), Positives = 155/365 (42%), Gaps = 51/365 (13%)
Query: 95 GEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIEL-VACGEYHTCAVTLSGDLYTWG 153
G V G G+LG G D+L K + ++ + + ++ G H +T SGD+Y++G
Sbjct: 43 GNVLVCGNGDVGQLGLG--EDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFG 100
Query: 154 DGTYNFGLLGH--GNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGD-- 209
+ G LG + S P ++ P + + IS G H+A + G++F +G
Sbjct: 101 --CNDEGALGRDTSEDGSESKPDLIDLPGKAL---CISAGDSHSACLLEDGRVFAWGSFR 155
Query: 210 ---GTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGXXXXXXXXXG 266
G G+ G++++ ++ ++G A G H + G
Sbjct: 156 DSHGNMGLTIDGNKRT-----PIDLMEGTVCCSIASGADHLVILT------------TAG 198
Query: 267 KLFTWGDGDKGRLGH-------GD----KEAKLVPT-CVAALVEPNFCRVACGHSLTVAL 314
K+FT G ++G+LG G+ K L PT + +P A + +
Sbjct: 199 KVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRE 258
Query: 315 TTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYT 374
+ + ++ G + QL + + GK K + IA G +H +LT+ +
Sbjct: 259 SQTQVIWATGLNNFKQLAH-ETKGKEFALTPIKTELKDIRHIAGGQHHTVILTTDLKCSV 317
Query: 375 WGKGANGRLGHGDTDD-RNSPSLVEALKDKQVKSIACGTNFTAAIC----LHKWVSGVDQ 429
G+ GRLG GD D P++V+ L +K V S+ CG + A+ L+ W SGV+
Sbjct: 318 VGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIV-SVGCGEVCSYAVTIDGKLYSWGSGVNN 376
Query: 430 SMCSG 434
+ G
Sbjct: 377 QLGVG 381
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 90/228 (39%), Gaps = 28/228 (12%)
Query: 80 NIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDS-----------DVLHPKLIDALSNM 128
+IA G H ++ G+VF+ G G+LG + D+L P +
Sbjct: 183 SIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAK 242
Query: 129 NIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSI 188
E + Y T + S W G NF L H + + + L+ I I
Sbjct: 243 PFEAIWATNYCTF-MRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIR--HI 299
Query: 189 SCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSV-SIPREVESLKGLRTVRAACGVWHT 247
+ G HT ++T+ + G +G LG GD K V P V+ L + V CG +
Sbjct: 300 AGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCS 358
Query: 248 AAVVEVMVGXXXXXXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAA 295
AV GKL++WG G +LG GD + +L P V +
Sbjct: 359 YAVT------------IDGKLYSWGSGVNNQLGVGDGDDELEPIVVVS 394
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 77 DVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLH-PKLIDALSNMNIELVAC 135
D+++IA G H ++ + G GRLG G DV+ P ++ L+ I V C
Sbjct: 295 DIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGC 353
Query: 136 GEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHT 195
GE + AVT+ G LY+WG G N +G G++ LE I V S + H
Sbjct: 354 GEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDD-----------ELEPIVVVSKNTQGKHM 402
Query: 196 AVVTSAGQLFTF 207
+ + GQ F
Sbjct: 403 LLASGGGQHAIF 414
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 94/370 (25%), Positives = 165/370 (44%), Gaps = 43/370 (11%)
Query: 77 DVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELV--A 134
DV GG H ++K G+V+S+G G LG D+ V +++ + ++V +
Sbjct: 60 DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGR--DTSVEGSEMVPGKVELQEKVVQVS 117
Query: 135 CGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSH-WVPKRVNGPLEGIHVSSISCGPW 193
G+ HT A+T G ++ WG N G++G + VP +V L+ + V ++ G
Sbjct: 118 AGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQ--LD-VPVVKVASGND 174
Query: 194 HTAVVTSAGQLFTFGDGTFGVLGH--------GDRKSVS---IPREVE-----SLKGLRT 237
H ++T+ G L+T G G G LG G R+ + +P+ V S +R
Sbjct: 175 HLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRF 234
Query: 238 VRAACGVWHTAAVVEVMVGXXXXXXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALV 297
A CG + T A+ G ++ +G + +LG E+ +P + +
Sbjct: 235 QDAFCGAYFTFAI------------SHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFK 282
Query: 298 EP--NFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSK-SFVE 354
++ + G TV + + G Y++G YG+LG +G + +S+ V
Sbjct: 283 NSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLG--LGEGAEEKSIPTLISRLPAVS 340
Query: 355 EIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSP--SLVEALKDKQVKSIACGT 412
+ACG+ +T V+ WG G N +LG G +D SP + + L+++ V S++ G
Sbjct: 341 SVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGG 400
Query: 413 NFTAAICLHK 422
T + K
Sbjct: 401 QHTVLLVKDK 410
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 266 GKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVYTMGS 325
G + T G GD G+LG G+ + + ++ E + + G TV L+ SG VY+ G
Sbjct: 27 GLVLTLGQGDVGQLGLGENVMERKKPALVSIPE-DVVQAEAGGMHTVCLSKSGQVYSFGC 85
Query: 326 PVYGQLGNP---QADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWG--KGAN 380
G LG + +P +VE L + V +++ G H A LT V+ WG + N
Sbjct: 86 NDEGALGRDTSVEGSEMVPGKVE--LQEKVV-QVSAGDSHTAALTDDGRVFLWGSFRDNN 142
Query: 381 GRLG 384
G +G
Sbjct: 143 GVIG 146
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 94/370 (25%), Positives = 165/370 (44%), Gaps = 43/370 (11%)
Query: 77 DVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELV--A 134
DV GG H ++K G+V+S+G G LG D+ V +++ + ++V +
Sbjct: 49 DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGR--DTSVEGSEMVPGKVELQEKVVQVS 106
Query: 135 CGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSH-WVPKRVNGPLEGIHVSSISCGPW 193
G+ HT A+T G ++ WG N G++G + VP +V L+ + V ++ G
Sbjct: 107 AGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQ--LD-VPVVKVASGND 163
Query: 194 HTAVVTSAGQLFTFGDGTFGVLGH--------GDRKSVS---IPREVE-----SLKGLRT 237
H ++T+ G L+T G G G LG G R+ + +P+ V S +R
Sbjct: 164 HLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRF 223
Query: 238 VRAACGVWHTAAVVEVMVGXXXXXXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALV 297
A CG + T A+ G ++ +G + +LG E+ +P + +
Sbjct: 224 QDAFCGAYFTFAI------------SHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFK 271
Query: 298 EP--NFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSK-SFVE 354
++ + G TV + + G Y++G YG+LG +G + +S+ V
Sbjct: 272 NSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLG--LGEGAEEKSIPTLISRLPAVS 329
Query: 355 EIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSP--SLVEALKDKQVKSIACGT 412
+ACG+ +T V+ WG G N +LG G +D SP + + L+++ V S++ G
Sbjct: 330 SVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGG 389
Query: 413 NFTAAICLHK 422
T + K
Sbjct: 390 QHTVLLVKDK 399
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 266 GKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVYTMGS 325
G + T G GD G+LG G+ + + ++ E + + G TV L+ SG VY+ G
Sbjct: 16 GLVLTLGQGDVGQLGLGENVMERKKPALVSIPE-DVVQAEAGGMHTVCLSKSGQVYSFGC 74
Query: 326 PVYGQLGNP---QADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWG--KGAN 380
G LG + +P +VE L + V +++ G H A LT V+ WG + N
Sbjct: 75 NDEGALGRDTSVEGSEMVPGKVE--LQEKVV-QVSAGDSHTAALTDDGRVFLWGSFRDNN 131
Query: 381 GRLG 384
G +G
Sbjct: 132 GVIG 135
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 113/260 (43%), Gaps = 41/260 (15%)
Query: 77 DVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLID--ALSNMNIELVA 134
++ +A G H ++++G VF+WG +LG V + K +D +++ +A
Sbjct: 205 NIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKV-MERFRLKTLDPRPFGLRHVKYIA 263
Query: 135 CGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWV----PKRVNGPLEGIHVSSISC 190
GE H A+T L +W G FG G +V PKR+ P + + + SI+
Sbjct: 264 SGENHCFALTKDNKLVSW--GLNQFGQCGVSEDVEDGALVTKPKRLALP-DNVVIRSIAA 320
Query: 191 GPWHTAVVTSAGQLFTFGDGTFGVLG--------------HGDRKSVSIPREVESLKGLR 236
G H+ +++ G L++ G +G HG ++V +P ++ ++ +
Sbjct: 321 GEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFK 380
Query: 237 TVRAACGVWHTAAVVEVMVGXXXXXXXXXGKLFTWGDGDKGRLGHGDKEAKL-VPTCV-- 293
+V A G H+ AV + G ++WG G+ +G G E VPT +
Sbjct: 381 SV--AAGSHHSVAVAQ------------NGIAYSWGFGETYAVGLGPFEDDTEVPTRIKN 426
Query: 294 AALVEPNFCRVACGHSLTVA 313
A + N V CG +V+
Sbjct: 427 TATQDHNIILVGCGGQFSVS 446
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 84/393 (21%), Positives = 152/393 (38%), Gaps = 68/393 (17%)
Query: 78 VQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKL-------------IDA 124
+ + A GG H ++++ V+SWG G LG + K ++
Sbjct: 69 IISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNE 128
Query: 125 LSNMNIEL----------------VACGEYHTCAVTLSGDLYTWGDGTYNFGLLG-HGNE 167
L + ++ +A + +CA+ +G++Y WG N G+LG + ++
Sbjct: 129 LESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDK 188
Query: 168 VS-HWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIP 226
+ P +V ++ ++ G H + G +F +G+G LG + +
Sbjct: 189 IKIQKTPWKVP-TFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLK 247
Query: 227 REVESLKGLRTVR-AACGVWHTAAVVEVMVGXXXXXXXXXGKLFTWGDGDKGRLG-HGDK 284
GLR V+ A G H A+ + KL +WG G+ G D
Sbjct: 248 TLDPRPFGLRHVKYIASGENHCFALTK------------DNKLVSWGLNQFGQCGVSEDV 295
Query: 285 EAKLVPTCVAALVEPN---FCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLP 341
E + T L P+ +A G ++ L+ G +Y+ G ++G P+ + LP
Sbjct: 296 EDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDN--LP 353
Query: 342 NR----VEGKLSKSFV----------EEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGD 387
V GK + + +A GS+H + Y+WG G +G G
Sbjct: 354 EYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGP 413
Query: 388 -TDDRNSPSLVE--ALKDKQVKSIACGTNFTAA 417
DD P+ ++ A +D + + CG F+ +
Sbjct: 414 FEDDTEVPTRIKNTATQDHNIILVGCGGQFSVS 446
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 77/337 (22%), Positives = 133/337 (39%), Gaps = 62/337 (18%)
Query: 86 RHAALVNKQGEVFSWGEESGGRLGHGV---DSDVLHPKLIDALSNMNIELV--ACGEYHT 140
+H L + ++F WG S LG G + +V P+L L +++ A G HT
Sbjct: 20 KHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHT 79
Query: 141 CAVTLSGDLYTWGDGTYNFGLLGHG------------------------NEVSHW---VP 173
A+ ++++W G + G LG NE+ +P
Sbjct: 80 LALDEESNVWSW--GCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIP 137
Query: 174 KRVNGPL-EGIHVSSISCGPWHTAVVTSAGQLFTFGDGTF----GVLG-HGDRKSVS-IP 226
+ PL EG V ++ + + S G+++ + GTF G+LG + D+ + P
Sbjct: 138 RESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAW--GTFRCNEGILGFYQDKIKIQKTP 195
Query: 227 REVESLKGLRTVRAACGVWHTAAVVEVMVGXXXXXXXXXGKLFTWGDGDKGRLGHGDKEA 286
+V + V+ A G H + E G +F WG+G + +LG E
Sbjct: 196 WKVPTFSKYNIVQLAPGKDHILFLDE------------EGMVFAWGNGQQNQLGRKVMER 243
Query: 287 KLVPTCVAALVEPNFCR-VACGHSLTVALTTSGHVYTMGSPVYGQLGNPQ--ADGKL--- 340
+ T + +A G + ALT + + G +GQ G + DG L
Sbjct: 244 FRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTK 303
Query: 341 PNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGK 377
P R+ + IA G +H +L+ ++Y+ G+
Sbjct: 304 PKRL-ALPDNVVIRSIAAGEHHSLILSQDGDLYSCGR 339
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 96/265 (36%), Gaps = 53/265 (20%)
Query: 194 HTAVVTSAGQLFTFGDGTFGVLGHG---DRKSVSIPREVESL--KGLRTVRAACGVWHTA 248
H + +F +G G+ LG G K V PR L + + A G HT
Sbjct: 21 HMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTL 80
Query: 249 AVVEVMVGXXXXXXXXXGKLFTWGDGDKGRLGHGDKEAKL-------------------- 288
A+ E +++WG D G LG AK
Sbjct: 81 ALDE------------ESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNE 128
Query: 289 VPTCVAALVEPNFCRVACGH---------SLTVALTTSGHVYTMGS-----PVYGQLGNP 334
+ + A + +F +A GH +++ AL ++G VY G+ + G +
Sbjct: 129 LESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDK 188
Query: 335 QADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSP 394
K P +V SK + ++A G H+ L + V+ WG G +LG +
Sbjct: 189 IKIQKTPWKVP-TFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLK 247
Query: 395 SL-VEALKDKQVKSIACGTNFTAAI 418
+L + VK IA G N A+
Sbjct: 248 TLDPRPFGLRHVKYIASGENHCFAL 272
>pdb|1JOC|A Chain A, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol
1,3-Diphosphate
pdb|1JOC|B Chain B, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol
1,3-Diphosphate
Length = 125
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 422 KWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVC 481
KW + C C F+ R RH+C CG +FC CS+K +L P+ KP RVC
Sbjct: 62 KWAEDNEVQNCMACGKGFSVTVR-RHHCRQCGNIFCAECSAKNAL----TPSSKKPVRVC 116
Query: 482 DNCFNKLR 489
D CFN L+
Sbjct: 117 DACFNDLQ 124
>pdb|2YQM|A Chain A, Solution Structure Of The Fyve Domain In Zinc Finger Fyve
Domain-Containing Protein 12
Length = 89
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 421 HKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRV 480
H W+ + + C C F+ R++H+C NCG +FC++CSS + P+ KP RV
Sbjct: 18 HAWLKDDEATHCRQCEKEFS-ISRRKHHCRNCGHIFCNTCSSNE----LALPSYPKPVRV 72
Query: 481 CDNCFNKL 488
CD+C L
Sbjct: 73 CDSCHTLL 80
>pdb|1HYI|A Chain A, Solution Structure Of The Eea1 Fyve Domain Complexed With
Inositol 1,3-Bisphosphate
pdb|1HYJ|A Chain A, Solution Structure Of The Eea1 Fyve Domain
Length = 65
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 422 KWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVC 481
KW + C C F+ R RH+C CG +FC CS+K +L P+ KP RVC
Sbjct: 2 KWAEDNEVQNCMACGKGFSVTVR-RHHCRQCGNIFCAECSAKNAL----TPSSKKPVRVC 56
Query: 482 DNCFNKLR 489
D CFN L+
Sbjct: 57 DACFNDLQ 64
>pdb|2YW8|A Chain A, Crystal Structure Of Human Run And Fyve Domain-Containing
Protein
Length = 82
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 421 HKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRV 480
H W+ + + C C F+ R++H+C NCG +FC++CSS + P+ KP RV
Sbjct: 11 HAWLKDDEATHCRQCEKEFS-ISRRKHHCRNCGHIFCNTCSSNE----LALPSYPKPVRV 65
Query: 481 CDNCFNKL 488
CD+C L
Sbjct: 66 CDSCHTLL 73
>pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve Tandem Domains Of
Hrs, A Protein Involved In Membrane Trafficking And
Signal Transduction
Length = 220
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 11/67 (16%)
Query: 428 DQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNP----NKPYRVCDN 483
D +C CR+ F F ++H+C NCG VFC C++K+ P P K RVCD
Sbjct: 160 DGRVCHRCRVEFT-FTNRKHHCRNCGQVFCGQCTAKQ------CPLPKYGIEKEVRVCDG 212
Query: 484 CFNKLRK 490
CF L++
Sbjct: 213 CFAALQR 219
>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of
Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) At 1.48 A Resolution
pdb|4AVX|A Chain A, Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) Bound To An Ip2 Compound At 1.68 A
Resolution
Length = 226
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 427 VDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFN 486
VD C CR+ F RK H+C CG +FC CSSK S K RVC+ C+
Sbjct: 162 VDAEECHRCRVQFGVMTRK-HHCRACGQIFCGKCSSKYSTIPKFG--IEKEVRVCEPCYE 218
Query: 487 KLRK 490
+L +
Sbjct: 219 QLNR 222
>pdb|1Z2Q|A Chain A, High-Resolution Solution Structure Of The Lm5-1 Fyve
Domain From Leishmania Major
Length = 84
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 423 WVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCD 482
W D C+GC F R RH+C NCG V C CS ++ A +P RVCD
Sbjct: 15 WQEDEDAPACNGCGCVFTTTVR-RHHCRNCGYVLCGDCSRHRA--AIPMRGITEPERVCD 71
Query: 483 NCFNKLRKT 491
C+ LR +
Sbjct: 72 ACYLALRSS 80
>pdb|3MPX|A Chain A, Crystal Structure Of The Dh And Ph-1 Domains Of Human Fgd5
Length = 434
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 432 CSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRK 490
C C F+ +RH+C+ CG + C +CS K + ++ +VCD CF +L+K
Sbjct: 378 CXNCGCDFS-LTLRRHHCHACGKIVCRNCSRN---KYPLKYLKDRXAKVCDGCFGELKK 432
>pdb|3T7L|A Chain A, Crystal Structure Of The Fyve Domain Of Endofin (Zfyve16)
At 1.1a Resolution
Length = 90
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 423 WVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCD 482
WV + C C++ F F ++RH+C CG VFC C ++K + K RVC
Sbjct: 14 WVPDSEAPNCMNCQVKFT-FTKRRHHCRACGKVFCGVCCNRKCKLQYL----EKEARVCV 68
Query: 483 NCFNKLRK 490
C+ + K
Sbjct: 69 VCYETISK 76
>pdb|1X4U|A Chain A, Solution Structure Of The Fyve Domain From Human Fyve
Domain Containing 27 Isoform B Protein
Length = 84
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 432 CSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYR----VCDNCFNK 487
C+GC F+ K KR +C NCG FC C S K K+SM + R VC +C
Sbjct: 17 CTGCSATFSVLK-KRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASCNQT 75
Query: 488 LRKT 491
L K+
Sbjct: 76 LSKS 79
>pdb|1VFY|A Chain A, Phosphatidylinositol-3-Phosphate Binding Fyve Domain Of
Vps27p Protein From Saccharomyces Cerevisiae
Length = 73
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 11/64 (17%)
Query: 427 VDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPN----KPYRVCD 482
+D C C F+ RK H+C +CG VFC SS P P+ +P RVCD
Sbjct: 9 IDSDACMICSKKFSLLNRK-HHCRSCGGVFCQEHSSNS------IPLPDLGIYEPVRVCD 61
Query: 483 NCFN 486
+CF
Sbjct: 62 SCFE 65
>pdb|1WFK|A Chain A, Fyve Domain Of Fyve Domain Containing 19 Protein From Mus
Musculus
Length = 88
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 429 QSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKL 488
+S C GC + F FK K + C NCG FC+ C S +L N +VC C L
Sbjct: 9 ESRCYGCAVKFTLFK-KEYGCKNCGRAFCNGCLSFSALVPRAG---NTQQKVCKQCHTIL 64
Query: 489 RK 490
+
Sbjct: 65 TR 66
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|A Chain A, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|C Chain C, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|D Chain D, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|E Chain E, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|F Chain F, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
Length = 282
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 80/209 (38%), Gaps = 59/209 (28%)
Query: 65 SLPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDA 124
++P A +S V IA G H+ L K GEV +WG G+ + A
Sbjct: 56 TMPAATQSGV----DAIAAGNYHS-LALKDGEVIAWGGNEDGQ------------TTVPA 98
Query: 125 LSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIH 184
+ ++ +A G + + A+ G + WGD + + P E
Sbjct: 99 EARSGVDAIAAGAWASYALK-DGKVIAWGDDS----------------DGQTTVPAEAQS 141
Query: 185 VSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGV 244
+ G +TA+ G + +GD FG ++P E +S G+ V A G+
Sbjct: 142 GVTALDGGVYTALAVKNGGVIAWGDNYFG--------QTTVPAEAQS--GVDDV--AGGI 189
Query: 245 WHTAAVVEVMVGXXXXXXXXXGKLFTWGD 273
+H+ A+ + GK+ WGD
Sbjct: 190 FHSLALKD-------------GKVIAWGD 205
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 83/359 (23%), Positives = 128/359 (35%), Gaps = 107/359 (29%)
Query: 63 DSSLPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLI 122
++++P +S V + GG L K G+V WG G+L +
Sbjct: 15 EATVPAEAQSGV-----DAIAGGYFHGLALKGGKVLGWGANLNGQL------------TM 57
Query: 123 DALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEG 182
A + ++ +A G YH+ A+ G++ WG GNE + P E
Sbjct: 58 PAATQSGVDAIAAGNYHSLALK-DGEVIAWG-----------GNE-----DGQTTVPAEA 100
Query: 183 -IHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAA 241
V +I+ G W + + G++ +GD + G ++P E +S V A
Sbjct: 101 RSGVDAIAAGAWASYALKD-GKVIAWGDDSDG--------QTTVPAEAQS-----GVTAL 146
Query: 242 CGVWHTAAVVEVMVGXXXXXXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNF 301
G +TA V+ G + WGD G+ T V A +
Sbjct: 147 DGGVYTALAVK------------NGGVIAWGDNYFGQ------------TTVPAEAQSGV 182
Query: 302 CRVACG--HSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACG 359
VA G HSL + G V G Y Q +P + S V IA G
Sbjct: 183 DDVAGGIFHSLAL---KDGKVIAWGDNRYKQT-------TVPTE-----ALSGVSAIASG 227
Query: 360 SYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAI 418
++ L + +V WG R +PS V++ V SI G N A+
Sbjct: 228 EWYSLALKNG-KVIAWGS------------SRTAPSSVQS----GVSSIEAGPNAAYAL 269
>pdb|2ZET|C Chain C, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|D Chain D, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 153
Score = 33.5 bits (75), Expect = 0.40, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Query: 427 VDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNC 484
++++ C+ C P+ R C C L C SCS +P + +CD C
Sbjct: 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHA---------HPEEQGWLCDPC 114
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii
In Complex With Tem-1 Beta-Lactamase
Length = 273
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 80/209 (38%), Gaps = 59/209 (28%)
Query: 65 SLPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDA 124
++P A +S V IA G H+ L K GEV +WG G+ + A
Sbjct: 58 TMPAATQSGV----DAIAAGNYHS-LALKDGEVIAWGGNEDGQ------------TTVPA 100
Query: 125 LSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIH 184
+ ++ +A G + + A+ G + WGD + + P E
Sbjct: 101 EARSGVDAIAAGAWASYALK-DGKVIAWGDDS----------------DGQTTVPAEAQS 143
Query: 185 VSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGV 244
+ G +TA+ G + +GD FG ++P E +S G+ V A G+
Sbjct: 144 GVTALDGGVYTALAVKNGGVIAWGDNYFG--------QTTVPAEAQS--GVDDV--AGGI 191
Query: 245 WHTAAVVEVMVGXXXXXXXXXGKLFTWGD 273
+H+ A+ + GK+ WGD
Sbjct: 192 FHSLALKD-------------GKVIAWGD 207
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 38/147 (25%)
Query: 64 SSLPKALESAVV-LDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLI 122
+++P +S V LD GG + AL K G V +WG+ G+ +
Sbjct: 135 TTVPAEAQSGVTALD------GGVYTALAVKNGGVIAWGDNYFGQ------------TTV 176
Query: 123 DALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEG 182
A + ++ VA G +H+ A+ G + WGD Y K+ P E
Sbjct: 177 PAEAQSGVDDVAGGIFHSLALK-DGKVIAWGDNRY----------------KQTTVPTEA 219
Query: 183 IH-VSSISCGPWHTAVVTSAGQLFTFG 208
+ VS+I+ G W++ + + G++ +G
Sbjct: 220 LSGVSAIASGEWYSLALKN-GKVIAWG 245
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 83/359 (23%), Positives = 128/359 (35%), Gaps = 107/359 (29%)
Query: 63 DSSLPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLI 122
++++P +S V + GG L K G+V WG G+L +
Sbjct: 17 EATVPAEAQSGV-----DAIAGGYFHGLALKGGKVLGWGANLNGQL------------TM 59
Query: 123 DALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEG 182
A + ++ +A G YH+ A+ G++ WG GNE + P E
Sbjct: 60 PAATQSGVDAIAAGNYHSLALK-DGEVIAWG-----------GNE-----DGQTTVPAEA 102
Query: 183 -IHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAA 241
V +I+ G W + + G++ +GD + G ++P E +S V A
Sbjct: 103 RSGVDAIAAGAWASYALKD-GKVIAWGDDSDG--------QTTVPAEAQS-----GVTAL 148
Query: 242 CGVWHTAAVVEVMVGXXXXXXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNF 301
G +TA V+ G + WGD G+ T V A +
Sbjct: 149 DGGVYTALAVK------------NGGVIAWGDNYFGQ------------TTVPAEAQSGV 184
Query: 302 CRVACG--HSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACG 359
VA G HSL + G V G Y Q +P + S V IA G
Sbjct: 185 DDVAGGIFHSLAL---KDGKVIAWGDNRYKQT-------TVPTE-----ALSGVSAIASG 229
Query: 360 SYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAI 418
++ L + +V WG R +PS V++ V SI G N A+
Sbjct: 230 EWYSLALKNG-KVIAWGS------------SRTAPSSVQS----GVSSIEAGPNAAYAL 271
>pdb|1Y02|A Chain A, Crystal Structure Of A Fyve-type Domain From Caspase
Regulator Carp2
Length = 120
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 425 SGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSK 463
+G++ S C C F N RK+ C +C FC +CSS+
Sbjct: 16 TGLEPS-CKSCGAHFANTARKQ-TCLDCKKNFCMTCSSQ 52
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,611,766
Number of Sequences: 62578
Number of extensions: 710027
Number of successful extensions: 1777
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1511
Number of HSP's gapped (non-prelim): 70
length of query: 657
length of database: 14,973,337
effective HSP length: 105
effective length of query: 552
effective length of database: 8,402,647
effective search space: 4638261144
effective search space used: 4638261144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)