Query 006205
Match_columns 657
No_of_seqs 581 out of 2635
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 19:54:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006205.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006205hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 4E-48 8.8E-53 404.6 30.5 364 27-420 62-464 (476)
2 KOG1427 Uncharacterized conser 100.0 3.8E-42 8.2E-47 337.6 18.9 361 30-420 17-398 (443)
3 COG5184 ATS1 Alpha-tubulin sup 100.0 7.2E-41 1.6E-45 350.2 24.5 316 85-421 58-410 (476)
4 KOG1427 Uncharacterized conser 100.0 3.6E-38 7.8E-43 309.6 14.9 316 20-369 61-399 (443)
5 KOG0783 Uncharacterized conser 99.9 7.9E-27 1.7E-31 254.1 14.5 308 25-371 134-451 (1267)
6 KOG0783 Uncharacterized conser 99.9 6E-26 1.3E-30 247.3 13.4 304 89-420 136-448 (1267)
7 KOG1428 Inhibitor of type V ad 99.9 8.8E-21 1.9E-25 213.1 22.9 270 27-346 492-870 (3738)
8 KOG1428 Inhibitor of type V ad 99.8 1.1E-19 2.3E-24 204.6 21.0 301 77-417 480-891 (3738)
9 PF01363 FYVE: FYVE zinc finge 99.4 1.8E-13 3.9E-18 111.4 1.5 67 422-489 2-68 (69)
10 PF00415 RCC1: Regulator of ch 99.2 7.7E-12 1.7E-16 95.3 4.6 50 369-418 1-51 (51)
11 smart00064 FYVE Protein presen 99.2 5.9E-12 1.3E-16 102.1 3.4 66 421-489 2-67 (68)
12 KOG0941 E3 ubiquitin protein l 99.1 4.2E-13 9.1E-18 149.7 -9.5 188 66-318 4-197 (850)
13 KOG1818 Membrane trafficking a 99.1 1.4E-11 3.1E-16 135.8 2.2 65 427-494 163-227 (634)
14 PF00415 RCC1: Regulator of ch 99.1 1.3E-10 2.7E-15 88.5 5.0 50 94-143 1-51 (51)
15 PTZ00303 phosphatidylinositol 99.1 7.5E-11 1.6E-15 129.2 3.5 74 419-492 449-533 (1374)
16 KOG1729 FYVE finger containing 99.0 5.6E-11 1.2E-15 121.5 1.1 68 419-490 158-226 (288)
17 KOG1819 FYVE finger-containing 99.0 1.6E-10 3.4E-15 121.3 1.6 72 413-487 885-961 (990)
18 PF13540 RCC1_2: Regulator of 98.9 2.6E-09 5.5E-14 71.6 4.3 30 185-214 1-30 (30)
19 PF13540 RCC1_2: Regulator of 98.8 4.9E-09 1.1E-13 70.2 4.8 30 78-107 1-30 (30)
20 cd00065 FYVE FYVE domain; Zinc 98.8 1.6E-09 3.4E-14 84.6 2.4 55 429-486 2-56 (57)
21 KOG0941 E3 ubiquitin protein l 98.8 2E-10 4.3E-15 128.6 -5.9 143 182-329 13-156 (850)
22 KOG1842 FYVE finger-containing 98.3 6.7E-08 1.5E-12 101.3 -2.7 71 422-493 173-263 (505)
23 KOG1409 Uncharacterized conser 98.2 5.8E-07 1.3E-11 91.8 1.5 84 407-492 255-353 (404)
24 KOG1841 Smad anchor for recept 98.1 9.7E-07 2.1E-11 101.7 0.6 62 419-484 547-608 (1287)
25 KOG1843 Uncharacterized conser 97.7 8.6E-06 1.9E-10 84.9 0.6 68 420-488 151-218 (473)
26 KOG4424 Predicted Rho/Rac guan 96.6 0.0006 1.3E-08 74.6 0.5 68 426-496 412-479 (623)
27 PF11725 AvrE: Pathogenicity f 94.9 0.55 1.2E-05 58.2 15.5 101 307-420 712-813 (1774)
28 KOG1811 Predicted Zn2+-binding 94.8 0.0027 6E-08 69.6 -3.6 65 420-487 313-382 (1141)
29 KOG0230 Phosphatidylinositol-4 93.8 0.056 1.2E-06 65.7 4.1 51 429-493 5-55 (1598)
30 PF02318 FYVE_2: FYVE-type zin 92.4 0.095 2.1E-06 47.2 2.7 52 428-488 53-104 (118)
31 KOG0943 Predicted ubiquitin-pr 91.3 0.028 6.2E-07 65.9 -2.5 133 75-213 373-508 (3015)
32 PLN02153 epithiospecifier prot 86.3 50 0.0011 35.2 24.3 16 362-377 307-322 (341)
33 PF11725 AvrE: Pathogenicity f 85.4 1.8 3.9E-05 53.9 7.0 116 228-370 696-815 (1774)
34 KOG3669 Uncharacterized conser 84.8 7.5 0.00016 43.5 10.7 70 129-207 228-299 (705)
35 KOG4693 Uncharacterized conser 84.2 48 0.001 34.0 15.2 25 137-162 80-104 (392)
36 PF02183 HALZ: Homeobox associ 82.6 1.3 2.8E-05 32.6 2.6 26 631-656 13-38 (45)
37 KOG0943 Predicted ubiquitin-pr 81.9 0.17 3.7E-06 59.8 -3.2 128 127-273 373-504 (3015)
38 KOG0230 Phosphatidylinositol-4 78.2 1.7 3.7E-05 53.5 3.3 57 425-493 93-149 (1598)
39 KOG0315 G-protein beta subunit 78.1 84 0.0018 32.0 16.6 63 304-377 132-196 (311)
40 COG4257 Vgb Streptogramin lyas 77.3 29 0.00062 35.8 11.1 139 23-207 61-205 (353)
41 KOG3669 Uncharacterized conser 76.5 76 0.0016 36.0 14.8 107 190-323 190-299 (705)
42 PHA03098 kelch-like protein; P 75.2 1.2E+02 0.0026 34.4 17.3 17 138-155 335-351 (534)
43 PHA03098 kelch-like protein; P 74.7 1.6E+02 0.0034 33.5 18.1 16 193-209 335-350 (534)
44 PHA02713 hypothetical protein; 74.4 70 0.0015 36.8 15.0 20 136-155 341-360 (557)
45 PF07569 Hira: TUP1-like enhan 69.6 17 0.00038 36.4 7.6 28 128-155 13-40 (219)
46 KOG1900 Nuclear pore complex, 69.4 1.3E+02 0.0028 37.5 15.7 218 88-325 92-339 (1311)
47 KOG1729 FYVE finger containing 69.4 1.5 3.3E-05 45.6 -0.0 65 422-487 13-81 (288)
48 KOG0993 Rab5 GTPase effector R 68.6 0.24 5.3E-06 52.4 -5.9 63 423-490 462-526 (542)
49 KOG0646 WD40 repeat protein [G 68.5 1.9E+02 0.0042 31.9 15.6 67 129-208 83-151 (476)
50 PLN02153 epithiospecifier prot 65.8 1.9E+02 0.0041 30.7 23.8 17 138-155 130-146 (341)
51 KOG1274 WD40 repeat protein [G 64.1 96 0.0021 37.0 12.9 70 137-212 15-88 (933)
52 KOG4441 Proteins containing BT 63.7 79 0.0017 36.6 12.5 56 265-325 475-530 (571)
53 PF07569 Hira: TUP1-like enhan 61.8 33 0.00073 34.3 7.9 27 183-209 13-39 (219)
54 KOG0278 Serine/threonine kinas 61.4 1.3E+02 0.0028 30.7 11.6 39 116-155 133-173 (334)
55 KOG4441 Proteins containing BT 61.3 1.7E+02 0.0036 33.9 14.5 57 313-377 471-530 (571)
56 KOG0315 G-protein beta subunit 59.9 2.1E+02 0.0045 29.3 17.7 52 264-326 144-197 (311)
57 TIGR03547 muta_rot_YjhT mutatr 59.5 1.6E+02 0.0034 31.3 13.3 16 310-325 314-329 (346)
58 KOG0649 WD40 repeat protein [G 58.8 1.5E+02 0.0031 30.3 11.4 47 183-230 63-110 (325)
59 COG3074 Uncharacterized protei 58.4 8 0.00017 30.8 2.1 26 631-656 26-51 (79)
60 PF01286 XPA_N: XPA protein N- 57.9 5.7 0.00012 27.3 1.1 12 476-487 22-33 (34)
61 TIGR01562 FdhE formate dehydro 57.2 7.7 0.00017 40.8 2.5 75 409-493 189-267 (305)
62 PRK03564 formate dehydrogenase 55.5 9 0.0002 40.3 2.7 76 408-493 191-267 (309)
63 PRK14131 N-acetylneuraminic ac 54.6 3.1E+02 0.0067 29.6 16.5 18 138-155 131-148 (376)
64 PF06698 DUF1192: Protein of u 51.9 26 0.00056 27.4 4.0 29 626-654 17-45 (59)
65 KOG3799 Rab3 effector RIM1 and 51.7 7 0.00015 35.3 1.0 53 428-488 64-117 (169)
66 COG5570 Uncharacterized small 50.9 15 0.00032 27.6 2.4 25 629-653 32-56 (57)
67 TIGR00622 ssl1 transcription f 49.6 13 0.00027 33.0 2.2 33 429-461 55-96 (112)
68 KOG2106 Uncharacterized conser 49.2 4.3E+02 0.0094 29.7 18.4 30 354-383 453-482 (626)
69 PRK14131 N-acetylneuraminic ac 48.7 3.8E+02 0.0082 28.9 17.2 18 193-210 131-148 (376)
70 smart00706 TECPR Beta propelle 48.5 28 0.00061 23.6 3.5 24 184-207 9-33 (35)
71 PF15135 UPF0515: Uncharacteri 46.9 18 0.00039 36.4 3.0 47 406-458 111-167 (278)
72 smart00706 TECPR Beta propelle 46.8 42 0.0009 22.7 4.1 24 129-152 9-33 (35)
73 PHA02790 Kelch-like protein; P 46.7 2E+02 0.0043 32.4 11.9 14 142-155 314-327 (480)
74 KOG3576 Ovo and related transc 45.2 5.7 0.00012 38.6 -0.6 14 446-459 145-158 (267)
75 PF05191 ADK_lid: Adenylate ki 44.3 8.3 0.00018 26.9 0.2 34 447-492 2-35 (36)
76 PF07975 C1_4: TFIIH C1-like d 44.2 5.6 0.00012 30.1 -0.7 29 432-460 2-35 (51)
77 PRK00464 nrdR transcriptional 44.0 13 0.00028 35.1 1.5 11 446-456 28-38 (154)
78 KOG0291 WD40-repeat-containing 43.5 6.3E+02 0.014 30.0 24.5 110 88-212 312-424 (893)
79 PF04841 Vps16_N: Vps16, N-ter 42.3 5E+02 0.011 28.5 18.8 70 76-153 81-153 (410)
80 KOG0649 WD40 repeat protein [G 42.1 4E+02 0.0086 27.3 17.1 114 26-152 25-141 (325)
81 PHA02713 hypothetical protein; 41.9 2.8E+02 0.0061 31.9 12.3 14 364-377 458-471 (557)
82 PHA02790 Kelch-like protein; P 41.5 1.9E+02 0.004 32.6 10.7 15 141-155 357-371 (480)
83 TIGR01063 gyrA DNA gyrase, A s 39.3 7.8E+02 0.017 29.8 22.0 121 82-216 543-674 (800)
84 TIGR03548 mutarot_permut cycli 38.8 4.8E+02 0.01 27.3 14.4 16 363-378 217-232 (323)
85 KOG1900 Nuclear pore complex, 36.8 3.8E+02 0.0083 33.7 12.4 159 196-384 93-278 (1311)
86 PLN02193 nitrile-specifier pro 36.6 6.5E+02 0.014 28.2 17.2 17 138-155 168-184 (470)
87 PF12341 DUF3639: Protein of u 34.9 90 0.0019 20.4 3.9 25 182-206 1-25 (27)
88 PF04841 Vps16_N: Vps16, N-ter 34.8 6.5E+02 0.014 27.7 14.4 25 351-375 217-243 (410)
89 KOG2106 Uncharacterized conser 34.4 7.3E+02 0.016 28.1 14.9 89 186-322 215-303 (626)
90 KOG0320 Predicted E3 ubiquitin 34.3 6.4 0.00014 37.6 -2.1 48 430-490 132-179 (187)
91 PRK13979 DNA topoisomerase IV 33.8 1E+03 0.022 29.5 24.7 116 85-212 516-641 (957)
92 KOG1034 Transcriptional repres 32.6 1.2E+02 0.0026 32.2 6.4 57 28-102 324-382 (385)
93 KOG1841 Smad anchor for recept 32.2 32 0.00068 41.8 2.6 55 423-493 651-705 (1287)
94 KOG1587 Cytoplasmic dynein int 32.2 8.4E+02 0.018 28.1 15.3 194 32-271 264-469 (555)
95 smart00340 HALZ homeobox assoc 32.1 48 0.001 23.9 2.5 19 633-651 15-33 (44)
96 TIGR03548 mutarot_permut cycli 32.0 3.5E+02 0.0075 28.4 10.4 17 138-155 116-132 (323)
97 KOG4424 Predicted Rho/Rac guan 30.5 43 0.00093 37.9 3.1 59 427-493 395-455 (623)
98 PF07334 IFP_35_N: Interferon- 29.7 51 0.0011 27.1 2.6 23 631-653 1-23 (76)
99 PF06739 SBBP: Beta-propeller 28.9 58 0.0013 22.8 2.5 18 309-326 15-32 (38)
100 KOG2164 Predicted E3 ubiquitin 27.9 22 0.00048 39.5 0.4 52 429-490 186-237 (513)
101 PF14803 Nudix_N_2: Nudix N-te 27.7 33 0.00072 23.6 1.1 30 456-487 2-31 (34)
102 KOG1034 Transcriptional repres 27.4 1.5E+02 0.0033 31.3 6.3 57 89-153 323-381 (385)
103 PLN03215 ascorbic acid mannose 27.2 2.3E+02 0.005 30.8 7.9 60 79-153 163-225 (373)
104 PF05377 FlaC_arch: Flagella a 26.9 43 0.00093 25.8 1.6 28 630-657 14-41 (55)
105 PF12709 Kinetocho_Slk19: Cent 26.7 61 0.0013 27.4 2.6 24 631-654 50-73 (87)
106 COG5509 Uncharacterized small 26.4 70 0.0015 24.9 2.7 24 631-654 26-49 (65)
107 PRK00420 hypothetical protein; 26.2 44 0.00094 29.8 1.8 25 430-454 24-48 (112)
108 TIGR03300 assembly_YfgL outer 25.5 4.9E+02 0.011 27.8 10.4 15 193-207 362-376 (377)
109 TIGR02300 FYDLN_acid conserved 25.2 43 0.00092 30.4 1.6 26 431-456 11-36 (129)
110 PF09538 FYDLN_acid: Protein o 25.0 41 0.00089 29.7 1.5 10 479-488 27-36 (108)
111 PF12711 Kinesin-relat_1: Kine 24.8 74 0.0016 26.9 2.8 23 632-654 19-41 (86)
112 PF00170 bZIP_1: bZIP transcri 24.3 69 0.0015 25.1 2.5 25 632-656 35-59 (64)
113 PF09006 Surfac_D-trimer: Lung 24.3 64 0.0014 23.8 2.0 16 641-656 3-18 (46)
114 PLN02193 nitrile-specifier pro 24.2 1E+03 0.022 26.5 15.1 17 138-155 271-287 (470)
115 KOG3795 Uncharacterized conser 24.2 51 0.0011 31.3 2.0 21 444-464 13-36 (230)
116 PF09889 DUF2116: Uncharacteri 24.1 30 0.00065 27.0 0.4 29 446-492 3-32 (59)
117 KOG4196 bZIP transcription fac 23.4 71 0.0015 29.0 2.6 24 632-655 76-99 (135)
118 PF08826 DMPK_coil: DMPK coile 23.2 83 0.0018 24.8 2.7 25 632-656 34-58 (61)
119 KOG0293 WD40 repeat-containing 23.0 1E+03 0.023 26.2 14.5 28 237-274 443-470 (519)
120 PRK00432 30S ribosomal protein 22.8 54 0.0012 24.7 1.5 27 430-456 21-47 (50)
121 TIGR01063 gyrA DNA gyrase, A s 22.4 1.4E+03 0.031 27.6 19.4 215 134-379 543-770 (800)
122 PF06305 DUF1049: Protein of u 22.0 87 0.0019 24.6 2.7 24 633-656 44-67 (68)
123 PRK00888 ftsB cell division pr 21.9 77 0.0017 27.8 2.6 25 632-656 36-60 (105)
124 PRK15422 septal ring assembly 21.8 72 0.0016 26.4 2.1 20 632-651 27-46 (79)
125 PF03604 DNA_RNApol_7kD: DNA d 21.5 63 0.0014 21.9 1.5 24 431-454 2-25 (32)
126 PF04762 IKI3: IKI3 family; I 21.4 1.6E+03 0.035 27.7 17.0 203 127-375 426-636 (928)
127 KOG0971 Microtubule-associated 21.2 1.2E+03 0.025 28.6 12.2 16 406-421 29-44 (1243)
128 KOG3576 Ovo and related transc 21.2 22 0.00047 34.8 -1.1 37 428-464 144-191 (267)
129 COG4257 Vgb Streptogramin lyas 21.1 7.7E+02 0.017 25.8 9.7 140 135-323 61-205 (353)
130 KOG4693 Uncharacterized conser 21.0 3.4E+02 0.0073 28.1 7.1 18 25-42 81-98 (392)
131 PF10367 Vps39_2: Vacuolar sor 20.8 72 0.0016 27.4 2.2 33 427-462 76-108 (109)
132 PF14445 Prok-RING_2: Prokaryo 20.8 18 0.00038 27.0 -1.4 33 429-463 7-39 (57)
133 cd00200 WD40 WD40 domain, foun 20.6 7.4E+02 0.016 23.5 27.9 107 77-210 11-123 (289)
134 KOG0646 WD40 repeat protein [G 20.3 1.2E+03 0.026 25.9 15.3 157 15-208 85-245 (476)
135 KOG1829 Uncharacterized conser 20.1 51 0.0011 37.8 1.3 67 427-493 338-408 (580)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=4e-48 Score=404.60 Aligned_cols=364 Identities=25% Similarity=0.485 Sum_probs=293.8
Q ss_pred cccCCCCcEEEEcCCCCCCccCCCCCCCccccccccccCCceeeccc--CCCCeEEEEecCCeEEEEEcCCcEEEEeCCC
Q 006205 27 DDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESA--VVLDVQNIACGGRHAALVNKQGEVFSWGEES 104 (657)
Q Consensus 27 ~~l~~~G~Vy~WG~n~~~G~LG~g~~~~~~~~~~~~~~~~P~~i~~~--~~~~I~~Ia~G~~h~~~lt~~G~Vy~wG~n~ 104 (657)
.....-++||+||.|. ..+||+|.+. .....|...... ....|++++||+.|+++|+.||.||+||.|.
T Consensus 62 ~~~~~~~~v~~~Gsn~-~~eLGlg~de--------~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~ 132 (476)
T COG5184 62 HLLVKMASVYSWGSNG-MNELGLGNDE--------TKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDND 132 (476)
T ss_pred hhhhheeeeEEEecCc-ceeeccCCch--------hcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCc
Confidence 5678889999999999 9999999843 235667776655 4578999999999999999999999999999
Q ss_pred CCCcCCCCC----------------CCcccceEecc----CCCCcEEEEEeCCceEEEEEcCCcEEEEcCCCCCCCccCC
Q 006205 105 GGRLGHGVD----------------SDVLHPKLIDA----LSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGH 164 (657)
Q Consensus 105 ~GqLG~g~~----------------~~~~~P~~v~~----l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~ 164 (657)
.|+||.... .....|..|.. ....+|++++||++++++|+++|+||.||.+. .+.++.
T Consensus 133 ~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r--~~e~~~ 210 (476)
T COG5184 133 DGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFR--CGELGQ 210 (476)
T ss_pred ccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCcc--cccccc
Confidence 999998761 12456777775 22348999999999999999999999999984 455555
Q ss_pred C--CCcc----eeeeeeecCCCCCceEEEEeeCCceEEEEecCCcEEEEecCCCCccCCCCCcccccceeeeccCCC-eE
Q 006205 165 G--NEVS----HWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGL-RT 237 (657)
Q Consensus 165 ~--~~~~----~~~P~~v~~~l~~~~I~~Ia~G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~-~I 237 (657)
+ .... +.+|.++. ...|+++++|.+|.++|+++|+||+||+|.+||||....+....+..+..+... .|
T Consensus 211 g~~~~s~k~~~~~~p~~v~----~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i 286 (476)
T COG5184 211 GSYKNSQKTSIQFTPLKVP----KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNI 286 (476)
T ss_pred ccccccccceeeeeeeecC----chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhh
Confidence 5 2222 34555543 457999999999999999999999999999999999877666555555433322 37
Q ss_pred EEEEeCCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCC----CceeecEEEeecCCCCeEEEEccCcEEEE
Q 006205 238 VRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDK----EAKLVPTCVAALVEPNFCRVACGHSLTVA 313 (657)
Q Consensus 238 ~~Ia~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~----~~~~~P~~v~~l~~~~i~~I~~G~~~t~a 313 (657)
+.|+||.+|++||. .+|++|+||.|-+||||.+.. .....|+....+.+..|.+|++|..|+++
T Consensus 287 ~~vacG~~h~~al~------------~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~ 354 (476)
T COG5184 287 KYVACGKDHSLALD------------EDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLI 354 (476)
T ss_pred hhcccCcceEEEEc------------CCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEE
Confidence 89999999999998 599999999999999999821 22456666667777789999999999999
Q ss_pred EecCCcEEEEeCCCCCCCCCCCCCC---CcceeeccccCCCCEEEEEEccccccccccCCeEEEEecCCCCCCCCCCCC-
Q 006205 314 LTTSGHVYTMGSPVYGQLGNPQADG---KLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTD- 389 (657)
Q Consensus 314 Lt~~G~Vy~wG~n~~GqLG~~~~~~---~~p~~v~~~l~~~~V~~Ia~G~~ht~aLt~~G~vy~WG~n~~GqLG~g~~~- 389 (657)
|..+|.||.||+++.+|||.+.... ..|..+. ....+.+|+||..|+++.+.+|+||.||.|++|+||.|+..
T Consensus 355 L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls---~~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~ 431 (476)
T COG5184 355 LRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLS---VAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEA 431 (476)
T ss_pred EecCceEEEecCCccccccCcccceeecCCccccc---cccceEEEEecCccceeeccCCceEEecCchhhhccCCchhh
Confidence 9999999999999999999987332 1222222 13459999999999999999999999999999999999755
Q ss_pred CCcccEEecc--cCCCcEEEEEcCCCceeeeee
Q 006205 390 DRNSPSLVEA--LKDKQVKSIACGTNFTAAICL 420 (657)
Q Consensus 390 ~~~~P~~V~~--l~~~~v~~Ia~G~~hT~al~~ 420 (657)
+...|+++.. +....++..-||.++.+..-.
T Consensus 432 ~~~~pt~i~~~~~~~~~~i~~g~~~~~~v~~~~ 464 (476)
T COG5184 432 DVLVPTLIRQPLLSGHNIILAGYGNQFSVIEET 464 (476)
T ss_pred hccccccccccccCCCceEEeccCcceEEEecc
Confidence 4667888863 677788888888888776643
No 2
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=3.8e-42 Score=337.57 Aligned_cols=361 Identities=25% Similarity=0.456 Sum_probs=301.3
Q ss_pred CCCCcEEEEcCCCCCCccCCCCCCCccccccccccCCceeecccCCCCeEEEEec--CCeEEEEEcCCcEEEEeCCCCCC
Q 006205 30 DALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACG--GRHAALVNKQGEVFSWGEESGGR 107 (657)
Q Consensus 30 ~~~G~Vy~WG~n~~~G~LG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~I~~Ia~G--~~h~~~lt~~G~Vy~wG~n~~Gq 107 (657)
..-|++...|... ..+.|.-+- .......-|.++..+...+|+-|+.| ..|+++|+-+|+.|+||.|..||
T Consensus 17 ~~~g~ml~~g~v~-wd~tgkRd~------~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQ 89 (443)
T KOG1427|consen 17 EKGGEMLFCGAVA-WDITGKRDG------AMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQ 89 (443)
T ss_pred cCCccEEEeccch-hhhhccccc------ccccccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCc
Confidence 3457888888877 666664431 11235667888888888889999987 57999999999999999999999
Q ss_pred cCCCCCCCcccceEeccCCCCcEEEEEeCCceEEEEEcCCcEEEEcCCCCCCCccCCCCCcce-eeeeeecCCCCCceEE
Q 006205 108 LGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSH-WVPKRVNGPLEGIHVS 186 (657)
Q Consensus 108 LG~g~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~~~~~~~-~~P~~v~~~l~~~~I~ 186 (657)
||+++......|+.|..|...+|++.+||++|+++||++|.||.+|.| .+||||.++.... ..|..+. ..+..|+
T Consensus 90 LGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeN--K~GQlGlgn~~~~v~s~~~~~--~~~~~v~ 165 (443)
T KOG1427|consen 90 LGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGEN--KYGQLGLGNAKNEVESTPLPC--VVSDEVT 165 (443)
T ss_pred cCccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEeccc--ccccccccccccccccCCCcc--ccCccce
Confidence 999998889999999999999999999999999999999999999999 6699999986532 2222221 1244799
Q ss_pred EEeeCCceEEEEecCCcEEEEecCCCCccCCCCCcc--------------cccceeeeccCCCeEEEEEeCCCeeEEEEE
Q 006205 187 SISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKS--------------VSIPREVESLKGLRTVRAACGVWHTAAVVE 252 (657)
Q Consensus 187 ~Ia~G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~--------------~~~P~~v~~l~~~~I~~Ia~G~~hs~al~e 252 (657)
.|+||.++++.|+..+.+.++|...||||||+.... ...|..|..+.++.|++++||.+|++|+.
T Consensus 166 ~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd- 244 (443)
T KOG1427|consen 166 NVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVD- 244 (443)
T ss_pred eeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeeec-
Confidence 999999999999999999999999999999985432 33566777888999999999999999998
Q ss_pred eeecCCCccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeecCC--CCeEEEEccCcEEEEEecCCcEEEEeCCCCCC
Q 006205 253 VMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVE--PNFCRVACGHSLTVALTTSGHVYTMGSPVYGQ 330 (657)
Q Consensus 253 ~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~~--~~i~~I~~G~~~t~aLt~~G~Vy~wG~n~~Gq 330 (657)
++++||+||.+-||+|||...++...|..+..+.- .--.++.||+..++++.+-|.+|.||.+..
T Consensus 245 -----------~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~-- 311 (443)
T KOG1427|consen 245 -----------KNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKN-- 311 (443)
T ss_pred -----------CCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeecccc--
Confidence 69999999999999999999999999998886643 345789999999999999999999997653
Q ss_pred CCCCCCCCCcceeeccccCCCCEEEEEEccccccccccCCeEEEEecCCCCCCCCCC--CCCCcccEEecccCCCcEEEE
Q 006205 331 LGNPQADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGD--TDDRNSPSLVEALKDKQVKSI 408 (657)
Q Consensus 331 LG~~~~~~~~p~~v~~~l~~~~V~~Ia~G~~ht~aLt~~G~vy~WG~n~~GqLG~g~--~~~~~~P~~V~~l~~~~v~~I 408 (657)
...+..+|.++.+ +.+..+..+.||..|.++ ..|.....||...+|.++-|. ......|..|..+.+.+|..|
T Consensus 312 ---~ge~~mypkP~~d-lsgwnl~~~~~~~~h~~v-~ad~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l~~i~v~~V 386 (443)
T KOG1427|consen 312 ---NGEDWMYPKPMMD-LSGWNLRWMDSGSMHHFV-GADSSCISWGHAQYGELLGGPNGQKSSAAPKKVDMLEGIHVMGV 386 (443)
T ss_pred ---CcccccCCCchhh-cCCccCCCcCccceeeee-cccccccccccccccccccCccccccccCccccchhcceeccce
Confidence 2345567777774 778889999999999775 567789999998887765443 344567999999999999999
Q ss_pred EcCCCceeeeee
Q 006205 409 ACGTNFTAAICL 420 (657)
Q Consensus 409 a~G~~hT~al~~ 420 (657)
+||..|+++|+.
T Consensus 387 amGysHs~vivd 398 (443)
T KOG1427|consen 387 AMGYSHSMVIVD 398 (443)
T ss_pred eeccceEEEEEc
Confidence 999999999974
No 3
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=7.2e-41 Score=350.25 Aligned_cols=316 Identities=30% Similarity=0.544 Sum_probs=260.5
Q ss_pred CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCc-ccceEeccC--CCCcEEEEEeCCceEEEEEcCCcEEEEcCCCCCCCc
Q 006205 85 GRHAALVNKQGEVFSWGEESGGRLGHGVDSDV-LHPKLIDAL--SNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGL 161 (657)
Q Consensus 85 ~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~-~~P~~v~~l--~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n~~~~Gq 161 (657)
..|...++.-..||+||.|...+||.+.+... ..|+++... +...|++++||..|+++|++||+||+||.| ..|+
T Consensus 58 ~~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N--~~G~ 135 (476)
T COG5184 58 NKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDN--DDGA 135 (476)
T ss_pred ccchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccC--cccc
Confidence 45666889999999999999999999987765 889988876 567899999999999999999999999999 7799
Q ss_pred cCCCCC----------------cceeeeeeecC---CCCCceEEEEeeCCceEEEEecCCcEEEEecCCCCccCCCCCcc
Q 006205 162 LGHGNE----------------VSHWVPKRVNG---PLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKS 222 (657)
Q Consensus 162 LG~~~~----------------~~~~~P~~v~~---~l~~~~I~~Ia~G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~ 222 (657)
||.... .....|.++.. .....+|++++||++++++|+++|.||.||....+.++.+....
T Consensus 136 Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~ 215 (476)
T COG5184 136 LGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKN 215 (476)
T ss_pred cccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccc
Confidence 997761 12457777765 12244799999999999999999999999998888888874332
Q ss_pred c------ccceeeeccCCCeEEEEEeCCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeec
Q 006205 223 V------SIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAAL 296 (657)
Q Consensus 223 ~------~~P~~v~~l~~~~I~~Ia~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l 296 (657)
. ..|..+. ...|+++++|..|.++++ .+|++|+||+|.+||||....+....+..+..+
T Consensus 216 s~k~~~~~~p~~v~---~~~i~qla~G~dh~i~lt------------~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~ 280 (476)
T COG5184 216 SQKTSIQFTPLKVP---KKAIVQLAAGADHLIALT------------NEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDP 280 (476)
T ss_pred cccceeeeeeeecC---chheeeeccCCceEEEEe------------cCCcEEEecCCcccccCCchhhhcccccccCCh
Confidence 2 3333333 457999999999999999 699999999999999999887776666655533
Q ss_pred C-CCCeEEEEccCcEEEEEecCCcEEEEeCCCCCCCCCCCCCCCc------ceeeccccCCCCEEEEEEccccccccccC
Q 006205 297 V-EPNFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKL------PNRVEGKLSKSFVEEIACGSYHVAVLTSK 369 (657)
Q Consensus 297 ~-~~~i~~I~~G~~~t~aLt~~G~Vy~wG~n~~GqLG~~~~~~~~------p~~v~~~l~~~~V~~Ia~G~~ht~aLt~~ 369 (657)
. -..|+.|+||.+|++||+++|+||+||.|.+||||.+ .+... |.... .+....|..|++|..|+++|..+
T Consensus 281 f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~-~~~~~~a~~tk~~~~~-~~~~~~i~~is~ge~H~l~L~~~ 358 (476)
T COG5184 281 FAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAG-SDGEIGALTTKPNYKQ-LLSGVTICSISAGESHSLILRKD 358 (476)
T ss_pred hhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccC-cccccceeeccccccc-cCCCceEEEEecCcceEEEEecC
Confidence 2 2457899999999999999999999999999999999 44333 32222 24455589999999999999999
Q ss_pred CeEEEEecCCCCCCCCCC--CCCCcccEEecccCCCcEEEEEcCCCceeeeeee
Q 006205 370 TEVYTWGKGANGRLGHGD--TDDRNSPSLVEALKDKQVKSIACGTNFTAAICLH 421 (657)
Q Consensus 370 G~vy~WG~n~~GqLG~g~--~~~~~~P~~V~~l~~~~v~~Ia~G~~hT~al~~~ 421 (657)
|.||+||++..||||+.+ +.+...|+++... .++.+|+||..|+++.+..
T Consensus 359 G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~~--~~~~~v~~gt~~~~~~t~~ 410 (476)
T COG5184 359 GTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVA--IKLEQVACGTHHNIARTDD 410 (476)
T ss_pred ceEEEecCCccccccCcccceeecCCccccccc--cceEEEEecCccceeeccC
Confidence 999999999999999998 6666667766533 3699999999999999754
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=3.6e-38 Score=309.59 Aligned_cols=316 Identities=26% Similarity=0.453 Sum_probs=261.6
Q ss_pred ccCCC--Cc-cccCCCCcEEEEcCCCCCCccCCCCCCCccccccccccCCceeecccCCCCeEEEEecCCeEEEEEcCCc
Q 006205 20 SSQGS--GH-DDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVNKQGE 96 (657)
Q Consensus 20 ~s~G~--~~-~~l~~~G~Vy~WG~n~~~G~LG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~I~~Ia~G~~h~~~lt~~G~ 96 (657)
+..|+ +| ..|+-+|+.|.||.|. .||||+|+ ..-+..|+.|+.+...+|++.+||++|+++||++|+
T Consensus 61 VasG~~aaH~vli~megk~~~wGRNe-kGQLGhgD---------~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~ 130 (443)
T KOG1427|consen 61 VASGCAAAHCVLIDMEGKCYTWGRNE-KGQLGHGD---------MKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQ 130 (443)
T ss_pred EecccchhhEEEEecccceeecccCc-cCccCccc---------hhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCc
Confidence 34454 44 6899999999999999 99999997 356778999999999999999999999999999999
Q ss_pred EEEEeCCCCCCcCCCCCCC-cccceEeccCCCCcEEEEEeCCceEEEEEcCCcEEEEcCCCCCCCccCCCCCcce-----
Q 006205 97 VFSWGEESGGRLGHGVDSD-VLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSH----- 170 (657)
Q Consensus 97 Vy~wG~n~~GqLG~g~~~~-~~~P~~v~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~~~~~~~----- 170 (657)
||+||.|.+||||.+.... +..|.++. .....|..|+||..+++.|+..+.|.++|.. .+||||++.+...
T Consensus 131 v~afGeNK~GQlGlgn~~~~v~s~~~~~-~~~~~v~~v~cga~ftv~l~~~~si~t~glp--~ygqlgh~td~~~~~~~~ 207 (443)
T KOG1427|consen 131 VLAFGENKYGQLGLGNAKNEVESTPLPC-VVSDEVTNVACGADFTVWLSSTESILTAGLP--QYGQLGHGTDNEFNMKDS 207 (443)
T ss_pred EEEecccccccccccccccccccCCCcc-ccCccceeeccccceEEEeecccceeecCCc--cccccccCcchhhccccc
Confidence 9999999999999998554 33333332 3345899999999999999999999999999 6699999976532
Q ss_pred ---------eeeeeecCCCCCceEEEEeeCCceEEEEecCCcEEEEecCCCCccCCCCCcccccceeeeccC--CCeEEE
Q 006205 171 ---------WVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLK--GLRTVR 239 (657)
Q Consensus 171 ---------~~P~~v~~~l~~~~I~~Ia~G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~--~~~I~~ 239 (657)
..|..|. ++++++|++++||.+|+++++++++||+||.+-||.|||...+....|++++.+. +.--..
T Consensus 208 ~~~~~~e~~pr~~~i~-~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~ 286 (443)
T KOG1427|consen 208 SVRLAYEAQPRPKAIA-SLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPN 286 (443)
T ss_pred cceeeeecCCCccccc-cccceeeEEEeccCcceeeecCCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcc
Confidence 2333333 4788999999999999999999999999999999999999999999999887553 444667
Q ss_pred EEeCCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeecCCCCeEEEEccCcEEEEEecCCc
Q 006205 240 AACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGH 319 (657)
Q Consensus 240 Ia~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~~~~i~~I~~G~~~t~aLt~~G~ 319 (657)
+.||+..++.+.| -|.||.||.+.. ..+.-..|..+..+...++..+.|+..|.++ ..|..
T Consensus 287 ~~~g~t~Sl~v~e------------~G~Lf~~g~~k~------~ge~~mypkP~~dlsgwnl~~~~~~~~h~~v-~ad~s 347 (443)
T KOG1427|consen 287 AILGYTGSLNVAE------------GGQLFMWGKIKN------NGEDWMYPKPMMDLSGWNLRWMDSGSMHHFV-GADSS 347 (443)
T ss_pred eeeecccceeecc------------cceeEEeecccc------CcccccCCCchhhcCCccCCCcCccceeeee-ccccc
Confidence 8899999999884 899999998764 3456677888888999999999999988655 56668
Q ss_pred EEEEeCCCCCCCCC-CC--CCCCcceeeccccCCCCEEEEEEccccccccccC
Q 006205 320 VYTMGSPVYGQLGN-PQ--ADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSK 369 (657)
Q Consensus 320 Vy~wG~n~~GqLG~-~~--~~~~~p~~v~~~l~~~~V~~Ia~G~~ht~aLt~~ 369 (657)
...||...+|.++- ++ .....|..+. .+.+.+|.+|++|..|+++|..+
T Consensus 348 ~i~wg~~~~g~~lggp~~Qkss~~Pk~v~-~l~~i~v~~VamGysHs~vivd~ 399 (443)
T KOG1427|consen 348 CISWGHAQYGELLGGPNGQKSSAAPKKVD-MLEGIHVMGVAMGYSHSMVIVDR 399 (443)
T ss_pred ccccccccccccccCccccccccCccccc-hhcceeccceeeccceEEEEEcc
Confidence 99999988876653 33 3334676665 47778899999999999998654
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.94 E-value=7.9e-27 Score=254.07 Aligned_cols=308 Identities=21% Similarity=0.316 Sum_probs=230.6
Q ss_pred CccccCCCCcEEEEcCCCCCCccCCCCCCCccccccccccCCceeecccC--CCCeEEEEecCCeEEEEEcCCcEEEEeC
Q 006205 25 GHDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAV--VLDVQNIACGGRHAALVNKQGEVFSWGE 102 (657)
Q Consensus 25 ~~~~l~~~G~Vy~WG~n~~~G~LG~g~~~~~~~~~~~~~~~~P~~i~~~~--~~~I~~Ia~G~~h~~~lt~~G~Vy~wG~ 102 (657)
-+..+|...+||+||.|. +..||.|+ ......|..+..+. +.=+.+|+.+..|++++++.|+||++|-
T Consensus 134 i~~~~d~pndvy~wG~N~-N~tLGign---------~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGh 203 (1267)
T KOG0783|consen 134 IHPVLDLPNDVYGWGTNV-NNTLGIGN---------GKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGH 203 (1267)
T ss_pred cccccCCccceeEecccc-cccccccC---------CCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEecc
Confidence 346788889999999999 99999998 34556677776543 3337889999999999999999999999
Q ss_pred CCCCCcCCCCCCCcccceEeccCCCCcEEEEEeCCceEEEEEcCCcEEEEcCCCCCCCccCCCCCcc-eeeeeeecCC-C
Q 006205 103 ESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVS-HWVPKRVNGP-L 180 (657)
Q Consensus 103 n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~~~~~~-~~~P~~v~~~-l 180 (657)
+.+|+||+|+......|++|+.|.+.+|.+|++...|+++||++|-||+||.| ..+|||..+... ...|.+|... +
T Consensus 204 G~GGRlG~gdeq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN--~~hqLG~~~~~~~~~~p~qI~a~r~ 281 (1267)
T KOG0783|consen 204 GAGGRLGFGDEQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLN--GSHQLGLSNDELKKDDPIQITARRI 281 (1267)
T ss_pred CCCCccCcCcccccccccccccccccceEEEEeecceeEEEeecceEEEeecC--cccccCCcCchhhcCchhhhhhHhh
Confidence 99999999999999999999999999999999999999999999999999999 779999887653 3344444321 1
Q ss_pred CC-ceEEEEeeCCceEEEEecCCcEEEEecCCCCccCCCCC-cccccceeeeccCCCeEEEEEeCCCeeEEEEEeeecCC
Q 006205 181 EG-IHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDR-KSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNS 258 (657)
Q Consensus 181 ~~-~~I~~Ia~G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~-~~~~~P~~v~~l~~~~I~~Ia~G~~hs~al~e~~~~~s 258 (657)
.+ ..|+.|++|..|+++.|+. .||+||.| .||||..+. ..+..|+.+..+ ...|.-|+|...-|+++++
T Consensus 282 kg~~~iIgvaAg~~hsVawt~~-~VY~wGlN-~GQlGi~~n~~~Vt~Pr~l~~~-~~~v~~v~a~~~ATVc~~~------ 352 (1267)
T KOG0783|consen 282 KGFKQIIGVAAGKSHSVAWTDT-DVYSWGLN-NGQLGISDNISVVTTPRRLAGL-LSPVIHVVATTRATVCLLQ------ 352 (1267)
T ss_pred cchhhhhhhhcccceeeeeecc-eEEEeccc-CceecCCCCCceeecchhhccc-ccceEEEEecCccEEEEec------
Confidence 22 2799999999999999976 79999987 699998755 456778766433 3478899999999999984
Q ss_pred CccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEee----cCCCCeEEEEccCcEEEEEecCCcEEEEeCCCCCCCCCC
Q 006205 259 SSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAA----LVEPNFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNP 334 (657)
Q Consensus 259 ~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~----l~~~~i~~I~~G~~~t~aLt~~G~Vy~wG~n~~GqLG~~ 334 (657)
++.+|++-+-..-.+ ..+.....-..|.. +.-.++.+..+...-.++||+-|+||.|-++..-.-
T Consensus 353 ------~~~i~~~ady~~~k~--~~n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~~~--- 421 (1267)
T KOG0783|consen 353 ------NNSIIAFADYNQVKL--PFNVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNSTRT--- 421 (1267)
T ss_pred ------CCcEEEEecccceec--CcchhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCcee---
Confidence 889998875332222 11111111122221 111345566667777899999999999986543110
Q ss_pred CCCCCcceeeccccCCCCEEEEEEccccccccccCCe
Q 006205 335 QADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTE 371 (657)
Q Consensus 335 ~~~~~~p~~v~~~l~~~~V~~Ia~G~~ht~aLt~~G~ 371 (657)
.-...|..+ ..|.+|+--.+..+++|.||.
T Consensus 422 -~c~ftp~r~------~~isdIa~~~N~~~~~t~dGc 451 (1267)
T KOG0783|consen 422 -SCKFTPLRI------FEISDIAWTANSLILCTRDGC 451 (1267)
T ss_pred -eeeccccee------eehhhhhhccceEEEEecCcc
Confidence 001122222 236678877788899999984
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.93 E-value=6e-26 Score=247.28 Aligned_cols=304 Identities=24% Similarity=0.381 Sum_probs=228.5
Q ss_pred EEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCC--CCcEEEEEeCCceEEEEEcCCcEEEEcCCCCCCCccCCCC
Q 006205 89 ALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALS--NMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGN 166 (657)
Q Consensus 89 ~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~--~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~~~ 166 (657)
.+++...+||+||.|.+..||+|.......|..|..+. +.-+.+|+.+.+|+++|++.|+||++|.+ .-|.||+|+
T Consensus 136 ~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG--~GGRlG~gd 213 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHG--AGGRLGFGD 213 (1267)
T ss_pred cccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccC--CCCccCcCc
Confidence 35666799999999999999999999999999998775 44578899999999999999999999999 679999999
Q ss_pred CcceeeeeeecCCCCCceEEEEeeCCceEEEEecCCcEEEEecCCCCccCCCCC-cccccceeeec--cCCC-eEEEEEe
Q 006205 167 EVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDR-KSVSIPREVES--LKGL-RTVRAAC 242 (657)
Q Consensus 167 ~~~~~~P~~v~~~l~~~~I~~Ia~G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~-~~~~~P~~v~~--l~~~-~I~~Ia~ 242 (657)
.....+|++|.+ +.+.+|.+|+....|+++||++|-||+||.|.++|||..+. .....|++|.. +++. .|+.|++
T Consensus 214 eq~~~iPkrV~g-L~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaA 292 (1267)
T KOG0783|consen 214 EQYNFIPKRVPG-LIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAA 292 (1267)
T ss_pred cccccccccccc-ccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhc
Confidence 999999999998 77889999999999999999999999999999999998754 34455666643 2233 6999999
Q ss_pred CCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCCc-eeecEEEeecCCCCeEEEEccCcEEEEEecCCcEE
Q 006205 243 GVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEA-KLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVY 321 (657)
Q Consensus 243 G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~-~~~P~~v~~l~~~~i~~I~~G~~~t~aLt~~G~Vy 321 (657)
|..|+++.+ +..||+||.|. ||||..+... ...|..+.. ....|.-|+|...-|+++++++.+|
T Consensus 293 g~~hsVawt-------------~~~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~~-~~~~v~~v~a~~~ATVc~~~~~~i~ 357 (1267)
T KOG0783|consen 293 GKSHSVAWT-------------DTDVYSWGLNN-GQLGISDNISVVTTPRRLAG-LLSPVIHVVATTRATVCLLQNNSII 357 (1267)
T ss_pred ccceeeeee-------------cceEEEecccC-ceecCCCCCceeecchhhcc-cccceEEEEecCccEEEEecCCcEE
Confidence 999999997 89999999975 9999876543 556755532 3467889999999999999999999
Q ss_pred EEeCCCCCCCCCCCCCCCcceeecccc--CCCCEEEEEEccccccccccCCeEEEEecCCCCCCCCCCCCCCcccEEecc
Q 006205 322 TMGSPVYGQLGNPQADGKLPNRVEGKL--SKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEA 399 (657)
Q Consensus 322 ~wG~n~~GqLG~~~~~~~~p~~v~~~l--~~~~V~~Ia~G~~ht~aLt~~G~vy~WG~n~~GqLG~g~~~~~~~P~~V~~ 399 (657)
++-.-..-.+-......+......+.+ ....+.+..+...-.++||+-|+||.|-.+..-. +.-...|..+-
T Consensus 358 ~~ady~~~k~~~n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~~-----~~c~ftp~r~~- 431 (1267)
T KOG0783|consen 358 AFADYNQVKLPFNVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNSTR-----TSCKFTPLRIF- 431 (1267)
T ss_pred EEecccceecCcchhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCce-----eeeecccceee-
Confidence 987533222221111111111111111 1233566666777789999999999997553211 11233444443
Q ss_pred cCCCcEEEEEcCCCceeeeee
Q 006205 400 LKDKQVKSIACGTNFTAAICL 420 (657)
Q Consensus 400 l~~~~v~~Ia~G~~hT~al~~ 420 (657)
.|.+|+--.+.-++++.
T Consensus 432 ----~isdIa~~~N~~~~~t~ 448 (1267)
T KOG0783|consen 432 ----EISDIAWTANSLILCTR 448 (1267)
T ss_pred ----ehhhhhhccceEEEEec
Confidence 34456555555555543
No 7
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.87 E-value=8.8e-21 Score=213.13 Aligned_cols=270 Identities=26% Similarity=0.377 Sum_probs=195.3
Q ss_pred cccCCCCcEEEEcCCCCCCccCCCCCCCccccccccccCCceeecccCCCCeEEEEecCCeEEEE--EcCCcEEEEeCCC
Q 006205 27 DDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALV--NKQGEVFSWGEES 104 (657)
Q Consensus 27 ~~l~~~G~Vy~WG~n~~~G~LG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~I~~Ia~G~~h~~~l--t~~G~Vy~wG~n~ 104 (657)
..-+..|+||.-|.....|..-.|.+. .+.. ...+|++|+.|-....++ ..+|-++.-|+..
T Consensus 492 ~iqa~sGKvYYaGn~t~~Gl~e~G~nW--------mEL~--------l~~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~k 555 (3738)
T KOG1428|consen 492 FIQARSGKVYYAGNGTRFGLFETGNNW--------MELC--------LPEPIVQISVGIDTIMFRSGAGHGWIASVDDKK 555 (3738)
T ss_pred hhhhcCccEEEecCccEEeEEccCCce--------EEec--------CCCceEEEEeccchhheeeccCcceEEeccCcc
Confidence 345788999999988855555445422 1111 224799999997655444 5566676666321
Q ss_pred -CCCcCCCCCCCcccceEeccCCCCcEEEEEeCCceEEEEEcCCcEEEEcCCCCCCCccCCCCCcceeeeeeecCCCCCc
Q 006205 105 -GGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGI 183 (657)
Q Consensus 105 -~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~~~~~~~~~P~~v~~~l~~~ 183 (657)
.|++ .++......+|+.|.+...---.+.++|++|..|.... ....-..+...+++.
T Consensus 556 ~~~~~-----------Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm-----------~~n~SSqmln~L~~~ 613 (3738)
T KOG1428|consen 556 RNGRL-----------RRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTM-----------RVNVSSQMLNGLDNV 613 (3738)
T ss_pred cccch-----------hhcCCCCcceeEEEeeeeEEEEEEccCCeEEeecceeE-----------EecchHHHhhccccc
Confidence 1111 22222234477777665555567899999999987632 000111122237788
Q ss_pred eEEEEeeCCceEEEEecCCcEEEEecCCCCccCCCCCc------------------------------------------
Q 006205 184 HVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRK------------------------------------------ 221 (657)
Q Consensus 184 ~I~~Ia~G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~------------------------------------------ 221 (657)
-|.+++.|..|.++++.+|.||+||-|..+|+|.-...
T Consensus 614 ~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~G 693 (3738)
T KOG1428|consen 614 MISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARG 693 (3738)
T ss_pred eeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccc
Confidence 89999999999999999999999999999999851000
Q ss_pred ---------------------------------------------------------ccccceeee---ccCCCeEEEEE
Q 006205 222 ---------------------------------------------------------SVSIPREVE---SLKGLRTVRAA 241 (657)
Q Consensus 222 ---------------------------------------------------------~~~~P~~v~---~l~~~~I~~Ia 241 (657)
....|..|. ..-++++.+|+
T Consensus 694 vaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVS 773 (3738)
T KOG1428|consen 694 VACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVS 773 (3738)
T ss_pred cccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEe
Confidence 000111111 11246899999
Q ss_pred eCCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeecCCCCeEEEEccCcEEEEEecCCcEE
Q 006205 242 CGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVY 321 (657)
Q Consensus 242 ~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~~~~i~~I~~G~~~t~aLt~~G~Vy 321 (657)
||..|++.|. ++++||++|.|.+||||+|+......|+.|..+.+..|+||++|.+||+++.+||.||
T Consensus 774 CG~~HtVlL~------------sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVF 841 (3738)
T KOG1428|consen 774 CGNFHTVLLA------------SDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVF 841 (3738)
T ss_pred ccCceEEEEe------------cCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEE
Confidence 9999999998 5999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCCCCCCCCC----cceeecc
Q 006205 322 TMGSPVYGQLGNPQADGK----LPNRVEG 346 (657)
Q Consensus 322 ~wG~n~~GqLG~~~~~~~----~p~~v~~ 346 (657)
+||.-..|||+.+..+.. .|.++.+
T Consensus 842 TFGaF~KGQL~RP~~e~~~WNA~Pe~v~~ 870 (3738)
T KOG1428|consen 842 TFGAFGKGQLARPAGEKAGWNAIPEKVSG 870 (3738)
T ss_pred EeccccCccccCccccccccccCCCcCCC
Confidence 999999999998875543 4555554
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.84 E-value=1.1e-19 Score=204.59 Aligned_cols=301 Identities=22% Similarity=0.269 Sum_probs=210.4
Q ss_pred CeEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeCCceEEEEEc--CCcEEEEcC
Q 006205 77 DVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTL--SGDLYTWGD 154 (657)
Q Consensus 77 ~I~~Ia~G~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~aLt~--dG~Vy~wG~ 154 (657)
.-+.+..+...+++-+.+|+||.-|... ++|.-.... ....+... .+|++|+.|-..+.++.- +|-++.-|+
T Consensus 480 qtv~L~~~RE~A~iqa~sGKvYYaGn~t--~~Gl~e~G~--nWmEL~l~--~~IVq~SVG~D~~~~~~~A~~G~I~~v~D 553 (3738)
T KOG1428|consen 480 QTVDLHFTREMAFIQARSGKVYYAGNGT--RFGLFETGN--NWMELCLP--EPIVQISVGIDTIMFRSGAGHGWIASVDD 553 (3738)
T ss_pred hheecccchhhhhhhhcCccEEEecCcc--EEeEEccCC--ceEEecCC--CceEEEEeccchhheeeccCcceEEeccC
Confidence 3556778889999999999999999654 344332222 22222222 489999999887777654 555665555
Q ss_pred CCCCCCccCCCCCcceeeeeeecCCCCCceEEEEeeCCceEEEEecCCcEEEEecCCCCccCCCCCcccccceeeeccCC
Q 006205 155 GTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKG 234 (657)
Q Consensus 155 n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~ 234 (657)
... .|.+ +-..|....+|+++.+...---.+.++|++|.+|..+.- .-.....+..|.+
T Consensus 554 ~k~-~~~~------------Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm~--------~n~SSqmln~L~~ 612 (3738)
T KOG1428|consen 554 KKR-NGRL------------RRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTMR--------VNVSSQMLNGLDN 612 (3738)
T ss_pred ccc-ccch------------hhcCCCCcceeEEEeeeeEEEEEEccCCeEEeecceeEE--------ecchHHHhhcccc
Confidence 421 1111 111133455788886655444678899999999854321 1112245567888
Q ss_pred CeEEEEEeCCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCCc----------------------------
Q 006205 235 LRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEA---------------------------- 286 (657)
Q Consensus 235 ~~I~~Ia~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~---------------------------- 286 (657)
.-|.+++.|..|+++++ .+|.||+||.|+.+|.|.-....
T Consensus 613 ~~isslAlGKsH~~av~------------rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~ 680 (3738)
T KOG1428|consen 613 VMISSLALGKSHGVAVT------------RNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTP 680 (3738)
T ss_pred ceeehhhccccceeEEE------------eCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCc
Confidence 89999999999999999 59999999999999988421000
Q ss_pred -----------------------------------------------------------------------eeecEEEee
Q 006205 287 -----------------------------------------------------------------------KLVPTCVAA 295 (657)
Q Consensus 287 -----------------------------------------------------------------------~~~P~~v~~ 295 (657)
..-|..|..
T Consensus 681 ~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~ 760 (3738)
T KOG1428|consen 681 SVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVIL 760 (3738)
T ss_pred chhhhcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheee
Confidence 000111111
Q ss_pred ---cCCCCeEEEEccCcEEEEEecCCcEEEEeCCCCCCCCCCCCCCC-cceeeccccCCCCEEEEEEccccccccccCCe
Q 006205 296 ---LVEPNFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGK-LPNRVEGKLSKSFVEEIACGSYHVAVLTSKTE 371 (657)
Q Consensus 296 ---l~~~~i~~I~~G~~~t~aLt~~G~Vy~wG~n~~GqLG~~~~~~~-~p~~v~~~l~~~~V~~Ia~G~~ht~aLt~~G~ 371 (657)
.-+.++.+|+||..|+++|.+|++||+||+|.+||||.++...+ .|+.+. .+.+..+++|++|.+|++++..||+
T Consensus 761 sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~-~~~~t~~vQVaAGSNHT~l~~~DGs 839 (3738)
T KOG1428|consen 761 SQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVI-LPSDTVIVQVAAGSNHTILRANDGS 839 (3738)
T ss_pred ccCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEE-cCCCCceEEEecCCCceEEEecCCc
Confidence 12346889999999999999999999999999999999987665 677776 4677789999999999999999999
Q ss_pred EEEEecCCCCCCCCCCCCC---CcccEEecccC---CCcEEEEEcCCCceee
Q 006205 372 VYTWGKGANGRLGHGDTDD---RNSPSLVEALK---DKQVKSIACGTNFTAA 417 (657)
Q Consensus 372 vy~WG~n~~GqLG~g~~~~---~~~P~~V~~l~---~~~v~~Ia~G~~hT~a 417 (657)
||++|.=..||||..--+. ...|.+|..+- +.....|.+.++.+++
T Consensus 840 VFTFGaF~KGQL~RP~~e~~~WNA~Pe~v~~~G~~f~~~A~WIGAdGDss~i 891 (3738)
T KOG1428|consen 840 VFTFGAFGKGQLARPAGEKAGWNAIPEKVSGFGPGFNAFAGWIGADGDSSII 891 (3738)
T ss_pred EEEeccccCccccCccccccccccCCCcCCCCCccccccceeeccCCCccee
Confidence 9999999999999654332 34577776442 3355667666665554
No 9
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=99.36 E-value=1.8e-13 Score=111.36 Aligned_cols=67 Identities=40% Similarity=0.900 Sum_probs=47.0
Q ss_pred ccccccCcccCCCCCCCCCcccccccccccccceeeccCCCccccccccCCCCCCCeeeCcchHHhhh
Q 006205 422 KWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLR 489 (657)
Q Consensus 422 kwv~~~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~ 489 (657)
.|+++.+...|..|..+|+ +.++||||+.||.+||..|+..+..++.......+++|||+.||..++
T Consensus 2 ~W~~d~~~~~C~~C~~~F~-~~~rrhhCr~CG~~vC~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~ 68 (69)
T PF01363_consen 2 HWVPDSEASNCMICGKKFS-LFRRRHHCRNCGRVVCSSCSSQRIPLPTPSSGSGEPVRVCDSCYSKLQ 68 (69)
T ss_dssp -SSSGGG-SB-TTT--B-B-SSS-EEE-TTT--EEECCCS-EEEEET--GGTESEEEEE-HHHHHHHH
T ss_pred CcCCCCCCCcCcCcCCcCC-CceeeEccCCCCCEECCchhCCEEcccccccCCCCcCEECHHHHHHhc
Confidence 5999999999999999998 667789999999999999999999887333344689999999999885
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.24 E-value=7.7e-12 Score=95.26 Aligned_cols=50 Identities=34% Similarity=0.725 Sum_probs=47.8
Q ss_pred CCeEEEEecCCCCCCC-CCCCCCCcccEEecccCCCcEEEEEcCCCceeee
Q 006205 369 KTEVYTWGKGANGRLG-HGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAI 418 (657)
Q Consensus 369 ~G~vy~WG~n~~GqLG-~g~~~~~~~P~~V~~l~~~~v~~Ia~G~~hT~al 418 (657)
||+||+||.|.+|||| .++......|++|+.+.+.+|++|+||.+||++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 8888899999999999999999999999999987
No 11
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=4.2e-13 Score=149.67 Aligned_cols=188 Identities=29% Similarity=0.505 Sum_probs=150.3
Q ss_pred CceeecccCCCCeEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeCCceEEEEEc
Q 006205 66 LPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTL 145 (657)
Q Consensus 66 ~P~~i~~~~~~~I~~Ia~G~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~aLt~ 145 (657)
.|+.+..+...+|.+++||.+|+++++..|++|+||.|.+||+|++.......|.+++.+.+....+|++|..|++++..
T Consensus 4 ~~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~ 83 (850)
T KOG0941|consen 4 APRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSS 83 (850)
T ss_pred hhHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhh
Confidence 35555555566899999999999999999999999999999999996554445999999999999999999999998875
Q ss_pred CCcEEEEcCCCCCCCccCCCCCcceeeeeeecCCCCCceEEEEeeCCceEEEEecCCcEEEEecCCCCccCCCCCccccc
Q 006205 146 SGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSI 225 (657)
Q Consensus 146 dG~Vy~wG~n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~ 225 (657)
|+++++.+|.++++|....||+|+.-......
T Consensus 84 ------------------------------------------------~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~ 115 (850)
T KOG0941|consen 84 ------------------------------------------------HTVLLTDEGKVFSFGAGSTGQLGHSLTENEVL 115 (850)
T ss_pred ------------------------------------------------chhhcchhccccccCCcccccccccccccccc
Confidence 99999999999999999999999977777788
Q ss_pred ceeeeccCCCeEEEEEeCCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeec------CCC
Q 006205 226 PREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAAL------VEP 299 (657)
Q Consensus 226 P~~v~~l~~~~I~~Ia~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l------~~~ 299 (657)
|..+..+-+..+..|+||..|+.++.+ .-|+.|..|.+..| +.....+..-..+ ...
T Consensus 116 ~~~v~e~i~~~~t~ia~~~~ht~a~v~-----------~l~qsf~~~~~~sG------k~~i~s~s~~~~l~~~d~~~~~ 178 (850)
T KOG0941|consen 116 PLLVLELIGSRVTRIACVRGHTLAIVP-----------RLGQSFSFGKGASG------KGVIVSLSGEDLLRDHDSEKDH 178 (850)
T ss_pred cHHHHHHHhhhhHHHHHHHHHHHhhhh-----------hhcceeecccCCCC------CceeeccchhhhcccccHHHHH
Confidence 888887778899999999999999986 67999999988776 1111111110001 112
Q ss_pred CeEEEEccCcEEEEEecCC
Q 006205 300 NFCRVACGHSLTVALTTSG 318 (657)
Q Consensus 300 ~i~~I~~G~~~t~aLt~~G 318 (657)
.+.++..|...++.|...+
T Consensus 179 ~~~~~~~g~dq~~~l~~~~ 197 (850)
T KOG0941|consen 179 RCSLAFAGGDQTFSLSSKG 197 (850)
T ss_pred HHHHHhcCCCceEEEEeec
Confidence 3445678888887776554
No 13
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=1.4e-11 Score=135.81 Aligned_cols=65 Identities=38% Similarity=0.844 Sum_probs=58.1
Q ss_pred cCcccCCCCCCCCCcccccccccccccceeeccCCCccccccccCCCCCCCeeeCcchHHhhhccccC
Q 006205 427 VDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTFDT 494 (657)
Q Consensus 427 ~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~~~~~~ 494 (657)
.|...|..|+..|++|. ++|||++||++||..|+++...+|.++. .+++||||.||+.+.+...+
T Consensus 163 ~D~~~C~rCr~~F~~~~-rkHHCr~CG~vFC~qcss~s~~lP~~Gi--~~~VRVCd~C~E~l~~~s~~ 227 (634)
T KOG1818|consen 163 IDSEECLRCRVKFGLTN-RKHHCRNCGQVFCGQCSSKSLTLPKLGI--EKPVRVCDSCYELLTRASVG 227 (634)
T ss_pred ccccccceeeeeeeecc-ccccccccchhhccCccccccCcccccc--cccceehhhhHHHhhhcccc
Confidence 35677999999999555 5699999999999999999999999987 69999999999999987775
No 14
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.09 E-value=1.3e-10 Score=88.52 Aligned_cols=50 Identities=42% Similarity=0.727 Sum_probs=47.6
Q ss_pred CCcEEEEeCCCCCCcC-CCCCCCcccceEeccCCCCcEEEEEeCCceEEEE
Q 006205 94 QGEVFSWGEESGGRLG-HGVDSDVLHPKLIDALSNMNIELVACGEYHTCAV 143 (657)
Q Consensus 94 ~G~Vy~wG~n~~GqLG-~g~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~aL 143 (657)
||+||+||.|.+|||| .+.......|++|+.+.+.+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 8888889999999999999999999999999987
No 15
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=99.05 E-value=7.5e-11 Score=129.16 Aligned_cols=74 Identities=20% Similarity=0.569 Sum_probs=54.7
Q ss_pred eeeccccccC-cccCCCCCCCCCccc----ccccccccccceeeccCCCccccccc-----cCCC-CCCCeeeCcchHHh
Q 006205 419 CLHKWVSGVD-QSMCSGCRLPFNNFK----RKRHNCYNCGLVFCHSCSSKKSLKAS-----MAPN-PNKPYRVCDNCFNK 487 (657)
Q Consensus 419 ~~~kwv~~~d-~~~C~~C~~~F~~f~----rkrh~C~~cG~~~C~~Cs~~~~~~~~-----~~~~-~~~~~RvC~~C~~~ 487 (657)
-...|+++++ ...|+.|+++|+.+. .+|||||+||.+||+.||+++...+. .+.. ...++||||.||++
T Consensus 449 hAPvWqpDDEaSdtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~yp~aKLpKPgsseE~ppRRVCD~CYdq 528 (1374)
T PTZ00303 449 HNPSWQKDDESSDSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAHYSFAKLAKPGSSDEAEERLVCDTCYKE 528 (1374)
T ss_pred cCCCCCCCcccCCcccCcCCcccccccccccccccccCCccccCccccCCcccCcccccCCCCCcccccccchhHHHHHH
Confidence 4567999887 478999999997442 46899999999999999999875321 1111 11366899999976
Q ss_pred hhccc
Q 006205 488 LRKTF 492 (657)
Q Consensus 488 ~~~~~ 492 (657)
+....
T Consensus 529 ~EnLl 533 (1374)
T PTZ00303 529 YETVS 533 (1374)
T ss_pred HHhHH
Confidence 65443
No 16
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=99.03 E-value=5.6e-11 Score=121.49 Aligned_cols=68 Identities=35% Similarity=0.868 Sum_probs=60.0
Q ss_pred eeeccccccCcccCCCCCC-CCCcccccccccccccceeeccCCCccccccccCCCCCCCeeeCcchHHhhhc
Q 006205 419 CLHKWVSGVDQSMCSGCRL-PFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRK 490 (657)
Q Consensus 419 ~~~kwv~~~d~~~C~~C~~-~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~~ 490 (657)
..+-|+++.+.+.|+.|.. .|+ +..+|||||+||.+||..|+.++..++.+. .++.|||+.||+.|.+
T Consensus 158 ~~~~W~PD~ea~~C~~C~~~~Ft-l~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~---~k~~rvC~~CF~el~~ 226 (288)
T KOG1729|consen 158 SAAVWLPDSEATECMVCGCTEFT-LSERRHHCRNCGDIVCAPCSRNRFLLPNLS---TKPIRVCDICFEELEK 226 (288)
T ss_pred cCCcccCcccceecccCCCcccc-HHHHHHHHHhcchHhhhhhhcCcccccccC---CCCceecHHHHHHHhc
Confidence 3556999999999999999 788 555679999999999999999997777655 5999999999999987
No 17
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=98.97 E-value=1.6e-10 Score=121.32 Aligned_cols=72 Identities=33% Similarity=0.816 Sum_probs=63.0
Q ss_pred CceeeeeeeccccccCcccCCCCCCCCCcccccccccccccceeeccCCCccccccccCCCCCCCeeeCc-----chHHh
Q 006205 413 NFTAAICLHKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCD-----NCFNK 487 (657)
Q Consensus 413 ~hT~al~~~kwv~~~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~-----~C~~~ 487 (657)
..++.|....|+++.+...|+.|.+||+ +.|+|||||+||.+||+.||...+++|..+. .|..|||. .||..
T Consensus 885 stsatlsppawipd~~a~~cmacq~pf~-afrrrhhcrncggifcg~cs~asapip~~gl--~ka~rvcrpqsnldc~~r 961 (990)
T KOG1819|consen 885 STSATLSPPAWIPDEDAEQCMACQMPFN-AFRRRHHCRNCGGIFCGKCSCASAPIPEHGL--DKAPRVCRPQSNLDCLTR 961 (990)
T ss_pred ccccccCCcccCCCCcchhhhhccCcHH-HHHHhhhhcccCceeecccccCCCCCccccc--ccCceecCCcccccceee
Confidence 3455567778999999999999999999 7777899999999999999999999998876 58999999 67654
No 18
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=98.87 E-value=2.6e-09 Score=71.63 Aligned_cols=30 Identities=40% Similarity=0.936 Sum_probs=26.1
Q ss_pred EEEEeeCCceEEEEecCCcEEEEecCCCCc
Q 006205 185 VSSISCGPWHTAVVTSAGQLFTFGDGTFGV 214 (657)
Q Consensus 185 I~~Ia~G~~hs~~Lt~~G~vy~wG~n~~Gq 214 (657)
|++|+||.+|+++|+++|+||+||+|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999997
No 19
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=98.84 E-value=4.9e-09 Score=70.25 Aligned_cols=30 Identities=43% Similarity=0.991 Sum_probs=26.0
Q ss_pred eEEEEecCCeEEEEEcCCcEEEEeCCCCCC
Q 006205 78 VQNIACGGRHAALVNKQGEVFSWGEESGGR 107 (657)
Q Consensus 78 I~~Ia~G~~h~~~lt~~G~Vy~wG~n~~Gq 107 (657)
|++|+||..|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999987
No 20
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=98.83 E-value=1.6e-09 Score=84.55 Aligned_cols=55 Identities=49% Similarity=1.088 Sum_probs=47.0
Q ss_pred cccCCCCCCCCCcccccccccccccceeeccCCCccccccccCCCCCCCeeeCcchHH
Q 006205 429 QSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFN 486 (657)
Q Consensus 429 ~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~ 486 (657)
...|+.|...|+. ..++|||+.||.+||.+|+..+..++.+ ...+|+|||+.||.
T Consensus 2 ~~~C~~C~~~F~~-~~rk~~Cr~Cg~~~C~~C~~~~~~~~~~--~~~~~~rvC~~C~~ 56 (57)
T cd00065 2 ASSCMGCGKPFTL-TRRRHHCRNCGRIFCSKCSSNRIPLPSM--GGGKPVRVCDSCYE 56 (57)
T ss_pred cCcCcccCccccC-CccccccCcCcCCcChHHcCCeeecCcc--cCCCccEeChHHhC
Confidence 4679999999995 5556999999999999999999887753 33689999999985
No 21
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=2e-10 Score=128.65 Aligned_cols=143 Identities=30% Similarity=0.525 Sum_probs=124.7
Q ss_pred CceEEEEeeCCceEEEEecCCcEEEEecCCCCccCCCCCcccccceeeeccCCCeEEEEEeCCCeeEEEEEeeecCCCcc
Q 006205 182 GIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSS 261 (657)
Q Consensus 182 ~~~I~~Ia~G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Ia~G~~hs~al~e~~~~~s~~~ 261 (657)
-.+|.+++||.+|+++++..|++|.||.|.+||+|++....-..|..++.+.+.+...|++|..|++++.- ....
T Consensus 13 ~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~-----~~~~ 87 (850)
T KOG0941|consen 13 YKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSS-----HTVL 87 (850)
T ss_pred hhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhh-----chhh
Confidence 34799999999999999999999999999999999985444444999999999999999999999999862 3344
Q ss_pred ccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeecCCCCeEEEEccCcEEEEEe-cCCcEEEEeCCCCC
Q 006205 262 NCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALT-TSGHVYTMGSPVYG 329 (657)
Q Consensus 262 ~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~~~~i~~I~~G~~~t~aLt-~~G~Vy~wG~n~~G 329 (657)
.+.++.++++|....+|+|+........|..+..+....+.+|+||..|+++.- .-|++|.+|.+..|
T Consensus 88 lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sG 156 (850)
T KOG0941|consen 88 LTDEGKVFSFGAGSTGQLGHSLTENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASG 156 (850)
T ss_pred cchhccccccCCcccccccccccccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCC
Confidence 456899999999999999998788888898888888899999999999988764 56899999988776
No 22
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=98.28 E-value=6.7e-08 Score=101.26 Aligned_cols=71 Identities=31% Similarity=0.776 Sum_probs=54.3
Q ss_pred ccccccCcccCCCCCCCCCcccccccccccccceeeccCCCccccc------------cccCC--------CCCCCeeeC
Q 006205 422 KWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLK------------ASMAP--------NPNKPYRVC 481 (657)
Q Consensus 422 kwv~~~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~------------~~~~~--------~~~~~~RvC 481 (657)
-|..+.+...|..|..+|+ ++|+|||||.||.++|.+|+..-..- -...| ....+.|+|
T Consensus 173 pW~DDs~V~~CP~Ca~~F~-l~rRrHHCRLCG~VmC~~C~k~iSle~a~~ltsss~~dt~~e~~qq~~~lH~~~~~iRlC 251 (505)
T KOG1842|consen 173 PWLDDSSVQFCPECANSFG-LTRRRHHCRLCGRVMCRDCSKFISLEIAIGLTSSSASDTHFEPNQQKDDLHQHPQPIRLC 251 (505)
T ss_pred cccCCCcccccccccchhh-hHHHhhhhhhcchHHHHHHHHhcChHHHHHHhhccCCCCCcCcccCcccccCChhHhHHH
Confidence 3999999999999999999 88889999999999999995433200 00011 123579999
Q ss_pred cchHHhhhcccc
Q 006205 482 DNCFNKLRKTFD 493 (657)
Q Consensus 482 ~~C~~~~~~~~~ 493 (657)
..|.+.|.....
T Consensus 252 ~hCl~~L~~R~~ 263 (505)
T KOG1842|consen 252 MHCLDNLFRRKL 263 (505)
T ss_pred HHHHHHHHHHHH
Confidence 999999877443
No 23
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.17 E-value=5.8e-07 Score=91.80 Aligned_cols=84 Identities=30% Similarity=0.639 Sum_probs=63.2
Q ss_pred EEEcCCCceeeeeeec----ccc-ccCcccCCCCCCCCC-cc---------cccccccccccceeeccCCCccccccccC
Q 006205 407 SIACGTNFTAAICLHK----WVS-GVDQSMCSGCRLPFN-NF---------KRKRHNCYNCGLVFCHSCSSKKSLKASMA 471 (657)
Q Consensus 407 ~Ia~G~~hT~al~~~k----wv~-~~d~~~C~~C~~~F~-~f---------~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~ 471 (657)
-++||..--+++-.-+ -.+ ..+...|+.|.++|. +| .-+.||||.||..+|..|+++....|.++
T Consensus 255 l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg 334 (404)
T KOG1409|consen 255 LISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMG 334 (404)
T ss_pred eeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcccccccc
Confidence 3677766666553211 111 135677999999986 22 12589999999999999999999999988
Q ss_pred CCCCCCeeeCcchHHhhhccc
Q 006205 472 PNPNKPYRVCDNCFNKLRKTF 492 (657)
Q Consensus 472 ~~~~~~~RvC~~C~~~~~~~~ 492 (657)
+ +..+|+|+.||..++-..
T Consensus 335 ~--e~~vR~~~~c~~~i~~~~ 353 (404)
T KOG1409|consen 335 F--EFSVRVCDSCYPTIKDEE 353 (404)
T ss_pred c--eeEEEEecccchhhhcCC
Confidence 7 688999999999997644
No 24
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]
Probab=98.06 E-value=9.7e-07 Score=101.72 Aligned_cols=62 Identities=27% Similarity=0.573 Sum_probs=53.1
Q ss_pred eeeccccccCcccCCCCCCCCCcccccccccccccceeeccCCCccccccccCCCCCCCeeeCcch
Q 006205 419 CLHKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNC 484 (657)
Q Consensus 419 ~~~kwv~~~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C 484 (657)
....|+++.+...|+.|.+.|. +..+|||||+||+++|..|++.+..+-.+.+ +.-|||..|
T Consensus 547 kqP~wvpdse~pncm~clqkft-~ikrrhhcRacgkVlcgvccnek~~leyl~e---~~~rv~nV~ 608 (1287)
T KOG1841|consen 547 KQPSWVPDSEAPNCMDCLQKFT-PIKRRHHCRACGKVLCGVCCNEKSALEYLSE---SEGRVSNVD 608 (1287)
T ss_pred CCCccCccccCchHHHHHhhcc-cccccccchhccceeehhhcchhhhhhhcCc---ccccccccc
Confidence 4566999999999999999999 7777899999999999999999987776653 556777766
No 25
>KOG1843 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=8.6e-06 Score=84.94 Aligned_cols=68 Identities=16% Similarity=0.183 Sum_probs=59.1
Q ss_pred eeccccccCcccCCCCCCCCCcccccccccccccceeeccCCCccccccccCCCCCCCeeeCcchHHhh
Q 006205 420 LHKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKL 488 (657)
Q Consensus 420 ~~kwv~~~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~ 488 (657)
...|.++.--..|++|..+|+-+.-+|||||.|+..||.+|+--+.++|.. +-...++|||+.|+..|
T Consensus 151 ap~f~yskskglfagvSvegsaI~erR~anR~~yg~~cra~~ilsg~vp~p-~a~d~l~RVldS~~~nl 218 (473)
T KOG1843|consen 151 APVFLYSKSKGLFAGVSVEGSAIIERREANRKFYGIFCRAKSILSGLVPVP-FAADPLQRVLDSCAFNL 218 (473)
T ss_pred CccccccccccceeeeecccceeeecchhhhhhcCccchhhhhhccCCCCC-cccCCHHHHHhhHhhcc
Confidence 456888888899999999999888888999999999999999888777643 34468999999999999
No 26
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=96.60 E-value=0.0006 Score=74.62 Aligned_cols=68 Identities=22% Similarity=0.449 Sum_probs=58.1
Q ss_pred ccCcccCCCCCCCCCcccccccccccccceeeccCCCccccccccCCCCCCCeeeCcchHHhhhccccCCC
Q 006205 426 GVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTFDTDG 496 (657)
Q Consensus 426 ~~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~~~~~~~~ 496 (657)
......|..|+.+|+..+++||||..||.++|..|+..+..+.. +..+.-|||..||.....+..+.+
T Consensus 412 ~~k~~~c~~c~e~~~s~t~~R~~~k~~~~vlc~~cs~~~~~l~~---~~s~ssrv~~~~~~~~~~a~~s~~ 479 (623)
T KOG4424|consen 412 DNKVTSCDSCEETFNSITFRRHRCKAKGAVLCDKCSDFMAKLSY---DNSRSSRVCMDRYLTPSGAPGSPP 479 (623)
T ss_pred ccccccchhhcCchhhHHHhhhhhhhccceeeccccchhhhhcc---cccchhhhhhhhccCCCCCCCCch
Confidence 67788999999999999999999999999999999999865553 447889999999998876665443
No 27
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=94.87 E-value=0.55 Score=58.17 Aligned_cols=101 Identities=17% Similarity=0.108 Sum_probs=60.3
Q ss_pred cCcEEEEEecCCcEEEEeCCCCCCCCCCCCCCCcceeeccccCCCCEEEEEEccccc-cccccCCeEEEEecCCCCCCCC
Q 006205 307 GHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSYHV-AVLTSKTEVYTWGKGANGRLGH 385 (657)
Q Consensus 307 G~~~t~aLt~~G~Vy~wG~n~~GqLG~~~~~~~~p~~v~~~l~~~~V~~Ia~G~~ht-~aLt~~G~vy~WG~n~~GqLG~ 385 (657)
+.++.++|++.|++-..= ..-.|..+...-....|+.|++-..|. +|+|.+|++|.-=+-..-..-.
T Consensus 712 ~~~~fvald~qg~lt~h~------------k~g~p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~~~k~~WQ~~~~ 779 (1774)
T PF11725_consen 712 NDNKFVALDDQGDLTAHQ------------KPGRPVPLSRPGLSGEIKDLALDEKQNLYALTSTGELFRLPKEAWQGNAE 779 (1774)
T ss_pred cCCceEEeccCCcccccc------------CCCCCccCCCCCCCcchhheeeccccceeEecCCCceeecCHHHhhCccc
Confidence 455566666666554321 011144333322245699999998864 7899999999843322211111
Q ss_pred CCCCCCcccEEecccCCCcEEEEEcCCCceeeeee
Q 006205 386 GDTDDRNSPSLVEALKDKQVKSIACGTNFTAAICL 420 (657)
Q Consensus 386 g~~~~~~~P~~V~~l~~~~v~~Ia~G~~hT~al~~ 420 (657)
+ .......++|..+.+..|..+....+|.+.+..
T Consensus 780 ~-~~~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~ 813 (1774)
T PF11725_consen 780 G-DQMAAKWQKVALPDEQPVKSLRTNDDNHLSAQI 813 (1774)
T ss_pred C-CccccCceeccCCCCCchhhhhcCCCCceEEEe
Confidence 1 112356667766677788888888888888864
No 28
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=94.76 E-value=0.0027 Score=69.61 Aligned_cols=65 Identities=32% Similarity=0.826 Sum_probs=49.5
Q ss_pred eecccccc----CcccCCC-CCCCCCcccccccccccccceeeccCCCccccccccCCCCCCCeeeCcchHHh
Q 006205 420 LHKWVSGV----DQSMCSG-CRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNK 487 (657)
Q Consensus 420 ~~kwv~~~----d~~~C~~-C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~ 487 (657)
.|.|+++. .-..|+- |+.-|..|.|| |||+.||...|.+|+.++...-- -..+.|.|+||.|+.+
T Consensus 313 l~nfq~darrafs~a~~~a~~R~~~kd~~Rk-~~~~g~Ga~e~aa~ea~kgiqEd--~gse~~Adg~Dq~psv 382 (1141)
T KOG1811|consen 313 LHNFQPDARRAFSEAICMACCREHFKDFNRK-HHCRGCGALECAACEAKKGIQED--CGSENPADGCDQCPSV 382 (1141)
T ss_pred hhhcChhhhhhhhhhHHHHHHHHHHHHHHHh-hhccccchHHHhHHHHhhhhhhc--ccccCcccccccccch
Confidence 47788886 4456765 56668766665 99999999999999999865542 2336899999999954
No 29
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=93.77 E-value=0.056 Score=65.71 Aligned_cols=51 Identities=31% Similarity=0.850 Sum_probs=38.6
Q ss_pred cccCCCCCCCCCcccccccccccccceeeccCCCccccccccCCCCCCCeeeCcchHHhhhcccc
Q 006205 429 QSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTFD 493 (657)
Q Consensus 429 ~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~~~~~ 493 (657)
..+|..|...+ .++|||+.||++||..|. +..++..|||..|+....+..-
T Consensus 5 ~~~~~~~~t~~----~~~~~~~~~g~~~~~~~~----------~~~~~~i~~~~~~~~~~~~~~~ 55 (1598)
T KOG0230|consen 5 SNVCYDCDTSV----NRRHHCRVCGRVFCSKCQ----------DSPETSIRVCNECRGQWEQGNV 55 (1598)
T ss_pred ccchhcccccc----ccCCCCcccCceeccccC----------CCCccceeehhhhhhhccccCC
Confidence 34677777443 367999999999999999 2224589999999998766543
No 30
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=92.43 E-value=0.095 Score=47.19 Aligned_cols=52 Identities=21% Similarity=0.639 Sum_probs=41.0
Q ss_pred CcccCCCCCCCCCcccccccccccccceeeccCCCccccccccCCCCCCCeeeCcchHHhh
Q 006205 428 DQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKL 488 (657)
Q Consensus 428 d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~ 488 (657)
+...|..|..+|+.+....+-|..|...+|..|... ....+.-+|..|+...
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~---------~~~~~~WlC~vC~k~r 104 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY---------SKKEPIWLCKVCQKQR 104 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE---------TSSSCCEEEHHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc---------CCCCCCEEChhhHHHH
Confidence 456899999999966666699999999999999877 1246788999998764
No 31
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=91.33 E-value=0.028 Score=65.89 Aligned_cols=133 Identities=17% Similarity=0.257 Sum_probs=88.9
Q ss_pred CCCeEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCC--CCCCcccceEe-ccCCCCcEEEEEeCCceEEEEEcCCcEEE
Q 006205 75 VLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHG--VDSDVLHPKLI-DALSNMNIELVACGEYHTCAVTLSGDLYT 151 (657)
Q Consensus 75 ~~~I~~Ia~G~~h~~~lt~~G~Vy~wG~n~~GqLG~g--~~~~~~~P~~v-~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~ 151 (657)
..+++.|.+-.+..++|.+.|++|.|-....--|-.. .......|..- -.+.+.+|+.+++..-..-++|++|+|.+
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlas 452 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLAS 452 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhh
Confidence 3457777777888899999999999987554333221 12223333322 24567899999999999999999999999
Q ss_pred EcCCCCCCCccCCCCCcceeeeeeecCCCCCceEEEEeeCCceEEEEecCCcEEEEecCCCC
Q 006205 152 WGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFG 213 (657)
Q Consensus 152 wG~n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~G~~hs~~Lt~~G~vy~wG~n~~G 213 (657)
|=+- ..-|......+..-+++. .+++.+++..|...|.++..++.-+|-||---+-
T Consensus 453 WlDE----cgagV~fkLa~ea~Tkie--ed~~maVqd~~~adhlaAf~~dniihWcGiVPf~ 508 (3015)
T KOG0943|consen 453 WLDE----CGAGVAFKLAHEAQTKIE--EDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFS 508 (3015)
T ss_pred HHhh----hhhhhhhhhhhhhhhhhh--hhhHHHHHHHHHHHHHHHHhhhceeeEEeeeeeh
Confidence 9543 111111111111122222 4567788888999999999999999999954443
No 32
>PLN02153 epithiospecifier protein
Probab=86.25 E-value=50 Score=35.16 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=11.6
Q ss_pred cccccccCCeEEEEec
Q 006205 362 HVAVLTSKTEVYTWGK 377 (657)
Q Consensus 362 ht~aLt~~G~vy~WG~ 377 (657)
+++.+..+++||.||-
T Consensus 307 ~~~~v~~~~~~~~~gG 322 (341)
T PLN02153 307 TTATVYGKNGLLMHGG 322 (341)
T ss_pred cccccCCcceEEEEcC
Confidence 3555666779999984
No 33
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=85.44 E-value=1.8 Score=53.92 Aligned_cols=116 Identities=14% Similarity=0.123 Sum_probs=65.8
Q ss_pred eeeccCCCeEEEEE-eCCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEe--ecCCCCeEEE
Q 006205 228 EVESLKGLRTVRAA-CGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVA--ALVEPNFCRV 304 (657)
Q Consensus 228 ~v~~l~~~~I~~Ia-~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~--~l~~~~i~~I 304 (657)
.++.+.+..|..++ .+.++.++|++ .|+|-..= +... |..+. .+ .-.|+.|
T Consensus 696 ~l~Gl~~~~i~a~Avv~~~~fvald~------------qg~lt~h~-----------k~g~--p~~l~~~gl-~G~ik~l 749 (1774)
T PF11725_consen 696 ALEGLEDRVITAFAVVNDNKFVALDD------------QGDLTAHQ-----------KPGR--PVPLSRPGL-SGEIKDL 749 (1774)
T ss_pred cccCCCcCcceeEEEEcCCceEEecc------------CCcccccc-----------CCCC--CccCCCCCC-Ccchhhe
Confidence 45556655566555 46677777763 56554431 1111 33333 22 3488999
Q ss_pred EccCcEE-EEEecCCcEEEEeCCCCCCCCCCCCCCCcceeeccccCCCCEEEEEEccccccccccCC
Q 006205 305 ACGHSLT-VALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKT 370 (657)
Q Consensus 305 ~~G~~~t-~aLt~~G~Vy~wG~n~~GqLG~~~~~~~~p~~v~~~l~~~~V~~Ia~G~~ht~aLt~~G 370 (657)
++-..|. +|||.+|++|..=.-..-..-.+.......+.+..+ .+..|..+....+|.+.+.-++
T Consensus 750 ~lD~~~nL~Alt~~G~Lf~~~k~~WQ~~~~~~~~~~~W~~v~lP-~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 750 ALDEKQNLYALTSTGELFRLPKEAWQGNAEGDQMAAKWQKVALP-DEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred eeccccceeEecCCCceeecCHHHhhCcccCCccccCceeccCC-CCCchhhhhcCCCCceEEEecC
Confidence 9988865 689999999984322211111111111233444432 5667899999998888776443
No 34
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=84.80 E-value=7.5 Score=43.53 Aligned_cols=70 Identities=19% Similarity=0.236 Sum_probs=50.1
Q ss_pred cEEEEEeCC-ceEEEEEcCCcEE-EEcCCCCCCCccCCCCCcceeeeeeecCCCCCceEEEEeeCCceEEEEecCCcEEE
Q 006205 129 NIELVACGE-YHTCAVTLSGDLY-TWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFT 206 (657)
Q Consensus 129 ~I~~Va~G~-~hs~aLt~dG~Vy-~wG~n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~G~~hs~~Lt~~G~vy~ 206 (657)
.+.+|++|. ....+|+.+|.|| --|-. .+.+.|..-. .|..|.....++.|+.|....-+||.+|.||.
T Consensus 228 ~L~qISagPtg~VwAvt~nG~vf~R~GVs--RqNp~GdsWk-------dI~tP~~a~~~v~iSvGt~t~Waldndg~lwf 298 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTENGAVFYREGVS--RQNPEGDSWK-------DIVTPRQALEPVCISVGTQTLWALDNDGNLWF 298 (705)
T ss_pred ccceEeecCcceEEEEeeCCcEEEEeccc--ccCCCCchhh-------hccCcccccceEEEEeccceEEEEecCCcEEE
Confidence 588999999 7788999999985 45555 3344444322 22222223349999999999999999999985
Q ss_pred E
Q 006205 207 F 207 (657)
Q Consensus 207 w 207 (657)
=
T Consensus 299 r 299 (705)
T KOG3669|consen 299 R 299 (705)
T ss_pred E
Confidence 4
No 35
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=84.24 E-value=48 Score=34.01 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=16.2
Q ss_pred CceEEEEEcCCcEEEEcCCCCCCCcc
Q 006205 137 EYHTCAVTLSGDLYTWGDGTYNFGLL 162 (657)
Q Consensus 137 ~~hs~aLt~dG~Vy~wG~n~~~~GqL 162 (657)
..|++++- ++++|.||-.....|.+
T Consensus 80 YGHtvV~y-~d~~yvWGGRND~egaC 104 (392)
T KOG4693|consen 80 YGHTVVEY-QDKAYVWGGRNDDEGAC 104 (392)
T ss_pred cCceEEEE-cceEEEEcCccCccccc
Confidence 45776655 67899999653334544
No 36
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=82.60 E-value=1.3 Score=32.61 Aligned_cols=26 Identities=42% Similarity=0.424 Sum_probs=22.9
Q ss_pred cchhhhhhhhHHHHHHHHHHHhhhhc
Q 006205 631 VVDDAKRTNDSLSQEVIKLRAQVFAF 656 (657)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (657)
--|.|+.-++.|.+|..+|++||..|
T Consensus 13 ~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 13 SYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999999865
No 37
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=81.90 E-value=0.17 Score=59.76 Aligned_cols=128 Identities=20% Similarity=0.212 Sum_probs=82.9
Q ss_pred CCcEEEEEeCCceEEEEEcCCcEEEEcCCCCCCCccCCC--CCcceeeeeeecCCCCCceEEEEeeCCceEEEEecCCcE
Q 006205 127 NMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHG--NEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQL 204 (657)
Q Consensus 127 ~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~~--~~~~~~~P~~v~~~l~~~~I~~Ia~G~~hs~~Lt~~G~v 204 (657)
..+++.|.+-.+..++|..+|++|.|-+... .| +-.. ...+..-|..-..-+.+.+|+.+++..--.-++|++|+|
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdES-Eg-lddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghl 450 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDES-EG-LDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHL 450 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccc-cC-CCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCch
Confidence 4578888888899999999999999987742 22 2111 111122333333336788999999999999999999999
Q ss_pred EEEecCCCCccCCCCCcccc--cceeeeccCCCeEEEEEeCCCeeEEEEEeeecCCCccccCCCcEEEEcC
Q 006205 205 FTFGDGTFGVLGHGDRKSVS--IPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGD 273 (657)
Q Consensus 205 y~wG~n~~GqLG~g~~~~~~--~P~~v~~l~~~~I~~Ia~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~ 273 (657)
.+|=+- +|.+-..... .-+.+ .+.+..+++..|-..|.++..+ +.-+|-||-
T Consensus 451 asWlDE----cgagV~fkLa~ea~Tki-eed~~maVqd~~~adhlaAf~~------------dniihWcGi 504 (3015)
T KOG0943|consen 451 ASWLDE----CGAGVAFKLAHEAQTKI-EEDGEMAVQDHCCADHLAAFLE------------DNIIHWCGI 504 (3015)
T ss_pred hhHHhh----hhhhhhhhhhhhhhhhh-hhhhHHHHHHHHHHHHHHHHhh------------hceeeEEee
Confidence 999432 2222111110 11111 2334556666777788887763 888999993
No 38
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=78.22 E-value=1.7 Score=53.52 Aligned_cols=57 Identities=30% Similarity=0.684 Sum_probs=38.1
Q ss_pred cccCcccCCCCCCCCCcccccccccccccceeeccCCCccccccccCCCCCCCeeeCcchHHhhhcccc
Q 006205 425 SGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTFD 493 (657)
Q Consensus 425 ~~~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~~~~~ 493 (657)
++.-.-.|..|++.|..|.|+ ||| ||.+||.+| .......- .... +.|.........
T Consensus 93 ~d~s~~ec~~~~~~~~t~Rr~-~~~--~gqi~~ss~----~~~~~~~~--~~e~---d~c~~~~~~~~~ 149 (1598)
T KOG0230|consen 93 PDSSSKECYDCEQKFETFRRK-HHC--CGQIFCSSC----IDGMSIRC--DGEL---DYCSRYVEDFAK 149 (1598)
T ss_pred Cccccchhhhhccchhhhhcc-ccc--CccccCCcc----cCCccccc--cccc---chhHHHhhhhhc
Confidence 444556799999999966655 999 999999999 22222111 1222 888887765554
No 39
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=78.13 E-value=84 Score=32.04 Aligned_cols=63 Identities=11% Similarity=0.171 Sum_probs=39.0
Q ss_pred EEccCcEEEEEecCCcEEEEeCCCCCCCCCCCCCCCcceeeccccCCCCEEEEEEccccc--cccccCCeEEEEec
Q 006205 304 VACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSYHV--AVLTSKTEVYTWGK 377 (657)
Q Consensus 304 I~~G~~~t~aLt~~G~Vy~wG~n~~GqLG~~~~~~~~p~~v~~~l~~~~V~~Ia~G~~ht--~aLt~~G~vy~WG~ 377 (657)
+.--..+-+.=+.+|+|++|--..+-. .....|. ....|.+++.....+ ++.++.|..|+|-.
T Consensus 132 lhpnQteLis~dqsg~irvWDl~~~~c-----~~~liPe------~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 132 LHPNQTELISGDQSGNIRVWDLGENSC-----THELIPE------DDTSIQSLTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred ecCCcceEEeecCCCcEEEEEccCCcc-----ccccCCC------CCcceeeEEEcCCCcEEEEecCCccEEEEEc
Confidence 344455667778999999996322100 1111221 225577887776654 66788999999964
No 40
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=77.27 E-value=29 Score=35.83 Aligned_cols=139 Identities=21% Similarity=0.196 Sum_probs=79.1
Q ss_pred CCCc--cccCCCCcEEEEcCCCCCCccCCCCCCCccccccccccCCceeecccCCCCeEEEEec---CCeEEEEEcCCcE
Q 006205 23 GSGH--DDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACG---GRHAALVNKQGEV 97 (657)
Q Consensus 23 G~~~--~~l~~~G~Vy~WG~n~~~G~LG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~I~~Ia~G---~~h~~~lt~~G~V 97 (657)
|++. .+-+.||.||.=+... +.+|+=+-. .-.++.+..| .-|.+++..||..
T Consensus 61 G~ap~dvapapdG~VWft~qg~--gaiGhLdP~---------------------tGev~~ypLg~Ga~Phgiv~gpdg~~ 117 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGT--GAIGHLDPA---------------------TGEVETYPLGSGASPHGIVVGPDGSA 117 (353)
T ss_pred CCCccccccCCCCceEEecCcc--ccceecCCC---------------------CCceEEEecCCCCCCceEEECCCCCe
Confidence 6644 5678999999877766 667754411 1134444444 3478888888888
Q ss_pred EEEeCC-CCCCcCCCCCCCcccceEeccCCCCcEEEEEeCCceEEEEEcCCcEEEEcCCCCCCCccCCCCCcceeeeeee
Q 006205 98 FSWGEE-SGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRV 176 (657)
Q Consensus 98 y~wG~n-~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~~~~~~~~~P~~v 176 (657)
|.+-.. .-++++.........|.+ .+.+-++-.+.+++..|.||.-|.+-+ +|.|.-........|..
T Consensus 118 Witd~~~aI~R~dpkt~evt~f~lp---------~~~a~~nlet~vfD~~G~lWFt~q~G~-yGrLdPa~~~i~vfpaP- 186 (353)
T COG4257 118 WITDTGLAIGRLDPKTLEVTRFPLP---------LEHADANLETAVFDPWGNLWFTGQIGA-YGRLDPARNVISVFPAP- 186 (353)
T ss_pred eEecCcceeEEecCcccceEEeecc---------cccCCCcccceeeCCCccEEEeecccc-ceecCcccCceeeeccC-
Confidence 887543 333333222111111111 233445567889999999999988732 34333222222222221
Q ss_pred cCCCCCceEEEEeeCCceEEEEecCCcEEEE
Q 006205 177 NGPLEGIHVSSISCGPWHTAVVTSAGQLFTF 207 (657)
Q Consensus 177 ~~~l~~~~I~~Ia~G~~hs~~Lt~~G~vy~w 207 (657)
. -+.-.-++.|-+|+||.-
T Consensus 187 q------------G~gpyGi~atpdGsvwya 205 (353)
T COG4257 187 Q------------GGGPYGICATPDGSVWYA 205 (353)
T ss_pred C------------CCCCcceEECCCCcEEEE
Confidence 1 133456788999999965
No 41
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=76.49 E-value=76 Score=35.97 Aligned_cols=107 Identities=18% Similarity=0.168 Sum_probs=64.2
Q ss_pred eCCceEEEEecCCcEEEEecCCCCccCCCCCcccccceeeeccC-CCeEEEEEeCC-CeeEEEEEeeecCCCccccCCCc
Q 006205 190 CGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLK-GLRTVRAACGV-WHTAAVVEVMVGNSSSSNCSSGK 267 (657)
Q Consensus 190 ~G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~-~~~I~~Ia~G~-~hs~al~e~~~~~s~~~~~~~G~ 267 (657)
.|.....+|..+|.+|-= -|.....+ .-...+... ...+..|++|. .-..+|++ +|.
T Consensus 190 ~g~~~awAI~s~Gd~y~R-------tGvs~~~P--~GraW~~i~~~t~L~qISagPtg~VwAvt~------------nG~ 248 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLR-------TGVSVDRP--CGRAWKVICPYTDLSQISAGPTGVVWAVTE------------NGA 248 (705)
T ss_pred CCceEEEEEecCCcEEEe-------ccccCCCC--CCceeeecCCCCccceEeecCcceEEEEee------------CCc
Confidence 455666778888888732 12111111 111111111 12478899998 55667774 776
Q ss_pred E-EEEcCCCCCCCCCCCCCceeecEEEeecCCCCeEEEEccCcEEEEEecCCcEEEE
Q 006205 268 L-FTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVYTM 323 (657)
Q Consensus 268 l-y~wG~n~~gqLG~g~~~~~~~P~~v~~l~~~~i~~I~~G~~~t~aLt~~G~Vy~w 323 (657)
| |-.|-....+.|..-+ +...|... ..++.|+.|....-+||++|.+|.-
T Consensus 249 vf~R~GVsRqNp~GdsWk-dI~tP~~a-----~~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 249 VFYREGVSRQNPEGDSWK-DIVTPRQA-----LEPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred EEEEecccccCCCCchhh-hccCcccc-----cceEEEEeccceEEEEecCCcEEEE
Confidence 5 4567766666665443 33333322 2389999998888999999999863
No 42
>PHA03098 kelch-like protein; Provisional
Probab=75.16 E-value=1.2e+02 Score=34.43 Aligned_cols=17 Identities=12% Similarity=0.218 Sum_probs=11.7
Q ss_pred ceEEEEEcCCcEEEEcCC
Q 006205 138 YHTCAVTLSGDLYTWGDG 155 (657)
Q Consensus 138 ~hs~aLt~dG~Vy~wG~n 155 (657)
.|+++ .-+|+||.+|-.
T Consensus 335 ~~~~~-~~~~~lyv~GG~ 351 (534)
T PHA03098 335 NPGVT-VFNNRIYVIGGI 351 (534)
T ss_pred cceEE-EECCEEEEEeCC
Confidence 34444 447899999865
No 43
>PHA03098 kelch-like protein; Provisional
Probab=74.74 E-value=1.6e+02 Score=33.52 Aligned_cols=16 Identities=13% Similarity=0.254 Sum_probs=11.1
Q ss_pred ceEEEEecCCcEEEEec
Q 006205 193 WHTAVVTSAGQLFTFGD 209 (657)
Q Consensus 193 ~hs~~Lt~~G~vy~wG~ 209 (657)
.|+++. -+|+||.+|-
T Consensus 335 ~~~~~~-~~~~lyv~GG 350 (534)
T PHA03098 335 NPGVTV-FNNRIYVIGG 350 (534)
T ss_pred cceEEE-ECCEEEEEeC
Confidence 355444 4789999994
No 44
>PHA02713 hypothetical protein; Provisional
Probab=74.42 E-value=70 Score=36.83 Aligned_cols=20 Identities=10% Similarity=0.272 Sum_probs=13.8
Q ss_pred CCceEEEEEcCCcEEEEcCC
Q 006205 136 GEYHTCAVTLSGDLYTWGDG 155 (657)
Q Consensus 136 G~~hs~aLt~dG~Vy~wG~n 155 (657)
...+..+..-+|+||++|-.
T Consensus 341 ~R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 341 NRCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred hhhceeEEEECCEEEEECCc
Confidence 34444555668999999965
No 45
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=69.64 E-value=17 Score=36.36 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=24.6
Q ss_pred CcEEEEEeCCceEEEEEcCCcEEEEcCC
Q 006205 128 MNIELVACGEYHTCAVTLSGDLYTWGDG 155 (657)
Q Consensus 128 ~~I~~Va~G~~hs~aLt~dG~Vy~wG~n 155 (657)
.++..+.|-..+.++||.+|.+|+|--.
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~ 40 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLK 40 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 4788899999999999999999999544
No 46
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.41 E-value=1.3e+02 Score=37.53 Aligned_cols=218 Identities=16% Similarity=0.140 Sum_probs=110.1
Q ss_pred EEEEEcCCcEEEEeCCCCCCcCCCCCC--CcccceEeccCCCCcEEEEEeCCceEEEEEcCCcEEEEcCCCCCCCccCCC
Q 006205 88 AALVNKQGEVFSWGEESGGRLGHGVDS--DVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHG 165 (657)
Q Consensus 88 ~~~lt~~G~Vy~wG~n~~GqLG~g~~~--~~~~P~~v~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~~ 165 (657)
-+-+|-|.++|.|-.|+.+++-.-+.. .+..-.+++.-++.-+-.| .|.++|.+-=+|+..|-.. .....+..
T Consensus 92 RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~~ei~ilgV~~-~~~~~~~~ 166 (1311)
T KOG1900|consen 92 RAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATPVEIVILGVSF-DEFTGELS 166 (1311)
T ss_pred ceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh----heeEEecccceEEEEEEEe-ccccCccc
Confidence 467899999999999987776432221 1112222222222222222 5889999999999888542 12222222
Q ss_pred CCcceeeeeeecCCCCCceEEEEeeCCceEEEEe-cCCcEEEE----ecCCCCc-cCCC----CCcccccceeee--ccC
Q 006205 166 NEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVT-SAGQLFTF----GDGTFGV-LGHG----DRKSVSIPREVE--SLK 233 (657)
Q Consensus 166 ~~~~~~~P~~v~~~l~~~~I~~Ia~G~~hs~~Lt-~~G~vy~w----G~n~~Gq-LG~g----~~~~~~~P~~v~--~l~ 233 (657)
..... +..+.++..|..|.+-.+-=++++ .+|.||-. +++-|++ +-.- ..-....|..+. ...
T Consensus 167 ~f~~~-----~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~ 241 (1311)
T KOG1900|consen 167 IFNTS-----FKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSS 241 (1311)
T ss_pred ccccc-----eeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCC
Confidence 22211 222345666777775555445554 66665543 2333443 1110 111223444222 122
Q ss_pred CCeEEEEEeCCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCC---------ceeecEEEeecCCCCeEEE
Q 006205 234 GLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKE---------AKLVPTCVAALVEPNFCRV 304 (657)
Q Consensus 234 ~~~I~~Ia~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~---------~~~~P~~v~~l~~~~i~~I 304 (657)
...|.+|+-+....+..+- ...|.+-+|--...|+-+.-... ....-..+....-..|++|
T Consensus 242 ~dpI~qi~ID~SR~IlY~l----------sek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s~f~~IvsI 311 (1311)
T KOG1900|consen 242 KDPIRQITIDNSRNILYVL----------SEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDSVFFSIVSI 311 (1311)
T ss_pred CCcceeeEeccccceeeee----------ccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCcccceeEEe
Confidence 4579999998888777652 14676666655444443321100 0000001111111345555
Q ss_pred E------ccCcEEEEEecCC-cEEEEeC
Q 006205 305 A------CGHSLTVALTTSG-HVYTMGS 325 (657)
Q Consensus 305 ~------~G~~~t~aLt~~G-~Vy~wG~ 325 (657)
. .-+-|.+|+|..| ++|.-|+
T Consensus 312 ~~l~~~es~~l~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 312 SPLSASESNDLHLVAITSTGVRLYFSTS 339 (1311)
T ss_pred cccCcccccceeEEEEecCCeEEEEecc
Confidence 3 3455899999999 5776554
No 47
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=69.38 E-value=1.5 Score=45.59 Aligned_cols=65 Identities=23% Similarity=0.521 Sum_probs=51.0
Q ss_pred ccccccCcccCCCCCCCCCcccccccccccccceeeccCCC----ccccccccCCCCCCCeeeCcchHHh
Q 006205 422 KWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSS----KKSLKASMAPNPNKPYRVCDNCFNK 487 (657)
Q Consensus 422 kwv~~~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~----~~~~~~~~~~~~~~~~RvC~~C~~~ 487 (657)
.|..+.+...|..|...|. |.+++|+|+.||+++|..|.. ++.+.+.+-.-.+...+.|..|+..
T Consensus 13 ~~~~~~e~~s~~~~~~e~~-~~~r~~~~~~~grv~~~q~~~~k~~rk~~q~r~~~l~~D~~~~~~~~~~~ 81 (288)
T KOG1729|consen 13 DWQANSEANSCRNCKVEFC-FGRRGHPCRECGRVLCRQGTLVKRCRKKLQSRSFFLFNDILVYGNIVSDN 81 (288)
T ss_pred HHHHhccchhhhhhcccch-hhhccCcccccchhhhhhhhhHHHHhcccccccccccccchhhcccccCH
Confidence 4777788888999999998 777789999999999999977 3334444444446788999999887
No 48
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.60 E-value=0.24 Score=52.36 Aligned_cols=63 Identities=25% Similarity=0.589 Sum_probs=51.1
Q ss_pred cccccCcccCCCCCCCCCccccccccccc--ccceeeccCCCccccccccCCCCCCCeeeCcchHHhhhc
Q 006205 423 WVSGVDQSMCSGCRLPFNNFKRKRHNCYN--CGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRK 490 (657)
Q Consensus 423 wv~~~d~~~C~~C~~~F~~f~rkrh~C~~--cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~~ 490 (657)
|..+.+...|..|...|...+. +.+|.. |+.+||..|+. +.+|.+.+ ..|..||+-|++.+..
T Consensus 462 ~ql~~~ve~c~~~~aS~~slk~-e~erl~qq~eqi~~~~~~K--atvp~l~~--e~~akv~rlq~eL~~s 526 (542)
T KOG0993|consen 462 WQLDDDVEQCSNCDASFASLKV-EPERLHQQCEQIFCMNCLK--ATVPSLPN--ERPAKVCRLQHELLNS 526 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHhHHH--hhcccccc--cchHHHHHHHHHHhhh
Confidence 8888999999999999985444 467776 99999999985 45566554 6889999999998754
No 49
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=68.47 E-value=1.9e+02 Score=31.89 Aligned_cols=67 Identities=24% Similarity=0.350 Sum_probs=33.7
Q ss_pred cEEEEEeCC--ceEEEEEcCCcEEEEcCCCCCCCccCCCCCcceeeeeeecCCCCCceEEEEeeCCceEEEEecCCcEEE
Q 006205 129 NIELVACGE--YHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFT 206 (657)
Q Consensus 129 ~I~~Va~G~--~hs~aLt~dG~Vy~wG~n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~G~~hs~~Lt~~G~vy~ 206 (657)
.|..+++.. ++.++=|..|++|.|--+. |.|=.-- ..+ .......+++--..|.+--..||.|+.
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelss---G~LL~v~-~aH---------YQ~ITcL~fs~dgs~iiTgskDg~V~v 149 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSS---GILLNVL-SAH---------YQSITCLKFSDDGSHIITGSKDGAVLV 149 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEecc---ccHHHHH-Hhh---------ccceeEEEEeCCCcEEEecCCCccEEE
Confidence 344554433 2334445799999997652 3221100 011 122223333334445555567899999
Q ss_pred Ee
Q 006205 207 FG 208 (657)
Q Consensus 207 wG 208 (657)
|=
T Consensus 150 W~ 151 (476)
T KOG0646|consen 150 WL 151 (476)
T ss_pred EE
Confidence 95
No 50
>PLN02153 epithiospecifier protein
Probab=65.81 E-value=1.9e+02 Score=30.74 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=12.2
Q ss_pred ceEEEEEcCCcEEEEcCC
Q 006205 138 YHTCAVTLSGDLYTWGDG 155 (657)
Q Consensus 138 ~hs~aLt~dG~Vy~wG~n 155 (657)
.|++++ .+++||.+|-.
T Consensus 130 ~~~~~~-~~~~iyv~GG~ 146 (341)
T PLN02153 130 FHSMAS-DENHVYVFGGV 146 (341)
T ss_pred eeEEEE-ECCEEEEECCc
Confidence 566554 57899999864
No 51
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=64.09 E-value=96 Score=36.97 Aligned_cols=70 Identities=20% Similarity=0.240 Sum_probs=40.2
Q ss_pred CceEEEEEcCCc-EEEEcCCCCCCCccCCCCCc-ceeeeeeecCCCCCceEEEEeeCCceEEEEecCCc--EEEEecCCC
Q 006205 137 EYHTCAVTLSGD-LYTWGDGTYNFGLLGHGNEV-SHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQ--LFTFGDGTF 212 (657)
Q Consensus 137 ~~hs~aLt~dG~-Vy~wG~n~~~~GqLG~~~~~-~~~~P~~v~~~l~~~~I~~Ia~G~~hs~~Lt~~G~--vy~wG~n~~ 212 (657)
....++++.+|+ |+++|.+ |..-.-... ....|..+.. .+..|..|+|-..|.+.-++++. +|.++....
T Consensus 15 G~t~i~~d~~gefi~tcgsd----g~ir~~~~~sd~e~P~ti~~--~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 15 GLTLICYDPDGEFICTCGSD----GDIRKWKTNSDEEEPETIDI--SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred ceEEEEEcCCCCEEEEecCC----CceEEeecCCcccCCchhhc--cCceeEEEeecccceEEeeccceEEEeeCCCCCc
Confidence 344555666665 4555554 211111111 1134555542 46789999999999999998885 466665443
No 52
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=63.75 E-value=79 Score=36.56 Aligned_cols=56 Identities=16% Similarity=0.243 Sum_probs=29.5
Q ss_pred CCcEEEEcCCCCCCCCCCCCCceeecEEEeecCCCCeEEEEccCcEEEEEecCCcEEEEeC
Q 006205 265 SGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVYTMGS 325 (657)
Q Consensus 265 ~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~~~~i~~I~~G~~~t~aLt~~G~Vy~wG~ 325 (657)
++.||+.|-.+. .... .......|..-.. ..+........+.-+..-+|++|+-|-
T Consensus 475 ~~~iYvvGG~~~-~~~~-~~VE~ydp~~~~W---~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 475 NGKIYVVGGFDG-TSAL-SSVERYDPETNQW---TMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred CCEEEEECCccC-CCcc-ceEEEEcCCCCce---eEcccCccccccccEEEECCEEEEEec
Confidence 999999997543 1110 1111112211110 112223446666667778899999985
No 53
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=61.76 E-value=33 Score=34.30 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=24.0
Q ss_pred ceEEEEeeCCceEEEEecCCcEEEEec
Q 006205 183 IHVSSISCGPWHTAVVTSAGQLFTFGD 209 (657)
Q Consensus 183 ~~I~~Ia~G~~hs~~Lt~~G~vy~wG~ 209 (657)
.+++.+.|-.++.++||++|.+|+|--
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl 39 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNL 39 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEEC
Confidence 468889999999999999999999963
No 54
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=61.41 E-value=1.3e+02 Score=30.71 Aligned_cols=39 Identities=18% Similarity=0.231 Sum_probs=25.0
Q ss_pred cccceEeccCCCCcEEE-EEeCCceEEEE-EcCCcEEEEcCC
Q 006205 116 VLHPKLIDALSNMNIEL-VACGEYHTCAV-TLSGDLYTWGDG 155 (657)
Q Consensus 116 ~~~P~~v~~l~~~~I~~-Va~G~~hs~aL-t~dG~Vy~wG~n 155 (657)
...|+.+..-.+ .|+. +-|-+.|+++- ++++.|-.|-..
T Consensus 133 ~App~E~~ghtg-~Ir~v~wc~eD~~iLSSadd~tVRLWD~r 173 (334)
T KOG0278|consen 133 KAPPKEISGHTG-GIRTVLWCHEDKCILSSADDKTVRLWDHR 173 (334)
T ss_pred CCCchhhcCCCC-cceeEEEeccCceEEeeccCCceEEEEec
Confidence 345565554333 3444 46777887766 788999999644
No 55
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=61.29 E-value=1.7e+02 Score=33.93 Aligned_cols=57 Identities=14% Similarity=0.114 Sum_probs=31.4
Q ss_pred EEecCCcEEEEeCCCCCCCCCCCCCCCcceeeccccCCCCEEE---EEEccccccccccCCeEEEEec
Q 006205 313 ALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEE---IACGSYHVAVLTSKTEVYTWGK 377 (657)
Q Consensus 313 aLt~~G~Vy~wG~n~~GqLG~~~~~~~~p~~v~~~l~~~~V~~---Ia~G~~ht~aLt~~G~vy~WG~ 377 (657)
+..-+|.||+.|-.+. +.. ...-... .+....+.. +.....+..+..-++++|+-|.
T Consensus 471 ~a~~~~~iYvvGG~~~-~~~-----~~~VE~y--dp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDG-TSA-----LSSVERY--DPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEEECCEEEEECCccC-CCc-----cceEEEE--cCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 4455779999995432 110 0110111 112223333 3446677777788999999985
No 56
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=59.91 E-value=2.1e+02 Score=29.31 Aligned_cols=52 Identities=19% Similarity=0.348 Sum_probs=31.4
Q ss_pred CCCcEEEEcCCCCCCCCCCCCCceeecEEEeecCCCCeEEEEcc--CcEEEEEecCCcEEEEeCC
Q 006205 264 SSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACG--HSLTVALTTSGHVYTMGSP 326 (657)
Q Consensus 264 ~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~~~~i~~I~~G--~~~t~aLt~~G~Vy~wG~n 326 (657)
.+|.|++|-.... .-...+.|.. +..|.++... ....++.++.|+.|+|-.-
T Consensus 144 qsg~irvWDl~~~------~c~~~liPe~-----~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 144 QSGNIRVWDLGEN------SCTHELIPED-----DTSIQSLTVMPDGSMLAAANNKGNCYVWRLL 197 (311)
T ss_pred CCCcEEEEEccCC------ccccccCCCC-----CcceeeEEEcCCCcEEEEecCCccEEEEEcc
Confidence 5899999965332 1122233322 2345555443 4566788999999999853
No 57
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=59.50 E-value=1.6e+02 Score=31.33 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=11.9
Q ss_pred EEEEEecCCcEEEEeC
Q 006205 310 LTVALTTSGHVYTMGS 325 (657)
Q Consensus 310 ~t~aLt~~G~Vy~wG~ 325 (657)
+..++.-+|++|++|-
T Consensus 314 ~~~~~~~~~~iyv~GG 329 (346)
T TIGR03547 314 YGVSVSWNNGVLLIGG 329 (346)
T ss_pred eeEEEEcCCEEEEEec
Confidence 3345667899999994
No 58
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=58.80 E-value=1.5e+02 Score=30.28 Aligned_cols=47 Identities=13% Similarity=0.063 Sum_probs=27.4
Q ss_pred ceEEEEeeCCceEEEEecCCcEEEEecCCCCc-cCCCCCcccccceeee
Q 006205 183 IHVSSISCGPWHTAVVTSAGQLFTFGDGTFGV-LGHGDRKSVSIPREVE 230 (657)
Q Consensus 183 ~~I~~Ia~G~~hs~~Lt~~G~vy~wG~n~~Gq-LG~g~~~~~~~P~~v~ 230 (657)
.+|-.++.-+.|- +..-+|.||.|-.|++-. ++....-....|..+.
T Consensus 63 gpiy~~~f~d~~L-ls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~ 110 (325)
T KOG0649|consen 63 GPIYYLAFHDDFL-LSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVD 110 (325)
T ss_pred CCeeeeeeehhhe-eeccCceEEEeeehhhhhhccchhhhhhcCccccC
Confidence 3566666554443 344569999999987755 4433333344455443
No 59
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.44 E-value=8 Score=30.82 Aligned_cols=26 Identities=38% Similarity=0.422 Sum_probs=20.7
Q ss_pred cchhhhhhhhHHHHHHHHHHHhhhhc
Q 006205 631 VVDDAKRTNDSLSQEVIKLRAQVFAF 656 (657)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (657)
-+++||..|..|.||++.+|.+.+.|
T Consensus 26 EieELKEknn~l~~e~q~~q~~reaL 51 (79)
T COG3074 26 EIEELKEKNNSLSQEVQNAQHQREAL 51 (79)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHH
Confidence 36889999999999999887766544
No 60
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=57.91 E-value=5.7 Score=27.34 Aligned_cols=12 Identities=42% Similarity=0.811 Sum_probs=6.0
Q ss_pred CCeeeCcchHHh
Q 006205 476 KPYRVCDNCFNK 487 (657)
Q Consensus 476 ~~~RvC~~C~~~ 487 (657)
...+|||.|.+.
T Consensus 22 F~~~VCD~CRD~ 33 (34)
T PF01286_consen 22 FDLPVCDKCRDK 33 (34)
T ss_dssp TS-S--TTT-ST
T ss_pred CCccccccccCC
Confidence 668999999763
No 61
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=57.16 E-value=7.7 Score=40.80 Aligned_cols=75 Identities=24% Similarity=0.485 Sum_probs=44.2
Q ss_pred EcCCCceeeeeeec-cccccCcccCCCCCCCCCcccccccccccccceeeccCCCccccccccCCC-CCCCee--eCcch
Q 006205 409 ACGTNFTAAICLHK-WVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPN-PNKPYR--VCDNC 484 (657)
Q Consensus 409 a~G~~hT~al~~~k-wv~~~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~-~~~~~R--vC~~C 484 (657)
.||+...+.+.... -..+...-.|+.|+..+. |. |..|.+||. +++.....+..+ ....+| +|+.|
T Consensus 189 vCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~-~~--R~~C~~Cg~-------~~~l~y~~~e~~~~~~~~r~e~C~~C 258 (305)
T TIGR01562 189 ACGSPPVASMVRQGGKETGLRYLSCSLCATEWH-YV--RVKCSHCEE-------SKHLAYLSLEHDAEKAVLKAETCDSC 258 (305)
T ss_pred CCCChhhhhhhcccCCCCCceEEEcCCCCCccc-cc--CccCCCCCC-------CCceeeEeecCCCCCcceEEeecccc
Confidence 57776665543211 123344567999999876 44 577998885 233333332221 123456 99999
Q ss_pred HHhhhcccc
Q 006205 485 FNKLRKTFD 493 (657)
Q Consensus 485 ~~~~~~~~~ 493 (657)
..-++..+.
T Consensus 259 ~~YlK~~~~ 267 (305)
T TIGR01562 259 QGYLKILYQ 267 (305)
T ss_pred ccchhhhcc
Confidence 998877654
No 62
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=55.52 E-value=9 Score=40.34 Aligned_cols=76 Identities=20% Similarity=0.357 Sum_probs=45.9
Q ss_pred EEcCCCceeeeeeeccccccCcccCCCCCCCCCcccccccccccccceeeccCCCccccccccCCC-CCCCeeeCcchHH
Q 006205 408 IACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPN-PNKPYRVCDNCFN 486 (657)
Q Consensus 408 Ia~G~~hT~al~~~kwv~~~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~-~~~~~RvC~~C~~ 486 (657)
=.||+...+.+....-..+...-.|+.|+..+. |. |..|.+||. +.+.....+... .....-+|+.|..
T Consensus 191 PvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~-~~--R~~C~~Cg~-------~~~l~y~~~~~~~~~~r~e~C~~C~~ 260 (309)
T PRK03564 191 PVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWH-VV--RVKCSNCEQ-------SGKLHYWSLDSEQAAVKAESCGDCGT 260 (309)
T ss_pred CCCCCcchhheeeccCCCCceEEEcCCCCCccc-cc--CccCCCCCC-------CCceeeeeecCCCcceEeeecccccc
Confidence 357777766643211123445677999999876 44 578999985 233333322221 1235578999999
Q ss_pred hhhcccc
Q 006205 487 KLRKTFD 493 (657)
Q Consensus 487 ~~~~~~~ 493 (657)
-++....
T Consensus 261 YlK~~~~ 267 (309)
T PRK03564 261 YLKILYQ 267 (309)
T ss_pred cceeccc
Confidence 8877643
No 63
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=54.58 E-value=3.1e+02 Score=29.62 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=13.3
Q ss_pred ceEEEEEcCCcEEEEcCC
Q 006205 138 YHTCAVTLSGDLYTWGDG 155 (657)
Q Consensus 138 ~hs~aLt~dG~Vy~wG~n 155 (657)
.|+++...+++||.+|-.
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 466555468999999964
No 64
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=51.95 E-value=26 Score=27.41 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=24.8
Q ss_pred CCCcccchhhhhhhhHHHHHHHHHHHhhh
Q 006205 626 TSPKIVVDDAKRTNDSLSQEVIKLRAQVF 654 (657)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (657)
..+...+++|...-.+|..||.++++++.
T Consensus 17 dLs~lSv~EL~~RIa~L~aEI~R~~~~~~ 45 (59)
T PF06698_consen 17 DLSLLSVEELEERIALLEAEIARLEAAIA 45 (59)
T ss_pred CchhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556689999999999999999999764
No 65
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.74 E-value=7 Score=35.32 Aligned_cols=53 Identities=34% Similarity=0.716 Sum_probs=38.2
Q ss_pred CcccCCCCCCC-CCcccccccccccccceeeccCCCccccccccCCCCCCCeeeCcchHHhh
Q 006205 428 DQSMCSGCRLP-FNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKL 488 (657)
Q Consensus 428 d~~~C~~C~~~-F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~ 488 (657)
|-..|..|... |. -.-+ |.|..|-..||..|--+-.+.. +|-.-||..|-...
T Consensus 64 ddatC~IC~KTKFA-DG~G-H~C~YCq~r~CARCGGrv~lrs------NKv~wvcnlc~k~q 117 (169)
T KOG3799|consen 64 DDATCGICHKTKFA-DGCG-HNCSYCQTRFCARCGGRVSLRS------NKVMWVCNLCRKQQ 117 (169)
T ss_pred cCcchhhhhhcccc-cccC-cccchhhhhHHHhcCCeeeecc------CceEEeccCCcHHH
Confidence 44567777665 54 3334 9999999999999987754433 57778999997653
No 66
>COG5570 Uncharacterized small protein [Function unknown]
Probab=50.91 E-value=15 Score=27.64 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=21.9
Q ss_pred cccchhhhhhhhHHHHHHHHHHHhh
Q 006205 629 KIVVDDAKRTNDSLSQEVIKLRAQV 653 (657)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (657)
...+.+||+..=.|.+||++|++|+
T Consensus 32 d~~i~eLKRrKL~lKeeIEkLka~~ 56 (57)
T COG5570 32 DLAIRELKRRKLRLKEEIEKLKAQM 56 (57)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3457889999999999999999996
No 67
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=49.56 E-value=13 Score=33.04 Aligned_cols=33 Identities=36% Similarity=0.851 Sum_probs=25.4
Q ss_pred cccCCCCCCCCCcc---------cccccccccccceeeccCC
Q 006205 429 QSMCSGCRLPFNNF---------KRKRHNCYNCGLVFCHSCS 461 (657)
Q Consensus 429 ~~~C~~C~~~F~~f---------~rkrh~C~~cG~~~C~~Cs 461 (657)
...|-+|..+|..- ...|.-|..|...||.+|=
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD 96 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCD 96 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccc
Confidence 45699999999732 2335679999999999983
No 68
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=49.19 E-value=4.3e+02 Score=29.75 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=19.4
Q ss_pred EEEEEccccccccccCCeEEEEecCCCCCC
Q 006205 354 EEIACGSYHVAVLTSKTEVYTWGKGANGRL 383 (657)
Q Consensus 354 ~~Ia~G~~ht~aLt~~G~vy~WG~n~~GqL 383 (657)
+..+--+...++=+.|+.+|.+.-.++|.+
T Consensus 453 v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~ 482 (626)
T KOG2106|consen 453 VRYSPDGAFLAVGSHDNHIYIYRVSANGRK 482 (626)
T ss_pred EEEcCCCCEEEEecCCCeEEEEEECCCCcE
Confidence 333444445556678899999987776653
No 69
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=48.74 E-value=3.8e+02 Score=28.93 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=13.1
Q ss_pred ceEEEEecCCcEEEEecC
Q 006205 193 WHTAVVTSAGQLFTFGDG 210 (657)
Q Consensus 193 ~hs~~Lt~~G~vy~wG~n 210 (657)
.|+++...+++||.+|-.
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 466665468999999953
No 70
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=48.49 E-value=28 Score=23.60 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.5
Q ss_pred eEEEEeeCC-ceEEEEecCCcEEEE
Q 006205 184 HVSSISCGP-WHTAVVTSAGQLFTF 207 (657)
Q Consensus 184 ~I~~Ia~G~-~hs~~Lt~~G~vy~w 207 (657)
.+++|++|. ....+++.+|.||..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 699999999 899999999999854
No 71
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=46.90 E-value=18 Score=36.39 Aligned_cols=47 Identities=23% Similarity=0.544 Sum_probs=32.8
Q ss_pred EEEEcCCCceeeeeeec----cccccCcccCCCCCCCCCc------ccccccccccccceeec
Q 006205 406 KSIACGTNFTAAICLHK----WVSGVDQSMCSGCRLPFNN------FKRKRHNCYNCGLVFCH 458 (657)
Q Consensus 406 ~~Ia~G~~hT~al~~~k----wv~~~d~~~C~~C~~~F~~------f~rkrh~C~~cG~~~C~ 458 (657)
.+++|.. |.+. |-..++++.|.+|+..|.- +.-...||.+|+..|=+
T Consensus 111 rqFaC~~------Cd~~WwRrvp~rKeVSRCr~C~~rYDPVP~dkmwG~aef~C~~C~h~F~G 167 (278)
T PF15135_consen 111 RQFACSS------CDHMWWRRVPQRKEVSRCRKCRKRYDPVPCDKMWGIAEFHCPKCRHNFRG 167 (278)
T ss_pred eeeeccc------cchHHHhccCcccccccccccccccCCCccccccceeeeecccccccchh
Confidence 4567764 4444 3455789999999999872 22346789999988843
No 72
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=46.83 E-value=42 Score=22.74 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.7
Q ss_pred cEEEEEeCC-ceEEEEEcCCcEEEE
Q 006205 129 NIELVACGE-YHTCAVTLSGDLYTW 152 (657)
Q Consensus 129 ~I~~Va~G~-~hs~aLt~dG~Vy~w 152 (657)
.+++|++|. ....+|+.+|.||..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 789999999 889999999999964
No 73
>PHA02790 Kelch-like protein; Provisional
Probab=46.70 E-value=2e+02 Score=32.42 Aligned_cols=14 Identities=29% Similarity=0.385 Sum_probs=10.5
Q ss_pred EEEcCCcEEEEcCC
Q 006205 142 AVTLSGDLYTWGDG 155 (657)
Q Consensus 142 aLt~dG~Vy~wG~n 155 (657)
++.-+|.||..|-.
T Consensus 314 ~v~~~~~iYviGG~ 327 (480)
T PHA02790 314 GVPANNKLYVVGGL 327 (480)
T ss_pred EEEECCEEEEECCc
Confidence 34568999999854
No 74
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=45.23 E-value=5.7 Score=38.64 Aligned_cols=14 Identities=43% Similarity=0.809 Sum_probs=6.7
Q ss_pred ccccccccceeecc
Q 006205 446 RHNCYNCGLVFCHS 459 (657)
Q Consensus 446 rh~C~~cG~~~C~~ 459 (657)
||-|.-||+.|=..
T Consensus 145 r~lct~cgkgfndt 158 (267)
T KOG3576|consen 145 RHLCTFCGKGFNDT 158 (267)
T ss_pred HHHHhhccCcccch
Confidence 44455555554443
No 75
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=44.26 E-value=8.3 Score=26.91 Aligned_cols=34 Identities=35% Similarity=0.621 Sum_probs=21.7
Q ss_pred cccccccceeeccCCCccccccccCCCCCCCeeeCcchHHhhhccc
Q 006205 447 HNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTF 492 (657)
Q Consensus 447 h~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~~~~ 492 (657)
.-|..||.++-. .+++.+..-+||.|-..|.+..
T Consensus 2 r~C~~Cg~~Yh~------------~~~pP~~~~~Cd~cg~~L~qR~ 35 (36)
T PF05191_consen 2 RICPKCGRIYHI------------EFNPPKVEGVCDNCGGELVQRK 35 (36)
T ss_dssp EEETTTTEEEET------------TTB--SSTTBCTTTTEBEBEEG
T ss_pred cCcCCCCCcccc------------ccCCCCCCCccCCCCCeeEeCC
Confidence 347777777742 2233577889999988776543
No 76
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=44.16 E-value=5.6 Score=30.08 Aligned_cols=29 Identities=38% Similarity=0.941 Sum_probs=16.5
Q ss_pred CCCCCCCCCccc-----ccccccccccceeeccC
Q 006205 432 CSGCRLPFNNFK-----RKRHNCYNCGLVFCHSC 460 (657)
Q Consensus 432 C~~C~~~F~~f~-----rkrh~C~~cG~~~C~~C 460 (657)
|-+|..+|..-. ..+..|..|...||.+|
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC 35 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC 35 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc
Confidence 678888887321 24688999999999988
No 77
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=44.05 E-value=13 Score=35.14 Aligned_cols=11 Identities=45% Similarity=1.162 Sum_probs=5.8
Q ss_pred cccccccccee
Q 006205 446 RHNCYNCGLVF 456 (657)
Q Consensus 446 rh~C~~cG~~~ 456 (657)
+++|.+||..|
T Consensus 28 ~~~c~~c~~~f 38 (154)
T PRK00464 28 RRECLACGKRF 38 (154)
T ss_pred eeeccccCCcc
Confidence 35555555544
No 78
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=43.53 E-value=6.3e+02 Score=29.99 Aligned_cols=110 Identities=12% Similarity=0.103 Sum_probs=62.3
Q ss_pred EEEEEcCCcEEEEeCCCCCCcCCCCCC-CcccceEeccCCCCcEEEEEeCCceEEEE--EcCCcEEEEcCCCCCCCccCC
Q 006205 88 AALVNKQGEVFSWGEESGGRLGHGVDS-DVLHPKLIDALSNMNIELVACGEYHTCAV--TLSGDLYTWGDGTYNFGLLGH 164 (657)
Q Consensus 88 ~~~lt~~G~Vy~wG~n~~GqLG~g~~~-~~~~P~~v~~l~~~~I~~Va~G~~hs~aL--t~dG~Vy~wG~n~~~~GqLG~ 164 (657)
++.+...|+=.++|...-|||+.-.-. ..+..++--.+. .+..++-...-.++. .+||+|-.|-... |
T Consensus 312 t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~--~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S---g---- 382 (893)
T KOG0291|consen 312 TVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSD--RITSLAYSPDGQLIATGAEDGKVKVWNTQS---G---- 382 (893)
T ss_pred EEEecccCCEEEEcCCccceEEEEEeeccceeeecccccc--ceeeEEECCCCcEEEeccCCCcEEEEeccC---c----
Confidence 445556688788887777777653211 111111111111 455554444433333 3688888885441 1
Q ss_pred CCCcceeeeeeecCCCCCceEEEEeeCCceEEEEecCCcEEEEecCCC
Q 006205 165 GNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTF 212 (657)
Q Consensus 165 ~~~~~~~~P~~v~~~l~~~~I~~Ia~G~~hs~~Lt~~G~vy~wG~n~~ 212 (657)
+.-.....+..+...++++.-.+..+-..-||.|-.|--..|
T Consensus 383 ------fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 383 ------FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred ------eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 112223333455667777777777777888999999975544
No 79
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=42.30 E-value=5e+02 Score=28.53 Aligned_cols=70 Identities=11% Similarity=0.087 Sum_probs=41.5
Q ss_pred CCeEEEEe-cCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEec--cCCCCcEEEEEeCCceEEEEEcCCcEEEE
Q 006205 76 LDVQNIAC-GGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLID--ALSNMNIELVACGEYHTCAVTLSGDLYTW 152 (657)
Q Consensus 76 ~~I~~Ia~-G~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~--~l~~~~I~~Va~G~~hs~aLt~dG~Vy~w 152 (657)
.+|+.+.- -..+-++|+++|.++..- -.|.. ....+..+. ...+.+|-.+..+.+-.++||.++++|.-
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v 152 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVV 152 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEe--CCCce------eechhhhccccCcccccccccccCCCCEEEECCCCeEEEE
Confidence 36666664 356788999999988763 22322 111122221 11123444556666668899999999988
Q ss_pred c
Q 006205 153 G 153 (657)
Q Consensus 153 G 153 (657)
=
T Consensus 153 ~ 153 (410)
T PF04841_consen 153 N 153 (410)
T ss_pred e
Confidence 3
No 80
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=42.09 E-value=4e+02 Score=27.28 Aligned_cols=114 Identities=19% Similarity=0.173 Sum_probs=58.1
Q ss_pred ccccCCCCcEEEEcCCCCCCccCCCCCCCccccccccccCCceeecccCCCCeEEEEecCCeEEEEEcCCcEEEEeCCCC
Q 006205 26 HDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEESG 105 (657)
Q Consensus 26 ~~~l~~~G~Vy~WG~n~~~G~LG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~I~~Ia~G~~h~~~lt~~G~Vy~wG~n~~ 105 (657)
..+-..+|++.+.--+. |--+. + ...-+.|..-+...+.+|-.++.-+.|- +.--||.||.|=.|..
T Consensus 25 l~agn~~G~iav~sl~s----l~s~s-----a---~~~gk~~iv~eqahdgpiy~~~f~d~~L-ls~gdG~V~gw~W~E~ 91 (325)
T KOG0649|consen 25 LFAGNLFGDIAVLSLKS----LDSGS-----A---EPPGKLKIVPEQAHDGPIYYLAFHDDFL-LSGGDGLVYGWEWNEE 91 (325)
T ss_pred EEEecCCCeEEEEEehh----hhccc-----c---CCCCCcceeeccccCCCeeeeeeehhhe-eeccCceEEEeeehhh
Confidence 34556666666666555 11111 1 1222333333334445677777765554 4455699999988765
Q ss_pred CC-cCCCCCCCcccceEeccCCCCcE--EEEEeCCceEEEEEcCCcEEEE
Q 006205 106 GR-LGHGVDSDVLHPKLIDALSNMNI--ELVACGEYHTCAVTLSGDLYTW 152 (657)
Q Consensus 106 Gq-LG~g~~~~~~~P~~v~~l~~~~I--~~Va~G~~hs~aLt~dG~Vy~w 152 (657)
-. ++...--.+..|..+..++-..| ..+.-.++..++---|+.+|+|
T Consensus 92 ~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~ 141 (325)
T KOG0649|consen 92 EESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQV 141 (325)
T ss_pred hhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEE
Confidence 54 55444445566766654332222 2222233333333345566666
No 81
>PHA02713 hypothetical protein; Provisional
Probab=41.85 E-value=2.8e+02 Score=31.93 Aligned_cols=14 Identities=21% Similarity=0.470 Sum_probs=10.3
Q ss_pred cccccCCeEEEEec
Q 006205 364 AVLTSKTEVYTWGK 377 (657)
Q Consensus 364 ~aLt~~G~vy~WG~ 377 (657)
.+..-+|+||+.|-
T Consensus 458 ~~~~~~~~IYv~GG 471 (557)
T PHA02713 458 GVVSHKDDIYVVCD 471 (557)
T ss_pred cEEEECCEEEEEeC
Confidence 34456789999984
No 82
>PHA02790 Kelch-like protein; Provisional
Probab=41.50 E-value=1.9e+02 Score=32.62 Aligned_cols=15 Identities=13% Similarity=0.390 Sum_probs=11.3
Q ss_pred EEEEcCCcEEEEcCC
Q 006205 141 CAVTLSGDLYTWGDG 155 (657)
Q Consensus 141 ~aLt~dG~Vy~wG~n 155 (657)
.+..-+|+||+.|..
T Consensus 357 ~~~~~~g~IYviGG~ 371 (480)
T PHA02790 357 AVASINNVIYVIGGH 371 (480)
T ss_pred EEEEECCEEEEecCc
Confidence 445568999999864
No 83
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=39.33 E-value=7.8e+02 Score=29.85 Aligned_cols=121 Identities=12% Similarity=0.056 Sum_probs=63.2
Q ss_pred EecCCeEEEEEcCCcEEEEeCCCCCC---cCCCCCCCcccceEeccCCCCcEEEEEeC-----CceEEEEEcCCcEEEEc
Q 006205 82 ACGGRHAALVNKQGEVFSWGEESGGR---LGHGVDSDVLHPKLIDALSNMNIELVACG-----EYHTCAVTLSGDLYTWG 153 (657)
Q Consensus 82 a~G~~h~~~lt~~G~Vy~wG~n~~Gq---LG~g~~~~~~~P~~v~~l~~~~I~~Va~G-----~~hs~aLt~dG~Vy~wG 153 (657)
+....+.+++|+.|++|..-...--. .+.|.. ....+....+.+|+.+.+- ....+++|++|.+.-.-
T Consensus 543 ~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~----i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~ 618 (800)
T TIGR01063 543 ASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKP----IVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTS 618 (800)
T ss_pred ecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcC----HHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEE
Confidence 34456688999999999984322111 111111 1112233345677766652 23578889999877653
Q ss_pred CCCCCC-CccCCCCCcceeeeeeecCCCCCceEEEE--eeCCceEEEEecCCcEEEEecCCCCccC
Q 006205 154 DGTYNF-GLLGHGNEVSHWVPKRVNGPLEGIHVSSI--SCGPWHTAVVTSAGQLFTFGDGTFGVLG 216 (657)
Q Consensus 154 ~n~~~~-GqLG~~~~~~~~~P~~v~~~l~~~~I~~I--a~G~~hs~~Lt~~G~vy~wG~n~~GqLG 216 (657)
...+.. ...| .......++..++.+ +....+.+++|++|++|.+-....-..|
T Consensus 619 l~~~~~~~r~G----------~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~g 674 (800)
T TIGR01063 619 LTEFSNIRSNG----------IIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMG 674 (800)
T ss_pred hHHhhhhccCC----------cccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcC
Confidence 332110 0001 000000123344443 3344678999999999998655443333
No 84
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=38.82 E-value=4.8e+02 Score=27.28 Aligned_cols=16 Identities=6% Similarity=0.048 Sum_probs=11.0
Q ss_pred ccccccCCeEEEEecC
Q 006205 363 VAVLTSKTEVYTWGKG 378 (657)
Q Consensus 363 t~aLt~~G~vy~WG~n 378 (657)
+.+...++++|+.|-.
T Consensus 217 ~~~~~~~~~iyv~GG~ 232 (323)
T TIGR03548 217 ASIKINESLLLCIGGF 232 (323)
T ss_pred eEEEECCCEEEEECCc
Confidence 3344457899999854
No 85
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.77 E-value=3.8e+02 Score=33.71 Aligned_cols=159 Identities=18% Similarity=0.152 Sum_probs=80.2
Q ss_pred EEEecCCcEEEEecCCCCccCCCCCc--ccccceeeeccCCCeEEEEEeCCCeeEEEEEeeecCCCccccCCCcEEEEcC
Q 006205 196 AVVTSAGQLFTFGDGTFGVLGHGDRK--SVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGD 273 (657)
Q Consensus 196 ~~Lt~~G~vy~wG~n~~GqLG~g~~~--~~~~P~~v~~l~~~~I~~Ia~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~ 273 (657)
+-+|.|.+||.|-.+..+++-.-+.. .+..-..|..-.|+-+.. ..|.++|. .--+++..|-
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~----IqhlLvva------------T~~ei~ilgV 156 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPE----IQHLLVVA------------TPVEIVILGV 156 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhh----hheeEEec------------ccceEEEEEE
Confidence 56788999999998876665432211 111111121112211111 24667665 4667777774
Q ss_pred CCCC-CCCCCCCCceeecEEEeecCCCCeEEEEc-cCcEEEEE-ecCCcEEEEeCCCC-----CCCCCCC----------
Q 006205 274 GDKG-RLGHGDKEAKLVPTCVAALVEPNFCRVAC-GHSLTVAL-TTSGHVYTMGSPVY-----GQLGNPQ---------- 335 (657)
Q Consensus 274 n~~g-qLG~g~~~~~~~P~~v~~l~~~~i~~I~~-G~~~t~aL-t~~G~Vy~wG~n~~-----GqLG~~~---------- 335 (657)
.... ..+...-. ...+|.. |-+-.++. |++|+||.-|.+.. .|.+.+-
T Consensus 157 ~~~~~~~~~~~f~--------------~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kicl 222 (1311)
T KOG1900|consen 157 SFDEFTGELSIFN--------------TSFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICL 222 (1311)
T ss_pred EeccccCcccccc--------------cceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccC
Confidence 2211 11111000 0122333 44444444 77888887776541 1111111
Q ss_pred ----CCCCcceeeccc-cCCCCEEEEEEccccc--cccccCCeEEEEecCCCCCCC
Q 006205 336 ----ADGKLPNRVEGK-LSKSFVEEIACGSYHV--AVLTSKTEVYTWGKGANGRLG 384 (657)
Q Consensus 336 ----~~~~~p~~v~~~-l~~~~V~~Ia~G~~ht--~aLt~~G~vy~WG~n~~GqLG 384 (657)
.....|...... ...+.|.+|+.+.... +++++.|.|=+|=-+.+|+-+
T Consensus 223 t~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~ 278 (1311)
T KOG1900|consen 223 TKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGG 278 (1311)
T ss_pred chhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccc
Confidence 111245533322 2356799999998875 466788988888666666544
No 86
>PLN02193 nitrile-specifier protein
Probab=36.59 E-value=6.5e+02 Score=28.16 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=12.4
Q ss_pred ceEEEEEcCCcEEEEcCC
Q 006205 138 YHTCAVTLSGDLYTWGDG 155 (657)
Q Consensus 138 ~hs~aLt~dG~Vy~wG~n 155 (657)
.|++++. ++.||.+|-.
T Consensus 168 ~h~~~~~-~~~iyv~GG~ 184 (470)
T PLN02193 168 SHGIAQV-GNKIYSFGGE 184 (470)
T ss_pred ccEEEEE-CCEEEEECCc
Confidence 5776655 5789999854
No 87
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=34.93 E-value=90 Score=20.38 Aligned_cols=25 Identities=40% Similarity=0.457 Sum_probs=20.8
Q ss_pred CceEEEEeeCCceEEEEecCCcEEE
Q 006205 182 GIHVSSISCGPWHTAVVTSAGQLFT 206 (657)
Q Consensus 182 ~~~I~~Ia~G~~hs~~Lt~~G~vy~ 206 (657)
++.|..|++|....++.|+.+-|-.
T Consensus 1 gE~i~aia~g~~~vavaTS~~~lRi 25 (27)
T PF12341_consen 1 GEEIEAIAAGDSWVAVATSAGYLRI 25 (27)
T ss_pred CceEEEEEccCCEEEEEeCCCeEEe
Confidence 3579999999999999999886543
No 88
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=34.83 E-value=6.5e+02 Score=27.65 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=18.8
Q ss_pred CCEEEEEEc--cccccccccCCeEEEE
Q 006205 351 SFVEEIACG--SYHVAVLTSKTEVYTW 375 (657)
Q Consensus 351 ~~V~~Ia~G--~~ht~aLt~~G~vy~W 375 (657)
..+.+|+.. +.+.++++.+|.+|..
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ 243 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVV 243 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEE
Confidence 457777776 4567888889999886
No 89
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=34.43 E-value=7.3e+02 Score=28.08 Aligned_cols=89 Identities=17% Similarity=0.267 Sum_probs=48.0
Q ss_pred EEEeeCCceEEEEecCCcEEEEecCCCCccCCCCCcccccceeeeccCCCeEEEEEeCCCeeEEEEEeeecCCCccccCC
Q 006205 186 SSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSS 265 (657)
Q Consensus 186 ~~Ia~G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Ia~G~~hs~al~e~~~~~s~~~~~~~ 265 (657)
.-|.||..|..+.+-.|..+.=-.+.+ +.-+..-|..+..+.+--++--+ ++
T Consensus 215 liit~Gk~H~~Fw~~~~~~l~k~~~~f-----------------ek~ekk~Vl~v~F~engdviTgD-----------S~ 266 (626)
T KOG2106|consen 215 LIITCGKGHLYFWTLRGGSLVKRQGIF-----------------EKREKKFVLCVTFLENGDVITGD-----------SG 266 (626)
T ss_pred EEEEeCCceEEEEEccCCceEEEeecc-----------------ccccceEEEEEEEcCCCCEEeec-----------CC
Confidence 347788888888776665443321111 11111235555555554444332 78
Q ss_pred CcEEEEcCCCCCCCCCCCCCceeecEEEeecCCCCeEEEEccCcEEEEEecCCcEEE
Q 006205 266 GKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVYT 322 (657)
Q Consensus 266 G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~~~~i~~I~~G~~~t~aLt~~G~Vy~ 322 (657)
|.++.|+...+ +.. ..+. +.-|.-+++.+..+|.+..
T Consensus 267 G~i~Iw~~~~~----------~~~---------k~~~-aH~ggv~~L~~lr~GtllS 303 (626)
T KOG2106|consen 267 GNILIWSKGTN----------RIS---------KQVH-AHDGGVFSLCMLRDGTLLS 303 (626)
T ss_pred ceEEEEeCCCc----------eEE---------eEee-ecCCceEEEEEecCccEee
Confidence 99999987321 000 1111 4455666777777777666
No 90
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.30 E-value=6.4 Score=37.56 Aligned_cols=48 Identities=27% Similarity=0.555 Sum_probs=32.5
Q ss_pred ccCCCCCCCCCcccccccccccccceeeccCCCccccccccCCCCCCCeeeCcchHHhhhc
Q 006205 430 SMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRK 490 (657)
Q Consensus 430 ~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~~ 490 (657)
..|..|=.+|. .+.----+||.+||..|..... +..++|..|..++..
T Consensus 132 ~~CPiCl~~~s---ek~~vsTkCGHvFC~~Cik~al----------k~~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 132 YKCPICLDSVS---EKVPVSTKCGHVFCSQCIKDAL----------KNTNKCPTCRKKITH 179 (187)
T ss_pred cCCCceecchh---hccccccccchhHHHHHHHHHH----------HhCCCCCCcccccch
Confidence 45777766665 2222335799999999976642 445889999877644
No 91
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=33.75 E-value=1e+03 Score=29.54 Aligned_cols=116 Identities=10% Similarity=-0.042 Sum_probs=59.3
Q ss_pred CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEE--EeCCceEEEEEcCCcEEEEcCCCCCCCcc
Q 006205 85 GRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELV--ACGEYHTCAVTLSGDLYTWGDGTYNFGLL 162 (657)
Q Consensus 85 ~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~V--a~G~~hs~aLt~dG~Vy~wG~n~~~~GqL 162 (657)
..-.++||++|-|-.--...+..-+.+ +.-+..-.+..+..+ +....+.+++|+.|++|..=.. .+
T Consensus 516 E~v~v~lS~~GyIKr~~~~~~~~q~~g-------~~~~~~ke~D~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy-----~I 583 (957)
T PRK13979 516 EDVVITLSNEGFIKRIPLKSYNRSNSN-------VEDIEYREGDFNKFLIQSNTKDTLLIFTDKGNMYQIKGI-----NI 583 (957)
T ss_pred cceEEEEecCCEEEEcccccccccccc-------ccccccCCCCceEEEEEEcCCCEEEEEECCCeEEEEEee-----eC
Confidence 455678888886655433333221222 111111123344444 4455667899999999986322 22
Q ss_pred CCCCCcceeee--eeec-CCCCCceEEEEeeCC-----ceEEEEecCCcEEEEecCCC
Q 006205 163 GHGNEVSHWVP--KRVN-GPLEGIHVSSISCGP-----WHTAVVTSAGQLFTFGDGTF 212 (657)
Q Consensus 163 G~~~~~~~~~P--~~v~-~~l~~~~I~~Ia~G~-----~hs~~Lt~~G~vy~wG~n~~ 212 (657)
..+.....-.| ..+. ..+++++|+.+.+-. .+.+++|.+|.+.-.-...|
T Consensus 584 Pe~~~~~~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G~VKrt~L~ef 641 (957)
T PRK13979 584 PEFKWKEKGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSGGIKKTSLDKF 641 (957)
T ss_pred CCCCcCCCCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCCeEEEEehhhc
Confidence 22211111111 1111 111367788776653 24688999999887754433
No 92
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=32.58 E-value=1.2e+02 Score=32.18 Aligned_cols=57 Identities=19% Similarity=0.352 Sum_probs=42.2
Q ss_pred ccCCCCcEEEEcCCCCCCccCCCCCCCccccccccccCCceeecccCCCCeEEEEecCC--eEEEEEcCCcEEEEeC
Q 006205 28 DGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGR--HAALVNKQGEVFSWGE 102 (657)
Q Consensus 28 ~l~~~G~Vy~WG~n~~~G~LG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~I~~Ia~G~~--h~~~lt~~G~Vy~wG~ 102 (657)
.....|+||+|--.. ..+.+.++...+.....|+|.+.... ..++++++|.||.|-.
T Consensus 324 ~gnq~g~v~vwdL~~------------------~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 324 LGNQSGKVYVWDLDN------------------NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred hccCCCcEEEEECCC------------------CCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 345678999997655 23347778887777788999887754 4556789999999963
No 93
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]
Probab=32.24 E-value=32 Score=41.83 Aligned_cols=55 Identities=20% Similarity=0.286 Sum_probs=42.9
Q ss_pred cccccCcccCCCCCCCCCcccccccccccccceeeccCCCccccccccCCCCCCCeeeCcchHHhhhcccc
Q 006205 423 WVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTFD 493 (657)
Q Consensus 423 wv~~~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~~~~~ 493 (657)
|..+.-...|..|...|. |+..||||+ |+++ +.....+..|+|..|...+....+
T Consensus 651 w~aDg~aPng~la~t~~~-~~~e~~hsr--~~ls-------------~~~~s~~~~~~~n~t~s~~rn~~~ 705 (1287)
T KOG1841|consen 651 WFADGIAPNGELAETRFT-FTGERHHSR--GKLS-------------LLYSSRKEARPCNITHSVLRNVMF 705 (1287)
T ss_pred eccCCcCCCceeccccee-eeccccccc--cccc-------------ccccccccCCCCcccCccchhhhh
Confidence 777777888999999998 777789999 7766 112235788999999998877544
No 94
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=32.21 E-value=8.4e+02 Score=28.14 Aligned_cols=194 Identities=18% Similarity=0.204 Sum_probs=0.0
Q ss_pred CCcEEEEcCCCCCCccCCCCCCCccccccccccCCceeecccCCCCeEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCC
Q 006205 32 LGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHG 111 (657)
Q Consensus 32 ~G~Vy~WG~n~~~G~LG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~I~~Ia~G~~h~~~lt~~G~Vy~wG~n~~GqLG~g 111 (657)
+|+|.+|..-.....+-.+. -....+...+...-.=+....+.++..++. ||+|-.| .--.+-..
T Consensus 264 ~GqV~lWD~~~~~~~~~s~l--s~~~~sh~~~v~~vvW~~~~~~~~f~s~ss----------DG~i~~W---~~~~l~~P 328 (555)
T KOG1587|consen 264 NGQVVLWDLRKGSDTPPSGL--SALEVSHSEPVTAVVWLQNEHNTEFFSLSS----------DGSICSW---DTDMLSLP 328 (555)
T ss_pred CceEEEEEccCCCCCCCccc--ccccccCCcCeEEEEEeccCCCCceEEEec----------CCcEeee---eccccccc
Q ss_pred CCCCcccceE------eccCCCCcEEEEEeCCceEEEEEcCCcEEEEcCCCCCCCc----cCCCCCcceeeeeeecCCCC
Q 006205 112 VDSDVLHPKL------IDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGL----LGHGNEVSHWVPKRVNGPLE 181 (657)
Q Consensus 112 ~~~~~~~P~~------v~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n~~~~Gq----LG~~~~~~~~~P~~v~~~l~ 181 (657)
.+.....+.. -.......++....=-+|+++-|+.|.||..-...+..+. -++.....+.-|........
T Consensus 329 ~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nP 408 (555)
T KOG1587|consen 329 VEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNP 408 (555)
T ss_pred hhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCC
Q ss_pred CceEEEEeeCCceEEEEecCCcEEEEecCCCCccCCCCCcccccceeeeccCCCeEEEEEeCCCe--eEEEEEeeecCCC
Q 006205 182 GIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWH--TAAVVEVMVGNSS 259 (657)
Q Consensus 182 ~~~I~~Ia~G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Ia~G~~h--s~al~e~~~~~s~ 259 (657)
=..-.-.++|+|++.+..++ ....|..--......+.+++=...| .+++++
T Consensus 409 F~~k~fls~gDW~vriWs~~--------------------~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d------- 461 (555)
T KOG1587|consen 409 FYPKNFLSVGDWTVRIWSED--------------------VIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD------- 461 (555)
T ss_pred CccceeeeeccceeEecccc--------------------CCCCcchhhhhccceeeeeEEcCcCceEEEEEc-------
Q ss_pred ccccCCCcEEEE
Q 006205 260 SSNCSSGKLFTW 271 (657)
Q Consensus 260 ~~~~~~G~ly~w 271 (657)
.+|.|+.|
T Consensus 462 ----~~G~l~iW 469 (555)
T KOG1587|consen 462 ----GDGNLDIW 469 (555)
T ss_pred ----CCCceehh
No 95
>smart00340 HALZ homeobox associated leucin zipper.
Probab=32.13 E-value=48 Score=23.87 Aligned_cols=19 Identities=37% Similarity=0.506 Sum_probs=11.2
Q ss_pred hhhhhhhhHHHHHHHHHHH
Q 006205 633 DDAKRTNDSLSQEVIKLRA 651 (657)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~ 651 (657)
+.|...|.-|..||+.||+
T Consensus 15 e~LteeNrRL~ke~~eLra 33 (44)
T smart00340 15 ESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4455556666666666665
No 96
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=31.96 E-value=3.5e+02 Score=28.38 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=11.8
Q ss_pred ceEEEEEcCCcEEEEcCC
Q 006205 138 YHTCAVTLSGDLYTWGDG 155 (657)
Q Consensus 138 ~hs~aLt~dG~Vy~wG~n 155 (657)
.|++++ -+++||.+|-.
T Consensus 116 ~~~~~~-~~~~iYv~GG~ 132 (323)
T TIGR03548 116 NGSACY-KDGTLYVGGGN 132 (323)
T ss_pred CceEEE-ECCEEEEEeCc
Confidence 355444 47899999865
No 97
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=30.48 E-value=43 Score=37.87 Aligned_cols=59 Identities=20% Similarity=0.249 Sum_probs=44.7
Q ss_pred cCcccCCCCCCCCCcc--cccccccccccceeeccCCCccccccccCCCCCCCeeeCcchHHhhhcccc
Q 006205 427 VDQSMCSGCRLPFNNF--KRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTFD 493 (657)
Q Consensus 427 ~d~~~C~~C~~~F~~f--~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~~~~~ 493 (657)
..+..|-+|+..|. + ..+...|-.|+.-||..|-.++--. .+-.++|+.|-+.+.+...
T Consensus 395 ~~~~~~l~~r~~~~-~r~~~k~~~c~~c~e~~~s~t~~R~~~k-------~~~~vlc~~cs~~~~~l~~ 455 (623)
T KOG4424|consen 395 FSSDYVLGKRKRKA-PRRDNKVTSCDSCEETFNSITFRRHRCK-------AKGAVLCDKCSDFMAKLSY 455 (623)
T ss_pred cccccccccccccC-cccccccccchhhcCchhhHHHhhhhhh-------hccceeeccccchhhhhcc
Confidence 34667888888887 5 3345679999999999997766322 3567999999998887664
No 98
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=29.73 E-value=51 Score=27.13 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=19.2
Q ss_pred cchhhhhhhhHHHHHHHHHHHhh
Q 006205 631 VVDDAKRTNDSLSQEVIKLRAQV 653 (657)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~ 653 (657)
+++++.+.|.-|.+|+++|.+..
T Consensus 1 li~ei~eEn~~Lk~eiqkle~EL 23 (76)
T PF07334_consen 1 LIHEIQEENARLKEEIQKLEAEL 23 (76)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999887744
No 99
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=28.88 E-value=58 Score=22.83 Aligned_cols=18 Identities=22% Similarity=0.536 Sum_probs=15.4
Q ss_pred cEEEEEecCCcEEEEeCC
Q 006205 309 SLTVALTTSGHVYTMGSP 326 (657)
Q Consensus 309 ~~t~aLt~~G~Vy~wG~n 326 (657)
.+.++++.+|.||+.|..
T Consensus 15 ~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred EEEEEECCCCCEEEEEee
Confidence 367899999999999964
No 100
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.89 E-value=22 Score=39.48 Aligned_cols=52 Identities=25% Similarity=0.406 Sum_probs=38.0
Q ss_pred cccCCCCCCCCCcccccccccccccceeeccCCCccccccccCCCCCCCeeeCcchHHhhhc
Q 006205 429 QSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRK 490 (657)
Q Consensus 429 ~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~~ 490 (657)
...|..|--++..-.+ -+||-+||-.|--...... ..+..+-|.-|+..+.-
T Consensus 186 ~~~CPICL~~~~~p~~-----t~CGHiFC~~CiLqy~~~s-----~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVR-----TNCGHIFCGPCILQYWNYS-----AIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccc-----cccCceeeHHHHHHHHhhh-----cccCCccCCchhhhccc
Confidence 4579999888762222 2599999999966654444 14678999999998765
No 101
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=27.68 E-value=33 Score=23.61 Aligned_cols=30 Identities=20% Similarity=0.490 Sum_probs=13.7
Q ss_pred eeccCCCccccccccCCCCCCCeeeCcchHHh
Q 006205 456 FCHSCSSKKSLKASMAPNPNKPYRVCDNCFNK 487 (657)
Q Consensus 456 ~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~ 487 (657)
||..|...-. .......+.+-.||..|-..
T Consensus 2 fC~~CG~~l~--~~ip~gd~r~R~vC~~Cg~I 31 (34)
T PF14803_consen 2 FCPQCGGPLE--RRIPEGDDRERLVCPACGFI 31 (34)
T ss_dssp B-TTT--B-E--EE--TT-SS-EEEETTTTEE
T ss_pred ccccccChhh--hhcCCCCCccceECCCCCCE
Confidence 5555655522 22223446788899999654
No 102
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=27.41 E-value=1.5e+02 Score=31.34 Aligned_cols=57 Identities=19% Similarity=0.367 Sum_probs=40.8
Q ss_pred EEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeCCce--EEEEEcCCcEEEEc
Q 006205 89 ALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYH--TCAVTLSGDLYTWG 153 (657)
Q Consensus 89 ~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~~h--s~aLt~dG~Vy~wG 153 (657)
++....|+||+|-... ......+++.....+..|.+.+....- .++++++|.||-|-
T Consensus 323 a~gnq~g~v~vwdL~~--------~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDN--------NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred hhccCCCcEEEEECCC--------CCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 4456779999997432 223366777777778889988876554 45678899999984
No 103
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=27.19 E-value=2.3e+02 Score=30.83 Aligned_cols=60 Identities=15% Similarity=0.222 Sum_probs=44.4
Q ss_pred EEEEecCCe---EEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeCCceEEEEEcCCcEEEEc
Q 006205 79 QNIACGGRH---AALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWG 153 (657)
Q Consensus 79 ~~Ia~G~~h---~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG 153 (657)
..+.+|..+ .+++..+|++..|-.+ ..+.++ .....+.+|+.=....+|++..|+||++.
T Consensus 163 ~~~~~~~~~~~~vl~i~~~g~l~~w~~~--------------~Wt~l~-~~~~~~~DIi~~kGkfYAvD~~G~l~~i~ 225 (373)
T PLN03215 163 VKVKEGDNHRDGVLGIGRDGKINYWDGN--------------VLKALK-QMGYHFSDIIVHKGQTYALDSIGIVYWIN 225 (373)
T ss_pred EEeecCCCcceEEEEEeecCcEeeecCC--------------eeeEcc-CCCceeeEEEEECCEEEEEcCCCeEEEEe
Confidence 335667665 6677788999888632 234444 24567999999999999999999999985
No 104
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=26.88 E-value=43 Score=25.77 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=23.0
Q ss_pred ccchhhhhhhhHHHHHHHHHHHhhhhcC
Q 006205 630 IVVDDAKRTNDSLSQEVIKLRAQVFAFI 657 (657)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (657)
+.++.+++.|+-|.++|.+|..-|+.|+
T Consensus 14 ~~i~tvk~en~~i~~~ve~i~envk~ll 41 (55)
T PF05377_consen 14 SSINTVKKENEEISESVEKIEENVKDLL 41 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999999999988777653
No 105
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=26.70 E-value=61 Score=27.43 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.0
Q ss_pred cchhhhhhhhHHHHHHHHHHHhhh
Q 006205 631 VVDDAKRTNDSLSQEVIKLRAQVF 654 (657)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~ 654 (657)
-++.|...++-|.+||.+|++|++
T Consensus 50 ~v~~L~~e~~~l~~E~e~L~~~l~ 73 (87)
T PF12709_consen 50 KVDELENENKALKRENEQLKKKLD 73 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888999999999999999875
No 106
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=26.41 E-value=70 Score=24.86 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=20.9
Q ss_pred cchhhhhhhhHHHHHHHHHHHhhh
Q 006205 631 VVDDAKRTNDSLSQEVIKLRAQVF 654 (657)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~ 654 (657)
.+++|...--+|..||.+|++|..
T Consensus 26 sV~El~eRIalLq~EIeRlkAe~~ 49 (65)
T COG5509 26 SVAELEERIALLQAEIERLKAELA 49 (65)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999863
No 107
>PRK00420 hypothetical protein; Validated
Probab=26.21 E-value=44 Score=29.76 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=14.2
Q ss_pred ccCCCCCCCCCcccccccccccccc
Q 006205 430 SMCSGCRLPFNNFKRKRHNCYNCGL 454 (657)
Q Consensus 430 ~~C~~C~~~F~~f~rkrh~C~~cG~ 454 (657)
..|.-|+.+|.-+..++.-|.+||.
T Consensus 24 ~~CP~Cg~pLf~lk~g~~~Cp~Cg~ 48 (112)
T PRK00420 24 KHCPVCGLPLFELKDGEVVCPVHGK 48 (112)
T ss_pred CCCCCCCCcceecCCCceECCCCCC
Confidence 5788899886423333344444444
No 108
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=25.47 E-value=4.9e+02 Score=27.75 Aligned_cols=15 Identities=33% Similarity=0.423 Sum_probs=10.4
Q ss_pred ceEEEEecCCcEEEE
Q 006205 193 WHTAVVTSAGQLFTF 207 (657)
Q Consensus 193 ~hs~~Lt~~G~vy~w 207 (657)
.+.++.+.+|+||+|
T Consensus 362 ~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 362 DGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEeCCceEEEe
Confidence 456667777777775
No 109
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=25.19 E-value=43 Score=30.37 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=12.5
Q ss_pred cCCCCCCCCCccccccccccccccee
Q 006205 431 MCSGCRLPFNNFKRKRHNCYNCGLVF 456 (657)
Q Consensus 431 ~C~~C~~~F~~f~rkrh~C~~cG~~~ 456 (657)
.|..|+..|--+.+.--.|..||..+
T Consensus 11 ~Cp~cg~kFYDLnk~p~vcP~cg~~~ 36 (129)
T TIGR02300 11 ICPNTGSKFYDLNRRPAVSPYTGEQF 36 (129)
T ss_pred cCCCcCccccccCCCCccCCCcCCcc
Confidence 45555555543444334455554443
No 110
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=25.01 E-value=41 Score=29.74 Aligned_cols=10 Identities=30% Similarity=0.753 Sum_probs=4.5
Q ss_pred eeCcchHHhh
Q 006205 479 RVCDNCFNKL 488 (657)
Q Consensus 479 RvC~~C~~~~ 488 (657)
-||..|-..+
T Consensus 27 ivCP~CG~~~ 36 (108)
T PF09538_consen 27 IVCPKCGTEF 36 (108)
T ss_pred ccCCCCCCcc
Confidence 3455554443
No 111
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=24.76 E-value=74 Score=26.90 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=18.6
Q ss_pred chhhhhhhhHHHHHHHHHHHhhh
Q 006205 632 VDDAKRTNDSLSQEVIKLRAQVF 654 (657)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~ 654 (657)
.+.+..-|+.|.+||+-||+||+
T Consensus 19 ~~~~~~e~~~L~eEI~~Lr~qve 41 (86)
T PF12711_consen 19 ESYLEEENEALKEEIQLLREQVE 41 (86)
T ss_pred cchhHHHHHHHHHHHHHHHHHHH
Confidence 34556667899999999999986
No 112
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=24.31 E-value=69 Score=25.13 Aligned_cols=25 Identities=20% Similarity=0.489 Sum_probs=14.8
Q ss_pred chhhhhhhhHHHHHHHHHHHhhhhc
Q 006205 632 VDDAKRTNDSLSQEVIKLRAQVFAF 656 (657)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (657)
++.|...|+.|..|+..|+.++..|
T Consensus 35 ~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 35 VEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666655543
No 113
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=24.25 E-value=64 Score=23.79 Aligned_cols=16 Identities=38% Similarity=0.428 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhhhhc
Q 006205 641 SLSQEVIKLRAQVFAF 656 (657)
Q Consensus 641 ~~~~~~~~~~~~~~~~ 656 (657)
.|.|.|.-|+.||+.|
T Consensus 3 aLrqQv~aL~~qv~~L 18 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRL 18 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3555555555555443
No 114
>PLN02193 nitrile-specifier protein
Probab=24.20 E-value=1e+03 Score=26.55 Aligned_cols=17 Identities=24% Similarity=0.557 Sum_probs=12.2
Q ss_pred ceEEEEEcCCcEEEEcCC
Q 006205 138 YHTCAVTLSGDLYTWGDG 155 (657)
Q Consensus 138 ~hs~aLt~dG~Vy~wG~n 155 (657)
.|++++ .+++||.+|-.
T Consensus 271 ~h~~~~-~~~~iYv~GG~ 287 (470)
T PLN02193 271 FHSMAA-DEENVYVFGGV 287 (470)
T ss_pred ceEEEE-ECCEEEEECCC
Confidence 466555 47899999854
No 115
>KOG3795 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.16 E-value=51 Score=31.33 Aligned_cols=21 Identities=29% Similarity=0.735 Sum_probs=16.1
Q ss_pred ccccccccccc---eeeccCCCcc
Q 006205 444 RKRHNCYNCGL---VFCHSCSSKK 464 (657)
Q Consensus 444 rkrh~C~~cG~---~~C~~Cs~~~ 464 (657)
-+||.|+.|+. .||.+|.-.-
T Consensus 13 eGRs~C~~C~~SRkFfCY~C~VPV 36 (230)
T KOG3795|consen 13 EGRSTCPGCKSSRKFFCYDCRVPV 36 (230)
T ss_pred cccccCCCCCCcceEEEEeecccc
Confidence 35799999985 7899986544
No 116
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=24.10 E-value=30 Score=27.03 Aligned_cols=29 Identities=24% Similarity=0.542 Sum_probs=20.1
Q ss_pred ccccccccceeeccCCCccccccccCCCCCCCeeeC-cchHHhhhccc
Q 006205 446 RHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVC-DNCFNKLRKTF 492 (657)
Q Consensus 446 rh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC-~~C~~~~~~~~ 492 (657)
..||..||... + ...+.| +.|.+.+.+..
T Consensus 3 HkHC~~CG~~I-----------p-------~~~~fCS~~C~~~~~k~q 32 (59)
T PF09889_consen 3 HKHCPVCGKPI-----------P-------PDESFCSPKCREEYRKRQ 32 (59)
T ss_pred CCcCCcCCCcC-----------C-------cchhhhCHHHHHHHHHHH
Confidence 46899998532 1 237899 59999886644
No 117
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=23.45 E-value=71 Score=28.96 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.1
Q ss_pred chhhhhhhhHHHHHHHHHHHhhhh
Q 006205 632 VDDAKRTNDSLSQEVIKLRAQVFA 655 (657)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~ 655 (657)
.++|.+.|-.|.|||.+|+.++..
T Consensus 76 k~eLE~~k~~L~qqv~~L~~e~s~ 99 (135)
T KOG4196|consen 76 KHELEKEKAELQQQVEKLKEENSR 99 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999987654
No 118
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=23.23 E-value=83 Score=24.80 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=20.6
Q ss_pred chhhhhhhhHHHHHHHHHHHhhhhc
Q 006205 632 VDDAKRTNDSLSQEVIKLRAQVFAF 656 (657)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (657)
..+..+-|.-|.+||..|+.+++.|
T Consensus 34 LqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 34 LQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566778899999999999998764
No 119
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=23.05 E-value=1e+03 Score=26.20 Aligned_cols=28 Identities=11% Similarity=0.092 Sum_probs=19.0
Q ss_pred EEEEEeCCCeeEEEEEeeecCCCccccCCCcEEEEcCC
Q 006205 237 TVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDG 274 (657)
Q Consensus 237 I~~Ia~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n 274 (657)
|.+...|.+..++..- ..|++||.|-.-
T Consensus 443 IrSCFgg~~~~fiaSG----------SED~kvyIWhr~ 470 (519)
T KOG0293|consen 443 IRSCFGGGNDKFIASG----------SEDSKVYIWHRI 470 (519)
T ss_pred EEeccCCCCcceEEec----------CCCceEEEEEcc
Confidence 5566666666666641 268999999763
No 120
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=22.77 E-value=54 Score=24.68 Aligned_cols=27 Identities=26% Similarity=0.575 Sum_probs=15.7
Q ss_pred ccCCCCCCCCCccccccccccccccee
Q 006205 430 SMCSGCRLPFNNFKRKRHNCYNCGLVF 456 (657)
Q Consensus 430 ~~C~~C~~~F~~f~rkrh~C~~cG~~~ 456 (657)
.-|..|+..|-....++.+|..||...
T Consensus 21 ~fCP~Cg~~~m~~~~~r~~C~~Cgyt~ 47 (50)
T PRK00432 21 KFCPRCGSGFMAEHLDRWHCGKCGYTE 47 (50)
T ss_pred CcCcCCCcchheccCCcEECCCcCCEE
Confidence 356667664433444567777777654
No 121
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=22.41 E-value=1.4e+03 Score=27.59 Aligned_cols=215 Identities=12% Similarity=0.014 Sum_probs=99.6
Q ss_pred EeCCceEEEEEcCCcEEEEcCCCCCC-CccCCCCCcceeeeeeecCCCCCceEEEEeeC-----CceEEEEecCCcEEEE
Q 006205 134 ACGEYHTCAVTLSGDLYTWGDGTYNF-GLLGHGNEVSHWVPKRVNGPLEGIHVSSISCG-----PWHTAVVTSAGQLFTF 207 (657)
Q Consensus 134 a~G~~hs~aLt~dG~Vy~wG~n~~~~-GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~G-----~~hs~~Lt~~G~vy~w 207 (657)
+....+.+++|+.|++|..-...-.. +..+.|..... .+. ...+++|+.+.+- ....+++|.+|.+.-.
T Consensus 543 ~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~i~~----ll~-L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi 617 (800)
T TIGR01063 543 ASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKPIVN----LLP-LQPDERITAILSVKEFDDGLYLFFATKNGVVKKT 617 (800)
T ss_pred ecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcCHHH----hcc-CCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEE
Confidence 44566688999999999983221100 11111111111 111 2346677776652 2357888999987766
Q ss_pred ecCCCCccCCCCCccccccee-eeccCCCeEEEEEe--CCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCC
Q 006205 208 GDGTFGVLGHGDRKSVSIPRE-VESLKGLRTVRAAC--GVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDK 284 (657)
Q Consensus 208 G~n~~GqLG~g~~~~~~~P~~-v~~l~~~~I~~Ia~--G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~ 284 (657)
-.+.+-.... .-.. +..-.+..++.+.. ...+.++++ +.|++|..-..+--..|....
T Consensus 618 ~l~~~~~~~r-------~G~~aiklke~D~lv~v~~~~~~d~lll~T------------s~Gr~~r~~v~eIp~~gr~~~ 678 (800)
T TIGR01063 618 SLTEFSNIRS-------NGIIAIKLDDGDELISVRLTSGDDEVMLGS------------KNGKAVRFPEEDVRPMGRAAR 678 (800)
T ss_pred EhHHhhhhcc-------CCcccccCCCCCEEEEEEEeCCCCEEEEEE------------CCCcEEEEEhhhcCCcCCCCC
Confidence 4333311100 0000 00011223443322 233455555 689999886554433332221
Q ss_pred CceeecEEEeecCCCCeEEEEc--cCcEEEEEecCCcEEEEeCCCCCCCCCCCCCCCcceeeccccCCCCEEEEE--Ecc
Q 006205 285 EAKLVPTCVAALVEPNFCRVAC--GHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIA--CGS 360 (657)
Q Consensus 285 ~~~~~P~~v~~l~~~~i~~I~~--G~~~t~aLt~~G~Vy~wG~n~~GqLG~~~~~~~~p~~v~~~l~~~~V~~Ia--~G~ 360 (657)
... .+..-.++.|+.+.. ...+.+++|+.|.+.-.=-.++-....+ .+--..+...-.+..++.+. -..
T Consensus 679 Gv~----~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~---~kGv~~ikl~~~~d~lv~~~~v~~~ 751 (800)
T TIGR01063 679 GVR----GIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRG---GKGVKSIKITDRNGQVVGAIAVDDD 751 (800)
T ss_pred Cee----cccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCC---CcceEEEEccCCCCeEEEEEEecCC
Confidence 111 122223455655543 2335677888887766543332211110 00001111000112233322 234
Q ss_pred ccccccccCCeEEEEecCC
Q 006205 361 YHVAVLTSKTEVYTWGKGA 379 (657)
Q Consensus 361 ~ht~aLt~~G~vy~WG~n~ 379 (657)
...+++|++|.+..+-.++
T Consensus 752 ~~v~liT~~G~~lrf~~~e 770 (800)
T TIGR01063 752 DELMLITSAGKLIRTSVQD 770 (800)
T ss_pred CeEEEEecCCeEEEeeHhh
Confidence 4578888999888776543
No 122
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.04 E-value=87 Score=24.63 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=19.8
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhhc
Q 006205 633 DDAKRTNDSLSQEVIKLRAQVFAF 656 (657)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~ 656 (657)
-.++....-+++|+++|++|++.|
T Consensus 44 ~~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 44 LRLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777888999999999998876
No 123
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=21.89 E-value=77 Score=27.82 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=13.1
Q ss_pred chhhhhhhhHHHHHHHHHHHhhhhc
Q 006205 632 VDDAKRTNDSLSQEVIKLRAQVFAF 656 (657)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (657)
.+.+++.|+-|.+|..+|+.||+.|
T Consensus 36 ~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 36 VAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555443
No 124
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=21.83 E-value=72 Score=26.36 Aligned_cols=20 Identities=40% Similarity=0.559 Sum_probs=14.6
Q ss_pred chhhhhhhhHHHHHHHHHHH
Q 006205 632 VDDAKRTNDSLSQEVIKLRA 651 (657)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~ 651 (657)
+++||..|..|.+|+..+++
T Consensus 27 ieELKekn~~L~~e~~~~~~ 46 (79)
T PRK15422 27 IEELKEKNNSLSQEVQNAQH 46 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 57888888888887766444
No 125
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=21.54 E-value=63 Score=21.92 Aligned_cols=24 Identities=21% Similarity=0.538 Sum_probs=13.7
Q ss_pred cCCCCCCCCCcccccccccccccc
Q 006205 431 MCSGCRLPFNNFKRKRHNCYNCGL 454 (657)
Q Consensus 431 ~C~~C~~~F~~f~rkrh~C~~cG~ 454 (657)
.|..|+..+.+-....-.|+.||.
T Consensus 2 ~C~~Cg~~~~~~~~~~irC~~CG~ 25 (32)
T PF03604_consen 2 ICGECGAEVELKPGDPIRCPECGH 25 (32)
T ss_dssp BESSSSSSE-BSTSSTSSBSSSS-
T ss_pred CCCcCCCeeEcCCCCcEECCcCCC
Confidence 477888887733333445777764
No 126
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=21.41 E-value=1.6e+03 Score=27.75 Aligned_cols=203 Identities=12% Similarity=0.068 Sum_probs=0.0
Q ss_pred CCcEEEEEeCCce--EEEEEcCCcEEEEcCCCCCCCccCCCCCcceeeee---eecCCCCCceEEEEeeCCceEEEEecC
Q 006205 127 NMNIELVACGEYH--TCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPK---RVNGPLEGIHVSSISCGPWHTAVVTSA 201 (657)
Q Consensus 127 ~~~I~~Va~G~~h--s~aLt~dG~Vy~wG~n~~~~GqLG~~~~~~~~~P~---~v~~~l~~~~I~~Ia~G~~hs~~Lt~~ 201 (657)
...|.+|+.+..+ .++++.+|.|+.|-..................... ..........+.+++.=..+.+++..+
T Consensus 426 ~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (928)
T PF04762_consen 426 PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSD 505 (928)
T ss_pred CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEe
Q ss_pred CcEEEEecCCCCccCCCCCcccccceeeeccCCCeEEEEEeCCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCC
Q 006205 202 GQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGH 281 (657)
Q Consensus 202 G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Ia~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~ 281 (657)
.. -.....-.+...+.........+....+.-.....+...+.+++-. .+|++| ++..
T Consensus 506 ~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~-----------~~G~v~--------~~~~ 563 (928)
T PF04762_consen 506 SD---SNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQT-----------NDGKVF--------QLSS 563 (928)
T ss_pred cC---cccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEE-----------CCCEEE--------Eeec
Q ss_pred CCCCceeecEEEeecCCCCeEEEEccCc---EEEEEecCCcEEEEeCCCCCCCCCCCCCCCcceeeccccCCCCEEEEEE
Q 006205 282 GDKEAKLVPTCVAALVEPNFCRVACGHS---LTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIAC 358 (657)
Q Consensus 282 g~~~~~~~P~~v~~l~~~~i~~I~~G~~---~t~aLt~~G~Vy~wG~n~~GqLG~~~~~~~~p~~v~~~l~~~~V~~Ia~ 358 (657)
....... .+.+.+...--+...-+.. +.+.|+..|++|+=+ .+....+..+..
T Consensus 564 ~~~~~~~--~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~n~----------------------~~la~~~tSF~v 619 (928)
T PF04762_consen 564 DGELSQI--VKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYANS----------------------RLLASNCTSFAV 619 (928)
T ss_pred CCCcccc--ccCCCCCcEEEEEEECCccceeEEEEECCCCEEEECC----------------------EEEecCCceEEE
Q ss_pred ccccccccccCCeEEEE
Q 006205 359 GSYHVAVLTSKTEVYTW 375 (657)
Q Consensus 359 G~~ht~aLt~~G~vy~W 375 (657)
...|-++.|.+-.+...
T Consensus 620 ~~~~Ll~TT~~h~l~fv 636 (928)
T PF04762_consen 620 TDSFLLFTTTQHTLKFV 636 (928)
T ss_pred EcCEEEEEecCceEEEE
No 127
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=21.21 E-value=1.2e+03 Score=28.58 Aligned_cols=16 Identities=13% Similarity=-0.024 Sum_probs=10.7
Q ss_pred EEEEcCCCceeeeeee
Q 006205 406 KSIACGTNFTAAICLH 421 (657)
Q Consensus 406 ~~Ia~G~~hT~al~~~ 421 (657)
..+|.|-|.-++|-..
T Consensus 29 T~FA~G~WvGVvLDep 44 (1243)
T KOG0971|consen 29 TQFAEGKWVGVVLDEP 44 (1243)
T ss_pred cccccCceEEEEeccc
Confidence 4577787777777543
No 128
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=21.17 E-value=22 Score=34.76 Aligned_cols=37 Identities=35% Similarity=0.776 Sum_probs=28.8
Q ss_pred CcccCCCCCCCCC-ccccccc----------ccccccceeeccCCCcc
Q 006205 428 DQSMCSGCRLPFN-NFKRKRH----------NCYNCGLVFCHSCSSKK 464 (657)
Q Consensus 428 d~~~C~~C~~~F~-~f~rkrh----------~C~~cG~~~C~~Cs~~~ 464 (657)
-.-.|..|+..|+ .|.-||| .|..|++.|-..||-..
T Consensus 144 kr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsles 191 (267)
T KOG3576|consen 144 KRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLES 191 (267)
T ss_pred HHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHH
Confidence 3456999999998 5665555 59999999999997643
No 129
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=21.15 E-value=7.7e+02 Score=25.82 Aligned_cols=140 Identities=22% Similarity=0.273 Sum_probs=72.1
Q ss_pred eCCceEEEEEcCCcEEEEcCCCCCCCccCCCCCcceeeeeeecCCCCCceEEEEeeC---CceEEEEecCCcEEEEecC-
Q 006205 135 CGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCG---PWHTAVVTSAGQLFTFGDG- 210 (657)
Q Consensus 135 ~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~G---~~hs~~Lt~~G~vy~wG~n- 210 (657)
-+.-|-++...||.||.-+... +.+|+-+... -+++.+..| .-|.+++..||..|..-..
T Consensus 61 G~ap~dvapapdG~VWft~qg~---gaiGhLdP~t-------------Gev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~ 124 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGT---GAIGHLDPAT-------------GEVETYPLGSGASPHGIVVGPDGSAWITDTGL 124 (353)
T ss_pred CCCccccccCCCCceEEecCcc---ccceecCCCC-------------CceEEEecCCCCCCceEEECCCCCeeEecCcc
Confidence 3456778889999999877663 4555443321 123333332 3578888888888877432
Q ss_pred CCCccCCCCCcccccceeeeccCCCeEEEEEeCCCeeEEEEEeeecCCCccccCCCcEEEEcCC-CCCCCCCCCCCceee
Q 006205 211 TFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDG-DKGRLGHGDKEAKLV 289 (657)
Q Consensus 211 ~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Ia~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n-~~gqLG~g~~~~~~~ 289 (657)
.-+.++..+......|.. .+.+-+.-.+.++. ..|.||.-|.+ .||+|..........
T Consensus 125 aI~R~dpkt~evt~f~lp---------~~~a~~nlet~vfD------------~~G~lWFt~q~G~yGrLdPa~~~i~vf 183 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLP---------LEHADANLETAVFD------------PWGNLWFTGQIGAYGRLDPARNVISVF 183 (353)
T ss_pred eeEEecCcccceEEeecc---------cccCCCcccceeeC------------CCccEEEeeccccceecCcccCceeee
Confidence 111222111111111111 11122233344444 68999999873 344443221111111
Q ss_pred cEEEeecCCCCeEEEEccCcEEEEEecCCcEEEE
Q 006205 290 PTCVAALVEPNFCRVACGHSLTVALTTSGHVYTM 323 (657)
Q Consensus 290 P~~v~~l~~~~i~~I~~G~~~t~aLt~~G~Vy~w 323 (657)
|.. ..+.-.-++.|-||+||.-
T Consensus 184 paP------------qG~gpyGi~atpdGsvwya 205 (353)
T COG4257 184 PAP------------QGGGPYGICATPDGSVWYA 205 (353)
T ss_pred ccC------------CCCCCcceEECCCCcEEEE
Confidence 110 1234457888999999976
No 130
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=21.01 E-value=3.4e+02 Score=28.09 Aligned_cols=18 Identities=22% Similarity=0.625 Sum_probs=15.2
Q ss_pred CccccCCCCcEEEEcCCC
Q 006205 25 GHDDGDALGDVFIWGEGT 42 (657)
Q Consensus 25 ~~~~l~~~G~Vy~WG~n~ 42 (657)
+|..+.-++++|+||--+
T Consensus 81 GHtvV~y~d~~yvWGGRN 98 (392)
T KOG4693|consen 81 GHTVVEYQDKAYVWGGRN 98 (392)
T ss_pred CceEEEEcceEEEEcCcc
Confidence 677788899999999766
No 131
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=20.85 E-value=72 Score=27.40 Aligned_cols=33 Identities=30% Similarity=0.645 Sum_probs=25.1
Q ss_pred cCcccCCCCCCCCCcccccccccccccceeeccCCC
Q 006205 427 VDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSS 462 (657)
Q Consensus 427 ~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~ 462 (657)
.+...|.-|+++++. +.-.-+.||.++...|..
T Consensus 76 ~~~~~C~vC~k~l~~---~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN---SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC---ceEEEeCCCeEEeccccc
Confidence 466789999999874 234456788999988875
No 132
>PF14445 Prok-RING_2: Prokaryotic RING finger family 2
Probab=20.81 E-value=18 Score=27.05 Aligned_cols=33 Identities=24% Similarity=0.591 Sum_probs=24.5
Q ss_pred cccCCCCCCCCCcccccccccccccceeeccCCCc
Q 006205 429 QSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSK 463 (657)
Q Consensus 429 ~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~ 463 (657)
+..|..|...|. .. ....|..||+--|++|-..
T Consensus 7 ry~CDLCn~~~p-~~-~LRQCvlCGRWaC~sCW~d 39 (57)
T PF14445_consen 7 RYSCDLCNSSHP-IS-ELRQCVLCGRWACNSCWQD 39 (57)
T ss_pred hHhHHhhcccCc-HH-HHHHHhhhchhhhhhhhhh
Confidence 346788888886 22 3457999999999998543
No 133
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=20.56 E-value=7.4e+02 Score=23.55 Aligned_cols=107 Identities=17% Similarity=0.180 Sum_probs=51.7
Q ss_pred CeEEEEecC--CeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeCC--ceEEEEEcCCcEEEE
Q 006205 77 DVQNIACGG--RHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGE--YHTCAVTLSGDLYTW 152 (657)
Q Consensus 77 ~I~~Ia~G~--~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~--~hs~aLt~dG~Vy~w 152 (657)
.|..++... ...++...+|.|+.|-...... ...+.. ....+..+..-. ...++...+|.|+.|
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~-----------~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 78 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL-----------LRTLKG-HTGPVRDVAASADGTYLASGSSDKTIRLW 78 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc-----------EEEEec-CCcceeEEEECCCCCEEEEEcCCCeEEEE
Confidence 344444433 4445556689999996543210 111111 112333443332 345556668999999
Q ss_pred cCCCCCCCccCCCCCcceeeeeeecCCCCCceEEEEeeCCc-eEEEEec-CCcEEEEecC
Q 006205 153 GDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPW-HTAVVTS-AGQLFTFGDG 210 (657)
Q Consensus 153 G~n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~G~~-hs~~Lt~-~G~vy~wG~n 210 (657)
-... + .....+.. ....|..+..... ..++... +|.|+.|-..
T Consensus 79 ~~~~---~----------~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (289)
T cd00200 79 DLET---G----------ECVRTLTG--HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123 (289)
T ss_pred EcCc---c----------cceEEEec--cCCcEEEEEEcCCCCEEEEecCCCeEEEEECC
Confidence 5541 0 01111111 1224555554443 3444444 8889888643
No 134
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=20.30 E-value=1.2e+03 Score=25.95 Aligned_cols=157 Identities=17% Similarity=0.192 Sum_probs=75.3
Q ss_pred cccccccCCCCccccCCCCcEEEEcCCCCCCccCCCCCCCccccccccccCCceeecccCCCCeEEEEecCCeEEEE--E
Q 006205 15 SAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALV--N 92 (657)
Q Consensus 15 ~~~~~~s~G~~~~~l~~~G~Vy~WG~n~~~G~LG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~I~~Ia~G~~h~~~l--t 92 (657)
.+..++..|..-.+-+..|++|.|=-+. |.|=.- .. .--..|..+...++-..++ .
T Consensus 85 ~al~s~n~G~~l~ag~i~g~lYlWelss--G~LL~v-----------~~---------aHYQ~ITcL~fs~dgs~iiTgs 142 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGTISGNLYLWELSS--GILLNV-----------LS---------AHYQSITCLKFSDDGSHIITGS 142 (476)
T ss_pred eeeecCCCceEEEeecccCcEEEEEecc--ccHHHH-----------HH---------hhccceeEEEEeCCCcEEEecC
Confidence 3445555577767788899999998877 332210 00 1112344454444444444 5
Q ss_pred cCCcEEEEeCCCCCCcCCCCCCCcccceEeccCC--CCcEEEEEeCCceEEEEEcCCcEEEEcCCCCCCCccCCCCCcce
Q 006205 93 KQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALS--NMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSH 170 (657)
Q Consensus 93 ~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~--~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~~~~~~~ 170 (657)
+||.|+.|=--+-- ...+...|.++..+. ...|.++.+|..- .+.+||+-+...- -.+= +-..-
T Consensus 143 kDg~V~vW~l~~lv-----~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg-----~~~rl~TaS~D~t--~k~w--dlS~g 208 (476)
T KOG0646|consen 143 KDGAVLVWLLTDLV-----SADNDHSVKPLHIFSDHTLSITDLQIGSGG-----TNARLYTASEDRT--IKLW--DLSLG 208 (476)
T ss_pred CCccEEEEEEEeec-----ccccCCCccceeeeccCcceeEEEEecCCC-----ccceEEEecCCce--EEEE--Eeccc
Confidence 67889888642210 011111344444333 3467777776653 2344444432200 0000 00000
Q ss_pred eeeeeecCCCCCceEEEEeeCCceEEEEecCCcEEEEe
Q 006205 171 WVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFG 208 (657)
Q Consensus 171 ~~P~~v~~~l~~~~I~~Ia~G~~hs~~Lt~~G~vy~wG 208 (657)
..-..+..| .....+.+.-+..+.++=+++|++|..-
T Consensus 209 ~LLlti~fp-~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 209 VLLLTITFP-SSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred eeeEEEecC-CcceeEEEcccccEEEecCCcceEEeee
Confidence 111112211 1123344445667777778899888653
No 135
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=20.09 E-value=51 Score=37.78 Aligned_cols=67 Identities=16% Similarity=0.357 Sum_probs=45.6
Q ss_pred cCcccCCCCCCCCC-cccccccccccccceeeccCCCccccc-c--ccCCCCCCCeeeCcchHHhhhcccc
Q 006205 427 VDQSMCSGCRLPFN-NFKRKRHNCYNCGLVFCHSCSSKKSLK-A--SMAPNPNKPYRVCDNCFNKLRKTFD 493 (657)
Q Consensus 427 ~d~~~C~~C~~~F~-~f~rkrh~C~~cG~~~C~~Cs~~~~~~-~--~~~~~~~~~~RvC~~C~~~~~~~~~ 493 (657)
...-.|.+|++.++ .+..+-.-|..+|+-||..|-.+.... | .+-.=+-+++.||+.=+..|-...+
T Consensus 338 aQ~~~CAgC~~~i~~~~~~~~R~C~y~G~y~C~~Ch~~~~svIPARVl~~WDf~~y~Vs~~a~~~L~~ir~ 408 (580)
T KOG1829|consen 338 AQNFRCAGCGHTIGPDLEQRPRLCRYLGKYFCDCCHQNDKSVIPARVLHNWDFTKYPVSNFAKQFLDEIRE 408 (580)
T ss_pred ccCceecccCCCcccccccchhHhhhhhhhhCchhcccCcccccccceecccCcccccchhHHHHHHHHhc
Confidence 35568999999998 444555679999999999995554322 3 2222234688899877776655444
Done!