Query 006205
Match_columns 657
No_of_seqs 581 out of 2635
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 18:49:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006205.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006205hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kci_A Probable E3 ubiquitin-p 100.0 1.7E-70 5.8E-75 596.4 36.2 371 25-421 12-387 (389)
2 4d9s_A UVB-resistance protein 100.0 6E-68 2.1E-72 579.5 39.3 361 15-401 16-379 (406)
3 3mvd_K Regulator of chromosome 100.0 8E-66 2.7E-70 565.6 44.7 370 18-421 27-418 (423)
4 1a12_A RCC1, regulator of chro 100.0 5.3E-66 1.8E-70 565.4 43.0 365 25-422 19-410 (413)
5 3of7_A Regulator of chromosome 100.0 1.4E-65 4.8E-70 571.6 40.9 369 27-421 23-450 (473)
6 4d9s_A UVB-resistance protein 100.0 6.2E-63 2.1E-67 539.9 41.9 332 75-422 15-348 (406)
7 3kci_A Probable E3 ubiquitin-p 100.0 1.5E-59 5.2E-64 510.3 31.2 328 80-422 5-336 (389)
8 3mvd_K Regulator of chromosome 100.0 5.7E-57 1.9E-61 495.2 31.8 323 76-422 24-365 (423)
9 1a12_A RCC1, regulator of chro 100.0 3.1E-56 1E-60 488.0 33.7 335 10-372 54-412 (413)
10 3of7_A Regulator of chromosome 100.0 8E-56 2.7E-60 493.0 27.1 326 77-422 11-396 (473)
11 3qhy_B Beta-lactamase inhibito 100.0 3.6E-51 1.2E-55 424.9 30.1 271 33-421 2-272 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 1.9E-45 6.6E-50 381.8 26.0 252 15-373 24-276 (282)
13 1x4u_A Zinc finger, FYVE domai 99.6 3.5E-16 1.2E-20 130.8 5.7 73 420-493 5-81 (84)
14 2yw8_A RUN and FYVE domain-con 99.6 1.6E-15 5.4E-20 126.2 4.0 74 416-494 6-79 (82)
15 1z2q_A LM5-1; membrane protein 99.5 2.2E-15 7.7E-20 125.8 2.7 70 420-492 12-81 (84)
16 1wfk_A Zinc finger, FYVE domai 99.5 2.3E-14 7.9E-19 120.4 5.2 66 427-496 7-72 (88)
17 3t7l_A Zinc finger FYVE domain 99.5 1.6E-14 5.6E-19 122.1 3.1 69 420-493 11-79 (90)
18 1joc_A EEA1, early endosomal a 99.5 2.7E-14 9.2E-19 128.3 4.2 65 420-489 60-124 (125)
19 1vfy_A Phosphatidylinositol-3- 99.4 2.8E-14 9.6E-19 115.9 2.4 66 420-491 5-70 (73)
20 3zyq_A Hepatocyte growth facto 99.3 6.1E-13 2.1E-17 132.3 2.6 68 420-493 158-225 (226)
21 1dvp_A HRS, hepatocyte growth 99.3 1.3E-12 4.4E-17 129.8 2.6 65 420-490 155-219 (220)
22 1y02_A CARP2, FYVE-ring finger 99.2 2.5E-12 8.5E-17 113.6 2.5 58 423-491 13-70 (120)
23 3mpx_A FYVE, rhogef and PH dom 99.0 2.6E-11 8.8E-16 132.8 0.0 68 420-491 366-433 (434)
24 1p22_A F-BOX/WD-repeat protein 95.4 3.2 0.00011 43.7 30.2 241 76-379 174-414 (435)
25 2zwa_A Leucine carboxyl methyl 95.0 2.6 9.1E-05 48.1 23.4 63 137-209 441-508 (695)
26 2vrw_B P95VAV, VAV1, proto-onc 94.5 0.014 4.6E-07 62.8 2.5 43 422-464 350-392 (406)
27 4gbf_A Phikz131; 7-bladed beta 93.8 0.094 3.2E-06 51.3 6.5 68 77-157 310-377 (400)
28 1k3i_A Galactose oxidase precu 93.0 6.9 0.00024 44.1 21.7 73 308-382 457-534 (656)
29 4gbf_A Phikz131; 7-bladed beta 92.9 0.15 5.3E-06 49.8 6.4 71 184-279 310-380 (400)
30 2zwa_A Leucine carboxyl methyl 92.2 7.6 0.00026 44.2 20.7 18 192-209 441-459 (695)
31 2ovr_B FBW7, F-BOX/WD repeat p 91.3 16 0.00054 38.2 33.1 227 77-378 161-390 (445)
32 1zbd_B Rabphilin-3A; G protein 89.6 0.2 7E-06 44.8 3.3 56 427-488 53-108 (134)
33 1k3i_A Galactose oxidase precu 89.0 6.7 0.00023 44.2 16.3 18 85-102 288-305 (656)
34 1p22_A F-BOX/WD-repeat protein 87.9 28 0.00095 36.2 32.2 229 77-377 135-363 (435)
35 2zet_C Melanophilin; complex, 87.2 0.28 9.5E-06 44.9 2.5 52 428-488 67-118 (153)
36 2uvk_A YJHT; unknown function, 85.7 28 0.00095 35.2 17.5 17 192-209 110-126 (357)
37 2ovr_B FBW7, F-BOX/WD repeat p 85.4 37 0.0013 35.2 31.9 225 78-377 122-346 (445)
38 3sfz_A APAF-1, apoptotic pepti 84.5 66 0.0023 38.5 22.7 58 85-155 1015-1073(1249)
39 4aez_A CDC20, WD repeat-contai 81.6 50 0.0017 33.8 26.3 108 77-210 136-247 (401)
40 1gxr_A ESG1, transducin-like e 80.6 44 0.0015 32.4 32.7 273 25-378 13-295 (337)
41 3odt_A Protein DOA1; ubiquitin 79.8 44 0.0015 32.1 28.8 186 76-326 105-295 (313)
42 3no0_A DNA gyrase subunit A; D 76.2 64 0.0022 31.9 20.4 231 87-379 3-246 (276)
43 3zwl_B Eukaryotic translation 71.3 80 0.0028 30.9 26.9 161 77-273 76-247 (369)
44 4asc_A Kelch repeat and BTB do 71.1 72 0.0024 31.5 14.7 16 193-209 91-106 (315)
45 2uvk_A YJHT; unknown function, 70.6 44 0.0015 33.7 13.2 18 137-155 110-127 (357)
46 3mmy_A MRNA export factor; mRN 69.4 88 0.003 30.6 21.9 194 127-378 39-246 (368)
47 4aez_A CDC20, WD repeat-contai 67.9 1.1E+02 0.0037 31.1 28.5 228 78-377 96-334 (401)
48 3no0_A DNA gyrase subunit A; D 66.9 1E+02 0.0035 30.4 21.6 215 77-333 25-252 (276)
49 3ky9_A Proto-oncogene VAV; cal 66.5 2.4 8.2E-05 47.4 2.5 39 425-464 525-564 (587)
50 3ii7_A Kelch-like protein 7; p 65.3 94 0.0032 30.3 14.1 17 138-155 48-64 (306)
51 3mmy_A MRNA export factor; mRN 63.0 1.2E+02 0.004 29.6 23.1 108 75-208 39-157 (368)
52 1wfh_A Zinc finger (AN1-like) 61.7 5.3 0.00018 30.6 2.8 30 427-460 13-42 (64)
53 4asc_A Kelch repeat and BTB do 61.5 1.3E+02 0.0043 29.6 16.8 17 86-102 37-53 (315)
54 2a20_A Regulating synaptic mem 60.7 6.1 0.00021 29.5 2.8 54 426-487 6-60 (62)
55 2xn4_A Kelch-like protein 2; s 60.1 1.3E+02 0.0044 29.2 16.3 17 86-103 54-70 (302)
56 1zgk_A Kelch-like ECH-associat 58.6 1.4E+02 0.0048 29.2 18.0 17 25-41 17-33 (308)
57 1wff_A Riken cDNA 2810002D23 p 58.4 16 0.00053 29.6 5.2 30 427-459 23-52 (85)
58 2vpj_A Kelch-like protein 12; 57.8 1.4E+02 0.0047 28.9 19.4 18 137-155 104-121 (301)
59 3m48_A General control protein 57.5 7.4 0.00025 25.4 2.4 22 632-653 9-30 (33)
60 1gxr_A ESG1, transducin-like e 57.1 1.4E+02 0.0047 28.6 29.9 225 77-375 99-333 (337)
61 2csz_A Synaptotagmin-like prot 56.7 5.9 0.0002 31.4 2.3 51 427-487 23-73 (76)
62 3mkq_A Coatomer beta'-subunit; 56.5 2.5E+02 0.0084 31.3 24.6 230 77-378 15-258 (814)
63 1wfl_A Zinc finger protein 216 56.2 5.6 0.00019 31.3 2.1 28 429-460 25-52 (74)
64 1t2k_D Cyclic-AMP-dependent tr 56.0 6.6 0.00023 29.7 2.5 25 632-656 31-55 (61)
65 2aq5_A Coronin-1A; WD40 repeat 55.9 1.7E+02 0.0059 29.4 30.3 115 77-209 83-205 (402)
66 2woz_A Kelch repeat and BTB do 55.0 1.6E+02 0.0053 28.9 13.7 16 309-325 151-166 (318)
67 3k26_A Polycomb protein EED; W 54.7 1.6E+02 0.0054 28.6 26.9 111 76-209 19-145 (366)
68 3ii7_A Kelch-like protein 7; p 54.1 1.6E+02 0.0055 28.5 20.3 18 86-104 48-65 (306)
69 2woz_A Kelch repeat and BTB do 53.7 1.3E+02 0.0044 29.5 12.8 17 86-102 48-64 (318)
70 1jnm_A Proto-oncogene C-JUN; B 52.5 9.1 0.00031 29.0 2.8 25 632-656 31-55 (62)
71 3uc1_A DNA gyrase subunit A; D 51.9 2E+02 0.007 29.0 21.6 216 132-378 48-278 (327)
72 2aq5_A Coronin-1A; WD40 repeat 51.7 2E+02 0.0069 28.9 26.9 115 79-209 38-161 (402)
73 3ra3_B P2F; coiled coil domain 51.7 13 0.00043 22.4 2.6 24 633-656 3-26 (28)
74 3odt_A Protein DOA1; ubiquitin 51.7 1.6E+02 0.0055 27.8 31.4 228 77-378 61-295 (313)
75 2vpj_A Kelch-like protein 12; 51.1 1.8E+02 0.0061 28.1 20.6 17 138-155 55-71 (301)
76 1wg2_A Zinc finger (AN1-like) 50.3 11 0.00037 28.9 2.8 29 428-460 14-42 (64)
77 1p9i_A Cortexillin I/GCN4 hybr 49.8 9.8 0.00034 23.4 2.0 23 634-656 3-25 (31)
78 2wt7_A Proto-oncogene protein 49.6 9.7 0.00033 29.0 2.5 25 632-656 32-56 (63)
79 1yfq_A Cell cycle arrest prote 48.1 2E+02 0.0067 27.7 25.0 231 14-323 14-278 (342)
80 1kd8_B GABH BLL, GCN4 acid bas 47.9 13 0.00044 24.7 2.4 22 632-653 10-31 (36)
81 1r5m_A SIR4-interacting protei 46.9 2.3E+02 0.0077 28.1 19.4 106 77-209 249-359 (425)
82 3v7d_B Cell division control p 46.9 2.5E+02 0.0086 28.7 33.4 236 77-376 205-460 (464)
83 3k26_A Polycomb protein EED; W 46.7 2.1E+02 0.0072 27.7 28.9 109 77-210 71-191 (366)
84 2oxj_A Hybrid alpha/beta pepti 45.8 15 0.0005 24.1 2.4 22 632-653 10-31 (34)
85 2yy0_A C-MYC-binding protein; 44.5 14 0.00049 27.1 2.6 27 630-656 19-45 (53)
86 1z60_A TFIIH basal transcripti 44.4 3.3 0.00011 31.2 -0.8 29 430-460 16-44 (59)
87 2xyi_A Probable histone-bindin 44.3 2.8E+02 0.0094 28.4 24.0 260 77-378 130-409 (430)
88 1gu4_A CAAT/enhancer binding p 44.2 13 0.00044 29.7 2.5 25 632-656 45-69 (78)
89 1r5m_A SIR4-interacting protei 43.4 2.6E+02 0.0087 27.7 27.8 199 77-326 151-360 (425)
90 1hjb_A Ccaat/enhancer binding 42.5 14 0.00047 30.1 2.5 25 632-656 45-69 (87)
91 2fiy_A Protein FDHE homolog; F 42.4 9.6 0.00033 38.8 1.9 75 409-493 187-268 (309)
92 3no2_A Uncharacterized protein 41.8 2.5E+02 0.0084 27.1 23.6 84 293-384 170-266 (276)
93 3ra3_A P1C; coiled coil domain 41.6 23 0.00079 21.3 2.7 25 632-656 2-26 (28)
94 1a93_B MAX protein, coiled coi 40.6 11 0.00039 24.8 1.4 18 632-649 16-33 (34)
95 1ci6_A Transcription factor AT 40.0 17 0.00057 27.7 2.5 25 632-656 32-56 (63)
96 1suu_A DNA gyrase subunit A; t 40.0 3E+02 0.01 27.5 23.5 222 81-330 54-286 (312)
97 2ecl_A Ring-box protein 2; RNF 39.8 16 0.00054 29.0 2.5 59 422-490 8-76 (81)
98 2hy6_A General control protein 38.7 22 0.00075 23.3 2.4 22 632-653 10-31 (34)
99 3c3g_A Alpha/beta peptide with 38.5 22 0.00076 23.1 2.4 22 632-653 9-30 (33)
100 1wfp_A Zinc finger (AN1-like) 38.5 19 0.00066 28.2 2.7 29 428-460 24-52 (74)
101 1gd2_E Transcription factor PA 38.0 14 0.00048 28.8 1.8 25 632-656 38-62 (70)
102 3zwh_Q Myosin-9; Ca-binding pr 37.7 20 0.00069 25.3 2.4 23 632-654 8-30 (45)
103 1q7f_A NHL, brain tumor CG1071 37.6 2.7E+02 0.0091 26.3 17.2 15 27-41 35-49 (286)
104 1uo4_A General control protein 37.2 24 0.00081 23.1 2.4 21 632-652 10-30 (34)
105 2dgc_A Protein (GCN4); basic d 37.1 18 0.00062 27.5 2.3 23 632-654 39-61 (63)
106 1pgu_A Actin interacting prote 36.9 4E+02 0.014 28.1 28.9 56 84-153 308-363 (615)
107 4a11_B DNA excision repair pro 36.4 3.2E+02 0.011 26.8 29.3 249 76-379 100-365 (408)
108 3c3f_A Alpha/beta peptide with 36.2 25 0.00087 22.9 2.4 22 632-653 10-31 (34)
109 1q7f_A NHL, brain tumor CG1071 36.0 2.8E+02 0.0096 26.1 22.5 16 310-325 210-225 (286)
110 3zwl_B Eukaryotic translation 35.3 3.1E+02 0.011 26.4 22.7 68 76-155 33-104 (369)
111 3vl1_A 26S proteasome regulato 35.0 3.5E+02 0.012 26.9 30.8 99 84-209 108-210 (420)
112 1zvt_A Topoisomerase IV subuni 34.3 2.4E+02 0.0083 27.3 10.8 125 81-217 40-169 (256)
113 2pm9_A Protein WEB1, protein t 34.0 3.6E+02 0.012 26.7 25.0 71 77-155 69-144 (416)
114 3v7d_B Cell division control p 32.9 4.1E+02 0.014 27.0 32.9 237 78-379 125-381 (464)
115 1sq9_A Antiviral protein SKI8; 30.0 4.1E+02 0.014 26.1 26.6 121 76-210 17-156 (397)
116 2wq1_A General control protein 29.7 38 0.0013 22.0 2.4 22 632-653 9-30 (33)
117 1kd8_A GABH AIV, GCN4 acid bas 29.4 43 0.0015 22.2 2.7 22 632-653 10-31 (36)
118 1pgu_A Actin interacting prote 29.3 5.2E+02 0.018 27.1 28.6 221 77-376 162-399 (615)
119 4gga_A P55CDC, cell division c 29.3 4.5E+02 0.016 26.4 32.4 109 77-209 149-259 (420)
120 3jro_A Fusion protein of prote 29.3 6.3E+02 0.022 28.1 26.8 109 77-210 11-131 (753)
121 4g56_B MGC81050 protein; prote 28.0 4.5E+02 0.015 26.0 28.2 186 77-326 141-342 (357)
122 1bor_A Transcription factor PM 27.0 33 0.0011 24.8 2.2 44 427-488 4-47 (56)
123 2jee_A YIIU; FTSZ, septum, coi 26.6 37 0.0013 27.1 2.5 20 632-651 29-48 (81)
124 3no2_A Uncharacterized protein 26.4 4.3E+02 0.015 25.3 20.4 29 125-153 85-115 (276)
125 2ecw_A Tripartite motif-contai 26.1 16 0.00054 28.7 0.3 54 427-489 17-70 (85)
126 3vgz_A Uncharacterized protein 26.0 4.4E+02 0.015 25.2 22.9 16 138-153 91-107 (353)
127 1xip_A Nucleoporin NUP159; bet 25.8 5.6E+02 0.019 26.4 13.0 113 25-155 41-154 (388)
128 1suu_A DNA gyrase subunit A; t 25.7 5E+02 0.017 25.7 24.9 261 86-379 9-283 (312)
129 2ecm_A Ring finger and CHY zin 25.7 41 0.0014 23.8 2.5 36 428-464 4-39 (55)
130 2bni_A General control protein 25.7 49 0.0017 21.7 2.4 21 632-652 10-30 (34)
131 1twf_L ABC10-alpha, DNA-direct 25.0 24 0.00083 27.4 1.1 26 429-454 28-53 (70)
132 1iym_A EL5; ring-H2 finger, ub 24.9 39 0.0013 23.9 2.3 37 427-464 3-39 (55)
133 1xip_A Nucleoporin NUP159; bet 24.6 1.7E+02 0.0059 30.4 8.1 73 118-208 80-152 (388)
134 3jrp_A Fusion protein of prote 24.4 4.8E+02 0.016 25.1 31.1 241 77-378 13-286 (379)
135 3m91_A Proteasome-associated A 24.4 51 0.0017 23.9 2.7 14 643-656 36-49 (51)
136 1wt6_A Myotonin-protein kinase 24.2 47 0.0016 26.4 2.7 24 633-656 48-71 (81)
137 1x4w_A Hypothetical protein FL 23.9 25 0.00084 27.1 1.0 33 427-460 13-45 (67)
138 2yy0_A C-MYC-binding protein; 23.7 57 0.0019 23.8 2.9 26 630-655 26-51 (53)
139 2w6a_A ARF GTPase-activating p 23.4 17 0.00059 27.0 0.0 29 628-656 25-53 (63)
140 1wp5_A Topoisomerase IV; broke 23.1 5.7E+02 0.02 25.5 23.5 233 79-336 44-286 (323)
141 2xyi_A Probable histone-bindin 22.6 6.1E+02 0.021 25.6 24.2 200 87-325 196-408 (430)
142 1zi0_A DNA gyrase subunit A; b 22.4 5.7E+02 0.02 25.2 24.4 216 132-379 48-277 (307)
143 2lo3_A SAGA-associated factor 21.8 36 0.0012 23.5 1.4 13 475-487 14-26 (44)
144 4a11_B DNA excision repair pro 20.9 5.8E+02 0.02 24.8 29.4 211 75-327 43-276 (408)
145 4g56_B MGC81050 protein; prote 20.8 6.1E+02 0.021 24.9 31.4 233 77-379 96-343 (357)
146 2ysl_A Tripartite motif-contai 20.7 22 0.00075 27.1 0.1 51 427-489 18-68 (73)
147 3gre_A Serine/threonine-protei 20.6 6.4E+02 0.022 25.1 19.5 72 76-154 64-140 (437)
148 2ecn_A Ring finger protein 141 20.3 28 0.00096 26.3 0.7 50 427-492 13-62 (70)
149 2egp_A Tripartite motif-contai 20.2 23 0.00079 27.4 0.1 55 427-489 10-64 (79)
No 1
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.7e-70 Score=596.39 Aligned_cols=371 Identities=36% Similarity=0.635 Sum_probs=336.3
Q ss_pred CccccCCCCcEEEEcCCCCCCccCCCCCCCccccccccccCCceeecccCCCCeEEEEecCCeEEEEEcCCcEEEEeCCC
Q 006205 25 GHDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEES 104 (657)
Q Consensus 25 ~~~~l~~~G~Vy~WG~n~~~G~LG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~I~~Ia~G~~h~~~lt~~G~Vy~wG~n~ 104 (657)
.+.+++++|+||+||.|. +||||.++ ..+...|.+++.+...+|++|+||..|+++|+++|+||+||.|.
T Consensus 12 ~~~~l~~~G~v~~wG~n~-~GqLG~~~---------~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~ 81 (389)
T 3kci_A 12 ENLYFQGSGTIYGWGHNH-RGQLGGIE---------GAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGA 81 (389)
T ss_dssp ---------CEEEEEECT-TSTTSSCS---------CSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCG
T ss_pred cceeECCCCeEEEeeCCC-CccCCCCc---------CccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCC
Confidence 557899999999999999 99999876 35667899988888889999999999999999999999999999
Q ss_pred CCCcCCCCCCCcccceEeccCCCCcE--EEEEeCCceEEEEEcCCcEEEEcCCCCCCCccCCCCCcceeeeeeecCCCCC
Q 006205 105 GGRLGHGVDSDVLHPKLIDALSNMNI--ELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEG 182 (657)
Q Consensus 105 ~GqLG~g~~~~~~~P~~v~~l~~~~I--~~Va~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~~~~~~~~~P~~v~~~l~~ 182 (657)
+||||.+.......|.++..+.+..+ ++|+||.+|++||+++|+||+||.| .+||||.+.......|.++.. +.+
T Consensus 82 ~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n--~~GqLG~g~~~~~~~p~~v~~-l~~ 158 (389)
T 3kci_A 82 GGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEA--EDGKLGHGNRSPCDRPRVIES-LRG 158 (389)
T ss_dssp GGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECC--GGGTTCSSSCCCEEEEEECGG-GTT
T ss_pred CCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCC--CCCcCCCCCCccCcCCeEecc-cCC
Confidence 99999999888899999998876644 7888999999999999999999999 679999999988899999876 567
Q ss_pred ceEEEEeeCCceEEEEecCCcEEEEecCCCCccCCCCCcccccceeeeccCCCeEEEEEeCC--CeeEEEEEeeecCCCc
Q 006205 183 IHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGV--WHTAAVVEVMVGNSSS 260 (657)
Q Consensus 183 ~~I~~Ia~G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Ia~G~--~hs~al~e~~~~~s~~ 260 (657)
.+|++|+||.+|+++|+++|+||+||.|.+||||+++......|++++.+.+.+|++|+||. .|+++|+
T Consensus 159 ~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~--------- 229 (389)
T 3kci_A 159 IEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLT--------- 229 (389)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEE---------
T ss_pred CeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEc---------
Confidence 78999999999999999999999999999999999999989999999999999999999995 8999998
Q ss_pred cccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeecCCCCeEEEEccCcEEEEEecCCcEEEEeCCCCCCCCCCCCCC-C
Q 006205 261 SNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADG-K 339 (657)
Q Consensus 261 ~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~~~~i~~I~~G~~~t~aLt~~G~Vy~wG~n~~GqLG~~~~~~-~ 339 (657)
.+|+||+||.|.+||||.+.......|.++..+.+.+|++|+||.+|++||+++|+||+||.|.+||||.+.... .
T Consensus 230 ---~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~ 306 (389)
T 3kci_A 230 ---DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVR 306 (389)
T ss_dssp ---TTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEE
T ss_pred ---cCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCcccc
Confidence 699999999999999999999999999999998888999999999999999999999999999999999987554 3
Q ss_pred cceeeccccCCCCEEEEEEccccccccccCCeEEEEecCCCCCCCCCCCCCCcccEEecccCCCcEEEEEcCCCceeeee
Q 006205 340 LPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAIC 419 (657)
Q Consensus 340 ~p~~v~~~l~~~~V~~Ia~G~~ht~aLt~~G~vy~WG~n~~GqLG~g~~~~~~~P~~V~~l~~~~v~~Ia~G~~hT~al~ 419 (657)
.|..+.. +.+.+|++|+||.+|+++|+++|+||+||.|.+||||+|+.+++..|++|+.+.+++|.+|+||.+||+||+
T Consensus 307 ~P~~v~~-l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~v~~va~G~~ht~al~ 385 (389)
T 3kci_A 307 RPRQVQG-LQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLAWS 385 (389)
T ss_dssp EEEECGG-GTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCCCEEEEETTEEEEEC
T ss_pred CCeEecc-CCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEecccCCCCEEEEEecCCcEEEEe
Confidence 5777764 667789999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ee
Q 006205 420 LH 421 (657)
Q Consensus 420 ~~ 421 (657)
..
T Consensus 386 ~~ 387 (389)
T 3kci_A 386 TS 387 (389)
T ss_dssp C-
T ss_pred cC
Confidence 54
No 2
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=6e-68 Score=579.55 Aligned_cols=361 Identities=37% Similarity=0.646 Sum_probs=333.4
Q ss_pred cccccccCCCCc-cccCCCCcEEEEcCCCCCCccCCCCCCCccccccccccCCceeecccCCCCeEEEEecCCeEEEEEc
Q 006205 15 SAVSSSSQGSGH-DDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVNK 93 (657)
Q Consensus 15 ~~~~~~s~G~~~-~~l~~~G~Vy~WG~n~~~G~LG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~I~~Ia~G~~h~~~lt~ 93 (657)
..+..++.|..| .+|+++|+||+||.|. +||||.++ ..+...|.++..+...+|++|+||..|+++|++
T Consensus 16 ~~v~~ia~G~~hs~al~~~g~v~~wG~n~-~GqLG~g~---------~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~ 85 (406)
T 4d9s_A 16 RKVLIISAGASHSVALLSGDIVCSWGRGE-DGQLGHGD---------AEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQ 85 (406)
T ss_dssp CCEEEEEECSSEEEEEETTTEEEEEECCT-TSTTCSSS---------CCCEEEEEECGGGTTSCEEEEEECSSEEEEEET
T ss_pred cceEEEecCCCeEEEEEeCCEEEEEeCCC-CCCCCCCC---------cccCcCCEEecccCCCCEEEEEeCcceEEEEEC
Confidence 345667778866 7999999999999999 99999997 245578888888878899999999999999999
Q ss_pred CC-cEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeCCceEEEEEcCCcEEEEcCCCCCCCccCCCCCcceee
Q 006205 94 QG-EVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWV 172 (657)
Q Consensus 94 ~G-~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~~~~~~~~~ 172 (657)
+| +||+||.|.+||||++...+...|.++..+.+.+|++|+||.+|++||+++|+||+||.| ..||||.+.......
T Consensus 86 ~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n--~~GqLG~g~~~~~~~ 163 (406)
T 4d9s_A 86 SGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRN--QNGQLGLGDTEDSLV 163 (406)
T ss_dssp TTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECC--TTSTTCSSSCCCEEE
T ss_pred CCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCC--CCccCCCCCCCCccc
Confidence 86 999999999999999999999999999999999999999999999999999999999999 679999999999999
Q ss_pred eeeecCCCCCceEEEEeeCCceEEEEecCCcEEEEecCCCCccCCCCCcccccceeeeccCCCeEEEEEeCCCeeEEEEE
Q 006205 173 PKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVE 252 (657)
Q Consensus 173 P~~v~~~l~~~~I~~Ia~G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Ia~G~~hs~al~e 252 (657)
|.++.. +.+.+|++|+||.+|+++|+++|+||+||.|.+||||+++......|.++..+.+.+|++|+||.+|+++|+
T Consensus 164 p~~v~~-~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~- 241 (406)
T 4d9s_A 164 PQKIQA-FEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVS- 241 (406)
T ss_dssp EEECGG-GTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEE-
T ss_pred ceEecc-cCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEc-
Confidence 999875 567789999999999999999999999999999999999998889999999888889999999999999999
Q ss_pred eeecCCCccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeecCCCCeEEEEccCcEEEEEecCCcEEEEeCCCCCCCC
Q 006205 253 VMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVYTMGSPVYGQLG 332 (657)
Q Consensus 253 ~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~~~~i~~I~~G~~~t~aLt~~G~Vy~wG~n~~GqLG 332 (657)
.+|+||+||.|.+||||+++......|+++..+.+.+|++|+||.+|++||+++|+||+||.|.+||||
T Consensus 242 -----------~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG 310 (406)
T 4d9s_A 242 -----------YSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVG 310 (406)
T ss_dssp -----------TTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTC
T ss_pred -----------CCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCC
Confidence 699999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred CCCCCCC-cceeeccccCCCCEEEEEEccccccccccCCeEEEEecCCCCCCCCCCCCCCcccEEecccC
Q 006205 333 NPQADGK-LPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEALK 401 (657)
Q Consensus 333 ~~~~~~~-~p~~v~~~l~~~~V~~Ia~G~~ht~aLt~~G~vy~WG~n~~GqLG~g~~~~~~~P~~V~~l~ 401 (657)
.+..... .|..+.. +...+|++|+||.+|++||+++|+||+||.|.+||||+|+..++..|++|+.+.
T Consensus 311 ~g~~~~~~~p~~v~~-~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~ 379 (406)
T 4d9s_A 311 VGNNLDQCSPVQVRF-PDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 379 (406)
T ss_dssp SSSSSCEEEEEEECC-GGGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGC
T ss_pred CCCCCCCccCEEEec-cCCCcEEEEEeCCCeEEEEeCCCCEEEecCCCCCccCCCCCCCCcCCEEeeeec
Confidence 9875543 5666653 455789999999999999999999999999999999999999999999998765
No 3
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=8e-66 Score=565.58 Aligned_cols=370 Identities=25% Similarity=0.406 Sum_probs=322.0
Q ss_pred ccccCCCCc-cccCCCCcEEEEcCCCCCCccCCCCCCCccccccccccCCceeecccCCCCeEEEEecCCeEEEEEcCCc
Q 006205 18 SSSSQGSGH-DDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVNKQGE 96 (657)
Q Consensus 18 ~~~s~G~~~-~~l~~~G~Vy~WG~n~~~G~LG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~I~~Ia~G~~h~~~lt~~G~ 96 (657)
..++.|..| .+++.+|+||+||.|. +||||.|... .+...|.+++.+. +|++|+||..|+++|+++|+
T Consensus 27 ~~ia~g~~~~~~l~~~G~v~~wG~n~-~GqLG~g~~~--------~~~~~p~~v~~l~--~v~~va~G~~h~~~l~~~G~ 95 (423)
T 3mvd_K 27 ARIAFHLELPKRRTVLGNVLVCGNGD-VGQLGLGEDI--------LERKRLSPVAGIP--DAVDISAGGMHNLVLTKSGD 95 (423)
T ss_dssp --CCCCCCCCCCCCCCEEEEEEEECT-TSTTCSCSSC--------CEEEEEEECCSCS--SEEEEEECSSEEEEEETTSC
T ss_pred eEEecCCccceeecCCCcEEEEeCCC-CCCCCCCCCC--------ccCcCCeEccCCC--CceEEeeCCCeEEEEeCCCe
Confidence 345667755 8999999999999999 9999999622 3455677777654 69999999999999999999
Q ss_pred EEEEeCCCCCCcCCCCCCC--cccceEeccCCCCcEEEEEeCCceEEEEEcCCcEEEEcC--CCCCCCccCCCCCcceee
Q 006205 97 VFSWGEESGGRLGHGVDSD--VLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGD--GTYNFGLLGHGNEVSHWV 172 (657)
Q Consensus 97 Vy~wG~n~~GqLG~g~~~~--~~~P~~v~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~--n~~~~GqLG~~~~~~~~~ 172 (657)
||+||.|.+||||++...+ ...|.+|... .+|++|+||.+|++||+++|+||+||. | .+||||.+.......
T Consensus 96 v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~--~~i~~va~G~~hs~al~~~G~v~~wG~~~n--~~GqlG~~~~~~~~~ 171 (423)
T 3mvd_K 96 IYSFGCNDEGALGRDTSEDGSESKPDLIDLP--GKALCISAGDSHSACLLEDGRVFAWGSFRD--SHGNMGLTIDGNKRT 171 (423)
T ss_dssp EEEEECCSSSTTCSCCCSTTSSSSCEECCCS--SCEEEEEECSSEEEEEETTSCEEEEECEEC--SSSEEESBTTBCEEE
T ss_pred EEEeECCCCcCCCCCCcCCccccCCeEEcCC--CCEEEEEcCcCeEEEEeCCCeEEEEeCCCC--CCCCcCcCCCCCCce
Confidence 9999999999999997664 6778888753 389999999999999999999999998 7 679999998888888
Q ss_pred eeeecCCCCCceEEEEeeCCceEEEEecCCcEEEEecCCCCccCCCCC-----------cccccceeeeccCCCeEEEEE
Q 006205 173 PKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDR-----------KSVSIPREVESLKGLRTVRAA 241 (657)
Q Consensus 173 P~~v~~~l~~~~I~~Ia~G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~-----------~~~~~P~~v~~l~~~~I~~Ia 241 (657)
|.++ +.+.+|++|+||.+|+++|+++|+||+||.|.+||||++.. .....|.++..+...+|++|+
T Consensus 172 p~~~---~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~ 248 (423)
T 3mvd_K 172 PIDL---MEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIW 248 (423)
T ss_dssp EEES---STTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEE
T ss_pred eeEe---cCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEE
Confidence 8776 34678999999999999999999999999999999999754 245688899887788999999
Q ss_pred eCCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCC--ceeecEEEeecCCCCeEEEEccCcEEEEEecCCc
Q 006205 242 CGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKE--AKLVPTCVAALVEPNFCRVACGHSLTVALTTSGH 319 (657)
Q Consensus 242 ~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~--~~~~P~~v~~l~~~~i~~I~~G~~~t~aLt~~G~ 319 (657)
||.+|++++.. .+|+||+||.|.+||||.+... ....|..+. ..+|++|+||.+|+++|+++|+
T Consensus 249 ~g~~~~~~~~~-----------~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~---~~~v~~ia~G~~ht~alt~~G~ 314 (423)
T 3mvd_K 249 ATNYCTFMRES-----------QTQVIWATGLNNFKQLAHETKGKEFALTPIKTE---LKDIRHIAGGQHHTVILTTDLK 314 (423)
T ss_dssp EETTEEEEEET-----------TTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC---CCSEEEEEECSSEEEEEETTCC
T ss_pred ECCcEEEEEEC-----------CCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC---CCCeEEEEcccCeEEEEeCCCc
Confidence 99999999952 6999999999999999996543 345566554 3689999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCCCCC--cceeeccccCCCCEEEEEEccccccccccCCeEEEEecCCCCCCCCCCCCCCcccEEe
Q 006205 320 VYTMGSPVYGQLGNPQADGK--LPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLV 397 (657)
Q Consensus 320 Vy~wG~n~~GqLG~~~~~~~--~p~~v~~~l~~~~V~~Ia~G~~ht~aLt~~G~vy~WG~n~~GqLG~g~~~~~~~P~~V 397 (657)
||+||.|.+||||.+..... .|..+.. +.. .|++|+||.+|+++|+++|+||+||.|.+||||+|+..++..|++|
T Consensus 315 v~~wG~n~~GqLG~g~~~~~~~~p~~v~~-l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v 392 (423)
T 3mvd_K 315 CSVVGRPEYGRLGLGDVKDVVEKPTIVKK-LTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVV 392 (423)
T ss_dssp EEEEECCGGGTTCSSSCCSCEEEEEECTT-CCS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSSSCCEEEEEEC
T ss_pred EEEEECCCCCCCCCCCccccccCceEecc-CCC-CEEEEEcCCCeEEEEcCCCCEEEECCCCCCCCCCCCCCCcccCeEE
Confidence 99999999999999886653 5666653 333 7999999999999999999999999999999999999999999999
Q ss_pred cc--cCCCcEEEEEcCCCceeeeeee
Q 006205 398 EA--LKDKQVKSIACGTNFTAAICLH 421 (657)
Q Consensus 398 ~~--l~~~~v~~Ia~G~~hT~al~~~ 421 (657)
.. +.+++|.+|+||.+||++|+..
T Consensus 393 ~~~~~~~~~v~~va~G~~ht~~l~~~ 418 (423)
T 3mvd_K 393 VSKNTQGKHMLLASGGGQHAIFLVKA 418 (423)
T ss_dssp CSTTTTTCCEEEEEECSSEEEEEEEC
T ss_pred eCcccCCCEEEEEEECCCcEEEEEcc
Confidence 85 6788999999999999999865
No 4
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=5.3e-66 Score=565.41 Aligned_cols=365 Identities=27% Similarity=0.489 Sum_probs=318.3
Q ss_pred CccccCCCCcEEEEcCCCCCCccCCCCCCCccccccccccCCceeecccCCCCeEEEEecCCeEEEEEcCCcEEEEeCCC
Q 006205 25 GHDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEES 104 (657)
Q Consensus 25 ~~~~l~~~G~Vy~WG~n~~~G~LG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~I~~Ia~G~~h~~~lt~~G~Vy~wG~n~ 104 (657)
+..+++.+|+||+||.|. +||||.|... .....|+.+... .+|++|+||..|+++|+++|+||+||.|.
T Consensus 19 h~~~l~~~g~v~~wG~n~-~GqLG~g~~~--------~~~~~P~~v~~~--~~i~~va~G~~hs~~l~~~G~v~~wG~n~ 87 (413)
T 1a12_A 19 HRSHSTEPGLVLTLGQGD-VGQLGLGENV--------MERKKPALVSIP--EDVVQAEAGGMHTVCLSKSGQVYSFGCND 87 (413)
T ss_dssp CTTCCCCCBEEEEEEECT-TSTTCSCTTC--------CEEEEEEEECCS--SCEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred cceeecCCCcEEEEECCC-CCcCCCCCCc--------cccccceEccCC--CCeEEEEeCCCeEEEEcCCCCEEEEECCC
Confidence 458999999999999999 9999999722 234578777653 68999999999999999999999999999
Q ss_pred CCCcCCCCCC--CcccceEeccCCCCcEEEEEeCCceEEEEEcCCcEEEEcC--CCCCCCccCCCCCcc-eeeeeeecCC
Q 006205 105 GGRLGHGVDS--DVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGD--GTYNFGLLGHGNEVS-HWVPKRVNGP 179 (657)
Q Consensus 105 ~GqLG~g~~~--~~~~P~~v~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~--n~~~~GqLG~~~~~~-~~~P~~v~~~ 179 (657)
+||||++... ....|.+|.. . .+|++|+||.+|+++|+++|+||+||. | .+||||.+.... ...|.++.
T Consensus 88 ~GqLG~~~~~~~~~~~P~~v~l-~-~~i~~va~G~~hs~alt~~G~v~~wG~~~n--~~GqlG~~~~~~~~~~P~~v~-- 161 (413)
T 1a12_A 88 EGALGRDTSVEGSEMVPGKVEL-Q-EKVVQVSAGDSHTAALTDDGRVFLWGSFRD--NNGVIGLLEPMKKSMVPVQVQ-- 161 (413)
T ss_dssp TSTTCSCCCSTTGGGSCEECCC-C-SCEEEEEECSSEEEEEETTSCEEEEECEEE--TTEEEESSBBTBCEEEEEEEC--
T ss_pred CCCCCCCCCCCccccCCeEecC-C-CcEEEEecCCCeEEEEcCCCcEEEeeCCcC--CCCccCcCCccccccCCEEec--
Confidence 9999998763 4667888853 3 389999999999999999999999998 6 679999887654 34688873
Q ss_pred CCCceEEEEeeCCceEEEEecCCcEEEEecCCCCccCCCCCc-----------ccccceeeecc-----CCCeEEEEEeC
Q 006205 180 LEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRK-----------SVSIPREVESL-----KGLRTVRAACG 243 (657)
Q Consensus 180 l~~~~I~~Ia~G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~-----------~~~~P~~v~~l-----~~~~I~~Ia~G 243 (657)
...+|++|+||.+|+++|+++|+||+||.|.+||||++... ....|+.+... ...+|++|+||
T Consensus 162 -~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G 240 (413)
T 1a12_A 162 -LDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCG 240 (413)
T ss_dssp -CSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEE
T ss_pred -CCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeC
Confidence 45689999999999999999999999999999999987432 23567666543 45689999999
Q ss_pred CCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeecCC--CCeEEEEccCcEEEEEecCCcEE
Q 006205 244 VWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVE--PNFCRVACGHSLTVALTTSGHVY 321 (657)
Q Consensus 244 ~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~~--~~i~~I~~G~~~t~aLt~~G~Vy 321 (657)
.+|+++|+ .+|+||+||.|.+||||+++......|+.+..+.+ .+|++|+||.+|+++|+++|+||
T Consensus 241 ~~hs~alt------------~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~ 308 (413)
T 1a12_A 241 AYFTFAIS------------HEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAY 308 (413)
T ss_dssp TTEEEEEE------------TTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEE
T ss_pred CCEEEEEe------------CCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEE
Confidence 99999999 69999999999999999999999999999998866 67999999999999999999999
Q ss_pred EEeCCCCCCCCCCCCC--CCcceeeccccCCCCEEEEEEccccccccccCCeEEEEecCCCCCCCCCCCCCCcccEEecc
Q 006205 322 TMGSPVYGQLGNPQAD--GKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEA 399 (657)
Q Consensus 322 ~wG~n~~GqLG~~~~~--~~~p~~v~~~l~~~~V~~Ia~G~~ht~aLt~~G~vy~WG~n~~GqLG~g~~~~~~~P~~V~~ 399 (657)
+||.|.+||||.+... ...|..+... . .|++|+||.+|+++|+++|+||+||.|.+||||+|+.++...|++|..
T Consensus 309 ~wG~n~~GqLG~g~~~~~~~~P~~v~~l-~--~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~~ 385 (413)
T 1a12_A 309 SLGRAEYGRLGLGEGAEEKSIPTLISRL-P--AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMG 385 (413)
T ss_dssp EEECCGGGTTCSCTTCCCEEEEEECCSS-S--SEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCS
T ss_pred EeeCCCCCccCCCCCCccccCCEEeccc-C--ceeEEEECcceEEEEeCCCCEEEecCCCCCCCCCCCCCCcccCeEccc
Confidence 9999999999998432 3467776642 2 799999999999999999999999999999999999999999999974
Q ss_pred --cCCCcEEEEEcCCCceeeeeeec
Q 006205 400 --LKDKQVKSIACGTNFTAAICLHK 422 (657)
Q Consensus 400 --l~~~~v~~Ia~G~~hT~al~~~k 422 (657)
+.+.+|.+|+||.+||++|+.++
T Consensus 386 ~~~~~~~v~~v~~G~~ht~~l~~~g 410 (413)
T 1a12_A 386 KQLENRVVLSVSSGGQHTVLLVKDK 410 (413)
T ss_dssp TTTTTEEEEEEEECSSEEEEEEEEC
T ss_pred cccCCCeEEEEeeCCCcEEEEEecC
Confidence 57779999999999999998653
No 5
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-65 Score=571.60 Aligned_cols=369 Identities=23% Similarity=0.392 Sum_probs=315.6
Q ss_pred cccCCCCcEEEEcCCCCCCccCCCCCCCccccccccccCCceeeccc--CCCCeEEEEecCCeEEEEEcCCcEEEEeCCC
Q 006205 27 DDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESA--VVLDVQNIACGGRHAALVNKQGEVFSWGEES 104 (657)
Q Consensus 27 ~~l~~~G~Vy~WG~n~~~G~LG~g~~~~~~~~~~~~~~~~P~~i~~~--~~~~I~~Ia~G~~h~~~lt~~G~Vy~wG~n~ 104 (657)
.+++.+|+||+||.|. +||||.|+.. ...+...|++++.+ ...+|++|+||..|+++|+++|+||+||.|.
T Consensus 23 ~~~~~~g~v~~wG~n~-~GqLG~G~~~------~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~wG~n~ 95 (473)
T 3of7_A 23 YLSVQPLDIFCWGTGS-MCELGLGPLA------KNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCND 95 (473)
T ss_dssp HCCSSCCEEEEEEECT-TSTTCSCSCG------GGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEEEECCT
T ss_pred ccCCCCccEEEEcCCC-CCccCCCCCc------ccccccCcccccccccCCCCEEEEEeCCCeEEEEecCCeEEEeECCC
Confidence 6789999999999999 9999999721 12345667776655 4568999999999999999999999999999
Q ss_pred CCCcCCCCCCC-----------------------cccceEecc--C----CCCcEEEEEeCCceEEEEEcCCcEEEEcCC
Q 006205 105 GGRLGHGVDSD-----------------------VLHPKLIDA--L----SNMNIELVACGEYHTCAVTLSGDLYTWGDG 155 (657)
Q Consensus 105 ~GqLG~g~~~~-----------------------~~~P~~v~~--l----~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n 155 (657)
+||||++.... ...|.+|.. + .+.+|++|+||.+|++||+++|+||+||.|
T Consensus 96 ~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG~n 175 (473)
T 3of7_A 96 VGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTF 175 (473)
T ss_dssp TSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEECE
T ss_pred CCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEEEeeCC
Confidence 99999987654 567888875 5 367999999999999999999999999985
Q ss_pred CCCCCccCCCCC--cceeeeeeecCCCCCceEEEEeeCCceEEEEecCCcEEEEecCCCCccCCCCCcc----cccceee
Q 006205 156 TYNFGLLGHGNE--VSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKS----VSIPREV 229 (657)
Q Consensus 156 ~~~~GqLG~~~~--~~~~~P~~v~~~l~~~~I~~Ia~G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~----~~~P~~v 229 (657)
.+..||||.+.. .....|.++.. +.+.+|++|+||.+|+++|+++|+||+||.|.+||||++.... ...|..+
T Consensus 176 ~~~~GqLG~~~~~~~~~~~P~~v~~-l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~ 254 (473)
T 3of7_A 176 RCNEGILGFYQDKIKIQKTPWKVPT-FSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPF 254 (473)
T ss_dssp EETTEEEESBTTTBSCEEEEEECCC-CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEEC
T ss_pred cCCCCccCCCCCCCccccCcEEccc-cCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceec
Confidence 447899998544 35678888875 5567899999999999999999999999999999999986544 4456665
Q ss_pred eccCCCeEEEEEeCCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCC----ceeecEEEeecCCCCeEEEE
Q 006205 230 ESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKE----AKLVPTCVAALVEPNFCRVA 305 (657)
Q Consensus 230 ~~l~~~~I~~Ia~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~----~~~~P~~v~~l~~~~i~~I~ 305 (657)
.. .+|++|+||.+|+++|+ .+|+||+||.|.+||||.+... ....|+.|..+.+.+|++|+
T Consensus 255 ~~---~~v~~Ia~G~~hs~alt------------~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia 319 (473)
T 3of7_A 255 GL---RHVKYIASGENHCFALT------------KDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIA 319 (473)
T ss_dssp SC---CSEEEEEECSSEEEEEE------------TTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEE
T ss_pred CC---cceEEEecCCCeEEEEe------------cCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEEE
Confidence 43 47999999999999999 6999999999999999998754 45789999988888999999
Q ss_pred ccCcEEEEEecCCcEEEEeCCCCCCCCCCCCCC---------------CcceeeccccCCCCEEEEEEccccccccccCC
Q 006205 306 CGHSLTVALTTSGHVYTMGSPVYGQLGNPQADG---------------KLPNRVEGKLSKSFVEEIACGSYHVAVLTSKT 370 (657)
Q Consensus 306 ~G~~~t~aLt~~G~Vy~wG~n~~GqLG~~~~~~---------------~~p~~v~~~l~~~~V~~Ia~G~~ht~aLt~~G 370 (657)
||.+|+++|+++|+||+||.|.+||||.+.... ..|..+.. ...|++|+||.+|++||+++|
T Consensus 320 ~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~---~~~v~~Ia~G~~hs~al~~~G 396 (473)
T 3of7_A 320 AGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNN---VPKFKSVAAGSHHSVAVAQNG 396 (473)
T ss_dssp ECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCS---SCCEEEEEECSSEEEEEETTS
T ss_pred eCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCC---CCceEEEEeCCCeEEEEeCCC
Confidence 999999999999999999999999999875310 13444432 127999999999999999999
Q ss_pred eEEEEecCCCCCCCCCC-CCCCcccEEec--ccCCCcEEEEEcCCCceeeeeee
Q 006205 371 EVYTWGKGANGRLGHGD-TDDRNSPSLVE--ALKDKQVKSIACGTNFTAAICLH 421 (657)
Q Consensus 371 ~vy~WG~n~~GqLG~g~-~~~~~~P~~V~--~l~~~~v~~Ia~G~~hT~al~~~ 421 (657)
+||+||.|.+||||+|+ ..+...|++|+ .+.+++|++|+||.+||+++..+
T Consensus 397 ~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~~~ 450 (473)
T 3of7_A 397 IAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGGVK 450 (473)
T ss_dssp CEEEEECCTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEECSSEEEEEEEE
T ss_pred cEEEeeCCCCCCCCCCCCCccccCCeEecccccCCCeEEEEeeCCCeEEEEEec
Confidence 99999999999999999 78889999998 46777899999999999999864
No 6
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=6.2e-63 Score=539.91 Aligned_cols=332 Identities=36% Similarity=0.656 Sum_probs=311.2
Q ss_pred CCCeEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeCCceEEEEEcCC-cEEEEc
Q 006205 75 VLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSG-DLYTWG 153 (657)
Q Consensus 75 ~~~I~~Ia~G~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~aLt~dG-~Vy~wG 153 (657)
..+|++|+||..|+++|+++|+||+||.|.+||||++...+...|.++..+.+.+|++|+||.+|+++|+++| +||+||
T Consensus 15 ~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG 94 (406)
T 4d9s_A 15 PRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWG 94 (406)
T ss_dssp CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEE
T ss_pred ccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEc
Confidence 3589999999999999999999999999999999999999999999999999889999999999999999986 999999
Q ss_pred CCCCCCCccCCCCCcceeeeeeecCCCCCceEEEEeeCCceEEEEecCCcEEEEecCCCCccCCCCCcccccceeeeccC
Q 006205 154 DGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLK 233 (657)
Q Consensus 154 ~n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~ 233 (657)
.| .+||||++.......|.++.. +.+.+|++|+||..|+++|+++|+||+||.|.+||||+++......|+++..+.
T Consensus 95 ~n--~~GqLG~g~~~~~~~p~~v~~-l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~ 171 (406)
T 4d9s_A 95 WG--DFGRLGHGNSSDLFTPLPIKA-LHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFE 171 (406)
T ss_dssp CC--GGGTTCSSSCCCEEEEEECGG-GTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGT
T ss_pred CC--CCcCCCCCCCCccccceEecc-cCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccC
Confidence 99 679999999988889988875 567789999999999999999999999999999999999998889999999999
Q ss_pred CCeEEEEEeCCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeecCCCCeEEEEccCcEEEE
Q 006205 234 GLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVA 313 (657)
Q Consensus 234 ~~~I~~Ia~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~~~~i~~I~~G~~~t~a 313 (657)
+.+|++|+||.+|+++|+ .+|+||+||.|.+||||+++......|.++..+...+|++|+||.+|+++
T Consensus 172 ~~~i~~va~G~~hs~alt------------~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~ 239 (406)
T 4d9s_A 172 GIRIKMVAAGAEHTAAVT------------EDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTIS 239 (406)
T ss_dssp TCCEEEEEECSSEEEEEE------------TTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEE
T ss_pred CCcEEEEecCCCeEEEEe------------CCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEE
Confidence 999999999999999999 69999999999999999999999999999998888899999999999999
Q ss_pred EecCCcEEEEeCCCCCCCCCCCCCC-CcceeeccccCCCCEEEEEEccccccccccCCeEEEEecCCCCCCCCCCCCCCc
Q 006205 314 LTTSGHVYTMGSPVYGQLGNPQADG-KLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRN 392 (657)
Q Consensus 314 Lt~~G~Vy~wG~n~~GqLG~~~~~~-~~p~~v~~~l~~~~V~~Ia~G~~ht~aLt~~G~vy~WG~n~~GqLG~g~~~~~~ 392 (657)
|+++|+||+||.|.+||||.+.... ..|..+.. +.+..|++|+||.+|+++|+++|+||+||.|.+||||+++..+..
T Consensus 240 l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~-~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~ 318 (406)
T 4d9s_A 240 VSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEA-LSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQC 318 (406)
T ss_dssp EETTCCEEEEECCTTSTTCSSSCCCEEEEEECGG-GTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEE
T ss_pred EcCCCCEEEeeCCCCCCCCCCCCcCccccEEecc-cCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCc
Confidence 9999999999999999999987544 45766663 667789999999999999999999999999999999999999999
Q ss_pred ccEEecccCCCcEEEEEcCCCceeeeeeec
Q 006205 393 SPSLVEALKDKQVKSIACGTNFTAAICLHK 422 (657)
Q Consensus 393 ~P~~V~~l~~~~v~~Ia~G~~hT~al~~~k 422 (657)
.|++|..+.+.+|++|+||.+|++||+...
T Consensus 319 ~p~~v~~~~~~~v~~va~G~~hs~alt~~G 348 (406)
T 4d9s_A 319 SPVQVRFPDDQKVVQVSCGWRHTLAVTERN 348 (406)
T ss_dssp EEEEECCGGGCCEEEEEECSSEEEEEETTS
T ss_pred cCEEEeccCCCcEEEEEeCCCeEEEEeCCC
Confidence 999999888889999999999999998643
No 7
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.5e-59 Score=510.28 Aligned_cols=328 Identities=35% Similarity=0.589 Sum_probs=289.4
Q ss_pred EEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeCCceEEEEEcCCcEEEEcCCCCCC
Q 006205 80 NIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNF 159 (657)
Q Consensus 80 ~Ia~G~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n~~~~ 159 (657)
++..-..+.++|+.+|+||+||.|.+||||.+...+...|.++..+...+|++|+||..|+++|+++|+||+||.| ..
T Consensus 5 ~~~~~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n--~~ 82 (389)
T 3kci_A 5 HHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG--AG 82 (389)
T ss_dssp ----------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECC--GG
T ss_pred ccccCcccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECC--CC
Confidence 4555677889999999999999999999999988888999999988888999999999999999999999999999 67
Q ss_pred CccCCCCCcceeeeeeecCCCC-CceEEEEeeCCceEEEEecCCcEEEEecCCCCccCCCCCcccccceeeeccCCCeEE
Q 006205 160 GLLGHGNEVSHWVPKRVNGPLE-GIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTV 238 (657)
Q Consensus 160 GqLG~~~~~~~~~P~~v~~~l~-~~~I~~Ia~G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~ 238 (657)
||||.+.......|.++..... ..++++|+||.+|+++|+++|+||+||.|.+||||+++......|+.++.+.+.+|+
T Consensus 83 GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~ 162 (389)
T 3kci_A 83 GRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVV 162 (389)
T ss_dssp GTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEE
T ss_pred CCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEE
Confidence 9999999888889998875322 246789999999999999999999999999999999999888999999999999999
Q ss_pred EEEeCCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeecCCCCeEEEEccC--cEEEEEec
Q 006205 239 RAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGH--SLTVALTT 316 (657)
Q Consensus 239 ~Ia~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~~~~i~~I~~G~--~~t~aLt~ 316 (657)
+|+||.+|+++|+ .+|+||+||.|.+||||+++......|+.+..+.+.+|++|+||. .|+++|++
T Consensus 163 ~va~G~~hs~alt------------~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~ 230 (389)
T 3kci_A 163 DVAAGGAHSACVT------------AAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTD 230 (389)
T ss_dssp EEEECSSEEEEEE------------TTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEET
T ss_pred EEEeCcCeEEEEe------------CCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEcc
Confidence 9999999999999 699999999999999999999999999999999889999999994 89999999
Q ss_pred CCcEEEEeCCCCCCCCCCCCCC-CcceeeccccCCCCEEEEEEccccccccccCCeEEEEecCCCCCCCCCCCCCCcccE
Q 006205 317 SGHVYTMGSPVYGQLGNPQADG-KLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPS 395 (657)
Q Consensus 317 ~G~Vy~wG~n~~GqLG~~~~~~-~~p~~v~~~l~~~~V~~Ia~G~~ht~aLt~~G~vy~WG~n~~GqLG~g~~~~~~~P~ 395 (657)
+|+||+||.|.+||||.+.... ..|..+.. +.+..|++|+||.+|+++|+++|+||+||.|.+||||+++..+...|+
T Consensus 231 ~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~-~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~ 309 (389)
T 3kci_A 231 DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDS-LTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPR 309 (389)
T ss_dssp TTEEEEEECCGGGTTSSSSCCCEEEEEECGG-GTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEE
T ss_pred CCEEEEEeCCCCCCCCCCCCCCccccEEecc-cCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCe
Confidence 9999999999999999987554 45766664 566789999999999999999999999999999999999999999999
Q ss_pred EecccCCCcEEEEEcCCCceeeeeeec
Q 006205 396 LVEALKDKQVKSIACGTNFTAAICLHK 422 (657)
Q Consensus 396 ~V~~l~~~~v~~Ia~G~~hT~al~~~k 422 (657)
+|+.+.+.+|++|+||.+|++||+.+.
T Consensus 310 ~v~~l~~~~v~~ia~G~~h~~al~~~G 336 (389)
T 3kci_A 310 QVQGLQGKKVIAIATGSLHCVCCTEDG 336 (389)
T ss_dssp ECGGGTTCCEEEEEECSSEEEEEETTC
T ss_pred EeccCCCCCEEEEEeccCeEEEECCCC
Confidence 999999999999999999999998654
No 8
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=5.7e-57 Score=495.20 Aligned_cols=323 Identities=23% Similarity=0.353 Sum_probs=278.1
Q ss_pred CCeEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCC-CCcccceEeccCCCCcEEEEEeCCceEEEEEcCCcEEEEcC
Q 006205 76 LDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVD-SDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGD 154 (657)
Q Consensus 76 ~~I~~Ia~G~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~-~~~~~P~~v~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~ 154 (657)
.++++|++|..|+++++++|+||+||.|.+||||++.. .....|.++..+. .|++|+||..|+++|+++|+||+||.
T Consensus 24 ~~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~--~v~~va~G~~h~~~l~~~G~v~~wG~ 101 (423)
T 3mvd_K 24 AKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIP--DAVDISAGGMHNLVLTKSGDIYSFGC 101 (423)
T ss_dssp -----CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCS--SEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred ceeeEEecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCC--CceEEeeCCCeEEEEeCCCeEEEeEC
Confidence 47889999999999999999999999999999999975 4567788888876 69999999999999999999999999
Q ss_pred CCCCCCccCCCCCcc--eeeeeeecCCCCCceEEEEeeCCceEEEEecCCcEEEEec--CCCCccCCCCCcccccceeee
Q 006205 155 GTYNFGLLGHGNEVS--HWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGD--GTFGVLGHGDRKSVSIPREVE 230 (657)
Q Consensus 155 n~~~~GqLG~~~~~~--~~~P~~v~~~l~~~~I~~Ia~G~~hs~~Lt~~G~vy~wG~--n~~GqLG~g~~~~~~~P~~v~ 230 (657)
| .+||||++.... ...|.++.. ..+|++|+||.+|+++|+++|+||+||. |.+||||.+.......|.++
T Consensus 102 n--~~GqLG~~~~~~~~~~~P~~v~~---~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~- 175 (423)
T 3mvd_K 102 N--DEGALGRDTSEDGSESKPDLIDL---PGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDL- 175 (423)
T ss_dssp C--SSSTTCSCCCSTTSSSSCEECCC---SSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEES-
T ss_pred C--CCcCCCCCCcCCccccCCeEEcC---CCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEe-
Confidence 9 679999987653 567887763 2379999999999999999999999999 99999999877766555544
Q ss_pred ccCCCeEEEEEeCCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCC-----------CceeecEEEeecCCC
Q 006205 231 SLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDK-----------EAKLVPTCVAALVEP 299 (657)
Q Consensus 231 ~l~~~~I~~Ia~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~-----------~~~~~P~~v~~l~~~ 299 (657)
+.+.+|++|+||.+|+++|+ .+|+||+||.|.+||||++.. .....|..+..+...
T Consensus 176 -~~~~~i~~va~G~~hs~alt------------~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~ 242 (423)
T 3mvd_K 176 -MEGTVCCSIASGADHLVILT------------TAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAK 242 (423)
T ss_dssp -STTCCEEEEEECSSEEEEEE------------TTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCC
T ss_pred -cCCCcEEEEecCCCeEEEEe------------cCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCc
Confidence 56778999999999999999 699999999999999999764 345689999888888
Q ss_pred CeEEEEccCcEEEEE-ecCCcEEEEeCCCCCCCCCCCCCC-CcceeeccccCCCCEEEEEEccccccccccCCeEEEEec
Q 006205 300 NFCRVACGHSLTVAL-TTSGHVYTMGSPVYGQLGNPQADG-KLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGK 377 (657)
Q Consensus 300 ~i~~I~~G~~~t~aL-t~~G~Vy~wG~n~~GqLG~~~~~~-~~p~~v~~~l~~~~V~~Ia~G~~ht~aLt~~G~vy~WG~ 377 (657)
+|++|+||.+|++++ +++|+||+||.|.+||||.+.... ..+.++.. ....|++|+||.+|+++|+++|+||+||.
T Consensus 243 ~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~--~~~~v~~ia~G~~ht~alt~~G~v~~wG~ 320 (423)
T 3mvd_K 243 PFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKT--ELKDIRHIAGGQHHTVILTTDLKCSVVGR 320 (423)
T ss_dssp CEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEE--CCCSEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred cEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEc--CCCCeEEEEcccCeEEEEeCCCcEEEEEC
Confidence 999999999999999 699999999999999999954332 22222221 13579999999999999999999999999
Q ss_pred CCCCCCCCCCCCC-CcccEEecccCCCcEEEEEcCCCceeeeeeec
Q 006205 378 GANGRLGHGDTDD-RNSPSLVEALKDKQVKSIACGTNFTAAICLHK 422 (657)
Q Consensus 378 n~~GqLG~g~~~~-~~~P~~V~~l~~~~v~~Ia~G~~hT~al~~~k 422 (657)
|.+||||+++..+ ...|++|+.+.+ +|++|+||.+|++||+.+.
T Consensus 321 n~~GqLG~g~~~~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~G 365 (423)
T 3mvd_K 321 PEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDG 365 (423)
T ss_dssp CGGGTTCSSSCCSCEEEEEECTTCCS-CEEEEEEETTEEEEEETTS
T ss_pred CCCCCCCCCCccccccCceEeccCCC-CEEEEEcCCCeEEEEcCCC
Confidence 9999999998776 468999998887 8999999999999998654
No 9
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=3.1e-56 Score=488.00 Aligned_cols=335 Identities=30% Similarity=0.461 Sum_probs=285.9
Q ss_pred EEeeecccccccCCCCc-cccCCCCcEEEEcCCCCCCccCCCCCCCccccccccccCCceeecccCCCCeEEEEecCCeE
Q 006205 10 RVSLSSAVSSSSQGSGH-DDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHA 88 (657)
Q Consensus 10 r~~~~~~~~~~s~G~~~-~~l~~~G~Vy~WG~n~~~G~LG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~I~~Ia~G~~h~ 88 (657)
++.....+..++.|..| .+|+.+|+||+||.|. +||||.+... ......|+.+.. ..+|++|+||..|+
T Consensus 54 ~v~~~~~i~~va~G~~hs~~l~~~G~v~~wG~n~-~GqLG~~~~~-------~~~~~~P~~v~l--~~~i~~va~G~~hs 123 (413)
T 1a12_A 54 LVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCND-EGALGRDTSV-------EGSEMVPGKVEL--QEKVVQVSAGDSHT 123 (413)
T ss_dssp EECCSSCEEEEEECSSEEEEEETTSCEEEEECCT-TSTTCSCCCS-------TTGGGSCEECCC--CSCEEEEEECSSEE
T ss_pred EccCCCCeEEEEeCCCeEEEEcCCCCEEEEECCC-CCCCCCCCCC-------CccccCCeEecC--CCcEEEEecCCCeE
Confidence 34444567777888866 7999999999999999 9999998732 134567888753 34899999999999
Q ss_pred EEEEcCCcEEEEeC--CCCCCcCCCCCCCc-ccceEeccCCCCcEEEEEeCCceEEEEEcCCcEEEEcCCCCCCCccCCC
Q 006205 89 ALVNKQGEVFSWGE--ESGGRLGHGVDSDV-LHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHG 165 (657)
Q Consensus 89 ~~lt~~G~Vy~wG~--n~~GqLG~g~~~~~-~~P~~v~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~~ 165 (657)
++|+++|+||+||. |.+||||.+..... ..|.+| +...+|++|+||.+|+++|+++|+||+||.| .+||||.+
T Consensus 124 ~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n--~~GqLG~~ 199 (413)
T 1a12_A 124 AALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCG--EQGQLGRV 199 (413)
T ss_dssp EEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECC--TTSTTCSC
T ss_pred EEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEe--cCCCCEEEEEecCceEEEEcCCCCEEEeeCC--CCCccCCC
Confidence 99999999999999 99999999876543 357777 4466999999999999999999999999999 67999987
Q ss_pred CCc-----------ceeeeeeecCCC----CCceEEEEeeCCceEEEEecCCcEEEEecCCCCccCCCCCcccccceeee
Q 006205 166 NEV-----------SHWVPKRVNGPL----EGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVE 230 (657)
Q Consensus 166 ~~~-----------~~~~P~~v~~~l----~~~~I~~Ia~G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~ 230 (657)
... ....|..+..+. ...+|++|+||.+|+++|+++|+||+||.|.+||||+++......|.+|.
T Consensus 200 ~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~ 279 (413)
T 1a12_A 200 PELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLT 279 (413)
T ss_dssp GGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECG
T ss_pred ccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEch
Confidence 542 124676554321 34689999999999999999999999999999999999888889999999
Q ss_pred ccCC--CeEEEEEeCCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCC-CCCceeecEEEeecCCCCeEEEEcc
Q 006205 231 SLKG--LRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHG-DKEAKLVPTCVAALVEPNFCRVACG 307 (657)
Q Consensus 231 ~l~~--~~I~~Ia~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g-~~~~~~~P~~v~~l~~~~i~~I~~G 307 (657)
.+.+ .+|++|+||.+|+++|+ .+|+||+||.|.+||||++ +......|+.|..+. +|++|+||
T Consensus 280 ~l~~~~~~v~~ia~G~~hs~al~------------~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~--~v~~v~~G 345 (413)
T 1a12_A 280 SFKNSTKSWVGFSGGQHHTVCMD------------SEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP--AVSSVACG 345 (413)
T ss_dssp GGCCTTCCEEEEEECSSEEEEEE------------TTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSS--SEEEEEEC
T ss_pred hccCCCceEEEEecccceEEEEe------------CCCCEEEeeCCCCCccCCCCCCccccCCEEecccC--ceeEEEEC
Confidence 8877 67999999999999999 6999999999999999999 567788999998774 89999999
Q ss_pred CcEEEEEecCCcEEEEeCCCCCCCCCCCCCC-Ccceeeccc-cCCCCEEEEEEccccccccccCCeE
Q 006205 308 HSLTVALTTSGHVYTMGSPVYGQLGNPQADG-KLPNRVEGK-LSKSFVEEIACGSYHVAVLTSKTEV 372 (657)
Q Consensus 308 ~~~t~aLt~~G~Vy~wG~n~~GqLG~~~~~~-~~p~~v~~~-l~~~~V~~Ia~G~~ht~aLt~~G~v 372 (657)
.+|++||+++|+||+||.|.+||||.+.... ..|..+... +.+.+|++|+||.+|+++|+++|++
T Consensus 346 ~~hs~alt~~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~~~v~~v~~G~~ht~~l~~~g~~ 412 (413)
T 1a12_A 346 ASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQ 412 (413)
T ss_dssp SSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEEECSC
T ss_pred cceEEEEeCCCCEEEecCCCCCCCCCCCCCCcccCeEccccccCCCeEEEEeeCCCcEEEEEecCCC
Confidence 9999999999999999999999999987543 467777642 4566799999999999999998753
No 10
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-56 Score=493.00 Aligned_cols=326 Identities=24% Similarity=0.385 Sum_probs=277.6
Q ss_pred CeEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCC---CCcccceEeccC--CCCcEEEEEeCCceEEEEEcCCcEEE
Q 006205 77 DVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVD---SDVLHPKLIDAL--SNMNIELVACGEYHTCAVTLSGDLYT 151 (657)
Q Consensus 77 ~I~~Ia~G~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~---~~~~~P~~v~~l--~~~~I~~Va~G~~hs~aLt~dG~Vy~ 151 (657)
.|....++..|+++++++|+||+||.|.+||||++.. .+...|.+++.+ ...+|++|+||..|++||+++|+||+
T Consensus 11 ~~~~~~~~~~h~~~~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~ 90 (473)
T 3of7_A 11 HIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWS 90 (473)
T ss_dssp TCCCCGGGGHHHHCCSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEE
T ss_pred hhhhhcccccccccCCCCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEecCCeEEE
Confidence 4667788899999999999999999999999999984 346778888776 56799999999999999999999999
Q ss_pred EcCCCCCCCccCCCCCcc-----------------------eeeeeeecC--CC---CCceEEEEeeCCceEEEEecCCc
Q 006205 152 WGDGTYNFGLLGHGNEVS-----------------------HWVPKRVNG--PL---EGIHVSSISCGPWHTAVVTSAGQ 203 (657)
Q Consensus 152 wG~n~~~~GqLG~~~~~~-----------------------~~~P~~v~~--~l---~~~~I~~Ia~G~~hs~~Lt~~G~ 203 (657)
||.| ..||||.+.... ...|.++.. +. .+.+|++|+||.+|+++|+++|+
T Consensus 91 wG~n--~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~ 168 (473)
T 3of7_A 91 WGCN--DVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGE 168 (473)
T ss_dssp EECC--TTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSC
T ss_pred eECC--CCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCe
Confidence 9999 679999987654 456777753 21 35789999999999999999999
Q ss_pred EEEEec--CCCCccCCCCC--cccccceeeeccCCCeEEEEEeCCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCC
Q 006205 204 LFTFGD--GTFGVLGHGDR--KSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRL 279 (657)
Q Consensus 204 vy~wG~--n~~GqLG~g~~--~~~~~P~~v~~l~~~~I~~Ia~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqL 279 (657)
||+||. |.+||||++.. .....|.+|..+.+.+|++|+||.+|+++|+ .+|+||+||.|.+|||
T Consensus 169 vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt------------~~G~v~~wG~n~~GqL 236 (473)
T 3of7_A 169 VYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLD------------EEGMVFAWGNGQQNQL 236 (473)
T ss_dssp EEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEE------------TTSCEEEEECCTTSTT
T ss_pred EEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEe------------CCCeEEEEeCCCCCCC
Confidence 999998 68999998543 3567899999888889999999999999999 6999999999999999
Q ss_pred CCCCCCc----eeecEEEeecCCCCeEEEEccCcEEEEEecCCcEEEEeCCCCCCCCCCCCCC-----CcceeeccccCC
Q 006205 280 GHGDKEA----KLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADG-----KLPNRVEGKLSK 350 (657)
Q Consensus 280 G~g~~~~----~~~P~~v~~l~~~~i~~I~~G~~~t~aLt~~G~Vy~wG~n~~GqLG~~~~~~-----~~p~~v~~~l~~ 350 (657)
|.+.... ...|..+.. .+|++|+||.+|++||+++|+||+||.|.+||||.+.... ..|..+. .+.+
T Consensus 237 G~~~~~~~~~~~~~p~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~-~~~~ 312 (473)
T 3of7_A 237 GRKVMERFRLKTLDPRPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLA-LPDN 312 (473)
T ss_dssp SSCCCGGGTTTTCSCEECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECC-CCTT
T ss_pred CCCccccccccccCceecCC---cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeecccccc-ccCC
Confidence 9986543 456776643 6899999999999999999999999999999999887542 3566666 3566
Q ss_pred CCEEEEEEccccccccccCCeEEEEecCCCCCCCCCCCC--------------CCcccEEecccCCCcEEEEEcCCCcee
Q 006205 351 SFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTD--------------DRNSPSLVEALKDKQVKSIACGTNFTA 416 (657)
Q Consensus 351 ~~V~~Ia~G~~ht~aLt~~G~vy~WG~n~~GqLG~g~~~--------------~~~~P~~V~~l~~~~v~~Ia~G~~hT~ 416 (657)
..|++|+||.+|+++|+++|+||+||.|.+||||++... ....|++|+.+. .|++|+||.+|++
T Consensus 313 ~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~--~v~~Ia~G~~hs~ 390 (473)
T 3of7_A 313 VVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP--KFKSVAAGSHHSV 390 (473)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC--CEEEEEECSSEEE
T ss_pred ccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCC--ceEEEEeCCCeEE
Confidence 789999999999999999999999999999999987531 123566666443 7999999999999
Q ss_pred eeeeec
Q 006205 417 AICLHK 422 (657)
Q Consensus 417 al~~~k 422 (657)
||+...
T Consensus 391 al~~~G 396 (473)
T 3of7_A 391 AVAQNG 396 (473)
T ss_dssp EEETTS
T ss_pred EEeCCC
Confidence 998653
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=3.6e-51 Score=424.89 Aligned_cols=271 Identities=26% Similarity=0.405 Sum_probs=225.5
Q ss_pred CcEEEEcCCCCCCccCCCCCCCccccccccccCCceeecccCCCCeEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCC
Q 006205 33 GDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGV 112 (657)
Q Consensus 33 G~Vy~WG~n~~~G~LG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~I~~Ia~G~~h~~~lt~~G~Vy~wG~n~~GqLG~g~ 112 (657)
.+||+||.|. ..++.. .| ++. ..+|++|+||..|+++|+ +|+||+||.|.+||||.+
T Consensus 2 ~~v~~WG~n~-~~~~~~----------------~p--~~~--~~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p- 58 (282)
T 3qhy_B 2 TSVVAWGGNN-DWGEAT----------------VP--AEA--QSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMP- 58 (282)
T ss_dssp CEEEEECSCC-TTSTTC----------------CC--GGG--SSSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCC-
T ss_pred eEEEEeCCCC-CcCccc----------------CC--ccc--cCCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCC-
Confidence 3699999987 333221 12 222 227999999999999998 999999999999999952
Q ss_pred CCCcccceEeccCCCCcEEEEEeCCceEEEEEcCCcEEEEcCCCCCCCccCCCCCcceeeeeeecCCCCCceEEEEeeCC
Q 006205 113 DSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGP 192 (657)
Q Consensus 113 ~~~~~~P~~v~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~G~ 192 (657)
.. . ..+|++|+||.+|+++|+ +|+||+||.| .+||||. |.++. .+|++|+||.
T Consensus 59 -------~~--~--~~~i~~ia~G~~hs~~l~-~G~v~~wG~n--~~Gqlg~--------P~~~~-----~~v~~ia~G~ 111 (282)
T 3qhy_B 59 -------AA--T--QSGVDAIAAGNYHSLALK-DGEVIAWGGN--EDGQTTV--------PAEAR-----SGVDAIAAGA 111 (282)
T ss_dssp -------GG--G--GSCCCEEEECSSEEEEEE-TTEEEEEECC--TTSTTCC--------CGGGS-----SSEEEEEEET
T ss_pred -------cc--C--CCCEEEEEeCCCEEEEEE-CCEEEEeeCC--CCCCCCC--------CcccC-----CCeEEEECcC
Confidence 21 1 237999999999999996 9999999999 6799984 44442 3699999999
Q ss_pred ceEEEEecCCcEEEEecCCCCccCCCCCcccccceeeeccCCCeEEEEEeCCCeeEEEEEeeecCCCccccCCCcEEEEc
Q 006205 193 WHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWG 272 (657)
Q Consensus 193 ~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Ia~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG 272 (657)
+|+++|+ +|+||+||.|.+||||.. . ....+|++|+||.+|+++++ +|+||+||
T Consensus 112 ~hs~al~-~G~v~~wG~n~~gqlg~~--------~----~~~~~i~~i~~G~~~~~~l~-------------~G~v~~wG 165 (282)
T 3qhy_B 112 WASYALK-DGKVIAWGDDSDGQTTVP--------A----EAQSGVTALDGGVYTALAVK-------------NGGVIAWG 165 (282)
T ss_dssp TEEEEEE-TTEEEEEECCTTSTTSCC--------G----GGGSSEEEEEECSSEEEEEE-------------TTEEEEEE
T ss_pred CEEEEEe-CCeEEEecCCCCCcCCCC--------c----cCCCCeEEEEcccCEEEEEE-------------CCEEEEec
Confidence 9999999 999999999999999842 1 11236999999999999996 79999999
Q ss_pred CCCCCCCCCCCCCceeecEEEeecCCCCeEEEEccCcEEEEEecCCcEEEEeCCCCCCCCCCCCCCCcceeeccccCCCC
Q 006205 273 DGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSF 352 (657)
Q Consensus 273 ~n~~gqLG~g~~~~~~~P~~v~~l~~~~i~~I~~G~~~t~aLt~~G~Vy~wG~n~~GqLG~~~~~~~~p~~v~~~l~~~~ 352 (657)
.|.+||||.. . ....+|++|+||.+|+++| ++|+||+||.|.+||||.+.. . ...
T Consensus 166 ~n~~gqlg~p--------~----~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~~-------~-----~~~ 220 (282)
T 3qhy_B 166 DNYFGQTTVP--------A----EAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTE-------A-----LSG 220 (282)
T ss_dssp CCTTSTTSCC--------G----GGGSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGG-------G-----GSS
T ss_pred CCCCCCCCCc--------e----ecCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCcc-------c-----CCC
Confidence 9999999832 1 1236899999999999999 899999999999999996531 1 135
Q ss_pred EEEEEEccccccccccCCeEEEEecCCCCCCCCCCCCCCcccEEecccCCCcEEEEEcCCCceeeeeee
Q 006205 353 VEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAICLH 421 (657)
Q Consensus 353 V~~Ia~G~~ht~aLt~~G~vy~WG~n~~GqLG~g~~~~~~~P~~V~~l~~~~v~~Ia~G~~hT~al~~~ 421 (657)
|++|+||.+|+++|+ +|+||+||.|.+||++.. ..|++|+||..|++||+.+
T Consensus 221 v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~~v~----------------~~v~~iaaG~~h~~al~~~ 272 (282)
T 3qhy_B 221 VSAIASGEWYSLALK-NGKVIAWGSSRTAPSSVQ----------------SGVSSIEAGPNAAYALKGG 272 (282)
T ss_dssp CCEEEECSSCEEEEE-TTEEEEESTTCCCCGGGS----------------SCEEEEEECSSCEEEEEC-
T ss_pred ceEEEcCCCEEEEEE-CCEEEEecCCCCccccCC----------------CCcEEEEECcCeEEEEecC
Confidence 899999999999999 999999999999999752 1599999999999999865
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=1.9e-45 Score=381.83 Aligned_cols=252 Identities=25% Similarity=0.404 Sum_probs=209.5
Q ss_pred cccccccCCCCc-cccCCCCcEEEEcCCCCCCccCCCCCCCccccccccccCCceeecccCCCCeEEEEecCCeEEEEEc
Q 006205 15 SAVSSSSQGSGH-DDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVNK 93 (657)
Q Consensus 15 ~~~~~~s~G~~~-~~l~~~G~Vy~WG~n~~~G~LG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~I~~Ia~G~~h~~~lt~ 93 (657)
..+..++.|..| .+++ +|+||+||.|. +||||... . ...+|++|+||..|+++|+
T Consensus 24 ~~i~~ia~G~~h~~~l~-~G~v~~wG~n~-~Gqlg~p~-----------------~----~~~~i~~ia~G~~hs~~l~- 79 (282)
T 3qhy_B 24 SGVDAIAGGYFHGLALK-GGKVLGWGANL-NGQLTMPA-----------------A----TQSGVDAIAAGNYHSLALK- 79 (282)
T ss_dssp SSCCEEEECSSEEEEEE-TTEEEEEECCS-SSTTSCCG-----------------G----GGSCCCEEEECSSEEEEEE-
T ss_pred CCCcEEEeCCCeEEEEE-CCEEEEEeCCC-CCCCCCCc-----------------c----CCCCEEEEEeCCCEEEEEE-
Confidence 356777788866 6777 99999999999 99999432 1 1237999999999999996
Q ss_pred CCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeCCceEEEEEcCCcEEEEcCCCCCCCccCCCCCcceeee
Q 006205 94 QGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVP 173 (657)
Q Consensus 94 ~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~~~~~~~~~P 173 (657)
+|+||+||.|.+||||. |..+. .+|++|+||.+|+++|+ +|+||+||.| .+||||. |
T Consensus 80 ~G~v~~wG~n~~Gqlg~--------P~~~~----~~v~~ia~G~~hs~al~-~G~v~~wG~n--~~gqlg~--------~ 136 (282)
T 3qhy_B 80 DGEVIAWGGNEDGQTTV--------PAEAR----SGVDAIAAGAWASYALK-DGKVIAWGDD--SDGQTTV--------P 136 (282)
T ss_dssp TTEEEEEECCTTSTTCC--------CGGGS----SSEEEEEEETTEEEEEE-TTEEEEEECC--TTSTTSC--------C
T ss_pred CCEEEEeeCCCCCCCCC--------CcccC----CCeEEEECcCCEEEEEe-CCeEEEecCC--CCCcCCC--------C
Confidence 99999999999999985 33332 38999999999999999 9999999999 6799983 2
Q ss_pred eeecCCCCCceEEEEeeCCceEEEEecCCcEEEEecCCCCccCCCCCcccccceeeeccCCCeEEEEEeCCCeeEEEEEe
Q 006205 174 KRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEV 253 (657)
Q Consensus 174 ~~v~~~l~~~~I~~Ia~G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Ia~G~~hs~al~e~ 253 (657)
... ..+|++|+||.+|+++|+ +|+||+||.|.+||||. |.++ ..+|++|+||.+|+++| +
T Consensus 137 ~~~-----~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~--------p~~~----~~~v~~i~~G~~hs~al-~- 196 (282)
T 3qhy_B 137 AEA-----QSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV--------PAEA----QSGVDDVAGGIFHSLAL-K- 196 (282)
T ss_dssp GGG-----GSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC--------CGGG----GSSEEEEEECSSEEEEE-E-
T ss_pred ccC-----CCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC--------ceec----CCCeEEEEecCCEEEEE-E-
Confidence 211 236999999999999999 89999999999999983 3222 34799999999999999 6
Q ss_pred eecCCCccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeecCCCCeEEEEccCcEEEEEecCCcEEEEeCCCCCCCCC
Q 006205 254 MVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGN 333 (657)
Q Consensus 254 ~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~~~~i~~I~~G~~~t~aLt~~G~Vy~wG~n~~GqLG~ 333 (657)
+|+||+||.|.+||||.... ...+|++|+||..|+++|+ +|+||+||.|.++|++.
T Consensus 197 -----------~G~v~~wG~n~~gqlg~p~~------------~~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~~v 252 (282)
T 3qhy_B 197 -----------DGKVIAWGDNRYKQTTVPTE------------ALSGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSV 252 (282)
T ss_dssp -----------TTEEEEEECCTTSTTCCCGG------------GGSSCCEEEECSSCEEEEE-TTEEEEESTTCCCCGGG
T ss_pred -----------CCeEEEEECCCCCCCCCCcc------------cCCCceEEEcCCCEEEEEE-CCEEEEecCCCCccccC
Confidence 99999999999999985431 1257999999999999999 99999999999999864
Q ss_pred CCCCCCcceeeccccCCCCEEEEEEccccccccccCCeEE
Q 006205 334 PQADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVY 373 (657)
Q Consensus 334 ~~~~~~~p~~v~~~l~~~~V~~Ia~G~~ht~aLt~~G~vy 373 (657)
+ ..|++|+||..|+++|+++++.+
T Consensus 253 ~----------------~~v~~iaaG~~h~~al~~~~~~~ 276 (282)
T 3qhy_B 253 Q----------------SGVSSIEAGPNAAYALKGGSGSG 276 (282)
T ss_dssp S----------------SCEEEEEECSSCEEEEEC-----
T ss_pred C----------------CCcEEEEECcCeEEEEecCCCCC
Confidence 2 24999999999999999987654
No 13
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3.5e-16 Score=130.80 Aligned_cols=73 Identities=32% Similarity=0.592 Sum_probs=64.2
Q ss_pred eeccccccCcccCCCCCCCCCcccccccccccccceeeccCCCccccccccCCCC----CCCeeeCcchHHhhhcccc
Q 006205 420 LHKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNP----NKPYRVCDNCFNKLRKTFD 493 (657)
Q Consensus 420 ~~kwv~~~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~----~~~~RvC~~C~~~~~~~~~ 493 (657)
...|+++.+...|+.|..+|+ +.++|||||.||++||..||+++++++.++... .+++|||+.||..|.+...
T Consensus 5 ~~~W~pd~~~~~C~~C~~~F~-~~~RrHHCR~CG~vfC~~Cs~~~~~l~~~g~~~p~~~~~~~RVC~~C~~~l~~~~~ 81 (84)
T 1x4u_A 5 SSGRYPTNNFGNCTGCSATFS-VLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASCNQTLSKSGP 81 (84)
T ss_dssp CCCSCSCCCCSSCSSSCCCCC-SSSCCEECSSSCCEECTTTSCEEECSTTTSCCCSSCSSCCEEECHHHHHHHHSCCS
T ss_pred CCccccCCCCCcCcCcCCccc-cchhhhhhcCCCcEEChhhcCCceecccccccCccccCCccEECHHHHHHHhccCC
Confidence 357999999999999999999 666779999999999999999999999877542 3789999999999987654
No 14
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=99.55 E-value=1.6e-15 Score=126.18 Aligned_cols=74 Identities=35% Similarity=0.807 Sum_probs=55.9
Q ss_pred eeeeeeccccccCcccCCCCCCCCCcccccccccccccceeeccCCCccccccccCCCCCCCeeeCcchHHhhhccccC
Q 006205 416 AAICLHKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTFDT 494 (657)
Q Consensus 416 ~al~~~kwv~~~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~~~~~~ 494 (657)
.+|....|+++.+...|+.|..+|+ +.++||||+.||.+||..||+.+++++. ..+|+|||+.||..|.+..++
T Consensus 6 ~~~~~~~W~~d~~~~~C~~C~~~Fs-~~~RrHHCR~CG~v~C~~Cs~~~~~l~~----~~~~~RVC~~C~~~l~~~~~~ 79 (82)
T 2yw8_A 6 QALKGHAWLKDDEATHCRQCEKEFS-ISRRKHHCRNCGHIFCNTCSSNELALPS----YPKPVRVCDSCHTLLLQRCSS 79 (82)
T ss_dssp ---------CCCCCCBCTTTCCBCB-TTBCCEECTTTCCEECSGGGCEEECCTT----CSSCEEECHHHHHHTTC----
T ss_pred hhcCCCccccCccCCcccCcCCccc-CccccccCCCCCCEEChHHhCCeeecCC----CCCcCEECHHHHHHHHHhccc
Confidence 3456678999999999999999999 6667799999999999999999987774 268999999999999876653
No 15
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=99.52 E-value=2.2e-15 Score=125.85 Aligned_cols=70 Identities=34% Similarity=0.772 Sum_probs=61.7
Q ss_pred eeccccccCcccCCCCCCCCCcccccccccccccceeeccCCCccccccccCCCCCCCeeeCcchHHhhhccc
Q 006205 420 LHKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTF 492 (657)
Q Consensus 420 ~~kwv~~~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~~~~ 492 (657)
...|+++.+...|+.|..+|+ +.++|||||.||++||..||+++.++|.++. .+|+|||+.||..|.+..
T Consensus 12 ~~~W~pd~~~~~C~~C~~~Fs-~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~--~~~~RVC~~C~~~l~~~~ 81 (84)
T 1z2q_A 12 KGYWQEDEDAPACNGCGCVFT-TTVRRHHCRNCGYVLCGDCSRHRAAIPMRGI--TEPERVCDACYLALRSSN 81 (84)
T ss_dssp CSCCCCTTTCCBCTTTCCBCC-TTSCCEECTTTCCEECTGGGCCEEEETTTTE--EEEEECCHHHHHHHHTSC
T ss_pred CCccccCCCCCCCcCcCCccc-cchhcccccCCCcEEChHHhCCeEeccCCCC--CCCCEECHHHHHHHhhcc
Confidence 346999999999999999999 5567799999999999999999998886653 589999999999997643
No 16
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=99.48 E-value=2.3e-14 Score=120.37 Aligned_cols=66 Identities=30% Similarity=0.668 Sum_probs=57.2
Q ss_pred cCcccCCCCCCCCCcccccccccccccceeeccCCCccccccccCCCCCCCeeeCcchHHhhhccccCCC
Q 006205 427 VDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTFDTDG 496 (657)
Q Consensus 427 ~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~~~~~~~~ 496 (657)
.+...|+.|..+|+ +.++|||||.||.+||..||+++++++.++ .+|+|||+.||..|.+......
T Consensus 7 ~~~~~C~~C~~~F~-~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g---~~~~RVC~~C~~~l~~~~~~~~ 72 (88)
T 1wfk_A 7 GMESRCYGCAVKFT-LFKKEYGCKNCGRAFCNGCLSFSALVPRAG---NTQQKVCKQCHTILTRGSSDNA 72 (88)
T ss_dssp CCCSBCTTTCCBCC-SSSCEEECSSSCCEEETTTSCEEEEETTTT---SEEEEECHHHHHHHHHCCCCCC
T ss_pred CcCCCCcCcCCccc-CccccccCCCCCCEEChhHcCCceeccccC---CCcCEECHHHHHHHHhcccccc
Confidence 45678999999999 556779999999999999999999998776 4899999999999998765433
No 17
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=99.46 E-value=1.6e-14 Score=122.08 Aligned_cols=69 Identities=32% Similarity=0.815 Sum_probs=60.5
Q ss_pred eeccccccCcccCCCCCCCCCcccccccccccccceeeccCCCccccccccCCCCCCCeeeCcchHHhhhcccc
Q 006205 420 LHKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTFD 493 (657)
Q Consensus 420 ~~kwv~~~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~~~~~ 493 (657)
...|+++.+...|..|..+|+ +.++||||+.||.+||..|+.+++.++.+ .+|+|||+.||..|.+...
T Consensus 11 ~p~W~~d~~~~~C~~C~~~F~-~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~----~~~~RVC~~C~~~l~~~~~ 79 (90)
T 3t7l_A 11 QPTWVPDSEAPNCMNCQVKFT-FTKRRHHCRACGKVFCGVCCNRKCKLQYL----EKEARVCVVCYETISKAQA 79 (90)
T ss_dssp CCCCCCGGGCCBCTTTCCBCC-SSSCCEECTTTCCEECGGGSCEEEEETTT----TEEEEECHHHHHHHHHHC-
T ss_pred CCcCcccccCCcCcCCCCccc-chhhCccccCCCCEECCcccCCeeecCCC----CCCCeECHHHHHHHHHHhh
Confidence 457999999999999999999 56667999999999999999999877643 4899999999999988665
No 18
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=99.45 E-value=2.7e-14 Score=128.28 Aligned_cols=65 Identities=42% Similarity=0.957 Sum_probs=58.0
Q ss_pred eeccccccCcccCCCCCCCCCcccccccccccccceeeccCCCccccccccCCCCCCCeeeCcchHHhhh
Q 006205 420 LHKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLR 489 (657)
Q Consensus 420 ~~kwv~~~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~ 489 (657)
...|+++.+...|+.|..+|+ +.++|||||.||.+||..||++++++|. ..+|+|||+.||..|+
T Consensus 60 ~~~W~~d~~~~~C~~C~~~Fs-~~~RrHHCR~CG~vfC~~Cs~~~~~~p~----~~~p~RVC~~C~~~l~ 124 (125)
T 1joc_A 60 NRKWAEDNEVQNCMACGKGFS-VTVRRHHCRQCGNIFCAECSAKNALTPS----SKKPVRVCDACFNDLQ 124 (125)
T ss_dssp HCCCCCGGGCCBCTTTCCBCC-SSSCCEECTTTCCEECGGGSCEEECCTT----CSSCEEECHHHHHHTT
T ss_pred CCccccCCCCCCCcCcCCccc-cccccccCCCCCeEEChHHhCCccccCC----CCCCCEeCHHHHHHhc
Confidence 357999999999999999999 6667799999999999999999987763 3699999999999885
No 19
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=99.43 E-value=2.8e-14 Score=115.85 Aligned_cols=66 Identities=30% Similarity=0.733 Sum_probs=55.9
Q ss_pred eeccccccCcccCCCCCCCCCcccccccccccccceeeccCCCccccccccCCCCCCCeeeCcchHHhhhcc
Q 006205 420 LHKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKT 491 (657)
Q Consensus 420 ~~kwv~~~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~~~ 491 (657)
...|+++ ..|+.|..+|+ +.++|||||.||++||..||+++++++.++. .+|+|||+.||..+...
T Consensus 5 ~p~W~~~---~~C~~C~~~F~-~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~--~~~~RVC~~C~~~l~~i 70 (73)
T 1vfy_A 5 PADWIDS---DACMICSKKFS-LLNRKHHCRSCGGVFCQEHSSNSIPLPDLGI--YEPVRVCDSCFEDYEFI 70 (73)
T ss_dssp --CCCCC---SBCTTTCCBCB-TTBCCEECTTTCCEECGGGSCEEEEEGGGTE--EEEEEECHHHHHHHHHH
T ss_pred CCcCccC---CcccCCCCccC-CccccccCCCCCEEEcccccCCeEEcccCCC--CCCCEECHHHHHHHHHH
Confidence 4568875 48999999999 5667799999999999999999999987764 48999999999998653
No 20
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=99.29 E-value=6.1e-13 Score=132.34 Aligned_cols=68 Identities=34% Similarity=0.852 Sum_probs=56.6
Q ss_pred eeccccccCcccCCCCCCCCCcccccccccccccceeeccCCCccccccccCCCCCCCeeeCcchHHhhhcccc
Q 006205 420 LHKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTFD 493 (657)
Q Consensus 420 ~~kwv~~~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~~~~~ 493 (657)
...|+++ ..|..|..+|+ +.++|||||+||.+||..||+++..+|.++. .+|+|||+.||..|.+..+
T Consensus 158 ~p~W~~~---~~C~~C~~~F~-~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~--~~~~RVC~~C~~~l~~~~e 225 (226)
T 3zyq_A 158 APDWVDA---EECHRCRVQFG-VMTRKHHCRACGQIFCGKCSSKYSTIPKFGI--EKEVRVCEPCYEQLNRKAE 225 (226)
T ss_dssp CCCCCCC---SBCTTTCCBCB-TTBCCEECTTTCCEECTTTCCEEEEEGGGTE--EEEEEECHHHHHHHCC---
T ss_pred ccccccC---CCCcCcCCCCC-ccccccccCCCcCEeChhhcCCcccCCCCCC--CCCCEeCHHHHHHhhhhcc
Confidence 4568764 58999999999 6667799999999999999999999887654 5899999999999987665
No 21
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=99.25 E-value=1.3e-12 Score=129.77 Aligned_cols=65 Identities=38% Similarity=0.989 Sum_probs=56.4
Q ss_pred eeccccccCcccCCCCCCCCCcccccccccccccceeeccCCCccccccccCCCCCCCeeeCcchHHhhhc
Q 006205 420 LHKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRK 490 (657)
Q Consensus 420 ~~kwv~~~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~~ 490 (657)
...|+++ ..|..|..+|+ +.++|||||.||.+||..||+++.++|.++. .+|+|||+.||..|.+
T Consensus 155 ~~~W~~~---~~C~~C~~~F~-~~~rrhhCr~CG~v~C~~Cs~~~~~~~~~~~--~~~~RvC~~C~~~l~~ 219 (220)
T 1dvp_A 155 APNWADG---RVCHRCRVEFT-FTNRKHHCRNCGQVFCGQCTAKQCPLPKYGI--EKEVRVCDGCFAALQR 219 (220)
T ss_dssp CCCCCCC---SBCTTTCCBCC-SSSCCEECTTTCCEECSTTSCEEEEEGGGTE--EEEEEECHHHHHHHHH
T ss_pred cccCCCC---CccCCCCCccC-CcccccccCCcCCEEChHHhCCeeecCcCCC--CCCCEeCHHHHHHHhc
Confidence 4568864 68999999999 6677799999999999999999999887654 5899999999999864
No 22
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=99.22 E-value=2.5e-12 Score=113.58 Aligned_cols=58 Identities=22% Similarity=0.454 Sum_probs=43.1
Q ss_pred cccccCcccCCCCCCCCCcccccccccccccceeeccCCCccccccccCCCCCCCeeeCcchHHhhhcc
Q 006205 423 WVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKT 491 (657)
Q Consensus 423 wv~~~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~~~ 491 (657)
|.++.+...|+.|..+|+ +.++|||||+||.+||..||+++++ ++|||+.||..+...
T Consensus 13 ~~Pd~~~~~C~~C~~~Fs-~~~RkHHCR~CG~ifC~~Cs~~~~~----------~vRVC~~C~~~~~~~ 70 (120)
T 1y02_A 13 PSPTGLEPSCKSCGAHFA-NTARKQTCLDCKKNFCMTCSSQVGN----------GPRLCLLCQRFRATA 70 (120)
T ss_dssp -------CCCTTTCCCCS-SGGGCEECTTTCCEECGGGEEC--------------CCEEHHHHHHHHTT
T ss_pred CcCccccCcccCcCCccc-cccccccCCCCCCeeCHHHhCCCCC----------CceECHHHHHHHhcc
Confidence 778888899999999999 6667799999999999999999863 389999999987653
No 23
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=99.03 E-value=2.6e-11 Score=132.84 Aligned_cols=68 Identities=31% Similarity=0.710 Sum_probs=0.0
Q ss_pred eeccccccCcccCCCCCCCCCcccccccccccccceeeccCCCccccccccCCCCCCCeeeCcchHHhhhcc
Q 006205 420 LHKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKT 491 (657)
Q Consensus 420 ~~kwv~~~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~~~ 491 (657)
...|+++.+...|..|..+|+ +.+++|||+.||.+||..||+++++++... .+|+|||+.||..|.+.
T Consensus 366 ~p~w~~~~~~~~c~~c~~~f~-~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~---~~~~rvC~~C~~~l~~~ 433 (434)
T 3mpx_A 366 PPTLVPVTHVMMCMNCGCDFS-LTLRRHHCHACGKIVCRNCSRNKYPLKYLK---DRMAKVCDGCFGELKKR 433 (434)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CCcCCCcccCCcCCCcCCCCC-CcchhhhcccCcCEeehhhCCCeeeCCCCC---CCcCEecHHHHHHHHhC
Confidence 467999999999999999999 666779999999999999999998876433 58999999999998653
No 24
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=95.44 E-value=3.2 Score=43.72 Aligned_cols=241 Identities=8% Similarity=0.019 Sum_probs=131.7
Q ss_pred CCeEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeCCceEEEEEcCCcEEEEcCC
Q 006205 76 LDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDG 155 (657)
Q Consensus 76 ~~I~~Ia~G~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n 155 (657)
..|..++......+.-..||.|..|-....-.+ ..+. .....|..++......+.-..||.|+.|-..
T Consensus 174 ~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~-----------~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~ 241 (435)
T 1p22_A 174 GSVLCLQYDERVIITGSSDSTVRVWDVNTGEML-----------NTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 241 (435)
T ss_dssp SCEEEEECCSSEEEEEETTSCEEEEESSSCCEE-----------EEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEECS
T ss_pred CcEEEEEECCCEEEEEcCCCeEEEEECCCCcEE-----------EEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCC
Confidence 357788887777777788999999975432111 1111 1234688888877888888899999999544
Q ss_pred CCCCCccCCCCCcceeeeeeecCCCCCceEEEEeeCCceEEEEecCCcEEEEecCCCCccCCCCCcccccceeeeccCCC
Q 006205 156 TYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGL 235 (657)
Q Consensus 156 ~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~ 235 (657)
.. . . ......+.. ....|..++....+.+.-..+|.|..|-..+. + ....+.. ...
T Consensus 242 ~~--~------~--~~~~~~~~~--~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~-~----------~~~~~~~-~~~ 297 (435)
T 1p22_A 242 SP--T------D--ITLRRVLVG--HRAAVNVVDFDDKYIVSASGDRTIKVWNTSTC-E----------FVRTLNG-HKR 297 (435)
T ss_dssp SS--S------C--CEEEEEECC--CSSCEEEEEEETTEEEEEETTSEEEEEETTTC-C----------EEEEEEC-CSS
T ss_pred CC--C------C--ceeeeEecC--CCCcEEEEEeCCCEEEEEeCCCeEEEEECCcC-c----------EEEEEcC-CCC
Confidence 11 0 0 001111111 23357777777777788888999999964321 0 0111111 122
Q ss_pred eEEEEEeCCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeecCCCCeEEEEccCcEEEEEe
Q 006205 236 RTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALT 315 (657)
Q Consensus 236 ~I~~Ia~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~~~~i~~I~~G~~~t~aLt 315 (657)
.|..++......+.-. .+|.|..|-..... ....+. .....|..++....+.+.-.
T Consensus 298 ~v~~~~~~~~~l~~g~------------~dg~i~iwd~~~~~-----------~~~~~~-~h~~~v~~~~~~~~~l~sg~ 353 (435)
T 1p22_A 298 GIACLQYRDRLVVSGS------------SDNTIRLWDIECGA-----------CLRVLE-GHEELVRCIRFDNKRIVSGA 353 (435)
T ss_dssp CEEEEEEETTEEEEEE------------TTSCEEEEETTTCC-----------EEEEEC-CCSSCEEEEECCSSEEEEEE
T ss_pred cEEEEEeCCCEEEEEe------------CCCeEEEEECCCCC-----------EEEEEe-CCcCcEEEEEecCCEEEEEe
Confidence 4555555444333333 68999999653210 001111 12245667777666667778
Q ss_pred cCCcEEEEeCCCCCCCCCCCCCCCcceeeccccCCCCEEEEEEccccccccccCCeEEEEecCC
Q 006205 316 TSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGA 379 (657)
Q Consensus 316 ~~G~Vy~wG~n~~GqLG~~~~~~~~p~~v~~~l~~~~V~~Ia~G~~ht~aLt~~G~vy~WG~n~ 379 (657)
.||.|..|-............ ......+. -....|..++......+.-..||.|..|-...
T Consensus 354 ~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~--~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 354 YDGKIKVWDLVAALDPRAPAG-TLCLRTLV--EHSGRVFRLQFDEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp TTSCEEEEEHHHHTSTTSCTT-TTEEEEEC--CCSSCCCCEEECSSCEEECCSSSEEEEEC---
T ss_pred CCCcEEEEECCCCCCcccccc-chheeecc--CCCCCeEEEEeCCCEEEEEeCCCEEEEEECCC
Confidence 899999996422111100000 00011111 12234666666555666666799999996543
No 25
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.95 E-value=2.6 Score=48.11 Aligned_cols=63 Identities=19% Similarity=0.128 Sum_probs=33.3
Q ss_pred CceEEEEEc-CCcEEEEcCCCCCCCccCCCCCcceeeeeeecCCCCCceEEEE----eeCCceEEEEecCCcEEEEec
Q 006205 137 EYHTCAVTL-SGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSI----SCGPWHTAVVTSAGQLFTFGD 209 (657)
Q Consensus 137 ~~hs~aLt~-dG~Vy~wG~n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~I----a~G~~hs~~Lt~~G~vy~wG~ 209 (657)
..|++++.. +|+||.+|-.......+ +....+-|. ......+ ..-..|++++..+|+||.+|-
T Consensus 441 ~~hs~~~~~~~~~lyv~GG~~~~~~~~---~dv~~yd~~-------t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG 508 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGGRKAPHQGL---SDNWIFDMK-------TREWSMIKSLSHTRFRHSACSLPDGNVLILGG 508 (695)
T ss_dssp BSCEEEEETTTTEEEEECCBSSTTCBC---CCCEEEETT-------TTEEEECCCCSBCCBSCEEEECTTSCEEEECC
T ss_pred cceEEEEEccCCEEEEEcCCCCCCCcc---ccEEEEeCC-------CCcEEECCCCCCCcccceEEEEcCCEEEEECC
Confidence 468888776 99999998542111111 111111110 0011111 123467777766899999983
No 26
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=94.51 E-value=0.014 Score=62.75 Aligned_cols=43 Identities=16% Similarity=0.413 Sum_probs=35.9
Q ss_pred ccccccCcccCCCCCCCCCcccccccccccccceeeccCCCcc
Q 006205 422 KWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKK 464 (657)
Q Consensus 422 kwv~~~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~ 464 (657)
.|.+......|..|+..|.-+.+++|||+.||.++|..|+.+-
T Consensus 350 ~~~~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~ 392 (406)
T 2vrw_B 350 QMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRV 392 (406)
T ss_dssp EEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGS
T ss_pred ccccCCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhC
Confidence 3567788899999999984356667999999999999999854
No 27
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=93.82 E-value=0.094 Score=51.31 Aligned_cols=68 Identities=16% Similarity=0.259 Sum_probs=57.6
Q ss_pred CeEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeCCceEEEEEcCCcEEEEcCCC
Q 006205 77 DVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGT 156 (657)
Q Consensus 77 ~I~~Ia~G~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n~ 156 (657)
.|-+|+--..|..++--+++++.+|.+++||+-..... ..+.++.+|.++++-+..-..+-.||+..
T Consensus 310 ~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~ta-------------gPfla~~AG~~fTVTVn~~nyv~FWGDSP 376 (400)
T 4gbf_A 310 PIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHA-------------GPYIQLAAGHNFTVTVNTLNQVMFWGDSP 376 (400)
T ss_dssp CCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGG-------------CCEEEEEECSSEEEEEETTCCEEEEECCT
T ss_pred ccccccccccceEEEecCceeEEeccCCCCceecCCCc-------------chHHhHhccCCeEEEEeceeeEEEecCCC
Confidence 57788888999999999999999999999998543221 26889999999999999999999999875
Q ss_pred C
Q 006205 157 Y 157 (657)
Q Consensus 157 ~ 157 (657)
.
T Consensus 377 D 377 (400)
T 4gbf_A 377 D 377 (400)
T ss_dssp T
T ss_pred C
Confidence 4
No 28
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=92.98 E-value=6.9 Score=44.06 Aligned_cols=73 Identities=16% Similarity=0.147 Sum_probs=39.2
Q ss_pred CcEEEEEecCCcEEEEeCCCCCCCCCCCCCCCcceeeccccCCCCEEEEEE----ccccc-cccccCCeEEEEecCCCCC
Q 006205 308 HSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIAC----GSYHV-AVLTSKTEVYTWGKGANGR 382 (657)
Q Consensus 308 ~~~t~aLt~~G~Vy~wG~n~~GqLG~~~~~~~~p~~v~~~l~~~~V~~Ia~----G~~ht-~aLt~~G~vy~WG~n~~Gq 382 (657)
..|++++..+|+||++|-...+..-........+.... +.......+.. -.+|+ +++..+|+||..|.+.++.
T Consensus 457 ~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~yd--p~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~~ 534 (656)
T 1k3i_A 457 TFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYV--PEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGD 534 (656)
T ss_dssp BSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEE--GGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTT
T ss_pred ccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEc--CCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCCC
Confidence 35777777899999999654442111111011111111 11222333321 24675 4566899999999876653
No 29
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=92.92 E-value=0.15 Score=49.85 Aligned_cols=71 Identities=24% Similarity=0.317 Sum_probs=57.5
Q ss_pred eEEEEeeCCceEEEEecCCcEEEEecCCCCccCCCCCcccccceeeeccCCCeEEEEEeCCCeeEEEEEeeecCCCcccc
Q 006205 184 HVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNC 263 (657)
Q Consensus 184 ~I~~Ia~G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Ia~G~~hs~al~e~~~~~s~~~~~ 263 (657)
+|-.|+--..|..++--+++||.||+++.||+-..+.. -+...+++|..+++-+.
T Consensus 310 ~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~ta-------------gPfla~~AG~~fTVTVn------------ 364 (400)
T 4gbf_A 310 PIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHA-------------GPYIQLAAGHNFTVTVN------------ 364 (400)
T ss_dssp CCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGG-------------CCEEEEEECSSEEEEEE------------
T ss_pred ccccccccccceEEEecCceeEEeccCCCCceecCCCc-------------chHHhHhccCCeEEEEe------------
Confidence 57788989999999999999999999999998543221 25788999999999987
Q ss_pred CCCcEEEEcCCCCCCC
Q 006205 264 SSGKLFTWGDGDKGRL 279 (657)
Q Consensus 264 ~~G~ly~wG~n~~gqL 279 (657)
.-+.+-.||+....-|
T Consensus 365 ~~nyv~FWGDSPDNSL 380 (400)
T 4gbf_A 365 TLNQVMFWGDSPDNSL 380 (400)
T ss_dssp TTCCEEEEECCTTSTT
T ss_pred ceeeEEEecCCCCcce
Confidence 5889999998655443
No 30
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.19 E-value=7.6 Score=44.24 Aligned_cols=18 Identities=33% Similarity=0.364 Sum_probs=14.6
Q ss_pred CceEEEEec-CCcEEEEec
Q 006205 192 PWHTAVVTS-AGQLFTFGD 209 (657)
Q Consensus 192 ~~hs~~Lt~-~G~vy~wG~ 209 (657)
..|++++.. +|+||.+|-
T Consensus 441 ~~hs~~~~~~~~~lyv~GG 459 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGG 459 (695)
T ss_dssp BSCEEEEETTTTEEEEECC
T ss_pred cceEEEEEccCCEEEEEcC
Confidence 368888876 899999983
No 31
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=91.30 E-value=16 Score=38.20 Aligned_cols=227 Identities=11% Similarity=0.040 Sum_probs=131.0
Q ss_pred CeEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeCCceEEEEEcCCcEEEEcCCC
Q 006205 77 DVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGT 156 (657)
Q Consensus 77 ~I~~Ia~G~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n~ 156 (657)
.|..++......+.-..||.|+.|-....-. ...+. .....|..++......+.-..||.|+.|-...
T Consensus 161 ~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-----------~~~~~-~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~ 228 (445)
T 2ovr_B 161 GVWSSQMRDNIIISGSTDRTLKVWNAETGEC-----------IHTLY-GHTSTVRCMHLHEKRVVSGSRDATLRVWDIET 228 (445)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTTTEE-----------EEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEESSS
T ss_pred CEEEEEecCCEEEEEeCCCeEEEEECCcCcE-----------EEEEC-CCCCcEEEEEecCCEEEEEeCCCEEEEEECCC
Confidence 4677777777777788899999997543211 11111 12336777777777788888999999995441
Q ss_pred CCCCccCCCCCcceeeeeeecCCCCCceEEEEeeCCceEEEEecCCcEEEEecCCCCccCCCCCcccccceeeecc--CC
Q 006205 157 YNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESL--KG 234 (657)
Q Consensus 157 ~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l--~~ 234 (657)
+. ....+.. ....|..++......+.-..+|.|+.|-... ...+..+ ..
T Consensus 229 ---~~----------~~~~~~~--~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~--------------~~~~~~~~~~~ 279 (445)
T 2ovr_B 229 ---GQ----------CLHVLMG--HVAAVRCVQYDGRRVVSGAYDFMVKVWDPET--------------ETCLHTLQGHT 279 (445)
T ss_dssp ---CC----------EEEEEEC--CSSCEEEEEECSSCEEEEETTSCEEEEEGGG--------------TEEEEEECCCS
T ss_pred ---Cc----------EEEEEcC--CcccEEEEEECCCEEEEEcCCCEEEEEECCC--------------CcEeEEecCCC
Confidence 11 0111111 2235667776667777778899999995321 1112111 12
Q ss_pred CeEEEEEeCCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeecCCCCeEEEEccCcEEEEE
Q 006205 235 LRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVAL 314 (657)
Q Consensus 235 ~~I~~Ia~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~~~~i~~I~~G~~~t~aL 314 (657)
..|..++....+.+.-. .+|.|+.|-...... ...+. .....+..+.......+.-
T Consensus 280 ~~v~~~~~~~~~l~~~~------------~d~~i~i~d~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~l~~~ 335 (445)
T 2ovr_B 280 NRVYSLQFDGIHVVSGS------------LDTSIRVWDVETGNC-----------IHTLT-GHQSLTSGMELKDNILVSG 335 (445)
T ss_dssp SCEEEEEECSSEEEEEE------------TTSCEEEEETTTCCE-----------EEEEC-CCCSCEEEEEEETTEEEEE
T ss_pred CceEEEEECCCEEEEEe------------CCCeEEEEECCCCCE-----------EEEEc-CCcccEEEEEEeCCEEEEE
Confidence 35666666444433333 689999996533110 00111 1123455555556666777
Q ss_pred ecCCcEEEEeCCCCCCCCCCCCCCCcceeeccc-cCCCCEEEEEEccccccccccCCeEEEEecC
Q 006205 315 TTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGK-LSKSFVEEIACGSYHVAVLTSKTEVYTWGKG 378 (657)
Q Consensus 315 t~~G~Vy~wG~n~~GqLG~~~~~~~~p~~v~~~-l~~~~V~~Ia~G~~ht~aLt~~G~vy~WG~n 378 (657)
..||.|+.|-.... .....+... .....|..++....+.+.-..+|.|..|-..
T Consensus 336 ~~dg~i~vwd~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 336 NADSTVKIWDIKTG----------QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp ETTSCEEEEETTTC----------CEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred eCCCeEEEEECCCC----------cEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECC
Confidence 78999999974321 111111110 1234577788776666667789999999643
No 32
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=89.59 E-value=0.2 Score=44.77 Aligned_cols=56 Identities=20% Similarity=0.453 Sum_probs=44.2
Q ss_pred cCcccCCCCCCCCCcccccccccccccceeeccCCCccccccccCCCCCCCeeeCcchHHhh
Q 006205 427 VDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKL 488 (657)
Q Consensus 427 ~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~ 488 (657)
.+...|..|..+|+.+....+-|..|...+|..|...... ...++.=+|..|+..-
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~------~~~~~~W~C~vC~k~r 108 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSN------NRPHPVWLCKICLEQR 108 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCC------SSSSCCEEEHHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCC------CCCccceechhhHHHH
Confidence 4668899999999845455689999999999999876421 1257789999999863
No 33
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=89.04 E-value=6.7 Score=44.16 Aligned_cols=18 Identities=28% Similarity=0.532 Sum_probs=14.9
Q ss_pred CCeEEEEEcCCcEEEEeC
Q 006205 85 GRHAALVNKQGEVFSWGE 102 (657)
Q Consensus 85 ~~h~~~lt~~G~Vy~wG~ 102 (657)
..|++++..+|+||++|-
T Consensus 288 ~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 288 GYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp SSCEEEECTTSCEEEECC
T ss_pred cccceEEecCCeEEEEeC
Confidence 457777777999999996
No 34
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=87.90 E-value=28 Score=36.20 Aligned_cols=229 Identities=7% Similarity=0.006 Sum_probs=132.6
Q ss_pred CeEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeCCceEEEEEcCCcEEEEcCCC
Q 006205 77 DVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGT 156 (657)
Q Consensus 77 ~I~~Ia~G~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n~ 156 (657)
.|..++..+.+.+.-..+|.|..|-....-. ...+. .....|..++......+.-..||.|+.|-...
T Consensus 135 ~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~-----------~~~~~-~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRDNTIKIWDKNTLEC-----------KRILT-GHTGSVLCLQYDERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp CEEEEECCSSEEEEEESSSCEEEEESSSCCE-----------EEEEC-CCSSCEEEEECCSSEEEEEETTSCEEEEESSS
T ss_pred cEEEEEECCCEEEEEeCCCeEEEEeCCCCeE-----------EEEEc-CCCCcEEEEEECCCEEEEEcCCCeEEEEECCC
Confidence 4777888778888888999999996433111 11111 12346778877666777778899999996541
Q ss_pred CCCCccCCCCCcceeeeeeecCCCCCceEEEEeeCCceEEEEecCCcEEEEecCCCCccCCCCCcccccceeeeccCCCe
Q 006205 157 YNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLR 236 (657)
Q Consensus 157 ~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~ 236 (657)
+. ....+.. ....|..++......+.-..+|.|+.|-...... ........-....
T Consensus 203 ---~~----------~~~~~~~--h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~---------~~~~~~~~~~~~~ 258 (435)
T 1p22_A 203 ---GE----------MLNTLIH--HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD---------ITLRRVLVGHRAA 258 (435)
T ss_dssp ---CC----------EEEEECC--CCSCEEEEECCTTEEEEEETTSCEEEEECSSSSC---------CEEEEEECCCSSC
T ss_pred ---Cc----------EEEEEcC--CCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCC---------ceeeeEecCCCCc
Confidence 11 0111211 2345888887777788888999999995432111 0011111112234
Q ss_pred EEEEEeCCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeecCCCCeEEEEccCcEEEEEec
Q 006205 237 TVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTT 316 (657)
Q Consensus 237 I~~Ia~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~~~~i~~I~~G~~~t~aLt~ 316 (657)
|..++....+.+... .+|.|..|-..... ....+. .....|..+.......+.-..
T Consensus 259 v~~~~~~~~~l~s~~------------~dg~i~vwd~~~~~-----------~~~~~~-~~~~~v~~~~~~~~~l~~g~~ 314 (435)
T 1p22_A 259 VNVVDFDDKYIVSAS------------GDRTIKVWNTSTCE-----------FVRTLN-GHKRGIACLQYRDRLVVSGSS 314 (435)
T ss_dssp EEEEEEETTEEEEEE------------TTSEEEEEETTTCC-----------EEEEEE-CCSSCEEEEEEETTEEEEEET
T ss_pred EEEEEeCCCEEEEEe------------CCCeEEEEECCcCc-----------EEEEEc-CCCCcEEEEEeCCCEEEEEeC
Confidence 666665444433333 68999999653211 011111 122456666666667777788
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCcceeeccccCCCCEEEEEEccccccccccCCeEEEEec
Q 006205 317 SGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGK 377 (657)
Q Consensus 317 ~G~Vy~wG~n~~GqLG~~~~~~~~p~~v~~~l~~~~V~~Ia~G~~ht~aLt~~G~vy~WG~ 377 (657)
||.|..|-.... .....+. .....|..++......+.-..+|.|..|-.
T Consensus 315 dg~i~iwd~~~~----------~~~~~~~--~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 315 DNTIRLWDIECG----------ACLRVLE--GHEELVRCIRFDNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp TSCEEEEETTTC----------CEEEEEC--CCSSCEEEEECCSSEEEEEETTSCEEEEEH
T ss_pred CCeEEEEECCCC----------CEEEEEe--CCcCcEEEEEecCCEEEEEeCCCcEEEEEC
Confidence 999999975321 1111111 123447777776666666678999999964
No 35
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=87.17 E-value=0.28 Score=44.92 Aligned_cols=52 Identities=29% Similarity=0.788 Sum_probs=42.8
Q ss_pred CcccCCCCCCCCCcccccccccccccceeeccCCCccccccccCCCCCCCeeeCcchHHhh
Q 006205 428 DQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKL 488 (657)
Q Consensus 428 d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~ 488 (657)
+...|..|..+|+.+....+-|..|...+|..|.... + ..+.=+|..|+..-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~-------~--~~~~W~C~vC~k~r 118 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAH-------P--EEQGWLCDPCHLAR 118 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECC-------S--SSSSCEEHHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccccc-------C--CCCcEeeHHHHHHH
Confidence 5688999999999666677999999999999998321 1 36789999999873
No 36
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=85.69 E-value=28 Score=35.23 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=13.1
Q ss_pred CceEEEEecCCcEEEEec
Q 006205 192 PWHTAVVTSAGQLFTFGD 209 (657)
Q Consensus 192 ~~hs~~Lt~~G~vy~wG~ 209 (657)
..|++++ .+++||.+|-
T Consensus 110 ~~~~~~~-~~~~iyv~GG 126 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTGG 126 (357)
T ss_dssp SSEEEEE-ETTEEEEEEC
T ss_pred ccceEEE-ECCEEEEEeC
Confidence 4576666 7889999993
No 37
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=85.45 E-value=37 Score=35.22 Aligned_cols=225 Identities=8% Similarity=-0.008 Sum_probs=127.7
Q ss_pred eEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeCCceEEEEEcCCcEEEEcCCCC
Q 006205 78 VQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTY 157 (657)
Q Consensus 78 I~~Ia~G~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n~~ 157 (657)
+..++..+...+.-..||.|..|-......+ ..+. .....|..++......+.-..||.|+.|-...
T Consensus 122 ~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~-----------~~~~-~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~- 188 (445)
T 2ovr_B 122 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCL-----------RTLV-GHTGGVWSSQMRDNIIISGSTDRTLKVWNAET- 188 (445)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTCCEE-----------EECC-CCSSCEEEEEEETTEEEEEETTSCEEEEETTT-
T ss_pred EEEEEEcCCEEEEEECCCcEEEEECCCCcEE-----------EEEc-CCCCCEEEEEecCCEEEEEeCCCeEEEEECCc-
Confidence 4566666777777888999999975432111 1111 11235777776677777788899999995441
Q ss_pred CCCccCCCCCcceeeeeeecCCCCCceEEEEeeCCceEEEEecCCcEEEEecCCCCccCCCCCcccccceeeeccCCCeE
Q 006205 158 NFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRT 237 (657)
Q Consensus 158 ~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I 237 (657)
+. ....+.. ....|..++......+.-+.+|.|+.|-...... ...+. .....|
T Consensus 189 --~~----------~~~~~~~--h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-----------~~~~~-~~~~~v 242 (445)
T 2ovr_B 189 --GE----------CIHTLYG--HTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC-----------LHVLM-GHVAAV 242 (445)
T ss_dssp --TE----------EEEEECC--CSSCEEEEEEETTEEEEEETTSEEEEEESSSCCE-----------EEEEE-CCSSCE
T ss_pred --Cc----------EEEEECC--CCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcE-----------EEEEc-CCcccE
Confidence 11 1112221 2335777777777778888899999995432100 01111 112245
Q ss_pred EEEEeCCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeecCCCCeEEEEccCcEEEEEecC
Q 006205 238 VRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTS 317 (657)
Q Consensus 238 ~~Ia~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~~~~i~~I~~G~~~t~aLt~~ 317 (657)
..++......++.. .+|.|+.|-.... .....+ ......|..+.....+.+.-..|
T Consensus 243 ~~~~~~~~~l~~~~------------~dg~i~iwd~~~~-----------~~~~~~-~~~~~~v~~~~~~~~~l~~~~~d 298 (445)
T 2ovr_B 243 RCVQYDGRRVVSGA------------YDFMVKVWDPETE-----------TCLHTL-QGHTNRVYSLQFDGIHVVSGSLD 298 (445)
T ss_dssp EEEEECSSCEEEEE------------TTSCEEEEEGGGT-----------EEEEEE-CCCSSCEEEEEECSSEEEEEETT
T ss_pred EEEEECCCEEEEEc------------CCCEEEEEECCCC-----------cEeEEe-cCCCCceEEEEECCCEEEEEeCC
Confidence 55555333333332 6899999953221 001111 11224566777666677777889
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcceeeccccCCCCEEEEEEccccccccccCCeEEEEec
Q 006205 318 GHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGK 377 (657)
Q Consensus 318 G~Vy~wG~n~~GqLG~~~~~~~~p~~v~~~l~~~~V~~Ia~G~~ht~aLt~~G~vy~WG~ 377 (657)
|.|+.|-..... ....+. .....+..++......+.-..+|.|+.|=.
T Consensus 299 ~~i~i~d~~~~~----------~~~~~~--~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~ 346 (445)
T 2ovr_B 299 TSIRVWDVETGN----------CIHTLT--GHQSLTSGMELKDNILVSGNADSTVKIWDI 346 (445)
T ss_dssp SCEEEEETTTCC----------EEEEEC--CCCSCEEEEEEETTEEEEEETTSCEEEEET
T ss_pred CeEEEEECCCCC----------EEEEEc--CCcccEEEEEEeCCEEEEEeCCCeEEEEEC
Confidence 999999753211 111111 122346666666666666678999999964
No 38
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=84.53 E-value=66 Score=38.54 Aligned_cols=58 Identities=9% Similarity=0.215 Sum_probs=32.8
Q ss_pred CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeC-CceEEEEEcCCcEEEEcCC
Q 006205 85 GRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACG-EYHTCAVTLSGDLYTWGDG 155 (657)
Q Consensus 85 ~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G-~~hs~aLt~dG~Vy~wG~n 155 (657)
+...+....||.|..|-......+ .+. .....|..++.. ....++...+|.|+.|-..
T Consensus 1015 g~~l~s~~~dg~i~vwd~~~~~~~------------~~~-~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~ 1073 (1249)
T 3sfz_A 1015 GKTLISSSEDSVIQVWNWQTGDYV------------FLQ-AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVI 1073 (1249)
T ss_dssp SSCEEEECSSSBEEEEETTTTEEE------------CCB-CCSSCEEEEEECSSSEEEEEESSSEEEEEETT
T ss_pred CCEEEEEcCCCEEEEEECCCCceE------------EEe-cCCCcEEEEEEcCCCcEEEEECCCcEEEEECC
Confidence 345555667899999975432111 011 112245555433 3455667788999999654
No 39
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=81.58 E-value=50 Score=33.75 Aligned_cols=108 Identities=10% Similarity=0.034 Sum_probs=62.5
Q ss_pred CeEEEEec--CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeCCceEEEEEcCCcEEEEcC
Q 006205 77 DVQNIACG--GRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGD 154 (657)
Q Consensus 77 ~I~~Ia~G--~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~ 154 (657)
.|..|+.. +.+.++-..+|.|..|-...... ...+. .....|..++......+.-..+|.|+.|-.
T Consensus 136 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~ 203 (401)
T 4aez_A 136 YVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK-----------LRTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDV 203 (401)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----------EEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEET
T ss_pred CEEEEEECCCCCEEEEECCCCeEEEEECcCCeE-----------EEEec-CCCCceEEEEECCCEEEEEcCCCCEEEEec
Confidence 46666653 44566667889999997543211 11111 123467788877777778888999999965
Q ss_pred CCCCCCccCCCCCcceeeeeeecCCCCCceEEEEeeC--CceEEEEecCCcEEEEecC
Q 006205 155 GTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCG--PWHTAVVTSAGQLFTFGDG 210 (657)
Q Consensus 155 n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~G--~~hs~~Lt~~G~vy~wG~n 210 (657)
.. .+. ....+.. ....|..++.. ..+.+.-+.+|.|+.|-..
T Consensus 204 ~~--~~~----------~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 247 (401)
T 4aez_A 204 RI--ANH----------QIGTLQG--HSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR 247 (401)
T ss_dssp TS--SSC----------EEEEEEC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred cc--Ccc----------eeeEEcC--CCCCeeEEEEcCCCCEEEEEeCCCeEEEccCC
Confidence 41 110 0111111 12346555543 3455556678999999643
No 40
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=80.57 E-value=44 Score=32.45 Aligned_cols=273 Identities=10% Similarity=0.012 Sum_probs=130.0
Q ss_pred CccccCCCCcEEEEcCCCCCCccCCCCCCCccccccccccCCceeecccCCCCeEEEEecC-CeEEEEEcCCcEEEEeCC
Q 006205 25 GHDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGG-RHAALVNKQGEVFSWGEE 103 (657)
Q Consensus 25 ~~~~l~~~G~Vy~WG~n~~~G~LG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~I~~Ia~G~-~h~~~lt~~G~Vy~wG~n 103 (657)
...++..||++++++... ...+..... ........+. ....|..++... ...++...+|.|..|-..
T Consensus 13 ~~~~~s~dg~~~~~~~~~-~~~~~~~~~---------~~~~~~~~~~--h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~ 80 (337)
T 1gxr_A 13 YSFHVTADGQMQPVPFPP-DALIGPGIP---------RHARQINTLN--HGEVVCAVTISNPTRHVYTGGKGCVKVWDIS 80 (337)
T ss_dssp CEEEECSSSCEEECCCCT-TSSSSTTCC---------SEEEEEEEEC--CSSCCCEEEECSSSSEEEEECBSEEEEEETT
T ss_pred eEEEECCCCCEEEeecCC-CcEeccccC---------Cccccceecc--CCCceEEEEEecCCcEEEEcCCCeEEEEECC
Confidence 346778899999988876 444333220 0001111111 223455555432 223344448999999765
Q ss_pred CCCCcCCCCCCCcccceEecc-CCCCcEEEEEeCC--ceEEEEEcCCcEEEEcCCCCCCCccCCCCCcceeeeeeecCCC
Q 006205 104 SGGRLGHGVDSDVLHPKLIDA-LSNMNIELVACGE--YHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPL 180 (657)
Q Consensus 104 ~~GqLG~g~~~~~~~P~~v~~-l~~~~I~~Va~G~--~hs~aLt~dG~Vy~wG~n~~~~GqLG~~~~~~~~~P~~v~~~l 180 (657)
..... .....+.. -....|..++... ...++...+|.|+.|-... +. .. ....+..
T Consensus 81 ~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~---~~-------~~-~~~~~~~-- 139 (337)
T 1gxr_A 81 HPGNK--------SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA---PT-------PR-IKAELTS-- 139 (337)
T ss_dssp STTCC--------SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCC---C---------E-EEEEEEC--
T ss_pred CCCce--------eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCC---CC-------cc-eeeeccc--
Confidence 43211 01111110 1233566665543 3455556789999995441 10 00 1111111
Q ss_pred CCceEEEEeeC--CceEEEEecCCcEEEEecCCCCccCCCCCcccccceeeeccCCCeEEEEEeCCCeeEEEEEeeecCC
Q 006205 181 EGIHVSSISCG--PWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNS 258 (657)
Q Consensus 181 ~~~~I~~Ia~G--~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Ia~G~~hs~al~e~~~~~s 258 (657)
....|..++.. ..+.+.-+.+|.|+.|-..... ....+.. ....|..++.......+++-
T Consensus 140 ~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-----------~~~~~~~-~~~~i~~~~~~~~~~~l~~~------ 201 (337)
T 1gxr_A 140 SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-----------LVRQFQG-HTDGASCIDISNDGTKLWTG------ 201 (337)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----------EEEEECC-CSSCEEEEEECTTSSEEEEE------
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc-----------eeeeeec-ccCceEEEEECCCCCEEEEE------
Confidence 12345555543 3455666778999999533210 0111111 12346666654333222221
Q ss_pred CccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeecCCCCeEEEEc--cCcEEEEEecCCcEEEEeCCCCCCCCCCCC
Q 006205 259 SSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVAC--GHSLTVALTTSGHVYTMGSPVYGQLGNPQA 336 (657)
Q Consensus 259 ~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~~~~i~~I~~--G~~~t~aLt~~G~Vy~wG~n~~GqLG~~~~ 336 (657)
..+|.|+.|-..... ....+. ....+..++. .....++-..+|.|+.|-.....
T Consensus 202 ----~~dg~i~~~d~~~~~-----------~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~------- 257 (337)
T 1gxr_A 202 ----GLDNTVRSWDLREGR-----------QLQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD------- 257 (337)
T ss_dssp ----ETTSEEEEEETTTTE-----------EEEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC-------
T ss_pred ----ecCCcEEEEECCCCc-----------eEeeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC-------
Confidence 158899999643210 011111 1234444443 23344555677888888643211
Q ss_pred CCCcceeeccccCCCCEEEEEEccc--cccccccCCeEEEEecC
Q 006205 337 DGKLPNRVEGKLSKSFVEEIACGSY--HVAVLTSKTEVYTWGKG 378 (657)
Q Consensus 337 ~~~~p~~v~~~l~~~~V~~Ia~G~~--ht~aLt~~G~vy~WG~n 378 (657)
.... ......|..++.... ..+.-..+|.|+.|-..
T Consensus 258 ----~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 258 ----KYQL--HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp ----EEEE--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ----eEEE--cCCccceeEEEECCCCCEEEEecCCCcEEEEECC
Confidence 1111 122345777776543 34444578999999653
No 41
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=79.80 E-value=44 Score=32.05 Aligned_cols=186 Identities=12% Similarity=0.045 Sum_probs=99.3
Q ss_pred CCeEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEe---CCceEEEEEcCCcEEEE
Q 006205 76 LDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVAC---GEYHTCAVTLSGDLYTW 152 (657)
Q Consensus 76 ~~I~~Ia~G~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~---G~~hs~aLt~dG~Vy~w 152 (657)
..|..++......+....+|.|+.|-. + .+..........|..++. .....+....+|.|+.|
T Consensus 105 ~~i~~~~~~~~~l~~~~~d~~i~~~d~---~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~ 170 (313)
T 3odt_A 105 GNVCSLSFQDGVVISGSWDKTAKVWKE---G-----------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLW 170 (313)
T ss_dssp SCEEEEEEETTEEEEEETTSEEEEEET---T-----------EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred cCEEEEEecCCEEEEEeCCCCEEEEcC---C-----------cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEE
Confidence 467788887788888889999999951 1 111111112335555543 56667777889999999
Q ss_pred cCCCCCCCccCCCCCcceeeeeeecCCCCCceEEEEeeC-CceEEEEecCCcEEEEecCCCCccCCCCCcccccceeeec
Q 006205 153 GDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCG-PWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVES 231 (657)
Q Consensus 153 G~n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~G-~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~ 231 (657)
-.. . ....+.. .....|..++.. ....++...+|.|+.|-..... ....+..
T Consensus 171 d~~--------------~-~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~-----------~~~~~~~ 223 (313)
T 3odt_A 171 QND--------------K-VIKTFSG-IHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGD-----------VLRTYEG 223 (313)
T ss_dssp ETT--------------E-EEEEECS-SCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCC-----------EEEEEEC
T ss_pred ecC--------------c-eEEEEec-cCcccEEEEEEcCCCeEEEccCCCeEEEEECCchh-----------hhhhhhc
Confidence 422 0 0111111 122345554432 2236666788999999643210 0111111
Q ss_pred cCCCeEEEEEeCCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeecCCCCeEEEEccCc-E
Q 006205 232 LKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHS-L 310 (657)
Q Consensus 232 l~~~~I~~Ia~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~~~~i~~I~~G~~-~ 310 (657)
....|..++......++... .+|.|+.|-.... .+..........|..++.-.. .
T Consensus 224 -~~~~i~~~~~~~~~~l~~~~-----------~dg~v~iwd~~~~------------~~~~~~~~~~~~i~~~~~~~~~~ 279 (313)
T 3odt_A 224 -HESFVYCIKLLPNGDIVSCG-----------EDRTVRIWSKENG------------SLKQVITLPAISIWSVDCMSNGD 279 (313)
T ss_dssp -CSSCEEEEEECTTSCEEEEE-----------TTSEEEEECTTTC------------CEEEEEECSSSCEEEEEECTTSC
T ss_pred -CCceEEEEEEecCCCEEEEe-----------cCCEEEEEECCCC------------ceeEEEeccCceEEEEEEccCCC
Confidence 12356666655443333321 6899999964321 011111122335666654322 3
Q ss_pred EEEEecCCcEEEEeCC
Q 006205 311 TVALTTSGHVYTMGSP 326 (657)
Q Consensus 311 t~aLt~~G~Vy~wG~n 326 (657)
.++-..||.|+.|-..
T Consensus 280 ~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 280 IIVGSSDNLVRIFSQE 295 (313)
T ss_dssp EEEEETTSCEEEEESC
T ss_pred EEEEeCCCcEEEEeCC
Confidence 5566788999999753
No 42
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=76.20 E-value=64 Score=31.94 Aligned_cols=231 Identities=9% Similarity=0.014 Sum_probs=123.5
Q ss_pred eEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEe--CCceEEEEEcCCcEEEEcCCCCCCCccCC
Q 006205 87 HAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVAC--GEYHTCAVTLSGDLYTWGDGTYNFGLLGH 164 (657)
Q Consensus 87 h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~--G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~ 164 (657)
-+++|+++|=|-.-- ||.. ++..+..+.. ...+.+++|++|++|.---. .+-.
T Consensus 3 vtvils~~Gwir~~~-------g~~~-------------~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~-----~lp~ 57 (276)
T 3no0_A 3 ITVAVLQDGSIIPVE-------ELPL-------------EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGS-----QALQ 57 (276)
T ss_dssp EEEEEETTSEEEEGG-------GCCS-------------SCCCEEEEEEEETTSCEEEEETTSEEEEECSH-----HHHT
T ss_pred EEEEEcCCceeeecc-------CCCC-------------CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhh-----hCcc
Confidence 367888888554321 2211 3445555543 34568899999999986422 1110
Q ss_pred CCCcceeeeeeecCCCCCceEEEEee---CCceEEEEecCCcEEEEecCCCCccCCCCCcccccceeeeccCCCeEEEEE
Q 006205 165 GNEVSHWVPKRVNGPLEGIHVSSISC---GPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAA 241 (657)
Q Consensus 165 ~~~~~~~~P~~v~~~l~~~~I~~Ia~---G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Ia 241 (657)
.. +. -+ ..++++|+.+.+ .....+++|.+|.+.-.-..++-+- . .-...+..-.+..++.+.
T Consensus 58 ~~----~~--~l--l~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~----~---~G~~~i~lkegD~l~~~~ 122 (276)
T 3no0_A 58 GS----KV--SL--KSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYK----A---QGMPIIKLTEGDEVVSIA 122 (276)
T ss_dssp SE----EC--CC--SSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTC----S---TTEECSCCCTTCCEEEEE
T ss_pred Cc----cc--cc--CCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhh----c---CCeEEEecCCCCEEEEEE
Confidence 00 00 02 235678888876 2357889999999888765544210 0 001111111233444443
Q ss_pred e--CCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeecCCCCeEEEEcc--CcEEEEEecC
Q 006205 242 C--GVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACG--HSLTVALTTS 317 (657)
Q Consensus 242 ~--G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~~~~i~~I~~G--~~~t~aLt~~ 317 (657)
. +..+.++++ ++|++|.+-..+.-.+|....-.. .+....+..|+.+... ....+++|++
T Consensus 123 ~~~~~~~ill~T------------~~G~~~r~~~~eip~~gR~a~Gv~----~i~L~~~d~vv~~~~~~~~~~ll~~T~~ 186 (276)
T 3no0_A 123 SSVDETHILLFT------------KKGRVARFSVREVPPSTPGARGVQ----GIKLEKNDETSGLRIWNGEPYLLVITAK 186 (276)
T ss_dssp ECCSSCEEEEEE------------TTSEEEEEEGGGSCBCCTTCCCEE----CCCCCTTCCEEEEEEESSCSEEEEEETT
T ss_pred EeCCCCEEEEEE------------CCCEEEEEEhhhCCCcCCCCCCEE----EEccCCCCEEEEEEEeCCCCEEEEEeCC
Confidence 3 334455555 799999987655444443322111 1222234566665433 3467788999
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCcceeeccccCCCCEEEEE--EccccccccccCCeEEE--EecCC
Q 006205 318 GHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIA--CGSYHVAVLTSKTEVYT--WGKGA 379 (657)
Q Consensus 318 G~Vy~wG~n~~GqLG~~~~~~~~p~~v~~~l~~~~V~~Ia--~G~~ht~aLt~~G~vy~--WG~n~ 379 (657)
|.+.-.--.++-..+.+..... .+ ..+..++.+. .+....+++|++|++.- +-.++
T Consensus 187 G~~kr~~~~e~~~~~R~gkGv~---~i---~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 187 GRVKKISHEEIPKTNRGVKGTE---VS---GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp SCEEEEEGGGSCCCCTTCCCEE---CC---CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred CcEEEeEHHHcccCCCCCcceE---EE---cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 9888776555433322211100 00 1223344432 35567899999999988 64433
No 43
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=71.26 E-value=80 Score=30.87 Aligned_cols=161 Identities=8% Similarity=-0.047 Sum_probs=74.5
Q ss_pred CeEEEEec--CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeC--CceEEEEEcC-----C
Q 006205 77 DVQNIACG--GRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACG--EYHTCAVTLS-----G 147 (657)
Q Consensus 77 ~I~~Ia~G--~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G--~~hs~aLt~d-----G 147 (657)
.|..++.. ..+.+....||.|+.|-......+ ..+. ....|..++.. ....++...+ |
T Consensus 76 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----------~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g 142 (369)
T 3zwl_B 76 TIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCV-----------ATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPG 142 (369)
T ss_dssp CEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE-----------EEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCC
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE-----------EEee--cCCCeEEEEEccCCCEEEEecCCccCCCC
Confidence 46666654 455666678999999975432111 1111 12345555443 3344444555 8
Q ss_pred cEEEEcCCCCCCCccCCCCCcceeeeeeecCCCCCceEEEEee--CCceEEEEecCCcEEEEecCCCCccCCCCCccccc
Q 006205 148 DLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISC--GPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSI 225 (657)
Q Consensus 148 ~Vy~wG~n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~--G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~ 225 (657)
.|+.|-.... .....-..........+........+..++. .....++.+.+|.|+.|-....++ .
T Consensus 143 ~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~ 210 (369)
T 3zwl_B 143 SINIYEIERD--SATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYE----------Y 210 (369)
T ss_dssp EEEEEEEEEC--TTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTE----------E
T ss_pred EEEEEEecCC--ccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcE----------e
Confidence 8888864421 1100000000000011111111113444443 334556667788899885332111 0
Q ss_pred ceeeeccCCCeEEEEEeCCCeeEEEEEeeecCCCccccCCCcEEEEcC
Q 006205 226 PREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGD 273 (657)
Q Consensus 226 P~~v~~l~~~~I~~Ia~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~ 273 (657)
...+. .....|..++.......+++- ..+|.|+.|-.
T Consensus 211 ~~~~~-~~~~~v~~~~~~~~~~~l~~~----------~~d~~i~v~d~ 247 (369)
T 3zwl_B 211 VDSID-LHEKSISDMQFSPDLTYFITS----------SRDTNSFLVDV 247 (369)
T ss_dssp EEEEE-CCSSCEEEEEECTTSSEEEEE----------ETTSEEEEEET
T ss_pred EEEEe-cCCCceeEEEECCCCCEEEEe----------cCCceEEEEEC
Confidence 11111 122356666665444433331 15888999954
No 44
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=71.10 E-value=72 Score=31.46 Aligned_cols=16 Identities=6% Similarity=0.135 Sum_probs=11.7
Q ss_pred ceEEEEecCCcEEEEec
Q 006205 193 WHTAVVTSAGQLFTFGD 209 (657)
Q Consensus 193 ~hs~~Lt~~G~vy~wG~ 209 (657)
.|++++. +++||.+|-
T Consensus 91 ~~~~~~~-~~~lyv~GG 106 (315)
T 4asc_A 91 LFGLGEA-LNSIYVVGG 106 (315)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred ceeEEEE-CCEEEEEeC
Confidence 4565555 789999984
No 45
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=70.58 E-value=44 Score=33.65 Aligned_cols=18 Identities=28% Similarity=0.283 Sum_probs=13.4
Q ss_pred CceEEEEEcCCcEEEEcCC
Q 006205 137 EYHTCAVTLSGDLYTWGDG 155 (657)
Q Consensus 137 ~~hs~aLt~dG~Vy~wG~n 155 (657)
..|++++ .+|+||.+|-.
T Consensus 110 ~~~~~~~-~~~~iyv~GG~ 127 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTGGV 127 (357)
T ss_dssp SSEEEEE-ETTEEEEEECC
T ss_pred ccceEEE-ECCEEEEEeCc
Confidence 3566666 78999999853
No 46
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=69.40 E-value=88 Score=30.57 Aligned_cols=194 Identities=9% Similarity=-0.014 Sum_probs=97.3
Q ss_pred CCcEEEEEeCCc-----eEEEEEcCCcEEEEcCCCCCCCccCCCCCcceeeeeeecCCCCCceEEEEeeC--CceEEEEe
Q 006205 127 NMNIELVACGEY-----HTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCG--PWHTAVVT 199 (657)
Q Consensus 127 ~~~I~~Va~G~~-----hs~aLt~dG~Vy~wG~n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~G--~~hs~~Lt 199 (657)
...|..|+.... ..+.-..||.|+.|-... .+ ......+.. ....|..++.. ....+...
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~--~~---------~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~ 105 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQD--SG---------QTIPKAQQM--HTGPVLDVCWSDDGSKVFTAS 105 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECT--TS---------CEEEEEEEE--CSSCEEEEEECTTSSEEEEEE
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCC--CC---------ceeEEEecc--ccCCEEEEEECcCCCEEEEEc
Confidence 457888887654 444556789999996541 11 111122222 12346666553 34556667
Q ss_pred cCCcEEEEecCCCCccCCCCCcccccceeeeccCCCeEEEEEe--CCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCC
Q 006205 200 SAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAAC--GVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKG 277 (657)
Q Consensus 200 ~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Ia~--G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~g 277 (657)
.+|.|..|-.... + ...+.. ....|..++. ......+++- ..+|.|+.|-.....
T Consensus 106 ~dg~v~iwd~~~~-~-----------~~~~~~-~~~~v~~~~~~~~~~~~~l~~~----------~~dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 106 CDKTAKMWDLSSN-Q-----------AIQIAQ-HDAPVKTIHWIKAPNYSCVMTG----------SWDKTLKFWDTRSSN 162 (368)
T ss_dssp TTSEEEEEETTTT-E-----------EEEEEE-CSSCEEEEEEEECSSCEEEEEE----------ETTSEEEEECSSCSS
T ss_pred CCCcEEEEEcCCC-C-----------ceeecc-ccCceEEEEEEeCCCCCEEEEc----------cCCCcEEEEECCCCc
Confidence 7899999954321 0 111111 1235666664 3333323321 158999999643211
Q ss_pred CCCCCCCCceeecEEEeecCCCCeEEEEccCcEEEEEecCCcEEEEeCCCCCCCCCCCCCCCcceeeccc-cCCCCEEEE
Q 006205 278 RLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGK-LSKSFVEEI 356 (657)
Q Consensus 278 qLG~g~~~~~~~P~~v~~l~~~~i~~I~~G~~~t~aLt~~G~Vy~wG~n~~GqLG~~~~~~~~p~~v~~~-l~~~~V~~I 356 (657)
.+ ..+.. ...+..+..-....++.+.++.++.|-...... ....+... .....+..+
T Consensus 163 ~~-----------~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 220 (368)
T 3mmy_A 163 PM-----------MVLQL--PERCYCADVIYPMAVVATAERGLIVYQLENQPS---------EFRRIESPLKHQHRCVAI 220 (368)
T ss_dssp CS-----------EEEEC--SSCEEEEEEETTEEEEEEGGGCEEEEECSSSCE---------EEEECCCSCSSCEEEEEE
T ss_pred EE-----------EEEec--CCCceEEEecCCeeEEEeCCCcEEEEEeccccc---------hhhhccccccCCCceEEE
Confidence 10 11111 124555555556777888889999987533211 00111100 011123333
Q ss_pred EEcccc----ccccccCCeEEEEecC
Q 006205 357 ACGSYH----VAVLTSKTEVYTWGKG 378 (657)
Q Consensus 357 a~G~~h----t~aLt~~G~vy~WG~n 378 (657)
...... .++-..+|.|..|=..
T Consensus 221 ~~~~~~~~~~~~~~~~dg~i~i~~~~ 246 (368)
T 3mmy_A 221 FKDKQNKPTGFALGSIEGRVAIHYIN 246 (368)
T ss_dssp EECTTSCEEEEEEEETTSEEEEEESS
T ss_pred cccCCCCCCeEEEecCCCcEEEEecC
Confidence 333332 5556688999999654
No 47
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=67.87 E-value=1.1e+02 Score=31.07 Aligned_cols=228 Identities=10% Similarity=0.063 Sum_probs=118.2
Q ss_pred eEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeC--CceEEEEEcCCcEEEEcCC
Q 006205 78 VQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACG--EYHTCAVTLSGDLYTWGDG 155 (657)
Q Consensus 78 I~~Ia~G~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G--~~hs~aLt~dG~Vy~wG~n 155 (657)
+..++-...+.++...+|.|+.|-....-. ...+.......|..|+.. ..+.++-..+|.|+.|-..
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~-----------~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGSV-----------SALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCCE-----------EEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCcE-----------eEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 444666667888899999999997644211 112222123457666653 3455566679999999544
Q ss_pred CCCCCccCCCCCcceeeeeeecCCCCCceEEEEeeCCceEEEEecCCcEEEEecCCCCccCCCCCcccccceeeeccCCC
Q 006205 156 TYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGL 235 (657)
Q Consensus 156 ~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~ 235 (657)
. +. ....+. .....|..++......+.-..+|.|+.|-....+. ....+.. ...
T Consensus 165 ~---~~----------~~~~~~--~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~-~~~ 218 (401)
T 4aez_A 165 S---QT----------KLRTMA--GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANH----------QIGTLQG-HSS 218 (401)
T ss_dssp T---CC----------EEEEEC--CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC----------EEEEEEC-CSS
T ss_pred C---Ce----------EEEEec--CCCCceEEEEECCCEEEEEcCCCCEEEEecccCcc----------eeeEEcC-CCC
Confidence 1 10 111222 12346777777777777778899999996432111 0111111 123
Q ss_pred eEEEEEeCCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeecCCCCeEEEEcc--CcEEEE
Q 006205 236 RTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACG--HSLTVA 313 (657)
Q Consensus 236 ~I~~Ia~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~~~~i~~I~~G--~~~t~a 313 (657)
.|..++.......+++- ..+|.|+.|-..... +..........|..++.. ....++
T Consensus 219 ~v~~~~~~~~~~~l~s~----------~~d~~v~iwd~~~~~------------~~~~~~~~~~~v~~~~~~p~~~~ll~ 276 (401)
T 4aez_A 219 EVCGLAWRSDGLQLASG----------GNDNVVQIWDARSSI------------PKFTKTNHNAAVKAVAWCPWQSNLLA 276 (401)
T ss_dssp CEEEEEECTTSSEEEEE----------ETTSCEEEEETTCSS------------EEEEECCCSSCCCEEEECTTSTTEEE
T ss_pred CeeEEEEcCCCCEEEEE----------eCCCeEEEccCCCCC------------ccEEecCCcceEEEEEECCCCCCEEE
Confidence 46666654433333321 158899999653310 111111112344444432 223333
Q ss_pred Ee---cCCcEEEEeCCCCCCCCCCCCCCCcceeeccccCCCCEEEEEEccccccccc----cCCeEEEEec
Q 006205 314 LT---TSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSYHVAVLT----SKTEVYTWGK 377 (657)
Q Consensus 314 Lt---~~G~Vy~wG~n~~GqLG~~~~~~~~p~~v~~~l~~~~V~~Ia~G~~ht~aLt----~~G~vy~WG~ 377 (657)
.. .+|.|+.|-.... .....+. ....|..++.......+++ .+|.|+.|-.
T Consensus 277 ~~~gs~d~~i~i~d~~~~----------~~~~~~~---~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~ 334 (401)
T 4aez_A 277 TGGGTMDKQIHFWNAATG----------ARVNTVD---AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSY 334 (401)
T ss_dssp EECCTTTCEEEEEETTTC----------CEEEEEE---CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEE
T ss_pred EecCCCCCEEEEEECCCC----------CEEEEEe---CCCcEEEEEECCCCCeEEEEeecCCCcEEEEec
Confidence 32 5888998864321 1111111 2344667766544433332 5888888854
No 48
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=66.86 E-value=1e+02 Score=30.40 Aligned_cols=215 Identities=14% Similarity=0.056 Sum_probs=112.2
Q ss_pred CeEEEEec--CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeC---CceEEEEEcCCcEEE
Q 006205 77 DVQNIACG--GRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACG---EYHTCAVTLSGDLYT 151 (657)
Q Consensus 77 ~I~~Ia~G--~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G---~~hs~aLt~dG~Vy~ 151 (657)
.+..+... ..+.+++|++|++|.---...-. +.+.. + .-++.+|..+.+- +...+++|++|.+.-
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~-~~~~~--------l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr 94 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQ-GSKVS--------L-KSREEKIVGAFIREKFGNRLLLATKKGYVKK 94 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHHHHT-SEECC--------C-SSTTCCEEEEEEGGGSCSEEEEEETTSEEEE
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCcc-Ccccc--------c-CCCCCEEEEEECCcCCCCEEEEEeCCCEEEE
Confidence 34444443 34578999999999864321100 00000 2 2246788888662 357889999998887
Q ss_pred EcCCCCCCCccCCCCCcceeeeeeecCCCCCceEEEEe--eCCceEEEEecCCcEEEEecCCCCccCCCCCcccccceee
Q 006205 152 WGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSIS--CGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREV 229 (657)
Q Consensus 152 wG~n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia--~G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v 229 (657)
.-...+. +-. . ........++..++.+. .+..+.+++|++|++|.+-....-.+|.+..-.. .+
T Consensus 95 ~~l~~~~--~~~----~----G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~----~i 160 (276)
T 3no0_A 95 IPLAEFE--YKA----Q----GMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ----GI 160 (276)
T ss_dssp EEGGGTT--TCS----T----TEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE----CC
T ss_pred EEHHHhh--hhc----C----CeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE----EE
Confidence 7544321 100 0 01111112344455443 3556799999999999997554444433221111 12
Q ss_pred eccCCCeEEEEEeCC--CeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeecCCCCeEEE--E
Q 006205 230 ESLKGLRTVRAACGV--WHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRV--A 305 (657)
Q Consensus 230 ~~l~~~~I~~Ia~G~--~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~~~~i~~I--~ 305 (657)
..-.+.+|+.+.... .+-++++ .+|...-.-..++-..+.+....... ..+..++.+ .
T Consensus 161 ~L~~~d~vv~~~~~~~~~~ll~~T------------~~G~~kr~~~~e~~~~~R~gkGv~~i------~~~~~lv~~~~~ 222 (276)
T 3no0_A 161 KLEKNDETSGLRIWNGEPYLLVIT------------AKGRVKKISHEEIPKTNRGVKGTEVS------GTKDTLVDLIPI 222 (276)
T ss_dssp CCCTTCCEEEEEEESSCSEEEEEE------------TTSCEEEEEGGGSCCCCTTCCCEECC------CSSSCEEEEEEE
T ss_pred ccCCCCEEEEEEEeCCCCEEEEEe------------CCCcEEEeEHHHcccCCCCCcceEEE------cCCCcEEEEEEe
Confidence 222344566554332 2344444 57776666544443333222111111 122344433 2
Q ss_pred ccCcEEEEEecCCcEEE--EeCCCCCCCCC
Q 006205 306 CGHSLTVALTTSGHVYT--MGSPVYGQLGN 333 (657)
Q Consensus 306 ~G~~~t~aLt~~G~Vy~--wG~n~~GqLG~ 333 (657)
.+....+++|++|.+.. +-.++.-.+|.
T Consensus 223 ~~~~~i~~~t~~G~~ir~~~~~~~i~~~~R 252 (276)
T 3no0_A 223 KEEVELLITTKNGKAFYDKINQKDIPLSTK 252 (276)
T ss_dssp SSEEEEEEEETTSCEEEEEEEGGGSCBCCT
T ss_pred CCCCEEEEEcCCCeEEEeeeCHHHCCCcCC
Confidence 35567889999999988 76555544443
No 49
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=66.48 E-value=2.4 Score=47.44 Aligned_cols=39 Identities=15% Similarity=0.370 Sum_probs=32.2
Q ss_pred cccCcccCCCCCCCC-CcccccccccccccceeeccCCCcc
Q 006205 425 SGVDQSMCSGCRLPF-NNFKRKRHNCYNCGLVFCHSCSSKK 464 (657)
Q Consensus 425 ~~~d~~~C~~C~~~F-~~f~rkrh~C~~cG~~~C~~Cs~~~ 464 (657)
.......|..|+..| + +.++.++|+.||..+|..|...-
T Consensus 525 ~~~~~t~C~~C~~~l~g-l~~qg~~C~~C~~~vHk~C~~~v 564 (587)
T 3ky9_A 525 SFEETTSCKACQMLLRG-TFYQGYRCHRCRASAHKECLGRV 564 (587)
T ss_dssp CCSSCCBCTTTCSBCCS-SSCCEEEETTTCCEECSGGGGGS
T ss_pred eCCCCcccccccccccc-cccCCcCCCCCCCccchhhhhcC
Confidence 446678999999987 5 55666999999999999998763
No 50
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=65.28 E-value=94 Score=30.30 Aligned_cols=17 Identities=18% Similarity=0.421 Sum_probs=12.3
Q ss_pred ceEEEEEcCCcEEEEcCC
Q 006205 138 YHTCAVTLSGDLYTWGDG 155 (657)
Q Consensus 138 ~hs~aLt~dG~Vy~wG~n 155 (657)
.|++++ -++.||.+|-.
T Consensus 48 ~~~~~~-~~~~lyv~GG~ 64 (306)
T 3ii7_A 48 DAACVF-WDNVVYILGGS 64 (306)
T ss_dssp SCEEEE-ETTEEEEECCB
T ss_pred eeEEEE-ECCEEEEEeCC
Confidence 456555 48899999865
No 51
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=63.03 E-value=1.2e+02 Score=29.65 Aligned_cols=108 Identities=10% Similarity=0.069 Sum_probs=60.6
Q ss_pred CCCeEEEEecCC-----eEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeC--CceEEEEEcCC
Q 006205 75 VLDVQNIACGGR-----HAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACG--EYHTCAVTLSG 147 (657)
Q Consensus 75 ~~~I~~Ia~G~~-----h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G--~~hs~aLt~dG 147 (657)
...|..|+.... ..+.-..||.|..|-....++. ....+.. ....|..++.. ....+....||
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~---------~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg 108 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT---------IPKAQQM-HTGPVLDVCWSDDGSKVFTASCDK 108 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE---------EEEEEEE-CSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce---------eEEEecc-ccCCEEEEEECcCCCEEEEEcCCC
Confidence 346888887754 4455577899999975542211 1111211 23357777654 33556667799
Q ss_pred cEEEEcCCCCCCCccCCCCCcceeeeeeecCCCCCceEEEEee--CC--ceEEEEecCCcEEEEe
Q 006205 148 DLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISC--GP--WHTAVVTSAGQLFTFG 208 (657)
Q Consensus 148 ~Vy~wG~n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~--G~--~hs~~Lt~~G~vy~wG 208 (657)
.|..|-... ++ ...+.. ....|..++. .. .+.+.-..+|.|+.|-
T Consensus 109 ~v~iwd~~~---~~-----------~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd 157 (368)
T 3mmy_A 109 TAKMWDLSS---NQ-----------AIQIAQ--HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD 157 (368)
T ss_dssp EEEEEETTT---TE-----------EEEEEE--CSSCEEEEEEEECSSCEEEEEEETTSEEEEEC
T ss_pred cEEEEEcCC---CC-----------ceeecc--ccCceEEEEEEeCCCCCEEEEccCCCcEEEEE
Confidence 999995441 11 111111 1235666664 32 3345556789999995
No 52
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=61.73 E-value=5.3 Score=30.55 Aligned_cols=30 Identities=30% Similarity=0.629 Sum_probs=22.9
Q ss_pred cCcccCCCCCCCCCcccccccccccccceeeccC
Q 006205 427 VDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSC 460 (657)
Q Consensus 427 ~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~C 460 (657)
.....|..|+...++. ...|+ ||..||...
T Consensus 13 ~~~~rC~~C~kkvgl~---~f~Cr-Cg~~FC~~H 42 (64)
T 1wfh_A 13 QRPNRCTVCRKRVGLT---GFMCR-CGTTFCGSH 42 (64)
T ss_dssp SSCCCCTTTCCCCCTT---CEECS-SSCEECTTT
T ss_pred CcCCcChhhCCccCcc---CEEee-cCCEecccc
Confidence 3457899999998843 25696 999999753
No 53
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=61.45 E-value=1.3e+02 Score=29.57 Aligned_cols=17 Identities=41% Similarity=0.667 Sum_probs=12.1
Q ss_pred CeEEEEEcCCcEEEEeC
Q 006205 86 RHAALVNKQGEVFSWGE 102 (657)
Q Consensus 86 ~h~~~lt~~G~Vy~wG~ 102 (657)
.+..++.-+++||.+|-
T Consensus 37 ~~~~~~~~~~~iyv~GG 53 (315)
T 4asc_A 37 NHVSLVTKENQVFVAGG 53 (315)
T ss_dssp SEEEEECTTCCEEEEEE
T ss_pred cceEEEEECCEEEEEcC
Confidence 34445557899999995
No 54
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=60.66 E-value=6.1 Score=29.51 Aligned_cols=54 Identities=33% Similarity=0.672 Sum_probs=39.6
Q ss_pred ccCcccCCCCCCC-CCcccccccccccccceeeccCCCccccccccCCCCCCCeeeCcchHHh
Q 006205 426 GVDQSMCSGCRLP-FNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNK 487 (657)
Q Consensus 426 ~~d~~~C~~C~~~-F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~ 487 (657)
.+|...|..|... |. -.-+ |.|..|-..||..|.-+-.+. .++-.-||.-|..+
T Consensus 6 ~~d~~~C~iC~KTKFA-DG~G-h~C~yCk~r~CaRCGg~v~lr------~~k~~WvC~lC~k~ 60 (62)
T 2a20_A 6 KGDAPTCGICHKTKFA-DGCG-HNCSYCQTKFCARCGGRVSLR------SNKVMWVCNLCRKQ 60 (62)
T ss_dssp SSCCCCCSSSSCSCCC-SSCC-EEBTTTCCEECTTSEEEEESS------TTCEEEEEHHHHHH
T ss_pred cCCcchhhhhccceec-cCCC-ccccccCCeeecccCCEeeec------CCeEEEEehhhhhc
Confidence 3577889999876 65 3334 889999999999997665332 25777889888653
No 55
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=60.14 E-value=1.3e+02 Score=29.21 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=12.0
Q ss_pred CeEEEEEcCCcEEEEeCC
Q 006205 86 RHAALVNKQGEVFSWGEE 103 (657)
Q Consensus 86 ~h~~~lt~~G~Vy~wG~n 103 (657)
.|++++. +++||.+|-.
T Consensus 54 ~~~~~~~-~~~lyv~GG~ 70 (302)
T 2xn4_A 54 RAGMVYM-AGLVFAVGGF 70 (302)
T ss_dssp SCEEEEE-TTEEEEESCB
T ss_pred cceEEEE-CCEEEEEeCc
Confidence 4565544 8899999953
No 56
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=58.59 E-value=1.4e+02 Score=29.16 Aligned_cols=17 Identities=12% Similarity=0.040 Sum_probs=10.6
Q ss_pred CccccCCCCcEEEEcCC
Q 006205 25 GHDDGDALGDVFIWGEG 41 (657)
Q Consensus 25 ~~~~l~~~G~Vy~WG~n 41 (657)
.+.+...++.||++|-.
T Consensus 17 ~~~~~~~~~~i~v~GG~ 33 (308)
T 1zgk_A 17 GSHAPKVGRLIYTAGGY 33 (308)
T ss_dssp ----CCCCCCEEEECCB
T ss_pred CccccCCCCEEEEEeCc
Confidence 34566778899999964
No 57
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=58.42 E-value=16 Score=29.62 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=23.0
Q ss_pred cCcccCCCCCCCCCcccccccccccccceeecc
Q 006205 427 VDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHS 459 (657)
Q Consensus 427 ~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~ 459 (657)
.....|..|+...++. . ...|+ ||..||..
T Consensus 23 ~~~~rC~~C~kkvgl~-~-~f~Cr-Cg~~FC~~ 52 (85)
T 1wff_A 23 KIMKHCFLCGKKTGLA-T-SFECR-CGNNFCAS 52 (85)
T ss_dssp CCCCBCSSSCCBCSSS-S-CEECT-TCCEECTT
T ss_pred ccCccchhhCCeeccc-C-CeEcC-CCCEeccc
Confidence 4567899999988832 2 26797 99999975
No 58
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=57.82 E-value=1.4e+02 Score=28.88 Aligned_cols=18 Identities=11% Similarity=0.065 Sum_probs=12.4
Q ss_pred CceEEEEEcCCcEEEEcCC
Q 006205 137 EYHTCAVTLSGDLYTWGDG 155 (657)
Q Consensus 137 ~~hs~aLt~dG~Vy~wG~n 155 (657)
..|++++. +++||.+|-.
T Consensus 104 ~~~~~~~~-~~~lyv~GG~ 121 (301)
T 2vpj_A 104 GLAGATTL-GDMIYVSGGF 121 (301)
T ss_dssp BSCEEEEE-TTEEEEECCB
T ss_pred cceeEEEE-CCEEEEEccc
Confidence 34555544 7899999854
No 59
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=57.47 E-value=7.4 Score=25.36 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=17.8
Q ss_pred chhhhhhhhHHHHHHHHHHHhh
Q 006205 632 VDDAKRTNDSLSQEVIKLRAQV 653 (657)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~ 653 (657)
+++|-..|..|.+||.+|++=+
T Consensus 9 VEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 9 VEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHHHHHHHHHHHHHh
Confidence 5778888888999999998743
No 60
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=57.07 E-value=1.4e+02 Score=28.65 Aligned_cols=225 Identities=8% Similarity=-0.049 Sum_probs=109.1
Q ss_pred CeEEEEec--CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeC--CceEEEEEcCCcEEEE
Q 006205 77 DVQNIACG--GRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACG--EYHTCAVTLSGDLYTW 152 (657)
Q Consensus 77 ~I~~Ia~G--~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G--~~hs~aLt~dG~Vy~w 152 (657)
.|..++.. ....+....+|.|+.|-...... .....+. .....|..++.. ..+.+....+|.|+.|
T Consensus 99 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---------~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~ 168 (337)
T 1gxr_A 99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP---------RIKAELT-SSAPACYALAISPDSKVCFSCCSDGNIAVW 168 (337)
T ss_dssp BEEEEEECTTSSEEEEEESSSEEEEEECCCC-----------EEEEEEE-CSSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc---------ceeeecc-cCCCceEEEEECCCCCEEEEEeCCCcEEEE
Confidence 46666654 34455567789999996543110 0001111 122356666553 3455666778999999
Q ss_pred cCCCCCCCccCCCCCcceeeeeeecCCCCCceEEEEeeC--CceEEEEecCCcEEEEecCCCCccCCCCCcccccceeee
Q 006205 153 GDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCG--PWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVE 230 (657)
Q Consensus 153 G~n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~G--~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~ 230 (657)
-... + .....+.. ....|..++.. ....+..+.+|.|+.|-...... ...+.
T Consensus 169 d~~~---~----------~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-----------~~~~~ 222 (337)
T 1gxr_A 169 DLHN---Q----------TLVRQFQG--HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ-----------LQQHD 222 (337)
T ss_dssp ETTT---T----------EEEEEECC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-----------EEEEE
T ss_pred eCCC---C----------ceeeeeec--ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCce-----------Eeeec
Confidence 5441 1 01112221 22346666553 34555667889999995332100 01111
Q ss_pred ccCCCeEEEEEeCCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeecCCCCeEEEEcc--C
Q 006205 231 SLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACG--H 308 (657)
Q Consensus 231 ~l~~~~I~~Ia~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~~~~i~~I~~G--~ 308 (657)
....+..++.......+++- ..++.++.|-..... ...+. .....|..++.. .
T Consensus 223 --~~~~v~~~~~s~~~~~l~~~----------~~~~~i~~~~~~~~~------------~~~~~-~~~~~v~~~~~~~~~ 277 (337)
T 1gxr_A 223 --FTSQIFSLGYCPTGEWLAVG----------MESSNVEVLHVNKPD------------KYQLH-LHESCVLSLKFAYCG 277 (337)
T ss_dssp --CSSCEEEEEECTTSSEEEEE----------ETTSCEEEEETTSSC------------EEEEC-CCSSCEEEEEECTTS
T ss_pred --CCCceEEEEECCCCCEEEEE----------cCCCcEEEEECCCCC------------eEEEc-CCccceeEEEECCCC
Confidence 12245555543332222221 157888888653311 01111 112345555443 3
Q ss_pred cEEEEEecCCcEEEEeCCCCCCCCCCCCCCCcceeeccccCCCCEEEEEEccc--cccccccCCeEEEE
Q 006205 309 SLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSY--HVAVLTSKTEVYTW 375 (657)
Q Consensus 309 ~~t~aLt~~G~Vy~wG~n~~GqLG~~~~~~~~p~~v~~~l~~~~V~~Ia~G~~--ht~aLt~~G~vy~W 375 (657)
.+.+....+|.|+.|-......+ ... .....|..++.... ..++-..+|.|+.|
T Consensus 278 ~~l~~~~~dg~i~~~~~~~~~~~----------~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 333 (337)
T 1gxr_A 278 KWFVSTGKDNLLNAWRTPYGASI----------FQS---KESSSVLSCDISVDDKYIVTGSGDKKATVY 333 (337)
T ss_dssp SEEEEEETTSEEEEEETTTCCEE----------EEE---ECSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred CEEEEecCCCcEEEEECCCCeEE----------EEe---cCCCcEEEEEECCCCCEEEEecCCCeEEEE
Confidence 44555667888999874321110 111 12244666655433 33344567777777
No 61
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.73 E-value=5.9 Score=31.41 Aligned_cols=51 Identities=20% Similarity=0.597 Sum_probs=39.7
Q ss_pred cCcccCCCCCCCCCcccccccccccccceeeccCCCccccccccCCCCCCCeeeCcchHHh
Q 006205 427 VDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNK 487 (657)
Q Consensus 427 ~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~ 487 (657)
+....|..|..+|+.+..+---|..|-.-+|..|--... .+.=.|..|+..
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~~----------~~~W~C~VC~k~ 73 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQES----------NGTWRCKVCSGP 73 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEECS----------TTCEEEHHHHSS
T ss_pred CCccchhhhCccccccccCCCcCcccChhhcccccccCC----------CCCEEEeeCchh
Confidence 456789999999997776768899999999999964431 146788888764
No 62
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=56.51 E-value=2.5e+02 Score=31.34 Aligned_cols=230 Identities=11% Similarity=0.014 Sum_probs=110.9
Q ss_pred CeEEEEec--CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEe--CCceEEEEEcCCcEEEE
Q 006205 77 DVQNIACG--GRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVAC--GEYHTCAVTLSGDLYTW 152 (657)
Q Consensus 77 ~I~~Ia~G--~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~--G~~hs~aLt~dG~Vy~w 152 (657)
.|..|+.. +...++-..+|.|..|-...... ...+.. ....|..++. .....++...+|.|+.|
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~-----------~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE-----------VRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-----------EEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCCce-----------EEEEec-CCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 46666654 34455556789999996433111 111111 1234555543 33455666778999999
Q ss_pred cCCCCCCCccCCCCCcceeeeeeecCCCCCceEEEEeeCC--ceEEEEecCCcEEEEecCCCCccCCCCCcccccceeee
Q 006205 153 GDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGP--WHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVE 230 (657)
Q Consensus 153 G~n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~G~--~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~ 230 (657)
-... +. ....+.. ....|..++... .+.+.-..+|.|..|-..... .....+.
T Consensus 83 ~~~~---~~----------~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~----------~~~~~~~ 137 (814)
T 3mkq_A 83 NYNT---GE----------KVVDFEA--HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW----------ALEQTFE 137 (814)
T ss_dssp ETTT---CC----------EEEEEEC--CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS----------EEEEEEE
T ss_pred ECCC---Cc----------EEEEEec--CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc----------eEEEEEc
Confidence 6441 11 1111221 122455555443 345555678888888532110 0011111
Q ss_pred ccCCCeEEEEEeCC-C-eeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeecCCCCeEEEEc--
Q 006205 231 SLKGLRTVRAACGV-W-HTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVAC-- 306 (657)
Q Consensus 231 ~l~~~~I~~Ia~G~-~-hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~~~~i~~I~~-- 306 (657)
.....|..++... . ..++.. ..+|.|+.|-...... ...+.......+..+..
T Consensus 138 -~~~~~v~~~~~~p~~~~~l~~~-----------~~dg~v~vwd~~~~~~-----------~~~~~~~~~~~v~~~~~~~ 194 (814)
T 3mkq_A 138 -GHEHFVMCVAFNPKDPSTFASG-----------CLDRTVKVWSLGQSTP-----------NFTLTTGQERGVNYVDYYP 194 (814)
T ss_dssp -CCSSCEEEEEEETTEEEEEEEE-----------ETTSEEEEEETTCSSC-----------SEEEECCCTTCCCEEEECC
T ss_pred -CCCCcEEEEEEEcCCCCEEEEE-----------eCCCeEEEEECCCCcc-----------eeEEecCCCCCEEEEEEEE
Confidence 1123466666544 2 233332 1689999996432110 11111111123333332
Q ss_pred --cCcEEEEEecCCcEEEEeCCCCCCCCCCCCCCCcceeeccccCCCCEEEEEEcccc--ccccccCCeEEEEecC
Q 006205 307 --GHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSYH--VAVLTSKTEVYTWGKG 378 (657)
Q Consensus 307 --G~~~t~aLt~~G~Vy~wG~n~~GqLG~~~~~~~~p~~v~~~l~~~~V~~Ia~G~~h--t~aLt~~G~vy~WG~n 378 (657)
.....++-..+|.|+.|-.... .....+.. ....|..++..... .+.-..+|.|+.|-..
T Consensus 195 ~~~~~~l~~~~~dg~i~~~d~~~~----------~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~ 258 (814)
T 3mkq_A 195 LPDKPYMITASDDLTIKIWDYQTK----------SCVATLEG--HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258 (814)
T ss_dssp STTCCEEEEECTTSEEEEEETTTT----------EEEEEEEC--CSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred CCCCCEEEEEeCCCEEEEEECCCC----------cEEEEEcC--CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 3345555667889999964221 11111111 22346666655443 3344568999999544
No 63
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=56.17 E-value=5.6 Score=31.30 Aligned_cols=28 Identities=29% Similarity=0.667 Sum_probs=22.0
Q ss_pred cccCCCCCCCCCcccccccccccccceeeccC
Q 006205 429 QSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSC 460 (657)
Q Consensus 429 ~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~C 460 (657)
...|..|+...+++. ..|+ ||..||...
T Consensus 25 ~nRC~~CrKkvgL~g---f~Cr-Cg~~FCs~H 52 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTG---FDCR-CGNLFCGLH 52 (74)
T ss_dssp TTBCSSSCCBCGGGC---EECT-TSCEECSSS
T ss_pred CCcChhhCCcccccC---eecC-CCCEechhc
Confidence 467999999988432 5699 999999753
No 64
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=55.96 E-value=6.6 Score=29.66 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=21.3
Q ss_pred chhhhhhhhHHHHHHHHHHHhhhhc
Q 006205 632 VDDAKRTNDSLSQEVIKLRAQVFAF 656 (657)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (657)
++.|...|..|..||..|+.++..|
T Consensus 31 ~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 31 AEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788889999999999999988765
No 65
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=55.93 E-value=1.7e+02 Score=29.41 Aligned_cols=115 Identities=14% Similarity=0.121 Sum_probs=61.5
Q ss_pred CeEEEEe---cCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeCC---ceEEEEEcCCcEE
Q 006205 77 DVQNIAC---GGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGE---YHTCAVTLSGDLY 150 (657)
Q Consensus 77 ~I~~Ia~---G~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~---~hs~aLt~dG~Vy 150 (657)
.|..++. .....+.-..||.|..|-....+... ....+...-......|..|+... ...+.-..||.|+
T Consensus 83 ~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~ 157 (402)
T 2aq5_A 83 PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL-----PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVIL 157 (402)
T ss_dssp CEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS-----CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEE
T ss_pred CEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc-----ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEE
Confidence 5677776 34555666789999999865543211 01111111111234677776643 3455556799999
Q ss_pred EEcCCCCCCCccCCCCCcceeeeeeecCCCCCceEEEEeeC--CceEEEEecCCcEEEEec
Q 006205 151 TWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCG--PWHTAVVTSAGQLFTFGD 209 (657)
Q Consensus 151 ~wG~n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~G--~~hs~~Lt~~G~vy~wG~ 209 (657)
.|-... +. ....+........|..++.. ....+.-..+|.|+.|-.
T Consensus 158 iwd~~~---~~----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 205 (402)
T 2aq5_A 158 VWDVGT---GA----------AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEP 205 (402)
T ss_dssp EEETTT---TE----------EEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEET
T ss_pred EEECCC---CC----------ccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeC
Confidence 995441 11 11122101122356666553 344555567889999953
No 66
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=54.99 E-value=1.6e+02 Score=28.91 Aligned_cols=16 Identities=25% Similarity=0.534 Sum_probs=11.9
Q ss_pred cEEEEEecCCcEEEEeC
Q 006205 309 SLTVALTTSGHVYTMGS 325 (657)
Q Consensus 309 ~~t~aLt~~G~Vy~wG~ 325 (657)
.|+++. -+|+||++|-
T Consensus 151 ~~~~~~-~~~~iyv~GG 166 (318)
T 2woz_A 151 GHNVIS-HNGMIYCLGG 166 (318)
T ss_dssp SCEEEE-ETTEEEEECC
T ss_pred ccEEEE-ECCEEEEEcC
Confidence 456555 6789999994
No 67
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=54.66 E-value=1.6e+02 Score=28.61 Aligned_cols=111 Identities=12% Similarity=-0.038 Sum_probs=62.0
Q ss_pred CCeEEEEec------CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEecc-CCCCcEEEEEeCCc------eEEE
Q 006205 76 LDVQNIACG------GRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDA-LSNMNIELVACGEY------HTCA 142 (657)
Q Consensus 76 ~~I~~Ia~G------~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~-l~~~~I~~Va~G~~------hs~a 142 (657)
..|..|+.. ....++...+|.|..|-......+ ........ .....|..++.... ..+.
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI--------RLLQSYVDADADENFYTCAWTYDSNTSHPLLAV 90 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE--------EEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE--------EeeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence 467777765 556777778889999975432221 01111111 12235666654333 5556
Q ss_pred EEcCCcEEEEcCCCCCCCccCCCCCcceeeeeeecCCCCCceEEEEeeC---CceEEEEecCCcEEEEec
Q 006205 143 VTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCG---PWHTAVVTSAGQLFTFGD 209 (657)
Q Consensus 143 Lt~dG~Vy~wG~n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~G---~~hs~~Lt~~G~vy~wG~ 209 (657)
-..||.|+.|-... +. ....+.. ....|..++.. ....+.-..+|.|+.|-.
T Consensus 91 ~~~dg~i~v~d~~~---~~----------~~~~~~~--~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~ 145 (366)
T 3k26_A 91 AGSRGIIRIINPIT---MQ----------CIKHYVG--HGNAINELKFHPRDPNLLLSVSKDHALRLWNI 145 (366)
T ss_dssp EETTCEEEEECTTT---CC----------EEEEEES--CCSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred ecCCCEEEEEEchh---ce----------EeeeecC--CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEe
Confidence 67899999995441 11 0111221 13356666653 355666678999999964
No 68
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=54.12 E-value=1.6e+02 Score=28.52 Aligned_cols=18 Identities=17% Similarity=0.221 Sum_probs=12.5
Q ss_pred CeEEEEEcCCcEEEEeCCC
Q 006205 86 RHAALVNKQGEVFSWGEES 104 (657)
Q Consensus 86 ~h~~~lt~~G~Vy~wG~n~ 104 (657)
.|++++ -+++||.+|-..
T Consensus 48 ~~~~~~-~~~~lyv~GG~~ 65 (306)
T 3ii7_A 48 DAACVF-WDNVVYILGGSQ 65 (306)
T ss_dssp SCEEEE-ETTEEEEECCBS
T ss_pred eeEEEE-ECCEEEEEeCCC
Confidence 455555 478899999543
No 69
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=53.72 E-value=1.3e+02 Score=29.54 Aligned_cols=17 Identities=29% Similarity=0.632 Sum_probs=12.6
Q ss_pred CeEEEEEcCCcEEEEeC
Q 006205 86 RHAALVNKQGEVFSWGE 102 (657)
Q Consensus 86 ~h~~~lt~~G~Vy~wG~ 102 (657)
.+..++..+++||.+|-
T Consensus 48 ~~~~~~~~~~~lyv~GG 64 (318)
T 2woz_A 48 NHSSIVTQQNQVYVVGG 64 (318)
T ss_dssp SEEEEECSSSCEEEEES
T ss_pred cceEEEEECCEEEEECC
Confidence 44455667899999995
No 70
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=52.55 E-value=9.1 Score=29.01 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=22.1
Q ss_pred chhhhhhhhHHHHHHHHHHHhhhhc
Q 006205 632 VDDAKRTNDSLSQEVIKLRAQVFAF 656 (657)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (657)
++.|...|+.|..||..|+.++..|
T Consensus 31 v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 31 VKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999988776
No 71
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=51.86 E-value=2e+02 Score=29.02 Aligned_cols=216 Identities=10% Similarity=-0.044 Sum_probs=110.9
Q ss_pred EEEeCCceEEEEEcCCcEEEEcCCCCCCCccCCCCCcceeee--eeecCCCCCceEEEEeeCC-----ceEEEEecCCcE
Q 006205 132 LVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVP--KRVNGPLEGIHVSSISCGP-----WHTAVVTSAGQL 204 (657)
Q Consensus 132 ~Va~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~~~~~~~~~P--~~v~~~l~~~~I~~Ia~G~-----~hs~~Lt~~G~v 204 (657)
..+....+.+++|+.|++|..--. .+-.......-.| ..+. ..++++|+.+.... ...+++|++|.+
T Consensus 48 ~~~~t~d~ll~fT~~Gr~y~~~~~-----~lp~~~r~~~G~~i~~~l~-l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~i 121 (327)
T 3uc1_A 48 FVCSTHDLILFFTTQGRVYRAKAY-----DLPEASRTARGQHVANLLA-FQPEERIAQVIQIRGYTDAPYLVLATRNGLV 121 (327)
T ss_dssp EEEETTSEEEEEETTSEEEEEEGG-----GSCBCCSSSCCEEHHHHTT-CCTTCCEEEEEEESSTTSSSEEEEEETTSEE
T ss_pred EEeCCCCEEEEEeCCCeEEEEEHH-----HCcCCCccCCCEEHHHccC-CCCCCEEEEEEEeccCCCCCEEEEEcCCCEE
Confidence 345677778899999999987533 1211111111112 1222 23567888886653 468889999988
Q ss_pred EEEecCCCCccCCCCCcccccceeeeccCCCeEEE--EEeCCCeeEEEEEeeecCCCccccCCCcEEEEcCC--CCCCCC
Q 006205 205 FTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVR--AACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDG--DKGRLG 280 (657)
Q Consensus 205 y~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~--Ia~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n--~~gqLG 280 (657)
.-.-..+|-... ..-...+..-.+..++. +..+..+.++++ ++|++|.+-.. +--.+|
T Consensus 122 Kr~~l~~~~~~~------r~G~~~i~lke~D~lv~~~~~~~~d~ill~T------------~~G~~~rf~~~~~eip~~g 183 (327)
T 3uc1_A 122 KKSKLTDFDSNR------SGGIVAVNLRDNDELVGAVLCSAGDDLLLVS------------ANGQSIRFSATDEALRPMG 183 (327)
T ss_dssp EEEEGGGGCCCC------SSCEESCBCCTTCCEEEEEEECTTCEEEEEE------------TTSEEEEEECCTTTSCCCC
T ss_pred EEeEHHHhhccc------cCceEEEEECCCCEEEEEEEecCCCEEEEEE------------CCCeEEEEECcccccCcCC
Confidence 877644432110 00000111112223333 333555566666 79999998776 433333
Q ss_pred CCCCCceeecEEEeecCCCCeEEEEcc--CcEEEEEecCCcEEEEeCCCCCCCCCCCCCCCcceeeccccCCCCEEEEE-
Q 006205 281 HGDKEAKLVPTCVAALVEPNFCRVACG--HSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIA- 357 (657)
Q Consensus 281 ~g~~~~~~~P~~v~~l~~~~i~~I~~G--~~~t~aLt~~G~Vy~wG~n~~GqLG~~~~~~~~p~~v~~~l~~~~V~~Ia- 357 (657)
....... .+....+..|+.+..- ..+.+++|+.|.+.-.--.+|-..+.+..... .+...-.+..++.+.
T Consensus 184 r~a~Gv~----~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~---~~~l~~~~d~lv~~~~ 256 (327)
T 3uc1_A 184 RATSGVQ----GMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVL---TVMYDRRRGRLVGALI 256 (327)
T ss_dssp TTSBCEE----SSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEE---SSCCCTTTCSEEEEEE
T ss_pred cCCCCee----eecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEE---EEEecCCCCeEEEEEE
Confidence 3222111 1222345667766543 34677888898776654333322221111000 000000022344333
Q ss_pred -EccccccccccCCeEEEEecC
Q 006205 358 -CGSYHVAVLTSKTEVYTWGKG 378 (657)
Q Consensus 358 -~G~~ht~aLt~~G~vy~WG~n 378 (657)
.+..+.+++|++|++.-+-..
T Consensus 257 ~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 257 VDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp ECTTCEEEEEEGGGCEEEEEGG
T ss_pred eCCCccEEEEcCCCeEEEEehh
Confidence 356778999999998887433
No 72
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=51.74 E-value=2e+02 Score=28.91 Aligned_cols=115 Identities=14% Similarity=0.120 Sum_probs=60.3
Q ss_pred EEEEecCCeEEEE---EcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeC---CceEEEEEcCCcEEEE
Q 006205 79 QNIACGGRHAALV---NKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACG---EYHTCAVTLSGDLYTW 152 (657)
Q Consensus 79 ~~Ia~G~~h~~~l---t~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G---~~hs~aLt~dG~Vy~w 152 (657)
..+++.....+++ ..+|.|+.|-.+..+++... .+ .+.. ....|..++.. ....+.-..||.|..|
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~------~~-~~~~-h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw 109 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKN------VP-LVCG-HTAPVLDIAWCPHNDNVIASGSEDCTVMVW 109 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTT------CC-CBCC-CSSCEEEEEECTTCTTEEEEEETTSEEEEE
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCC------Cc-eEec-CCCCEEEEEeCCCCCCEEEEEeCCCeEEEE
Confidence 3466666666655 45799999987655443110 00 0111 12357777663 3455555679999999
Q ss_pred cCCCCCCCccCCCCCcceeeeeeecCCCCCceEEEEeeCCc---eEEEEecCCcEEEEec
Q 006205 153 GDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPW---HTAVVTSAGQLFTFGD 209 (657)
Q Consensus 153 G~n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~G~~---hs~~Lt~~G~vy~wG~ 209 (657)
-... .+....... ....+.. ....|..|+.... ..+.-..+|.|+.|-.
T Consensus 110 ~~~~--~~~~~~~~~----~~~~~~~--h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 161 (402)
T 2aq5_A 110 EIPD--GGLVLPLRE----PVITLEG--HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV 161 (402)
T ss_dssp ECCT--TCCSSCBCS----CSEEEEC--CSSCEEEEEECSSBTTEEEEEETTSCEEEEET
T ss_pred EccC--CCCccccCC----ceEEecC--CCCeEEEEEECcCCCCEEEEEcCCCEEEEEEC
Confidence 6552 111100000 0111111 1235666665433 4455567899999953
No 73
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=51.73 E-value=13 Score=22.45 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=19.8
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhhc
Q 006205 633 DDAKRTNDSLSQEVIKLRAQVFAF 656 (657)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~ 656 (657)
..||+.|.-|.||+.-|.-++..|
T Consensus 3 rrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHh
Confidence 468999999999999998776544
No 74
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=51.73 E-value=1.6e+02 Score=27.82 Aligned_cols=228 Identities=7% Similarity=-0.066 Sum_probs=116.6
Q ss_pred CeEEEEec--CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeCCceEEEEEcCCcEEEEcC
Q 006205 77 DVQNIACG--GRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGD 154 (657)
Q Consensus 77 ~I~~Ia~G--~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~ 154 (657)
.|..++.. ....+.-..+|.|..|-....... .....+. .....|..++......+....+|.|+.|-.
T Consensus 61 ~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~--------~~~~~~~-~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~ 131 (313)
T 3odt_A 61 FLNSVCYDSEKELLLFGGKDTMINGVPLFATSGE--------DPLYTLI-GHQGNVCSLSFQDGVVISGSWDKTAKVWKE 131 (313)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEETTCCTTS--------CC-CEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEET
T ss_pred cEEEEEECCCCCEEEEecCCCeEEEEEeeecCCC--------Ccccchh-hcccCEEEEEecCCEEEEEeCCCCEEEEcC
Confidence 35454433 455666677888888865431100 0011111 123467777777777788888999999941
Q ss_pred CCCCCCccCCCCCcceeeeeeecCCCCCceEEEEee---CCceEEEEecCCcEEEEecCCCCccCCCCCcccccceeeec
Q 006205 155 GTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISC---GPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVES 231 (657)
Q Consensus 155 n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~---G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~ 231 (657)
. . ....+.. ....|..++. .....+....+|.|+.|-.. .....+..
T Consensus 132 ~-----~----------~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~-------------~~~~~~~~ 181 (313)
T 3odt_A 132 G-----S----------LVYNLQA--HNASVWDAKVVSFSENKFLTASADKTIKLWQND-------------KVIKTFSG 181 (313)
T ss_dssp T-----E----------EEEEEEC--CSSCEEEEEEEETTTTEEEEEETTSCEEEEETT-------------EEEEEECS
T ss_pred C-----c----------EEEeccc--CCCceeEEEEccCCCCEEEEEECCCCEEEEecC-------------ceEEEEec
Confidence 1 0 0111111 1224544443 45667777889999999411 00111111
Q ss_pred cCCCeEEEEEeCCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeecCCCCeEEEEccCc-E
Q 006205 232 LKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHS-L 310 (657)
Q Consensus 232 l~~~~I~~Ia~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~~~~i~~I~~G~~-~ 310 (657)
.....|..++......++... .+|.|+.|-..... +..........|..++.... .
T Consensus 182 ~~~~~i~~~~~~~~~~~~~~~-----------~dg~i~i~d~~~~~------------~~~~~~~~~~~i~~~~~~~~~~ 238 (313)
T 3odt_A 182 IHNDVVRHLAVVDDGHFISCS-----------NDGLIKLVDMHTGD------------VLRTYEGHESFVYCIKLLPNGD 238 (313)
T ss_dssp SCSSCEEEEEEEETTEEEEEE-----------TTSEEEEEETTTCC------------EEEEEECCSSCEEEEEECTTSC
T ss_pred cCcccEEEEEEcCCCeEEEcc-----------CCCeEEEEECCchh------------hhhhhhcCCceEEEEEEecCCC
Confidence 122345555443332233332 68899999653311 11111112235555554322 4
Q ss_pred EEEEecCCcEEEEeCCCCCCCCCCCCCCCcceeeccccCCCCEEEEEEccc-cccccccCCeEEEEecC
Q 006205 311 TVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSY-HVAVLTSKTEVYTWGKG 378 (657)
Q Consensus 311 t~aLt~~G~Vy~wG~n~~GqLG~~~~~~~~p~~v~~~l~~~~V~~Ia~G~~-ht~aLt~~G~vy~WG~n 378 (657)
.++-..+|.|+.|-.... .....+. .....|..++.-.. ..++-..+|.|+.|=..
T Consensus 239 l~~~~~dg~v~iwd~~~~----------~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 239 IVSCGEDRTVRIWSKENG----------SLKQVIT--LPAISIWSVDCMSNGDIIVGSSDNLVRIFSQE 295 (313)
T ss_dssp EEEEETTSEEEEECTTTC----------CEEEEEE--CSSSCEEEEEECTTSCEEEEETTSCEEEEESC
T ss_pred EEEEecCCEEEEEECCCC----------ceeEEEe--ccCceEEEEEEccCCCEEEEeCCCcEEEEeCC
Confidence 556678889999964221 1111111 22345777776544 34555678999999643
No 75
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=51.07 E-value=1.8e+02 Score=28.08 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=12.1
Q ss_pred ceEEEEEcCCcEEEEcCC
Q 006205 138 YHTCAVTLSGDLYTWGDG 155 (657)
Q Consensus 138 ~hs~aLt~dG~Vy~wG~n 155 (657)
.|++++ .+++||.+|-.
T Consensus 55 ~~~~~~-~~~~l~v~GG~ 71 (301)
T 2vpj_A 55 YVASVS-LHDRIYVIGGY 71 (301)
T ss_dssp SCEEEE-ETTEEEEECCB
T ss_pred cccEEE-ECCEEEEEcCC
Confidence 455555 47899999865
No 76
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=50.32 E-value=11 Score=28.85 Aligned_cols=29 Identities=28% Similarity=0.728 Sum_probs=22.3
Q ss_pred CcccCCCCCCCCCcccccccccccccceeeccC
Q 006205 428 DQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSC 460 (657)
Q Consensus 428 d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~C 460 (657)
....|..|+...++. ...| .||..||...
T Consensus 14 ~~~rC~~C~kkvgl~---~f~C-rCg~~FC~~H 42 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVM---GFKC-KCGSTFCGSH 42 (64)
T ss_dssp CSCSCTTTCCCCTTS---CEEC-TTSCEECSSS
T ss_pred cCCcChhhCCccccc---CeEe-ecCCEecccC
Confidence 457899999988743 2569 5999999753
No 77
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=49.78 E-value=9.8 Score=23.44 Aligned_cols=23 Identities=26% Similarity=0.210 Sum_probs=16.1
Q ss_pred hhhhhhhHHHHHHHHHHHhhhhc
Q 006205 634 DAKRTNDSLSQEVIKLRAQVFAF 656 (657)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~ 656 (657)
.|...-..|..|-++|++.|+.|
T Consensus 3 qlnallasleaenkqlkakveel 25 (31)
T 1p9i_A 3 QLNALLASLEAENKQLKAKVEEL 25 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456777888888888876
No 78
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=49.55 E-value=9.7 Score=28.99 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=21.3
Q ss_pred chhhhhhhhHHHHHHHHHHHhhhhc
Q 006205 632 VDDAKRTNDSLSQEVIKLRAQVFAF 656 (657)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (657)
++.|+..|+.|..||..|+.++..|
T Consensus 32 v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 32 TDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999987655
No 79
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=48.10 E-value=2e+02 Score=27.75 Aligned_cols=231 Identities=9% Similarity=-0.106 Sum_probs=0.0
Q ss_pred ecccccccCCCCccccCCCCcEEEEcCCCCCCccCCCCCCCccccccccccCCceeecccCCCCeEEEEec--CC-eEEE
Q 006205 14 SSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACG--GR-HAAL 90 (657)
Q Consensus 14 ~~~~~~~s~G~~~~~l~~~G~Vy~WG~n~~~G~LG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~I~~Ia~G--~~-h~~~ 90 (657)
...+.-+..|........+|.|++|-... .....+..........|..++.. .. ..+.
T Consensus 14 v~~~~~s~~~~~l~~~~~d~~v~iw~~~~-------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 74 (342)
T 1yfq_A 14 ISDIKIIPSKSLLLITSWDGSLTVYKFDI-------------------QAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYV 74 (342)
T ss_dssp EEEEEEEGGGTEEEEEETTSEEEEEEEET-------------------TTTEEEEEEEEECSSCEEEEEEEESSSEEEEE
T ss_pred EEEEEEcCCCCEEEEEcCCCeEEEEEeCC-------------------CCccccceeeeecCCceEEEEECCCCCcEEEE
Q ss_pred EEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccC--CCCcEEEEEeC-CceEEEEEcCCcEEEEcCCCCCCCccCCCCC
Q 006205 91 VNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDAL--SNMNIELVACG-EYHTCAVTLSGDLYTWGDGTYNFGLLGHGNE 167 (657)
Q Consensus 91 lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l--~~~~I~~Va~G-~~hs~aLt~dG~Vy~wG~n~~~~GqLG~~~~ 167 (657)
-..+|.|+.|-....+++ ..-.. ....|..++.. ....+....||.|+.|-..
T Consensus 75 ~~~dg~i~~wd~~~~~~~------------~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~------------ 130 (342)
T 1yfq_A 75 GTVQGEILKVDLIGSPSF------------QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPR------------ 130 (342)
T ss_dssp EETTSCEEEECSSSSSSE------------EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHH------------
T ss_pred EcCCCeEEEEEeccCCce------------EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccc------------
Q ss_pred cceee---------eeeecCCCCCceEEEEeeCCceEEEEecCCcEEEEecCC-CCccCCCCCcccccceeeeccCCCeE
Q 006205 168 VSHWV---------PKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGT-FGVLGHGDRKSVSIPREVESLKGLRT 237 (657)
Q Consensus 168 ~~~~~---------P~~v~~~l~~~~I~~Ia~G~~hs~~Lt~~G~vy~wG~n~-~GqLG~g~~~~~~~P~~v~~l~~~~I 237 (657)
. ...+........|..++......++.+.+|.|+.|-... ... ............|
T Consensus 131 ----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----------~~~~~~~~~~~~i 196 (342)
T 1yfq_A 131 ----NYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD----------NGTIEESGLKYQI 196 (342)
T ss_dssp ----HHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC----------CCEEEECSCSSCE
T ss_pred ----ccccccccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCccccc----------cceeeecCCCCce
Q ss_pred EEEEeCC--CeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCCce-----eecEEEeecCCC---------Ce
Q 006205 238 VRAACGV--WHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAK-----LVPTCVAALVEP---------NF 301 (657)
Q Consensus 238 ~~Ia~G~--~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~-----~~P~~v~~l~~~---------~i 301 (657)
..++... ...++... .+|.++.| +.... ..+......... .|
T Consensus 197 ~~i~~~~~~~~~l~~~~-----------~dg~i~i~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 254 (342)
T 1yfq_A 197 RDVALLPKEQEGYACSS-----------IDGRVAVE-----------FFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPV 254 (342)
T ss_dssp EEEEECSGGGCEEEEEE-----------TTSEEEEE-----------ECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCE
T ss_pred eEEEECCCCCCEEEEEe-----------cCCcEEEE-----------EEcCCCcccccccceeeecccccccccccceeE
Q ss_pred EEEEc--cCcEEEEEecCCcEEEE
Q 006205 302 CRVAC--GHSLTVALTTSGHVYTM 323 (657)
Q Consensus 302 ~~I~~--G~~~t~aLt~~G~Vy~w 323 (657)
..++. .....+.-..+|.|+.|
T Consensus 255 ~~~~~s~~~~~l~~~~~dg~i~vw 278 (342)
T 1yfq_A 255 NSIEFSPRHKFLYTAGSDGIISCW 278 (342)
T ss_dssp EEEEECTTTCCEEEEETTSCEEEE
T ss_pred EEEEEcCCCCEEEEecCCceEEEE
No 80
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=47.88 E-value=13 Score=24.66 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=18.2
Q ss_pred chhhhhhhhHHHHHHHHHHHhh
Q 006205 632 VDDAKRTNDSLSQEVIKLRAQV 653 (657)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~ 653 (657)
+++|...|..|.+||.+||+-+
T Consensus 10 VEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 10 VEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHh
Confidence 5788888889999999998744
No 81
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=46.91 E-value=2.3e+02 Score=28.12 Aligned_cols=106 Identities=10% Similarity=0.126 Sum_probs=57.3
Q ss_pred CeEEEEec--CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeCCc-eEEEEEcCCcEEEEc
Q 006205 77 DVQNIACG--GRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEY-HTCAVTLSGDLYTWG 153 (657)
Q Consensus 77 ~I~~Ia~G--~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~~-hs~aLt~dG~Vy~wG 153 (657)
.|..++.. ....+....+|.|+.|-..... ....+.. ....|..++.... ..++...+|.|+.|-
T Consensus 249 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----------~~~~~~~-~~~~i~~~~~~~~~~l~~~~~d~~i~i~d 316 (425)
T 1r5m_A 249 PISVLEFNDTNKLLLSASDDGTLRIWHGGNGN-----------SQNCFYG-HSQSIVSASWVGDDKVISCSMDGSVRLWS 316 (425)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEECSSSBS-----------CSEEECC-CSSCEEEEEEETTTEEEEEETTSEEEEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCEEEEEECCCCc-----------cceEecC-CCccEEEEEECCCCEEEEEeCCCcEEEEE
Confidence 45555543 4456666778999999643311 1111111 2335666655433 666677899999995
Q ss_pred CCCCCCCccCCCCCcceeeeeeecCCCCCceEEEEeeC--CceEEEEecCCcEEEEec
Q 006205 154 DGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCG--PWHTAVVTSAGQLFTFGD 209 (657)
Q Consensus 154 ~n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~G--~~hs~~Lt~~G~vy~wG~ 209 (657)
... + . ....+.. ....|..++.. ....++-..+|.|+.|-.
T Consensus 317 ~~~---~---------~-~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~ 359 (425)
T 1r5m_A 317 LKQ---N---------T-LLALSIV--DGVPIFAGRISQDGQKYAVAFMDGQVNVYDL 359 (425)
T ss_dssp TTT---T---------E-EEEEEEC--TTCCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred CCC---C---------c-EeEeccc--CCccEEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 441 1 0 1111111 12346665554 345556677899999864
No 82
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=46.87 E-value=2.5e+02 Score=28.66 Aligned_cols=236 Identities=6% Similarity=-0.010 Sum_probs=115.5
Q ss_pred CeEEEEec----CCeEEEEEcCCcEEEEeCCCCCCcCCCCCC---------CcccceEeccC--CCCcEEEEEeCCceEE
Q 006205 77 DVQNIACG----GRHAALVNKQGEVFSWGEESGGRLGHGVDS---------DVLHPKLIDAL--SNMNIELVACGEYHTC 141 (657)
Q Consensus 77 ~I~~Ia~G----~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~---------~~~~P~~v~~l--~~~~I~~Va~G~~hs~ 141 (657)
.|..++.- ....+.-..||.|..|-......+...... ....+..+..+ ....|..++......+
T Consensus 205 ~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 284 (464)
T 3v7d_B 205 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVV 284 (464)
T ss_dssp CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEE
T ss_pred ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEE
Confidence 45555543 245666678899999986553322111000 00111111111 2346777777777888
Q ss_pred EEEcCCcEEEEcCCCCCCCccCCCCCcceeeeeeecCCCCCceEEEEeeC--CceEEEEecCCcEEEEecCCCCccCCCC
Q 006205 142 AVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCG--PWHTAVVTSAGQLFTFGDGTFGVLGHGD 219 (657)
Q Consensus 142 aLt~dG~Vy~wG~n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~G--~~hs~~Lt~~G~vy~wG~n~~GqLG~g~ 219 (657)
.-..||.|+.|-... +. ....+.. ....|..++.. ....+.-..+|.|+.|-..+ |
T Consensus 285 ~~~~d~~i~vwd~~~---~~----------~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~------ 342 (464)
T 3v7d_B 285 SGSYDNTLIVWDVAQ---MK----------CLYILSG--HTDRIYSTIYDHERKRCISASMDTTIRIWDLEN-G------ 342 (464)
T ss_dssp EEETTSCEEEEETTT---TE----------EEEEECC--CSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-T------
T ss_pred EEeCCCeEEEEECCC---Cc----------EEEEecC--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-C------
Confidence 888899999995441 10 0111211 12346555543 34566667889999995322 1
Q ss_pred Ccccccceeeecc--CCCeEEEEEeCCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeecC
Q 006205 220 RKSVSIPREVESL--KGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALV 297 (657)
Q Consensus 220 ~~~~~~P~~v~~l--~~~~I~~Ia~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~ 297 (657)
+.+..+ ....|..++....+.+... .+|.|..|-..... .........
T Consensus 343 -------~~~~~~~~h~~~v~~~~~~~~~l~s~s------------~dg~v~vwd~~~~~-----------~~~~~~~~~ 392 (464)
T 3v7d_B 343 -------ELMYTLQGHTALVGLLRLSDKFLVSAA------------ADGSIRGWDANDYS-----------RKFSYHHTN 392 (464)
T ss_dssp -------EEEEEECCCSSCEEEEEECSSEEEEEE------------TTSEEEEEETTTCC-----------EEEEEECTT
T ss_pred -------cEEEEEeCCCCcEEEEEEcCCEEEEEe------------CCCcEEEEECCCCc-----------eeeeecCCC
Confidence 112111 1234666666544443333 68999999654321 111111111
Q ss_pred CCCeEEEEccCcEEEEEecCCcEEEEeCCCCCCCCCCCCCCCcceeeccccCCCCEEEEEEccccc-cccccCCeEEEEe
Q 006205 298 EPNFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSYHV-AVLTSKTEVYTWG 376 (657)
Q Consensus 298 ~~~i~~I~~G~~~t~aLt~~G~Vy~wG~n~~GqLG~~~~~~~~p~~v~~~l~~~~V~~Ia~G~~ht-~aLt~~G~vy~WG 376 (657)
...+..+..... .++...+|.|+.|-......+ ... .......|..|+.-.... ++...+|.+|.|-
T Consensus 393 ~~~~~~~~~~~~-~l~~~~dg~i~iwd~~~g~~~----------~~~-~~~~~~~v~~v~~~~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 393 LSAITTFYVSDN-ILVSGSENQFNIYNLRSGKLV----------HAN-ILKDADQIWSVNFKGKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp CCCEEEEEECSS-EEEEEETTEEEEEETTTCCEE----------ESC-TTTTCSEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred CccEEEEEeCCC-EEEEecCCeEEEEECCCCcEE----------ehh-hccCCCcEEEEEecCCEEEEEEEeCCeEEEEE
Confidence 223344444333 344445888998864321111 000 011234466666643333 3334566666653
No 83
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=46.68 E-value=2.1e+02 Score=27.69 Aligned_cols=109 Identities=12% Similarity=-0.075 Sum_probs=60.7
Q ss_pred CeEEEEecCC------eEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeC---CceEEEEEcCC
Q 006205 77 DVQNIACGGR------HAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACG---EYHTCAVTLSG 147 (657)
Q Consensus 77 ~I~~Ia~G~~------h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G---~~hs~aLt~dG 147 (657)
.|..++.... ..+.-..+|.|..|-...... ...+. .....|..++.. ....+.-..||
T Consensus 71 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-----------~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg 138 (366)
T 3k26_A 71 NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQC-----------IKHYV-GHGNAINELKFHPRDPNLLLSVSKDH 138 (366)
T ss_dssp CEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCE-----------EEEEE-SCCSCEEEEEECSSCTTEEEEEETTS
T ss_pred cEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceE-----------eeeec-CCCCcEEEEEECCCCCCEEEEEeCCC
Confidence 4666655433 455667889999996543211 11121 123467777764 35566667899
Q ss_pred cEEEEcCCCCCCCccCCCCCcceeeeeeecC-CCCCceEEEEeeC--CceEEEEecCCcEEEEecC
Q 006205 148 DLYTWGDGTYNFGLLGHGNEVSHWVPKRVNG-PLEGIHVSSISCG--PWHTAVVTSAGQLFTFGDG 210 (657)
Q Consensus 148 ~Vy~wG~n~~~~GqLG~~~~~~~~~P~~v~~-~l~~~~I~~Ia~G--~~hs~~Lt~~G~vy~wG~n 210 (657)
.|+.|-... +. ....+.. ......|..++.. ..+.+....+|.|+.|-..
T Consensus 139 ~i~iwd~~~---~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 191 (366)
T 3k26_A 139 ALRLWNIQT---DT----------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 191 (366)
T ss_dssp CEEEEETTT---TE----------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESC
T ss_pred eEEEEEeec---Ce----------EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECC
Confidence 999995441 10 1111100 1123457777654 3455566678999999643
No 84
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=45.76 E-value=15 Score=24.07 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=17.7
Q ss_pred chhhhhhhhHHHHHHHHHHHhh
Q 006205 632 VDDAKRTNDSLSQEVIKLRAQV 653 (657)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~ 653 (657)
+++|-..|+.|..||.+||+-+
T Consensus 10 VEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 10 VXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHH
Confidence 5677788889999999998743
No 85
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=44.49 E-value=14 Score=27.08 Aligned_cols=27 Identities=0% Similarity=-0.076 Sum_probs=20.8
Q ss_pred ccchhhhhhhhHHHHHHHHHHHhhhhc
Q 006205 630 IVVDDAKRTNDSLSQEVIKLRAQVFAF 656 (657)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (657)
+.+|.|+.-|+-|.+++..|++|++.|
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888888888777654
No 86
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=44.45 E-value=3.3 Score=31.22 Aligned_cols=29 Identities=31% Similarity=0.837 Sum_probs=23.2
Q ss_pred ccCCCCCCCCCcccccccccccccceeeccC
Q 006205 430 SMCSGCRLPFNNFKRKRHNCYNCGLVFCHSC 460 (657)
Q Consensus 430 ~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~C 460 (657)
..|-+|..+|.. ..+..|..|...||.+|
T Consensus 16 ~~C~~C~~~~~~--~~~y~C~~C~~~FC~dC 44 (59)
T 1z60_A 16 RFCYGCQGELKD--QHVYVCAVCQNVFCVDC 44 (59)
T ss_dssp CEETTTTEECTT--SEEECCTTTTCCBCHHH
T ss_pred CcccccCcccCC--CccEECCccCcCcccch
Confidence 469999999852 22467999999999988
No 87
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=44.33 E-value=2.8e+02 Score=28.37 Aligned_cols=260 Identities=7% Similarity=0.009 Sum_probs=119.5
Q ss_pred CeEEEEecCC---eEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEe---CCceEEEEEcCCcEE
Q 006205 77 DVQNIACGGR---HAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVAC---GEYHTCAVTLSGDLY 150 (657)
Q Consensus 77 ~I~~Ia~G~~---h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~---G~~hs~aLt~dG~Vy 150 (657)
.|..|+.... ..+....+|.|+.|-.......... .........+.. ....|..++. +..+.+.-..+|.|+
T Consensus 130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~-~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 207 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP-SGECQPDLRLRG-HQKEGYGLSWNPNLNGYLLSASDDHTIC 207 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCT-TCCCCCSEEEEC-CSSCCCCEEECTTSTTEEEEECTTSCEE
T ss_pred cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCc-cccCCCcEEecC-CCCCeEEEEeCCCCCCeEEEEeCCCeEE
Confidence 4556665543 3444467899999986542111000 000011111111 1223444443 233555666789999
Q ss_pred EEcCCCCCCCccCCCCCcceeeeeeecCCCCCceEEEEee---CCceEEEEecCCcEEEEecCCCCccCCCCCcccccce
Q 006205 151 TWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISC---GPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPR 227 (657)
Q Consensus 151 ~wG~n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~---G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~ 227 (657)
.|-.... .. ......+..... .....|..|+. +....+....+|.|+.|-...... ..+.
T Consensus 208 vwd~~~~--~~-----~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~---------~~~~ 270 (430)
T 2xyi_A 208 LWDINAT--PK-----EHRVIDAKNIFT-GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT---------SKPS 270 (430)
T ss_dssp EEETTSC--CB-----GGGEEECSEEEC-CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS---------SSCS
T ss_pred EEeCCCC--CC-----CCceeccceeec-CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC---------Ccce
Confidence 9976521 10 011111111111 12235666665 344455566899999996543210 0111
Q ss_pred -eeeccCCCeEEEEEeCCCe--eEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeecCCCCeEEE
Q 006205 228 -EVESLKGLRTVRAACGVWH--TAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRV 304 (657)
Q Consensus 228 -~v~~l~~~~I~~Ia~G~~h--s~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~~~~i~~I 304 (657)
.+. .....|..++..... .++... .+|.|..|-....++ |..........|..|
T Consensus 271 ~~~~-~~~~~v~~i~~~p~~~~~l~tg~-----------~dg~v~vwd~~~~~~-----------~~~~~~~h~~~v~~i 327 (430)
T 2xyi_A 271 HTVD-AHTAEVNCLSFNPYSEFILATGS-----------ADKTVALWDLRNLKL-----------KLHSFESHKDEIFQV 327 (430)
T ss_dssp EEEE-CCSSCEEEEEECSSCTTEEEEEE-----------TTSEEEEEETTCTTS-----------CSEEEECCSSCEEEE
T ss_pred eEee-cCCCCeEEEEeCCCCCCEEEEEe-----------CCCeEEEEeCCCCCC-----------CeEEeecCCCCEEEE
Confidence 111 122346666654432 333332 689999997644221 111111112355555
Q ss_pred Ecc---CcEEEEEecCCcEEEEeCCCCCCCCCCCC-CCCcceeeccc-cCCCCEEEEEEcccc---ccccccCCeEEEEe
Q 006205 305 ACG---HSLTVALTTSGHVYTMGSPVYGQLGNPQA-DGKLPNRVEGK-LSKSFVEEIACGSYH---VAVLTSKTEVYTWG 376 (657)
Q Consensus 305 ~~G---~~~t~aLt~~G~Vy~wG~n~~GqLG~~~~-~~~~p~~v~~~-l~~~~V~~Ia~G~~h---t~aLt~~G~vy~WG 376 (657)
... ....+.-..+|.|..|--...+..-.... ....|..+... -....|..++..... .+....+|.|..|-
T Consensus 328 ~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 328 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp EECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred EECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 543 23345556788899987544321110000 00001111111 123447777766543 33345789999996
Q ss_pred cC
Q 006205 377 KG 378 (657)
Q Consensus 377 ~n 378 (657)
..
T Consensus 408 ~~ 409 (430)
T 2xyi_A 408 MA 409 (430)
T ss_dssp EC
T ss_pred cc
Confidence 54
No 88
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=44.16 E-value=13 Score=29.69 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=20.0
Q ss_pred chhhhhhhhHHHHHHHHHHHhhhhc
Q 006205 632 VDDAKRTNDSLSQEVIKLRAQVFAF 656 (657)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (657)
++.|.+.|..|..||..|+.++..|
T Consensus 45 ~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 45 VLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888877654
No 89
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=43.35 E-value=2.6e+02 Score=27.71 Aligned_cols=199 Identities=10% Similarity=0.022 Sum_probs=90.5
Q ss_pred CeEEEEec--CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEec----cCCCCcEEEEE-eCCceEEEEEcCCcE
Q 006205 77 DVQNIACG--GRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLID----ALSNMNIELVA-CGEYHTCAVTLSGDL 149 (657)
Q Consensus 77 ~I~~Ia~G--~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~----~l~~~~I~~Va-~G~~hs~aLt~dG~V 149 (657)
.|..++.. ....+....+|.|+.|-......+..-. ........+. ......+..++ ......++...+|.|
T Consensus 151 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 229 (425)
T 1r5m_A 151 PIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFE-LKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAI 229 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEEC-CC---------------CCCBSCCEEEETTEEEEECGGGCE
T ss_pred cEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee-ccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeE
Confidence 46666654 4456666788999999764422111000 0000000000 00000011111 123456667778999
Q ss_pred EEEcCCCCCCCccCCCCCcceeeeeeecCCCCCceEEEEee--CCceEEEEecCCcEEEEecCCCCccCCCCCcccccce
Q 006205 150 YTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISC--GPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPR 227 (657)
Q Consensus 150 y~wG~n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~--G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~ 227 (657)
+.|-... +. . ...+.. ....|..++. .....+....+|.|+.|-.... ....
T Consensus 230 ~~~d~~~---~~-----~-----~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-----------~~~~ 283 (425)
T 1r5m_A 230 FVYQITE---KT-----P-----TGKLIG--HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG-----------NSQN 283 (425)
T ss_dssp EEEETTC---SS-----C-----SEEECC--CSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB-----------SCSE
T ss_pred EEEEcCC---Cc-----e-----eeeecc--CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC-----------ccce
Confidence 9996541 10 0 011111 1224555443 3345556667889998853221 0011
Q ss_pred eeeccCCCeEEEEEeCCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeecCCCCeEEEEcc
Q 006205 228 EVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACG 307 (657)
Q Consensus 228 ~v~~l~~~~I~~Ia~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~~~~i~~I~~G 307 (657)
.+.. ....|..++......++.. ..++.|+.|-.... . +..........|..++..
T Consensus 284 ~~~~-~~~~i~~~~~~~~~~l~~~-----------~~d~~i~i~d~~~~----------~--~~~~~~~~~~~i~~~~~s 339 (425)
T 1r5m_A 284 CFYG-HSQSIVSASWVGDDKVISC-----------SMDGSVRLWSLKQN----------T--LLALSIVDGVPIFAGRIS 339 (425)
T ss_dssp EECC-CSSCEEEEEEETTTEEEEE-----------ETTSEEEEEETTTT----------E--EEEEEECTTCCEEEEEEC
T ss_pred EecC-CCccEEEEEECCCCEEEEE-----------eCCCcEEEEECCCC----------c--EeEecccCCccEEEEEEc
Confidence 1111 1234555555443322222 16889999965321 0 111111123355555443
Q ss_pred --CcEEEEEecCCcEEEEeCC
Q 006205 308 --HSLTVALTTSGHVYTMGSP 326 (657)
Q Consensus 308 --~~~t~aLt~~G~Vy~wG~n 326 (657)
....++-..+|.|+.|-..
T Consensus 340 ~~~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 340 QDGQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp TTSSEEEEEETTSCEEEEECH
T ss_pred CCCCEEEEEECCCeEEEEECC
Confidence 3345556678889988653
No 90
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=42.48 E-value=14 Score=30.15 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=19.4
Q ss_pred chhhhhhhhHHHHHHHHHHHhhhhc
Q 006205 632 VDDAKRTNDSLSQEVIKLRAQVFAF 656 (657)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (657)
++.|.+.|+.|..||..|+.++..|
T Consensus 45 ~~~Le~EN~~Lr~~v~~L~~E~~~L 69 (87)
T 1hjb_A 45 VLELTAENERLQKKVEQLSRELSTL 69 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888877654
No 91
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=42.42 E-value=9.6 Score=38.83 Aligned_cols=75 Identities=21% Similarity=0.386 Sum_probs=43.9
Q ss_pred EcCCCceeeeeee-ccccccCcccCCCCCCCCCcccccccccccccceeeccCCCccccccccCC-----C-CCCCeeeC
Q 006205 409 ACGTNFTAAICLH-KWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAP-----N-PNKPYRVC 481 (657)
Q Consensus 409 a~G~~hT~al~~~-kwv~~~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~-----~-~~~~~RvC 481 (657)
.||+..++.+... .-..+...-.|+.|+..+. |. |..|.+||.- ++.....+.. . .....-+|
T Consensus 187 vCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~-~~--R~~C~~Cg~~-------~~l~y~~~e~~~~~~~~~~~r~e~C 256 (309)
T 2fiy_A 187 ACGSPPMAGMIRQGGKETGLRYLSCSLCACEWH-YV--RIKCSHCEES-------KHLAYLSLEHDGQPAEKAVLRAETC 256 (309)
T ss_dssp TTCCCEEEEEEEC----CCEEEEEETTTCCEEE-CC--TTSCSSSCCC-------SCCEEECCCC-CCCSTTCSEEEEEE
T ss_pred CCCCcCceeEEeecCCCCCcEEEEeCCCCCEEe-ec--CcCCcCCCCC-------CCeeEEEecCccccCCCcceEEEEc
Confidence 5777777765431 1112233467888988765 43 5678888874 2333332222 1 23457789
Q ss_pred cchHHhhhcccc
Q 006205 482 DNCFNKLRKTFD 493 (657)
Q Consensus 482 ~~C~~~~~~~~~ 493 (657)
+.|..-++..+.
T Consensus 257 ~~C~~YlK~~~~ 268 (309)
T 2fiy_A 257 PSCQGYLKQFYL 268 (309)
T ss_dssp TTTTEEEEEEET
T ss_pred ccccchHhhhhh
Confidence 999988876543
No 92
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=41.82 E-value=2.5e+02 Score=27.10 Aligned_cols=84 Identities=14% Similarity=0.099 Sum_probs=40.6
Q ss_pred EeecCCCCeEEEEccCcEEEEEecC-Cc-EEEEeCCCCCCCCCCCCCCCcceeeccccCCCCEEEEEE--c---------
Q 006205 293 VAALVEPNFCRVACGHSLTVALTTS-GH-VYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIAC--G--------- 359 (657)
Q Consensus 293 v~~l~~~~i~~I~~G~~~t~aLt~~-G~-Vy~wG~n~~GqLG~~~~~~~~p~~v~~~l~~~~V~~Ia~--G--------- 359 (657)
+..+.+.++.-...+....++++.+ |+ +|.++.+... ......|.-+.. +.+..+ -|+. |
T Consensus 170 ~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~-----~~~l~~~~~~~~-~~~G~i-~v~~~~g~~~~~~~~~ 242 (276)
T 3no2_A 170 SAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIE-----GVQLFFVAQLFP-LQNGGL-YICNWQGHDREAGKGK 242 (276)
T ss_dssp EEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSB-----SCCCSEEEEEEE-CTTSCE-EEEEECTTCTTGGGSC
T ss_pred eeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCC-----CccccccccceE-cCCCCE-EEEeccCccccccccC
Confidence 3334444555444444456777776 65 5777643211 001122332222 223333 2333 2
Q ss_pred cccccccccCCeEEEEecCCCCCCC
Q 006205 360 SYHVAVLTSKTEVYTWGKGANGRLG 384 (657)
Q Consensus 360 ~~ht~aLt~~G~vy~WG~n~~GqLG 384 (657)
..+.+.++.+|+| .|=.+...+.|
T Consensus 243 ~~~~~~~~~~g~~-~W~~~~~~~~~ 266 (276)
T 3no2_A 243 HPQLVEIDSEGKV-VWQLNDKVKFG 266 (276)
T ss_dssp CCSEEEECTTSBE-EEEECCTTTSC
T ss_pred CceEEEECCCCCE-EEEecCccccc
Confidence 2246777788876 66666655555
No 93
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=41.62 E-value=23 Score=21.31 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=21.3
Q ss_pred chhhhhhhhHHHHHHHHHHHhhhhc
Q 006205 632 VDDAKRTNDSLSQEVIKLRAQVFAF 656 (657)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (657)
+|.|.-.|+.|.|.+..|+..+.+|
T Consensus 2 idalefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 2 IDALEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHhccHHHHHHHHHHHHHHHHh
Confidence 5778889999999999999887765
No 94
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=40.58 E-value=11 Score=24.81 Aligned_cols=18 Identities=50% Similarity=0.626 Sum_probs=10.6
Q ss_pred chhhhhhhhHHHHHHHHH
Q 006205 632 VDDAKRTNDSLSQEVIKL 649 (657)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~ 649 (657)
+|+||+-|.+|.++|..|
T Consensus 16 IddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 16 IDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 566666666666655433
No 95
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=40.01 E-value=17 Score=27.67 Aligned_cols=25 Identities=12% Similarity=0.284 Sum_probs=19.7
Q ss_pred chhhhhhhhHHHHHHHHHHHhhhhc
Q 006205 632 VDDAKRTNDSLSQEVIKLRAQVFAF 656 (657)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (657)
+++|++.|+.|..+|..|+.++..|
T Consensus 32 ~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 32 CKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888876543
No 96
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=39.96 E-value=3e+02 Score=27.47 Aligned_cols=222 Identities=9% Similarity=0.014 Sum_probs=110.3
Q ss_pred EEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeC-----CceEEEEEcCCcEEEEcCC
Q 006205 81 IACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACG-----EYHTCAVTLSGDLYTWGDG 155 (657)
Q Consensus 81 Ia~G~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G-----~~hs~aLt~dG~Vy~wG~n 155 (657)
++.+..+.+++|+.|.+|..-...--..|....- ......+...++..|+.+... ..+.+++|++|.++..--.
T Consensus 54 ~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G-~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~ 132 (312)
T 1suu_A 54 CVNTHDYLFMISNEGKLYLINAYEIKDSSRASKG-QNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFEST 132 (312)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCC--------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGG
T ss_pred EECCCCEEEEEECCCeEEEEEHHHCCCCCccCCC-cChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHH
Confidence 4556778899999999999865432111111000 011112333346677777654 4568999999999988655
Q ss_pred CCCCCccCCCCCcceeeeeeecCCCCCceEEEEe--eCCceEEEEecCCcEEEEecCCCCccCCCCCcccccceeeeccC
Q 006205 156 TYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSIS--CGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLK 233 (657)
Q Consensus 156 ~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia--~G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~ 233 (657)
.+.... +.+ .......++..++.+. .+..+.+++|++|.++-+-..+.-..|....-. +.+....
T Consensus 133 ~~~~~r-~~G--------~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv----~~i~L~~ 199 (312)
T 1suu_A 133 DFKAVK-SRG--------VIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGV----CGMKLKE 199 (312)
T ss_dssp GGCC-----C--------EECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCE----ECCCCCT
T ss_pred HhhccC-CCc--------EEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCe----EeEEeCC
Confidence 321110 111 1111112344555543 356789999999999998765543333321110 1111112
Q ss_pred CCeEEEEEe--CCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeecCCCCeEEE--EccCc
Q 006205 234 GLRTVRAAC--GVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRV--ACGHS 309 (657)
Q Consensus 234 ~~~I~~Ia~--G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~~~~i~~I--~~G~~ 309 (657)
+..|+.+.. ...+-++++ .+|.+...-..++-..+.+....... . +.......++.+ .....
T Consensus 200 ~d~vv~~~~v~~~~~l~~vt------------~~G~~kr~~~~e~~~~~R~~kGv~~~-~-~~k~~~~~lv~~~~~~~~~ 265 (312)
T 1suu_A 200 GDLFVKVLSVKENPYLLIVS------------ENGYGKRLNMSKISELKRGATGYTSY-K-KSDKKAGSVVDAIAVSEDD 265 (312)
T ss_dssp TCCEEEEEECTTCSEEEEEE------------TTSEEEEEEGGGSCBCCTTCCCEECS-C-TTCTTTCSEEEEEEECTTC
T ss_pred CCEEEEEEEECCCCeEEEEE------------CCCceEEEEHHHhcccCCCCCCEEee-E-ccCCCCCeEEEEEEeCCCC
Confidence 334554432 233444444 46766666555554444332211110 0 000011233322 23556
Q ss_pred EEEEEecCCcEEEEeCCCCCC
Q 006205 310 LTVALTTSGHVYTMGSPVYGQ 330 (657)
Q Consensus 310 ~t~aLt~~G~Vy~wG~n~~Gq 330 (657)
..+++|+.|.+.-.-.++.-.
T Consensus 266 ~l~~~t~~g~~~r~~~~~i~~ 286 (312)
T 1suu_A 266 EILLVSKRSKALRTVAGKVSE 286 (312)
T ss_dssp EEEEEETTCEEEEEEGGGSCB
T ss_pred EEEEEeCCCeEEEEEcccCCc
Confidence 677888888777665544433
No 97
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.76 E-value=16 Score=28.98 Aligned_cols=59 Identities=19% Similarity=0.328 Sum_probs=37.9
Q ss_pred ccccccCcccCCCCCCCCCcc---------ccc-ccccccccceeeccCCCccccccccCCCCCCCeeeCcchHHhhhc
Q 006205 422 KWVSGVDQSMCSGCRLPFNNF---------KRK-RHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRK 490 (657)
Q Consensus 422 kwv~~~d~~~C~~C~~~F~~f---------~rk-rh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~~ 490 (657)
.|..+.+...|..|...|... ... ...-..||-.||..|-..-.. ....|.-|...+..
T Consensus 8 ~w~~~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~----------~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 8 MWSWDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK----------QNNRCPLCQQDWVV 76 (81)
T ss_dssp CCCCSCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT----------TCCBCTTTCCBCCE
T ss_pred EeeecCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH----------hCCCCCCcCCCcch
Confidence 377777888999999999631 111 112235999999999655421 12478888766543
No 98
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=38.71 E-value=22 Score=23.26 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=18.1
Q ss_pred chhhhhhhhHHHHHHHHHHHhh
Q 006205 632 VDDAKRTNDSLSQEVIKLRAQV 653 (657)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~ 653 (657)
+++|-..|..|..||.+|++-+
T Consensus 10 VEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 10 VEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHh
Confidence 5778888889999999998754
No 99
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=38.48 E-value=22 Score=23.05 Aligned_cols=22 Identities=0% Similarity=0.152 Sum_probs=17.0
Q ss_pred chhhhhhhhHHHHHHHHHHHhh
Q 006205 632 VDDAKRTNDSLSQEVIKLRAQV 653 (657)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~ 653 (657)
+++|-..|..|..||.+||+=+
T Consensus 9 vEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 9 LXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 4667777888888999888743
No 100
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=38.47 E-value=19 Score=28.23 Aligned_cols=29 Identities=24% Similarity=0.659 Sum_probs=22.2
Q ss_pred CcccCCCCCCCCCcccccccccccccceeeccC
Q 006205 428 DQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSC 460 (657)
Q Consensus 428 d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~C 460 (657)
....|..|+...++. ...|+ ||..||...
T Consensus 24 ~~~RC~~C~kkvgL~---~f~Cr-Cg~~FCs~H 52 (74)
T 1wfp_A 24 TATRCLSCNKKVGVT---GFKCR-CGSTFCGTH 52 (74)
T ss_dssp CCCBCSSSCCBCTTT---CEECT-TSCEECTTT
T ss_pred cCccchhhcCccccc---ceEec-cCCEecccc
Confidence 457899999988843 26695 999999753
No 101
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=38.00 E-value=14 Score=28.83 Aligned_cols=25 Identities=28% Similarity=0.204 Sum_probs=17.6
Q ss_pred chhhhhhhhHHHHHHHHHHHhhhhc
Q 006205 632 VDDAKRTNDSLSQEVIKLRAQVFAF 656 (657)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (657)
+++|...++.|+.|+..|+.||..|
T Consensus 38 v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 38 VVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777654
No 102
>3zwh_Q Myosin-9; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens} PDB: 2lnk_C
Probab=37.69 E-value=20 Score=25.31 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.6
Q ss_pred chhhhhhhhHHHHHHHHHHHhhh
Q 006205 632 VDDAKRTNDSLSQEVIKLRAQVF 654 (657)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~ 654 (657)
.|++.+.+|++..||.+||++.+
T Consensus 8 LeEa~Erae~ae~~vnkLR~k~R 30 (45)
T 3zwh_Q 8 LEDATETADAMNREVSSLKNKLR 30 (45)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 58889999999999999999764
No 103
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=37.63 E-value=2.7e+02 Score=26.25 Aligned_cols=15 Identities=13% Similarity=0.127 Sum_probs=9.6
Q ss_pred cccCCCCcEEEEcCC
Q 006205 27 DDGDALGDVFIWGEG 41 (657)
Q Consensus 27 ~~l~~~G~Vy~WG~n 41 (657)
.+++.+|.+|+-+..
T Consensus 35 v~~~~~g~l~v~~~~ 49 (286)
T 1q7f_A 35 VAVNAQNDIIVADTN 49 (286)
T ss_dssp EEECTTCCEEEEEGG
T ss_pred EEECCCCCEEEEECC
Confidence 456677777776543
No 104
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=37.21 E-value=24 Score=23.13 Aligned_cols=21 Identities=5% Similarity=0.123 Sum_probs=16.9
Q ss_pred chhhhhhhhHHHHHHHHHHHh
Q 006205 632 VDDAKRTNDSLSQEVIKLRAQ 652 (657)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~ 652 (657)
+++|-..|..|.+||.+|++=
T Consensus 10 VEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 10 GEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 467777888899999999873
No 105
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=37.10 E-value=18 Score=27.52 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=18.4
Q ss_pred chhhhhhhhHHHHHHHHHHHhhh
Q 006205 632 VDDAKRTNDSLSQEVIKLRAQVF 654 (657)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~ 654 (657)
++.|+..|+.|..||.+|+.|+.
T Consensus 39 v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 39 VEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 56788899999999999998874
No 106
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=36.93 E-value=4e+02 Score=28.08 Aligned_cols=56 Identities=11% Similarity=0.118 Sum_probs=36.3
Q ss_pred cCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeCCceEEEEEcCCcEEEEc
Q 006205 84 GGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWG 153 (657)
Q Consensus 84 G~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG 153 (657)
.....+....+|.|+.|-.... .+..........|..++. .. .+.-..||.|+.|-
T Consensus 308 ~~~~l~~~~~~g~i~~~d~~~~------------~~~~~~~~~~~~v~~~~~-~~-l~~~~~dg~i~~w~ 363 (615)
T 1pgu_A 308 GNGRIISLSLDGTLNFYELGHD------------EVLKTISGHNKGITALTV-NP-LISGSYDGRIMEWS 363 (615)
T ss_dssp ETTEEEEEETTSCEEEEETTEE------------EEEEEECCCSSCEEEEET-TT-TEEEETTSCEEETT
T ss_pred CCCeEEEEECCCCEEEEECCCC------------cEEEEEeCCCCCEEEEEe-cC-cEEECCCCeEEEEE
Confidence 5667777788999999974431 111111112346778887 66 66777899999994
No 107
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=36.44 E-value=3.2e+02 Score=26.82 Aligned_cols=249 Identities=7% Similarity=-0.012 Sum_probs=118.5
Q ss_pred CCeEEEEe---cCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeCC-----ceEEEEEcCC
Q 006205 76 LDVQNIAC---GGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGE-----YHTCAVTLSG 147 (657)
Q Consensus 76 ~~I~~Ia~---G~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~-----~hs~aLt~dG 147 (657)
..|..|+. +....+....+|.|..|-...... ...+. . ...+..+.... ...++-..+|
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----------~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT-----------ADVFN-F-EETVYSHHMSPVSTKHCLVAVGTRGP 166 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE-----------EEEEE-C-SSCEEEEEECSSCSSCCEEEEEESSS
T ss_pred CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc-----------ceecc-C-CCceeeeEeecCCCCCcEEEEEcCCC
Confidence 35777775 445666777899999997543111 11111 1 22444444432 2556667889
Q ss_pred cEEEEcCCCCCCCccCCCCCcceeeeeeecCCCCCceEEEEeeCCc---eEEEEecCCcEEEEecCCCCcc-CCC---CC
Q 006205 148 DLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPW---HTAVVTSAGQLFTFGDGTFGVL-GHG---DR 220 (657)
Q Consensus 148 ~Vy~wG~n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~G~~---hs~~Lt~~G~vy~wG~n~~GqL-G~g---~~ 220 (657)
.|+.|-... +. . ...+.. ....|..++.... ..+.-..+|.|+.|-....... -.- ..
T Consensus 167 ~v~~~d~~~---~~-----~-----~~~~~~--~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 231 (408)
T 4a11_B 167 KVQLCDLKS---GS-----C-----SHILQG--HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNG 231 (408)
T ss_dssp SEEEEESSS---SC-----C-----CEEECC--CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTT
T ss_pred eEEEEeCCC---cc-----e-----eeeecC--CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccc
Confidence 999996541 11 0 111211 1234666655433 2455678899999965432211 000 00
Q ss_pred cccccceeeeccCCCeEEEEEeCCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeecCCCC
Q 006205 221 KSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPN 300 (657)
Q Consensus 221 ~~~~~P~~v~~l~~~~I~~Ia~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~~~~ 300 (657)
.....+..........|..++.......+++- ..+|.|+.|-......+-.-... ..........
T Consensus 232 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----------~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~~~~~ 296 (408)
T 4a11_B 232 KKSQAVESANTAHNGKVNGLCFTSDGLHLLTV----------GTDNRMRLWNSSNGENTLVNYGK-----VCNNSKKGLK 296 (408)
T ss_dssp CSCCCTTTSSCSCSSCEEEEEECTTSSEEEEE----------ETTSCEEEEETTTCCBCCCCCCC-----CCCCCSSCCC
T ss_pred ccceeeccccccccCceeEEEEcCCCCEEEEe----------cCCCeEEEEECCCCccceecccc-----ccccccccce
Confidence 00000000001112356677665544333321 16899999976443221110000 0000001112
Q ss_pred eEEEEccCcEEEEEecCCcEEEEeCCCCCCCCCCCCCCCcceeeccccCCCCEEEEEEcccc--ccccccCCeEEEEecC
Q 006205 301 FCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSYH--VAVLTSKTEVYTWGKG 378 (657)
Q Consensus 301 i~~I~~G~~~t~aLt~~G~Vy~wG~n~~GqLG~~~~~~~~p~~v~~~l~~~~V~~Ia~G~~h--t~aLt~~G~vy~WG~n 378 (657)
+..........++...+|.|+.|-...... ...+. .....|..++..... .+.-..||.|+.|=..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~----------~~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 364 (408)
T 4a11_B 297 FTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ----------ITMLK--GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPS 364 (408)
T ss_dssp CEECCSSSSCEEEEEETTEEEEEETTTCCE----------EEEEC--CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEC
T ss_pred eEEecCCCceEEEEecCCEEEEEECcCCcc----------eeeec--cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCC
Confidence 222223344556667889999997532111 11111 122447677665544 3344568999999654
Q ss_pred C
Q 006205 379 A 379 (657)
Q Consensus 379 ~ 379 (657)
.
T Consensus 365 ~ 365 (408)
T 4a11_B 365 L 365 (408)
T ss_dssp C
T ss_pred C
Confidence 4
No 108
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=36.20 E-value=25 Score=22.91 Aligned_cols=22 Identities=5% Similarity=0.015 Sum_probs=16.2
Q ss_pred chhhhhhhhHHHHHHHHHHHhh
Q 006205 632 VDDAKRTNDSLSQEVIKLRAQV 653 (657)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~ 653 (657)
+++|-..|..|..||.+||+=+
T Consensus 10 VEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 10 LEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHH
Confidence 4567777788888888888743
No 109
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=36.02 E-value=2.8e+02 Score=26.07 Aligned_cols=16 Identities=13% Similarity=0.441 Sum_probs=10.8
Q ss_pred EEEEEecCCcEEEEeC
Q 006205 310 LTVALTTSGHVYTMGS 325 (657)
Q Consensus 310 ~t~aLt~~G~Vy~wG~ 325 (657)
..++++.+|++|+-..
T Consensus 210 ~~i~~d~~G~l~v~~~ 225 (286)
T 1q7f_A 210 IGVGINSNGEILIADN 225 (286)
T ss_dssp EEEEECTTCCEEEEEC
T ss_pred cEEEECCCCCEEEEeC
Confidence 4567777777777654
No 110
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=35.27 E-value=3.1e+02 Score=26.36 Aligned_cols=68 Identities=10% Similarity=0.082 Sum_probs=39.5
Q ss_pred CCeEEEEecC--CeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeC--CceEEEEEcCCcEEE
Q 006205 76 LDVQNIACGG--RHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACG--EYHTCAVTLSGDLYT 151 (657)
Q Consensus 76 ~~I~~Ia~G~--~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G--~~hs~aLt~dG~Vy~ 151 (657)
..|..|+... ...+.-..+|.|+.|-...... ...+.. ....|..++.. ..+.+....||.|+.
T Consensus 33 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-----------~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 33 RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER-----------LGTLDG-HTGTIWSIDVDCFTKYCVTGSADYSIKL 100 (369)
T ss_dssp SCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE-----------EEEECC-CSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred ceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh-----------hhhhhh-cCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 3577777643 3445556789999996433211 111111 13356666654 345566678999999
Q ss_pred EcCC
Q 006205 152 WGDG 155 (657)
Q Consensus 152 wG~n 155 (657)
|-..
T Consensus 101 wd~~ 104 (369)
T 3zwl_B 101 WDVS 104 (369)
T ss_dssp EETT
T ss_pred EECC
Confidence 9544
No 111
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=35.02 E-value=3.5e+02 Score=26.90 Aligned_cols=99 Identities=14% Similarity=0.104 Sum_probs=52.7
Q ss_pred cCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeC--CceEEEEEcCCcEEEEcCCCCCCCc
Q 006205 84 GGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACG--EYHTCAVTLSGDLYTWGDGTYNFGL 161 (657)
Q Consensus 84 G~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G--~~hs~aLt~dG~Vy~wG~n~~~~Gq 161 (657)
.+...+.-..+|.|..|-.... .+..+.......|..++.. ....+.-..||.|+.|-... +.
T Consensus 108 ~~~~l~~~~~dg~i~iwd~~~~------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~---~~ 172 (420)
T 3vl1_A 108 QMRRFILGTTEGDIKVLDSNFN------------LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD---GS 172 (420)
T ss_dssp SSCEEEEEETTSCEEEECTTSC------------EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT---CC
T ss_pred CCCEEEEEECCCCEEEEeCCCc------------ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCC---Cc
Confidence 3445556678899999964321 1111111123467777654 33555566789999996441 11
Q ss_pred cCCCCCcceeeeeeecCCCCCceEEEEeeC--CceEEEEecCCcEEEEec
Q 006205 162 LGHGNEVSHWVPKRVNGPLEGIHVSSISCG--PWHTAVVTSAGQLFTFGD 209 (657)
Q Consensus 162 LG~~~~~~~~~P~~v~~~l~~~~I~~Ia~G--~~hs~~Lt~~G~vy~wG~ 209 (657)
....+.. ....|..++.. ....+.-..+|.|..|-.
T Consensus 173 ----------~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~ 210 (420)
T 3vl1_A 173 ----------NPRTLIG--HRATVTDIAIIDRGRNVLSASLDGTIRLWEC 210 (420)
T ss_dssp ----------CCEEEEC--CSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred ----------CceEEcC--CCCcEEEEEEcCCCCEEEEEcCCCcEEEeEC
Confidence 0111221 12245555543 334555567888988853
No 112
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=34.32 E-value=2.4e+02 Score=27.28 Aligned_cols=125 Identities=10% Similarity=0.054 Sum_probs=67.9
Q ss_pred EEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEe--CCceEEEEEcCCcEEEEcCCCCC
Q 006205 81 IACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVAC--GEYHTCAVTLSGDLYTWGDGTYN 158 (657)
Q Consensus 81 Ia~G~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~--G~~hs~aLt~dG~Vy~wG~n~~~ 158 (657)
++.+..+.+++|+.|++|..-...--. +.. .-......+....+..|+.+.. ...+.+++|++|.+.-.-...+.
T Consensus 40 ~~~t~~~ll~~T~~Gr~~~~~~~elp~-~r~--~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~ 116 (256)
T 1zvt_A 40 KGKSNQPVVFVDSTGRSYAIDPITLPS-ARG--QGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLV 116 (256)
T ss_dssp EEETTSCEEEEETTSEEEEECGGGSCC-SSS--CCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGC
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHCCC-cCC--CCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhc
Confidence 345566789999999999997643200 000 0000001223334667888766 34457888999988766443220
Q ss_pred CCccCCCCCcceeeeeeecCCCCCceEEEE--e-eCCceEEEEecCCcEEEEecCCCCccCC
Q 006205 159 FGLLGHGNEVSHWVPKRVNGPLEGIHVSSI--S-CGPWHTAVVTSAGQLFTFGDGTFGVLGH 217 (657)
Q Consensus 159 ~GqLG~~~~~~~~~P~~v~~~l~~~~I~~I--a-~G~~hs~~Lt~~G~vy~wG~n~~GqLG~ 217 (657)
.+ ... - ..+....++..++.+ . -+..+.+++|++|++.-|-.++.-.+|.
T Consensus 117 -~~---~r~--G---~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ei~~~gR 169 (256)
T 1zvt_A 117 -AR---NRA--G---KALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 169 (256)
T ss_dssp -CC---STT--C---EECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGGSCBCSS
T ss_pred -cc---CcC--c---eEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHHCCCcCc
Confidence 00 000 0 011111122233332 2 3677899999999999987665544443
No 113
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=34.00 E-value=3.6e+02 Score=26.68 Aligned_cols=71 Identities=7% Similarity=0.166 Sum_probs=37.3
Q ss_pred CeEEEEec--CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeC---CceEEEEEcCCcEEE
Q 006205 77 DVQNIACG--GRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACG---EYHTCAVTLSGDLYT 151 (657)
Q Consensus 77 ~I~~Ia~G--~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G---~~hs~aLt~dG~Vy~ 151 (657)
.|..++.. +...+.-..+|.|..|-...... + ......+.. ....|..++.. ....+.-..||.|+.
T Consensus 69 ~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~-~------~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~dg~v~i 140 (416)
T 2pm9_A 69 KFNDLDWSHNNKIIAGALDNGSLELYSTNEANN-A------INSMARFSN-HSSSVKTVKFNAKQDNVLASGGNNGEIFI 140 (416)
T ss_dssp CEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-C------CCEEEECCC-SSSCCCEEEECSSSTTBEEEECSSSCEEB
T ss_pred ceEEEEECCCCCeEEEEccCCeEEEeecccccc-c------ccchhhccC-CccceEEEEEcCCCCCEEEEEcCCCeEEE
Confidence 46666653 33444556789999996543110 0 001111111 12245555543 445555667899999
Q ss_pred EcCC
Q 006205 152 WGDG 155 (657)
Q Consensus 152 wG~n 155 (657)
|-..
T Consensus 141 wd~~ 144 (416)
T 2pm9_A 141 WDMN 144 (416)
T ss_dssp CBTT
T ss_pred EECC
Confidence 9655
No 114
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=32.90 E-value=4.1e+02 Score=27.00 Aligned_cols=237 Identities=6% Similarity=0.002 Sum_probs=121.6
Q ss_pred eEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccC--CCCcEEEEEeCCc-eEEEEEcCCcEEEEcC
Q 006205 78 VQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDAL--SNMNIELVACGEY-HTCAVTLSGDLYTWGD 154 (657)
Q Consensus 78 I~~Ia~G~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l--~~~~I~~Va~G~~-hs~aLt~dG~Vy~wG~ 154 (657)
+..++......+.-..||.|..|-.... ..+..+ ....|..++.... ..+.-..||.|..|-.
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~--------------~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~ 190 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINK--------------KFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDI 190 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTT--------------EEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEET
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCC--------------cEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEEC
Confidence 4566666777777789999999975332 111111 2336777765433 5566678999999954
Q ss_pred CCCCCCccCCCCCcceeeeeeecCCCCCceEEEEee----CCceEEEEecCCcEEEEecCCCCccCCCCCc---------
Q 006205 155 GTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISC----GPWHTAVVTSAGQLFTFGDGTFGVLGHGDRK--------- 221 (657)
Q Consensus 155 n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~----G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~--------- 221 (657)
.. +. ....+... ...|..++. .....+.-+.+|.|+.|-.............
T Consensus 191 ~~---~~----------~~~~~~~h--~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 255 (464)
T 3v7d_B 191 KK---GC----------CTHVFEGH--NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT 255 (464)
T ss_dssp TT---TE----------EEEEECCC--SSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESC
T ss_pred CC---Cc----------EEEEECCC--CCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeec
Confidence 41 11 11122221 224544443 2355666678999999975433221110000
Q ss_pred ccccceeeeccC--CCeEEEEEeCCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeecCCC
Q 006205 222 SVSIPREVESLK--GLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEP 299 (657)
Q Consensus 222 ~~~~P~~v~~l~--~~~I~~Ia~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~~~ 299 (657)
....+..+..+. ...+..++......+... .+|.|+.|-..... +.........
T Consensus 256 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~------------~d~~i~vwd~~~~~------------~~~~~~~~~~ 311 (464)
T 3v7d_B 256 PEENPYFVGVLRGHMASVRTVSGHGNIVVSGS------------YDNTLIVWDVAQMK------------CLYILSGHTD 311 (464)
T ss_dssp GGGCTTEEEEECCCSSCEEEEEEETTEEEEEE------------TTSCEEEEETTTTE------------EEEEECCCSS
T ss_pred cCCCeEEEEEccCccceEEEEcCCCCEEEEEe------------CCCeEEEEECCCCc------------EEEEecCCCC
Confidence 000011111111 123555544333333333 68899999643210 0111111123
Q ss_pred CeEEEEcc--CcEEEEEecCCcEEEEeCCCCCCCCCCCCCCCcceeeccccCCCCEEEEEEccccccccccCCeEEEEec
Q 006205 300 NFCRVACG--HSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGK 377 (657)
Q Consensus 300 ~i~~I~~G--~~~t~aLt~~G~Vy~wG~n~~GqLG~~~~~~~~p~~v~~~l~~~~V~~Ia~G~~ht~aLt~~G~vy~WG~ 377 (657)
.|..+... ....+.-..||.|+.|-.... .....+. .....|..++....+.+.-..||.|..|=.
T Consensus 312 ~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~----------~~~~~~~--~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~ 379 (464)
T 3v7d_B 312 RIYSTIYDHERKRCISASMDTTIRIWDLENG----------ELMYTLQ--GHTALVGLLRLSDKFLVSAAADGSIRGWDA 379 (464)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEETTTT----------EEEEEEC--CCSSCEEEEEECSSEEEEEETTSEEEEEET
T ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----------cEEEEEe--CCCCcEEEEEEcCCEEEEEeCCCcEEEEEC
Confidence 45555433 335556677888998864321 1111111 123457777777777777788999999965
Q ss_pred CC
Q 006205 378 GA 379 (657)
Q Consensus 378 n~ 379 (657)
..
T Consensus 380 ~~ 381 (464)
T 3v7d_B 380 ND 381 (464)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 115
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=30.00 E-value=4.1e+02 Score=26.09 Aligned_cols=121 Identities=9% Similarity=0.050 Sum_probs=63.8
Q ss_pred CCeEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeC------C---ceEEEEEcC
Q 006205 76 LDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACG------E---YHTCAVTLS 146 (657)
Q Consensus 76 ~~I~~Ia~G~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G------~---~hs~aLt~d 146 (657)
..|..|+......+.-..||.|+.|-...... .........+. .....|..++.. . ...+....+
T Consensus 17 ~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~-----~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~d 90 (397)
T 1sq9_A 17 ADIFSVSACNSFTVSCSGDGYLKVWDNKLLDN-----ENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTSFS 90 (397)
T ss_dssp SCEEEEEECSSEEEEEETTSEEEEEESBCCTT-----CCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred cCeEEEEecCCeEEEEcCCCEEEEEECCCccc-----ccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEEEcCC
Confidence 36888887777777778899999998654221 00011112222 123356666544 2 345555678
Q ss_pred CcEEEEcCCCCCCCccCCCCCcceeeeeeecCCCC---CceEEEEeeC------Cce-EEEEecCCcEEEEecC
Q 006205 147 GDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLE---GIHVSSISCG------PWH-TAVVTSAGQLFTFGDG 210 (657)
Q Consensus 147 G~Vy~wG~n~~~~GqLG~~~~~~~~~P~~v~~~l~---~~~I~~Ia~G------~~h-s~~Lt~~G~vy~wG~n 210 (657)
|.|+.|-... +.. ........+..... ...|..++.. ..+ .+....+|.|+.|-..
T Consensus 91 g~i~iw~~~~---~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 156 (397)
T 1sq9_A 91 GDLLFYRITR---EDE-----TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFH 156 (397)
T ss_dssp SCEEEEEEEE---CTT-----TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEE
T ss_pred CCEEEEEccC---Ccc-----cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCC
Confidence 9999995441 110 00111122222110 2346555544 344 5555788999999643
No 116
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=29.70 E-value=38 Score=22.00 Aligned_cols=22 Identities=9% Similarity=0.129 Sum_probs=16.1
Q ss_pred chhhhhhhhHHHHHHHHHHHhh
Q 006205 632 VDDAKRTNDSLSQEVIKLRAQV 653 (657)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~ 653 (657)
+++|-..|..|.+||.+|++-+
T Consensus 9 VEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 9 IEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHh
Confidence 4566677778888888888644
No 117
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=29.39 E-value=43 Score=22.20 Aligned_cols=22 Identities=23% Similarity=0.284 Sum_probs=16.2
Q ss_pred chhhhhhhhHHHHHHHHHHHhh
Q 006205 632 VDDAKRTNDSLSQEVIKLRAQV 653 (657)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~ 653 (657)
+++|-..|..|..||.+||+-+
T Consensus 10 VEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 10 VEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHh
Confidence 4666777778888888888744
No 118
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=29.33 E-value=5.2e+02 Score=27.12 Aligned_cols=221 Identities=9% Similarity=0.023 Sum_probs=108.4
Q ss_pred CeEEEEecCC---eEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCC---cEEEEEeCCc---eEEEEEcCC
Q 006205 77 DVQNIACGGR---HAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNM---NIELVACGEY---HTCAVTLSG 147 (657)
Q Consensus 77 ~I~~Ia~G~~---h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~---~I~~Va~G~~---hs~aLt~dG 147 (657)
.|..++.... ..+....+|.|+.|-..... ....+.. ... .|..++.... ..+....+|
T Consensus 162 ~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~-----------~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg 229 (615)
T 1pgu_A 162 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK-----------FSASDRT-HHKQGSFVRDVEFSPDSGEFVITVGSDR 229 (615)
T ss_dssp CEEEEEECSSSSCEEEEEETTTEEEEEETTTBE-----------EEEEECS-SSCTTCCEEEEEECSTTCCEEEEEETTC
T ss_pred cEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc-----------eeeeecc-cCCCCceEEEEEECCCCCCEEEEEeCCC
Confidence 4666665443 45666788999999632211 0111111 122 5777766533 555567899
Q ss_pred cEEEEcCCCCCCCccCCCCCcceeeeeeecCC--CCCceEEEEee-CCceEEEEecCCcEEEEecCCCCccCCCCCcccc
Q 006205 148 DLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGP--LEGIHVSSISC-GPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVS 224 (657)
Q Consensus 148 ~Vy~wG~n~~~~GqLG~~~~~~~~~P~~v~~~--l~~~~I~~Ia~-G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~ 224 (657)
.|+.|-... +. ....+... .....|..++. ...+.+....+|.|..|-.... ++
T Consensus 230 ~i~vwd~~~---~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~-~~--------- 286 (615)
T 1pgu_A 230 KISCFDGKS---GE----------FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS-KC--------- 286 (615)
T ss_dssp CEEEEETTT---CC----------EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT-EE---------
T ss_pred eEEEEECCC---CC----------EeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCC-cE---------
Confidence 999995431 11 01111000 11234555554 4455666677899999964321 10
Q ss_pred cceeeecc---CCCeEEEEEe-CCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeecCCCC
Q 006205 225 IPREVESL---KGLRTVRAAC-GVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPN 300 (657)
Q Consensus 225 ~P~~v~~l---~~~~I~~Ia~-G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~~~~ 300 (657)
...+... ....+..+.. ...+.++.. .+|.++.|-... ..+..........
T Consensus 287 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------~~g~i~~~d~~~------------~~~~~~~~~~~~~ 341 (615)
T 1pgu_A 287 -VQKWTLDKQQLGNQQVGVVATGNGRIISLS------------LDGTLNFYELGH------------DEVLKTISGHNKG 341 (615)
T ss_dssp -EEEEECCTTCGGGCEEEEEEEETTEEEEEE------------TTSCEEEEETTE------------EEEEEEECCCSSC
T ss_pred -EEEEcCCCCcccCceeEEEeCCCCeEEEEE------------CCCCEEEEECCC------------CcEEEEEeCCCCC
Confidence 0011100 0012333322 222222222 688999985432 1111111122346
Q ss_pred eEEEEccCcEEEEEecCCcEEEEeCCCCCCCCCCCCCCCcceeeccccCCCCEEEEEEc-cccccccccCCeEEEEe
Q 006205 301 FCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACG-SYHVAVLTSKTEVYTWG 376 (657)
Q Consensus 301 i~~I~~G~~~t~aLt~~G~Vy~wG~n~~GqLG~~~~~~~~p~~v~~~l~~~~V~~Ia~G-~~ht~aLt~~G~vy~WG 376 (657)
|..++. .. .+.-..+|.|+.|-.. .+. ......|..++.. ....+.-..+|.+..|-
T Consensus 342 v~~~~~-~~-l~~~~~dg~i~~w~~~----------------~~~-~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~ 399 (615)
T 1pgu_A 342 ITALTV-NP-LISGSYDGRIMEWSSS----------------SMH-QDHSNLIVSLDNSKAQEYSSISWDDTLKVNG 399 (615)
T ss_dssp EEEEET-TT-TEEEETTSCEEETTTT----------------EEE-CCCCSCEEEEECCSTTCCEEEETTTEEEETT
T ss_pred EEEEEe-cC-cEEECCCCeEEEEEch----------------hhc-CcccCceEEEEECCCcEEEEEeCCCCEEEEE
Confidence 777777 66 5566788999998643 111 1222345555553 22333444677777774
No 119
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=29.32 E-value=4.5e+02 Score=26.44 Aligned_cols=109 Identities=14% Similarity=0.115 Sum_probs=56.7
Q ss_pred CeEEEEec--CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeCCceEEEEEcCCcEEEEcC
Q 006205 77 DVQNIACG--GRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGD 154 (657)
Q Consensus 77 ~I~~Ia~G--~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~ 154 (657)
.|..|+.. +.+.+.-..||.|..|-......+ ..+. .....+..++......+.-..++.++.|-.
T Consensus 149 ~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~-----------~~~~-~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~ 216 (420)
T 4gga_A 149 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL-----------RNMT-SHSARVGSLSWNSYILSSGSRSGHIHHHDV 216 (420)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-----------EEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEET
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEE-----------EEEe-CCCCceEEEeeCCCEEEEEeCCCceeEeee
Confidence 46677654 345555678899999975432111 1111 112356666666666666677888888854
Q ss_pred CCCCCCccCCCCCcceeeeeeecCCCCCceEEEEeeCCceEEEEecCCcEEEEec
Q 006205 155 GTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGD 209 (657)
Q Consensus 155 n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~G~~hs~~Lt~~G~vy~wG~ 209 (657)
... . . .-..+.................+.+....||.++.|-.
T Consensus 217 ~~~--~---------~-~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~ 259 (420)
T 4gga_A 217 RVA--E---------H-HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 259 (420)
T ss_dssp TSS--S---------C-EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred ccc--c---------e-eeEEecccccceeeeeecCCCCeeeeeeccccceEEee
Confidence 311 0 0 00111111112222233333455566677888888853
No 120
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=29.25 E-value=6.3e+02 Score=28.10 Aligned_cols=109 Identities=17% Similarity=0.243 Sum_probs=60.0
Q ss_pred CeEEEEec--CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccC--CCCcEEEEEeC----CceEEEEEcCCc
Q 006205 77 DVQNIACG--GRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDAL--SNMNIELVACG----EYHTCAVTLSGD 148 (657)
Q Consensus 77 ~I~~Ia~G--~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l--~~~~I~~Va~G----~~hs~aLt~dG~ 148 (657)
.|..++.. +...+.-..||.|..|-.... ....+..+ ....|..|+.. ....+.-..||.
T Consensus 11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~------------~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~ 78 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGE------------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78 (753)
T ss_dssp CEEEECCCSSSCCEEEEETTTEEEEEEEETT------------EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSC
T ss_pred eeEEEEECCCCCeEEEEECCCcEEEEecCCC------------CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCe
Confidence 35555543 334455567899999953310 11122222 13367777764 455666778999
Q ss_pred EEEEcCCCCCCCccCCCCCcceeeeeeecCCCCCceEEEEeeC----CceEEEEecCCcEEEEecC
Q 006205 149 LYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCG----PWHTAVVTSAGQLFTFGDG 210 (657)
Q Consensus 149 Vy~wG~n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~G----~~hs~~Lt~~G~vy~wG~n 210 (657)
|+.|-... + ...+..... .....|..++.. ....+..+.+|.|+.|-..
T Consensus 79 I~vwd~~~---~---------~~~~~~~~~-~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~ 131 (753)
T 3jro_A 79 VLIWKEEN---G---------RWSQIAVHA-VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 131 (753)
T ss_dssp EEEEEEET---T---------EEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred EEEEECCC---C---------ccccccccc-CCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEee
Confidence 99995441 1 111111111 123356666655 3456667788999999643
No 121
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=27.96 E-value=4.5e+02 Score=25.95 Aligned_cols=186 Identities=12% Similarity=0.044 Sum_probs=91.1
Q ss_pred CeEEEEec--CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccC--CCCcEEEEEeC---CceEEEEEcCCcE
Q 006205 77 DVQNIACG--GRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDAL--SNMNIELVACG---EYHTCAVTLSGDL 149 (657)
Q Consensus 77 ~I~~Ia~G--~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l--~~~~I~~Va~G---~~hs~aLt~dG~V 149 (657)
.|..|+.. +...+.-..+|.|..|-.+.. ..+..+ ....|..|+.. ....+....||.|
T Consensus 141 ~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~--------------~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v 206 (357)
T 4g56_B 141 IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK--------------AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRI 206 (357)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTT--------------EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCE
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEECCCC--------------cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCce
Confidence 46666654 334455567899999964331 122222 12357777653 3345566778999
Q ss_pred EEEcCCCCCCCccCCCCCcceeeeeeecCCCCCceEEEEeeC---CceEEEEecCCcEEEEecCCCCccCCCCCcccccc
Q 006205 150 YTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCG---PWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIP 226 (657)
Q Consensus 150 y~wG~n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~G---~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~P 226 (657)
..|-... ++. ...+........+..|+.. ....+.-+.+|.|+.|-.... + ..
T Consensus 207 ~~wd~~~---~~~----------~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~----------~~ 262 (357)
T 4g56_B 207 LLWDTRK---PKP----------ATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-D----------SA 262 (357)
T ss_dssp EECCTTS---SSC----------BCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-G----------GC
T ss_pred EEEECCC---Cce----------eeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC-c----------Ee
Confidence 9994331 110 0011111122346666653 222333467889998853211 0 11
Q ss_pred eeeeccCCCeEEEEEeCCCe--eEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeecC-CCCeEE
Q 006205 227 REVESLKGLRTVRAACGVWH--TAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALV-EPNFCR 303 (657)
Q Consensus 227 ~~v~~l~~~~I~~Ia~G~~h--s~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~-~~~i~~ 303 (657)
..+.. ....|..++..... .++.. ..++.|+.|-... ++ .+..+. ...|..
T Consensus 263 ~~~~~-~~~~v~~l~~sp~~~~~lasg-----------s~D~~i~iwd~~~-~~-------------~~~~~~H~~~V~~ 316 (357)
T 4g56_B 263 QTSAV-HSQNITGLAYSYHSSPFLASI-----------SEDCTVAVLDADF-SE-------------VFRDLSHRDFVTG 316 (357)
T ss_dssp EEECC-CSSCEEEEEECSSSSCCEEEE-----------ETTSCEEEECTTS-CE-------------EEEECCCSSCEEE
T ss_pred EEEec-cceeEEEEEEcCCCCCEEEEE-----------eCCCEEEEEECCC-Cc-------------EeEECCCCCCEEE
Confidence 11111 12356666654322 22221 1589999994321 11 111111 235666
Q ss_pred EEcc---CcEEEEEecCCcEEEEeCC
Q 006205 304 VACG---HSLTVALTTSGHVYTMGSP 326 (657)
Q Consensus 304 I~~G---~~~t~aLt~~G~Vy~wG~n 326 (657)
|+.. ....+.-..||.|+.|=-.
T Consensus 317 vafsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 317 VAWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp EEECSSSTTEEEEEETTSCEEEEECC
T ss_pred EEEeCCCCCEEEEEcCCCeEEEEECC
Confidence 6542 2333344678999999643
No 122
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=26.97 E-value=33 Score=24.82 Aligned_cols=44 Identities=16% Similarity=0.338 Sum_probs=30.1
Q ss_pred cCcccCCCCCCCCCcccccccccccccceeeccCCCccccccccCCCCCCCeeeCcchHHhh
Q 006205 427 VDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKL 488 (657)
Q Consensus 427 ~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~ 488 (657)
.+...|..|...|... .-..||..||..|... ..+.|..|...+
T Consensus 4 ~~~~~C~IC~~~~~~p-----~~l~CgH~fC~~Ci~~-------------~~~~CP~Cr~~~ 47 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP-----KLLPCLHTLCSGCLEA-------------SGMQCPICQAPW 47 (56)
T ss_dssp CCCSSCSSSCSSCBCC-----SCSTTSCCSBTTTCSS-------------SSSSCSSCCSSS
T ss_pred ccCCCceEeCCccCCe-----EEcCCCCcccHHHHcc-------------CCCCCCcCCcEe
Confidence 4556799998887632 2346999999999766 134577776554
No 123
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=26.57 E-value=37 Score=27.13 Aligned_cols=20 Identities=40% Similarity=0.559 Sum_probs=14.6
Q ss_pred chhhhhhhhHHHHHHHHHHH
Q 006205 632 VDDAKRTNDSLSQEVIKLRA 651 (657)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~ 651 (657)
+++||..|..|.+|+..+++
T Consensus 29 ieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 29 IEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 57788888887777766444
No 124
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=26.42 E-value=4.3e+02 Score=25.26 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=18.2
Q ss_pred CCCCcEEEEEeC-CceEEEEEcCCcE-EEEc
Q 006205 125 LSNMNIELVACG-EYHTCAVTLSGDL-YTWG 153 (657)
Q Consensus 125 l~~~~I~~Va~G-~~hs~aLt~dG~V-y~wG 153 (657)
+.+-++.-..++ ....++++.+|++ +.|+
T Consensus 85 ~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~ 115 (276)
T 3no2_A 85 LPDGNALVAWCGHPSTILEVNMKGEVLSKTE 115 (276)
T ss_dssp CTTSCEEEEEESTTEEEEEECTTSCEEEEEE
T ss_pred CCCCCEEEEecCCCCEEEEEeCCCCEEEEEe
Confidence 344466655666 5666777888874 5554
No 125
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=26.07 E-value=16 Score=28.68 Aligned_cols=54 Identities=15% Similarity=0.319 Sum_probs=34.5
Q ss_pred cCcccCCCCCCCCCcccccccccccccceeeccCCCccccccccCCCCCCCeeeCcchHHhhh
Q 006205 427 VDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLR 489 (657)
Q Consensus 427 ~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~ 489 (657)
.+...|..|...|..-. -..||..||..|-........ .......|..|...+.
T Consensus 17 ~~~~~C~IC~~~~~~p~-----~~~CgH~fC~~Ci~~~~~~~~----~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPV-----SADCNHSFCRACITLNYESNR----NTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CTTTSCTTTCSCCSSCE-----ECTTSCCBCHHHHHHHHHHSB----CTTSCBCCTTTCCCCC
T ss_pred ccCCCCcCCChhhCcce-----eCCCCCHHHHHHHHHHHHhcc----CCCCCCCCCCCCCcCC
Confidence 34567999988875221 246999999999765433321 1233577888876654
No 126
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=26.00 E-value=4.4e+02 Score=25.21 Aligned_cols=16 Identities=6% Similarity=0.023 Sum_probs=9.1
Q ss_pred ceEEEEEcCCc-EEEEc
Q 006205 138 YHTCAVTLSGD-LYTWG 153 (657)
Q Consensus 138 ~hs~aLt~dG~-Vy~wG 153 (657)
-+.++++.+|+ +|.-+
T Consensus 91 ~~~~~~s~dg~~l~v~~ 107 (353)
T 3vgz_A 91 PFGATINNTTQTLWFGN 107 (353)
T ss_dssp CCSEEEETTTTEEEEEE
T ss_pred cceEEECCCCCEEEEEe
Confidence 35566666666 55443
No 127
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=25.82 E-value=5.6e+02 Score=26.37 Aligned_cols=113 Identities=12% Similarity=0.035 Sum_probs=61.9
Q ss_pred CccccCCCCcEEEEcCCCCCCccCCCCCCCccccc-cccccCCceeecccCCCCeEEEEecCCeEEEEEcCCcEEEEeCC
Q 006205 25 GHDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFG-VKMDSSLPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEE 103 (657)
Q Consensus 25 ~~~~l~~~G~Vy~WG~n~~~G~LG~g~~~~~~~~~-~~~~~~~P~~i~~~~~~~I~~Ia~G~~h~~~lt~~G~Vy~wG~n 103 (657)
...++.+.+.+++-|.+. .-.+..-. ....... ...+ ..|..+.... . |.+|++ ....+++..+|.|..|--.
T Consensus 41 nlLais~~~gll~a~~~~-~l~v~~~~-~l~~~~~~~~~~-~~~~~~~~lp-~-V~~l~f-d~~~L~v~~~~~l~v~dv~ 114 (388)
T 1xip_A 41 QNLDISNSKSLFVAASGS-KAVVGELQ-LLRDHITSDSTP-LTFKWEKEIP-D-VIFVCF-HGDQVLVSTRNALYSLDLE 114 (388)
T ss_dssp BCEEEETTTTEEEEEETT-EEEEEEHH-HHHHHHHSSSCC-CCCSEEEECT-T-EEEEEE-ETTEEEEEESSEEEEEESS
T ss_pred cEEEEcCCCCEEEEeCCC-EEEEEEhh-Hhhhhhcccccc-ccceEEeeCC-C-eeEEEE-CCCEEEEEcCCcEEEEEch
Confidence 335677777777777665 33332111 0000000 0011 2342222222 2 999999 7777777799999999754
Q ss_pred CCCCcCCCCCCCcccceEeccCCCCcEEEEEeCCceEEEEEcCCcEEEEcCC
Q 006205 104 SGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDG 155 (657)
Q Consensus 104 ~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n 155 (657)
...+. ..+..+ ...+.+|.+-....++++.||.|+.|--.
T Consensus 115 sl~~~-----------~~~~~~-~~~v~~i~~~~p~~av~~~dG~L~v~dl~ 154 (388)
T 1xip_A 115 ELSEF-----------RTVTSF-EKPVFQLKNVNNTLVILNSVNDLSALDLR 154 (388)
T ss_dssp STTCE-----------EEEEEC-SSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred hhhcc-----------Ccccee-ecceeeEEecCCCEEEEECCCCEEEEEcc
Confidence 43211 111111 12456666666568888999999999543
No 128
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=25.73 E-value=5e+02 Score=25.73 Aligned_cols=261 Identities=10% Similarity=0.073 Sum_probs=127.3
Q ss_pred CeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEE--EEeCCceEEEEEcCCcEEEEcCCCCCCCccC
Q 006205 86 RHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIEL--VACGEYHTCAVTLSGDLYTWGDGTYNFGLLG 163 (657)
Q Consensus 86 ~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~--Va~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG 163 (657)
...+++|++|.|--.-...+.....+.. -..-+..-++..+.. ++.+..+.+++|+.|.+|..-.... -..|
T Consensus 9 ~~~v~~T~~G~iKr~~~~~~~~~~~~~~----g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~i--p~~~ 82 (312)
T 1suu_A 9 NIVVMLTKKGFLKRLSQNEYKLQGTGGK----GLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEI--KDSS 82 (312)
T ss_dssp EEEEEEETTCBEEEEEGGGSCBCCSSCC----CEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGS--CC--
T ss_pred CEEEEEeCCCEEEEeEHHHhhccccCCC----CceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHC--CCCC
Confidence 4467899999887654333322111100 011111112334444 4567788999999999998854311 1111
Q ss_pred CCCCcceeeeeeecCCCCCceEEEEeeC-----CceEEEEecCCcEEEEecCCCCcc-CCCCCcccccceeeeccCCCeE
Q 006205 164 HGNEVSHWVPKRVNGPLEGIHVSSISCG-----PWHTAVVTSAGQLFTFGDGTFGVL-GHGDRKSVSIPREVESLKGLRT 237 (657)
Q Consensus 164 ~~~~~~~~~P~~v~~~l~~~~I~~Ia~G-----~~hs~~Lt~~G~vy~wG~n~~GqL-G~g~~~~~~~P~~v~~l~~~~I 237 (657)
.... -......+. ..++++|+.+... ..+.+++|++|.++-.-...+-.. +.| . ..+..-.+..+
T Consensus 83 r~~~-G~~i~~~l~-l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G--~-----~~i~L~~~d~l 153 (312)
T 1suu_A 83 RASK-GQNISELIN-LGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRG--V-----IVIKLNDKDFV 153 (312)
T ss_dssp ------CBGGGTSC-CCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----C--E-----ECBCCCTTCCE
T ss_pred ccCC-CcChhhccC-CCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCc--E-----EEEecCCCCEE
Confidence 1000 000111122 2345677777654 456899999999998875544111 011 0 00111123344
Q ss_pred EEEE--eCCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeecCCCCeEEEEc--cCcEEEE
Q 006205 238 VRAA--CGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVAC--GHSLTVA 313 (657)
Q Consensus 238 ~~Ia--~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~~~~i~~I~~--G~~~t~a 313 (657)
+.+. .+..+-++++ ++|.++.+-..+.-..|....... .+....+..++.+.. ...+.++
T Consensus 154 v~~~~~~~~~~i~l~T------------~~G~~~r~~~~ev~~~gR~~~Gv~----~i~L~~~d~vv~~~~v~~~~~l~~ 217 (312)
T 1suu_A 154 TSAEIVFKDEKVICLS------------KKGSAFIFNSRDVRLTNRGTQGVC----GMKLKEGDLFVKVLSVKENPYLLI 217 (312)
T ss_dssp EEEEEECTTCEEEEEE------------TTSEEEEEEGGGSCBCCTTBCCEE----CCCCCTTCCEEEEEECTTCSEEEE
T ss_pred EEEEEeCCCCEEEEEe------------CCCcEEEEEHHHccccCCCCCCeE----eEEeCCCCEEEEEEEECCCCeEEE
Confidence 4433 2444555555 688888887655444433211110 111112344554432 3456788
Q ss_pred EecCCcEEEEeCCCCCCCCCCCCCCCcceeeccccCCCCEEEE--EEccccccccccCCeEEEEecCC
Q 006205 314 LTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEI--ACGSYHVAVLTSKTEVYTWGKGA 379 (657)
Q Consensus 314 Lt~~G~Vy~wG~n~~GqLG~~~~~~~~p~~v~~~l~~~~V~~I--a~G~~ht~aLt~~G~vy~WG~n~ 379 (657)
++++|.+..+--.++-..+.+........... .....++.+ .......+++|+.|.+.-.-.++
T Consensus 218 vt~~G~~kr~~~~e~~~~~R~~kGv~~~~~~k--~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~~~ 283 (312)
T 1suu_A 218 VSENGYGKRLNMSKISELKRGATGYTSYKKSD--KKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGK 283 (312)
T ss_dssp EETTSEEEEEEGGGSCBCCTTCCCEECSCTTC--TTTCSEEEEEEECTTCEEEEEETTCEEEEEEGGG
T ss_pred EECCCceEEEEHHHhcccCCCCCCEEeeEccC--CCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEccc
Confidence 89999888777666655544332222221110 111234332 22455567778888776654443
No 129
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=25.69 E-value=41 Score=23.77 Aligned_cols=36 Identities=19% Similarity=0.426 Sum_probs=24.1
Q ss_pred CcccCCCCCCCCCcccccccccccccceeeccCCCcc
Q 006205 428 DQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKK 464 (657)
Q Consensus 428 d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~ 464 (657)
+...|..|...|.. .........||-.||..|...-
T Consensus 4 ~~~~C~IC~~~~~~-~~~~~~~~~CgH~fc~~Ci~~~ 39 (55)
T 2ecm_A 4 GSSGCPICLEDIHT-SRVVAHVLPCGHLLHRTCYEEM 39 (55)
T ss_dssp CCCSCTTTCCCCCT-TTSCEEECTTSCEEETTHHHHH
T ss_pred CCCcCcccChhhcC-CCcCeEecCCCCcccHHHHHHH
Confidence 45678999888752 1122334569999999997654
No 130
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=25.67 E-value=49 Score=21.67 Aligned_cols=21 Identities=5% Similarity=0.306 Sum_probs=15.8
Q ss_pred chhhhhhhhHHHHHHHHHHHh
Q 006205 632 VDDAKRTNDSLSQEVIKLRAQ 652 (657)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~ 652 (657)
+++|-..|..|..||.+||+=
T Consensus 10 vEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 10 LEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHH
Confidence 456667778888888888863
No 131
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=24.96 E-value=24 Score=27.45 Aligned_cols=26 Identities=19% Similarity=0.617 Sum_probs=16.1
Q ss_pred cccCCCCCCCCCcccccccccccccc
Q 006205 429 QSMCSGCRLPFNNFKRKRHNCYNCGL 454 (657)
Q Consensus 429 ~~~C~~C~~~F~~f~rkrh~C~~cG~ 454 (657)
...|..|+..|..-....-+|+.||.
T Consensus 28 ~Y~C~~CG~~~e~~~~d~irCp~CG~ 53 (70)
T 1twf_L 28 KYICAECSSKLSLSRTDAVRCKDCGH 53 (70)
T ss_dssp CEECSSSCCEECCCTTSTTCCSSSCC
T ss_pred EEECCCCCCcceeCCCCCccCCCCCc
Confidence 35688899888743233345666665
No 132
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=24.88 E-value=39 Score=23.94 Aligned_cols=37 Identities=19% Similarity=0.335 Sum_probs=23.9
Q ss_pred cCcccCCCCCCCCCcccccccccccccceeeccCCCcc
Q 006205 427 VDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKK 464 (657)
Q Consensus 427 ~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~ 464 (657)
.+...|..|...|.. ...-.....||..||..|-..-
T Consensus 3 ~~~~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~Ci~~w 39 (55)
T 1iym_A 3 DDGVECAVCLAELED-GEEARFLPRCGHGFHAECVDMW 39 (55)
T ss_dssp CCSCCCTTTCCCCCT-TSCCEECSSSCCEECTTHHHHT
T ss_pred CCCCcCccCCccccC-CCceEECCCCCCcccHHHHHHH
Confidence 355679999988862 1111112259999999997543
No 133
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=24.56 E-value=1.7e+02 Score=30.39 Aligned_cols=73 Identities=12% Similarity=0.054 Sum_probs=45.5
Q ss_pred cceEeccCCCCcEEEEEeCCceEEEEEcCCcEEEEcCCCCCCCccCCCCCcceeeeeeecCCCCCceEEEEeeCCceEEE
Q 006205 118 HPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAV 197 (657)
Q Consensus 118 ~P~~v~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~G~~hs~~ 197 (657)
.|.....+.. |.+|++ ....+++..+|.|..|--... ..+. ..+ .+ ...+.++.+-....++
T Consensus 80 ~~~~~~~lp~--V~~l~f-d~~~L~v~~~~~l~v~dv~sl-----~~~~----~~~-~~-----~~~v~~i~~~~p~~av 141 (388)
T 1xip_A 80 TFKWEKEIPD--VIFVCF-HGDQVLVSTRNALYSLDLEEL-----SEFR----TVT-SF-----EKPVFQLKNVNNTLVI 141 (388)
T ss_dssp CCSEEEECTT--EEEEEE-ETTEEEEEESSEEEEEESSST-----TCEE----EEE-EC-----SSCEEEEEECSSEEEE
T ss_pred cceEEeeCCC--eeEEEE-CCCEEEEEcCCcEEEEEchhh-----hccC----ccc-ee-----ecceeeEEecCCCEEE
Confidence 3433333444 999999 777888889999999954421 1111 011 11 1235565555555888
Q ss_pred EecCCcEEEEe
Q 006205 198 VTSAGQLFTFG 208 (657)
Q Consensus 198 Lt~~G~vy~wG 208 (657)
++.+|.|+.|-
T Consensus 142 ~~~dG~L~v~d 152 (388)
T 1xip_A 142 LNSVNDLSALD 152 (388)
T ss_dssp EETTSEEEEEE
T ss_pred EECCCCEEEEE
Confidence 89999999995
No 134
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=24.40 E-value=4.8e+02 Score=25.09 Aligned_cols=241 Identities=12% Similarity=0.105 Sum_probs=117.0
Q ss_pred CeEEEEecC--CeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccC--CCCcEEEEEeC----CceEEEEEcCCc
Q 006205 77 DVQNIACGG--RHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDAL--SNMNIELVACG----EYHTCAVTLSGD 148 (657)
Q Consensus 77 ~I~~Ia~G~--~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l--~~~~I~~Va~G----~~hs~aLt~dG~ 148 (657)
.|..|+... ...+.-..||.|+.|-.... ....+..+ ....|..++.. ....+....||.
T Consensus 13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGE------------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEETT------------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEecCCC------------cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 466666543 34444457899999964310 11222222 23467777764 456666778999
Q ss_pred EEEEcCCCCCCCccCCCCCcceeeeeeecCCCCCceEEEEeeCC----ceEEEEecCCcEEEEecCCCCccCCCCCcccc
Q 006205 149 LYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGP----WHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVS 224 (657)
Q Consensus 149 Vy~wG~n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~G~----~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~ 224 (657)
|+.|-... + ...+..... .....|..++... ...+....+|.|+.|-...... .
T Consensus 81 v~iwd~~~---~---------~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---------~ 138 (379)
T 3jrp_A 81 VLIWKEEN---G---------RWSQIAVHA-VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT---------T 138 (379)
T ss_dssp EEEEEEET---T---------EEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC---------C
T ss_pred EEEEEcCC---C---------ceeEeeeec-CCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc---------e
Confidence 99995441 1 111111111 1233566666553 3566667889999996432211 1
Q ss_pred cceeeeccCCCeEEEEEeCC--------------CeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCCceeec
Q 006205 225 IPREVESLKGLRTVRAACGV--------------WHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVP 290 (657)
Q Consensus 225 ~P~~v~~l~~~~I~~Ia~G~--------------~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P 290 (657)
.+..+. .....|..++... ...++... .+|.|+.|-.... .....+
T Consensus 139 ~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~dg~i~i~d~~~~--------~~~~~~ 198 (379)
T 3jrp_A 139 SPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-----------ADNLVKIWKYNSD--------AQTYVL 198 (379)
T ss_dssp CEEEEE-CCTTCEEEEEECCCC----------CTTCEEEEEE-----------TTSCEEEEEEETT--------TTEEEE
T ss_pred eeEEec-CCCCceEEEEEcCccccccccccCCCCCCEEEEEe-----------CCCeEEEEEecCC--------Ccceee
Confidence 111111 1122455555443 22233221 5888999853211 011111
Q ss_pred EEEeecCCCCeEEEEcc-----CcEEEEEecCCcEEEEeCCCCCCCCCCCCCCCcceeeccccCCCCEEEEEEccccc--
Q 006205 291 TCVAALVEPNFCRVACG-----HSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSYHV-- 363 (657)
Q Consensus 291 ~~v~~l~~~~i~~I~~G-----~~~t~aLt~~G~Vy~wG~n~~GqLG~~~~~~~~p~~v~~~l~~~~V~~Ia~G~~ht-- 363 (657)
..........|..++.. ....+....||.|+.|-...... ...............|..++......
T Consensus 199 ~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~v~~~~~s~~g~~l 271 (379)
T 3jrp_A 199 ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG-------PWKKTLLKEEKFPDVLWRASWSLSGNVL 271 (379)
T ss_dssp EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS-------CCEEEESSSSCCSSCEEEEEECSSSCCE
T ss_pred EEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc-------cceeeeeccccCCCcEEEEEEcCCCCEE
Confidence 11111112356666544 33455556789999996433110 00001111111234466666654433
Q ss_pred cccccCCeEEEEecC
Q 006205 364 AVLTSKTEVYTWGKG 378 (657)
Q Consensus 364 ~aLt~~G~vy~WG~n 378 (657)
++-..+|.|+.|=.+
T Consensus 272 ~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 272 ALSGGDNKVTLWKEN 286 (379)
T ss_dssp EEEESSSSEEEEEEE
T ss_pred EEecCCCcEEEEeCC
Confidence 333578888888543
No 135
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=24.38 E-value=51 Score=23.94 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=11.2
Q ss_pred HHHHHHHHHhhhhc
Q 006205 643 SQEVIKLRAQVFAF 656 (657)
Q Consensus 643 ~~~~~~~~~~~~~~ 656 (657)
.+|+.+|++||+.|
T Consensus 36 R~el~~Lkeele~L 49 (51)
T 3m91_A 36 RQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 67888888888876
No 136
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=24.18 E-value=47 Score=26.42 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=20.0
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhhc
Q 006205 633 DDAKRTNDSLSQEVIKLRAQVFAF 656 (657)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~ 656 (657)
.+.++.|+.|.+||.+|+.+.+.|
T Consensus 48 ~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 48 REAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788999999999999988764
No 137
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.91 E-value=25 Score=27.13 Aligned_cols=33 Identities=24% Similarity=0.665 Sum_probs=23.1
Q ss_pred cCcccCCCCCCCCCcccccccccccccceeeccC
Q 006205 427 VDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSC 460 (657)
Q Consensus 427 ~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~C 460 (657)
.....|..|+...++...--..| .||..||...
T Consensus 13 ~~~~rC~~C~kk~gL~~~egf~C-rCg~~FC~~H 45 (67)
T 1x4w_A 13 KSRRRCFQCQTKLELVQQELGSC-RCGYVFCMLH 45 (67)
T ss_dssp SCTTBCSSSCCBCCHHHHHHHCC-SSSCCCCTTT
T ss_pred ccCCcchhhCCeecccccCceEe-cCCCEehhcc
Confidence 34578999999988432111458 6999999753
No 138
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.73 E-value=57 Score=23.84 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=20.8
Q ss_pred ccchhhhhhhhHHHHHHHHHHHhhhh
Q 006205 630 IVVDDAKRTNDSLSQEVIKLRAQVFA 655 (657)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (657)
.-.++|+..++.|.+++..|+++++.
T Consensus 26 ~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 26 LELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34678888888888888888888764
No 139
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=23.39 E-value=17 Score=26.97 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=21.6
Q ss_pred CcccchhhhhhhhHHHHHHHHHHHhhhhc
Q 006205 628 PKIVVDDAKRTNDSLSQEVIKLRAQVFAF 656 (657)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (657)
++.-+..|-|.|..|++|+..||..+.+|
T Consensus 25 SeAkiQQLmkVN~~ls~Elr~mQ~~lq~L 53 (63)
T 2w6a_A 25 SEAKVQQLMKVNSSLSDELRKLQREIHKL 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHhhhHHHHHHHHHHHHH
Confidence 34445677889999999988888866544
No 140
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=23.14 E-value=5.7e+02 Score=25.51 Aligned_cols=233 Identities=10% Similarity=-0.062 Sum_probs=0.0
Q ss_pred EEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeCCc-----eEEEEEcCCcEEEEc
Q 006205 79 QNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEY-----HTCAVTLSGDLYTWG 153 (657)
Q Consensus 79 ~~Ia~G~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~~-----hs~aLt~dG~Vy~wG 153 (657)
..++.+..+.+++|+.|++|..-...--..+....-. .....+...++.+|+.+..-.. +.+++|++|.+.-.-
T Consensus 44 ~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~-~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~ 122 (323)
T 1wp5_A 44 MLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ-HIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTE 122 (323)
T ss_dssp EEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE-EGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEE
T ss_pred EEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCc-ChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeE
Q ss_pred CCCCCCCccCCCCCcceeeeeeecCCCCCceEEEEee--CCceEEEEecCCcEEEEecCCCCccCCCCCcccccceeeec
Q 006205 154 DGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISC--GPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVES 231 (657)
Q Consensus 154 ~n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~--G~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~ 231 (657)
...+ ...............++..++.+.. +.++.+++|++|+++.+-.++.-.+|....-. +.+..
T Consensus 123 l~e~--------~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV----~~i~L 190 (323)
T 1wp5_A 123 LKHY--------KAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGV----KGMNL 190 (323)
T ss_dssp GGGG--------CCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCE----ECCCC
T ss_pred HHHh--------hhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCE----EEEEe
Q ss_pred cCCCeEEEEEe--CCC-eeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeecCCCCeEEEEccC
Q 006205 232 LKGLRTVRAAC--GVW-HTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGH 308 (657)
Q Consensus 232 l~~~~I~~Ia~--G~~-hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~~~~i~~I~~G~ 308 (657)
-.+..|+.+.. ... .-+.++ ..|...-.-..++-..+.+.......-..-......-...+..+.
T Consensus 191 ~~~d~Vv~~~~~~~~~~~ll~vt------------~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~ 258 (323)
T 1wp5_A 191 KEGDYIVSGQLITSKDESIVVAT------------QRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDS 258 (323)
T ss_dssp CTTCCEEEEEEECCTTCEEEEEE------------TTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTT
T ss_pred CCCCEEEEEEEEcCCCcEEEEEE------------CCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCC
Q ss_pred cEEEEEecCCcEEEEeCCCCCCCCCCCC
Q 006205 309 SLTVALTTSGHVYTMGSPVYGQLGNPQA 336 (657)
Q Consensus 309 ~~t~aLt~~G~Vy~wG~n~~GqLG~~~~ 336 (657)
...+++|++|.+.-+--++.-..|....
T Consensus 259 ~~i~~it~~g~~ir~~~~~i~~~~R~t~ 286 (323)
T 1wp5_A 259 DTIYLQTEKSFIETIKVGDIRFSDRYSN 286 (323)
T ss_dssp CEEEEEETTSCEEEEEGGGSCBCCSSSC
T ss_pred CeEEEEeCCCeEEEEEhhhcCccCccCC
No 141
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=22.57 E-value=6.1e+02 Score=25.61 Aligned_cols=200 Identities=13% Similarity=0.107 Sum_probs=94.2
Q ss_pred eEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEe---CCceEEEEEcCCcEEEEcCCCCCCCccC
Q 006205 87 HAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVAC---GEYHTCAVTLSGDLYTWGDGTYNFGLLG 163 (657)
Q Consensus 87 h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~---G~~hs~aLt~dG~Vy~wG~n~~~~GqLG 163 (657)
+.+.-..+|.|..|-.+...... ....+..........|..|+. +....+....+|.|+.|-.... ..
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~~-----~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~--~~-- 266 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKEH-----RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN--NT-- 266 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBGG-----GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCS--CS--
T ss_pred eEEEEeCCCeEEEEeCCCCCCCC-----ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCC--CC--
Confidence 55556678999999876532211 001111111112335777776 3445556678999999965521 10
Q ss_pred CCCCcceeeeeeecCCCCCceEEEEeeCC---ceEEEEecCCcEEEEecCCCCccCCCCCcccccceeeeccCCCeEEEE
Q 006205 164 HGNEVSHWVPKRVNGPLEGIHVSSISCGP---WHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRA 240 (657)
Q Consensus 164 ~~~~~~~~~P~~v~~~l~~~~I~~Ia~G~---~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~I 240 (657)
... . ..+.. ....|..|+... +..+.-..+|.|..|-....++. ...+.. ....|..+
T Consensus 267 -~~~-~----~~~~~--~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~----------~~~~~~-h~~~v~~i 327 (430)
T 2xyi_A 267 -SKP-S----HTVDA--HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK----------LHSFES-HKDEIFQV 327 (430)
T ss_dssp -SSC-S----EEEEC--CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC----------SEEEEC-CSSCEEEE
T ss_pred -Ccc-e----eEeec--CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC----------eEEeec-CCCCEEEE
Confidence 000 0 01111 122455555533 23444567899999965432210 011111 12356666
Q ss_pred EeCCCe-e-EEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeecC--CCCeEEEEccCc---EEEE
Q 006205 241 ACGVWH-T-AAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALV--EPNFCRVACGHS---LTVA 313 (657)
Q Consensus 241 a~G~~h-s-~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~--~~~i~~I~~G~~---~t~a 313 (657)
+..... . ++.. ..+|.|..|-....+............|..+.... ...|..++.... ..+.
T Consensus 328 ~~sp~~~~~l~s~-----------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s 396 (430)
T 2xyi_A 328 QWSPHNETILASS-----------GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICS 396 (430)
T ss_dssp EECSSCTTEEEEE-----------ETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEE
T ss_pred EECCCCCCEEEEE-----------eCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEE
Confidence 655433 2 2222 15888999965442211000000000122222222 234666554322 4555
Q ss_pred EecCCcEEEEeC
Q 006205 314 LTTSGHVYTMGS 325 (657)
Q Consensus 314 Lt~~G~Vy~wG~ 325 (657)
...+|.|..|--
T Consensus 397 ~s~dg~i~iw~~ 408 (430)
T 2xyi_A 397 VSEDNIMQVWQM 408 (430)
T ss_dssp EETTSEEEEEEE
T ss_pred EECCCCEEEeEc
Confidence 677888888864
No 142
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=22.36 E-value=5.7e+02 Score=25.21 Aligned_cols=216 Identities=11% Similarity=0.052 Sum_probs=106.9
Q ss_pred EEEeCCceEEEEEcCCcEEEEcCCCCCCCccCCCCCcceeee--eeecCCCCCceEEEEee-----CCceEEEEecCCcE
Q 006205 132 LVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVP--KRVNGPLEGIHVSSISC-----GPWHTAVVTSAGQL 204 (657)
Q Consensus 132 ~Va~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~~~~~~~~~P--~~v~~~l~~~~I~~Ia~-----G~~hs~~Lt~~G~v 204 (657)
.++.+..+.+++|+.|++|..-... +-.......-.| ..+. ..++++|+.+.. ...+.+++|++|.+
T Consensus 48 ~~~~~~~~ll~fT~~G~~~~~~~~e-----lp~~~~~a~G~~i~~~l~-l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~ 121 (307)
T 1zi0_A 48 LVANTHDHILCFSSRGRVYSMKVYQ-----LPEATRGARGRPIVNLLP-LEQDERITAILPVTEFEEGVKVFMATANGTV 121 (307)
T ss_dssp EEEETTCEEEEEETTSEEEEEEGGG-----SCCCCSSSCCEEGGGTSC-CCTTCCEEEEEEESCCCTTCEEEEEETTSEE
T ss_pred EEECCCCEEEEEECCCEEEEEEhhH-----CcCCCCCCCCeEhhhccC-CCCCCEEEEEEEeccCCCCcEEEEEeCCCeE
Confidence 3566788899999999999885441 111111111122 1122 234667777754 23457888999988
Q ss_pred EEEecCCCCccCCCCCccccccee-eeccCCCeEEEE--EeCCCeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCC
Q 006205 205 FTFGDGTFGVLGHGDRKSVSIPRE-VESLKGLRTVRA--ACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGH 281 (657)
Q Consensus 205 y~wG~n~~GqLG~g~~~~~~~P~~-v~~l~~~~I~~I--a~G~~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~ 281 (657)
.-.-..+|-.... .... +....+..++.+ ..+..+-++++ ++|+++-+-..+--.+|.
T Consensus 122 Krt~l~e~~~~~r-------~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T------------~~G~~irf~~~~v~~~gr 182 (307)
T 1zi0_A 122 KKTVLTEFNRLRT-------AGKVAIKLVDGDELIGVDLTSGEDEVMLFS------------AEGKVVRFKESSVRAMGC 182 (307)
T ss_dssp EEEEGGGGTTCCT-------TCEESSCCCTTCCEEEEEEECTTCEEEEEE------------TTSEEEEEEGGGSCBCCT
T ss_pred EEEEHHHhhcccc-------CCeEEEEECCCCEEEEEEEeCCCCEEEEEC------------CCCcEEEEEHHHcCccCC
Confidence 7765433321110 0101 111112233332 23445566666 689998887655444443
Q ss_pred CCCCceeecEEEeecCCCCeEEEEcc--CcEEEEEecCCcEEEEeCCCCCCCCCCCCCCCcceeeccccCCCCEEEEEE-
Q 006205 282 GDKEAKLVPTCVAALVEPNFCRVACG--HSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIAC- 358 (657)
Q Consensus 282 g~~~~~~~P~~v~~l~~~~i~~I~~G--~~~t~aLt~~G~Vy~wG~n~~GqLG~~~~~~~~p~~v~~~l~~~~V~~Ia~- 358 (657)
..... ..+....+..|+.+..- ....+++|+.|.+--+--.+|-.-+.+......+... -.+..++.+..
T Consensus 183 ~a~Gv----~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~---~~~~~lv~~~~v 255 (307)
T 1zi0_A 183 NTTGV----RGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVT---ERNGLVVGAVQV 255 (307)
T ss_dssp TCCCE----ECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCC---TTTCSEEEEEEE
T ss_pred CCCCe----EeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEec---CCCCeEEEEEEe
Confidence 22111 11222234566665432 2346677777765544333332112211111111111 11133444433
Q ss_pred -ccccccccccCCeEEEEecCC
Q 006205 359 -GSYHVAVLTSKTEVYTWGKGA 379 (657)
Q Consensus 359 -G~~ht~aLt~~G~vy~WG~n~ 379 (657)
+....+++|++|.+.-.-.++
T Consensus 256 ~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 256 DDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp CTTCEEEEEESSCCEEEEEGGG
T ss_pred CCCceEEEEcCCCcEEEEeccc
Confidence 455678899999888765443
No 143
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=21.78 E-value=36 Score=23.49 Aligned_cols=13 Identities=38% Similarity=0.876 Sum_probs=10.6
Q ss_pred CCCeeeCcchHHh
Q 006205 475 NKPYRVCDNCFNK 487 (657)
Q Consensus 475 ~~~~RvC~~C~~~ 487 (657)
...||||+.|-.-
T Consensus 14 ~~~YRvC~~CgkP 26 (44)
T 2lo3_A 14 PIQYRVCEKCGKP 26 (44)
T ss_dssp CCCEEECTTTCCE
T ss_pred cccchhhcccCCc
Confidence 5789999999654
No 144
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=20.87 E-value=5.8e+02 Score=24.76 Aligned_cols=211 Identities=10% Similarity=0.004 Sum_probs=100.4
Q ss_pred CCCeEEEEecC---CeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEec----cCCCCcEEEEEe---CCceEEEEE
Q 006205 75 VLDVQNIACGG---RHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLID----ALSNMNIELVAC---GEYHTCAVT 144 (657)
Q Consensus 75 ~~~I~~Ia~G~---~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~----~l~~~~I~~Va~---G~~hs~aLt 144 (657)
...|..|+... ...+.-..+|.|..|-.........-. ......+. ......|..++. +....+...
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 119 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYT---CKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS 119 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEE---ECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEe---ccccccccccccccCCCcEEEEEEccCCCcEEEEEe
Confidence 34677787753 455566789999999765432221100 00000000 012346777776 344566667
Q ss_pred cCCcEEEEcCCCCCCCccCCCCCcceeeeeeecCCCCCceEEEEeeCC-----ceEEEEecCCcEEEEecCCCCccCCCC
Q 006205 145 LSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGP-----WHTAVVTSAGQLFTFGDGTFGVLGHGD 219 (657)
Q Consensus 145 ~dG~Vy~wG~n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~G~-----~hs~~Lt~~G~vy~wG~n~~GqLG~g~ 219 (657)
.+|.|+.|-... ++ ....+.. ...+..+.... ...++-..+|.|+.|-......
T Consensus 120 ~d~~i~iwd~~~---~~----------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~----- 178 (408)
T 4a11_B 120 FDKTLKVWDTNT---LQ----------TADVFNF---EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC----- 178 (408)
T ss_dssp TTSEEEEEETTT---TE----------EEEEEEC---SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC-----
T ss_pred CCCeEEEeeCCC---Cc----------cceeccC---CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce-----
Confidence 799999995441 11 0111111 11234443322 2456667889999996432110
Q ss_pred CcccccceeeeccCCCeEEEEEeCCCee--EEEEEeeecCCCccccCCCcEEEEcCCCCCCC-CC---CCCCceeecEEE
Q 006205 220 RKSVSIPREVESLKGLRTVRAACGVWHT--AAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRL-GH---GDKEAKLVPTCV 293 (657)
Q Consensus 220 ~~~~~~P~~v~~l~~~~I~~Ia~G~~hs--~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqL-G~---g~~~~~~~P~~v 293 (657)
...+.. ....|..++...... ++... .+|.|+.|-....... -. ........+...
T Consensus 179 ------~~~~~~-~~~~v~~~~~~~~~~~ll~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (408)
T 4a11_B 179 ------SHILQG-HRQEILAVSWSPRYDYILATAS-----------ADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA 240 (408)
T ss_dssp ------CEEECC-CCSCEEEEEECSSCTTEEEEEE-----------TTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTS
T ss_pred ------eeeecC-CCCcEEEEEECCCCCcEEEEEc-----------CCCcEEEEECCCCCcccccccccccccceeeccc
Confidence 111111 123466666544432 33321 6899999975432210 00 000000000000
Q ss_pred eecCCCCeEEEEcc--CcEEEEEecCCcEEEEeCCC
Q 006205 294 AALVEPNFCRVACG--HSLTVALTTSGHVYTMGSPV 327 (657)
Q Consensus 294 ~~l~~~~i~~I~~G--~~~t~aLt~~G~Vy~wG~n~ 327 (657)
.......|..++.. ..+.++...+|.|+.|-...
T Consensus 241 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 241 NTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp SCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred cccccCceeEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 01112345555443 33556667889999997543
No 145
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=20.84 E-value=6.1e+02 Score=24.94 Aligned_cols=233 Identities=11% Similarity=0.067 Sum_probs=107.0
Q ss_pred CeEEEEec-CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeCC--ceEEEEEcCCcEEEEc
Q 006205 77 DVQNIACG-GRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGE--YHTCAVTLSGDLYTWG 153 (657)
Q Consensus 77 ~I~~Ia~G-~~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~--~hs~aLt~dG~Vy~wG 153 (657)
.|..|+.. ....++-..+|.|..|-......+. .......-....|..|+... ...+.-..||.|..|-
T Consensus 96 ~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~--------~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd 167 (357)
T 4g56_B 96 GVTDVAWVSEKGILVASDSGAVELWEILEKESLL--------VNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWD 167 (357)
T ss_dssp CEEEEEEETTTEEEEEETTSCEEEC--------C--------CCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred CEEEEEEcCCCCEEEEECCCEEEEeeccccceeE--------EEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 46666643 3445555677888888533211110 00000001123566666543 3444456789999995
Q ss_pred CCCCCCCccCCCCCcceeeeeeecCCCCCceEEEEeeC---CceEEEEecCCcEEEEecCCCCccCCCCCcccccceeee
Q 006205 154 DGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCG---PWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVE 230 (657)
Q Consensus 154 ~n~~~~GqLG~~~~~~~~~P~~v~~~l~~~~I~~Ia~G---~~hs~~Lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~ 230 (657)
... ++ ....+.. ....|..|+.. ....+....||.|..|-.... +.- ..+.
T Consensus 168 ~~~---~~----------~~~~~~~--h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~-~~~----------~~~~ 221 (357)
T 4g56_B 168 LSQ---KA----------VLKSYNA--HSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKP-KPA----------TRID 221 (357)
T ss_dssp TTT---TE----------EEEEECC--CSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSS-SCB----------CBCC
T ss_pred CCC---Cc----------EEEEEcC--CCCCEEEEEEccCCCceeeeeccCCceEEEECCCC-cee----------eeee
Confidence 441 11 1111221 12346666553 234555667899999842211 100 0000
Q ss_pred -ccCCCeEEEEEeCC--CeeEEEEEeeecCCCccccCCCcEEEEcCCCCCCCCCCCCCceeecEEEeecCCCCeEEEEc-
Q 006205 231 -SLKGLRTVRAACGV--WHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVAC- 306 (657)
Q Consensus 231 -~l~~~~I~~Ia~G~--~hs~al~e~~~~~s~~~~~~~G~ly~wG~n~~gqLG~g~~~~~~~P~~v~~l~~~~i~~I~~- 306 (657)
......+..++... .+.++.-. .++.|+.|-..... +..........|..++.
T Consensus 222 ~~~~~~~v~~v~~sp~~~~~la~g~-----------~d~~i~~wd~~~~~------------~~~~~~~~~~~v~~l~~s 278 (357)
T 4g56_B 222 FCASDTIPTSVTWHPEKDDTFACGD-----------ETGNVSLVNIKNPD------------SAQTSAVHSQNITGLAYS 278 (357)
T ss_dssp CTTCCSCEEEEEECTTSTTEEEEEE-----------SSSCEEEEESSCGG------------GCEEECCCSSCEEEEEEC
T ss_pred eccccccccchhhhhcccceEEEee-----------cccceeEEECCCCc------------EeEEEeccceeEEEEEEc
Confidence 11122455565432 22333321 58889998542211 00111112235656654
Q ss_pred --cCcEEEEEecCCcEEEEeCCCCCCCCCCCCCCCcceeeccccCCCCEEEEEEcc-cccccc--ccCCeEEEEecCC
Q 006205 307 --GHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGS-YHVAVL--TSKTEVYTWGKGA 379 (657)
Q Consensus 307 --G~~~t~aLt~~G~Vy~wG~n~~GqLG~~~~~~~~p~~v~~~l~~~~V~~Ia~G~-~ht~aL--t~~G~vy~WG~n~ 379 (657)
|....+.-..||.|+.|-... ++ .+...--...|..|+... ...+++ ..||.|+.|=...
T Consensus 279 p~~~~~lasgs~D~~i~iwd~~~-~~------------~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 279 YHSSPFLASISEDCTVAVLDADF-SE------------VFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp SSSSCCEEEEETTSCEEEECTTS-CE------------EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred CCCCCEEEEEeCCCEEEEEECCC-Cc------------EeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 223334456789999995321 11 111111234577787652 333333 4689999996543
No 146
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.68 E-value=22 Score=27.06 Aligned_cols=51 Identities=20% Similarity=0.473 Sum_probs=34.0
Q ss_pred cCcccCCCCCCCCCcccccccccccccceeeccCCCccccccccCCCCCCCeeeCcchHHhhh
Q 006205 427 VDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLR 489 (657)
Q Consensus 427 ~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~ 489 (657)
.+...|..|...|.... ...||..||..|....... ....+.|..|...+.
T Consensus 18 ~~~~~C~IC~~~~~~~~-----~~~CgH~fC~~Ci~~~~~~-------~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 18 QEEVICPICLDILQKPV-----TIDCGHNFCLKCITQIGET-------SCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCBCTTTCSBCSSEE-----ECTTCCEEEHHHHHHHCSS-------SCSCCCCSSSCCCCC
T ss_pred ccCCEeccCCcccCCeE-----EcCCCChhhHHHHHHHHHc-------CCCCCCCCCCCCcCC
Confidence 45567999998876211 2379999999997665321 123567888877654
No 147
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=20.62 E-value=6.4e+02 Score=25.15 Aligned_cols=72 Identities=11% Similarity=0.051 Sum_probs=38.3
Q ss_pred CCeEEEEecC---CeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceEeccCCCCcEEEEEeCC--ceEEEEEcCCcEE
Q 006205 76 LDVQNIACGG---RHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGE--YHTCAVTLSGDLY 150 (657)
Q Consensus 76 ~~I~~Ia~G~---~h~~~lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~--~hs~aLt~dG~Vy 150 (657)
..|..|+... ...+.-..||.|..|-..... . +. ...+..... ....|..|+... ...+.-..||.|.
T Consensus 64 ~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~-~--~~---~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~dg~i~ 136 (437)
T 3gre_A 64 NSITSSAVSPGETPYLITGSDQGVIKIWNLKEII-V--GE---VYSSSLTYD-CSSTVTQITMIPNFDAFAVSSKDGQII 136 (437)
T ss_dssp SCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHH-T--TC---CCSCSEEEE-CSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CceEEEEECCCCCCEEEEecCCceEEEeECcccc-c--Cc---ccceeeecc-CCCCEEEEEEeCCCCEEEEEeCCCEEE
Confidence 3577777654 344445678999999642200 0 00 011111101 133677776643 4555667789999
Q ss_pred EEcC
Q 006205 151 TWGD 154 (657)
Q Consensus 151 ~wG~ 154 (657)
.|-.
T Consensus 137 vwd~ 140 (437)
T 3gre_A 137 VLKV 140 (437)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9954
No 148
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.34 E-value=28 Score=26.25 Aligned_cols=50 Identities=24% Similarity=0.400 Sum_probs=35.9
Q ss_pred cCcccCCCCCCCCCcccccccccccccceeeccCCCccccccccCCCCCCCeeeCcchHHhhhccc
Q 006205 427 VDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTF 492 (657)
Q Consensus 427 ~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~~~~ 492 (657)
.+...|..|...|.. ....||-.||..|...-.. ....|..|...+....
T Consensus 13 ~~~~~C~IC~~~~~~------~~~~CgH~fc~~Ci~~~~~----------~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD------LILPCAHSFCQKCIDKWSD----------RHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS------EEETTTEEECHHHHHHSSC----------CCSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC------cccCCCCcccHHHHHHHHH----------CcCcCCCcCCcccCCC
Confidence 456779999888763 2356999999999765321 2467999988876433
No 149
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=20.19 E-value=23 Score=27.38 Aligned_cols=55 Identities=16% Similarity=0.355 Sum_probs=35.3
Q ss_pred cCcccCCCCCCCCCcccccccccccccceeeccCCCccccccccCCCCCCCeeeCcchHHhhh
Q 006205 427 VDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLR 489 (657)
Q Consensus 427 ~d~~~C~~C~~~F~~f~rkrh~C~~cG~~~C~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~ 489 (657)
.+...|..|...|.... -..||-.||..|........... ......|..|...+.
T Consensus 10 ~~~~~C~IC~~~~~~p~-----~l~CgH~fC~~Ci~~~~~~~~~~---~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 10 QEEVTCPICLELLTEPL-----SLDCGHSLCRACITVSNKEAVTS---MGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCEETTTTEECSSCC-----CCSSSCCCCHHHHSCCCCCCSSS---CCCCCCCSSSCCCCC
T ss_pred ccCCCCcCCCcccCCee-----ECCCCCHHHHHHHHHHHHhcccC---CCCCCcCCCCCCcCC
Confidence 34567889988775311 13699999999987654332111 133567888877664
Done!