BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006206
(657 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 94/308 (30%), Positives = 143/308 (46%), Gaps = 48/308 (15%)
Query: 76 SNSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLG 135
SN + L + + G +PS L L KL DL L N+L G IP E+ + ++ L L
Sbjct: 412 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 471
Query: 136 INNFTGRVPTELGNLTKLISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQEF 195
N+ TG +P+ L N T L + G +PK +G+L +L L + ++ +G+IP E
Sbjct: 472 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 531
Query: 196 ANLKSLRILWASDNLFTGKIPE-FFGTLTELA-------------------DLRLQGTLL 235
+ +SL L + NLF G IP F ++A + G LL
Sbjct: 532 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 591
Query: 236 EGPIPRSFRALNKLEDLRIGDLSAE------------DSTLDFLE--------------- 268
E RS LN+L ++++ + ++ FL+
Sbjct: 592 EFQGIRS-EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 650
Query: 269 SQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGN 328
S L IL+L + +SG IPD++G L +LDLS NKL G+IP ++ L+ L + L N
Sbjct: 651 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 710
Query: 329 NNLSGELP 336
NNLSG +P
Sbjct: 711 NNLSGPIP 718
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 142/300 (47%), Gaps = 25/300 (8%)
Query: 93 GELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTK 152
G++P L +L+ L+L N L+G+IP+ +G LS ++ L L +N G +P EL +
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 464
Query: 153 LISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFT 212
L +L G +P L T+L + + ++ +TG IP+ L++L IL S+N F+
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 524
Query: 213 GKIPEFFGTLTELADLRLQGTLLEGPIPRS-----------FRALNKLEDLRIGDLSAE- 260
G IP G L L L L G IP + F A + ++ + E
Sbjct: 525 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 584
Query: 261 DSTLDFLESQ----KSLSILSLRN-CRVS-----GKIPDQLGTFAKLQLLDLSFNKLTGQ 310
+ LE Q + L+ LS RN C ++ G + LD+S+N L+G
Sbjct: 585 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 644
Query: 311 IPTSLQDLSTLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFAKGGLSM 369
IP + + L L LG+N++SG +P + L LD+S N L G +P+ A L+M
Sbjct: 645 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ--AMSALTM 702
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 97/341 (28%), Positives = 139/341 (40%), Gaps = 84/341 (24%)
Query: 73 DCTSNSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYL 132
DC++ + HL I + G+ + +L LN+ N G IP L ++QYL
Sbjct: 218 DCSA----LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL 271
Query: 133 SLGINNFTGRVPTEL-GNLTKLISLXXXXXXXXGPLPKELG------------------- 172
SL N FTG +P L G L L G +P G
Sbjct: 272 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 331
Query: 173 ------KLTSLQQLYIDSSGVTGSIPQEFANL---------------------------K 199
K+ L+ L + + +G +P+ NL
Sbjct: 332 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 391
Query: 200 SLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSA 259
+L+ L+ +N FTGKIP +EL L L L G IP S +L+KL DL++
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL----- 446
Query: 260 EDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLS 319
L+ LE G+IP +L L+ L L FN LTG+IP+ L + +
Sbjct: 447 ---WLNMLE----------------GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 487
Query: 320 TLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLP 359
L ++ L NN L+GE+P I NL L +S N SGN+P
Sbjct: 488 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 528
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 109/263 (41%), Gaps = 54/263 (20%)
Query: 90 DIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGN 149
D+ GE+PS L L ++L N L G IP IG+L N+ L L N+F+G +P ELG+
Sbjct: 474 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 533
Query: 150 LTKLISLXXXXXXXXGPLP----KELGKLTS-----LQQLYIDSSGVT------------ 188
LI L G +P K+ GK+ + + +YI + G+
Sbjct: 534 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 593
Query: 189 -------------------------GSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLT 223
G F N S+ L S N+ +G IP+ G++
Sbjct: 594 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 653
Query: 224 ELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILS---LRN 280
L L L + G IP + L L I DLS+ ++ +L++L+ L N
Sbjct: 654 YLFILNLGHNDISGSIPDE---VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 710
Query: 281 CRVSGKIPD--QLGTFAKLQLLD 301
+SG IP+ Q TF + L+
Sbjct: 711 NNLSGPIPEMGQFETFPPAKFLN 733
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 136/294 (46%), Gaps = 32/294 (10%)
Query: 105 LMDLNLGQNVLNGSIPA--EIGQLSNMQYLSLGIN--NFTGRVPTELGNLTKLISLXXXX 160
L L+L +N L+G + +G S +++L++ N +F G+V L L L L
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSA 157
Query: 161 XXXXGPLPKELGKLTS-----LQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKI 215
G +G + S L+ L I + ++G + + + +L L S N F+ I
Sbjct: 158 NSISGA--NVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGI 213
Query: 216 PEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLES-----Q 270
P F G + L L + G L G R+ +L+ L I S+ F+
Sbjct: 214 P-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI-------SSNQFVGPIPPLPL 265
Query: 271 KSLSILSLRNCRVSGKIPDQL-GTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNN 329
KSL LSL + +G+IPD L G L LDLS N G +P S L+ L L +N
Sbjct: 266 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 325
Query: 330 NLSGELPVNIIAP--NLIALDVSYNPLSGNLPRNFAKGGLSMNVIGSSINANNL 381
N SGELP++ + L LD+S+N SG LP + LS +++ +++NN
Sbjct: 326 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN--LSASLLTLDLSSNNF 377
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 5/119 (4%)
Query: 75 TSNSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSL 134
T N C+IT ++Y G +M L++ N+L+G IP EIG + + L+L
Sbjct: 606 TRNPCNITS-RVYG----GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 660
Query: 135 GINNFTGRVPTELGNLTKLISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQ 193
G N+ +G +P E+G+L L L G +P+ + LT L ++ + ++ ++G IP+
Sbjct: 661 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 3/135 (2%)
Query: 109 NLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLXXXXXXXXGPLP 168
N+ V G +M +L + N +G +P E+G++ L L G +P
Sbjct: 611 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
Query: 169 KELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEF--FGTLTELA 226
E+G L L L + S+ + G IPQ + L L + S+N +G IPE F T
Sbjct: 671 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK 730
Query: 227 DLRLQGTLLEGPIPR 241
L G L P+PR
Sbjct: 731 FLNNPG-LCGYPLPR 744
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 94/308 (30%), Positives = 143/308 (46%), Gaps = 48/308 (15%)
Query: 76 SNSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLG 135
SN + L + + G +PS L L KL DL L N+L G IP E+ + ++ L L
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474
Query: 136 INNFTGRVPTELGNLTKLISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQEF 195
N+ TG +P+ L N T L + G +PK +G+L +L L + ++ +G+IP E
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534
Query: 196 ANLKSLRILWASDNLFTGKIPE-FFGTLTELA-------------------DLRLQGTLL 235
+ +SL L + NLF G IP F ++A + G LL
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594
Query: 236 EGPIPRSFRALNKLEDLRIGDLSAE------------DSTLDFLE--------------- 268
E RS LN+L ++++ + ++ FL+
Sbjct: 595 EFQGIRS-EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653
Query: 269 SQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGN 328
S L IL+L + +SG IPD++G L +LDLS NKL G+IP ++ L+ L + L N
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713
Query: 329 NNLSGELP 336
NNLSG +P
Sbjct: 714 NNLSGPIP 721
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 89/300 (29%), Positives = 143/300 (47%), Gaps = 25/300 (8%)
Query: 93 GELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTK 152
G++P L +L+ L+L N L+G+IP+ +G LS ++ L L +N G +P EL +
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467
Query: 153 LISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFT 212
L +L G +P L T+L + + ++ +TG IP+ L++L IL S+N F+
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527
Query: 213 GKIPEFFGTLTELADLRLQGTLLEGPIPRS-----------FRALNKLEDLRIGDLSAE- 260
G IP G L L L L G IP + F A + ++ + E
Sbjct: 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587
Query: 261 DSTLDFLESQ----KSLSILSLRN-CRVSGKI-----PDQLGTFAKLQLLDLSFNKLTGQ 310
+ LE Q + L+ LS RN C ++ ++ + LD+S+N L+G
Sbjct: 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 647
Query: 311 IPTSLQDLSTLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFAKGGLSM 369
IP + + L L LG+N++SG +P + L LD+S N L G +P+ A L+M
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ--AMSALTM 705
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 97/341 (28%), Positives = 139/341 (40%), Gaps = 84/341 (24%)
Query: 73 DCTSNSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYL 132
DC++ + HL I + G+ + +L LN+ N G IP L ++QYL
Sbjct: 221 DCSA----LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL 274
Query: 133 SLGINNFTGRVPTEL-GNLTKLISLXXXXXXXXGPLPKELG------------------- 172
SL N FTG +P L G L L G +P G
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 173 ------KLTSLQQLYIDSSGVTGSIPQEFANL---------------------------K 199
K+ L+ L + + +G +P+ NL
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394
Query: 200 SLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSA 259
+L+ L+ +N FTGKIP +EL L L L G IP S +L+KL DL++
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL----- 449
Query: 260 EDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLS 319
L+ LE G+IP +L L+ L L FN LTG+IP+ L + +
Sbjct: 450 ---WLNMLE----------------GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 490
Query: 320 TLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLP 359
L ++ L NN L+GE+P I NL L +S N SGN+P
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 109/263 (41%), Gaps = 54/263 (20%)
Query: 90 DIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGN 149
D+ GE+PS L L ++L N L G IP IG+L N+ L L N+F+G +P ELG+
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
Query: 150 LTKLISLXXXXXXXXGPLP----KELGKLTS-----LQQLYIDSSGVT------------ 188
LI L G +P K+ GK+ + + +YI + G+
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596
Query: 189 -------------------------GSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLT 223
G F N S+ L S N+ +G IP+ G++
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656
Query: 224 ELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILS---LRN 280
L L L + G IP + L L I DLS+ ++ +L++L+ L N
Sbjct: 657 YLFILNLGHNDISGSIPDE---VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713
Query: 281 CRVSGKIPD--QLGTFAKLQLLD 301
+SG IP+ Q TF + L+
Sbjct: 714 NNLSGPIPEMGQFETFPPAKFLN 736
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 136/294 (46%), Gaps = 32/294 (10%)
Query: 105 LMDLNLGQNVLNGSIPA--EIGQLSNMQYLSLGIN--NFTGRVPTELGNLTKLISLXXXX 160
L L+L +N L+G + +G S +++L++ N +F G+V L L L L
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSA 160
Query: 161 XXXXGPLPKELGKLTS-----LQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKI 215
G +G + S L+ L I + ++G + + + +L L S N F+ I
Sbjct: 161 NSISGA--NVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGI 216
Query: 216 PEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLES-----Q 270
P F G + L L + G L G R+ +L+ L I S+ F+
Sbjct: 217 P-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI-------SSNQFVGPIPPLPL 268
Query: 271 KSLSILSLRNCRVSGKIPDQL-GTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNN 329
KSL LSL + +G+IPD L G L LDLS N G +P S L+ L L +N
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328
Query: 330 NLSGELPVNIIAP--NLIALDVSYNPLSGNLPRNFAKGGLSMNVIGSSINANNL 381
N SGELP++ + L LD+S+N SG LP + LS +++ +++NN
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN--LSASLLTLDLSSNNF 380
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 5/119 (4%)
Query: 75 TSNSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSL 134
T N C+IT ++Y G +M L++ N+L+G IP EIG + + L+L
Sbjct: 609 TRNPCNITS-RVYG----GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 663
Query: 135 GINNFTGRVPTELGNLTKLISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQ 193
G N+ +G +P E+G+L L L G +P+ + LT L ++ + ++ ++G IP+
Sbjct: 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 3/135 (2%)
Query: 109 NLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLXXXXXXXXGPLP 168
N+ V G +M +L + N +G +P E+G++ L L G +P
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
Query: 169 KELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEF--FGTLTELA 226
E+G L L L + S+ + G IPQ + L L + S+N +G IPE F T
Sbjct: 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK 733
Query: 227 DLRLQGTLLEGPIPR 241
L G L P+PR
Sbjct: 734 FLNNPG-LCGYPLPR 747
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 87/356 (24%), Positives = 140/356 (39%), Gaps = 85/356 (23%)
Query: 49 LTTIDPCTRNASWASENANPRVACDCTSNSCHITHLKIYALDIMGELPSELFMLRKLMDL 108
L T D C R +W V CD + + + +L + L++ P
Sbjct: 28 LPTTDCCNR--TWLG------VLCDTDTQTYRVNNLDLSGLNLPKPYP------------ 67
Query: 109 NLGQNVLNGSIPAEIGQLSNMQYLSLG-INNFTGRVPTELGNLTKLISLXXXXXXXXGPL 167
IP+ + L + +L +G INN G P+
Sbjct: 68 ----------IPSSLANLPYLNFLYIGGINNLVG------------------------PI 93
Query: 168 PKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELAD 227
P + KLT L LYI + V+G+IP + +K+L L S N +G +P +L L
Sbjct: 94 PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153
Query: 228 LRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKI 287
+ G + G IP S+ + +KL + +++ R++GKI
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKL-----------------------FTSMTISRNRLTGKI 190
Query: 288 PDQLGTFAKLQL--LDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLI 345
P TFA L L +DLS N L G Q ++L N+L+ +L ++ NL
Sbjct: 191 PP---TFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLN 247
Query: 346 ALDVSYNPLSGNLPRNFAKGGL--SMNVIGSSINANNLQDGKALGMMQCLHSNTKC 399
LD+ N + G LP+ + S+NV +++ Q G ++N KC
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 72/164 (43%), Gaps = 6/164 (3%)
Query: 169 KELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADL 228
K +LT L+ LY++ + + F LK+L LW +DN F L LA+L
Sbjct: 55 KAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL 114
Query: 229 RLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIP 288
RL L+ PR F +L KL L +G + + SL L L N ++ ++P
Sbjct: 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVP 173
Query: 289 DQLGTFAK---LQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNN 329
+ G F K L+ L L N+L + L L+ L L N
Sbjct: 174 E--GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 1/116 (0%)
Query: 95 LPSELF-MLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKL 153
LP +F L L +L L +N L P L+ + YLSLG N LT L
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
Query: 154 ISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDN 209
L KLT L+ L +D++ + F +L+ L++L +N
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 47/113 (41%)
Query: 219 FGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSL 278
F LT+L L L L+ F+ L LE L + D + + + +L+ L L
Sbjct: 57 FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116
Query: 279 RNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNL 331
++ P + KL L L +N+L L++L+ L L NN L
Sbjct: 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 58/162 (35%), Gaps = 24/162 (14%)
Query: 168 PKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELAD 227
P L L L++D G+ P F L +L+ L+ DN + F L L
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 156
Query: 228 LRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKI 287
L L G + R+FR L+ SL L L RV+
Sbjct: 157 LFLHGNRISSVPERAFRGLH------------------------SLDRLLLHQNRVAHVH 192
Query: 288 PDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNN 329
P +L L L N L+ +L L LQYL L +N
Sbjct: 193 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 78/193 (40%), Gaps = 32/193 (16%)
Query: 178 QQLYIDSSGVTGSIPQEFANLKSLRILWASDNL--------FTGKI-------------- 215
Q++++ + ++ F ++L ILW N+ FTG
Sbjct: 34 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 93
Query: 216 ---PEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKS 272
P F L L L L L+ P FR L L+ L + D + + D +
Sbjct: 94 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 153
Query: 273 LSILSLRNCRVSGKIPDQLGTFAKLQLLD---LSFNKLTGQIPTSLQDLSTLQYLYLGNN 329
L+ L L R+S +P++ F L LD L N++ P + +DL L LYL N
Sbjct: 154 LTHLFLHGNRIS-SVPER--AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 210
Query: 330 NLSGELPVNIIAP 342
NLS LP +AP
Sbjct: 211 NLSA-LPTEALAP 222
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 58/162 (35%), Gaps = 24/162 (14%)
Query: 168 PKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELAD 227
P L L L++D G+ P F L +L+ L+ DN + F L L
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157
Query: 228 LRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKI 287
L L G + R+FR L+ SL L L RV+
Sbjct: 158 LFLHGNRISSVPERAFRGLH------------------------SLDRLLLHQNRVAHVH 193
Query: 288 PDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNN 329
P +L L L N L+ +L L LQYL L +N
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 78/193 (40%), Gaps = 32/193 (16%)
Query: 178 QQLYIDSSGVTGSIPQEFANLKSLRILWASDNL--------FTGKI-------------- 215
Q++++ + ++ F ++L ILW N+ FTG
Sbjct: 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 216 ---PEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKS 272
P F L L L L L+ P FR L L+ L + D + + D +
Sbjct: 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154
Query: 273 LSILSLRNCRVSGKIPDQLGTFAKLQLLD---LSFNKLTGQIPTSLQDLSTLQYLYLGNN 329
L+ L L R+S +P++ F L LD L N++ P + +DL L LYL N
Sbjct: 155 LTHLFLHGNRIS-SVPER--AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211
Query: 330 NLSGELPVNIIAP 342
NLS LP +AP
Sbjct: 212 NLSA-LPTEALAP 223
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 93/238 (39%), Gaps = 24/238 (10%)
Query: 128 NMQYLSLGINNFTGRVPTELGNLTKLISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGV 187
NM+ L LG R +L NL KL L +L L LQ L + +
Sbjct: 334 NMRKLDLGT-----RCLEKLENLQKL-DLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEP 387
Query: 188 TGSIPQEFANLKSLRILWASDNLFTGKIPEF-FGTLTELADLRLQGTLLEGPIPRSFRAL 246
G Q F L +L + K P F L L L L LL+ L
Sbjct: 388 LGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGL 447
Query: 247 NKLEDLRIGDLSAEDSTL---DFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLS 303
L L + S +D ++ + L+ SL IL L +C + + LDLS
Sbjct: 448 QDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLS 507
Query: 304 FNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIA-------LDVSYNPL 354
N LTG +L L L YL + +NN + II P+L+ +++S+NPL
Sbjct: 508 HNSLTGDSMDALSHLKGL-YLNMASNN------IRIIPPHLLPALSQQSIINLSHNPL 558
>pdb|2K46|A Chain A, Xenopus Laevis Malectin Complexed With Nigerose
(Glcalpha1- 3glc)
pdb|2KR2|A Chain A, Xenopus Laevis Malectin Complexed With Maltose
(Glcalpha1-4glc)
Length = 190
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 475 DSELYKTARISPSSLRYYGLGLENGKYRIDLHFAEITMEDSLSWKGLGRRVFDVYIQGER 534
D LY+T R + S Y E G+Y + L FAE+ S ++VFDV + G
Sbjct: 57 DQVLYQTERYNEDSFGYDIPIKEEGEYVLVLKFAEVYFAQS------QQKVFDVRVNGHT 110
Query: 535 VLRDLNIKKEAGGS 548
V++DL+I G S
Sbjct: 111 VVKDLDIFDRVGHS 124
>pdb|2JWP|A Chain A, Malectin
Length = 174
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 475 DSELYKTARISPSSLRYYGLGLENGKYRIDLHFAEITMEDSLSWKGLGRRVFDVYIQGER 534
D LY+T R + S Y E G+Y + L FAE+ S ++VFDV + G
Sbjct: 53 DQVLYQTERYNEDSFGYDIPIKEEGEYVLVLKFAEVYFAQS------QQKVFDVRVNGHT 106
Query: 535 VLRDLNIKKEAGGS 548
V++DL+I G S
Sbjct: 107 VVKDLDIFDRVGHS 120
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 70/167 (41%), Gaps = 8/167 (4%)
Query: 180 LYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKI-PEFFGTLTELADLRLQGTLLEGP 238
L++ S+ + G F L L L SDN + P F L L L L L+
Sbjct: 60 LWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQEL 119
Query: 239 IPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQ 298
P FR L L+ L + D + + + +L+ L L R+ +P+ F L
Sbjct: 120 GPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIP-SVPEH--AFRGLH 176
Query: 299 LLD---LSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAP 342
LD L N + P + +DL L LYL NNLS LP ++ P
Sbjct: 177 SLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS-MLPAEVLVP 222
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 55/162 (33%), Gaps = 24/162 (14%)
Query: 168 PKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELAD 227
P L L L++D G+ P F L +L+ L+ DN F L L
Sbjct: 97 PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTH 156
Query: 228 LRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKI 287
L L G + +FR L+ SL L L V+
Sbjct: 157 LFLHGNRIPSVPEHAFRGLH------------------------SLDRLLLHQNHVARVH 192
Query: 288 PDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNN 329
P +L L L N L+ L L +LQYL L +N
Sbjct: 193 PHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 56/161 (34%), Gaps = 25/161 (15%)
Query: 172 GKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRL- 230
G S Q++++ + ++ F + ++L ILW N G F LT L L L
Sbjct: 28 GIPASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLS 87
Query: 231 QGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQ 290
L P +FR L L L L C + P
Sbjct: 88 DNAQLRVVDPTTFRGLGHLH------------------------TLHLDRCGLQELGPGL 123
Query: 291 LGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNL 331
A LQ L L N L + +DL L +L+L N +
Sbjct: 124 FRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI 164
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 104/256 (40%), Gaps = 36/256 (14%)
Query: 102 LRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLXXXXX 161
L KL+D+ + N + P + L+N+ L+L N T P L NLT L L
Sbjct: 84 LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN 139
Query: 162 XXXGPLPKELGKLTSLQQLYIDSSGVTGSIP--------------------QEFANLKSL 201
L LTSLQQL S+ VT P A L +L
Sbjct: 140 TISDI--SALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 197
Query: 202 RILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAED 261
L A++N + P G LT L +L L G L+ + +L L DL + + +
Sbjct: 198 ESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLAN--NQI 251
Query: 262 STLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTL 321
S L L L+ L L ++S P L L L+L+ N+L P S +L L
Sbjct: 252 SNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNL 307
Query: 322 QYLYLGNNNLSGELPV 337
YL L NN+S PV
Sbjct: 308 TYLTLYFNNISDISPV 323
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 104/256 (40%), Gaps = 36/256 (14%)
Query: 102 LRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLXXXXX 161
L KL+D+ + N + P + L+N+ L+L N T P L NLT L L
Sbjct: 84 LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN 139
Query: 162 XXXGPLPKELGKLTSLQQLYIDSSGVTGSIP--------------------QEFANLKSL 201
L LTSLQQL S+ VT P A L +L
Sbjct: 140 TISDI--SALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 197
Query: 202 RILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAED 261
L A++N + P G LT L +L L G L+ + +L L DL + + +
Sbjct: 198 ESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLAN--NQI 251
Query: 262 STLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTL 321
S L L L+ L L ++S P L L L+L+ N+L P S +L L
Sbjct: 252 SNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNL 307
Query: 322 QYLYLGNNNLSGELPV 337
YL L NN+S PV
Sbjct: 308 TYLTLYFNNISDISPV 323
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 81/170 (47%), Gaps = 14/170 (8%)
Query: 169 KELGKLTSLQQLYIDSSGVTG-SIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELAD 227
K L LT+L++L I S+ V+ S+ + NL+SL A++N + P G LT L +
Sbjct: 170 KPLANLTTLERLDISSNKVSDISVLAKLTNLESL---IATNNQISDITP--LGILTNLDE 224
Query: 228 LRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKI 287
L L G L+ + +L L DL + + + S L L L+ L L ++S
Sbjct: 225 LSLNGNQLKDI--GTLASLTNLTDLDLAN--NQISNLAPLSGLTKLTELKLGANQISNIS 280
Query: 288 PDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPV 337
P L L L+L+ N+L P S +L L YL L NN+S PV
Sbjct: 281 P--LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISPV 326
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 81/170 (47%), Gaps = 14/170 (8%)
Query: 169 KELGKLTSLQQLYIDSSGVTG-SIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELAD 227
K L LT+L++L I S+ V+ S+ + NL+SL A++N + P G LT L +
Sbjct: 166 KPLANLTTLERLDISSNKVSDISVLAKLTNLESL---IATNNQISDITP--LGILTNLDE 220
Query: 228 LRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKI 287
L L G L+ + +L L DL + + + S L L L+ L L ++S
Sbjct: 221 LSLNGNQLKDI--GTLASLTNLTDLDLAN--NQISNLAPLSGLTKLTELKLGANQISNIS 276
Query: 288 PDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPV 337
P L L L+L+ N+L P S +L L YL L NN+S PV
Sbjct: 277 P--LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISPV 322
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 104/256 (40%), Gaps = 36/256 (14%)
Query: 102 LRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLXXXXX 161
L KL+D+ + N + P + L+N+ L+L N T P L NLT L L
Sbjct: 84 LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN 139
Query: 162 XXXGPLPKELGKLTSLQQLYIDSSGVTGSIP--------------------QEFANLKSL 201
L LTSLQQL S+ VT P A L +L
Sbjct: 140 TISDI--SALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 197
Query: 202 RILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAED 261
L A++N + P G LT L +L L G L+ + +L L DL + + +
Sbjct: 198 ESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLAN--NQI 251
Query: 262 STLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTL 321
S L L L+ L L ++S P L L L+L+ N+L P S +L L
Sbjct: 252 SNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNL 307
Query: 322 QYLYLGNNNLSGELPV 337
YL L NN+S PV
Sbjct: 308 TYLTLYFNNISDISPV 323
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 81/170 (47%), Gaps = 14/170 (8%)
Query: 169 KELGKLTSLQQLYIDSSGVTG-SIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELAD 227
K L LT+L++L I S+ V+ S+ + NL+SL A++N + P G LT L +
Sbjct: 171 KPLANLTTLERLDISSNKVSDISVLAKLTNLESL---IATNNQISDITP--LGILTNLDE 225
Query: 228 LRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKI 287
L L G L+ + +L L DL + + + S L L L+ L L ++S
Sbjct: 226 LSLNGNQLKDI--GTLASLTNLTDLDLAN--NQISNLAPLSGLTKLTELKLGANQISNIS 281
Query: 288 PDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPV 337
P L L L+L+ N+L P S +L L YL L NN+S PV
Sbjct: 282 P--LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISPV 327
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 81/170 (47%), Gaps = 14/170 (8%)
Query: 169 KELGKLTSLQQLYIDSSGVTG-SIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELAD 227
K L LT+L++L I S+ V+ S+ + NL+SL A++N + P G LT L +
Sbjct: 166 KPLANLTTLERLDISSNKVSDISVLAKLTNLESL---IATNNQISDITP--LGILTNLDE 220
Query: 228 LRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKI 287
L L G L+ + +L L DL + + + S L L L+ L L ++S
Sbjct: 221 LSLNGNQLKDI--GTLASLTNLTDLDLAN--NQISNLAPLSGLTKLTELKLGANQISNIS 276
Query: 288 PDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPV 337
P L L L+L+ N+L P S +L L YL L NN+S PV
Sbjct: 277 P--LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISPV 322
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 9/160 (5%)
Query: 175 TSLQQLYIDSSGVTGSIPQEFANLKSLRIL-WASDNLFTGKIPEF--FGTLTELADLRLQ 231
TSL+ L + +GV ++ F L+ L L + NL ++ EF F +L L L +
Sbjct: 373 TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL--KQMSEFSVFLSLRNLIYLDIS 429
Query: 232 GTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTL-DFLESQKSLSILSLRNCRVSGKIPDQ 290
T F L+ LE L++ S +++ L D ++L+ L L C++ P
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489
Query: 291 LGTFAKLQLLDLSFNKLTGQIPTSLQD-LSTLQYLYLGNN 329
+ + LQ+L+++ N+L +P + D L++LQ ++L N
Sbjct: 490 FNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTN 528
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 174 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG-KIPEFFGTLTELADLRLQG 232
L+SLQ+L + + +LK+L+ L + NL K+PE+F LT L L L
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 233 TLLEGPIPRSFRALNKL 249
++ R L+++
Sbjct: 159 NKIQSIYCTDLRVLHQM 175
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 287 IPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNL 331
+PD L LDLS +L PT+ LS+LQ L + +N L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 65/166 (39%), Gaps = 38/166 (22%)
Query: 87 YALDI----MGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGR 142
+ALD+ + + + +F L L L N L +PAEI LSN++ L L N T
Sbjct: 227 HALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS- 284
Query: 143 VPTELGNLTKLISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLR 202
LP ELG L+ Y + VT ++P EF NL +L+
Sbjct: 285 ------------------------LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQ 319
Query: 203 ILWASDNLFTGKIPEFFGTLTELAD----LRLQGTLLEGPIPRSFR 244
L N +F LTE + L+ E P+P R
Sbjct: 320 FLGVEGNPLEK---QFLKILTEKSVTGLIFYLRDNRPEIPLPHERR 362
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 249 LEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLT 308
L +L+I ++SA DFL + L L ++ ++P ++ + L++LDLS N+LT
Sbjct: 231 LSNLQIFNISANIFKYDFL------TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283
Query: 309 GQIPTSLQDLSTLQYLYLGNN 329
+P L L+Y Y +N
Sbjct: 284 S-LPAELGSCFQLKYFYFFDN 303
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 173 KLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQG 232
K L +LY++ + +T +P E NL +LR+L S N T +P G+ +L
Sbjct: 245 KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFD 302
Query: 233 TLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLS--ILSLRNCRVSGKIPDQ 290
++ +P F L L+ L + E L L ++KS++ I LR+ R +P +
Sbjct: 303 NMVTT-LPWEFGNLCNLQFLGVEGNPLEKQFLKIL-TEKSVTGLIFYLRDNRPEIPLPHE 360
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 83/200 (41%), Gaps = 35/200 (17%)
Query: 169 KELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPE-FFGTLTELAD 227
K L LQ+LYI + + P ++L LRI DN K+P+ F L +
Sbjct: 96 KAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRI---HDNRIR-KVPKGVFSGLRNMNC 151
Query: 228 LRLQGTLLE--GPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSG 285
+ + G LE G P +F L KL LRI + D E+ L+ L L + ++
Sbjct: 152 IEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPET---LNELHLDHNKIQA 207
Query: 286 KIPDQLGTFAKLQLLDLSFNKLT-----------------------GQIPTSLQDLSTLQ 322
+ L ++KL L L N++ ++P L DL LQ
Sbjct: 208 IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQ 267
Query: 323 YLYLGNNNLSGELPVNIIAP 342
+YL NN++ ++ VN P
Sbjct: 268 VVYLHTNNIT-KVGVNDFCP 286
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 274 SILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSG 333
++L L+N +S D L L L NK++ + L LQ LY+ N+L
Sbjct: 57 TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV- 115
Query: 334 ELPVNIIAPNLIALDVSYNPLSGNLPRNFAKGGLSMNVI 372
E+P N+ + +L+ L + N + +P+ G +MN I
Sbjct: 116 EIPPNLPS-SLVELRIHDNRIR-KVPKGVFSGLRNMNCI 152
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 16/183 (8%)
Query: 170 ELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLR 229
+L +LQ L + SS + F +L SL L SDN + +FG L+ L L
Sbjct: 71 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 130
Query: 230 LQGTLLEGP-IPRSFRALNKLEDLRIGDLS--AEDSTLDF--LESQKSLSI--LSLRNCR 282
L G + + F L L+ LRIG++ +E +DF L S L I LSLRN +
Sbjct: 131 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 190
Query: 283 VSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLS----GELPVN 338
L + + L L ++ + LS+++YL L + NL+ LPV+
Sbjct: 191 -----SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVD 245
Query: 339 IIA 341
++
Sbjct: 246 EVS 248
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 82/211 (38%), Gaps = 19/211 (9%)
Query: 92 MGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLT 151
+ + P + F L L + L +P Q + ++ L+L N +P + +L
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAAGLX-ELPDTXQQFAGLETLTLARNPLRA-LPASIASLN 150
Query: 152 KLISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLF 211
+L L LP+ L D+SG Q NL+SLR+ W
Sbjct: 151 RLRELSIRACPELTELPEPLAS--------TDASGEH----QGLVNLQSLRLEWTG---- 194
Query: 212 TGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQK 271
+P L L L+++ + L P + L KLE+L + +A + +
Sbjct: 195 IRSLPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRA 253
Query: 272 SLSILSLRNCRVSGKIPDQLGTFAKLQLLDL 302
L L L++C +P + +L+ LDL
Sbjct: 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 16/183 (8%)
Query: 170 ELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLR 229
+L +LQ L + SS + F +L SL L SDN + +FG L+ L L
Sbjct: 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104
Query: 230 LQGTLLEGP-IPRSFRALNKLEDLRIGDLS--AEDSTLDF--LESQKSLSI--LSLRNCR 282
L G + + F L L+ LRIG++ +E +DF L S L I LSLRN +
Sbjct: 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 164
Query: 283 VSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLS----GELPVN 338
L + + L L ++ + LS+++YL L + NL+ LPV+
Sbjct: 165 -----SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVD 219
Query: 339 IIA 341
++
Sbjct: 220 EVS 222
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 6/113 (5%)
Query: 142 RVPTELGNLTKLISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSL 201
R PTE L ++ LPK + + + +LY+D + T +P+E +N K L
Sbjct: 3 RCPTECTCLDTVVRCSNKGLKV---LPKGIPR--DVTELYLDGNQFT-LVPKELSNYKHL 56
Query: 202 RILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRI 254
++ S+N + + F +T+L L L L PR+F L L L +
Sbjct: 57 TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 267 LESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYL 326
L + K L+++ L N R+S +L L LS+N+L P + L +L+ L L
Sbjct: 50 LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109
Query: 327 GNNNLS 332
N++S
Sbjct: 110 HGNDIS 115
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 69/165 (41%), Gaps = 9/165 (5%)
Query: 173 KLTSLQQLYIDSSGVT--GSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRL 230
KLT L +L + S+G++ G Q SL+ L S N F G L +L L
Sbjct: 50 KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDF 108
Query: 231 QGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDF---LESQKSLSILSLR-NCRVSGK 286
Q + L+ F L +L D+S + + F SL +L + N
Sbjct: 109 QHSNLKQM--SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166
Query: 287 IPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNL 331
+PD L LDLS +L PT+ LS+LQ L + +NN
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 82/195 (42%), Gaps = 16/195 (8%)
Query: 294 FAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNP 353
KL L+L +N+L DL+ L L L NN L+ LP+ + +L LD Y
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVF-DHLTQLDKLY-- 113
Query: 354 LSGNLPRNFAKGGLS--MNVIGSSINANNLQDGKA-----LGMMQCLHSNTKCSNKVPSS 406
L GN ++ G + +N N LQ A L +Q L +T VP
Sbjct: 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173
Query: 407 SFSIKCGGTQIASASGIEFD-DDSKTLEAASFYTSSGNRWAVSNTGNFISNPNGPLYIAQ 465
+F + G Q + G +FD +TL + + + N+ N +P+G +
Sbjct: 174 AFD-RLGKLQTITLFGNQFDCSRCETLYLSQWIRENSNKVKDGTGQNLHESPDG---VTC 229
Query: 466 TDSQITGTLDSELYK 480
+D ++ T+ +E K
Sbjct: 230 SDGKVVRTVTNETLK 244
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 80 HITHL-KIY-ALDIMGELPSELF-MLRKLMDLNLGQNVLNGSIPA-EIGQLSNMQYLSLG 135
H+T L K+Y + + LPS +F L KL +L L N L SIPA +L+N+Q LSL
Sbjct: 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLS 163
Query: 136 INNF 139
N
Sbjct: 164 TNQL 167
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 26/144 (18%)
Query: 195 FANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRI 254
F NL L++L S +L + F L L L LQG P+
Sbjct: 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG----NHFPK------------- 463
Query: 255 GDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTS 314
G++ +S L++ L IL L C +S + + +DLS N+LT +S
Sbjct: 464 GNIQKTNS----LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS---SS 516
Query: 315 LQDLSTLQ--YLYLGNNNLSGELP 336
++ LS L+ YL L +N++S LP
Sbjct: 517 IEALSHLKGIYLNLASNHISIILP 540
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 77/189 (40%), Gaps = 27/189 (14%)
Query: 168 PKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELAD 227
P L L++LY+ S +P++ K+L+ L +N T F L ++
Sbjct: 93 PGAFAPLVKLERLYL-SKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIV 149
Query: 228 LRLQGTLLE--GPIPRSFRALNKLEDLRIGDL-----------SAEDSTLD--------- 265
+ L L+ G +F+ + KL +RI D S + LD
Sbjct: 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDA 209
Query: 266 -FLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYL 324
L+ +L+ L L +S L L+ L L+ NKL ++P L D +Q +
Sbjct: 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV 268
Query: 325 YLGNNNLSG 333
YL NNN+S
Sbjct: 269 YLHNNNISA 277
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 77/189 (40%), Gaps = 27/189 (14%)
Query: 168 PKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELAD 227
P L L++LY+ S +P++ K+L+ L +N T F L ++
Sbjct: 93 PGAFAPLVKLERLYL-SKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIV 149
Query: 228 LRLQGTLLE--GPIPRSFRALNKLEDLRIGDL-----------SAEDSTLD--------- 265
+ L L+ G +F+ + KL +RI D S + LD
Sbjct: 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDA 209
Query: 266 -FLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYL 324
L+ +L+ L L +S L L+ L L+ NKL ++P L D +Q +
Sbjct: 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV 268
Query: 325 YLGNNNLSG 333
YL NNN+S
Sbjct: 269 YLHNNNISA 277
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 293 TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAP 342
T L +LD+SFN+LT +L+ L LQ LYL N L LP ++ P
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 293 TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAP 342
T L +LD+SFN+LT +L+ L LQ LYL N L LP ++ P
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 293 TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAP 342
T L +LD+SFN+LT +L+ L LQ LYL N L LP ++ P
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 293 TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAP 342
T L +LD+SFN+LT +L+ L LQ LYL N L LP ++ P
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 271 KSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNN 330
+S+ L L + +++ P L + LQ+L L N++T P L L+ LQYL +GNN
Sbjct: 113 QSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQ 168
Query: 331 LSGELPV 337
++ P+
Sbjct: 169 VNDLTPL 175
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 106 MDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLXXXXXXXXG 165
+DLN N+ + + L+N+QYLS+G N P L NL+KL +L
Sbjct: 142 LDLNQITNI------SPLAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKISD 193
Query: 166 PLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRIL 204
P L L +L ++++ + ++ P ANL +L I+
Sbjct: 194 ISP--LASLPNLIEVHLKDNQISDVSP--LANLSNLFIV 228
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 293 TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAP 342
T L +LD+SFN+LT +L+ L LQ LYL N L LP ++ P
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 293 TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAP 342
T L +LD+SFN+LT +L+ L LQ LYL N L LP ++ P
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 293 TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAP 342
T L +LD+SFN+LT +L+ L LQ LYL N L LP ++ P
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 293 TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAP 342
T L +LD+SFN+LT +L+ L LQ LYL N L LP ++ P
Sbjct: 99 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 147
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 293 TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAP 342
T L +LD+SFN+LT +L+ L LQ LYL N L LP ++ P
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 293 TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAP 342
T L +LD+SFN+LT +L+ L LQ LYL N L LP ++ P
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 81/195 (41%), Gaps = 16/195 (8%)
Query: 294 FAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNP 353
KL L+L +N+L DL+ L L L NN L+ LP+ + +L LD Y
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVF-DHLTQLDKLY-- 113
Query: 354 LSGNLPRNFAKGGLS--MNVIGSSINANNLQDGKA-----LGMMQCLHSNTKCSNKVPSS 406
L GN ++ G + +N N LQ A L +Q L +T VP
Sbjct: 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173
Query: 407 SFSIKCGGTQIASASGIEFD-DDSKTLEAASFYTSSGNRWAVSNTGNFISNPNGPLYIAQ 465
+F + G Q + G +FD + L + + + N+ N +P+G +
Sbjct: 174 AFD-RLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDG---VTC 229
Query: 466 TDSQITGTLDSELYK 480
+D ++ T+ +E K
Sbjct: 230 SDGKVVRTVTNETLK 244
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 80 HITHL-KIY-ALDIMGELPSELF-MLRKLMDLNLGQNVLNGSIPA-EIGQLSNMQYLSLG 135
H+T L K+Y + + LPS +F L KL +L L N L SIPA +L+N+Q LSL
Sbjct: 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLS 163
Query: 136 INNF 139
N
Sbjct: 164 TNQL 167
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 15/87 (17%)
Query: 259 AEDSTLDFLESQKSLSILSLRNCRVSGKI--------------PDQLGTFAKLQLLDLSF 304
AE+ T ++E+Q+ L L LR+ R G++ PD +L L+LSF
Sbjct: 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89
Query: 305 NKLTGQIPTSLQDLSTLQYLYLGNNNL 331
N L ++Q LS LQ L L N L
Sbjct: 90 NALESLSWKTVQGLS-LQELVLSGNPL 115
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 296 KLQLLDLSFNKL-TGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPL 354
K+Q++ + +N L T + TSLQ L L N L G+LP L +L+++YN +
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNLAYNQI 365
Query: 355 SGNLPRNFAKGGLSMNVIGSSINANNLQ 382
+ +P NF G + V S N L+
Sbjct: 366 T-EIPANFC--GFTEQVENLSFAHNKLK 390
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 12/100 (12%)
Query: 271 KSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNK-LTG-QIPTSLQDLS------TLQ 322
K L+ + + NC K+P L + QL++++ N+ ++G Q+ Q L+ +Q
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALPEXQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308
Query: 323 YLYLGNNNLSGELPVNI---IAPNLIALDVSYNPLSGNLP 359
+Y+G NNL PV L L+ YN L G LP
Sbjct: 309 IIYIGYNNLK-TFPVETSLQKXKKLGXLECLYNQLEGKLP 347
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 37/82 (45%)
Query: 173 KLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQG 232
+LTSL QLY+ + + F L SL L S N F LT+L +L L
Sbjct: 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109
Query: 233 TLLEGPIPRSFRALNKLEDLRI 254
L+ F L +L+DLR+
Sbjct: 110 NQLQSLPDGVFDKLTQLKDLRL 131
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 1/126 (0%)
Query: 92 MGELPSELF-MLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNL 150
+ LP+ +F L L L LG N L +L+++ YL+L N L
Sbjct: 40 LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKL 99
Query: 151 TKLISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNL 210
T+L L KLT L+ L + + + F L SL+ +W DN
Sbjct: 100 TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159
Query: 211 FTGKIP 216
+ P
Sbjct: 160 WDCTCP 165
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 280 NCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI 339
+CR G Q+L L N++T P L L+ LYLG+N L G LPV +
Sbjct: 25 DCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGV 83
Query: 340 I--APNLIALDVSYNPLS 355
L LD+ N L+
Sbjct: 84 FDSLTQLTVLDLGTNQLT 101
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 57/134 (42%), Gaps = 6/134 (4%)
Query: 123 IGQLSNMQYLSLGINNFTG-RVPTELGNLTKLISLXXXXXXXXGPLPKEL-GKLTSLQQL 180
I L N++YL+LG N EL NLT LI LP + KLT+L++L
Sbjct: 59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLI----LTGNQLQSLPNGVFDKLTNLKEL 114
Query: 181 YIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIP 240
+ + + F L +L L + N F LT L +L L L+
Sbjct: 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174
Query: 241 RSFRALNKLEDLRI 254
F L +L+DLR+
Sbjct: 175 GVFDKLTQLKDLRL 188
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 1/126 (0%)
Query: 92 MGELPSELF-MLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNL 150
+ LP+ +F L L +L L +N L +L+N+ YL+L N L
Sbjct: 97 LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL 156
Query: 151 TKLISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNL 210
T L L KLT L+ L + + + F L SL+ +W DN
Sbjct: 157 TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216
Query: 211 FTGKIP 216
+ P
Sbjct: 217 WDCTCP 222
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 18/192 (9%)
Query: 176 SLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLL 235
++Q+LY+ + + P F N+ L +L N + F +L L + L
Sbjct: 94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 153
Query: 236 EGPIPRSFRALNKLEDLRIGD--LSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGT 293
E +F+A L++L++ L+ D +L I SL + VS + L
Sbjct: 154 ERIEDDTFQATTSLQNLQLSSNRLTHVDLSL----------IPSLFHANVSYNLLSTLAI 203
Query: 294 FAKLQLLDLSFNKL-TGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYN 352
++ LD S N + + P +++ L L L +NNL+ + + P L+ +D+SYN
Sbjct: 204 PIAVEELDASHNSINVVRGPVNVE----LTILKLQHNNLTDTAWL-LNYPGLVEVDLSYN 258
Query: 353 PLSGNLPRNFAK 364
L + F K
Sbjct: 259 ELEKIMYHPFVK 270
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 271 KSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNN 330
+S+ L L + +++ P L + LQ+L L N++T P L L+ LQYL +GN
Sbjct: 107 QSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQ 162
Query: 331 LSGELPV 337
+S P+
Sbjct: 163 VSDLTPL 169
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 28/149 (18%)
Query: 207 SDNLFTGKIPEFFGTLTELADLRLQGTLLE-----GPIPRSFRALNKLE--------DLR 253
S+NL T + E G LTEL L LQ L+ + ++L +L+ D +
Sbjct: 332 SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391
Query: 254 IGDLSAEDSTLDFLESQKSLS------------ILSLRNCRVSGKIPDQLGTFAKLQLLD 301
GD S S L S L+ +L L + ++ IP Q+ LQ L+
Sbjct: 392 KGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS-IPKQVVKLEALQELN 450
Query: 302 LSFNKLTGQIPTSLQD-LSTLQYLYLGNN 329
++ N+L +P + D L++LQ ++L N
Sbjct: 451 VASNQLKS-VPDGIFDRLTSLQKIWLHTN 478
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 9/133 (6%)
Query: 112 QNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLXXXXXXXXGPLPKEL 171
QN+ S+PA I ++ Q L L N T P +L L L
Sbjct: 20 QNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVF 77
Query: 172 GKLTSLQQLYIDSSGVTGSIPQ-EFANLKSLRILWASDNLFTGKIPEFFGTLTELAD--- 227
KLT L QL ++ + + SIP+ F NLKSL ++ +N + + + +AD
Sbjct: 78 DKLTQLTQLDLNDNHL-KSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADHTS 136
Query: 228 --LRLQGTLLEGP 238
+R G + P
Sbjct: 137 IVMRWDGKAVNDP 149
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 13/161 (8%)
Query: 246 LNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFN 305
LN+++ + +L+A TL+ L Q + V G++ FAKL+ LDLS N
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIY------DVKGQV-----VFAKLKTLDLSSN 201
Query: 306 KLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLS-GNLPRNFAK 364
KL P Q + + ++ L NN L + NL D+ N G L F+K
Sbjct: 202 KLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260
Query: 365 GGLSMNVIGSSINANNLQDGKALGMMQCLHSNTKCSNKVPS 405
V ++ Q+ + + H C +P+
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301
>pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAO|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
Length = 499
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 297 LQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGEL---PVNIIAPNLIA 346
L+ + + N+ TG+IP + ++ + + Y+Y + L G+L PV I A L+A
Sbjct: 302 LETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLA 354
>pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase
pdb|1H6V|B Chain B, Mammalian Thioredoxin Reductase
pdb|1H6V|C Chain C, Mammalian Thioredoxin Reductase
pdb|1H6V|D Chain D, Mammalian Thioredoxin Reductase
pdb|1H6V|E Chain E, Mammalian Thioredoxin Reductase
pdb|1H6V|F Chain F, Mammalian Thioredoxin Reductase
Length = 499
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 297 LQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGEL---PVNIIAPNLIA 346
L+ + + N+ TG+IP + ++ + + Y+Y + L G+L PV I A L+A
Sbjct: 302 LETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLA 354
>pdb|3MY9|A Chain A, Crystal Structure Of A Muconate Cycloisomerase From
Azorhizobium Caulinodans
Length = 377
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 209 NLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSA----EDSTL 264
+FTG F L D+ L+ +L PI R + +++ + +G A E + L
Sbjct: 58 EVFTGTPEAAFSAL----DIYLRPLILGAPIKRVRELMARMDKMLVGHGEAKAAVEMALL 113
Query: 265 DFLESQKSLSILSLRNCRVSGKIP 288
D L LS+ L RV +IP
Sbjct: 114 DILGKATGLSVADLLGGRVRDRIP 137
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 174 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG-KIPEFFGTLTELADLRLQG 232
L+SLQ+L + + +LK+L+ L + NL K+PE+F LT L L L
Sbjct: 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182
Query: 233 TLLEGPIPRSFRALNKL 249
++ R L+++
Sbjct: 183 NKIQSIYCTDLRVLHQM 199
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 287 IPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNL 331
+PD L LDLS +L PT+ LS+LQ L + +NN
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 174 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG-KIPEFFGTLTELADLRLQG 232
L+SLQ+L + + +LK+L+ L + NL K+PE+F LT L L L
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 233 TLLEGPIPRSFRALNKL 249
++ R L+++
Sbjct: 159 NKIQSIYCTDLRVLHQM 175
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 287 IPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNL 331
+PD L LDLS +L PT+ LS+LQ L + +NN
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 174 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG-KIPEFFGTLTELADLRLQG 232
L+SLQ+L + + +LK+L+ L + NL K+PE+F LT L L L
Sbjct: 100 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 159
Query: 233 TLLEGPIPRSFRALNKL 249
++ R L+++
Sbjct: 160 NKIQSIYCTDLRVLHQM 176
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 174 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG-KIPEFFGTLTELADLRLQG 232
L+SLQ+L + + +LK+L+ L + NL K+PE+F LT L L L
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 233 TLLEGPIPRSFRALNKL 249
++ R L+++
Sbjct: 159 NKIQSIYCTDLRVLHQM 175
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 26/123 (21%)
Query: 193 QEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEG--PIP-----RSFRA 245
Q F NLK L + S N + P LT+L +L + L+ IP R F
Sbjct: 60 QFFTNLKELHL---SHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLD 114
Query: 246 LNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFN 305
N+L D D L K+L ILS+RN ++ + LG +KL++LDL N
Sbjct: 115 NNELRDT------------DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGN 160
Query: 306 KLT 308
++T
Sbjct: 161 EIT 163
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 174 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG-KIPEFFGTLTELADLRLQG 232
L+SLQ+L + + +LK+L+ L + NL K+PE+F LT L L L
Sbjct: 101 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 160
Query: 233 TLLEGPIPRSFRALNKL 249
++ R L+++
Sbjct: 161 NKIQSIYCTDLRVLHQM 177
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 174 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG-KIPEFFGTLTELADLRLQG 232
L+SLQ+L + + +LK+L+ L + NL K+PE+F LT L L L
Sbjct: 100 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 159
Query: 233 TLLEGPIPRSFRALNKL 249
++ R L+++
Sbjct: 160 NKIQSIYCTDLRVLHQM 176
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 72/177 (40%), Gaps = 16/177 (9%)
Query: 174 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGT 233
T LQ+L + ++ + G +P L L+ L S N F L L ++G
Sbjct: 274 FTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGN 332
Query: 234 LLEGPIPRSFRALNKLEDLRIGDLS-----AEDSTLDFLESQKSLSILSLRNCRVSGKIP 288
+ + L KL +L+ DLS A D L++ L L+L + G
Sbjct: 333 V--KKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQS 390
Query: 289 DQLGTFAKLQLLDLSFNKLTGQIPTS-LQDLSTLQYLYL-------GNNNLSGELPV 337
+L+LLDL+F +L P S Q+L LQ L L N +L LPV
Sbjct: 391 QAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPV 447
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 174 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG-KIPEFFGTLTELADLRLQG 232
L+SLQ+L + + +LK+L+ L + NL K+PE+F LT L L L
Sbjct: 101 LSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 160
Query: 233 TLLEGPIPRSFRALNKL 249
++ R L+++
Sbjct: 161 NKIQSIYCTDLRVLHQM 177
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 18/192 (9%)
Query: 176 SLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLL 235
++Q+LY+ + + P F N+ L +L N + F +L L + L
Sbjct: 100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 159
Query: 236 EGPIPRSFRALNKLEDLRIGD--LSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGT 293
E +F+A L++L++ L+ D +L I SL + VS + L
Sbjct: 160 ERIEDDTFQATTSLQNLQLSSNRLTHVDLSL----------IPSLFHANVSYNLLSTLAI 209
Query: 294 FAKLQLLDLSFNKL-TGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYN 352
++ LD S N + + P +++ L L L +NNL+ + + P L+ +D+SYN
Sbjct: 210 PIAVEELDASHNSINVVRGPVNVE----LTILKLQHNNLTDTAWL-LNYPGLVEVDLSYN 264
Query: 353 PLSGNLPRNFAK 364
L + F K
Sbjct: 265 ELEKIMYHPFVK 276
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 10/60 (16%)
Query: 300 LDLSFNKLTGQIPTSLQDLSTLQYLYLGNN-----NLSGELPVNIIAPNLIALDVSYNPL 354
+DLS+N+L + + L+ LY+ NN NL G+ P+ P L LD+S+N L
Sbjct: 259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ-PI----PTLKVLDLSHNHL 313
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 2/105 (1%)
Query: 126 LSNMQYLSLGINNFTGRVPTELGNLTKLISLXXXXXXXXGPLPKELGKLTSLQQLYIDSS 185
L N++YL+LG+ N +P L L +L L P LTSL++L++ +
Sbjct: 155 LVNLRYLNLGMCNLKD-IPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHA 212
Query: 186 GVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRL 230
V F +LKSL L S N + F L L + L
Sbjct: 213 QVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHL 257
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 13/161 (8%)
Query: 246 LNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFN 305
LN+++ + +L+A TL+ L Q + V G++ FAKL+ LDLS N
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIY------DVKGQV-----VFAKLKTLDLSSN 201
Query: 306 KLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLS-GNLPRNFAK 364
KL P Q + + ++ L NN L + NL D+ N G L F+K
Sbjct: 202 KLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260
Query: 365 GGLSMNVIGSSINANNLQDGKALGMMQCLHSNTKCSNKVPS 405
V ++ Q+ + + H C +P+
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 85/213 (39%), Gaps = 29/213 (13%)
Query: 170 ELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDN--------LFTG-------K 214
E L++L ++ + V+ P F NL +LR L N +FTG
Sbjct: 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110
Query: 215 IPE---------FFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLD 265
I E F L L L + L R+F LN LE L + + +
Sbjct: 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170
Query: 266 FLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLS-FNKLTGQIPTSLQDLSTLQYL 324
L L +L LR+ ++ +L++L++S + L P L L+ L L
Sbjct: 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSL 229
Query: 325 YLGNNNLSG--ELPVNIIAPNLIALDVSYNPLS 355
+ + NL+ L V + L L++SYNP+S
Sbjct: 230 SITHCNLTAVPYLAVRHLV-YLRFLNLSYNPIS 261
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 132 LSLGINNFTGRVPTELGNLTKLISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSI 191
L+L N TG V L K++ L +PK++ L +LQ+L + S+ +
Sbjct: 433 LNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMS---IPKDVTHLQALQELNVASNQLKSVP 489
Query: 192 PQEFANLKSLRILWASDNLFTGKIP 216
F L SL+ +W DN + P
Sbjct: 490 DGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 8/108 (7%)
Query: 126 LSNMQYLSLGINNFTGRVPTELGNLTKLISLXXXXXXXXG---PLPKELGKLTSLQQLYI 182
L N++YL+LG+ N ++ NLT L+ L P LTSL++L++
Sbjct: 155 LVNLRYLNLGMCNLK-----DIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWL 209
Query: 183 DSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRL 230
+ V F +LKSL L S N + F L L + L
Sbjct: 210 MHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHL 257
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 35/85 (41%)
Query: 171 LGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRL 230
G+L L +L + + +TG P F ++ L +N + F L +L L L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 231 QGTLLEGPIPRSFRALNKLEDLRIG 255
+ +P SF LN L L +
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLA 134
>pdb|2BE1|A Chain A, Structure Of The Compact Lumenal Domain Of Yeast Ire1
pdb|2BE1|B Chain B, Structure Of The Compact Lumenal Domain Of Yeast Ire1
Length = 339
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/135 (20%), Positives = 58/135 (42%), Gaps = 17/135 (12%)
Query: 452 NFISNPNGPLYIAQTDSQITGTLDSELYKTARISPSSLRYYGLGLENGKY---RIDLHFA 508
N + N +G I + + TG++ + +Y ++ + +G G +NG + +D
Sbjct: 99 NIVVNDSGK--IVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPE 156
Query: 509 E-ITMEDSLSWKGLGRRVFDVYIQGERVLRDLNIKKEAGGSKRALVKTFEANVTNTIIEI 567
E I +++ + +G+ +F+ L I G S T++ NV + + +
Sbjct: 157 EKIKLQECENMIVIGKTIFE-----------LGIHSYDGASYNVTYSTWQQNVLDVPLAL 205
Query: 568 HFFWAGKGTCCIPFQ 582
++ G C PF+
Sbjct: 206 QNTFSKDGMCIAPFR 220
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 74/323 (22%), Positives = 129/323 (39%), Gaps = 57/323 (17%)
Query: 223 TELADLRLQGTLLEGPIPRSFRALNKL-----EDLRIGDLSAEDSTLDFLESQKSLSILS 277
+ L L L ++ P F A+ +L ++++G E L+ + S+ LS
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL--ANTSIRNLS 228
Query: 278 LRNCRVSGKIPDQ-LG-TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGEL 335
L N ++S LG + L +LDLS+N L S L L+Y +L NN+
Sbjct: 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ--- 285
Query: 336 PVNIIAPNLIALDVSYNPLSGNLPRNFAKGGLSMNVIGSSINANNLQDGKALGMMQCLHS 395
++ + +L L +N NL R+F K +S+ + D + ++CL
Sbjct: 286 --HLFSHSLHGL---FNVRYLNLKRSFTKQSISLASLPKI-------DDFSFQWLKCLEH 333
Query: 396 NTKCSNKVPSSSFSIKCGGTQIASASGIEFDDDSKTLEAASFYTSSGNRWAVSNTGNFIS 455
N +P ++ G + K L ++ +TS R + T F+S
Sbjct: 334 LNMEDNDIPGIKSNMFTGLINL------------KYLSLSNSFTSL--RTLTNET--FVS 377
Query: 456 NPNGPLYIAQTDSQITGTLDSELYKTARISPSSLRYYGLGLENGKYRIDLHFAEITME-D 514
+ PL+I K ++I + + G LE +DL EI E
Sbjct: 378 LAHSPLHILNLTKN----------KISKIESDAFSWLG-HLE----VLDLGLNEIGQELT 422
Query: 515 SLSWKGLGRRVFDVYIQGERVLR 537
W+GL +F++Y+ + L+
Sbjct: 423 GQEWRGL-ENIFEIYLSYNKYLQ 444
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 75/323 (23%), Positives = 131/323 (40%), Gaps = 57/323 (17%)
Query: 223 TELADLRLQGTLLEGPIPRSFRALNKL-----EDLRIGDLSAEDSTLDFLESQKSLSILS 277
+ L L L ++ P F A+ +L ++++G E L+ + S+ LS
Sbjct: 181 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL--ANTSIRNLS 238
Query: 278 LRNCRVSGKIPDQ-LG-TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGEL 335
L N ++S LG + L +LDLS+N L S L L+Y +L NN+
Sbjct: 239 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ--- 295
Query: 336 PVNIIAPNLIALDVSYNPLSGNLPRNFAKGGLSMNVIGSSINANNLQDGKALGMMQCLHS 395
++ + +L L +N NL R+F K +S+ + D + ++CL
Sbjct: 296 --HLFSHSLHGL---FNVRYLNLKRSFTKQSISLASLPKI-------DDFSFQWLKCLEH 343
Query: 396 NTKCSNKVPSSSFSIKCGGTQIASASGIEFDDDSKTLEAASFYTSSGNRWAVSNTGNFIS 455
N +P ++ G + K L ++ +TS R + T F+S
Sbjct: 344 LNMEDNDIPGIKSNMFTGLINL------------KYLSLSNSFTSL--RTLTNET--FVS 387
Query: 456 NPNGPLYIAQTDSQITGTLDSELYKTARISPSSLRYYGLGLENGKYRIDLHFAEITME-D 514
+ PL+I L+ K ++I + + G LE +DL EI E
Sbjct: 388 LAHSPLHI----------LNLTKNKISKIESDAFSWLG-HLE----VLDLGLNEIGQELT 432
Query: 515 SLSWKGLGRRVFDVYIQGERVLR 537
W+GL +F++Y+ + L+
Sbjct: 433 GQEWRGL-ENIFEIYLSYNKYLQ 454
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 75/323 (23%), Positives = 131/323 (40%), Gaps = 57/323 (17%)
Query: 223 TELADLRLQGTLLEGPIPRSFRALNKL-----EDLRIGDLSAEDSTLDFLESQKSLSILS 277
+ L L L ++ P F A+ +L ++++G E L+ + S+ LS
Sbjct: 176 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL--ANTSIRNLS 233
Query: 278 LRNCRVSGKIPDQ-LG-TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGEL 335
L N ++S LG + L +LDLS+N L S L L+Y +L NN+
Sbjct: 234 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ--- 290
Query: 336 PVNIIAPNLIALDVSYNPLSGNLPRNFAKGGLSMNVIGSSINANNLQDGKALGMMQCLHS 395
++ + +L L +N NL R+F K +S+ + D + ++CL
Sbjct: 291 --HLFSHSLHGL---FNVRYLNLKRSFTKQSISLASLPKI-------DDFSFQWLKCLEH 338
Query: 396 NTKCSNKVPSSSFSIKCGGTQIASASGIEFDDDSKTLEAASFYTSSGNRWAVSNTGNFIS 455
N +P ++ G + K L ++ +TS R + T F+S
Sbjct: 339 LNMEDNDIPGIKSNMFTGLINL------------KYLSLSNSFTSL--RTLTNET--FVS 382
Query: 456 NPNGPLYIAQTDSQITGTLDSELYKTARISPSSLRYYGLGLENGKYRIDLHFAEITME-D 514
+ PL+I L+ K ++I + + G LE +DL EI E
Sbjct: 383 LAHSPLHI----------LNLTKNKISKIESDAFSWLG-HLE----VLDLGLNEIGQELT 427
Query: 515 SLSWKGLGRRVFDVYIQGERVLR 537
W+GL +F++Y+ + L+
Sbjct: 428 GQEWRGL-ENIFEIYLSYNKYLQ 449
>pdb|1GZ5|A Chain A, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|B Chain B, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|C Chain C, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|D Chain D, Trehalose-6-Phosphate Synthase. Otsa
Length = 456
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 171 LGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLT 223
LG L + L+ SG TG+ Q +K I WAS NL + E++ +
Sbjct: 28 LGALKAAGGLWFGWSGETGNEDQPLKKVKKGNITWASFNLSEQDLDEYYNQFS 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,390,510
Number of Sequences: 62578
Number of extensions: 780568
Number of successful extensions: 2403
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 2046
Number of HSP's gapped (non-prelim): 246
length of query: 657
length of database: 14,973,337
effective HSP length: 105
effective length of query: 552
effective length of database: 8,402,647
effective search space: 4638261144
effective search space used: 4638261144
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)