Query 006206
Match_columns 657
No_of_seqs 655 out of 5585
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 19:55:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006206.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006206hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.2E-38 4.8E-43 378.4 30.0 338 24-377 24-369 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.7E-35 5.8E-40 351.9 28.2 301 77-377 186-488 (968)
3 KOG4194 Membrane glycoprotein 99.9 1.8E-29 4E-34 259.5 1.9 287 77-364 123-438 (873)
4 KOG4194 Membrane glycoprotein 99.9 7.6E-29 1.7E-33 254.9 3.4 297 79-377 78-405 (873)
5 PF11721 Malectin: Di-glucose 99.9 1.5E-26 3.3E-31 216.3 6.4 169 407-592 2-174 (174)
6 KOG0444 Cytoskeletal regulator 99.9 6.5E-28 1.4E-32 249.3 -3.3 294 78-378 6-305 (1255)
7 KOG0444 Cytoskeletal regulator 99.9 5.5E-27 1.2E-31 242.5 -4.7 291 79-377 32-352 (1255)
8 KOG0472 Leucine-rich repeat pr 99.9 2E-24 4.3E-29 213.8 -9.2 288 78-377 67-401 (565)
9 KOG0618 Serine/threonine phosp 99.9 7.1E-23 1.5E-27 221.9 0.0 289 80-375 46-487 (1081)
10 PLN03210 Resistant to P. syrin 99.8 9.8E-20 2.1E-24 218.8 24.9 270 95-374 580-879 (1153)
11 KOG0472 Leucine-rich repeat pr 99.8 8.3E-24 1.8E-28 209.4 -9.8 263 81-355 47-310 (565)
12 PRK15387 E3 ubiquitin-protein 99.8 8.3E-20 1.8E-24 204.5 17.6 254 81-377 203-458 (788)
13 PLN03210 Resistant to P. syrin 99.8 2.9E-19 6.2E-24 214.8 23.5 288 79-377 532-859 (1153)
14 PRK15370 E3 ubiquitin-protein 99.8 3.7E-19 7.9E-24 200.6 20.6 321 22-377 56-428 (754)
15 KOG4237 Extracellular matrix p 99.8 2E-21 4.3E-26 192.5 -3.6 275 104-379 68-361 (498)
16 PRK15370 E3 ubiquitin-protein 99.8 5.5E-19 1.2E-23 199.2 14.7 245 80-355 179-428 (754)
17 PRK15387 E3 ubiquitin-protein 99.8 7.3E-19 1.6E-23 196.9 15.1 243 79-362 222-465 (788)
18 KOG0618 Serine/threonine phosp 99.8 5.7E-21 1.2E-25 207.3 -2.5 266 80-353 220-487 (1081)
19 cd00116 LRR_RI Leucine-rich re 99.8 2.4E-20 5.3E-25 194.5 1.0 272 83-354 2-319 (319)
20 KOG4237 Extracellular matrix p 99.8 3.5E-20 7.5E-25 183.7 -2.8 278 76-355 64-359 (498)
21 cd00116 LRR_RI Leucine-rich re 99.7 1.9E-18 4.1E-23 180.3 3.3 252 80-331 24-319 (319)
22 PLN03150 hypothetical protein; 99.7 5.9E-17 1.3E-21 182.1 14.8 111 473-598 249-363 (623)
23 KOG0617 Ras suppressor protein 99.7 1.5E-18 3.3E-23 153.3 -4.5 162 78-245 32-194 (264)
24 KOG0617 Ras suppressor protein 99.6 4E-18 8.8E-23 150.7 -4.8 155 99-258 29-184 (264)
25 PF12819 Malectin_like: Carboh 99.6 3.2E-15 7E-20 155.9 11.9 110 473-597 231-347 (347)
26 PLN03150 hypothetical protein; 99.6 6.9E-15 1.5E-19 165.5 14.6 158 22-188 365-528 (623)
27 COG4886 Leucine-rich repeat (L 99.2 1.1E-11 2.5E-16 133.2 7.0 200 107-315 97-297 (394)
28 KOG1909 Ran GTPase-activating 99.2 3.6E-12 7.8E-17 125.8 1.4 246 99-355 26-311 (382)
29 COG4886 Leucine-rich repeat (L 99.2 2.3E-11 4.9E-16 130.9 7.6 198 130-336 96-294 (394)
30 KOG0532 Leucine-rich repeat (L 99.2 7.5E-13 1.6E-17 137.7 -4.0 172 81-261 77-248 (722)
31 KOG0532 Leucine-rich repeat (L 99.2 1.3E-12 2.9E-17 135.9 -3.6 174 126-308 74-247 (722)
32 KOG3207 Beta-tubulin folding c 99.1 7.8E-12 1.7E-16 126.6 0.3 208 124-356 118-340 (505)
33 KOG1909 Ran GTPase-activating 99.1 1.5E-11 3.3E-16 121.4 0.7 233 79-331 30-310 (382)
34 KOG3207 Beta-tubulin folding c 99.1 2E-11 4.3E-16 123.7 1.4 180 174-355 120-314 (505)
35 KOG1259 Nischarin, modulator o 99.0 1.1E-10 2.4E-15 112.6 1.6 133 220-358 281-415 (490)
36 KOG4658 Apoptotic ATPase [Sign 99.0 3.4E-10 7.3E-15 130.5 5.7 106 103-209 545-652 (889)
37 KOG1259 Nischarin, modulator o 98.9 2E-10 4.4E-15 110.9 1.1 221 78-309 181-413 (490)
38 PF12819 Malectin_like: Carboh 98.9 1.2E-08 2.5E-13 106.8 12.8 112 474-600 46-164 (347)
39 PF14580 LRR_9: Leucine-rich r 98.9 8.6E-10 1.9E-14 102.5 3.7 107 101-212 17-126 (175)
40 KOG0531 Protein phosphatase 1, 98.9 2.2E-10 4.8E-15 123.5 -1.8 244 101-358 70-321 (414)
41 KOG4658 Apoptotic ATPase [Sign 98.9 1.7E-09 3.6E-14 124.8 4.8 252 101-358 521-786 (889)
42 PF14580 LRR_9: Leucine-rich r 98.8 3.4E-09 7.4E-14 98.5 5.4 83 149-236 17-101 (175)
43 KOG0531 Protein phosphatase 1, 98.7 8.1E-10 1.7E-14 119.2 -2.6 238 104-355 50-290 (414)
44 PF13855 LRR_8: Leucine rich r 98.6 2.4E-08 5.1E-13 76.2 3.2 61 271-331 1-61 (61)
45 PF13855 LRR_8: Leucine rich r 98.6 2.3E-08 4.9E-13 76.3 2.3 59 104-162 2-60 (61)
46 KOG3593 Predicted receptor-lik 98.6 5.3E-08 1.2E-12 93.1 4.1 116 407-552 61-179 (355)
47 KOG2982 Uncharacterized conser 98.5 2.9E-08 6.3E-13 96.2 0.6 83 127-209 71-156 (418)
48 KOG2120 SCF ubiquitin ligase, 98.4 1.1E-08 2.3E-13 99.2 -4.6 176 152-329 186-373 (419)
49 KOG2120 SCF ubiquitin ligase, 98.3 2.1E-08 4.6E-13 97.2 -4.1 175 176-352 186-373 (419)
50 COG5238 RNA1 Ran GTPase-activa 98.3 1.6E-07 3.5E-12 90.0 1.3 186 99-284 26-255 (388)
51 KOG1859 Leucine-rich repeat pr 98.2 3.7E-08 8E-13 105.9 -5.5 195 150-355 83-292 (1096)
52 COG5238 RNA1 Ran GTPase-activa 98.2 5E-07 1.1E-11 86.7 1.3 206 80-285 31-286 (388)
53 KOG1859 Leucine-rich repeat pr 98.2 4.9E-08 1.1E-12 105.0 -6.2 179 96-284 102-292 (1096)
54 KOG2982 Uncharacterized conser 98.1 4.8E-07 1E-11 87.9 0.4 63 294-356 198-263 (418)
55 KOG4579 Leucine-rich repeat (L 98.0 3.7E-07 7.9E-12 78.9 -2.6 110 247-359 53-163 (177)
56 PRK15386 type III secretion pr 97.9 4.3E-05 9.4E-10 79.9 8.5 57 123-185 48-104 (426)
57 KOG4579 Leucine-rich repeat (L 97.8 9.9E-07 2.1E-11 76.2 -3.5 103 82-188 30-136 (177)
58 PRK15386 type III secretion pr 97.7 0.00022 4.9E-09 74.6 10.7 55 149-209 50-104 (426)
59 PF12799 LRR_4: Leucine Rich r 97.7 6.3E-05 1.4E-09 52.7 4.0 36 296-332 2-37 (44)
60 PF12799 LRR_4: Leucine Rich r 97.6 5.5E-05 1.2E-09 53.0 3.6 36 104-140 2-37 (44)
61 KOG1644 U2-associated snRNP A' 97.6 0.00013 2.9E-09 67.6 5.8 86 147-232 60-149 (233)
62 KOG3665 ZYG-1-like serine/thre 97.4 8.5E-05 1.8E-09 84.2 2.4 134 127-262 122-265 (699)
63 KOG1644 U2-associated snRNP A' 97.3 0.00033 7.2E-09 65.0 5.1 106 103-210 42-151 (233)
64 KOG3665 ZYG-1-like serine/thre 97.3 0.00016 3.5E-09 82.0 3.6 79 152-232 123-204 (699)
65 KOG2739 Leucine-rich acidic nu 97.2 0.00017 3.6E-09 69.8 1.7 67 95-163 35-103 (260)
66 KOG2739 Leucine-rich acidic nu 97.1 0.00025 5.3E-09 68.6 1.9 88 119-210 35-127 (260)
67 PF13306 LRR_5: Leucine rich r 96.9 0.0021 4.5E-08 56.9 6.2 104 99-207 8-111 (129)
68 PF13306 LRR_5: Leucine rich r 96.8 0.0029 6.3E-08 55.9 6.2 84 122-208 7-90 (129)
69 PF08263 LRRNT_2: Leucine rich 96.6 0.0031 6.7E-08 43.9 4.0 37 27-73 1-43 (43)
70 KOG4341 F-box protein containi 96.3 0.00029 6.3E-09 72.2 -4.0 239 66-306 124-383 (483)
71 PF08693 SKG6: Transmembrane a 96.2 0.0092 2E-07 39.9 4.1 29 611-639 11-39 (40)
72 PF04478 Mid2: Mid2 like cell 95.9 0.0079 1.7E-07 53.2 3.8 29 609-637 46-74 (154)
73 KOG4341 F-box protein containi 95.9 0.00059 1.3E-08 70.0 -4.0 253 76-330 161-437 (483)
74 KOG2123 Uncharacterized conser 95.7 0.00052 1.1E-08 66.7 -4.8 79 149-229 39-123 (388)
75 KOG2123 Uncharacterized conser 95.7 0.00072 1.6E-08 65.7 -4.0 79 221-301 39-123 (388)
76 KOG1947 Leucine rich repeat pr 95.7 0.0018 3.9E-08 71.4 -1.7 15 292-306 359-373 (482)
77 PTZ00382 Variant-specific surf 95.5 0.017 3.7E-07 47.9 3.9 24 609-632 63-86 (96)
78 KOG1947 Leucine rich repeat pr 95.4 0.0025 5.5E-08 70.2 -1.5 17 267-283 358-374 (482)
79 KOG4308 LRR-containing protein 94.5 0.00051 1.1E-08 74.6 -9.9 36 129-164 89-128 (478)
80 KOG4308 LRR-containing protein 94.4 0.00061 1.3E-08 74.0 -9.7 85 151-235 87-184 (478)
81 PF00560 LRR_1: Leucine Rich R 94.2 0.017 3.7E-07 33.6 0.5 18 129-147 2-19 (22)
82 PF06697 DUF1191: Protein of u 94.2 0.26 5.6E-06 48.8 8.8 16 525-540 128-143 (278)
83 PF00560 LRR_1: Leucine Rich R 93.8 0.025 5.5E-07 32.9 0.7 17 297-314 2-18 (22)
84 PF01102 Glycophorin_A: Glycop 92.9 0.016 3.5E-07 49.9 -1.6 33 610-642 62-94 (122)
85 KOG0473 Leucine-rich repeat pr 92.2 0.0023 5.1E-08 60.7 -8.2 85 99-186 38-122 (326)
86 KOG0473 Leucine-rich repeat pr 90.0 0.0075 1.6E-07 57.4 -7.2 88 122-212 37-124 (326)
87 PF01034 Syndecan: Syndecan do 89.6 0.12 2.5E-06 38.5 0.3 11 613-623 10-20 (64)
88 PF13504 LRR_7: Leucine rich r 89.3 0.25 5.5E-06 26.6 1.4 10 297-306 3-12 (17)
89 PHA03265 envelope glycoprotein 85.6 0.55 1.2E-05 47.3 2.4 21 626-646 362-382 (402)
90 KOG3864 Uncharacterized conser 85.5 0.21 4.5E-06 47.0 -0.5 32 295-326 151-183 (221)
91 PF02439 Adeno_E3_CR2: Adenovi 85.0 0.37 8E-06 31.8 0.6 21 614-634 5-25 (38)
92 KOG3864 Uncharacterized conser 84.6 0.13 2.8E-06 48.2 -2.3 82 224-305 102-186 (221)
93 PF08374 Protocadherin: Protoc 82.4 1.7 3.6E-05 41.1 4.0 25 609-633 35-59 (221)
94 PF03302 VSP: Giardia variant- 82.1 1.5 3.2E-05 47.0 4.0 26 608-633 363-388 (397)
95 PF02480 Herpes_gE: Alphaherpe 81.2 1.4 3E-05 47.6 3.4 25 505-535 271-295 (439)
96 PF01034 Syndecan: Syndecan do 81.1 0.49 1.1E-05 35.3 0.0 15 610-624 11-25 (64)
97 smart00369 LRR_TYP Leucine-ric 78.5 1.8 3.8E-05 26.1 1.9 13 152-164 3-15 (26)
98 smart00370 LRR Leucine-rich re 78.5 1.8 3.8E-05 26.1 1.9 13 152-164 3-15 (26)
99 smart00369 LRR_TYP Leucine-ric 78.3 2 4.2E-05 25.9 2.1 14 295-308 2-15 (26)
100 smart00370 LRR Leucine-rich re 78.3 2 4.2E-05 25.9 2.1 14 295-308 2-15 (26)
101 PF13516 LRR_6: Leucine Rich r 74.0 0.56 1.2E-05 27.7 -1.2 12 296-307 3-14 (24)
102 PF03229 Alpha_GJ: Alphavirus 73.7 2 4.4E-05 36.0 1.6 29 610-638 81-109 (126)
103 PF12768 Rax2: Cortical protei 71.9 23 0.00051 35.8 9.1 13 528-540 164-176 (281)
104 PF05808 Podoplanin: Podoplani 70.0 1.4 3.1E-05 39.6 0.0 29 610-638 127-155 (162)
105 PF12877 DUF3827: Domain of un 68.0 4.9 0.00011 44.3 3.4 40 492-535 181-221 (684)
106 PF14991 MLANA: Protein melan- 67.5 1.4 3.1E-05 36.9 -0.5 24 618-641 26-51 (118)
107 PF12191 stn_TNFRSF12A: Tumour 65.5 2.2 4.8E-05 36.6 0.2 26 618-643 84-109 (129)
108 PF15102 TMEM154: TMEM154 prot 64.8 7.9 0.00017 34.4 3.5 14 614-627 58-71 (146)
109 PF02439 Adeno_E3_CR2: Adenovi 63.6 1.6 3.4E-05 28.9 -0.7 21 610-631 5-25 (38)
110 PF01299 Lamp: Lysosome-associ 62.1 2.7 5.8E-05 43.4 0.1 27 613-639 271-298 (306)
111 PF13908 Shisa: Wnt and FGF in 62.1 5.9 0.00013 37.2 2.4 13 611-623 78-90 (179)
112 smart00364 LRR_BAC Leucine-ric 61.6 5.7 0.00012 24.1 1.4 13 320-332 3-15 (26)
113 KOG4242 Predicted myosin-I-bin 60.7 32 0.00069 36.9 7.6 67 77-145 163-232 (553)
114 PF08693 SKG6: Transmembrane a 60.4 9 0.0002 25.9 2.3 32 611-642 7-39 (40)
115 smart00368 LRR_RI Leucine rich 56.3 8.4 0.00018 23.7 1.6 14 342-355 2-15 (28)
116 PF15069 FAM163: FAM163 family 55.7 10 0.00023 33.4 2.7 24 611-634 5-28 (143)
117 PF05454 DAG1: Dystroglycan (D 54.2 4.2 9.1E-05 41.0 0.0 30 613-643 149-178 (290)
118 smart00365 LRR_SD22 Leucine-ri 53.8 11 0.00025 22.8 1.8 14 319-332 2-15 (26)
119 KOG3763 mRNA export factor TAP 53.5 6.6 0.00014 42.7 1.3 10 552-561 472-481 (585)
120 TIGR01478 STEVOR variant surfa 47.7 6.7 0.00015 38.8 0.3 13 634-646 280-292 (295)
121 PF14610 DUF4448: Protein of u 47.7 36 0.00077 32.2 5.2 15 627-641 172-186 (189)
122 KOG4242 Predicted myosin-I-bin 45.9 28 0.00061 37.3 4.4 16 342-357 354-369 (553)
123 PF07204 Orthoreo_P10: Orthore 45.8 12 0.00026 30.3 1.3 9 620-628 49-57 (98)
124 PF04478 Mid2: Mid2 like cell 45.4 9.6 0.00021 34.2 0.8 32 607-639 48-79 (154)
125 PF15345 TMEM51: Transmembrane 44.8 24 0.00052 34.0 3.4 26 610-635 56-81 (233)
126 KOG3763 mRNA export factor TAP 44.6 16 0.00035 39.9 2.5 14 272-285 271-284 (585)
127 PF05393 Hum_adeno_E3A: Human 43.3 13 0.00028 29.7 1.2 6 619-624 37-42 (94)
128 PTZ00370 STEVOR; Provisional 42.8 7.5 0.00016 38.6 -0.2 13 634-646 276-288 (296)
129 PF07213 DAP10: DAP10 membrane 41.7 6.9 0.00015 30.7 -0.5 25 610-634 32-56 (79)
130 PF06365 CD34_antigen: CD34/Po 41.2 35 0.00075 32.5 3.9 29 611-639 99-128 (202)
131 PF13908 Shisa: Wnt and FGF in 40.9 22 0.00048 33.3 2.6 21 611-631 74-94 (179)
132 PF02009 Rifin_STEVOR: Rifin/s 37.7 6.3 0.00014 40.1 -1.7 7 635-641 279-285 (299)
133 PF10873 DUF2668: Protein of u 36.3 40 0.00086 29.8 3.2 17 612-628 61-77 (155)
134 PF12669 P12: Virus attachment 36.0 30 0.00065 25.7 2.1 7 618-624 3-9 (58)
135 PF08114 PMP1_2: ATPase proteo 31.2 30 0.00065 23.3 1.2 6 639-644 36-41 (43)
136 PF15176 LRR19-TM: Leucine-ric 30.2 15 0.00033 30.2 -0.3 16 609-624 15-30 (102)
137 TIGR03778 VPDSG_CTERM VPDSG-CT 29.7 53 0.0011 20.0 2.0 14 626-639 11-24 (26)
138 PRK10299 PhoPQ regulatory prot 29.4 31 0.00067 24.0 1.1 16 1-16 1-16 (47)
139 PF05083 LST1: LST-1 protein; 28.0 41 0.00089 25.6 1.7 21 623-643 6-26 (74)
140 PF10389 CoatB: Bacteriophage 27.1 46 0.001 23.3 1.7 20 619-638 25-44 (46)
141 PF07172 GRP: Glycine rich pro 27.1 54 0.0012 27.1 2.4 13 1-14 1-13 (95)
142 PF06809 NPDC1: Neural prolife 26.4 52 0.0011 33.3 2.5 20 619-638 205-224 (341)
143 PF04689 S1FA: DNA binding pro 26.2 71 0.0015 23.9 2.6 22 610-631 11-32 (69)
144 PF15117 UPF0697: Uncharacteri 22.8 54 0.0012 26.1 1.5 19 632-650 31-49 (99)
145 PTZ00382 Variant-specific surf 22.3 49 0.0011 27.4 1.3 22 611-633 69-90 (96)
146 KOG1024 Receptor-like protein 21.5 1E+02 0.0023 32.5 3.7 55 522-576 18-76 (563)
147 PF15102 TMEM154: TMEM154 prot 21.4 30 0.00065 30.9 -0.1 22 611-633 59-80 (146)
148 PF02480 Herpes_gE: Alphaherpe 21.2 32 0.00069 37.3 0.0 12 498-509 281-292 (439)
149 PF03422 CBM_6: Carbohydrate b 21.1 5.2E+02 0.011 21.9 9.8 67 492-569 36-106 (125)
150 PF08400 phage_tail_N: Prophag 20.5 57 0.0012 28.9 1.4 20 488-507 45-64 (134)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.2e-38 Score=378.36 Aligned_cols=338 Identities=31% Similarity=0.521 Sum_probs=257.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCC----CCCCCCCCCCCCCCCCCCCCCCCCCeeeecCCCCCceeEEEEecCCCCccCChhc
Q 006206 24 TSTDSAEVDALNKLIDYWNLR----SKINLTTIDPCTRNASWASENANPRVACDCTSNSCHITHLKIYALDIMGELPSEL 99 (657)
Q Consensus 24 ~~~~~~e~~aL~~~~~~~~~~----~~w~~~~~d~C~~~~~W~~~~~~~~v~C~~~~~~~~v~~L~l~~~~l~~~lp~~l 99 (657)
+..+++|.+||..|++.+..+ ..|+.. .|||. | .|+.|+ ...+|+.|+++++++.+.++..+
T Consensus 24 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~-~~~c~----w------~gv~c~---~~~~v~~L~L~~~~i~~~~~~~~ 89 (968)
T PLN00113 24 SMLHAEELELLLSFKSSINDPLKYLSNWNSS-ADVCL----W------QGITCN---NSSRVVSIDLSGKNISGKISSAI 89 (968)
T ss_pred cCCCHHHHHHHHHHHHhCCCCcccCCCCCCC-CCCCc----C------cceecC---CCCcEEEEEecCCCccccCChHH
Confidence 344778999999999998643 568765 78997 8 699997 24589999999999999999999
Q ss_pred cCCCCCCEEEccCCCCCCCCchhcC-CCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCC
Q 006206 100 FMLRKLMDLNLGQNVLNGSIPAEIG-QLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQ 178 (657)
Q Consensus 100 ~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 178 (657)
..+++|+.|+|++|.+.+.+|..+. .+++|++|+|++|++++.+|. +.+++|++|+|++|.+.+.+|..++++++|+
T Consensus 90 ~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 167 (968)
T PLN00113 90 FRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLK 167 (968)
T ss_pred hCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCC
Confidence 9999999999999999988887654 888899999998888877765 4577788888888877777777777777888
Q ss_pred eeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCC
Q 006206 179 QLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLS 258 (657)
Q Consensus 179 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (657)
+|+|++|.+.+.+|..+.++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|.
T Consensus 168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence 88888777777777777777777888877777777777777777777777777777777777777777777777777777
Q ss_pred CCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcCCCCCCcc
Q 006206 259 AEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVN 338 (657)
Q Consensus 259 ~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 338 (657)
+....+..+..+++|++|+|++|.+.+.+|..+..+++|+.|+|++|++.+.+|..+..+++|+.|++++|.+++.+|..
T Consensus 248 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~ 327 (968)
T PLN00113 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327 (968)
T ss_pred eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh
Confidence 66666666777777777777777777777777777777777777777777677776777777777777777777666644
Q ss_pred c-cCCCCceEecccccCCCCCCccccC-CCcE-EEeecCCcC
Q 006206 339 I-IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSIN 377 (657)
Q Consensus 339 ~-~~~~L~~LdLs~N~l~g~~p~~~~~-~~l~-~~l~~n~~~ 377 (657)
+ .+++|+.|+|++|.+++.+|..+.. ..|+ +++++|++.
T Consensus 328 ~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 328 LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369 (968)
T ss_pred HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeE
Confidence 4 3566777777777776666655554 4443 566666553
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.7e-35 Score=351.87 Aligned_cols=301 Identities=31% Similarity=0.488 Sum_probs=280.0
Q ss_pred CCCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEE
Q 006206 77 NSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISL 156 (657)
Q Consensus 77 ~~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 156 (657)
...+++.|++++|.+.+.+|..+.++++|++|+|++|.+++.+|..++++++|++|+|++|.+++.+|..|+++++|++|
T Consensus 186 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 265 (968)
T PLN00113 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYL 265 (968)
T ss_pred hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCC
Q 006206 157 SFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLE 236 (657)
Q Consensus 157 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 236 (657)
+|++|.+.+.+|..+.++++|++|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.
T Consensus 266 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 345 (968)
T PLN00113 266 FLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS 345 (968)
T ss_pred ECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhcc
Q 006206 237 GPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQ 316 (657)
Q Consensus 237 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 316 (657)
+.+|..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+.
T Consensus 346 ~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~ 425 (968)
T PLN00113 346 GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT 425 (968)
T ss_pred CcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh
Confidence 99999999999999999999998877788888889999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEccCCcCCCCCCccc-cCCCCceEecccccCCCCCCccccCCCcE-EEeecCCcC
Q 006206 317 DLSTLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFAKGGLS-MNVIGSSIN 377 (657)
Q Consensus 317 ~l~~L~~L~L~~N~l~~~~p~~~-~~~~L~~LdLs~N~l~g~~p~~~~~~~l~-~~l~~n~~~ 377 (657)
.++.|+.|++++|.+++.+|... .+++|+.|+|++|++.+.+|..+....++ +++++|++.
T Consensus 426 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~ 488 (968)
T PLN00113 426 KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFS 488 (968)
T ss_pred cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccC
Confidence 99999999999999998888644 57899999999999999998766555565 888888875
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=1.8e-29 Score=259.47 Aligned_cols=287 Identities=21% Similarity=0.227 Sum_probs=189.4
Q ss_pred CCCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEE
Q 006206 77 NSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISL 156 (657)
Q Consensus 77 ~~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 156 (657)
..+|++.|+|.+|.++..-..++..++.|+.||||.|.++..--.+|..-.++++|+|++|+|+..-...|.++.+|..|
T Consensus 123 ~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl 202 (873)
T KOG4194|consen 123 ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL 202 (873)
T ss_pred cccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheee
Confidence 35678888888888877767778888888888888888874333456665678888888888887777788888888888
Q ss_pred EeecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCC------------------------CCcEEEccCCcCC
Q 006206 157 SFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLK------------------------SLRILWASDNLFT 212 (657)
Q Consensus 157 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~------------------------~L~~L~Ls~n~l~ 212 (657)
.|++|.++...+..|.+|++|+.|+|..|++...--..|..++ ++++|+|..|+++
T Consensus 203 kLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~ 282 (873)
T KOG4194|consen 203 KLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ 282 (873)
T ss_pred ecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh
Confidence 8888888866666777788888888888876533233344444 4455555555555
Q ss_pred CCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCccccc
Q 006206 213 GKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLG 292 (657)
Q Consensus 213 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~ 292 (657)
..-..++.++++|+.|+++.|.+...-++.+...++|++|+|+.|.++......|..+..|++|+|++|++...-...|.
T Consensus 283 ~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~ 362 (873)
T KOG4194|consen 283 AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV 362 (873)
T ss_pred hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH
Confidence 44445555566666666666666555555666666666666666666666666666666666666666666544444555
Q ss_pred CCCCCcEEeccCCCCCCCCch---hccCCCCCcEEEccCCcCCCCCCccc--cCCCCceEecccccCCCCCCccccC
Q 006206 293 TFAKLQLLDLSFNKLTGQIPT---SLQDLSTLQYLYLGNNNLSGELPVNI--IAPNLIALDVSYNPLSGNLPRNFAK 364 (657)
Q Consensus 293 ~l~~L~~L~Ls~n~l~~~~p~---~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~~L~~LdLs~N~l~g~~p~~~~~ 364 (657)
.+++|+.|||++|.|+..+-+ .|..+++|+.|+|.+|++. .||... .++.|++|||.+|.+-..-|+.|.+
T Consensus 363 ~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~ 438 (873)
T KOG4194|consen 363 GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEP 438 (873)
T ss_pred HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcceeeccccccc
Confidence 666666666666666544322 3555666666666666666 444322 3566666666666666555555544
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=7.6e-29 Score=254.94 Aligned_cols=297 Identities=24% Similarity=0.230 Sum_probs=208.5
Q ss_pred CceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEe
Q 006206 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 158 (657)
Q Consensus 79 ~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 158 (657)
..++.|++++|.+...-+..|.++++|+++++..|.++ .+|...+...+|+.|+|.+|.|+..-...+..++.|+.|||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 35677889888888777778888899999998888887 77876666777888888888888666677778888888888
Q ss_pred ecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCC
Q 006206 159 SSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGP 238 (657)
Q Consensus 159 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 238 (657)
+.|.++.+.-+.|..-.++++|+|++|.++..-...|..+.+|..|.|+.|+++...+..|.++++|+.|+|..|++.-.
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 88888755555666667888888888888876677788888888888888888866667777788888888888877533
Q ss_pred chhhccCCCCCCeEEcCCCC------------------------CCCCChhhhhcCCCCCEEEccCcccccCCcccccCC
Q 006206 239 IPRSFRALNKLEDLRIGDLS------------------------AEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTF 294 (657)
Q Consensus 239 ~~~~l~~l~~L~~L~l~~~~------------------------~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l 294 (657)
.--.|..+++|+.|.|..|. +......++-+++.|+.|+||.|.+...-++.+.-.
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 33345555555555554444 444444455555566666666666655555555555
Q ss_pred CCCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcCCCCCCcc-c-cCCCCceEecccccCCCCCCcc---ccC-CCcE
Q 006206 295 AKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVN-I-IAPNLIALDVSYNPLSGNLPRN---FAK-GGLS 368 (657)
Q Consensus 295 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~-~~~~L~~LdLs~N~l~g~~p~~---~~~-~~l~ 368 (657)
++|+.|+|++|+|+...+.+|..+..|+.|+|++|.++. +.+. + .+++|++|||++|.|++.|-+. |.. +.|+
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~-l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lr 395 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH-LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLR 395 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcccccchHH-HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhh
Confidence 666666666666665555566666666666666666652 2221 2 3588899999999998777543 222 4444
Q ss_pred -EEeecCCcC
Q 006206 369 -MNVIGSSIN 377 (657)
Q Consensus 369 -~~l~~n~~~ 377 (657)
+.+.+|++.
T Consensus 396 kL~l~gNqlk 405 (873)
T KOG4194|consen 396 KLRLTGNQLK 405 (873)
T ss_pred heeecCceee
Confidence 788888876
No 5
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.93 E-value=1.5e-26 Score=216.30 Aligned_cols=169 Identities=44% Similarity=0.782 Sum_probs=111.6
Q ss_pred ccccccCCcccccCCCccccCCCCCCCcee-EEeecCCceEeeecccccCCCCCCcceeeeccccccCCChhhhhhcccc
Q 006206 407 SFSIKCGGTQIASASGIEFDDDSKTLEAAS-FYTSSGNRWAVSNTGNFISNPNGPLYIAQTDSQITGTLDSELYKTARIS 485 (657)
Q Consensus 407 ~~~inCgg~~~~~~~~~~~~~d~~~~g~~~-~~~s~~~~w~~s~~g~~~~~~~~~~~~~~~~~~~~~~~p~~ly~t~r~~ 485 (657)
.++|||||+...+..+..|+.|....+..+ |+.+ ... ..+.......+.++.+++||||+|++
T Consensus 2 ~~~IN~Gg~~~~~~~g~~w~~D~~~~~g~~~y~~~---------------~~~-~~~~~~~~~~i~~t~d~~Lyqt~R~g 65 (174)
T PF11721_consen 2 VLRINAGGPAYTDSSGIVWEADQYYTGGSWGYYVS---------------SDN-NGSTSSTNSSIPGTTDDPLYQTERYG 65 (174)
T ss_dssp EEEEEETSSSEEETTTEEE-SSSSSTTSS---------------------------SSTTS--TTS-HHHHHTTT-----
T ss_pred EEEEECCCCcccCCCCCEEcCCCCCCCCCcccccc---------------ccc-ccccccccccccCCCchhhhHhhcCC
Confidence 467999999975667899998875433221 2221 000 00111234467778899999999999
Q ss_pred CCccccccCC-CCCceEEEEEeeeeeeecCCcCcccccceEEEEEECCEEecccCchhhhcCCCCceEEEEE-EEEeeCC
Q 006206 486 PSSLRYYGLG-LENGKYRIDLHFAEITMEDSLSWKGLGRRVFDVYIQGERVLRDLNIKKEAGGSKRALVKTF-EANVTNT 563 (657)
Q Consensus 486 ~~~l~~~~~~-v~~g~y~v~lhF~e~~~~~~~~~~~~~~r~F~V~i~~~~~~~~~di~~~~~~~~~~~~~~~-~v~v~~~ 563 (657)
..+++ |.+| +++|.|.|+|||||+++..+..+..+|+|+|||+|||++++++|||++++|+..+|+++.| .|.|+||
T Consensus 66 ~~~f~-Y~ip~~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg 144 (174)
T PF11721_consen 66 PSSFS-YDIPVVPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDG 144 (174)
T ss_dssp SSSEE-EEEE--S-EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEEEETT
T ss_pred CCceE-EEEecCCCcEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEEEeCC
Confidence 77778 8898 8999999999999999655444456899999999999999999999999997776777777 8999999
Q ss_pred eEEEEEEeccCcCccccCCcccC-ceEeeE
Q 006206 564 IIEIHFFWAGKGTCCIPFQGTYG-PLVSAI 592 (657)
Q Consensus 564 ~l~i~~~~~~~g~~~~~~~~~~~-~~~n~i 592 (657)
.|+|+|.|+++|...+|..+.++ |+||||
T Consensus 145 ~L~i~f~~~~~~~~~i~~~~~~~~p~IsaI 174 (174)
T PF11721_consen 145 TLNIQFVWAGKGTLCIPFIGSYGNPLISAI 174 (174)
T ss_dssp EEETTEEEE--SEEEEEEESSSSSSSEEEE
T ss_pred cEEEEEEecCCCcEEeeccccCCCcEEeeC
Confidence 99999999999999998877666 999997
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=6.5e-28 Score=249.33 Aligned_cols=294 Identities=26% Similarity=0.361 Sum_probs=195.0
Q ss_pred CCceeEEEEecCCCC-ccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEE
Q 006206 78 SCHITHLKIYALDIM-GELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISL 156 (657)
Q Consensus 78 ~~~v~~L~l~~~~l~-~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 156 (657)
.+-|+.+|+++|+++ +.+|.....+++++-|.|....+. .+|+.++.|.+|++|.+++|++. .+-..++.|+.|+.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence 445677777777777 457777777777777777777765 67777777777777777777776 455566777777777
Q ss_pred EeecccCC-CCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCC
Q 006206 157 SFSSNNFF-GPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLL 235 (657)
Q Consensus 157 ~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l 235 (657)
++..|++. .-+|..+..+..|..|||++|++. +.|..+..-+++-.|+||+|+|..+....+.+++.|-.|+|++|++
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence 77777664 235666667777777777777776 5677777777777777777777744445556777777777777777
Q ss_pred CCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccc-cCCcccccCCCCCcEEeccCCCCCCCCchh
Q 006206 236 EGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVS-GKIPDQLGTFAKLQLLDLSFNKLTGQIPTS 314 (657)
Q Consensus 236 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 314 (657)
. .+|..+..+..|++|.|++|.+.......+..+.+|+.|.+++.+-+ ..+|.++..+.+|..+|||.|.+. .+|..
T Consensus 163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 6 45556677777777777777665554555555666666666665432 346666666677777777777766 66666
Q ss_pred ccCCCCCcEEEccCCcCCCCCCccc-cCCCCceEecccccCCCCCCccccC-CCcE-EEeecCCcCC
Q 006206 315 LQDLSTLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSINA 378 (657)
Q Consensus 315 l~~l~~L~~L~L~~N~l~~~~p~~~-~~~~L~~LdLs~N~l~g~~p~~~~~-~~l~-~~l~~n~~~~ 378 (657)
+..+++|+.|+|++|+|+. +.... .-.+|++|+||.|+|+ .+|...++ +.|+ +.+.+|.+..
T Consensus 241 ly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~F 305 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTF 305 (1255)
T ss_pred HhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccc
Confidence 6666777777777776662 22111 2356666667776666 55666665 4443 4555555543
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=5.5e-27 Score=242.51 Aligned_cols=291 Identities=25% Similarity=0.361 Sum_probs=181.7
Q ss_pred CceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCC-CCCCccccCCCCCcEEE
Q 006206 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFT-GRVPTELGNLTKLISLS 157 (657)
Q Consensus 79 ~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~ 157 (657)
.+++-|.|....+ ..+|..++.|.+|++|.+++|++. .+...+..|+.|+.+.+.+|++. .-+|..+..|..|..||
T Consensus 32 t~~~WLkLnrt~L-~~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lD 109 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKL-EQVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILD 109 (1255)
T ss_pred hheeEEEechhhh-hhChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeee
Confidence 3567777777665 367888888888888888888876 55666777888888888888764 34677777788888888
Q ss_pred eecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCC
Q 006206 158 FSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEG 237 (657)
Q Consensus 158 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 237 (657)
|+.|++. ..|..+..-.++-.|+|++|++....-.-+.++..|-.||||+|++. .+|..+..+..|++|+|++|.+.-
T Consensus 110 LShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~h 187 (1255)
T KOG0444|consen 110 LSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNH 187 (1255)
T ss_pred cchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhH
Confidence 8888876 66777777777888888888887433344567777888888888876 455566777777777777776542
Q ss_pred -------------------------CchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCccccc
Q 006206 238 -------------------------PIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLG 292 (657)
Q Consensus 238 -------------------------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~ 292 (657)
.+|.++..+.+|..++++.|++.. .++.+-++++|+.|+||+|.++ .+....+
T Consensus 188 fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vPecly~l~~LrrLNLS~N~it-eL~~~~~ 265 (1255)
T KOG0444|consen 188 FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VPECLYKLRNLRRLNLSGNKIT-ELNMTEG 265 (1255)
T ss_pred HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-chHHHhhhhhhheeccCcCcee-eeeccHH
Confidence 244444444455555555444332 2344444555555555555554 3333334
Q ss_pred CCCCCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcCCC-CCCccc-cCCCCceEecccccCCCCCCccccC-CCcE-
Q 006206 293 TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSG-ELPVNI-IAPNLIALDVSYNPLSGNLPRNFAK-GGLS- 368 (657)
Q Consensus 293 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~~-~~~~L~~LdLs~N~l~g~~p~~~~~-~~l~- 368 (657)
...+|++|+||+|+++ .+|..+..+++|+.|.+.+|+++= -||..+ .+.+|+.+..++|+|. .+|+.++. ..|+
T Consensus 266 ~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~k 343 (1255)
T KOG0444|consen 266 EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQK 343 (1255)
T ss_pred HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHH
Confidence 4455555555555555 555555555555555555555542 244333 2455555555555554 45555554 3333
Q ss_pred EEeecCCcC
Q 006206 369 MNVIGSSIN 377 (657)
Q Consensus 369 ~~l~~n~~~ 377 (657)
+.|..|.+.
T Consensus 344 L~L~~NrLi 352 (1255)
T KOG0444|consen 344 LKLDHNRLI 352 (1255)
T ss_pred hccccccee
Confidence 555555554
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=2e-24 Score=213.76 Aligned_cols=288 Identities=27% Similarity=0.428 Sum_probs=236.7
Q ss_pred CCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEE
Q 006206 78 SCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLS 157 (657)
Q Consensus 78 ~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 157 (657)
...++.|++..+.+. ++|++++++..++.|+.++|.+. .+|..++.+.+|+.|+++.|.+. .+|+.++.+..|+.|+
T Consensus 67 L~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~ 143 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLD 143 (565)
T ss_pred ccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhh
Confidence 345678888888775 67888999999999999999887 78888999999999999999988 7888888999999999
Q ss_pred eecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCC
Q 006206 158 FSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEG 237 (657)
Q Consensus 158 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 237 (657)
..+|+++ ..|+.+.++.+|..|++.+|++....|..+. ++.|++||...|-+. .+|..++.+.+|..|++..|.+.
T Consensus 144 ~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~- 219 (565)
T KOG0472|consen 144 ATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR- 219 (565)
T ss_pred ccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-
Confidence 9999887 6777888888999999999999865555444 899999999988876 77888999999999999999988
Q ss_pred CchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccC
Q 006206 238 PIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQD 317 (657)
Q Consensus 238 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 317 (657)
.+| .|..+..|.+|+++.|.+...+.....++++|..|||++|+++ +.|+.+.-+.+|++||+|+|.|+ .+|..+++
T Consensus 220 ~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgn 296 (565)
T KOG0472|consen 220 FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGN 296 (565)
T ss_pred cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCccccc
Confidence 566 7889999999999999888878888889999999999999999 88999999999999999999999 67888999
Q ss_pred CCCCcEEEccCCcCCC-------------------------------------CCCcc-----ccCCCCceEecccccCC
Q 006206 318 LSTLQYLYLGNNNLSG-------------------------------------ELPVN-----IIAPNLIALDVSYNPLS 355 (657)
Q Consensus 318 l~~L~~L~L~~N~l~~-------------------------------------~~p~~-----~~~~~L~~LdLs~N~l~ 355 (657)
+ +|+.|-+.+|.+.. ..|.. ...-+.++|+++.-+++
T Consensus 297 l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt 375 (565)
T KOG0472|consen 297 L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT 375 (565)
T ss_pred c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc
Confidence 9 99999999997620 00100 11246678888888888
Q ss_pred CCCCccccC---CC-cE-EEeecCCcC
Q 006206 356 GNLPRNFAK---GG-LS-MNVIGSSIN 377 (657)
Q Consensus 356 g~~p~~~~~---~~-l~-~~l~~n~~~ 377 (657)
.+|+..+. .. .. ++++.|.+.
T Consensus 376 -~VPdEVfea~~~~~Vt~VnfskNqL~ 401 (565)
T KOG0472|consen 376 -LVPDEVFEAAKSEIVTSVNFSKNQLC 401 (565)
T ss_pred -cCCHHHHHHhhhcceEEEecccchHh
Confidence 45655443 22 33 788888875
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.85 E-value=7.1e-23 Score=221.95 Aligned_cols=289 Identities=28% Similarity=0.408 Sum_probs=189.5
Q ss_pred ceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEee
Q 006206 80 HITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 159 (657)
Q Consensus 80 ~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 159 (657)
+++.|+++++.+ +.+|..+..+.+|+.|+++.|.+. ..|.+..++.+|++|+|.+|.+. .+|..+..+.+|++|+++
T Consensus 46 ~L~~l~lsnn~~-~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNNQI-SSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeecccccc-ccCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccc
Confidence 488889888765 577877888888888888888886 67777888888888888888777 778888888888888888
Q ss_pred cccCCCCCchhhcCCC----------------------------------------CCCe-eecccccCCCCCchhc---
Q 006206 160 SNNFFGPLPKELGKLT----------------------------------------SLQQ-LYIDSSGVTGSIPQEF--- 195 (657)
Q Consensus 160 ~n~l~~~~p~~l~~l~----------------------------------------~L~~-L~Ls~n~l~~~~p~~l--- 195 (657)
.|++. .+|..+..+. .|++ |+|+.|.+....-..+
T Consensus 123 ~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l 201 (1081)
T KOG0618|consen 123 FNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANL 201 (1081)
T ss_pred hhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccch
Confidence 87765 3332211111 1111 3333332220000000
Q ss_pred ------------------------------------cCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCC--
Q 006206 196 ------------------------------------ANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEG-- 237 (657)
Q Consensus 196 ------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-- 237 (657)
..-.+|++++++.|+++ .+|++++.+.+|+.++...|+++.
T Consensus 202 ~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~lp 280 (1081)
T KOG0618|consen 202 EVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVALP 280 (1081)
T ss_pred hhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcccceEecccchhHHhhH
Confidence 00124555555656555 345666666666666666665531
Q ss_pred --------------------CchhhccCCCCCCeEEcCCCCCCC------------------------------------
Q 006206 238 --------------------PIPRSFRALNKLEDLRIGDLSAED------------------------------------ 261 (657)
Q Consensus 238 --------------------~~~~~l~~l~~L~~L~l~~~~~~~------------------------------------ 261 (657)
.+|.....++.|++|+|..|.+..
T Consensus 281 ~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~ 360 (1081)
T KOG0618|consen 281 LRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAA 360 (1081)
T ss_pred HHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHH
Confidence 233334445666666666555433
Q ss_pred -------------CChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCCCCCcEEEccC
Q 006206 262 -------------STLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGN 328 (657)
Q Consensus 262 -------------~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 328 (657)
...+.+.++++|+.|+|++|++.......+.++..|++|+||+|+++ .+|..+..++.|+.|....
T Consensus 361 Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahs 439 (1081)
T KOG0618|consen 361 LQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHS 439 (1081)
T ss_pred HHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcC
Confidence 23344556677888888888887433345677888888888888887 7778888888888888888
Q ss_pred CcCCCCCCccccCCCCceEecccccCCC-CCCccccCCCcE-EEeecCC
Q 006206 329 NNLSGELPVNIIAPNLIALDVSYNPLSG-NLPRNFAKGGLS-MNVIGSS 375 (657)
Q Consensus 329 N~l~~~~p~~~~~~~L~~LdLs~N~l~g-~~p~~~~~~~l~-~~l~~n~ 375 (657)
|++. .+|....++.|+.+|||.|+|+. .+|...-.+.|+ +++++|.
T Consensus 440 N~l~-~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 440 NQLL-SFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred Ccee-echhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 8887 77766678999999999999974 445433336676 8999986
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=9.8e-20 Score=218.82 Aligned_cols=270 Identities=21% Similarity=0.280 Sum_probs=145.9
Q ss_pred CChhccCCC-CCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcC
Q 006206 95 LPSELFMLR-KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGK 173 (657)
Q Consensus 95 lp~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 173 (657)
+|..+..++ +|+.|++.++.+. .+|..+ .+.+|+.|++++|.+. .+|..+..+++|+.|+|+++.....+|. +..
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~ 655 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSM 655 (1153)
T ss_pred cCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-ccc
Confidence 444444443 3555555555443 344443 2344555555555544 3444444555555555554433333332 444
Q ss_pred CCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCC---------------
Q 006206 174 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGP--------------- 238 (657)
Q Consensus 174 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--------------- 238 (657)
+++|+.|+|++|.....+|..+..+++|+.|++++|.....+|..+ ++++|+.|++++|.....
T Consensus 656 l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~ 734 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDE 734 (1153)
T ss_pred CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCC
Confidence 4555555555544444445555555555555555543333344332 344455555544433333
Q ss_pred -----chhhccCCCCCCeEEcCCCCCCCC-------ChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCC
Q 006206 239 -----IPRSFRALNKLEDLRIGDLSAEDS-------TLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNK 306 (657)
Q Consensus 239 -----~~~~l~~l~~L~~L~l~~~~~~~~-------~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 306 (657)
+|..+ .+++|++|.+.++..... .+......++|+.|+|++|...+.+|..++++++|+.|+|++|.
T Consensus 735 n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~ 813 (1153)
T PLN03210 735 TAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI 813 (1153)
T ss_pred Cccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCC
Confidence 33322 244444444443221100 01111234578888888887777788888888888888888875
Q ss_pred CCCCCchhccCCCCCcEEEccCCcCCCCCCccccCCCCceEecccccCCCCCCccccC-CCcE-EEeecC
Q 006206 307 LTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGS 374 (657)
Q Consensus 307 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~LdLs~N~l~g~~p~~~~~-~~l~-~~l~~n 374 (657)
..+.+|..+ .+++|+.|+|++|.....+|.. ..+|++|+|++|.++ .+|..+.. +.|+ +++.++
T Consensus 814 ~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 814 NLETLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGC 879 (1153)
T ss_pred CcCeeCCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCC
Confidence 544677655 6788888888887665556532 367888888888887 46766655 5554 666664
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=8.3e-24 Score=209.37 Aligned_cols=263 Identities=27% Similarity=0.367 Sum_probs=174.1
Q ss_pred eeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeec
Q 006206 81 ITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSS 160 (657)
Q Consensus 81 v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 160 (657)
+..+.++.|++. .+.+.+.++..|.+|++++|.+. ..|.+++.+..++.|+.++|+++ .+|..++.+.+|+.|+++.
T Consensus 47 l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 47 LQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred hhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccc
Confidence 556677777664 44455777888888888888876 67777888888888888888887 7777888888888888888
Q ss_pred ccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCch
Q 006206 161 NNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIP 240 (657)
Q Consensus 161 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 240 (657)
|.+. .+|+.++.+..|+.++..+|+++ ..|..+.++.+|..|++.+|++....|+.+. ++.|++|+...|-++ .+|
T Consensus 124 n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP 199 (565)
T KOG0472|consen 124 NELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLP 199 (565)
T ss_pred ccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCC
Confidence 8876 56667777788888888888877 5677777777888888888887755554444 778888887777665 566
Q ss_pred hhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCccccc-CCCCCcEEeccCCCCCCCCchhccCCC
Q 006206 241 RSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLG-TFAKLQLLDLSFNKLTGQIPTSLQDLS 319 (657)
Q Consensus 241 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 319 (657)
..++.+.+|+-|++..|.+...+ .|.++..|++|.++.|.+. .+|.... .+++|..|||..|+++ +.|..+.-++
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLr 275 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLR 275 (565)
T ss_pred hhhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhh
Confidence 66666666666666666554432 4555555555555555555 4444332 5555555555555555 4555555555
Q ss_pred CCcEEEccCCcCCCCCCccccCCCCceEecccccCC
Q 006206 320 TLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLS 355 (657)
Q Consensus 320 ~L~~L~L~~N~l~~~~p~~~~~~~L~~LdLs~N~l~ 355 (657)
+|++||+++|.+++..+....+ .|+.|-+.+|++.
T Consensus 276 sL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 276 SLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred hhhhhcccCCccccCCcccccc-eeeehhhcCCchH
Confidence 5555555555555322222223 4555555555554
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=8.3e-20 Score=204.51 Aligned_cols=254 Identities=27% Similarity=0.351 Sum_probs=198.6
Q ss_pred eeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeec
Q 006206 81 ITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSS 160 (657)
Q Consensus 81 v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 160 (657)
-..|+++.+++. .+|+.+. ++|+.|++++|.++ .+|. .+++|++|+|++|+++ .+|.. .++|+.|++++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccC
Confidence 457899999887 6888775 48999999999998 5664 3578999999999998 56653 46899999999
Q ss_pred ccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCch
Q 006206 161 NNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIP 240 (657)
Q Consensus 161 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 240 (657)
|.+. .+|.. ..+|+.|++++|+++. +|. .+++|+.|++++|++.+ +|.. ..+|+.|++++|.+++ +|
T Consensus 272 N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP 338 (788)
T PRK15387 272 NPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LP 338 (788)
T ss_pred Cchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-cc
Confidence 9987 45543 3578899999999984 554 24789999999999985 4442 3468889999999974 55
Q ss_pred hhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCCCC
Q 006206 241 RSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLST 320 (657)
Q Consensus 241 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 320 (657)
.. ..+|+.|++++|.+...+. ...+|+.|++++|+++ .+|.. +.+|+.|+|++|+|+ .+|.. .++
T Consensus 339 ~l---p~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~ 403 (788)
T PRK15387 339 TL---PSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL---PSE 403 (788)
T ss_pred cc---ccccceEecCCCccCCCCC----CCcccceehhhccccc-cCccc---ccccceEEecCCccc-CCCCc---ccC
Confidence 32 2589999999998876432 2367889999999998 46653 367999999999998 46643 368
Q ss_pred CcEEEccCCcCCCCCCccccCCCCceEecccccCCCCCCccccC-CCcE-EEeecCCcC
Q 006206 321 LQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSIN 377 (657)
Q Consensus 321 L~~L~L~~N~l~~~~p~~~~~~~L~~LdLs~N~l~g~~p~~~~~-~~l~-~~l~~n~~~ 377 (657)
|+.|++++|+++ .+|.. ..+|+.|+|++|+|+ .+|..+.. ..+. +++++|+++
T Consensus 404 L~~LdLS~N~Ls-sIP~l--~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 404 LKELMVSGNRLT-SLPML--PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred CCEEEccCCcCC-CCCcc--hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence 999999999998 47742 457899999999998 68888776 5554 899999986
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=2.9e-19 Score=214.81 Aligned_cols=288 Identities=20% Similarity=0.215 Sum_probs=225.3
Q ss_pred CceeEEEEecCCCCc--cCChhccCCCCCCEEEccCCC------CCCCCchhcCCCC-CCCeeEcccCcCCCCCCccccC
Q 006206 79 CHITHLKIYALDIMG--ELPSELFMLRKLMDLNLGQNV------LNGSIPAEIGQLS-NMQYLSLGINNFTGRVPTELGN 149 (657)
Q Consensus 79 ~~v~~L~l~~~~l~~--~lp~~l~~l~~L~~L~Ls~n~------l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~ 149 (657)
.+++.+.+....+.. .-+..|..+++|+.|.+..+. +...+|..+..++ +|+.|++.++.+. .+|..| .
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~ 609 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-R 609 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-C
Confidence 456666554333321 234568899999999997653 2334677777765 6999999999887 788877 5
Q ss_pred CCCCcEEEeecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEE
Q 006206 150 LTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLR 229 (657)
Q Consensus 150 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 229 (657)
..+|+.|+|.+|++. .++..+..+++|+.|+|+++.....+|. +..+++|+.|+|++|.....+|..+.++++|+.|+
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 789999999999986 6777888999999999998876667774 88899999999999987788999999999999999
Q ss_pred ccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccc------------------
Q 006206 230 LQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQL------------------ 291 (657)
Q Consensus 230 l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l------------------ 291 (657)
+++|.....+|..+ ++++|+.|++++|......+. ...+|++|+|++|.+. .+|..+
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKL 762 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccc-cccccccccccccccccccchhhc
Confidence 99987767788765 789999999998865433322 2357888888888765 344321
Q ss_pred ------------cCCCCCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcCCCCCCccccCCCCceEecccccCCCCCC
Q 006206 292 ------------GTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLP 359 (657)
Q Consensus 292 ------------~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~LdLs~N~l~g~~p 359 (657)
..+++|+.|+|++|...+.+|..+.++++|+.|+|++|...+.+|....+++|+.|+|++|.....+|
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p 842 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFP 842 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccc
Confidence 12357889999999877789999999999999999998777788977788999999999987666666
Q ss_pred ccccCCCc-EEEeecCCcC
Q 006206 360 RNFAKGGL-SMNVIGSSIN 377 (657)
Q Consensus 360 ~~~~~~~l-~~~l~~n~~~ 377 (657)
... .++ .+++.+|.+.
T Consensus 843 ~~~--~nL~~L~Ls~n~i~ 859 (1153)
T PLN03210 843 DIS--TNISDLNLSRTGIE 859 (1153)
T ss_pred ccc--cccCEeECCCCCCc
Confidence 432 334 4788888875
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=3.7e-19 Score=200.62 Aligned_cols=321 Identities=20% Similarity=0.281 Sum_probs=227.4
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCC-------CCCCCCCCCCCCCCCCCC---C---CCCCCCeeeecCCCCCceeEEEEec
Q 006206 22 AQTSTDSAEVDALNKLIDYWNLR-------SKINLTTIDPCTRNASWA---S---ENANPRVACDCTSNSCHITHLKIYA 88 (657)
Q Consensus 22 ~~~~~~~~e~~aL~~~~~~~~~~-------~~w~~~~~d~C~~~~~W~---~---~~~~~~v~C~~~~~~~~v~~L~l~~ 88 (657)
.++.+.++|+..+.++.+.++-+ ..|+.. .|+|-....-. + ......|.|. ...|+++.+.+
T Consensus 56 ~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~-~~fc~~~~~~~~~l~~~~~~~~~tv~~~----~~~vt~l~~~g 130 (754)
T PRK15370 56 PPETASPEEIKSKFECLRMLAFPAYADNIQYSRGGA-DQYCILSENSQEILSIVFNTEGYTVEGG----GKSVTYTRVTE 130 (754)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCchhhccccccCCC-CcccccCCcchhhheeeecCCceEEecC----CCccccccccc
Confidence 34567788999999988888665 337766 78886211000 0 0122335553 23566666644
Q ss_pred CCCCccC--------------------C--------hhc-----cCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcc
Q 006206 89 LDIMGEL--------------------P--------SEL-----FMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLG 135 (657)
Q Consensus 89 ~~l~~~l--------------------p--------~~l-----~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 135 (657)
....... + ..+ .-..+...|+++++.++ .+|..+. +.|+.|+|+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls 207 (754)
T PRK15370 131 SEQASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQITTLILD 207 (754)
T ss_pred ccccccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCcEEEec
Confidence 3211100 0 000 11245788999999988 5776553 579999999
Q ss_pred cCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCC
Q 006206 136 INNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKI 215 (657)
Q Consensus 136 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 215 (657)
+|+++ .+|..+. ++|++|++++|+++ .+|..+. .+|+.|+|++|++. .+|..+. .+|+.|++++|++. .+
T Consensus 208 ~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~L 277 (754)
T PRK15370 208 NNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CL 277 (754)
T ss_pred CCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-cc
Confidence 99998 5776554 58999999999987 5676553 47999999999998 6777664 58999999999998 46
Q ss_pred chhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCC
Q 006206 216 PEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFA 295 (657)
Q Consensus 216 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~ 295 (657)
|..+. ++|+.|++++|.++. +|..+. ++|+.|++++|.+...+... .++|+.|++++|.+++ +|..+. +
T Consensus 278 P~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~l~--~ 346 (754)
T PRK15370 278 PENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTALPETL---PPGLKTLEAGENALTS-LPASLP--P 346 (754)
T ss_pred ccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccCCccc---cccceeccccCCcccc-CChhhc--C
Confidence 66553 589999999999984 454432 47889999998887543221 3689999999999984 776654 7
Q ss_pred CCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcCCCCCCccccCCCCceEecccccCCCCCCccccC-----CC-cEE
Q 006206 296 KLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRNFAK-----GG-LSM 369 (657)
Q Consensus 296 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~LdLs~N~l~g~~p~~~~~-----~~-l~~ 369 (657)
+|+.|+|++|+|+ .+|..+. ++|+.|+|++|+++ .+|..+ ..+|+.|++++|+|+ .+|+.+.. +. ..+
T Consensus 347 sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l-~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L 420 (754)
T PRK15370 347 ELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENL-PAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRI 420 (754)
T ss_pred cccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhH-HHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEE
Confidence 9999999999998 5776553 68999999999998 566443 357999999999998 56654322 22 348
Q ss_pred EeecCCcC
Q 006206 370 NVIGSSIN 377 (657)
Q Consensus 370 ~l~~n~~~ 377 (657)
++.+|+++
T Consensus 421 ~L~~Npls 428 (754)
T PRK15370 421 IVEYNPFS 428 (754)
T ss_pred EeeCCCcc
Confidence 88899886
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.80 E-value=2e-21 Score=192.49 Aligned_cols=275 Identities=22% Similarity=0.250 Sum_probs=193.6
Q ss_pred CCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeec-ccCCCCCchhhcCCCCCCeeec
Q 006206 104 KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSS-NNFFGPLPKELGKLTSLQQLYI 182 (657)
Q Consensus 104 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L 182 (657)
.-++++|..|.|+...|.+|+.+++|+.|||++|.|+.+-|+.|.++++|..|-+.+ |+++......|++|..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 456788888888866667888888888889988888888888888888887777666 7787555567888888888888
Q ss_pred ccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCC------------CCchhhccCCCCCC
Q 006206 183 DSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLE------------GPIPRSFRALNKLE 250 (657)
Q Consensus 183 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~------------~~~~~~l~~l~~L~ 250 (657)
..|++.-...+.|..+++|..|.+.+|.+.......+..+..++.+.+..|.+. ...|..++...-..
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 888888777788888888888888888887444447778888888888777632 11222233333333
Q ss_pred eEEcCCCCCCCCChhhh-hcCCCCCEEEccCcccccCCcc-cccCCCCCcEEeccCCCCCCCCchhccCCCCCcEEEccC
Q 006206 251 DLRIGDLSAEDSTLDFL-ESQKSLSILSLRNCRVSGKIPD-QLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGN 328 (657)
Q Consensus 251 ~L~l~~~~~~~~~~~~l-~~~~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 328 (657)
...+...++.......+ ..+.++..--.+.+...+..|. .|..+++|+.|+|++|+|++.-+.+|..+..++.|.|..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 33333333322222211 1112222112233334434443 678889999999999999988888899999999999999
Q ss_pred CcCCCCCCccc--cCCCCceEecccccCCCCCCccccC-CCcE-EEeecCCcCCC
Q 006206 329 NNLSGELPVNI--IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSINAN 379 (657)
Q Consensus 329 N~l~~~~p~~~--~~~~L~~LdLs~N~l~g~~p~~~~~-~~l~-~~l~~n~~~~~ 379 (657)
|++. .+.... .++.|+.|+|.+|+|+...|..|.. ..+. +++..|++.++
T Consensus 308 N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 308 NKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred chHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence 9886 333222 3688999999999999888877766 4454 88999988864
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=5.5e-19 Score=199.19 Aligned_cols=245 Identities=26% Similarity=0.451 Sum_probs=196.3
Q ss_pred ceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEee
Q 006206 80 HITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 159 (657)
Q Consensus 80 ~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 159 (657)
+.+.|++++++++ .+|..+. ++|+.|+|++|.++ .+|..+. ++|++|++++|+++ .+|..+. .+|+.|+|+
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 5688999988876 4666553 57999999999998 6776654 58999999999998 6777654 479999999
Q ss_pred cccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCc
Q 006206 160 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPI 239 (657)
Q Consensus 160 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 239 (657)
+|++. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|+++. +|..+. ++|+.|++++|.++. +
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-L 319 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-L 319 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-C
Confidence 99998 6777664 58999999999998 5777654 589999999999984 454432 579999999999984 5
Q ss_pred hhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCCC
Q 006206 240 PRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLS 319 (657)
Q Consensus 240 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 319 (657)
|..+ .++|+.|++++|.+...+. .+ .++|+.|+|++|+++ .+|..+. ++|+.|+|++|+|+ .+|..+. .
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt~LP~-~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~ 388 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALTSLPA-SL--PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--A 388 (754)
T ss_pred Cccc--cccceeccccCCccccCCh-hh--cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--H
Confidence 5444 3689999999998876432 23 369999999999998 5777664 79999999999998 6776654 3
Q ss_pred CCcEEEccCCcCCCCCCccc-----cCCCCceEecccccCC
Q 006206 320 TLQYLYLGNNNLSGELPVNI-----IAPNLIALDVSYNPLS 355 (657)
Q Consensus 320 ~L~~L~L~~N~l~~~~p~~~-----~~~~L~~LdLs~N~l~ 355 (657)
.|+.|++++|+++ .+|..+ ..+.+..|+|.+|+++
T Consensus 389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 7999999999998 666543 2478899999999997
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.79 E-value=7.3e-19 Score=196.94 Aligned_cols=243 Identities=26% Similarity=0.325 Sum_probs=192.3
Q ss_pred CceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEe
Q 006206 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 158 (657)
Q Consensus 79 ~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 158 (657)
.+++.|.+..|+++. +|. ..++|++|+|++|.++ .+|.. .++|+.|+|++|.++ .+|.. .++|+.|+|
T Consensus 222 ~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~L 289 (788)
T PRK15387 222 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWI 289 (788)
T ss_pred cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhc---hhhcCEEEC
Confidence 478999999998864 664 3589999999999998 56643 468999999999998 55653 357889999
Q ss_pred ecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCC
Q 006206 159 SSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGP 238 (657)
Q Consensus 159 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 238 (657)
++|+++ .+|. .+++|+.|+|++|++++ +|.. ..+|+.|++++|++++ +|.. ..+|+.|++++|++++
T Consensus 290 s~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~- 356 (788)
T PRK15387 290 FGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS- 356 (788)
T ss_pred cCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-cccc---ccccceEecCCCccCC-
Confidence 999998 4554 24789999999999985 4542 2468899999999984 5542 3579999999999984
Q ss_pred chhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCC
Q 006206 239 IPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDL 318 (657)
Q Consensus 239 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 318 (657)
+|.. ..+|+.|++++|.+...+. ...+|+.|+|++|.+++ +|.. .++|+.|++++|+++ .+|.. .
T Consensus 357 LP~l---p~~L~~L~Ls~N~L~~LP~----l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~ 421 (788)
T PRK15387 357 LPTL---PSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---P 421 (788)
T ss_pred CCCC---CcccceehhhccccccCcc----cccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---h
Confidence 5543 3578889999988775432 23679999999999984 6643 368999999999998 57753 3
Q ss_pred CCCcEEEccCCcCCCCCCccc-cCCCCceEecccccCCCCCCccc
Q 006206 319 STLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNF 362 (657)
Q Consensus 319 ~~L~~L~L~~N~l~~~~p~~~-~~~~L~~LdLs~N~l~g~~p~~~ 362 (657)
.+|+.|+|++|+++ .+|..+ .+++|+.|+|++|+|++.+|..+
T Consensus 422 ~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 422 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 57889999999998 788665 47999999999999999888655
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.79 E-value=5.7e-21 Score=207.34 Aligned_cols=266 Identities=25% Similarity=0.283 Sum_probs=211.4
Q ss_pred ceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEee
Q 006206 80 HITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 159 (657)
Q Consensus 80 ~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 159 (657)
+++.|..+.|.+....+. ..-.+|+++|++.|.++ .+|+.++.+.+|+.|++.+|+++ .+|..+..+.+|+.|.+.
T Consensus 220 ~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~ 295 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAA 295 (1081)
T ss_pred chheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhh
Confidence 455555555555422211 12347888888888887 57788888888888888888886 778888888888888888
Q ss_pred cccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCC-CcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCC
Q 006206 160 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKS-LRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGP 238 (657)
Q Consensus 160 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~-L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 238 (657)
.|.+. -+|+....+.+|++|+|..|++....+..+..+.. |+.|+.+.|++.....-.-..++.|+.|.+.+|.++..
T Consensus 296 ~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~ 374 (1081)
T KOG0618|consen 296 YNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDS 374 (1081)
T ss_pred hhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccccc
Confidence 88887 56666777888999999888887433333343333 77777777777633322223567899999999999988
Q ss_pred chhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCC
Q 006206 239 IPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDL 318 (657)
Q Consensus 239 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 318 (657)
.-..+.+.++|+.|+|+.|.+...+...+.++..|++|+||+|.++ .+|+.+..++.|++|...+|++. ..| .+..+
T Consensus 375 c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l 451 (1081)
T KOG0618|consen 375 CFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQL 451 (1081)
T ss_pred chhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhc
Confidence 8888999999999999999999999999999999999999999999 78899999999999999999998 778 78999
Q ss_pred CCCcEEEccCCcCCC-CCCccccCCCCceEeccccc
Q 006206 319 STLQYLYLGNNNLSG-ELPVNIIAPNLIALDVSYNP 353 (657)
Q Consensus 319 ~~L~~L~L~~N~l~~-~~p~~~~~~~L~~LdLs~N~ 353 (657)
+.|+.+|++.|+|+. .+|....-++|++|||++|.
T Consensus 452 ~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 452 PQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred CcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 999999999999985 34433334899999999997
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.78 E-value=2.4e-20 Score=194.50 Aligned_cols=272 Identities=22% Similarity=0.243 Sum_probs=175.4
Q ss_pred EEEEecCCCC-ccCChhccCCCCCCEEEccCCCCCCC----CchhcCCCCCCCeeEcccCcCCC------CCCccccCCC
Q 006206 83 HLKIYALDIM-GELPSELFMLRKLMDLNLGQNVLNGS----IPAEIGQLSNMQYLSLGINNFTG------RVPTELGNLT 151 (657)
Q Consensus 83 ~L~l~~~~l~-~~lp~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~------~~p~~~~~l~ 151 (657)
.|+|.++++. +.....+..++.|+.|+++++.++.. ++..+...++|++|+++++.+.+ .++..+.+++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 3566666665 34455566677788888888887542 55566677788888888887762 2334566778
Q ss_pred CCcEEEeecccCCCCCchhhcCCCC---CCeeecccccCCC----CCchhccCC-CCCcEEEccCCcCCCC----Cchhc
Q 006206 152 KLISLSFSSNNFFGPLPKELGKLTS---LQQLYIDSSGVTG----SIPQEFANL-KSLRILWASDNLFTGK----IPEFF 219 (657)
Q Consensus 152 ~L~~L~Ls~n~l~~~~p~~l~~l~~---L~~L~Ls~n~l~~----~~p~~l~~l-~~L~~L~Ls~n~l~~~----~~~~l 219 (657)
+|++|++++|.+....+..+..+.+ |++|++++|+++. .+...+..+ ++|+.|++++|.+++. ++..+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 8888888888887655655555544 8888888888763 233445566 7888888888887742 33445
Q ss_pred CCCCcccEEEccCCCCCCC----chhhccCCCCCCeEEcCCCCCCCCCh----hhhhcCCCCCEEEccCcccccCCcccc
Q 006206 220 GTLTELADLRLQGTLLEGP----IPRSFRALNKLEDLRIGDLSAEDSTL----DFLESQKSLSILSLRNCRVSGKIPDQL 291 (657)
Q Consensus 220 ~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~Ls~n~l~~~~p~~l 291 (657)
..+++|++|++++|.+++. ++..+..+++|+.|++++|.+..... ..+..+++|++|++++|.+++.....+
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 5667788888888877742 33345555678888887776654422 234456778888888777765322222
Q ss_pred c-----CCCCCcEEeccCCCCCC----CCchhccCCCCCcEEEccCCcCCCC----CCcccc-C-CCCceEecccccC
Q 006206 292 G-----TFAKLQLLDLSFNKLTG----QIPTSLQDLSTLQYLYLGNNNLSGE----LPVNII-A-PNLIALDVSYNPL 354 (657)
Q Consensus 292 ~-----~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~-~-~~L~~LdLs~N~l 354 (657)
. ..+.|++|++++|.+++ .+...+..+++|++|++++|.++.. +..... . +.|++||+.+|++
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 1 13677888888877762 2333455567777788887777743 221111 2 5677777777654
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.75 E-value=3.5e-20 Score=183.74 Aligned_cols=278 Identities=22% Similarity=0.209 Sum_probs=213.7
Q ss_pred CCCCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEccc-CcCCCCCCccccCCCCCc
Q 006206 76 SNSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGI-NNFTGRVPTELGNLTKLI 154 (657)
Q Consensus 76 ~~~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~ 154 (657)
+-++..+.|+|..|+++...|..|..+++|+.|||++|.|+.+-|..|..+++|..|-+.+ |+|+..--..|.+|..|+
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 3456789999999999877778899999999999999999988999999999988877666 899855456789999999
Q ss_pred EEEeecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCC------------CchhcCCC
Q 006206 155 SLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGK------------IPEFFGTL 222 (657)
Q Consensus 155 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~------------~~~~l~~l 222 (657)
.|.+.-|++.-...+.|..+++|..|.+..|.+...--.++..+.+++++.+..|.+... .|..++..
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga 223 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA 223 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence 999999999988889999999999999999999854444889999999999998874321 11222222
Q ss_pred CcccEEEccCCCCCCCchhhccCCCCCCeE----EcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCc
Q 006206 223 TELADLRLQGTLLEGPIPRSFRALNKLEDL----RIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQ 298 (657)
Q Consensus 223 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L----~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 298 (657)
.-..-..+..+++...-+..|... ++.+ ...++.....+...|..+++|+.|+|++|++++.-+.+|..+..++
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~ 301 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQ 301 (498)
T ss_pred eecchHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhh
Confidence 222222333333332222222211 2222 2222222333556788999999999999999988888999999999
Q ss_pred EEeccCCCCCCCCchhccCCCCCcEEEccCCcCCCCCCcccc-CCCCceEecccccCC
Q 006206 299 LLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNII-APNLIALDVSYNPLS 355 (657)
Q Consensus 299 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~~~L~~LdLs~N~l~ 355 (657)
.|.|..|+|...--..|.++..|+.|+|.+|+|+...|..+. +.+|.+|+|-.|++.
T Consensus 302 eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 302 ELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 999999999866666789999999999999999977675553 678999999999876
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=1.9e-18 Score=180.27 Aligned_cols=252 Identities=23% Similarity=0.261 Sum_probs=193.7
Q ss_pred ceeEEEEecCCCCc----cCChhccCCCCCCEEEccCCCCCC------CCchhcCCCCCCCeeEcccCcCCCCCCccccC
Q 006206 80 HITHLKIYALDIMG----ELPSELFMLRKLMDLNLGQNVLNG------SIPAEIGQLSNMQYLSLGINNFTGRVPTELGN 149 (657)
Q Consensus 80 ~v~~L~l~~~~l~~----~lp~~l~~l~~L~~L~Ls~n~l~~------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 149 (657)
+++.|++.++.+.. .++..+...+.|++|+++++.+.+ .++..+..+++|+.|+|++|.+.+..+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 48899999998754 366667788899999999988762 24456778999999999999998666666665
Q ss_pred CCC---CcEEEeecccCCCC----CchhhcCC-CCCCeeecccccCCCC----CchhccCCCCCcEEEccCCcCCCC---
Q 006206 150 LTK---LISLSFSSNNFFGP----LPKELGKL-TSLQQLYIDSSGVTGS----IPQEFANLKSLRILWASDNLFTGK--- 214 (657)
Q Consensus 150 l~~---L~~L~Ls~n~l~~~----~p~~l~~l-~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~--- 214 (657)
+.+ |++|++++|.+.+. +...+..+ ++|+.|++++|.+++. ++..+..+++|++|++++|.+.+.
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 555 99999999998732 23345666 8999999999999843 344567788999999999999843
Q ss_pred -CchhcCCCCcccEEEccCCCCCCC----chhhccCCCCCCeEEcCCCCCCCCChhhhh-----cCCCCCEEEccCcccc
Q 006206 215 -IPEFFGTLTELADLRLQGTLLEGP----IPRSFRALNKLEDLRIGDLSAEDSTLDFLE-----SQKSLSILSLRNCRVS 284 (657)
Q Consensus 215 -~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~Ls~n~l~ 284 (657)
++..+..+++|++|++++|.+.+. +...+..+++|+.|++++|.+.......+. ..+.|++|++++|.++
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 334455667999999999998744 344567789999999999987764333332 2479999999999987
Q ss_pred c----CCcccccCCCCCcEEeccCCCCCCC----CchhccCC-CCCcEEEccCCcC
Q 006206 285 G----KIPDQLGTFAKLQLLDLSFNKLTGQ----IPTSLQDL-STLQYLYLGNNNL 331 (657)
Q Consensus 285 ~----~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l-~~L~~L~L~~N~l 331 (657)
. .+...+..+++|+.|++++|.++.. +...+... +.|+.|++.+|.+
T Consensus 264 ~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 264 DDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred cHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 3 2445566778999999999999855 34344444 7899999988864
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.71 E-value=5.9e-17 Score=182.15 Aligned_cols=111 Identities=32% Similarity=0.516 Sum_probs=93.2
Q ss_pred CCChhhhhhccccCC---ccccccCCCCC-ceEEEEEeeeeeeecCCcCcccccceEEEEEECCEEecccCchhhhcCCC
Q 006206 473 TLDSELYKTARISPS---SLRYYGLGLEN-GKYRIDLHFAEITMEDSLSWKGLGRRVFDVYIQGERVLRDLNIKKEAGGS 548 (657)
Q Consensus 473 ~~p~~ly~t~r~~~~---~l~~~~~~v~~-g~y~v~lhF~e~~~~~~~~~~~~~~r~F~V~i~~~~~~~~~di~~~~~~~ 548 (657)
.+|+.+|+|||.+.. +++ |.|++++ |.|.|||||||+... ....++|+|||||||+.+.++|||.+++|+.
T Consensus 249 ~~P~~VyqTA~~~~~~~~~lt-y~~~v~~~~~Y~VrLhFaEi~~~----~~~~~~R~F~V~ing~~~~~~~di~~~~g~~ 323 (623)
T PLN03150 249 FYPESLYQSALVSTDTQPDLS-YTMDVDPNRNYSVWLHFAEIDNS----ITAEGKRVFDVLINGDTAFKDVDIVKMSGER 323 (623)
T ss_pred cChHHHhhhhccccCCCCceE-EEeecCCCCCEEEEEEEEeccCc----cCCCceEEEEEEECCEEeecccChhhhcCCc
Confidence 458999999999763 678 9999966 599999999999622 2345899999999999999999999988877
Q ss_pred CceEEEEEEEEeeCCeEEEEEEeccCcCccccCCcccCceEeeEEEEecc
Q 006206 549 KRALVKTFEANVTNTIIEIHFFWAGKGTCCIPFQGTYGPLVSAIHASQVS 598 (657)
Q Consensus 549 ~~~~~~~~~v~v~~~~l~i~~~~~~~g~~~~~~~~~~~~~~n~iei~~~~ 598 (657)
.+|++++|.+.++++.++|+| .|..+. +|+|||||||++.
T Consensus 324 ~~~~~~~~~v~~~~g~l~isl---------~p~~~s-~pilNaiEI~~~~ 363 (623)
T PLN03150 324 YTALVLNKTVAVSGRTLTIVL---------QPKKGT-HAIINAIEVFEII 363 (623)
T ss_pred ccceEEEeEEeecCCeEEEEE---------eeCCCC-cceeeeeeeeecc
Confidence 899999999999888899998 223333 4999999999863
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=1.5e-18 Score=153.29 Aligned_cols=162 Identities=28% Similarity=0.500 Sum_probs=125.5
Q ss_pred CCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEE
Q 006206 78 SCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLS 157 (657)
Q Consensus 78 ~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 157 (657)
..+++.|.+++|.++ .+|+.+.++.+|+.|++++|+++ .+|.+++.+++|+.|+++-|++. .+|..|+.++.|+.||
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 346788888888775 56777888888888888888887 67888888888888888888887 7788888888888888
Q ss_pred eecccCCC-CCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCC
Q 006206 158 FSSNNFFG-PLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLE 236 (657)
Q Consensus 158 Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 236 (657)
|.+|++.. .+|..|..+..|+.|+|+.|.+. .+|..++++++|+.|.+.+|.+. .+|..++.++.|++|.+.+|+++
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 88887763 46777777778888888888876 57777888888888888888776 66777888888888888888877
Q ss_pred CCchhhccC
Q 006206 237 GPIPRSFRA 245 (657)
Q Consensus 237 ~~~~~~l~~ 245 (657)
.+|..+++
T Consensus 187 -vlppel~~ 194 (264)
T KOG0617|consen 187 -VLPPELAN 194 (264)
T ss_pred -ecChhhhh
Confidence 44444443
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=4e-18 Score=150.66 Aligned_cols=155 Identities=30% Similarity=0.514 Sum_probs=124.5
Q ss_pred ccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCC
Q 006206 99 LFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQ 178 (657)
Q Consensus 99 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 178 (657)
+.++.+++.|-||+|.++ .+|..+..+.+|+.|++++|++. .+|..++.+++|+.|+++-|.+. .+|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 556778888899999988 67778889999999999999998 78888999999999999998886 7888899999999
Q ss_pred eeecccccCC-CCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCC
Q 006206 179 QLYIDSSGVT-GSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDL 257 (657)
Q Consensus 179 ~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~ 257 (657)
.|||..|++. ..+|..|..+..|+.|+|++|.+. .+|..++++++|+.|.+..|.+- .+|..++.++.|++|++.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 9999988886 457888888888888888888887 66777788888888888887766 45666665555555554443
Q ss_pred C
Q 006206 258 S 258 (657)
Q Consensus 258 ~ 258 (657)
.
T Consensus 184 r 184 (264)
T KOG0617|consen 184 R 184 (264)
T ss_pred e
Confidence 3
No 25
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=99.61 E-value=3.2e-15 Score=155.85 Aligned_cols=110 Identities=27% Similarity=0.477 Sum_probs=83.9
Q ss_pred CCChhhhhhccccC-----CccccccCCCCCc-eEEEEEeeeeeeecCCcCcccccceEEEEEECCEEecccCchhhhcC
Q 006206 473 TLDSELYKTARISP-----SSLRYYGLGLENG-KYRIDLHFAEITMEDSLSWKGLGRRVFDVYIQGERVLRDLNIKKEAG 546 (657)
Q Consensus 473 ~~p~~ly~t~r~~~-----~~l~~~~~~v~~g-~y~v~lhF~e~~~~~~~~~~~~~~r~F~V~i~~~~~~~~~di~~~~~ 546 (657)
.+|.+||+|||... .+++ |.+ ++++ .|.|||||||+... ....++|+|+|||||+.+.++++.. ..+
T Consensus 231 ~~P~~V~~TA~~~~~~s~~~nlt-w~~-~~~~~~y~v~lHFaEi~~~----~~~~~~R~F~IyiN~~~~~~~~~~~-~~~ 303 (347)
T PF12819_consen 231 DAPSAVYQTARTPSNSSDPLNLT-WSF-VDPGFSYYVRLHFAEIQSL----SPNNNQREFDIYINGQTAYSDVSPP-YLG 303 (347)
T ss_pred cChHHHHHhhhcccccccceEEE-ecc-CCCCccEEEEEEEeecccc----cCCCCeEEEEEEECCeEccCccCcc-ccc
Confidence 45999999999854 4566 999 8888 99999999999832 1344689999999999998755442 344
Q ss_pred CCCceEEEEEEEEeeCC-eEEEEEEeccCcCccccCCcccCceEeeEEEEec
Q 006206 547 GSKRALVKTFEANVTNT-IIEIHFFWAGKGTCCIPFQGTYGPLVSAIHASQV 597 (657)
Q Consensus 547 ~~~~~~~~~~~v~v~~~-~l~i~~~~~~~g~~~~~~~~~~~~~~n~iei~~~ 597 (657)
+...|+++||++.++++ .+.|++ +|... . .++|+|||+|||++
T Consensus 304 ~~~~~~~~d~~~~~~~~~~~~isL-----~~t~~--S-~lppiLNalEIy~v 347 (347)
T PF12819_consen 304 ADTVPYYSDYVVNVPDSGFLNISL-----GPTPD--S-TLPPILNALEIYKV 347 (347)
T ss_pred CcceEeecceEEEecCCCEEEEEE-----EeCCC--C-CcCceeEeeeeEeC
Confidence 46788999999999864 466664 44322 2 34799999999985
No 26
>PLN03150 hypothetical protein; Provisional
Probab=99.60 E-value=6.9e-15 Score=165.50 Aligned_cols=158 Identities=29% Similarity=0.498 Sum_probs=123.5
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCCC--CCCCCCCCCCCCC-CCCCCCCCCCCeeeecCCC--CCceeEEEEecCCCCccCC
Q 006206 22 AQTSTDSAEVDALNKLIDYWNLRS--KINLTTIDPCTRN-ASWASENANPRVACDCTSN--SCHITHLKIYALDIMGELP 96 (657)
Q Consensus 22 ~~~~~~~~e~~aL~~~~~~~~~~~--~w~~~~~d~C~~~-~~W~~~~~~~~v~C~~~~~--~~~v~~L~l~~~~l~~~lp 96 (657)
..+.+.++|++||..++..++.+. .|+ .|||... ..| .|+.|..... ...++.|+|+++.+.|.+|
T Consensus 365 ~~~~t~~~~~~aL~~~k~~~~~~~~~~W~---g~~C~p~~~~w------~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip 435 (623)
T PLN03150 365 AESKTLLEEVSALQTLKSSLGLPLRFGWN---GDPCVPQQHPW------SGADCQFDSTKGKWFIDGLGLDNQGLRGFIP 435 (623)
T ss_pred cccccCchHHHHHHHHHHhcCCcccCCCC---CCCCCCccccc------ccceeeccCCCCceEEEEEECCCCCccccCC
Confidence 345678889999999999987653 575 5788532 247 7999963322 2358888888888888888
Q ss_pred hhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCC-C
Q 006206 97 SELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKL-T 175 (657)
Q Consensus 97 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~ 175 (657)
..+.++++|+.|+|++|.+.|.+|..++.+++|+.|+|++|++++.+|..++++++|++|+|++|++++.+|..+..+ .
T Consensus 436 ~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~ 515 (623)
T PLN03150 436 NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLL 515 (623)
T ss_pred HHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccc
Confidence 888888888888888888888888888888888888888888888888888888888888888888888888877653 3
Q ss_pred CCCeeecccccCC
Q 006206 176 SLQQLYIDSSGVT 188 (657)
Q Consensus 176 ~L~~L~Ls~n~l~ 188 (657)
++..+++.+|...
T Consensus 516 ~~~~l~~~~N~~l 528 (623)
T PLN03150 516 HRASFNFTDNAGL 528 (623)
T ss_pred cCceEEecCCccc
Confidence 5566666666543
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.23 E-value=1.1e-11 Score=133.18 Aligned_cols=200 Identities=30% Similarity=0.426 Sum_probs=152.9
Q ss_pred EEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCC-CCcEEEeecccCCCCCchhhcCCCCCCeeecccc
Q 006206 107 DLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLT-KLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSS 185 (657)
Q Consensus 107 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 185 (657)
.+++..+.+. .....+..++.++.|++.+|.++ .+|.....+. +|+.|++++|++. .+|..+..+++|+.|+++.|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 5777777764 23344556678889999999888 6677667774 8999999999886 55566788899999999999
Q ss_pred cCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCChh
Q 006206 186 GVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLD 265 (657)
Q Consensus 186 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 265 (657)
++. .+|.....+++|+.|++++|++. .+|..+.....|++|.+++|... ..+..+..++++..|.+..|..... +.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~ 249 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PE 249 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cc
Confidence 988 45665557888999999999988 66666666677889999988644 4555677888888888777665442 45
Q ss_pred hhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhc
Q 006206 266 FLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSL 315 (657)
Q Consensus 266 ~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l 315 (657)
.+..++++++|++++|.++. ++. ++.+.+++.|++++|.+....|...
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred hhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccchhhh
Confidence 66778889999999999984 444 8888999999999999986666543
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.20 E-value=3.6e-12 Score=125.76 Aligned_cols=246 Identities=21% Similarity=0.282 Sum_probs=123.7
Q ss_pred ccCCCCCCEEEccCCCCCCC----CchhcCCCCCCCeeEcccC---cCCCCCCc-------cccCCCCCcEEEeecccCC
Q 006206 99 LFMLRKLMDLNLGQNVLNGS----IPAEIGQLSNMQYLSLGIN---NFTGRVPT-------ELGNLTKLISLSFSSNNFF 164 (657)
Q Consensus 99 l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n---~l~~~~p~-------~~~~l~~L~~L~Ls~n~l~ 164 (657)
+.....++.|+|++|.|... +...+.+.++|+..++++- ++...+|. .+-.+++|++|+||.|-+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 44455666666666666422 3344555566666666542 11122332 2334556777777776665
Q ss_pred CCCchh----hcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCC--
Q 006206 165 GPLPKE----LGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGP-- 238 (657)
Q Consensus 165 ~~~p~~----l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-- 238 (657)
...+.. +..+..|++|.|.+|.+.-.--..++. .|.+|. .+ .....-++|+++...+|++...
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~-------kk~~~~~~Lrv~i~~rNrlen~ga 174 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VN-------KKAASKPKLRVFICGRNRLENGGA 174 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HH-------hccCCCcceEEEEeeccccccccH
Confidence 443332 344566777777666664211111110 111111 11 1122334555555555555421
Q ss_pred --chhhccCCCCCCeEEcCCCCCCCCC----hhhhhcCCCCCEEEccCcccccC----CcccccCCCCCcEEeccCCCCC
Q 006206 239 --IPRSFRALNKLEDLRIGDLSAEDST----LDFLESQKSLSILSLRNCRVSGK----IPDQLGTFAKLQLLDLSFNKLT 308 (657)
Q Consensus 239 --~~~~l~~l~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~ 308 (657)
+...|...+.|+.+++..|.+.... ...+..+++|+.|||++|-++.. +...++.+++|+.|++++|.+.
T Consensus 175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 2234445556666666666554442 23345566666666666665532 2334455566666666666665
Q ss_pred CCCchhc-----cCCCCCcEEEccCCcCCCCCCccc-----cCCCCceEecccccCC
Q 006206 309 GQIPTSL-----QDLSTLQYLYLGNNNLSGELPVNI-----IAPNLIALDVSYNPLS 355 (657)
Q Consensus 309 ~~~p~~l-----~~l~~L~~L~L~~N~l~~~~p~~~-----~~~~L~~LdLs~N~l~ 355 (657)
..-..+| ...+.|+.|.|.+|.++..--... ..+.|..|+|++|.+.
T Consensus 255 ~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 255 NEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 4332222 224667777777776653211000 1366777777777773
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.20 E-value=2.3e-11 Score=130.88 Aligned_cols=198 Identities=32% Similarity=0.512 Sum_probs=118.2
Q ss_pred CeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCC-CCCeeecccccCCCCCchhccCCCCCcEEEccC
Q 006206 130 QYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLT-SLQQLYIDSSGVTGSIPQEFANLKSLRILWASD 208 (657)
Q Consensus 130 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 208 (657)
..|+++.|.+... +..+..++.++.|++.+|.++ .++.....+. +|+.|++++|++. .+|..+..+++|+.|++++
T Consensus 96 ~~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 96 PSLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred ceeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 3577777776422 333455677888888888887 4555566664 8888888888887 4556677888888888888
Q ss_pred CcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCc
Q 006206 209 NLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIP 288 (657)
Q Consensus 209 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p 288 (657)
|++. .+|......+.|+.|++++|.+. .+|........|++|.+++|... ..+..+.++.++..|.+.+|++. .++
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP 248 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ecc
Confidence 8887 45555556777888888888776 45544444455666666655311 12233444445555555555544 223
Q ss_pred ccccCCCCCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcCCCCCC
Q 006206 289 DQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELP 336 (657)
Q Consensus 289 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 336 (657)
..+..+++++.|++++|+++ .++. +..+.+|+.|++++|.++...|
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred chhccccccceecccccccc-cccc-ccccCccCEEeccCccccccch
Confidence 44444455555555555554 2222 4444555555555555544333
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.19 E-value=7.5e-13 Score=137.73 Aligned_cols=172 Identities=27% Similarity=0.435 Sum_probs=110.0
Q ss_pred eeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeec
Q 006206 81 ITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSS 160 (657)
Q Consensus 81 v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 160 (657)
.+..|++.|.+. ++|..+..+..|+.|.|+.|.+. .+|..++++..|.+|||+.|+++ .+|..+..|+ |+.|.+++
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence 344555555553 55666666666666666666665 56666677777777777777766 5666666665 66777776
Q ss_pred ccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCch
Q 006206 161 NNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIP 240 (657)
Q Consensus 161 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 240 (657)
|+++ .+|+.++.+..|.+|+.+.|.+. .+|..+..+.+|+.|.+..|++. .+|+.+..++ |..||++.|++. .+|
T Consensus 153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iP 227 (722)
T KOG0532|consen 153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLP 227 (722)
T ss_pred Cccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecc
Confidence 6665 55666666666777777776665 45666666667777777777666 4444455443 666777766666 566
Q ss_pred hhccCCCCCCeEEcCCCCCCC
Q 006206 241 RSFRALNKLEDLRIGDLSAED 261 (657)
Q Consensus 241 ~~l~~l~~L~~L~l~~~~~~~ 261 (657)
-.|.+++.|+.|.|.+|.+..
T Consensus 228 v~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hhhhhhhhheeeeeccCCCCC
Confidence 666666666666666665554
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.17 E-value=1.3e-12 Score=135.94 Aligned_cols=174 Identities=27% Similarity=0.423 Sum_probs=111.5
Q ss_pred CCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEE
Q 006206 126 LSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILW 205 (657)
Q Consensus 126 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 205 (657)
+.--...||+.|++. .+|..+..+..|+.+.|+.|.+. .+|..+.++..|.+|+|+.|+++ .+|..+..|+ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 344456788888887 78888887888888888888776 67777888888888888888887 5666666664 77777
Q ss_pred ccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCccccc
Q 006206 206 ASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSG 285 (657)
Q Consensus 206 Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~ 285 (657)
+++|+++ .+|+.++...+|..|+.+.|.+. .+|..++.+.+|+.|.+..|+....+.+.. . -.|..||++.|++.
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~-~-LpLi~lDfScNkis- 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELC-S-LPLIRLDFSCNKIS- 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHh-C-CceeeeecccCcee-
Confidence 8888776 56666777777777777777766 455566666665555555544433322211 1 23444444444444
Q ss_pred CCcccccCCCCCcEEeccCCCCC
Q 006206 286 KIPDQLGTFAKLQLLDLSFNKLT 308 (657)
Q Consensus 286 ~~p~~l~~l~~L~~L~Ls~n~l~ 308 (657)
.+|-.|..|+.|++|-|.+|.|+
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCC
Confidence 44444444444444444444444
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=7.8e-12 Score=126.62 Aligned_cols=208 Identities=22% Similarity=0.203 Sum_probs=101.1
Q ss_pred CCCCCCCeeEcccCcCCCCCC--ccccCCCCCcEEEeecccCCCCCc--hhhcCCCCCCeeecccccCCCCCchhccCCC
Q 006206 124 GQLSNMQYLSLGINNFTGRVP--TELGNLTKLISLSFSSNNFFGPLP--KELGKLTSLQQLYIDSSGVTGSIPQEFANLK 199 (657)
Q Consensus 124 ~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 199 (657)
.++++|+.+.|.++.+. ..+ .....+++++.|||+.|-+..-.+ .....|++|+.|+|+.|.+........
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~---- 192 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT---- 192 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc----
Confidence 34566666666666554 222 133456666666666665442211 223345556666666555542111111
Q ss_pred CCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCC-CchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEc
Q 006206 200 SLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEG-PIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSL 278 (657)
Q Consensus 200 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L 278 (657)
-..+++|+.|.++.|.++. .+-..+..+++|+.|.+..|............+..|++|+|
T Consensus 193 -------------------~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdL 253 (505)
T KOG3207|consen 193 -------------------TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDL 253 (505)
T ss_pred -------------------hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccc
Confidence 0123344444444444431 12222333455555555554322222222333455666666
Q ss_pred cCcccccCC-cccccCCCCCcEEeccCCCCCCC-Cchh-----ccCCCCCcEEEccCCcCCCCCCc---cccCCCCceEe
Q 006206 279 RNCRVSGKI-PDQLGTFAKLQLLDLSFNKLTGQ-IPTS-----LQDLSTLQYLYLGNNNLSGELPV---NIIAPNLIALD 348 (657)
Q Consensus 279 s~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~-~p~~-----l~~l~~L~~L~L~~N~l~~~~p~---~~~~~~L~~Ld 348 (657)
++|++-..- -...+.++.|+.|+++.|.+... .|+. ...+++|++|++..|++. ..+. ...+++|+.|.
T Consensus 254 s~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 254 SNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLR 332 (505)
T ss_pred cCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhh
Confidence 666554211 12345566666666666666532 2221 234567777777777775 2221 12356777777
Q ss_pred cccccCCC
Q 006206 349 VSYNPLSG 356 (657)
Q Consensus 349 Ls~N~l~g 356 (657)
...|.|+.
T Consensus 333 ~~~n~ln~ 340 (505)
T KOG3207|consen 333 ITLNYLNK 340 (505)
T ss_pred cccccccc
Confidence 77777763
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.10 E-value=1.5e-11 Score=121.37 Aligned_cols=233 Identities=19% Similarity=0.210 Sum_probs=133.6
Q ss_pred CceeEEEEecCCCCc----cCChhccCCCCCCEEEccCCC---CCCCCchh-------cCCCCCCCeeEcccCcCCCCCC
Q 006206 79 CHITHLKIYALDIMG----ELPSELFMLRKLMDLNLGQNV---LNGSIPAE-------IGQLSNMQYLSLGINNFTGRVP 144 (657)
Q Consensus 79 ~~v~~L~l~~~~l~~----~lp~~l~~l~~L~~L~Ls~n~---l~~~~p~~-------l~~l~~L~~L~Ls~n~l~~~~p 144 (657)
..++.|++++|.+.. .+.+.+.+.++|+..++++-. +...+|+. +-.+++|++||||+|.+...-+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 358899999998743 356678888999999998742 22245544 4467899999999999874444
Q ss_pred cc----ccCCCCCcEEEeecccCCCCCchhh-------------cCCCCCCeeecccccCCCC----CchhccCCCCCcE
Q 006206 145 TE----LGNLTKLISLSFSSNNFFGPLPKEL-------------GKLTSLQQLYIDSSGVTGS----IPQEFANLKSLRI 203 (657)
Q Consensus 145 ~~----~~~l~~L~~L~Ls~n~l~~~~p~~l-------------~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~ 203 (657)
.. +..++.|++|.|.+|.+...--..+ ..-++|+.+...+|++... +...|...+.|+.
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee 189 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE 189 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence 43 3578999999999997752211111 2234555666555555421 1223444455555
Q ss_pred EEccCCcCCCC----CchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEcc
Q 006206 204 LWASDNLFTGK----IPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLR 279 (657)
Q Consensus 204 L~Ls~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls 279 (657)
+.+..|.+... +...+..+++|+.|||..|-++..-... ....+..+++|+.|+++
T Consensus 190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~--------------------LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA--------------------LAKALSSWPHLRELNLG 249 (382)
T ss_pred EEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH--------------------HHHHhcccchheeeccc
Confidence 55555554311 1123344445555555544443211000 12334455566666666
Q ss_pred CcccccCCcccc-----cCCCCCcEEeccCCCCCCC----CchhccCCCCCcEEEccCCcC
Q 006206 280 NCRVSGKIPDQL-----GTFAKLQLLDLSFNKLTGQ----IPTSLQDLSTLQYLYLGNNNL 331 (657)
Q Consensus 280 ~n~l~~~~p~~l-----~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~N~l 331 (657)
+|.+...-...+ ...|+|+.|.|.+|.++.. +...+...+.|..|+|++|.+
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 665554322222 2256677777777766532 222344566777777777777
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=2e-11 Score=123.72 Aligned_cols=180 Identities=24% Similarity=0.224 Sum_probs=115.5
Q ss_pred CCCCCeeecccccCCCCCc--hhccCCCCCcEEEccCCcCCCC--CchhcCCCCcccEEEccCCCCCCCchhh-ccCCCC
Q 006206 174 LTSLQQLYIDSSGVTGSIP--QEFANLKSLRILWASDNLFTGK--IPEFFGTLTELADLRLQGTLLEGPIPRS-FRALNK 248 (657)
Q Consensus 174 l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~ 248 (657)
+.+|+.+.|.++.... .+ .....|++++.|+|+.|-+... +-.....+++|+.|+++.|++.....+. -..+++
T Consensus 120 ~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 3444444454444431 11 1334455556666665554422 1233445666666666666654322221 125688
Q ss_pred CCeEEcCCCCCCCCCh-hhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCc--hhccCCCCCcEEE
Q 006206 249 LEDLRIGDLSAEDSTL-DFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIP--TSLQDLSTLQYLY 325 (657)
Q Consensus 249 L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~ 325 (657)
|+.|.|+.|.++.... ..+..+|+|+.|+|..|..-........-++.|+.|||++|++-. .+ ...+.++.|+.|+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhh
Confidence 9999999999886543 345689999999999995222222233456889999999999863 33 3467899999999
Q ss_pred ccCCcCCC-CCCcc------ccCCCCceEecccccCC
Q 006206 326 LGNNNLSG-ELPVN------IIAPNLIALDVSYNPLS 355 (657)
Q Consensus 326 L~~N~l~~-~~p~~------~~~~~L~~LdLs~N~l~ 355 (657)
++.|.+.. .+|+. ..+++|++|+++.|++.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 99999875 23332 24699999999999986
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=1.1e-10 Score=112.65 Aligned_cols=133 Identities=26% Similarity=0.316 Sum_probs=85.4
Q ss_pred CCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcE
Q 006206 220 GTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQL 299 (657)
Q Consensus 220 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 299 (657)
..+..|+++||++|.++ .+.++..-+++++.|+++.|.+... ..+..+++|+.||||+|.++ .+..+-..+.++++
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT 356 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence 33445555555555554 3444555556666666666655443 23566777888888888776 45555566778888
Q ss_pred EeccCCCCCCCCchhccCCCCCcEEEccCCcCCC--CCCccccCCCCceEecccccCCCCC
Q 006206 300 LDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSG--ELPVNIIAPNLIALDVSYNPLSGNL 358 (657)
Q Consensus 300 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~~p~~~~~~~L~~LdLs~N~l~g~~ 358 (657)
|.|+.|.|.. ...+..+-+|..||+++|+|.. .+-....+|-|+.|.|.+|++.+.+
T Consensus 357 L~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 357 LKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred eehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 8888888752 2346677788888888888763 1111224677888888888888543
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.99 E-value=3.4e-10 Score=130.47 Aligned_cols=106 Identities=30% Similarity=0.383 Sum_probs=64.4
Q ss_pred CCCCEEEccCCC--CCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCee
Q 006206 103 RKLMDLNLGQNV--LNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQL 180 (657)
Q Consensus 103 ~~L~~L~Ls~n~--l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 180 (657)
+.|++|-+..|. +....+..|..++.|++|||++|.--+.+|..+++|.+|++|+|+.+.+. .+|..+.+|..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 356666666654 33233344666666666666666555566666666666666666666665 566666666666666
Q ss_pred ecccccCCCCCchhccCCCCCcEEEccCC
Q 006206 181 YIDSSGVTGSIPQEFANLKSLRILWASDN 209 (657)
Q Consensus 181 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 209 (657)
++..+.....+|.....|++|++|.+...
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccccccccccchhhhcccccEEEeecc
Confidence 66665554444555555666666666544
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.94 E-value=2e-10 Score=110.86 Aligned_cols=221 Identities=22% Similarity=0.205 Sum_probs=105.5
Q ss_pred CCceeEEEEecCC--------CCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccC
Q 006206 78 SCHITHLKIYALD--------IMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGN 149 (657)
Q Consensus 78 ~~~v~~L~l~~~~--------l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 149 (657)
.|+++.|.+++.. +...+|-.+.-+++|..+.++.+.-. .+-+-...-|.|+++.+.+..++ ..|. +--
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~-~~~~-l~p 257 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQ-DVPS-LLP 257 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchh-heeceeecCchhheeeeeccccc-cccc-ccc
Confidence 3567888776531 12334555666778888888876533 12222223356777777665443 1111 000
Q ss_pred CCCCcEEEeec---ccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCccc
Q 006206 150 LTKLISLSFSS---NNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELA 226 (657)
Q Consensus 150 l~~L~~L~Ls~---n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 226 (657)
...+ .|... ...+|..-..+..-..|+++||++|.++ .+.++..-+|.++.|++++|.+... +.+..+++|+
T Consensus 258 e~~~--~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~ 332 (490)
T KOG1259|consen 258 ETIL--ADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQ 332 (490)
T ss_pred hhhh--cCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccce
Confidence 0000 00000 0001111111111233445555555544 3344444445555555555554411 2244445555
Q ss_pred EEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccC-CcccccCCCCCcEEeccCC
Q 006206 227 DLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGK-IPDQLGTFAKLQLLDLSFN 305 (657)
Q Consensus 227 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n 305 (657)
.|||++|.++ .+...-.++-+++.|.|++|.+.. ...+..+-+|..||+++|++... -...++++|.|+++.|.+|
T Consensus 333 ~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 333 LLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred EeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCC
Confidence 5555555443 111122234445555555543322 23344555677777887777532 1235778888888888888
Q ss_pred CCCC
Q 006206 306 KLTG 309 (657)
Q Consensus 306 ~l~~ 309 (657)
.+.+
T Consensus 410 Pl~~ 413 (490)
T KOG1259|consen 410 PLAG 413 (490)
T ss_pred Cccc
Confidence 8874
No 38
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=98.90 E-value=1.2e-08 Score=106.78 Aligned_cols=112 Identities=29% Similarity=0.419 Sum_probs=77.0
Q ss_pred CChhhhhhccccC--CccccccCCCC--Cc-eEEEEEeeeeeeecCCcCccc-ccceEEEEEECCEEecccCchhhhcCC
Q 006206 474 LDSELYKTARISP--SSLRYYGLGLE--NG-KYRIDLHFAEITMEDSLSWKG-LGRRVFDVYIQGERVLRDLNIKKEAGG 547 (657)
Q Consensus 474 ~p~~ly~t~r~~~--~~l~~~~~~v~--~g-~y~v~lhF~e~~~~~~~~~~~-~~~r~F~V~i~~~~~~~~~di~~~~~~ 547 (657)
.....|+|+|.++ .... |.|++. .| +|+||+||.-.-+... .++. ...-.||++++.... ...++.. .
T Consensus 46 ~~~~~y~taR~F~~g~r~c-Y~l~~~~~~~~~yliRl~F~~gnyd~~-~fs~~~~~~~FdL~~~~n~~-~tV~~~~---~ 119 (347)
T PF12819_consen 46 DSSPPYQTARIFPEGSRNC-YTLPVTPPGGGKYLIRLHFYYGNYDGL-NFSVSSSPPTFDLLLGFNFW-STVNLSN---S 119 (347)
T ss_pred ccccccceEEEcCCCCccE-EEeeccCCCCceEEEEEEecccccccc-ccccccCCcceEEEECCcee-EEEEecC---C
Confidence 4568999999998 4456 999876 33 9999999976652211 0000 123569999987765 2222221 1
Q ss_pred CCceEEEEEEEEee-CCeEEEEEEeccCcCccccCCcccCceEeeEEEEecccC
Q 006206 548 SKRALVKTFEANVT-NTIIEIHFFWAGKGTCCIPFQGTYGPLVSAIHASQVSTG 600 (657)
Q Consensus 548 ~~~~~~~~~~v~v~-~~~l~i~~~~~~~g~~~~~~~~~~~~~~n~iei~~~~~~ 600 (657)
...+++|||.+.++ ++.+.|.|...+. |.+ ||||||||+++-+.
T Consensus 120 ~~~~~~~E~ii~v~~~~~l~vclv~~~~--------g~~-pFIsaiEl~~lp~~ 164 (347)
T PF12819_consen 120 PSSPVVKEFIINVTWSDTLSVCLVPTGS--------GTF-PFISAIELRPLPDS 164 (347)
T ss_pred CcceEEEEEEEEEcCCCcEEEEEEeCCC--------CCC-CceeEEEEEECCcc
Confidence 23689999999999 6899999954433 323 99999999998653
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.90 E-value=8.6e-10 Score=102.46 Aligned_cols=107 Identities=28% Similarity=0.401 Sum_probs=26.1
Q ss_pred CCCCCCEEEccCCCCCCCCchhcC-CCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhh-cCCCCCC
Q 006206 101 MLRKLMDLNLGQNVLNGSIPAEIG-QLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKEL-GKLTSLQ 178 (657)
Q Consensus 101 ~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~ 178 (657)
+..++++|+|.+|.|+. + +.++ .+.+|+.|+|++|.++. ++ .+..++.|++|++++|.++.. .+.+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred ccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCcc-ccchHHhCCcCC
Confidence 33455666666666642 2 2343 35566666666666652 22 355566666666666666532 2222 2455666
Q ss_pred eeecccccCCCC-CchhccCCCCCcEEEccCCcCC
Q 006206 179 QLYIDSSGVTGS-IPQEFANLKSLRILWASDNLFT 212 (657)
Q Consensus 179 ~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~ 212 (657)
+|++++|++... .-..+..+++|+.|+|.+|.++
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 666666655421 1123444555555555555443
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.86 E-value=2.2e-10 Score=123.54 Aligned_cols=244 Identities=28% Similarity=0.333 Sum_probs=127.7
Q ss_pred CCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCee
Q 006206 101 MLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQL 180 (657)
Q Consensus 101 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 180 (657)
.+..++.+.+..|.+. .+-..+..+++|+.|++.+|.+.. +...+..+++|++|+|++|.++...+ +..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhh-hhhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccccc--hhhccchhhh
Confidence 4455566666666665 233346666777777777777763 33335667777777777777764332 4555667777
Q ss_pred ecccccCCCCCchhccCCCCCcEEEccCCcCCCCCc-hhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCC
Q 006206 181 YIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIP-EFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSA 259 (657)
Q Consensus 181 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~ 259 (657)
++++|.+.. ...+..+++|+.+++++|++...-+ . ...+.+|+.+.+.+|.+.... .+..+..+..+++.+|.+
T Consensus 146 ~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccc
Confidence 777777762 2334446677777777777663332 1 355666666666666654221 122222333334444433
Q ss_pred CCCChhhhhcCC--CCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcCCCC---
Q 006206 260 EDSTLDFLESQK--SLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGE--- 334 (657)
Q Consensus 260 ~~~~~~~l~~~~--~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~--- 334 (657)
..... +..+. .|+.+++++|++. ..+..+..+.++..|++.+|++...- .+...+.+..+.+..|.+...
T Consensus 221 ~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 295 (414)
T KOG0531|consen 221 SKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAI 295 (414)
T ss_pred eeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhh
Confidence 32211 11111 2566666666665 23234455566666666666655221 133444555555555554421
Q ss_pred CCc--cccCCCCceEecccccCCCCC
Q 006206 335 LPV--NIIAPNLIALDVSYNPLSGNL 358 (657)
Q Consensus 335 ~p~--~~~~~~L~~LdLs~N~l~g~~ 358 (657)
... ....+.+..+.+..|++....
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 296 SQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred hccccccccccccccccccCcccccc
Confidence 111 112355555566666555433
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.85 E-value=1.7e-09 Score=124.83 Aligned_cols=252 Identities=22% Similarity=0.278 Sum_probs=167.3
Q ss_pred CCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCc--CCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCC
Q 006206 101 MLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINN--FTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQ 178 (657)
Q Consensus 101 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 178 (657)
+....+.+.+.+|.+. .++.... .++|+.|-+..|. +....+..|..++.|+.|||++|.-.+.+|..++.|.+|+
T Consensus 521 ~~~~~rr~s~~~~~~~-~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIE-HIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred chhheeEEEEeccchh-hccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 3456778888888775 3444433 3479999999886 4434444578899999999999887789999999999999
Q ss_pred eeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCC--CCCchhhccCCCCCCeEEcCC
Q 006206 179 QLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLL--EGPIPRSFRALNKLEDLRIGD 256 (657)
Q Consensus 179 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l--~~~~~~~l~~l~~L~~L~l~~ 256 (657)
+|+|+.+.+. .+|..+.+++.|.+|++..+.....+|.....+++|++|.+..... ....-..+..+.+|+.+....
T Consensus 599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred cccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 9999999998 7999999999999999999887667788888899999999977652 223334455566666665533
Q ss_pred CCCCCCChhhhhcCCCCC----EEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccC------CCCCcEEEc
Q 006206 257 LSAEDSTLDFLESQKSLS----ILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQD------LSTLQYLYL 326 (657)
Q Consensus 257 ~~~~~~~~~~l~~~~~L~----~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~------l~~L~~L~L 326 (657)
... .....+..+..|. .+.+.++... ..+..+..+.+|+.|.+.++.+.......... ++++..+..
T Consensus 678 ~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~ 754 (889)
T KOG4658|consen 678 SSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSI 754 (889)
T ss_pred chh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHh
Confidence 222 1112222223322 3333333333 44556778899999999999886433222211 222333333
Q ss_pred cCCcCCCCCCccccCCCCceEecccccCCCCC
Q 006206 327 GNNNLSGELPVNIIAPNLIALDVSYNPLSGNL 358 (657)
Q Consensus 327 ~~N~l~~~~p~~~~~~~L~~LdLs~N~l~g~~ 358 (657)
.++.....+-+..+.++|+.|.+.++..-..+
T Consensus 755 ~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 755 LNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDI 786 (889)
T ss_pred hccccccccchhhccCcccEEEEecccccccC
Confidence 33332222222346789999999988755443
No 42
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.84 E-value=3.4e-09 Score=98.47 Aligned_cols=83 Identities=27% Similarity=0.363 Sum_probs=16.2
Q ss_pred CCCCCcEEEeecccCCCCCchhhc-CCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhc-CCCCccc
Q 006206 149 NLTKLISLSFSSNNFFGPLPKELG-KLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFF-GTLTELA 226 (657)
Q Consensus 149 ~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~ 226 (657)
+...+++|+|.+|.++. + +.++ .+.+|+.|+|++|.++.. +.+..++.|++|++++|+++. +.+.+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred ccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence 44455666666665542 2 1233 345555666666655521 234445555555555555552 22222 2344555
Q ss_pred EEEccCCCCC
Q 006206 227 DLRLQGTLLE 236 (657)
Q Consensus 227 ~L~l~~n~l~ 236 (657)
+|++++|++.
T Consensus 92 ~L~L~~N~I~ 101 (175)
T PF14580_consen 92 ELYLSNNKIS 101 (175)
T ss_dssp EEE-TTS---
T ss_pred EEECcCCcCC
Confidence 5555555443
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.74 E-value=8.1e-10 Score=119.22 Aligned_cols=238 Identities=26% Similarity=0.258 Sum_probs=152.0
Q ss_pred CCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeecc
Q 006206 104 KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYID 183 (657)
Q Consensus 104 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 183 (657)
.++.++...+.+...--. ...+..++.+++..|.+.. +-..+..+.+|+.|++.+|++... ...+..+++|++|+|+
T Consensus 50 ~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls 126 (414)
T KOG0531|consen 50 DLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLS 126 (414)
T ss_pred hhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecc
Confidence 445555555433211111 1456677777888888873 344577889999999999998743 3336778999999999
Q ss_pred cccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCch-hhccCCCCCCeEEcCCCCCCCC
Q 006206 184 SSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIP-RSFRALNKLEDLRIGDLSAEDS 262 (657)
Q Consensus 184 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~ 262 (657)
+|.++... .+..++.|+.|++++|.++.. ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+...
T Consensus 127 ~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 127 FNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI 201 (414)
T ss_pred cccccccc--chhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc
Confidence 99998543 356777799999999998732 345558888899999998874443 2 46677888888887766543
Q ss_pred ChhhhhcCCCCCEEEccCcccccCCcccccCCC--CCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcCCCCCCcccc
Q 006206 263 TLDFLESQKSLSILSLRNCRVSGKIPDQLGTFA--KLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNII 340 (657)
Q Consensus 263 ~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~ 340 (657)
. .+..+..+..+++..|.++..-+ +..+. .|+.+++++|.+. .++..+..+..+..|++.+|++.. +.....
T Consensus 202 ~--~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~-~~~~~~ 275 (414)
T KOG0531|consen 202 E--GLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISN-LEGLER 275 (414)
T ss_pred c--chHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhccccc-cccccc
Confidence 2 22233344444777777653222 12222 2777888888776 343455666777777777777663 221223
Q ss_pred CCCCceEecccccCC
Q 006206 341 APNLIALDVSYNPLS 355 (657)
Q Consensus 341 ~~~L~~LdLs~N~l~ 355 (657)
.+.+..+.+..|++.
T Consensus 276 ~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 276 LPKLSELWLNDNKLA 290 (414)
T ss_pred cchHHHhccCcchhc
Confidence 445555566666654
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.62 E-value=2.4e-08 Score=76.21 Aligned_cols=61 Identities=39% Similarity=0.588 Sum_probs=44.8
Q ss_pred CCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcC
Q 006206 271 KSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNL 331 (657)
Q Consensus 271 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l 331 (657)
++|++|++++|+++...+..|..+++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677777777777755556777777888888887777755566777777777777777764
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.59 E-value=2.3e-08 Score=76.32 Aligned_cols=59 Identities=36% Similarity=0.489 Sum_probs=29.4
Q ss_pred CCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeeccc
Q 006206 104 KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNN 162 (657)
Q Consensus 104 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 162 (657)
+|++|++++|.++...+..|..+++|++|++++|.++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555543333445555555555555555554444445555555555555543
No 46
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=98.55 E-value=5.3e-08 Score=93.15 Aligned_cols=116 Identities=27% Similarity=0.423 Sum_probs=83.3
Q ss_pred ccccccCCcccccCCCccccCCCCCC-CceeEEeecCCceEeeecccccCCCCCCcceeeeccccccCCChhhhhhcccc
Q 006206 407 SFSIKCGGTQIASASGIEFDDDSKTL-EAASFYTSSGNRWAVSNTGNFISNPNGPLYIAQTDSQITGTLDSELYKTARIS 485 (657)
Q Consensus 407 ~~~inCgg~~~~~~~~~~~~~d~~~~-g~~~~~~s~~~~w~~s~~g~~~~~~~~~~~~~~~~~~~~~~~p~~ly~t~r~~ 485 (657)
-..+||||+..++..+..|..|...+ |-++ .++..-.+.++. ...+..+|+|+|+.
T Consensus 61 I~aVncGgdaavd~ygI~f~aD~~~~VGras---------d~G~~l~i~~ra--------------eeed~ily~ter~n 117 (355)
T KOG3593|consen 61 IPAVNCGGDAAVDNYGIRFAADPLEGVGRAS---------DYGMVLGIGCRA--------------EEEDIILYQTERYN 117 (355)
T ss_pred hheeccCChhhhcccceEeeccccccccccC---------CccceeeccccC--------------Chhhhhhhhhcccc
Confidence 46789999998776778887765321 2110 000000011010 12356899999998
Q ss_pred CCccccccCCCCC-ceEEEEEeeeeeeecCCcCcccccceEEEEEEC-CEEecccCchhhhcCCCCceE
Q 006206 486 PSSLRYYGLGLEN-GKYRIDLHFAEITMEDSLSWKGLGRRVFDVYIQ-GERVLRDLNIKKEAGGSKRAL 552 (657)
Q Consensus 486 ~~~l~~~~~~v~~-g~y~v~lhF~e~~~~~~~~~~~~~~r~F~V~i~-~~~~~~~~di~~~~~~~~~~~ 552 (657)
...+. |+.+.+. |.|-+.|.|||.+ ++..++.+|||.+| +..+.++.||+.++|+.+.|.
T Consensus 118 eetFg-yd~pik~dgdyalvlkfaevy------F~~~q~kvfdvrln~sh~vVk~ldi~~~vg~rg~Ah 179 (355)
T KOG3593|consen 118 EETFG-YDVPIKEDGDYALVLKFAEVY------FKTCQHKVFDVRLNCSHCVVKALDIFDQVGDRGKAH 179 (355)
T ss_pred hhhhc-ccccccCCCceehhhhHHHHH------HHhhhhhheeeeeccceeEEeccchhhhcCCCcccc
Confidence 77766 7777754 7999999999998 67788999999999 999999999999999877764
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=2.9e-08 Score=96.20 Aligned_cols=83 Identities=22% Similarity=0.286 Sum_probs=38.0
Q ss_pred CCCCeeEcccCcCCC--CCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeecccccCCC-CCchhccCCCCCcE
Q 006206 127 SNMQYLSLGINNFTG--RVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTG-SIPQEFANLKSLRI 203 (657)
Q Consensus 127 ~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~ 203 (657)
..++.|||.+|.++. .+-..+.+||.|+.|+|+.|++...+...-..+.+|+.|-|.+..+.- .....+..+|.+++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 445555555555541 222223455555555555555543222111233455555555544431 12233445555666
Q ss_pred EEccCC
Q 006206 204 LWASDN 209 (657)
Q Consensus 204 L~Ls~n 209 (657)
|+++.|
T Consensus 151 lHmS~N 156 (418)
T KOG2982|consen 151 LHMSDN 156 (418)
T ss_pred hhhccc
Confidence 666555
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.1e-08 Score=99.20 Aligned_cols=176 Identities=21% Similarity=0.182 Sum_probs=88.5
Q ss_pred CCcEEEeecccCCC-CCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCc-CCCC-CchhcCCCCcccEE
Q 006206 152 KLISLSFSSNNFFG-PLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNL-FTGK-IPEFFGTLTELADL 228 (657)
Q Consensus 152 ~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~-~~~~l~~l~~L~~L 228 (657)
.||+|||++..++. .+...+..+.+|+.|.|.++++...+...+++-.+|+.|+|+.+. ++.. ..-.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 35556665554431 112223445556666666666655555555555566666665542 2211 11223455666666
Q ss_pred EccCCCCCCCchhh-ccC-CCCCCeEEcCCCCCCC--CChhh-hhcCCCCCEEEccCcc-cccCCcccccCCCCCcEEec
Q 006206 229 RLQGTLLEGPIPRS-FRA-LNKLEDLRIGDLSAED--STLDF-LESQKSLSILSLRNCR-VSGKIPDQLGTFAKLQLLDL 302 (657)
Q Consensus 229 ~l~~n~l~~~~~~~-l~~-l~~L~~L~l~~~~~~~--~~~~~-l~~~~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L 302 (657)
+++.|.+..+.-.. +.+ -++|+.|+|+++.-.. ..... ....++|.+|||++|. ++...-..|..++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 66665554332111 111 1355556665542211 12222 2345677777777663 33333334556677777777
Q ss_pred cCCCCCCCCch---hccCCCCCcEEEccCC
Q 006206 303 SFNKLTGQIPT---SLQDLSTLQYLYLGNN 329 (657)
Q Consensus 303 s~n~l~~~~p~---~l~~l~~L~~L~L~~N 329 (657)
+.|.. .+|. .+...|+|.+|+..++
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 77753 3444 2455677777777554
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=2.1e-08 Score=97.19 Aligned_cols=175 Identities=19% Similarity=0.185 Sum_probs=99.1
Q ss_pred CCCeeecccccCCC-CCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCC-CCC-CchhhccCCCCCCeE
Q 006206 176 SLQQLYIDSSGVTG-SIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTL-LEG-PIPRSFRALNKLEDL 252 (657)
Q Consensus 176 ~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l~~L~~L 252 (657)
.||+|||++..++. .+...+..+.+|+.|.|.++++...+...+.+-.+|+.|+++.+. ++. ...-.+.+++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 47777777776652 222335666777777777777776666667777777777776653 221 122245566777777
Q ss_pred EcCCCCCCCCChhh-h-hcCCCCCEEEccCcccc---cCCcccccCCCCCcEEeccCC-CCCCCCchhccCCCCCcEEEc
Q 006206 253 RIGDLSAEDSTLDF-L-ESQKSLSILSLRNCRVS---GKIPDQLGTFAKLQLLDLSFN-KLTGQIPTSLQDLSTLQYLYL 326 (657)
Q Consensus 253 ~l~~~~~~~~~~~~-l-~~~~~L~~L~Ls~n~l~---~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~L 326 (657)
+|+.|......... + .--++|+.|+|+++.-. ..+..-...+++|.+||||.| .++...-..|..++.|++|.|
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 77766554332111 1 11246666777666321 111112245677777777766 344444445666777777777
Q ss_pred cCCcCCCCCCccc----cCCCCceEecccc
Q 006206 327 GNNNLSGELPVNI----IAPNLIALDVSYN 352 (657)
Q Consensus 327 ~~N~l~~~~p~~~----~~~~L~~LdLs~N 352 (657)
+.|.. .+|..+ ..|+|.+||+.++
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 77663 233322 2466777766543
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.32 E-value=1.6e-07 Score=90.02 Aligned_cols=186 Identities=19% Similarity=0.248 Sum_probs=90.6
Q ss_pred ccCCCCCCEEEccCCCCCCC----CchhcCCCCCCCeeEcccCcCC---CCCC-------ccccCCCCCcEEEeecccCC
Q 006206 99 LFMLRKLMDLNLGQNVLNGS----IPAEIGQLSNMQYLSLGINNFT---GRVP-------TELGNLTKLISLSFSSNNFF 164 (657)
Q Consensus 99 l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~---~~~p-------~~~~~l~~L~~L~Ls~n~l~ 164 (657)
+..+..++.+|||+|.|... +...+.+-.+|+..+++.-... ..++ +.+-++|.|+..+||.|-+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 34466677777777776533 2233445566666666543211 1122 23446677777777777776
Q ss_pred CCCchh----hcCCCCCCeeecccccCCCC----Cchhc---------cCCCCCcEEEccCCcCCCCCc----hhcCCCC
Q 006206 165 GPLPKE----LGKLTSLQQLYIDSSGVTGS----IPQEF---------ANLKSLRILWASDNLFTGKIP----EFFGTLT 223 (657)
Q Consensus 165 ~~~p~~----l~~l~~L~~L~Ls~n~l~~~----~p~~l---------~~l~~L~~L~Ls~n~l~~~~~----~~l~~l~ 223 (657)
...|+. +..-+.|++|.+++|.+.-. +...+ .+-|.|+.+....|++..-.. ..+..-.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 555543 34556677777777766411 11111 223556666666665542111 1112223
Q ss_pred cccEEEccCCCCCCC-----chhhccCCCCCCeEEcCCCCCCCCC----hhhhhcCCCCCEEEccCcccc
Q 006206 224 ELADLRLQGTLLEGP-----IPRSFRALNKLEDLRIGDLSAEDST----LDFLESQKSLSILSLRNCRVS 284 (657)
Q Consensus 224 ~L~~L~l~~n~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~Ls~n~l~ 284 (657)
.|+++.+..|.+... +-..+..+.+|+.|+|.+|.++... ...+..++.|+.|.+.+|-++
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 455555555554321 0111233445555555555443321 223334444555555555444
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.25 E-value=3.7e-08 Score=105.90 Aligned_cols=195 Identities=26% Similarity=0.283 Sum_probs=128.2
Q ss_pred CCCCcEEEeecccCCCCC-chhhcCCCCCCeeecccccCCCCCchhccCCC-CCcEEEccCCcCC----------CCCch
Q 006206 150 LTKLISLSFSSNNFFGPL-PKELGKLTSLQQLYIDSSGVTGSIPQEFANLK-SLRILWASDNLFT----------GKIPE 217 (657)
Q Consensus 150 l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~----------~~~~~ 217 (657)
+++++.|.+-.-.-.+.. |-.+..+.+|++|.|.++.+.. ...+..+. .|++|... |.+. |.+..
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~n 159 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISN 159 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhcccccc
Confidence 344455544333222222 4456778899999999988863 22222221 34444322 2111 11111
Q ss_pred hcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcc-cccCCCC
Q 006206 218 FFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPD-QLGTFAK 296 (657)
Q Consensus 218 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~-~l~~l~~ 296 (657)
. ..+.+|...+.+.|++. .+..++.-++.|+.|+|+.|.+... ..+..++.|++|||+.|.++ .+|. ....+ .
T Consensus 160 s-~~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~ 233 (1096)
T KOG1859|consen 160 S-PVWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-K 233 (1096)
T ss_pred c-hhhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-h
Confidence 1 12456788888888887 5666788888999999999877654 47788899999999999988 4554 22333 4
Q ss_pred CcEEeccCCCCCCCCchhccCCCCCcEEEccCCcCCCC--CCccccCCCCceEecccccCC
Q 006206 297 LQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGE--LPVNIIAPNLIALDVSYNPLS 355 (657)
Q Consensus 297 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~--~p~~~~~~~L~~LdLs~N~l~ 355 (657)
|+.|.|++|.++ .+- .+.++++|+.||++.|.|.+- +-..+.+..|..|.|.+|++.
T Consensus 234 L~~L~lrnN~l~-tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 234 LQLLNLRNNALT-TLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred heeeeecccHHH-hhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 999999999987 332 477899999999999988752 222335678889999999986
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.19 E-value=5e-07 Score=86.71 Aligned_cols=206 Identities=15% Similarity=0.126 Sum_probs=138.6
Q ss_pred ceeEEEEecCCCCcc----CChhccCCCCCCEEEccCCCCC---CCCc-------hhcCCCCCCCeeEcccCcCCCCCCc
Q 006206 80 HITHLKIYALDIMGE----LPSELFMLRKLMDLNLGQNVLN---GSIP-------AEIGQLSNMQYLSLGINNFTGRVPT 145 (657)
Q Consensus 80 ~v~~L~l~~~~l~~~----lp~~l~~l~~L~~L~Ls~n~l~---~~~p-------~~l~~l~~L~~L~Ls~n~l~~~~p~ 145 (657)
.++.++|++|.+... +...+.+-.+|+..+++.-... ..++ ..+-.||+|+..+||.|.+....|.
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e 110 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE 110 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence 467899999887543 4455667778888888764321 2233 3456789999999999998876665
Q ss_pred c----ccCCCCCcEEEeecccCCCCCchh-------------hcCCCCCCeeecccccCCCCCc----hhccCCCCCcEE
Q 006206 146 E----LGNLTKLISLSFSSNNFFGPLPKE-------------LGKLTSLQQLYIDSSGVTGSIP----QEFANLKSLRIL 204 (657)
Q Consensus 146 ~----~~~l~~L~~L~Ls~n~l~~~~p~~-------------l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L 204 (657)
. +++-+.|++|.|++|.+...--.- ..+-|.|+......|++..... ..+..-.+|+.+
T Consensus 111 ~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~v 190 (388)
T COG5238 111 ELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEV 190 (388)
T ss_pred HHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeE
Confidence 4 456788999999998764221111 2234789999999998863211 123334689999
Q ss_pred EccCCcCCCC-----CchhcCCCCcccEEEccCCCCCCC----chhhccCCCCCCeEEcCCCCCCCCChhhh------hc
Q 006206 205 WASDNLFTGK-----IPEFFGTLTELADLRLQGTLLEGP----IPRSFRALNKLEDLRIGDLSAEDSTLDFL------ES 269 (657)
Q Consensus 205 ~Ls~n~l~~~-----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~l------~~ 269 (657)
.+..|.|... +-..+..+.+|+.|++..|-++-. +...+...+.|++|++.+|-+.......+ ..
T Consensus 191 ki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~ 270 (388)
T COG5238 191 KIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKF 270 (388)
T ss_pred EeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhc
Confidence 9999987622 112335678999999999988733 33456677889999999997766543322 13
Q ss_pred CCCCCEEEccCccccc
Q 006206 270 QKSLSILSLRNCRVSG 285 (657)
Q Consensus 270 ~~~L~~L~Ls~n~l~~ 285 (657)
.++|+.|-...|.+.+
T Consensus 271 ~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 271 VPNLMPLPGDYNERRG 286 (388)
T ss_pred CCCccccccchhhhcC
Confidence 4666666666665543
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.18 E-value=4.9e-08 Score=104.99 Aligned_cols=179 Identities=24% Similarity=0.269 Sum_probs=110.8
Q ss_pred ChhccCCCCCCEEEccCCCCCCCCchhcCCC-CCCCeeEcccCcCC----------CCCCccccCCCCCcEEEeecccCC
Q 006206 96 PSELFMLRKLMDLNLGQNVLNGSIPAEIGQL-SNMQYLSLGINNFT----------GRVPTELGNLTKLISLSFSSNNFF 164 (657)
Q Consensus 96 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~----------~~~p~~~~~l~~L~~L~Ls~n~l~ 164 (657)
|-.+..+..|++|.|.++++.. ...+..+ ..|+.|-- +|.+. |.+-+.+ -.-.|...+.+.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH
Confidence 4567788888888888887753 1111111 12444322 22211 1111111 1124666677777775
Q ss_pred CCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhcc
Q 006206 165 GPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFR 244 (657)
Q Consensus 165 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 244 (657)
.+...+.-++.|+.|+|++|+++.. +.+..|+.|++|||+.|++. .+|..-..-.+|+.|.+++|.++.. ..+.
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL--~gie 251 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL--RGIE 251 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhh--hhHH
Confidence 5556677778888888888888743 36778888888888888877 4443332223488888888877632 2456
Q ss_pred CCCCCCeEEcCCCCCCCC-ChhhhhcCCCCCEEEccCcccc
Q 006206 245 ALNKLEDLRIGDLSAEDS-TLDFLESQKSLSILSLRNCRVS 284 (657)
Q Consensus 245 ~l~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~Ls~n~l~ 284 (657)
++++|+.||++.|-+... ....+..+..|+.|.|.+|.+-
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 777888888887766544 3455666677788888888764
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=4.8e-07 Score=87.91 Aligned_cols=63 Identities=27% Similarity=0.347 Sum_probs=34.3
Q ss_pred CCCCcEEeccCCCCCCC-CchhccCCCCCcEEEccCCcCCC--CCCccccCCCCceEecccccCCC
Q 006206 294 FAKLQLLDLSFNKLTGQ-IPTSLQDLSTLQYLYLGNNNLSG--ELPVNIIAPNLIALDVSYNPLSG 356 (657)
Q Consensus 294 l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~N~l~~--~~p~~~~~~~L~~LdLs~N~l~g 356 (657)
+|++..+-+..|.+... .-.....++.+..|+|+.|+|.. .+...-.++.|..|.+++|+|..
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 35566666666655422 12234445566667777776653 11111245677777777777664
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.03 E-value=3.7e-07 Score=78.85 Aligned_cols=110 Identities=22% Similarity=0.346 Sum_probs=72.0
Q ss_pred CCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCCCCCcEEEc
Q 006206 247 NKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYL 326 (657)
Q Consensus 247 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 326 (657)
..|...+|++|.+...+...-..++.+++|+|++|.++ .+|..+..++.|+.|++++|.+. ..|..+..+.+|..|+.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 34444455555555555555556667778888888887 67777778888888888888887 56666666778888888
Q ss_pred cCCcCCCCCCccccCCC-CceEecccccCCCCCC
Q 006206 327 GNNNLSGELPVNIIAPN-LIALDVSYNPLSGNLP 359 (657)
Q Consensus 327 ~~N~l~~~~p~~~~~~~-L~~LdLs~N~l~g~~p 359 (657)
.+|.+. ++|-....+. .-..++.++++.+.-+
T Consensus 131 ~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 131 PENARA-EIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred CCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence 877776 5554443332 3344566666665444
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.86 E-value=4.3e-05 Score=79.87 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=32.1
Q ss_pred cCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeecccc
Q 006206 123 IGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSS 185 (657)
Q Consensus 123 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 185 (657)
+..+++++.|++++|.++ .+|. + .++|+.|.++++.-...+|..+. ++|++|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 445677888888877766 4452 1 23577777766433334444331 35555555555
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.83 E-value=9.9e-07 Score=76.24 Aligned_cols=103 Identities=20% Similarity=0.266 Sum_probs=66.7
Q ss_pred eEEEEecCCCCccCCh---hccCCCCCCEEEccCCCCCCCCchhcCC-CCCCCeeEcccCcCCCCCCccccCCCCCcEEE
Q 006206 82 THLKIYALDIMGELPS---ELFMLRKLMDLNLGQNVLNGSIPAEIGQ-LSNMQYLSLGINNFTGRVPTELGNLTKLISLS 157 (657)
Q Consensus 82 ~~L~l~~~~l~~~lp~---~l~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 157 (657)
..++|+.+.+ +.+++ .+....+|+..+|++|.+. .+|..|.. ++-++.|+|++|.++ .+|..+..++.|+.|+
T Consensus 30 h~ldLssc~l-m~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 30 HFLDLSSCQL-MYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhcccccchh-hHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 3455555544 22333 3445556666777777776 45555543 446777777777777 6777777777777777
Q ss_pred eecccCCCCCchhhcCCCCCCeeecccccCC
Q 006206 158 FSSNNFFGPLPKELGKLTSLQQLYIDSSGVT 188 (657)
Q Consensus 158 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 188 (657)
++.|.+. ..|..+..|.+|-.|+..+|.+.
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 7777776 45555666777777777777665
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.70 E-value=0.00022 Score=74.63 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=30.9
Q ss_pred CCCCCcEEEeecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCC
Q 006206 149 NLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDN 209 (657)
Q Consensus 149 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 209 (657)
.+.+++.|++++|.++ .+|. + ..+|+.|.++++.-...+|..+ .++|+.|++++|
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 3566777777777655 3341 1 2357777776644433455433 245666666666
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.65 E-value=6.3e-05 Score=52.66 Aligned_cols=36 Identities=44% Similarity=0.662 Sum_probs=20.6
Q ss_pred CCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcCC
Q 006206 296 KLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLS 332 (657)
Q Consensus 296 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~ 332 (657)
+|++|++++|+|+ .+|..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5566666666665 45545666666666666666655
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.64 E-value=5.5e-05 Score=52.98 Aligned_cols=36 Identities=31% Similarity=0.591 Sum_probs=17.6
Q ss_pred CCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCC
Q 006206 104 KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFT 140 (657)
Q Consensus 104 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 140 (657)
+|++|++++|.++ .+|..+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555554 34444555555555555555554
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.56 E-value=0.00013 Score=67.61 Aligned_cols=86 Identities=21% Similarity=0.149 Sum_probs=36.1
Q ss_pred ccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeecccccCCCCC-chhccCCCCCcEEEccCCcCCCCC---chhcCCC
Q 006206 147 LGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSI-PQEFANLKSLRILWASDNLFTGKI---PEFFGTL 222 (657)
Q Consensus 147 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~l 222 (657)
|..++.|.+|.|++|.++.+-|.--..+++|+.|.|.+|++...- -.-+..+|.|++|.+-+|..+..- --.+..+
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec
Confidence 334444444444444444333332223344444444444443110 112344555555555555443211 1223445
Q ss_pred CcccEEEccC
Q 006206 223 TELADLRLQG 232 (657)
Q Consensus 223 ~~L~~L~l~~ 232 (657)
++|+.||+..
T Consensus 140 p~l~~LDF~k 149 (233)
T KOG1644|consen 140 PSLRTLDFQK 149 (233)
T ss_pred CcceEeehhh
Confidence 5555555544
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.36 E-value=8.5e-05 Score=84.20 Aligned_cols=134 Identities=18% Similarity=0.174 Sum_probs=79.5
Q ss_pred CCCCeeEcccCcCC-CCCCccc-cCCCCCcEEEeecccCCCC-CchhhcCCCCCCeeecccccCCCCCchhccCCCCCcE
Q 006206 127 SNMQYLSLGINNFT-GRVPTEL-GNLTKLISLSFSSNNFFGP-LPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRI 203 (657)
Q Consensus 127 ~~L~~L~Ls~n~l~-~~~p~~~-~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 203 (657)
.+|++|++++.... ..-|..+ ..+|+|+.|.+++-.+... .-....++++|..||+|+++++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 56777777775432 1222223 3477788887776555322 122345677788888888777633 56777777777
Q ss_pred EEccCCcCCC-CCchhcCCCCcccEEEccCCCCCCCc--hh----hccCCCCCCeEEcCCCCCCCC
Q 006206 204 LWASDNLFTG-KIPEFFGTLTELADLRLQGTLLEGPI--PR----SFRALNKLEDLRIGDLSAEDS 262 (657)
Q Consensus 204 L~Ls~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~--~~----~l~~l~~L~~L~l~~~~~~~~ 262 (657)
|.+.+=.+.. ..-..+.++++|+.||++........ .. .-..+++|+.||.++..+...
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 7777655542 12234566778888888776554221 11 123467788888776555443
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.31 E-value=0.00033 Score=65.03 Aligned_cols=106 Identities=21% Similarity=0.124 Sum_probs=76.7
Q ss_pred CCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCC-chhhcCCCCCCeee
Q 006206 103 RKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPL-PKELGKLTSLQQLY 181 (657)
Q Consensus 103 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~ 181 (657)
.+...+||++|++. --..|..+++|.+|.|++|+|+..-|.--..+++|+.|.|.+|.+.... -.-+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 45678889998875 2234667888999999999998666655556788999999998875321 12366788999999
Q ss_pred cccccCCCCC---chhccCCCCCcEEEccCCc
Q 006206 182 IDSSGVTGSI---PQEFANLKSLRILWASDNL 210 (657)
Q Consensus 182 Ls~n~l~~~~---p~~l~~l~~L~~L~Ls~n~ 210 (657)
+-+|..+..- -..+..+|+|+.||...-.
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 9888876321 1336778999999987543
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.29 E-value=0.00016 Score=81.96 Aligned_cols=79 Identities=27% Similarity=0.345 Sum_probs=33.5
Q ss_pred CCcEEEeecccCCC-CCchhhc-CCCCCCeeecccccCCC-CCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEE
Q 006206 152 KLISLSFSSNNFFG-PLPKELG-KLTSLQQLYIDSSGVTG-SIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADL 228 (657)
Q Consensus 152 ~L~~L~Ls~n~l~~-~~p~~l~-~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 228 (657)
+|++|++++..... .-|..++ .||+|+.|.+++-.+.. .+-.-..++|+|..||+|+++++.. ..++++++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 45555555543211 1112222 34555555555444321 1122234445555555555554422 334444444444
Q ss_pred EccC
Q 006206 229 RLQG 232 (657)
Q Consensus 229 ~l~~ 232 (657)
.+.+
T Consensus 201 ~mrn 204 (699)
T KOG3665|consen 201 SMRN 204 (699)
T ss_pred hccC
Confidence 4443
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.17 E-value=0.00017 Score=69.80 Aligned_cols=67 Identities=19% Similarity=0.145 Sum_probs=29.9
Q ss_pred CChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccC--cCCCCCCccccCCCCCcEEEeecccC
Q 006206 95 LPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGIN--NFTGRVPTELGNLTKLISLSFSSNNF 163 (657)
Q Consensus 95 lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~Ls~n~l 163 (657)
+......+..|+.|++.+..++. -..+-.|++|++|.++.| ++++.++.-...+++|++|+|++|++
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred cccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 33333444455555554444431 112233445555555555 44433333333445555555555544
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.07 E-value=0.00025 Score=68.65 Aligned_cols=88 Identities=20% Similarity=0.220 Sum_probs=44.3
Q ss_pred CchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecc--cCCCCCchhhcCCCCCCeeecccccCCCCCchh--
Q 006206 119 IPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSN--NFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQE-- 194 (657)
Q Consensus 119 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-- 194 (657)
+......+..|+.|++.+..++. + ..|..|++|++|.++.| ...+.++.....+++|++|+++.|++.- +++
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLR 110 (260)
T ss_pred cccccccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccc
Confidence 33333445556666665555541 1 23455666666666666 4444444434445666666666666541 222
Q ss_pred -ccCCCCCcEEEccCCc
Q 006206 195 -FANLKSLRILWASDNL 210 (657)
Q Consensus 195 -l~~l~~L~~L~Ls~n~ 210 (657)
+..+.+|..|++.+|.
T Consensus 111 pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCS 127 (260)
T ss_pred hhhhhcchhhhhcccCC
Confidence 2333444455554444
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.89 E-value=0.0021 Score=56.89 Aligned_cols=104 Identities=15% Similarity=0.207 Sum_probs=38.3
Q ss_pred ccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCC
Q 006206 99 LFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQ 178 (657)
Q Consensus 99 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 178 (657)
|.++++|+.+.+.. .+...-...|..+++|+.+.+.++ +...-...|.++++|+.+.+.+ .+.......|..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 44455555555543 233222334555555666655543 3323333455555555555543 22222223344455555
Q ss_pred eeecccccCCCCCchhccCCCCCcEEEcc
Q 006206 179 QLYIDSSGVTGSIPQEFANLKSLRILWAS 207 (657)
Q Consensus 179 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 207 (657)
.+++..+ +...-...|.++ +|+.+.+.
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 5555433 222222333443 45555444
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.78 E-value=0.0029 Score=55.94 Aligned_cols=84 Identities=15% Similarity=0.174 Sum_probs=35.1
Q ss_pred hcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCC
Q 006206 122 EIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSL 201 (657)
Q Consensus 122 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 201 (657)
.|.++++|+.+.+.. .+...-...|.++++|+.+.+..+ +.......|.++++|+.+.+.+ .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 455556666666653 344333445566666666666553 4333333455555566666643 2221222334445555
Q ss_pred cEEEccC
Q 006206 202 RILWASD 208 (657)
Q Consensus 202 ~~L~Ls~ 208 (657)
+.+++..
T Consensus 84 ~~i~~~~ 90 (129)
T PF13306_consen 84 KNIDIPS 90 (129)
T ss_dssp CEEEETT
T ss_pred cccccCc
Confidence 5555543
No 69
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=96.62 E-value=0.0031 Score=43.90 Aligned_cols=37 Identities=32% Similarity=0.583 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHhcCC-C----CCCCCCC-CCCCCCCCCCCCCCCCCCeeee
Q 006206 27 DSAEVDALNKLIDYWNL-R----SKINLTT-IDPCTRNASWASENANPRVACD 73 (657)
Q Consensus 27 ~~~e~~aL~~~~~~~~~-~----~~w~~~~-~d~C~~~~~W~~~~~~~~v~C~ 73 (657)
+++|++||++||..+.. + .+|+... .+||+ | .||+|+
T Consensus 1 ~~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~----W------~GV~Cd 43 (43)
T PF08263_consen 1 PNQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCS----W------SGVTCD 43 (43)
T ss_dssp -HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCC----S------TTEEE-
T ss_pred CcHHHHHHHHHHHhcccccCcccccCCCcCCCCCee----e------ccEEeC
Confidence 36799999999999984 2 7798763 79998 8 799995
No 70
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.27 E-value=0.00029 Score=72.21 Aligned_cols=239 Identities=14% Similarity=0.036 Sum_probs=114.0
Q ss_pred CCCCeeeecCCC-CCceeEEEEecCCCCcc--CChhccCCCCCCEEEccCCC-CCCCCchhc-CCCCCCCeeEcccC-cC
Q 006206 66 ANPRVACDCTSN-SCHITHLKIYALDIMGE--LPSELFMLRKLMDLNLGQNV-LNGSIPAEI-GQLSNMQYLSLGIN-NF 139 (657)
Q Consensus 66 ~~~~v~C~~~~~-~~~v~~L~l~~~~l~~~--lp~~l~~l~~L~~L~Ls~n~-l~~~~p~~l-~~l~~L~~L~Ls~n-~l 139 (657)
.+.+|.+.-... ...++.|.+.++.-.+. +-....+++++++|++.++. ++...-.++ ..+++|++|+|..+ .+
T Consensus 124 v~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~i 203 (483)
T KOG4341|consen 124 VDGGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSI 203 (483)
T ss_pred CCCcceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchh
Confidence 345666653311 14678888877754332 22334567888888888774 333222223 35678888888774 34
Q ss_pred CCCCCc-cccCCCCCcEEEeecccC-CCC-CchhhcCCCCCCeeecccccCCCCCchhc----cCCCCCcEEEccCCcCC
Q 006206 140 TGRVPT-ELGNLTKLISLSFSSNNF-FGP-LPKELGKLTSLQQLYIDSSGVTGSIPQEF----ANLKSLRILWASDNLFT 212 (657)
Q Consensus 140 ~~~~p~-~~~~l~~L~~L~Ls~n~l-~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l----~~l~~L~~L~Ls~n~l~ 212 (657)
+...-. .-..+++|++|+++.+.- ++. +.....+...++.+.+.+|.-.+ ...+ ..+..+..+++.+|...
T Consensus 204 T~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~l 281 (483)
T KOG4341|consen 204 TDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQL 281 (483)
T ss_pred HHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccc
Confidence 422222 123577888888887642 221 11223444555555555432111 1111 23344555555555322
Q ss_pred CCCc--hhcCCCCcccEEEccCCCCCCCc--hhhccCCCCCCeEEcCCCCCC-CCChhhh-hcCCCCCEEEccCccccc-
Q 006206 213 GKIP--EFFGTLTELADLRLQGTLLEGPI--PRSFRALNKLEDLRIGDLSAE-DSTLDFL-ESQKSLSILSLRNCRVSG- 285 (657)
Q Consensus 213 ~~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~l~~~~~~-~~~~~~l-~~~~~L~~L~Ls~n~l~~- 285 (657)
.... ..-..+.+|+.|..+++...+.. ..--.+..+|+.|.++.+... ......+ .+.+.|+.+++.++....
T Consensus 282 TD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d 361 (483)
T KOG4341|consen 282 TDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD 361 (483)
T ss_pred cchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh
Confidence 1111 11134556666666665442221 112234456666666655421 1111111 244555666655554321
Q ss_pred -CCcccccCCCCCcEEeccCCC
Q 006206 286 -KIPDQLGTFAKLQLLDLSFNK 306 (657)
Q Consensus 286 -~~p~~l~~l~~L~~L~Ls~n~ 306 (657)
.+-..-.+++.|+.|.|+++.
T Consensus 362 ~tL~sls~~C~~lr~lslshce 383 (483)
T KOG4341|consen 362 GTLASLSRNCPRLRVLSLSHCE 383 (483)
T ss_pred hhHhhhccCCchhccCChhhhh
Confidence 111112344556666666554
No 71
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=96.21 E-value=0.0092 Score=39.91 Aligned_cols=29 Identities=17% Similarity=0.684 Sum_probs=12.1
Q ss_pred cceEEEEeehhHHHHHHHHHHHhhhcccc
Q 006206 611 VGKIVGITVGCAAALVIISSVFYLWWTKD 639 (657)
Q Consensus 611 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~ 639 (657)
..+.+|+++.+++.+++++++.++||||+
T Consensus 11 vaIa~~VvVPV~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 11 VAIAVGVVVPVGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred EEEEEEEEechHHHHHHHHHHhheEEecc
Confidence 34444555554443222223333344444
No 72
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=95.94 E-value=0.0079 Score=53.18 Aligned_cols=29 Identities=14% Similarity=0.363 Sum_probs=16.9
Q ss_pred cccceEEEEeehhHHHHHHHHHHHhhhcc
Q 006206 609 KHVGKIVGITVGCAAALVIISSVFYLWWT 637 (657)
Q Consensus 609 ~~~~~~~g~~~g~~~~~~~~~~~~~~~~~ 637 (657)
+.+.+|+|++||+.+++++++++++||+|
T Consensus 46 knknIVIGvVVGVGg~ill~il~lvf~~c 74 (154)
T PF04478_consen 46 KNKNIVIGVVVGVGGPILLGILALVFIFC 74 (154)
T ss_pred CCccEEEEEEecccHHHHHHHHHhheeEE
Confidence 34568899999976654444333333333
No 73
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.87 E-value=0.00059 Score=70.01 Aligned_cols=253 Identities=20% Similarity=0.143 Sum_probs=147.6
Q ss_pred CCCCceeEEEEecCC-CCccCChhc-cCCCCCCEEEccCC-CCCCCCch-hcCCCCCCCeeEcccCc-CCCC-CCccccC
Q 006206 76 SNSCHITHLKIYALD-IMGELPSEL-FMLRKLMDLNLGQN-VLNGSIPA-EIGQLSNMQYLSLGINN-FTGR-VPTELGN 149 (657)
Q Consensus 76 ~~~~~v~~L~l~~~~-l~~~lp~~l-~~l~~L~~L~Ls~n-~l~~~~p~-~l~~l~~L~~L~Ls~n~-l~~~-~p~~~~~ 149 (657)
.+.+++++|++.++. ++...-.++ ..+++|++|+|..| .++...-. --..+++|++|+++.+. +++. +-..+.+
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 345678888887764 333322233 35789999999885 45543333 23468999999999884 4431 2223466
Q ss_pred CCCCcEEEeecccCCCCCchhh----cCCCCCCeeecccccC-CCCC-chhccCCCCCcEEEccCCcCCCCCc--hhcCC
Q 006206 150 LTKLISLSFSSNNFFGPLPKEL----GKLTSLQQLYIDSSGV-TGSI-PQEFANLKSLRILWASDNLFTGKIP--EFFGT 221 (657)
Q Consensus 150 l~~L~~L~Ls~n~l~~~~p~~l----~~l~~L~~L~Ls~n~l-~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~~--~~l~~ 221 (657)
+..|+.+.+.+|.= ..-+.+ +....+..+++..+.. +..- ...-..+..|+.|..+++.-.+..+ .-..+
T Consensus 241 ~~~l~~~~~kGC~e--~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~ 318 (483)
T KOG4341|consen 241 CKELEKLSLKGCLE--LELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQH 318 (483)
T ss_pred chhhhhhhhccccc--ccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcC
Confidence 77788887776532 111222 2233455666555533 2111 1112356788999888876432211 22246
Q ss_pred CCcccEEEccCCCC-CCCchhhc-cCCCCCCeEEcCCCCCCCCC-hhhh-hcCCCCCEEEccCcccccCC-----ccccc
Q 006206 222 LTELADLRLQGTLL-EGPIPRSF-RALNKLEDLRIGDLSAEDST-LDFL-ESQKSLSILSLRNCRVSGKI-----PDQLG 292 (657)
Q Consensus 222 l~~L~~L~l~~n~l-~~~~~~~l-~~l~~L~~L~l~~~~~~~~~-~~~l-~~~~~L~~L~Ls~n~l~~~~-----p~~l~ 292 (657)
..+|+.|.+..++. +..--..+ .+.+.|+.+++.++...... ...+ .+.+.|+.|.|++|.+.... ...-.
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c 398 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC 398 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc
Confidence 78899999988763 21111122 35678888888877544332 2222 36788999999988653211 11223
Q ss_pred CCCCCcEEeccCCCCC-CCCchhccCCCCCcEEEccCCc
Q 006206 293 TFAKLQLLDLSFNKLT-GQIPTSLQDLSTLQYLYLGNNN 330 (657)
Q Consensus 293 ~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~N~ 330 (657)
.+..|+.+.|+++.+. +.....+..+++|+.++|-.++
T Consensus 399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred cccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 4567788888887643 3334455666777777766665
No 74
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.72 E-value=0.00052 Score=66.67 Aligned_cols=79 Identities=29% Similarity=0.422 Sum_probs=33.4
Q ss_pred CCCCCcEEEeecccCCCCCchhhcCCCCCCeeecccccCCCCC-chhccCCCCCcEEEccCCcCCCCCc-----hhcCCC
Q 006206 149 NLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSI-PQEFANLKSLRILWASDNLFTGKIP-----EFFGTL 222 (657)
Q Consensus 149 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~~-----~~l~~l 222 (657)
+|+.|+.|.|+-|+++..-| +..+++|++|+|..|.+...- -.-+.++|+|+.|.|..|.-.|.-+ ..+.-+
T Consensus 39 kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~L 116 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVL 116 (388)
T ss_pred hcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHc
Confidence 34444444444444432211 334444555555444443110 0123455555555555554443322 123345
Q ss_pred CcccEEE
Q 006206 223 TELADLR 229 (657)
Q Consensus 223 ~~L~~L~ 229 (657)
|+|++||
T Consensus 117 PnLkKLD 123 (388)
T KOG2123|consen 117 PNLKKLD 123 (388)
T ss_pred ccchhcc
Confidence 5555553
No 75
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.70 E-value=0.00072 Score=65.74 Aligned_cols=79 Identities=22% Similarity=0.285 Sum_probs=35.7
Q ss_pred CCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCC-ChhhhhcCCCCCEEEccCcccccCCcc-----cccCC
Q 006206 221 TLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDS-TLDFLESQKSLSILSLRNCRVSGKIPD-----QLGTF 294 (657)
Q Consensus 221 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~Ls~n~l~~~~p~-----~l~~l 294 (657)
.++.|+.|.|+-|.++..- .+..+++|++|.|..|.+... ....+.++++|+.|.|..|.=.+.-+. .+..+
T Consensus 39 kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~L 116 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVL 116 (388)
T ss_pred hcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHc
Confidence 3444444444444443221 233444444444444444333 234455566666666665544333222 22334
Q ss_pred CCCcEEe
Q 006206 295 AKLQLLD 301 (657)
Q Consensus 295 ~~L~~L~ 301 (657)
|+|+.||
T Consensus 117 PnLkKLD 123 (388)
T KOG2123|consen 117 PNLKKLD 123 (388)
T ss_pred ccchhcc
Confidence 5555554
No 76
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.66 E-value=0.0018 Score=71.41 Aligned_cols=15 Identities=33% Similarity=0.359 Sum_probs=8.8
Q ss_pred cCCCCCcEEeccCCC
Q 006206 292 GTFAKLQLLDLSFNK 306 (657)
Q Consensus 292 ~~l~~L~~L~Ls~n~ 306 (657)
..+++|+.+.+..+.
T Consensus 359 ~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 359 RSCPKLTDLSLSYCG 373 (482)
T ss_pred hcCCCcchhhhhhhh
Confidence 445666666666555
No 77
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=95.48 E-value=0.017 Score=47.85 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=16.3
Q ss_pred cccceEEEEeehhHHHHHHHHHHH
Q 006206 609 KHVGKIVGITVGCAAALVIISSVF 632 (657)
Q Consensus 609 ~~~~~~~g~~~g~~~~~~~~~~~~ 632 (657)
.+.+.|+|++||+++++.+++.++
T Consensus 63 ls~gaiagi~vg~~~~v~~lv~~l 86 (96)
T PTZ00382 63 LSTGAIAGISVAVVAVVGGLVGFL 86 (96)
T ss_pred cccccEEEEEeehhhHHHHHHHHH
Confidence 356789999999876644444333
No 78
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.44 E-value=0.0025 Score=70.22 Aligned_cols=17 Identities=41% Similarity=0.542 Sum_probs=11.6
Q ss_pred hhcCCCCCEEEccCccc
Q 006206 267 LESQKSLSILSLRNCRV 283 (657)
Q Consensus 267 l~~~~~L~~L~Ls~n~l 283 (657)
+..++.|+.+.|..+..
T Consensus 358 ~~~~~~l~~~~l~~~~~ 374 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCGI 374 (482)
T ss_pred HhcCCCcchhhhhhhhc
Confidence 45667777777777663
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.52 E-value=0.00051 Score=74.59 Aligned_cols=36 Identities=33% Similarity=0.321 Sum_probs=18.2
Q ss_pred CCeeEcccCcCCCCCC----ccccCCCCCcEEEeecccCC
Q 006206 129 MQYLSLGINNFTGRVP----TELGNLTKLISLSFSSNNFF 164 (657)
Q Consensus 129 L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~Ls~n~l~ 164 (657)
|..|.|.+|.+..... ..+..++.|+.|++++|.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 5556666666543211 22334555555555555554
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.41 E-value=0.00061 Score=74.03 Aligned_cols=85 Identities=19% Similarity=0.166 Sum_probs=49.7
Q ss_pred CCCcEEEeecccCCCCCch----hhcCCCCCCeeecccccCCCCCc----hhccCC-CCCcEEEccCCcCCCC----Cch
Q 006206 151 TKLISLSFSSNNFFGPLPK----ELGKLTSLQQLYIDSSGVTGSIP----QEFANL-KSLRILWASDNLFTGK----IPE 217 (657)
Q Consensus 151 ~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l-~~L~~L~Ls~n~l~~~----~~~ 217 (657)
..|..|.|.+|.+...... .+...+.|+.|+++.|.+...-- ..+... ..|++|++..|.++.. +.+
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 3477788888877654333 34566778888888888763211 112222 4556666666666532 334
Q ss_pred hcCCCCcccEEEccCCCC
Q 006206 218 FFGTLTELADLRLQGTLL 235 (657)
Q Consensus 218 ~l~~l~~L~~L~l~~n~l 235 (657)
.+.....++.+++..|.+
T Consensus 167 ~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGL 184 (478)
T ss_pred HHhcccchhHHHHHhccc
Confidence 445556666666666655
No 81
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.23 E-value=0.017 Score=33.64 Aligned_cols=18 Identities=39% Similarity=0.796 Sum_probs=7.9
Q ss_pred CCeeEcccCcCCCCCCccc
Q 006206 129 MQYLSLGINNFTGRVPTEL 147 (657)
Q Consensus 129 L~~L~Ls~n~l~~~~p~~~ 147 (657)
|++|||++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444444444444 344333
No 82
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=94.18 E-value=0.26 Score=48.81 Aligned_cols=16 Identities=19% Similarity=0.409 Sum_probs=10.5
Q ss_pred EEEEEECCEEecccCc
Q 006206 525 VFDVYIQGERVLRDLN 540 (657)
Q Consensus 525 ~F~V~i~~~~~~~~~d 540 (657)
.-++.+-|+.+.=+|+
T Consensus 128 el~l~a~~~PI~V~F~ 143 (278)
T PF06697_consen 128 ELSLRASGKPILVDFS 143 (278)
T ss_pred eeeeeccCCcEEEEec
Confidence 4556666777777774
No 83
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.81 E-value=0.025 Score=32.89 Aligned_cols=17 Identities=65% Similarity=0.823 Sum_probs=7.6
Q ss_pred CcEEeccCCCCCCCCchh
Q 006206 297 LQLLDLSFNKLTGQIPTS 314 (657)
Q Consensus 297 L~~L~Ls~n~l~~~~p~~ 314 (657)
|++|||++|+++ .+|..
T Consensus 2 L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp ESEEEETSSEES-EEGTT
T ss_pred ccEEECCCCcCE-eCChh
Confidence 444444444444 34433
No 84
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=92.88 E-value=0.016 Score=49.91 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=18.7
Q ss_pred ccceEEEEeehhHHHHHHHHHHHhhhccccccc
Q 006206 610 HVGKIVGITVGCAAALVIISSVFYLWWTKDSSS 642 (657)
Q Consensus 610 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~ 642 (657)
..++|+||++|+++++++++++++|++||||++
T Consensus 62 s~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 62 SEPAIIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp S-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred cccceeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345778888888777555554454454544443
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.17 E-value=0.0023 Score=60.69 Aligned_cols=85 Identities=16% Similarity=0.203 Sum_probs=42.1
Q ss_pred ccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCC
Q 006206 99 LFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQ 178 (657)
Q Consensus 99 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 178 (657)
+..+...+.||++.|.+. .+-..|.-+..|..|+++.|.+. .+|..++.+..++.+++.+|..+ ..|.+++.+++++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 444555555555555543 22333444445555555555554 44555555555555555555443 4444455555555
Q ss_pred eeeccccc
Q 006206 179 QLYIDSSG 186 (657)
Q Consensus 179 ~L~Ls~n~ 186 (657)
++++..|.
T Consensus 115 ~~e~k~~~ 122 (326)
T KOG0473|consen 115 KNEQKKTE 122 (326)
T ss_pred hhhhccCc
Confidence 55544444
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.97 E-value=0.0075 Score=57.38 Aligned_cols=88 Identities=18% Similarity=0.205 Sum_probs=67.7
Q ss_pred hcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCC
Q 006206 122 EIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSL 201 (657)
Q Consensus 122 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 201 (657)
.+...++.+.||++.|++. .+-..|..++.|..|+++.|++. ..|..++.+..+.++++..|..+ ..|.++..++.+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 4566778889999998876 45556777888888888888875 67778888888888888877776 577777888888
Q ss_pred cEEEccCCcCC
Q 006206 202 RILWASDNLFT 212 (657)
Q Consensus 202 ~~L~Ls~n~l~ 212 (657)
+++++..|.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 87777777654
No 87
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=89.65 E-value=0.12 Score=38.54 Aligned_cols=11 Identities=9% Similarity=0.278 Sum_probs=0.0
Q ss_pred eEEEEeehhHH
Q 006206 613 KIVGITVGCAA 623 (657)
Q Consensus 613 ~~~g~~~g~~~ 623 (657)
+++|+++|+++
T Consensus 10 vlaavIaG~Vv 20 (64)
T PF01034_consen 10 VLAAVIAGGVV 20 (64)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 33444444333
No 88
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.27 E-value=0.25 Score=26.63 Aligned_cols=10 Identities=60% Similarity=0.750 Sum_probs=3.1
Q ss_pred CcEEeccCCC
Q 006206 297 LQLLDLSFNK 306 (657)
Q Consensus 297 L~~L~Ls~n~ 306 (657)
|+.|+|++|+
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3333333333
No 89
>PHA03265 envelope glycoprotein D; Provisional
Probab=85.56 E-value=0.55 Score=47.30 Aligned_cols=21 Identities=10% Similarity=0.325 Sum_probs=9.5
Q ss_pred HHHHHHHhhhccccccccccc
Q 006206 626 VIISSVFYLWWTKDSSSHIRI 646 (657)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~ 646 (657)
+++.+++++.|||||....++
T Consensus 362 v~vg~il~~~~rr~k~~~k~~ 382 (402)
T PHA03265 362 VLVGVILYVCLRRKKELKKSA 382 (402)
T ss_pred hhhhHHHHHHhhhhhhhhhhh
Confidence 333333344456665544444
No 90
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.55 E-value=0.21 Score=46.96 Aligned_cols=32 Identities=38% Similarity=0.304 Sum_probs=12.9
Q ss_pred CCCcEEeccCC-CCCCCCchhccCCCCCcEEEc
Q 006206 295 AKLQLLDLSFN-KLTGQIPTSLQDLSTLQYLYL 326 (657)
Q Consensus 295 ~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~L 326 (657)
++|+.|+|++| +|++.--..+..+++|+.|.|
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l 183 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHL 183 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHh
Confidence 34444444433 333333333344444444443
No 91
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=85.04 E-value=0.37 Score=31.78 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=11.2
Q ss_pred EEEEeehhHHHHHHHHHHHhh
Q 006206 614 IVGITVGCAAALVIISSVFYL 634 (657)
Q Consensus 614 ~~g~~~g~~~~~~~~~~~~~~ 634 (657)
.+|+++|+++++++++++.++
T Consensus 5 ~IaIIv~V~vg~~iiii~~~~ 25 (38)
T PF02439_consen 5 TIAIIVAVVVGMAIIIICMFY 25 (38)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 345566666655555555443
No 92
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.57 E-value=0.13 Score=48.23 Aligned_cols=82 Identities=20% Similarity=0.185 Sum_probs=55.1
Q ss_pred cccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCC-Chhhhh-cCCCCCEEEccCc-ccccCCcccccCCCCCcEE
Q 006206 224 ELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDS-TLDFLE-SQKSLSILSLRNC-RVSGKIPDQLGTFAKLQLL 300 (657)
Q Consensus 224 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~-~~~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L 300 (657)
.++.++-++..+...--+.+.+++.++.|.+.+|..... ..+.+. ..++|+.|+|++| +|++.--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 467788887777666666777778888888777654332 222232 3478888888877 5666666667777888877
Q ss_pred eccCC
Q 006206 301 DLSFN 305 (657)
Q Consensus 301 ~Ls~n 305 (657)
.|.+=
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 76543
No 93
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=82.44 E-value=1.7 Score=41.07 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=14.5
Q ss_pred cccceEEEEeehhHHHHHHHHHHHh
Q 006206 609 KHVGKIVGITVGCAAALVIISSVFY 633 (657)
Q Consensus 609 ~~~~~~~g~~~g~~~~~~~~~~~~~ 633 (657)
....+++|+++|+++++++++++++
T Consensus 35 d~~~I~iaiVAG~~tVILVI~i~v~ 59 (221)
T PF08374_consen 35 DYVKIMIAIVAGIMTVILVIFIVVL 59 (221)
T ss_pred cceeeeeeeecchhhhHHHHHHHHH
Confidence 3456788888887655333333333
No 94
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=82.09 E-value=1.5 Score=46.95 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=18.0
Q ss_pred CcccceEEEEeehhHHHHHHHHHHHh
Q 006206 608 KKHVGKIVGITVGCAAALVIISSVFY 633 (657)
Q Consensus 608 ~~~~~~~~g~~~g~~~~~~~~~~~~~ 633 (657)
..+.++|+||+|+++++|..|+.++.
T Consensus 363 ~LstgaIaGIsvavvvvVgglvGfLc 388 (397)
T PF03302_consen 363 GLSTGAIAGISVAVVVVVGGLVGFLC 388 (397)
T ss_pred cccccceeeeeehhHHHHHHHHHHHh
Confidence 34688999999998776554544433
No 95
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=81.19 E-value=1.4 Score=47.60 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=15.8
Q ss_pred EeeeeeeecCCcCcccccceEEEEEECCEEe
Q 006206 505 LHFAEITMEDSLSWKGLGRRVFDVYIQGERV 535 (657)
Q Consensus 505 lhF~e~~~~~~~~~~~~~~r~F~V~i~~~~~ 535 (657)
|.|.+.. .+..|-=+|-|++||...
T Consensus 271 l~f~~a~------~~~sGLYv~V~~~nghv~ 295 (439)
T PF02480_consen 271 LQFTNAP------ESASGLYVFVVYYNGHVE 295 (439)
T ss_dssp EEESS--------GGG-EEEEEEEEETTEEE
T ss_pred eEecCCC------cccCceEEEEEEECCeee
Confidence 5666654 344566789999998775
No 96
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=81.10 E-value=0.49 Score=35.34 Aligned_cols=15 Identities=33% Similarity=0.237 Sum_probs=0.0
Q ss_pred ccceEEEEeehhHHH
Q 006206 610 HVGKIVGITVGCAAA 624 (657)
Q Consensus 610 ~~~~~~g~~~g~~~~ 624 (657)
-.++|+|++||.+++
T Consensus 11 laavIaG~Vvgll~a 25 (64)
T PF01034_consen 11 LAAVIAGGVVGLLFA 25 (64)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 367888999988765
No 97
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=78.52 E-value=1.8 Score=26.07 Aligned_cols=13 Identities=31% Similarity=0.409 Sum_probs=5.4
Q ss_pred CCcEEEeecccCC
Q 006206 152 KLISLSFSSNNFF 164 (657)
Q Consensus 152 ~L~~L~Ls~n~l~ 164 (657)
+|++|+|++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444443
No 98
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=78.52 E-value=1.8 Score=26.07 Aligned_cols=13 Identities=31% Similarity=0.409 Sum_probs=5.4
Q ss_pred CCcEEEeecccCC
Q 006206 152 KLISLSFSSNNFF 164 (657)
Q Consensus 152 ~L~~L~Ls~n~l~ 164 (657)
+|++|+|++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444443
No 99
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=78.33 E-value=2 Score=25.86 Aligned_cols=14 Identities=50% Similarity=0.629 Sum_probs=7.1
Q ss_pred CCCcEEeccCCCCC
Q 006206 295 AKLQLLDLSFNKLT 308 (657)
Q Consensus 295 ~~L~~L~Ls~n~l~ 308 (657)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555554
No 100
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=78.33 E-value=2 Score=25.86 Aligned_cols=14 Identities=50% Similarity=0.629 Sum_probs=7.1
Q ss_pred CCCcEEeccCCCCC
Q 006206 295 AKLQLLDLSFNKLT 308 (657)
Q Consensus 295 ~~L~~L~Ls~n~l~ 308 (657)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555554
No 101
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=74.00 E-value=0.56 Score=27.70 Aligned_cols=12 Identities=50% Similarity=0.697 Sum_probs=4.1
Q ss_pred CCcEEeccCCCC
Q 006206 296 KLQLLDLSFNKL 307 (657)
Q Consensus 296 ~L~~L~Ls~n~l 307 (657)
+|++|+|++|+|
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 344444444443
No 102
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=73.69 E-value=2 Score=35.96 Aligned_cols=29 Identities=14% Similarity=0.079 Sum_probs=18.1
Q ss_pred ccceEEEEeehhHHHHHHHHHHHhhhccc
Q 006206 610 HVGKIVGITVGCAAALVIISSVFYLWWTK 638 (657)
Q Consensus 610 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~ 638 (657)
....+++.|+|+++++++.++..+...+|
T Consensus 81 p~d~aLp~VIGGLcaL~LaamGA~~LLrR 109 (126)
T PF03229_consen 81 PVDFALPLVIGGLCALTLAAMGAGALLRR 109 (126)
T ss_pred CcccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 34567788888887766655554433333
No 103
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=71.91 E-value=23 Score=35.80 Aligned_cols=13 Identities=23% Similarity=0.450 Sum_probs=7.8
Q ss_pred EEECCEEecccCc
Q 006206 528 VYIQGERVLRDLN 540 (657)
Q Consensus 528 V~i~~~~~~~~~d 540 (657)
+.+-|+..+.+|-
T Consensus 164 Llv~G~l~~~~~G 176 (281)
T PF12768_consen 164 LLVTGSLNLPDFG 176 (281)
T ss_pred EEEEeeEecCCCC
Confidence 3456666666663
No 104
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=70.02 E-value=1.4 Score=39.58 Aligned_cols=29 Identities=28% Similarity=0.359 Sum_probs=0.0
Q ss_pred ccceEEEEeehhHHHHHHHHHHHhhhccc
Q 006206 610 HVGKIVGITVGCAAALVIISSVFYLWWTK 638 (657)
Q Consensus 610 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~ 638 (657)
..+.+|||+||+++++.+++.+++++.||
T Consensus 127 ~T~tLVGIIVGVLlaIG~igGIIivvvRK 155 (162)
T PF05808_consen 127 STVTLVGIIVGVLLAIGFIGGIIIVVVRK 155 (162)
T ss_dssp -----------------------------
T ss_pred ceeeeeeehhhHHHHHHHHhheeeEEeeh
Confidence 45678899998877655555554444444
No 105
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=67.97 E-value=4.9 Score=44.28 Aligned_cols=40 Identities=10% Similarity=0.101 Sum_probs=20.5
Q ss_pred ccCCCCCceEEEEEeeeeeeecCCcCcccccceEEEEE-ECCEEe
Q 006206 492 YGLGLENGKYRIDLHFAEITMEDSLSWKGLGRRVFDVY-IQGERV 535 (657)
Q Consensus 492 ~~~~v~~g~y~v~lhF~e~~~~~~~~~~~~~~r~F~V~-i~~~~~ 535 (657)
|......|+|.|.+-=.--..+. ..+-+-+|-|. .+|+.+
T Consensus 181 ~rRattvGn~tVQmV~~sRl~G~----~nP~EL~YyV~~~~G~pl 221 (684)
T PF12877_consen 181 FRRATTVGNYTVQMVNMSRLEGP----DNPVELTYYVEGQNGKPL 221 (684)
T ss_pred eeccccccceEEEEEEeeeccCC----CCceEEEEEEEcCCCcCC
Confidence 66666667777764322211111 12345566666 677665
No 106
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=67.49 E-value=1.4 Score=36.86 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=1.3
Q ss_pred eehhHHHHHHHHHH--Hhhhcccccc
Q 006206 618 TVGCAAALVIISSV--FYLWWTKDSS 641 (657)
Q Consensus 618 ~~g~~~~~~~~~~~--~~~~~~~~~~ 641 (657)
++|..+++|+|+++ +-+|.+|||+
T Consensus 26 AaGIGiL~VILgiLLliGCWYckRRS 51 (118)
T PF14991_consen 26 AAGIGILIVILGILLLIGCWYCKRRS 51 (118)
T ss_dssp --SSS---------------------
T ss_pred hccceeHHHHHHHHHHHhheeeeecc
Confidence 44444444444333 2246665544
No 107
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=65.52 E-value=2.2 Score=36.56 Aligned_cols=26 Identities=12% Similarity=0.222 Sum_probs=0.0
Q ss_pred eehhHHHHHHHHHHHhhhcccccccc
Q 006206 618 TVGCAAALVIISSVFYLWWTKDSSSH 643 (657)
Q Consensus 618 ~~g~~~~~~~~~~~~~~~~~~~~~~~ 643 (657)
.++++++++.++..+++|||.||++.
T Consensus 84 sal~v~lVl~llsg~lv~rrcrrr~~ 109 (129)
T PF12191_consen 84 SALSVVLVLALLSGFLVWRRCRRREK 109 (129)
T ss_dssp --------------------------
T ss_pred hHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 34444443333333334555454433
No 108
>PF15102 TMEM154: TMEM154 protein family
Probab=64.81 E-value=7.9 Score=34.43 Aligned_cols=14 Identities=14% Similarity=0.218 Sum_probs=5.8
Q ss_pred EEEEeehhHHHHHH
Q 006206 614 IVGITVGCAAALVI 627 (657)
Q Consensus 614 ~~g~~~g~~~~~~~ 627 (657)
++-++|..++++++
T Consensus 58 iLmIlIP~VLLvlL 71 (146)
T PF15102_consen 58 ILMILIPLVLLVLL 71 (146)
T ss_pred EEEEeHHHHHHHHH
Confidence 33444454444333
No 109
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=63.58 E-value=1.6 Score=28.89 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=12.9
Q ss_pred ccceEEEEeehhHHHHHHHHHH
Q 006206 610 HVGKIVGITVGCAAALVIISSV 631 (657)
Q Consensus 610 ~~~~~~g~~~g~~~~~~~~~~~ 631 (657)
..++|+|+++|.++. ++..++
T Consensus 5 ~IaIIv~V~vg~~ii-ii~~~~ 25 (38)
T PF02439_consen 5 TIAIIVAVVVGMAII-IICMFY 25 (38)
T ss_pred hhhHHHHHHHHHHHH-HHHHHH
Confidence 356677777776655 454444
No 110
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=62.07 E-value=2.7 Score=43.36 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=13.7
Q ss_pred eEEEEeehhHHHHHHHHHH-Hhhhcccc
Q 006206 613 KIVGITVGCAAALVIISSV-FYLWWTKD 639 (657)
Q Consensus 613 ~~~g~~~g~~~~~~~~~~~-~~~~~~~~ 639 (657)
.+|-|+||++.++++++++ +++..|||
T Consensus 271 ~~vPIaVG~~La~lvlivLiaYli~Rrr 298 (306)
T PF01299_consen 271 DLVPIAVGAALAGLVLIVLIAYLIGRRR 298 (306)
T ss_pred chHHHHHHHHHHHHHHHHHHhheeEecc
Confidence 4667777766543444333 33333444
No 111
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=62.05 E-value=5.9 Score=37.21 Aligned_cols=13 Identities=46% Similarity=0.749 Sum_probs=6.3
Q ss_pred cceEEEEeehhHH
Q 006206 611 VGKIVGITVGCAA 623 (657)
Q Consensus 611 ~~~~~g~~~g~~~ 623 (657)
.++|+|+++|+++
T Consensus 78 ~~iivgvi~~Vi~ 90 (179)
T PF13908_consen 78 TGIIVGVICGVIA 90 (179)
T ss_pred eeeeeehhhHHHH
Confidence 3455555555443
No 112
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=61.57 E-value=5.7 Score=24.11 Aligned_cols=13 Identities=38% Similarity=0.588 Sum_probs=6.5
Q ss_pred CCcEEEccCCcCC
Q 006206 320 TLQYLYLGNNNLS 332 (657)
Q Consensus 320 ~L~~L~L~~N~l~ 332 (657)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3445555555554
No 113
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=60.74 E-value=32 Score=36.94 Aligned_cols=67 Identities=15% Similarity=0.089 Sum_probs=31.5
Q ss_pred CCCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhc---CCCCCCCeeEcccCcCCCCCCc
Q 006206 77 NSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEI---GQLSNMQYLSLGINNFTGRVPT 145 (657)
Q Consensus 77 ~~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l---~~l~~L~~L~Ls~n~l~~~~p~ 145 (657)
...+++.++++.+-+..+.|..+..=. --+.++.+.++...-..+ ..=..|.+++|+.|.....+|.
T Consensus 163 pnpr~r~~dls~npi~dkvpihl~~p~--~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~ 232 (553)
T KOG4242|consen 163 PNPRARQHDLSPNPIGDKVPIHLPQPG--NPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPR 232 (553)
T ss_pred CcchhhhhccCCCcccccCCccccCCC--CccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchh
Confidence 345678888888766555544332210 014444444432211111 0112356666666665555554
No 114
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=60.36 E-value=9 Score=25.91 Aligned_cols=32 Identities=16% Similarity=0.114 Sum_probs=21.9
Q ss_pred cceEEEEeehhHHHHHHH-HHHHhhhccccccc
Q 006206 611 VGKIVGITVGCAAALVII-SSVFYLWWTKDSSS 642 (657)
Q Consensus 611 ~~~~~g~~~g~~~~~~~~-~~~~~~~~~~~~~~ 642 (657)
..--+++++|+++.++++ ++++++++..+||+
T Consensus 7 ~~~~vaIa~~VvVPV~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 7 NSNTVAIAVGVVVPVGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred CCceEEEEEEEEechHHHHHHHHHHhheEEecc
Confidence 446778888888765554 44456677788875
No 115
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=56.33 E-value=8.4 Score=23.71 Aligned_cols=14 Identities=50% Similarity=0.691 Sum_probs=10.6
Q ss_pred CCCceEecccccCC
Q 006206 342 PNLIALDVSYNPLS 355 (657)
Q Consensus 342 ~~L~~LdLs~N~l~ 355 (657)
++|++|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46778888888775
No 116
>PF15069 FAM163: FAM163 family
Probab=55.71 E-value=10 Score=33.43 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=14.7
Q ss_pred cceEEEEeehhHHHHHHHHHHHhh
Q 006206 611 VGKIVGITVGCAAALVIISSVFYL 634 (657)
Q Consensus 611 ~~~~~g~~~g~~~~~~~~~~~~~~ 634 (657)
+.||.|.+.+.+++++|+++++++
T Consensus 5 TvVItGgILAtVILLcIIaVLCYC 28 (143)
T PF15069_consen 5 TVVITGGILATVILLCIIAVLCYC 28 (143)
T ss_pred eEEEechHHHHHHHHHHHHHHHHH
Confidence 456667666666666666666543
No 117
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=54.23 E-value=4.2 Score=41.01 Aligned_cols=30 Identities=7% Similarity=-0.006 Sum_probs=0.0
Q ss_pred eEEEEeehhHHHHHHHHHHHhhhcccccccc
Q 006206 613 KIVGITVGCAAALVIISSVFYLWWTKDSSSH 643 (657)
Q Consensus 613 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 643 (657)
+|.+++|+++.+ ++.++++++++|||+.++
T Consensus 149 ~IpaVVI~~iLL-IA~iIa~icyrrkR~GK~ 178 (290)
T PF05454_consen 149 FIPAVVIAAILL-IAGIIACICYRRKRKGKM 178 (290)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHH-HHHHHHHHhhhhhhcccc
Confidence 344555544433 344444455555554444
No 118
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=53.84 E-value=11 Score=22.84 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=7.3
Q ss_pred CCCcEEEccCCcCC
Q 006206 319 STLQYLYLGNNNLS 332 (657)
Q Consensus 319 ~~L~~L~L~~N~l~ 332 (657)
.+|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555554
No 119
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=53.53 E-value=6.6 Score=42.74 Aligned_cols=10 Identities=20% Similarity=0.365 Sum_probs=6.3
Q ss_pred EEEEEEEEee
Q 006206 552 LVKTFEANVT 561 (657)
Q Consensus 552 ~~~~~~v~v~ 561 (657)
+.|+|+|.-.
T Consensus 472 FtRtfvv~P~ 481 (585)
T KOG3763|consen 472 FTRTFVVTPR 481 (585)
T ss_pred cceEEEEeeC
Confidence 6677776543
No 120
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=47.75 E-value=6.7 Score=38.84 Aligned_cols=13 Identities=8% Similarity=0.394 Sum_probs=6.7
Q ss_pred hhccccccccccc
Q 006206 634 LWWTKDSSSHIRI 646 (657)
Q Consensus 634 ~~~~~~~~~~~~~ 646 (657)
+|..|||++.-.|
T Consensus 280 iWlyrrRK~swkh 292 (295)
T TIGR01478 280 IWLYRRRKKSWKH 292 (295)
T ss_pred HHHHHhhcccccc
Confidence 3655655554434
No 121
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=47.66 E-value=36 Score=32.24 Aligned_cols=15 Identities=7% Similarity=0.468 Sum_probs=6.8
Q ss_pred HHHHHHhhhcccccc
Q 006206 627 IISSVFYLWWTKDSS 641 (657)
Q Consensus 627 ~~~~~~~~~~~~~~~ 641 (657)
+++++++++++||+|
T Consensus 172 ~~~~~~~~~~~R~~R 186 (189)
T PF14610_consen 172 ALIMYGFFFWNRKKR 186 (189)
T ss_pred HHHHHhhheeeccce
Confidence 334444444555544
No 122
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=45.88 E-value=28 Score=37.34 Aligned_cols=16 Identities=25% Similarity=0.221 Sum_probs=9.0
Q ss_pred CCCceEecccccCCCC
Q 006206 342 PNLIALDVSYNPLSGN 357 (657)
Q Consensus 342 ~~L~~LdLs~N~l~g~ 357 (657)
..+++|++..|++.|.
T Consensus 354 ~R~q~l~~rdnnldge 369 (553)
T KOG4242|consen 354 QRVQVLLQRDNNLDGE 369 (553)
T ss_pred eeeeEeeccccccccc
Confidence 3456666666665544
No 123
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=45.76 E-value=12 Score=30.33 Aligned_cols=9 Identities=33% Similarity=0.519 Sum_probs=3.5
Q ss_pred hhHHHHHHH
Q 006206 620 GCAAALVII 628 (657)
Q Consensus 620 g~~~~~~~~ 628 (657)
|++++++++
T Consensus 49 GG~iLilIi 57 (98)
T PF07204_consen 49 GGLILILII 57 (98)
T ss_pred chhhhHHHH
Confidence 444443333
No 124
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=45.37 E-value=9.6 Score=34.16 Aligned_cols=32 Identities=13% Similarity=0.151 Sum_probs=22.4
Q ss_pred CCcccceEEEEeehhHHHHHHHHHHHhhhcccc
Q 006206 607 DKKHVGKIVGITVGCAAALVIISSVFYLWWTKD 639 (657)
Q Consensus 607 ~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~ 639 (657)
++--+|++||+.++.+ +++++++++|+.++||
T Consensus 48 knIVIGvVVGVGg~il-l~il~lvf~~c~r~kk 79 (154)
T PF04478_consen 48 KNIVIGVVVGVGGPIL-LGILALVFIFCIRRKK 79 (154)
T ss_pred ccEEEEEEecccHHHH-HHHHHhheeEEEeccc
Confidence 3446789999766555 4567777777777877
No 125
>PF15345 TMEM51: Transmembrane protein 51
Probab=44.77 E-value=24 Score=34.00 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=13.4
Q ss_pred ccceEEEEeehhHHHHHHHHHHHhhh
Q 006206 610 HVGKIVGITVGCAAALVIISSVFYLW 635 (657)
Q Consensus 610 ~~~~~~g~~~g~~~~~~~~~~~~~~~ 635 (657)
+...++-+.||+.++++++.+|.-+.
T Consensus 56 Kt~SVAyVLVG~Gv~LLLLSICL~IR 81 (233)
T PF15345_consen 56 KTFSVAYVLVGSGVALLLLSICLSIR 81 (233)
T ss_pred eeEEEEEehhhHHHHHHHHHHHHHHH
Confidence 33344445577766545555554333
No 126
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=44.56 E-value=16 Score=39.87 Aligned_cols=14 Identities=21% Similarity=0.188 Sum_probs=9.0
Q ss_pred CCCEEEccCccccc
Q 006206 272 SLSILSLRNCRVSG 285 (657)
Q Consensus 272 ~L~~L~Ls~n~l~~ 285 (657)
.|++|-|.+|.+..
T Consensus 271 ~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 271 PLEELVLEGNPLCT 284 (585)
T ss_pred CHHHeeecCCcccc
Confidence 45667777776653
No 127
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=43.30 E-value=13 Score=29.68 Aligned_cols=6 Identities=0% Similarity=-0.225 Sum_probs=2.3
Q ss_pred ehhHHH
Q 006206 619 VGCAAA 624 (657)
Q Consensus 619 ~g~~~~ 624 (657)
.+++++
T Consensus 37 ~lvI~~ 42 (94)
T PF05393_consen 37 FLVICG 42 (94)
T ss_pred HHHHHH
Confidence 343433
No 128
>PTZ00370 STEVOR; Provisional
Probab=42.78 E-value=7.5 Score=38.58 Aligned_cols=13 Identities=8% Similarity=0.414 Sum_probs=6.6
Q ss_pred hhccccccccccc
Q 006206 634 LWWTKDSSSHIRI 646 (657)
Q Consensus 634 ~~~~~~~~~~~~~ 646 (657)
.|..|||++.-.|
T Consensus 276 iwlyrrRK~swkh 288 (296)
T PTZ00370 276 IWLYRRRKNSWKH 288 (296)
T ss_pred HHHHHhhcchhHH
Confidence 3655555554333
No 129
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=41.74 E-value=6.9 Score=30.72 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=13.5
Q ss_pred ccceEEEEeehhHHHHHHHHHHHhh
Q 006206 610 HVGKIVGITVGCAAALVIISSVFYL 634 (657)
Q Consensus 610 ~~~~~~g~~~g~~~~~~~~~~~~~~ 634 (657)
+.++.+|+++|=+++.++++.++|+
T Consensus 32 s~g~LaGiV~~D~vlTLLIv~~vy~ 56 (79)
T PF07213_consen 32 SPGLLAGIVAADAVLTLLIVLVVYY 56 (79)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677777655553444444443
No 130
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=41.23 E-value=35 Score=32.47 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=14.9
Q ss_pred cceEEEEee-hhHHHHHHHHHHHhhhcccc
Q 006206 611 VGKIVGITV-GCAAALVIISSVFYLWWTKD 639 (657)
Q Consensus 611 ~~~~~g~~~-g~~~~~~~~~~~~~~~~~~~ 639 (657)
.+++|++++ |++.+++++++.+++.++||
T Consensus 99 ~~~lI~lv~~g~~lLla~~~~~~Y~~~~Rr 128 (202)
T PF06365_consen 99 YPTLIALVTSGSFLLLAILLGAGYCCHQRR 128 (202)
T ss_pred ceEEEehHHhhHHHHHHHHHHHHHHhhhhc
Confidence 346777665 44444444444444444444
No 131
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=40.92 E-value=22 Score=33.32 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=15.0
Q ss_pred cceEEEEeehhHHHHHHHHHH
Q 006206 611 VGKIVGITVGCAAALVIISSV 631 (657)
Q Consensus 611 ~~~~~g~~~g~~~~~~~~~~~ 631 (657)
+.++++++||+++++++++++
T Consensus 74 ~~~~~~iivgvi~~Vi~Iv~~ 94 (179)
T PF13908_consen 74 IYFITGIIVGVICGVIAIVVL 94 (179)
T ss_pred ccceeeeeeehhhHHHHHHHh
Confidence 457889999988876655443
No 132
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=37.74 E-value=6.3 Score=40.06 Aligned_cols=7 Identities=0% Similarity=-0.073 Sum_probs=2.8
Q ss_pred hcccccc
Q 006206 635 WWTKDSS 641 (657)
Q Consensus 635 ~~~~~~~ 641 (657)
|+-||++
T Consensus 279 LRYRRKK 285 (299)
T PF02009_consen 279 LRYRRKK 285 (299)
T ss_pred HHHHHHh
Confidence 4444433
No 133
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=36.30 E-value=40 Score=29.83 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=11.1
Q ss_pred ceEEEEeehhHHHHHHH
Q 006206 612 GKIVGITVGCAAALVII 628 (657)
Q Consensus 612 ~~~~g~~~g~~~~~~~~ 628 (657)
.+|+|+++|.+.++.++
T Consensus 61 tAIaGIVfgiVfimgvv 77 (155)
T PF10873_consen 61 TAIAGIVFGIVFIMGVV 77 (155)
T ss_pred ceeeeeehhhHHHHHHH
Confidence 46888888876654443
No 134
>PF12669 P12: Virus attachment protein p12 family
Probab=35.99 E-value=30 Score=25.69 Aligned_cols=7 Identities=14% Similarity=0.249 Sum_probs=3.0
Q ss_pred eehhHHH
Q 006206 618 TVGCAAA 624 (657)
Q Consensus 618 ~~g~~~~ 624 (657)
+||++++
T Consensus 3 II~~Ii~ 9 (58)
T PF12669_consen 3 IIGIIIL 9 (58)
T ss_pred eHHHHHH
Confidence 3444443
No 135
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=31.21 E-value=30 Score=23.33 Aligned_cols=6 Identities=0% Similarity=-0.169 Sum_probs=2.4
Q ss_pred cccccc
Q 006206 639 DSSSHI 644 (657)
Q Consensus 639 ~~~~~~ 644 (657)
|++.+.
T Consensus 36 Rkr~l~ 41 (43)
T PF08114_consen 36 RKRALQ 41 (43)
T ss_pred HHHHHh
Confidence 444333
No 136
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=30.19 E-value=15 Score=30.21 Aligned_cols=16 Identities=19% Similarity=0.277 Sum_probs=9.6
Q ss_pred cccceEEEEeehhHHH
Q 006206 609 KHVGKIVGITVGCAAA 624 (657)
Q Consensus 609 ~~~~~~~g~~~g~~~~ 624 (657)
+++...||+++++++.
T Consensus 15 ~sW~~LVGVv~~al~~ 30 (102)
T PF15176_consen 15 RSWPFLVGVVVTALVT 30 (102)
T ss_pred cccHhHHHHHHHHHHH
Confidence 4566666766665554
No 137
>TIGR03778 VPDSG_CTERM VPDSG-CTERM exosortase interaction domain. Through in silico analysis, we previously described the PEP-CTERM/exosortase system (PubMed:16930487). This model describes a PEP-CTERM-like variant C-terminal protein sorting signal, as found at the C-terminus of twenty otherwise unrelated proteins in Verrucomicrobiae bacterium DG1235. The variant motif, VPDSG, seems an intermediate between the VPEP motif (TIGR02595) of typical exosortase systems and the classical LPXTG of sortase in Gram-positive bacteria.
Probab=29.70 E-value=53 Score=19.97 Aligned_cols=14 Identities=7% Similarity=-0.081 Sum_probs=6.6
Q ss_pred HHHHHHHhhhcccc
Q 006206 626 VIISSVFYLWWTKD 639 (657)
Q Consensus 626 ~~~~~~~~~~~~~~ 639 (657)
..+++.+++.+|||
T Consensus 11 l~~~l~~l~~~rRr 24 (26)
T TIGR03778 11 LGLGLLGLLGLRRR 24 (26)
T ss_pred HHHHHHHHHHHhhc
Confidence 34444444445554
No 138
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=29.38 E-value=31 Score=24.02 Aligned_cols=16 Identities=31% Similarity=0.370 Sum_probs=11.0
Q ss_pred CccchhHHHHHHHHHH
Q 006206 1 MELLRPSLLLTVSLSL 16 (657)
Q Consensus 1 m~~~~~~~l~~~~~~~ 16 (657)
|++.||.+++.+++.+
T Consensus 1 ~kk~rwiili~iv~~C 16 (47)
T PRK10299 1 MKKFRWVVLVVVVLAC 16 (47)
T ss_pred CceeeehHHHHHHHHH
Confidence 8999998764444444
No 139
>PF05083 LST1: LST-1 protein; InterPro: IPR007775 B144/LST1 is a gene encoded in the human major histocompatibility complex that produces multiple forms of alternatively spliced mRNA and encodes peptides fewer than 100 amino acids in length. B144/LST1 is strongly expressed in dendritic cells. Transfection of B144/LST1 into a variety of cells induces morphologic changes including the production of long, thin filopodia []. A possible role in modulating immune responses. Induces morphological changes including production of filopodia and microspikes when overexpressed in a variety of cell types and may be involved in dendritic cell maturation. Isoform 1 and isoform 2 have an inhibitory effect on lymphocyte proliferation [, ]. ; GO: 0000902 cell morphogenesis, 0006955 immune response, 0016020 membrane
Probab=28.03 E-value=41 Score=25.63 Aligned_cols=21 Identities=10% Similarity=0.037 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhhcccccccc
Q 006206 623 AALVIISSVFYLWWTKDSSSH 643 (657)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~ 643 (657)
.++|+++.++++|..||.+++
T Consensus 6 ll~vvll~~clC~lsrRvkrL 26 (74)
T PF05083_consen 6 LLAVVLLSACLCRLSRRVKRL 26 (74)
T ss_pred hHHHHHHHHHHHHHHhhhhhc
Confidence 344445555666766665543
No 140
>PF10389 CoatB: Bacteriophage coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 2IFO_A.
Probab=27.09 E-value=46 Score=23.34 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=9.6
Q ss_pred ehhHHHHHHHHHHHhhhccc
Q 006206 619 VGCAAALVIISSVFYLWWTK 638 (657)
Q Consensus 619 ~g~~~~~~~~~~~~~~~~~~ 638 (657)
+|+.++.+++.+.++-|.||
T Consensus 25 ig~avL~v~V~i~v~kwiRr 44 (46)
T PF10389_consen 25 IGGAVLGVIVGIAVYKWIRR 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45555544444445545443
No 141
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=27.09 E-value=54 Score=27.14 Aligned_cols=13 Identities=38% Similarity=0.437 Sum_probs=5.9
Q ss_pred CccchhHHHHHHHH
Q 006206 1 MELLRPSLLLTVSL 14 (657)
Q Consensus 1 m~~~~~~~l~~~~~ 14 (657)
|. ++.++||.++|
T Consensus 1 Ma-SK~~llL~l~L 13 (95)
T PF07172_consen 1 MA-SKAFLLLGLLL 13 (95)
T ss_pred Cc-hhHHHHHHHHH
Confidence 66 44444443333
No 142
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=26.41 E-value=52 Score=33.30 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=9.6
Q ss_pred ehhHHHHHHHHHHHhhhccc
Q 006206 619 VGCAAALVIISSVFYLWWTK 638 (657)
Q Consensus 619 ~g~~~~~~~~~~~~~~~~~~ 638 (657)
+++++++++++++.++|+|-
T Consensus 205 ~~cvaG~aAliva~~cW~Rl 224 (341)
T PF06809_consen 205 VCCVAGAAALIVAGYCWYRL 224 (341)
T ss_pred HHHHHHHHHHHHhhheEEEe
Confidence 33444444445555556543
No 143
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.21 E-value=71 Score=23.91 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=14.2
Q ss_pred ccceEEEEeehhHHHHHHHHHH
Q 006206 610 HVGKIVGITVGCAAALVIISSV 631 (657)
Q Consensus 610 ~~~~~~g~~~g~~~~~~~~~~~ 631 (657)
+-++||-++||.+++++++.-.
T Consensus 11 nPGlIVLlvV~g~ll~flvGny 32 (69)
T PF04689_consen 11 NPGLIVLLVVAGLLLVFLVGNY 32 (69)
T ss_pred CCCeEEeehHHHHHHHHHHHHH
Confidence 4568888888877665444333
No 144
>PF15117 UPF0697: Uncharacterised protein family UPF0697
Probab=22.77 E-value=54 Score=26.06 Aligned_cols=19 Identities=16% Similarity=0.529 Sum_probs=14.4
Q ss_pred HhhhcccccccccccccCC
Q 006206 632 FYLWWTKDSSSHIRIFTDS 650 (657)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~ 650 (657)
.|++.||.|++..|+|+-.
T Consensus 31 l~~YarrNKrkImRifs~p 49 (99)
T PF15117_consen 31 LFMYARRNKRKIMRIFSVP 49 (99)
T ss_pred HHHhhhhcCceEEEEEecC
Confidence 4456788888899999844
No 145
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=22.33 E-value=49 Score=27.44 Aligned_cols=22 Identities=14% Similarity=0.160 Sum_probs=9.9
Q ss_pred cceEEEEeehhHHHHHHHHHHHh
Q 006206 611 VGKIVGITVGCAAALVIISSVFY 633 (657)
Q Consensus 611 ~~~~~g~~~g~~~~~~~~~~~~~ 633 (657)
.++.||+++++.++ +.+++..|
T Consensus 69 agi~vg~~~~v~~l-v~~l~w~f 90 (96)
T PTZ00382 69 AGISVAVVAVVGGL-VGFLCWWF 90 (96)
T ss_pred EEEEeehhhHHHHH-HHHHhhee
Confidence 34455555443333 44444544
No 146
>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]
Probab=21.51 E-value=1e+02 Score=32.48 Aligned_cols=55 Identities=20% Similarity=0.440 Sum_probs=28.2
Q ss_pred cceEEEEEECCEEecccCchhhhc----CCCCceEEEEEEEEeeCCeEEEEEEeccCcC
Q 006206 522 GRRVFDVYIQGERVLRDLNIKKEA----GGSKRALVKTFEANVTNTIIEIHFFWAGKGT 576 (657)
Q Consensus 522 ~~r~F~V~i~~~~~~~~~di~~~~----~~~~~~~~~~~~v~v~~~~l~i~~~~~~~g~ 576 (657)
|+..-++|++-..+.+-+-+.++- .|.-.-|...|.+.|..+.-.++|.|-+.|+
T Consensus 18 ~~~~ln~fls~~Ev~RliGv~AElyYVr~g~Is~Yal~F~~~Vpani~~lsFTW~a~~~ 76 (563)
T KOG1024|consen 18 GQAHLNIFLSLHEVLRLIGVSAELYYVREGAISDYALNFAVPVPANISDLSFTWQADHP 76 (563)
T ss_pred CCCceEEEecHHHHHHHhCcccEEeeeccCchhhhhheeceeccccccceEEEEecCCc
Confidence 344455566555554444444331 1122334455666666555566677766654
No 147
>PF15102 TMEM154: TMEM154 protein family
Probab=21.42 E-value=30 Score=30.89 Aligned_cols=22 Identities=5% Similarity=0.043 Sum_probs=12.1
Q ss_pred cceEEEEeehhHHHHHHHHHHHh
Q 006206 611 VGKIVGITVGCAAALVIISSVFY 633 (657)
Q Consensus 611 ~~~~~g~~~g~~~~~~~~~~~~~ 633 (657)
..++|..++++++++ +++++++
T Consensus 59 LmIlIP~VLLvlLLl-~vV~lv~ 80 (146)
T PF15102_consen 59 LMILIPLVLLVLLLL-SVVCLVI 80 (146)
T ss_pred EEEeHHHHHHHHHHH-HHHHhee
Confidence 345666677766554 4444444
No 148
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=21.16 E-value=32 Score=37.28 Aligned_cols=12 Identities=17% Similarity=0.360 Sum_probs=7.6
Q ss_pred CceEEEEEeeee
Q 006206 498 NGKYRIDLHFAE 509 (657)
Q Consensus 498 ~g~y~v~lhF~e 509 (657)
.|-|.+.+++.+
T Consensus 281 sGLYv~V~~~ng 292 (439)
T PF02480_consen 281 SGLYVFVVYYNG 292 (439)
T ss_dssp -EEEEEEEEETT
T ss_pred CceEEEEEEECC
Confidence 467777776655
No 149
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=21.06 E-value=5.2e+02 Score=21.92 Aligned_cols=67 Identities=15% Similarity=0.344 Sum_probs=38.6
Q ss_pred cc-CCCCC-ceEEEEEeeeeeeecCCcCcccccceEEEEEECC--EEecccCchhhhcCCCCceEEEEEEEEeeCCeEEE
Q 006206 492 YG-LGLEN-GKYRIDLHFAEITMEDSLSWKGLGRRVFDVYIQG--ERVLRDLNIKKEAGGSKRALVKTFEANVTNTIIEI 567 (657)
Q Consensus 492 ~~-~~v~~-g~y~v~lhF~e~~~~~~~~~~~~~~r~F~V~i~~--~~~~~~~di~~~~~~~~~~~~~~~~v~v~~~~l~i 567 (657)
|. +.++. |.|.+++.++... +...++|+++| -.....+++.. +|+...-......|....|.-.|
T Consensus 36 ~~~Vd~~~~g~y~~~~~~a~~~----------~~~~~~l~id~~~g~~~~~~~~~~-tg~w~~~~~~~~~v~l~~G~h~i 104 (125)
T PF03422_consen 36 YNNVDVPEAGTYTLTIRYANGG----------GGGTIELRIDGPDGTLIGTVSLPP-TGGWDTWQTVSVSVKLPAGKHTI 104 (125)
T ss_dssp EEEEEESSSEEEEEEEEEEESS----------SSEEEEEEETTTTSEEEEEEEEE--ESSTTEEEEEEEEEEEESEEEEE
T ss_pred EEEEeeCCCceEEEEEEEECCC----------CCcEEEEEECCCCCcEEEEEEEcC-CCCccccEEEEEEEeeCCCeeEE
Confidence 54 56654 5999987775542 22789999999 34446676633 55444322233334444566555
Q ss_pred EE
Q 006206 568 HF 569 (657)
Q Consensus 568 ~~ 569 (657)
.|
T Consensus 105 ~l 106 (125)
T PF03422_consen 105 YL 106 (125)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 150
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=20.46 E-value=57 Score=28.86 Aligned_cols=20 Identities=30% Similarity=0.589 Sum_probs=16.3
Q ss_pred ccccccCCCCCceEEEEEee
Q 006206 488 SLRYYGLGLENGKYRIDLHF 507 (657)
Q Consensus 488 ~l~~~~~~v~~g~y~v~lhF 507 (657)
+-.+|.|.+.||.|.|.|.-
T Consensus 45 ~~G~Ys~~~epG~Y~V~l~~ 64 (134)
T PF08400_consen 45 EAGEYSFDVEPGVYRVTLKV 64 (134)
T ss_pred CCceEEEEecCCeEEEEEEE
Confidence 34459999999999999853
Done!