Query 006206
Match_columns 657
No_of_seqs 655 out of 5585
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 18:51:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006206.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006206hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 2.6E-39 8.7E-44 335.1 17.7 298 25-357 2-307 (313)
2 4eco_A Uncharacterized protein 100.0 5.7E-39 1.9E-43 364.5 19.7 340 26-377 27-501 (636)
3 3rgz_A Protein brassinosteroid 100.0 2.9E-38 1E-42 366.6 25.1 336 22-377 5-381 (768)
4 3rgz_A Protein brassinosteroid 100.0 3.6E-38 1.2E-42 365.9 23.3 306 78-388 317-723 (768)
5 4ecn_A Leucine-rich repeat pro 100.0 4.6E-38 1.6E-42 363.7 23.9 339 24-377 264-741 (876)
6 3v47_A TOLL-like receptor 5B a 100.0 1.4E-35 4.9E-40 323.5 23.0 300 79-378 30-409 (455)
7 2id5_A Lingo-1, leucine rich r 100.0 1E-33 3.6E-38 310.8 24.4 302 78-379 31-335 (477)
8 4eco_A Uncharacterized protein 100.0 4.5E-34 1.5E-38 324.2 17.7 290 92-395 196-538 (636)
9 1ogq_A PGIP-2, polygalacturona 100.0 6.6E-34 2.3E-38 294.4 13.2 249 103-378 50-305 (313)
10 3v47_A TOLL-like receptor 5B a 100.0 5.6E-33 1.9E-37 303.0 20.0 284 76-359 51-412 (455)
11 3t6q_A CD180 antigen; protein- 100.0 4.4E-32 1.5E-36 306.9 23.6 297 80-378 255-561 (606)
12 2z81_A CD282 antigen, TOLL-lik 100.0 8.1E-32 2.8E-36 301.0 25.1 139 79-217 26-166 (549)
13 4ecn_A Leucine-rich repeat pro 100.0 4.9E-32 1.7E-36 313.4 23.0 309 76-393 445-806 (876)
14 2z7x_B TOLL-like receptor 1, v 100.0 8.4E-32 2.9E-36 298.9 23.8 291 79-377 21-434 (520)
15 3vq2_A TLR4, TOLL-like recepto 100.0 1.7E-31 5.7E-36 302.2 25.5 136 78-213 31-167 (606)
16 2id5_A Lingo-1, leucine rich r 100.0 1.5E-31 5.3E-36 293.5 23.8 287 76-362 53-340 (477)
17 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4E-31 1.4E-35 296.2 25.5 137 79-221 52-193 (562)
18 3t6q_A CD180 antigen; protein- 100.0 3.3E-31 1.1E-35 299.8 24.7 299 78-377 32-389 (606)
19 3j0a_A TOLL-like receptor 5; m 100.0 6.2E-31 2.1E-35 308.2 27.3 301 78-378 23-376 (844)
20 3o6n_A APL1; leucine-rich repe 100.0 4.4E-31 1.5E-35 282.1 23.6 264 78-355 44-308 (390)
21 3vq2_A TLR4, TOLL-like recepto 100.0 4.3E-31 1.5E-35 298.8 24.2 301 76-377 53-534 (606)
22 3oja_B Anopheles plasmodium-re 100.0 9.6E-31 3.3E-35 295.0 24.6 301 45-356 10-338 (597)
23 2z7x_B TOLL-like receptor 1, v 100.0 1.8E-30 6.3E-35 288.1 25.4 292 76-377 42-457 (520)
24 1xku_A Decorin; proteoglycan, 100.0 6.7E-30 2.3E-34 266.5 26.9 286 80-375 32-330 (330)
25 1ziw_A TOLL-like receptor 3; i 100.0 3.9E-30 1.3E-34 295.0 27.2 300 78-377 24-366 (680)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7E-30 2.4E-34 286.1 26.9 292 76-377 73-510 (562)
27 2z63_A TOLL-like receptor 4, v 100.0 2.6E-30 8.8E-35 290.1 23.2 133 80-212 29-162 (570)
28 4fcg_A Uncharacterized protein 100.0 7.7E-31 2.6E-35 273.1 16.8 269 25-332 23-314 (328)
29 2ft3_A Biglycan; proteoglycan, 100.0 4.7E-30 1.6E-34 267.9 22.6 285 80-375 34-331 (332)
30 2z63_A TOLL-like receptor 4, v 100.0 3.2E-30 1.1E-34 289.4 22.8 299 77-377 50-507 (570)
31 4g8a_A TOLL-like receptor 4; l 100.0 5.7E-30 2E-34 290.7 24.8 139 78-216 51-190 (635)
32 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-29 4.6E-34 290.5 25.2 296 81-377 250-597 (680)
33 3j0a_A TOLL-like receptor 5; m 100.0 2.2E-29 7.5E-34 295.1 27.0 299 76-377 45-394 (844)
34 1xku_A Decorin; proteoglycan, 100.0 1.2E-28 4E-33 257.1 26.4 269 78-353 51-330 (330)
35 2z80_A TOLL-like receptor 2, v 100.0 1.1E-29 3.7E-34 267.5 18.4 263 94-359 45-318 (353)
36 3o6n_A APL1; leucine-rich repe 100.0 4.8E-29 1.6E-33 266.3 23.5 264 100-377 42-308 (390)
37 3oja_B Anopheles plasmodium-re 100.0 6E-29 2E-33 280.3 23.9 271 101-378 49-338 (597)
38 4fmz_A Internalin; leucine ric 100.0 3.3E-28 1.1E-32 255.4 27.2 281 78-378 43-325 (347)
39 2ft3_A Biglycan; proteoglycan, 100.0 1.1E-28 3.7E-33 257.6 23.1 268 78-353 53-331 (332)
40 4fmz_A Internalin; leucine ric 100.0 8.1E-28 2.8E-32 252.4 29.3 280 77-377 64-346 (347)
41 1o6v_A Internalin A; bacterial 100.0 1E-27 3.5E-32 262.1 28.4 279 78-377 67-366 (466)
42 2z81_A CD282 antigen, TOLL-lik 100.0 5E-29 1.7E-33 278.4 18.3 190 94-285 19-210 (549)
43 1o6v_A Internalin A; bacterial 100.0 2.3E-27 7.8E-32 259.4 30.3 280 78-378 45-345 (466)
44 4fcg_A Uncharacterized protein 100.0 3.9E-28 1.3E-32 252.7 20.2 235 101-355 79-314 (328)
45 3bz5_A Internalin-J, INLJ; leu 100.0 2.4E-27 8.3E-32 257.8 25.6 275 77-377 40-331 (457)
46 3zyj_A Leucine-rich repeat-con 100.0 1.8E-27 6.1E-32 258.3 22.5 245 82-355 46-292 (440)
47 2z66_A Variable lymphocyte rec 100.0 1.9E-28 6.6E-33 252.6 13.8 247 83-333 11-262 (306)
48 3zyi_A Leucine-rich repeat-con 100.0 2.7E-27 9.2E-32 257.8 22.7 245 83-356 58-304 (452)
49 1ozn_A Reticulon 4 receptor; N 100.0 1.4E-27 4.8E-32 243.5 18.6 255 82-363 14-269 (285)
50 3bz5_A Internalin-J, INLJ; leu 100.0 8.9E-27 3E-31 253.3 25.9 273 77-377 62-352 (457)
51 1ozn_A Reticulon 4 receptor; N 99.9 1.1E-27 3.9E-32 244.2 15.9 208 77-284 30-238 (285)
52 1wwl_A Monocyte differentiatio 99.9 8.3E-29 2.8E-33 256.1 7.4 249 99-356 39-310 (312)
53 4g8a_A TOLL-like receptor 4; l 99.9 1.6E-26 5.3E-31 262.4 26.1 148 88-238 40-188 (635)
54 3zyi_A Leucine-rich repeat-con 99.9 9.7E-27 3.3E-31 253.4 22.4 246 106-379 57-305 (452)
55 2z66_A Variable lymphocyte rec 99.9 5.2E-28 1.8E-32 249.3 11.4 261 78-339 27-294 (306)
56 2z80_A TOLL-like receptor 2, v 99.9 1.2E-27 4.3E-32 251.8 14.4 258 78-336 51-318 (353)
57 3zyj_A Leucine-rich repeat-con 99.9 1.4E-26 4.9E-31 251.1 22.8 247 105-379 45-294 (440)
58 1wwl_A Monocyte differentiatio 99.9 2.3E-28 7.8E-33 252.8 6.4 245 79-333 43-310 (312)
59 2jwp_A Malectin, MGC80075; sug 99.9 2.7E-27 9.2E-32 221.2 10.5 149 407-597 7-171 (174)
60 3o53_A Protein LRIM1, AGAP0063 99.9 6.2E-28 2.1E-32 250.1 4.2 266 80-359 11-280 (317)
61 1jl5_A Outer protein YOPM; leu 99.9 3.6E-25 1.2E-29 240.5 25.9 158 80-259 92-249 (454)
62 3g06_A SSPH2 (leucine-rich rep 99.9 3.3E-25 1.1E-29 248.3 20.3 255 80-377 41-297 (622)
63 1jl5_A Outer protein YOPM; leu 99.9 1.5E-25 5.3E-30 243.3 16.6 267 79-377 11-290 (454)
64 3oja_A Leucine-rich immune mol 99.9 3.6E-26 1.2E-30 250.7 9.6 224 95-332 22-250 (487)
65 2o6q_A Variable lymphocyte rec 99.9 6E-24 2E-28 214.8 21.7 218 52-309 2-219 (270)
66 3o53_A Protein LRIM1, AGAP0063 99.9 1.9E-25 6.4E-30 231.4 9.5 247 104-364 11-260 (317)
67 2z62_A TOLL-like receptor 4, v 99.9 5.4E-24 1.8E-28 215.9 20.1 217 94-334 21-239 (276)
68 1z7x_W Ribonuclease inhibitor; 99.9 4.5E-27 1.5E-31 256.6 -4.2 278 80-357 29-356 (461)
69 3oja_A Leucine-rich immune mol 99.9 3E-25 1E-29 243.3 8.3 236 78-327 33-270 (487)
70 1z7x_W Ribonuclease inhibitor; 99.9 1.8E-26 6.2E-31 251.8 -3.2 300 78-377 55-411 (461)
71 2z62_A TOLL-like receptor 4, v 99.9 8.4E-24 2.9E-28 214.4 16.7 208 78-310 27-239 (276)
72 3g06_A SSPH2 (leucine-rich rep 99.9 1.2E-22 4E-27 227.7 25.7 244 79-363 61-305 (622)
73 2o6q_A Variable lymphocyte rec 99.9 1.3E-22 4.3E-27 205.0 23.4 200 105-331 18-217 (270)
74 3rfs_A Internalin B, repeat mo 99.9 1.4E-23 4.6E-28 212.4 16.1 205 124-362 38-242 (272)
75 3rfs_A Internalin B, repeat mo 99.9 2.7E-23 9.4E-28 210.2 16.1 204 99-337 37-240 (272)
76 1p9a_G Platelet glycoprotein I 99.9 1.9E-22 6.6E-27 205.8 19.5 203 99-332 6-208 (290)
77 1p9a_G Platelet glycoprotein I 99.9 2.2E-22 7.6E-27 205.3 19.8 201 77-308 8-208 (290)
78 2ast_B S-phase kinase-associat 99.9 7E-24 2.4E-28 221.3 8.0 253 81-363 49-314 (336)
79 4glp_A Monocyte differentiatio 99.9 6.9E-23 2.4E-27 211.4 13.7 202 151-356 91-308 (310)
80 4glp_A Monocyte differentiatio 99.9 1.5E-22 5.2E-27 208.8 15.7 226 102-333 63-308 (310)
81 3goz_A Leucine-rich repeat-con 99.9 7.9E-24 2.7E-28 223.4 5.4 256 84-359 3-301 (362)
82 2ca6_A RAN GTPase-activating p 99.9 3.3E-24 1.1E-28 228.4 2.1 246 94-359 23-320 (386)
83 2ca6_A RAN GTPase-activating p 99.9 1.9E-24 6.6E-29 230.2 0.1 243 119-378 24-317 (386)
84 2ast_B S-phase kinase-associat 99.9 1.1E-23 3.9E-28 219.7 5.0 202 79-281 70-282 (336)
85 3goz_A Leucine-rich repeat-con 99.9 1.3E-23 4.6E-28 221.7 5.1 251 107-377 2-297 (362)
86 2xwt_C Thyrotropin receptor; s 99.9 2.9E-22 9.9E-27 198.5 14.3 204 93-329 24-236 (239)
87 2xwt_C Thyrotropin receptor; s 99.9 9.8E-22 3.4E-26 194.7 14.4 204 118-353 25-237 (239)
88 3m19_A Variable lymphocyte rec 99.9 3.4E-21 1.1E-25 192.4 16.7 180 128-334 15-194 (251)
89 1h6u_A Internalin H; cell adhe 99.9 5E-21 1.7E-25 197.1 18.4 193 101-333 39-231 (308)
90 1h6u_A Internalin H; cell adhe 99.9 4.4E-21 1.5E-25 197.6 17.6 194 124-356 38-231 (308)
91 3m19_A Variable lymphocyte rec 99.9 2.1E-20 7.2E-25 186.6 19.4 180 104-310 15-194 (251)
92 4ay9_X Follicle-stimulating ho 99.8 5.8E-20 2E-24 192.8 18.4 239 83-352 13-256 (350)
93 4ay9_X Follicle-stimulating ho 99.8 1E-19 3.5E-24 190.9 17.9 235 106-372 12-254 (350)
94 2o6s_A Variable lymphocyte rec 99.8 1.1E-19 3.6E-24 176.0 16.5 180 83-296 11-190 (208)
95 2o6s_A Variable lymphocyte rec 99.8 1.5E-19 5.3E-24 174.8 16.0 181 106-320 10-190 (208)
96 3ogk_B Coronatine-insensitive 99.8 1.7E-21 5.7E-26 219.4 0.8 296 80-376 139-500 (592)
97 3ogk_B Coronatine-insensitive 99.8 1.9E-21 6.5E-26 219.0 0.4 298 79-378 164-527 (592)
98 3cvr_A Invasion plasmid antige 99.8 2.6E-19 8.8E-24 198.2 16.2 216 47-318 36-253 (571)
99 3cvr_A Invasion plasmid antige 99.8 8.4E-19 2.9E-23 194.1 17.8 182 104-337 60-248 (571)
100 1m9s_A Internalin B; cell inva 99.8 1.6E-18 5.6E-23 193.8 14.0 171 100-284 40-210 (605)
101 3e6j_A Variable lymphocyte rec 99.8 9.1E-18 3.1E-22 164.9 17.1 144 93-239 32-175 (229)
102 2v70_A SLIT-2, SLIT homolog 2 99.8 4.8E-18 1.6E-22 165.8 15.0 156 82-240 14-170 (220)
103 1m9s_A Internalin B; cell inva 99.8 4.1E-18 1.4E-22 190.5 16.4 173 77-263 41-213 (605)
104 1h6t_A Internalin B; cell adhe 99.8 3.2E-18 1.1E-22 174.5 14.2 171 101-309 44-214 (291)
105 1h6t_A Internalin B; cell adhe 99.8 5E-18 1.7E-22 173.2 15.4 171 149-356 44-214 (291)
106 2v9t_B SLIT homolog 2 protein 99.8 5.2E-18 1.8E-22 165.5 14.8 153 82-237 14-166 (220)
107 2xot_A Amphoterin-induced prot 99.7 5.4E-18 1.8E-22 178.5 13.1 163 82-247 21-187 (361)
108 2v9t_B SLIT homolog 2 protein 99.7 1.8E-17 6.3E-22 161.6 15.4 151 106-259 14-164 (220)
109 2xot_A Amphoterin-induced prot 99.7 1.1E-17 3.8E-22 176.1 14.5 179 106-308 21-202 (361)
110 2v70_A SLIT-2, SLIT homolog 2 99.7 2.3E-17 7.8E-22 160.9 14.9 152 106-260 14-166 (220)
111 3e6j_A Variable lymphocyte rec 99.7 6.9E-17 2.4E-21 158.6 17.0 150 107-260 23-172 (229)
112 2p1m_B Transport inhibitor res 99.7 1.9E-19 6.4E-24 202.7 -1.8 127 78-205 104-241 (594)
113 2p1m_B Transport inhibitor res 99.7 1.7E-19 5.9E-24 203.0 -2.2 297 78-376 129-493 (594)
114 4b8c_D Glucose-repressible alc 99.7 1.4E-18 4.9E-23 199.0 4.3 194 26-243 129-336 (727)
115 4ezg_A Putative uncharacterize 99.7 6E-17 2.1E-21 155.1 13.9 150 80-236 45-194 (197)
116 4ezg_A Putative uncharacterize 99.7 6E-17 2E-21 155.1 13.9 105 126-234 43-147 (197)
117 1dce_A Protein (RAB geranylger 99.7 5.3E-20 1.8E-24 204.6 -10.3 120 225-349 443-567 (567)
118 1dce_A Protein (RAB geranylger 99.7 4.6E-20 1.6E-24 205.1 -12.3 122 200-326 442-567 (567)
119 1xeu_A Internalin C; cellular 99.7 8.7E-17 3E-21 161.3 9.0 166 129-333 21-186 (263)
120 1xeu_A Internalin C; cellular 99.7 8.5E-17 2.9E-21 161.4 8.8 169 102-309 18-186 (263)
121 1w8a_A SLIT protein; signaling 99.6 5E-16 1.7E-20 148.0 11.6 132 82-216 11-143 (192)
122 4b8c_D Glucose-repressible alc 99.6 6.9E-17 2.4E-21 185.1 5.0 145 94-242 215-360 (727)
123 1w8a_A SLIT protein; signaling 99.6 1.4E-15 4.9E-20 144.8 12.6 132 106-240 11-143 (192)
124 2ell_A Acidic leucine-rich nuc 99.6 1.2E-15 4.2E-20 141.9 10.8 132 103-236 24-160 (168)
125 2ell_A Acidic leucine-rich nuc 99.6 3E-15 1E-19 139.2 11.5 133 125-259 22-159 (168)
126 2je0_A Acidic leucine-rich nuc 99.6 9.4E-16 3.2E-20 139.6 7.7 126 103-230 17-147 (149)
127 2je0_A Acidic leucine-rich nuc 99.6 2.1E-15 7.2E-20 137.3 8.7 128 126-255 16-148 (149)
128 2wfh_A SLIT homolog 2 protein 99.6 1.1E-14 3.9E-19 138.6 12.7 128 82-213 13-140 (193)
129 2o6r_A Variable lymphocyte rec 99.6 3E-14 1E-18 133.7 15.2 133 81-216 9-141 (177)
130 2wfh_A SLIT homolog 2 protein 99.6 1.7E-14 5.9E-19 137.4 13.4 128 106-237 13-140 (193)
131 2o6r_A Variable lymphocyte rec 99.6 2.3E-14 8E-19 134.4 14.1 133 105-240 9-141 (177)
132 3sb4_A Hypothetical leucine ri 99.6 1.8E-15 6.2E-20 157.1 6.9 261 79-348 25-327 (329)
133 3sb4_A Hypothetical leucine ri 99.6 1.6E-15 5.4E-20 157.5 5.2 264 93-368 13-324 (329)
134 1a9n_A U2A', U2A'; complex (nu 99.5 5.2E-14 1.8E-18 131.9 7.8 134 98-236 14-153 (176)
135 1ds9_A Outer arm dynein; leuci 99.5 4.3E-16 1.5E-20 149.2 -7.1 136 100-240 15-157 (198)
136 1ds9_A Outer arm dynein; leuci 99.4 4.1E-16 1.4E-20 149.4 -8.4 144 81-229 20-180 (198)
137 4fdw_A Leucine rich hypothetic 99.4 2.1E-12 7.3E-17 137.1 17.0 248 96-355 129-383 (401)
138 4fdw_A Leucine rich hypothetic 99.4 3.3E-12 1.1E-16 135.7 18.2 260 101-374 111-380 (401)
139 1a9n_A U2A', U2A'; complex (nu 99.4 2E-13 6.7E-18 128.0 7.3 109 123-236 15-126 (176)
140 3g39_A Variable lymphocyte rec 99.4 1.6E-12 5.4E-17 121.0 12.9 104 82-188 12-115 (170)
141 2r9u_A Variable lymphocyte rec 99.4 3.6E-12 1.2E-16 119.0 12.9 104 82-188 15-118 (174)
142 3g39_A Variable lymphocyte rec 99.4 4.5E-12 1.5E-16 117.9 12.9 108 105-215 11-118 (170)
143 2r9u_A Variable lymphocyte rec 99.3 9E-12 3.1E-16 116.3 12.8 106 106-214 15-120 (174)
144 3un9_A NLR family member X1; l 99.2 9.2E-13 3.1E-17 138.6 -4.3 186 103-308 72-283 (372)
145 2ifg_A High affinity nerve gro 99.1 8.7E-11 3E-15 122.5 10.6 102 84-188 13-116 (347)
146 2ifg_A High affinity nerve gro 99.1 9.3E-11 3.2E-15 122.3 10.4 103 107-212 12-116 (347)
147 3un9_A NLR family member X1; l 99.1 3.5E-12 1.2E-16 134.1 -0.6 14 223-236 126-139 (372)
148 2ra8_A Uncharacterized protein 98.9 5.7E-10 2E-14 116.4 6.0 103 78-183 106-227 (362)
149 4fs7_A Uncharacterized protein 98.9 1.7E-08 5.9E-13 107.0 17.5 279 79-372 71-374 (394)
150 2ra8_A Uncharacterized protein 98.9 3.1E-10 1E-14 118.4 2.2 63 270-332 251-320 (362)
151 4gt6_A Cell surface protein; l 98.7 1.6E-07 5.4E-12 99.5 16.6 263 81-354 66-369 (394)
152 4fs7_A Uncharacterized protein 98.7 1.6E-07 5.4E-12 99.5 14.2 220 120-352 155-376 (394)
153 4gt6_A Cell surface protein; l 98.6 1.2E-06 4E-11 92.7 17.6 268 97-375 57-368 (394)
154 4h09_A Hypothetical leucine ri 98.4 1.4E-05 4.9E-10 83.8 19.3 259 80-351 47-319 (379)
155 1io0_A Tropomodulin; LRR prote 98.3 5.5E-08 1.9E-12 91.4 -0.5 117 95-211 28-163 (185)
156 1io0_A Tropomodulin; LRR prote 98.3 2.2E-07 7.6E-12 87.2 3.1 15 195-209 32-46 (185)
157 3rw6_A Nuclear RNA export fact 98.2 7.8E-08 2.7E-12 95.2 -2.8 80 148-229 167-257 (267)
158 3rw6_A Nuclear RNA export fact 98.1 1.6E-06 5.3E-11 85.8 4.5 103 102-206 140-258 (267)
159 4h09_A Hypothetical leucine ri 98.0 0.0002 6.9E-09 74.9 17.5 263 77-352 67-343 (379)
160 3e4g_A ATP synthase subunit S, 97.8 6.6E-06 2.3E-10 75.5 1.8 34 296-329 115-149 (176)
161 3e4g_A ATP synthase subunit S, 97.6 2.6E-05 8.8E-10 71.6 3.9 85 224-308 62-153 (176)
162 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00049 1.7E-08 64.2 3.1 14 271-284 98-111 (197)
163 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00068 2.3E-08 63.3 4.0 64 173-236 39-111 (197)
164 2k1k_A Ephrin type-A receptor 96.4 0.00034 1.2E-08 45.7 -0.8 31 609-639 8-38 (38)
165 2l2t_A Receptor tyrosine-prote 96.4 0.00037 1.3E-08 46.8 -0.7 34 610-643 8-41 (44)
166 2ks1_B Epidermal growth factor 96.3 0.00047 1.6E-08 46.5 -0.6 33 610-642 9-41 (44)
167 3rfe_A Platelet glycoprotein I 96.3 0.006 2.1E-07 53.0 6.3 55 275-331 12-67 (130)
168 3rfe_A Platelet glycoprotein I 95.6 0.019 6.7E-07 49.7 6.3 34 105-138 33-66 (130)
169 2jwa_A Receptor tyrosine-prote 93.8 0.0045 1.5E-07 41.5 -1.8 30 611-641 11-40 (44)
170 2k9y_A Ephrin type-A receptor 89.7 0.038 1.3E-06 36.9 -1.1 13 612-624 13-25 (41)
171 2o14_A Hypothetical protein YX 82.7 7.9 0.00027 39.7 11.5 77 492-598 80-156 (375)
172 1iij_A ERBB-2 receptor protein 80.1 0.067 2.3E-06 33.8 -3.2 26 614-640 10-35 (35)
173 2klu_A T-cell surface glycopro 76.6 0.94 3.2E-05 32.8 1.3 15 617-631 12-26 (70)
174 2l34_A TYRO protein tyrosine k 73.6 0.31 1E-05 30.6 -1.6 25 611-635 6-30 (33)
175 2w47_A Lipolytic enzyme, G-D-S 71.6 24 0.00083 30.3 9.7 91 489-599 42-133 (144)
176 2w3j_A Carbohydrate binding mo 70.9 15 0.00052 31.8 8.1 87 492-598 43-130 (145)
177 2vzp_A Aocbm35, EXO-beta-D-glu 68.0 19 0.00066 30.1 8.1 70 489-569 41-111 (127)
178 2wz8_A Cellulosome protein doc 67.1 24 0.00082 30.9 8.7 96 492-597 51-149 (156)
179 2llm_A Amyloid beta A4 protein 66.0 1.6 5.6E-05 28.7 0.0 15 610-624 15-29 (43)
180 2w87_A Esterase D, XYL-CBM35; 58.1 25 0.00085 30.1 7.0 86 492-596 43-130 (139)
181 2l6w_A Beta-type platelet-deri 50.8 4.6 0.00016 25.9 0.0 7 635-641 31-37 (39)
182 2k1a_A Integrin alpha-IIB; sin 33.6 6.8 0.00023 25.9 -0.5 13 611-623 10-22 (42)
183 2lp1_A C99; alzheimer'S D memb 39.5 9 0.00031 31.2 0.0 13 612-624 30-42 (122)
184 2l8s_A Integrin alpha-1; trans 32.9 5.5 0.00019 27.8 -1.1 14 611-624 9-22 (54)
185 2lz0_A Uncharacterized protein 27.0 91 0.0031 24.7 5.1 36 122-158 15-50 (100)
186 1s7q_A H-2KB, H-2 class I hist 26.9 13 0.00046 37.5 0.0 12 612-623 281-292 (348)
187 2lz0_A Uncharacterized protein 26.0 1.6E+02 0.0055 23.2 6.4 44 140-184 9-52 (100)
188 2cdp_A Beta-agarase 1; carbohy 22.6 3.7E+02 0.013 23.1 9.0 66 492-569 71-141 (160)
189 2knc_A Integrin alpha-IIB; tra 21.8 43 0.0015 23.4 1.8 14 611-624 12-25 (54)
190 4f87_A Plycb; lysin, bacteriop 21.0 53 0.0018 22.7 2.0 11 585-595 29-39 (72)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.6e-39 Score=335.12 Aligned_cols=298 Identities=29% Similarity=0.448 Sum_probs=251.8
Q ss_pred CCCHHHHHHHHHHHHhcCCC---CCCCCCCCCCCCCCCCCCCCCCCCCeeeecCCCCCceeEEEEecCCCCc--cCChhc
Q 006206 25 STDSAEVDALNKLIDYWNLR---SKINLTTIDPCTRNASWASENANPRVACDCTSNSCHITHLKIYALDIMG--ELPSEL 99 (657)
Q Consensus 25 ~~~~~e~~aL~~~~~~~~~~---~~w~~~~~d~C~~~~~W~~~~~~~~v~C~~~~~~~~v~~L~l~~~~l~~--~lp~~l 99 (657)
.|+++|++||.+||+.++.+ ..|+.. .|||.. .| .||.|+......+|++|+++++++.+ .+|..+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~-~~~C~~--~w------~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l 72 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWLPT-TDCCNR--TW------LGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCCTT-SCTTTT--CS------TTEEECCSSSCCCEEEEEEECCCCSSCEECCGGG
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCCCCC-CCCCcC--CC------cceEeCCCCCCceEEEEECCCCCccCCcccChhH
Confidence 58999999999999999754 579776 789962 37 79999854334789999999999998 899999
Q ss_pred cCCCCCCEEEccC-CCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCC
Q 006206 100 FMLRKLMDLNLGQ-NVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQ 178 (657)
Q Consensus 100 ~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 178 (657)
.++++|++|+|++ |.+.+.+|..|+++++|++|+|++|.+++.+|..|.++++|++|+|++|.+.+.+|..+..+++|+
T Consensus 73 ~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 152 (313)
T 1ogq_A 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152 (313)
T ss_dssp GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCC
Confidence 9999999999994 888888999999999999999999999988999999999999999999999888888899999999
Q ss_pred eeecccccCCCCCchhccCCC-CCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCC
Q 006206 179 QLYIDSSGVTGSIPQEFANLK-SLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDL 257 (657)
Q Consensus 179 ~L~Ls~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~ 257 (657)
+|++++|.+++.+|..+..++ +|++|++++|++.+.+|..+..++ |++|++++|.+++..|..+..+
T Consensus 153 ~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l----------- 220 (313)
T 1ogq_A 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSD----------- 220 (313)
T ss_dssp EEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTT-----------
T ss_pred eEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcC-----------
Confidence 999999999888888888887 888888888888888888777776 8888888887776666555544
Q ss_pred CCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcCCCCCCc
Q 006206 258 SAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPV 337 (657)
Q Consensus 258 ~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 337 (657)
++|++|+|++|.+++.+|. +..+++|++|+|++|++++.+|..+..+++|++|+|++|+++|.+|.
T Consensus 221 -------------~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 221 -------------KNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp -------------SCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred -------------CCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 5566666666777655555 67788999999999999888898899999999999999999988887
Q ss_pred cccCCCCceEeccccc-CCCC
Q 006206 338 NIIAPNLIALDVSYNP-LSGN 357 (657)
Q Consensus 338 ~~~~~~L~~LdLs~N~-l~g~ 357 (657)
...+++|+.|++++|+ +.|.
T Consensus 287 ~~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 287 GGNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp STTGGGSCGGGTCSSSEEEST
T ss_pred CccccccChHHhcCCCCccCC
Confidence 7668899999999998 6764
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.7e-39 Score=364.47 Aligned_cols=340 Identities=19% Similarity=0.280 Sum_probs=281.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCC---CCC---CCeeeecCCCCCceeEEEEecCCCCccCChhc
Q 006206 26 TDSAEVDALNKLIDYWNLRSKINLTTIDPCTRNASWASE---NAN---PRVACDCTSNSCHITHLKIYALDIMGELPSEL 99 (657)
Q Consensus 26 ~~~~e~~aL~~~~~~~~~~~~w~~~~~d~C~~~~~W~~~---~~~---~~v~C~~~~~~~~v~~L~l~~~~l~~~lp~~l 99 (657)
....|+.||.+++..++.+. |... .++|.....|... ..| .||+|+.. ++|+.|+|+++++.|.+|+++
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~-w~~~-~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~---~~V~~L~L~~~~l~g~lp~~l 101 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKN-WSQQ-GFGTQPGANWNFNKELDMWGAQPGVSLNSN---GRVTGLSLEGFGASGRVPDAI 101 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGG-CCCC-C------CCCCCSSCGGGTTCCTTEEECTT---CCEEEEECTTSCCEEEECGGG
T ss_pred hHHHHHHHHHHHHHHcCCCC-cccC-CcCCccCCCCCCCCCcccccCCCCeEEcCC---CCEEEEEecCcccCCcCChHH
Confidence 34569999999999987653 5433 2333323344321 123 79999743 799999999999999999999
Q ss_pred cCCCCCCEEEccCCCC----------------------------------------------------------------
Q 006206 100 FMLRKLMDLNLGQNVL---------------------------------------------------------------- 115 (657)
Q Consensus 100 ~~l~~L~~L~Ls~n~l---------------------------------------------------------------- 115 (657)
++|++|++|+|++|.+
T Consensus 102 ~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 181 (636)
T 4eco_A 102 GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181 (636)
T ss_dssp GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCC
T ss_pred hcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccccccc
Confidence 9999999999998843
Q ss_pred --------------CCCCchhcCCCCCCCeeEcccCcCCCC-----------------CCcccc--CCCCCcEEEeeccc
Q 006206 116 --------------NGSIPAEIGQLSNMQYLSLGINNFTGR-----------------VPTELG--NLTKLISLSFSSNN 162 (657)
Q Consensus 116 --------------~~~~p~~l~~l~~L~~L~Ls~n~l~~~-----------------~p~~~~--~l~~L~~L~Ls~n~ 162 (657)
++ +|..++++++|++|+|++|.+++. +|..++ ++++|++|+|++|.
T Consensus 182 ~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~ 260 (636)
T 4eco_A 182 TLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP 260 (636)
T ss_dssp CCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT
T ss_pred chhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc
Confidence 34 788899999999999999999986 999999 99999999999999
Q ss_pred CCCCCchhhcCCCCCCeeeccccc-CCC-CCchhccCC------CCCcEEEccCCcCCCCCch--hcCCCCcccEEEccC
Q 006206 163 FFGPLPKELGKLTSLQQLYIDSSG-VTG-SIPQEFANL------KSLRILWASDNLFTGKIPE--FFGTLTELADLRLQG 232 (657)
Q Consensus 163 l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~p~~l~~l------~~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~l~~ 232 (657)
+.+.+|..++++++|++|+|++|+ +++ .+|..+..+ ++|++|++++|+++ .+|. .+..+++|++|++++
T Consensus 261 l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~ 339 (636)
T 4eco_A 261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLY 339 (636)
T ss_dssp TCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCS
T ss_pred CCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcC
Confidence 999999999999999999999998 888 899888876 99999999999999 8888 899999999999999
Q ss_pred CCCCCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCC-CCEEEccCcccccCCcccccCCC--CCcEEeccCCCCCC
Q 006206 233 TLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKS-LSILSLRNCRVSGKIPDQLGTFA--KLQLLDLSFNKLTG 309 (657)
Q Consensus 233 n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L~Ls~n~l~~ 309 (657)
|.++|.+| .+..+++|+.|++++|.+. ..+..+..+++ |++|+|++|.++ .+|..+..++ +|+.|++++|++++
T Consensus 340 N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 340 NQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp CCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred CcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCC
Confidence 99998888 8888999999999998877 44555778888 999999999988 7887776654 89999999999988
Q ss_pred CCchhcc-------CCCCCcEEEccCCcCCCCCCccc--cCCCCceEecccccCCCCCCccccC-C--------CcE-EE
Q 006206 310 QIPTSLQ-------DLSTLQYLYLGNNNLSGELPVNI--IAPNLIALDVSYNPLSGNLPRNFAK-G--------GLS-MN 370 (657)
Q Consensus 310 ~~p~~l~-------~l~~L~~L~L~~N~l~~~~p~~~--~~~~L~~LdLs~N~l~g~~p~~~~~-~--------~l~-~~ 370 (657)
.+|..+. .+++|+.|+|++|+++ .+|... .+++|++|+|++|+++ .+|..... . .|+ ++
T Consensus 417 ~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~ 494 (636)
T 4eco_A 417 VDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSID 494 (636)
T ss_dssp TTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEE
T ss_pred cchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEE
Confidence 8888777 7778889999999888 566544 3688888888888888 66655544 2 554 78
Q ss_pred eecCCcC
Q 006206 371 VIGSSIN 377 (657)
Q Consensus 371 l~~n~~~ 377 (657)
+++|++.
T Consensus 495 Ls~N~l~ 501 (636)
T 4eco_A 495 LRFNKLT 501 (636)
T ss_dssp CCSSCCC
T ss_pred CcCCcCC
Confidence 8888775
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.9e-38 Score=366.64 Aligned_cols=336 Identities=26% Similarity=0.378 Sum_probs=253.8
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCC---CCCCCCCCCCCCCCCCCCCCCCCCCeeeecCCCCCceeEEEEecCCCCcc---C
Q 006206 22 AQTSTDSAEVDALNKLIDYWNLR---SKINLTTIDPCTRNASWASENANPRVACDCTSNSCHITHLKIYALDIMGE---L 95 (657)
Q Consensus 22 ~~~~~~~~e~~aL~~~~~~~~~~---~~w~~~~~d~C~~~~~W~~~~~~~~v~C~~~~~~~~v~~L~l~~~~l~~~---l 95 (657)
++++..++|++||.+||+.+..+ .+|+.. .|||. | .||+|+ .++|+.|+|+++.+.|. +
T Consensus 5 ~~~~~~~~~~~all~~k~~~~~~~~l~~W~~~-~~~C~----w------~gv~C~----~~~v~~L~L~~~~l~g~~~~l 69 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLPDKNLLPDWSSN-KNPCT----F------DGVTCR----DDKVTSIDLSSKPLNVGFSAV 69 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCSCTTSSTTCCTT-SCGGG----S------TTEEEE----TTEEEEEECTTSCCCEEHHHH
T ss_pred ccccCCHHHHHHHHHHHhhCCCcccccCCCCC-CCCcC----C------cceEEC----CCcEEEEECCCCCcCCccCcc
Confidence 33444778999999999988643 679855 79997 8 799998 36999999999988887 5
Q ss_pred Ch-----------------------hccCCCCCCEEEccCCCCCCCCch--hcCCCCCCCeeEcccCcCCCCCCccc-cC
Q 006206 96 PS-----------------------ELFMLRKLMDLNLGQNVLNGSIPA--EIGQLSNMQYLSLGINNFTGRVPTEL-GN 149 (657)
Q Consensus 96 p~-----------------------~l~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~ 149 (657)
|+ .+..+++|++|+|++|.+++.+|. .++++++|++|+|++|.+.+.+|..+ .+
T Consensus 70 ~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 149 (768)
T 3rgz_A 70 SSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK 149 (768)
T ss_dssp HHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCC
T ss_pred ChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhcc
Confidence 54 556667777777777777666666 67777777777777777766666654 66
Q ss_pred CCCCcEEEeecccCCCCCchh---hcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCccc
Q 006206 150 LTKLISLSFSSNNFFGPLPKE---LGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELA 226 (657)
Q Consensus 150 l~~L~~L~Ls~n~l~~~~p~~---l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 226 (657)
+++|++|+|++|.+++..|.. +.++++|++|++++|.+.+..|. ..+++|++|++++|++.+.+|. +.++++|+
T Consensus 150 l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~ 226 (768)
T 3rgz_A 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQ 226 (768)
T ss_dssp CTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCC
T ss_pred CCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCC
Confidence 777777777777776666655 56777777777777777665543 6778888888888888877776 88888888
Q ss_pred EEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCC-CCCcEEeccCC
Q 006206 227 DLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTF-AKLQLLDLSFN 305 (657)
Q Consensus 227 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~Ls~n 305 (657)
+|++++|.+++.+|..+..+++|++|++++|.+....+.. .+++|++|+|++|.+++.+|..+... ++|++|+|++|
T Consensus 227 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n 304 (768)
T 3rgz_A 227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304 (768)
T ss_dssp EEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS
T ss_pred EEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCC
Confidence 8888888888888888888888888888888765443332 67788888888888887888777664 88888888888
Q ss_pred CCCCCCchhccCCCCCcEEEccCCcCCCCCCcc-c-cCCCCceEecccccCCCCCCccccC-C-CcE-EEeecCCcC
Q 006206 306 KLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVN-I-IAPNLIALDVSYNPLSGNLPRNFAK-G-GLS-MNVIGSSIN 377 (657)
Q Consensus 306 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~-~~~~L~~LdLs~N~l~g~~p~~~~~-~-~l~-~~l~~n~~~ 377 (657)
++++.+|..+..+++|++|+|++|+++|.+|.. + .+++|++|+|++|+++|.+|..+.. . .++ +++++|++.
T Consensus 305 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~ 381 (768)
T 3rgz_A 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381 (768)
T ss_dssp EEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEE
T ss_pred cCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcC
Confidence 888888888888888888888888888777754 2 4678888888888888888877665 3 554 777777664
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.6e-38 Score=365.91 Aligned_cols=306 Identities=30% Similarity=0.462 Sum_probs=248.8
Q ss_pred CCceeEEEEecCCCCccCChh-ccCCCCCCEEEccCCCCCCCCchhcCC---------------------------CCCC
Q 006206 78 SCHITHLKIYALDIMGELPSE-LFMLRKLMDLNLGQNVLNGSIPAEIGQ---------------------------LSNM 129 (657)
Q Consensus 78 ~~~v~~L~l~~~~l~~~lp~~-l~~l~~L~~L~Ls~n~l~~~~p~~l~~---------------------------l~~L 129 (657)
..++++|++++|.+.|.+|.. +.++++|++|++++|.+++.+|..+.. +++|
T Consensus 317 l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L 396 (768)
T 3rgz_A 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396 (768)
T ss_dssp CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCc
Confidence 345666666666666666654 666666666666666665555544433 4566
Q ss_pred CeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCC
Q 006206 130 QYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDN 209 (657)
Q Consensus 130 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 209 (657)
++|++++|.+++.+|..+.++++|++|+|++|++++.+|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|
T Consensus 397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476 (768)
T ss_dssp CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC
Confidence 77777777777777888888888888888888888888888888888888888888888888888888889999999999
Q ss_pred cCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcc
Q 006206 210 LFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPD 289 (657)
Q Consensus 210 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~ 289 (657)
++.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|.+....+..+..+++|++|+|++|.+++.+|.
T Consensus 477 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 88888888888889999999999999888888888899999999998888777778888889999999999988877775
Q ss_pred cc----------------------------------------------------------------------cCCCCCcE
Q 006206 290 QL----------------------------------------------------------------------GTFAKLQL 299 (657)
Q Consensus 290 ~l----------------------------------------------------------------------~~l~~L~~ 299 (657)
.+ ..+++|+.
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~ 636 (768)
T 3rgz_A 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636 (768)
T ss_dssp GGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCE
T ss_pred HHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccE
Confidence 43 23467889
Q ss_pred EeccCCCCCCCCchhccCCCCCcEEEccCCcCCCCCCccc-cCCCCceEecccccCCCCCCccccC-CCcE-EEeecCCc
Q 006206 300 LDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSI 376 (657)
Q Consensus 300 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~-~~~~L~~LdLs~N~l~g~~p~~~~~-~~l~-~~l~~n~~ 376 (657)
|||++|+++|.+|..++.++.|+.|+|++|+++|.+|..+ .+++|+.|||++|+++|.+|+.+.. ..|+ +++++|++
T Consensus 637 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp EECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred EECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 9999999999999999999999999999999999999776 4799999999999999999988877 6665 89999988
Q ss_pred CCCCccCCcccc
Q 006206 377 NANNLQDGKALG 388 (657)
Q Consensus 377 ~~~~~~~~~p~~ 388 (657)
+ |.+|..
T Consensus 717 ~-----g~iP~~ 723 (768)
T 3rgz_A 717 S-----GPIPEM 723 (768)
T ss_dssp E-----EECCSS
T ss_pred c-----ccCCCc
Confidence 6 567754
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.6e-38 Score=363.71 Aligned_cols=339 Identities=18% Similarity=0.257 Sum_probs=272.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCCCCC----CCC--CCCCCCCCCC------CCCCCeeeecCCCCCceeEEEEecCCC
Q 006206 24 TSTDSAEVDALNKLIDYWNLRSKINLTT----IDP--CTRNASWASE------NANPRVACDCTSNSCHITHLKIYALDI 91 (657)
Q Consensus 24 ~~~~~~e~~aL~~~~~~~~~~~~w~~~~----~d~--C~~~~~W~~~------~~~~~v~C~~~~~~~~v~~L~l~~~~l 91 (657)
+....+|+.||.+||+.++.+ +|+... .+| |. |... ....||.|++ .++|+.|+|+++++
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~-~W~~~~~~~~~~~~~C~----W~~~~~~~~w~~~~GV~C~~---~~~V~~L~Ls~~~L 335 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK-NWRYYSGTINNTIHSLN----WNFNKELDMWGDQPGVDLDN---NGRVTGLSLAGFGA 335 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG-GCCCCCSSCSSCCCCCS----CCCSSCGGGTTCCTTEEECT---TSCEEEEECTTTCC
T ss_pred cccchHHHHHHHHHHHHcCCC-CCCcCCCcccccCCccc----cccccccccccCcCceEecC---CCCEEEEECccCCC
Confidence 345668999999999999876 697763 477 76 6221 1237999985 47999999999999
Q ss_pred CccCChhccCCCCCCEEEc-cCCCCCCC----------------------------------------------------
Q 006206 92 MGELPSELFMLRKLMDLNL-GQNVLNGS---------------------------------------------------- 118 (657)
Q Consensus 92 ~~~lp~~l~~l~~L~~L~L-s~n~l~~~---------------------------------------------------- 118 (657)
.|.+|+.+++|++|++|+| ++|.+.|.
T Consensus 336 ~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~ 415 (876)
T 4ecn_A 336 KGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMK 415 (876)
T ss_dssp EEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSC
T ss_pred CCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccc
Confidence 9999999999999999999 77754332
Q ss_pred ------------------------CchhcCCCCCCCeeEcccCcCCC-----------------CCCcccc--CCCCCcE
Q 006206 119 ------------------------IPAEIGQLSNMQYLSLGINNFTG-----------------RVPTELG--NLTKLIS 155 (657)
Q Consensus 119 ------------------------~p~~l~~l~~L~~L~Ls~n~l~~-----------------~~p~~~~--~l~~L~~ 155 (657)
+|..|+++++|++|+|++|++++ .+|..++ ++++|++
T Consensus 416 ~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~ 495 (876)
T 4ecn_A 416 PIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495 (876)
T ss_dssp CCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred ccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCE
Confidence 78889999999999999999998 3899988 9999999
Q ss_pred EEeecccCCCCCchhhcCCCCCCeeeccccc-CCC-CCchhccCCC-------CCcEEEccCCcCCCCCch--hcCCCCc
Q 006206 156 LSFSSNNFFGPLPKELGKLTSLQQLYIDSSG-VTG-SIPQEFANLK-------SLRILWASDNLFTGKIPE--FFGTLTE 224 (657)
Q Consensus 156 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~p~~l~~l~-------~L~~L~Ls~n~l~~~~~~--~l~~l~~ 224 (657)
|+|++|.+.+.+|..|.++++|++|+|++|+ +++ .+|..+..++ +|++|+|++|++. .+|. .+.++++
T Consensus 496 L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~ 574 (876)
T 4ecn_A 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVK 574 (876)
T ss_dssp EEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTT
T ss_pred EECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCC
Confidence 9999999999999999999999999999998 887 7887766554 9999999999999 8888 8999999
Q ss_pred ccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCC-CCEEEccCcccccCCcccccCCCC--CcEEe
Q 006206 225 LADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKS-LSILSLRNCRVSGKIPDQLGTFAK--LQLLD 301 (657)
Q Consensus 225 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~Ls~n~l~~~~p~~l~~l~~--L~~L~ 301 (657)
|++|++++|.++ .+| .+..+++|+.|++++|.+. ..+..+..+++ |++|+|++|.++ .+|..+..++. |+.|+
T Consensus 575 L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~ 650 (876)
T 4ecn_A 575 LGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVD 650 (876)
T ss_dssp CCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEE
T ss_pred CCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEE
Confidence 999999999998 788 8899999999999999888 45556788888 999999999988 77877766543 88888
Q ss_pred ccCCCCCCCCchhc---c--CCCCCcEEEccCCcCCCCCCccc--cCCCCceEecccccCCCCCCccccC-C--------
Q 006206 302 LSFNKLTGQIPTSL---Q--DLSTLQYLYLGNNNLSGELPVNI--IAPNLIALDVSYNPLSGNLPRNFAK-G-------- 365 (657)
Q Consensus 302 Ls~n~l~~~~p~~l---~--~l~~L~~L~L~~N~l~~~~p~~~--~~~~L~~LdLs~N~l~g~~p~~~~~-~-------- 365 (657)
|++|++.+.+|... . .+++|+.|+|++|+++ .+|... .+++|+.|+|++|+++ .+|..+.. .
T Consensus 651 Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~ 728 (876)
T 4ecn_A 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTY 728 (876)
T ss_dssp CCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGG
T ss_pred CcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccC
Confidence 88888876655321 1 2346777777777777 555443 3567777777777776 55544433 1
Q ss_pred CcE-EEeecCCcC
Q 006206 366 GLS-MNVIGSSIN 377 (657)
Q Consensus 366 ~l~-~~l~~n~~~ 377 (657)
.|+ +++++|++.
T Consensus 729 ~L~~L~Ls~N~L~ 741 (876)
T 4ecn_A 729 LLTTIDLRFNKLT 741 (876)
T ss_dssp GCCEEECCSSCCC
T ss_pred CccEEECCCCCCc
Confidence 343 666666664
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.4e-35 Score=323.48 Aligned_cols=300 Identities=19% Similarity=0.193 Sum_probs=222.2
Q ss_pred CceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCC-chhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEE
Q 006206 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSI-PAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLS 157 (657)
Q Consensus 79 ~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 157 (657)
.++++|+++++.+.+..|..+.++++|++|+|++|.+.+.+ +..|..+++|++|+|++|.+++..|..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 67999999999999888999999999999999999997665 56799999999999999999988899999999999999
Q ss_pred eecccCCCCCchh--hcCCCCCCeeecccccCCCCCchh-ccCCCCCcEEEccCCcCCCCCchhcCCC------------
Q 006206 158 FSSNNFFGPLPKE--LGKLTSLQQLYIDSSGVTGSIPQE-FANLKSLRILWASDNLFTGKIPEFFGTL------------ 222 (657)
Q Consensus 158 Ls~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l------------ 222 (657)
|++|.+++..+.. +..+++|++|+|++|.+++..|.. +..+++|++|++++|++.+..+..+..+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999998766655 899999999999999999887876 8999999999999999998877666544
Q ss_pred ----------------------CcccEEEccCCCCCCCchhhccCC----------------------------------
Q 006206 223 ----------------------TELADLRLQGTLLEGPIPRSFRAL---------------------------------- 246 (657)
Q Consensus 223 ----------------------~~L~~L~l~~n~l~~~~~~~l~~l---------------------------------- 246 (657)
++|++|++++|.+.+..|..+...
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 567777777777766555544322
Q ss_pred -----CCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCCCCC
Q 006206 247 -----NKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTL 321 (657)
Q Consensus 247 -----~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 321 (657)
++|+.|++++|.+....+..+..+++|++|+|++|.+++..|..+..+++|+.|+|++|++++..|..+..+++|
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 349 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence 355555555555555555555666666666666666665556566666666666666666665555566666666
Q ss_pred cEEEccCCcCCCCCCccc-cCCCCceEecccccCCCCCCccccC-CCcE-EEeecCCcCC
Q 006206 322 QYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSINA 378 (657)
Q Consensus 322 ~~L~L~~N~l~~~~p~~~-~~~~L~~LdLs~N~l~g~~p~~~~~-~~l~-~~l~~n~~~~ 378 (657)
+.|+|++|++++..|..+ .+++|++|+|++|++++..+..+.. +.|+ +++.+|++.+
T Consensus 350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 666666666665545433 3566666666666666544433333 4443 5666666653
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=310.77 Aligned_cols=302 Identities=22% Similarity=0.212 Sum_probs=269.8
Q ss_pred CCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEE
Q 006206 78 SCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLS 157 (657)
Q Consensus 78 ~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 157 (657)
..+++.|+++++.+.+..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|+++...+..|.++++|++|+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 45789999999999988888999999999999999999988899999999999999999999966666789999999999
Q ss_pred eecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCC
Q 006206 158 FSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEG 237 (657)
Q Consensus 158 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 237 (657)
|++|.+.+..+..|.++++|++|+|++|.+.+..+..|..+++|++|++++|++++..+..+..+++|+.|++++|.+.+
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 99999998888899999999999999999998888899999999999999999998888889999999999999999998
Q ss_pred CchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccC
Q 006206 238 PIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQD 317 (657)
Q Consensus 238 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 317 (657)
..+..+..+++|+.|++++|......+.......+|++|+|++|.+++..+..+..+++|+.|+|++|++++..+..|..
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence 88889999999999999998776655444555569999999999999655568899999999999999999777778999
Q ss_pred CCCCcEEEccCCcCCCCCCccc-cCCCCceEecccccCCCCCCccccC-CCcE-EEeecCCcCCC
Q 006206 318 LSTLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSINAN 379 (657)
Q Consensus 318 l~~L~~L~L~~N~l~~~~p~~~-~~~~L~~LdLs~N~l~g~~p~~~~~-~~l~-~~l~~n~~~~~ 379 (657)
+++|+.|+|++|++++..|..+ .+++|++|+|++|++++..+..+.. +.|+ +++.+|++.++
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 9999999999999998777655 4799999999999999766655555 5665 89999998764
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.5e-34 Score=324.19 Aligned_cols=290 Identities=19% Similarity=0.304 Sum_probs=255.3
Q ss_pred CccCChhccCCCCCCEEEccCCCCCCC-----------------CchhcC--CCCCCCeeEcccCcCCCCCCccccCCCC
Q 006206 92 MGELPSELFMLRKLMDLNLGQNVLNGS-----------------IPAEIG--QLSNMQYLSLGINNFTGRVPTELGNLTK 152 (657)
Q Consensus 92 ~~~lp~~l~~l~~L~~L~Ls~n~l~~~-----------------~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 152 (657)
+| +|..+.++++|++|+|++|.+++. +|..++ ++++|++|+|++|.+.+.+|..|+++++
T Consensus 196 ~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 274 (636)
T 4eco_A 196 TF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274 (636)
T ss_dssp EE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSS
T ss_pred cc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCC
Confidence 35 888999999999999999999986 999999 9999999999999999999999999999
Q ss_pred CcEEEeeccc-CCC-CCchhhcCC------CCCCeeecccccCCCCCch--hccCCCCCcEEEccCCcCCCCCchhcCCC
Q 006206 153 LISLSFSSNN-FFG-PLPKELGKL------TSLQQLYIDSSGVTGSIPQ--EFANLKSLRILWASDNLFTGKIPEFFGTL 222 (657)
Q Consensus 153 L~~L~Ls~n~-l~~-~~p~~l~~l------~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l 222 (657)
|++|+|++|+ +++ .+|..++++ ++|++|++++|+++ .+|. .+..+++|++|++++|++.|.+| .+..+
T Consensus 275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l 352 (636)
T 4eco_A 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSE 352 (636)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEE
T ss_pred CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCC
Confidence 9999999998 888 889888876 99999999999999 8898 89999999999999999998999 89999
Q ss_pred CcccEEEccCCCCCCCchhhccCCCC-CCeEEcCCCCCCCCChhhhhcC--CCCCEEEccCcccccCCccccc-------
Q 006206 223 TELADLRLQGTLLEGPIPRSFRALNK-LEDLRIGDLSAEDSTLDFLESQ--KSLSILSLRNCRVSGKIPDQLG------- 292 (657)
Q Consensus 223 ~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~Ls~n~l~~~~p~~l~------- 292 (657)
++|++|++++|.++ .+|..+..+++ |++|++++|.+.. .+..+... ++|++|+|++|.+++.+|..+.
T Consensus 353 ~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~ 430 (636)
T 4eco_A 353 IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430 (636)
T ss_dssp EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS-CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCC
T ss_pred CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcc-cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccc
Confidence 99999999999999 88889999999 9999999999884 34455544 4899999999999999998888
Q ss_pred CCCCCcEEeccCCCCCCCCch-hccCCCCCcEEEccCCcCCCCCCcccc--CC-------CCceEecccccCCCCCCccc
Q 006206 293 TFAKLQLLDLSFNKLTGQIPT-SLQDLSTLQYLYLGNNNLSGELPVNII--AP-------NLIALDVSYNPLSGNLPRNF 362 (657)
Q Consensus 293 ~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~p~~~~--~~-------~L~~LdLs~N~l~g~~p~~~ 362 (657)
.+++|+.|+|++|+++ .+|. .+..+++|++|+|++|+++ .+|.... .. +|++|+|++|+++ .+|..+
T Consensus 431 ~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~ 507 (636)
T 4eco_A 431 KGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDF 507 (636)
T ss_dssp CCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGG
T ss_pred cCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhh
Confidence 7889999999999999 5554 4567999999999999999 7775542 22 8999999999999 788877
Q ss_pred c--C-CCcE-EEeecCCcCCCCccCCcccccccccCC
Q 006206 363 A--K-GGLS-MNVIGSSINANNLQDGKALGMMQCLHS 395 (657)
Q Consensus 363 ~--~-~~l~-~~l~~n~~~~~~~~~~~p~~~~~~~~~ 395 (657)
. . +.|+ +++++|++. .+|..+..+...
T Consensus 508 ~~~~l~~L~~L~Ls~N~l~------~ip~~~~~l~~L 538 (636)
T 4eco_A 508 RATTLPYLVGIDLSYNSFS------KFPTQPLNSSTL 538 (636)
T ss_dssp STTTCTTCCEEECCSSCCS------SCCCGGGGCSSC
T ss_pred hhccCCCcCEEECCCCCCC------CcChhhhcCCCC
Confidence 6 4 6665 899999886 267665555443
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6.6e-34 Score=294.45 Aligned_cols=249 Identities=24% Similarity=0.409 Sum_probs=215.8
Q ss_pred CCCCEEEccCCCCCC--CCchhcCCCCCCCeeEccc-CcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCe
Q 006206 103 RKLMDLNLGQNVLNG--SIPAEIGQLSNMQYLSLGI-NNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQ 179 (657)
Q Consensus 103 ~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 179 (657)
.++++|+|++|.+++ .+|..++++++|++|+|++ |.+.+.+|..|.++++|++|+|++|.+++.+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 478999999999998 8899999999999999995 8898899999999999999999999998888888999999999
Q ss_pred eecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCC-cccEEEccCCCCCCCchhhccCCCCCCeEEcCCCC
Q 006206 180 LYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLT-ELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLS 258 (657)
Q Consensus 180 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (657)
|+|++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|.+++.+|..+..
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~------------- 196 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN------------- 196 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG-------------
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC-------------
Confidence 99999999888888888899999999999988888888888887 8888888888877666655443
Q ss_pred CCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcCCCCCCcc
Q 006206 259 AEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVN 338 (657)
Q Consensus 259 ~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 338 (657)
++ |++|+|++|.+++..|..+..+++|+.|+|++|++++.+|. +..+++|++|+|++|++++.+|..
T Consensus 197 -----------l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~ 263 (313)
T 1ogq_A 197 -----------LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQG 263 (313)
T ss_dssp -----------CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGG
T ss_pred -----------Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChH
Confidence 33 77888888999988999999999999999999999977765 888999999999999999999976
Q ss_pred c-cCCCCceEecccccCCCCCCccccC-CCcE-EEeecCCcCC
Q 006206 339 I-IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSINA 378 (657)
Q Consensus 339 ~-~~~~L~~LdLs~N~l~g~~p~~~~~-~~l~-~~l~~n~~~~ 378 (657)
+ .+++|++|+|++|+++|.+|.. .. +.++ +++.+|+..+
T Consensus 264 l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 264 LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp GGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred HhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCcc
Confidence 6 4799999999999999999975 44 5555 7888887554
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.6e-33 Score=303.00 Aligned_cols=284 Identities=20% Similarity=0.186 Sum_probs=249.6
Q ss_pred CCCCceeEEEEecCCCCccC-ChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCcc--ccCCCC
Q 006206 76 SNSCHITHLKIYALDIMGEL-PSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTE--LGNLTK 152 (657)
Q Consensus 76 ~~~~~v~~L~l~~~~l~~~l-p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--~~~l~~ 152 (657)
....++++|+++++.+.+.+ +..|.++++|++|+|++|.+++..|..|+++++|++|+|++|.+++..|.. |.++++
T Consensus 51 ~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 130 (455)
T 3v47_A 51 SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS 130 (455)
T ss_dssp SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTT
T ss_pred ccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCccc
Confidence 45568999999999988776 456899999999999999999888999999999999999999998766555 899999
Q ss_pred CcEEEeecccCCCCCchh-hcCCCCCCeeecccccCCCCCchhccCC---------------------------------
Q 006206 153 LISLSFSSNNFFGPLPKE-LGKLTSLQQLYIDSSGVTGSIPQEFANL--------------------------------- 198 (657)
Q Consensus 153 L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~l~~l--------------------------------- 198 (657)
|++|+|++|.+.+..|.. +.++++|++|++++|.+.+..+..+..+
T Consensus 131 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~ 210 (455)
T 3v47_A 131 LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210 (455)
T ss_dssp CCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTT
T ss_pred CCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccc
Confidence 999999999999887776 8899999999999999988777665443
Q ss_pred -CCCcEEEccCCcCCCCCchhcCC---------------------------------------CCcccEEEccCCCCCCC
Q 006206 199 -KSLRILWASDNLFTGKIPEFFGT---------------------------------------LTELADLRLQGTLLEGP 238 (657)
Q Consensus 199 -~~L~~L~Ls~n~l~~~~~~~l~~---------------------------------------l~~L~~L~l~~n~l~~~ 238 (657)
++|++|++++|++.+..|..+.. .++|++|++++|.+.+.
T Consensus 211 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 290 (455)
T 3v47_A 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL 290 (455)
T ss_dssp TCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE
T ss_pred cceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccccc
Confidence 67999999999887655544321 25799999999999988
Q ss_pred chhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCC
Q 006206 239 IPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDL 318 (657)
Q Consensus 239 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 318 (657)
.|..+..+++|++|++++|.+....+..+..+++|++|+|++|.+++..|..+..+++|++|+|++|++++..|..+..+
T Consensus 291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 370 (455)
T 3v47_A 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccc
Confidence 99999999999999999999988888889999999999999999998889999999999999999999998889999999
Q ss_pred CCCcEEEccCCcCCCCCCccc-cCCCCceEecccccCCCCCC
Q 006206 319 STLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLP 359 (657)
Q Consensus 319 ~~L~~L~L~~N~l~~~~p~~~-~~~~L~~LdLs~N~l~g~~p 359 (657)
++|++|+|++|++++..+..+ .+++|++|+|++|++++..|
T Consensus 371 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 371 PNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999999996444333 57999999999999999988
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.4e-32 Score=306.94 Aligned_cols=297 Identities=21% Similarity=0.231 Sum_probs=263.6
Q ss_pred ceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEee
Q 006206 80 HITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 159 (657)
Q Consensus 80 ~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 159 (657)
+++.|+++++.+.+..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+.++++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 7899999999998888888999999999999999998 788889999999999999999998888889999999999999
Q ss_pred cccCCCCCch-hhcCCCCCCeeecccccCCCCC--chhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCC
Q 006206 160 SNNFFGPLPK-ELGKLTSLQQLYIDSSGVTGSI--PQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLE 236 (657)
Q Consensus 160 ~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~--p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 236 (657)
+|.+.+.+|. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|++.+..|..+..+++|++|++++|.+.
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 9998876665 4889999999999999998665 778899999999999999999888889999999999999999998
Q ss_pred CCchh-hccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccC---CcccccCCCCCcEEeccCCCCCCCCc
Q 006206 237 GPIPR-SFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGK---IPDQLGTFAKLQLLDLSFNKLTGQIP 312 (657)
Q Consensus 237 ~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~---~p~~l~~l~~L~~L~Ls~n~l~~~~p 312 (657)
+..+. .+..+++|+.|++++|.+....+..+..+++|++|+|++|.+++. .+..+..+++|+.|++++|++++..|
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 493 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence 77665 488999999999999998888888889999999999999999863 33568889999999999999998888
Q ss_pred hhccCCCCCcEEEccCCcCCCCCCccc-cCCCCceEecccccCCCCCCccccC-CCcE-EEeecCCcCC
Q 006206 313 TSLQDLSTLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSINA 378 (657)
Q Consensus 313 ~~l~~l~~L~~L~L~~N~l~~~~p~~~-~~~~L~~LdLs~N~l~g~~p~~~~~-~~l~-~~l~~n~~~~ 378 (657)
..|..+++|+.|+|++|++++..|..+ .+++| +|+|++|++++.+|..+.. +.++ +++.+|++.+
T Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred hhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 899999999999999999998887655 47888 9999999999888876665 5554 8999999875
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=8.1e-32 Score=301.01 Aligned_cols=139 Identities=21% Similarity=0.163 Sum_probs=87.5
Q ss_pred CceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEe
Q 006206 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 158 (657)
Q Consensus 79 ~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 158 (657)
.++++|+++++.+.+..|..+.++++|++|+|++|.+++..|..|+.+++|++|+|++|++++..|..|+++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 46777777777776666666777777777777777776666666777777777777777776555555667777777777
Q ss_pred ecccCCC-CCchhhcCCCCCCeeecccccCCCCCc-hhccCCCCCcEEEccCCcCCCCCch
Q 006206 159 SSNNFFG-PLPKELGKLTSLQQLYIDSSGVTGSIP-QEFANLKSLRILWASDNLFTGKIPE 217 (657)
Q Consensus 159 s~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~~~ 217 (657)
++|.+++ ..|..+.++++|++|++++|.+.+.+| ..+..+++|++|++++|++.+..|.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence 7776654 234456666666666666665333333 3455555555555555555443333
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.9e-32 Score=313.36 Aligned_cols=309 Identities=21% Similarity=0.251 Sum_probs=214.8
Q ss_pred CCCCceeEEEEecCCCCc-----------------cCChhcc--CCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEccc
Q 006206 76 SNSCHITHLKIYALDIMG-----------------ELPSELF--MLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGI 136 (657)
Q Consensus 76 ~~~~~v~~L~l~~~~l~~-----------------~lp~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 136 (657)
....+++.|+|++|.+.+ .+|+.+. ++++|++|+|++|.+.+.+|..|+++++|++|+|++
T Consensus 445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524 (876)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT
T ss_pred hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC
Confidence 345688999999999988 3888877 999999999999999889999999999999999999
Q ss_pred Cc-CCC-CCCccccCCC-------CCcEEEeecccCCCCCch--hhcCCCCCCeeecccccCCCCCchhccCCCCCcEEE
Q 006206 137 NN-FTG-RVPTELGNLT-------KLISLSFSSNNFFGPLPK--ELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILW 205 (657)
Q Consensus 137 n~-l~~-~~p~~~~~l~-------~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 205 (657)
|+ +++ .+|..+++++ +|++|+|++|.++ .+|. .+.++++|++|+|++|.++ .+| .+..+++|+.|+
T Consensus 525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~ 601 (876)
T 4ecn_A 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLK 601 (876)
T ss_dssp CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEE
T ss_pred CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEE
Confidence 98 887 7887665544 8999999999888 7777 8888899999999998888 777 788888888888
Q ss_pred ccCCcCCCCCchhcCCCCc-ccEEEccCCCCCCCchhhccCCCC--CCeEEcCCCCCCCCChh---hhh--cCCCCCEEE
Q 006206 206 ASDNLFTGKIPEFFGTLTE-LADLRLQGTLLEGPIPRSFRALNK--LEDLRIGDLSAEDSTLD---FLE--SQKSLSILS 277 (657)
Q Consensus 206 Ls~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~l~~l~~--L~~L~l~~~~~~~~~~~---~l~--~~~~L~~L~ 277 (657)
|++|++. .+|..+..+++ |++|++++|.++ .+|..+..++. |+.|++++|.+....+. .+. ..++|++|+
T Consensus 602 Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~ 679 (876)
T 4ecn_A 602 LDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT 679 (876)
T ss_dssp CCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEE
T ss_pred CcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEE
Confidence 8888888 77877888888 888888888887 66766665543 77777777766543221 111 223566666
Q ss_pred ccCcccccCCcccc-cCCCCCcEEeccCCCCCCCCchhccCC--------CCCcEEEccCCcCCCCCCccc---cCCCCc
Q 006206 278 LRNCRVSGKIPDQL-GTFAKLQLLDLSFNKLTGQIPTSLQDL--------STLQYLYLGNNNLSGELPVNI---IAPNLI 345 (657)
Q Consensus 278 Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~l~~l--------~~L~~L~L~~N~l~~~~p~~~---~~~~L~ 345 (657)
|++|.++ .+|..+ ..+++|+.|+|++|+++ .+|..+... ++|+.|+|++|+++ .+|..+ .+++|+
T Consensus 680 Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~ 756 (876)
T 4ecn_A 680 LSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLS 756 (876)
T ss_dssp CCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCC
T ss_pred ccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcC
Confidence 6666666 344433 35666666666666666 444433221 25666666666666 455443 356666
Q ss_pred eEecccccCCCCCCccccC-CCcE-EEeecCC-cCCCCccCCccccccccc
Q 006206 346 ALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSS-INANNLQDGKALGMMQCL 393 (657)
Q Consensus 346 ~LdLs~N~l~g~~p~~~~~-~~l~-~~l~~n~-~~~~~~~~~~p~~~~~~~ 393 (657)
.|+|++|++++ +|..+.. +.|+ +++++|+ +..+...+.+|..+..|.
T Consensus 757 ~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~ 806 (876)
T 4ecn_A 757 NMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806 (876)
T ss_dssp EEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred EEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCC
Confidence 66666666665 5555544 4444 5555432 122223345555544443
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.98 E-value=8.4e-32 Score=298.87 Aligned_cols=291 Identities=18% Similarity=0.186 Sum_probs=185.2
Q ss_pred CceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEe
Q 006206 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 158 (657)
Q Consensus 79 ~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 158 (657)
.++++|++++|.+.+..|..|.++++|++|+|++|.+++..|..|+++++|++|+|++|+++ .+|.. .+++|++|+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 57888888888888777778888888888888888888777888888888888888888888 56665 7888888888
Q ss_pred ecccCCC-CCchhhcCCCCCCeeecccccCCCCCchhccCCCCC--cEEEccCCcC--CCCCchhcCCCC----------
Q 006206 159 SSNNFFG-PLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSL--RILWASDNLF--TGKIPEFFGTLT---------- 223 (657)
Q Consensus 159 s~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L--~~L~Ls~n~l--~~~~~~~l~~l~---------- 223 (657)
++|.+++ .+|..++++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..|..+..+.
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 8888876 467788888888888888888764 234455555 6666666666 444444333321
Q ss_pred -------------------------------------------------------------------------cccEEEc
Q 006206 224 -------------------------------------------------------------------------ELADLRL 230 (657)
Q Consensus 224 -------------------------------------------------------------------------~L~~L~l 230 (657)
+|++|++
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l 254 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEE
T ss_pred CcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEe
Confidence 4555555
Q ss_pred cCCCCCCCchhhc-----cCCCCCCeEEcCCCCC--------------------------CCCChhhhhcCCCCCEEEcc
Q 006206 231 QGTLLEGPIPRSF-----RALNKLEDLRIGDLSA--------------------------EDSTLDFLESQKSLSILSLR 279 (657)
Q Consensus 231 ~~n~l~~~~~~~l-----~~l~~L~~L~l~~~~~--------------------------~~~~~~~l~~~~~L~~L~Ls 279 (657)
++|.+++.+|..+ ..+++|+.++++.|.+ .... ....+++|++|+|+
T Consensus 255 ~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls 332 (520)
T 2z7x_B 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFS 332 (520)
T ss_dssp EEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECC
T ss_pred ecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeE
Confidence 5555555555544 3343333333333332 1110 01345666666666
Q ss_pred CcccccCCcccccCCCCCcEEeccCCCCCC--CCchhccCCCCCcEEEccCCcCCCCCCccc--cCCCCceEecccccCC
Q 006206 280 NCRVSGKIPDQLGTFAKLQLLDLSFNKLTG--QIPTSLQDLSTLQYLYLGNNNLSGELPVNI--IAPNLIALDVSYNPLS 355 (657)
Q Consensus 280 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~~L~~LdLs~N~l~ 355 (657)
+|.+++.+|..+..+++|+.|++++|++++ .+|..+..+++|++|++++|++++.+|... .+++|++|+|++|+++
T Consensus 333 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~ 412 (520)
T 2z7x_B 333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412 (520)
T ss_dssp SSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC
T ss_pred CCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC
Confidence 666666566666666666666666666654 344556666666666666666665455331 2456666666666665
Q ss_pred CCCCccccCCCcEEEeecCCcC
Q 006206 356 GNLPRNFAKGGLSMNVIGSSIN 377 (657)
Q Consensus 356 g~~p~~~~~~~l~~~l~~n~~~ 377 (657)
+.+|..+....-.+++++|.+.
T Consensus 413 ~~~~~~l~~~L~~L~Ls~N~l~ 434 (520)
T 2z7x_B 413 DTIFRCLPPRIKVLDLHSNKIK 434 (520)
T ss_dssp GGGGGSCCTTCCEEECCSSCCC
T ss_pred cchhhhhcccCCEEECCCCccc
Confidence 5555443322222555555553
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.98 E-value=1.7e-31 Score=302.18 Aligned_cols=136 Identities=17% Similarity=0.142 Sum_probs=98.2
Q ss_pred CCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEE
Q 006206 78 SCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLS 157 (657)
Q Consensus 78 ~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 157 (657)
..++++|+++++.+.+..+..|.++++|++|+|++|.+++..|..|+++++|++|+|++|.+++..|..|+++++|++|+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 35677777777777776666777777777777777777766667777777777777777777766677777777777777
Q ss_pred eecccCCCCCchhhcCCCCCCeeecccccCCC-CCchhccCCCCCcEEEccCCcCCC
Q 006206 158 FSSNNFFGPLPKELGKLTSLQQLYIDSSGVTG-SIPQEFANLKSLRILWASDNLFTG 213 (657)
Q Consensus 158 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~ 213 (657)
|++|.+.+..+..++++++|++|++++|.+.+ .+|..+.++++|++|++++|++++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 77777766655667777777777777777764 456777777777777777666543
No 16
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.98 E-value=1.5e-31 Score=293.46 Aligned_cols=287 Identities=20% Similarity=0.141 Sum_probs=261.9
Q ss_pred CCCCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcE
Q 006206 76 SNSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLIS 155 (657)
Q Consensus 76 ~~~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 155 (657)
....++++|+|++|.+.+..|..|.++++|++|+|++|.++...+..|.++++|++|+|++|.+.+..|..|.++++|++
T Consensus 53 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 132 (477)
T 2id5_A 53 ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS 132 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCE
Confidence 45678999999999999988999999999999999999999666667899999999999999999888999999999999
Q ss_pred EEeecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCC
Q 006206 156 LSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLL 235 (657)
Q Consensus 156 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l 235 (657)
|+|++|.+.+..+..|.++++|++|+|++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|..
T Consensus 133 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~ 212 (477)
T 2id5_A 133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212 (477)
T ss_dssp EEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT
T ss_pred EECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc
Confidence 99999999988888999999999999999999987778899999999999999999988888899999999999999999
Q ss_pred CCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhc
Q 006206 236 EGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSL 315 (657)
Q Consensus 236 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l 315 (657)
.+.++.......+|++|++++|.+.......+..+++|++|+|++|.+++..+..+..+++|+.|+|++|++++..|..|
T Consensus 213 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 292 (477)
T 2id5_A 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292 (477)
T ss_dssp CCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTB
T ss_pred ccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHh
Confidence 88888887777899999999999998888889999999999999999998888889999999999999999998889999
Q ss_pred cCCCCCcEEEccCCcCCCCCCccc-cCCCCceEecccccCCCCCCccc
Q 006206 316 QDLSTLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNF 362 (657)
Q Consensus 316 ~~l~~L~~L~L~~N~l~~~~p~~~-~~~~L~~LdLs~N~l~g~~p~~~ 362 (657)
..+++|+.|+|++|++++..+..+ .+++|++|+|++|++....+..|
T Consensus 293 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~ 340 (477)
T 2id5_A 293 RGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLW 340 (477)
T ss_dssp TTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHH
T ss_pred cCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHh
Confidence 999999999999999996444333 47899999999999986654333
No 17
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=4e-31 Score=296.20 Aligned_cols=137 Identities=19% Similarity=0.189 Sum_probs=113.7
Q ss_pred CceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEe
Q 006206 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 158 (657)
Q Consensus 79 ~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 158 (657)
.++++|++++|.+.+..|..|.++++|++|+|++|.+++..|..|..+++|++|+|++|+++ .+|.. .+++|++|+|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 57999999999998888888999999999999999999878889999999999999999998 67766 8999999999
Q ss_pred ecccCCC-CCchhhcCCCCCCeeecccccCCCCCchhccCCCCC--cEEEccCCcC--CCCCchhcCC
Q 006206 159 SSNNFFG-PLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSL--RILWASDNLF--TGKIPEFFGT 221 (657)
Q Consensus 159 s~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L--~~L~Ls~n~l--~~~~~~~l~~ 221 (657)
++|++.+ .+|..|+++++|++|++++|.+.+. .+..+++| ++|++++|.+ ++..|..+..
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~ 193 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQI 193 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEE
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccc
Confidence 9999986 3467899999999999999998763 34444455 8888888887 5555544443
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=3.3e-31 Score=299.78 Aligned_cols=299 Identities=18% Similarity=0.134 Sum_probs=236.4
Q ss_pred CCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEE
Q 006206 78 SCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLS 157 (657)
Q Consensus 78 ~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 157 (657)
..++++|+++++.+.+..|..|.++++|++|+|++|.+.+..|..|+++++|++|+|++|++++..|..|+++++|++|+
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 45799999999999988899999999999999999999988899999999999999999999988899999999999999
Q ss_pred eecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCccc--EEEccCCCC
Q 006206 158 FSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELA--DLRLQGTLL 235 (657)
Q Consensus 158 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~--~L~l~~n~l 235 (657)
+++|.+++..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+ +|++++|.+
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 999999977677899999999999999999875444555699999999999999988888899999998 899999998
Q ss_pred CCCchhhccCC---------------------------------------------------CCCCeEEcCCCCCCCCCh
Q 006206 236 EGPIPRSFRAL---------------------------------------------------NKLEDLRIGDLSAEDSTL 264 (657)
Q Consensus 236 ~~~~~~~l~~l---------------------------------------------------~~L~~L~l~~~~~~~~~~ 264 (657)
.+..|..+... .+|+.|++++|.+.....
T Consensus 192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~ 271 (606)
T 3t6q_A 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271 (606)
T ss_dssp CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence 87666554321 045566666666666566
Q ss_pred hhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcCCCCCCccc--cCC
Q 006206 265 DFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI--IAP 342 (657)
Q Consensus 265 ~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~ 342 (657)
..+..+++|++|+|++|.++ .+|..+..+++|++|++++|++++..|..+..+++|+.|++++|.+.+.+|... .++
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 66677777777777777776 566667777777777777777776666667777777777777777776666432 357
Q ss_pred CCceEecccccCCCCC--CccccC-CCcE-EEeecCCcC
Q 006206 343 NLIALDVSYNPLSGNL--PRNFAK-GGLS-MNVIGSSIN 377 (657)
Q Consensus 343 ~L~~LdLs~N~l~g~~--p~~~~~-~~l~-~~l~~n~~~ 377 (657)
+|++|++++|++++.. |..+.. +.++ +++++|.+.
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 389 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCC
Confidence 7777777777776554 444444 4454 666666654
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=6.2e-31 Score=308.22 Aligned_cols=301 Identities=19% Similarity=0.188 Sum_probs=251.7
Q ss_pred CCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCC-chhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEE
Q 006206 78 SCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSI-PAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISL 156 (657)
Q Consensus 78 ~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 156 (657)
..++++|+|++|.+.+..|..|.++++|++|+|++|.+.+.+ |..|+++++|++|+|++|.+.+..|..|.++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 457999999999999888999999999999999999766666 7889999999999999999998889999999999999
Q ss_pred EeecccCCCCCchh--hcCCCCCCeeecccccCCCCCc-hhccCCCCCcEEEccCCcCCCCCchhcCCC--CcccEEEcc
Q 006206 157 SFSSNNFFGPLPKE--LGKLTSLQQLYIDSSGVTGSIP-QEFANLKSLRILWASDNLFTGKIPEFFGTL--TELADLRLQ 231 (657)
Q Consensus 157 ~Ls~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l--~~L~~L~l~ 231 (657)
+|++|.+.+.+|.. +.++++|++|+|++|.+.+..+ ..+.++++|++|+|++|.+.+..+..+..+ ++|+.|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 99999999877665 8999999999999999987654 678999999999999999998888888777 789999999
Q ss_pred CCCCCCCchhhccCCCC------CCeEEcCCCCCCCCChhh------------------------------------hhc
Q 006206 232 GTLLEGPIPRSFRALNK------LEDLRIGDLSAEDSTLDF------------------------------------LES 269 (657)
Q Consensus 232 ~n~l~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~~~------------------------------------l~~ 269 (657)
+|.+.+..|..+..+.+ |+.|++++|.+....+.. +..
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 99988887777666655 888888887554332211 111
Q ss_pred --CCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcCCCCCCccc-cCCCCce
Q 006206 270 --QKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI-IAPNLIA 346 (657)
Q Consensus 270 --~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~-~~~~L~~ 346 (657)
.++|++|+|++|.+.+..|..+..+++|+.|+|++|++++..|..|..+++|++|+|++|.+++..|..+ .+++|++
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence 2678899999998888888888888999999999999987778888888999999999999887666554 4788999
Q ss_pred EecccccCCCCCCccccC-CCcE-EEeecCCcCC
Q 006206 347 LDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSINA 378 (657)
Q Consensus 347 LdLs~N~l~g~~p~~~~~-~~l~-~~l~~n~~~~ 378 (657)
|+|++|++++..+..+.. +.|+ +++++|.+..
T Consensus 343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred EECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 999999988777666665 5665 7888887763
No 20
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=4.4e-31 Score=282.09 Aligned_cols=264 Identities=20% Similarity=0.183 Sum_probs=181.3
Q ss_pred CCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEE
Q 006206 78 SCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLS 157 (657)
Q Consensus 78 ~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 157 (657)
..+++.|++.++.+....+..+..+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 36789999999887654444578899999999999999877777999999999999999999988888899999999999
Q ss_pred eecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCC
Q 006206 158 FSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEG 237 (657)
Q Consensus 158 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 237 (657)
|++|.+....+..|.++++|++|++++|.+.+..+..+..+++|++|++++|++++.. +..+++|+.|++++|.+++
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccc
Confidence 9999998655555789999999999999999888888999999999999999998542 4456777777777776653
Q ss_pred CchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccC
Q 006206 238 PIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQD 317 (657)
Q Consensus 238 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 317 (657)
+...++|++|++++|.+..... ...++|++|+|++|.+++. ..+..+++|++|+|++|++++..|..+..
T Consensus 201 -----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (390)
T 3o6n_A 201 -----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK 270 (390)
T ss_dssp -----EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred -----cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc
Confidence 2223445555555554433211 1123445555555544432 23444445555555555554444444444
Q ss_pred CCCCcEEEccCCcCCCCCCccc-cCCCCceEecccccCC
Q 006206 318 LSTLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLS 355 (657)
Q Consensus 318 l~~L~~L~L~~N~l~~~~p~~~-~~~~L~~LdLs~N~l~ 355 (657)
+++|+.|+|++|++++ +|... .+++|++|+|++|+++
T Consensus 271 l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~ 308 (390)
T 3o6n_A 271 MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL 308 (390)
T ss_dssp CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC
T ss_pred cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce
Confidence 5555555555554443 22111 2344555555555444
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=4.3e-31 Score=298.77 Aligned_cols=301 Identities=18% Similarity=0.130 Sum_probs=239.3
Q ss_pred CCCCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcE
Q 006206 76 SNSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLIS 155 (657)
Q Consensus 76 ~~~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 155 (657)
....++++|++++|.+.+..|..|.++++|++|+|++|.+++..|..|+++++|++|+|++|.+++..+..|+++++|++
T Consensus 53 ~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 132 (606)
T 3vq2_A 53 SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132 (606)
T ss_dssp TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCE
T ss_pred cCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCE
Confidence 34567888888888887777777888888888888888888777788888888888888888887666677788888888
Q ss_pred EEeecccCCC-CCchhhcCCCCCCeeecccccCCCCCchh----------------------------------------
Q 006206 156 LSFSSNNFFG-PLPKELGKLTSLQQLYIDSSGVTGSIPQE---------------------------------------- 194 (657)
Q Consensus 156 L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~---------------------------------------- 194 (657)
|++++|.+.+ .+|..++++++|++|++++|++++..+..
T Consensus 133 L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~ 212 (606)
T 3vq2_A 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLR 212 (606)
T ss_dssp EECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEE
T ss_pred EeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeecc
Confidence 8888887765 45777777777777777777655332211
Q ss_pred --------------------------------------------------------------------------------
Q 006206 195 -------------------------------------------------------------------------------- 194 (657)
Q Consensus 195 -------------------------------------------------------------------------------- 194 (657)
T Consensus 213 ~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l 292 (606)
T 3vq2_A 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSL 292 (606)
T ss_dssp SCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEE
T ss_pred CCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEe
Confidence
Q ss_pred -----------------------------------------------------ccCCCCCcEEEccCCcCCCC--Cchhc
Q 006206 195 -----------------------------------------------------FANLKSLRILWASDNLFTGK--IPEFF 219 (657)
Q Consensus 195 -----------------------------------------------------l~~l~~L~~L~Ls~n~l~~~--~~~~l 219 (657)
+..+++|++|++++|.+++. ++..+
T Consensus 293 ~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~ 372 (606)
T 3vq2_A 293 AGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSD 372 (606)
T ss_dssp ESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHH
T ss_pred cCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhh
Confidence 11233445555555555433 26677
Q ss_pred CCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCCh-hhhhcCCCCCEEEccCcccccCCcccccCCCCCc
Q 006206 220 GTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTL-DFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQ 298 (657)
Q Consensus 220 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 298 (657)
..+++|++|++++|.+++ +|..+..+++|+.|++++|.+....+ ..+..+++|++|++++|.+++..|..+..+++|+
T Consensus 373 ~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 451 (606)
T 3vq2_A 373 LGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN 451 (606)
T ss_dssp HCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred ccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCC
Confidence 788999999999999874 66888999999999999998877655 6788999999999999999988999999999999
Q ss_pred EEeccCCCCCCC-CchhccCCCCCcEEEccCCcCCCCCCccc-cCCCCceEecccccCCCCCCccccC-CCcE-EEeecC
Q 006206 299 LLDLSFNKLTGQ-IPTSLQDLSTLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGS 374 (657)
Q Consensus 299 ~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p~~~-~~~~L~~LdLs~N~l~g~~p~~~~~-~~l~-~~l~~n 374 (657)
+|++++|++++. +|..+..+++|+.|+|++|++++..|..+ .+++|++|+|++|++++.+|..+.. +.|+ +++++|
T Consensus 452 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 452 TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred EEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC
Confidence 999999999873 78889999999999999999998777655 5799999999999999988888877 6665 899999
Q ss_pred CcC
Q 006206 375 SIN 377 (657)
Q Consensus 375 ~~~ 377 (657)
++.
T Consensus 532 ~l~ 534 (606)
T 3vq2_A 532 RIE 534 (606)
T ss_dssp CCC
T ss_pred cCc
Confidence 886
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=9.6e-31 Score=295.01 Aligned_cols=301 Identities=16% Similarity=0.104 Sum_probs=201.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCeeeecCC--------CCCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCC
Q 006206 45 SKINLTTIDPCTRNASWASENANPRVACDCTS--------NSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLN 116 (657)
Q Consensus 45 ~~w~~~~~d~C~~~~~W~~~~~~~~v~C~~~~--------~~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~ 116 (657)
..|... .+||.....|.+...+..+.|.... ...+++.+++.++.+....+..+..+++|++|+|++|.++
T Consensus 10 ~~~~~~-~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~ 88 (597)
T 3oja_B 10 KPRQPE-YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 88 (597)
T ss_dssp -CCCSE-ECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC
T ss_pred cCCCCC-CcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC
Confidence 457766 6777644456421111122221110 1246788999988886655556788999999999999999
Q ss_pred CCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeecccccCCCCCchhcc
Q 006206 117 GSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFA 196 (657)
Q Consensus 117 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 196 (657)
+..|..|+.+++|++|+|++|.+++..|..|+++++|++|+|++|.+++..+..|.++++|++|+|++|.+++..|..+.
T Consensus 89 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 168 (597)
T 3oja_B 89 EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 168 (597)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT
T ss_pred CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhh
Confidence 87788999999999999999999988888899999999999999999966666679999999999999999988888999
Q ss_pred CCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCC-------------
Q 006206 197 NLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDST------------- 263 (657)
Q Consensus 197 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~------------- 263 (657)
.+++|++|++++|.+++.. +..+++|+.|++++|.+++ +...++|+.|++++|.+....
T Consensus 169 ~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~ 240 (597)
T 3oja_B 169 ATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPVNVELTILKLQ 240 (597)
T ss_dssp TCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSCCSCCCEEECC
T ss_pred cCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccccccccCCCCCEEECC
Confidence 9999999999999998653 4456677777777776653 222334444544444433221
Q ss_pred ------hhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcCCCCCCc
Q 006206 264 ------LDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPV 337 (657)
Q Consensus 264 ------~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 337 (657)
+..+..+++|++|+|++|.+++..|..+..+++|+.|+|++|++++ +|..+..+++|+.|+|++|.++ .+|.
T Consensus 241 ~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~ 318 (597)
T 3oja_B 241 HNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVER 318 (597)
T ss_dssp SSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGG
T ss_pred CCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCc
Confidence 2344455555555555555555555555555555555555555542 3444444555555555555555 3332
Q ss_pred cc-cCCCCceEecccccCCC
Q 006206 338 NI-IAPNLIALDVSYNPLSG 356 (657)
Q Consensus 338 ~~-~~~~L~~LdLs~N~l~g 356 (657)
.+ .+++|+.|+|++|++++
T Consensus 319 ~~~~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 319 NQPQFDRLENLYLDHNSIVT 338 (597)
T ss_dssp GHHHHTTCSEEECCSSCCCC
T ss_pred ccccCCCCCEEECCCCCCCC
Confidence 22 24555555555555543
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.8e-30 Score=288.06 Aligned_cols=292 Identities=18% Similarity=0.221 Sum_probs=226.7
Q ss_pred CCCCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCC-CCCccccCCCCCc
Q 006206 76 SNSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTG-RVPTELGNLTKLI 154 (657)
Q Consensus 76 ~~~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~ 154 (657)
....++++|++++|.+.+..|..|.++++|++|+|++|.++ .+|.. .+++|++|+|++|.+++ .+|..|+++++|+
T Consensus 42 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~ 118 (520)
T 2z7x_B 42 LSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118 (520)
T ss_dssp TTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCC
T ss_pred cccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcce
Confidence 45678999999999999888999999999999999999998 67766 89999999999999987 5789999999999
Q ss_pred EEEeecccCCCCCchhhcCCCCC--CeeecccccC--CCCCchhccCCC-------------------------------
Q 006206 155 SLSFSSNNFFGPLPKELGKLTSL--QQLYIDSSGV--TGSIPQEFANLK------------------------------- 199 (657)
Q Consensus 155 ~L~Ls~n~l~~~~p~~l~~l~~L--~~L~Ls~n~l--~~~~p~~l~~l~------------------------------- 199 (657)
+|++++|.+.+ ..+..+++| ++|++++|.+ .+..|..+..+.
T Consensus 119 ~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L 195 (520)
T 2z7x_B 119 FLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195 (520)
T ss_dssp EEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEEC
T ss_pred EEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeec
Confidence 99999999875 346666777 8888888887 555565554432
Q ss_pred ----------------------------------------------------CCcEEEccCCcCCCCCchhc-----CCC
Q 006206 200 ----------------------------------------------------SLRILWASDNLFTGKIPEFF-----GTL 222 (657)
Q Consensus 200 ----------------------------------------------------~L~~L~Ls~n~l~~~~~~~l-----~~l 222 (657)
+|++|++++|++.+.+|..+ ..+
T Consensus 196 ~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l 275 (520)
T 2z7x_B 196 NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSL 275 (520)
T ss_dssp CEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCC
T ss_pred cccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccC
Confidence 67778888888887788777 677
Q ss_pred CcccEEEccCCCCCCCch-hh-------------------------ccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEE
Q 006206 223 TELADLRLQGTLLEGPIP-RS-------------------------FRALNKLEDLRIGDLSAEDSTLDFLESQKSLSIL 276 (657)
Q Consensus 223 ~~L~~L~l~~n~l~~~~~-~~-------------------------l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 276 (657)
++|+.+++++|.+ .+| .. ...+++|++|++++|.+....+..+..+++|++|
T Consensus 276 ~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 353 (520)
T 2z7x_B 276 KALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETL 353 (520)
T ss_dssp CEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEE
T ss_pred ceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEE
Confidence 7777777666665 222 11 1567788888888888777667777788888888
Q ss_pred EccCccccc--CCcccccCCCCCcEEeccCCCCCCCCchh-ccCCCCCcEEEccCCcCCCCCCccccCCCCceEeccccc
Q 006206 277 SLRNCRVSG--KIPDQLGTFAKLQLLDLSFNKLTGQIPTS-LQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNP 353 (657)
Q Consensus 277 ~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~LdLs~N~ 353 (657)
+|++|++++ .+|..+..+++|++|++++|++++.+|.. +..+++|+.|++++|++++.+|..+. ++|++|||++|+
T Consensus 354 ~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~~L~~L~Ls~N~ 432 (520)
T 2z7x_B 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP-PRIKVLDLHSNK 432 (520)
T ss_dssp ECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC-TTCCEEECCSSC
T ss_pred EccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc-ccCCEEECCCCc
Confidence 888888875 45667788888888888888888656653 67778888888888888776664332 678888888888
Q ss_pred CCCCCCccccC-CCcE-EEeecCCcC
Q 006206 354 LSGNLPRNFAK-GGLS-MNVIGSSIN 377 (657)
Q Consensus 354 l~g~~p~~~~~-~~l~-~~l~~n~~~ 377 (657)
++ .+|..+.. +.|+ +++++|++.
T Consensus 433 l~-~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 433 IK-SIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp CC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred cc-ccchhhhcCCCCCEEECCCCcCC
Confidence 87 67766655 5555 788888775
No 24
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=6.7e-30 Score=266.53 Aligned_cols=286 Identities=22% Similarity=0.271 Sum_probs=235.3
Q ss_pred ceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEee
Q 006206 80 HITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 159 (657)
Q Consensus 80 ~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 159 (657)
+++.++++++.+. .+|..+. +.|++|+|++|.+++..+..|+.+++|++|+|++|.+++..|..|.++++|++|+|+
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 5788888888775 4565443 689999999999997777789999999999999999998889999999999999999
Q ss_pred cccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCC--CCchhcCCCCcccEEEccCCCCCC
Q 006206 160 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG--KIPEFFGTLTELADLRLQGTLLEG 237 (657)
Q Consensus 160 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~ 237 (657)
+|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++.
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 99987 5565554 799999999999998888889999999999999999863 667788999999999999999884
Q ss_pred CchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccC
Q 006206 238 PIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQD 317 (657)
Q Consensus 238 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 317 (657)
+|..+. ++|++|++++|.+....+..+..+++|++|+|++|.+++..+..+..+++|+.|+|++|+++ .+|..+..
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence 554443 78999999999888877888899999999999999999877778888999999999999998 78888999
Q ss_pred CCCCcEEEccCCcCCCCCCccc-------cCCCCceEecccccCCC--CCCccccC-CCcE-EEeecCC
Q 006206 318 LSTLQYLYLGNNNLSGELPVNI-------IAPNLIALDVSYNPLSG--NLPRNFAK-GGLS-MNVIGSS 375 (657)
Q Consensus 318 l~~L~~L~L~~N~l~~~~p~~~-------~~~~L~~LdLs~N~l~g--~~p~~~~~-~~l~-~~l~~n~ 375 (657)
+++|++|++++|++++..+..+ ..+.++.|++++|++.. ..|..+.. ..++ +++++|+
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 9999999999999985443332 13678899999999863 33444444 4554 6776663
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=3.9e-30 Score=294.97 Aligned_cols=300 Identities=19% Similarity=0.218 Sum_probs=249.7
Q ss_pred CCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEE
Q 006206 78 SCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLS 157 (657)
Q Consensus 78 ~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 157 (657)
..++++|+++++.+.+..+..|.++++|++|+|++|.+++..|..++++++|++|+|++|.+++..+..|.++++|++|+
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 35899999999999988778899999999999999999988899999999999999999999965555799999999999
Q ss_pred eecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcC--CCCcccEEEccCCCC
Q 006206 158 FSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFG--TLTELADLRLQGTLL 235 (657)
Q Consensus 158 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~l~~n~l 235 (657)
|++|.+.+..|..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 999999987778899999999999999999998889999999999999999999988777654 568999999999999
Q ss_pred CCCchhhccCC---------------------------CCCCeEEcCCCCCCCCChhhhhcCCC--CCEEEccCcccccC
Q 006206 236 EGPIPRSFRAL---------------------------NKLEDLRIGDLSAEDSTLDFLESQKS--LSILSLRNCRVSGK 286 (657)
Q Consensus 236 ~~~~~~~l~~l---------------------------~~L~~L~l~~~~~~~~~~~~l~~~~~--L~~L~Ls~n~l~~~ 286 (657)
++..|..+..+ ++|+.|++++|.+....+..+..++. |++|+|++|.+++.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 98887776655 45666677776666655666666644 89999999988887
Q ss_pred CcccccCCCCCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcCCC-----CCCc----c-ccCCCCceEecccccCCC
Q 006206 287 IPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSG-----ELPV----N-IIAPNLIALDVSYNPLSG 356 (657)
Q Consensus 287 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~-----~~p~----~-~~~~~L~~LdLs~N~l~g 356 (657)
.|..+..+++|+.|++++|++++..|..+..+++|+.|++++|...+ .+|. . ..+++|++|++++|++++
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 88888888999999999998887778788888888888888776554 2331 1 136788888888888888
Q ss_pred CCCccccC-CCcE-EEeecCCcC
Q 006206 357 NLPRNFAK-GGLS-MNVIGSSIN 377 (657)
Q Consensus 357 ~~p~~~~~-~~l~-~~l~~n~~~ 377 (657)
..|..+.. +.++ +++++|.+.
T Consensus 344 ~~~~~~~~l~~L~~L~Ls~n~~~ 366 (680)
T 1ziw_A 344 IKSNMFTGLINLKYLSLSNSFTS 366 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTCBSC
T ss_pred CChhHhccccCCcEEECCCCchh
Confidence 77766665 5555 777777543
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=7e-30 Score=286.12 Aligned_cols=292 Identities=20% Similarity=0.236 Sum_probs=185.9
Q ss_pred CCCCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCC-CCCccccCCCCCc
Q 006206 76 SNSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTG-RVPTELGNLTKLI 154 (657)
Q Consensus 76 ~~~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~ 154 (657)
....++++|++++|.+.+..|..|.++++|++|+|++|.++ .+|.. .+++|++|+|++|++++ .+|..|+++++|+
T Consensus 73 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~ 149 (562)
T 3a79_B 73 SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLT 149 (562)
T ss_dssp TTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCC
T ss_pred ccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCccc
Confidence 45678999999999999888999999999999999999998 67766 89999999999999986 4568999999999
Q ss_pred EEEeecccCCCCCchhhcCCCCC--CeeecccccC--CCCCchhccCCC-------------------------------
Q 006206 155 SLSFSSNNFFGPLPKELGKLTSL--QQLYIDSSGV--TGSIPQEFANLK------------------------------- 199 (657)
Q Consensus 155 ~L~Ls~n~l~~~~p~~l~~l~~L--~~L~Ls~n~l--~~~~p~~l~~l~------------------------------- 199 (657)
+|++++|.+.+.. +..+++| ++|++++|.+ ++..|..+..+.
T Consensus 150 ~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L 226 (562)
T 3a79_B 150 FLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226 (562)
T ss_dssp EEEEECSBCCTTT---TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEE
T ss_pred EEecCCCccccCc---hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEe
Confidence 9999999998643 4444555 9999999988 666665554433
Q ss_pred --------------------------------------------------CCcEEEccCCcCCCCCchhc----------
Q 006206 200 --------------------------------------------------SLRILWASDNLFTGKIPEFF---------- 219 (657)
Q Consensus 200 --------------------------------------------------~L~~L~Ls~n~l~~~~~~~l---------- 219 (657)
+|++|++++|.+.+.+|..+
T Consensus 227 ~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~ 306 (562)
T 3a79_B 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKS 306 (562)
T ss_dssp EEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCE
T ss_pred cccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchh
Confidence 56677777777776666554
Q ss_pred -------------------------------------------CCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCC
Q 006206 220 -------------------------------------------GTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGD 256 (657)
Q Consensus 220 -------------------------------------------~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 256 (657)
..+++|++|++++|.+++.+|..+..+++|+.|++++
T Consensus 307 L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 386 (562)
T 3a79_B 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR 386 (562)
T ss_dssp EEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCS
T ss_pred eehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCC
Confidence 3444555555555555554555555555555555555
Q ss_pred CCCCCCC--hhhhhcCCCCCEEEccCcccccCCcc-cccCCCCCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcCCC
Q 006206 257 LSAEDST--LDFLESQKSLSILSLRNCRVSGKIPD-QLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSG 333 (657)
Q Consensus 257 ~~~~~~~--~~~l~~~~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 333 (657)
|.+.... +..+..+++|++|+|++|.+++.+|. .+..+++|+.|++++|++++.+|..+. ++|+.|+|++|+++
T Consensus 387 N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~- 463 (562)
T 3a79_B 387 NGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM- 463 (562)
T ss_dssp SCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-
T ss_pred CCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-
Confidence 5444332 22344555555555555555543332 244455555555555555544443322 35555555555555
Q ss_pred CCCccc-cCCCCceEecccccCCCCCCcc-ccC-CCcE-EEeecCCcC
Q 006206 334 ELPVNI-IAPNLIALDVSYNPLSGNLPRN-FAK-GGLS-MNVIGSSIN 377 (657)
Q Consensus 334 ~~p~~~-~~~~L~~LdLs~N~l~g~~p~~-~~~-~~l~-~~l~~n~~~ 377 (657)
.+|... .+++|++|+|++|+|+ .+|.. +.. +.++ +++.+|++.
T Consensus 464 ~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 464 SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBC
T ss_pred ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcC
Confidence 344322 3455555555555555 23333 322 3333 455555544
No 27
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=2.6e-30 Score=290.12 Aligned_cols=133 Identities=20% Similarity=0.198 Sum_probs=76.5
Q ss_pred ceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEee
Q 006206 80 HITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 159 (657)
Q Consensus 80 ~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 159 (657)
+++.|+++++.+.+..+..|.++++|++|+|++|.+++..+..|+++++|++|+|++|.+++..|..|.++++|++|+++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 45666666666655555556666666666666666655445556666666666666666655545555566666666666
Q ss_pred cccCCCCCchhhcCCCCCCeeecccccCCC-CCchhccCCCCCcEEEccCCcCC
Q 006206 160 SNNFFGPLPKELGKLTSLQQLYIDSSGVTG-SIPQEFANLKSLRILWASDNLFT 212 (657)
Q Consensus 160 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~ 212 (657)
+|.+.+..+..++++++|++|++++|.+.+ .+|..+.++++|++|++++|++.
T Consensus 109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp TSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred ccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence 655554433345555555555555555554 34555555555555555555444
No 28
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=7.7e-31 Score=273.12 Aligned_cols=269 Identities=21% Similarity=0.309 Sum_probs=187.1
Q ss_pred CCCHHHHHHHHHHHHhcCC-C----CCCC---CCCCCCCCCCCCCCCCCCCCCeeeecC------CCCCceeEEEEecCC
Q 006206 25 STDSAEVDALNKLIDYWNL-R----SKIN---LTTIDPCTRNASWASENANPRVACDCT------SNSCHITHLKIYALD 90 (657)
Q Consensus 25 ~~~~~e~~aL~~~~~~~~~-~----~~w~---~~~~d~C~~~~~W~~~~~~~~v~C~~~------~~~~~v~~L~l~~~~ 90 (657)
..-.+|.+||.+++..+.. . ..|. ....++|. | .|+.|... ....+++.|+++++.
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~----~------~g~~~~~~~~~l~~~~~~~l~~L~L~~n~ 92 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIET----R------TGRALKATADLLEDATQPGRVALELRSVP 92 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCC----S------HHHHHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccc----c------CCcchhhhHHHHhcccccceeEEEccCCC
Confidence 3455789999999987732 2 3352 22256665 6 57777421 234578888888888
Q ss_pred CCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchh
Q 006206 91 IMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKE 170 (657)
Q Consensus 91 l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~ 170 (657)
+. .+|+.+.++++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..+.++++|++|+|++|++.+.+|..
T Consensus 93 l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~ 169 (328)
T 4fcg_A 93 LP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEP 169 (328)
T ss_dssp CS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSC
T ss_pred ch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChh
Confidence 76 77777888888888888888887 77888888888888888888887 77888888888888888888777777776
Q ss_pred hcC---------CCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchh
Q 006206 171 LGK---------LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPR 241 (657)
Q Consensus 171 l~~---------l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 241 (657)
+.. +++|++|+|++|.++ .+|..+..+++|++|+|++|++++ +|..+..+++|++|++++|.+.+.+|.
T Consensus 170 ~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~ 247 (328)
T 4fcg_A 170 LASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPP 247 (328)
T ss_dssp SEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCC
T ss_pred HhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHH
Confidence 543 556666666666655 455555556666666666665553 333455555555555555555554444
Q ss_pred hccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCCCCC
Q 006206 242 SFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTL 321 (657)
Q Consensus 242 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 321 (657)
.+..+++|++|+|++|.+.+.+|..+..+++|++|+|++|++.+.+|..+..+++|
T Consensus 248 ------------------------~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L 303 (328)
T 4fcg_A 248 ------------------------IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303 (328)
T ss_dssp ------------------------CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTT
T ss_pred ------------------------HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCc
Confidence 44555666666777777777777777778888888888888777888888888888
Q ss_pred cEEEccCCcCC
Q 006206 322 QYLYLGNNNLS 332 (657)
Q Consensus 322 ~~L~L~~N~l~ 332 (657)
+.+++..|.+.
T Consensus 304 ~~l~l~~~~~~ 314 (328)
T 4fcg_A 304 CIILVPPHLQA 314 (328)
T ss_dssp CEEECCGGGSC
T ss_pred eEEeCCHHHHH
Confidence 88887766654
No 29
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=4.7e-30 Score=267.94 Aligned_cols=285 Identities=23% Similarity=0.293 Sum_probs=237.4
Q ss_pred ceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEee
Q 006206 80 HITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 159 (657)
Q Consensus 80 ~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 159 (657)
+++.++++++++. .+|..+. ++|++|++++|.+++..|..|..+++|++|+|++|.+++..|..|.++++|++|+|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 5788999888875 6676553 789999999999987777889999999999999999998889999999999999999
Q ss_pred cccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCC--CCCchhcCCCCcccEEEccCCCCCC
Q 006206 160 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFT--GKIPEFFGTLTELADLRLQGTLLEG 237 (657)
Q Consensus 160 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~--~~~~~~l~~l~~L~~L~l~~n~l~~ 237 (657)
+|.+. .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+. +..+..+..+ +|++|++++|.+++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 99998 5665554 79999999999999777777999999999999999996 3667777777 89999999999985
Q ss_pred CchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccC
Q 006206 238 PIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQD 317 (657)
Q Consensus 238 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 317 (657)
+|..+. ++|++|++++|.+....+..+..+++|++|+|++|.+++..+..+..+++|+.|+|++|+++ .+|..+..
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 555443 78999999999998888788899999999999999999888888999999999999999998 78888999
Q ss_pred CCCCcEEEccCCcCCCCCCcccc-------CCCCceEecccccCC--CCCCccccC-CCcE-EEeecCC
Q 006206 318 LSTLQYLYLGNNNLSGELPVNII-------APNLIALDVSYNPLS--GNLPRNFAK-GGLS-MNVIGSS 375 (657)
Q Consensus 318 l~~L~~L~L~~N~l~~~~p~~~~-------~~~L~~LdLs~N~l~--g~~p~~~~~-~~l~-~~l~~n~ 375 (657)
+++|+.|++++|++++..+..+. .++|+.|++++|++. +..|..+.. +.++ +++.+|.
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 99999999999999854443321 366889999999987 445555544 5554 6666653
No 30
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=3.2e-30 Score=289.37 Aligned_cols=299 Identities=19% Similarity=0.176 Sum_probs=216.2
Q ss_pred CCCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEE
Q 006206 77 NSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISL 156 (657)
Q Consensus 77 ~~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 156 (657)
...++++|++++|.+.+..|..|.++++|++|+|++|.+++..|..|+.+++|++|++++|++++..+..|+++++|++|
T Consensus 50 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 129 (570)
T 2z63_A 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129 (570)
T ss_dssp TCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEE
T ss_pred CCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEE
Confidence 45577888888888777666777888888888888888776666777788888888888887775544467777888888
Q ss_pred EeecccCCC-CCchhhcCCCCCCeeecccccCCCCCchhc----------------------------------------
Q 006206 157 SFSSNNFFG-PLPKELGKLTSLQQLYIDSSGVTGSIPQEF---------------------------------------- 195 (657)
Q Consensus 157 ~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l---------------------------------------- 195 (657)
++++|.+.+ .+|..++++++|++|++++|.+++..+..+
T Consensus 130 ~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 209 (570)
T 2z63_A 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 209 (570)
T ss_dssp ECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEES
T ss_pred ecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEeccc
Confidence 888777765 357777777777777777776554332222
Q ss_pred ---------------------------------------------------------------------cCCCCCcEEEc
Q 006206 196 ---------------------------------------------------------------------ANLKSLRILWA 206 (657)
Q Consensus 196 ---------------------------------------------------------------------~~l~~L~~L~L 206 (657)
..+++|+.|++
T Consensus 210 n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l 289 (570)
T 2z63_A 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289 (570)
T ss_dssp CCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEE
T ss_pred ccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEe
Confidence 22344444444
Q ss_pred cCCcCCCCCchhc------------------------------------------CCCCcccEEEccCCCCCCCc--hhh
Q 006206 207 SDNLFTGKIPEFF------------------------------------------GTLTELADLRLQGTLLEGPI--PRS 242 (657)
Q Consensus 207 s~n~l~~~~~~~l------------------------------------------~~l~~L~~L~l~~n~l~~~~--~~~ 242 (657)
++|.+.+ +|..+ ..+++|++|++++|.+++.. +..
T Consensus 290 ~~~~l~~-l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 368 (570)
T 2z63_A 290 VSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS 368 (570)
T ss_dssp ESCEECS-CCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHH
T ss_pred cCccchh-hhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccccccc
Confidence 4444431 22211 35677888888888887543 677
Q ss_pred ccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCc-ccccCCCCCcEEeccCCCCCCCCchhccCCCCC
Q 006206 243 FRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIP-DQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTL 321 (657)
Q Consensus 243 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 321 (657)
+..+++|+.|++++|.+...... +..+++|++|++++|.+.+..| ..+..+++|+.|++++|++.+..|..+..+++|
T Consensus 369 ~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 447 (570)
T 2z63_A 369 DFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447 (570)
T ss_dssp HHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred ccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC
Confidence 88889999999988877655444 7778888888888888886655 467788888888888888887778788888888
Q ss_pred cEEEccCCcCC-CCCCccc-cCCCCceEecccccCCCCCCccccC-CCcE-EEeecCCcC
Q 006206 322 QYLYLGNNNLS-GELPVNI-IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSIN 377 (657)
Q Consensus 322 ~~L~L~~N~l~-~~~p~~~-~~~~L~~LdLs~N~l~g~~p~~~~~-~~l~-~~l~~n~~~ 377 (657)
+.|+|++|.++ +.+|..+ .+++|++|+|++|++++..|..+.. +.|+ +++.+|++.
T Consensus 448 ~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 507 (570)
T 2z63_A 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507 (570)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC
Confidence 88888888887 4677544 4688888888888888777777766 5565 788888775
No 31
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=5.7e-30 Score=290.70 Aligned_cols=139 Identities=19% Similarity=0.176 Sum_probs=125.0
Q ss_pred CCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEE
Q 006206 78 SCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLS 157 (657)
Q Consensus 78 ~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 157 (657)
+.++++|+|++|.+.+..+..|.++++|++|+|++|.+++..+.+|.++++|++|+|++|++++..+..|.++++|++|+
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 35799999999999887788899999999999999999977778899999999999999999976677899999999999
Q ss_pred eecccCCCCCchhhcCCCCCCeeecccccCCC-CCchhccCCCCCcEEEccCCcCCCCCc
Q 006206 158 FSSNNFFGPLPKELGKLTSLQQLYIDSSGVTG-SIPQEFANLKSLRILWASDNLFTGKIP 216 (657)
Q Consensus 158 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~ 216 (657)
|++|++++..+..|+++++|++|+|++|.+.+ ..|..+..+++|++|++++|++++..+
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence 99999998777789999999999999999975 468888999999999999998765433
No 32
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=1.3e-29 Score=290.51 Aligned_cols=296 Identities=22% Similarity=0.240 Sum_probs=201.0
Q ss_pred eeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCC-----CCCc----cccCCC
Q 006206 81 ITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTG-----RVPT----ELGNLT 151 (657)
Q Consensus 81 v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-----~~p~----~~~~l~ 151 (657)
++.|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|...+ .+|. .|..++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 6666776666666666666666777777777666665555555555555555555443222 1221 344555
Q ss_pred CCcEEEeecccCCCCCchhhcCCCCCC----------------------------eeecccccCCCCCchhccCCCCCcE
Q 006206 152 KLISLSFSSNNFFGPLPKELGKLTSLQ----------------------------QLYIDSSGVTGSIPQEFANLKSLRI 203 (657)
Q Consensus 152 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~----------------------------~L~Ls~n~l~~~~p~~l~~l~~L~~ 203 (657)
+|++|++++|.+.+..+..|.++++|+ .|++++|++++..|..+..+++|+.
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 555555555555555444444444444 4444555566566777888889999
Q ss_pred EEccCCcCCCCCc-hhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCC--CChhhhhcCCCCCEEEccC
Q 006206 204 LWASDNLFTGKIP-EFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAED--STLDFLESQKSLSILSLRN 280 (657)
Q Consensus 204 L~Ls~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~Ls~ 280 (657)
|++++|.+.+.+| ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ..+..+..+++|++|+|++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence 9999998876555 677888888888888888887777788888888888888877653 3456677788888888888
Q ss_pred cccccCCcccccCCCCCcEEeccCCCCCCCCc--------hhccCCCCCcEEEccCCcCCCCCCcc-c-cCCCCceEecc
Q 006206 281 CRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIP--------TSLQDLSTLQYLYLGNNNLSGELPVN-I-IAPNLIALDVS 350 (657)
Q Consensus 281 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p--------~~l~~l~~L~~L~L~~N~l~~~~p~~-~-~~~~L~~LdLs 350 (657)
|++++..+..+..+++|+.|+|++|++++..+ ..+..+++|+.|+|++|+++ .+|.. + .+++|++|||+
T Consensus 490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls 568 (680)
T 1ziw_A 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLG 568 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECC
Confidence 88887666777888888888888888764311 23677788888888888887 55543 2 46788888888
Q ss_pred cccCCCCCCccccC-CCcE-EEeecCCcC
Q 006206 351 YNPLSGNLPRNFAK-GGLS-MNVIGSSIN 377 (657)
Q Consensus 351 ~N~l~g~~p~~~~~-~~l~-~~l~~n~~~ 377 (657)
+|++++..+..+.. ..|+ +++++|.+.
T Consensus 569 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 569 LNNLNTLPASVFNNQVSLKSLNLQKNLIT 597 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred CCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence 88888655544444 5555 788888775
No 33
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=2.2e-29 Score=295.10 Aligned_cols=299 Identities=19% Similarity=0.198 Sum_probs=251.1
Q ss_pred CCCCceeEEEEecCCCCccC-ChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCcc--ccCCCC
Q 006206 76 SNSCHITHLKIYALDIMGEL-PSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTE--LGNLTK 152 (657)
Q Consensus 76 ~~~~~v~~L~l~~~~l~~~l-p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--~~~l~~ 152 (657)
....+++.|+++++...+.+ |..|.++++|++|+|++|.+.+..|..|+++++|++|+|++|.+++.+|.. |.++++
T Consensus 45 ~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~ 124 (844)
T 3j0a_A 45 PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124 (844)
T ss_dssp SSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSS
T ss_pred cccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCC
Confidence 45678999999999777777 678999999999999999999888999999999999999999999877765 899999
Q ss_pred CcEEEeecccCCCCCc-hhhcCCCCCCeeecccccCCCCCchhccCC--CCCcEEEccCCcCCCCCchhcCCCCc-----
Q 006206 153 LISLSFSSNNFFGPLP-KELGKLTSLQQLYIDSSGVTGSIPQEFANL--KSLRILWASDNLFTGKIPEFFGTLTE----- 224 (657)
Q Consensus 153 L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l--~~L~~L~Ls~n~l~~~~~~~l~~l~~----- 224 (657)
|++|+|++|.+.+..+ ..|+++++|++|+|++|.+++..+..+..+ ++|+.|++++|.+.+..|..+..+++
T Consensus 125 L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 204 (844)
T 3j0a_A 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204 (844)
T ss_dssp CCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTC
T ss_pred CCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccC
Confidence 9999999999987655 579999999999999999998888888877 89999999999999888777766665
Q ss_pred -ccEEEccCCCCCCCchhhccC--------------------------------------CCCCCeEEcCCCCCCCCChh
Q 006206 225 -LADLRLQGTLLEGPIPRSFRA--------------------------------------LNKLEDLRIGDLSAEDSTLD 265 (657)
Q Consensus 225 -L~~L~l~~n~l~~~~~~~l~~--------------------------------------l~~L~~L~l~~~~~~~~~~~ 265 (657)
|++|++++|.+++..+..+.. .++|+.|++++|.+....+.
T Consensus 205 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~ 284 (844)
T 3j0a_A 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR 284 (844)
T ss_dssp CBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC
T ss_pred ceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChh
Confidence 899999999877655544322 26788999999888777777
Q ss_pred hhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcCCCCCCccc-cCCCC
Q 006206 266 FLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI-IAPNL 344 (657)
Q Consensus 266 ~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~-~~~~L 344 (657)
.+..+++|++|+|++|.+++..|..+..+++|++|+|++|++++..|..|..+++|+.|+|++|.+++..+..+ .+++|
T Consensus 285 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L 364 (844)
T 3j0a_A 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL 364 (844)
T ss_dssp CSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCC
T ss_pred hhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCC
Confidence 78889999999999999998888889999999999999999988778889999999999999999986555444 47899
Q ss_pred ceEecccccCCCCCCccccCCCcEEEeecCCcC
Q 006206 345 IALDVSYNPLSGNLPRNFAKGGLSMNVIGSSIN 377 (657)
Q Consensus 345 ~~LdLs~N~l~g~~p~~~~~~~l~~~l~~n~~~ 377 (657)
++|+|++|.+++. +. ....-.+.+.+|++.
T Consensus 365 ~~L~Ls~N~l~~i-~~--~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 365 QTLDLRDNALTTI-HF--IPSIPDIFLSGNKLV 394 (844)
T ss_dssp CEEEEETCCSCCC-SS--CCSCSEEEEESCCCC
T ss_pred CEEECCCCCCCcc-cC--CCCcchhccCCCCcc
Confidence 9999999998842 21 112223677777765
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.2e-28 Score=257.05 Aligned_cols=269 Identities=19% Similarity=0.208 Sum_probs=233.8
Q ss_pred CCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEE
Q 006206 78 SCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLS 157 (657)
Q Consensus 78 ~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 157 (657)
..+++.|+++++.+.+..+..+.++++|++|+|++|.+++..|..|+.+++|++|+|++|.++ .+|..+. ++|++|+
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELR 127 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEE
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEE
Confidence 457899999999998877778999999999999999999888999999999999999999998 6676654 7999999
Q ss_pred eecccCCCCCchhhcCCCCCCeeecccccCCC--CCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCC
Q 006206 158 FSSNNFFGPLPKELGKLTSLQQLYIDSSGVTG--SIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLL 235 (657)
Q Consensus 158 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l 235 (657)
+++|.+.+..+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.+.. +|..+. ++|++|++++|.+
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l 204 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKI 204 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCC
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcC
Confidence 99999998888889999999999999999963 677889999999999999999984 555443 8999999999999
Q ss_pred CCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhc
Q 006206 236 EGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSL 315 (657)
Q Consensus 236 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l 315 (657)
++..+..+..+++|+.|++++|.+....+..+..+++|++|+|++|.++ .+|..+..+++|++|++++|++++..+..|
T Consensus 205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence 9888899999999999999999998877778899999999999999999 788889999999999999999997666666
Q ss_pred cC------CCCCcEEEccCCcCCC-CC-Cccc-cCCCCceEeccccc
Q 006206 316 QD------LSTLQYLYLGNNNLSG-EL-PVNI-IAPNLIALDVSYNP 353 (657)
Q Consensus 316 ~~------l~~L~~L~L~~N~l~~-~~-p~~~-~~~~L~~LdLs~N~ 353 (657)
.. .+.|+.|++++|.+.. .+ |..+ .+.+++.++|++|+
T Consensus 284 ~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 43 3789999999999864 23 3333 36899999999985
No 35
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.1e-29 Score=267.53 Aligned_cols=263 Identities=22% Similarity=0.225 Sum_probs=225.0
Q ss_pred cCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcC
Q 006206 94 ELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGK 173 (657)
Q Consensus 94 ~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 173 (657)
.+|..+. ++|++|++++|.+++..+..+.++++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..+.+
T Consensus 45 ~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 122 (353)
T 2z80_A 45 SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKP 122 (353)
T ss_dssp SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTT
T ss_pred ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCC
Confidence 5566544 58999999999998666668999999999999999999888888999999999999999998666666899
Q ss_pred CCCCCeeecccccCCCCCc-hhccCCCCCcEEEccCCc-CCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCe
Q 006206 174 LTSLQQLYIDSSGVTGSIP-QEFANLKSLRILWASDNL-FTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLED 251 (657)
Q Consensus 174 l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 251 (657)
+++|++|++++|+++...+ ..+..+++|++|++++|. +....+..+..+++|++|++++|.+++..|..+..+++|++
T Consensus 123 l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 202 (353)
T 2z80_A 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH 202 (353)
T ss_dssp CTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCe
Confidence 9999999999999985433 478899999999999994 66566778999999999999999999888999999999999
Q ss_pred EEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCccccc---CCCCCcEEeccCCCCCC----CCchhccCCCCCcEE
Q 006206 252 LRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLG---TFAKLQLLDLSFNKLTG----QIPTSLQDLSTLQYL 324 (657)
Q Consensus 252 L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~---~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L 324 (657)
|++++|.+.......+..+++|++|+|++|.+++..+..+. ..+.++.++|+++.+++ .+|..+..+++|+.|
T Consensus 203 L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L 282 (353)
T 2z80_A 203 LILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLEL 282 (353)
T ss_dssp EEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEE
T ss_pred ecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEE
Confidence 99999988665656667789999999999999876555443 46789999999999876 377788999999999
Q ss_pred EccCCcCCCCCCccc--cCCCCceEecccccCCCCCC
Q 006206 325 YLGNNNLSGELPVNI--IAPNLIALDVSYNPLSGNLP 359 (657)
Q Consensus 325 ~L~~N~l~~~~p~~~--~~~~L~~LdLs~N~l~g~~p 359 (657)
+|++|+++ .+|... .+++|++|+|++|++++..|
T Consensus 283 ~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 283 EFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 99999999 677654 57999999999999998766
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=4.8e-29 Score=266.28 Aligned_cols=264 Identities=16% Similarity=0.103 Sum_probs=226.0
Q ss_pred cCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCe
Q 006206 100 FMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQ 179 (657)
Q Consensus 100 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 179 (657)
..+++|+.|++++|.++...+..+..+++|++|+|++|.+++..+..|.++++|++|+|++|.+.+..|..+.++++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 34689999999999998544455789999999999999999877789999999999999999999888888999999999
Q ss_pred eecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCC
Q 006206 180 LYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSA 259 (657)
Q Consensus 180 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~ 259 (657)
|+|++|.++...+..+..+++|++|++++|++.+..+..+..+++|++|++++|.+++. .+..+++|+.|+++.|.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 99999999965555578999999999999999988888899999999999999999865 356789999999999876
Q ss_pred CCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcCCCCCCccc
Q 006206 260 EDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI 339 (657)
Q Consensus 260 ~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 339 (657)
.. +...++|++|++++|.+... |.. .+++|+.|++++|++++. ..+..+++|+.|+|++|.+++..|..+
T Consensus 199 ~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (390)
T 3o6n_A 199 ST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 268 (390)
T ss_dssp SE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence 54 34457899999999999854 433 358999999999999854 478999999999999999998777655
Q ss_pred -cCCCCceEecccccCCCCCCccccC-CCcE-EEeecCCcC
Q 006206 340 -IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSIN 377 (657)
Q Consensus 340 -~~~~L~~LdLs~N~l~g~~p~~~~~-~~l~-~~l~~n~~~ 377 (657)
.+++|++|+|++|++++. |..+.. +.|+ +++++|++.
T Consensus 269 ~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~ 308 (390)
T 3o6n_A 269 VKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL 308 (390)
T ss_dssp TTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCC
T ss_pred cccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcce
Confidence 479999999999999864 444444 5565 899999886
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=6e-29 Score=280.34 Aligned_cols=271 Identities=19% Similarity=0.187 Sum_probs=225.7
Q ss_pred CCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCee
Q 006206 101 MLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQL 180 (657)
Q Consensus 101 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 180 (657)
.+++++.|++++|.+....+..+..+++|++|+|++|.+++..|..|.++++|++|+|++|.+.+..|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 46899999999999986555668899999999999999998888899999999999999999999888889999999999
Q ss_pred ecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCC
Q 006206 181 YIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAE 260 (657)
Q Consensus 181 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~ 260 (657)
+|++|.+++..+..|..+++|++|+|++|.+.+..|..+..+++|++|++++|.+++.. +..+++|+.|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 99999999766666799999999999999999998999999999999999999998653 566889999999998775
Q ss_pred CCC-hhhh---------------hcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCCCCCcEE
Q 006206 261 DST-LDFL---------------ESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYL 324 (657)
Q Consensus 261 ~~~-~~~l---------------~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 324 (657)
... +..+ ...++|+.|+|++|.+++ +..+..+++|+.|+|++|.+++..|..|..+++|+.|
T Consensus 206 ~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 283 (597)
T 3oja_B 206 TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 283 (597)
T ss_dssp EEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred cccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEE
Confidence 431 1111 112457777777777775 3567888899999999999988888888899999999
Q ss_pred EccCCcCCCCCCccc-cCCCCceEecccccCCCCCCccccC-CCcE-EEeecCCcCC
Q 006206 325 YLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSINA 378 (657)
Q Consensus 325 ~L~~N~l~~~~p~~~-~~~~L~~LdLs~N~l~g~~p~~~~~-~~l~-~~l~~n~~~~ 378 (657)
+|++|.+++ +|... .+++|++|+|++|+++ .+|..+.. +.|+ +++++|++..
T Consensus 284 ~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 284 YISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT 338 (597)
T ss_dssp ECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred ECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC
Confidence 999999886 44333 4788999999999988 46656655 5565 8888888763
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=3.3e-28 Score=255.44 Aligned_cols=281 Identities=23% Similarity=0.320 Sum_probs=212.3
Q ss_pred CCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEE
Q 006206 78 SCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLS 157 (657)
Q Consensus 78 ~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 157 (657)
..++++|++.++.+.. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.++. +| .+.++++|++|+
T Consensus 43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELY 116 (347)
T ss_dssp HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEE
T ss_pred cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEE
Confidence 3467888888877753 34 37788888888888888874 443 8888888888888888874 33 588888888888
Q ss_pred eecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCC
Q 006206 158 FSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEG 237 (657)
Q Consensus 158 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 237 (657)
+++|.+.+. +. +..+++|++|++++|.....++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+
T Consensus 117 l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~ 191 (347)
T 4fmz_A 117 LNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED 191 (347)
T ss_dssp CTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC
T ss_pred CcCCcccCc-hh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc
Confidence 888888743 33 77888888888888866554443 7888888888888888875443 7778888888888888875
Q ss_pred CchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccC
Q 006206 238 PIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQD 317 (657)
Q Consensus 238 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 317 (657)
..+ +..+++|+.|++++|.+..... +..+++|++|+|++|.+++..+ +..+++|+.|++++|++++ + ..+..
T Consensus 192 ~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~ 263 (347)
T 4fmz_A 192 ISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKD 263 (347)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTT
T ss_pred ccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhc
Confidence 443 7778888888888887766543 7778888888888888875443 7788888888888888874 3 35778
Q ss_pred CCCCcEEEccCCcCCCCCCccccCCCCceEecccccCCCCCCccccC-CCcE-EEeecCCcCC
Q 006206 318 LSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSINA 378 (657)
Q Consensus 318 l~~L~~L~L~~N~l~~~~p~~~~~~~L~~LdLs~N~l~g~~p~~~~~-~~l~-~~l~~n~~~~ 378 (657)
+++|++|++++|++++ +|....+++|++|++++|++++..|..+.. +.++ +++++|++..
T Consensus 264 l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 264 LTKLKMLNVGSNQISD-ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp CTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred CCCcCEEEccCCccCC-ChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence 8888888888888875 454445788888888888888777766666 5554 7888887753
No 39
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.1e-28 Score=257.57 Aligned_cols=268 Identities=21% Similarity=0.227 Sum_probs=233.5
Q ss_pred CCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEE
Q 006206 78 SCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLS 157 (657)
Q Consensus 78 ~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 157 (657)
..+++.|+++++.+.+..|..+.++++|++|+|++|.+++..|..|+.+++|++|+|++|.++ .+|..+. ++|++|+
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELR 129 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEE
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEE
Confidence 357999999999998887888999999999999999999888999999999999999999998 6776655 8999999
Q ss_pred eecccCCCCCchhhcCCCCCCeeecccccCC--CCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCC
Q 006206 158 FSSNNFFGPLPKELGKLTSLQQLYIDSSGVT--GSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLL 235 (657)
Q Consensus 158 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l 235 (657)
+++|++....+..+.++++|++|++++|.++ +..+..+..+ +|++|++++|++++ +|..+. ++|++|++++|.+
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i 205 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKI 205 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCC
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcC
Confidence 9999999777778999999999999999996 3677788888 99999999999985 555443 7899999999999
Q ss_pred CCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhc
Q 006206 236 EGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSL 315 (657)
Q Consensus 236 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l 315 (657)
++..+..+..+++|+.|++++|.+....+..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|++++..+..|
T Consensus 206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHc
Confidence 9988899999999999999999999888888999999999999999999 788889999999999999999996666666
Q ss_pred cC------CCCCcEEEccCCcCC--CCCCccc-cCCCCceEeccccc
Q 006206 316 QD------LSTLQYLYLGNNNLS--GELPVNI-IAPNLIALDVSYNP 353 (657)
Q Consensus 316 ~~------l~~L~~L~L~~N~l~--~~~p~~~-~~~~L~~LdLs~N~ 353 (657)
.. .+.|+.|++++|.+. +..|..+ .+++|+.|++++|+
T Consensus 285 ~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 54 367999999999987 3444334 47999999999985
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=8.1e-28 Score=252.45 Aligned_cols=280 Identities=27% Similarity=0.369 Sum_probs=237.4
Q ss_pred CCCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEE
Q 006206 77 NSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISL 156 (657)
Q Consensus 77 ~~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 156 (657)
...++++|+++++.+.+. +. +..+++|++|++++|.++. ++ .+..+++|++|++++|.+++ ++. +.++++|++|
T Consensus 64 ~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L 137 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSL 137 (347)
T ss_dssp GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEE
T ss_pred hcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccC-chh-hccCCceeEE
Confidence 356899999999988754 44 9999999999999999985 44 69999999999999999985 444 8999999999
Q ss_pred EeecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCC
Q 006206 157 SFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLE 236 (657)
Q Consensus 157 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 236 (657)
++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.
T Consensus 138 ~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 138 NLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT 212 (347)
T ss_dssp ECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred ECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCC
Confidence 999997765555 48999999999999999986544 8899999999999999985443 888999999999999998
Q ss_pred CCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhcc
Q 006206 237 GPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQ 316 (657)
Q Consensus 237 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 316 (657)
+..+ +..+++|++|++++|.+..... +..+++|++|++++|.+++. ..+..+++|+.|++++|++++ ++ .+.
T Consensus 213 ~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~~~ 284 (347)
T 4fmz_A 213 DITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-IS-VLN 284 (347)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGG
T ss_pred CCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-Ch-hhc
Confidence 7655 8899999999999998877654 88999999999999999853 468899999999999999985 44 588
Q ss_pred CCCCCcEEEccCCcCCCCCCccc-cCCCCceEecccccCCCCCCccccC-CCcE-EEeecCCcC
Q 006206 317 DLSTLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSIN 377 (657)
Q Consensus 317 ~l~~L~~L~L~~N~l~~~~p~~~-~~~~L~~LdLs~N~l~g~~p~~~~~-~~l~-~~l~~n~~~ 377 (657)
.+++|+.|++++|.+++..|..+ .+++|++|+|++|++++..| +.. +.++ +++++|++.
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 99999999999999997776544 57999999999999998776 444 5554 888888764
No 41
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=1e-27 Score=262.15 Aligned_cols=279 Identities=29% Similarity=0.360 Sum_probs=218.3
Q ss_pred CCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEE
Q 006206 78 SCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLS 157 (657)
Q Consensus 78 ~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 157 (657)
..++++|+++++.+.+..+ +.++++|++|++++|.+.+..+ ++.+++|++|+|++|.+++. +. +.++++|++|+
T Consensus 67 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~ 140 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLE 140 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEE
T ss_pred hcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEE
Confidence 4578888888888765543 8888888888888888875444 88888888888888888754 33 77888888888
Q ss_pred eecccCCCCCc-------------------hhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchh
Q 006206 158 FSSNNFFGPLP-------------------KELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEF 218 (657)
Q Consensus 158 Ls~n~l~~~~p-------------------~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~ 218 (657)
+++|.+.+... ..+.++++|++|++++|.+... ..+..+++|++|++++|.+.+..+
T Consensus 141 l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-- 216 (466)
T 1o6v_A 141 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-- 216 (466)
T ss_dssp EEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred CCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--
Confidence 88887664211 1266778899999999998753 348889999999999999987655
Q ss_pred cCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCc
Q 006206 219 FGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQ 298 (657)
Q Consensus 219 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 298 (657)
+..+++|++|++++|.+++. ..+..+++|+.|++++|.+....+ +..+++|++|++++|.+++..+ +..+++|+
T Consensus 217 ~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 290 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALT 290 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCS
T ss_pred ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccC
Confidence 67789999999999988854 367888999999999988776543 7788899999999998886544 77888999
Q ss_pred EEeccCCCCCCCCchhccCCCCCcEEEccCCcCCCCCCccccCCCCceEecccccCCCCCCccccC-CCcE-EEeecCCc
Q 006206 299 LLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSI 376 (657)
Q Consensus 299 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~LdLs~N~l~g~~p~~~~~-~~l~-~~l~~n~~ 376 (657)
.|++++|++++..+ +..+++|+.|+|++|++++..| ...+++|++|++++|++++. + .+.. +.|+ +++.+|++
T Consensus 291 ~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 291 NLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDV-S-SLANLTNINWLSAGHNQI 365 (466)
T ss_dssp EEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCC
T ss_pred eEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCc-h-hhccCCCCCEEeCCCCcc
Confidence 99999999886444 7788899999999999887655 44678889999999988875 3 4544 5555 78888877
Q ss_pred C
Q 006206 377 N 377 (657)
Q Consensus 377 ~ 377 (657)
.
T Consensus 366 ~ 366 (466)
T 1o6v_A 366 S 366 (466)
T ss_dssp C
T ss_pred C
Confidence 5
No 42
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=5e-29 Score=278.36 Aligned_cols=190 Identities=21% Similarity=0.219 Sum_probs=159.1
Q ss_pred cCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcC
Q 006206 94 ELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGK 173 (657)
Q Consensus 94 ~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 173 (657)
.+|..+. ++|++|+|++|.+++..|..|..+++|++|+|++|++++..|..|.++++|++|+|++|.+.+..|..|++
T Consensus 19 ~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 96 (549)
T 2z81_A 19 SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP 96 (549)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTT
T ss_pred cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhcc
Confidence 5666553 78999999999999888889999999999999999999888899999999999999999999888888999
Q ss_pred CCCCCeeecccccCCC-CCchhccCCCCCcEEEccCCcCCCCCc-hhcCCCCcccEEEccCCCCCCCchhhccCCCCCCe
Q 006206 174 LTSLQQLYIDSSGVTG-SIPQEFANLKSLRILWASDNLFTGKIP-EFFGTLTELADLRLQGTLLEGPIPRSFRALNKLED 251 (657)
Q Consensus 174 l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 251 (657)
+++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.+| ..+..+++|++|++++|.+++..|..+..+++|++
T Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176 (549)
T ss_dssp CTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCce
Confidence 9999999999999986 467789999999999999999655555 68999999999999999999888888887777777
Q ss_pred EEcCCCCCCCCChhhhhcCCCCCEEEccCccccc
Q 006206 252 LRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSG 285 (657)
Q Consensus 252 L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~ 285 (657)
|+++.|.........+..+++|++|++++|++++
T Consensus 177 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 177 LTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp EEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred EecccCcccccchhhHhhcccccEEEccCCcccc
Confidence 7777665544333333455666666666665554
No 43
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=2.3e-27 Score=259.39 Aligned_cols=280 Identities=25% Similarity=0.331 Sum_probs=235.2
Q ss_pred CCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEE
Q 006206 78 SCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLS 157 (657)
Q Consensus 78 ~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 157 (657)
..+++.|++.++.+.. +| .+..+++|++|+|++|.+++.. . +..+++|++|++++|.+++..+ +.++++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDIT-P-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCch-h-hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 3478999999988754 55 4888999999999999998544 3 9999999999999999986544 99999999999
Q ss_pred eecccCCCCCchhhcCCCCCCeeecccccCCCCCc-------------------hhccCCCCCcEEEccCCcCCCCCchh
Q 006206 158 FSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIP-------------------QEFANLKSLRILWASDNLFTGKIPEF 218 (657)
Q Consensus 158 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-------------------~~l~~l~~L~~L~Ls~n~l~~~~~~~ 218 (657)
+++|.+.+. +. +.++++|++|++++|.+.+... ..+..+++|++|++++|.+.+. ..
T Consensus 119 L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~ 194 (466)
T 1o6v_A 119 LFNNQITDI-DP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SV 194 (466)
T ss_dssp CCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GG
T ss_pred CCCCCCCCC-hH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hh
Confidence 999999865 33 8899999999999998775211 1266788999999999998854 34
Q ss_pred cCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCc
Q 006206 219 FGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQ 298 (657)
Q Consensus 219 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 298 (657)
+..+++|++|++++|.+.+..+ +..+++|++|++++|.+... ..+..+++|++|++++|.+++..+ +..+++|+
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 268 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLT 268 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCS
T ss_pred hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCC
Confidence 7889999999999999997766 77899999999999988764 467889999999999999986655 88899999
Q ss_pred EEeccCCCCCCCCchhccCCCCCcEEEccCCcCCCCCCccccCCCCceEecccccCCCCCCccccC-CCcE-EEeecCCc
Q 006206 299 LLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSI 376 (657)
Q Consensus 299 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~LdLs~N~l~g~~p~~~~~-~~l~-~~l~~n~~ 376 (657)
.|++++|++++..+ +..+++|+.|++++|++++..| ...+++|++|+|++|++++..| +.. +.|+ +++.+|.+
T Consensus 269 ~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l 343 (466)
T 1o6v_A 269 ELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 343 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCC
T ss_pred EEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCcc
Confidence 99999999996544 8899999999999999996544 4468999999999999998776 334 5555 89999988
Q ss_pred CC
Q 006206 377 NA 378 (657)
Q Consensus 377 ~~ 378 (657)
..
T Consensus 344 ~~ 345 (466)
T 1o6v_A 344 SD 345 (466)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=3.9e-28 Score=252.66 Aligned_cols=235 Identities=22% Similarity=0.270 Sum_probs=187.1
Q ss_pred CCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCee
Q 006206 101 MLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQL 180 (657)
Q Consensus 101 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 180 (657)
..++++.|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..++++++|++|+|++|.+. .+|..+.++++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 3578999999999998 78888989999999999999999 88999999999999999999998 778889999999999
Q ss_pred ecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCC
Q 006206 181 YIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAE 260 (657)
Q Consensus 181 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~ 260 (657)
+|++|++.+.+|..+... ..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.
T Consensus 156 ~L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred ECCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 999998888888776540 00112233444444444444444 34444444555555555555444
Q ss_pred CCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcCCCCCCccc-
Q 006206 261 DSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI- 339 (657)
Q Consensus 261 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~- 339 (657)
.. +..+..+++|++|+|++|.+.+.+|..+..+++|+.|+|++|++.+.+|..+..+++|+.|+|++|++.+.+|..+
T Consensus 220 ~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 220 AL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp CC-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred cC-chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 32 2246667788888899999998999999999999999999999999999999999999999999999999999776
Q ss_pred cCCCCceEecccccCC
Q 006206 340 IAPNLIALDVSYNPLS 355 (657)
Q Consensus 340 ~~~~L~~LdLs~N~l~ 355 (657)
.+++|+.+++..|.+.
T Consensus 299 ~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 299 QLPANCIILVPPHLQA 314 (328)
T ss_dssp GSCTTCEEECCGGGSC
T ss_pred hccCceEEeCCHHHHH
Confidence 5899999999988765
No 45
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=2.4e-27 Score=257.76 Aligned_cols=275 Identities=19% Similarity=0.139 Sum_probs=225.4
Q ss_pred CCCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEE
Q 006206 77 NSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISL 156 (657)
Q Consensus 77 ~~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 156 (657)
...++++|+++++.+.+. | .+..+++|++|++++|.+++ +| ++.+++|++|++++|.+++. | ++++++|++|
T Consensus 40 ~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L 111 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYL 111 (457)
T ss_dssp HHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEE
T ss_pred HcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEE
Confidence 345799999999999864 5 69999999999999999986 44 88999999999999999964 4 8899999999
Q ss_pred EeecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCC
Q 006206 157 SFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLE 236 (657)
Q Consensus 157 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 236 (657)
++++|++++. | ++.+++|++|++++|++++. + +..+++|++|++++|+..+.+ .+..+++|++|++++|.++
T Consensus 112 ~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 112 NCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp ECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc
Confidence 9999999864 4 88999999999999999974 3 788999999999999766666 4788999999999999998
Q ss_pred CCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhcc
Q 006206 237 GPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQ 316 (657)
Q Consensus 237 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 316 (657)
+ +| +..+++|+.|++++|.+... .+..+++|++|+|++|++++ +| +..+++|+.|++++|++++..+..+.
T Consensus 184 ~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~ 254 (457)
T 3bz5_A 184 E-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLS 254 (457)
T ss_dssp C-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCT
T ss_pred e-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCC
Confidence 7 44 88899999999999988775 37788999999999999997 66 78899999999999999976544444
Q ss_pred CCC-------CCcEEEccCCcCCCCCCccccCCCCceEecccccCCCCCCcccc--------C-CCcE-EEeecCCcC
Q 006206 317 DLS-------TLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRNFA--------K-GGLS-MNVIGSSIN 377 (657)
Q Consensus 317 ~l~-------~L~~L~L~~N~l~~~~p~~~~~~~L~~LdLs~N~l~g~~p~~~~--------~-~~l~-~~l~~n~~~ 377 (657)
.+. +|+.|++++|.+.+.+| ...+++|+.|+|++|++.+.+|.... . +.++ +++++|++.
T Consensus 255 ~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~ 331 (457)
T 3bz5_A 255 KLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELT 331 (457)
T ss_dssp TCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCS
T ss_pred CCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccc
Confidence 443 45566666666666666 34578999999999998887774321 1 3343 677777775
No 46
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.8e-27 Score=258.26 Aligned_cols=245 Identities=20% Similarity=0.189 Sum_probs=173.2
Q ss_pred eEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecc
Q 006206 82 THLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSN 161 (657)
Q Consensus 82 ~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n 161 (657)
..++..+.++. .+|..+. ++++.|+|++|.+++..+..|.++++|++|+|++|.++...+..|.++++|++|+|++|
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 34555555553 5666544 67899999999998777788899999999999999988777788888999999999999
Q ss_pred cCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCc-hhcCCCCcccEEEccCCCCCCCch
Q 006206 162 NFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIP-EFFGTLTELADLRLQGTLLEGPIP 240 (657)
Q Consensus 162 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~ 240 (657)
+++...+..|..+++|++|+|++|.+....+..+..+++|++|++++|...+.++ ..+..+++|++|++++|.++. +|
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~ 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc
Confidence 8886666678888889999998888886666678888888888888854433333 456777777777777776662 22
Q ss_pred hhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCCCC
Q 006206 241 RSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLST 320 (657)
Q Consensus 241 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 320 (657)
.+ ..+++|++|+|++|.+++..|..+..+++|+.|+|++|++++..+..|..+++
T Consensus 202 -~~------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 256 (440)
T 3zyj_A 202 -NL------------------------TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256 (440)
T ss_dssp -CC------------------------TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTT
T ss_pred -cc------------------------CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCC
Confidence 13 34455666666666666555666666666666666666666555666666666
Q ss_pred CcEEEccCCcCCCCCCccc-cCCCCceEecccccCC
Q 006206 321 LQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLS 355 (657)
Q Consensus 321 L~~L~L~~N~l~~~~p~~~-~~~~L~~LdLs~N~l~ 355 (657)
|+.|+|++|++++..+..+ .+++|+.|+|++|++.
T Consensus 257 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 6666666666664333222 3566666777766654
No 47
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.9e-28 Score=252.60 Aligned_cols=247 Identities=21% Similarity=0.245 Sum_probs=160.5
Q ss_pred EEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCC--CCCccccCCCCCcEEEeec
Q 006206 83 HLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTG--RVPTELGNLTKLISLSFSS 160 (657)
Q Consensus 83 ~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~ 160 (657)
.++.+++++. .+|..+. ++|++|+|++|.++...+..|..+++|++|+|++|.++. ..|..+..+++|++|+|++
T Consensus 11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 4555555553 4554332 678899999988884444457888889999999888873 2356667788888888888
Q ss_pred ccCCCCCchhhcCCCCCCeeecccccCCCCCc-hhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCC-C
Q 006206 161 NNFFGPLPKELGKLTSLQQLYIDSSGVTGSIP-QEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEG-P 238 (657)
Q Consensus 161 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~ 238 (657)
|.+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .
T Consensus 88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 8876 456667788888888888888876544 567788888888888888877777777778888888888887765 4
Q ss_pred chhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCC
Q 006206 239 IPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDL 318 (657)
Q Consensus 239 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 318 (657)
+|..+..+++|+.|++++|.+....+..+..+++|++|+|++|.+++..+..+..+++|+.|+|++|++++..|..+..+
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence 55556666555555555555444444444445555555555555544444444444555555555555544444444444
Q ss_pred C-CCcEEEccCCcCCC
Q 006206 319 S-TLQYLYLGNNNLSG 333 (657)
Q Consensus 319 ~-~L~~L~L~~N~l~~ 333 (657)
+ +|++|+|++|.+++
T Consensus 247 ~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 247 PSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CTTCCEEECTTCCEEC
T ss_pred hccCCEEEccCCCeec
Confidence 2 44455555444443
No 48
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2.7e-27 Score=257.78 Aligned_cols=245 Identities=19% Similarity=0.166 Sum_probs=175.1
Q ss_pred EEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeeccc
Q 006206 83 HLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNN 162 (657)
Q Consensus 83 ~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 162 (657)
.++..+.++. .+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.
T Consensus 58 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 58 KVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 4455555543 4565443 688999999999987778889999999999999999988777888899999999999998
Q ss_pred CCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCc-hhcCCCCcccEEEccCCCCCCCchh
Q 006206 163 FFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIP-EFFGTLTELADLRLQGTLLEGPIPR 241 (657)
Q Consensus 163 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~ 241 (657)
++...+..|..+++|++|+|++|.+....+..+..+++|++|++++|...+.++ ..+..+++|++|++++|.+++. |
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~- 212 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P- 212 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-
Confidence 887766778888899999999888886666678888888888888854433333 3566777777777777766532 2
Q ss_pred hccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCCCCC
Q 006206 242 SFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTL 321 (657)
Q Consensus 242 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 321 (657)
. +..+++|++|+|++|.+++..|..+..+++|+.|+|++|++++..|..|..+++|
T Consensus 213 ~------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 268 (452)
T 3zyi_A 213 N------------------------LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL 268 (452)
T ss_dssp C------------------------CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred c------------------------ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCC
Confidence 2 3344566666666666666666666666777777777777766666666667777
Q ss_pred cEEEccCCcCCCCCCccc-cCCCCceEecccccCCC
Q 006206 322 QYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSG 356 (657)
Q Consensus 322 ~~L~L~~N~l~~~~p~~~-~~~~L~~LdLs~N~l~g 356 (657)
+.|+|++|++++..+..+ .+++|++|+|++|++..
T Consensus 269 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 269 VELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp CEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred CEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 777777777764333222 35667777777776653
No 49
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.4e-27 Score=243.52 Aligned_cols=255 Identities=22% Similarity=0.233 Sum_probs=183.5
Q ss_pred eEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecc
Q 006206 82 THLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSN 161 (657)
Q Consensus 82 ~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n 161 (657)
+.++.+++++. .+|..+ .++|++|++++|.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 56677666664 445433 467888888888888666677888888888888888888777778888888888888888
Q ss_pred c-CCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCch
Q 006206 162 N-FFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIP 240 (657)
Q Consensus 162 ~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 240 (657)
. +....|..+..+++|++|++++|.+++..|..+..+++|++|++++|++.+..+..+..+++|++|++++|.+++..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~- 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP- 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC-
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC-
Confidence 6 66555677777888888888888877766777777777777777777777655555666666666666666655332
Q ss_pred hhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCCCC
Q 006206 241 RSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLST 320 (657)
Q Consensus 241 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 320 (657)
...+..+++|++|+|++|.+++..|..+..+++|+.|++++|++++..+..+..+++
T Consensus 170 -----------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 226 (285)
T 1ozn_A 170 -----------------------ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226 (285)
T ss_dssp -----------------------TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred -----------------------HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcc
Confidence 233445566777777777777777778888888888888888888766667888888
Q ss_pred CcEEEccCCcCCCCCCccccCCCCceEecccccCCCCCCcccc
Q 006206 321 LQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRNFA 363 (657)
Q Consensus 321 L~~L~L~~N~l~~~~p~~~~~~~L~~LdLs~N~l~g~~p~~~~ 363 (657)
|+.|+|++|.+....+.......++.+..+.+.+....|+.+.
T Consensus 227 L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 227 LQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp CCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGGT
T ss_pred cCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchHhC
Confidence 8888888888876544322234455566677777777776543
No 50
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=8.9e-27 Score=253.31 Aligned_cols=273 Identities=16% Similarity=0.118 Sum_probs=230.3
Q ss_pred CCCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEE
Q 006206 77 NSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISL 156 (657)
Q Consensus 77 ~~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 156 (657)
...++++|++++|.+.+. | +..+++|++|++++|.+++. + ++.+++|++|++++|++++ +| ++++++|++|
T Consensus 62 ~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L 132 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYL 132 (457)
T ss_dssp GCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEE
T ss_pred ccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEE
Confidence 456899999999999874 4 89999999999999999864 4 8999999999999999996 44 8999999999
Q ss_pred EeecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCC
Q 006206 157 SFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLE 236 (657)
Q Consensus 157 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 236 (657)
++++|++++. + ++.+++|++|++++|+..+.+ .+..+++|++|++++|++++ +| +..+++|++|++++|.++
T Consensus 133 ~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 133 NCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp ECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCS
T ss_pred ECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCC
Confidence 9999999874 3 889999999999999776666 47889999999999999997 44 888999999999999999
Q ss_pred CCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCC-------CCcEEeccCCCCCC
Q 006206 237 GPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFA-------KLQLLDLSFNKLTG 309 (657)
Q Consensus 237 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~-------~L~~L~Ls~n~l~~ 309 (657)
+. .+..+++|+.|++++|.+...+ +..+++|++|++++|.+++..+..+..++ +|+.|++++|.+.+
T Consensus 205 ~~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~ 278 (457)
T 3bz5_A 205 KL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLI 278 (457)
T ss_dssp CC---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCC
T ss_pred ee---ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCC
Confidence 75 4889999999999999988753 78899999999999999976655554443 55667777777666
Q ss_pred CCchhccCCCCCcEEEccCCcCCCCCCccc---------cCCCCceEecccccCCCCCCccccC-CCcE-EEeecCCcC
Q 006206 310 QIPTSLQDLSTLQYLYLGNNNLSGELPVNI---------IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSIN 377 (657)
Q Consensus 310 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~---------~~~~L~~LdLs~N~l~g~~p~~~~~-~~l~-~~l~~n~~~ 377 (657)
.+| +..+++|+.|++++|.+.+.+|... .+++|++|++++|+|++. + +.. +.|+ +++++|.+.
T Consensus 279 ~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 279 YFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp EEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCC
T ss_pred ccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCC
Confidence 676 5688999999999999888777422 247899999999999984 4 544 5555 899999886
No 51
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.1e-27 Score=244.20 Aligned_cols=208 Identities=21% Similarity=0.203 Sum_probs=176.7
Q ss_pred CCCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCc-CCCCCCccccCCCCCcE
Q 006206 77 NSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINN-FTGRVPTELGNLTKLIS 155 (657)
Q Consensus 77 ~~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~ 155 (657)
...++++|+++++.+.+..+..+..+++|++|+|++|.+++..|..|..+++|++|+|++|. +....|..|.++++|++
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 45689999999999988777889999999999999999998778999999999999999997 77666889999999999
Q ss_pred EEeecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCC
Q 006206 156 LSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLL 235 (657)
Q Consensus 156 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l 235 (657)
|++++|.+.+..|..+.++++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence 99999999988888899999999999999999987777799999999999999999977777789999999999999999
Q ss_pred CCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccc
Q 006206 236 EGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVS 284 (657)
Q Consensus 236 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~ 284 (657)
++..|..+..+++|+.|++++|.+....+..+..+++|++|+|++|.+.
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 8777777777766666666666555544444555555555555555544
No 52
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=8.3e-29 Score=256.09 Aligned_cols=249 Identities=20% Similarity=0.195 Sum_probs=193.1
Q ss_pred ccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcC-CCCCCcccc-------CCCCCcEEEeecccCCCCCchh
Q 006206 99 LFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNF-TGRVPTELG-------NLTKLISLSFSSNNFFGPLPKE 170 (657)
Q Consensus 99 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l-~~~~p~~~~-------~l~~L~~L~Ls~n~l~~~~p~~ 170 (657)
+...++|+.|++++|.+ .+|..+... |+.|+|++|.+ ...+|..+. ++++|++|+|++|.+++.+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 34456778888888887 667665544 78888888887 345666555 6888888888888888777776
Q ss_pred h--cCCCCCCeeecccccCCCCCchhccCC-----CCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCC--chh
Q 006206 171 L--GKLTSLQQLYIDSSGVTGSIPQEFANL-----KSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGP--IPR 241 (657)
Q Consensus 171 l--~~l~~L~~L~Ls~n~l~~~~p~~l~~l-----~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~ 241 (657)
+ ..+++|++|+|++|++++. |..+..+ ++|++|++++|++.+..+..+..+++|++|++++|.+.+. .+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 5 7788888888888888866 7666666 7888888888888877778888888888888888887765 344
Q ss_pred hc--cCCCCCCeEEcCCCCCCCC---ChhhhhcCCCCCEEEccCcccccCCc-ccccCCCCCcEEeccCCCCCCCCchhc
Q 006206 242 SF--RALNKLEDLRIGDLSAEDS---TLDFLESQKSLSILSLRNCRVSGKIP-DQLGTFAKLQLLDLSFNKLTGQIPTSL 315 (657)
Q Consensus 242 ~l--~~l~~L~~L~l~~~~~~~~---~~~~l~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l 315 (657)
.+ ..+++|++|++++|.+... ....+..+++|++|+|++|.+++..| ..+..+++|++|+|++|+++ .+|..+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence 44 7788888888888877643 22344677899999999999987775 45566889999999999998 778766
Q ss_pred cCCCCCcEEEccCCcCCCCCCccccCCCCceEecccccCCC
Q 006206 316 QDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSG 356 (657)
Q Consensus 316 ~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~LdLs~N~l~g 356 (657)
. ++|++|+|++|++++. |....+++|++|+|++|++++
T Consensus 273 ~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp C--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTTC
T ss_pred c--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCCC
Confidence 5 7899999999999865 654467899999999999885
No 53
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=1.6e-26 Score=262.38 Aligned_cols=148 Identities=23% Similarity=0.283 Sum_probs=129.5
Q ss_pred cCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCC
Q 006206 88 ALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPL 167 (657)
Q Consensus 88 ~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~ 167 (657)
+.+++ .+|..+. +++++|||++|.|++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..
T Consensus 40 ~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~ 116 (635)
T 4g8a_A 40 ELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 116 (635)
T ss_dssp TSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC
Confidence 33443 4565442 47999999999999777789999999999999999999877888999999999999999999777
Q ss_pred chhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCC-CCchhcCCCCcccEEEccCCCCCCC
Q 006206 168 PKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG-KIPEFFGTLTELADLRLQGTLLEGP 238 (657)
Q Consensus 168 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~ 238 (657)
+..|.++++|++|+|++|++++..+..|+++++|++|++++|.+.+ .+|..+..+++|++|++++|.+++.
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred HHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 7789999999999999999998777789999999999999999975 4678889999999999999987643
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=9.7e-27 Score=253.38 Aligned_cols=246 Identities=24% Similarity=0.242 Sum_probs=198.5
Q ss_pred CEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeecccc
Q 006206 106 MDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSS 185 (657)
Q Consensus 106 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 185 (657)
..++.++..++ .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|.+.+..+..|.++++|++|+|++|
T Consensus 57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 45777777776 5676554 68999999999999888888999999999999999998887788888999999999999
Q ss_pred cCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCChh
Q 006206 186 GVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLD 265 (657)
Q Consensus 186 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 265 (657)
.++...+..+..+++|++|+|++|++....+..+..+++|++|++++|+..+.++ ..
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~-----------------------~~ 190 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS-----------------------EG 190 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC-----------------------TT
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC-----------------------hh
Confidence 9887666778888888888888888876555667777777777777643332222 23
Q ss_pred hhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcCCCCCCccc-cCCCC
Q 006206 266 FLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI-IAPNL 344 (657)
Q Consensus 266 ~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~-~~~~L 344 (657)
.+..+++|++|+|++|++++ +| .+..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..+ .+++|
T Consensus 191 ~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 268 (452)
T 3zyi_A 191 AFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL 268 (452)
T ss_dssp TTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCC
Confidence 45566778888888888874 44 47889999999999999998889999999999999999999997777555 47999
Q ss_pred ceEecccccCCCCCCccccC-CCcE-EEeecCCcCCC
Q 006206 345 IALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSINAN 379 (657)
Q Consensus 345 ~~LdLs~N~l~g~~p~~~~~-~~l~-~~l~~n~~~~~ 379 (657)
++|+|++|+|++..+..+.. +.|+ +++.+|++.++
T Consensus 269 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 269 VELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp CEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred CEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 99999999999776666655 5665 89999999864
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=5.2e-28 Score=249.33 Aligned_cols=261 Identities=21% Similarity=0.220 Sum_probs=221.4
Q ss_pred CCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCC--CchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcE
Q 006206 78 SCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGS--IPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLIS 155 (657)
Q Consensus 78 ~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 155 (657)
..++++|+++++.+....+..+.++++|++|+|++|.++.. .+..+..+++|++|+|++|.+. .+|..+.++++|++
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH 105 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCE
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCE
Confidence 45899999999999754444579999999999999999732 3677788999999999999998 57888999999999
Q ss_pred EEeecccCCCCCc-hhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCC-CCchhcCCCCcccEEEccCC
Q 006206 156 LSFSSNNFFGPLP-KELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG-KIPEFFGTLTELADLRLQGT 233 (657)
Q Consensus 156 L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~l~~n 233 (657)
|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 9999999986655 578999999999999999998888999999999999999999986 57888999999999999999
Q ss_pred CCCCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCC-CCcEEeccCCCCCCCCc
Q 006206 234 LLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFA-KLQLLDLSFNKLTGQIP 312 (657)
Q Consensus 234 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p 312 (657)
.+++..|..+..+++|+.|++++|.+.......+..+++|++|+|++|.+++..|..+..++ +|+.|+|++|.+++..+
T Consensus 186 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 99988899999999999999999999888777889999999999999999999999998885 99999999999986532
Q ss_pred h--hccCCCCCcEEEccCCcCCCCCCccc
Q 006206 313 T--SLQDLSTLQYLYLGNNNLSGELPVNI 339 (657)
Q Consensus 313 ~--~l~~l~~L~~L~L~~N~l~~~~p~~~ 339 (657)
. ....+..++.+.+..+.+....|...
T Consensus 266 ~~~~~~~l~~~~~~~~~~~~~~C~~p~~~ 294 (306)
T 2z66_A 266 HQSFLQWIKDQRQLLVEVERMECATPSDK 294 (306)
T ss_dssp GHHHHHHHHHTGGGBSCGGGCBEEESGGG
T ss_pred hHHHHHHHHhhhhhhccccccccCCchhh
Confidence 1 11222333334445555555555433
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.2e-27 Score=251.75 Aligned_cols=258 Identities=19% Similarity=0.203 Sum_probs=222.2
Q ss_pred CCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEE
Q 006206 78 SCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLS 157 (657)
Q Consensus 78 ~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 157 (657)
..++++|+++++++.+..+..+.++++|++|++++|.+++..|..|.++++|++|+|++|.+++..+..|.++++|++|+
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 35899999999999877676899999999999999999987788899999999999999999965555589999999999
Q ss_pred eecccCCCCCc-hhhcCCCCCCeeeccccc-CCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCC
Q 006206 158 FSSNNFFGPLP-KELGKLTSLQQLYIDSSG-VTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLL 235 (657)
Q Consensus 158 Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l 235 (657)
+++|++....+ ..+..+++|++|++++|+ +....+..+..+++|++|++++|++.+..|..+..+++|++|++++|.+
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 99999985444 478899999999999995 6666677899999999999999999988899999999999999999999
Q ss_pred CCCchhhccCCCCCCeEEcCCCCCCCCChhh---hhcCCCCCEEEccCccccc----CCcccccCCCCCcEEeccCCCCC
Q 006206 236 EGPIPRSFRALNKLEDLRIGDLSAEDSTLDF---LESQKSLSILSLRNCRVSG----KIPDQLGTFAKLQLLDLSFNKLT 308 (657)
Q Consensus 236 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---l~~~~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~ 308 (657)
....+..+..+++|+.|++++|.+....... ......++.++|+++.+.+ .+|..+..+++|+.|+|++|+++
T Consensus 211 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK 290 (353)
T ss_dssp TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence 7544445567899999999999887764333 3346778999999998876 47788899999999999999999
Q ss_pred CCCchh-ccCCCCCcEEEccCCcCCCCCC
Q 006206 309 GQIPTS-LQDLSTLQYLYLGNNNLSGELP 336 (657)
Q Consensus 309 ~~~p~~-l~~l~~L~~L~L~~N~l~~~~p 336 (657)
.+|.. +..+++|++|+|++|++++..|
T Consensus 291 -~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 291 -SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp -CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred -ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 56665 5899999999999999987655
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.4e-26 Score=251.14 Aligned_cols=247 Identities=23% Similarity=0.246 Sum_probs=199.0
Q ss_pred CCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeeccc
Q 006206 105 LMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDS 184 (657)
Q Consensus 105 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 184 (657)
.+.++.++..++ .+|..+. ++|+.|+|++|++++..+..|.++++|++|+|++|.+....+..|.++++|++|+|++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 346788888887 6777554 6899999999999987788899999999999999999877778888899999999999
Q ss_pred ccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCCh
Q 006206 185 SGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTL 264 (657)
Q Consensus 185 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 264 (657)
|+++...+..+..+++|++|+|++|++....+..+..+++|++|++++|+..+.++ .
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~-----------------------~ 178 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS-----------------------E 178 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC-----------------------T
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC-----------------------c
Confidence 98887666678888888888888888876666667777777777777644332222 2
Q ss_pred hhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcCCCCCCccc-cCCC
Q 006206 265 DFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI-IAPN 343 (657)
Q Consensus 265 ~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~-~~~~ 343 (657)
..+.++++|++|+|++|.++ .+|. +..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..+ .+++
T Consensus 179 ~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 256 (440)
T 3zyj_A 179 GAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256 (440)
T ss_dssp TTTTTCSSCCEEECTTSCCS-SCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTT
T ss_pred chhhcccccCeecCCCCcCc-cccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCC
Confidence 34555677777888888877 4553 7889999999999999998889999999999999999999997766555 4799
Q ss_pred CceEecccccCCCCCCccccC-CCcE-EEeecCCcCCC
Q 006206 344 LIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSINAN 379 (657)
Q Consensus 344 L~~LdLs~N~l~g~~p~~~~~-~~l~-~~l~~n~~~~~ 379 (657)
|++|||++|+|++..+..+.. ..|+ +++.+|++.++
T Consensus 257 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp CCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred CCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 999999999999777766665 6665 89999999864
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=2.3e-28 Score=252.80 Aligned_cols=245 Identities=22% Similarity=0.221 Sum_probs=211.0
Q ss_pred CceeEEEEecCCCCccCChhccCCCCCCEEEccCCCC-CCCCchhcC-------CCCCCCeeEcccCcCCCCCCccc--c
Q 006206 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVL-NGSIPAEIG-------QLSNMQYLSLGINNFTGRVPTEL--G 148 (657)
Q Consensus 79 ~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l-~~~~p~~l~-------~l~~L~~L~Ls~n~l~~~~p~~~--~ 148 (657)
.+++.|+++++.+ .+|..+... |+.|+|++|.+ ...+|..+. .+++|++|+|++|++++.+|..+ .
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 3567777888888 778877655 89999999998 446777666 79999999999999999999886 8
Q ss_pred CCCCCcEEEeecccCCCCCchhhcCC-----CCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCC--Cchhc--
Q 006206 149 NLTKLISLSFSSNNFFGPLPKELGKL-----TSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGK--IPEFF-- 219 (657)
Q Consensus 149 ~l~~L~~L~Ls~n~l~~~~p~~l~~l-----~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~~~~l-- 219 (657)
.+++|++|+|++|.+++. |..+..+ ++|++|+|++|++.+..|..+..+++|++|++++|++.+. .+..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 999999999999999977 7777776 9999999999999988889999999999999999998765 33444
Q ss_pred CCCCcccEEEccCCCCCC--Cch-hhccCCCCCCeEEcCCCCCCCCC-hhhhhcCCCCCEEEccCcccccCCcccccCCC
Q 006206 220 GTLTELADLRLQGTLLEG--PIP-RSFRALNKLEDLRIGDLSAEDST-LDFLESQKSLSILSLRNCRVSGKIPDQLGTFA 295 (657)
Q Consensus 220 ~~l~~L~~L~l~~n~l~~--~~~-~~l~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~ 295 (657)
..+++|++|++++|.+++ .++ ..+..+++|+.|++++|.+.... ...+..+++|++|+|++|.++ .+|..+. +
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~ 274 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--A 274 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--S
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--C
Confidence 889999999999999984 223 34568899999999999988765 355667899999999999999 7888776 8
Q ss_pred CCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcCCC
Q 006206 296 KLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSG 333 (657)
Q Consensus 296 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 333 (657)
+|++|+|++|++++. |. +..+++|++|+|++|++++
T Consensus 275 ~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 275 KLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 999999999999965 66 8999999999999999985
No 59
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*
Probab=99.94 E-value=2.7e-27 Score=221.21 Aligned_cols=149 Identities=24% Similarity=0.377 Sum_probs=112.4
Q ss_pred ccccccCCcccccCCCccccCCCCCC--CceeEEeecCCceEeeecccccCCCCCCcceeeeccccccCCChhhhhhccc
Q 006206 407 SFSIKCGGTQIASASGIEFDDDSKTL--EAASFYTSSGNRWAVSNTGNFISNPNGPLYIAQTDSQITGTLDSELYKTARI 484 (657)
Q Consensus 407 ~~~inCgg~~~~~~~~~~~~~d~~~~--g~~~~~~s~~~~w~~s~~g~~~~~~~~~~~~~~~~~~~~~~~p~~ly~t~r~ 484 (657)
.+++||||+..++..+..|++|.... |.+.. + + .+.. ....++.|+++|+|||+
T Consensus 7 ~~~INcGg~~~~d~~gr~w~~D~~~~~~g~~~~-------~-----~--------~~~~----~~~~~~~~~~lY~TaR~ 62 (174)
T 2jwp_A 7 IWAVNAGGESHVDVHGIHYRKDPLEGRVGRASD-------Y-----G--------MKLP----ILRSNPEDQVLYQTERY 62 (174)
T ss_dssp EEEEEETSSSEEETTTEEECSSCSSTTCCCCCC-------C-----C--------TTSC----CSSSCHHHHHTTTCCCC
T ss_pred EEEEECCCCCccCCCCCEEcCCcCcccCCcccc-------c-----c--------cceE----ecccCCCCchhhhhhcc
Confidence 47899999987655678898875311 11100 0 0 0000 01123568899999999
Q ss_pred cCCccccccCCCC-CceEEEEEeeeeeeecCCcCcccccceEEEEEECCEEecccCchhhhcCCCCceEEEEEEEEeeC-
Q 006206 485 SPSSLRYYGLGLE-NGKYRIDLHFAEITMEDSLSWKGLGRRVFDVYIQGERVLRDLNIKKEAGGSKRALVKTFEANVTN- 562 (657)
Q Consensus 485 ~~~~l~~~~~~v~-~g~y~v~lhF~e~~~~~~~~~~~~~~r~F~V~i~~~~~~~~~di~~~~~~~~~~~~~~~~v~v~~- 562 (657)
++.+++ |.|++. +|+|+|||||||+. +.+.++|+|||||||+++++||||.+++|+ .+|++|+|.++|++
T Consensus 63 ~~~~~t-Y~f~v~~~G~Y~VrLhF~ei~------~~~~~~rvFdV~ing~~~l~~fdi~~~ag~-~~~~~~~~~~~v~~~ 134 (174)
T 2jwp_A 63 NEDSFG-YDIPIKEEGEYVLVLKFAEVY------FAQSQQKVFDVRVNGHTVVKDLDIFDRVGH-STAHDEIIPISIKKG 134 (174)
T ss_dssp CCSCEE-EEEECCSCEEEEEEEEEECCS------CCCSSSSCEEEEETTEEEEEEECHHHHHSS-SSCEEEEEEEEEETT
T ss_pred CCCCeE-EEEEeCCCeEEEEEEEEeccc------cCCCCCeEeEEEECCEEeecCcCHHHhhCC-CeeEEEEEEEEEecC
Confidence 999999 889997 58999999999998 556899999999999999999999999986 78999999998644
Q ss_pred ------------CeEEEEEEeccCcCccccCCcccCceEeeEEEEec
Q 006206 563 ------------TIIEIHFFWAGKGTCCIPFQGTYGPLVSAIHASQV 597 (657)
Q Consensus 563 ------------~~l~i~~~~~~~g~~~~~~~~~~~~~~n~iei~~~ 597 (657)
|+|+|+|. |. ..++|+||||||+|-
T Consensus 135 ~l~i~~~~~~~~g~L~I~f~---------p~-~~~~a~inaIEI~~~ 171 (174)
T 2jwp_A 135 KLSVQGEVSTFTGKLSVEFV---------KG-YYDNPKVCALFIMKG 171 (174)
T ss_dssp EEEETTEEEECCSEEEEEEE---------CS-SSCSSSEEEEEEESS
T ss_pred ceeeeeeecccCCeEEEEEe---------cc-CCCCcEEEEEEEEeC
Confidence 45666662 11 145799999999984
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=6.2e-28 Score=250.07 Aligned_cols=266 Identities=17% Similarity=0.117 Sum_probs=202.1
Q ss_pred ceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEee
Q 006206 80 HITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 159 (657)
Q Consensus 80 ~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 159 (657)
+++.++++.+++...+...+..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..+ +..+++|++|+|+
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 35555666666654445556667899999999999998778899999999999999999986544 8899999999999
Q ss_pred cccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCc
Q 006206 160 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPI 239 (657)
Q Consensus 160 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 239 (657)
+|.+++. ...++|++|++++|.+++..+. .+++|++|++++|++++..+..+..+++|++|++++|.+++..
T Consensus 89 ~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQEL-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEEE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCccccc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 9988743 2348999999999999865443 3678999999999998877778888899999999999998777
Q ss_pred hhhc-cCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCC
Q 006206 240 PRSF-RALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDL 318 (657)
Q Consensus 240 ~~~l-~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 318 (657)
+..+ ..+++|++|++++|.+... .....+++|++|+|++|.+++ +|..+..+++|+.|+|++|+++ .+|..+..+
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l 236 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred HHHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcC
Confidence 6666 4678888888888877654 222346778888888888874 4444777788888888888887 567777777
Q ss_pred CCCcEEEccCCcCC-CCCCccc-cCCCCceEecccc-cCCCCCC
Q 006206 319 STLQYLYLGNNNLS-GELPVNI-IAPNLIALDVSYN-PLSGNLP 359 (657)
Q Consensus 319 ~~L~~L~L~~N~l~-~~~p~~~-~~~~L~~LdLs~N-~l~g~~p 359 (657)
++|+.|++++|.++ +.+|..+ .+++|+.|++++| .++|..|
T Consensus 237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 88888888888877 4444332 3567777777744 3666555
No 61
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=3.6e-25 Score=240.47 Aligned_cols=158 Identities=22% Similarity=0.340 Sum_probs=70.5
Q ss_pred ceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEee
Q 006206 80 HITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 159 (657)
Q Consensus 80 ~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 159 (657)
+++.|+++++.+.+ +|.. +++|++|++++|.+++ +|.. .++|++|++++|++++ +| .|+++++|++|+++
T Consensus 92 ~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 92 HLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVD 161 (454)
T ss_dssp TCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECC
Confidence 45666666665554 4432 2445555555555442 2210 1345555555555543 44 35555555555555
Q ss_pred cccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCc
Q 006206 160 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPI 239 (657)
Q Consensus 160 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 239 (657)
+|++++ +|..+ .+|++|++++|++++ +| .+..+++|++|++++|++.+ +|.. .++|++|++++|.++ .+
T Consensus 162 ~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~l 230 (454)
T 1jl5_A 162 NNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-EL 230 (454)
T ss_dssp SSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SC
T ss_pred CCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cc
Confidence 555443 33221 244555555554443 33 34444455555554444442 2211 124444444444444 33
Q ss_pred hhhccCCCCCCeEEcCCCCC
Q 006206 240 PRSFRALNKLEDLRIGDLSA 259 (657)
Q Consensus 240 ~~~l~~l~~L~~L~l~~~~~ 259 (657)
| .+..+++|++|++++|.+
T Consensus 231 p-~~~~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 231 P-ELQNLPFLTTIYADNNLL 249 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCC
T ss_pred c-ccCCCCCCCEEECCCCcC
Confidence 3 244444444444444433
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=3.3e-25 Score=248.26 Aligned_cols=255 Identities=27% Similarity=0.346 Sum_probs=213.6
Q ss_pred ceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEee
Q 006206 80 HITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 159 (657)
Q Consensus 80 ~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 159 (657)
+++.|+++++++. .+|..+. ++|++|+|++|.++ .+|. .+++|++|+|++|+++ .+|. .+++|++|+|+
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 5899999999987 7787665 89999999999998 5665 5789999999999998 5666 78999999999
Q ss_pred cccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCc
Q 006206 160 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPI 239 (657)
Q Consensus 160 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 239 (657)
+|.+++ +|. .+++|+.|++++|+++. +|.. +++|++|++++|++++ +|. .+++|+.|++++|.+++ +
T Consensus 110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l 176 (622)
T 3g06_A 110 SNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-L 176 (622)
T ss_dssp SCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred CCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-C
Confidence 999985 454 57899999999999985 5553 4899999999999985 343 35789999999999985 5
Q ss_pred hhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCCC
Q 006206 240 PRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLS 319 (657)
Q Consensus 240 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 319 (657)
| ..+++|+.|++++|.+..... .+++|+.|++++|.++ .+|.. +++|+.|+|++|++++ +| ..++
T Consensus 177 ~---~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~ 241 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLPS 241 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCCT
T ss_pred c---ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCCC
Confidence 5 557899999999998876432 3579999999999998 55543 4889999999999985 66 4668
Q ss_pred CCcEEEccCCcCCCCCCccccCCCCceEecccccCCCCCCccccC-CCcE-EEeecCCcC
Q 006206 320 TLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSIN 377 (657)
Q Consensus 320 ~L~~L~L~~N~l~~~~p~~~~~~~L~~LdLs~N~l~g~~p~~~~~-~~l~-~~l~~n~~~ 377 (657)
+|+.|+|++|+++ .+|. .+++|+.|+|++|+|+ .+|..+.. +.|+ +++.+|++.
T Consensus 242 ~L~~L~Ls~N~L~-~lp~--~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 242 ELKELMVSGNRLT-SLPM--LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp TCCEEECCSSCCS-CCCC--CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCC
T ss_pred cCcEEECCCCCCC-cCCc--ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCC
Confidence 9999999999999 6775 6789999999999999 77887777 6666 899999886
No 63
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=1.5e-25 Score=243.34 Aligned_cols=267 Identities=23% Similarity=0.265 Sum_probs=178.9
Q ss_pred CceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCC-------------CeeEcccCcCCCCCCc
Q 006206 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNM-------------QYLSLGINNFTGRVPT 145 (657)
Q Consensus 79 ~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L-------------~~L~Ls~n~l~~~~p~ 145 (657)
.++++|+++++++ |.+|++++++++|++|++++|.+.+.+|..++++++| ++|++++|.+++ +|.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence 4788899999888 8899999999999999999999888889888888764 888999888884 454
Q ss_pred cccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcc
Q 006206 146 ELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTEL 225 (657)
Q Consensus 146 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 225 (657)
. .++|++|++++|.+++ +|.. +++|++|++++|++++ +|.. .++|++|++++|++++ +| .+..+++|
T Consensus 89 ~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L 155 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFL 155 (454)
T ss_dssp C---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTC
T ss_pred C---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCC
Confidence 2 3678888888888886 5543 3678888888888874 3321 1578888888888875 56 47888888
Q ss_pred cEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCC
Q 006206 226 ADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFN 305 (657)
Q Consensus 226 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 305 (657)
++|++++|.+++ +|.. ..+|++|++++|.+.... .+..+++|++|++++|.+++ +|.. .++|+.|++++|
T Consensus 156 ~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n 225 (454)
T 1jl5_A 156 KIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNN 225 (454)
T ss_dssp CEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSS
T ss_pred CEEECCCCcCcc-cCCC---cccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCC
Confidence 888888888875 4443 247888888888776643 47778888888888888874 4432 257888888888
Q ss_pred CCCCCCchhccCCCCCcEEEccCCcCCCCCCccccCCCCceEecccccCCCCCCccccCCCcEEEeecCCcC
Q 006206 306 KLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRNFAKGGLSMNVIGSSIN 377 (657)
Q Consensus 306 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~LdLs~N~l~g~~p~~~~~~~l~~~l~~n~~~ 377 (657)
+++ .+|. +..+++|++|++++|++++ +|. .+++|++|++++|++++ +|..+ ...-.+++++|.+.
T Consensus 226 ~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~--~~~~L~~L~l~~N~l~~-l~~~~-~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 226 ILE-ELPE-LQNLPFLTTIYADNNLLKT-LPD--LPPSLEALNVRDNYLTD-LPELP-QSLTFLDVSENIFS 290 (454)
T ss_dssp CCS-SCCC-CTTCTTCCEEECCSSCCSS-CCS--CCTTCCEEECCSSCCSC-CCCCC-TTCCEEECCSSCCS
T ss_pred cCC-cccc-cCCCCCCCEEECCCCcCCc-ccc--cccccCEEECCCCcccc-cCccc-CcCCEEECcCCccC
Confidence 887 6663 7788888888888888874 553 24778888888888876 55322 22223777777765
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=3.6e-26 Score=250.72 Aligned_cols=224 Identities=19% Similarity=0.172 Sum_probs=156.7
Q ss_pred CChhccCCC----CCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchh
Q 006206 95 LPSELFMLR----KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKE 170 (657)
Q Consensus 95 lp~~l~~l~----~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~ 170 (657)
+|..+..+. +|++|+|++|.+++..|..|+.+++|++|+|++|.+++..| |..+++|++|+|++|.+++..
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--- 96 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL--- 96 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE---
T ss_pred hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC---
Confidence 444454443 79999999999988778889999999999999999886554 888899999999998887432
Q ss_pred hcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhcc-CCCCC
Q 006206 171 LGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFR-ALNKL 249 (657)
Q Consensus 171 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L 249 (657)
..++|++|++++|.+++..+. .+++|+.|+|++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|
T Consensus 97 --~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L 171 (487)
T 3oja_A 97 --VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171 (487)
T ss_dssp --ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred --CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc
Confidence 237888888888888865543 457888888888888887777788888888888888888877776664 56667
Q ss_pred CeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCCCCCcEEEccCC
Q 006206 250 EDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNN 329 (657)
Q Consensus 250 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N 329 (657)
+.|+|++|.+... .....+++|++|+|++|.+++..| .+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|
T Consensus 172 ~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 172 EHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp CEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTC
T ss_pred cEEecCCCccccc--cccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCC
Confidence 7776666655443 112235556666666666554333 3555555666666666555 34555555555555555555
Q ss_pred cCC
Q 006206 330 NLS 332 (657)
Q Consensus 330 ~l~ 332 (657)
.+.
T Consensus 248 ~l~ 250 (487)
T 3oja_A 248 GFH 250 (487)
T ss_dssp CBC
T ss_pred CCc
Confidence 555
No 65
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=6e-24 Score=214.81 Aligned_cols=218 Identities=20% Similarity=0.260 Sum_probs=157.9
Q ss_pred CCCCCCCCCCCCCCCCCCeeeecCCCCCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCe
Q 006206 52 IDPCTRNASWASENANPRVACDCTSNSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQY 131 (657)
Q Consensus 52 ~d~C~~~~~W~~~~~~~~v~C~~~~~~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 131 (657)
.|.|. | .+..|.|.. +.+.++++++++. .+|..+. ++|++|+|++|.+++..+..|..+++|++
T Consensus 2 ~~~C~----~------~~~~C~c~~---~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~ 65 (270)
T 2o6q_A 2 EALCK----K------DGGVCSCNN---NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRL 65 (270)
T ss_dssp CCCBG----G------GTCSBEEET---TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCE
T ss_pred CccCC----C------CCCCCEeCC---CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCE
Confidence 47787 7 578888753 4568888888876 4665443 57888888888888666667888888888
Q ss_pred eEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcC
Q 006206 132 LSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLF 211 (657)
Q Consensus 132 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 211 (657)
|+|++|.++...+..|.++++|++|+|++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|+|++|++
T Consensus 66 L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 145 (270)
T 2o6q_A 66 LYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145 (270)
T ss_dssp EECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcC
Confidence 88888888855555667888888888888888766666677788888888888888776666777777788888877777
Q ss_pred CCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccc
Q 006206 212 TGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQL 291 (657)
Q Consensus 212 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l 291 (657)
.+..+..+..+++|++|++++|.+++..+.. +..+++|++|+|++|.+++..+..+
T Consensus 146 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------------------------~~~l~~L~~L~L~~N~l~~~~~~~~ 201 (270)
T 2o6q_A 146 QSLPKGVFDKLTSLKELRLYNNQLKRVPEGA------------------------FDKLTELKTLKLDNNQLKRVPEGAF 201 (270)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTT------------------------TTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CccCHhHccCCcccceeEecCCcCcEeChhH------------------------hccCCCcCEEECCCCcCCcCCHHHh
Confidence 7655555666677777777766666444433 4445566666666666665555556
Q ss_pred cCCCCCcEEeccCCCCCC
Q 006206 292 GTFAKLQLLDLSFNKLTG 309 (657)
Q Consensus 292 ~~l~~L~~L~Ls~n~l~~ 309 (657)
..+++|+.|+|++|.+..
T Consensus 202 ~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 202 DSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTCTTCCEEECCSSCBCC
T ss_pred ccccCCCEEEecCCCeeC
Confidence 677777777777777653
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1.9e-25 Score=231.42 Aligned_cols=247 Identities=22% Similarity=0.208 Sum_probs=205.4
Q ss_pred CCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeecc
Q 006206 104 KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYID 183 (657)
Q Consensus 104 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 183 (657)
.++.++++.+.+.......+..+++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 35566777777754445556778899999999999998878899999999999999999986554 8899999999999
Q ss_pred cccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCC
Q 006206 184 SSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDST 263 (657)
Q Consensus 184 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 263 (657)
+|.+++. ...++|++|++++|++.+..+. .+++|++|++++|.+++..+..+..+++|+.|++++|.+....
T Consensus 89 ~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQEL-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEEE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCccccc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 9998742 2448999999999999865544 4678999999999999888888999999999999999988876
Q ss_pred hhhh-hcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcCCCCCCccc-cC
Q 006206 264 LDFL-ESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI-IA 341 (657)
Q Consensus 264 ~~~l-~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~-~~ 341 (657)
+..+ ..+++|++|+|++|.+++. +. ...+++|+.|+|++|++++ +|..+..+++|+.|+|++|+++ .+|..+ .+
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l 236 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred HHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcC
Confidence 6655 4789999999999999855 33 3358999999999999984 5556899999999999999999 566555 57
Q ss_pred CCCceEecccccCC-CCCCccccC
Q 006206 342 PNLIALDVSYNPLS-GNLPRNFAK 364 (657)
Q Consensus 342 ~~L~~LdLs~N~l~-g~~p~~~~~ 364 (657)
++|+.|+|++|+++ +.+|..+..
T Consensus 237 ~~L~~L~l~~N~~~~~~~~~~~~~ 260 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGTLRDFFSK 260 (317)
T ss_dssp TTCCEEECTTCCCBHHHHHHHHHT
T ss_pred CCCCEEEccCCCccCcCHHHHHhc
Confidence 89999999999998 655544433
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=5.4e-24 Score=215.86 Aligned_cols=217 Identities=22% Similarity=0.252 Sum_probs=143.4
Q ss_pred cCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcC
Q 006206 94 ELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGK 173 (657)
Q Consensus 94 ~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 173 (657)
.+|..+. ++|++|++++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|.+.+..+..+.+
T Consensus 21 ~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 3454332 46888888888888666667888888888888888888666667888888888888888887766677777
Q ss_pred CCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCC-CchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeE
Q 006206 174 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGK-IPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDL 252 (657)
Q Consensus 174 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 252 (657)
+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-- 176 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP-- 176 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT--
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc--
Confidence 88888888888877766555677777777777777777652 456666666666666666665544333333322222
Q ss_pred EcCCCCCCCCChhhhhcCCCCC-EEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcC
Q 006206 253 RIGDLSAEDSTLDFLESQKSLS-ILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNL 331 (657)
Q Consensus 253 ~l~~~~~~~~~~~~l~~~~~L~-~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l 331 (657)
.|. +|++++|.+++..+..+. ..+|+.|+|++|++++..+..+..+++|+.|+|++|++
T Consensus 177 -------------------~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 177 -------------------LLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp -------------------TCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred -------------------ccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 222 566777776644443332 34677777777776654444456666666666666666
Q ss_pred CCC
Q 006206 332 SGE 334 (657)
Q Consensus 332 ~~~ 334 (657)
++.
T Consensus 237 ~c~ 239 (276)
T 2z62_A 237 DCS 239 (276)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 68
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.91 E-value=4.5e-27 Score=256.61 Aligned_cols=278 Identities=19% Similarity=0.202 Sum_probs=137.8
Q ss_pred ceeEEEEecCCCCc----cCChhccCCCCCCEEEccCCCCCCCCchhc-CCCC----CCCeeEcccCcCCC----CCCcc
Q 006206 80 HITHLKIYALDIMG----ELPSELFMLRKLMDLNLGQNVLNGSIPAEI-GQLS----NMQYLSLGINNFTG----RVPTE 146 (657)
Q Consensus 80 ~v~~L~l~~~~l~~----~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~----~L~~L~Ls~n~l~~----~~p~~ 146 (657)
++++|+++++.+.+ .++..+..+++|++|+|++|.++...+..+ ..++ +|++|+|++|.++. .++..
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 108 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST 108 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHH
Confidence 45666666666543 344555566666666666666543322222 2233 46666666666652 34555
Q ss_pred ccCCCCCcEEEeecccCCCCCchhh-----cCCCCCCeeecccccCCCC----CchhccCCCCCcEEEccCCcCCCCCch
Q 006206 147 LGNLTKLISLSFSSNNFFGPLPKEL-----GKLTSLQQLYIDSSGVTGS----IPQEFANLKSLRILWASDNLFTGKIPE 217 (657)
Q Consensus 147 ~~~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~~~ 217 (657)
+.++++|++|+|++|.+....+..+ ...++|++|++++|.++.. ++..+..+++|++|++++|.+....+.
T Consensus 109 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 188 (461)
T 1z7x_W 109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR 188 (461)
T ss_dssp TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHH
Confidence 6666666666666666543322221 1234566666666665542 234444556666666666655432222
Q ss_pred hcC-----CCCcccEEEccCCCCCCC----chhhccCCCCCCeEEcCCCCCCCCChhh-----hhcCCCCCEEEccCccc
Q 006206 218 FFG-----TLTELADLRLQGTLLEGP----IPRSFRALNKLEDLRIGDLSAEDSTLDF-----LESQKSLSILSLRNCRV 283 (657)
Q Consensus 218 ~l~-----~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----l~~~~~L~~L~Ls~n~l 283 (657)
.+. ..++|++|++++|.++.. ++..+..+++|++|++++|.+....... ...+++|++|+|++|.+
T Consensus 189 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l 268 (461)
T 1z7x_W 189 VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI 268 (461)
T ss_dssp HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 221 234566666666655543 3445555556666666555443322111 11345555555555555
Q ss_pred ccC----CcccccCCCCCcEEeccCCCCCCCCchhcc-----CCCCCcEEEccCCcCCCCC----Cccc-cCCCCceEec
Q 006206 284 SGK----IPDQLGTFAKLQLLDLSFNKLTGQIPTSLQ-----DLSTLQYLYLGNNNLSGEL----PVNI-IAPNLIALDV 349 (657)
Q Consensus 284 ~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~L~~N~l~~~~----p~~~-~~~~L~~LdL 349 (657)
++. ++..+..+++|++|++++|.+++..+..+. ..++|+.|+|++|.+++.. |..+ .+++|++|||
T Consensus 269 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 348 (461)
T 1z7x_W 269 TAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI 348 (461)
T ss_dssp CHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEEC
T ss_pred CHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEc
Confidence 532 344444455555555555555433222221 1235555555555555321 1111 2355555555
Q ss_pred ccccCCCC
Q 006206 350 SYNPLSGN 357 (657)
Q Consensus 350 s~N~l~g~ 357 (657)
++|++++.
T Consensus 349 s~n~i~~~ 356 (461)
T 1z7x_W 349 SNNRLEDA 356 (461)
T ss_dssp CSSBCHHH
T ss_pred cCCccccc
Confidence 55555443
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=3e-25 Score=243.34 Aligned_cols=236 Identities=18% Similarity=0.127 Sum_probs=207.3
Q ss_pred CCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEE
Q 006206 78 SCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLS 157 (657)
Q Consensus 78 ~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 157 (657)
..+++.|+|++|.+.+..|..|..+++|++|+|++|.+++..| ++.+++|++|+|++|.+++. | ..++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEEE
Confidence 3489999999999999888899999999999999999986655 99999999999999999843 3 238999999
Q ss_pred eecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcC-CCCcccEEEccCCCCC
Q 006206 158 FSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFG-TLTELADLRLQGTLLE 236 (657)
Q Consensus 158 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~ 236 (657)
+++|.+.+..+. .+++|+.|+|++|.+++..|..+..+++|+.|+|++|.+++.+|..+. .+++|++|+|++|.++
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 999999876554 468999999999999998898999999999999999999988888776 7999999999999998
Q ss_pred CCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCC-CCCchhc
Q 006206 237 GPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLT-GQIPTSL 315 (657)
Q Consensus 237 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~l 315 (657)
+..+ +..+++|+.|++++|.+...++. +..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+. +.+|..+
T Consensus 183 ~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 183 DVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp EEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred cccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 6532 44689999999999998876554 8889999999999999995 7888899999999999999998 6677788
Q ss_pred cCCCCCcEEEcc
Q 006206 316 QDLSTLQYLYLG 327 (657)
Q Consensus 316 ~~l~~L~~L~L~ 327 (657)
..++.|+.|+++
T Consensus 259 ~~l~~L~~l~~~ 270 (487)
T 3oja_A 259 SKNQRVQTVAKQ 270 (487)
T ss_dssp TTCHHHHHHHHH
T ss_pred HhCCCCcEEecc
Confidence 888888777775
No 70
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.91 E-value=1.8e-26 Score=251.82 Aligned_cols=300 Identities=16% Similarity=0.137 Sum_probs=216.2
Q ss_pred CCceeEEEEecCCCCccCChhc-cCCC----CCCEEEccCCCCCC----CCchhcCCCCCCCeeEcccCcCCCCCCccc-
Q 006206 78 SCHITHLKIYALDIMGELPSEL-FMLR----KLMDLNLGQNVLNG----SIPAEIGQLSNMQYLSLGINNFTGRVPTEL- 147 (657)
Q Consensus 78 ~~~v~~L~l~~~~l~~~lp~~l-~~l~----~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~- 147 (657)
..++++|+++++.+.+..+..+ ..++ +|++|+|++|.++. .++..+..+++|++|+|++|.++...+..+
T Consensus 55 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 134 (461)
T 1z7x_W 55 NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLC 134 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHH
T ss_pred CCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHH
Confidence 3578889998888766444333 2344 68999999988874 457788888899999999888864433322
Q ss_pred ----cCCCCCcEEEeecccCCCCC----chhhcCCCCCCeeecccccCCCCCchhcc-----CCCCCcEEEccCCcCCCC
Q 006206 148 ----GNLTKLISLSFSSNNFFGPL----PKELGKLTSLQQLYIDSSGVTGSIPQEFA-----NLKSLRILWASDNLFTGK 214 (657)
Q Consensus 148 ----~~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~Ls~n~l~~~ 214 (657)
...++|++|+|++|.+++.. +..+..+++|++|++++|.+....+..+. .+++|++|++++|.++..
T Consensus 135 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 214 (461)
T 1z7x_W 135 EGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD 214 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT
T ss_pred HHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHH
Confidence 23567999999988887543 45566778899999998887654444332 366899999999988764
Q ss_pred ----CchhcCCCCcccEEEccCCCCCCCc-----hhhccCCCCCCeEEcCCCCCCCC----ChhhhhcCCCCCEEEccCc
Q 006206 215 ----IPEFFGTLTELADLRLQGTLLEGPI-----PRSFRALNKLEDLRIGDLSAEDS----TLDFLESQKSLSILSLRNC 281 (657)
Q Consensus 215 ----~~~~l~~l~~L~~L~l~~n~l~~~~-----~~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~Ls~n 281 (657)
++..+..+++|++|++++|.+.... +..+..+++|++|++++|.+... .+..+..+++|++|+|++|
T Consensus 215 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 215 NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 5667778888999999988876532 22334578899999988877654 2445666888999999998
Q ss_pred ccccCCccccc-----CCCCCcEEeccCCCCCCC----CchhccCCCCCcEEEccCCcCCCCCCcccc------CCCCce
Q 006206 282 RVSGKIPDQLG-----TFAKLQLLDLSFNKLTGQ----IPTSLQDLSTLQYLYLGNNNLSGELPVNII------APNLIA 346 (657)
Q Consensus 282 ~l~~~~p~~l~-----~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~------~~~L~~ 346 (657)
.+++..+..+. ..++|+.|++++|.+++. ++..+..+++|++|+|++|.+++..+..+. .++|++
T Consensus 295 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~ 374 (461)
T 1z7x_W 295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV 374 (461)
T ss_dssp CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred CCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEE
Confidence 88755444332 236889999999988765 456667788899999999988754433221 468899
Q ss_pred EecccccCCC----CCCccccC-CCcE-EEeecCCcC
Q 006206 347 LDVSYNPLSG----NLPRNFAK-GGLS-MNVIGSSIN 377 (657)
Q Consensus 347 LdLs~N~l~g----~~p~~~~~-~~l~-~~l~~n~~~ 377 (657)
|+|++|++++ .+|..+.. +.|+ +++++|++.
T Consensus 375 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 375 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp EECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred EECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 9999998885 66766654 5554 888888875
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=8.4e-24 Score=214.43 Aligned_cols=208 Identities=18% Similarity=0.171 Sum_probs=173.7
Q ss_pred CCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEE
Q 006206 78 SCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLS 157 (657)
Q Consensus 78 ~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 157 (657)
..++++|+++++.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|+|++|.+++..+..|.++++|++|+
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 34699999999999887777899999999999999999977777899999999999999999988888999999999999
Q ss_pred eecccCCCCCchhhcCCCCCCeeecccccCCC-CCchhccCCCCCcEEEccCCcCCCCCchhcCCCCccc----EEEccC
Q 006206 158 FSSNNFFGPLPKELGKLTSLQQLYIDSSGVTG-SIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELA----DLRLQG 232 (657)
Q Consensus 158 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~----~L~l~~ 232 (657)
+++|.+.+..+..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|++++..+..+..+++|+ +|++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 99999998777779999999999999999986 3689999999999999999999987777777666666 788888
Q ss_pred CCCCCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCC
Q 006206 233 TLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQ 310 (657)
Q Consensus 233 n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 310 (657)
|.+++..+..+. ..+|++|+|++|.+++..+..+..+++|+.|+|++|.+++.
T Consensus 187 n~l~~~~~~~~~-------------------------~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 187 NPMNFIQPGAFK-------------------------EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp SCCCEECTTSSC-------------------------SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred CcccccCccccC-------------------------CCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 877643332221 12567777777777755555667788888888888887754
No 72
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=1.2e-22 Score=227.69 Aligned_cols=244 Identities=25% Similarity=0.309 Sum_probs=205.2
Q ss_pred CceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEe
Q 006206 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 158 (657)
Q Consensus 79 ~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 158 (657)
.+++.|++++|.+. .+|. .+++|++|+|++|.++ .+|. .+++|++|+|++|.+++ +|. .+++|+.|++
T Consensus 61 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEEC
T ss_pred CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEEC
Confidence 58999999999987 5665 5789999999999998 5665 77999999999999984 555 6789999999
Q ss_pred ecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCC
Q 006206 159 SSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGP 238 (657)
Q Consensus 159 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 238 (657)
++|+++. +|.. +++|++|+|++|.+++ +|. .+++|+.|++++|.+++ +| ..+++|+.|++++|.+++
T Consensus 129 ~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~- 195 (622)
T 3g06_A 129 FGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS- 195 (622)
T ss_dssp CSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-
T ss_pred CCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-
Confidence 9999985 5553 4899999999999985 453 35789999999999985 55 567899999999999985
Q ss_pred chhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCC
Q 006206 239 IPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDL 318 (657)
Q Consensus 239 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 318 (657)
+|. .+++|+.|++++|.+..... .+++|++|+|++|.+++ +| ..+++|+.|+|++|+|+ .+|. .+
T Consensus 196 l~~---~~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~ 260 (622)
T 3g06_A 196 LPT---LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LP 260 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CC
T ss_pred CCC---ccchhhEEECcCCcccccCC----CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---cc
Confidence 443 35799999999998876442 35889999999999995 66 45689999999999998 5665 67
Q ss_pred CCCcEEEccCCcCCCCCCccc-cCCCCceEecccccCCCCCCcccc
Q 006206 319 STLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFA 363 (657)
Q Consensus 319 ~~L~~L~L~~N~l~~~~p~~~-~~~~L~~LdLs~N~l~g~~p~~~~ 363 (657)
++|+.|+|++|+++ .+|..+ .+++|+.|+|++|++++.+|..+.
T Consensus 261 ~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 261 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred ccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 89999999999999 778655 579999999999999998887554
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.3e-22 Score=205.05 Aligned_cols=200 Identities=22% Similarity=0.265 Sum_probs=87.4
Q ss_pred CCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeeccc
Q 006206 105 LMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDS 184 (657)
Q Consensus 105 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 184 (657)
++.++++++.++ .+|..+. ++|++|+|++|++++..+..|.++++|++|+|++|.++...+..|.++++|++|+|++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 455555555555 3443332 3455555555555544444455555555555555555433333344444455555544
Q ss_pred ccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCCh
Q 006206 185 SGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTL 264 (657)
Q Consensus 185 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 264 (657)
|.+.+..+..+..+++|++|++++ |.+++..+..+..+++|++|++++|.+.....
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~------------------------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 150 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDR------------------------NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK 150 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCS------------------------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCC------------------------CccCeeCHHHhCcCcCCCEEECCCCcCCccCH
Confidence 444433333334444444444444 44433333333333333333333332222222
Q ss_pred hhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcC
Q 006206 265 DFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNL 331 (657)
Q Consensus 265 ~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l 331 (657)
..+..+++|++|+|++|.+++..+..+..+++|++|+|++|++++..+..+..+++|+.|+|++|.+
T Consensus 151 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 2233334444444444444433333444444444444444444433333344444444444444443
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.4e-23 Score=212.43 Aligned_cols=205 Identities=19% Similarity=0.235 Sum_probs=133.2
Q ss_pred CCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcE
Q 006206 124 GQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRI 203 (657)
Q Consensus 124 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 203 (657)
..+++|+.|++++|.+. .++ .+..+++|++|++++|.+.+. +.+..+++|++|++++|.+++..+..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 34555666666665554 222 355555555555555555431 24555555555555555555444444455555555
Q ss_pred EEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCccc
Q 006206 204 LWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRV 283 (657)
Q Consensus 204 L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l 283 (657)
|++++|++.+..+. .+..+++|+.|++++|.+....+..+..+++|++|+|++|++
T Consensus 114 L~L~~n~l~~~~~~------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 169 (272)
T 3rfs_A 114 LVLVENQLQSLPDG------------------------VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169 (272)
T ss_dssp EECTTSCCCCCCTT------------------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHH------------------------HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCc
Confidence 55555555544444 444444455555555444444444455667788888888888
Q ss_pred ccCCcccccCCCCCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcCCCCCCccccCCCCceEecccccCCCCCCccc
Q 006206 284 SGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRNF 362 (657)
Q Consensus 284 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~LdLs~N~l~g~~p~~~ 362 (657)
++..+..+..+++|+.|++++|++++..|..+..+++|+.|+|++|.+.+..| +|+.|+++.|.++|.+|..+
T Consensus 170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~------~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 170 QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP------GIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT------TTHHHHHHHHHTGGGBBCTT
T ss_pred CccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc------HHHHHHHHHHhCCCcccCcc
Confidence 87777777888999999999999998777778889999999999998876544 68899999999999888544
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=2.7e-23 Score=210.19 Aligned_cols=204 Identities=23% Similarity=0.260 Sum_probs=134.4
Q ss_pred ccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCC
Q 006206 99 LFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQ 178 (657)
Q Consensus 99 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 178 (657)
+..+++|+.|++++|.+.. + ..+..+++|++|+|++|.+++ + ..+.++++|++|+|++|.+++..+..+.++++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 4556778888888877752 2 346777888888888888774 2 3677788888888888888776666677788888
Q ss_pred eeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCC
Q 006206 179 QLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLS 258 (657)
Q Consensus 179 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (657)
+|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~------- 185 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD------- 185 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE-------
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCE-------
Confidence 8888888887766666777888888888888877666666677777777777777776554444444444444
Q ss_pred CCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcCCCCCCc
Q 006206 259 AEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPV 337 (657)
Q Consensus 259 ~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 337 (657)
|+|++|.+++..+..+..+++|+.|++++|.+.+. ++.|+.|++..|.++|.+|.
T Consensus 186 -----------------L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 186 -----------------LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp -----------------EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBC
T ss_pred -----------------EECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccC
Confidence 44444444444444445555555555555554422 33455555555555555553
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=1.9e-22 Score=205.76 Aligned_cols=203 Identities=23% Similarity=0.233 Sum_probs=98.3
Q ss_pred ccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCC
Q 006206 99 LFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQ 178 (657)
Q Consensus 99 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 178 (657)
+.++++|++++++++.++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|.+++. +. ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCC
Confidence 455666666666666665 3444332 4566666666666655555566666666666666655532 21 14455555
Q ss_pred eeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCC
Q 006206 179 QLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLS 258 (657)
Q Consensus 179 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (657)
+|+|++|.+. .+|..+..+++|++|++++|++++..+..+..+++|++|++++|.+++
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~--------------------- 138 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT--------------------- 138 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC---------------------
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc---------------------
Confidence 5555555554 344444444444444444444443333333333333333333333332
Q ss_pred CCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcCC
Q 006206 259 AEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLS 332 (657)
Q Consensus 259 ~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~ 332 (657)
.....+..+++|+.|+|++|++++..+..+..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|.+.
T Consensus 139 ---~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 139 ---LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp ---CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ---cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 22222333344444444444444333333444555555555555554 34444444444444444444443
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=2.2e-22 Score=205.32 Aligned_cols=201 Identities=20% Similarity=0.172 Sum_probs=168.4
Q ss_pred CCCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEE
Q 006206 77 NSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISL 156 (657)
Q Consensus 77 ~~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 156 (657)
...++++++++++++. .+|..+. ++|++|+|++|.+++..+..|..+++|++|+|++|.+++. +. ...+++|++|
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCCEE
T ss_pred ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCCEE
Confidence 4568999999998886 5666554 6899999999999987888999999999999999999854 43 3789999999
Q ss_pred EeecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCC
Q 006206 157 SFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLE 236 (657)
Q Consensus 157 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 236 (657)
+|++|.+. .+|..+..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|.++
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 99999998 67888899999999999999999887888999999999999999999887777888888999988888887
Q ss_pred CCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCC
Q 006206 237 GPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLT 308 (657)
Q Consensus 237 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 308 (657)
...+..+. .+++|++|+|++|+++ .+|..+..+++|+.|+|++|.+.
T Consensus 162 ~l~~~~~~------------------------~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 162 ELPAGLLN------------------------GLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCTTTTT------------------------TCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccCHHHhc------------------------CcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 54443334 4456666666677776 56777777788999999998876
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=7e-24 Score=221.32 Aligned_cols=253 Identities=13% Similarity=0.130 Sum_probs=141.6
Q ss_pred eeEEEEecCCCCccCChhccCC--CCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCC-CCccccCCCCCcEEE
Q 006206 81 ITHLKIYALDIMGELPSELFML--RKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGR-VPTELGNLTKLISLS 157 (657)
Q Consensus 81 v~~L~l~~~~l~~~lp~~l~~l--~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~ 157 (657)
++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|+|++|.+++. +|..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 455666555443 2334444 5555555555555543333 33445555555555554433 444444455555555
Q ss_pred eecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCC-cCCC-CCchhcCCCCcccEEEccCC-C
Q 006206 158 FSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDN-LFTG-KIPEFFGTLTELADLRLQGT-L 234 (657)
Q Consensus 158 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~-~~~~~l~~l~~L~~L~l~~n-~ 234 (657)
|++|.+++ ..+..+..+++|++|++++| .+++ .++..+..+++|++|++++| .
T Consensus 125 L~~~~l~~------------------------~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~ 180 (336)
T 2ast_B 125 LEGLRLSD------------------------PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD 180 (336)
T ss_dssp CTTCBCCH------------------------HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred CcCcccCH------------------------HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCC
Confidence 55554444 44444444455555555554 3332 13334444555555555555 4
Q ss_pred CCCC-chhhccCCC-CCCeEEcCCCC--CC-CCChhhhhcCCCCCEEEccCcc-cccCCcccccCCCCCcEEeccCCC-C
Q 006206 235 LEGP-IPRSFRALN-KLEDLRIGDLS--AE-DSTLDFLESQKSLSILSLRNCR-VSGKIPDQLGTFAKLQLLDLSFNK-L 307 (657)
Q Consensus 235 l~~~-~~~~l~~l~-~L~~L~l~~~~--~~-~~~~~~l~~~~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~n~-l 307 (657)
+++. ++..+..++ +|++|++++|. +. ...+..+..+++|++|+|++|. +++..+..+..+++|++|++++|. +
T Consensus 181 l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 260 (336)
T 2ast_B 181 FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 260 (336)
T ss_dssp CCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred cChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC
Confidence 4432 344555555 66666666552 22 1123445667788888888887 666677778888888888888885 3
Q ss_pred CCCCchhccCCCCCcEEEccCCcCCCCCCccccCCCCceEecccccCCCCCCcccc
Q 006206 308 TGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRNFA 363 (657)
Q Consensus 308 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~LdLs~N~l~g~~p~~~~ 363 (657)
.......+..+++|+.|++++| ++...-. .....+..|++++|++++..|..+.
T Consensus 261 ~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~-~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 261 IPETLLELGEIPTLKTLQVFGI-VPDGTLQ-LLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp CGGGGGGGGGCTTCCEEECTTS-SCTTCHH-HHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CHHHHHHHhcCCCCCEEeccCc-cCHHHHH-HHHhhCcceEEecccCccccCCccc
Confidence 3222235778889999999988 3321100 0124577788899999988886543
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=6.9e-23 Score=211.36 Aligned_cols=202 Identities=18% Similarity=0.183 Sum_probs=135.1
Q ss_pred CCCcEEEeecccCCCCCchhh--cCCCCCCeeecccccCCCCCc----hhccCCCCCcEEEccCCcCCCCCchhcCCCCc
Q 006206 151 TKLISLSFSSNNFFGPLPKEL--GKLTSLQQLYIDSSGVTGSIP----QEFANLKSLRILWASDNLFTGKIPEFFGTLTE 224 (657)
Q Consensus 151 ~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 224 (657)
++|++|++++|.+.+..|..+ ..+++|++|+|++|.+++..+ ..+..+++|++|+|++|++.+..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 445555555555555555544 555555555555555554333 22345566666666666666555566666666
Q ss_pred ccEEEccCCCCCCC--ch--hhccCCCCCCeEEcCCCCCCCCChh---hhhcCCCCCEEEccCcccccCCcccccCC---
Q 006206 225 LADLRLQGTLLEGP--IP--RSFRALNKLEDLRIGDLSAEDSTLD---FLESQKSLSILSLRNCRVSGKIPDQLGTF--- 294 (657)
Q Consensus 225 L~~L~l~~n~l~~~--~~--~~l~~l~~L~~L~l~~~~~~~~~~~---~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l--- 294 (657)
|++|++++|.+.+. ++ ..+..+++|++|++++|.+...... .+..+++|++|+|++|++++..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 66666666665432 21 1235667777777777776533211 34678899999999999988777777666
Q ss_pred CCCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcCCCCCCccccCCCCceEecccccCCC
Q 006206 295 AKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSG 356 (657)
Q Consensus 295 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~LdLs~N~l~g 356 (657)
++|++|+|++|+++ .+|..+. ++|+.|+|++|++++ +|....+++|++|+|++|+++.
T Consensus 251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCCTTSCCCCSCEECSSTTTSC
T ss_pred CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-CchhhhCCCccEEECcCCCCCC
Confidence 69999999999998 6777664 799999999999985 3544457899999999999874
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1.5e-22 Score=208.80 Aligned_cols=226 Identities=20% Similarity=0.176 Sum_probs=182.8
Q ss_pred CCCCCEEEccCCCCCCCC-ch--hcCCCCCCCeeEcccCcCCCCCCccc--cCCCCCcEEEeecccCCCCCc----hhhc
Q 006206 102 LRKLMDLNLGQNVLNGSI-PA--EIGQLSNMQYLSLGINNFTGRVPTEL--GNLTKLISLSFSSNNFFGPLP----KELG 172 (657)
Q Consensus 102 l~~L~~L~Ls~n~l~~~~-p~--~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~Ls~n~l~~~~p----~~l~ 172 (657)
...++.|.+.++.++... .. .+..+++|++|+|++|.+++..|..+ .++++|++|+|++|.+.+..+ ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 345788888888775321 11 12235679999999999999999888 899999999999999987655 3456
Q ss_pred CCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCC--C--chhcCCCCcccEEEccCCCCCCCchh----hcc
Q 006206 173 KLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGK--I--PEFFGTLTELADLRLQGTLLEGPIPR----SFR 244 (657)
Q Consensus 173 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~~----~l~ 244 (657)
.+++|++|+|++|.+.+..+..+..+++|++|+|++|++.+. + +..+..+++|++|++++|.++. ++. .+.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHh
Confidence 789999999999999988888999999999999999998642 2 2234688999999999999973 333 357
Q ss_pred CCCCCCeEEcCCCCCCCCChhhhhcC---CCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCCCCC
Q 006206 245 ALNKLEDLRIGDLSAEDSTLDFLESQ---KSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTL 321 (657)
Q Consensus 245 ~l~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 321 (657)
.+++|++|++++|.+....+..+..+ ++|++|+|++|+++ .+|..+. ++|+.|+|++|++++ +|. +..+++|
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~L 296 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELPEV 296 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCCCC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhhCCCc
Confidence 88999999999999888755555554 79999999999999 6787664 899999999999995 344 6788999
Q ss_pred cEEEccCCcCCC
Q 006206 322 QYLYLGNNNLSG 333 (657)
Q Consensus 322 ~~L~L~~N~l~~ 333 (657)
+.|+|++|+++.
T Consensus 297 ~~L~L~~N~l~~ 308 (310)
T 4glp_A 297 DNLTLDGNPFLV 308 (310)
T ss_dssp SCEECSSTTTSC
T ss_pred cEEECcCCCCCC
Confidence 999999999974
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=7.9e-24 Score=223.42 Aligned_cols=256 Identities=17% Similarity=0.141 Sum_probs=127.7
Q ss_pred EEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCc----hhcCCCC-CCCeeEcccCcCCCCCCccccCC-----CCC
Q 006206 84 LKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIP----AEIGQLS-NMQYLSLGINNFTGRVPTELGNL-----TKL 153 (657)
Q Consensus 84 L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l-----~~L 153 (657)
++++.++++|.+|..+...++|++|+|++|.+++..+ ..+..++ +|++|+|++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 3445555555555544444456666666665554433 4455555 56666666665554444444432 555
Q ss_pred cEEEeecccCCCCCchhh----cCC-CCCCeeecccccCCCCCchhc----cC-CCCCcEEEccCCcCCCCCchhcCCCC
Q 006206 154 ISLSFSSNNFFGPLPKEL----GKL-TSLQQLYIDSSGVTGSIPQEF----AN-LKSLRILWASDNLFTGKIPEFFGTLT 223 (657)
Q Consensus 154 ~~L~Ls~n~l~~~~p~~l----~~l-~~L~~L~Ls~n~l~~~~p~~l----~~-l~~L~~L~Ls~n~l~~~~~~~l~~l~ 223 (657)
++|+|++|.+++..+..+ ..+ ++|++|+|++|.++...+..+ .. .++|++|+|++|.+......
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~------ 156 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD------ 156 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH------
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH------
Confidence 555555555554444322 222 455555555555544333322 22 13455555555544422111
Q ss_pred cccEEEccCCCCCCCchhhccCCC-CCCeEEcCCCCCCCCChhh----hhcC-CCCCEEEccCcccccC----CcccccC
Q 006206 224 ELADLRLQGTLLEGPIPRSFRALN-KLEDLRIGDLSAEDSTLDF----LESQ-KSLSILSLRNCRVSGK----IPDQLGT 293 (657)
Q Consensus 224 ~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~----l~~~-~~L~~L~Ls~n~l~~~----~p~~l~~ 293 (657)
.++..+..++ +|++|++++|.+....... +..+ ++|++|+|++|.+++. ++..+..
T Consensus 157 --------------~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 157 --------------ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp --------------HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred --------------HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 1222223333 5555555555444443322 2233 3666666666666642 3333333
Q ss_pred -CCCCcEEeccCCCCCCCCc----hhccCCCCCcEEEccCCcCCCCCCc-------cc-cCCCCceEecccccCCCCCC
Q 006206 294 -FAKLQLLDLSFNKLTGQIP----TSLQDLSTLQYLYLGNNNLSGELPV-------NI-IAPNLIALDVSYNPLSGNLP 359 (657)
Q Consensus 294 -l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~L~~N~l~~~~p~-------~~-~~~~L~~LdLs~N~l~g~~p 359 (657)
.++|++|+|++|++++..+ ..+..+++|+.|+|++|.+.+..+. .+ .+++|++||+++|++....+
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 3467777777776665433 2234556677777777764422211 11 24567777777777765544
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=3.3e-24 Score=228.42 Aligned_cols=246 Identities=20% Similarity=0.257 Sum_probs=145.7
Q ss_pred cCChhccCCCCCCEEEccCCCCCCCCc----hhcCCCCCCCeeEcccCc---CCCCCCccc-------cCCCCCcEEEee
Q 006206 94 ELPSELFMLRKLMDLNLGQNVLNGSIP----AEIGQLSNMQYLSLGINN---FTGRVPTEL-------GNLTKLISLSFS 159 (657)
Q Consensus 94 ~lp~~l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~Ls~n~---l~~~~p~~~-------~~l~~L~~L~Ls 159 (657)
.++..+..+++|++|+|++|.++...+ ..+..+++|++|+|++|. +++.+|..+ .++++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 345556666667777777776654422 335566666666666643 333344333 345555555555
Q ss_pred cccCCC----CCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCC---------Cccc
Q 006206 160 SNNFFG----PLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTL---------TELA 226 (657)
Q Consensus 160 ~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l---------~~L~ 226 (657)
+|.+.. .+|..+..+++|++|+|++|.++...+..+. ..+..+ ++|+
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~--------------------~~l~~l~~~~~~~~~~~L~ 162 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA--------------------RALQELAVNKKAKNAPPLR 162 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHH--------------------HHHHHHHHHHHHHTCCCCC
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHH--------------------HHHHHHhhhhhcccCCCCc
Confidence 555543 2333444445555555555544322121111 111122 4555
Q ss_pred EEEccCCCCC-CCch---hhccCCCCCCeEEcCCCCCCCC----Chh-hhhcCCCCCEEEccCcccc----cCCcccccC
Q 006206 227 DLRLQGTLLE-GPIP---RSFRALNKLEDLRIGDLSAEDS----TLD-FLESQKSLSILSLRNCRVS----GKIPDQLGT 293 (657)
Q Consensus 227 ~L~l~~n~l~-~~~~---~~l~~l~~L~~L~l~~~~~~~~----~~~-~l~~~~~L~~L~Ls~n~l~----~~~p~~l~~ 293 (657)
+|++++|.++ +.++ ..+..+++|++|++++|.+... ... .+..+++|++|+|++|.++ ..+|..+..
T Consensus 163 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~ 242 (386)
T 2ca6_A 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242 (386)
T ss_dssp EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc
Confidence 5555555554 2333 3455566666666666655422 112 5566778888888888875 456777788
Q ss_pred CCCCcEEeccCCCCCCC----Cchhcc--CCCCCcEEEccCCcCCC----CCCccc--cCCCCceEecccccCCCCCC
Q 006206 294 FAKLQLLDLSFNKLTGQ----IPTSLQ--DLSTLQYLYLGNNNLSG----ELPVNI--IAPNLIALDVSYNPLSGNLP 359 (657)
Q Consensus 294 l~~L~~L~Ls~n~l~~~----~p~~l~--~l~~L~~L~L~~N~l~~----~~p~~~--~~~~L~~LdLs~N~l~g~~p 359 (657)
+++|++|+|++|++++. ++..+. .+++|+.|+|++|.+++ .+|..+ .+++|++|+|++|++++..|
T Consensus 243 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 88888888888888755 455553 37888888888888886 366544 26888888888888887664
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=1.9e-24 Score=230.21 Aligned_cols=243 Identities=19% Similarity=0.230 Sum_probs=166.7
Q ss_pred CchhcCCCCCCCeeEcccCcCCCCC----CccccCCCCCcEEEeecccC---CCCCchhhcCCCCCCeeecccccCCCCC
Q 006206 119 IPAEIGQLSNMQYLSLGINNFTGRV----PTELGNLTKLISLSFSSNNF---FGPLPKELGKLTSLQQLYIDSSGVTGSI 191 (657)
Q Consensus 119 ~p~~l~~l~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~Ls~n~l---~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 191 (657)
++..+..+++|++|+|++|.++... +..+.++++|++|+|++|.+ .+.+|..+.. +
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~-----------------l 86 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL-----------------L 86 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHH-----------------H
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHH-----------------H
Confidence 4455555666666666666665432 22344555666666655432 2222322210 0
Q ss_pred chhccCCCCCcEEEccCCcCCC----CCchhcCCCCcccEEEccCCCCCCCchh----hccCC---------CCCCeEEc
Q 006206 192 PQEFANLKSLRILWASDNLFTG----KIPEFFGTLTELADLRLQGTLLEGPIPR----SFRAL---------NKLEDLRI 254 (657)
Q Consensus 192 p~~l~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l---------~~L~~L~l 254 (657)
...+..+++|++|+|++|.+.. .++..+..+++|++|+|++|.+....+. .+..+ ++|++|++
T Consensus 87 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L 166 (386)
T 2ca6_A 87 LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC 166 (386)
T ss_dssp HHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred HHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEEC
Confidence 1223566666666666666665 3555666677777777777776533333 33334 89999999
Q ss_pred CCCCCCCCCh----hhhhcCCCCCEEEccCccccc-----CCcccccCCCCCcEEeccCCCCC----CCCchhccCCCCC
Q 006206 255 GDLSAEDSTL----DFLESQKSLSILSLRNCRVSG-----KIPDQLGTFAKLQLLDLSFNKLT----GQIPTSLQDLSTL 321 (657)
Q Consensus 255 ~~~~~~~~~~----~~l~~~~~L~~L~Ls~n~l~~-----~~p~~l~~l~~L~~L~Ls~n~l~----~~~p~~l~~l~~L 321 (657)
++|.+..... ..+..+++|++|+|++|+++. ..+..+..+++|+.|+|++|.++ +.+|..+..+++|
T Consensus 167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L 246 (386)
T 2ca6_A 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 246 (386)
T ss_dssp CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc
Confidence 9999874433 356788999999999999983 34447888999999999999996 5688889999999
Q ss_pred cEEEccCCcCCCC----CCccc---cCCCCceEecccccCCC----CCCccc-cC-CCcE-EEeecCCcCC
Q 006206 322 QYLYLGNNNLSGE----LPVNI---IAPNLIALDVSYNPLSG----NLPRNF-AK-GGLS-MNVIGSSINA 378 (657)
Q Consensus 322 ~~L~L~~N~l~~~----~p~~~---~~~~L~~LdLs~N~l~g----~~p~~~-~~-~~l~-~~l~~n~~~~ 378 (657)
+.|+|++|.+++. +|..+ .+++|++|+|++|++++ .+|..+ .. +.|+ +++.+|++..
T Consensus 247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 9999999999865 34332 27899999999999998 577766 33 5555 8999999874
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.1e-23 Score=219.74 Aligned_cols=202 Identities=19% Similarity=0.196 Sum_probs=153.0
Q ss_pred CceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCC-CchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEE
Q 006206 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGS-IPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLS 157 (657)
Q Consensus 79 ~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 157 (657)
.+++.|++.++.+.+..+. +..+++|++|+|++|.+++. ++..+..+++|++|+|++|.+++..|..+.++++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 5789999999998877665 67899999999999998865 888899999999999999999988888899999999999
Q ss_pred eecc-cCCCC-CchhhcCCCCCCeeecccc-cCCCC-CchhccCCC-CCcEEEccCC--cCC-CCCchhcCCCCcccEEE
Q 006206 158 FSSN-NFFGP-LPKELGKLTSLQQLYIDSS-GVTGS-IPQEFANLK-SLRILWASDN--LFT-GKIPEFFGTLTELADLR 229 (657)
Q Consensus 158 Ls~n-~l~~~-~p~~l~~l~~L~~L~Ls~n-~l~~~-~p~~l~~l~-~L~~L~Ls~n--~l~-~~~~~~l~~l~~L~~L~ 229 (657)
|++| .+++. ++..+.++++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|++|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 9999 56642 5666788899999999999 87753 566678888 8888888888 444 34556666777777777
Q ss_pred ccCCC-CCCCchhhccCCCCCCeEEcCCCC-CCCCChhhhhcCCCCCEEEccCc
Q 006206 230 LQGTL-LEGPIPRSFRALNKLEDLRIGDLS-AEDSTLDFLESQKSLSILSLRNC 281 (657)
Q Consensus 230 l~~n~-l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~Ls~n 281 (657)
+++|. +++..+..+..+++|++|++++|. ........+..+++|++|+|++|
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 77777 555556666666666666666653 11112223444555555555544
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=1.3e-23 Score=221.65 Aligned_cols=251 Identities=18% Similarity=0.186 Sum_probs=159.1
Q ss_pred EEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCC----ccccCCC-CCcEEEeecccCCCCCchhhcCC-----CC
Q 006206 107 DLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVP----TELGNLT-KLISLSFSSNNFFGPLPKELGKL-----TS 176 (657)
Q Consensus 107 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l-----~~ 176 (657)
.++++.|.+++.+|..+...++|++|+|++|.+++..+ ..|.+++ +|++|+|++|.+.+..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35667777776666666666667777777777765444 4555666 66777776666665555544443 56
Q ss_pred CCeeecccccCCCCCchhc----cCC-CCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccC-CCCCC
Q 006206 177 LQQLYIDSSGVTGSIPQEF----ANL-KSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRA-LNKLE 250 (657)
Q Consensus 177 L~~L~Ls~n~l~~~~p~~l----~~l-~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~ 250 (657)
|++|+|++|.+++..+..+ ..+ ++|++|++++|++++..+..+. ..+.. .++|+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~--------------------~~l~~~~~~L~ 141 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK--------------------QAFSNLPASIT 141 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH--------------------HHHTTSCTTCC
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHH--------------------HHHHhCCCcee
Confidence 6666666666554444332 222 4555555555555433322211 11222 24666
Q ss_pred eEEcCCCCCCCCCh----hhhhcCC-CCCEEEccCcccccCCcccc----cCC-CCCcEEeccCCCCCCC----Cchhcc
Q 006206 251 DLRIGDLSAEDSTL----DFLESQK-SLSILSLRNCRVSGKIPDQL----GTF-AKLQLLDLSFNKLTGQ----IPTSLQ 316 (657)
Q Consensus 251 ~L~l~~~~~~~~~~----~~l~~~~-~L~~L~Ls~n~l~~~~p~~l----~~l-~~L~~L~Ls~n~l~~~----~p~~l~ 316 (657)
+|++++|.+..... ..+..++ +|++|+|++|++++..+..+ ..+ ++|++|+|++|++++. ++..+.
T Consensus 142 ~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~ 221 (362)
T 3goz_A 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS 221 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred EEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence 66666665554433 3344555 99999999999998776544 344 5999999999999863 455555
Q ss_pred C-CCCCcEEEccCCcCCCCCCcc-----ccCCCCceEecccccCCCCCCc-------cccC-CCcE-EEeecCCcC
Q 006206 317 D-LSTLQYLYLGNNNLSGELPVN-----IIAPNLIALDVSYNPLSGNLPR-------NFAK-GGLS-MNVIGSSIN 377 (657)
Q Consensus 317 ~-l~~L~~L~L~~N~l~~~~p~~-----~~~~~L~~LdLs~N~l~g~~p~-------~~~~-~~l~-~~l~~n~~~ 377 (657)
. .++|+.|+|++|.+++..+.. ..+++|++|+|++|.+.+..+. .+.. +.++ +++++|++.
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 5 459999999999998654422 1358999999999996644332 2333 4455 789999875
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=2.9e-22 Score=198.53 Aligned_cols=204 Identities=22% Similarity=0.256 Sum_probs=148.2
Q ss_pred ccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCc-CCCCCCccccCCCCCcEEEeec-ccCCCCCchh
Q 006206 93 GELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINN-FTGRVPTELGNLTKLISLSFSS-NNFFGPLPKE 170 (657)
Q Consensus 93 ~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~ 170 (657)
..+|. +. ++|++|++++|.+++..+..|..+++|++|++++|+ ++...+..|.++++|++|++++ |.++...+..
T Consensus 24 ~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 24 QRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp SSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred cccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 35565 32 378999999999886666688889999999999997 7765566788899999999988 8888666677
Q ss_pred hcCCCCCCeeecccccCCCCCchhccCCCCCc---EEEccCC-cCCCCCchhcCCCCccc-EEEccCCCCCCCchhhccC
Q 006206 171 LGKLTSLQQLYIDSSGVTGSIPQEFANLKSLR---ILWASDN-LFTGKIPEFFGTLTELA-DLRLQGTLLEGPIPRSFRA 245 (657)
Q Consensus 171 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~---~L~Ls~n-~l~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~l~~ 245 (657)
|.++++|++|++++|.+++ +|. +..+++|+ +|++++| ++.+..+..+..+++|+ +|++++|.++ .+|..
T Consensus 101 f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~--- 174 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGY--- 174 (239)
T ss_dssp EECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTT---
T ss_pred hCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHh---
Confidence 8888888999998888875 565 77777777 8888888 77765556677777777 7777777666 33322
Q ss_pred CCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcc-cccCCcccccCC-CCCcEEeccCCCCCCCCchhccCCCCCcE
Q 006206 246 LNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCR-VSGKIPDQLGTF-AKLQLLDLSFNKLTGQIPTSLQDLSTLQY 323 (657)
Q Consensus 246 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~-l~~~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 323 (657)
.+.. ++|++|+|++|+ +++..+..+..+ ++|+.|++++|+++ .+|.. .+++|+.
T Consensus 175 --------------------~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~ 230 (239)
T 2xwt_C 175 --------------------AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKE 230 (239)
T ss_dssp --------------------TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSE
T ss_pred --------------------hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCce
Confidence 2222 456666777773 665555666777 77777777777777 34433 5667777
Q ss_pred EEccCC
Q 006206 324 LYLGNN 329 (657)
Q Consensus 324 L~L~~N 329 (657)
|+++++
T Consensus 231 L~l~~~ 236 (239)
T 2xwt_C 231 LIARNT 236 (239)
T ss_dssp EECTTC
T ss_pred eeccCc
Confidence 777765
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=9.8e-22 Score=194.71 Aligned_cols=204 Identities=16% Similarity=0.140 Sum_probs=156.6
Q ss_pred CCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeeccc-CCCCCchhhcCCCCCCeeeccc-ccCCCCCchhc
Q 006206 118 SIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNN-FFGPLPKELGKLTSLQQLYIDS-SGVTGSIPQEF 195 (657)
Q Consensus 118 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l 195 (657)
.+|. +. ++|++|+|++|++++..+..|.++++|++|++++|+ ++...+..|.++++|++|++++ |.+++..+..|
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 4555 33 379999999999987666688899999999999997 7766666788889999999988 88886666778
Q ss_pred cCCCCCcEEEccCCcCCCCCchhcCCCCccc---EEEccCC-CCCCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCC
Q 006206 196 ANLKSLRILWASDNLFTGKIPEFFGTLTELA---DLRLQGT-LLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQK 271 (657)
Q Consensus 196 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~ 271 (657)
..+++|++|++++|++++ +|. +..+++|+ +|++++| .+++ .....+..++
T Consensus 102 ~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~------------------------i~~~~~~~l~ 155 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTS------------------------IPVNAFQGLC 155 (239)
T ss_dssp ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCE------------------------ECTTTTTTTB
T ss_pred CCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhh------------------------cCcccccchh
Confidence 888888888888888875 554 66666665 6666666 5542 2333455667
Q ss_pred CCC-EEEccCcccccCCcccccCCCCCcEEeccCCC-CCCCCchhccCC-CCCcEEEccCCcCCCCCCccccCCCCceEe
Q 006206 272 SLS-ILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNK-LTGQIPTSLQDL-STLQYLYLGNNNLSGELPVNIIAPNLIALD 348 (657)
Q Consensus 272 ~L~-~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~p~~~~~~~L~~Ld 348 (657)
+|+ +|++++|+++ .+|......++|+.|+|++|+ +++..+..|..+ ++|+.|++++|+++ .+|.. .+++|+.|+
T Consensus 156 ~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~-~~~~L~~L~ 232 (239)
T 2xwt_C 156 NETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK-GLEHLKELI 232 (239)
T ss_dssp SSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT-TCTTCSEEE
T ss_pred cceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh-HhccCceee
Confidence 788 8888888888 455443334899999999995 986566778899 99999999999999 56644 688999999
Q ss_pred ccccc
Q 006206 349 VSYNP 353 (657)
Q Consensus 349 Ls~N~ 353 (657)
++++.
T Consensus 233 l~~~~ 237 (239)
T 2xwt_C 233 ARNTW 237 (239)
T ss_dssp CTTC-
T ss_pred ccCcc
Confidence 98874
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=3.4e-21 Score=192.37 Aligned_cols=180 Identities=21% Similarity=0.215 Sum_probs=105.5
Q ss_pred CCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEcc
Q 006206 128 NMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWAS 207 (657)
Q Consensus 128 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 207 (657)
..++++++++.++ .+|..+. ++|+.|+|++|.+.+..+..|.++++|++|+|++|.+++..+..+..+++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3556667666666 4555443 466666666666666555556666666666666666665555555666666666666
Q ss_pred CCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCC
Q 006206 208 DNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKI 287 (657)
Q Consensus 208 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~ 287 (657)
+|++++..+..+..+++|++|++++|.+++.. ...+..+++|++|+|++|++++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------------------------~~~~~~l~~L~~L~Ls~N~l~~~~ 147 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP------------------------SGVFDRLTKLKELRLNTNQLQSIP 147 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC------------------------TTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcC------------------------hhHhccCCcccEEECcCCcCCccC
Confidence 66655444444455555555555555444322 223334455555566666666444
Q ss_pred cccccCCCCCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcCCCC
Q 006206 288 PDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGE 334 (657)
Q Consensus 288 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 334 (657)
+..+..+++|++|+|++|++++..+..+..+++|+.|+|++|++++.
T Consensus 148 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 44566666666666666666655555566666666666666666644
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=5e-21 Score=197.13 Aligned_cols=193 Identities=25% Similarity=0.322 Sum_probs=111.2
Q ss_pred CCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCee
Q 006206 101 MLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQL 180 (657)
Q Consensus 101 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 180 (657)
++++|++|++++|.+.. ++ .+..+++|++|+|++|.+++ ++. +.++++|++|+|++|.+.+. + .+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEE
Confidence 45556666666665552 33 35556666666666666653 222 55566666666666655432 2 35555555555
Q ss_pred ecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCC
Q 006206 181 YIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAE 260 (657)
Q Consensus 181 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~ 260 (657)
++++|.+++. +. +..+++|++|++++|++++..+ +..+++|++|++++|.++
T Consensus 113 ~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~------------------------ 164 (308)
T 1h6u_A 113 DLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS------------------------ 164 (308)
T ss_dssp ECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC------------------------
T ss_pred ECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC------------------------
Confidence 5555555532 22 5555555555555555543322 444444444444444443
Q ss_pred CCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcCCC
Q 006206 261 DSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSG 333 (657)
Q Consensus 261 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 333 (657)
.... +..+++|++|+|++|.+++..+ +..+++|++|+|++|++++.. .+..+++|+.|+|++|++++
T Consensus 165 ~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 165 DLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 3222 4555667777777777764333 667778888888888887443 27778888888888888873
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=4.4e-21 Score=197.57 Aligned_cols=194 Identities=24% Similarity=0.301 Sum_probs=135.1
Q ss_pred CCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcE
Q 006206 124 GQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRI 203 (657)
Q Consensus 124 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 203 (657)
..+++|++|++++|.++ .+| .+..+++|++|+|++|.+.+.. . +..+++|++|+|++|.+++. + .+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLA-P-LKNLTKITELELSGNPLKNV-S-AIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCE
Confidence 34566777777777766 344 4666777777777777666433 2 66666666666666666542 2 4556666666
Q ss_pred EEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCccc
Q 006206 204 LWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRV 283 (657)
Q Consensus 204 L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l 283 (657)
|++++|++.+. +. +..+++|++|++++| .+..... +..+++|++|+|++|.+
T Consensus 112 L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n------------------------~l~~~~~--l~~l~~L~~L~l~~n~l 163 (308)
T 1h6u_A 112 LDLTSTQITDV-TP-LAGLSNLQVLYLDLN------------------------QITNISP--LAGLTNLQYLSIGNAQV 163 (308)
T ss_dssp EECTTSCCCCC-GG-GTTCTTCCEEECCSS------------------------CCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred EECCCCCCCCc-hh-hcCCCCCCEEECCCC------------------------ccCcCcc--ccCCCCccEEEccCCcC
Confidence 66666665532 21 444455555555444 4433322 56778899999999999
Q ss_pred ccCCcccccCCCCCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcCCCCCCccccCCCCceEecccccCCC
Q 006206 284 SGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSG 356 (657)
Q Consensus 284 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~LdLs~N~l~g 356 (657)
++..+ +..+++|+.|++++|++++..+ +..+++|++|+|++|++++..| ...+++|++|+|++|++++
T Consensus 164 ~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 164 SDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEEC
T ss_pred CCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeec
Confidence 85443 8899999999999999985443 8899999999999999996543 4568999999999999985
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=2.1e-20 Score=186.58 Aligned_cols=180 Identities=22% Similarity=0.264 Sum_probs=150.8
Q ss_pred CCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeecc
Q 006206 104 KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYID 183 (657)
Q Consensus 104 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 183 (657)
..++++++++.++ .+|..+. ++|+.|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4678999999998 6776665 689999999999998888899999999999999999998888889999999999999
Q ss_pred cccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCC
Q 006206 184 SSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDST 263 (657)
Q Consensus 184 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 263 (657)
+|++++..+..+..+++|++|+|++|++++..+..+..+++|++|++++|.+++..+..+..+
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l----------------- 154 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL----------------- 154 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-----------------
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcC-----------------
Confidence 999998888889999999999999999998777778889999999999998886555455444
Q ss_pred hhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCC
Q 006206 264 LDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQ 310 (657)
Q Consensus 264 ~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 310 (657)
++|++|+|++|++++..+..+..+++|+.|+|++|.+.+.
T Consensus 155 -------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 155 -------TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp -------TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred -------cCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 4555666666666655556677777778888888877654
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=5.8e-20 Score=192.79 Aligned_cols=239 Identities=19% Similarity=0.174 Sum_probs=152.1
Q ss_pred EEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCC-ccccCCCCCcE-EEeec
Q 006206 83 HLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVP-TELGNLTKLIS-LSFSS 160 (657)
Q Consensus 83 ~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~-L~Ls~ 160 (657)
.++.++++++ .+|..+ .+++++|+|++|.|+...+..|.++++|++|+|++|++.+.+| ..|.++++|++ +.+..
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4666677765 567655 3578999999999884444578889999999999998876555 46788888765 55667
Q ss_pred ccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccC-CcCCCCCchhcCCCC-cccEEEccCCCCCCC
Q 006206 161 NNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASD-NLFTGKIPEFFGTLT-ELADLRLQGTLLEGP 238 (657)
Q Consensus 161 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~ 238 (657)
|++....|..|..+++|++|++++|++....+..+....++..|++.+ +++....+..+..+. .++.|++++|.++.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~- 168 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE- 168 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-
Confidence 888877777888888888888888888866666666666777787765 445433334444443 46677777776663
Q ss_pred chhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccC-cccccCCcccccCCCCCcEEeccCCCCCCCCchhccC
Q 006206 239 IPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRN-CRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQD 317 (657)
Q Consensus 239 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 317 (657)
++....... +|++|++++ |.++...+..|..+++|+.|+|++|+|+ .+|. ..
T Consensus 169 i~~~~f~~~------------------------~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~--~~ 221 (350)
T 4ay9_X 169 IHNSAFNGT------------------------QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS--YG 221 (350)
T ss_dssp ECTTSSTTE------------------------EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCS--SS
T ss_pred CChhhcccc------------------------chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccCh--hh
Confidence 333322333 445555543 3343222234566666666666666666 3343 12
Q ss_pred CCCCcEEEccCCcCCCCCCccccCCCCceEecccc
Q 006206 318 LSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYN 352 (657)
Q Consensus 318 l~~L~~L~L~~N~l~~~~p~~~~~~~L~~LdLs~N 352 (657)
+.+|+.|.+.++.-...+|....+++|+.++++++
T Consensus 222 ~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 222 LENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP 256 (350)
T ss_dssp CTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred hccchHhhhccCCCcCcCCCchhCcChhhCcCCCC
Confidence 44555555555444445664445666666666654
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1e-19 Score=190.89 Aligned_cols=235 Identities=17% Similarity=0.153 Sum_probs=169.2
Q ss_pred CEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCc-hhhcCCCCCCe-eecc
Q 006206 106 MDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLP-KELGKLTSLQQ-LYID 183 (657)
Q Consensus 106 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~-L~Ls 183 (657)
++++.+++.++ .+|..+ .++|++|+|++|+|+...+..|.++++|++|+|++|++.+.+| ..|.++++|++ +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 46777888887 677765 3579999999999985545678999999999999998876555 45778888765 5566
Q ss_pred cccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCC-CCCCCchhhccCCCCCCeEEcCCCCCCCC
Q 006206 184 SSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGT-LLEGPIPRSFRALNKLEDLRIGDLSAEDS 262 (657)
Q Consensus 184 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 262 (657)
.|+++...|..|..+++|++|++++|++....+..+....++..|++.++ .+. .++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~---------------------- 145 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIE---------------------- 145 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EEC----------------------
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-ccc----------------------
Confidence 78888777788888888888888888888666555666666777776543 222 221
Q ss_pred ChhhhhcC-CCCCEEEccCcccccCCcccccCCCCCcEEeccC-CCCCCCCc-hhccCCCCCcEEEccCCcCCCCCCccc
Q 006206 263 TLDFLESQ-KSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSF-NKLTGQIP-TSLQDLSTLQYLYLGNNNLSGELPVNI 339 (657)
Q Consensus 263 ~~~~l~~~-~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~~ 339 (657)
...+..+ ..++.|+|++|+++. +|.......+|+.|++++ |.++ .+| ..|..+++|+.|+|++|+|+ .+|. .
T Consensus 146 -~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~-~lp~-~ 220 (350)
T 4ay9_X 146 -RNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPS-Y 220 (350)
T ss_dssp -TTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC-CCCS-S
T ss_pred -ccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC-ccCh-h
Confidence 1122222 357889999999984 555445567899999986 5666 555 56899999999999999999 6774 3
Q ss_pred cCCCCceEecccccCCCCCCccccC-CCcE-EEee
Q 006206 340 IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVI 372 (657)
Q Consensus 340 ~~~~L~~LdLs~N~l~g~~p~~~~~-~~l~-~~l~ 372 (657)
.+.+|+.|.+.++.--..+| .+.. ..|+ +++.
T Consensus 221 ~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 221 GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLT 254 (350)
T ss_dssp SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECS
T ss_pred hhccchHhhhccCCCcCcCC-CchhCcChhhCcCC
Confidence 46788888877766445677 3444 5555 4443
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.1e-19 Score=175.98 Aligned_cols=180 Identities=21% Similarity=0.247 Sum_probs=109.9
Q ss_pred EEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeeccc
Q 006206 83 HLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNN 162 (657)
Q Consensus 83 ~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 162 (657)
.++..++.+. .+|..+ .++|++|++++|.+++..+..+..+++|++|+|++|++++..+..|.++++|++|+|++|.
T Consensus 11 ~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 3444444443 334332 3577788888887775555567777777777777777775555556777777777777777
Q ss_pred CCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhh
Q 006206 163 FFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRS 242 (657)
Q Consensus 163 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 242 (657)
+++..+..+.++++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----- 162 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----- 162 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-----
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-----
Confidence 765555556666677777777666665555555666666666666666654444444555555555555543321
Q ss_pred ccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCC
Q 006206 243 FRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAK 296 (657)
Q Consensus 243 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~ 296 (657)
.+++|+.|+++.|.++|.+|..++.++.
T Consensus 163 --------------------------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 --------------------------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp --------------------------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred --------------------------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 2245566666666777777766655443
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.5e-19 Score=174.81 Aligned_cols=181 Identities=23% Similarity=0.246 Sum_probs=100.1
Q ss_pred CEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeecccc
Q 006206 106 MDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSS 185 (657)
Q Consensus 106 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 185 (657)
+.++.+++.++ .+|..+ .++|++|+|++|++++..+..|.++++|++|++++|++.+..+..|..+++|++|+|++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 35566666655 344333 346666666666666544445566666666666666666444444555666666666666
Q ss_pred cCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCChh
Q 006206 186 GVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLD 265 (657)
Q Consensus 186 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 265 (657)
++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++ ....
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~------------------------~~~~ 142 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS------------------------VPDG 142 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC------------------------CCTT
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce------------------------eCHH
Confidence 6654444445555555555555555554444444444444444444444432 2222
Q ss_pred hhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCCCC
Q 006206 266 FLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLST 320 (657)
Q Consensus 266 ~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 320 (657)
.+..+++|++|+|++|.+. +.+++|+.|+++.|+++|.+|..++.++.
T Consensus 143 ~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 143 VFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred HhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 3344455556666666544 23456677777777777777766655443
No 96
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=1.7e-21 Score=219.43 Aligned_cols=296 Identities=15% Similarity=0.149 Sum_probs=153.5
Q ss_pred ceeEEEEecCC-CC-ccCChhccCCCCCCEEEccCCCCCCC----CchhcCCCCCCCeeEcccCcCCC----CCCccccC
Q 006206 80 HITHLKIYALD-IM-GELPSELFMLRKLMDLNLGQNVLNGS----IPAEIGQLSNMQYLSLGINNFTG----RVPTELGN 149 (657)
Q Consensus 80 ~v~~L~l~~~~-l~-~~lp~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~ 149 (657)
++++|+++++. +. ..++.....+++|++|+|++|.+++. ++..+..+++|++|+|++|.+++ .++..+.+
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~ 218 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence 38888887765 11 11223334677888888888876554 33445567777888887777762 33344456
Q ss_pred CCCCcEEEeecccCCCCCchhhcCCCCCCeeecccccC--------------------------CCCCchhccCCCCCcE
Q 006206 150 LTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGV--------------------------TGSIPQEFANLKSLRI 203 (657)
Q Consensus 150 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l--------------------------~~~~p~~l~~l~~L~~ 203 (657)
+++|++|++++|.+.+ +|..+.++++|++|+++.... ...+|..+..+++|++
T Consensus 219 ~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 219 CRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRK 297 (592)
T ss_dssp CTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCE
T ss_pred CCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcE
Confidence 7777777777776653 455566666666666653221 1233444444555555
Q ss_pred EEccCCcCCCCCc-hhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCC-----------CCCCCCCh-hhhhcC
Q 006206 204 LWASDNLFTGKIP-EFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGD-----------LSAEDSTL-DFLESQ 270 (657)
Q Consensus 204 L~Ls~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-----------~~~~~~~~-~~l~~~ 270 (657)
|++++|.+++... ..+..+++|++|++.++...+.++.....+++|++|++++ +.+..... .....+
T Consensus 298 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (592)
T 3ogk_B 298 LDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC 377 (592)
T ss_dssp EEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC
T ss_pred EecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC
Confidence 5555555432211 2234555555555552211222333334455666666652 22221111 112345
Q ss_pred CCCCEEEccCcccccCCcccccC-CCCCcEEecc----CCCCCCC-----CchhccCCCCCcEEEccCCc--CCCCCCcc
Q 006206 271 KSLSILSLRNCRVSGKIPDQLGT-FAKLQLLDLS----FNKLTGQ-----IPTSLQDLSTLQYLYLGNNN--LSGELPVN 338 (657)
Q Consensus 271 ~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls----~n~l~~~-----~p~~l~~l~~L~~L~L~~N~--l~~~~p~~ 338 (657)
++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++. ++..+..+++|+.|+|++|. +++..+..
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 66666666666665554444443 5666666664 4455532 22334445666666665432 43322221
Q ss_pred c--cCCCCceEecccccCCCCCCccc-cC-CCcE-EEeecCCc
Q 006206 339 I--IAPNLIALDVSYNPLSGNLPRNF-AK-GGLS-MNVIGSSI 376 (657)
Q Consensus 339 ~--~~~~L~~LdLs~N~l~g~~p~~~-~~-~~l~-~~l~~n~~ 376 (657)
+ .+++|++|+|++|++++.....+ .. +.|+ +++++|++
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 500 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC
T ss_pred HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC
Confidence 1 24566666666666654221122 22 3343 56666654
No 97
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=1.9e-21 Score=218.95 Aligned_cols=298 Identities=14% Similarity=0.071 Sum_probs=200.4
Q ss_pred CceeEEEEecCCCCcc----CChhccCCCCCCEEEccCCCCCC----CCchhcCCCCCCCeeEcccCcCCCCCCccccCC
Q 006206 79 CHITHLKIYALDIMGE----LPSELFMLRKLMDLNLGQNVLNG----SIPAEIGQLSNMQYLSLGINNFTGRVPTELGNL 150 (657)
Q Consensus 79 ~~v~~L~l~~~~l~~~----lp~~l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 150 (657)
.++++|+++++.+.+. ++..+..+++|++|++++|.+++ .++..+.++++|++|+|++|.+.+ +|..+.++
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~ 242 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAA 242 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHC
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhh
Confidence 4677777777766544 33445566777777777777652 233444566777777777776653 44444444
Q ss_pred CCCcEEEe---------------------------ecccCCCCCchhhcCCCCCCeeecccccCCCCCc-hhccCCCCCc
Q 006206 151 TKLISLSF---------------------------SSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIP-QEFANLKSLR 202 (657)
Q Consensus 151 ~~L~~L~L---------------------------s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~ 202 (657)
++|++|++ +++. ...+|..+..+++|++|+|++|.++.... ..+..+++|+
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 55555554 4432 23456667778899999999999764433 4468899999
Q ss_pred EEEccCCcCCCCCchhcCCCCcccEEEccC-----------CCCCCC-chhhccCCCCCCeEEcCCCCCCCCChhhhhc-
Q 006206 203 ILWASDNLFTGKIPEFFGTLTELADLRLQG-----------TLLEGP-IPRSFRALNKLEDLRIGDLSAEDSTLDFLES- 269 (657)
Q Consensus 203 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~-----------n~l~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~- 269 (657)
+|+++++...+.++.....+++|++|++++ |.+++. ++.....+++|++|+++.+.+.......+..
T Consensus 322 ~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 401 (592)
T 3ogk_B 322 VLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTY 401 (592)
T ss_dssp EEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHH
T ss_pred EEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhh
Confidence 999994432333444556788999999993 555533 3334556899999999777776655555554
Q ss_pred CCCCCEEEcc----CcccccC-----CcccccCCCCCcEEeccCCC--CCCCCchhcc-CCCCCcEEEccCCcCCCC-CC
Q 006206 270 QKSLSILSLR----NCRVSGK-----IPDQLGTFAKLQLLDLSFNK--LTGQIPTSLQ-DLSTLQYLYLGNNNLSGE-LP 336 (657)
Q Consensus 270 ~~~L~~L~Ls----~n~l~~~-----~p~~l~~l~~L~~L~Ls~n~--l~~~~p~~l~-~l~~L~~L~L~~N~l~~~-~p 336 (657)
+++|++|+|+ .|.+++. ++..+..+++|+.|++++|. +++..+..+. .+++|+.|+|++|.+++. ++
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 481 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM 481 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH
Confidence 8899999996 5677753 33446678999999998654 6655555444 488999999999998863 33
Q ss_pred ccc-cCCCCceEecccccCCCCCCcccc-C-CCcE-EEeecCCcCC
Q 006206 337 VNI-IAPNLIALDVSYNPLSGNLPRNFA-K-GGLS-MNVIGSSINA 378 (657)
Q Consensus 337 ~~~-~~~~L~~LdLs~N~l~g~~p~~~~-~-~~l~-~~l~~n~~~~ 378 (657)
... .+++|++|+|++|++++.....+. . +.|+ +++++|+++.
T Consensus 482 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 482 EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred HHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 222 468999999999998755333333 2 5555 8999998763
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=2.6e-19 Score=198.17 Aligned_cols=216 Identities=24% Similarity=0.348 Sum_probs=152.2
Q ss_pred CCCCCCCCCCCC-CCCCCCCCCCCe-eeecCCCCCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcC
Q 006206 47 INLTTIDPCTRN-ASWASENANPRV-ACDCTSNSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIG 124 (657)
Q Consensus 47 w~~~~~d~C~~~-~~W~~~~~~~~v-~C~~~~~~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 124 (657)
|... .+||... ..| .++ .|.+. +++.|+++++++.+ +|..+ +++|++|+|++|.++ .+| .
T Consensus 36 W~~~-~~~~~~~~~~~------~~l~~C~~~----~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~ 97 (571)
T 3cvr_A 36 WEKQ-ALPGENRNEAV------SLLKECLIN----QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---E 97 (571)
T ss_dssp HHTT-CCTTCCHHHHH------HHHHHHHHT----TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---C
T ss_pred Hhcc-CCccccccchh------hhccccccC----CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---c
Confidence 5444 6788521 135 466 67642 68899999998876 77765 378999999999988 677 4
Q ss_pred CCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEE
Q 006206 125 QLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRIL 204 (657)
Q Consensus 125 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 204 (657)
.+++|++|+|++|.+++ +|. +.+ +|++|+|++|++++ +|. .+++|++|+|++|.+++ +|. .+++|++|
T Consensus 98 ~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L 165 (571)
T 3cvr_A 98 LPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVL 165 (571)
T ss_dssp CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEE
T ss_pred ccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEE
Confidence 57889999999998886 676 655 88899999888876 555 57888888888888875 555 56788888
Q ss_pred EccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccc
Q 006206 205 WASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVS 284 (657)
Q Consensus 205 ~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~ 284 (657)
+|++|++++ +|. +. ++|+.|++++|.++ .+|. +.. +| ....+.|+.|+|++|.++
T Consensus 166 ~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L-----------------~~~~~~L~~L~Ls~N~l~ 220 (571)
T 3cvr_A 166 SVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RN-----------------HHSEETEIFFRCRENRIT 220 (571)
T ss_dssp ECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC---------------------------CCEEEECCSSCCC
T ss_pred ECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hh-----------------hcccccceEEecCCCcce
Confidence 888888875 555 44 77888888887776 4443 221 11 111234577777777777
Q ss_pred cCCcccccCCCCCcEEeccCCCCCCCCchhccCC
Q 006206 285 GKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDL 318 (657)
Q Consensus 285 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 318 (657)
.+|..+..+++|+.|+|++|++++.+|..+..+
T Consensus 221 -~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 221 -HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp -CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred -ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 566666667777777777777777777666553
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=8.4e-19 Score=194.07 Aligned_cols=182 Identities=24% Similarity=0.353 Sum_probs=88.8
Q ss_pred CCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeecc
Q 006206 104 KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYID 183 (657)
Q Consensus 104 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 183 (657)
+|+.|+|++|.+++ +|..+. ++|++|+|++|.++ .+| ..+++|++|+|++|++++ +|. +.+ +|++|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 45555555555543 443331 44555555555554 344 234455555555555543 333 332 44555555
Q ss_pred cccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCC
Q 006206 184 SSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDST 263 (657)
Q Consensus 184 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 263 (657)
+|.+++ +|. .+++|+.|+|++|++++ +|. .+++|++|++++|.+++ +|.
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~---------------------- 177 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE---------------------- 177 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----------------------
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch----------------------
Confidence 554443 333 34444444444444443 222 23334444444443332 221
Q ss_pred hhhhhcCCCCCEEEccCcccccCCcccccCCCCC-------cEEeccCCCCCCCCchhccCCCCCcEEEccCCcCCCCCC
Q 006206 264 LDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKL-------QLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELP 336 (657)
Q Consensus 264 ~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L-------~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 336 (657)
+. ++|++|+|++|.++ .+|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|
T Consensus 178 ---l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 178 ---LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp ---CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred ---hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 11 45556666666665 4444 332 44 67777777776 466666666677777777777666555
Q ss_pred c
Q 006206 337 V 337 (657)
Q Consensus 337 ~ 337 (657)
.
T Consensus 248 ~ 248 (571)
T 3cvr_A 248 E 248 (571)
T ss_dssp H
T ss_pred H
Confidence 4
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=1.6e-18 Score=193.81 Aligned_cols=171 Identities=25% Similarity=0.329 Sum_probs=86.6
Q ss_pred cCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCe
Q 006206 100 FMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQ 179 (657)
Q Consensus 100 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 179 (657)
..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+++..| +..+++|+.|+|++|.+.+ +| .+..+++|++
T Consensus 40 ~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCE
Confidence 445556666666665542 22 35555666666666666554322 5556666666666665543 22 4555555555
Q ss_pred eecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCC
Q 006206 180 LYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSA 259 (657)
Q Consensus 180 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~ 259 (657)
|+|++|.+.+. ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.+
T Consensus 114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 55555555532 2355555555555555555533 344455555555555555554433 44444444444444444
Q ss_pred CCCChhhhhcCCCCCEEEccCcccc
Q 006206 260 EDSTLDFLESQKSLSILSLRNCRVS 284 (657)
Q Consensus 260 ~~~~~~~l~~~~~L~~L~Ls~n~l~ 284 (657)
... ..+..+++|+.|+|++|.+.
T Consensus 188 ~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 188 SDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CBC--GGGTTCTTCSEEECCSEEEE
T ss_pred CCC--hHHccCCCCCEEEccCCcCc
Confidence 332 22344444444444444443
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=9.1e-18 Score=164.90 Aligned_cols=144 Identities=21% Similarity=0.259 Sum_probs=123.6
Q ss_pred ccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhc
Q 006206 93 GELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELG 172 (657)
Q Consensus 93 ~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~ 172 (657)
+.+|..+. ++|++|+|++|.+++..|..|..+++|++|+|++|+++...+..|.++++|++|+|++|++++..+..|.
T Consensus 32 ~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 109 (229)
T 3e6j_A 32 ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD 109 (229)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhC
Confidence 35555443 7899999999999988888899999999999999999866666788999999999999999877777788
Q ss_pred CCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCc
Q 006206 173 KLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPI 239 (657)
Q Consensus 173 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 239 (657)
.+++|++|+|++|+++ .+|..+..+++|++|+|++|++.+..+..+..+++|+.|++.+|.+....
T Consensus 110 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 110 RLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp TCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred cchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 9999999999999998 67888899999999999999998777777888899999999998887554
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=4.8e-18 Score=165.77 Aligned_cols=156 Identities=21% Similarity=0.226 Sum_probs=132.9
Q ss_pred eEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCc-hhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeec
Q 006206 82 THLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIP-AEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSS 160 (657)
Q Consensus 82 ~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 160 (657)
+.++++++.+. .+|..+. +.+++|+|++|.+++..+ ..|..+++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 47888888875 4676553 457899999999986644 4588999999999999999977777899999999999999
Q ss_pred ccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCch
Q 006206 161 NNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIP 240 (657)
Q Consensus 161 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 240 (657)
|++++..+..|..+++|++|+|++|.+++..|..+..+++|++|+|++|++++..|..+..+++|++|++++|.+....+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 99988888889999999999999999998888889999999999999999998888888889999999999998875543
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=4.1e-18 Score=190.52 Aligned_cols=173 Identities=24% Similarity=0.326 Sum_probs=134.1
Q ss_pred CCCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEE
Q 006206 77 NSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISL 156 (657)
Q Consensus 77 ~~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 156 (657)
...+++.|+++++.+.. ++ .+..+++|+.|+|++|.+++..+ +..+++|+.|+|++|.+++ +| .+..+++|++|
T Consensus 41 ~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSL 114 (605)
T ss_dssp HHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEE
T ss_pred cCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEE
Confidence 34567888888887754 33 47888888888888888875444 7888888888888888874 33 67888888888
Q ss_pred EeecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCC
Q 006206 157 SFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLE 236 (657)
Q Consensus 157 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 236 (657)
+|++|.+.+. +.+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.++
T Consensus 115 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 115 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp ECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 8888888753 3577888888888888888764 567888888888888888886655 788888888888888887
Q ss_pred CCchhhccCCCCCCeEEcCCCCCCCCC
Q 006206 237 GPIPRSFRALNKLEDLRIGDLSAEDST 263 (657)
Q Consensus 237 ~~~~~~l~~l~~L~~L~l~~~~~~~~~ 263 (657)
+. + .+..+++|+.|+|++|.+...+
T Consensus 189 ~l-~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 189 DL-R-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp BC-G-GGTTCTTCSEEECCSEEEECCC
T ss_pred CC-h-HHccCCCCCEEEccCCcCcCCc
Confidence 54 3 5788888888888888765543
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=3.2e-18 Score=174.53 Aligned_cols=171 Identities=24% Similarity=0.313 Sum_probs=91.3
Q ss_pred CCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCee
Q 006206 101 MLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQL 180 (657)
Q Consensus 101 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 180 (657)
.+++|++|++++|.+.. ++ .+..+++|++|+|++|++++..+ +.++++|++|++++|.+.+ ++ .+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred hcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEE
Confidence 44555566666555542 22 25555556666666555553222 5555555555555555543 22 25555555555
Q ss_pred ecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCC
Q 006206 181 YIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAE 260 (657)
Q Consensus 181 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~ 260 (657)
++++|.+++. ..+..+++|++|++++|++++. .. +..+++|+.|++++|.+.
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~------------------------l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TV------------------------LSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GG------------------------GGGCTTCSEEECCSSCCC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hh------------------------hccCCCCCEEEccCCccc
Confidence 5555555432 2344555555555555555432 23 444444444444444444
Q ss_pred CCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCC
Q 006206 261 DSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTG 309 (657)
Q Consensus 261 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 309 (657)
...+ +..+++|++|+|++|.+++ ++ .+..+++|+.|++++|+++.
T Consensus 170 ~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 170 DIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred cchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 3322 4555666666666666663 33 36677777777777777764
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=5e-18 Score=173.17 Aligned_cols=171 Identities=24% Similarity=0.323 Sum_probs=88.6
Q ss_pred CCCCCcEEEeecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEE
Q 006206 149 NLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADL 228 (657)
Q Consensus 149 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 228 (657)
.+++|++|++++|.+... + .+..+++|++|++++|++++..+ +..+++|++|++++|.+.+ ++ .+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEE
Confidence 344444444444444322 2 24444445555555544443222 4445555555555555442 11 24444455555
Q ss_pred EccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCC
Q 006206 229 RLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLT 308 (657)
Q Consensus 229 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 308 (657)
++++|.+++. ..+..+++|++|+|++|.+++. ..+..+++|+.|++++|+++
T Consensus 118 ~L~~n~i~~~--------------------------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 118 SLEHNGISDI--------------------------NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp ECTTSCCCCC--------------------------GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred ECCCCcCCCC--------------------------hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence 5555444421 1233344555555555555532 34556666666666666666
Q ss_pred CCCchhccCCCCCcEEEccCCcCCCCCCccccCCCCceEecccccCCC
Q 006206 309 GQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSG 356 (657)
Q Consensus 309 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~LdLs~N~l~g 356 (657)
+..| +..+++|+.|+|++|.+++ +|....+++|+.|++++|+++.
T Consensus 170 ~~~~--l~~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 170 DIVP--LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEEEEEEEEC
T ss_pred cchh--hcCCCccCEEECCCCcCCC-ChhhccCCCCCEEECcCCcccC
Confidence 4333 6666777777777777663 4433346777777777777764
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=5.2e-18 Score=165.54 Aligned_cols=153 Identities=19% Similarity=0.255 Sum_probs=126.9
Q ss_pred eEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecc
Q 006206 82 THLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSN 161 (657)
Q Consensus 82 ~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n 161 (657)
+.++++++++. .+|..+. ++|++|+|++|.+++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45777777664 4565544 68999999999998666678889999999999999999888888999999999999999
Q ss_pred cCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCC
Q 006206 162 NFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEG 237 (657)
Q Consensus 162 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 237 (657)
.++...+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..+..+++|++|++++|.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 9986666667888999999999999988888888888899999999998887777778888888888888887753
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=5.4e-18 Score=178.53 Aligned_cols=163 Identities=20% Similarity=0.171 Sum_probs=118.5
Q ss_pred eEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcC-CCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeec
Q 006206 82 THLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIG-QLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSS 160 (657)
Q Consensus 82 ~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 160 (657)
+.++++++++. .+|..+. +.++.|+|++|.+++..+..+. .+++|++|+|++|++++..+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 46777777765 4565443 4578889988888866666676 888888888888888877677788888888888888
Q ss_pred ccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhc---CCCCcccEEEccCCCCCC
Q 006206 161 NNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFF---GTLTELADLRLQGTLLEG 237 (657)
Q Consensus 161 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l---~~l~~L~~L~l~~n~l~~ 237 (657)
|++....+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+ ..+++|+.|+|++|.++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 88877666678888888888888888887777778888888888888888875444444 446666666666666664
Q ss_pred CchhhccCCC
Q 006206 238 PIPRSFRALN 247 (657)
Q Consensus 238 ~~~~~l~~l~ 247 (657)
..+..+..++
T Consensus 178 l~~~~~~~l~ 187 (361)
T 2xot_A 178 LPLTDLQKLP 187 (361)
T ss_dssp CCHHHHHHSC
T ss_pred cCHHHhhhcc
Confidence 4444444443
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=1.8e-17 Score=161.64 Aligned_cols=151 Identities=20% Similarity=0.228 Sum_probs=126.0
Q ss_pred CEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeecccc
Q 006206 106 MDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSS 185 (657)
Q Consensus 106 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 185 (657)
+.++++++.++ .+|..+. ++|+.|+|++|++++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 57888888887 5676554 68999999999999777778899999999999999998888888999999999999999
Q ss_pred cCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCC
Q 006206 186 GVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSA 259 (657)
Q Consensus 186 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~ 259 (657)
.++...+..|..+++|++|+|++|++.+..+..+..+++|++|+|++|.+++..+..+..+++|+.|++++|.+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 99866666678899999999999999888888888888888888888888877766677777777777766654
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=1.1e-17 Score=176.11 Aligned_cols=179 Identities=20% Similarity=0.150 Sum_probs=130.5
Q ss_pred CEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCcccc-CCCCCcEEEeecccCCCCCchhhcCCCCCCeeeccc
Q 006206 106 MDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELG-NLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDS 184 (657)
Q Consensus 106 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 184 (657)
+.++++++.++ .+|..+. +.|+.|+|++|++++..+..|. ++++|++|+|++|++++..+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 57889998887 5776554 4588999999999877777777 899999999999999877777888889999999999
Q ss_pred ccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCCh
Q 006206 185 SGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTL 264 (657)
Q Consensus 185 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 264 (657)
|+++...+..|..+++|++|+|++|++.+..+..+..+++|++|+|++|.+++..+..+..
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~------------------- 158 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD------------------- 158 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC--------------------
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcC-------------------
Confidence 9888766777888888888888888888777777888888888888888777543333311
Q ss_pred hhhhcCCCCCEEEccCcccccCCcccccCCCC--CcEEeccCCCCC
Q 006206 265 DFLESQKSLSILSLRNCRVSGKIPDQLGTFAK--LQLLDLSFNKLT 308 (657)
Q Consensus 265 ~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~--L~~L~Ls~n~l~ 308 (657)
+..+++|++|+|++|++++..+..+..++. |+.|+|++|.+.
T Consensus 159 --~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 159 --GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp -----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred --cccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 023455555555555555443344554554 356677776665
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=2.3e-17 Score=160.94 Aligned_cols=152 Identities=21% Similarity=0.238 Sum_probs=125.4
Q ss_pred CEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCC-ccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeeccc
Q 006206 106 MDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVP-TELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDS 184 (657)
Q Consensus 106 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 184 (657)
+.+++++|.++ .+|..+. +.+++|+|++|++++..| ..|.++++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 48899999987 5776553 457899999999986644 4578899999999999999877777888999999999999
Q ss_pred ccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCC
Q 006206 185 SGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAE 260 (657)
Q Consensus 185 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~ 260 (657)
|.+++..+..|..+++|++|+|++|++++..|..+..+++|++|++++|.+++..|..|..+++|+.|++++|.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 9998877888888999999999999998888888888888888888888888777777777777777777766543
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=6.9e-17 Score=158.60 Aligned_cols=150 Identities=25% Similarity=0.233 Sum_probs=120.7
Q ss_pred EEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeeccccc
Q 006206 107 DLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSG 186 (657)
Q Consensus 107 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 186 (657)
.++.+++.++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++....+..|..+++|++|+|++|+
T Consensus 23 ~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 23 TVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 3445555555 5665443 789999999999998888889999999999999999986666678889999999999999
Q ss_pred CCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCC
Q 006206 187 VTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAE 260 (657)
Q Consensus 187 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~ 260 (657)
+++..+..+..+++|++|+|++|++. .+|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 98777777888999999999999988 67777888888888888888888666666777777777777666544
No 112
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.72 E-value=1.9e-19 Score=202.66 Aligned_cols=127 Identities=13% Similarity=0.100 Sum_probs=79.4
Q ss_pred CCceeEEEEecCCCCccCChhcc-CCCCCCEEEccCC-CCCCC-CchhcCCCCCCCeeEcccCcCCCCCCccc----cCC
Q 006206 78 SCHITHLKIYALDIMGELPSELF-MLRKLMDLNLGQN-VLNGS-IPAEIGQLSNMQYLSLGINNFTGRVPTEL----GNL 150 (657)
Q Consensus 78 ~~~v~~L~l~~~~l~~~lp~~l~-~l~~L~~L~Ls~n-~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~----~~l 150 (657)
..++++|+++++.+.+..+..+. .+++|++|+|++| .++.. ++..+..+++|++|+|++|.+++..+..+ ..+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 34788899988888776666665 5888888888888 44432 44445578888888888888765443333 366
Q ss_pred CCCcEEEeecccCCCCCchh----hcCCCCCCeeecccccCCCCCchhccCCCCCcEEE
Q 006206 151 TKLISLSFSSNNFFGPLPKE----LGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILW 205 (657)
Q Consensus 151 ~~L~~L~Ls~n~l~~~~p~~----l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 205 (657)
++|++|++++|. ....... +..+++|++|++++|...+.++..+..+++|++|+
T Consensus 184 ~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~ 241 (594)
T 2p1m_B 184 TSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELG 241 (594)
T ss_dssp CCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEE
T ss_pred CcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcc
Confidence 788888888776 1111122 23457788888877622112333333444444444
No 113
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.72 E-value=1.7e-19 Score=202.97 Aligned_cols=297 Identities=13% Similarity=0.091 Sum_probs=175.8
Q ss_pred CCceeEEEEecC-CCCcc-CChhccCCCCCCEEEccCCCCCCCCchhc----CCCCCCCeeEcccCc--CCC-CCCcccc
Q 006206 78 SCHITHLKIYAL-DIMGE-LPSELFMLRKLMDLNLGQNVLNGSIPAEI----GQLSNMQYLSLGINN--FTG-RVPTELG 148 (657)
Q Consensus 78 ~~~v~~L~l~~~-~l~~~-lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l----~~l~~L~~L~Ls~n~--l~~-~~p~~~~ 148 (657)
..++++|++.++ .+... ++..+..+++|++|+|++|.+++..+..+ ..+++|++|+|++|. ++. .++..+.
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence 458999999988 44332 45555689999999999998876554444 367799999999887 221 1112234
Q ss_pred CCCCCcEEEeecccCCCCCchhhcCCCCCCeeeccccc--------------------------CC----CCCchhccCC
Q 006206 149 NLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSG--------------------------VT----GSIPQEFANL 198 (657)
Q Consensus 149 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~--------------------------l~----~~~p~~l~~l 198 (657)
++++|++|+|++|...+.++..+..+++|++|+++.+. +. ..++..+..+
T Consensus 209 ~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~ 288 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVC 288 (594)
T ss_dssp HCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHH
T ss_pred hCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhh
Confidence 57899999999883322355566667777777654432 11 1233333456
Q ss_pred CCCcEEEccCCcCCCC-CchhcCCCCcccEEEccCCCCC-CCchhhccCCCCCCeEEcCCC---------CCCCCChhhh
Q 006206 199 KSLRILWASDNLFTGK-IPEFFGTLTELADLRLQGTLLE-GPIPRSFRALNKLEDLRIGDL---------SAEDSTLDFL 267 (657)
Q Consensus 199 ~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~~---------~~~~~~~~~l 267 (657)
++|++|++++|.+++. +...+..+++|++|++.+| +. ..++.....+++|++|++.++ .+.......+
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l 367 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence 8888888888886533 2233567888888888877 33 223333345778888887432 2222122222
Q ss_pred -hcCCCCCEEEccCcccccCCccccc-CCCCCcEEecc--C----CCCCCC-----CchhccCCCCCcEEEccCCcCCCC
Q 006206 268 -ESQKSLSILSLRNCRVSGKIPDQLG-TFAKLQLLDLS--F----NKLTGQ-----IPTSLQDLSTLQYLYLGNNNLSGE 334 (657)
Q Consensus 268 -~~~~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls--~----n~l~~~-----~p~~l~~l~~L~~L~L~~N~l~~~ 334 (657)
..+++|++|.+..|.+++..+..+. .+++|+.|+++ + +.+++. ++..+..+++|+.|+|++ .+++.
T Consensus 368 ~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~ 446 (594)
T 2p1m_B 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK 446 (594)
T ss_dssp HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence 2467777777777776655444443 46777777777 3 444421 112244566667777655 44432
Q ss_pred CCccc--cCCCCceEecccccCCCCCCccccC--CCcE-EEeecCCc
Q 006206 335 LPVNI--IAPNLIALDVSYNPLSGNLPRNFAK--GGLS-MNVIGSSI 376 (657)
Q Consensus 335 ~p~~~--~~~~L~~LdLs~N~l~g~~p~~~~~--~~l~-~~l~~n~~ 376 (657)
.+..+ .+++|++|+|++|.+++..+..+.. +.|+ +++++|.+
T Consensus 447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred HHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 22222 1566666666666665443333311 3343 56666665
No 114
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=1.4e-18 Score=198.99 Aligned_cols=194 Identities=20% Similarity=0.222 Sum_probs=77.7
Q ss_pred CCHHHHHHHHHHHHhcCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCeeeecCCCCCceeEEEEecCCCCccCChhcc
Q 006206 26 TDSAEVDALNKLIDYWNL-----RSKINLTTIDPCTRNASWASENANPRVACDCTSNSCHITHLKIYALDIMGELPSELF 100 (657)
Q Consensus 26 ~~~~e~~aL~~~~~~~~~-----~~~w~~~~~d~C~~~~~W~~~~~~~~v~C~~~~~~~~v~~L~l~~~~l~~~lp~~l~ 100 (657)
..+.+.++|..++..... ...|... ..++. .| .+..+. .++++.|+|..+++.. .+..+
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~------~~~~~s----~~~~~~l~L~~n~~~~-~~~~~- 192 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGD-STPSG---TA------TNSAVS----TPLTPKIELFANGKDE-ANQAL- 192 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCC-CCccc---cC------CCceec----CCccceEEeeCCCCCc-chhhH-
Confidence 344567788887765432 2334322 12221 24 333332 3578889988877754 23332
Q ss_pred CCCCCCEEEccCCCCCC---------CCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhh
Q 006206 101 MLRKLMDLNLGQNVLNG---------SIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKEL 171 (657)
Q Consensus 101 ~l~~L~~L~Ls~n~l~~---------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l 171 (657)
|+.++|+.|.+.+ ..+..+..+++|+.|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..|
T Consensus 193 ----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~ 266 (727)
T 4b8c_D 193 ----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEI 266 (727)
T ss_dssp ---------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGG
T ss_pred ----hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhh
Confidence 3334444433321 33455556666666666666665 45555556666666666666665 555556
Q ss_pred cCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhc
Q 006206 172 GKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSF 243 (657)
Q Consensus 172 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 243 (657)
+++++|++|+|++|.++ .+|..+..|++|++|+|++|.++ .+|..|..+++|++|+|++|.+++.+|..+
T Consensus 267 ~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 267 KNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp GGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred hCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 66666666666666665 45555666666666666666554 445555555556666666555555555444
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=6e-17 Score=155.10 Aligned_cols=150 Identities=16% Similarity=0.179 Sum_probs=87.5
Q ss_pred ceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEee
Q 006206 80 HITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 159 (657)
Q Consensus 80 ~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 159 (657)
+++.|+++++.+. .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..|..+.++++|++|+++
T Consensus 45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 5666666666665 444 4666666666666666543 23356666666666666666665556666666666666666
Q ss_pred cccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCC
Q 006206 160 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLE 236 (657)
Q Consensus 160 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 236 (657)
+|.+++..|..+..+++|++|++++|...+.+| .+..+++|++|++++|++++ ++ .+..+++|++|++++|.+.
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 666665555566666666666666665222334 45566666666666666653 22 4455555666666555543
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=6e-17 Score=155.12 Aligned_cols=105 Identities=19% Similarity=0.226 Sum_probs=46.6
Q ss_pred CCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEE
Q 006206 126 LSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILW 205 (657)
Q Consensus 126 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 205 (657)
+++|++|++++|.++ .+| .+..+++|++|++++|.+. .++.+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 344444444444444 333 3444444444444444332 122344444444444444444443344444444444444
Q ss_pred ccCCcCCCCCchhcCCCCcccEEEccCCC
Q 006206 206 ASDNLFTGKIPEFFGTLTELADLRLQGTL 234 (657)
Q Consensus 206 Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~ 234 (657)
+++|++++..+..+..+++|++|++++|.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 44444444334444444444444444443
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=5.3e-20 Score=204.57 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=73.3
Q ss_pred ccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccC
Q 006206 225 LADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSF 304 (657)
Q Consensus 225 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 304 (657)
|+.|++++|.+++ +|. +..+++|+.|++++|.+.. .+..+..+++|++|+|++|.+++ +| .++.+++|+.|+|++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCcccccc-cchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 5566666666654 343 5555666666666655552 23455666666666666666664 45 566677777777777
Q ss_pred CCCCCCC-chhccCCCCCcEEEccCCcCCCCCCccc----cCCCCceEec
Q 006206 305 NKLTGQI-PTSLQDLSTLQYLYLGNNNLSGELPVNI----IAPNLIALDV 349 (657)
Q Consensus 305 n~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~p~~~----~~~~L~~LdL 349 (657)
|+|++.. |..+..+++|+.|+|++|++++..|... .+++|+.||+
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 7776554 6667777777777777777765544221 1566666654
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=4.6e-20 Score=205.07 Aligned_cols=122 Identities=23% Similarity=0.233 Sum_probs=100.7
Q ss_pred CCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEcc
Q 006206 200 SLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLR 279 (657)
Q Consensus 200 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls 279 (657)
.|+.|+|++|.+++ +|. +..+++|+.|++++|.++ .+|..+..+++|+.|+|++|.+...+ .+..+++|++|+|+
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECC
Confidence 58888888888885 565 888888888888888888 77888888889999999888887643 78889999999999
Q ss_pred CcccccCC-cccccCCCCCcEEeccCCCCCCCCch---hccCCCCCcEEEc
Q 006206 280 NCRVSGKI-PDQLGTFAKLQLLDLSFNKLTGQIPT---SLQDLSTLQYLYL 326 (657)
Q Consensus 280 ~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~---~l~~l~~L~~L~L 326 (657)
+|++++.. |..+..+++|+.|+|++|++++..|. .+..+++|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999776 88899999999999999999865442 2344788998865
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=8.7e-17 Score=161.34 Aligned_cols=166 Identities=23% Similarity=0.315 Sum_probs=81.0
Q ss_pred CCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccC
Q 006206 129 MQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASD 208 (657)
Q Consensus 129 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 208 (657)
+..++++++.++. ++ .+..+++|++|++++|.+.. ++ .+..+++|++|+|++|++++..+ +..+++|++|++++
T Consensus 21 l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 3444444444442 22 23444444444444444432 22 34444455555555554443222 44455555555555
Q ss_pred CcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCc
Q 006206 209 NLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIP 288 (657)
Q Consensus 209 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p 288 (657)
|++++ ++.. .. ++|++|++++|.+++. ..+..+++|++|+|++|++++. +
T Consensus 95 N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~--------------------------~~l~~l~~L~~L~Ls~N~i~~~-~ 144 (263)
T 1xeu_A 95 NRLKN-LNGI-PS-ACLSRLFLDNNELRDT--------------------------DSLIHLKNLEILSIRNNKLKSI-V 144 (263)
T ss_dssp SCCSC-CTTC-CC-SSCCEEECCSSCCSBS--------------------------GGGTTCTTCCEEECTTSCCCBC-G
T ss_pred CccCC-cCcc-cc-CcccEEEccCCccCCC--------------------------hhhcCcccccEEECCCCcCCCC-h
Confidence 55443 2211 11 4455555555544421 1233344555555555555532 2
Q ss_pred ccccCCCCCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcCCC
Q 006206 289 DQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSG 333 (657)
Q Consensus 289 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 333 (657)
.+..+++|+.|++++|++++. ..+..+++|+.|++++|.+++
T Consensus 145 -~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 145 -MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp -GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred -HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 355566666666666666643 456667777777777777664
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=8.5e-17 Score=161.43 Aligned_cols=169 Identities=21% Similarity=0.287 Sum_probs=110.2
Q ss_pred CCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeee
Q 006206 102 LRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLY 181 (657)
Q Consensus 102 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 181 (657)
+.+++.++++.+.+++ ++ .+..+++|++|++++|.++ .+| .+..+++|++|+|++|++++..+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 4456666777777763 33 4667777778888877776 444 57777788888888887775433 77778888888
Q ss_pred cccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCC
Q 006206 182 IDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAED 261 (657)
Q Consensus 182 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 261 (657)
|++|++++ +|. +.. ++|++|++++|++++. + .+..+++|++|++++|.+++. + .+..+
T Consensus 92 L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l--------------- 149 (263)
T 1xeu_A 92 VNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFL--------------- 149 (263)
T ss_dssp CCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGC---------------
T ss_pred CCCCccCC-cCc-ccc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccC---------------
Confidence 88887775 333 223 7888888888888753 3 477778888888888777643 2 34444
Q ss_pred CChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCC
Q 006206 262 STLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTG 309 (657)
Q Consensus 262 ~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 309 (657)
++|++|+|++|.+++. ..+..+++|+.|++++|++++
T Consensus 150 ---------~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 150 ---------SKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp ---------TTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred ---------CCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 4445555555555533 345556666666666666653
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=5e-16 Score=147.99 Aligned_cols=132 Identities=22% Similarity=0.293 Sum_probs=103.9
Q ss_pred eEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCch-hcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeec
Q 006206 82 THLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPA-EIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSS 160 (657)
Q Consensus 82 ~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 160 (657)
+.++++++++ +.+|..+.. +|++|++++|.+++..+. .++.+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l-~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCC-SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCc-CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 6788888877 466765543 788888888888755554 478888888888888888877788888888888888888
Q ss_pred ccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCc
Q 006206 161 NNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIP 216 (657)
Q Consensus 161 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~ 216 (657)
|++++..+..|.++++|++|+|++|++++..|..+..+++|++|+|++|.+.+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 88887777778888888888888888887777778888888888888888776544
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.63 E-value=6.9e-17 Score=185.05 Aligned_cols=145 Identities=26% Similarity=0.313 Sum_probs=124.1
Q ss_pred cCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcC
Q 006206 94 ELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGK 173 (657)
Q Consensus 94 ~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 173 (657)
..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|++|++|++|+|++|.++ .+|..|++
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 44777899999999999999998 78888889999999999999999 89999999999999999999998 77999999
Q ss_pred CCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCc-ccEEEccCCCCCCCchhh
Q 006206 174 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTE-LADLRLQGTLLEGPIPRS 242 (657)
Q Consensus 174 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~ 242 (657)
+++|++|+|++|.++ .+|..|..+++|++|+|++|.+++.+|..+..+.. +..|++.+|.+++.+|..
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 999999999999997 78888999999999999999999999988765432 234678888888877753
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.63 E-value=1.4e-15 Score=144.80 Aligned_cols=132 Identities=21% Similarity=0.287 Sum_probs=111.4
Q ss_pred CEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCc-cccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeeccc
Q 006206 106 MDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPT-ELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDS 184 (657)
Q Consensus 106 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 184 (657)
+++++++|.++ .+|..+.. +|++|+|++|++++..+. .|.++++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 68899999886 67775543 899999999999866554 488899999999999999888888899999999999999
Q ss_pred ccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCch
Q 006206 185 SGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIP 240 (657)
Q Consensus 185 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 240 (657)
|++++..+..+..+++|++|+|++|++++..|..+..+++|++|++++|.+.+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99988777778888999999999999988888888888888888888888876544
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=1.2e-15 Score=141.87 Aligned_cols=132 Identities=23% Similarity=0.237 Sum_probs=85.4
Q ss_pred CCCCEEEccCCCCC-CCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeee
Q 006206 103 RKLMDLNLGQNVLN-GSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLY 181 (657)
Q Consensus 103 ~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 181 (657)
++|++|++++|.++ +.+|..+..+++|++|+|++|.+++. ..+..+++|++|+|++|.+.+.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 56777777777765 55666666677777777777776644 5566677777777777777665666666667777777
Q ss_pred cccccCCCCC-chhccCCCCCcEEEccCCcCCCCCc---hhcCCCCcccEEEccCCCCC
Q 006206 182 IDSSGVTGSI-PQEFANLKSLRILWASDNLFTGKIP---EFFGTLTELADLRLQGTLLE 236 (657)
Q Consensus 182 Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~~---~~l~~l~~L~~L~l~~n~l~ 236 (657)
+++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 7777666432 2556666667777777666664443 35566666666666666554
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=3e-15 Score=139.23 Aligned_cols=133 Identities=20% Similarity=0.161 Sum_probs=100.0
Q ss_pred CCCCCCeeEcccCcCC-CCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcE
Q 006206 125 QLSNMQYLSLGINNFT-GRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRI 203 (657)
Q Consensus 125 ~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 203 (657)
..++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3467999999999887 77888888889999999999988765 66788888888888888888777777777888888
Q ss_pred EEccCCcCCCCC-chhcCCCCcccEEEccCCCCCCCch---hhccCCCCCCeEEcCCCCC
Q 006206 204 LWASDNLFTGKI-PEFFGTLTELADLRLQGTLLEGPIP---RSFRALNKLEDLRIGDLSA 259 (657)
Q Consensus 204 L~Ls~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~~~~~ 259 (657)
|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|..
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 888888887542 2667777777778777777765443 3455555555555554433
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=9.4e-16 Score=139.63 Aligned_cols=126 Identities=21% Similarity=0.227 Sum_probs=62.9
Q ss_pred CCCCEEEccCCCCC-CCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeee
Q 006206 103 RKLMDLNLGQNVLN-GSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLY 181 (657)
Q Consensus 103 ~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 181 (657)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+.++++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555554 44555555555555555555555533 4455555555555555555544454444455555555
Q ss_pred cccccCCCC-CchhccCCCCCcEEEccCCcCCCCCc---hhcCCCCcccEEEc
Q 006206 182 IDSSGVTGS-IPQEFANLKSLRILWASDNLFTGKIP---EFFGTLTELADLRL 230 (657)
Q Consensus 182 Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~~---~~l~~l~~L~~L~l 230 (657)
+++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 555555431 22444455555555555555443322 23344444444433
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=2.1e-15 Score=137.26 Aligned_cols=128 Identities=21% Similarity=0.159 Sum_probs=101.7
Q ss_pred CCCCCeeEcccCcCC-CCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEE
Q 006206 126 LSNMQYLSLGINNFT-GRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRIL 204 (657)
Q Consensus 126 l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 204 (657)
.++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467899999999988 78888888899999999999988765 668888888899998888887778877778888888
Q ss_pred EccCCcCCCC-CchhcCCCCcccEEEccCCCCCCCch---hhccCCCCCCeEEcC
Q 006206 205 WASDNLFTGK-IPEFFGTLTELADLRLQGTLLEGPIP---RSFRALNKLEDLRIG 255 (657)
Q Consensus 205 ~Ls~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~ 255 (657)
++++|++++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 8888888753 33677778888888888888776544 456667777776654
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=138.64 Aligned_cols=128 Identities=21% Similarity=0.304 Sum_probs=99.7
Q ss_pred eEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecc
Q 006206 82 THLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSN 161 (657)
Q Consensus 82 ~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n 161 (657)
+.++++++++. .+|..+. ++|++|+|++|.++ .+|..|..+++|++|+|++|.+++..+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 46777777764 5565443 57888888888887 67778888888888888888888777777888888888888888
Q ss_pred cCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCC
Q 006206 162 NFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG 213 (657)
Q Consensus 162 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 213 (657)
.+++..|..|..+++|++|+|++|.++...+..|..+++|+.|+|++|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 8887777778888888888888888876555567778888888888877654
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=3e-14 Score=133.69 Aligned_cols=133 Identities=23% Similarity=0.293 Sum_probs=95.8
Q ss_pred eeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeec
Q 006206 81 ITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSS 160 (657)
Q Consensus 81 v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 160 (657)
.+.++++++++. .+|..+ .++|++|++++|.+++..+..+..+++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 356677676664 345433 36788888888888765566677888888888888888766556677888888888888
Q ss_pred ccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCc
Q 006206 161 NNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIP 216 (657)
Q Consensus 161 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~ 216 (657)
|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 88876666667777788888888887775555556677777777777777766544
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=1.7e-14 Score=137.37 Aligned_cols=128 Identities=26% Similarity=0.305 Sum_probs=107.7
Q ss_pred CEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeecccc
Q 006206 106 MDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSS 185 (657)
Q Consensus 106 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 185 (657)
+++++++|.++ .+|..+. ++|++|+|++|.++ .+|..|.++++|++|+|++|.+++..+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 57889998887 6776543 58999999999998 77888899999999999999998877778889999999999999
Q ss_pred cCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCC
Q 006206 186 GVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEG 237 (657)
Q Consensus 186 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 237 (657)
.+++..+..|..+++|++|+|++|+++...+..+..+++|+.|++++|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9988777788888999999999998886666678888888888888887753
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=2.3e-14 Score=134.42 Aligned_cols=133 Identities=24% Similarity=0.272 Sum_probs=116.1
Q ss_pred CCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeeccc
Q 006206 105 LMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDS 184 (657)
Q Consensus 105 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 184 (657)
.+.++++++.++ .+|..+ .++|++|++++|++++..+..|.++++|++|++++|.+++..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 578999999887 566544 36899999999999977777789999999999999999977777789999999999999
Q ss_pred ccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCch
Q 006206 185 SGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIP 240 (657)
Q Consensus 185 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 240 (657)
|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99998777778999999999999999997777777889999999999999998766
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.56 E-value=1.8e-15 Score=157.07 Aligned_cols=261 Identities=14% Similarity=0.076 Sum_probs=151.7
Q ss_pred CceeEEEEecCCCCccCChhccC-CCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccC--------
Q 006206 79 CHITHLKIYALDIMGELPSELFM-LRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGN-------- 149 (657)
Q Consensus 79 ~~v~~L~l~~~~l~~~lp~~l~~-l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-------- 149 (657)
.++++|.+++. +...--..+.. +++|+.|||++|.+... ...-+.++.++.+.+..|.+. +..|.+
T Consensus 25 ~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~-~~~~~~~~~~~~~~~~~~~I~---~~aF~~~~~~~~~g 99 (329)
T 3sb4_A 25 NSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMY-SGKAGTYPNGKFYIYMANFVP---AYAFSNVVNGVTKG 99 (329)
T ss_dssp HHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCE-EESSSSSGGGCCEEECTTEEC---TTTTEEEETTEEEE
T ss_pred CceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEe-cCccccccccccccccccccC---HHHhcccccccccc
Confidence 35777877653 11111122333 77888888888887610 000111112333333333221 233444
Q ss_pred CCCCcEEEeecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcC----CCCCchhcC-----
Q 006206 150 LTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLF----TGKIPEFFG----- 220 (657)
Q Consensus 150 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l----~~~~~~~l~----- 220 (657)
+++|+.|+|.+ .++.+.+..|.++++|+.|++++|.+....+..|..+.++..+.+..+.. ...-...+.
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 66666666665 55544455566666666666666666544455555555555554443211 100111111
Q ss_pred ---------------------CCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEcc
Q 006206 221 ---------------------TLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLR 279 (657)
Q Consensus 221 ---------------------~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls 279 (657)
...+++.+.+.++-...........+++|+.|++++|.+.......|.++.+|+.|+|.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 23344445444432211111112237888888888888877777888888889999988
Q ss_pred CcccccCCcccccCCCCCc-EEeccCCCCCCCCchhccCCCCCcEEEccCCcCCCCCCcc-c-cCCCCceEe
Q 006206 280 NCRVSGKIPDQLGTFAKLQ-LLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVN-I-IAPNLIALD 348 (657)
Q Consensus 280 ~n~l~~~~p~~l~~l~~L~-~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~-~~~~L~~Ld 348 (657)
+| ++...+.+|.++++|+ .|++.+ +++...+.+|.+|++|+.|++++|+++ .++.. + .+++|+.|.
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEEE
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhhc
Confidence 87 6656666788888898 888888 666455678888889999998888888 44433 3 367888775
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=1.6e-15 Score=157.52 Aligned_cols=264 Identities=12% Similarity=0.083 Sum_probs=180.7
Q ss_pred ccCChhcc--CCCCCCEEEccCCCCCCCCchhcCC-CCCCCeeEcccCcCC--CCCCccccCCCCCcEEEeecccCCCCC
Q 006206 93 GELPSELF--MLRKLMDLNLGQNVLNGSIPAEIGQ-LSNMQYLSLGINNFT--GRVPTELGNLTKLISLSFSSNNFFGPL 167 (657)
Q Consensus 93 ~~lp~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~Ls~n~l~~~~ 167 (657)
|.++..+. .+++|+.|.++++ +...-...+.. +++|+.|||++|++. ...+. .++.++.+.+..|.+ .
T Consensus 13 g~l~~~l~~~~~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I---~ 85 (329)
T 3sb4_A 13 GTLISMMTEEEANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFV---P 85 (329)
T ss_dssp TCGGGGSCHHHHHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEE---C
T ss_pred CcHHhhccchhhCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---ccccccccccccccc---C
Confidence 44444443 3678899999864 22111223444 789999999999987 22222 223356666666633 2
Q ss_pred chhhcC--------CCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCC----
Q 006206 168 PKELGK--------LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLL---- 235 (657)
Q Consensus 168 p~~l~~--------l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l---- 235 (657)
+..|.+ +++|+.|+|.+ +++..-+..|.+|++|+.|++++|.+....+..|..+.++..+.+..+..
T Consensus 86 ~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~ 164 (329)
T 3sb4_A 86 AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFK 164 (329)
T ss_dssp TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTS
T ss_pred HHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcc
Confidence 345667 99999999998 88766677899999999999999999877778888888888777665221
Q ss_pred CCCchhhccCCCCC--------------------------CeEEcCCCCCCCCChhhh-hcCCCCCEEEccCcccccCCc
Q 006206 236 EGPIPRSFRALNKL--------------------------EDLRIGDLSAEDSTLDFL-ESQKSLSILSLRNCRVSGKIP 288 (657)
Q Consensus 236 ~~~~~~~l~~l~~L--------------------------~~L~l~~~~~~~~~~~~l-~~~~~L~~L~Ls~n~l~~~~p 288 (657)
.......|..+.+| +.+.+.+. +.......+ ..+++|+.|+|++|+++...+
T Consensus 165 ~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~ 243 (329)
T 3sb4_A 165 NRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPD 243 (329)
T ss_dssp TTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECT
T ss_pred ccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecH
Confidence 11112223333333 33333322 111111122 247899999999999997667
Q ss_pred ccccCCCCCcEEeccCCCCCCCCchhccCCCCCc-EEEccCCcCCCCCCcc-c-cCCCCceEecccccCCCCCCccccC-
Q 006206 289 DQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQ-YLYLGNNNLSGELPVN-I-IAPNLIALDVSYNPLSGNLPRNFAK- 364 (657)
Q Consensus 289 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~-~L~L~~N~l~~~~p~~-~-~~~~L~~LdLs~N~l~g~~p~~~~~- 364 (657)
..|..+++|+.|+|.+| ++...+.+|.++++|+ .|++.+ .++ .++.. + .+++|+.|++++|+++..-+..|..
T Consensus 244 ~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~ 320 (329)
T 3sb4_A 244 FTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNG 320 (329)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTT
T ss_pred hhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCCccCccchhhhcCC
Confidence 78999999999999998 7655566899999999 999998 666 45433 3 4799999999999998655556655
Q ss_pred CCcE
Q 006206 365 GGLS 368 (657)
Q Consensus 365 ~~l~ 368 (657)
..|+
T Consensus 321 ~~L~ 324 (329)
T 3sb4_A 321 VPSK 324 (329)
T ss_dssp CCCC
T ss_pred cchh
Confidence 5554
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=5.2e-14 Score=131.91 Aligned_cols=134 Identities=17% Similarity=0.138 Sum_probs=90.9
Q ss_pred hccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCC
Q 006206 98 ELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSL 177 (657)
Q Consensus 98 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 177 (657)
.+.++++|++|++++|.++ .+|......++|++|+|++|.+++. ..|..+++|++|+|++|.+++..+..+..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 3566777888888888877 3454333333788888888887753 567777888888888887775544445777778
Q ss_pred CeeecccccCCCCCch--hccCCCCCcEEEccCCcCCCCCch----hcCCCCcccEEEccCCCCC
Q 006206 178 QQLYIDSSGVTGSIPQ--EFANLKSLRILWASDNLFTGKIPE----FFGTLTELADLRLQGTLLE 236 (657)
Q Consensus 178 ~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~~~----~l~~l~~L~~L~l~~n~l~ 236 (657)
++|++++|.+. .+|. .+..+++|+.|++++|.+. .+|. .+..+++|+.|+++.|...
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 88888877775 3454 6677777777777777776 3344 2566666666666666543
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=4.3e-16 Score=149.23 Aligned_cols=136 Identities=23% Similarity=0.313 Sum_probs=84.3
Q ss_pred cCCCCCCEEEccCCCCCCCCch------hcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcC
Q 006206 100 FMLRKLMDLNLGQNVLNGSIPA------EIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGK 173 (657)
Q Consensus 100 ~~l~~L~~L~Ls~n~l~~~~p~------~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 173 (657)
.....++.++++.+.+++.+|. .+..+++|++|+|++|.+++ +| .+.++++|++|++++|.+. .+|..+..
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~ 91 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV 91 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence 3344555555555555554444 66667777777777777664 55 5666777777777777666 45555555
Q ss_pred CCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCc-hhcCCCCcccEEEccCCCCCCCch
Q 006206 174 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIP-EFFGTLTELADLRLQGTLLEGPIP 240 (657)
Q Consensus 174 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~ 240 (657)
+++|++|++++|.+++ +| .+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+.+|
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 6667777777777664 33 46666677777777776664222 356666677777777766655444
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=4.1e-16 Score=149.43 Aligned_cols=144 Identities=24% Similarity=0.314 Sum_probs=116.8
Q ss_pred eeEEEEecCCCCccCCh------hccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCc
Q 006206 81 ITHLKIYALDIMGELPS------ELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLI 154 (657)
Q Consensus 81 v~~L~l~~~~l~~~lp~------~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 154 (657)
++.+++..+.+.|.+|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|+
T Consensus 20 l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~ 96 (198)
T 1ds9_A 20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLE 96 (198)
T ss_dssp CCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCS
T ss_pred ccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCC
Confidence 33344444444555554 89999999999999999986 67 8899999999999999998 6888888889999
Q ss_pred EEEeecccCCCCCchhhcCCCCCCeeecccccCCCCCc-hhccCCCCCcEEEccCCcCCCCCch----------hcCCCC
Q 006206 155 SLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIP-QEFANLKSLRILWASDNLFTGKIPE----------FFGTLT 223 (657)
Q Consensus 155 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~~~----------~l~~l~ 223 (657)
+|++++|++++ +| .+..+++|++|++++|.++...+ ..+..+++|++|++++|.+.+.+|. .+..++
T Consensus 97 ~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~ 174 (198)
T 1ds9_A 97 ELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP 174 (198)
T ss_dssp EEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCS
T ss_pred EEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCC
Confidence 99999999986 45 68889999999999999985332 4789999999999999999766554 255666
Q ss_pred cccEEE
Q 006206 224 ELADLR 229 (657)
Q Consensus 224 ~L~~L~ 229 (657)
+|+.|+
T Consensus 175 ~L~~Ld 180 (198)
T 1ds9_A 175 NLKKLD 180 (198)
T ss_dssp SCSEEC
T ss_pred CcEEEC
Confidence 666665
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.42 E-value=2.1e-12 Score=137.12 Aligned_cols=248 Identities=10% Similarity=0.054 Sum_probs=189.6
Q ss_pred ChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCC
Q 006206 96 PSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLT 175 (657)
Q Consensus 96 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 175 (657)
...|.+. +|+.++|..+ ++..-..+|.++ +|+.+.|.. .+...-+..|.++++|+.++|.+|.++......|. ..
T Consensus 129 ~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~ 203 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YA 203 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TC
T ss_pred HhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ec
Confidence 3456664 7999999876 554445567774 699999986 66656667899999999999999988855555665 58
Q ss_pred CCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcC
Q 006206 176 SLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIG 255 (657)
Q Consensus 176 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 255 (657)
+|+.+.|..+ +...-...|.++++|+.+++..+ +...-...|.+ .+|+.+.+. +.++..-...|.++++|+.+.+.
T Consensus 204 ~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~ 279 (401)
T 4fdw_A 204 GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTY 279 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEE
T ss_pred ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeC
Confidence 9999999854 66556678999999999999875 44344456666 789999995 45654556789999999999998
Q ss_pred CCCCC-----CCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCCCCCcEEEccCCc
Q 006206 256 DLSAE-----DSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNN 330 (657)
Q Consensus 256 ~~~~~-----~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~ 330 (657)
++... ......|.++++|+.+.|.+ .++......|.++++|+.|+|..| ++..-..+|.++ +|+.|.+.+|.
T Consensus 280 ~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 280 GSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp SSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred CccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 87654 34567788999999999994 577566678899999999999665 664556689999 99999999998
Q ss_pred CCCCCCccc-cC-CCCceEecccccCC
Q 006206 331 LSGELPVNI-IA-PNLIALDVSYNPLS 355 (657)
Q Consensus 331 l~~~~p~~~-~~-~~L~~LdLs~N~l~ 355 (657)
+....+..+ .+ .++..|.+..+.+.
T Consensus 357 ~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 357 PPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred CcccccccccCCCCCccEEEeCHHHHH
Confidence 874333223 23 47888888877643
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.42 E-value=3.3e-12 Score=135.68 Aligned_cols=260 Identities=9% Similarity=0.059 Sum_probs=195.0
Q ss_pred CCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCee
Q 006206 101 MLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQL 180 (657)
Q Consensus 101 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 180 (657)
.+..++.+.+.++ ++..-..+|.++ +|+.+.|..+ ++..-..+|.++ +|+.+.+.+ .+....+..|.++++|+.+
T Consensus 111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 3577888888764 443445567775 7999999876 665556678774 799999986 6666667789999999999
Q ss_pred ecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCC
Q 006206 181 YIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAE 260 (657)
Q Consensus 181 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~ 260 (657)
+|..|+++......|. +.+|+.+.|..+ +...-...|.++++|+.+++..+ ++..-...|.+ .+|+.+.+. +.+.
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~ 260 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT 260 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc
Confidence 9999999855455555 689999999855 66566678899999999999875 44344456666 799999995 3455
Q ss_pred CCChhhhhcCCCCCEEEccCcccc-----cCCcccccCCCCCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcCCCCC
Q 006206 261 DSTLDFLESQKSLSILSLRNCRVS-----GKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGEL 335 (657)
Q Consensus 261 ~~~~~~l~~~~~L~~L~Ls~n~l~-----~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 335 (657)
......|.++++|+.+++.++.+. ...+..|..+++|+.++|.+ .++..-..+|.+|++|+.|.|..| ++ .+
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I 337 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT-QI 337 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC-EE
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc-EE
Confidence 566788999999999999988765 34556788999999999994 576455668999999999999665 55 44
Q ss_pred Ccc-c-cCCCCceEecccccCCCCCCccccC--CCc-EEEeecC
Q 006206 336 PVN-I-IAPNLIALDVSYNPLSGNLPRNFAK--GGL-SMNVIGS 374 (657)
Q Consensus 336 p~~-~-~~~~L~~LdLs~N~l~g~~p~~~~~--~~l-~~~l~~n 374 (657)
+.. + .+ +|+.|++++|.+....+..|.. ..+ .+.+-.+
T Consensus 338 ~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 338 NFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp CTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred cHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 433 3 35 9999999999887555555543 233 3555444
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.41 E-value=2e-13 Score=127.97 Aligned_cols=109 Identities=16% Similarity=0.152 Sum_probs=66.1
Q ss_pred cCCCCCCCeeEcccCcCCCCCCccccCC-CCCcEEEeecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCC
Q 006206 123 IGQLSNMQYLSLGINNFTGRVPTELGNL-TKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSL 201 (657)
Q Consensus 123 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 201 (657)
+.++++|+.|++++|.++ .+|. +..+ ++|++|++++|.+++. ..+..+++|++|+|++|.+++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 445667777777777776 3444 3333 3777777777776643 456666677777777776664433444666666
Q ss_pred cEEEccCCcCCCCCch--hcCCCCcccEEEccCCCCC
Q 006206 202 RILWASDNLFTGKIPE--FFGTLTELADLRLQGTLLE 236 (657)
Q Consensus 202 ~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~ 236 (657)
++|++++|++. .+|. .+..+++|+.|++++|.+.
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 66666666664 3343 4555566666666665554
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.40 E-value=1.6e-12 Score=120.99 Aligned_cols=104 Identities=19% Similarity=0.228 Sum_probs=49.3
Q ss_pred eEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecc
Q 006206 82 THLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSN 161 (657)
Q Consensus 82 ~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n 161 (657)
+.++++++.+.. +|..+ .++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 455555555532 44333 244555555555555444444555555555555555555433333444444555555444
Q ss_pred cCCCCCchhhcCCCCCCeeecccccCC
Q 006206 162 NFFGPLPKELGKLTSLQQLYIDSSGVT 188 (657)
Q Consensus 162 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 188 (657)
++++..+..|..+++|++|+|++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 444333333444444444444444443
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=3.6e-12 Score=119.00 Aligned_cols=104 Identities=20% Similarity=0.269 Sum_probs=58.4
Q ss_pred eEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecc
Q 006206 82 THLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSN 161 (657)
Q Consensus 82 ~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n 161 (657)
+.++++++.+ +.+|..+. ++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 4566666665 34555443 56666666666666555556666666666666666666443334455555555555555
Q ss_pred cCCCCCchhhcCCCCCCeeecccccCC
Q 006206 162 NFFGPLPKELGKLTSLQQLYIDSSGVT 188 (657)
Q Consensus 162 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 188 (657)
++.+..+..|..+++|++|+|++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 555433333555555555555555544
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.36 E-value=4.5e-12 Score=117.93 Aligned_cols=108 Identities=27% Similarity=0.312 Sum_probs=81.9
Q ss_pred CCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeeccc
Q 006206 105 LMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDS 184 (657)
Q Consensus 105 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 184 (657)
.+.+++++|.++ .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 467888888887 4666553 6788888888888877777788888888888888888766666677788888888888
Q ss_pred ccCCCCCchhccCCCCCcEEEccCCcCCCCC
Q 006206 185 SGVTGSIPQEFANLKSLRILWASDNLFTGKI 215 (657)
Q Consensus 185 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 215 (657)
|++++..+..+..+++|++|+|++|.+....
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 8887666666777778888888887776543
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.33 E-value=9e-12 Score=116.31 Aligned_cols=106 Identities=29% Similarity=0.317 Sum_probs=83.3
Q ss_pred CEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeecccc
Q 006206 106 MDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSS 185 (657)
Q Consensus 106 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 185 (657)
+.+++++|.++ .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67888888886 6776554 77888888888888777888888888888888888888665556778888888888888
Q ss_pred cCCCCCchhccCCCCCcEEEccCCcCCCC
Q 006206 186 GVTGSIPQEFANLKSLRILWASDNLFTGK 214 (657)
Q Consensus 186 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 214 (657)
++++..+..+..+++|++|+|++|.+...
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 88865555677888888888888877644
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.15 E-value=9.2e-13 Score=138.59 Aligned_cols=186 Identities=15% Similarity=0.096 Sum_probs=86.3
Q ss_pred CCCCEEEccCCCCCCCCchhc----C-CCCCCCeeEcccCcCCCCCCccc-cCCCCCcEEEeecccCCCCCchhh-----
Q 006206 103 RKLMDLNLGQNVLNGSIPAEI----G-QLSNMQYLSLGINNFTGRVPTEL-GNLTKLISLSFSSNNFFGPLPKEL----- 171 (657)
Q Consensus 103 ~~L~~L~Ls~n~l~~~~p~~l----~-~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~p~~l----- 171 (657)
+.|++|+|++|.++......+ . ..++|++|+|++|.++......+ ..+++|++|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 456677777777653322222 2 12466666666666653222222 223455666666665543222222
Q ss_pred cCCCCCCeeecccccCCC----CCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCC
Q 006206 172 GKLTSLQQLYIDSSGVTG----SIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALN 247 (657)
Q Consensus 172 ~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 247 (657)
...++|++|+|++|.++. .++..+..+++|++|+|++|.+...-. ..+...+...+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~--------------------~~L~~~L~~~~ 211 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL--------------------ELLAAQLDRNR 211 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH--------------------HHHHHHGGGCS
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH--------------------HHHHHHHhcCC
Confidence 123445555555555432 122223344444444444444432100 01233444455
Q ss_pred CCCeEEcCCCCCCCCC----hhhhhcCCCCCEEEccCcccccCCcccccCC---C--CCcEEe--ccCCCCC
Q 006206 248 KLEDLRIGDLSAEDST----LDFLESQKSLSILSLRNCRVSGKIPDQLGTF---A--KLQLLD--LSFNKLT 308 (657)
Q Consensus 248 ~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l---~--~L~~L~--Ls~n~l~ 308 (657)
+|++|+|++|.+.... ...+...++|++|+|++|.+++.....+..+ . .|+.+. +..|.+.
T Consensus 212 ~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 5666666665554432 2234456777777777777765443333222 2 166666 6666554
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.15 E-value=8.7e-11 Score=122.50 Aligned_cols=102 Identities=18% Similarity=0.153 Sum_probs=63.7
Q ss_pred EEEecC-CCCccCChhccCCCCCCEEEccC-CCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecc
Q 006206 84 LKIYAL-DIMGELPSELFMLRKLMDLNLGQ-NVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSN 161 (657)
Q Consensus 84 L~l~~~-~l~~~lp~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n 161 (657)
++++++ ++. .+|. |..+++|++|+|++ |.+++..+..|+.|++|++|+|++|+|++..|..|.+|++|++|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 344454 444 3666 77777777777774 7776555566777777777777777777666666667777777777777
Q ss_pred cCCCCCchhhcCCCCCCeeecccccCC
Q 006206 162 NFFGPLPKELGKLTSLQQLYIDSSGVT 188 (657)
Q Consensus 162 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 188 (657)
++++..+..+..++ |++|+|.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 66654444444333 555555555544
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.14 E-value=9.3e-11 Score=122.26 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=67.3
Q ss_pred EEEccCC-CCCCCCchhcCCCCCCCeeEccc-CcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeeccc
Q 006206 107 DLNLGQN-VLNGSIPAEIGQLSNMQYLSLGI-NNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDS 184 (657)
Q Consensus 107 ~L~Ls~n-~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 184 (657)
.++++++ .++ .+|. |..+++|++|+|++ |.+++..+..|.+|++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3566666 666 4666 77777777777774 777765556677777777777777777766666667777777777777
Q ss_pred ccCCCCCchhccCCCCCcEEEccCCcCC
Q 006206 185 SGVTGSIPQEFANLKSLRILWASDNLFT 212 (657)
Q Consensus 185 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 212 (657)
|++++..+..+..++ |+.|+|.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 777654444444443 666666666655
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.14 E-value=3.5e-12 Score=134.13 Aligned_cols=14 Identities=29% Similarity=0.114 Sum_probs=6.9
Q ss_pred CcccEEEccCCCCC
Q 006206 223 TELADLRLQGTLLE 236 (657)
Q Consensus 223 ~~L~~L~l~~n~l~ 236 (657)
++|++|+|++|.++
T Consensus 126 ~~L~~L~Ls~n~l~ 139 (372)
T 3un9_A 126 LRARKLGLQLNSLG 139 (372)
T ss_dssp HTEEEEECCSSCCC
T ss_pred HhccHhhcCCCCCC
Confidence 34455555555444
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.94 E-value=5.7e-10 Score=116.35 Aligned_cols=103 Identities=13% Similarity=0.123 Sum_probs=57.5
Q ss_pred CCceeEEEEecCCCCc-c-------CChhccCCCCCCEEEccCCCCC---------CCCchhcCCCCCCCeeEcccCcCC
Q 006206 78 SCHITHLKIYALDIMG-E-------LPSELFMLRKLMDLNLGQNVLN---------GSIPAEIGQLSNMQYLSLGINNFT 140 (657)
Q Consensus 78 ~~~v~~L~l~~~~l~~-~-------lp~~l~~l~~L~~L~Ls~n~l~---------~~~p~~l~~l~~L~~L~Ls~n~l~ 140 (657)
.++|+.|.+......| . +..++.++++|+.|.+...... +.+...+..+|+|+.|+|++|.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 3467778776555442 2 1233556788888888654321 123444566677777777766211
Q ss_pred CCCCccccCCCCCcEEEeecccCCCCCchhhc--CCCCCCeeecc
Q 006206 141 GRVPTELGNLTKLISLSFSSNNFFGPLPKELG--KLTSLQQLYID 183 (657)
Q Consensus 141 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~Ls 183 (657)
.++. +. +++|++|+|..+.+.......+. .+++|++|+|+
T Consensus 186 -~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 186 -SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp -BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred -eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 2232 32 66777777776655432222232 56677777664
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.93 E-value=1.7e-08 Score=107.01 Aligned_cols=279 Identities=11% Similarity=0.020 Sum_probs=158.6
Q ss_pred CceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcC-------------------
Q 006206 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNF------------------- 139 (657)
Q Consensus 79 ~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l------------------- 139 (657)
.+++.+.+.. ++...-..+|.++++|+.++|.++ ++..-...|.++.+|+.+.+..+-.
T Consensus 71 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~ 148 (394)
T 4fs7_A 71 RKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPE 148 (394)
T ss_dssp TTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCT
T ss_pred CCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccCc
Confidence 4677777753 344333456778888888888654 4323344566777777666543210
Q ss_pred --CCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCch
Q 006206 140 --TGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPE 217 (657)
Q Consensus 140 --~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~ 217 (657)
...-...|.++++|+.+.+.++. .......|.++.+|+.+.+..+ +.......+.++..|+.+.+..+... +.+
T Consensus 149 ~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~ 224 (394)
T 4fs7_A 149 GVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGD 224 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECT
T ss_pred cccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eeh
Confidence 00112345666677777775442 2233445666677777776554 33233445666666766666554321 223
Q ss_pred hcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCC
Q 006206 218 FFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKL 297 (657)
Q Consensus 218 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L 297 (657)
......+|+.+.+... .+..-...+..+.+|+.+.+..+. .......+.....++.+.+....+. ...+..+.+|
T Consensus 225 ~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L 299 (394)
T 4fs7_A 225 FALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSL 299 (394)
T ss_dssp TTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTC
T ss_pred hhcccCCCceEEECCC-ceecccccccccccceeEEcCCCc-ceeeccccccccccceeccCceeec---cccccccccc
Confidence 3334456777766543 222223456777888888886542 2234445666777777776654332 2346677788
Q ss_pred cEEeccCCCCCCCCchhccCCCCCcEEEccCCcCCCCCCccc--cCCCCceEecccccCCCCCCccccC-CCcE-EEee
Q 006206 298 QLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI--IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVI 372 (657)
Q Consensus 298 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~~L~~LdLs~N~l~g~~p~~~~~-~~l~-~~l~ 372 (657)
+.+.+..+ ++..-..+|.++.+|+.++|..+ ++ .++... .+.+|+.+++..| ++..-...|.. ..|+ +.+.
T Consensus 300 ~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 300 TEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp CEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred cccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 88888655 44333456777888888888644 44 344332 3678888888766 54322334444 4554 5554
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.90 E-value=3.1e-10 Score=118.41 Aligned_cols=63 Identities=17% Similarity=0.331 Sum_probs=31.5
Q ss_pred CCCCCEEEccCcccccCCcccc---cCCCCCcEEeccCCCCCCC----CchhccCCCCCcEEEccCCcCC
Q 006206 270 QKSLSILSLRNCRVSGKIPDQL---GTFAKLQLLDLSFNKLTGQ----IPTSLQDLSTLQYLYLGNNNLS 332 (657)
Q Consensus 270 ~~~L~~L~Ls~n~l~~~~p~~l---~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~ 332 (657)
+++|++|+|++|.+.+..+..+ ..+++|++|+|+.|.+++. ++..+..+++|+.|+|++|.++
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 4566666666665543322222 2345566666666665542 1222233455666666655554
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.73 E-value=1.6e-07 Score=99.54 Aligned_cols=263 Identities=11% Similarity=0.093 Sum_probs=153.6
Q ss_pred eeEEEEecCCCCccCChhccCCCCCCEEEccCCC---CCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEE
Q 006206 81 ITHLKIYALDIMGELPSELFMLRKLMDLNLGQNV---LNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLS 157 (657)
Q Consensus 81 v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~---l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 157 (657)
++.+.+.. .+...-..+|.++++|+.+.+..|. ++..-..+|..+.+|+.+.+..+ ++..-...|.++.+|+.+.
T Consensus 66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 56666643 2333334567778888888877653 43223456777777777776544 3333445667777788877
Q ss_pred eecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCC---
Q 006206 158 FSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTL--- 234 (657)
Q Consensus 158 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~--- 234 (657)
+..+ +.......|..+.+|+.+.+..+ +...-...|. ..+|+.+.+..+-.. .-...+..+.+++......+.
T Consensus 144 lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~ 219 (394)
T 4gt6_A 144 IPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPA 219 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCB
T ss_pred ccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhccccceeccccccccc
Confidence 7643 33333445666677777776543 2211122232 244555555432111 111223333333333222111
Q ss_pred ---------------------------------CCCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCc
Q 006206 235 ---------------------------------LEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNC 281 (657)
Q Consensus 235 ---------------------------------l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n 281 (657)
+...-...|..+.+|+.+.+.+.. .......+.+++.|+.+.+. +
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~ 297 (394)
T 4gt6_A 220 IDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-S 297 (394)
T ss_dssp SSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-T
T ss_pred ccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEeccccc-ceecCcccccccccccccCC-C
Confidence 111122356778889988886542 23345667788889999886 4
Q ss_pred ccccCCcccccCCCCCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcCCCCCCccc--cCCCCceEecccccC
Q 006206 282 RVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI--IAPNLIALDVSYNPL 354 (657)
Q Consensus 282 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~~L~~LdLs~N~l 354 (657)
.++......|.++.+|+.++|..+ ++..-..+|.+|.+|+.+.|..+ ++ .+.... .+++|+.+++.++..
T Consensus 298 ~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 298 RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHH
T ss_pred cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCcee
Confidence 455445567888899999999765 54344557888999999999654 54 455433 478999999988764
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.67 E-value=1.6e-07 Score=99.51 Aligned_cols=220 Identities=15% Similarity=0.094 Sum_probs=147.5
Q ss_pred chhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCC
Q 006206 120 PAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLK 199 (657)
Q Consensus 120 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 199 (657)
...|.++++|+.+.+.++... .-...|.++++|+.+.+..+ +.......|.++..|+.+.+..+... +........
T Consensus 155 ~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~ 230 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKT 230 (394)
T ss_dssp TTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTC
T ss_pred hhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccC
Confidence 456888889999998765432 44567888899999988765 44444566788888888887665433 233344556
Q ss_pred CCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEcc
Q 006206 200 SLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLR 279 (657)
Q Consensus 200 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls 279 (657)
+|+.+.+..+. ...-...+..+..|+.+.+..+... .....|..+..++.+......+ ....+..+.+|+.+.+.
T Consensus 231 ~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 231 GVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLL 305 (394)
T ss_dssp CCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEEC
T ss_pred CCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccc
Confidence 78888776432 2233455677788888888766433 3344667777787777655432 23456677888888886
Q ss_pred CcccccCCcccccCCCCCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcCCCCCCccc--cCCCCceEecccc
Q 006206 280 NCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI--IAPNLIALDVSYN 352 (657)
Q Consensus 280 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~~L~~LdLs~N 352 (657)
++ ++..-..+|.++.+|+.++|..+ ++..-..+|.+|.+|+.+.+..| ++ .++... .+++|+.+++..+
T Consensus 306 ~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 306 DS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEGG
T ss_pred cc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECCC
Confidence 54 55444557788888888888654 55344557888888998888766 54 444333 3688888888655
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.57 E-value=1.2e-06 Score=92.75 Aligned_cols=268 Identities=12% Similarity=0.102 Sum_probs=176.1
Q ss_pred hhccCCC-CCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCc---CCCCCCccccCCCCCcEEEeecccCCCCCchhhc
Q 006206 97 SELFMLR-KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINN---FTGRVPTELGNLTKLISLSFSSNNFFGPLPKELG 172 (657)
Q Consensus 97 ~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~---l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~ 172 (657)
.+|.+++ .|+.+.|..+ ++..-..+|.++.+|+.+.+..|. ++..-..+|.++.+|+.+.+..+ ++......|.
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence 3466664 5999998764 553456689999999999998764 55444567888999998887654 4444556788
Q ss_pred CCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCcccEEEccCCCCCCCchhhccCCCCCCeE
Q 006206 173 KLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDL 252 (657)
Q Consensus 173 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 252 (657)
.+.+|+.+.+..+ +.......|..+.+|+.+.+..+ +...-...|. ..+|+.+.+..+-.. .-...+..+.+++..
T Consensus 135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~ 210 (394)
T 4gt6_A 135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALSTI 210 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCCEE
T ss_pred hhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhcccccee
Confidence 8899999999654 33344566888999999999765 3322223343 467888888654322 223345555555544
Q ss_pred EcCCCCC------------------------------------CCCChhhhhcCCCCCEEEccCcccccCCcccccCCCC
Q 006206 253 RIGDLSA------------------------------------EDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAK 296 (657)
Q Consensus 253 ~l~~~~~------------------------------------~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~ 296 (657)
....... .......|.++..|+.+.+.++... .....|.++++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~ 289 (394)
T 4gt6_A 211 TSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPA 289 (394)
T ss_dssp EECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTT
T ss_pred cccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce-ecCcccccccc
Confidence 4322111 0112345677889999999765443 45567888999
Q ss_pred CcEEeccCCCCCCCCchhccCCCCCcEEEccCCcCCCCCCccc--cCCCCceEecccccCCCCCCccccC-CCcE-EEee
Q 006206 297 LQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI--IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVI 372 (657)
Q Consensus 297 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~~L~~LdLs~N~l~g~~p~~~~~-~~l~-~~l~ 372 (657)
|+.+.+. +.++..-...|.++.+|+.+.|..+ ++ .+.... .+.+|+.+.|..+ ++..-...|.. ..|+ +.+.
T Consensus 290 L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 290 LQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp CCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEES
T ss_pred cccccCC-CcccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEEC
Confidence 9999996 4455344557899999999999865 44 444333 4789999999755 55322345555 6665 7776
Q ss_pred cCC
Q 006206 373 GSS 375 (657)
Q Consensus 373 ~n~ 375 (657)
++.
T Consensus 366 ~~~ 368 (394)
T 4gt6_A 366 GSR 368 (394)
T ss_dssp SCH
T ss_pred Cce
Confidence 653
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.37 E-value=1.4e-05 Score=83.78 Aligned_cols=259 Identities=12% Similarity=0.040 Sum_probs=124.3
Q ss_pred ceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEee
Q 006206 80 HITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 159 (657)
Q Consensus 80 ~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 159 (657)
+++.+.+.. .++..-..+|.++.+|+.++|..+ ++..-..+|.++ +|+.+.+..+ +...-...|.. .+|+.+.+.
T Consensus 47 ~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~lp 121 (379)
T 4h09_A 47 RISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEFP 121 (379)
T ss_dssp GCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEECC
T ss_pred CCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccCC
Confidence 566666643 333333456788888888888654 443334566666 5777766543 43233334544 368888876
Q ss_pred cccCCCCCchhhcCCCCCCeeecccccCCCCCchhccCCCCCcEEEccCCcCCC------------CCchhcCCCCcccE
Q 006206 160 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG------------KIPEFFGTLTELAD 227 (657)
Q Consensus 160 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~------------~~~~~l~~l~~L~~ 227 (657)
.+ +.......|.+ .+|+.+.+..+ ++..-...+..+.+++.+.+..+.... .....+.....+..
T Consensus 122 ~~-~~~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (379)
T 4h09_A 122 GA-TTEIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTE 198 (379)
T ss_dssp TT-CCEECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSE
T ss_pred Cc-ccccccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccc
Confidence 54 22222233433 24555554332 222233445666677766665443211 11112223333444
Q ss_pred EEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccCCCC
Q 006206 228 LRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKL 307 (657)
Q Consensus 228 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 307 (657)
+.+.... .......+....+|+.+.+..+ ........+.....|+.+.+..+ ++..-...+..+.+|+.+.+..+ +
T Consensus 199 ~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i 274 (379)
T 4h09_A 199 FTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-V 274 (379)
T ss_dssp EECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-C
T ss_pred cccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-c
Confidence 4333221 1122223444555555555432 22223334445555666655443 33233344555556666665433 3
Q ss_pred CCCCchhccCCCCCcEEEccCCcCCCCCCccc--cCCCCceEeccc
Q 006206 308 TGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI--IAPNLIALDVSY 351 (657)
Q Consensus 308 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~~L~~LdLs~ 351 (657)
.......|..+++|+.+.+.++.++ .++... .+.+|+.++|..
T Consensus 275 ~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 275 KTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp SEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCT
T ss_pred eeccccccccccccccccccccccc-eehhhhhcCCCCCCEEEcCc
Confidence 2222234555666666666555554 333222 245566666543
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.33 E-value=5.5e-08 Score=91.38 Aligned_cols=117 Identities=19% Similarity=0.070 Sum_probs=64.1
Q ss_pred CChhccCCCCCCEEEccCC-CCCCC----CchhcCCCCCCCeeEcccCcCCCC----CCccccCCCCCcEEEeecccCCC
Q 006206 95 LPSELFMLRKLMDLNLGQN-VLNGS----IPAEIGQLSNMQYLSLGINNFTGR----VPTELGNLTKLISLSFSSNNFFG 165 (657)
Q Consensus 95 lp~~l~~l~~L~~L~Ls~n-~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~ 165 (657)
+...+...+.|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.+..
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 4445666778888888887 77532 344556667777777777776531 22334445566666666666653
Q ss_pred C----CchhhcCCCCCCeeec--ccccCCCC----CchhccCCCCCcEEEccCCcC
Q 006206 166 P----LPKELGKLTSLQQLYI--DSSGVTGS----IPQEFANLKSLRILWASDNLF 211 (657)
Q Consensus 166 ~----~p~~l~~l~~L~~L~L--s~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l 211 (657)
. +...+...++|++|+| ++|.+... +...+...++|++|+|++|.+
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2 2233444455555555 44555422 122233334555555555443
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.30 E-value=2.2e-07 Score=87.19 Aligned_cols=15 Identities=13% Similarity=-0.090 Sum_probs=7.1
Q ss_pred ccCCCCCcEEEccCC
Q 006206 195 FANLKSLRILWASDN 209 (657)
Q Consensus 195 l~~l~~L~~L~Ls~n 209 (657)
+...++|++|+|++|
T Consensus 32 l~~~~~L~~L~L~~n 46 (185)
T 1io0_A 32 QNNDPDLEEVNLNNI 46 (185)
T ss_dssp HTTCTTCCEEECTTC
T ss_pred HhcCCCCCEEEecCC
Confidence 334444555555544
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.19 E-value=7.8e-08 Score=95.16 Aligned_cols=80 Identities=21% Similarity=0.398 Sum_probs=48.5
Q ss_pred cCCCCCcEEEeecccCCC--CCchhhcCCCCCCeeecccccCCCCCchhccCCC--CCcEEEccCCcCCCCCc-------
Q 006206 148 GNLTKLISLSFSSNNFFG--PLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLK--SLRILWASDNLFTGKIP------- 216 (657)
Q Consensus 148 ~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L~Ls~n~l~~~~~------- 216 (657)
.++++|+.|+|++|.+++ .+|..+..+++|+.|+|++|++.+. ..+..+. +|++|+|++|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 356667777777777665 2334555667777777777777643 2233333 67777777777765444
Q ss_pred hhcCCCCcccEEE
Q 006206 217 EFFGTLTELADLR 229 (657)
Q Consensus 217 ~~l~~l~~L~~L~ 229 (657)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2355667777664
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.11 E-value=1.6e-06 Score=85.80 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=72.1
Q ss_pred CCCCCE--EEccCCCCC---CCCchhcCCCCCCCeeEcccCcCCC--CCCccccCCCCCcEEEeecccCCCCCchhhcCC
Q 006206 102 LRKLMD--LNLGQNVLN---GSIPAEIGQLSNMQYLSLGINNFTG--RVPTELGNLTKLISLSFSSNNFFGPLPKELGKL 174 (657)
Q Consensus 102 l~~L~~--L~Ls~n~l~---~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 174 (657)
.+.|.. ++++.|... +.++....++++|+.|+|++|++++ .+|..+..+++|+.|+|++|++.+. ..+..+
T Consensus 140 dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l 217 (267)
T 3rw6_A 140 DPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKI 217 (267)
T ss_dssp CHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGG
T ss_pred CcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhc
Confidence 334444 566666432 1122222568899999999999987 4556677899999999999999864 234444
Q ss_pred C--CCCeeecccccCCCCCc-------hhccCCCCCcEEEc
Q 006206 175 T--SLQQLYIDSSGVTGSIP-------QEFANLKSLRILWA 206 (657)
Q Consensus 175 ~--~L~~L~Ls~n~l~~~~p-------~~l~~l~~L~~L~L 206 (657)
. +|++|+|++|.+.+.+| ..+..+|+|+.||=
T Consensus 218 ~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 218 KGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp TTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred ccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 4 89999999999987665 23678899998853
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.95 E-value=0.0002 Score=74.93 Aligned_cols=263 Identities=10% Similarity=0.016 Sum_probs=166.7
Q ss_pred CCCceeEEEEecCCCCccCChhccCCCCCCEEEccCCCCCCCCchhcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEE
Q 006206 77 NSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISL 156 (657)
Q Consensus 77 ~~~~v~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 156 (657)
...+++.+.+..+ +...-..+|.++ .|+.+.+..+ +...-...|... +|+.+.+..+- ...-...|.+. +|+.+
T Consensus 67 ~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~~-~~i~~~~F~~~-~l~~~ 140 (379)
T 4h09_A 67 SCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGAT-TEIGNYIFYNS-SVKRI 140 (379)
T ss_dssp TCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEECCTTC-CEECTTTTTTC-CCCEE
T ss_pred CCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccCCCcc-ccccccccccc-eeeee
Confidence 3457899998643 443334456665 6888877654 332223345554 79999987653 32333445444 57777
Q ss_pred EeecccCCCCCchhhcCCCCCCeeecccccCC------------CCCchhccCCCCCcEEEccCCcCCCCCchhcCCCCc
Q 006206 157 SFSSNNFFGPLPKELGKLTSLQQLYIDSSGVT------------GSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTE 224 (657)
Q Consensus 157 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~------------~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 224 (657)
.+..+ ++......|....+++.+.+..+... ......+.....+..+.+..... ......+....+
T Consensus 141 ~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~ 218 (379)
T 4h09_A 141 VIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVK-TVTAYGFSYGKN 218 (379)
T ss_dssp EECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCC-EECTTTTTTCSS
T ss_pred eccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccccccccccccee-EEeecccccccc
Confidence 66543 33344556677778887776654332 11223344555666666554322 133445666778
Q ss_pred ccEEEccCCCCCCCchhhccCCCCCCeEEcCCCCCCCCChhhhhcCCCCCEEEccCcccccCCcccccCCCCCcEEeccC
Q 006206 225 LADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSF 304 (657)
Q Consensus 225 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 304 (657)
|+.+.+..+ +.......+..+.+|+.+.+..+ +.......+.++.+|+.+.+..+ +.......|..+++|+.+.+.+
T Consensus 219 l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~ 295 (379)
T 4h09_A 219 LKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDN 295 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECC
T ss_pred cceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccc
Confidence 888888654 33233456778889999988764 44445667788889999998654 4434455788899999999998
Q ss_pred CCCCCCCchhccCCCCCcEEEccCCcCCCCCCccc--cCCCCceEecccc
Q 006206 305 NKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI--IAPNLIALDVSYN 352 (657)
Q Consensus 305 n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~~L~~LdLs~N 352 (657)
+.++..-..+|.++.+|+.+.|..+ ++ .|.... .+.+|+++.+..+
T Consensus 296 ~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 296 SAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCTT
T ss_pred cccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECCc
Confidence 8887555668899999999999755 44 444333 3688888887554
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.76 E-value=6.6e-06 Score=75.50 Aligned_cols=34 Identities=18% Similarity=0.320 Sum_probs=14.4
Q ss_pred CCcEEeccCCC-CCCCCchhccCCCCCcEEEccCC
Q 006206 296 KLQLLDLSFNK-LTGQIPTSLQDLSTLQYLYLGNN 329 (657)
Q Consensus 296 ~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~N 329 (657)
+|++|+|++|. +++.--..+..+++|+.|+|++|
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence 34444444442 43332233344444444444444
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.65 E-value=2.6e-05 Score=71.57 Aligned_cols=85 Identities=21% Similarity=0.223 Sum_probs=50.7
Q ss_pred cccEEEccCCCCCCCchhhccCCCCCCeEEcCCCC-CCCCChhhhhcC----CCCCEEEccCcc-cccCCcccccCCCCC
Q 006206 224 ELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLS-AEDSTLDFLESQ----KSLSILSLRNCR-VSGKIPDQLGTFAKL 297 (657)
Q Consensus 224 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~~----~~L~~L~Ls~n~-l~~~~p~~l~~l~~L 297 (657)
+|+.|+++++.++..--..+..+++|++|+|++|. ++......+..+ ++|++|+|++|. +++.--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 35555555555444333445556666666666664 333344445443 367788887774 665544556677888
Q ss_pred cEEeccCCC-CC
Q 006206 298 QLLDLSFNK-LT 308 (657)
Q Consensus 298 ~~L~Ls~n~-l~ 308 (657)
++|+|++|. ++
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 888888874 44
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.84 E-value=0.00049 Score=64.24 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=6.1
Q ss_pred CCCCEEEccCcccc
Q 006206 271 KSLSILSLRNCRVS 284 (657)
Q Consensus 271 ~~L~~L~Ls~n~l~ 284 (657)
++|++|+|++|.|+
T Consensus 98 ~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 98 PSLRVLNVESNFLT 111 (197)
T ss_dssp SSCCEEECCSSBCC
T ss_pred CccCeEecCCCcCC
Confidence 44444444444443
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.83 E-value=0.00068 Score=63.26 Aligned_cols=64 Identities=19% Similarity=0.247 Sum_probs=28.6
Q ss_pred CCCCCCeeecccc-cCCC----CCchhccCCCCCcEEEccCCcCCC----CCchhcCCCCcccEEEccCCCCC
Q 006206 173 KLTSLQQLYIDSS-GVTG----SIPQEFANLKSLRILWASDNLFTG----KIPEFFGTLTELADLRLQGTLLE 236 (657)
Q Consensus 173 ~l~~L~~L~Ls~n-~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~ 236 (657)
+-+.|++|+|++| ++.. .+.+.+..-+.|+.|+|++|++.. .+.+.+..-+.|++|+|+.|.+.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3455666666553 4431 122334444555555555555541 12223333344444444444443
No 164
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=96.42 E-value=0.00034 Score=45.74 Aligned_cols=31 Identities=13% Similarity=0.237 Sum_probs=21.3
Q ss_pred cccceEEEEeehhHHHHHHHHHHHhhhcccc
Q 006206 609 KHVGKIVGITVGCAAALVIISSVFYLWWTKD 639 (657)
Q Consensus 609 ~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~ 639 (657)
-+.+.|+|+++|+++.+++++.+++++||||
T Consensus 8 ls~GaIAGiVvG~v~gv~li~~l~~~~~rrr 38 (38)
T 2k1k_A 8 LTGGEIVAVIFGLLLGAALLLGILVFRSRRA 38 (38)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCceeeeehHHHHHHHHHHHHHHHHeecC
Confidence 3467788999998877666666565555554
No 165
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=96.40 E-value=0.00037 Score=46.82 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=20.3
Q ss_pred ccceEEEEeehhHHHHHHHHHHHhhhcccccccc
Q 006206 610 HVGKIVGITVGCAAALVIISSVFYLWWTKDSSSH 643 (657)
Q Consensus 610 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 643 (657)
..+.|++.+||+++++++++++.++++|||+...
T Consensus 8 ~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~ 41 (44)
T 2l2t_A 8 RTPLIAAGVIGGLFILVIVGLTFAVYVRRKSIKK 41 (44)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred CcceEEEeehHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 4556666677766665566555555666655443
No 166
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=96.31 E-value=0.00047 Score=46.47 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=19.3
Q ss_pred ccceEEEEeehhHHHHHHHHHHHhhhccccccc
Q 006206 610 HVGKIVGITVGCAAALVIISSVFYLWWTKDSSS 642 (657)
Q Consensus 610 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~ 642 (657)
+.+.|++.+||++++++++++++++++|||+.+
T Consensus 9 ~~~~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 9 KIPSIATGMVGALLLLLVVALGIGLFMRRRHIV 41 (44)
T ss_dssp CSSSSTHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CcceEEeehhHHHHHHHHHHHHHHHHhhhhHhh
Confidence 345566666666665555555555566665543
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.31 E-value=0.006 Score=52.95 Aligned_cols=55 Identities=24% Similarity=0.282 Sum_probs=26.0
Q ss_pred EEEccCcccc-cCCcccccCCCCCcEEeccCCCCCCCCchhccCCCCCcEEEccCCcC
Q 006206 275 ILSLRNCRVS-GKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNL 331 (657)
Q Consensus 275 ~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l 331 (657)
.++.+++.++ ..+|..+. ++|++|+|++|+|+...+..|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4455555554 23443322 3455555555555533333444455555555555544
No 168
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.59 E-value=0.019 Score=49.67 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=14.4
Q ss_pred CCEEEccCCCCCCCCchhcCCCCCCCeeEcccCc
Q 006206 105 LMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINN 138 (657)
Q Consensus 105 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 138 (657)
|++|+|++|.|+..-+..|..+++|++|+|++|.
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4444444444443223334444444444444443
No 169
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=93.82 E-value=0.0045 Score=41.47 Aligned_cols=30 Identities=20% Similarity=0.383 Sum_probs=16.7
Q ss_pred cceEEEEeehhHHHHHHHHHHHhhhcccccc
Q 006206 611 VGKIVGITVGCAAALVIISSVFYLWWTKDSS 641 (657)
Q Consensus 611 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~ 641 (657)
...|++++|| +.+++++++++++|+|||+.
T Consensus 11 ~~~Ia~~vVG-vll~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 11 LTSIISAVVG-ILLVVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHCS
T ss_pred ccchHHHHHH-HHHHHHHHHHHHhheehhhh
Confidence 3456677778 33445555555556665543
No 170
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=89.67 E-value=0.038 Score=36.94 Aligned_cols=13 Identities=8% Similarity=-0.066 Sum_probs=5.4
Q ss_pred ceEEEEeehhHHH
Q 006206 612 GKIVGITVGCAAA 624 (657)
Q Consensus 612 ~~~~g~~~g~~~~ 624 (657)
..|++.+++++++
T Consensus 13 ~~I~~~vv~Gv~l 25 (41)
T 2k9y_A 13 LAVIGGVAVGVVL 25 (41)
T ss_dssp THHHHHHHHHHHH
T ss_pred EEEEeehhHHHHH
Confidence 3344444444443
No 171
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=82.71 E-value=7.9 Score=39.67 Aligned_cols=77 Identities=21% Similarity=0.296 Sum_probs=49.7
Q ss_pred ccCCCCCceEEEEEeeeeeeecCCcCcccccceEEEEEECCEEecccCchhhhcCCCCceEEEEEEEEeeCCeEEEEEEe
Q 006206 492 YGLGLENGKYRIDLHFAEITMEDSLSWKGLGRRVFDVYIQGERVLRDLNIKKEAGGSKRALVKTFEANVTNTIIEIHFFW 571 (657)
Q Consensus 492 ~~~~v~~g~y~v~lhF~e~~~~~~~~~~~~~~r~F~V~i~~~~~~~~~di~~~~~~~~~~~~~~~~v~v~~~~l~i~~~~ 571 (657)
+.++|++|+|.|++.+.+-. .-.|..+++..+. ..+| .-....|.|++.+|.+++++..
T Consensus 80 f~v~~~~g~Y~v~v~~g~~~-------------~~~v~~e~~~~~~-----~~~g---~~~~~~~~v~~~~g~~~l~~~~ 138 (375)
T 2o14_A 80 FNVDLPNGLYEVKVTLGNTA-------------RASVAAEGVFQVI-----NMTG---DGAEDTFQIPVTDGQLNLLVTE 138 (375)
T ss_dssp EEEECCSEEEEEEEEESSCS-------------EEEEEETTEEEEE-----EEES---TTCEEEEEEEECSSEEEEEEEE
T ss_pred EEEEcCCCceEEEEEecCCc-------------ceEEEEcceEEEE-----ecCC---CcEEEEEEEEeeCCeEEEeeee
Confidence 77899999999998875531 1234455553332 2233 3345678999999999988531
Q ss_pred ccCcCccccCCcccCceEeeEEEEecc
Q 006206 572 AGKGTCCIPFQGTYGPLVSAIHASQVS 598 (657)
Q Consensus 572 ~~~g~~~~~~~~~~~~~~n~iei~~~~ 598 (657)
..- +. -+.+++|||.+..
T Consensus 139 ~~~--------g~-~~~l~~i~v~~~~ 156 (375)
T 2o14_A 139 GKA--------GT-AFTLSALKIKKLS 156 (375)
T ss_dssp SST--------TS-CCEEEEEEEEEEE
T ss_pred ccC--------CC-CcccceEEEeccC
Confidence 111 21 2789999998753
No 172
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=80.09 E-value=0.067 Score=33.80 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=11.4
Q ss_pred EEEEeehhHHHHHHHHHHHhhhccccc
Q 006206 614 IVGITVGCAAALVIISSVFYLWWTKDS 640 (657)
Q Consensus 614 ~~g~~~g~~~~~~~~~~~~~~~~~~~~ 640 (657)
|+..++| +.+++++++.+.+++|||+
T Consensus 10 IaagVvg-lll~vii~l~~~~~iRRr~ 35 (35)
T 1iij_A 10 IIATVVG-VLLFLILVVVVGILIKRRR 35 (35)
T ss_dssp HHHHHHH-HHHHHHHTTTTTHHHHHCC
T ss_pred eHHHHHH-HHHHHHHHHHhheEEeecC
Confidence 3333445 3333334333444566653
No 173
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=76.60 E-value=0.94 Score=32.80 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=7.9
Q ss_pred EeehhHHHHHHHHHH
Q 006206 617 ITVGCAAALVIISSV 631 (657)
Q Consensus 617 ~~~g~~~~~~~~~~~ 631 (657)
++.|+++.+++++.+
T Consensus 12 ivlGg~~~lll~~gl 26 (70)
T 2klu_A 12 IVLGGVAGLLLFIGL 26 (70)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHH
Confidence 455666655555433
No 174
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=73.57 E-value=0.31 Score=30.56 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=15.5
Q ss_pred cceEEEEeehhHHHHHHHHHHHhhh
Q 006206 611 VGKIVGITVGCAAALVIISSVFYLW 635 (657)
Q Consensus 611 ~~~~~g~~~g~~~~~~~~~~~~~~~ 635 (657)
.+.++|+++|.++..+++++++++|
T Consensus 6 ~gaIaGIVvgdi~~t~~i~~~vy~~ 30 (33)
T 2l34_A 6 PGVLAGIVVGDLVLTVLIALAVYFL 30 (33)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEeEeHHHHHHHHHHHHHHhhe
Confidence 3467788888777655555555443
No 175
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A
Probab=71.60 E-value=24 Score=30.29 Aligned_cols=91 Identities=16% Similarity=0.223 Sum_probs=54.2
Q ss_pred cccccCCCC-CceEEEEEeeeeeeecCCcCcccccceEEEEEECCEEecccCchhhhcCCCCceEEEEEEEEeeCCeEEE
Q 006206 489 LRYYGLGLE-NGKYRIDLHFAEITMEDSLSWKGLGRRVFDVYIQGERVLRDLNIKKEAGGSKRALVKTFEANVTNTIIEI 567 (657)
Q Consensus 489 l~~~~~~v~-~g~y~v~lhF~e~~~~~~~~~~~~~~r~F~V~i~~~~~~~~~di~~~~~~~~~~~~~~~~v~v~~~~l~i 567 (657)
++ |.+.++ .|.|.|++.++.-. .+.|.++|+|||..+...+.+.. +|+...-......|....|.-.|
T Consensus 42 v~-~~V~v~~aG~Y~l~~ryan~~---------~~~~~~~l~VNG~~~~~~v~~p~-Tg~w~~w~~~~~~v~L~aG~ntI 110 (144)
T 2w47_A 42 IE-WNVNAPSSGSYALIFRYANGT---------TANRPMRITVNGNIVKPSMDFVS-TGAWTTWNEAGIVANLNQGNNVI 110 (144)
T ss_dssp EE-EEEEESSSEEEEEEEEEECCS---------SSCCCEEEEETTEEEEEEECCCC-CSSTTCCEEEEEEEEECSEEEEE
T ss_pred EE-EEEECCCCcEEEEEEEEECCC---------CCCeEEEEEECCeEeeeEEEecC-CCCCCeeEEEEEEEEECCCccEE
Confidence 44 777776 57999999987531 13588999999987544444432 33333333333345555565555
Q ss_pred EEEeccCcCccccCCcccCceEeeEEEEeccc
Q 006206 568 HFFWAGKGTCCIPFQGTYGPLVSAIHASQVST 599 (657)
Q Consensus 568 ~~~~~~~g~~~~~~~~~~~~~~n~iei~~~~~ 599 (657)
++... + ..+ .+.|.-|+|.+...
T Consensus 111 ~l~~~--~-----~~g--~~niD~i~v~~~~~ 133 (144)
T 2w47_A 111 RATAI--A-----SDG--GPNVDYLKVFSANA 133 (144)
T ss_dssp EEEEC--S-----TTC--CCEEEEEEEEECTT
T ss_pred EEEEe--C-----CCC--CEEEeEEEEEeCCC
Confidence 54211 1 112 48899999988544
No 176
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}
Probab=70.85 E-value=15 Score=31.79 Aligned_cols=87 Identities=9% Similarity=0.117 Sum_probs=51.4
Q ss_pred ccCCCC-CceEEEEEeeeeeeecCCcCcccccceEEEEEECCEEecccCchhhhcCCCCceEEEEEEEEeeCCeEEEEEE
Q 006206 492 YGLGLE-NGKYRIDLHFAEITMEDSLSWKGLGRRVFDVYIQGERVLRDLNIKKEAGGSKRALVKTFEANVTNTIIEIHFF 570 (657)
Q Consensus 492 ~~~~v~-~g~y~v~lhF~e~~~~~~~~~~~~~~r~F~V~i~~~~~~~~~di~~~~~~~~~~~~~~~~v~v~~~~l~i~~~ 570 (657)
|.+.++ .|.|.|++.++.-. .+.|.++|++||..+ ..+.+.. +|+...--.....|....|.-+|+|.
T Consensus 43 ~~V~v~~aG~Y~l~~ryang~---------~~~r~~~l~VNG~~~-~~v~~p~-Tg~W~~w~t~~~~v~L~aG~ntI~l~ 111 (145)
T 2w3j_A 43 WSLSAASAKTYTAQIRFGNGG---------TSARRATVVVNDSQI-KTLDFPT-NSNWTQWQTVNVDIPLKAGTNSIKLV 111 (145)
T ss_dssp EEEEESSCEEEEEEEEEECCS---------SSCCCEEEEETTEEE-EEECCCC-CSCTTSCEEEEEEEEECSEEEEEEEE
T ss_pred EEEECCCCeEEEEEEEEECCC---------CCCeEEEEEECCeEe-eEEEecC-CCCCCeeEEEEEEEEECCCceEEEEE
Confidence 667776 57999999986321 145889999999886 4444322 33333322333345555565555552
Q ss_pred eccCcCccccCCcccCceEeeEEEEecc
Q 006206 571 WAGKGTCCIPFQGTYGPLVSAIHASQVS 598 (657)
Q Consensus 571 ~~~~g~~~~~~~~~~~~~~n~iei~~~~ 598 (657)
..+ +...+-|.-|+|.+..
T Consensus 112 ~~~---------~~g~~niD~i~v~~~~ 130 (145)
T 2w3j_A 112 AET---------ADGLANIDSIRVTGNG 130 (145)
T ss_dssp ECS---------TTCCCEEEEEEECSTT
T ss_pred Eec---------CcCCEEEEEEEEEcCC
Confidence 110 1124889999987644
No 177
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=67.96 E-value=19 Score=30.14 Aligned_cols=70 Identities=16% Similarity=0.245 Sum_probs=42.2
Q ss_pred cccccCCCC-CceEEEEEeeeeeeecCCcCcccccceEEEEEECCEEecccCchhhhcCCCCceEEEEEEEEeeCCeEEE
Q 006206 489 LRYYGLGLE-NGKYRIDLHFAEITMEDSLSWKGLGRRVFDVYIQGERVLRDLNIKKEAGGSKRALVKTFEANVTNTIIEI 567 (657)
Q Consensus 489 l~~~~~~v~-~g~y~v~lhF~e~~~~~~~~~~~~~~r~F~V~i~~~~~~~~~di~~~~~~~~~~~~~~~~v~v~~~~l~i 567 (657)
++ |.+.++ .|.|.++++++.-. -+.|.++|++||..+...+.+-. +|+...-......|....|.-.|
T Consensus 41 v~-~~V~v~~aG~Y~l~~rya~~~---------~~~~~~~l~VnG~~~~~~v~~p~-tg~W~~w~~~~~~v~L~aG~ntI 109 (127)
T 2vzp_A 41 VE-WTVTVPSAGTYDVVVRYANGT---------TTSRPLDFSVNGSISASGVAFGS-TGTWPAWTTKTVRVTLAAGVNKI 109 (127)
T ss_dssp EE-EEEEESSSEEEEEEEEEECCS---------SSCCCEEEEETTEEEEEEECCCC-CSSTTCCEEEEEEEEECSEEEEE
T ss_pred EE-EEEEcCCCCEEEEEEEEEcCC---------CCCeEEEEEECCEEeeeEEEecC-CCCCCceEEEEEEEEECCCceEE
Confidence 44 777776 57999999987632 13578999999988643344322 33333333333445555665555
Q ss_pred EE
Q 006206 568 HF 569 (657)
Q Consensus 568 ~~ 569 (657)
++
T Consensus 110 ~l 111 (127)
T 2vzp_A 110 KA 111 (127)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 178
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}
Probab=67.07 E-value=24 Score=30.93 Aligned_cols=96 Identities=16% Similarity=0.294 Sum_probs=54.1
Q ss_pred cc-CCCC-CceEEEEEeeeeeeecCCcCcc-cccceEEEEEECCEEecccCchhhhcCCCCceEEEEEEEEeeCCeEEEE
Q 006206 492 YG-LGLE-NGKYRIDLHFAEITMEDSLSWK-GLGRRVFDVYIQGERVLRDLNIKKEAGGSKRALVKTFEANVTNTIIEIH 568 (657)
Q Consensus 492 ~~-~~v~-~g~y~v~lhF~e~~~~~~~~~~-~~~~r~F~V~i~~~~~~~~~di~~~~~~~~~~~~~~~~v~v~~~~l~i~ 568 (657)
|. +.++ .|.|.|++.|+.-.......|. ....|..+|+|||... ..++.. .+|+....-.....|....|.=+|+
T Consensus 51 f~~V~~~~aG~Y~l~irYang~~~~~~~y~~~~~~r~~~v~VNG~~~-~~v~fp-~Tg~W~~~~~~tv~V~L~aG~NtI~ 128 (156)
T 2wz8_A 51 FNNVYVPQAGTYRMVVQFANAEVFGQHSYNNNVVDRYCSISVNGGPE-KGHYFF-NTRGWNTYRTDIIDVYLNAGNNTIR 128 (156)
T ss_dssp EEEEEESSCEEEEEEEEEECCCBC-------CBCCEEEEEEETTCCC-EEEEEC-CCSSTTCCEEEEEEEEECSEEEEEE
T ss_pred EEEEecCCCcEEEEEEEEECCCcccccccCCccCcceEEEEECCcee-eEEEeC-CCCCCCcceEEEEEEEECCCceEEE
Confidence 65 6665 5799999999765310000011 1247999999999863 333332 2343444434444555566666677
Q ss_pred EEeccCcCccccCCcccCceEeeEEEEec
Q 006206 569 FFWAGKGTCCIPFQGTYGPLVSAIHASQV 597 (657)
Q Consensus 569 ~~~~~~g~~~~~~~~~~~~~~n~iei~~~ 597 (657)
|... ...-+.|-|-.|+|.+.
T Consensus 129 ~~~~--------~~~~~~pdiD~i~v~~~ 149 (156)
T 2wz8_A 129 FYNG--------TSGSYAPNIDKIAIAAL 149 (156)
T ss_dssp EECC--------STTCBCCEEEEEEEEC-
T ss_pred EEec--------CCCCCCcEEEEEEEecc
Confidence 6211 01224688999998764
No 179
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=66.04 E-value=1.6 Score=28.66 Aligned_cols=15 Identities=33% Similarity=0.645 Sum_probs=9.9
Q ss_pred ccceEEEEeehhHHH
Q 006206 610 HVGKIVGITVGCAAA 624 (657)
Q Consensus 610 ~~~~~~g~~~g~~~~ 624 (657)
++++++|..+|++++
T Consensus 15 srga~iGL~v~gVai 29 (43)
T 2llm_A 15 NKGAIIGLMVGGVVI 29 (43)
Confidence 355677887766654
No 180
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A
Probab=58.07 E-value=25 Score=30.11 Aligned_cols=86 Identities=9% Similarity=0.128 Sum_probs=49.8
Q ss_pred ccCCCC-CceEEEEEeeeeeeecCCcCcccccceEEEEEECCEEe-cccCchhhhcCCCCceEEEEEEEEeeCCeEEEEE
Q 006206 492 YGLGLE-NGKYRIDLHFAEITMEDSLSWKGLGRRVFDVYIQGERV-LRDLNIKKEAGGSKRALVKTFEANVTNTIIEIHF 569 (657)
Q Consensus 492 ~~~~v~-~g~y~v~lhF~e~~~~~~~~~~~~~~r~F~V~i~~~~~-~~~~di~~~~~~~~~~~~~~~~v~v~~~~l~i~~ 569 (657)
|...++ .|.|.|++.++.-. -..|..+|++||..+ ...+++.. +|+...--.....|....|.-.|++
T Consensus 43 ~~V~v~~aG~Y~l~~ryang~---------~~~r~~~l~VNG~~~g~~~v~~p~-Tg~W~~w~t~~~~v~L~aG~ntI~l 112 (139)
T 2w87_A 43 WAIDATSSGRRTLTIRYANGG---------TANRNGSLVINGGSNGNYTVSLPT-TGAWTTWQTATIDVDLVQGNNIVQL 112 (139)
T ss_dssp EEEEESSCEEEEEEEEEECCS---------SSCCCEEEEETTTTTCEEEECCCC-CSSTTCCEEEEEEEEECSEEEEEEE
T ss_pred EEEECCCCcEEEEEEEEECCC---------CCCceEEEEECCEEcceeEEEecC-CCCCCccEEEEEEEEECCCceEEEE
Confidence 666665 47999999886532 125889999999765 23444332 3333333333344555555545554
Q ss_pred EeccCcCccccCCcccCceEeeEEEEe
Q 006206 570 FWAGKGTCCIPFQGTYGPLVSAIHASQ 596 (657)
Q Consensus 570 ~~~~~g~~~~~~~~~~~~~~n~iei~~ 596 (657)
... .+...+-|.-|+|.+
T Consensus 113 ~~~---------~~~g~~niD~i~v~~ 130 (139)
T 2w87_A 113 SAT---------TAEGLPNIDSLSVVG 130 (139)
T ss_dssp EES---------STTCCCEEEEEEEES
T ss_pred EEc---------CCCCCEEEEEEEEec
Confidence 211 111248899999876
No 181
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=50.82 E-value=4.6 Score=25.95 Aligned_cols=7 Identities=29% Similarity=0.829 Sum_probs=4.1
Q ss_pred hcccccc
Q 006206 635 WWTKDSS 641 (657)
Q Consensus 635 ~~~~~~~ 641 (657)
.|+||+|
T Consensus 31 ~w~qKPr 37 (39)
T 2l6w_A 31 LWQKKPR 37 (39)
Confidence 4666654
No 182
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=33.64 E-value=6.8 Score=25.94 Aligned_cols=13 Identities=8% Similarity=-0.082 Sum_probs=6.1
Q ss_pred cceEEEEeehhHH
Q 006206 611 VGKIVGITVGCAA 623 (657)
Q Consensus 611 ~~~~~g~~~g~~~ 623 (657)
.++|+++++|+..
T Consensus 10 ~wiIi~s~l~GLl 22 (42)
T 2k1a_A 10 IWWVLVGVLGGLL 22 (42)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 4455544444443
No 183
>2lp1_A C99; alzheimer'S D membrane protein, transmembrane Pro; NMR {Homo sapiens}
Probab=39.50 E-value=9 Score=31.16 Aligned_cols=13 Identities=38% Similarity=0.756 Sum_probs=8.4
Q ss_pred ceEEEEeehhHHH
Q 006206 612 GKIVGITVGCAAA 624 (657)
Q Consensus 612 ~~~~g~~~g~~~~ 624 (657)
+.++|..+|++++
T Consensus 30 ~a~igL~v~~vai 42 (122)
T 2lp1_A 30 GAIIGLMVGGVVI 42 (122)
Confidence 3577777766654
No 184
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=32.89 E-value=5.5 Score=27.85 Aligned_cols=14 Identities=7% Similarity=-0.204 Sum_probs=7.2
Q ss_pred cceEEEEeehhHHH
Q 006206 611 VGKIVGITVGCAAA 624 (657)
Q Consensus 611 ~~~~~g~~~g~~~~ 624 (657)
.++|+++++|++.+
T Consensus 9 ~WiIi~svl~GLLL 22 (54)
T 2l8s_A 9 LWVILLSAFAGLLL 22 (54)
T ss_dssp THHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 45555555555443
No 185
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=27.04 E-value=91 Score=24.74 Aligned_cols=36 Identities=11% Similarity=-0.007 Sum_probs=14.2
Q ss_pred hcCCCCCCCeeEcccCcCCCCCCccccCCCCCcEEEe
Q 006206 122 EIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 158 (657)
Q Consensus 122 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 158 (657)
.|.++.+|+.+.|-.+ ++..-...|.++.+|+.+.+
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLIL 50 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEE
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEE
Confidence 3444444444444322 22122333444444444444
No 186
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain; LCMV, MHC class I, immune escape, immune system; 1.99A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A 1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A 1nez_A*
Probab=26.92 E-value=13 Score=37.49 Aligned_cols=12 Identities=0% Similarity=-0.247 Sum_probs=0.0
Q ss_pred ceEEEEeehhHH
Q 006206 612 GKIVGITVGCAA 623 (657)
Q Consensus 612 ~~~~g~~~g~~~ 623 (657)
..|+|+++|+++
T Consensus 281 ~~~~~i~~~~~~ 292 (348)
T 1s7q_A 281 VSNMATVAVLVV 292 (348)
T ss_dssp ------------
T ss_pred ccEEEEEeehhh
Confidence 345676666543
No 187
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=25.98 E-value=1.6e+02 Score=23.24 Aligned_cols=44 Identities=14% Similarity=0.098 Sum_probs=24.1
Q ss_pred CCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCeeeccc
Q 006206 140 TGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDS 184 (657)
Q Consensus 140 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 184 (657)
+.+-...|.++++|+.+.|-.+ ++.+-...|.++.+|+.+.+..
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3333445666666666666543 3334445566666666666644
No 188
>2cdp_A Beta-agarase 1; carbohydrate-binding module, hydrolase; HET: GAL AAL; 1.59A {Saccharophagus degradans} PDB: 2cdo_A*
Probab=22.56 E-value=3.7e+02 Score=23.13 Aligned_cols=66 Identities=8% Similarity=0.111 Sum_probs=36.7
Q ss_pred ccCCCC-CceEEEEEeeeeeeecCCcCcccccceEEEEEECCE---EecccCchhhhcCCCCceEEEEE-EEEeeCCeEE
Q 006206 492 YGLGLE-NGKYRIDLHFAEITMEDSLSWKGLGRRVFDVYIQGE---RVLRDLNIKKEAGGSKRALVKTF-EANVTNTIIE 566 (657)
Q Consensus 492 ~~~~v~-~g~y~v~lhF~e~~~~~~~~~~~~~~r~F~V~i~~~---~~~~~~di~~~~~~~~~~~~~~~-~v~v~~~~l~ 566 (657)
|.+.++ .|.|.+.+..+... ....+.|+++|. ..+....+- ..| ...-...+- .|..+.|+-+
T Consensus 71 y~V~v~~aG~Y~i~~rvas~~----------~g~~i~l~vdg~~~~~~~g~~~vp-~tG-W~~w~t~t~~~v~L~aG~ht 138 (160)
T 2cdp_A 71 YTIAVAQAGNYTISYQAGSGV----------TGGSIEFLVNENGSWASKTVTAVP-NQG-WDNFQPLNGGSVYLSAGTHQ 138 (160)
T ss_dssp EEEEESSCEEEEEEEEEEBSS----------SSCEEEEEEECSSSEEEEEEEECC-BSC-TTCCEEEEEEEEEECSEEEE
T ss_pred EEEEcCCCcEEEEEEEEEcCC----------CCceEEEEECCCCCceeeeEEEcC-CCC-CceeEEeeeeEEEeCCCeEE
Confidence 777776 68999998876542 224678888885 333333332 222 433222232 3555556555
Q ss_pred EEE
Q 006206 567 IHF 569 (657)
Q Consensus 567 i~~ 569 (657)
|++
T Consensus 139 L~l 141 (160)
T 2cdp_A 139 VRL 141 (160)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 189
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=21.83 E-value=43 Score=23.41 Aligned_cols=14 Identities=7% Similarity=-0.104 Sum_probs=6.9
Q ss_pred cceEEEEeehhHHH
Q 006206 611 VGKIVGITVGCAAA 624 (657)
Q Consensus 611 ~~~~~g~~~g~~~~ 624 (657)
.++|+++++|++.+
T Consensus 12 ~wiIi~svl~GLll 25 (54)
T 2knc_A 12 IWWVLVGVLGGLLL 25 (54)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 45555555554433
No 190
>4f87_A Plycb; lysin, bacteriophage, antimicrobial protein, viral protein; 1.40A {Streptococcus phage C1} PDB: 4f88_A
Probab=20.96 E-value=53 Score=22.71 Aligned_cols=11 Identities=9% Similarity=0.507 Sum_probs=9.2
Q ss_pred cCceEeeEEEE
Q 006206 585 YGPLVSAIHAS 595 (657)
Q Consensus 585 ~~~~~n~iei~ 595 (657)
|-|||||+||=
T Consensus 29 yrafingveig 39 (72)
T 4f87_A 29 YRAFINGVEIG 39 (72)
T ss_dssp EEEEETTEEEE
T ss_pred hhheecceEec
Confidence 45999999985
Done!