BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006207
(657 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TEE|A Chain A, Crystal Structure Of Salmonella Flga In Open Form
pdb|3VKI|A Chain A, Monoclinic Crystal Structure Of Salmonella Flga In Closed
Form
pdb|3VKI|B Chain B, Monoclinic Crystal Structure Of Salmonella Flga In Closed
Form
pdb|3VKI|C Chain C, Monoclinic Crystal Structure Of Salmonella Flga In Closed
Form
pdb|3VKI|D Chain D, Monoclinic Crystal Structure Of Salmonella Flga In Closed
Form
Length = 219
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 165 LIRLQQNWKVKR-QRVAAPASGNEGFTIDLFDNSLYDSAPVS----RPSSLSTIRIDHDS 219
L ++Q W+VK QRV A+G EGF+++ ++ ++A R +S + DS
Sbjct: 132 LTMIRQAWRVKAGQRVQVIANG-EGFSVNAEGQAMNNAAVAQNARVRMTSGQIVSGTVDS 190
Query: 220 AGMLAINLPPNS 231
G + INL PNS
Sbjct: 191 DGNILINLDPNS 202
>pdb|3AOV|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Plp
pdb|3AOV|C Chain C, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Plp
pdb|3AOW|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Akg
pdb|3AOW|C Chain C, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Akg
pdb|3ATH|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Four Akgs As Substrates
And Allosteric Effectors
pdb|3ATH|C Chain C, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Four Akgs As Substrates
And Allosteric Effectors
pdb|3AV7|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Pmp, Kyn As Substrates
And Kya As Products
pdb|3AV7|C Chain C, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Pmp, Kyn As Substrates
And Kya As Products
Length = 448
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 92 SVIIDLINTVEANDAVTVAG-MTRPKALPNEVLSDLSVSAATK 133
S + +L+ VE +D +++AG + PK P E++ D+ V K
Sbjct: 64 SEVRELLKLVETSDIISLAGGLPNPKTFPKEIIRDILVEIMEK 106
>pdb|1X0M|A Chain A, A Human Kynurenine Aminotransferase Ii Homologue From
Pyrococcus Horikoshii Ot3
Length = 403
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 92 SVIIDLINTVEANDAVTVAG-MTRPKALPNEVLSDLSVSAATK 133
S + +L+ VE +D +++AG + PK P E++ D+ V K
Sbjct: 19 SEVRELLKLVETSDIISLAGGLPNPKTFPKEIIRDILVEIMEK 61
>pdb|2GMN|A Chain A, Crystal Structure Of Bjp-1, A Subclass B3
Metallo-beta-lactamase Of Bradyrhizobium Japonicum
pdb|2GMN|B Chain B, Crystal Structure Of Bjp-1, A Subclass B3
Metallo-beta-lactamase Of Bradyrhizobium Japonicum
Length = 274
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 549 QQVASQVIRWLHEEALMVGIKANRDFLSLSFELD----QGETVSL-----VAHVDPEDMR 599
Q VA + + L E G + N D + ++D +G+ V+L AH P
Sbjct: 100 QLVAGERDKPLLEGGYYPGDEKNEDLAFPAVKVDRAVKEGDRVTLGDTTLTAHATPGHSP 159
Query: 600 GCISWWLVMEDG 611
GC SW + ++DG
Sbjct: 160 GCTSWEMTVKDG 171
>pdb|3LVZ|A Chain A, New Refinement Of The Crystal Structure Of Bjp-1, A
Subclass B3 Metallo-Beta-Lactamase Of Bradyrhizobium
Japonicum
pdb|3LVZ|B Chain B, New Refinement Of The Crystal Structure Of Bjp-1, A
Subclass B3 Metallo-Beta-Lactamase Of Bradyrhizobium
Japonicum
pdb|3M8T|A Chain A, Crystal Structure Of The Complex Between Class B3
Beta-Lactamase Bjp-1 And 4-Nitrobenzene-Sulfonamide
pdb|3M8T|B Chain B, Crystal Structure Of The Complex Between Class B3
Beta-Lactamase Bjp-1 And 4-Nitrobenzene-Sulfonamide
Length = 294
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 549 QQVASQVIRWLHEEALMVGIKANRDFLSLSFELD----QGETVSL-----VAHVDPEDMR 599
Q VA + + L E G + N D + ++D +G+ V+L AH P
Sbjct: 120 QLVAGERDKPLLEGGYYPGDEKNEDLAFPAVKVDRAVKEGDRVTLGDTTLTAHATPGHSP 179
Query: 600 GCISWWLVMEDG 611
GC SW + ++DG
Sbjct: 180 GCTSWEMTVKDG 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,893,563
Number of Sequences: 62578
Number of extensions: 755407
Number of successful extensions: 1465
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1463
Number of HSP's gapped (non-prelim): 10
length of query: 657
length of database: 14,973,337
effective HSP length: 105
effective length of query: 552
effective length of database: 8,402,647
effective search space: 4638261144
effective search space used: 4638261144
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)