Query 006207
Match_columns 657
No_of_seqs 89 out of 91
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 19:56:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006207.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006207hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4512 Vitamin D3 receptor in 100.0 1.8E-59 3.8E-64 497.8 16.3 489 1-592 1-542 (625)
2 PF10156 Med17: Subunit 17 of 100.0 6.7E-46 1.4E-50 406.9 -0.5 394 6-453 33-463 (467)
3 KOG4512 Vitamin D3 receptor in 78.8 0.81 1.7E-05 51.7 0.8 86 68-155 245-338 (625)
4 COG4911 Uncharacterized conser 62.5 13 0.00028 34.9 4.6 57 547-612 45-107 (123)
5 PF13080 DUF3926: Protein of u 42.0 21 0.00046 28.3 2.1 27 538-565 2-28 (44)
6 KOG4657 Uncharacterized conser 33.5 50 0.0011 34.8 3.9 44 568-611 151-195 (246)
7 COG4608 AppF ABC-type oligopep 30.5 40 0.00086 36.2 2.7 20 573-592 28-47 (268)
8 COG1124 DppF ABC-type dipeptid 26.4 48 0.001 35.3 2.5 19 574-592 23-41 (252)
9 KOG3946 Glutaminyl cyclase [Po 16.9 67 0.0015 35.1 1.2 13 451-463 290-302 (338)
10 COG1134 TagH ABC-type polysacc 15.1 1E+02 0.0022 32.9 1.9 39 574-612 43-100 (249)
No 1
>KOG4512 consensus Vitamin D3 receptor interacting protein [Transcription; Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-59 Score=497.84 Aligned_cols=489 Identities=19% Similarity=0.210 Sum_probs=367.6
Q ss_pred CCCceeeeeccCcccchhcccccccccCCCCCChhHHHHHHhccccccccccchhhhhhccccc----cCC--CCCCCCc
Q 006207 1 MNGNLEISVDKLPVKRLDAIEETGAERFPPDVGYDEKRESLIRRIDFAWAVEKDDNKRLKKSSK----ESS--SSATTTP 74 (657)
Q Consensus 1 M~~~V~lSLE~~~e~~IqeI~~DG~EiY~~pls~sEkl~klaqRIDFsk~~~~d~kk~~~~~~E----e~e--~~~qp~~ 74 (657)
|+.+|+||+|+.+|++|.||++||+|+|+||+++||.+++||+||||+++..+|.|+.++- ++ +++ .++|+++
T Consensus 1 ms~av~isiesace~qv~evg~DGtE~y~Pp~~~Se~la~la~RIDfs~~S~dd~k~~e~~-a~~~aD~d~~~~qfq~sl 79 (625)
T KOG4512|consen 1 MSRAVRISIESACEKQVHEVGEDGTEVYEPPEPESEDLANLAKRIDFSLESNDDWKGTEPI-AEIGADGDERYLQFQTSL 79 (625)
T ss_pred CCcceeeehhhHHHHHHHHHccCCceeecCCCccchHHHHHHHhcccccccchhhhccccc-ccccccccchhccccccc
Confidence 8999999999999999999999999999999999999999999999999887665544331 12 222 6799999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhccCceeeccC----CCCCCCchhhhchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006207 75 WQWQNMVENLQFAHQELSVIIDLINTVEANDAVTVAGM----TRPKALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKS 150 (657)
Q Consensus 75 wPW~sV~~~L~~Al~El~VLlDvLsilk~~~y~~ld~~----tkP~p~p~~il~d~avqv~~K~kaL~~Aa~iLk~gAer 150 (657)
|||+.|+|+|+.|++|+|||.|++++.++++|+++|+. ..|+|+ +|..+|++++.+||++|++||+|
T Consensus 80 wpwD~Vrn~lr~altE~cvL~dv~Si~~dkk~~~lDpl~~ea~~~kp~---------~Q~~S~kk~~~~aaq~lLkgaer 150 (625)
T KOG4512|consen 80 WPWDHVRNLLRSALTEWCVLVDVKSIYEDKKVDPLDPLDDEAEAGKPT---------NQEKSNKKREKEAAQKLLKGAER 150 (625)
T ss_pred CcHHHHHHHHHHHHhhhhheecccchhcccccCCCCcchhhccCCCch---------HHHHhhhHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999998842 344433 89999999999999999999999
Q ss_pred HHHHH----HHH-HHHHHHHHHHhhcceeeee----------cccCCCCCCCCceEEeecCccCCCCCCCCCCCCccccc
Q 006207 151 LEQQI----AKE-ARFYGALIRLQQNWKVKRQ----------RVAAPASGNEGFTIDLFDNSLYDSAPVSRPSSLSTIRI 215 (657)
Q Consensus 151 Leq~v----~re-~~F~~eLlrLRqnWrLkr~----------R~aGs~~g~~GF~Fdv~k~s~~D~a~~~r~~sls~i~~ 215 (657)
|+.++ |+. ++|..+++||||+|||||+ |.||+.|+++| +|+|.+++..|....+
T Consensus 151 l~~si~eq~Nk~v~dF~~ellrlrq~WrlrKv~n~i~gdlsyr~ags~f~~tg-tFeV~k~~~~d~d~~~---------- 219 (625)
T KOG4512|consen 151 LNPSIIEQQNKKVEDFRFELLRLRQFWRLRKVYNFIKGDLSYRFAGSIFKNTG-TFEVKKRFYQDFDRFF---------- 219 (625)
T ss_pred cChhhhHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhhccCce-eEEEehhhhhhHHhhh----------
Confidence 99887 454 9999999999999999999 99999999999 9999999976643311
Q ss_pred cCCCCCceEEecCCCCccceeEEEeeeecCCCccccccccCC------CCCCCCccccccCCchhhhHhHHHHHHHHHHH
Q 006207 216 DHDSAGMLAINLPPNSCRSFRFGFLGVQSGDSSKQCSKVKNS------CSPRPSKEAKESVNDDECVREKHSLLREVHQA 289 (657)
Q Consensus 216 ~~d~~g~L~V~vP~dl~~~L~~s~i~V~~~~~~k~~~~~~~~------~~~~~~~~~~~~~~d~~~~~~w~~~L~~AQ~s 289 (657)
..+.+.|.|.+|.++.|+ +||+|+ ++|+.+|++.. ..|.+. + ...||+..|+.|||+
T Consensus 220 -~e~~~~l~v~~p~~l~gv---Ayikv~---~qk~~pd~g~~~svnl~~hp~~~---------~-q~g~wq~~Le~aqnv 282 (625)
T KOG4512|consen 220 -AEKFVHLFVMKPGKLPGV---AYIKVN---EQKVTPDAGPWSSVNLYLHPESL---------N-QLGHWQTLLEVAQNV 282 (625)
T ss_pred -hhhccceeeeccccCCCc---eeEeee---eeecCCccccHHHHHHhcCCccc---------c-ccchHHHHHHHHHHH
Confidence 357788999999999999 999998 99999998772 222221 2 446999999999999
Q ss_pred HhHHHHHHHHHHHHhhcCCce--EEeeeccceEEEeecCCeeEEEEeccCCCCCCcccccccccccccccccccCCccch
Q 006207 290 IFYEQVFDIVNREAFKQSLGV--NVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVNQNVESGILPLDSHDGVKL 367 (657)
Q Consensus 290 LFceELF~~L~REA~ql~s~i--~Vtgiren~I~i~l~~g~~L~i~Lv~s~~~~~s~~~~~~d~~~~~~L~l~~~~~~~~ 367 (657)
+||+|+|++|+|||+|+++++ .|+| |+|...++|.+||.|+|||+.++.++--...+||
T Consensus 283 l~ckemfAql~reaIqvq~p~Ph~V~~---Nqi~~~~~p~lQl~Islchsa~~k~sQ~a~~ndh---------------- 343 (625)
T KOG4512|consen 283 LSCKEMFAQLVREAIQVQEPTPHTVST---NQITQWIWPALQLAISLCHSAQDKQSQRASSNDH---------------- 343 (625)
T ss_pred HHHHHHHHHHhhhceeecCCCCeeeec---cceeeeecHHHHHHHHHHhhcchhhcCcCCccch----------------
Confidence 999999999999999999998 7777 9999999999999999999998773322211111
Q ss_pred hhhhhhhhccCCCCCCCcchHHHHHHHHHH-HHhhccCCC-------CCCcCcccCCCCCC---------CCCchhHHHH
Q 006207 368 AEEKDDILRKSGGYPNPLTYEIYLQQVFHE-YLYGRAKNK-------PISTGTRVSGPPTK---------DGSGLLGHFC 430 (657)
Q Consensus 368 ~~~~~~~~~~~~~~~n~~s~eiyL~q~~~e-~~~~~~~e~-------l~~~~~~~~g~~a~---------~~~~LL~~f~ 430 (657)
--++|.-|.+..|| |-|.+.--+ +-.+.|..+|+.|. ...++|+-|.
T Consensus 344 ----------------~~vleh~lHll~refh~~ss~~m~phpaSapfg~K~~~l~gpma~d~n~l~~~~~s~g~Le~ii 407 (625)
T KOG4512|consen 344 ----------------GLVLEHMLHLLRREFHDFSSSIMKPHPASAPFGAKSCKLEGPMAEDQNRLKKTLFSFGKLECII 407 (625)
T ss_pred ----------------hhHHHHHHHHHHHHHHhhccccCCCCCccccccchhhhccCcchhhHHHHHHHHHHHHHHHHHH
Confidence 12558888888888 333311111 22355566677664 4568889999
Q ss_pred HhhhhhhhhhhHHHHHhhhhcCCCceeeeecCcccccccceEEEEecCcccccccCCCCchhhhccceeeeEEeccccce
Q 006207 431 LSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRTSSWTVFLKVPQSILHAESNSRTAETAKSHFRTNVVVNDDCIH 510 (657)
Q Consensus 431 ~~~~Hr~~s~kv~~~Le~~v~~vp~l~~~s~ptw~~~~ssw~~~~~vp~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 510 (657)
+.+.|--...+....+||+...+--=++++ -|+.|-+---.|.+|-=-|.--.-.++ +..+|.-+ ...|
T Consensus 408 ~Qa~Hif~rsr~a~~vd~la~~~edpqi~~--hW~~~n~~~~scvkl~i~~~Gy~~i~~----~~li~~I~----~rsl- 476 (625)
T KOG4512|consen 408 KQAPHIFSRSRLAIFVDNLAFLREDPQIRE--HWRVRNVGDYSCVKLSIHIFGYKYITP----IQLIFDIS----RRSL- 476 (625)
T ss_pred HhCchhHHHHHHHHHHHHHHhhhcCHHHHH--HHhhccCCceeEEEEEEEEeeeccccc----eeEEEEhh----hhHH-
Confidence 899887777899999999999993333444 477777655555554333322221111 11111110 0011
Q ss_pred eccCCCCccccccccCCCCCCCcc-ccccCCCCchHHHHHHHHHHHHHHHHHHHhhhccccccceeeEEEEecCC--ceE
Q 006207 511 VEGEGTPNVVGLFKGRSEDMSSMN-KYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQG--ETV 587 (657)
Q Consensus 511 ~~~~~~p~~~~~~~~~~~~~~~~~-~~~c~~~~lp~~~lqq~a~~~i~wl~~ea~~~g~~~~~dfl~l~~~~~~~--~~~ 587 (657)
+---.||.-|. ||-=+ +|--|||-|+.++=|.=+..=|..+|-++ |+-|=.+.-| |-|
T Consensus 477 -------------~~~~rdgrVi~lSy~~q--elrd~ll~qi~qhqI~~~~~Lar~m~w~v----ls~Snh~g~g~~E~v 537 (625)
T KOG4512|consen 477 -------------SNNMRDGRVIELSYPKQ--ELRDMLLVQIVQHQIQSGNGLARDMKWKV----LSYSNHYGEGDSEKV 537 (625)
T ss_pred -------------hhhccCCcEEEEecCHH--HHHHHHHHHHHHHHHHHHHhHhhccCceE----eecccccCCCccccc
Confidence 11111222221 23222 34568999999999999999999999887 3333114444 457
Q ss_pred eEEEe
Q 006207 588 SLVAH 592 (657)
Q Consensus 588 ~lva~ 592 (657)
|+.-.
T Consensus 538 gnas~ 542 (625)
T KOG4512|consen 538 GNASW 542 (625)
T ss_pred ccchh
Confidence 76433
No 2
>PF10156 Med17: Subunit 17 of Mediator complex; InterPro: IPR019313 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med17 of the Mediator complex. The Med17 subunit is located within the head domain and is essential for cell viability to the extent that a mutant strain of Saccharomyces cerevisiae (Baker's yeast) lacking it shows all RNA polymerase II-dependent transcription ceasing at non-permissive temperatures.; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3RJ1_B.
Probab=100.00 E-value=6.7e-46 Score=406.93 Aligned_cols=394 Identities=20% Similarity=0.238 Sum_probs=143.6
Q ss_pred eeeeccCcccchhcccccccccCCCCCChhHHHHHHhccccccccccchhhhhhccccc--cCCCCCCCCccchHHHHHH
Q 006207 6 EISVDKLPVKRLDAIEETGAERFPPDVGYDEKRESLIRRIDFAWAVEKDDNKRLKKSSK--ESSSSATTTPWQWQNMVEN 83 (657)
Q Consensus 6 ~lSLE~~~e~~IqeI~~DG~EiY~~pls~sEkl~klaqRIDFsk~~~~d~kk~~~~~~E--e~e~~~qp~~wPW~sV~~~ 83 (657)
+++|+.+.++.++|+++ |.++|.++.++.+++++.++++||.+..+++++.++.+..+ +++.....-.+.|++|+++
T Consensus 33 ~~~l~~~i~ri~~Erg~-~~f~~lte~sL~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~r~ev~~~ 111 (467)
T PF10156_consen 33 PLSLEELIERINQERGP-GSFRDLTEESLQEEIAALAQKIDFSEESDEEEEDEEDEEKEEEEEEMTQEQFPKARMEVLEH 111 (467)
T ss_dssp -------------------------------------------------------------------TTHHHHHHHHSTT
T ss_pred CCcHHHHHHHHHhCcCC-CCcccCCHHHHHHHHHhhhcccchhhcCcccccccccccccccccccchhHHHHHHHHHHHH
Confidence 45666678999999999 99999999999999999999999998766543322211101 1112233334559999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCcee-----ecc---------------CCCCCCCchhhhchhhhhHHHHHHHHHHHHHH
Q 006207 84 LQFAHQELSVIIDLINTVEANDAVT-----VAG---------------MTRPKALPNEVLSDLSVSAATKLQCYRHLGIY 143 (657)
Q Consensus 84 L~~Al~El~VLlDvLsilk~~~y~~-----ld~---------------~tkP~p~p~~il~d~avqv~~K~kaL~~Aa~i 143 (657)
|+.|++|+++++|+|++++++.++. +++ +.+|++.+...+.+.+++++||+++|++|+++
T Consensus 112 l~~A~~E~s~~LD~vSlLls~~~p~~a~~s~Sp~l~~~~p~gsL~~d~i~~~~~~~~~~~~~~~v~~g~K~~aL~~a~~~ 191 (467)
T PF10156_consen 112 LNQALNESSVALDFVSLLLSKVRPTQAYSSMSPFLKKKVPPGSLNADKIPPPPKSESEQLDDAAVSIGWKLKALNKAADL 191 (467)
T ss_dssp TTTTTHHHHHHHHHHHHH--SSSS-SSSTTSSTT-------------------------SSHHHHTTTTTTTTTSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccccCcccCCCCCcCccccccCCCCCCchHhHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999996553 332 23455555667778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-ceeeeecccCCC-CC-CCCceEEeecCccCCCCCCC-CCCCCccccccCCC
Q 006207 144 FKQSAKSLEQQIAKEARFYGALIRLQQN-WKVKRQRVAAPA-SG-NEGFTIDLFDNSLYDSAPVS-RPSSLSTIRIDHDS 219 (657)
Q Consensus 144 Lk~gAerLeq~v~re~~F~~eLlrLRqn-WrLkr~R~aGs~-~g-~~GF~Fdv~k~s~~D~a~~~-r~~sls~i~~~~d~ 219 (657)
|++||+||+++++++++||.++++||+| |+|+|.+..+.. +| .+||. +.++.| |+++++.+|.+.+.
T Consensus 192 l~~aa~rL~~~v~~E~~yw~el~~lr~~gW~l~r~~~~~~~~lgv~~G~~---------~ags~f~~~~g~a~lr~~~~~ 262 (467)
T PF10156_consen 192 LKQAAERLEKQVERETRYWSELLRLRQNGWRLFRMPRKRQRSLGVDYGFR---------EAGSEFRRDRGFAVLRRSDDT 262 (467)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHTT---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEeccCCCCceEEEEecCC---------CCCCccCCCCceeeeccCccc
Confidence 9999999999999999999999999997 999965211111 22 33422 233445 66666666653221
Q ss_pred -------CCceEEecCCCCccceeEEEeeeecCCCccccccccCCCCCCCCccccccCCchhhhHhHHHHHHHHHHHHhH
Q 006207 220 -------AGMLAINLPPNSCRSFRFGFLGVQSGDSSKQCSKVKNSCSPRPSKEAKESVNDDECVREKHSLLREVHQAIFY 292 (657)
Q Consensus 220 -------~g~L~V~vP~dl~~~L~~s~i~V~~~~~~k~~~~~~~~~~~~~~~~~~~~~~d~~~~~~w~~~L~~AQ~sLFc 292 (657)
++.+ +.+|..+.++ .||.|. +.+...+.++...-..+.. +.+...+..+|+++|++||++|||
T Consensus 263 g~~~l~~~~~~-~~~~~~~~~~---~~lrV~---I~~~~~~~~d~~~~g~s~~---~~~~~~~~~~~~~~l~~Ar~~lFe 332 (467)
T PF10156_consen 263 GSLELDPSSSL-VSVPSDLKGR---KFLRVR---IQTKIEDEDDGILTGESSL---PRSSKPDDSPIEKRLEEARNTLFE 332 (467)
T ss_dssp ------------------------------------------------------------------HHHHTTTTSTHHHH
T ss_pred CCcccCccccc-ccCCccCCCc---eEEEEE---EEeccccCCCCceecCCCC---cccccccchhHHHHHHHHHHHHHH
Confidence 2334 6678888888 788887 6544433222100000000 002334678999999999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEeeeccceEEEeecCCeeEEEEeccCCCCCCcccccccccccccccccccCCccchhhhhh
Q 006207 293 EQVFDIVNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVNQNVESGILPLDSHDGVKLAEEKD 372 (657)
Q Consensus 293 eELF~~L~REA~ql~s~i~Vtgiren~I~i~l~~g~~L~i~Lv~s~~~~~s~~~~~~d~~~~~~L~l~~~~~~~~~~~~~ 372 (657)
+|||++|+|||+++.+++.. +++|+|+++++||++|+|+|++.+.++.+.....+.
T Consensus 333 eELF~~L~REA~~L~s~~v~--i~~n~I~~~~~~~~~l~ieLv~~~~~~~~~~~~~~~---------------------- 388 (467)
T PF10156_consen 333 EELFYQLNREARQLISYGVR--IRGNKIIIELFPNEKLEIELVSLDDDSSSNSSQESP---------------------- 388 (467)
T ss_dssp HHHHHHHHHHHHHHHS------SSS-------S-S--------S----GGGTSTTTTT----------------------
T ss_pred HHHHHHHHHHHHhcCCCCce--EEcCEEEEecCCCCEEEEEEecCCCCcccccccCCC----------------------
Confidence 99999999999999988622 456999999999999999999887666222211000
Q ss_pred hhhccCCCCCCCcchHHHHHHHHHHHHhhccCCC----CCCcCcccCCCCCCCCCchhHHHHHhhhhhhhhhhHHHHHhh
Q 006207 373 DILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNK----PISTGTRVSGPPTKDGSGLLGHFCLSLAHRIFSNKVHVELEN 448 (657)
Q Consensus 373 ~~~~~~~~~~n~~s~eiyL~q~~~e~~~~~~~e~----l~~~~~~~~g~~a~~~~~LL~~f~~~~~Hr~~s~kv~~~Le~ 448 (657)
. .--.+-.+.++|.+++..++--....+ +....+ .+......||..++..++|+.+..++...|++
T Consensus 389 ---~---~~~~a~~i~~~LrlLL~~~hr~nl~~r~~p~~~~~~~----~~~~~~~~LLrpil~~~~H~~~~~~~~~~L~~ 458 (467)
T PF10156_consen 389 ---I---NDDLADLILHSLRLLLRHAHRQNLRRRSRPPPPLTPR----KRPNPSPSLLRPILGYIRHENLVQRLESILDS 458 (467)
T ss_dssp ---T---T-CTTCHHHHHHHHHHHHHHHHHHHHHHT-------------------------TTSTTTTTTSHHHHHHHHT
T ss_pred ---C---cchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc----ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000123456666666665333221111 111111 23567899999999999999999999999999
Q ss_pred hhcCC
Q 006207 449 AVCGV 453 (657)
Q Consensus 449 ~v~~v 453 (657)
++..+
T Consensus 459 ~~~~l 463 (467)
T PF10156_consen 459 LVREL 463 (467)
T ss_dssp THHHH
T ss_pred HHHHh
Confidence 98765
No 3
>KOG4512 consensus Vitamin D3 receptor interacting protein [Transcription; Signal transduction mechanisms]
Probab=78.85 E-value=0.81 Score=51.66 Aligned_cols=86 Identities=9% Similarity=0.099 Sum_probs=73.0
Q ss_pred CCCCCCccchHHHHHHHH-HHHHHHH--H-HHHHHHhhhccCce----eeccCCCCCCCchhhhchhhhhHHHHHHHHHH
Q 006207 68 SSATTTPWQWQNMVENLQ-FAHQELS--V-IIDLINTVEANDAV----TVAGMTRPKALPNEVLSDLSVSAATKLQCYRH 139 (657)
Q Consensus 68 ~~~qp~~wPW~sV~~~L~-~Al~El~--V-LlDvLsilk~~~y~----~ld~~tkP~p~p~~il~d~avqv~~K~kaL~~ 139 (657)
++.+|.++||.+|.-.+| ..++.+. + ++|+++.++..+|| +.++++-..|.|..+..|.-.++.|+ +|+.
T Consensus 245 qk~~pd~g~~~svnl~~hp~~~~q~g~wq~~Le~aqnvl~ckemfAql~reaIqvq~p~Ph~V~~Nqi~~~~~p--~lQl 322 (625)
T KOG4512|consen 245 QKVTPDAGPWSSVNLYLHPESLNQLGHWQTLLEVAQNVLSCKEMFAQLVREAIQVQEPTPHTVSTNQITQWIWP--ALQL 322 (625)
T ss_pred eecCCccccHHHHHHhcCCccccccchHHHHHHHHHHHHHHHHHHHHHhhhceeecCCCCeeeeccceeeeecH--HHHH
Confidence 578899999999999999 7777776 4 89999999998888 45588888899999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHH
Q 006207 140 LGIYFKQSAKSLEQQI 155 (657)
Q Consensus 140 Aa~iLk~gAerLeq~v 155 (657)
|.+++-++...-.|..
T Consensus 323 ~Islchsa~~k~sQ~a 338 (625)
T KOG4512|consen 323 AISLCHSAQDKQSQRA 338 (625)
T ss_pred HHHHHhhcchhhcCcC
Confidence 9999988875455544
No 4
>COG4911 Uncharacterized conserved protein [Function unknown]
Probab=62.47 E-value=13 Score=34.89 Aligned_cols=57 Identities=32% Similarity=0.554 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccc------cceeeEEEEecCCceEeEEEeeCCCCCCCceEEEEEeeccc
Q 006207 547 ILQQVASQVIRWLHEEALMVGIKAN------RDFLSLSFELDQGETVSLVAHVDPEDMRGCISWWLVMEDGF 612 (657)
Q Consensus 547 ~lqq~a~~~i~wl~~ea~~~g~~~~------~dfl~l~~~~~~~~~~~lva~~~p~~~~~ci~w~l~~~~~~ 612 (657)
-+||++||+ .|+..|+.-+|+-.+ =||+++. ||+-+-|.=.+|-+| |-.|--|+.||
T Consensus 45 ~l~e~e~q~-k~~l~~i~e~G~iird~d~glVDFpa~~----Ng~~~~lCWK~DE~~----imywH~~~EGF 107 (123)
T COG4911 45 ALQEYESQT-KKILDEIIEKGIIIRDIDIGLVDFPAII----NGKPAFLCWKIDEND----IMYWHYMDEGF 107 (123)
T ss_pred HHHHHHHHH-HHHHHHHHHcCceeeccccccccchhhh----CCceEEEEEecCCcc----eeeeecccccc
Confidence 489999995 788899999998542 2555544 899999988887654 77898998898
No 5
>PF13080 DUF3926: Protein of unknown function (DUF3926)
Probab=42.00 E-value=21 Score=28.26 Aligned_cols=27 Identities=41% Similarity=0.431 Sum_probs=22.5
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHHHHhh
Q 006207 538 CDLADLPVIILQQVASQVIRWLHEEALM 565 (657)
Q Consensus 538 c~~~~lp~~~lqq~a~~~i~wl~~ea~~ 565 (657)
|-|++||.=| ||-|.|++|-|.||-..
T Consensus 2 ~IleELP~Pi-qQsAkqmlnILQEELss 28 (44)
T PF13080_consen 2 HILEELPTPI-QQSAKQMLNILQEELSS 28 (44)
T ss_pred chHhhcCchH-HHHHHHHHHHHHHHHHh
Confidence 6788998865 88899999999999643
No 6
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.54 E-value=50 Score=34.76 Aligned_cols=44 Identities=23% Similarity=0.427 Sum_probs=38.4
Q ss_pred cccccceeeEEEEecCCceEeEEEe-eCCCCCCCceEEEEEeecc
Q 006207 568 IKANRDFLSLSFELDQGETVSLVAH-VDPEDMRGCISWWLVMEDG 611 (657)
Q Consensus 568 ~~~~~dfl~l~~~~~~~~~~~lva~-~~p~~~~~ci~w~l~~~~~ 611 (657)
++--+|+|||-.+=-.||.+-.|-. +||+|+.-|.|..+.+...
T Consensus 151 a~wy~dyLGleie~~hgevikfiFTnIdpkdp~~~FsF~vhL~e~ 195 (246)
T KOG4657|consen 151 ASWYNDYLGLEIEAGHGEVIKFIFTNIDPKDPTREFSFTVHLGED 195 (246)
T ss_pred HHHHHHhcCceeeeccCceEEEEEeccCCCCCccceeeEEeeccc
Confidence 3456899999999999999888765 9999999999999998855
No 7
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=30.48 E-value=40 Score=36.20 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=17.2
Q ss_pred ceeeEEEEecCCceEeEEEe
Q 006207 573 DFLSLSFELDQGETVSLVAH 592 (657)
Q Consensus 573 dfl~l~~~~~~~~~~~lva~ 592 (657)
-.=+++|++.+||++|||.-
T Consensus 28 avd~Vsf~i~~ge~~glVGE 47 (268)
T COG4608 28 AVDGVSFSIKEGETLGLVGE 47 (268)
T ss_pred EecceeEEEcCCCEEEEEec
Confidence 34579999999999999975
No 8
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=26.39 E-value=48 Score=35.29 Aligned_cols=19 Identities=32% Similarity=0.676 Sum_probs=16.5
Q ss_pred eeeEEEEecCCceEeEEEe
Q 006207 574 FLSLSFELDQGETVSLVAH 592 (657)
Q Consensus 574 fl~l~~~~~~~~~~~lva~ 592 (657)
+=+++|++.+||++|+|+-
T Consensus 23 l~~VS~~i~~Ge~lgivGe 41 (252)
T COG1124 23 LNNVSLEIERGETLGIVGE 41 (252)
T ss_pred hcceeEEecCCCEEEEEcC
Confidence 4578999999999999963
No 9
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=16.85 E-value=67 Score=35.09 Aligned_cols=13 Identities=54% Similarity=0.902 Sum_probs=11.6
Q ss_pred cCCCceeeeecCc
Q 006207 451 CGVPYLHLVSHPT 463 (657)
Q Consensus 451 ~~vp~l~~~s~pt 463 (657)
.+||-||+|++|-
T Consensus 290 rgVPVLHlI~~pF 302 (338)
T KOG3946|consen 290 RGVPVLHLIPVPF 302 (338)
T ss_pred cCCceEEecCCCC
Confidence 5899999999984
No 10
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=15.06 E-value=1e+02 Score=32.94 Aligned_cols=39 Identities=26% Similarity=0.512 Sum_probs=28.0
Q ss_pred eeeEEEEecCCceEeEEEe--------------eCCCCC-----CCceEEEEEeeccc
Q 006207 574 FLSLSFELDQGETVSLVAH--------------VDPEDM-----RGCISWWLVMEDGF 612 (657)
Q Consensus 574 fl~l~~~~~~~~~~~lva~--------------~~p~~~-----~~ci~w~l~~~~~~ 612 (657)
.=-++|++.+||.||||-| +=|-|+ .|=|+|-+-+.-+|
T Consensus 43 L~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf 100 (249)
T COG1134 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGF 100 (249)
T ss_pred ecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCC
Confidence 3458999999999999987 111111 35678888888887
Done!