Query 006207
Match_columns 657
No_of_seqs 89 out of 91
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 18:52:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006207.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006207hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h63_Q Mediator of RNA polymer 100.0 1.1E-27 3.9E-32 261.6 29.1 232 76-341 28-278 (469)
2 4gwp_B Mediator of RNA polymer 100.0 4.3E-28 1.5E-32 274.5 18.4 337 70-458 196-575 (687)
3 4h62_Q Mediator of RNA polymer 98.5 4.3E-07 1.5E-11 95.2 11.4 148 275-453 46-194 (312)
4 3i9v_7 NADH-quinone oxidoreduc 31.1 1.9E+02 0.0064 26.5 8.1 62 553-615 14-104 (129)
5 1vyk_A Oxygen-evolving enhance 18.7 5.1E+02 0.018 24.2 9.0 109 15-168 26-140 (149)
6 3uc0_A Envelope protein; dengu 14.2 58 0.002 31.3 1.3 22 498-519 19-41 (165)
7 4gh9_A Polymerase cofactor VP3 13.5 1.1E+02 0.0038 28.3 2.9 22 567-589 123-144 (146)
8 3gb0_A Peptidase T; NP_980509. 13.5 1.8E+02 0.0062 29.4 4.9 41 554-594 27-80 (373)
9 2acm_A Mucin-1; auto-catalytic 13.3 1.4E+02 0.0048 24.4 3.1 38 535-578 22-59 (66)
10 1xmb_A IAA-amino acid hydrolas 11.4 2.4E+02 0.0083 29.3 5.2 43 554-596 49-95 (418)
No 1
>4h63_Q Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.1e-27 Score=261.63 Aligned_cols=232 Identities=13% Similarity=0.174 Sum_probs=166.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhccCceeec-c--------------CCCCCCCchhhhchhhhhHHHHHHHHHHH
Q 006207 76 QWQNMVENLQFAHQELSVIIDLINTVEANDAVTVA-G--------------MTRPKALPNEVLSDLSVSAATKLQCYRHL 140 (657)
Q Consensus 76 PW~sV~~~L~~Al~El~VLlDvLsilk~~~y~~ld-~--------------~tkP~p~p~~il~d~avqv~~K~kaL~~A 140 (657)
..++|.++|++|++|++.++|+++++.++.-+.-. . ...+.+.|+....|.++..|||+++|++|
T Consensus 28 ~R~Eml~~i~~A~nE~slaLDfvSLLLS~~~p~~~~tmSP~Lk~~vp~gSL~~d~v~~p~~~~~~~~vs~GwKl~sL~~A 107 (469)
T 4h63_Q 28 YKKELIEQIMIAQTECSLALDMTSLLLSKFKENSIETISPFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKEKSLTSS 107 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSGGGGGSCHHHHHHSCTTCEEEEECCCCCCCSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccccCCCCccCCCCCCCCCccchHHHHHHHHHHHHHHHHH
Confidence 45999999999999999999999999875433211 0 01123446667788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cceeeeecccCCCCC-CCCceEEeecCccCCCCCCCCCCCCccccccCC
Q 006207 141 GIYFKQSAKSLEQQIAKEARFYGALIRLQQ-NWKVKRQRVAAPASG-NEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHD 218 (657)
Q Consensus 141 a~iLk~gAerLeq~v~re~~F~~eLlrLRq-nWrLkr~R~aGs~~g-~~GF~Fdv~k~s~~D~a~~~r~~sls~i~~~~d 218 (657)
+++|++||+||++++++|++||.+++++|+ +|+|+|.|... .+| ++||. |.+ +++++.+|.+.
T Consensus 108 a~~lk~AA~rLe~ev~~E~kYW~~il~vr~~gW~l~r~r~~r-~lGVkyGf~---------es~----s~glA~lR~~~- 172 (469)
T 4h63_Q 108 CKFLFEAKERLTSVVETEHEYYTELVKVKEASWPLFNSQGSN-HLSVQYSCL---------GGI----SLGLGLIRMKP- 172 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEECTTTC-SEEECCSCS---------CCS----SCCCEEEEECT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeccCCCCc-ccccccCcC---------CCC----CcceeeeecCC-
Confidence 999999999999999999999999999998 59999985332 234 55643 222 25788888643
Q ss_pred CCCceEEecCCCCccceeEEEeeeecCCCc-cccccccCCCCCCCCccccccCCchhhhHhHHHHHHHHHHHHhHHHHHH
Q 006207 219 SAGMLAINLPPNSCRSFRFGFLGVQSGDSS-KQCSKVKNSCSPRPSKEAKESVNDDECVREKHSLLREVHQAIFYEQVFD 297 (657)
Q Consensus 219 ~~g~L~V~vP~dl~~~L~~s~i~V~~~~~~-k~~~~~~~~~~~~~~~~~~~~~~d~~~~~~w~~~L~~AQ~sLFceELF~ 297 (657)
..+.+.+ .|....+. .++.|. +. ++...++....+.+.. .....|...|++||++|||+|||+
T Consensus 173 ~~~~~~~-~~~~~~~~---~~lrV~---I~~~d~~~~g~S~~~~~~~---------~~~~~i~~~I~~AR~~IFEeELF~ 236 (469)
T 4h63_Q 173 ESKSFEV-QSSLLYSQ---AALKIS---ILNKDRDEIGSSTWSWPSQ---------NCNSVLLKDIYKLQEILFEMDIWN 236 (469)
T ss_dssp TTSCEEE-ECSCSCSC---CEEEEE---EECTTCCEEEEEECCCCCC---------CCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceee-ccCCCCCc---eEEEEE---EEecCCceeeeecCCCCCC---------CCcchHHHHHHHHHHHHHHHHHHH
Confidence 3344433 44444444 334443 21 2222111111111111 123579999999999999999999
Q ss_pred HHHHHHhhcCCce-EEeeeccceEEEeecCCeeEEEEeccCCCCC
Q 006207 298 IVNREAFKQSLGV-NVTGIRENYLQLGIGLGISIFLSLIPSNQGD 341 (657)
Q Consensus 298 ~L~REA~ql~s~i-~Vtgiren~I~i~l~~g~~L~i~Lv~s~~~~ 341 (657)
+|+|||.++.++. .| ++|.|.++++++.++.|+|+..+.+.
T Consensus 237 eL~REA~~L~s~gV~~---~~~~I~iel~~~~~i~ieLv~l~~~~ 278 (469)
T 4h63_Q 237 SLLQEAQSCGNQGVNF---TGDEILVPISDDHVVRITLETSSKNT 278 (469)
T ss_dssp HHHHHHHHCCTTCCEE---CSSEEEEECSTTCEEEEEEECCC---
T ss_pred HHHHHHHhhccCceEE---ecCEEEEEcCCCCEEEEEEecCCCcc
Confidence 9999999998875 54 57999999999999999999887665
No 2
>4gwp_B Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_B 3rj1_B
Probab=99.95 E-value=4.3e-28 Score=274.46 Aligned_cols=337 Identities=11% Similarity=0.114 Sum_probs=223.5
Q ss_pred CCCCccch-HHHHHHHHHHHHHHHHHHHHHHhhhccCceeec--------------------cCCCCCCCchhhhchhhh
Q 006207 70 ATTTPWQW-QNMVENLQFAHQELSVIIDLINTVEANDAVTVA--------------------GMTRPKALPNEVLSDLSV 128 (657)
Q Consensus 70 ~qp~~wPW-~sV~~~L~~Al~El~VLlDvLsilk~~~y~~ld--------------------~~tkP~p~p~~il~d~av 128 (657)
.+...|.+ .+|.++|+.|++|++.++|++++|.++..+..+ .+.+|++.+.+.+.+.++
T Consensus 196 t~E~l~k~R~Eml~~l~~A~nE~slALDfVSLLLSk~~P~~A~sSmSP~Lk~~vp~GSL~ad~v~~p~~~~s~~~~~~~v 275 (687)
T 4gwp_B 196 TQEQFVKRRRDMLEHINLAMNESSLALEFVSLLLSSVKESTGMSSMSPFLRKVVKPSSLNSDKIPYVAPTKKEYIELDIL 275 (687)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHTTSHHHHTCCCCCCCCCCCHHHHHHHHHSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccChhhhccCCCCccccCcCCCCCCChHHHHHHHHH
Confidence 34467788 889999999999999999999999986544211 234455556677778899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cceeeeecc---cCCCCC-CCCceEEeecCccCCCCC
Q 006207 129 SAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQ-NWKVKRQRV---AAPASG-NEGFTIDLFDNSLYDSAP 203 (657)
Q Consensus 129 qv~~K~kaL~~Aa~iLk~gAerLeq~v~re~~F~~eLlrLRq-nWrLkr~R~---aGs~~g-~~GF~Fdv~k~s~~D~a~ 203 (657)
..|||.++|++|+++|++||++|++++++|++||.+++++++ +|++.|.|. ....+| ++||. |+++
T Consensus 276 s~GwKl~aL~~aa~~l~~AA~rLe~ev~~E~kYW~~il~v~~~~w~i~r~r~~~~~~~~lGVkyGf~---------eSgs 346 (687)
T 4gwp_B 276 NKGWKLQSLNESKDLLRASFNKLSSILQNEHDYWNKIMQSISNKDVIFKIRDRTSGQKLLAIKYGYE---------DSGS 346 (687)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSSCCCEEEESSCSSSSEEEECCCS---------CCSS
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeecCCCCCCCceeEEeccCC---------CCch
Confidence 999999999999999999999999999999999999999886 888877732 222334 55644 5667
Q ss_pred CCC-CCCCccccccCCCCCceEE-----------ecCCCCccceeEEEeeeec--CC-CccccccccCCCCCCCCccccc
Q 006207 204 VSR-PSSLSTIRIDHDSAGMLAI-----------NLPPNSCRSFRFGFLGVQS--GD-SSKQCSKVKNSCSPRPSKEAKE 268 (657)
Q Consensus 204 ~~r-~~sls~i~~~~d~~g~L~V-----------~vP~dl~~~L~~s~i~V~~--~~-~~k~~~~~~~~~~~~~~~~~~~ 268 (657)
.|| +++++.+|.+.+ .+.+.+ .++....++++|....... ++ ...+.+. +..+ .
T Consensus 347 ~Fr~drglA~LR~~~d-~~~l~l~P~s~~~~~~~~~~~~~~k~lRVrI~~k~~~e~d~~lsG~S~---~~~~--~----- 415 (687)
T 4gwp_B 347 TYKHDRGIANIRNNIE-SQNLDLIPHSSSVFKGTDFVHSVKKFLRVRIFTKIESEDDYILSGESV---MDRD--S----- 415 (687)
T ss_dssp CCCSSCCCEEEECTTS-CEEEECSCC------CCCSSCSSCEECCCCEEEECTTSCSCCEEEECC---CCCS--C-----
T ss_pred hhccccceeeeeccCC-CCceeecccccccccccccccCCCceEEEEEEeeccCCCCceEecccc---CCcc--c-----
Confidence 787 699999997443 333332 2344445555543332210 11 1111111 1111 1
Q ss_pred cCCchhhhHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcCCce-EEeeeccceEEEeecCCeeEEEEeccCCCCCCccccc
Q 006207 269 SVNDDECVREKHSLLREVHQAIFYEQVFDIVNREAFKQSLGV-NVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSW 347 (657)
Q Consensus 269 ~~~d~~~~~~w~~~L~~AQ~sLFceELF~~L~REA~ql~s~i-~Vtgiren~I~i~l~~g~~L~i~Lv~s~~~~~s~~~~ 347 (657)
..+......++.+|++||++|||+|||++|.|||.+|.++. .| +++.|.+.++++..|.|+|++.+.+......
T Consensus 416 -~~~~~~~~~ie~~I~~AR~~IFEEELF~eL~REAr~L~s~gV~v---~~~~i~i~~~~~~~i~ielv~ld~~~~~~~~- 490 (687)
T 4gwp_B 416 -ESEEAETKDIRKQIQLLKKIIFEKELMYQIKKECALLISYGVSI---ENENKVIIELPNEKFEIELLSLDDDSIVNHE- 490 (687)
T ss_dssp -SSCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCB---TTTBCEEEETTTTEEEEECCTTCSEECCCCC-
T ss_pred -ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCceeE---ecCeeEEecCCCcEEEEEeccCCcccccccc-
Confidence 11112346799999999999999999999999999998876 54 5699999999999999999976543211000
Q ss_pred ccccccccccccccCCccchhhhhhhhhccCCCCCCCcchHHHHHHHHHHHHhhccCCCCCCcCcccCCCCCCCCCchhH
Q 006207 348 VNQNVESGILPLDSHDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPISTGTRVSGPPTKDGSGLLG 427 (657)
Q Consensus 348 ~~d~~~~~~L~l~~~~~~~~~~~~~~~~~~~~~~~n~~s~eiyL~q~~~e~~~~~~~e~l~~~~~~~~g~~a~~~~~LL~ 427 (657)
.+ .+ +.+-..+.- -..++.+-|.+.+|.++..+..-.+....+++ .....||.
T Consensus 491 -~~------~s--~~~d~~A~l-------------I~~~LrLLL~~~hr~nlrrR~~~p~~lt~~~~-----~~~~~LLR 543 (687)
T 4gwp_B 491 -QD------LP--KINDKRANL-------------MLVMLRLLLVVIFKKTLRSRISSPHGLINLNV-----DDDILIIR 543 (687)
T ss_dssp -CC------CC--CHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHSTTCCCSCCG-----GGTTTTHH
T ss_pred -cc------CC--CCCcHHHHH-------------HHHHHHHHHHHHHHHHHhccCCCCCcccCCCC-----CCCcchHH
Confidence 00 00 000000000 01234555555555544443333333332222 22356999
Q ss_pred HHHHhhhhhhhhhhHHHHHhhhhcCC-Cceee
Q 006207 428 HFCLSLAHRIFSNKVHVELENAVCGV-PYLHL 458 (657)
Q Consensus 428 ~f~~~~~Hr~~s~kv~~~Le~~v~~v-p~l~~ 458 (657)
.++.-.+|+.....+...|.+.+..+ +..-+
T Consensus 544 Pil~~lrH~~~~~~l~~~l~~~v~~~~~~a~l 575 (687)
T 4gwp_B 544 PILGKVRFANYKLLLKKIIKDYVLDIVPGSSI 575 (687)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSSSCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 99999999999999999998877655 44443
No 3
>4h62_Q Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=98.50 E-value=4.3e-07 Score=95.22 Aligned_cols=148 Identities=9% Similarity=0.053 Sum_probs=97.4
Q ss_pred hhHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcCCce-EEeeeccceEEEeecCCeeEEEEeccCCCCCCccccccccccc
Q 006207 275 CVREKHSLLREVHQAIFYEQVFDIVNREAFKQSLGV-NVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVNQNVE 353 (657)
Q Consensus 275 ~~~~w~~~L~~AQ~sLFceELF~~L~REA~ql~s~i-~Vtgiren~I~i~l~~g~~L~i~Lv~s~~~~~s~~~~~~d~~~ 353 (657)
...++.+.+++|+++||++|||++|.|||..|.++. .+ +++.|.+.++++..+.|+|+.-+.++.+.....
T Consensus 46 ~~~~I~~~I~~AR~~iFEeELf~eL~REAr~L~sygV~~---~~~~i~i~~~~~~~i~ielv~ld~~~~~~~~~~----- 117 (312)
T 4h62_Q 46 ETKDIRKQIQLLKKIIFEKELMYQIKKECALLISYGVSI---ENENKVIIELPNEKFEIELLSLDDDSIVNHEQD----- 117 (312)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGTEEE---EETTEEEEECSSEEEEEEEECSSCC-------------
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceEE---ecCeEEEEcCCCCEEEEEeecCCCccccccccc-----
Confidence 446799999999999999999999999999998876 54 458899999999999999997664331110000
Q ss_pred ccccccccCCccchhhhhhhhhccCCCCCCCcchHHHHHHHHHHHHhhccCCCCCCcCcccCCCCCCCCCchhHHHHHhh
Q 006207 354 SGILPLDSHDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPISTGTRVSGPPTKDGSGLLGHFCLSL 433 (657)
Q Consensus 354 ~~~L~l~~~~~~~~~~~~~~~~~~~~~~~n~~s~eiyL~q~~~e~~~~~~~e~l~~~~~~~~g~~a~~~~~LL~~f~~~~ 433 (657)
.+ +.+-..++-. ..++.+-|....+.++..+...++..+.+++ .....||..+++-.
T Consensus 118 ---~~--~~~d~~A~~I-------------~~~LrLLL~~aHr~nlr~R~~~P~~~tk~~~-----~~~~~LLRPil~~l 174 (312)
T 4h62_Q 118 ---LP--KINDKRANLM-------------LVMLRLLLVVIFKKTLRSRISSPHGLINLNV-----DDDILIIRPILGKV 174 (312)
T ss_dssp ---CC--CTTHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHTTTSSCCCCCH-----HHHCCSHHHHHHHH
T ss_pred ---cC--CcchHHHHHH-------------HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC-----CCCcccHHHHHHHH
Confidence 00 0011111100 1244555555555555444333333433332 22455999999999
Q ss_pred hhhhhhhhHHHHHhhhhcCC
Q 006207 434 AHRIFSNKVHVELENAVCGV 453 (657)
Q Consensus 434 ~Hr~~s~kv~~~Le~~v~~v 453 (657)
+|......+...|++++..+
T Consensus 175 rH~~~~~~l~~~l~~~vl~i 194 (312)
T 4h62_Q 175 RFANYKLLLKKIIKDYVLDI 194 (312)
T ss_dssp HHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999877
No 4
>3i9v_7 NADH-quinone oxidoreductase subunit 15; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_7* 2fug_7* 3iam_7* 3ias_7* 3m9s_7*
Probab=31.11 E-value=1.9e+02 Score=26.48 Aligned_cols=62 Identities=27% Similarity=0.456 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhhcccccc--ce-----------------eeEEEEecCCceEeEEEeeCCCC----------CCCceE
Q 006207 553 SQVIRWLHEEALMVGIKANR--DF-----------------LSLSFELDQGETVSLVAHVDPED----------MRGCIS 603 (657)
Q Consensus 553 ~~~i~wl~~ea~~~g~~~~~--df-----------------l~l~~~~~~~~~~~lva~~~p~~----------~~~ci~ 603 (657)
-|++.||.|+|..=|....+ || .+.++.-+.||-+ |||+|.|-- .++-+-
T Consensus 14 vell~Wl~eyA~~~g~~FekeaDFPDyIYRMeRPydLPTtvMsvsLS~~~geP~-l~a~vSprha~lK~islr~~g~h~h 92 (129)
T 3i9v_7 14 VELLSWMREYAQAKGVRFEKEADFPDFIYRMERPYDLPTTIMTASLSDGLGEPF-LLADVSPRHAKLKRIGLRLPRAHIH 92 (129)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECHHHHSCCSSCCCCSCSEEEEEEECSSSCEE-EEEEECCSSSSSCCEEEEETTTTEE
T ss_pred HHHHHHHHHHHHhcCCceeecccccHHHHhhcCcccCCceeEEEEeccCCCCee-EEEecCcchhhhcceEEecCCCcce
Confidence 38999999999988876654 44 5677777778876 788888864 456778
Q ss_pred EEEEeecccccc
Q 006207 604 WWLVMEDGFAAE 615 (657)
Q Consensus 604 w~l~~~~~~~~e 615 (657)
|-+..+++-+-.
T Consensus 93 wh~h~e~g~Gl~ 104 (129)
T 3i9v_7 93 LHAHYEPGKGLV 104 (129)
T ss_dssp EEEEEETTTEEE
T ss_pred eeeeecCCCccc
Confidence 888877554333
No 5
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=18.67 E-value=5.1e+02 Score=24.24 Aligned_cols=109 Identities=12% Similarity=0.200 Sum_probs=65.1
Q ss_pred cchhcccccccccCCCCCChhHHHHHHhccc-cccccccchhhhhhccccccCCCCCCCCccchHHHHHHHHHHHHHHHH
Q 006207 15 KRLDAIEETGAERFPPDVGYDEKRESLIRRI-DFAWAVEKDDNKRLKKSSKESSSSATTTPWQWQNMVENLQFAHQELSV 93 (657)
Q Consensus 15 ~~IqeI~~DG~EiY~~pls~sEkl~klaqRI-DFsk~~~~d~kk~~~~~~Ee~e~~~qp~~wPW~sV~~~L~~Al~El~V 93 (657)
.+=.++..+-.-.|.+|+|..|-.+++=+.. ++. +-+.-- ..--|..|++.||.-.++|..
T Consensus 26 ard~~l~~~k~~f~~~~l~~~~a~~rIk~~a~~i~-----~vk~lI-------------~k~~W~~vrn~LR~~~~~Lr~ 87 (149)
T 1vyk_A 26 ARDGTLPYTKDRFYLQPLPPTEAAQRAKVSASEIL-----NVKQFI-------------DRKAWPSLQNDLRLRASYLRY 87 (149)
T ss_dssp --------CTTCCEECCCCHHHHHHHHHHHHHHHH-----TTHHHH-------------HTTCHHHHHHHHHHHHHHHHH
T ss_pred hhccCccccccccccCCCCHHHHHHHHHHHHHHHH-----HHHHHh-------------hhccHHHHHHHHHHhHHHHHH
Confidence 3344444555567889999888776542211 111 000000 011499999999999999886
Q ss_pred HHHHHHhhhccCceeeccCCCCCCCchhhhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Q 006207 94 IIDLINTVEANDAVTVAGMTRPKALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIA-----KEARFYGALIRL 168 (657)
Q Consensus 94 LlDvLsilk~~~y~~ld~~tkP~p~p~~il~d~avqv~~K~kaL~~Aa~iLk~gAerLeq~v~-----re~~F~~eLlrL 168 (657)
=+.-|. . ++|+ ..++++...++.|....++|...+. ....+|.+....
T Consensus 88 Dl~~li--~----------slp~---------------~~kk~l~~La~~Lf~~le~LD~AAr~kd~~~a~~~Y~~t~~~ 140 (149)
T 1vyk_A 88 DLKTVI--S----------AKPK---------------DEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSN 140 (149)
T ss_dssp HHHHHH--H----------HSCH---------------HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHH--H----------hCCH---------------HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 544333 2 2343 5688889999999999888888872 337788877653
No 6
>3uc0_A Envelope protein; dengue antibody membrane fusion, viral protein-immune system; 2.71A {Dengue virus 4}
Probab=14.17 E-value=58 Score=31.30 Aligned_cols=22 Identities=18% Similarity=0.573 Sum_probs=17.9
Q ss_pred eeeeEEe-ccccceeccCCCCcc
Q 006207 498 FRTNVVV-NDDCIHVEGEGTPNV 519 (657)
Q Consensus 498 ~~~~~v~-~~~~~~~~~~~~p~~ 519 (657)
=|..||| .++|++|+++|-|+|
T Consensus 19 TWVdvVLE~GgCVTI~A~dKPSv 41 (165)
T 3uc0_A 19 AWVDLVLEHGGCVTTMAQGKPTL 41 (165)
T ss_dssp CCEEEEEEBTCEEEEEETTEEEE
T ss_pred EEEEEEEeCCCEEEEEeCCCcee
Confidence 3566666 578999999999997
No 7
>4gh9_A Polymerase cofactor VP35; viral polymerase, interferon inhibition, double stranded VIR viral protein,RNA binding protein; 1.65A {Marburg virus}
Probab=13.51 E-value=1.1e+02 Score=28.35 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=17.8
Q ss_pred ccccccceeeEEEEecCCceEeE
Q 006207 567 GIKANRDFLSLSFELDQGETVSL 589 (657)
Q Consensus 567 g~~~~~dfl~l~~~~~~~~~~~l 589 (657)
..+..|-+.|+ |.+++|+|+||
T Consensus 123 sPkIDrGWvci-f~~q~gktl~l 144 (146)
T 4gh9_A 123 NPTIDKGWVCV-YSSEQGETRAL 144 (146)
T ss_dssp SCCGGGTEEEE-EECTTSCEEEE
T ss_pred CCccccceEEE-EEccCCceecc
Confidence 36778888886 78899999887
No 8
>3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M structural genomics, joint center for structural genomics; 2.04A {Bacillus cereus atcc 10987}
Probab=13.45 E-value=1.8e+02 Score=29.44 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhhcccccccee---------eEEEEec----CCceEeEEEeeC
Q 006207 554 QVIRWLHEEALMVGIKANRDFL---------SLSFELD----QGETVSLVAHVD 594 (657)
Q Consensus 554 ~~i~wl~~ea~~~g~~~~~dfl---------~l~~~~~----~~~~~~lva~~~ 594 (657)
++..||.++.-.+|+++.+|.. ++...+. .|.+|.|-||.|
T Consensus 27 ~~~~~l~~~l~~~G~~v~~~~~~~~~~~~~~nv~a~~~g~~~~~~~v~l~aH~D 80 (373)
T 3gb0_A 27 EICKVLTKKFTDLGVEVFEDDTMAVTGHGAGNLICTLPATKDGVDTIYFTSHMD 80 (373)
T ss_dssp HHHHHHHHHHHHTTCEEEECSCHHHHCCSSCCEEEEECCSSTTCCCEEEEEECC
T ss_pred HHHHHHHHHHHHCCCEEEEeccccccCCCceeEEEEecCCCCCCCEEEEEEECc
Confidence 4455566666668999999874 5777774 356899999977
No 9
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=13.30 E-value=1.4e+02 Score=24.44 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=29.7
Q ss_pred ccccCCCCchHHHHHHHHHHHHHHHHHHHhhhccccccceeeEE
Q 006207 535 KYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLS 578 (657)
Q Consensus 535 ~~~c~~~~lp~~~lqq~a~~~i~wl~~ea~~~g~~~~~dfl~l~ 578 (657)
-.||.|+|.-.---|..-..|+ ++.+-|--.+|||+|+
T Consensus 22 qFnSSLEdPst~YYqeLqr~is------~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 22 QFNSSLEDPSTDYYQELQRDIS------EMFLQIYKQGGFLGLS 59 (66)
T ss_dssp CCCGGGGCTTSHHHHHHHHHHH------HHHHHHCTTTTEEEEE
T ss_pred hhhhcccCcchHHHHHHHHHHH------HHHHHHHccCCeeeee
Confidence 4899999999888887766665 3455566778999987
No 10
>1xmb_A IAA-amino acid hydrolase homolog 2; structural genomics, protein structure initiative, CESG AT5G56660, ILL2, indole-3-acetic acid, auxin; 2.00A {Arabidopsis thaliana} SCOP: c.56.5.4 d.58.19.1 PDB: 2q43_A
Probab=11.45 E-value=2.4e+02 Score=29.25 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhhccccccce--eeEEEEecCC--ceEeEEEeeCCC
Q 006207 554 QVIRWLHEEALMVGIKANRDF--LSLSFELDQG--ETVSLVAHVDPE 596 (657)
Q Consensus 554 ~~i~wl~~ea~~~g~~~~~df--l~l~~~~~~~--~~~~lva~~~p~ 596 (657)
++..||.+..-.+|+++.+|. -++...+..+ .+|.|.||+|==
T Consensus 49 ~~~~~l~~~l~~~G~~v~~~~~~~~l~a~~~~~~~~~i~l~aH~D~v 95 (418)
T 1xmb_A 49 ETSKLIRSELELIGIKYRYPVAITGVIGYIGTGEPPFVALRADMDAL 95 (418)
T ss_dssp HHHHHHHHHHHHHTCCEEEEETTTEEEEEEESSSSCEEEEEEECCCB
T ss_pred HHHHHHHHHHHHcCCeeEeccCCcEEEEEEcCCCCCEEEEEeccccc
Confidence 344555565566799888874 4677777654 389999998843
Done!