Query 006207
Match_columns 657
No_of_seqs 89 out of 91
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 18:53:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006207.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006207hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2grea2 c.56.5.4 (A:3-73,A:187 38.8 6.5 0.00047 36.6 2.4 50 553-602 24-77 (233)
2 d2fug71 d.82.2.2 (7:3-129) NAD 17.4 96 0.007 26.2 5.6 57 554-611 13-98 (127)
3 d2fvga2 c.56.5.4 (A:1-64,A:149 12.5 77 0.0056 27.8 4.0 41 554-594 18-62 (255)
4 d1vpla_ c.37.1.12 (A:) Putativ 11.2 58 0.0043 29.9 2.7 17 576-592 20-36 (238)
5 d1l2ta_ c.37.1.12 (A:) MJ0796 10.6 63 0.0046 29.7 2.8 17 576-592 23-39 (230)
6 d1cg2a1 c.56.5.4 (A:26-213,A:3 10.5 1.5E+02 0.011 27.0 5.6 41 554-594 40-89 (276)
7 d1vhea2 c.56.5.4 (A:3-72,A:163 10.1 1.4E+02 0.01 26.7 5.0 42 554-595 24-69 (275)
8 d1nzea_ a.24.18.1 (A:) Oxygen- 10.1 4E+02 0.029 21.3 9.6 67 76-169 33-104 (112)
9 d1b0ua_ c.37.1.12 (A:) ATP-bin 9.5 72 0.0053 29.6 2.7 17 576-592 20-36 (258)
10 d2i0za1 c.3.1.8 (A:1-192,A:362 9.1 1.6E+02 0.012 25.1 4.9 40 552-591 109-148 (251)
No 1
>d2grea2 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptidase YhfE {Bacillus cereus [TaxId: 1396]}
Probab=38.76 E-value=6.5 Score=36.61 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhhcccccccee-eEEEEec---CCceEeEEEeeCCCCCCCce
Q 006207 553 SQVIRWLHEEALMVGIKANRDFL-SLSFELD---QGETVSLVAHVDPEDMRGCI 602 (657)
Q Consensus 553 ~~~i~wl~~ea~~~g~~~~~dfl-~l~~~~~---~~~~~~lva~~~p~~~~~ci 602 (657)
.+++.|+.++...+|+++.+|-. ++.-.+. .+..+-++||+|=+|..||.
T Consensus 24 ~~~~~~i~~~l~~~G~~~~~d~~gniia~~~G~~~~~~i~~~aH~Dt~dk~g~a 77 (233)
T d2grea2 24 AKIINFIENYVSEWNVETKRNNKGALILTVKGKNDAQHRLLTAHVDTLDKVSVA 77 (233)
T ss_dssp HHHHHHHHHHTTTSSSEEEECSSSCEEEEECCSEEEEEEEEEEECCBCTHHHHH
T ss_pred HHHHHHHHHHHHHcCCeEEEecCCCEEEEecCCCccccEEEEeccCccccCcHH
Confidence 46789999999999999999987 4555553 23368899999999988884
No 2
>d2fug71 d.82.2.2 (7:3-129) NADH-quinone oxidoreductase subunit 15, Nqo15 {Thermus thermophilus [TaxId: 274]}
Probab=17.35 E-value=96 Score=26.17 Aligned_cols=57 Identities=30% Similarity=0.546 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhhcccccc--ce-----------------eeEEEEecCCceEeEEEeeCCCCC----------CCceEE
Q 006207 554 QVIRWLHEEALMVGIKANR--DF-----------------LSLSFELDQGETVSLVAHVDPEDM----------RGCISW 604 (657)
Q Consensus 554 ~~i~wl~~ea~~~g~~~~~--df-----------------l~l~~~~~~~~~~~lva~~~p~~~----------~~ci~w 604 (657)
|++.|+.|+|..=|+.... || .+.++...-|+-+ |+|.|.|-.+ .+-+-|
T Consensus 13 ell~Wm~e~A~~rGv~feKeaDFPDyIYRMERpYdLPTTvMs~sls~~~G~p~-l~a~vSPRHa~lK~I~lr~~g~h~h~ 91 (127)
T d2fug71 13 ELLSWMREYAQAKGVRFEKEADFPDFIYRMERPYDLPTTIMTASLSDGLGEPF-LLADVSPRHAKLKRIGLRLPRAHIHL 91 (127)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEECHHHHTCCSSCCCCSCSEEEEEEECSSCCEE-EEEEECCTTCBSCCEEEEETTTTEEE
T ss_pred HHHHHHHHHHHhcCCcceecccccHHHHhccccccCChhheEEeeccCCCCEE-EEEecCccceehheeEEecCCchhhe
Confidence 7999999999887775543 44 5677777778875 7788889754 567788
Q ss_pred EEEeecc
Q 006207 605 WLVMEDG 611 (657)
Q Consensus 605 ~l~~~~~ 611 (657)
-|+.+++
T Consensus 92 hlh~~~G 98 (127)
T d2fug71 92 HAHYEPG 98 (127)
T ss_dssp EEEEETT
T ss_pred eeeecCC
Confidence 8887754
No 3
>d2fvga2 c.56.5.4 (A:1-64,A:149-339) Endoglucanase TM1049 {Thermotoga maritima [TaxId: 2336]}
Probab=12.55 E-value=77 Score=27.80 Aligned_cols=41 Identities=17% Similarity=0.146 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhhcccccccee-eEEEEec---CCceEeEEEeeC
Q 006207 554 QVIRWLHEEALMVGIKANRDFL-SLSFELD---QGETVSLVAHVD 594 (657)
Q Consensus 554 ~~i~wl~~ea~~~g~~~~~dfl-~l~~~~~---~~~~~~lva~~~ 594 (657)
+|..||.++...+|.++.+|=+ .++-.+. .+..+-|.||+|
T Consensus 18 ~v~~~~~~~l~~~g~~v~~d~~gNii~~~~G~~~~~~i~l~aH~D 62 (255)
T d2fvga2 18 KVRDFIKSKIEGLVDNLYTDVLGNLIALKRGRDSSKKLLVSAHMD 62 (255)
T ss_dssp HHHHHHHHHHGGGSSEEEECTTSCEEEEECCSEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHcCCeEEEeCCCCEEEEecCCCCCCceEEEeccc
Confidence 5678888888889999998843 5555553 244688999977
No 4
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}
Probab=11.17 E-value=58 Score=29.91 Aligned_cols=17 Identities=35% Similarity=0.780 Sum_probs=15.6
Q ss_pred eEEEEecCCceEeEEEe
Q 006207 576 SLSFELDQGETVSLVAH 592 (657)
Q Consensus 576 ~l~~~~~~~~~~~lva~ 592 (657)
.++|++.+||++|||..
T Consensus 20 ~vs~~v~~Gei~glvG~ 36 (238)
T d1vpla_ 20 GISFEIEEGEIFGLIGP 36 (238)
T ss_dssp EEEEEECTTCEEEEECC
T ss_pred cceeEEcCCCEEEEECC
Confidence 68999999999999974
No 5
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=10.56 E-value=63 Score=29.70 Aligned_cols=17 Identities=24% Similarity=0.567 Sum_probs=14.9
Q ss_pred eEEEEecCCceEeEEEe
Q 006207 576 SLSFELDQGETVSLVAH 592 (657)
Q Consensus 576 ~l~~~~~~~~~~~lva~ 592 (657)
.++|++++||+++|+..
T Consensus 23 ~isl~i~~Ge~~~iiG~ 39 (230)
T d1l2ta_ 23 NVNLNIKEGEFVSIMGP 39 (230)
T ss_dssp EEEEEECTTCEEEEECS
T ss_pred ceEEEEcCCCEEEEECC
Confidence 57999999999999753
No 6
>d1cg2a1 c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2, catalytic domain {Pseudomonas sp., strain rs-16 [TaxId: 306]}
Probab=10.53 E-value=1.5e+02 Score=27.05 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhhccccccce---------eeEEEEecCCceEeEEEeeC
Q 006207 554 QVIRWLHEEALMVGIKANRDF---------LSLSFELDQGETVSLVAHVD 594 (657)
Q Consensus 554 ~~i~wl~~ea~~~g~~~~~df---------l~l~~~~~~~~~~~lva~~~ 594 (657)
+++.||.++--.+|.++.++. +-.++.-..+.+|-|.+|+|
T Consensus 40 ~~a~~l~~~l~~lG~~~~~~~~~~~~~~~nv~a~~~g~~~~~vll~~H~D 89 (276)
T d1cg2a1 40 AAGNFLEAELKNLGFTVTRSKSAGLVVGDNIVGKIKGRGGKNLLLMSHMD 89 (276)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSTTCCSEEEEEEEECSSCCCEEEEEECC
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCCCcCCEEEEEECCCCCCeEEEEeccc
Confidence 578888888888999988753 33344456678899999988
No 7
>d1vhea2 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein YsdC, catalytic domain {Bacillus subtilis [TaxId: 1423]}
Probab=10.13 E-value=1.4e+02 Score=26.65 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhhcccccccee-eEEEEe---cCCceEeEEEeeCC
Q 006207 554 QVIRWLHEEALMVGIKANRDFL-SLSFEL---DQGETVSLVAHVDP 595 (657)
Q Consensus 554 ~~i~wl~~ea~~~g~~~~~dfl-~l~~~~---~~~~~~~lva~~~p 595 (657)
+|..||.+++-.+|.++.+|=. .|.=.+ +.+.++-|.||.|=
T Consensus 24 ~v~~~l~~~l~~~g~~~~~D~~gN~i~~~~g~~~~~~i~l~~H~D~ 69 (275)
T d1vhea2 24 EVRQVMKSYIEPFADEVTTDRLGSLIAKKTGAENGPKIMIAGHLDE 69 (275)
T ss_dssp HHHHHHHHHHGGGCSEEEECTTCCEEEEEESSTTSCEEEEEEECCC
T ss_pred HHHHHHHHHHHHcCCEEEEeCCCcEEEEecCCCCCCceeeeccccc
Confidence 4556666666778999999855 565556 45667999999773
No 8
>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=10.07 E-value=4e+02 Score=21.35 Aligned_cols=67 Identities=15% Similarity=0.346 Sum_probs=47.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhccCceeeccCCCCCCCchhhhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006207 76 QWQNMVENLQFAHQELSVIIDLINTVEANDAVTVAGMTRPKALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQI 155 (657)
Q Consensus 76 PW~sV~~~L~~Al~El~VLlDvLsilk~~~y~~ld~~tkP~p~p~~il~d~avqv~~K~kaL~~Aa~iLk~gAerLeq~v 155 (657)
-|..|++.||.-.++|..=++-|.- ++|+ .-++.+...++.|....+.|...+
T Consensus 33 ~W~~v~~~Lr~~~~~Lr~dl~~li~------------~~~~---------------~~k~~~~~la~~lf~~le~LD~Aa 85 (112)
T d1nzea_ 33 AWPSLQNDLRLRASYLRYDLKTVIS------------AKPK---------------DEKKSLQELTSKLFSSIDNLDHAA 85 (112)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH------------TSCH---------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH------------hCCH---------------hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999998876554432 3443 346667778888888888888776
Q ss_pred H-----HHHHHHHHHHHHh
Q 006207 156 A-----KEARFYGALIRLQ 169 (657)
Q Consensus 156 ~-----re~~F~~eLlrLR 169 (657)
. ....+|.+....-
T Consensus 86 r~kd~~~a~~~Y~~t~~~l 104 (112)
T d1nzea_ 86 KIKSPTEAEKYYGQTVSNI 104 (112)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHH
Confidence 2 3377777766543
No 9
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}
Probab=9.51 E-value=72 Score=29.64 Aligned_cols=17 Identities=18% Similarity=0.534 Sum_probs=15.4
Q ss_pred eEEEEecCCceEeEEEe
Q 006207 576 SLSFELDQGETVSLVAH 592 (657)
Q Consensus 576 ~l~~~~~~~~~~~lva~ 592 (657)
.++|++.+||++|||..
T Consensus 20 ~vs~~i~~GEi~~iiG~ 36 (258)
T d1b0ua_ 20 GVSLQARAGDVISIIGS 36 (258)
T ss_dssp EEEEEECTTCEEEEECC
T ss_pred ceeeEEcCCCEEEEECC
Confidence 68999999999999974
No 10
>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}
Probab=9.12 E-value=1.6e+02 Score=25.08 Aligned_cols=40 Identities=20% Similarity=0.275 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhhhccccccceeeEEEEecCCceEeEEE
Q 006207 552 ASQVIRWLHEEALMVGIKANRDFLSLSFELDQGETVSLVA 591 (657)
Q Consensus 552 a~~~i~wl~~ea~~~g~~~~~dfl~l~~~~~~~~~~~lva 591 (657)
+.+++++|.++|...|+++....--..++.++|...+++.
T Consensus 109 ~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~ 148 (251)
T d2i0za1 109 AQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVIL 148 (251)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEe
Confidence 4578999999999999988766666666777777666553
Done!