BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006208
         (657 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QSZ|A Chain A, Crystal Structure Of The Star-Related Lipid Transfer
           Protein (Fragment 25-204) From Xanthomonas Axonopodis At
           The Resolution 2.4a, Northeast Structural Genomics
           Consortium Target Xar342
 pdb|3QSZ|B Chain B, Crystal Structure Of The Star-Related Lipid Transfer
           Protein (Fragment 25-204) From Xanthomonas Axonopodis At
           The Resolution 2.4a, Northeast Structural Genomics
           Consortium Target Xar342
          Length = 189

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 10/124 (8%)

Query: 88  WKLKQDTEEFRVMYREGPHGTPFHSLLVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQ 147
           W L +D E  +V Y     G+P      E  ++A  D  + V  ++  + +W P      
Sbjct: 5   WSLAKDAEGIKV-YVRNVEGSPLREFRGEVRLKAAADDVVKVLRDANAFRQWXPD----- 58

Query: 148 FKIITSNCLKKIRVGEQISLVRVKVPWPLSCREGLVHYFSFDYFQDGLVVVLINSISDLK 207
              + ++ L K    EQ   +    PWP+S R+G V++F+++   DG + V + ++ D  
Sbjct: 59  ---VAASELLKATDTEQYHYLDNSAPWPVSNRDG-VYHFTYEKAGDGAITVRVEAVPDYL 114

Query: 208 SIDK 211
            + K
Sbjct: 115 PLRK 118


>pdb|1EFP|B Chain B, Electron Transfer Flavoprotein (Etf) From Paracoccus
           Denitrificans
 pdb|1EFP|D Chain D, Electron Transfer Flavoprotein (Etf) From Paracoccus
           Denitrificans
          Length = 252

 Score = 31.6 bits (70), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 6/46 (13%)

Query: 446 MSRHLNDEIPDKSHVNMRKK------ISISPGVEQALETLETAISM 485
           MS +  DEI  +  + +++K      I++S GV+QA ETL TA++M
Sbjct: 33  MSMNPFDEIAVEEAIRLKEKGQAEEIIAVSIGVKQAAETLRTALAM 78


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.130    0.369 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,795,058
Number of Sequences: 62578
Number of extensions: 693872
Number of successful extensions: 1098
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1098
Number of HSP's gapped (non-prelim): 6
length of query: 657
length of database: 14,973,337
effective HSP length: 105
effective length of query: 552
effective length of database: 8,402,647
effective search space: 4638261144
effective search space used: 4638261144
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)