Query 006208
Match_columns 657
No_of_seqs 142 out of 344
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 19:57:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006208.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006208hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08877 START_2 Uncharacterize 100.0 1.2E-41 2.6E-46 335.6 22.5 211 51-288 2-215 (215)
2 cd08911 START_STARD7-like Lipi 100.0 2.6E-33 5.7E-38 276.6 23.7 183 84-288 19-207 (207)
3 cd08910 START_STARD2-like Lipi 100.0 3.9E-33 8.5E-38 275.9 22.9 180 85-288 24-207 (207)
4 cd08870 START_STARD2_7-like Li 100.0 2.5E-32 5.5E-37 269.2 24.6 180 85-288 21-209 (209)
5 cd08871 START_STARD10-like Lip 100.0 4.3E-32 9.3E-37 269.0 24.7 183 85-291 22-206 (222)
6 cd08906 START_STARD3-like Chol 100.0 2.2E-30 4.8E-35 257.0 23.6 177 85-287 24-208 (209)
7 cd08872 START_STARD11-like Cer 100.0 4.9E-30 1.1E-34 259.2 23.6 182 85-289 25-228 (235)
8 cd08876 START_1 Uncharacterize 100.0 1.6E-29 3.5E-34 243.3 23.8 181 83-286 14-195 (195)
9 cd08905 START_STARD1-like Chol 100.0 1E-29 2.2E-34 251.7 22.8 177 85-287 24-208 (209)
10 cd08868 START_STARD1_3_like Ch 100.0 3.2E-29 6.9E-34 246.2 25.1 177 87-288 25-208 (208)
11 cd08869 START_RhoGAP C-termina 100.0 1.9E-29 4.2E-34 247.4 23.0 175 85-284 18-193 (197)
12 cd08874 START_STARD9-like C-te 100.0 4.4E-29 9.6E-34 247.9 23.0 169 85-277 21-196 (205)
13 smart00234 START in StAR and p 100.0 6.4E-29 1.4E-33 240.2 22.5 182 85-288 18-203 (206)
14 cd08914 START_STARD15-like Lip 100.0 1.4E-28 3E-33 249.1 19.4 161 85-271 55-218 (236)
15 cd00177 START Lipid-binding ST 100.0 1.8E-27 4E-32 223.5 24.1 177 86-285 15-192 (193)
16 cd08903 START_STARD5-like Lipi 100.0 6.4E-27 1.4E-31 231.6 23.6 178 85-287 21-207 (208)
17 cd08913 START_STARD14-like Lip 100.0 7.2E-27 1.6E-31 237.3 22.0 166 85-276 58-227 (240)
18 cd08867 START_STARD4_5_6-like 99.9 4E-26 8.8E-31 224.0 25.2 176 85-285 21-205 (206)
19 cd08873 START_STARD14_15-like 99.9 9.4E-27 2E-31 235.8 21.0 158 85-267 54-213 (235)
20 PF01852 START: START domain; 99.9 7.9E-26 1.7E-30 218.0 22.8 182 85-290 18-205 (206)
21 cd08908 START_STARD12-like C-t 99.9 1E-25 2.2E-30 224.1 20.8 168 86-278 27-195 (204)
22 cd08909 START_STARD13-like C-t 99.9 1.2E-23 2.6E-28 209.5 21.9 168 86-277 27-195 (205)
23 cd08904 START_STARD6-like Lipi 99.9 2.8E-22 6.1E-27 199.4 24.5 177 86-285 22-203 (204)
24 cd08907 START_STARD8-like C-te 99.9 1.9E-21 4.1E-26 193.3 20.7 174 85-284 26-201 (205)
25 KOG2761 START domain-containin 99.9 1.6E-21 3.5E-26 194.7 20.3 186 83-291 26-218 (219)
26 cd08902 START_STARD4-like Lipi 99.8 2.5E-17 5.5E-22 163.7 20.3 175 85-285 22-201 (202)
27 PLN00188 enhanced disease resi 99.6 1.1E-13 2.4E-18 157.2 19.2 172 85-279 197-381 (719)
28 cd07813 COQ10p_like Coenzyme Q 99.4 2.1E-12 4.5E-17 117.6 13.2 135 114-287 2-137 (138)
29 cd08864 SRPBCC_DUF3074 DUF3074 99.4 4.6E-12 9.9E-17 126.9 14.8 119 131-270 60-191 (208)
30 cd08866 SRPBCC_11 Ligand-bindi 99.3 9.4E-11 2E-15 106.6 16.4 135 113-287 1-144 (144)
31 cd07819 SRPBCC_2 Ligand-bindin 99.0 1.8E-08 3.9E-13 90.2 16.0 135 113-285 4-140 (140)
32 cd05018 CoxG Carbon monoxide d 99.0 2E-08 4.3E-13 90.4 15.8 139 112-285 2-143 (144)
33 PF03364 Polyketide_cyc: Polyk 98.6 7E-07 1.5E-11 80.1 13.1 125 119-282 1-130 (130)
34 cd08875 START_ArGLABRA2_like C 98.6 1.2E-06 2.5E-11 89.8 15.5 157 110-286 59-229 (229)
35 KOG1739 Serine/threonine prote 98.6 3.1E-07 6.8E-12 101.0 10.8 183 85-288 402-603 (611)
36 cd07817 SRPBCC_8 Ligand-bindin 98.5 2.5E-06 5.5E-11 76.5 14.4 133 113-286 2-138 (139)
37 cd07821 PYR_PYL_RCAR_like Pyra 98.4 1E-05 2.2E-10 71.9 15.9 134 113-285 3-139 (140)
38 PRK10724 hypothetical protein; 98.4 6.2E-06 1.4E-10 79.6 15.5 140 110-288 14-154 (158)
39 cd08861 OtcD1_ARO-CYC_like N-t 98.3 2E-05 4.3E-10 71.7 13.5 131 116-286 4-141 (142)
40 PF11274 DUF3074: Protein of u 98.0 0.0002 4.3E-09 71.2 15.0 103 152-268 40-167 (184)
41 cd08860 TcmN_ARO-CYC_like N-te 97.8 0.0009 2E-08 63.5 16.0 137 116-287 6-144 (146)
42 PF10604 Polyketide_cyc2: Poly 97.7 0.0063 1.4E-07 54.1 19.1 133 111-285 2-138 (139)
43 cd07812 SRPBCC START/RHO_alpha 97.7 0.0032 6.9E-08 53.7 15.8 135 114-283 2-139 (141)
44 cd07824 SRPBCC_6 Ligand-bindin 97.5 0.0039 8.5E-08 57.9 15.0 131 114-283 4-144 (146)
45 cd07823 SRPBCC_5 Ligand-bindin 97.5 0.0033 7.2E-08 58.4 14.5 139 115-286 3-145 (146)
46 cd08862 SRPBCC_Smu440-like Lig 97.4 0.0093 2E-07 53.4 15.2 133 113-285 3-136 (138)
47 cd07818 SRPBCC_1 Ligand-bindin 97.4 0.013 2.8E-07 53.9 16.4 33 112-144 3-35 (150)
48 cd07822 SRPBCC_4 Ligand-bindin 97.2 0.028 6E-07 50.0 16.0 132 113-282 2-133 (141)
49 cd08865 SRPBCC_10 Ligand-bindi 97.1 0.016 3.4E-07 51.4 14.0 30 115-144 3-32 (140)
50 COG2867 Oligoketide cyclase/li 96.5 0.033 7.2E-07 54.0 11.6 139 113-288 4-142 (146)
51 cd07814 SRPBCC_CalC_Aha1-like 96.1 0.33 7.1E-06 43.4 14.9 137 113-286 2-138 (139)
52 cd07825 SRPBCC_7 Ligand-bindin 95.4 0.55 1.2E-05 42.7 14.0 30 113-142 2-31 (144)
53 cd07820 SRPBCC_3 Ligand-bindin 94.6 1.4 3.1E-05 40.4 14.3 30 115-144 3-32 (137)
54 cd08893 SRPBCC_CalC_Aha1-like_ 94.1 2.7 5.8E-05 37.5 14.7 30 113-142 2-31 (136)
55 KOG3177 Oligoketide cyclase/li 90.7 2.2 4.7E-05 44.1 10.3 137 117-291 74-214 (227)
56 cd08899 SRPBCC_CalC_Aha1-like_ 88.2 13 0.00028 35.3 13.2 31 111-141 11-41 (157)
57 COG3427 Carbon monoxide dehydr 87.0 29 0.00064 34.1 14.8 107 116-258 6-114 (146)
58 cd08896 SRPBCC_CalC_Aha1-like_ 84.9 33 0.00072 31.8 14.5 29 113-141 2-30 (146)
59 cd07816 Bet_v1-like Ligand-bin 82.7 44 0.00096 31.7 17.1 119 112-260 2-123 (148)
60 COG5637 Predicted integral mem 80.9 27 0.00058 35.8 11.9 106 111-258 70-178 (217)
61 PF06240 COXG: Carbon monoxide 78.1 60 0.0013 30.4 13.2 133 116-283 2-137 (140)
62 cd08894 SRPBCC_CalC_Aha1-like_ 76.2 64 0.0014 29.7 14.4 29 113-141 2-30 (139)
63 cd08900 SRPBCC_CalC_Aha1-like_ 75.9 66 0.0014 29.7 13.2 29 113-141 2-30 (143)
64 PF08327 AHSA1: Activator of H 64.4 99 0.0021 27.0 12.4 123 120-285 1-123 (124)
65 cd07826 SRPBCC_CalC_Aha1-like_ 56.0 1.7E+02 0.0037 27.1 15.2 30 113-142 2-31 (142)
66 COG3832 Uncharacterized conser 54.4 2E+02 0.0044 27.4 13.0 31 111-141 8-38 (149)
67 cd08898 SRPBCC_CalC_Aha1-like_ 51.7 15 0.00032 33.3 3.1 31 113-143 3-33 (145)
68 KOG2200 Tumour suppressor prot 50.2 5.2 0.00011 46.7 -0.1 70 175-267 575-645 (674)
69 TIGR01599 PYST-A Plasmodium yo 45.4 3.7E+02 0.0081 27.9 13.1 94 81-186 31-127 (208)
70 PF04707 PRELI: PRELI-like fam 43.9 3E+02 0.0064 26.8 10.9 76 163-258 38-119 (157)
71 PF08417 PaO: Pheophorbide a o 40.6 61 0.0013 28.7 5.2 47 235-281 26-75 (92)
72 cd08895 SRPBCC_CalC_Aha1-like_ 39.6 3.1E+02 0.0068 25.4 17.0 29 113-141 2-30 (146)
73 cd08897 SRPBCC_CalC_Aha1-like_ 37.0 3.3E+02 0.007 24.8 14.9 29 113-141 2-30 (133)
74 cd08891 SRPBCC_CalC Ligand-bin 30.3 4.5E+02 0.0097 24.4 15.9 27 113-141 2-28 (149)
75 cd08901 SRPBCC_CalC_Aha1-like_ 26.9 53 0.0012 30.2 2.7 30 113-142 2-31 (136)
76 PF00848 Ring_hydroxyl_A: Ring 22.9 6.3E+02 0.014 23.6 10.2 38 235-273 120-157 (209)
No 1
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=100.00 E-value=1.2e-41 Score=335.59 Aligned_cols=211 Identities=32% Similarity=0.553 Sum_probs=191.3
Q ss_pred HHHhhhhHHHHHHHHHhhhccccccccccccccCCCCCEEEecCCCeEEEEEeCCCCCCcEEEEEEEEEeCCHHHHHHHH
Q 006208 51 NVVERKTAEISSFLGMLRSASVKDNEVSKTSEASHGEWKLKQDTEEFRVMYREGPHGTPFHSLLVEGYVEAPLDVCLCVS 130 (657)
Q Consensus 51 ~v~~~rs~ev~~fL~mL~s~~~~d~~~~~~~e~s~egWkL~kDkdGIkVyYR~~peGS~lks~K~EgvIDAPl~~LLAVL 130 (657)
.+++.+++.+..++..|.. +++|++..+++||+||||..+ +++++++|++|+|++|+..+++||
T Consensus 2 ~~~~~~~~~~~~~~~~l~~---------------~~~W~~~~~~~~i~v~~r~~~-~~~~~~~k~e~~i~~~~~~~~~vl 65 (215)
T cd08877 2 DKIRQEATIMQENLKDLDE---------------SDGWTLQKESEGIRVYYKFEP-DGSLLSLRMEGEIDGPLFNLLALL 65 (215)
T ss_pred hhHHHHHHHHHHHHhcccC---------------CCCcEEeccCCCeEEEEEeCC-CCCEEEEEEEEEecCChhHeEEEE
Confidence 3578888888888888876 558999999999999999997 677999999999999999999999
Q ss_pred hhcccccccccccccCccccccceeeeeeecCCeEEEEEEeecccccCcceEEEEEEEeee-CCCeEEEEEecccccccc
Q 006208 131 WESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQISLVRVKVPWPLSCREGLVHYFSFDYF-QDGLVVVLINSISDLKSI 209 (657)
Q Consensus 131 ~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e~IvY~rvklPWPLSnRDaVl~~~~~d~l-edGsvVIl~kSI~D~~~~ 209 (657)
+|+++|++|+|+|. +++.|++++.++.++|+++++|||+++||+|+++++++++ ++|.++|.++|+++....
T Consensus 66 ~d~~~~~~W~p~~~-------~~~~l~~~~~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~ 138 (215)
T cd08877 66 NEVELYKTWVPFCI-------RSKKVKQLGRADKVCYLRVDLPWPLSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEF 138 (215)
T ss_pred ehhhhHhhhcccce-------eeEEEeecCCceEEEEEEEeCceEecceEEEEEEEEEeeeccCCCEEEEEecCCCCccc
Confidence 99999999999999 8999999999999999999999999999999999988888 689999999999865322
Q ss_pred cccCCCCCCCCCCCCC-CeEEEEe-eeeEEEEEecCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHh
Q 006208 210 DKSTHGFTSDGIPEAK-DVVRVDL-VGGFALQKVTEERSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFKLYQKAVVS 287 (657)
Q Consensus 210 ~~~~~G~~~d~IPe~K-GvVRIdi-~Ggf~IqPlg~nkT~Vtyva~vDPKG~~IP~WLINfvaKql~~~tLk~LqKaa~k 287 (657)
+ +++...+|+.+ |+||+.. .++|.|+|+++++|.++|++++||||+|||.||+||++|++++.+|.+|+++|++
T Consensus 139 ~----~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP~~liN~~~k~~~~~~~~~l~k~~~~ 214 (215)
T cd08877 139 L----KLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLVPKSLLNFVARKFAGLLFEKIQKAAKN 214 (215)
T ss_pred c----cccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 22334689988 9999999 8999999999999999999999999977999999999999999999999999987
Q ss_pred h
Q 006208 288 V 288 (657)
Q Consensus 288 v 288 (657)
+
T Consensus 215 ~ 215 (215)
T cd08877 215 V 215 (215)
T ss_pred C
Confidence 5
No 2
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=100.00 E-value=2.6e-33 Score=276.62 Aligned_cols=183 Identities=16% Similarity=0.190 Sum_probs=165.5
Q ss_pred CCCCCEEEecCCCeEEEEEeCCCCCCcEEEEEEEEE-eCCHHHHHHHHhhcccccccccccccCccccccceeeeeeec-
Q 006208 84 SHGEWKLKQDTEEFRVMYREGPHGTPFHSLLVEGYV-EAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRV- 161 (657)
Q Consensus 84 s~egWkL~kDkdGIkVyYR~~peGS~lks~K~EgvI-DAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~- 161 (657)
..++|++..+++||+||.|..+ |++++.||+++++ ++|+..++++++|.+++++|+++|. +.++|++...
T Consensus 19 ~~~~W~l~~~~~~i~Vy~r~~~-~s~~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~-------~~~~le~~~~~ 90 (207)
T cd08911 19 EPDGWEPFIEKKDMLVWRREHP-GTGLYEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAV-------ELEVVDEDPET 90 (207)
T ss_pred cCCCcEEEEEcCceEEEEeccC-CCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhhe-------eEEEEEccCCC
Confidence 3557999999999999999986 8999999999988 9999999999999999999999998 8899988544
Q ss_pred CCeEEEEEEeecccccCcceEEEEEEEeeeCCCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEe-eeeEEEEE
Q 006208 162 GEQISLVRVKVPWPLSCREGLVHYFSFDYFQDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDL-VGGFALQK 240 (657)
Q Consensus 162 ~e~IvY~rvklPWPLSnRDaVl~~~~~d~ledGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi-~Ggf~IqP 240 (657)
+..++|+.+++||||+|||+|++.......+++.++|+.+|+++ +.+|+.+|+||+.. .++|.|+|
T Consensus 91 ~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv~h-------------p~~P~~~g~VRv~~~~~~~~i~p 157 (207)
T cd08911 91 GSEIIYWEMQWPKPFANRDYVYVRRYIIDEENKLIVIVSKAVQH-------------PSYPESPKKVRVEDYWSYMVIRP 157 (207)
T ss_pred CCEEEEEEEECCCCCCCccEEEEEEEEEcCCCCEEEEEEecCCC-------------CCCCCCCCCEEEEEeEEEEEEEe
Confidence 78999999999999999999999865544556777888888764 57899999999999 89999999
Q ss_pred ec---CCeEEEEEEEEEcCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 006208 241 VT---EERSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFKLYQKAVVSV 288 (657)
Q Consensus 241 lg---~nkT~Vtyva~vDPKG~~IP~WLINfvaKql~~~tLk~LqKaa~kv 288 (657)
++ +++|.+.|+++.|||| .||.||+|++++++++.+|++|+++|.+|
T Consensus 158 ~~~~~~~~~~~~~~~~~dPgG-~IP~~lvN~~~~~~~~~~l~~l~~a~~~y 207 (207)
T cd08911 158 HKSFDEPGFEFVLTYFDNPGV-NIPSYITSWVAMSGMPDFLERLRNAALKY 207 (207)
T ss_pred CCCCCCCCeEEEEEEEeCCCC-ccCHHHHHHHHHhhccHHHHHHHHHHhcC
Confidence 94 6789999999999999 99999999999999999999999999875
No 3
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=100.00 E-value=3.9e-33 Score=275.85 Aligned_cols=180 Identities=22% Similarity=0.204 Sum_probs=158.2
Q ss_pred CCCCEEEecCCCeEEEEEeCCCCCCcEEEEEEEEEe-CCHHHHHHHHhhcccccccccccccCccccccceeeeeeecCC
Q 006208 85 HGEWKLKQDTEEFRVMYREGPHGTPFHSLLVEGYVE-APLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGE 163 (657)
Q Consensus 85 ~egWkL~kDkdGIkVyYR~~peGS~lks~K~EgvID-APl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e 163 (657)
.++|++..+++||+||.|..+ |++++.+|++++++ +++..++++++|++++++|+++|. + ++++.+.+.
T Consensus 24 ~~~W~l~~~~~~i~Vy~r~~~-~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~-------~--~~~~~~~~~ 93 (207)
T cd08910 24 GAAWELLVESSGISIYRLLDE-QSGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVK-------E--LYEKECDGE 93 (207)
T ss_pred CCCeEEEEecCCeEEEEeccC-CCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHH-------h--heeecCCCC
Confidence 467999999999999999985 99999999999998 699999999999999999999997 3 566778888
Q ss_pred eEEEEEEeecccccCcceEEEEEEEeeeCCC--eEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEe-eeeEEEEE
Q 006208 164 QISLVRVKVPWPLSCREGLVHYFSFDYFQDG--LVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDL-VGGFALQK 240 (657)
Q Consensus 164 ~IvY~rvklPWPLSnRDaVl~~~~~d~ledG--svVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi-~Ggf~IqP 240 (657)
.++|+.+++|||+++||+|++........++ .++|+.+++.+ +.+|+.+|+||+.. .++|.|+|
T Consensus 94 ~i~y~~~k~PwPvs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~-------------p~~P~~~~~VRv~~~~~~~~i~p 160 (207)
T cd08910 94 TVIYWEVKYPFPLSNRDYVYIRQRRDLDVEGRKIWVILARSTSL-------------PQLPEKPGVIRVKQYKQSLAIES 160 (207)
T ss_pred EEEEEEEEcCCCCCCceEEEEEEeccccCCCCeEEEEEecCCCC-------------CCCCCCCCCEEEEEEEEEEEEEe
Confidence 9999999999999999999875443322233 33555666542 57899999999999 89999999
Q ss_pred ecCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 006208 241 VTEERSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFKLYQKAVVSV 288 (657)
Q Consensus 241 lg~nkT~Vtyva~vDPKG~~IP~WLINfvaKql~~~tLk~LqKaa~kv 288 (657)
.++++|.++|+++.|||| .||.||+|++++..++.+|++|+++|.+|
T Consensus 161 ~~~~~t~i~~~~~~DPgG-~IP~wlvN~~~~~~~~~~l~~l~ka~~~y 207 (207)
T cd08910 161 DGKKGSKVFMYYFDNPGG-MIPSWLINWAAKNGVPNFLKDMQKACQNY 207 (207)
T ss_pred CCCCceEEEEEEEeCCCC-cchHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 999999999999999999 99999999999999999999999999875
No 4
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=100.00 E-value=2.5e-32 Score=269.23 Aligned_cols=180 Identities=19% Similarity=0.256 Sum_probs=162.6
Q ss_pred CCCCEEEecCCC----eEEEEEeCCCCCCcEEEEEEEEE-eCCHHHHHHHHhhcccccccccccccCccccccceeeeee
Q 006208 85 HGEWKLKQDTEE----FRVMYREGPHGTPFHSLLVEGYV-EAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKI 159 (657)
Q Consensus 85 ~egWkL~kDkdG----IkVyYR~~peGS~lks~K~EgvI-DAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkki 159 (657)
.++|++..+++| |+||.|..+ |++++.+|+++++ ++|+..++++++|.+++++|+++|. +.++|+..
T Consensus 21 ~~~W~~~~~k~~~~~~i~vy~r~~~-~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~-------~~~~le~~ 92 (209)
T cd08870 21 GQAWQQVMDKSTPDMSYQAWRRKPK-GTGLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETVI-------EHETLEED 92 (209)
T ss_pred CCcceEhhhccCCCceEEEEecccC-CCCceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhhee-------eEEEEEec
Confidence 468999999999 999999985 8999999999999 5699999999999999999999998 89999876
Q ss_pred ec-CCeEEEEEEeecccccCcceEEEEEEEeeeCCCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEe-eeeEE
Q 006208 160 RV-GEQISLVRVKVPWPLSCREGLVHYFSFDYFQDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDL-VGGFA 237 (657)
Q Consensus 160 s~-~e~IvY~rvklPWPLSnRDaVl~~~~~d~ledGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi-~Ggf~ 237 (657)
.. +..++|+.+++|||+++||+|++...... .++.++|+++++++ +.+|+. |+||++. .++|.
T Consensus 93 ~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~-~~~~~~i~~~sv~~-------------~~~P~~-~~vRv~~~~~~~~ 157 (209)
T cd08870 93 EKSGTEIVRWVKKFPFPLSDREYVIARRLWES-DDRSYVCVTKGVPY-------------PSVPRS-GRKRVDDYESSLV 157 (209)
T ss_pred CCCCcEEEEEEEECCCcCCCceEEEEEEEEEc-CCCEEEEEEeCCcC-------------CCCCCC-CcEEEEEEEeEEE
Confidence 55 58899999999999999999998754432 36778888888764 468888 9999999 89999
Q ss_pred EEEe--cCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 006208 238 LQKV--TEERSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFKLYQKAVVSV 288 (657)
Q Consensus 238 IqPl--g~nkT~Vtyva~vDPKG~~IP~WLINfvaKql~~~tLk~LqKaa~kv 288 (657)
|+|+ ++++|.+.|+++.||+| .||.||+|++++.+++.+|++|+++|.+|
T Consensus 158 i~p~~~~~~~t~~~~~~~~dp~G-~IP~wlvN~~~~~~~~~~l~~l~~a~~~Y 209 (209)
T cd08870 158 IRAVKGDGQGSACEVTYFHNPDG-GIPRELAKLAVKRGMPGFLKKLENALRKY 209 (209)
T ss_pred EEEecCCCCceEEEEEEEECCCC-CCCHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 9999 89999999999999999 89999999999999999999999999875
No 5
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=100.00 E-value=4.3e-32 Score=268.96 Aligned_cols=183 Identities=17% Similarity=0.258 Sum_probs=167.6
Q ss_pred CCCCEEEecCCCeEEEEEeCCCCCCcEEEEEEEEE-eCCHHHHHHHHhhcccccccccccccCccccccceeeeeeecCC
Q 006208 85 HGEWKLKQDTEEFRVMYREGPHGTPFHSLLVEGYV-EAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGE 163 (657)
Q Consensus 85 ~egWkL~kDkdGIkVyYR~~peGS~lks~K~EgvI-DAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e 163 (657)
.++|++..+++||+||+|..+ +++++.+|+++++ ++|+..++++|+|.+.+++|+++|. +++.|++++.+.
T Consensus 22 ~~~W~~~~~~~gi~iy~r~~~-~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~-------e~~~ie~~d~~~ 93 (222)
T cd08871 22 TDGWKLKYNKNNVKVWTKNPE-NSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMI-------ESFDICQLNPNN 93 (222)
T ss_pred CCCcEEEEcCCCeEEEEeeCC-CCceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhc-------eeEEEEEcCCCC
Confidence 448999999999999999985 7889999999998 7899999999999999999999998 899999999999
Q ss_pred eEEEEEEeecccccCcceEEEEEEEeeeCCCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEe-eeeEEEEEec
Q 006208 164 QISLVRVKVPWPLSCREGLVHYFSFDYFQDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDL-VGGFALQKVT 242 (657)
Q Consensus 164 ~IvY~rvklPWPLSnRDaVl~~~~~d~ledGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi-~Ggf~IqPlg 242 (657)
.++|+.+++|||+++||+|+...... .++.++|+..|+.+ +.+|+.+|+||+.. .+||.|+|++
T Consensus 94 ~i~y~~~~~P~pvs~RDfV~~r~~~~--~~~~~vi~~~sv~~-------------~~~P~~~g~VR~~~~~~g~~i~p~~ 158 (222)
T cd08871 94 DIGYYSAKCPKPLKNRDFVNLRSWLE--FGGEYIIFNHSVKH-------------KKYPPRKGFVRAISLLTGYLIRPTG 158 (222)
T ss_pred EEEEEEeECCCCCCCCeEEEEEEEEe--CCCEEEEEeccccC-------------CCCCCCCCeEEeEEEccEEEEEECC
Confidence 99999999999999999999876543 23777777777643 56899999999998 8999999999
Q ss_pred CCeEEEEEEEEEcCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Q 006208 243 EERSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFKLYQKAVVSVSTY 291 (657)
Q Consensus 243 ~nkT~Vtyva~vDPKG~~IP~WLINfvaKql~~~tLk~LqKaa~kv~~s 291 (657)
+++|.|+|++++|||| .||.||+|++++.+++.+|++|+++|.+|..+
T Consensus 159 ~~~t~vt~~~~~Dp~G-~IP~~lvN~~~~~~~~~~l~~l~k~~~~y~~~ 206 (222)
T cd08871 159 PKGCTLTYVTQNDPKG-SLPKWVVNKATTKLAPKVMKKLHKAALKYPEW 206 (222)
T ss_pred CCCEEEEEEEecCCCC-CcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 89999999999999999999999999999655
No 6
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=99.97 E-value=2.2e-30 Score=257.01 Aligned_cols=177 Identities=18% Similarity=0.161 Sum_probs=155.6
Q ss_pred CCCCEEEecC-CCeEEEEEeCCCCCCcEEEEEEEEEeCCHHHHH-HHHhhcccccccccccccCccccccceeeeeeecC
Q 006208 85 HGEWKLKQDT-EEFRVMYREGPHGTPFHSLLVEGYVEAPLDVCL-CVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVG 162 (657)
Q Consensus 85 ~egWkL~kDk-dGIkVyYR~~peGS~lks~K~EgvIDAPl~~LL-AVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~ 162 (657)
.++|++.++. +||+||+|..+ +++ +.||++++|++|+..++ +||.|++.+++|+++|. ++++|++++.+
T Consensus 24 ~~~W~l~~~~~~gi~V~s~~~~-~~~-~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~~~-------~~~vi~~~~~~ 94 (209)
T cd08906 24 EENWKFEKNNDNGDTVYTLEVP-FHG-KTFILKAFMQCPAELVYQEVILQPEKMVLWNKTVS-------ACQVLQRVDDN 94 (209)
T ss_pred ccCCEEEEecCCCCEEEEeccC-CCC-cEEEEEEEEcCCHHHHHHHHHhChhhccccCccch-------hhhheeeccCC
Confidence 4589998875 99999999986 777 99999999999999995 89999999999999999 99999999999
Q ss_pred CeEEEEEEeecc---cccCcceEEEEEEEeeeCCCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEe-eeeEEE
Q 006208 163 EQISLVRVKVPW---PLSCREGLVHYFSFDYFQDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDL-VGGFAL 238 (657)
Q Consensus 163 e~IvY~rvklPW---PLSnRDaVl~~~~~d~ledGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi-~Ggf~I 238 (657)
..++| .+.+|| |+++||+|++..... .+++ ++++..|+. ++.+|+.+|+||+.. .+||++
T Consensus 95 ~~i~Y-~v~~p~~~~pv~~RDfV~~r~~~~-~~~~-~i~~~~sv~-------------~~~~P~~~~~VR~~~~~~G~~i 158 (209)
T cd08906 95 TLVSY-DVAAGAAGGVVSPRDFVNVRRIER-RRDR-YVSAGISTT-------------HSHKPPLSKYVRGENGPGGFVV 158 (209)
T ss_pred cEEEE-EEccccccCCCCCCceEEEEEEEe-cCCc-EEEEEEEEe-------------cCCCCCCCCeEEEeeeccEEEE
Confidence 98888 999998 899999999976544 3344 455555543 357999999999995 888888
Q ss_pred EE--ecCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHh
Q 006208 239 QK--VTEERSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFKLYQKAVVS 287 (657)
Q Consensus 239 qP--lg~nkT~Vtyva~vDPKG~~IP~WLINfvaKql~~~tLk~LqKaa~k 287 (657)
.| .++++|.|+|++|+|||| .||.||+|.++.+.+..+|.+|+++++.
T Consensus 159 ~~~~~~~~~t~vt~~~~~Dp~G-~lP~~lvN~~~~~~~~~~~~~LR~~~~~ 208 (209)
T cd08906 159 LKSASNPSVCTFIWILNTDLKG-RLPRYLIHQSLAATMFEFASHLRQRIRD 208 (209)
T ss_pred EECCCCCCceEEEEEEecCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 87 588999999999999999 9999999999999999999999999864
No 7
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=99.97 E-value=4.9e-30 Score=259.18 Aligned_cols=182 Identities=16% Similarity=0.187 Sum_probs=159.1
Q ss_pred CCCCEEEecCCCeEEEEEeCCCCCCcE--EEEEEEEEe-CCHHHHHHHHhhcccccccccccccCccccccceeeeeeec
Q 006208 85 HGEWKLKQDTEEFRVMYREGPHGTPFH--SLLVEGYVE-APLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRV 161 (657)
Q Consensus 85 ~egWkL~kDkdGIkVyYR~~peGS~lk--s~K~EgvID-APl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~ 161 (657)
.++|++..+++||+||.|..+ +++++ .+|++++|+ +|+..+.++++|++++++|+++|. +.++|++++.
T Consensus 25 ~~~W~l~~~~~gikVy~r~~~-~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~~~-------~~~vie~l~~ 96 (235)
T cd08872 25 ADGWQLFAEEGEMKVYRREVE-EDGVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETTLE-------NFHVVETLSQ 96 (235)
T ss_pred CCCCEEEEeCCceEEEEEECC-CCCceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhhhh-------eeEEEEecCC
Confidence 448999999999999999985 77776 899999998 899999999999999999999998 8999999999
Q ss_pred CCeEEEEEEeecccccCcceEEEEEEEeeeC------CCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEe-e-
Q 006208 162 GEQISLVRVKVPWPLSCREGLVHYFSFDYFQ------DGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDL-V- 233 (657)
Q Consensus 162 ~e~IvY~rvklPWPLSnRDaVl~~~~~d~le------dGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi-~- 233 (657)
+..++|+.+++|||+++||+|++.......+ .+.++++..|+.+ +.+|+.+|+||+.. .
T Consensus 97 ~~~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h-------------~~~P~~~g~VRv~~~~~ 163 (235)
T cd08872 97 DTLIFHQTHKRVWPAAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDH-------------DSAPLNNKCVRAKLTVA 163 (235)
T ss_pred CCEEEEEEccCCCCCCCcEEEEEEEEEecCccccccCCCeEEEEEecccC-------------ccCCCCCCeEEEEEEee
Confidence 9999999999999999999999976543222 1567777777653 57999999999996 3
Q ss_pred -----------eeEEEEEecCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhc
Q 006208 234 -----------GGFALQKVTEERSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFKLYQKAVVSVS 289 (657)
Q Consensus 234 -----------Ggf~IqPlg~nkT~Vtyva~vDPKG~~IP~WLINfvaKql~~~tLk~LqKaa~kv~ 289 (657)
|.|.|+| ++++|.|+|++++|||| .||+||+|++++..++.+|+.|...+.+--
T Consensus 164 ~~~~~~i~~~~g~~~~t~-~~~~~~ity~~~~dPgG-~iP~wvvn~~~k~~~P~~l~~~~~~~~~~~ 228 (235)
T cd08872 164 MICQTFVSPPDGNQEITR-DNILCKITYVANVNPGG-WAPASVLRAVYKREYPKFLKRFTSYVQEKT 228 (235)
T ss_pred eeeeeeeecCCCcccccC-CCCeEEEEEEEEeCCCC-CccHHHHHHHHHhhchHHHHHHHHHHHHhc
Confidence 4466777 67899999999999999 999999999999999999999999887653
No 8
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.97 E-value=1.6e-29 Score=243.27 Aligned_cols=181 Identities=22% Similarity=0.400 Sum_probs=163.0
Q ss_pred cCCCCCEEEecCCCeEEEEEeCCCCCCcEEEEEEEEEeCCHHHHHHHHhhcccccccccccccCccccccceeeeeeecC
Q 006208 83 ASHGEWKLKQDTEEFRVMYREGPHGTPFHSLLVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVG 162 (657)
Q Consensus 83 ~s~egWkL~kDkdGIkVyYR~~peGS~lks~K~EgvIDAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~ 162 (657)
.++++|++..+++|++||+|..+ +++++.+|++++|++|++.+++++.|++.|++|+|.|. +++++++.+.+
T Consensus 14 ~~~~~W~~~~~~~~v~v~~~~~~-~~~~~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~~-------~~~vie~~~~~ 85 (195)
T cd08876 14 APDGDWQLVKDKDGIKVYTRDVE-GSPLKEFKAVAEVDASIEAFLALLRDTESYPQWMPNCK-------ESRVLKRTDDN 85 (195)
T ss_pred CCCCCCEEEecCCCeEEEEEECC-CCCeEEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhcc-------eEEEeecCCCC
Confidence 34677999999999999999985 77899999999999999999999999999999999999 99999998888
Q ss_pred CeEEEEEEeecccccCcceEEEEEEEeeeCCCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEe-eeeEEEEEe
Q 006208 163 EQISLVRVKVPWPLSCREGLVHYFSFDYFQDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDL-VGGFALQKV 241 (657)
Q Consensus 163 e~IvY~rvklPWPLSnRDaVl~~~~~d~ledGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi-~Ggf~IqPl 241 (657)
..++|+.+++|||+++||+|+........+++.++|.+.++++ .+|+.+|+||+.. .++|.|+|+
T Consensus 86 ~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~~~~i~~~s~~~--------------~~P~~~~~vR~~~~~~~~~i~~~ 151 (195)
T cd08876 86 ERSVYTVIDLPWPVKDRDMVLRSTTEQDADDGSVTITLEAAPE--------------ALPEQKGYVRIKTVEGQWTFTPL 151 (195)
T ss_pred cEEEEEEEecccccCCceEEEEEEEEEcCCCCEEEEEeecCCc--------------cCCCCCCeEEceeceeeEEEEEC
Confidence 8999999999999999999998755443446777777766432 2788889999999 899999999
Q ss_pred cCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHH
Q 006208 242 TEERSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFKLYQKAVV 286 (657)
Q Consensus 242 g~nkT~Vtyva~vDPKG~~IP~WLINfvaKql~~~tLk~LqKaa~ 286 (657)
++++|+|+|.+++||+| .||.|++|+++++.++.+|.+|++.|+
T Consensus 152 ~~~~t~vt~~~~~dp~g-~iP~~lv~~~~~~~~~~~l~~l~~~~~ 195 (195)
T cd08876 152 GNGKTRVTYQAYADPGG-SIPGWLANAFAKDAPYNTLENLRKQLK 195 (195)
T ss_pred CCCeEEEEEEEEeCCCC-CCCHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999 999999999999999999999999874
No 9
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=99.97 E-value=1e-29 Score=251.74 Aligned_cols=177 Identities=17% Similarity=0.179 Sum_probs=156.0
Q ss_pred CCCCEEEe-cCCCeEEEEEeCCCCCCcEEEEEEEEEeCCHHHHH-HHHhhcccccccccccccCccccccceeeeeeecC
Q 006208 85 HGEWKLKQ-DTEEFRVMYREGPHGTPFHSLLVEGYVEAPLDVCL-CVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVG 162 (657)
Q Consensus 85 ~egWkL~k-DkdGIkVyYR~~peGS~lks~K~EgvIDAPl~~LL-AVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~ 162 (657)
.++|++.+ +++|++||+|..+ +++ +.||++|++++|+..++ +++.|++.+++|+++|. ++++|++++.+
T Consensus 24 ~~~W~~~~~~~~gi~v~s~~~~-~~~-k~~k~e~~i~~~~~~l~~~l~~d~e~~~~W~~~~~-------~~~vl~~id~~ 94 (209)
T cd08905 24 QEGWKTEIVAENGDKVLSKVVP-DIG-KVFRLEVVVDQPLDNLYSELVDRMEQMGEWNPNVK-------EVKILQRIGKD 94 (209)
T ss_pred ccCCEEEEecCCCCEEEEEEcC-CCC-cEEEEEEEecCCHHHHHHHHHhchhhhceecccch-------HHHHHhhcCCC
Confidence 45899995 5899999999996 777 99999999999999999 99999999999999999 89999999999
Q ss_pred CeEEEEEEeeccc---ccCcceEEEEEEEeeeCCCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEe-eeeEEE
Q 006208 163 EQISLVRVKVPWP---LSCREGLVHYFSFDYFQDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDL-VGGFAL 238 (657)
Q Consensus 163 e~IvY~rvklPWP---LSnRDaVl~~~~~d~ledGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi-~Ggf~I 238 (657)
..++|. +.+||| +++||+|++...... ++.++++..++. ++.+|+.+|+||++. .|+|.|
T Consensus 95 ~~i~y~-~~~p~p~~~vs~RD~V~~~~~~~~--~~~~~~~~~s~~-------------~~~~P~~~~~VR~~~~~~~w~l 158 (209)
T cd08905 95 TLITHE-VAAETAGNVVGPRDFVSVRCAKRR--GSTCVLAGMATH-------------FGLMPEQKGFIRAENGPTCIVL 158 (209)
T ss_pred ceEEEE-EeccCCCCccCccceEEEEEEEEc--CCcEEEEEEeec-------------CCCCCCCCCeEEEEeeccEEEE
Confidence 999998 889999 999999998765432 334444444432 367899999999999 899999
Q ss_pred EEecC--CeEEEEEEEEEcCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHh
Q 006208 239 QKVTE--ERSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFKLYQKAVVS 287 (657)
Q Consensus 239 qPlg~--nkT~Vtyva~vDPKG~~IP~WLINfvaKql~~~tLk~LqKaa~k 287 (657)
+|+++ ++|.|+|++++|||| .||.||+|.++.+.+..+|.+|++++..
T Consensus 159 ~p~~~~~~~t~v~~~~~~DpkG-~iP~~lvN~~~~~~~~~~~~~Lr~~~~~ 208 (209)
T cd08905 159 RPLAGDPSKTKLTWLLSIDLKG-WLPKSIINQVLSQTQVDFANHLRQRMAS 208 (209)
T ss_pred EECCCCCCceEEEEEEeecCCC-CCCHHHHHHHhHHhHHHHHHHHHHHHhc
Confidence 99966 899999999999999 8999999999999999999999999863
No 10
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=99.97 E-value=3.2e-29 Score=246.24 Aligned_cols=177 Identities=18% Similarity=0.249 Sum_probs=158.3
Q ss_pred CCEEEecCC-CeEEEEEeCCCCCCcEEEEEEEEEeCCHHHHH-HHHhhcccccccccccccCccccccceeeeeeecCCe
Q 006208 87 EWKLKQDTE-EFRVMYREGPHGTPFHSLLVEGYVEAPLDVCL-CVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQ 164 (657)
Q Consensus 87 gWkL~kDkd-GIkVyYR~~peGS~lks~K~EgvIDAPl~~LL-AVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e~ 164 (657)
+|++.++++ |++||+|..+ |+. +.+|++|++++|+..++ +++.|.+.+++|+++|. ++++|++++.+..
T Consensus 25 ~W~l~~~~~~~i~i~~r~~~-~~~-~~~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~-------~~~~i~~~d~~~~ 95 (208)
T cd08868 25 GWKLEKNTTWGDVVYSRNVP-GVG-KVFRLTGVLDCPAEFLYNELVLNVESLPSWNPTVL-------ECKIIQVIDDNTD 95 (208)
T ss_pred CceEEEecCCCCEEEEEEcC-CCc-eEEEEEEEEcCCHHHHHHHHHcCccccceecCccc-------ceEEEEEecCCcE
Confidence 899999997 9999999986 655 78999999999999875 68889999999999999 9999999998899
Q ss_pred EEEEEEeec--ccccCcceEEEEEEEeeeCCCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEe-eeeEEEEEe
Q 006208 165 ISLVRVKVP--WPLSCREGLVHYFSFDYFQDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDL-VGGFALQKV 241 (657)
Q Consensus 165 IvY~rvklP--WPLSnRDaVl~~~~~d~ledGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi-~Ggf~IqPl 241 (657)
++|...+.| ||+++||+|+...... .++.++|+..|+++ +.+|+.+|+||+.. .+||.|+|+
T Consensus 96 i~y~~~~~~~~~~vs~RDfV~~r~~~~--~~~~~~i~~~sv~h-------------~~~P~~~g~VR~~~~~~~~~i~p~ 160 (208)
T cd08868 96 ISYQVAAEAGGGLVSPRDFVSLRHWGI--RENCYLSSGVSVEH-------------PAMPPTKNYVRGENGPGCWILRPL 160 (208)
T ss_pred EEEEEecCcCCCcccccceEEEEEEEe--cCCeEEEEEEeccC-------------CCCCCCCCeEEEeccccEEEEEEC
Confidence 999988865 9999999999876543 34667888777653 57899999999999 899999999
Q ss_pred cC--CeEEEEEEEEEcCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 006208 242 TE--ERSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFKLYQKAVVSV 288 (657)
Q Consensus 242 g~--nkT~Vtyva~vDPKG~~IP~WLINfvaKql~~~tLk~LqKaa~kv 288 (657)
++ ++|.|+|++++|||| +||.||+|.+++..++.+|+.|+++++.+
T Consensus 161 ~~~~~~t~v~~~~~~Dp~G-~iP~~lvN~~~~~~~~~~~~~Lr~~~~~~ 208 (208)
T cd08868 161 PNNPNKCNFTWLLNTDLKG-WLPQYLVDQALASVLLDFMKHLRKRIATL 208 (208)
T ss_pred CCCCCceEEEEEEEECCCC-CCcceeeehhhHHHHHHHHHHHHHHHhhC
Confidence 54 789999999999999 99999999999999999999999999753
No 11
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=99.97 E-value=1.9e-29 Score=247.42 Aligned_cols=175 Identities=13% Similarity=0.178 Sum_probs=155.6
Q ss_pred CCCCEEEecCCCeEEEEEeCCCCCCcEEEEEEEEEeCCHHHHHHHHhhcccccccccccccCccccccceeeeeeecCCe
Q 006208 85 HGEWKLKQDTEEFRVMYREGPHGTPFHSLLVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQ 164 (657)
Q Consensus 85 ~egWkL~kDkdGIkVyYR~~peGS~lks~K~EgvIDAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e~ 164 (657)
.++|++..+++||+||+|..+++++++.||++++|++++..+++++.|. .++|+++|. ++++|++++.+..
T Consensus 18 ~~~W~~~~~~~gi~I~~k~~~~~~~l~~~K~~~~v~a~~~~v~~~l~d~--r~~Wd~~~~-------~~~vie~id~~~~ 88 (197)
T cd08869 18 SKGWVSVSSSDHVELAFKKVDDGHPLRLWRASTEVEAPPEEVLQRILRE--RHLWDDDLL-------QWKVVETLDEDTE 88 (197)
T ss_pred cCCceEEecCCcEEEEEEeCCCCCcEEEEEEEEEeCCCHHHHHHHHHHH--Hhccchhhh-------eEEEEEEecCCcE
Confidence 5689999999999999999976669999999999999999999998874 699999999 9999999999999
Q ss_pred EEEEEEeecccccCcceEEEEEEEeeeCCCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEe-eeeEEEEEecC
Q 006208 165 ISLVRVKVPWPLSCREGLVHYFSFDYFQDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDL-VGGFALQKVTE 243 (657)
Q Consensus 165 IvY~rvklPWPLSnRDaVl~~~~~d~ledGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi-~Ggf~IqPlg~ 243 (657)
++|+.++.|||+++||+|++.......++|.++|.+.|+.+. +.+|+ |+||+.. .+||.|+|+++
T Consensus 89 i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~------------~~~p~--g~VR~~~~~~g~~i~p~~~ 154 (197)
T cd08869 89 VYQYVTNSMAPHPTRDYVVLRTWRTDLPKGACVLVETSVEHT------------EPVPL--GGVRAVVLASRYLIEPCGS 154 (197)
T ss_pred EEEEEeeCCCCCCCceEEEEEEEEecCCCCcEEEEEECCcCC------------CCCCC--CCEEEEEEeeeEEEEECCC
Confidence 999999999999999999997666556788899999987531 24565 9999999 79999999999
Q ss_pred CeEEEEEEEEEcCCCCCCCHHHHHHHHHHhHHHHHHHHHHH
Q 006208 244 ERSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFKLYQKA 284 (657)
Q Consensus 244 nkT~Vtyva~vDPKG~~IP~WLINfvaKql~~~tLk~LqKa 284 (657)
++|+|+|++++|||| .||.||+|.+. .+++..+.+|+.-
T Consensus 155 ~~t~vty~~~~Dp~G-~iP~wl~N~~~-~~~~~~~~~l~~~ 193 (197)
T cd08869 155 GKSRVTHICRVDLRG-RSPEWYNKVYG-HLCARELLRIRDS 193 (197)
T ss_pred CCeEEEEEEEECCCC-CCCceeecchH-hHHHHHHHHHHhh
Confidence 999999999999999 99999999988 6666777777653
No 12
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=99.97 E-value=4.4e-29 Score=247.94 Aligned_cols=169 Identities=18% Similarity=0.200 Sum_probs=151.7
Q ss_pred CCCCEEEecCCCeEEEEEeCCCCCCcEEEEEEEEEeCCHHHHHHHHhhcccccccccccccCccccccceeeeeeecCCe
Q 006208 85 HGEWKLKQDTEEFRVMYREGPHGTPFHSLLVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQ 164 (657)
Q Consensus 85 ~egWkL~kDkdGIkVyYR~~peGS~lks~K~EgvIDAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e~ 164 (657)
.+||++..+++||+||+|..+ | .++.||++++|++|+..++++|+|.+.+++|++++. +.++|++++.+..
T Consensus 21 ~~gW~l~~~~~gI~Vy~k~~~-~-~~~~~~ge~~v~as~~~v~~ll~D~~~r~~Wd~~~~-------~~~vl~~~~~d~~ 91 (205)
T cd08874 21 TAGWSYQCLEKDVVIYYKVFN-G-TYHGFLGAGVIKAPLATVWKAVKDPRTRFLYDTMIK-------TARIHKTFTEDIC 91 (205)
T ss_pred cCCcEEEecCCCEEEEEecCC-C-CcceEEEEEEEcCCHHHHHHHHhCcchhhhhHHhhh-------heeeeeecCCCeE
Confidence 568999999999999999985 6 899999999999999999999999999999999998 8999999999999
Q ss_pred EEEEEEeecccc--cCcceEEEEEEEeeeCCCeEEEEEecccccccccccCCCCCCCCCCCCC-CeEEEEe-eeeEEEEE
Q 006208 165 ISLVRVKVPWPL--SCREGLVHYFSFDYFQDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAK-DVVRVDL-VGGFALQK 240 (657)
Q Consensus 165 IvY~rvklPWPL--SnRDaVl~~~~~d~ledGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~K-GvVRIdi-~Ggf~IqP 240 (657)
++|++++.|||+ ++||+|++..... .++.++|.++|+++ +.+|+.+ |+||+.. .|||.|+|
T Consensus 92 i~y~~~~~Pwp~~~~~RDfV~l~~~~~--~~~~~vi~~~SV~~-------------~~~P~~~~~~VR~~~~~~gw~i~P 156 (205)
T cd08874 92 LVYLVHETPLCLLKQPRDFCCLQVEAK--EGELSVVACQSVYD-------------KSMPEPGRSLVRGEILPSAWILEP 156 (205)
T ss_pred EEEEEecCCCCCCCCCCeEEEEEEEEE--CCCcEEEEEEeccc-------------ccCCCCCCCeEEeeeEeeeEEEEE
Confidence 999999999999 9999999985432 33444577888865 4789875 9999999 89999999
Q ss_pred e---cCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHhHHHH
Q 006208 241 V---TEERSYFRTIANMDIKLDFVPPSLINFISRQLIGNG 277 (657)
Q Consensus 241 l---g~nkT~Vtyva~vDPKG~~IP~WLINfvaKql~~~t 277 (657)
+ ++++|+|+|++|+||||+.||+||+|.++++.+..+
T Consensus 157 ~~~~g~~~t~vty~~q~DPggg~iP~~l~N~~~~~~p~~~ 196 (205)
T cd08874 157 VTVEGNQYTRVIYIAQVALCGPDVPAQLLSSLSKRQPLVI 196 (205)
T ss_pred CccCCCCcEEEEEEEEECCCCCCCCHHHHhHHHHhccHHH
Confidence 9 999999999999999944999999999999987643
No 13
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.97 E-value=6.4e-29 Score=240.25 Aligned_cols=182 Identities=16% Similarity=0.152 Sum_probs=164.7
Q ss_pred CCCCEEEec-CCCeEEEEEeCCCCCCcEEEEEEEEEeCCHHH-HHHHHhhcccccccccccccCccccccceeeeeeecC
Q 006208 85 HGEWKLKQD-TEEFRVMYREGPHGTPFHSLLVEGYVEAPLDV-CLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVG 162 (657)
Q Consensus 85 ~egWkL~kD-kdGIkVyYR~~peGS~lks~K~EgvIDAPl~~-LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~ 162 (657)
.++|++..+ ++|+.+|+|..++++.++.+|+++++++++.. +..++.|.+.+++|+++|. +++.|++++.+
T Consensus 18 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~-------~~~~ie~~~~~ 90 (206)
T smart00234 18 EPGWVLSSENENGDEVRSILSPGRSPGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVA-------KAETLEVIDNG 90 (206)
T ss_pred CCccEEccccCCcceEEEEccCCCCceEEEEEEEEEecChHHHHHHHHhcccchhhCchhcc-------cEEEEEEECCC
Confidence 568999997 79999999998655889999999999999875 8899999999999999999 89999999988
Q ss_pred CeEEEEEEeecc-cccCcceEEEEEEEeeeCCCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEe-eeeEEEEE
Q 006208 163 EQISLVRVKVPW-PLSCREGLVHYFSFDYFQDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDL-VGGFALQK 240 (657)
Q Consensus 163 e~IvY~rvklPW-PLSnRDaVl~~~~~d~ledGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi-~Ggf~IqP 240 (657)
..++|+..++|| |+++||+|+...... .+++.++|+.+|+.+ +..|+.+|+||+.. .+||.|+|
T Consensus 91 ~~i~~~~~~~~~~p~~~RDfv~~r~~~~-~~~~~~vi~~~Sv~~-------------~~~p~~~~~VR~~~~~~~~~i~p 156 (206)
T smart00234 91 TVIYHYVSKFVAGPVSPRDFVFVRYWRE-LVDGSYAVVDVSVTH-------------PTSPPTSGYVRAENLPSGLLIEP 156 (206)
T ss_pred CeEEEEEEecccCcCCCCeEEEEEEEEE-cCCCcEEEEEEECCC-------------CCCCCCCCceEEEEeceEEEEEE
Confidence 999999999999 999999999976654 457778888888754 56788899999999 89999999
Q ss_pred ecCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 006208 241 VTEERSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFKLYQKAVVSV 288 (657)
Q Consensus 241 lg~nkT~Vtyva~vDPKG~~IP~WLINfvaKql~~~tLk~LqKaa~kv 288 (657)
++++.|.|+|++++|||| .||.||+|.+++..++.+++.+++++++.
T Consensus 157 ~~~~~t~vt~~~~~D~~G-~iP~~lvn~~~~~~~~~~~~~~~~~~~~~ 203 (206)
T smart00234 157 LGNGPSKVTWVSHADLKG-WLPHWLVRSLIKSGLAEFAKTWVATLQKH 203 (206)
T ss_pred CCCCCeEEEEEEEEecCC-CccceeehhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999 89999999999999999999998888654
No 14
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=99.96 E-value=1.4e-28 Score=249.07 Aligned_cols=161 Identities=14% Similarity=0.209 Sum_probs=146.5
Q ss_pred CCCCEEEecCCCeEEEEEeCCCCCCcEEEEEEEEEeCCHHHHHHHHhhcccccccccccccCccccccceeeeeeecCCe
Q 006208 85 HGEWKLKQDTEEFRVMYREGPHGTPFHSLLVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQ 164 (657)
Q Consensus 85 ~egWkL~kDkdGIkVyYR~~peGS~lks~K~EgvIDAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e~ 164 (657)
.++|++..+++||+||+|. ++++++||+++.+++|+..+++||.|++.+++|+++|. ++++|++++.++.
T Consensus 55 ~~~W~l~~dkdgIkVytr~---~s~~l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~~-------e~~vI~qld~~~~ 124 (236)
T cd08914 55 KSGWEVTSTVEKIKIYTLE---EHDVLSVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHFL-------SCEVIDWVSEDDQ 124 (236)
T ss_pred cCCCEEEEccCCEEEEEec---CCCcEEEEEEEEEcCCHHHHHHHHhChhhhchhHHhhc-------eEEEEEEeCCCcC
Confidence 6799999999999999995 67799999999999999999999999999999999999 9999999999887
Q ss_pred EEEEEEeecc-cccCcceEEEEEEEeeeCCC-eEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEe-eeeEEEEEe
Q 006208 165 ISLVRVKVPW-PLSCREGLVHYFSFDYFQDG-LVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDL-VGGFALQKV 241 (657)
Q Consensus 165 IvY~rvklPW-PLSnRDaVl~~~~~d~ledG-svVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi-~Ggf~IqPl 241 (657)
+|+.++.|| |+++||+|++.......++| .++|.++|+++ +.+|+.+|+||+.. ..||.|+|+
T Consensus 125 -vY~~~~pPw~Pvk~RD~V~~~s~~~~~~dg~~~~I~~~SVp~-------------~~~Pp~kg~VRv~~~~~G~~I~pl 190 (236)
T cd08914 125 -IYHITCPIVNNDKPKDLVVLVSRRKPLKDGNTYVVAVKSVIL-------------PSVPPSPQYIRSEIICAGFLIHAI 190 (236)
T ss_pred -EEEEecCCCCCCCCceEEEEEEEEecCCCCCEEEEEEeeccc-------------ccCCCCCCcEEeEEEEEEEEEEEc
Confidence 788899999 99999999987655445466 48888898875 57999999999999 899999999
Q ss_pred cCCeEEEEEEEEEcCCCCCCCHHHHHHHHH
Q 006208 242 TEERSYFRTIANMDIKLDFVPPSLINFISR 271 (657)
Q Consensus 242 g~nkT~Vtyva~vDPKG~~IP~WLINfvaK 271 (657)
++++|.|+|++|+|| | .||.|++|...-
T Consensus 191 ~~~~~~VtY~~~~dP-g-~lp~~~~n~~~~ 218 (236)
T cd08914 191 DSNSCTVSYFNQISA-S-ILPYFAGNLGGW 218 (236)
T ss_pred CCCcEEEEEEEEcCC-c-cchheEEecchh
Confidence 999999999999999 7 899999998643
No 15
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.96 E-value=1.8e-27 Score=223.46 Aligned_cols=177 Identities=21% Similarity=0.356 Sum_probs=161.2
Q ss_pred CCCEEEecCCCeEEEEEeCCCCCCcEEEEEEEEEeCCHHHHHHHHhhcccccccccccccCccccccceeeeeeecCCeE
Q 006208 86 GEWKLKQDTEEFRVMYREGPHGTPFHSLLVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQI 165 (657)
Q Consensus 86 egWkL~kDkdGIkVyYR~~peGS~lks~K~EgvIDAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e~I 165 (657)
++|++..+++|++||+|..+ +++++.+|++++|++|+..+++++.|.+.+++|.+++. ++++|++++.+..+
T Consensus 15 ~~W~~~~~~~~v~vy~~~~~-~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~-------~~~vl~~~~~~~~i 86 (193)
T cd00177 15 EGWKLVKEKDGVKIYTKPYE-DSGLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFE-------EFEVIEEIDEHTDI 86 (193)
T ss_pred CCeEEEEECCcEEEEEecCC-CCCceeEEEEEEECCCHHHHHHHHhCCchhhchhhcce-------EEEEEEEeCCCeEE
Confidence 58999999999999999985 77899999999999999999999999999999999998 89999999888899
Q ss_pred EEEEEeecccccCcceEEEEEEEeeeCCCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEe-eeeEEEEEecCC
Q 006208 166 SLVRVKVPWPLSCREGLVHYFSFDYFQDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDL-VGGFALQKVTEE 244 (657)
Q Consensus 166 vY~rvklPWPLSnRDaVl~~~~~d~ledGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi-~Ggf~IqPlg~n 244 (657)
+|+.++.|||+++||+|+....... .++.+++++.|+++ +.+|+.+|+||+.. .+||.|+|++++
T Consensus 87 ~~~~~~~p~p~~~Rdfv~~~~~~~~-~~~~~~~~~~Si~~-------------~~~p~~~~~vR~~~~~~~~~i~~~~~~ 152 (193)
T cd00177 87 IYYKTKPPWPVSPRDFVYLRRRRKL-DDGTYVIVSKSVDH-------------DSHPKEKGYVRAEIKLSGWIIEPLDPG 152 (193)
T ss_pred EEEEeeCCCccCCccEEEEEEEEEc-CCCeEEEEEeecCC-------------CCCCCCCCcEEEEEEccEEEEEECCCC
Confidence 9999999999999999998765443 36788888888764 35788889999999 899999999999
Q ss_pred eEEEEEEEEEcCCCCCCCHHHHHHHHHHhHHHHHHHHHHHH
Q 006208 245 RSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFKLYQKAV 285 (657)
Q Consensus 245 kT~Vtyva~vDPKG~~IP~WLINfvaKql~~~tLk~LqKaa 285 (657)
+|+|++++++||+| .||.|++|.+++..+..+++.++.+.
T Consensus 153 ~~~vt~~~~~D~~g-~iP~~~~~~~~~~~~~~~~~~~~~~~ 192 (193)
T cd00177 153 KTKVTYVLQVDPKG-SIPKSLVNSAAKKQLASFLKDLRKAK 192 (193)
T ss_pred CEEEEEEEeeCCCC-CccHHHHHhhhhhccHHHHHHHHHhh
Confidence 99999999999999 89999999999999999998887653
No 16
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=99.95 E-value=6.4e-27 Score=231.61 Aligned_cols=178 Identities=17% Similarity=0.162 Sum_probs=151.4
Q ss_pred CCCCEEEecCCCeEEEEEeCCCCCCcEEEEEEEEEeCCHHHHHHHHhhcccc--cccccccccCccccccceeeeeeecC
Q 006208 85 HGEWKLKQDTEEFRVMYREGPHGTPFHSLLVEGYVEAPLDVCLCVSWESALY--TKWWPQYIFPQFKIITSNCLKKIRVG 162 (657)
Q Consensus 85 ~egWkL~kDkdGIkVyYR~~peGS~lks~K~EgvIDAPl~~LLAVL~DvDLy--k~WvPq~k~ptf~i~ESkvLkkis~~ 162 (657)
.++|++.++++|++||+|..++ .+-+.||++|+++++++.++++|+|.+.+ ++|.++|. +.++|++++.+
T Consensus 21 ~~~W~~~~~~~~i~v~~~~~~~-~~~~~~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~-------~~~vle~id~~ 92 (208)
T cd08903 21 ESGWKTCRRTNEVAVSWRPSAE-FAGNLYKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVK-------DFEVVEAISDD 92 (208)
T ss_pred ccCCEEEEcCCCEEEEeeecCC-CCCcEEEEEEEecCCHHHHHHHHHhccchhhhhhhhccc-------cEEEEEEecCC
Confidence 4589999999999999995321 11244999999999999999999988755 99999999 99999999976
Q ss_pred CeEEEEEEeeccc----ccCcceEEEEEEEeeeCCCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEe-eeeEE
Q 006208 163 EQISLVRVKVPWP----LSCREGLVHYFSFDYFQDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDL-VGGFA 237 (657)
Q Consensus 163 e~IvY~rvklPWP----LSnRDaVl~~~~~d~ledGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi-~Ggf~ 237 (657)
..++|+ ++||| +++||+|++..... .++|.+++.+.|+++ +.+|+.+|+||+.. .+||.
T Consensus 93 ~~i~~~--~~p~~~~~~vs~RDfV~~~~~~~-~~d~~i~i~~~sv~h-------------~~~P~~~~~VR~~~~~~g~~ 156 (208)
T cd08903 93 VSVCRT--VTPSAAMKIISPRDFVDVVLVKR-YEDGTISSNATNVEH-------------PLCPPQAGFVRGFNHPCGCF 156 (208)
T ss_pred EEEEEE--ecchhcCCCcCCCceEEEEEEEe-cCCceEEEeEEeccC-------------CCCCCCCCeEEEeeeccEEE
Confidence 666555 88998 99999999876543 467888877777654 57999999999977 47777
Q ss_pred EEEe--cCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHh
Q 006208 238 LQKV--TEERSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFKLYQKAVVS 287 (657)
Q Consensus 238 IqPl--g~nkT~Vtyva~vDPKG~~IP~WLINfvaKql~~~tLk~LqKaa~k 287 (657)
++|+ ++++|.|+|++++|||| .||.||+|.++.+.+..+|..|++++..
T Consensus 157 ~~~~~~~~~~t~v~~~~~~DpkG-~iP~~lvn~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08903 157 CEPVPGEPDKTQLVSFFQTDLSG-YLPQTVVDSFFPASMAEFYNNLTKAVKA 207 (208)
T ss_pred EEECCCCCCceEEEEEEEeccCC-CcCHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 7777 67899999999999999 9999999999999999999999999865
No 17
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=99.95 E-value=7.2e-27 Score=237.30 Aligned_cols=166 Identities=11% Similarity=0.111 Sum_probs=147.1
Q ss_pred CCCCEEEecCCCeEEEEEeCCCCCCcEEEEEEEEEeCCHHHHHHHHhhcccccccccccccCccccccceeeeeeecCCe
Q 006208 85 HGEWKLKQDTEEFRVMYREGPHGTPFHSLLVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQ 164 (657)
Q Consensus 85 ~egWkL~kDkdGIkVyYR~~peGS~lks~K~EgvIDAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e~ 164 (657)
.++|++.++++||+||+++ ++.+++||+++++++|+..++++|.|++.+++|+++|. ++++|++++.+..
T Consensus 58 ~~~W~l~~~~~gI~Vyt~~---~s~~~~fK~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~~-------e~~vIe~id~~~~ 127 (240)
T cd08913 58 KDNWVLSSEKNQVRLYTLE---EDKFLSFKVEMVVHVDAAQAFLLLSDLRRRPEWDKHYR-------SCELVQQVDEDDA 127 (240)
T ss_pred cCCCEEEEccCCEEEEEEe---CCCccEEEEEEEEcCCHHHHHHHHhChhhhhhhHhhcc-------EEEEEEecCCCcE
Confidence 5689999999999999966 57789999999999999999999999999999999999 9999999998775
Q ss_pred EEEEEEeecc--cccCcceEEEEEEEeeeCCC-eEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEe-eeeEEEEE
Q 006208 165 ISLVRVKVPW--PLSCREGLVHYFSFDYFQDG-LVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDL-VGGFALQK 240 (657)
Q Consensus 165 IvY~rvklPW--PLSnRDaVl~~~~~d~ledG-svVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi-~Ggf~IqP 240 (657)
+|.....|| |+++||+|++.......++| .++|..+++.+ +.+|+.+|+||+.. .|+|.|+|
T Consensus 128 -vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~g~~yii~~~sv~~-------------P~~Pp~kgyVR~~~~~ggw~i~p 193 (240)
T cd08913 128 -IYHVTSPSLSGHGKPQDFVILASRRKPCDNGDPYVIALRSVTL-------------PTHPPTPEYTRGETLCSGFCIWE 193 (240)
T ss_pred -EEEEecCCCCCCCCCCeEEEEEEEEeccCCCccEEEEEEEeec-------------CCCCCCCCcEEeeecccEEEEEE
Confidence 698998898 99999999997654434444 56677777643 45899999999999 89999999
Q ss_pred ecCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHhHHH
Q 006208 241 VTEERSYFRTIANMDIKLDFVPPSLINFISRQLIGN 276 (657)
Q Consensus 241 lg~nkT~Vtyva~vDPKG~~IP~WLINfvaKql~~~ 276 (657)
+++++|.|+|+.++|| | .||.|++|.++...++.
T Consensus 194 ~~~~~t~vtY~~~~dP-G-~LP~~~~N~~~~~~p~~ 227 (240)
T cd08913 194 ESDQLTKVSYYNQATP-G-VLPYISTDIAGLSSEFY 227 (240)
T ss_pred CCCCcEEEEEEEEeCC-c-cccHHHhhhhhhccchh
Confidence 9999999999999999 5 89999999999998764
No 18
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=99.95 E-value=4e-26 Score=224.01 Aligned_cols=176 Identities=18% Similarity=0.192 Sum_probs=152.6
Q ss_pred CCCCEEEecCCCeEEEEEeCCCCCCcEEEEEEEEEeCCHHHHHHHHhh--cccccccccccccCccccccceeeeeeecC
Q 006208 85 HGEWKLKQDTEEFRVMYREGPHGTPFHSLLVEGYVEAPLDVCLCVSWE--SALYTKWWPQYIFPQFKIITSNCLKKIRVG 162 (657)
Q Consensus 85 ~egWkL~kDkdGIkVyYR~~peGS~lks~K~EgvIDAPl~~LLAVL~D--vDLyk~WvPq~k~ptf~i~ESkvLkkis~~ 162 (657)
.++|++.++++|++||+|..+ +...+.+|++|.|+++++.++.++.| .+.+++|.+.|. ++++|++++.+
T Consensus 21 ~~~W~~~~~~~~i~v~~~~~~-~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~~~~-------~~~~le~id~~ 92 (206)
T cd08867 21 TDGWKVLKTVKNITVSWKPST-EFTGHLYRAEGIVDALPEKVIDVIIPPCGGLRLKWDKSLK-------HYEVLEKISED 92 (206)
T ss_pred cCCcEEEEcCCCcEEEEecCC-CCCCEEEEEEEEEcCCHHHHHHHHHhcCcccccccccccc-------ceEEEEEeCCC
Confidence 358999999999999999753 33346799999999999999999999 889999999998 99999999988
Q ss_pred CeEEEEEEeeccc----ccCcceEEEEEEEeeeCCCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEe-eeeEE
Q 006208 163 EQISLVRVKVPWP----LSCREGLVHYFSFDYFQDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDL-VGGFA 237 (657)
Q Consensus 163 e~IvY~rvklPWP----LSnRDaVl~~~~~d~ledGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi-~Ggf~ 237 (657)
..++|+ ..||| +++||+|+...... .+++.+++...|+.+ +..|+.+|+||+.. .+||.
T Consensus 93 ~~i~~~--~~p~~~~~~vs~RDfV~~~~~~~-~~~~~~~i~~~Sv~h-------------p~~p~~~~~VR~~~~~~g~~ 156 (206)
T cd08867 93 LCVGRT--ITPSAAMGLISPRDFVDLVYVKR-YEDNQWSSSGKSVDI-------------PERPPTPGFVRGYNHPCGYF 156 (206)
T ss_pred eEEEEE--EccccccCccCCcceEEEEEEEE-eCCCeEEEEEEeccC-------------CCCCCCCCcEEEEeecCEEE
Confidence 877777 56775 89999998765433 345677777777643 56899999999999 89999
Q ss_pred EEEec--CCeEEEEEEEEEcCCCCCCCHHHHHHHHHHhHHHHHHHHHHHH
Q 006208 238 LQKVT--EERSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFKLYQKAV 285 (657)
Q Consensus 238 IqPlg--~nkT~Vtyva~vDPKG~~IP~WLINfvaKql~~~tLk~LqKaa 285 (657)
|+|++ +++|.+++++++|||| .||.||+|.++.+.+..+++.|++.+
T Consensus 157 i~p~~~~~~~t~~~~~~~~DpkG-~iP~~lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 157 CSPLKGSPDKSFLVLYVQTDLRG-MIPQSLVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred EEECCCCCCceEEEEEEEeccCC-CCcHHHHHhhhhhhHHHHHHHHHHhc
Confidence 99986 6789999999999999 99999999999999999999999975
No 19
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=99.95 E-value=9.4e-27 Score=235.80 Aligned_cols=158 Identities=13% Similarity=0.112 Sum_probs=141.5
Q ss_pred CCCCEEEecCCCeEEEEEeCCCCCCcEEEEEEEEEeCCHHHHHHHHhhcccccccccccccCccccccceeeeeeecCCe
Q 006208 85 HGEWKLKQDTEEFRVMYREGPHGTPFHSLLVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQ 164 (657)
Q Consensus 85 ~egWkL~kDkdGIkVyYR~~peGS~lks~K~EgvIDAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e~ 164 (657)
.++|++.++++||+||+|. ++++++||+++++++|+..++++|.|.+.+++|+++|. +.++|++++.+..
T Consensus 54 ~~~W~l~~~k~gIkVytr~---~s~~l~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~~~~-------e~evI~~id~d~~ 123 (235)
T cd08873 54 KSDWTVASSTTSVTLYTLE---QDGVLSFCVELKVQTCASDAFDLLSDPFKRPEWDPHGR-------SCEEVKRVGEDDG 123 (235)
T ss_pred cCCCEEEEcCCCEEEEEec---CCCceEEEEEEEecCCHHHHHHHHhCcchhhhhhhccc-------EEEEEEEeCCCcE
Confidence 6789999999999999998 47789999999999999999999999999999999999 9999999999999
Q ss_pred EEEEEEeecccccCcceEEEEEEEeeeCC-CeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEe-eeeEEEEEec
Q 006208 165 ISLVRVKVPWPLSCREGLVHYFSFDYFQD-GLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDL-VGGFALQKVT 242 (657)
Q Consensus 165 IvY~rvklPWPLSnRDaVl~~~~~d~led-GsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi-~Ggf~IqPlg 242 (657)
++|+++.+|||+++||+|++.......++ +.++|.++|+++ +.+|+.+|+||+.. .|||.|+|++
T Consensus 124 iyy~~~p~PwPvk~RDfV~~~s~~~~~~~~~~~~I~~~SV~h-------------~~~Pp~kgyVR~~~~~ggW~I~p~~ 190 (235)
T cd08873 124 IYHTTMPSLTSEKPNDFVLLVSRRKPATDGDPYKVAFRSVTL-------------PRVPQTPGYSRTEVACAGFVIRQDC 190 (235)
T ss_pred EEEEEcCCCCCCCCceEEEEEEEEeccCCCCeEEEEEeeeec-------------ccCCCCCCeEEEEEEeeeEEEEECC
Confidence 99999999999999999999765443343 458888888864 57999999999999 8999999999
Q ss_pred CCeEEEEEEEEEcCCCCCCCHHHHH
Q 006208 243 EERSYFRTIANMDIKLDFVPPSLIN 267 (657)
Q Consensus 243 ~nkT~Vtyva~vDPKG~~IP~WLIN 267 (657)
+++|.|+|++|+|||. +|-.--|
T Consensus 191 ~~~t~VtY~~~~dPg~--~~~~~~~ 213 (235)
T cd08873 191 GTCTEVSYYNETNPKL--LSYVTCN 213 (235)
T ss_pred CCcEEEEEEEEcCCCc--cceeeec
Confidence 9999999999999977 5544333
No 20
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.94 E-value=7.9e-26 Score=217.97 Aligned_cols=182 Identities=23% Similarity=0.379 Sum_probs=155.4
Q ss_pred CCCCEEEecCCCeEEEEEeC-CCC-CCcEEEEEEEEEeCCHHHHHHHHhhcccccccccccccCccccccceeeeeeecC
Q 006208 85 HGEWKLKQDTEEFRVMYREG-PHG-TPFHSLLVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVG 162 (657)
Q Consensus 85 ~egWkL~kDkdGIkVyYR~~-peG-S~lks~K~EgvIDAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~ 162 (657)
.++|++..+.++..++|+.. +++ .+++.+|+++++++++..++..+.+... +|.+++. +.++|+.++.+
T Consensus 18 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~--~Wd~~~~-------~~~~le~~~~~ 88 (206)
T PF01852_consen 18 EDGWKLYKDKKNGDVYYKKVSPSDSCPIKMFKAEGVVPASPEQVVEDLLDDRE--QWDKMCV-------EAEVLEQIDED 88 (206)
T ss_dssp CTTCEEEEEETTTCEEEEEEECSSSTSCEEEEEEEEESSCHHHHHHHHHCGGG--HHSTTEE-------EEEEEEEEETT
T ss_pred CCCCeEeEccCCCeEEEEEeCccccccceEEEEEEEEcCChHHHHHHHHhhHh--hcccchh-------hheeeeecCCC
Confidence 56899999665555555544 223 3899999999999999866666665555 9999998 99999999999
Q ss_pred CeEEEEEEeecc--cccCcceEEEEEEEeeeCCCeEEEEEecccccccccccCCCCCCCCCCC-CCCeEEEEe-eeeEEE
Q 006208 163 EQISLVRVKVPW--PLSCREGLVHYFSFDYFQDGLVVVLINSISDLKSIDKSTHGFTSDGIPE-AKDVVRVDL-VGGFAL 238 (657)
Q Consensus 163 e~IvY~rvklPW--PLSnRDaVl~~~~~d~ledGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe-~KGvVRIdi-~Ggf~I 238 (657)
..++|+.+++|| |+++||+|+...... ..++.++|+.+|+.+ +..|+ .+|+||+.. .+||.|
T Consensus 89 ~~i~~~~~~~~~~~p~~~RDfv~~~~~~~-~~~~~~~i~~~Si~~-------------~~~~~~~~~~VR~~~~~s~~~i 154 (206)
T PF01852_consen 89 TDIVYFVMKSPWPGPVSPRDFVFLRSWRK-DEDGTYVIVSRSIDH-------------PQYPPNSKGYVRAEILISGWVI 154 (206)
T ss_dssp EEEEEEEEE-CTTTTSSEEEEEEEEEEEE-CTTSEEEEEEEEEEB-------------TTSSTT-TTSEEEEEESEEEEE
T ss_pred CeEEEEEecccCCCCCCCcEEEEEEEEEE-eccceEEEEEeeecc-------------ccccccccCcceeeeeeEeEEE
Confidence 999999999999 999999999876554 568899999999864 45776 799999999 899999
Q ss_pred EEecCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhcC
Q 006208 239 QKVTEERSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFKLYQKAVVSVST 290 (657)
Q Consensus 239 qPlg~nkT~Vtyva~vDPKG~~IP~WLINfvaKql~~~tLk~LqKaa~kv~~ 290 (657)
+|++++.|.|+|++++|||| .||+|++|.++++.++.+++.+++++++...
T Consensus 155 ~~~~~~~~~vt~~~~~D~~G-~iP~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 205 (206)
T PF01852_consen 155 RPLGDGRTRVTYVSQVDPKG-WIPSWLVNMVVKSQPPNFLKNLRKALKKQKK 205 (206)
T ss_dssp EEETTCEEEEEEEEEEESSS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred EEccCCCceEEEEEEECCCC-CChHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999 9999999999999999999999999988753
No 21
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=99.94 E-value=1e-25 Score=224.05 Aligned_cols=168 Identities=15% Similarity=0.190 Sum_probs=149.2
Q ss_pred CCCEEEecCCCeEEEEEeCCCCCCcEEEEEEEEEeCCHHHHHHHHhhcccccccccccccCccccccceeeeeeecCCeE
Q 006208 86 GEWKLKQDTEEFRVMYREGPHGTPFHSLLVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQI 165 (657)
Q Consensus 86 egWkL~kDkdGIkVyYR~~peGS~lks~K~EgvIDAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e~I 165 (657)
.||.-....+++.+.|+...+|++++.+|+++.|++++..+++++.|. +++|+++|. ++++|++++.+..+
T Consensus 27 k~w~~~~~~~~~el~~~k~~~gs~l~~~r~~~~i~a~~~~vl~~lld~--~~~Wd~~~~-------e~~vIe~ld~~~~I 97 (204)
T cd08908 27 KGWVSYSTSEQAELSYKKVSEGPPLRLWRTTIEVPAAPEEILKRLLKE--QHLWDVDLL-------DSKVIEILDSQTEI 97 (204)
T ss_pred cCCcccCCCCcEEEEEeccCCCCCcEEEEEEEEeCCCHHHHHHHHHhh--HHHHHHHhh-------heEeeEecCCCceE
Confidence 478887777888888888878999999999999999999999999888 899999999 99999999999999
Q ss_pred EEEEEeecccccCcceEEEEEEEeeeCCCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEe-eeeEEEEEecCC
Q 006208 166 SLVRVKVPWPLSCREGLVHYFSFDYFQDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDL-VGGFALQKVTEE 244 (657)
Q Consensus 166 vY~rvklPWPLSnRDaVl~~~~~d~ledGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi-~Ggf~IqPlg~n 244 (657)
+|++++.|||+++||+|++..+...+.+|.++|.+.|+.+ +.+|+. +||+.. .|+|.|+|++++
T Consensus 98 ~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h-------------~~~P~~--~VR~~~~~~~w~i~P~g~g 162 (204)
T cd08908 98 YQYVQNSMAPHPARDYVVLRTWRTNLPKGACALLATSVDH-------------DRAPVA--GVRVNVLLSRYLIEPCGSG 162 (204)
T ss_pred EEEEccCCCCCCCcEEEEEEEEEEeCCCCeEEEEEeecCc-------------ccCCcC--ceEEEEEeeEEEEEECCCC
Confidence 9999999999999999999766666778889998888754 567755 589998 899999999999
Q ss_pred eEEEEEEEEEcCCCCCCCHHHHHHHHHHhHHHHH
Q 006208 245 RSYFRTIANMDIKLDFVPPSLINFISRQLIGNGF 278 (657)
Q Consensus 245 kT~Vtyva~vDPKG~~IP~WLINfvaKql~~~tL 278 (657)
+|.|+|++++|||| .||.|++|.+.--++..+.
T Consensus 163 ~t~vtyi~~~DPgG-~iP~W~~N~~g~~~~~~~~ 195 (204)
T cd08908 163 KSKLTYMCRIDLRG-HMPEWYTKSFGHLCAAEVV 195 (204)
T ss_pred cEEEEEEEEeCCCC-CCcHHHHhhHHHHHHHHHH
Confidence 99999999999999 9999999997765554433
No 22
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=99.92 E-value=1.2e-23 Score=209.50 Aligned_cols=168 Identities=15% Similarity=0.168 Sum_probs=149.4
Q ss_pred CCCEEEecCCCeEEEEEeCCCCCCcEEEEEEEEEeCCHHHHHHHHhhcccccccccccccCccccccceeeeeeecCCeE
Q 006208 86 GEWKLKQDTEEFRVMYREGPHGTPFHSLLVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQI 165 (657)
Q Consensus 86 egWkL~kDkdGIkVyYR~~peGS~lks~K~EgvIDAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e~I 165 (657)
.+|......+++.++|+...+|++++.+|+.+.|++|+..+|+++.+ .+++|+.+|. +++.+++++....+
T Consensus 27 k~w~~~~~~~~~e~~ykK~~d~~~lk~~r~~~ei~~~p~~VL~~vl~--~R~~WD~~~~-------~~~~ie~ld~~tdi 97 (205)
T cd08909 27 KGWISCSSSDNTELAYKKVGDGNPLRLWKVSVEVEAPPSVVLNRVLR--ERHLWDEDFL-------QWKVVETLDKQTEV 97 (205)
T ss_pred cCCcccCCcCCeEEEEecCCCCCceEEEEEEEEeCCCHHHHHHHHHh--hHhhHHhhcc-------eeEEEEEeCCCcEE
Confidence 47888888889999998887899999999999999999999887755 6999999998 99999999998999
Q ss_pred EEEEEeecccccCcceEEEEEEEeeeCCCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEe-eeeEEEEEecCC
Q 006208 166 SLVRVKVPWPLSCREGLVHYFSFDYFQDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDL-VGGFALQKVTEE 244 (657)
Q Consensus 166 vY~rvklPWPLSnRDaVl~~~~~d~ledGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi-~Ggf~IqPlg~n 244 (657)
+|+.++.|||+++||+|+...+...+.+|.++|++.|+.+ ...|+ +|+||+.. .+||+|+|++++
T Consensus 98 ~~y~~~~~~P~~~RD~v~~R~w~~~~~~G~~vi~~~Sv~H-------------~~~p~-~g~VRa~~~~~gylI~P~~~g 163 (205)
T cd08909 98 YQYVLNCMAPHPSRDFVVLRSWRTDLPKGACSLVSVSVEH-------------EEAPL-LGGVRAVVLDSQYLIEPCGSG 163 (205)
T ss_pred EEEEeecCCCCCCCEEEEEEEEEEeCCCCcEEEEEecCCC-------------CcCCC-CCcEEEEEEcCcEEEEECCCC
Confidence 9999999999999999999987766778999999999865 34665 58999999 899999999999
Q ss_pred eEEEEEEEEEcCCCCCCCHHHHHHHHHHhHHHH
Q 006208 245 RSYFRTIANMDIKLDFVPPSLINFISRQLIGNG 277 (657)
Q Consensus 245 kT~Vtyva~vDPKG~~IP~WLINfvaKql~~~t 277 (657)
+|+|+|++++|||| .+|.|++|.+.--++..+
T Consensus 164 ~trvt~i~~vDpkG-~~P~W~~n~~g~~~~~~~ 195 (205)
T cd08909 164 KSRLTHICRVDLKG-HSPEWYNKGFGHLCAAEA 195 (205)
T ss_pred CEEEEEEEEecCCC-CChHHHHHhHHHHHHHHH
Confidence 99999999999999 999999998775555443
No 23
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=99.90 E-value=2.8e-22 Score=199.36 Aligned_cols=177 Identities=13% Similarity=0.123 Sum_probs=156.2
Q ss_pred CCCEEEecCCCeEEEEEeCCCCCCcEEEEEEEEEeCCHHHHHHHHhhcccccccccccccCccccccceeeeeeecCCeE
Q 006208 86 GEWKLKQDTEEFRVMYREGPHGTPFHSLLVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQI 165 (657)
Q Consensus 86 egWkL~kDkdGIkVyYR~~peGS~lks~K~EgvIDAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e~I 165 (657)
+||++.+.++|+.||.|..+ ....+-+|++|+|+++++.+..++.+.+...+|.+.|. +.++|++++.+..|
T Consensus 22 ~gWk~~k~~~~~~v~~k~~~-~~~gkl~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~-------~~~iie~Id~~T~I 93 (204)
T cd08904 22 SGWKVVKTSKKITVSWKPSR-KYHGNLYRVEGIIPESPAKLIQFMYQPEHRIKWDKSLQ-------VYKMLQRIDSDTFI 93 (204)
T ss_pred cCCeEEecCCceEEEEEEcC-CCCceEEEEEEEecCCHHHHHHHHhccchhhhhccccc-------ceeeEEEeCCCcEE
Confidence 58999999999999999753 33458899999999999999999999999999999998 89999999999999
Q ss_pred EEEEEe-eccc-ccCcceEEEEEEEeeeCCCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEe-eeeEEEEEec
Q 006208 166 SLVRVK-VPWP-LSCREGLVHYFSFDYFQDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDL-VGGFALQKVT 242 (657)
Q Consensus 166 vY~rvk-lPWP-LSnRDaVl~~~~~d~ledGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi-~Ggf~IqPlg 242 (657)
+|.+.+ +||+ ++.||+|....+.. .+++.+++...|+.+ +..|+.+|+||... .+||.++|++
T Consensus 94 ~~~~~~~~~~~~vspRDfV~vr~~~r-~~~~~~ii~~~sv~H-------------p~~Pp~~g~VRa~n~~~G~~i~pl~ 159 (204)
T cd08904 94 CHTITQSFAMGSISPRDFVDLVHIKR-YEGNMNIVSSVSVEY-------------PQCPPSSNYIRGYNHPCGYVCSPLP 159 (204)
T ss_pred EEEecccccCCcccCceEEEEEEEEE-eCCCEEEEEEEeccc-------------CCCCCCCCcEEEeeeccEEEEEECC
Confidence 998765 5777 89999999876543 355778887777643 67999999999999 8999999997
Q ss_pred CC--eEEEEEEEEEcCCCCCCCHHHHHHHHHHhHHHHHHHHHHHH
Q 006208 243 EE--RSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFKLYQKAV 285 (657)
Q Consensus 243 ~n--kT~Vtyva~vDPKG~~IP~WLINfvaKql~~~tLk~LqKaa 285 (657)
++ +|.+++++++|||| .||.|+||.+..+..-.++..|++++
T Consensus 160 ~~p~~t~l~~~~~~DlkG-~lP~~vv~~~~~~~~~~f~~~~~~~~ 203 (204)
T cd08904 160 ENPAYSKLVMFVQPELRG-NLSRSVIEKTMPTNLVNLILDAKDGI 203 (204)
T ss_pred CCCCceEEEEEEEeCCCC-CCCHHHHHHHhHHHHHHHHHHHHHhc
Confidence 65 79999999999999 99999999999999999999998875
No 24
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=99.88 E-value=1.9e-21 Score=193.30 Aligned_cols=174 Identities=17% Similarity=0.169 Sum_probs=158.0
Q ss_pred CCCCEEEecCCCeEEEEEeCCCCCCcEEEEEEEEEeCC-HHHHHHHHhhcccccccccccccCccccccceeeeeeecCC
Q 006208 85 HGEWKLKQDTEEFRVMYREGPHGTPFHSLLVEGYVEAP-LDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGE 163 (657)
Q Consensus 85 ~egWkL~kDkdGIkVyYR~~peGS~lks~K~EgvIDAP-l~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e 163 (657)
..||......+|+.|+||..++|.+++-+|+...|.++ .+.|..||+| ++.|++.+. +++.+++++.+.
T Consensus 26 ~kgW~~~~~~~~vev~~kk~~d~~~l~lwk~s~ei~~~p~~vl~rvL~d---R~~WD~~m~-------e~~~Ie~Ld~n~ 95 (205)
T cd08907 26 FKGWHSAPGPDNTELACKKVGDGHPLRLWKVSTEVEAPPSVVLQRVLRE---RHLWDEDLL-------HSQVIEALENNT 95 (205)
T ss_pred cCCceeecCCCCcEEEEEeCCCCCceEEEEEEEEecCCCHHHHHHHhhc---hhhhhHHHH-------hhhhheeecCCC
Confidence 56999999999999999998889999999999999875 5678899999 999999998 999999999999
Q ss_pred eEEEEEEeecccccCcceEEEEEEEeeeCCCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEe-eeeEEEEEec
Q 006208 164 QISLVRVKVPWPLSCREGLVHYFSFDYFQDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDL-VGGFALQKVT 242 (657)
Q Consensus 164 ~IvY~rvklPWPLSnRDaVl~~~~~d~ledGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi-~Ggf~IqPlg 242 (657)
.|.|+.+++|-|+.+||+|+...+...++.|.++|+..|+.+ +..|+.+| ||+-. ..||+|+|.+
T Consensus 96 dI~yY~~~~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H-------------~~~pp~~g-VRa~~l~sgYlIep~g 161 (205)
T cd08907 96 EVYHYVTDSMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDH-------------DNPQLEAG-VRAVLLTSQYLIEPCG 161 (205)
T ss_pred EEEEEEecCCCCCCCceEEEEEEEccCCCCCCEEEEEecccC-------------CcCCCCCC-eEEEEEeccEEEEECC
Confidence 999999999999999999999988777777889999999864 56888888 99988 8999999999
Q ss_pred CCeEEEEEEEEEcCCCCCCCHHHHHHHHHHhHHHHHHHHHHH
Q 006208 243 EERSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFKLYQKA 284 (657)
Q Consensus 243 ~nkT~Vtyva~vDPKG~~IP~WLINfvaKql~~~tLk~LqKa 284 (657)
+++|+|+|++++||+| .+|.|+ |.+...++..-+..|+..
T Consensus 162 ~g~s~ltyi~rvD~rG-~~P~Wy-nk~~g~~~a~~l~~ir~s 201 (205)
T cd08907 162 MGRSRLTHICRADLRG-RSPDWY-NKVFGHLCAMEVARIRDS 201 (205)
T ss_pred CCCeEEEEEEEeCCCC-CCcHHH-HHhHHHHHHHHHHHHHhh
Confidence 9999999999999999 899999 998888888777777653
No 25
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=99.88 E-value=1.6e-21 Score=194.72 Aligned_cols=186 Identities=16% Similarity=0.225 Sum_probs=161.4
Q ss_pred cCCCCCEEEecCCCeEEEEEeCCCCCCcEEEEEEEEE-eCCHHHHHHHHhhcccccccccccccCccccccceeeeeee-
Q 006208 83 ASHGEWKLKQDTEEFRVMYREGPHGTPFHSLLVEGYV-EAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIR- 160 (657)
Q Consensus 83 ~s~egWkL~kDkdGIkVyYR~~peGS~lks~K~EgvI-DAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis- 160 (657)
..+.+|++..++.++.+||...| -++++.+|+.|++ |+++..++.+++|.+++++|+..+. +.+.|+...
T Consensus 26 ~~~~~We~~~~k~~~~i~~q~~~-~~g~~~Yk~~~vfeDvtp~~~~Dv~~D~eYRkkWD~~vi-------~~e~ie~d~~ 97 (219)
T KOG2761|consen 26 DAGQGWELVMDKSTPSIWRQRRP-KTGLYEYKSRTVFEDVTPEIVRDVQWDDEYRKKWDDMVI-------ELETIEEDPV 97 (219)
T ss_pred CcccchhhhcccCCceEEEEccc-CCCCEEEEEEEEEcCCCHHHHHHHHhhhHHHHHHHHHhh-------hheeeeecCC
Confidence 34669999999999999995444 3559999999998 8899999999999999999998887 788887754
Q ss_pred cCCeEEEEEEeecccccCcceEEEEEEEeeeCCCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEe-eeeEEEE
Q 006208 161 VGEQISLVRVKVPWPLSCREGLVHYFSFDYFQDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDL-VGGFALQ 239 (657)
Q Consensus 161 ~~e~IvY~rvklPWPLSnRDaVl~~~~~d~ledGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi-~Ggf~Iq 239 (657)
.+..++|+..++|+|+++||+|+.....+. ++..++|+.+++. +..+|+.++.||+.. ..||.|+
T Consensus 98 tg~~vv~w~~kfP~p~~~RdYV~~Rr~~~~-~~k~~~i~s~~v~-------------h~s~P~~~~~vRv~~~~s~~~I~ 163 (219)
T KOG2761|consen 98 TGTEVVYWVKKFPFPMSNRDYVYVRRWWES-DEKDYYIVSKSVQ-------------HPSYPPLKKKVRVTVYRSGWLIR 163 (219)
T ss_pred CCceEEEEEEeCCcccCCccEEEEEEEEec-CCceEEEEEeccc-------------CCCcCCcCCcEEEEEEEEEEEEE
Confidence 568999999999999999999998765543 3366677766654 467999999999999 8999998
Q ss_pred ----EecCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Q 006208 240 ----KVTEERSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFKLYQKAVVSVSTY 291 (657)
Q Consensus 240 ----Plg~nkT~Vtyva~vDPKG~~IP~WLINfvaKql~~~tLk~LqKaa~kv~~s 291 (657)
.-+++.|.+.|.++.||+| -||.|++|++++.+++..+++|.+++.+|..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~p~~-~iP~~~v~~~~~~gmp~~vkKm~~a~~~Y~~~ 218 (219)
T KOG2761|consen 164 VESRSGDEQGCACEYLYFHNPGG-GIPKWVVKLAVRKGMPGAVKKMEKALLAYQEK 218 (219)
T ss_pred cccccCCCCccEEEEEEEECCCC-CCcHHHHHHHHHhcChHHHHHHHHHHHhhhhc
Confidence 4567789999999999999 89999999999999999999999999998654
No 26
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=99.77 E-value=2.5e-17 Score=163.67 Aligned_cols=175 Identities=14% Similarity=0.150 Sum_probs=147.4
Q ss_pred CCCCEEEecCCCeEEEEEeCCCCCCcEEEEEEEEEeCCHHHHHHHHhhcccccccccccccCccccccceeeeeeecCCe
Q 006208 85 HGEWKLKQDTEEFRVMYREGPHGTPFHSLLVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQ 164 (657)
Q Consensus 85 ~egWkL~kDkdGIkVyYR~~peGS~lks~K~EgvIDAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e~ 164 (657)
..+|++.+.++|+.||.|+.+ ..+.+-+|+||+|+..+..+...+.+..++.+|.+.++ +.++|++++.+-.
T Consensus 22 ~~~Wkl~k~~~~~~v~~k~~~-ef~gkl~R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v~-------~~~Iie~Id~dt~ 93 (202)
T cd08902 22 EEEWRVAKKSKDVTVWRKPSE-EFGGYLYKAQGVVEDVYNRIVDHIRPGPYRLDWDSLMT-------SMDIIEEFEENCC 93 (202)
T ss_pred ccCcEEEEeCCCEEEEEecCC-cCCCceEEEEEEecCCHHHHHHHHhcccchhcccchhh-------heeHhhhhcCCcE
Confidence 458999999999999999764 34567899999999999999999999999999999999 8999999999888
Q ss_pred EE-EEEEeecccc-cCcceEEEEEEEeeeCCCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEe-eeeEEEEEe
Q 006208 165 IS-LVRVKVPWPL-SCREGLVHYFSFDYFQDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDL-VGGFALQKV 241 (657)
Q Consensus 165 Iv-Y~rvklPWPL-SnRDaVl~~~~~d~ledGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi-~Ggf~IqPl 241 (657)
++ |.+.+.||++ +.||+|....... .+++. +....|+++ ...|+ |+||... -+||.+.|+
T Consensus 94 I~~yvt~~~~~~iISpRDFVdv~~~~~-~~d~~-~s~gvs~~~-------------~~~pp--g~VRgen~p~g~i~~Pl 156 (202)
T cd08902 94 VMRYTTAGQLLNIISPREFVDFSYTTQ-YEDGL-LSCGVSIEY-------------EEARP--NFVRGFNHPCGWFCVPL 156 (202)
T ss_pred EEEEEcccCCcCccCccceEEEEEEEE-eCCCe-EEEEeeecC-------------CCCCC--CeEeecccccEEEEEEC
Confidence 86 9999999985 9999999766543 44564 444445432 22333 9999999 899999999
Q ss_pred cC--CeEEEEEEEEEcCCCCCCCHHHHHHHHHHhHHHHHHHHHHHH
Q 006208 242 TE--ERSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFKLYQKAV 285 (657)
Q Consensus 242 g~--nkT~Vtyva~vDPKG~~IP~WLINfvaKql~~~tLk~LqKaa 285 (657)
++ ++|.+++++++||+| .||..+||.+.-+..-.++..|+|++
T Consensus 157 ~~~p~k~~~t~~lq~DLkG-~LPqsiIdq~~~~~~~~F~~~Lrk~~ 201 (202)
T cd08902 157 KDNPSHSLLTGYIQTDLRG-MLPQSAVDTAMASTLVNFYSDLKKAL 201 (202)
T ss_pred CCCCCceEEEEEEEecCCC-CccHHHHHHHhhHHHHHHHHHHHHhc
Confidence 65 478899999999999 89999999999998889998888875
No 27
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=99.56 E-value=1.1e-13 Score=157.22 Aligned_cols=172 Identities=17% Similarity=0.204 Sum_probs=141.6
Q ss_pred CCCCEEEecCCCeEEEEEeCCC----CCCcEEEEEEEEEeCCHHHHHHHHhhcc-cccccccccccCccccccceeeeee
Q 006208 85 HGEWKLKQDTEEFRVMYREGPH----GTPFHSLLVEGYVEAPLDVCLCVSWESA-LYTKWWPQYIFPQFKIITSNCLKKI 159 (657)
Q Consensus 85 ~egWkL~kDkdGIkVyYR~~pe----GS~lks~K~EgvIDAPl~~LLAVL~DvD-Lyk~WvPq~k~ptf~i~ESkvLkki 159 (657)
...|++..-.+|++++-....- .+.-+.+|++|+|+++++.+..++++.+ .+.+|...+. +.++|+++
T Consensus 197 ~~~Wr~~~c~NGlRiF~e~~~~~~~~~~~~~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~~-------~~~vIE~I 269 (719)
T PLN00188 197 RKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSFQ-------YGSLVEEV 269 (719)
T ss_pred cCCeEEEEeeccceeehhhhccccccccCCceeEEEEEecCCHHHHHHHHhccCcccccchhccc-------ceEEEEEe
Confidence 4579999999999998655210 1123689999999999999999998877 8899999998 89999999
Q ss_pred ecCCeEEEEEEee---cccccCcceEEEEEEEeeeCCCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEe-eee
Q 006208 160 RVGEQISLVRVKV---PWPLSCREGLVHYFSFDYFQDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDL-VGG 235 (657)
Q Consensus 160 s~~e~IvY~rvkl---PWPLSnRDaVl~~~~~d~ledGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi-~Gg 235 (657)
+....|+|.+++. ||=++.||+|+..++.. .++|+++|+.+|+.+ +..|+.+|+||... .||
T Consensus 270 D~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr-~eDGsYvil~~Sv~H-------------p~cPP~kG~VRg~~~pGG 335 (719)
T PLN00188 270 DGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRR-NDDGSYVVLFRSREH-------------ENCGPQPGFVRAHLESGG 335 (719)
T ss_pred cCCeEEEEEEeccccccCccCcceeEEEEEEEE-cCCCcEEEeeeeeec-------------CCCCCCCCeEEEEEeCCE
Confidence 9999999999984 44679999999988764 578999999999754 68999999999999 899
Q ss_pred EEEEEecC----CeEEEEEEEEEcCCCCCCCHHHHHHHHHHhHHHHHH
Q 006208 236 FALQKVTE----ERSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFK 279 (657)
Q Consensus 236 f~IqPlg~----nkT~Vtyva~vDPKG~~IP~WLINfvaKql~~~tLk 279 (657)
|.|.|+.+ .+|.|++++++|++| ++|.|+-.| .+..+..+|.
T Consensus 336 wiIsPL~~~~g~~r~lv~~~lqtDlkG-W~~~y~~s~-~~~~~l~mL~ 381 (719)
T PLN00188 336 FNISPLKPRNGRPRTQVQHLMQIDLKG-WGVGYIPSF-QQHCLLQMLN 381 (719)
T ss_pred EEEEECCCCCCCCceEEEEEEEEccCc-cccccCccc-cccchHHHHH
Confidence 99999732 589999999999999 788776633 4444444443
No 28
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.42 E-value=2.1e-12 Score=117.65 Aligned_cols=135 Identities=9% Similarity=0.044 Sum_probs=106.8
Q ss_pred EEEEEEeCCHHHHHHHHhhcccccccccccccCccccccceeeeeeecCCeEEEEEEeecccccCcceEEEEEEEeeeCC
Q 006208 114 LVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQISLVRVKVPWPLSCREGLVHYFSFDYFQD 193 (657)
Q Consensus 114 K~EgvIDAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e~IvY~rvklPWPLSnRDaVl~~~~~d~led 193 (657)
.....|++|+..+++++.|++.|++|+|.|. ++++|++.+ ....+++ .+.||..+|+++.+.. ++ .+
T Consensus 2 ~~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~-------~~~vl~~~~-~~~~~~~--~~~~~~~~~~~~~~~~-~~--~~ 68 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVADVERYPEFLPWCT-------ASRVLERDE-DELEAEL--TVGFGGIRESFTSRVT-LV--PP 68 (138)
T ss_pred eEEEEcCCCHHHHHHHHHHHHhhhhhcCCcc-------ccEEEEcCC-CEEEEEE--EEeeccccEEEEEEEE-ec--CC
Confidence 3456789999999999999999999999999 889987654 3444554 4456678899887654 22 24
Q ss_pred CeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEe-eeeEEEEEecCCeEEEEEEEEEcCCCCCCCHHHHHHHHHH
Q 006208 194 GLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDL-VGGFALQKVTEERSYFRTIANMDIKLDFVPPSLINFISRQ 272 (657)
Q Consensus 194 GsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi-~Ggf~IqPlg~nkT~Vtyva~vDPKG~~IP~WLINfvaKq 272 (657)
+.+ ...++. | ++.. .|.|.|+|+++++|+|+|.++.+|++ .||.||+|.++++
T Consensus 69 ~~i--~~~~~~---------------------g--~~~~~~g~w~~~p~~~~~T~v~~~~~~~~~~-~l~~~l~~~~~~~ 122 (138)
T cd07813 69 ESI--EAELVD---------------------G--PFKHLEGEWRFKPLGENACKVEFDLEFEFKS-RLLEALAGLVFDE 122 (138)
T ss_pred CEE--EEEecC---------------------C--ChhhceeEEEEEECCCCCEEEEEEEEEEECC-HHHHHHHHHHHHH
Confidence 433 223221 1 2333 68899999999999999999999999 8999999999999
Q ss_pred hHHHHHHHHHHHHHh
Q 006208 273 LIGNGFKLYQKAVVS 287 (657)
Q Consensus 273 l~~~tLk~LqKaa~k 287 (657)
.+..++..|++.|..
T Consensus 123 ~~~~~l~~f~~~~~~ 137 (138)
T cd07813 123 VAKKMVDAFEKRAKQ 137 (138)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998865
No 29
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=99.40 E-value=4.6e-12 Score=126.92 Aligned_cols=119 Identities=14% Similarity=0.050 Sum_probs=86.7
Q ss_pred hhcccccccccccccCccccccceeeeeeecCC----eEEEEEEeecccccCcceEEEEE-EEeeeC--CCeEEEEEecc
Q 006208 131 WESALYTKWWPQYIFPQFKIITSNCLKKIRVGE----QISLVRVKVPWPLSCREGLVHYF-SFDYFQ--DGLVVVLINSI 203 (657)
Q Consensus 131 ~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e----~IvY~rvklPWPLSnRDaVl~~~-~~d~le--dGsvVIl~kSI 203 (657)
.-.++=++|+|.+.. -+.++|+..+.++ .++|+.+++|||+++||+|.+.. ..+ .. ++.++|-+ .+
T Consensus 60 ~h~~~E~~~i~~v~~-----~~~~~l~~~~~~~~~~~~v~~~~~~~P~Pl~~Rdfv~l~~~~~~-~~~~~~~i~vs~-p~ 132 (208)
T cd08864 60 THTEYEKEYVHEIGA-----YDLEPVEVDGEGDGVVTYLVQLTYKFPFPLSPRVFNELVHIKSD-LDPASEFMVVSL-PI 132 (208)
T ss_pred hHHhhhhhchhhhcc-----ceeEEeeecCCCccceEEEEEEEEECCCCCCCcEEEEEEEeecc-CCCCCeEEEEEE-Ee
Confidence 335566799999861 1356777777677 88999999999999999999876 332 33 34444432 22
Q ss_pred cccccccccCCCCCCCCCC-CCCCeEEEEe-ee-eEEEEEec-CCeEEEEEEE--EEcCCCCCCCHHHHHHHH
Q 006208 204 SDLKSIDKSTHGFTSDGIP-EAKDVVRVDL-VG-GFALQKVT-EERSYFRTIA--NMDIKLDFVPPSLINFIS 270 (657)
Q Consensus 204 ~D~~~~~~~~~G~~~d~IP-e~KGvVRIdi-~G-gf~IqPlg-~nkT~Vtyva--~vDPKG~~IP~WLINfva 270 (657)
.++.+| +.+|+||+.. .+ .|.+.|.+ ++.+.|++++ ++|||| .||.||+|.++
T Consensus 133 -------------~~~~~p~~~~~~Vr~~y~SgE~~~~~p~~~~~~~~vew~maT~sDpGG-~IP~wl~n~~~ 191 (208)
T cd08864 133 -------------TPPLVESLYENAVLGRYASVEKISYLPDADGKSNKVEWIMATRSDAGG-NIPRWLTKLTI 191 (208)
T ss_pred -------------cCCcCCccCCCcEEEEEEEEEEEEEcCccCCCcCCEEEEEEEeeCCCC-cCcHHHHhccC
Confidence 235788 7889999998 44 56688876 5555666666 999999 99999999844
No 30
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.31 E-value=9.4e-11 Score=106.65 Aligned_cols=135 Identities=16% Similarity=0.239 Sum_probs=95.1
Q ss_pred EEEEEEEeCCHHHHHHHHhhcccccccccccccCccccccceeeeeeecCCeEEEEEEeecccccCcceEEEEEEEeeeC
Q 006208 113 LLVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQISLVRVKVPWPLSCREGLVHYFSFDYFQ 192 (657)
Q Consensus 113 ~K~EgvIDAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e~IvY~rvklPWPLSnRDaVl~~~~~d~le 192 (657)
++++..|++|++.+.+++.|++.|++|+|.|. ++++|...+. ...+|+.. |+.++.. .+
T Consensus 1 ~~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~-------~~~~l~~~~~-~~~~~~~~--------~~~~~~~-~~---- 59 (144)
T cd08866 1 VVARVRVPAPPETVWAVLTDYDNLAEFIPNLA-------ESRLLERNGN-RVVLEQTG--------KQGILFF-KF---- 59 (144)
T ss_pred CeEEEEECCCHHHHHHHHhChhhHHhhCcCce-------EEEEEEcCCC-EEEEEEee--------eEEEEee-ee----
Confidence 35778899999999999999999999999999 8888865332 33344432 2212111 00
Q ss_pred CCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEE-------Ee-eeeEEEEEecC-CeEEEEEEEEEcCCCCCCCH
Q 006208 193 DGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRV-------DL-VGGFALQKVTE-ERSYFRTIANMDIKLDFVPP 263 (657)
Q Consensus 193 dGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRI-------di-~Ggf~IqPlg~-nkT~Vtyva~vDPKG~~IP~ 263 (657)
.+.+.+-+.- .|.....+|+ .. .|.|.|+|+++ ++|+|+|.++++|++ .+|.
T Consensus 60 ~~~v~~~~~~------------------~~~~~~~i~~~~~~g~~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~-~~p~ 120 (144)
T cd08866 60 EARVVLELRE------------------REEFPRELDFEMVEGDFKRFEGSWRLEPLADGGGTLLTYEVEVKPDF-FAPV 120 (144)
T ss_pred eEEEEEEEEE------------------ecCCCceEEEEEcCCchhceEEEEEEEECCCCCeEEEEEEEEEEeCC-CCCH
Confidence 0111111100 0001112222 23 68899999998 799999999999999 9999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHh
Q 006208 264 SLINFISRQLIGNGFKLYQKAVVS 287 (657)
Q Consensus 264 WLINfvaKql~~~tLk~LqKaa~k 287 (657)
||+|.+.+..+..+|+.|++.|++
T Consensus 121 ~l~~~~~~~~~~~~l~~lr~~ae~ 144 (144)
T cd08866 121 FLVEFVLRQDLPTNLLAIRAEAES 144 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998863
No 31
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.00 E-value=1.8e-08 Score=90.25 Aligned_cols=135 Identities=16% Similarity=0.160 Sum_probs=93.3
Q ss_pred EEEEEEEeCCHHHHHHHHhhcccccccccccccCccccccceeeeeeecCC-eEEEEEEeecccccCcceEEEEEEEeee
Q 006208 113 LLVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGE-QISLVRVKVPWPLSCREGLVHYFSFDYF 191 (657)
Q Consensus 113 ~K~EgvIDAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e-~IvY~rvklPWPLSnRDaVl~~~~~d~l 191 (657)
+.....|++|++.+.++|.|++.|++|+|.|. +++.+.....+. ...+..+..+ ++.. +++.... ..
T Consensus 4 v~~s~~i~ap~e~V~~~l~D~~~~~~w~p~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~---~~ 71 (140)
T cd07819 4 VSREFEIEAPPAAVMDVLADVEAYPEWSPKVK-------SVEVLLRDNDGRPEMVRIGVGAY-GIKD-TYALEYT---WD 71 (140)
T ss_pred EEEEEEEeCCHHHHHHHHhChhhhhhhCcceE-------EEEEeccCCCCCEEEEEEEEeee-eEEE-EEEEEEE---Ec
Confidence 44556789999999999999999999999998 677664433222 2334444433 4543 3333321 11
Q ss_pred CCCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEe-eeeEEEEEecCCeEEEEEEEEEcCCCCCCCHHHHHHHH
Q 006208 192 QDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDL-VGGFALQKVTEERSYFRTIANMDIKLDFVPPSLINFIS 270 (657)
Q Consensus 192 edGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi-~Ggf~IqPlg~nkT~Vtyva~vDPKG~~IP~WLINfva 270 (657)
+...+ .++... + .+... .+.|.|+|.++ .|.|+|.++.+|++ .+|.|++|++.
T Consensus 72 ~~~~i--~~~~~~---------------------~-~~~~~~~~~~~~~~~~~-~t~vt~~~~~~~~~-~~~~~~~~~~~ 125 (140)
T cd07819 72 GAGSV--SWTLVE---------------------G-EGNRSQEGSYTLTPKGD-GTRVTFDLTVELTV-PLPGFLKRKAE 125 (140)
T ss_pred CCCcE--EEEEec---------------------c-cceeEEEEEEEEEECCC-CEEEEEEEEEEecC-CCCHHHHHHhh
Confidence 12222 222211 0 12222 57799999988 69999999999999 89999999999
Q ss_pred HHhHHHHHHHHHHHH
Q 006208 271 RQLIGNGFKLYQKAV 285 (657)
Q Consensus 271 Kql~~~tLk~LqKaa 285 (657)
+.++..++..|++.|
T Consensus 126 ~~~~~~~~~~l~~~~ 140 (140)
T cd07819 126 PLVLDEALKGLKKRV 140 (140)
T ss_pred hHHHHHHHHhHhhhC
Confidence 999999999998764
No 32
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.99 E-value=2e-08 Score=90.37 Aligned_cols=139 Identities=14% Similarity=0.015 Sum_probs=99.6
Q ss_pred EEEEEEEEeCCHHHHHHHHhhcccccccccccccCccccccceeeeeeecCCeEEEEEEeecccccCcceEEEEEEEeee
Q 006208 112 SLLVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQISLVRVKVPWPLSCREGLVHYFSFDYF 191 (657)
Q Consensus 112 s~K~EgvIDAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e~IvY~rvklPWPLSnRDaVl~~~~~d~l 191 (657)
.++.+..|++|++.+.+++.|++.+.+|+|.|. ..+.+ +.+...++.++++ ||+..|.. .+.......
T Consensus 2 ~~~~~~~i~a~~e~v~~~l~D~~~~~~w~p~~~-------~~~~~---~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~ 69 (144)
T cd05018 2 KISGEFRIPAPPEEVWAALNDPEVLARCIPGCE-------SLEKI---GPNEYEATVKLKV-GPVKGTFK-GKVELSDLD 69 (144)
T ss_pred eeeeEEEecCCHHHHHHHhcCHHHHHhhccchh-------hcccc---CCCeEEEEEEEEE-ccEEEEEE-EEEEEEecC
Confidence 366778899999999999999999999999997 43333 3455666777776 77866644 232222212
Q ss_pred CCCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEeeeeEEEEEecCCeEEEEEEEEEcCCCCCC---CHHHHHH
Q 006208 192 QDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDLVGGFALQKVTEERSYFRTIANMDIKLDFV---PPSLINF 268 (657)
Q Consensus 192 edGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi~Ggf~IqPlg~nkT~Vtyva~vDPKG~~I---P~WLINf 268 (657)
+...+.+..... -| + .-....+.|.|.|. ++.|.|+|.++.+|+| .+ |.|++|.
T Consensus 70 ~~~~~~~~~~~~-----------------~~---~-~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g-~l~~l~~~~~~~ 126 (144)
T cd05018 70 PPESYTITGEGK-----------------GG---A-GFVKGTARVTLEPD-GGGTRLTYTADAQVGG-KLAQLGSRLIDG 126 (144)
T ss_pred CCcEEEEEEEEc-----------------CC---C-ceEEEEEEEEEEec-CCcEEEEEEEEEEEcc-ChhhhCHHHHHH
Confidence 234443332110 00 0 11234678999999 6789999999999998 66 9999999
Q ss_pred HHHHhHHHHHHHHHHHH
Q 006208 269 ISRQLIGNGFKLYQKAV 285 (657)
Q Consensus 269 vaKql~~~tLk~LqKaa 285 (657)
++++++..++++|++.+
T Consensus 127 ~~~~~~~~~~~~l~~~~ 143 (144)
T cd05018 127 AARKLINQFFENLASKI 143 (144)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999999875
No 33
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=98.62 E-value=7e-07 Score=80.13 Aligned_cols=125 Identities=14% Similarity=0.091 Sum_probs=89.7
Q ss_pred EeCCHHHHHHHHhhcccccccccccccCccccccceeeeeeecCCeEEEEEEeecccccCcceEEEEEEEeeeCCCeEEE
Q 006208 119 VEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQISLVRVKVPWPLSCREGLVHYFSFDYFQDGLVVV 198 (657)
Q Consensus 119 IDAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e~IvY~rvklPWPLSnRDaVl~~~~~d~ledGsvVI 198 (657)
|++|+..++.++.|.+.|+.|+|.|. ++++|++... .. +....+.+....+.+....... .... +
T Consensus 1 V~ap~~~V~~~i~D~e~~~~~~p~~~-------~v~vl~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~--~ 65 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYENYPRFFPPVK-------EVRVLERDGD-GM--RARWEVKFGGIKRSWTSRVTED---PPER--I 65 (130)
T ss_dssp ESS-HHHHHHHHTTGGGHHHHCTTEE-------EEEEEEEECC-EE--EEEEEECTTTTCEEEEEEEEEE---CTTT--E
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCc-------eEEEEEeCCC-eE--EEEEEEecCCEEEEEEEEEEEE---Eeee--e
Confidence 68999999999999999999999999 8888877543 22 2344455544455554443221 1222 2
Q ss_pred EEecccccccccccCCCCCCCCCCCCCCeEEEEe-eeeEEEEEecC----CeEEEEEEEEEcCCCCCCCHHHHHHHHHHh
Q 006208 199 LINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDL-VGGFALQKVTE----ERSYFRTIANMDIKLDFVPPSLINFISRQL 273 (657)
Q Consensus 199 l~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi-~Ggf~IqPlg~----nkT~Vtyva~vDPKG~~IP~WLINfvaKql 273 (657)
..+.+ .|- +.. .|.|.|+|.++ ++|.+++.+..+|++ .+|.+|++.+.+..
T Consensus 66 ~~~~~---------------------~g~--~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~ 121 (130)
T PF03364_consen 66 RFEQI---------------------SGP--FKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPG-PLPGFLARQFFRRD 121 (130)
T ss_dssp EEESS---------------------ETT--EEEEEEEEEEEEETTECCEEEEEEEEEEEEETSS-SSHHHHHHHHHHHH
T ss_pred eeeec---------------------CCC--chhcEEEEEEEECCCCcCCCEEEEEEEEEEecCc-HhHHHHHHHHHHHH
Confidence 22111 111 233 68899999995 679999999999999 89999999999999
Q ss_pred HHHHHHHHH
Q 006208 274 IGNGFKLYQ 282 (657)
Q Consensus 274 ~~~tLk~Lq 282 (657)
...++++|+
T Consensus 122 ~~~~~~~~~ 130 (130)
T PF03364_consen 122 LRQMLEAFR 130 (130)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhC
Confidence 999998875
No 34
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=98.60 E-value=1.2e-06 Score=89.75 Aligned_cols=157 Identities=17% Similarity=0.168 Sum_probs=123.6
Q ss_pred cEEEEEEEEEeCCHHHHHHHHhhcccccccccccccCccccccceeeeeeecC--------CeEEEEEEeecccc-cCcc
Q 006208 110 FHSLLVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVG--------EQISLVRVKVPWPL-SCRE 180 (657)
Q Consensus 110 lks~K~EgvIDAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~--------e~IvY~rvklPWPL-SnRD 180 (657)
.-+=|..|+|...+..|+.+|.|...+.+-+|.. +..+..++.++-+ =+++|.++.+|-|| ..||
T Consensus 59 ~eASR~~glV~m~~~~lVe~lmD~~kW~~~Fp~i------v~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re 132 (229)
T cd08875 59 TEASRACGLVMMNAIKLVEILMDVNKWSELFPGI------VSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTRE 132 (229)
T ss_pred EEEEeeeEEEecCHHHHHHHHhChhhhhhhhhhh------cceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCe
Confidence 3466888999999999999999987554433322 1256666666554 36899999999996 7999
Q ss_pred eEEEEEEEeeeCCCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEe-eeeEEEEEecCCeEEEEEEEEEc----
Q 006208 181 GLVHYFSFDYFQDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDL-VGGFALQKVTEERSYFRTIANMD---- 255 (657)
Q Consensus 181 aVl~~~~~d~ledGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi-~Ggf~IqPlg~nkT~Vtyva~vD---- 255 (657)
+++..+- ..+++|.++|+-.|+... ...|..++++|.+. -+||+|+|+++|.|+|+++-|+|
T Consensus 133 ~~fLRyc-~~l~dG~w~VvdvSld~~------------~~~p~~~~~~r~~~~PSGcLIq~~~nG~SkVtwVeH~e~d~~ 199 (229)
T cd08875 133 FYFLRYC-KQLEDGLWAVVDVSIDGV------------QTAPPPASFVRCRRLPSGCLIQDMPNGYSKVTWVEHVEVDEK 199 (229)
T ss_pred EEEEEEE-EEeCCCeEEEEEEeeccc------------ccCCCCCCccEEEEecCcEEEEECCCCceEEEEEEEEeccCC
Confidence 9998765 347799999987787531 14577789999999 89999999999999999999998
Q ss_pred CCCCCCCHHHHHHHHHHhHHHHHHHHHHHHH
Q 006208 256 IKLDFVPPSLINFISRQLIGNGFKLYQKAVV 286 (657)
Q Consensus 256 PKG~~IP~WLINfvaKql~~~tLk~LqKaa~ 286 (657)
|-. .+|--+++-..-..+...+..|+++|+
T Consensus 200 ~~~-~l~~~l~~sg~AfgA~rw~a~lqRqce 229 (229)
T cd08875 200 PVH-LLYRYLVSSGLAFGATRWVATLQRQCE 229 (229)
T ss_pred ccc-ccchhhhhhhHHHHHHHHHHHHHHhcC
Confidence 444 788888998888888888888888763
No 35
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=98.56 E-value=3.1e-07 Score=101.03 Aligned_cols=183 Identities=16% Similarity=0.207 Sum_probs=135.9
Q ss_pred CCCCEEEecCCCeEEEEEeCCC-CCCcEEEEEEEEEeC-CHHHHHHHHhhcccccccccccccCccccccceeeeeeecC
Q 006208 85 HGEWKLKQDTEEFRVMYREGPH-GTPFHSLLVEGYVEA-PLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVG 162 (657)
Q Consensus 85 ~egWkL~kDkdGIkVyYR~~pe-GS~lks~K~EgvIDA-Pl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~ 162 (657)
++.|++..+...+++|.|...+ |..+-.+|+.-.+++ ....++--++++++...|..-.. ...+++.++++
T Consensus 402 d~nwqlFaeegemkmy~re~eeng~~~Dplka~hav~gvta~e~chyf~~~~~rndwettle-------~~~vve~is~d 474 (611)
T KOG1739|consen 402 DANWQLFAEEGEMKMYRREVEENGIVLDPLKATHAVKGVTAHEVCHYFWNVDVRNDWETTLE-------NFHVVETISDD 474 (611)
T ss_pred cchhhhhcccCCccccceeeccCCcccCccccchhhcchhHHHHHHHHcChhhhcchhhhhh-------hceeeeeecCC
Confidence 4569999999999999998742 223333444433332 45677788999999999987665 66688999999
Q ss_pred CeEEEEEEeecccccCcceEEEE--EEEee-eC--CCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEeeeeEE
Q 006208 163 EQISLVRVKVPWPLSCREGLVHY--FSFDY-FQ--DGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDLVGGFA 237 (657)
Q Consensus 163 e~IvY~rvklPWPLSnRDaVl~~--~~~d~-le--dGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi~Ggf~ 237 (657)
..++|..-+--||.+.||+++.. ..+.. .+ .+.++|+..++.. ...|....+||+.+.-...
T Consensus 475 ~~~~~qthkrvwpasqrd~lf~shirki~~~~e~gad~wivcn~s~~~-------------a~~pl~n~cvr~~ltv~mi 541 (611)
T KOG1739|consen 475 AIIIYQTHKRVWPASQRDVLFLSHIRKIPALTENGADTWIVCNFSVDH-------------ASAPLNNRCVRAKLTVAMI 541 (611)
T ss_pred eEEEEecccccCCCCcchhHHHHHHhhcccccCCCCceEEEecCcccc-------------ccCccCCceEEEeeeeeee
Confidence 99999999999999999988754 22222 22 3567777677653 4678777899998832222
Q ss_pred E----------EEecCC--eEEEEEEEEEcCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 006208 238 L----------QKVTEE--RSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFKLYQKAVVSV 288 (657)
Q Consensus 238 I----------qPlg~n--kT~Vtyva~vDPKG~~IP~WLINfvaKql~~~tLk~LqKaa~kv 288 (657)
- +|++.+ .|.++|+.+++||| +.|...+-.+.|+--+.+|+.+-..++.-
T Consensus 542 cqt~v~~p~~~q~l~rdd~~ckityvs~vnpgg-wapasalravykreypkflkrft~yv~~~ 603 (611)
T KOG1739|consen 542 CQTLVSPPEGNQELSRDDILCKITYVSNVNPGG-WAPASALRAVYKREYPKFLKRFTSYVQEK 603 (611)
T ss_pred eecccCCcccCCcccccceeEEEEEEeeeCCCC-cccHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 1 233222 69999999999999 89999999999999999998887776543
No 36
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.54 E-value=2.5e-06 Score=76.50 Aligned_cols=133 Identities=8% Similarity=-0.006 Sum_probs=89.2
Q ss_pred EEEEEEEeCCHHHHHHHHhhcccccccccccccCccccccceeeeeeecCCeEEEEEEeecccccCcceEEEEEEEeeeC
Q 006208 113 LLVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQISLVRVKVPWPLSCREGLVHYFSFDYFQ 192 (657)
Q Consensus 113 ~K~EgvIDAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e~IvY~rvklPWPLSnRDaVl~~~~~d~le 192 (657)
+.....|++|++.+.+++.|.+.|++|+|.+. +.+.+.. ....+.+..|| ...+.+..+.. .+..
T Consensus 2 v~~~i~I~ap~e~V~~~~~D~~~~~~w~~~~~-------~~~~~~~-----~~~~~~~~~~~-g~~~~~~~~v~--~~~~ 66 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRDFENLPRFMSHVE-------SVEQLDD-----TRSHWKAKGPA-GLSVEWDAEIT--EQVP 66 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhChhhhHHHhhhhc-------EEEEcCC-----CceEEEEecCC-CCcEEEEEEEe--ccCC
Confidence 45667899999999999999999999999987 5554422 12345557888 55566655442 2222
Q ss_pred CCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEeeeeEEEEEecCCeEEEEEEEEEcCCCCCCCH----HHHHH
Q 006208 193 DGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDLVGGFALQKVTEERSYFRTIANMDIKLDFVPP----SLINF 268 (657)
Q Consensus 193 dGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi~Ggf~IqPlg~nkT~Vtyva~vDPKG~~IP~----WLINf 268 (657)
+..+.. .... |.. ...+.|.|+|+++++|+|++.++.+|.+ .++. ++++.
T Consensus 67 ~~~i~~--~~~~---------------------~~~--~~~~~~~f~~~~~~~T~vt~~~~~~~~~-~~~~~~~~~~~~~ 120 (139)
T cd07817 67 NERIAW--RSVE---------------------GAD--PNAGSVRFRPAPGRGTRVTLTIEYEPPG-GAEGAAVAGLLGG 120 (139)
T ss_pred CCEEEE--EECC---------------------CCC--CcceEEEEEECCCCCeEEEEEEEEECCc-chhhhhHHHHhhh
Confidence 333222 2111 000 1245677999998899999999999998 6776 45566
Q ss_pred HHHHhHHHHHHHHHHHHH
Q 006208 269 ISRQLIGNGFKLYQKAVV 286 (657)
Q Consensus 269 vaKql~~~tLk~LqKaa~ 286 (657)
+.++.....|+.|++.++
T Consensus 121 ~~~~~~~~~l~~lk~~aE 138 (139)
T cd07817 121 EPERQLREDLRRFKQLVE 138 (139)
T ss_pred hHHHHHHHHHHHHHHHhh
Confidence 666666667777766654
No 37
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=98.45 E-value=1e-05 Score=71.91 Aligned_cols=134 Identities=13% Similarity=0.085 Sum_probs=89.1
Q ss_pred EEEEEEEeCCHHHHHHHHhhcccccccccccccCccccccceeeeeeecCCeEEEEEEeecccccCcceEEEEEEEeeeC
Q 006208 113 LLVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQISLVRVKVPWPLSCREGLVHYFSFDYFQ 192 (657)
Q Consensus 113 ~K~EgvIDAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e~IvY~rvklPWPLSnRDaVl~~~~~d~le 192 (657)
++.+..|++|++.+.+++.|.+.|+.|+|.+. ..+.+...........+. ++.. +.+... +...+
T Consensus 3 i~~~~~i~a~~~~V~~~l~d~~~~~~w~~~~~-------~~~~~~~~~~~g~~~~~~--~~~g---~~~~~~---i~~~~ 67 (140)
T cd07821 3 VTVSVTIDAPADKVWALLSDFGGLHKWHPAVA-------SCELEGGGPGVGAVRTVT--LKDG---GTVRER---LLALD 67 (140)
T ss_pred EEEEEEECCCHHHHHHHHhCcCchhhhccCcc-------eEEeecCCCCCCeEEEEE--eCCC---CEEEEE---ehhcC
Confidence 56778899999999999999999999999887 455443211011222222 2211 121111 11122
Q ss_pred C--CeEEEEEecccccccccccCCCCCCCCCCCCCCeEEE-EeeeeEEEEEecCCeEEEEEEEEEcCCCCCCCHHHHHHH
Q 006208 193 D--GLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRV-DLVGGFALQKVTEERSYFRTIANMDIKLDFVPPSLINFI 269 (657)
Q Consensus 193 d--GsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRI-di~Ggf~IqPlg~nkT~Vtyva~vDPKG~~IP~WLINfv 269 (657)
. ..+.. .... | ..| + ...+.|.|.|+++++|.|++.+..+|++ .+|.++++.+
T Consensus 68 ~~~~~i~~--~~~~----------~----~~~-------~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~-~~~~~~~~~~ 123 (140)
T cd07821 68 DAERRYSY--RIVE----------G----PLP-------VKNYVATIRVTPEGDGGTRVTWTAEFDPPE-GLTDELARAF 123 (140)
T ss_pred ccCCEEEE--EecC----------C----CCC-------cccceEEEEEEECCCCccEEEEEEEEecCC-CcchHHHHHH
Confidence 2 22222 2111 0 011 1 1256788999999899999999999999 5999999999
Q ss_pred HHHhHHHHHHHHHHHH
Q 006208 270 SRQLIGNGFKLYQKAV 285 (657)
Q Consensus 270 aKql~~~tLk~LqKaa 285 (657)
++......|++|++++
T Consensus 124 ~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 124 LTGVYRAGLAALKAAL 139 (140)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999999876
No 38
>PRK10724 hypothetical protein; Provisional
Probab=98.45 E-value=6.2e-06 Score=79.59 Aligned_cols=140 Identities=11% Similarity=0.152 Sum_probs=102.0
Q ss_pred cEEEEEEEEEeCCHHHHHHHHhhcccccccccccccCccccccceeeeeeecCCeEEEEEEeecccccCcceEEEEEEEe
Q 006208 110 FHSLLVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQISLVRVKVPWPLSCREGLVHYFSFD 189 (657)
Q Consensus 110 lks~K~EgvIDAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e~IvY~rvklPWPLSnRDaVl~~~~~d 189 (657)
+..++.+..|++|+..+++|+.|++.|++|+|.|. +++++++.. +..+....+.+.= + ...++.+.. +
T Consensus 14 M~~i~~~~~v~~s~~~v~~lv~Dve~yp~flp~~~-------~s~vl~~~~-~~~~a~l~v~~~g-~-~~~f~srv~-~- 81 (158)
T PRK10724 14 MPQISRTALVPYSAEQMYQLVNDVQSYPQFLPGCT-------GSRVLESTP-GQMTAAVDVSKAG-I-SKTFTTRNQ-L- 81 (158)
T ss_pred CCeEEEEEEecCCHHHHHHHHHHHHHHHHhCcccC-------eEEEEEecC-CEEEEEEEEeeCC-c-cEEEEEEEE-e-
Confidence 44677888999999999999999999999999999 899997744 3444444444431 2 222222211 1
Q ss_pred eeCCCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEE-eeeeEEEEEecCCeEEEEEEEEEcCCCCCCCHHHHHH
Q 006208 190 YFQDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVD-LVGGFALQKVTEERSYFRTIANMDIKLDFVPPSLINF 268 (657)
Q Consensus 190 ~ledGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRId-i~Ggf~IqPlg~nkT~Vtyva~vDPKG~~IP~WLINf 268 (657)
..++.+.+ ..+. |- .. ..|.|.|+|++++.|.|++......+. .++..+++.
T Consensus 82 -~~~~~I~~--~~~~---------------------Gp--F~~l~g~W~f~p~~~~~t~V~~~l~fef~s-~l~~~~~~~ 134 (158)
T PRK10724 82 -TSNQSILM--QLVD---------------------GP--FKKLIGGWKFTPLSQEACRIEFHLDFEFTN-KLIELAFGR 134 (158)
T ss_pred -cCCCEEEE--EecC---------------------CC--hhhccceEEEEECCCCCEEEEEEEEEEEch-HHHHHHHHH
Confidence 12233222 2110 10 12 268899999999899999999999999 899999999
Q ss_pred HHHHhHHHHHHHHHHHHHhh
Q 006208 269 ISRQLIGNGFKLYQKAVVSV 288 (657)
Q Consensus 269 vaKql~~~tLk~LqKaa~kv 288 (657)
+.++++..++..+.+.|.++
T Consensus 135 ~~~~~~~~mv~AF~~Ra~~~ 154 (158)
T PRK10724 135 VFKELASNMVQAFTVRAKEV 154 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998876
No 39
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=98.27 E-value=2e-05 Score=71.67 Aligned_cols=131 Identities=12% Similarity=0.134 Sum_probs=82.9
Q ss_pred EEEEeCCHHHHHHHHhhcccccccccccccCccccccceeeeeeecCCeEEEEEEeecccccCcceEEEEEEEeeeCC-C
Q 006208 116 EGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQISLVRVKVPWPLSCREGLVHYFSFDYFQD-G 194 (657)
Q Consensus 116 EgvIDAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e~IvY~rvklPWPLSnRDaVl~~~~~d~led-G 194 (657)
..+|++|+..+++++.|++.|++|.|. . ....+... .....++. |++..+...+........+. +
T Consensus 4 s~~i~ap~~~V~~~l~D~~~~p~~~p~-~-------~~~~~~~~-~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~~ 69 (142)
T cd08861 4 SVTVAAPAEDVYDLLADAERWPEFLPT-V-------HVERLELD-GGVERLRM-----WATAFDGSVHTWTSRRVLDPEG 69 (142)
T ss_pred EEEEcCCHHHHHHHHHhHHhhhccCCC-c-------eEEEEEEc-CCEEEEEE-----EEEcCCCcEEEEEEEEEEcCCC
Confidence 468999999999999999999999997 4 45555542 22222222 77776776665432222222 2
Q ss_pred -eEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEe-eeeEEEEEecCCeEEEEEEEEEcCCCCCCCHHHHHHHHHH
Q 006208 195 -LVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDL-VGGFALQKVTEERSYFRTIANMDIKLDFVPPSLINFISRQ 272 (657)
Q Consensus 195 -svVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi-~Ggf~IqPlg~nkT~Vtyva~vDPKG~~IP~WLINfvaKq 272 (657)
.+...... .| + ++.. .|.|.|+|.++++|.|+|.+..+|++ .+| +.+.+++.
T Consensus 70 ~~i~~~~~~------------------~~---~--~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~-~~~--~~~~~~~~ 123 (142)
T cd08861 70 RRIVFRQEE------------------PP---P--PVASMSGEWRFEPLGGGGTRVTLRHDFTLGI-DSP--EAVPWIRR 123 (142)
T ss_pred CEEEEEEee------------------CC---C--ChhhheeEEEEEECCCCcEEEEEEEEEEECC-CCc--hhHHHHHH
Confidence 23221110 00 0 1222 67899999998899999999999998 566 65655555
Q ss_pred hHH----HHHHHHHHHHH
Q 006208 273 LIG----NGFKLYQKAVV 286 (657)
Q Consensus 273 l~~----~tLk~LqKaa~ 286 (657)
+.. ..|..|++.++
T Consensus 124 ~~~~~~~~~l~~lk~~~E 141 (142)
T cd08861 124 ALDRNSRAELAALRAAAE 141 (142)
T ss_pred HHccccHHHHHHHHHHhh
Confidence 544 45555555543
No 40
>PF11274 DUF3074: Protein of unknown function (DUF3074)
Probab=97.98 E-value=0.0002 Score=71.18 Aligned_cols=103 Identities=17% Similarity=0.102 Sum_probs=71.2
Q ss_pred cceeeeee----------ecCCeEEEEEEeecccccCcceEEEEEEEeee--------CCCeEEEEEecccccccccccC
Q 006208 152 TSNCLKKI----------RVGEQISLVRVKVPWPLSCREGLVHYFSFDYF--------QDGLVVVLINSISDLKSIDKST 213 (657)
Q Consensus 152 ESkvLkki----------s~~e~IvY~rvklPWPLSnRDaVl~~~~~d~l--------edGsvVIl~kSI~D~~~~~~~~ 213 (657)
..++|... ...-.+.....++|||+++|+++......+.. ....++|+...+.
T Consensus 40 ~~~~l~~~~~~~~~~~~~~~~~~v~~~~~kfp~pl~~R~F~~Lvit~~~~~~~~~~~~~~~~f~vVs~P~~--------- 110 (184)
T PF11274_consen 40 SVERLERWDVDDGGGGWGDGTMEVWQLSYKFPGPLSPRVFVVLVITADLPSKTEDDSTGPREFMVVSIPVD--------- 110 (184)
T ss_pred eEEEEEEeccccCCcccccceEEEEEEEeECCCCCCCcEEEEEEEEeccCccccCCCCCCCeEEEEEEEcC---------
Confidence 66677665 22235667788999999999999988666544 2345555543332
Q ss_pred CCCCCCCCCCCCCeEEEEeeeeEEEEEe-------cCCeEEEEEEEEEcCCCCCCCHHHHHH
Q 006208 214 HGFTSDGIPEAKDVVRVDLVGGFALQKV-------TEERSYFRTIANMDIKLDFVPPSLINF 268 (657)
Q Consensus 214 ~G~~~d~IPe~KGvVRIdi~Ggf~IqPl-------g~nkT~Vtyva~vDPKG~~IP~WLINf 268 (657)
+...|+.+|+||....+-=.|+-+ +.+...=+|....|||| +||.|+.+.
T Consensus 111 ----~~~~~~~~~~V~g~Y~SVE~ire~p~~~~~~~~~~veW~MaT~SdaGG-~IP~w~q~~ 167 (184)
T PF11274_consen 111 ----HPDSPPRKGYVRGQYESVERIRELPDTKDDDEEGPVEWIMATRSDAGG-SIPRWMQEM 167 (184)
T ss_pred ----CcccCCCCCCEEEEEEEEEEEEEccCCCCCCCCCcEEEEEEEeeCCCC-cccHHHHhc
Confidence 145777889999776322224434 35567778888999999 999999998
No 41
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=97.82 E-value=0.0009 Score=63.54 Aligned_cols=137 Identities=12% Similarity=0.078 Sum_probs=89.3
Q ss_pred EEEEeCCHHHHHHHHhhcccccccccccccCccccccceeeeeeecCCeEEEEEEeecccccCcceEEEEEEEe-eeCCC
Q 006208 116 EGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQISLVRVKVPWPLSCREGLVHYFSFD-YFQDG 194 (657)
Q Consensus 116 EgvIDAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e~IvY~rvklPWPLSnRDaVl~~~~~d-~ledG 194 (657)
..+|++|+..+++++.|++.|+.|.|.|. .+++|..- .....+-+.++.+-+ . ....+... .++..
T Consensus 6 si~i~a~~~~v~~lvaDv~~~P~~~~~~~-------~~~~l~~~-~~~~~~r~~i~~~~~----g-~~~~w~s~~~~~~~ 72 (146)
T cd08860 6 SIVIDAPLDLVWDMTNDIATWPDLFSEYA-------EAEVLEED-GDTVRFRLTMHPDAN----G-TVWSWVSERTLDPV 72 (146)
T ss_pred EEEEcCCHHHHHHHHHhhhhhhhhccceE-------EEEEEEec-CCeEEEEEEEEeccC----C-EEEEEEEEEEecCC
Confidence 46789999999999999999999999998 78887652 222333233333211 1 12222212 23323
Q ss_pred eEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEeeeeEEEEEecCCeEEEEEEEEEcCC-CCCCCHHHHHHHHHHh
Q 006208 195 LVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDLVGGFALQKVTEERSYFRTIANMDIK-LDFVPPSLINFISRQL 273 (657)
Q Consensus 195 svVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi~Ggf~IqPlg~nkT~Vtyva~vDPK-G~~IP~WLINfvaKql 273 (657)
...|.++..+ ..| +. .+.+.|.|+|++++ |+|++......+ +..++..++-.+.+..
T Consensus 73 ~~~i~~~~~~---------------~~p----~~--~m~~~W~f~~~~~g-T~V~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (146)
T cd08860 73 NRTVRARRVE---------------TGP----FA--YMNIRWEYTEVPEG-TRMRWVQDFEMKPGAPVDDAAMTDRLNTN 130 (146)
T ss_pred CcEEEEEEec---------------CCC----cc--eeeeeEEEEECCCC-EEEEEEEEEEECCCCccchHHHHHHHhcc
Confidence 2323332211 111 11 12577999999776 999999887754 5466787888888888
Q ss_pred HHHHHHHHHHHHHh
Q 006208 274 IGNGFKLYQKAVVS 287 (657)
Q Consensus 274 ~~~tLk~LqKaa~k 287 (657)
....+..|+++++.
T Consensus 131 ~~~~l~~Lk~~aE~ 144 (146)
T cd08860 131 TRAQMARIKKKIEA 144 (146)
T ss_pred cHHHHHHHHHHhhh
Confidence 99999999998875
No 42
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=97.73 E-value=0.0063 Score=54.14 Aligned_cols=133 Identities=13% Similarity=0.167 Sum_probs=76.9
Q ss_pred EEEEEEEEEeCCHHHHHHHHhhcccccccccccccCccccccceeeeeeecCCeEEEEEEeecccccCcceEEEEEEEee
Q 006208 111 HSLLVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQISLVRVKVPWPLSCREGLVHYFSFDY 190 (657)
Q Consensus 111 ks~K~EgvIDAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e~IvY~rvklPWPLSnRDaVl~~~~~d~ 190 (657)
..+..+..|++|++.+.+++.|...+..|+|.+. ..+.+.. .+. .....+.+.-. ..+......++
T Consensus 2 ~~~~~~~~v~a~~e~V~~~l~d~~~~~~w~~~~~-------~~~~~~~--~~~-~~~~~~~~~g~---~~~~~~i~~~~- 67 (139)
T PF10604_consen 2 FKVEVSIEVPAPPEAVWDLLSDPENWPRWWPGVK-------SVELLSG--GGP-GTERTVRVAGR---GTVREEITEYD- 67 (139)
T ss_dssp EEEEEEEEESS-HHHHHHHHTTTTGGGGTSTTEE-------EEEEEEE--CST-EEEEEEEECSC---SEEEEEEEEEE-
T ss_pred EEEEEEEEECCCHHHHHHHHhChhhhhhhhhceE-------EEEEccc--ccc-ceeEEEEeccc---cceeEEEEEec-
Confidence 4567788999999999999999999999999887 5554431 222 22233333321 11222222222
Q ss_pred eCCCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEeeeeEEEEEecCCeEEEEEEEEEcCCCCCCCHHHH----
Q 006208 191 FQDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDLVGGFALQKVTEERSYFRTIANMDIKLDFVPPSLI---- 266 (657)
Q Consensus 191 ledGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi~Ggf~IqPlg~nkT~Vtyva~vDPKG~~IP~WLI---- 266 (657)
.+...+..-. . ..|+. ...+.|.|+|.+++ |.|++.+..+| + +|.|+.
T Consensus 68 ~~~~~~~~~~--~--------------------~~~~~--~~~~~~~~~~~~~g-t~v~~~~~~~~-~--~~~~~~~~~~ 119 (139)
T PF10604_consen 68 PEPRRITWRF--V--------------------PSGFT--NGTGRWRFEPVGDG-TRVTWTVEFEP-G--LPGWLAGPLL 119 (139)
T ss_dssp TTTTEEEEEE--E--------------------SSSSC--EEEEEEEEEEETTT-EEEEEEEEEEE-S--CTTSCHHHHH
T ss_pred CCCcEEEEEE--E--------------------eccee--EEEEEEEEEEcCCC-EEEEEEEEEEE-e--ccchhhHHHH
Confidence 1123222211 0 01111 12566889999977 99999999997 2 445554
Q ss_pred HHHHHHhHHHHHHHHHHHH
Q 006208 267 NFISRQLIGNGFKLYQKAV 285 (657)
Q Consensus 267 NfvaKql~~~tLk~LqKaa 285 (657)
....+......|+.|++.+
T Consensus 120 ~~~~~~~~~~~l~~l~~~~ 138 (139)
T PF10604_consen 120 RPAVKRIVREALENLKRAA 138 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 4444444555556665554
No 43
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.69 E-value=0.0032 Score=53.72 Aligned_cols=135 Identities=13% Similarity=0.004 Sum_probs=79.3
Q ss_pred EEEEEEeCCHHHHHHHHhhcccccccccccccCccccccceeeeeeecCCeEEEEEEeeccc-ccCcceEEEEEEEeeeC
Q 006208 114 LVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQISLVRVKVPWP-LSCREGLVHYFSFDYFQ 192 (657)
Q Consensus 114 K~EgvIDAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e~IvY~rvklPWP-LSnRDaVl~~~~~d~le 192 (657)
+.+..|++|++.+..++.|.+.+..|+|.+. ....+. ...........+.+. ....++......++.
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~~~~~~~~~~~-------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-- 69 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPERWPEWSPGLE-------RVEVLG---GGEGGVGARFVGGRKGGRRLTLTSEVTEVDP-- 69 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChhhhhhhCcccc-------eEEEcC---CCCccceeEEEEEecCCccccceEEEEEecC--
Confidence 4567899999999999999999999999987 444443 223333333333332 222222222222111
Q ss_pred CCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEeeeeEEEEEecCCeEEEEEEEEEcCCCCC--CCHHHHHHHH
Q 006208 193 DGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDLVGGFALQKVTEERSYFRTIANMDIKLDF--VPPSLINFIS 270 (657)
Q Consensus 193 dGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi~Ggf~IqPlg~nkT~Vtyva~vDPKG~~--IP~WLINfva 270 (657)
...+.....+ ...+ +...+.|.|+|.+++.|+|++.+..++++.. ++.+++..+.
T Consensus 70 ~~~~~~~~~~----------------~~~~-------~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~ 126 (141)
T cd07812 70 PRPGRFRVTG----------------GGGG-------VDGTGEWRLEPEGDGGTRVTYTVEYDPPGPLLKVFALLLAGAL 126 (141)
T ss_pred CCceEEEEec----------------CCCC-------cceeEEEEEEECCCCcEEEEEEEEEecCCcchhhhhHHHHHHH
Confidence 1111111110 0011 2336779999998878999999999999833 3566666666
Q ss_pred HHhHHHHHHHHHH
Q 006208 271 RQLIGNGFKLYQK 283 (657)
Q Consensus 271 Kql~~~tLk~LqK 283 (657)
+......+..+++
T Consensus 127 ~~~~~~~~~~~~~ 139 (141)
T cd07812 127 KRELAALLRALKA 139 (141)
T ss_pred HhHHHHHHHHHHh
Confidence 6555555555543
No 44
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.51 E-value=0.0039 Score=57.89 Aligned_cols=131 Identities=15% Similarity=0.174 Sum_probs=76.0
Q ss_pred EEEEEEeCCHHHHHHHHhhcccccccccccccCccccccceeeee---eecCCeEEEEEE-eecccccCcceEEEEEEEe
Q 006208 114 LVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKK---IRVGEQISLVRV-KVPWPLSCREGLVHYFSFD 189 (657)
Q Consensus 114 K~EgvIDAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkk---is~~e~IvY~rv-klPWPLSnRDaVl~~~~~d 189 (657)
-....|++|++.+.+++.|++.|++|+|.+. +.+.+.. ...+..+.|... ..||++ .+......
T Consensus 4 ~~~~~i~ap~e~Vw~~~tD~~~~~~w~~~v~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~v~~ 71 (146)
T cd07824 4 HTVWRIPAPPEAVWDVLVDAESWPDWWPGVE-------RVVELEPGDEAGIGARRRYTWRGLLPYRL-----RFELRVTR 71 (146)
T ss_pred eEEEEecCCHHHHHHHHhChhhcchhhhceE-------EEEEccCCCCCCcceEEEEEEEecCCcEE-----EEEEEEEe
Confidence 3457899999999999999999999999887 5555542 122222222211 124332 22111111
Q ss_pred eeCCCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEeeeeEEEEEecCCeEEEEEEEEEcCCC------CCCCH
Q 006208 190 YFQDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDLVGGFALQKVTEERSYFRTIANMDIKL------DFVPP 263 (657)
Q Consensus 190 ~ledGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi~Ggf~IqPlg~nkT~Vtyva~vDPKG------~~IP~ 263 (657)
......+.+... | | +...+.|.|+|.++ .|.|++....++++ ..++.
T Consensus 72 ~~p~~~~~~~~~-------------g------~-------~~~~~~~~~~~~~~-gt~vt~~~~~~~~~~~~~~l~~l~~ 124 (146)
T cd07824 72 IEPLSLLEVRAS-------------G------D-------LEGVGRWTLAPDGS-GTVVRYDWEVRTTKPWMNLLAPLAR 124 (146)
T ss_pred ecCCcEEEEEEE-------------E------e-------eeEEEEEEEEEcCC-CEEEEEEEEEEcCHHHHHhhhHhhh
Confidence 112233332210 0 0 11145688999765 59999999999865 24556
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q 006208 264 SLINFISRQLIGNGFKLYQK 283 (657)
Q Consensus 264 WLINfvaKql~~~tLk~LqK 283 (657)
.|+..+.+++...+++.|++
T Consensus 125 ~l~~~~~~~~~~~~~~~L~~ 144 (146)
T cd07824 125 PVFRWNHRRVMRAGEKGLAR 144 (146)
T ss_pred hHHHHhHHHHHHhHHHHHHh
Confidence 66666666666666665554
No 45
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.51 E-value=0.0033 Score=58.37 Aligned_cols=139 Identities=12% Similarity=-0.013 Sum_probs=80.7
Q ss_pred EEEEEeCCHHHHHHHHhhcccccccccccccCccccccceeeeeeecCCeEEEEEEeecccccCcceEEEEEEEeee-CC
Q 006208 115 VEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQISLVRVKVPWPLSCREGLVHYFSFDYF-QD 193 (657)
Q Consensus 115 ~EgvIDAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e~IvY~rvklPWPLSnRDaVl~~~~~d~l-ed 193 (657)
.+..|++|++.+..+|.|++.+..|+|-+. .+...+......-+.+++. |++ ..+...+...... ..
T Consensus 3 ~~~~v~a~pe~vw~~l~D~~~~~~~~pg~~----------~~~~~~~~~~~~~~~~~~g-~~~-~~~~~~~~~~~~~~~~ 70 (146)
T cd07823 3 NEFTVPAPPDRVWALLLDIERVAPCLPGAS----------LTEVEGDDEYKGTVKVKLG-PIS-ASFKGTARLLEDDEAA 70 (146)
T ss_pred ceEEecCCHHHHHHHhcCHHHHHhcCCCce----------eccccCCCeEEEEEEEEEc-cEE-EEEEEEEEEEeccCCC
Confidence 356789999999999999999999999886 2222233333333344432 221 1111111111111 22
Q ss_pred CeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEeeeeEEEEEecCCeEEEEEEEEEcCCCCCCCHHH---HHHHH
Q 006208 194 GLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDLVGGFALQKVTEERSYFRTIANMDIKLDFVPPSL---INFIS 270 (657)
Q Consensus 194 GsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi~Ggf~IqPlg~nkT~Vtyva~vDPKG~~IP~WL---INfva 270 (657)
..+.+...... +...|.+ +....|.+.| .++.|+|+|.+.++..| .+|.-. +...+
T Consensus 71 ~~~~~~~~g~~-----------------~~~~g~~--~~~~~~~l~~-~~~gT~v~~~~~~~~~g-~l~~l~~~~v~~~~ 129 (146)
T cd07823 71 RRAVLEATGKD-----------------ARGQGTA--EATVTLRLSP-AGGGTRVTVDTDLALTG-KLAQFGRGGIGDVA 129 (146)
T ss_pred cEEEEEEEEec-----------------CCCcceE--EEEEEEEEEe-cCCcEEEEEEEEEEEee-EhHHhChhHHHHHH
Confidence 33333222100 0111233 2234577888 66789999999999988 565544 77777
Q ss_pred HHhHHHHHHHHHHHHH
Q 006208 271 RQLIGNGFKLYQKAVV 286 (657)
Q Consensus 271 Kql~~~tLk~LqKaa~ 286 (657)
++++..++++|++.++
T Consensus 130 ~~~~~~~~~~l~~~~e 145 (146)
T cd07823 130 GRLLAQFAANLEARLA 145 (146)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7777777777777653
No 46
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=97.37 E-value=0.0093 Score=53.42 Aligned_cols=133 Identities=14% Similarity=0.108 Sum_probs=73.5
Q ss_pred EEEEEEEeCCHHHHHHHHhhcccccccccccccCccccccceeeeee-ecCCeEEEEEEeecccccCcceEEEEEEEeee
Q 006208 113 LLVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKI-RVGEQISLVRVKVPWPLSCREGLVHYFSFDYF 191 (657)
Q Consensus 113 ~K~EgvIDAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkki-s~~e~IvY~rvklPWPLSnRDaVl~~~~~d~l 191 (657)
+.....|+||++.|.+++.|.+.++.|+|.+. ..+++... ..+.. +++..+.+. .+..... ++.
T Consensus 3 ~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~~~~-------~~~~~~~~~~~G~~---~~~~~~~~~---~~~~~i~--~~~ 67 (138)
T cd08862 3 FEATIVIDAPPERVWAVLTDVENWPAWTPSVE-------TVRLEGPPPAVGSS---FKMKPPGLV---RSTFTVT--ELR 67 (138)
T ss_pred EEEEEEEcCCHHHHHHHHHhhhhcccccCcce-------EEEEecCCCCCCcE---EEEecCCCC---ceEEEEE--Eec
Confidence 45677899999999999999999999999887 44444332 22222 233333211 1122211 111
Q ss_pred CCCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEeeeeEEEEEecCCeEEEEEEEEEcCCCCCCCHHHHHHHHH
Q 006208 192 QDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDLVGGFALQKVTEERSYFRTIANMDIKLDFVPPSLINFISR 271 (657)
Q Consensus 192 edGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi~Ggf~IqPlg~nkT~Vtyva~vDPKG~~IP~WLINfvaK 271 (657)
....+... +. .+ + +...+.|.|.|.++++|.+++..........+...++-..++
T Consensus 68 p~~~~~~~--~~-----------------~~---~---~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~ 122 (138)
T cd08862 68 PGHSFTWT--GP-----------------AP---G---ISAVHRHEFEAKPDGGVRVTTSESLSGPLAFLFGLFVGKKLR 122 (138)
T ss_pred CCCEEEEE--ec-----------------CC---C---EEEEEEEEEEEcCCCcEEEEEEEEeecchHHHHHHHHHHHHH
Confidence 22222221 10 11 1 122457889999888999998775543221122334444444
Q ss_pred HhHHHHHHHHHHHH
Q 006208 272 QLIGNGFKLYQKAV 285 (657)
Q Consensus 272 ql~~~tLk~LqKaa 285 (657)
......|.+|++.+
T Consensus 123 ~~~~~~l~~lk~~~ 136 (138)
T cd08862 123 ALLPEWLEGLKAAA 136 (138)
T ss_pred hhHHHHHHHHHHHh
Confidence 55555666666554
No 47
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.37 E-value=0.013 Score=53.93 Aligned_cols=33 Identities=12% Similarity=0.110 Sum_probs=29.8
Q ss_pred EEEEEEEEeCCHHHHHHHHhhcccccccccccc
Q 006208 112 SLLVEGYVEAPLDVCLCVSWESALYTKWWPQYI 144 (657)
Q Consensus 112 s~K~EgvIDAPl~~LLAVL~DvDLyk~WvPq~k 144 (657)
.+.....|++|++.|..++.|.+.|++|+|.+.
T Consensus 3 ~~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~~ 35 (150)
T cd07818 3 RVERSIVINAPPEEVFPYVNDLKNWPEWSPWEK 35 (150)
T ss_pred EEEEEEEEeCCHHHHHHHHhCcccCcccCchhh
Confidence 356678899999999999999999999999886
No 48
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.18 E-value=0.028 Score=50.00 Aligned_cols=132 Identities=14% Similarity=0.114 Sum_probs=71.4
Q ss_pred EEEEEEEeCCHHHHHHHHhhcccccccccccccCccccccceeeeeeecCCeEEEEEEeecccccCcceEEEEEEEeeeC
Q 006208 113 LLVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQISLVRVKVPWPLSCREGLVHYFSFDYFQ 192 (657)
Q Consensus 113 ~K~EgvIDAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e~IvY~rvklPWPLSnRDaVl~~~~~d~le 192 (657)
+..+..|++|++.+.+++.|.+.+..|++.+. ...... ...+..+.+ .+..|. .+.+.+.....+...
T Consensus 2 v~~~~~i~ap~~~Vw~~~~d~~~~~~w~~~~~-------~~~~~~-~~~G~~~~~-~~~~~~---~~~~~~~~~v~~~~p 69 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLTDFPSYPEWNPFVR-------SATGLS-LALGARLRF-VVKLPG---GPPRSFKPRVTEVEP 69 (141)
T ss_pred eEEEEEecCCHHHHHHHHhccccccccChhhe-------eEeccc-cCCCCEEEE-EEeCCC---CCcEEEEEEEEEEcC
Confidence 46678899999999999999999999998775 322221 344555444 333332 122333322222222
Q ss_pred CCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEeeeeEEEEEecCCeEEEEEEEEEcCCCCCCCHHHHHHHHHH
Q 006208 193 DGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDLVGGFALQKVTEERSYFRTIANMDIKLDFVPPSLINFISRQ 272 (657)
Q Consensus 193 dGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi~Ggf~IqPlg~nkT~Vtyva~vDPKG~~IP~WLINfvaKq 272 (657)
...+... ... -| .+. +...+.|.|.|.++++|++++..... | .+.+++-++.+.
T Consensus 70 ~~~~~~~--~~~----------------~~--~~~--~~~~~~~~~~~~~~~~T~~~~~~~~~--g--~~~~~~~~~~~~ 123 (141)
T cd07822 70 PRRLAWR--GGL----------------PF--PGL--LDGEHSFELEPLGDGGTRFVHRETFS--G--LLAPLVLLGLGR 123 (141)
T ss_pred CCEeEEE--ecC----------------CC--CcE--eeEEEEEEEEEcCCCcEEEEEeeEEE--E--EEhHHhhhhhHH
Confidence 2322221 110 00 011 22356788999988899998875432 3 234444444444
Q ss_pred hHHHHHHHHH
Q 006208 273 LIGNGFKLYQ 282 (657)
Q Consensus 273 l~~~tLk~Lq 282 (657)
.....+..+.
T Consensus 124 ~~~~~~~~~~ 133 (141)
T cd07822 124 DLRAGFEAMN 133 (141)
T ss_pred HHhHhHHHHH
Confidence 4444444333
No 49
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.15 E-value=0.016 Score=51.39 Aligned_cols=30 Identities=13% Similarity=0.205 Sum_probs=27.4
Q ss_pred EEEEEeCCHHHHHHHHhhcccccccccccc
Q 006208 115 VEGYVEAPLDVCLCVSWESALYTKWWPQYI 144 (657)
Q Consensus 115 ~EgvIDAPl~~LLAVL~DvDLyk~WvPq~k 144 (657)
....|++|++.+.+++.|.+.+++|+|.+.
T Consensus 3 ~~~~i~ap~~~Vw~~l~d~~~~~~w~~~~~ 32 (140)
T cd08865 3 ESIVIERPVEEVFAYLADFENAPEWDPGVV 32 (140)
T ss_pred eEEEEcCCHHHHHHHHHCccchhhhccCce
Confidence 456789999999999999999999999886
No 50
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=96.52 E-value=0.033 Score=53.99 Aligned_cols=139 Identities=17% Similarity=0.221 Sum_probs=87.4
Q ss_pred EEEEEEEeCCHHHHHHHHhhcccccccccccccCccccccceeeeeeecCCeEEEEEEeecccccCcceEEEEEEEeeeC
Q 006208 113 LLVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQISLVRVKVPWPLSCREGLVHYFSFDYFQ 192 (657)
Q Consensus 113 ~K~EgvIDAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e~IvY~rvklPWPLSnRDaVl~~~~~d~le 192 (657)
+.....+..++..+.+|.+|++-|++++|.|. .++++.+ ++.+.+.-..+.+= .=|+...-.. .+.
T Consensus 4 ~~~s~lv~y~a~~mF~LV~dV~~YP~FlP~C~-------~s~v~~~-~~~~l~A~l~V~~k---~i~e~F~Trv---~~~ 69 (146)
T COG2867 4 IERTALVPYSASQMFDLVNDVESYPEFLPWCS-------ASRVLER-NERELIAELDVGFK---GIRETFTTRV---TLK 69 (146)
T ss_pred eEeeeeccCCHHHHHHHHHHHHhCchhccccc-------cceEecc-CcceeEEEEEEEhh---heeeeeeeee---eec
Confidence 45556788899999999999999999999998 7777755 22232222222210 1111111100 011
Q ss_pred CCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEeeeeEEEEEecCCeEEEEEEEEEcCCCCCCCHHHHHHHHHH
Q 006208 193 DGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDLVGGFALQKVTEERSYFRTIANMDIKLDFVPPSLINFISRQ 272 (657)
Q Consensus 193 dGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi~Ggf~IqPlg~nkT~Vtyva~vDPKG~~IP~WLINfvaKq 272 (657)
.+.-.|.+..+ +| | +-| ..|+|.|+|++++.|+|.+....+.+. -|=..++-.+.+.
T Consensus 70 ~~~~~I~~~l~----------~G------P----Fk~--L~~~W~F~pl~~~~ckV~f~ldfeF~s-~ll~~~~g~~f~~ 126 (146)
T COG2867 70 PTARSIDMKLI----------DG------P----FKY--LKGGWQFTPLSEDACKVEFFLDFEFKS-RLLGALIGPVFKR 126 (146)
T ss_pred Cchhhhhhhhh----------cC------C----hhh--hcCceEEEECCCCceEEEEEEEeeehh-HHHHHHHHHHHHH
Confidence 11111111110 11 1 111 158999999999999999999999998 6667777777777
Q ss_pred hHHHHHHHHHHHHHhh
Q 006208 273 LIGNGFKLYQKAVVSV 288 (657)
Q Consensus 273 l~~~tLk~LqKaa~kv 288 (657)
+...+...+.+.|..+
T Consensus 127 ~a~~mv~aF~kRA~~~ 142 (146)
T COG2867 127 LASKMVEAFEKRAKEV 142 (146)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 7777777777777655
No 51
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=96.07 E-value=0.33 Score=43.37 Aligned_cols=137 Identities=12% Similarity=0.011 Sum_probs=73.0
Q ss_pred EEEEEEEeCCHHHHHHHHhhcccccccccccccCccccccceeeeeeecCCeEEEEEEeecccccCcceEEEEEEEeeeC
Q 006208 113 LLVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQISLVRVKVPWPLSCREGLVHYFSFDYFQ 192 (657)
Q Consensus 113 ~K~EgvIDAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e~IvY~rvklPWPLSnRDaVl~~~~~d~le 192 (657)
+....+|+||+..+.+++.|.+.++.|+|.+. ...... ..+..+.+.. ..+.+. ..-+.........
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~~~~~~w~~~~~-------~~~~~~--~~Gg~~~~~~-~~~~g~---~~~~~~~i~~~~~ 68 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDPELLAQWFGPTT-------TAEMDL--RVGGRWFFFM-TGPDGE---EGWVSGEVLEVEP 68 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCHHHHHhhhCcCC-------ceEEcc--cCCceEEEEE-ECCCCC---EEeccEEEEEEcC
Confidence 45667899999999999999999999998633 111111 1223322222 222211 1111111111112
Q ss_pred CCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEeeeeEEEEEecCCeEEEEEEEEEcCCCCCCCHHHHHHHHHH
Q 006208 193 DGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDLVGGFALQKVTEERSYFRTIANMDIKLDFVPPSLINFISRQ 272 (657)
Q Consensus 193 dGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi~Ggf~IqPlg~nkT~Vtyva~vDPKG~~IP~WLINfvaKq 272 (657)
+..+....... .. |+. ......|.|.|.+ ++|+|++....-+.+ .|....--.++.
T Consensus 69 ~~~i~~~~~~~---------------~~-~~~-----~~~~~~~~~~~~~-~~T~v~~~~~~~~~~--~~~~~~~~~~~~ 124 (139)
T cd07814 69 PRRLVFTWAFS---------------DE-TPG-----PETTVTVTLEETG-GGTRLTLTHSGFPEE--DAEQEAREGMEE 124 (139)
T ss_pred CCeEEEEeccc---------------CC-CCC-----CceEEEEEEEECC-CCEEEEEEEEccChH--hHHHHHHhCHhh
Confidence 23322221110 01 111 1124557899999 579999998766654 334445555555
Q ss_pred hHHHHHHHHHHHHH
Q 006208 273 LIGNGFKLYQKAVV 286 (657)
Q Consensus 273 l~~~tLk~LqKaa~ 286 (657)
....+|..|++.|+
T Consensus 125 ~~~~~l~~lk~~~E 138 (139)
T cd07814 125 GWTGTLDRLKALLE 138 (139)
T ss_pred HHHHHHHHHHHHhh
Confidence 55666677776664
No 52
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=95.43 E-value=0.55 Score=42.71 Aligned_cols=30 Identities=17% Similarity=0.106 Sum_probs=26.9
Q ss_pred EEEEEEEeCCHHHHHHHHhhcccccccccc
Q 006208 113 LLVEGYVEAPLDVCLCVSWESALYTKWWPQ 142 (657)
Q Consensus 113 ~K~EgvIDAPl~~LLAVL~DvDLyk~WvPq 142 (657)
+..+..|+||++.|.+++.|.+.+++|+|.
T Consensus 2 i~~~~~i~ap~e~Vw~~l~d~~~~~~W~~~ 31 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVLADPRRHPEIDGS 31 (144)
T ss_pred eEEEEEEeCCHHHHHHHHhCccccceeCCC
Confidence 456678999999999999999999999974
No 53
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=94.58 E-value=1.4 Score=40.42 Aligned_cols=30 Identities=10% Similarity=0.200 Sum_probs=27.6
Q ss_pred EEEEEeCCHHHHHHHHhhcccccccccccc
Q 006208 115 VEGYVEAPLDVCLCVSWESALYTKWWPQYI 144 (657)
Q Consensus 115 ~EgvIDAPl~~LLAVL~DvDLyk~WvPq~k 144 (657)
....|++|++.+.+++.|.+.+..|+|.+.
T Consensus 3 ~s~~I~ap~e~V~~~~~d~~~~~~~~p~~~ 32 (137)
T cd07820 3 RSTVIPAPIEEVFDFHSRPDNLERLTPPWL 32 (137)
T ss_pred EEEEcCCCHHHHHHHHcCcchHHhcCCCCC
Confidence 356789999999999999999999999987
No 54
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=94.08 E-value=2.7 Score=37.53 Aligned_cols=30 Identities=10% Similarity=0.266 Sum_probs=27.4
Q ss_pred EEEEEEEeCCHHHHHHHHhhcccccccccc
Q 006208 113 LLVEGYVEAPLDVCLCVSWESALYTKWWPQ 142 (657)
Q Consensus 113 ~K~EgvIDAPl~~LLAVL~DvDLyk~WvPq 142 (657)
|..+.+|++|++.|.+++.|.+.++.|++-
T Consensus 2 ~~~~~~i~ap~e~Vw~~~td~~~~~~W~~~ 31 (136)
T cd08893 2 FVYVTYIRATPEKVWQALTDPEFTRQYWGG 31 (136)
T ss_pred eEEEEEecCCHHHHHHHHcCchhhhheecc
Confidence 567789999999999999999999999865
No 55
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=90.66 E-value=2.2 Score=44.07 Aligned_cols=137 Identities=9% Similarity=0.099 Sum_probs=95.3
Q ss_pred EEEeCCHHHHHHHHhhcccccccccccccCccccccceeeeeeecCCeEEEEEEeecccccCcceEEEEEEEeeeCCCeE
Q 006208 117 GYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQISLVRVKVPWPLSCREGLVHYFSFDYFQDGLV 196 (657)
Q Consensus 117 gvIDAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e~IvY~rvklPWPLSnRDaVl~~~~~d~ledGsv 196 (657)
-.|..++..+.+|+.+++.|+.++|+|+ +|.+.++.-.+....-..+-+| |+..| ++-+. .+. +...+
T Consensus 74 rligysp~~my~vVS~V~~Y~~FVPwC~-------kS~V~~~~P~~~~kA~LeVGFk-~l~E~-y~S~V-t~~--~p~l~ 141 (227)
T KOG3177|consen 74 RLIGYSPSEMYSVVSNVSEYHEFVPWCK-------KSDVTSRRPSGPLKADLEVGFK-PLDER-YTSNV-TCV--KPHLT 141 (227)
T ss_pred hhhCCCHHHHHHHHHhHHHhhcccccee-------ccceeecCCCCCceeeEEecCc-ccchh-heeee-EEe--cccce
Confidence 4578899999999999999999999999 8999877545577788888887 45332 11111 111 11111
Q ss_pred EEEEecccccccccccCCCCCCCCCCCCCCeEEE-Ee-eeeEEEEEec--CCeEEEEEEEEEcCCCCCCCHHHHHHHHHH
Q 006208 197 VVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRV-DL-VGGFALQKVT--EERSYFRTIANMDIKLDFVPPSLINFISRQ 272 (657)
Q Consensus 197 VIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRI-di-~Ggf~IqPlg--~nkT~Vtyva~vDPKG~~IP~WLINfvaKq 272 (657)
...+ +.| |+ .. ..-|.|.|-. |+.|.+.+-+...=+- .|=.-+.+++.+.
T Consensus 142 kt~~-----------------------~d~--rLF~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~S-~lhs~va~~Ffd~ 195 (227)
T KOG3177|consen 142 KTVC-----------------------ADG--RLFNHLITIWSFKPGPNIPRTCTLDFSVSFEFKS-LLHSQVATIFFDE 195 (227)
T ss_pred EEee-----------------------ccc--cHHHhhhheeeeccCCCCCCeEEEEEEEEEEehh-HHHHHHHHHHHHH
Confidence 1100 011 21 11 4568888887 7888888877777666 7888899999999
Q ss_pred hHHHHHHHHHHHHHhhcCC
Q 006208 273 LIGNGFKLYQKAVVSVSTY 291 (657)
Q Consensus 273 l~~~tLk~LqKaa~kv~~s 291 (657)
++..+..++.+.|...-+-
T Consensus 196 V~~~~v~AF~~ra~~~~gp 214 (227)
T KOG3177|consen 196 VVKQMVNAFEQRARKLYGP 214 (227)
T ss_pred HHHHHHHHHHHHHHHhhCc
Confidence 9999999998888777543
No 56
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=88.19 E-value=13 Score=35.27 Aligned_cols=31 Identities=16% Similarity=0.385 Sum_probs=30.0
Q ss_pred EEEEEEEEEeCCHHHHHHHHhhccccccccc
Q 006208 111 HSLLVEGYVEAPLDVCLCVSWESALYTKWWP 141 (657)
Q Consensus 111 ks~K~EgvIDAPl~~LLAVL~DvDLyk~WvP 141 (657)
.++.++.+|++|++.|..++.|.+.+..|++
T Consensus 11 ~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~ 41 (157)
T cd08899 11 ATLRFERLLPAPIEDVWAALTDPERLARWFA 41 (157)
T ss_pred eEEEEEEecCCCHHHHHHHHcCHHHHHhhcC
Confidence 7899999999999999999999999999998
No 57
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=86.98 E-value=29 Score=34.09 Aligned_cols=107 Identities=12% Similarity=-0.001 Sum_probs=66.4
Q ss_pred EEEEeCCHHHHHHHHhhcccccccccccccCccccccceeeeeeecCCeEEEEEEeecccccCcceEEEEEEEeeeC-CC
Q 006208 116 EGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQISLVRVKVPWPLSCREGLVHYFSFDYFQ-DG 194 (657)
Q Consensus 116 EgvIDAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e~IvY~rvklPWPLSnRDaVl~~~~~d~le-dG 194 (657)
+-.|++|++.++..|.|++-+..=+|-|. -+...++ +..+-.+++++ ||+ +.+--.....+..+ ..
T Consensus 6 ~f~V~~p~e~Vw~~L~dpe~~a~ciPG~q----------s~e~~g~-e~~~~v~l~ig-~l~-~~~~g~~~~~~v~~~~~ 72 (146)
T COG3427 6 TFRVAAPPEAVWEFLNDPEQVAACIPGVQ----------SVETNGD-EYTAKVKLKIG-PLK-GTFSGRVRFVNVDEPPR 72 (146)
T ss_pred eEEecCCHHHHHHHhcCHHHHHhhcCCcc----------eeeecCC-eEEEEEEEeec-cee-EEEEEEEEEccccCCCc
Confidence 45679999999999999999999999886 3444454 66666666666 465 33322222222122 33
Q ss_pred eEEEEEecccccccccccCCCCCCCCCCCCCCeEEE-EeeeeEEEEEecCCeEEEEEEEEEcCCC
Q 006208 195 LVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRV-DLVGGFALQKVTEERSYFRTIANMDIKL 258 (657)
Q Consensus 195 svVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRI-di~Ggf~IqPlg~nkT~Vtyva~vDPKG 258 (657)
.+.|-... .|.-.+ +....+.+.|-+.+ |++.|.+..|-+|
T Consensus 73 ~~~i~g~G----------------------~~~~g~~~~~~~v~l~~~g~g-t~v~w~~~~~~gg 114 (146)
T COG3427 73 SITINGSG----------------------GGAAGFADGTVDVQLEPSGEG-TRVNWFADANVGG 114 (146)
T ss_pred EEEEEeec----------------------ccccceeeeeeEEEEEEcCCC-cEEEEEEEccccH
Confidence 33332111 001111 11334568888888 9999999999998
No 58
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=84.85 E-value=33 Score=31.85 Aligned_cols=29 Identities=21% Similarity=0.434 Sum_probs=26.9
Q ss_pred EEEEEEEeCCHHHHHHHHhhccccccccc
Q 006208 113 LLVEGYVEAPLDVCLCVSWESALYTKWWP 141 (657)
Q Consensus 113 ~K~EgvIDAPl~~LLAVL~DvDLyk~WvP 141 (657)
+.++-.|+||++.|..++.|.+.+.+|++
T Consensus 2 l~i~r~i~a~~e~Vw~a~t~pe~~~~W~~ 30 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWTEPELLKQWFC 30 (146)
T ss_pred eEEEEEeCCCHHHHHHHcCCHHHHhccCC
Confidence 56788999999999999999999999975
No 59
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=82.75 E-value=44 Score=31.67 Aligned_cols=119 Identities=11% Similarity=-0.052 Sum_probs=65.8
Q ss_pred EEEEEEEEeCCHHHHHHHHhhcc--cccccccccccCccccccceeeeeeecCCeEEEEEEeecccccCcceEEEEEEEe
Q 006208 112 SLLVEGYVEAPLDVCLCVSWESA--LYTKWWPQYIFPQFKIITSNCLKKIRVGEQISLVRVKVPWPLSCREGLVHYFSFD 189 (657)
Q Consensus 112 s~K~EgvIDAPl~~LLAVL~DvD--Lyk~WvPq~k~ptf~i~ESkvLkkis~~e~IvY~rvklPWPLSnRDaVl~~~~~d 189 (657)
++..+..|++|++.+.+++.+.+ +.+.|.|++. ..+++.--+.-.-+-.+.+.-. ...+. +- -.+.
T Consensus 2 ~~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~-------~~~~~eG~~~~GsvR~~~~~~~--~~~~~-~k--E~l~ 69 (148)
T cd07816 2 TLEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIK-------SVELLEGDGGPGSIKLITFGPG--GKVKY-VK--ERID 69 (148)
T ss_pred cEEEEEEecCCHHHHHHHHhcChhhcccccccccc-------EEEEEecCCCCceEEEEEEcCC--CcceE-EE--EEEE
Confidence 36778899999999999999998 3567888776 4455432111122333332211 10111 11 1122
Q ss_pred eeCCCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEe-eeeEEEEEecCCeEEEEEEEEEcCCCCC
Q 006208 190 YFQDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDL-VGGFALQKVTEERSYFRTIANMDIKLDF 260 (657)
Q Consensus 190 ~ledGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi-~Ggf~IqPlg~nkT~Vtyva~vDPKG~~ 260 (657)
..++....+.+.-+.. .+|. ..+.. .+.+.|.|.++++|.+.+.+..+|....
T Consensus 70 ~~D~~~~~~~y~vveg--------------~~~~----~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~~~ 123 (148)
T cd07816 70 AVDEENKTYKYTVIEG--------------DVLK----DGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKGDA 123 (148)
T ss_pred EEcccccEEEEEEEec--------------cccc----CceEEEEEEEEEEECCCCCEEEEEEEEEEECCCC
Confidence 2333223333332211 1211 01333 5678899999999999999988877654
No 60
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=80.88 E-value=27 Score=35.81 Aligned_cols=106 Identities=9% Similarity=0.093 Sum_probs=64.5
Q ss_pred EEEEEEEEEeCCHHHHHHHHhhcccccccccccccCccccccceeeeeeecCCeEEEEEEeecccccCcceEEEE-EEEe
Q 006208 111 HSLLVEGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQISLVRVKVPWPLSCREGLVHY-FSFD 189 (657)
Q Consensus 111 ks~K~EgvIDAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e~IvY~rvklPWPLSnRDaVl~~-~~~d 189 (657)
..+....+|++|++.++++-+|.+..+.||.... ..+++ .+ .-..+..+.| +. ++. |..+
T Consensus 70 i~v~~~V~I~kPae~vy~~W~dLe~lP~~Mkhl~-------SVkVl---dd--krSrW~~~ap-~g------~~v~Wea~ 130 (217)
T COG5637 70 IEVEVQVTIDKPAEQVYAYWRDLENLPLWMKHLD-------SVKVL---DD--KRSRWKANAP-LG------LEVEWEAE 130 (217)
T ss_pred eEEEEEEEeCChHHHHHHHHHhhhhhhHHHHhhc-------eeecc---CC--CccceeEcCC-CC------ceEEEeeh
Confidence 3466667899999999999999999999997775 33444 21 2266777777 32 122 2222
Q ss_pred eeC--CCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEeeeeEEEEEecCCeEEEEEEEEEcCCC
Q 006208 190 YFQ--DGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDLVGGFALQKVTEERSYFRTIANMDIKL 258 (657)
Q Consensus 190 ~le--dGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi~Ggf~IqPlg~nkT~Vtyva~vDPKG 258 (657)
... .+. +|--.|++. ..+| ..|.|| |++....+|.|.....-.|-|
T Consensus 131 it~d~~~e-~I~W~Sl~G-------------a~v~-NsG~Vr--------F~~~pg~~t~V~v~lsY~~Pg 178 (217)
T COG5637 131 ITKDIPGE-RIQWESLPG-------------ARVE-NSGAVR--------FYDAPGDSTEVKVTLSYRPPG 178 (217)
T ss_pred hhccCCCc-EEeeecCCC-------------CcCC-CCccEE--------eeeCCCCceEEEEEEEecCCc
Confidence 122 232 333344431 1233 456666 778877888888776554444
No 61
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=78.10 E-value=60 Score=30.35 Aligned_cols=133 Identities=14% Similarity=0.070 Sum_probs=69.0
Q ss_pred EEEEeCCHHHHHHHHhhcccccccccccccCccccccceeeeeeecCCeEEEEEEeecccccCcceEEEEEEEeeeCCCe
Q 006208 116 EGYVEAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQISLVRVKVPWPLSCREGLVHYFSFDYFQDGL 195 (657)
Q Consensus 116 EgvIDAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e~IvY~rvklPWPLSnRDaVl~~~~~d~ledGs 195 (657)
+-.|++|++.+.++|.|++....=+|-|. .++..+ ++.-.-+++++- |++-+= -......+..+...
T Consensus 2 s~~v~a~~~~vw~~l~D~~~l~~ciPG~~----------~~e~~~-~~~~~~~~v~vG-~i~~~~-~g~~~~~~~~~~~~ 68 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLSDPENLARCIPGVE----------SIEKVG-DEYKGKVKVKVG-PIKGTF-DGEVRITEIDPPES 68 (140)
T ss_dssp EEEECS-HHHHHHHHT-HHHHHHHSTTEE----------EEEEEC-TEEEEEEEEESC-CCEEEE-EEEEEEEEEETTTE
T ss_pred cEEecCCHHHHHHHhcCHHHHHhhCCCcE----------EeeecC-cEEEEEEEEEec-cEEEEE-EEEEEEEEcCCCcc
Confidence 45689999999999999998888888886 455555 555445555543 342211 11111111122333
Q ss_pred EEEEEecccccccccccCCCCCCCCCCCCCCeEEEEeeeeEEEEEecCCeEEEEEEEEEcCCCCCC---CHHHHHHHHHH
Q 006208 196 VVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDLVGGFALQKVTEERSYFRTIANMDIKLDFV---PPSLINFISRQ 272 (657)
Q Consensus 196 vVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi~Ggf~IqPlg~nkT~Vtyva~vDPKG~~I---P~WLINfvaKq 272 (657)
+.+....-. ..+.+.+.. ...+..-+.+.|.|.|.+.++..| .| ..-++.-++++
T Consensus 69 ~~~~~~g~g-------------------~~~~~~~~~--~~~~~~~~~~~T~v~~~~~~~~~G-~la~~g~~~i~~~~~~ 126 (140)
T PF06240_consen 69 YTLEFEGRG-------------------RGGGSSASA--NITLSLEDDGGTRVTWSADVEVGG-PLASLGQRLIESVARR 126 (140)
T ss_dssp EEEEEEEEE-------------------CTCCEEEEE--EEEEEECCCTCEEEEEEEEEEEEC-HHHHC-HHHHHHHHHH
T ss_pred eEeeeeccC-------------------CccceEEEE--EEEEEcCCCCCcEEEEEEEEEEcc-CHHHhhHHHHHHHHHH
Confidence 323332210 012233322 233444444559999999999988 32 22344444444
Q ss_pred hHHHHHHHHHH
Q 006208 273 LIGNGFKLYQK 283 (657)
Q Consensus 273 l~~~tLk~LqK 283 (657)
++-.++++|++
T Consensus 127 l~~~f~~~l~~ 137 (140)
T PF06240_consen 127 LIEQFFENLER 137 (140)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 62
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=76.16 E-value=64 Score=29.67 Aligned_cols=29 Identities=17% Similarity=0.557 Sum_probs=26.7
Q ss_pred EEEEEEEeCCHHHHHHHHhhccccccccc
Q 006208 113 LLVEGYVEAPLDVCLCVSWESALYTKWWP 141 (657)
Q Consensus 113 ~K~EgvIDAPl~~LLAVL~DvDLyk~WvP 141 (657)
+.++-.|+||++.|..++.|.++..+|+.
T Consensus 2 l~~~r~i~ap~e~Vw~a~t~p~~l~~W~~ 30 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWTDPEHLAQWWG 30 (139)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhccC
Confidence 56788999999999999999999999984
No 63
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=75.89 E-value=66 Score=29.67 Aligned_cols=29 Identities=17% Similarity=0.321 Sum_probs=26.9
Q ss_pred EEEEEEEeCCHHHHHHHHhhccccccccc
Q 006208 113 LLVEGYVEAPLDVCLCVSWESALYTKWWP 141 (657)
Q Consensus 113 ~K~EgvIDAPl~~LLAVL~DvDLyk~WvP 141 (657)
+.++-.+++|+..|..++.|.+++.+|+.
T Consensus 2 ~~i~r~~~ap~e~Vw~a~tdp~~l~~W~~ 30 (143)
T cd08900 2 FTLERTYPAPPERVFAAWSDPAARARWFV 30 (143)
T ss_pred EEEEEEeCCCHHHHHHHhcCHHHHHhcCC
Confidence 67788999999999999999999999984
No 64
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=64.37 E-value=99 Score=27.05 Aligned_cols=123 Identities=10% Similarity=0.017 Sum_probs=63.1
Q ss_pred eCCHHHHHHHHhhcccccccccccccCccccccceeeeeeecCCeEEEEEEeecccccCcceEEEEEEEeeeCCCeEEEE
Q 006208 120 EAPLDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLKKIRVGEQISLVRVKVPWPLSCREGLVHYFSFDYFQDGLVVVL 199 (657)
Q Consensus 120 DAPl~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLkkis~~e~IvY~rvklPWPLSnRDaVl~~~~~d~ledGsvVIl 199 (657)
+||++.|..++.+.+.+..|++ +. ..-.....+..+.+ .. | ....+...+..........+...
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W~~-~~---------~~~~~~~~Gg~~~~--~~-~---~g~~~~~~~~v~~~~p~~~i~~~ 64 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQWFT-TS---------EAEMDFRPGGSFRF--MD-P---DGGEFGFDGTVLEVEPPERIVFT 64 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHHSE-EE---------EEEEECSTTEEEEE--EE-T---TSEEEEEEEEEEEEETTTEEEEE
T ss_pred CcCHHHHHHHHCCHhHHhhccC-CC---------cceeeeecCCEEEE--Ee-c---CCCCceeeEEEEEEeCCEEEEEE
Confidence 6899999999999999999932 11 11122345665555 22 2 12233333322222334443333
Q ss_pred EecccccccccccCCCCCCCCCCCCCCeEEEEeeeeEEEEEecCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHhHHHHHH
Q 006208 200 INSISDLKSIDKSTHGFTSDGIPEAKDVVRVDLVGGFALQKVTEERSYFRTIANMDIKLDFVPPSLINFISRQLIGNGFK 279 (657)
Q Consensus 200 ~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi~Ggf~IqPlg~nkT~Vtyva~vDPKG~~IP~WLINfvaKql~~~tLk 279 (657)
.. ..+ .|. + ....-.|.|.+ .+++|.+++....-| +.-......+..-..+|.
T Consensus 65 ~~-~~~---------------~~~--~---~~~~v~~~~~~-~~~~T~l~~~~~~~~-----~~~~~~~~~~~gw~~~l~ 117 (124)
T PF08327_consen 65 WR-MPD---------------DPD--G---PESRVTFEFEE-EGGGTRLTLTHSGFP-----DDDEEEEGMEQGWEQMLD 117 (124)
T ss_dssp EE-EET---------------SSS--C---EEEEEEEEEEE-ETTEEEEEEEEEEEH-----SHHHHHHCHHHHHHHHHH
T ss_pred EE-ccC---------------CCC--C---CceEEEEEEEE-cCCcEEEEEEEEcCC-----ccHHHHHHHHHHHHHHHH
Confidence 22 111 110 0 01134577999 788899988862222 122222215555556666
Q ss_pred HHHHHH
Q 006208 280 LYQKAV 285 (657)
Q Consensus 280 ~LqKaa 285 (657)
+|+..+
T Consensus 118 ~L~~~l 123 (124)
T PF08327_consen 118 RLKAYL 123 (124)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666654
No 65
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=56.04 E-value=1.7e+02 Score=27.13 Aligned_cols=30 Identities=17% Similarity=0.563 Sum_probs=27.3
Q ss_pred EEEEEEEeCCHHHHHHHHhhcccccccccc
Q 006208 113 LLVEGYVEAPLDVCLCVSWESALYTKWWPQ 142 (657)
Q Consensus 113 ~K~EgvIDAPl~~LLAVL~DvDLyk~WvPq 142 (657)
+.++-.+++|++.|...+.|.+++..|+.-
T Consensus 2 l~i~r~~~ap~e~Vw~a~Tdpe~l~~W~~p 31 (142)
T cd07826 2 IVITREFDAPRELVFRAHTDPELVKRWWGP 31 (142)
T ss_pred EEEEEEECCCHHHHHHHhCCHHHHhhccCC
Confidence 677889999999999999999999999853
No 66
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=54.35 E-value=2e+02 Score=27.42 Aligned_cols=31 Identities=19% Similarity=0.461 Sum_probs=29.4
Q ss_pred EEEEEEEEEeCCHHHHHHHHhhccccccccc
Q 006208 111 HSLLVEGYVEAPLDVCLCVSWESALYTKWWP 141 (657)
Q Consensus 111 ks~K~EgvIDAPl~~LLAVL~DvDLyk~WvP 141 (657)
-+|+++.+|++|+..|...+.|.++..+|+.
T Consensus 8 ~~~~~er~i~aP~e~Vf~A~Tdpe~l~~W~~ 38 (149)
T COG3832 8 RTLEIERLIDAPPEKVFEALTDPELLARWFM 38 (149)
T ss_pred ceEEEEEeecCCHHHHHHHhcCHHHHHhhcC
Confidence 4689999999999999999999999999997
No 67
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=51.74 E-value=15 Score=33.27 Aligned_cols=31 Identities=10% Similarity=0.202 Sum_probs=27.9
Q ss_pred EEEEEEEeCCHHHHHHHHhhccccccccccc
Q 006208 113 LLVEGYVEAPLDVCLCVSWESALYTKWWPQY 143 (657)
Q Consensus 113 ~K~EgvIDAPl~~LLAVL~DvDLyk~WvPq~ 143 (657)
+..+..|+||++.|..++.|.+.+.+|++-.
T Consensus 3 i~~~i~i~a~~e~Vw~~~td~~~~~~W~~~~ 33 (145)
T cd08898 3 IERTILIDAPRERVWRALTDPEHFGQWFGVK 33 (145)
T ss_pred eEEEEEecCCHHHHHHHhcChhhhhhccccc
Confidence 5677889999999999999999999998753
No 68
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=50.15 E-value=5.2 Score=46.71 Aligned_cols=70 Identities=20% Similarity=0.136 Sum_probs=51.9
Q ss_pred cccCcceEEEEEEEeeeCCCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEe-eeeEEEEEecCCeEEEEEEEE
Q 006208 175 PLSCREGLVHYFSFDYFQDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDL-VGGFALQKVTEERSYFRTIAN 253 (657)
Q Consensus 175 PLSnRDaVl~~~~~d~ledGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi-~Ggf~IqPlg~nkT~Vtyva~ 253 (657)
|...||+++.. |.|+++-.++.. ...+.-.| ||+-+ ...|.|.|.+.+++++.++..
T Consensus 575 ph~~~~~~ViR--------gacv~a~~svk~-------------~~a~~l~~-vrA~~~~~r~liep~g~g~sr~~~i~r 632 (674)
T KOG2200|consen 575 PHPSRDFGVIR--------GACVLAPLSVKV-------------SMAIQLGG-VRATVLDSRFLIEPCGGGQSRVTHICR 632 (674)
T ss_pred CCCCCCceeee--------eeeeecccccch-------------hhhhhhcc-chhhhhhhhhhccccCCcchhhhhhhh
Confidence 45678877654 556666555432 11222345 89887 788999999999999999999
Q ss_pred EcCCCCCCCHHHHH
Q 006208 254 MDIKLDFVPPSLIN 267 (657)
Q Consensus 254 vDPKG~~IP~WLIN 267 (657)
+|.+| ..|.|.-.
T Consensus 633 ~dlkg-~~~~wy~k 645 (674)
T KOG2200|consen 633 VDLKG-RSPEWYNK 645 (674)
T ss_pred hhccc-CCchhhhc
Confidence 99999 89999743
No 69
>TIGR01599 PYST-A Plasmodium yoelii subtelomeric family PYST-A. A single high-scoring gene was identified in the complete genome of P. falciparum as well as a single gene from P. chaboudi from GenBank which were included in the seed. There are no obvious homologs to these genes in any non-Plasmodium organism. These observations suggest an expansion of this family in yoelii from a common Plasmodium ancestor gene (present in a single copy in falciparum).
Probab=45.42 E-value=3.7e+02 Score=27.93 Aligned_cols=94 Identities=13% Similarity=0.169 Sum_probs=62.2
Q ss_pred cccCCCCCEEEec-CCCeEEEEEeCCCCCCcEEEEEEEEEeCC--HHHHHHHHhhcccccccccccccCccccccceeee
Q 006208 81 SEASHGEWKLKQD-TEEFRVMYREGPHGTPFHSLLVEGYVEAP--LDVCLCVSWESALYTKWWPQYIFPQFKIITSNCLK 157 (657)
Q Consensus 81 ~e~s~egWkL~kD-kdGIkVyYR~~peGS~lks~K~EgvIDAP--l~~LLAVL~DvDLyk~WvPq~k~ptf~i~ESkvLk 157 (657)
.+++.++..+... .++..+||+.. +++ ---|++-.|..| ...++-.|||++.-+.....+. .++++.
T Consensus 31 hAt~~ddY~ly~~~~~~~~~y~KK~-~nt--dI~K~~~~I~~pnkYneIIN~LWdpn~~~~fn~~~i-------kgki~R 100 (208)
T TIGR01599 31 HAINKNDYNLYSTPNPDSTVYYKKD-HNT--IIGKIHLTIQDPNKYDAIIKTLWDFNDNKKFGRKFI-------KGKVVR 100 (208)
T ss_pred hCcCCCCccccccCCCCceEEEeec-CCc--EEEEEEEEecCchhHHHHHHHHhccccccCCCchhe-------eeeEEE
Confidence 4455678887755 45678888875 343 446888888776 6889999999998777766554 666666
Q ss_pred eeecCCeEEEEEEeecccccCcceEEEEE
Q 006208 158 KIRVGEQISLVRVKVPWPLSCREGLVHYF 186 (657)
Q Consensus 158 kis~~e~IvY~rvklPWPLSnRDaVl~~~ 186 (657)
.-.++=.++..+.+-+ +. .+.-.+++.
T Consensus 101 vYnpNLvmiqqry~~~-~~-~~~~YfyaL 127 (208)
T TIGR01599 101 VYSPNLIMIQQRYKDA-SG-SPNKYFYAL 127 (208)
T ss_pred EeCCCeEEEEeecCCC-CC-CcceEEeEe
Confidence 6666555666666642 22 344455553
No 70
>PF04707 PRELI: PRELI-like family; InterPro: IPR006797 These proteins contain a conserved region found in the yeast YLR168C gene MSF1 product. The function of this protein is unknown, though it is thought to be involved in intra-mitochondrial protein sorting. GFP-tagged MSF1 localizes to mitochondria and is required for wild-type respiratory growth []. This region is also found in a number of other eukaryotic proteins. The PRELI/MSF1 domain is an eukaryotic protein module which occurs in stand-alone form in several proteins, including the human PRELI protein and the yeast MSF1 protein, and as an amino-terminal domain in an orthologous group of proteins typified by human SEC14L1, which is conserved in all animals. In this group of proteins, the PRELI/MSF1 domain co-occurs with the CRAL-TRIO (see PDOC50191 from PROSITEDOC) and the GOLD domains (see PDOC50866 from PROSITEDOC). The PRELI/MSF1 domain is approximately 170 residues long and is predicted to assume a globular alpha + beta fold with six beta strands and four alpha helices. It has been suggested that the PRELI/MSF1 domain may have a function associated with cellular membrane [].
Probab=43.92 E-value=3e+02 Score=26.81 Aligned_cols=76 Identities=11% Similarity=0.103 Sum_probs=45.5
Q ss_pred CeEEEEEEeecc------cccCcceEEEEEEEeeeCCCeEEEEEecccccccccccCCCCCCCCCCCCCCeEEEEeeeeE
Q 006208 163 EQISLVRVKVPW------PLSCREGLVHYFSFDYFQDGLVVVLINSISDLKSIDKSTHGFTSDGIPEAKDVVRVDLVGGF 236 (657)
Q Consensus 163 e~IvY~rvklPW------PLSnRDaVl~~~~~d~ledGsvVIl~kSI~D~~~~~~~~~G~~~d~IPe~KGvVRIdi~Ggf 236 (657)
..++.....+|+ ++...-+++....+| +.++.+.+..+.+.. .+++.+.-.-.|
T Consensus 38 ~Rl~~~~~~~P~w~~kl~g~~~~~~~~E~S~vD-~~~k~l~~~t~Nls~-------------------~~~~~v~E~~~Y 97 (157)
T PF04707_consen 38 KRLITKKNNLPRWLKKLIGVDSECYIIEESIVD-PKNKTLTTKTRNLSF-------------------SSFLSVEETCVY 97 (157)
T ss_pred eeeeeeecCchHHHHHHhCcCceEEEEEEEEEE-CCCCEEEEEEEEccc-------------------CceeEEEEEEEE
Confidence 456677777874 222223333334443 556666665444321 245666655556
Q ss_pred EEEEecCCeEEEEEEEEEcCCC
Q 006208 237 ALQKVTEERSYFRTIANMDIKL 258 (657)
Q Consensus 237 ~IqPlg~nkT~Vtyva~vDPKG 258 (657)
.--|-.|++|.++..+.++.+|
T Consensus 98 ~~~p~np~~T~~~q~a~i~~~~ 119 (157)
T PF04707_consen 98 KPHPDNPNWTLFKQEATISIKG 119 (157)
T ss_pred EECCCCCCcceEEEEEEEEEeC
Confidence 6666677899999999999866
No 71
>PF08417 PaO: Pheophorbide a oxygenase; InterPro: IPR013626 This domain is found in bacterial and plant proteins to the C terminus of a Rieske 2Fe-2S domain (IPR005806 from INTERPRO). One of the proteins the domain is found in is Pheophorbide a oxygenase (PaO) which seems to be a key regulator of chlorophyll catabolism. Arabidopsis PaO (AtPaO) is a Rieske-type 2Fe-2S enzyme that is identical to Arabidopsis accelerated cell death 1 and homologous to lethal leaf spot 1 (LLS1) of maize [], in which the domain described here is also found. ; GO: 0010277 chlorophyllide a oxygenase [overall] activity, 0055114 oxidation-reduction process
Probab=40.64 E-value=61 Score=28.69 Aligned_cols=47 Identities=13% Similarity=0.137 Sum_probs=32.7
Q ss_pred eEEEEEecCCeEEEEEEEEEcCC---CCCCCHHHHHHHHHHhHHHHHHHH
Q 006208 235 GFALQKVTEERSYFRTIANMDIK---LDFVPPSLINFISRQLIGNGFKLY 281 (657)
Q Consensus 235 gf~IqPlg~nkT~Vtyva~vDPK---G~~IP~WLINfvaKql~~~tLk~L 281 (657)
.++..|+++|+|++.+.+..|-. ...+|.|+.....-++...=+..|
T Consensus 26 ~~~~vP~~pG~~Rli~r~~~~f~~~~~k~~P~wl~H~~~n~VLd~Dl~lL 75 (92)
T PF08417_consen 26 VFYCVPTGPGRCRLIWRFPRNFPAWIFKLIPRWLSHLTSNKVLDQDLYLL 75 (92)
T ss_pred EEEEEECCCCeEEEEEEehhhhhhHHhhcCCHHHHHHhhCcccHHHHHHH
Confidence 46689999999999988877761 236888888776555544433333
No 72
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=39.61 E-value=3.1e+02 Score=25.35 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=27.0
Q ss_pred EEEEEEEeCCHHHHHHHHhhccccccccc
Q 006208 113 LLVEGYVEAPLDVCLCVSWESALYTKWWP 141 (657)
Q Consensus 113 ~K~EgvIDAPl~~LLAVL~DvDLyk~WvP 141 (657)
+.++..|+||++.|..++.|.+...+|++
T Consensus 2 ~~~~r~i~ap~e~Vw~a~td~~~~~~W~~ 30 (146)
T cd08895 2 DRLHRVIAAPPERVYRAFLDPDALAKWLP 30 (146)
T ss_pred EEEEEEECCCHHHHHHHHcCHHHHhhcCC
Confidence 67788999999999999999999999985
No 73
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=37.03 E-value=3.3e+02 Score=24.81 Aligned_cols=29 Identities=28% Similarity=0.291 Sum_probs=26.3
Q ss_pred EEEEEEEeCCHHHHHHHHhhccccccccc
Q 006208 113 LLVEGYVEAPLDVCLCVSWESALYTKWWP 141 (657)
Q Consensus 113 ~K~EgvIDAPl~~LLAVL~DvDLyk~WvP 141 (657)
+.++-.|+||++.|..++.|.+++..|+.
T Consensus 2 ~~~~~~~~ap~e~Vw~a~td~e~~~~W~~ 30 (133)
T cd08897 2 ITVETTVDAPIEKVWEAWTTPEHITKWNF 30 (133)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhCCC
Confidence 56778899999999999999999999964
No 74
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=30.32 E-value=4.5e+02 Score=24.39 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=23.5
Q ss_pred EEEEEEEeCCHHHHHHHHhhccccccccc
Q 006208 113 LLVEGYVEAPLDVCLCVSWESALYTKWWP 141 (657)
Q Consensus 113 ~K~EgvIDAPl~~LLAVL~DvDLyk~WvP 141 (657)
++.+.+|+||++.|...+.| ....|++
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t~--~l~~W~~ 28 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFTE--GFGAWWP 28 (149)
T ss_pred eEEEEEecCCHHHHHHHHHh--chhhccC
Confidence 57788999999999999988 5889975
No 75
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=26.93 E-value=53 Score=30.22 Aligned_cols=30 Identities=13% Similarity=0.232 Sum_probs=26.2
Q ss_pred EEEEEEEeCCHHHHHHHHhhcccccccccc
Q 006208 113 LLVEGYVEAPLDVCLCVSWESALYTKWWPQ 142 (657)
Q Consensus 113 ~K~EgvIDAPl~~LLAVL~DvDLyk~WvPq 142 (657)
++....|+||++.|...+.|.+...+|++.
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W~~~ 31 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEITTKFWFT 31 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHHhcccccc
Confidence 356678999999999999999999999754
No 76
>PF00848 Ring_hydroxyl_A: Ring hydroxylating alpha subunit (catalytic domain); InterPro: IPR015879 Aromatic ring hydroxylating dioxygenases are multicomponent 1,2-dioxygenase complexes that convert closed-ring structures to non-aromatic cis-diols []. The complex has both hydroxylase and electron transfer components. The hydroxylase component is itself composed of two subunits: an alpha-subunit of about 50 kDa, and a beta-subunit of about 20 kDa. The electron transfer component is either composed of two subunits: a ferredoxin and a ferredoxin reductase or by a single bifunctional ferredoxin/reductase subunit. Sequence analysis of hydroxylase subunits of ring hydroxylating systems (including toluene, benzene and napthalene 1,2-dioxygenases) suggests they are derived from a common ancestor []. The alpha-subunit binds both a Rieske-like 2Fe-2S cluster and an iron atom: conserved Cys and His residues in the N-terminal region may provide 2Fe-2S ligands, while conserved His and Tyr residues may coordinate the iron. The beta subunit may be responsible for the substrate specificity of the dioxygenase system [].; GO: 0005506 iron ion binding, 0016708 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of two atoms of oxygen into one donor, 0051537 2 iron, 2 sulfur cluster binding, 0019439 aromatic compound catabolic process, 0055114 oxidation-reduction process; PDB: 1WQL_A 3EN1_A 3EQQ_A 2CKF_A 2BMR_A 2BMQ_A 2BMO_A 2GBW_E 2GBX_C 2XRX_A ....
Probab=22.93 E-value=6.3e+02 Score=23.61 Aligned_cols=38 Identities=11% Similarity=-0.005 Sum_probs=28.6
Q ss_pred eEEEEEecCCeEEEEEEEEEcCCCCCCCHHHHHHHHHHh
Q 006208 235 GFALQKVTEERSYFRTIANMDIKLDFVPPSLINFISRQL 273 (657)
Q Consensus 235 gf~IqPlg~nkT~Vtyva~vDPKG~~IP~WLINfvaKql 273 (657)
.+.+.|+++++|.+.+.+.+.+.- .-|.-+...+.+..
T Consensus 120 ~~~~~P~~p~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~ 157 (209)
T PF00848_consen 120 VRTIIPIGPDRTEVWSWWFVPKDE-GAPPEFREARIRNW 157 (209)
T ss_dssp EEEEEEESTTEEEEEEEEEEETT---STHHHHHHHHHHH
T ss_pred EEEEEECCCCeEEEEEEEEEeCCc-ccchhhHHHHHHHH
Confidence 455899999999999999999875 35666666666654
Done!