Query 006209
Match_columns 656
No_of_seqs 373 out of 1165
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 18:55:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006209.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006209hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mtc_A Type II inositol-1,4,5- 100.0 3.4E-91 1.2E-95 731.0 31.8 229 378-613 78-308 (313)
2 4a9c_A Phosphatidylinositol-3, 100.0 2.9E-86 9.9E-91 694.8 29.5 229 378-609 80-314 (316)
3 1i9z_A Synaptojanin, phosphati 100.0 4.2E-84 1.4E-88 686.3 32.6 324 78-619 2-328 (347)
4 2xsw_A 72 kDa inositol polypho 100.0 3.7E-78 1.3E-82 643.1 30.3 228 378-612 86-326 (357)
5 2imq_X Salivary nitrophorin; f 100.0 2E-63 6.9E-68 511.2 23.5 205 378-608 72-282 (282)
6 4gz1_A Tyrosyl-DNA phosphodies 98.7 1.6E-07 5.6E-12 89.7 13.0 66 418-496 97-162 (256)
7 4fva_A 5'-tyrosyl-DNA phosphod 98.5 8.3E-07 2.9E-11 85.0 12.0 68 420-497 103-170 (256)
8 3teb_A Endonuclease/exonucleas 98.5 1.1E-06 3.9E-11 85.4 12.5 62 420-497 120-181 (266)
9 1zwx_A SMCL, sphingomyelinase- 98.4 8.1E-07 2.8E-11 88.8 10.6 70 420-498 128-201 (301)
10 4f1h_A Tyrosyl-DNA phosphodies 98.4 1.2E-06 4.3E-11 81.9 10.8 62 422-496 95-156 (250)
11 3i41_A Beta-hemolysin; beta to 98.3 2E-06 6.7E-11 88.5 9.0 71 419-498 146-220 (317)
12 4gew_A 5'-tyrosyl-DNA phosphod 98.2 6.7E-06 2.3E-10 86.9 12.5 66 421-496 210-275 (362)
13 3l1w_A Uncharacterized protein 98.2 1.5E-05 5.2E-10 77.7 13.5 62 420-496 107-170 (257)
14 1ako_A Exonuclease III; AP-end 98.1 9.4E-06 3.2E-10 78.9 10.8 68 421-498 87-157 (268)
15 3g6s_A Putative endonuclease/e 98.1 6.2E-06 2.1E-10 81.1 9.1 61 420-495 113-175 (267)
16 2ddr_A Sphingomyelin phosphodi 98.1 9.1E-06 3.1E-10 81.1 10.3 69 420-497 128-200 (306)
17 3mpr_A Putative endonuclease/e 97.8 8.2E-05 2.8E-09 75.1 10.2 63 421-496 118-182 (298)
18 2jc4_A Exodeoxyribonuclease II 97.1 0.0012 4E-08 63.6 8.5 53 436-498 98-152 (256)
19 1vyb_A ORF2 contains A reverse 96.9 0.0037 1.3E-07 59.3 10.1 54 425-497 97-150 (238)
20 1wdu_A TRAS1 ORF2P; four-layer 96.6 0.0082 2.8E-07 58.3 9.8 57 422-496 102-158 (245)
21 2o3h_A DNA-(apurinic or apyrim 96.4 0.003 1E-07 62.5 5.5 52 435-497 130-182 (285)
22 2jc5_A Exodeoxyribonuclease; h 96.4 0.0019 6.5E-08 62.2 4.0 36 107-145 2-37 (259)
23 1hd7_A DNA-(apurinic or apyrim 96.2 0.0063 2.2E-07 62.0 7.0 37 106-145 61-97 (318)
24 4b8c_D Glucose-repressible alc 96.2 0.0011 3.7E-08 76.2 1.1 62 433-496 545-607 (727)
25 2j63_A AP-endonuclease; base e 96.1 0.011 3.8E-07 65.0 8.2 35 572-606 430-466 (467)
26 3g91_A MTH0212, exodeoxyribonu 96.0 0.01 3.4E-07 58.3 6.8 36 107-145 4-39 (265)
27 2voa_A AF_EXO, XTHA, exodeoxyr 95.8 0.13 4.4E-06 49.5 13.6 51 436-496 98-150 (257)
28 2ei9_A Non-LTR retrotransposon 92.2 0.28 9.6E-06 48.5 7.4 36 106-145 7-42 (240)
29 2a40_B Deoxyribonuclease-1; WA 90.9 0.17 5.9E-06 49.6 4.3 61 423-498 111-174 (260)
30 4fva_A 5'-tyrosyl-DNA phosphod 90.8 0.035 1.2E-06 52.7 -0.7 39 104-145 11-53 (256)
31 4f1h_A Tyrosyl-DNA phosphodies 87.1 0.098 3.4E-06 48.4 -0.5 37 106-145 3-43 (250)
32 4gz1_A Tyrosyl-DNA phosphodies 84.3 0.2 6.9E-06 47.2 0.1 35 572-606 211-254 (256)
33 4gew_A 5'-tyrosyl-DNA phosphod 81.5 0.29 9.8E-06 51.5 -0.1 40 103-145 116-159 (362)
34 2ei9_A Non-LTR retrotransposon 78.6 0.22 7.4E-06 49.3 -2.0 57 421-497 76-132 (240)
35 2jc5_A Exodeoxyribonuclease; h 77.6 0.23 7.9E-06 47.5 -2.1 37 571-607 219-257 (259)
36 1ako_A Exonuclease III; AP-end 77.0 0.24 8E-06 47.7 -2.3 35 107-145 1-35 (268)
37 3g91_A MTH0212, exodeoxyribonu 76.3 0.19 6.4E-06 49.1 -3.2 35 572-606 221-257 (265)
38 3ngq_A CCR4-NOT transcription 74.7 2.5 8.4E-05 45.5 4.7 74 434-512 194-270 (398)
39 1vyb_A ORF2 contains A reverse 71.4 0.42 1.4E-05 45.0 -2.0 37 106-145 7-44 (238)
40 1sr4_B CDT B, cytolethal diste 71.2 4.2 0.00014 41.6 5.2 59 422-494 121-179 (261)
41 2voa_A AF_EXO, XTHA, exodeoxyr 69.7 0.54 1.8E-05 45.1 -1.7 35 107-145 2-36 (257)
42 2o3h_A DNA-(apurinic or apyrim 68.5 0.42 1.4E-05 46.9 -2.8 37 106-145 28-64 (285)
43 1hd7_A DNA-(apurinic or apyrim 67.1 0.48 1.6E-05 48.0 -2.8 52 435-497 163-215 (318)
44 3g6s_A Putative endonuclease/e 63.1 3.1 0.00011 40.2 2.2 36 571-607 222-261 (267)
45 2j63_A AP-endonuclease; base e 63.0 0.6 2.1E-05 51.2 -3.2 37 106-145 149-188 (467)
46 2jc4_A Exodeoxyribonuclease II 61.4 0.68 2.3E-05 44.1 -2.8 34 108-145 2-35 (256)
47 3l1w_A Uncharacterized protein 59.6 1.4 4.9E-05 42.3 -0.9 35 571-607 213-252 (257)
48 3teb_A Endonuclease/exonucleas 59.3 1.1 3.7E-05 42.9 -1.8 35 570-605 226-265 (266)
49 1wdu_A TRAS1 ORF2P; four-layer 58.2 0.8 2.7E-05 44.1 -3.0 36 106-145 19-54 (245)
50 2ddr_A Sphingomyelin phosphodi 57.3 7.2 0.00025 38.2 3.8 15 592-606 291-305 (306)
51 2f1n_A CDT B, cytolethal diste 54.5 2.8 9.6E-05 43.0 0.2 61 422-497 130-190 (262)
52 1sr4_B CDT B, cytolethal diste 51.4 4.9 0.00017 41.1 1.4 39 107-148 5-48 (261)
53 3mpr_A Putative endonuclease/e 51.1 2 6.9E-05 42.8 -1.5 40 104-145 4-52 (298)
54 2f1n_A CDT B, cytolethal diste 46.8 19 0.00066 36.9 4.9 38 106-145 15-56 (262)
55 1zwx_A SMCL, sphingomyelinase- 46.3 8.8 0.0003 37.6 2.3 15 592-606 286-300 (301)
56 3i41_A Beta-hemolysin; beta to 34.6 5.1 0.00017 40.6 -1.6 37 106-145 29-74 (317)
No 1
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=100.00 E-value=3.4e-91 Score=731.04 Aligned_cols=229 Identities=41% Similarity=0.751 Sum_probs=216.8
Q ss_pred CEEEEEeeeceeEEEEEEEeccccccccceeEeEEeeccccccCCceEEEEEEEEcCeEEEeeccccCCCCCChhHHHHH
Q 006209 378 KYVRIVSKQMVGIYVSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRN 457 (656)
Q Consensus 378 ~Yv~v~SkqMvGi~L~VfVr~~L~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~TsfcFVn~HLaAgek~g~~~rRN 457 (656)
.|++|+|.|||||+|+||||+++.++|++|++++||||+||++||||||+|||.+++|+|||||||||||++ +.++||
T Consensus 78 ~Y~~v~s~~lvGl~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~cFVnsHLaA~~~--~~~~Rn 155 (313)
T 3mtc_A 78 KYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIE--EYERRN 155 (313)
T ss_dssp CEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECSGGGTSTTSEEEEEEEEETTEEEEEEEEECCCSGG--GHHHHH
T ss_pred CEEEEEEechhhhhhhhhhhhhhhhhcceeEeeeecccccccccCCceEEEEEEECCcEEEEEeeccCCCch--HHHHHH
Confidence 599999999999999999999999999999999999999999999999999999999999999999999975 478999
Q ss_pred hhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCccccccc-cChHHHHHHHHccChhhhhcchhchHHHhcCCcccCcc
Q 006209 458 SDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLN-MMDTEVRELVAQKRWDKLINSDQLSKELHSGHVFEGWK 536 (656)
Q Consensus 458 ~D~~eIlrr~~F~~~~~~~~p~~I~dhD~vfw~GDLNYRI~-l~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~ 536 (656)
+|+.+|++++.|........|.+|.+||+|||||||||||+ ++.++++++|++++|+.||++|||+.|+++|++|.||.
T Consensus 156 ~d~~~I~~~l~f~~~~~~~~~~~i~~~d~vfw~GDLNyRi~~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~g~~f~gf~ 235 (313)
T 3mtc_A 156 QDYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFT 235 (313)
T ss_dssp HHHHHHHHHCCBCCSCSSSCCBCTTSSSEEEEEEECCCCBCSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSCTTCB
T ss_pred HHHHHHHHhcccCCCCCccCCccccCCceEEEeccccccccCCCHHHHHHHHhcCCHHHHHHhHHHHHHHHcCCccCCcc
Confidence 99999999999976443345678999999999999999996 89999999999999999999999999999999999999
Q ss_pred ccCcccCCCCCcccCCccCCCCCCCCCCcccCCCcccceeeecCCeeEEeeccC-CCCCCCCcCcccEEEEEEEeeCH
Q 006209 537 EGVINFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGKGIKQLAYTRA-EILLSDHRPVSSTFLVQVEVLDH 613 (656)
Q Consensus 537 Eg~I~FpPTYKy~~~Sd~Y~~~~~k~~~KkR~PSWCDRIL~~g~~i~~l~Y~s~-e~~~SDHRPV~A~F~v~v~vi~~ 613 (656)
||+|+|||||||+.|++.|++ ++|+|+|||||||||++++++++.|.+. ++++||||||+|.|.+++.|+-+
T Consensus 236 E~~I~F~PTYKyd~~s~~ydt-----s~k~R~PsWcDRIL~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~~~~~~~~~ 308 (313)
T 3mtc_A 236 EGELTFQPTYKYDTGSDDWDT-----SEKCRAPAWCDRILWKGKNITQLSYQSHMALKTSDHKPVSSVFDIGVRVVAH 308 (313)
T ss_dssp CCCCCSCCCBCBCTTSSSBCC-----STTCCCCBCCEEEEEEESSEEEEEEEECTTCCSSSSCCEEEEEEEEEEEECC
T ss_pred cCCcCcCCCccCcCCCccccc-----ccCEecccccceEEEecCCeEEEeeeeccCccCCCccCeEEEEEEEEEEeec
Confidence 999999999999999999985 7899999999999999999999999985 79999999999999999998854
No 2
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=100.00 E-value=2.9e-86 Score=694.77 Aligned_cols=229 Identities=34% Similarity=0.578 Sum_probs=196.7
Q ss_pred CEEEEEeeeceeEEEEEEEeccccccccceeEeEEeeccccccCCceEEEEEEEEcCeEEEeeccccCCCCCChhHHHHH
Q 006209 378 KYVRIVSKQMVGIYVSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRN 457 (656)
Q Consensus 378 ~Yv~v~SkqMvGi~L~VfVr~~L~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~TsfcFVn~HLaAgek~g~~~rRN 457 (656)
.|++|+++|||||+|+||||+++.++|++|++++||||+||++||||||+|+|.+++|+|||||||||||+++ +++||
T Consensus 80 ~Y~~v~s~~L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~~FVn~HLaAg~~~--~~~Rn 157 (316)
T 4a9c_A 80 DYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEK--TARRN 157 (316)
T ss_dssp CCEEEEEEEETTEEEEEEECGGGGGGEEEEEEEEEEEC------CEEEEEEEEEETTEEEEEEEEECCCSTTC--HHHHH
T ss_pred CEEEEEeeeehheeeeeEEeHHHhhhCcccccceeeeeeeEecCCCceEEEEEEECCcEEEEEEeccccCchH--HHHHH
Confidence 5889999999999999999999999999999999999999999999999999999999999999999999864 88999
Q ss_pred hhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCccccccccChHHHHHHHHccChhhhhcchhchHHHhcCCcccCccc
Q 006209 458 SDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLNMMDTEVRELVAQKRWDKLINSDQLSKELHSGHVFEGWKE 537 (656)
Q Consensus 458 ~D~~eIlrr~~F~~~~~~~~p~~I~dhD~vfw~GDLNYRI~l~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~E 537 (656)
+||.+|++++.|.... ......+.+||||||||||||||++++++++++|++++|+.||++|||+.|+++|++|.||+|
T Consensus 158 ~d~~~I~~~l~f~~~~-~~~~d~~~~~d~vfw~GDLNyRi~~~~~~v~~~i~~~~~~~Ll~~DQL~~e~~~g~~F~gf~E 236 (316)
T 4a9c_A 158 QNYLDILRLLSLGDRQ-LNAFDISLRFTHLFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSE 236 (316)
T ss_dssp HHHHHHHHHCCC--------CCTTTTSSEEEEEEECCCCBSSCHHHHHHHHHTTCCHHHHTTBHHHHHHHTTSSSTTCBC
T ss_pred HHHHHHHHhCCCCCCC-cCccccCCcCCeEEEcCCccCCcCCCHHHHHHHHhcccHHHHhccChHHHHHhcCCccccccc
Confidence 9999999999986421 111233467999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCCcccCCc-cCCCCCC-CCCCcccCCCcccceeeecC---CeeEEeecc-CCCCCCCCcCcccEEEEEEE
Q 006209 538 GVINFPPTYKYEINSD-RYVGENP-KEGEKKRSPAWCDRILWLGK---GIKQLAYTR-AEILLSDHRPVSSTFLVQVE 609 (656)
Q Consensus 538 g~I~FpPTYKy~~~Sd-~Y~~~~~-k~~~KkR~PSWCDRIL~~g~---~i~~l~Y~s-~e~~~SDHRPV~A~F~v~v~ 609 (656)
|+|+|||||||+.|++ .|+++.. .+++|+|+|||||||||++. .++++.|.+ .++++||||||+|.|.|.|.
T Consensus 237 ~~i~F~PTYKy~~~s~~~y~~~~~~~~~~k~R~PaWcDRIL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~v~V~ 314 (316)
T 4a9c_A 237 EEISFPPTYRYERGSRDTYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFEVGVT 314 (316)
T ss_dssp CCCCSCCCBCBCTTCSSCBCCC--------CCCCBCCEEEEEEECTTCCEEEEEEEECSSCCSSSSCCEEEEEEEECC
T ss_pred CCcccCCCccccCCCcccccccccccccccccCCcccceEEeccCCCCceEEeeecccCCcCCCCcccEEEEEEEEEE
Confidence 9999999999999995 5766443 25678999999999999975 588999997 58999999999999999874
No 3
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=100.00 E-value=4.2e-84 Score=686.30 Aligned_cols=324 Identities=34% Similarity=0.622 Sum_probs=287.2
Q ss_pred CCCchhhH-hhhcccccccccccceeeeEEEEEeeeeCCCCCCCCCCCcccccCC--CCCCCEEEEeeeeeeeCCCCCcc
Q 006209 78 TPSKGYHL-RHRRGKSETLRVQYINTKDVRVTIGTWNVAGRQPYEDLDIDDWLCT--QEPADIYIFGFQEVVPLNAGNVL 154 (656)
Q Consensus 78 ~~~~~~~~-~~rr~~se~~r~~y~~~~~~ri~vgTWNV~G~~p~~~ldl~~WL~~--~~~~DIYvlGfQEiV~Lna~nvl 154 (656)
||+++++. +|++|.+| |+..++++||||||||||+.| +.||.+||.+ ..+||||||||||||+|++++++
T Consensus 2 ~p~~~~~~~~l~~r~~e-----~~~~~~~~i~v~TwNv~g~~~--~~~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~ 74 (347)
T 1i9z_A 2 DPIHEYVNHELRKRENE-----FSEHKNVKIFVASYNLNGCSA--TTKLENWLFPENTPLADIYVVGFQEIVQLTPQQVI 74 (347)
T ss_dssp CHHHHHHHHHHHHTGGG-----TEEEEEEEEEEEEEECTTCCC--CSCCHHHHSCSSSCCCSEEEEEEECSSCCC-----
T ss_pred CchHHHHHHHHHHHHHh-----cCCCCCcEEEEEeEecCCCCC--chhHHHHhccccCCCCCEEEEEeEEeecCchhhhc
Confidence 68888887 78887664 999999999999999999888 4569999987 36899999999999999999999
Q ss_pred ccCCCCChhHHHHHHHHHhccCCCCcccccccCCCCCCCcCCCchhhhhhhhhhcccCCCccCcccccccccccCCCCCc
Q 006209 155 GAESSRPIPKWEAIIRRTLNKSAEPENKYKSYSAPPSPVLRTSSVADELADELADEIDDLPLGITSEEYASITNGCNVGR 234 (656)
Q Consensus 155 ~~ed~~~~~~W~~~I~~~Ln~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~e~d~~~~~~~~~~~~~~~~~~~~~~ 234 (656)
+. |+.+...|+.+|+++|+....
T Consensus 75 ~~-~~~~~~~w~~~i~~~L~~~~~-------------------------------------------------------- 97 (347)
T 1i9z_A 75 SA-DPAKRREWESCVKRLLNGKCT-------------------------------------------------------- 97 (347)
T ss_dssp CC-CHHHHHHHHHHHHHHHHHTCC--------------------------------------------------------
T ss_pred cc-CchhHHHHHHHHHHHHhhccc--------------------------------------------------------
Confidence 65 556688999999999874210
Q ss_pred ccchhhhccccccccccccccccCCCCCCCCCCCCCCchhhhhhhhhhhhccccccccccccCCCCCCCcccccccCCCc
Q 006209 235 EDLKKVISIGKNLHLSRIYGVDYDRRLDWPEHSFDATPQVISSNLKLRRVFSSSARIGFTLVDNPPMLSPQHFAINGNGL 314 (656)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~r~~~~~~~~p~~~~~~~~~~~~~~~ 314 (656)
T Consensus 98 -------------------------------------------------------------------------------- 97 (347)
T 1i9z_A 98 -------------------------------------------------------------------------------- 97 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCccccchhhccCCcccccccccCCCCCCcccccccCCCcccccchHHHHhhccCCCCEEEEEeeeceeEEEEE
Q 006209 315 KRSHHSYGNLVSTWMEQQEEPEVVESVSDVSDGFSDEEFDAFSETPKEKHNDAAIRDTAKSRPKYVRIVSKQMVGIYVSI 394 (656)
Q Consensus 315 ~~~~~s~~~~~s~~~~~~~~~~~~~s~~~~~~~~s~~e~~~~~~~~~~~~~~~~~~~~~~~~~~Yv~v~SkqMvGi~L~V 394 (656)
....|+++.++||+|++|+|
T Consensus 98 ------------------------------------------------------------~~~~Y~~v~s~~l~g~~L~V 117 (347)
T 1i9z_A 98 ------------------------------------------------------------SGPGYVQLRSGQLVGTALMI 117 (347)
T ss_dssp ------------------------------------------------------------SSCCEEEEEEEEETTEEEEE
T ss_pred ------------------------------------------------------------CCCceeEEEEeeccceEEEE
Confidence 01369999999999999999
Q ss_pred EEeccccccccceeEeEEeeccccccCCceEEEEEEEEcCeEEEeeccccCCCCCChhHHHHHhhHHHHHhhcCcCCCCC
Q 006209 395 WVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFD 474 (656)
Q Consensus 395 fVr~~L~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~TsfcFVn~HLaAgek~g~~~rRN~D~~eIlrr~~F~~~~~ 474 (656)
|||.++.++|++|++++|+||++|++||||||+|+|.+++++||||||||+||+.+ ..+||+|+.+|++++.|..
T Consensus 118 fvr~~~~~~i~~v~~~~v~tG~~g~~gnKGav~vr~~~~~~~l~fvn~HLaa~~~~--~~~R~~d~~~I~~~l~f~~--- 192 (347)
T 1i9z_A 118 FCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTN--YDERDHDYRTIASGLRFRR--- 192 (347)
T ss_dssp EEEGGGGGGEEEEEEEEEECCCC----CCEEEEEEEEETTEEEEEEEEECCCCSSC--HHHHHHHHHHHHHHCCCGG---
T ss_pred EEehHhhhhccceeeeeEeccCCCccCCCceEEEEEEECCeEEEEEEecCCCCCcc--HHHHHHHHHHHHHhhccCc---
Confidence 99999999999999999999999999999999999999999999999999999865 5679999999999999864
Q ss_pred CCCCCCCCCcceEEEeCccccccccChHHHHHHHHccChhhhhcchhchHHHhcCCcccCccccCcccCCCCCcccCCcc
Q 006209 475 TDQPQTIPSHDQIFWFGDLNYRLNMMDTEVRELVAQKRWDKLINSDQLSKELHSGHVFEGWKEGVINFPPTYKYEINSDR 554 (656)
Q Consensus 475 ~~~p~~I~dhD~vfw~GDLNYRI~l~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~Sd~ 554 (656)
+..|.+||++||||||||||+++.+.++++|++++|+.||++|||+.++++|++|.||.|++|+|+|||||+.+++.
T Consensus 193 ---~~~i~~~d~v~~~GDlNyRi~~~~~~v~~~i~~~~~~~Ll~~DqL~~~~~~~~~f~~f~E~~i~F~PTYK~~~~~~~ 269 (347)
T 1i9z_A 193 ---GRSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDI 269 (347)
T ss_dssp ---GCCTTSSSEEEEEEECCCCBSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTSSC
T ss_pred ---ccccccCccEEEecccccccCCCHHHHHHHHhhccHHHhhcccHHHHHHhcCCcccccccCCCCCCCCcccCCCCcc
Confidence 24588999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccCCCcccceeeecCCeeEEeeccCCCCCCCCcCcccEEEEEEEeeCHHHHhhh
Q 006209 555 YVGENPKEGEKKRSPAWCDRILWLGKGIKQLAYTRAEILLSDHRPVSSTFLVQVEVLDHRKLKRA 619 (656)
Q Consensus 555 Y~~~~~k~~~KkR~PSWCDRIL~~g~~i~~l~Y~s~e~~~SDHRPV~A~F~v~v~vi~~~klq~~ 619 (656)
|++ ++|+|+|||||||||++ +++++.|.+.++++||||||+|.|.+.|.++++++.++.
T Consensus 270 yd~-----s~k~R~PsWcDRIL~~~-~l~~~~Y~~~~~~~SDH~PV~a~f~~~v~~~~~~~~~~~ 328 (347)
T 1i9z_A 270 YDT-----SDKHRVPAWTDRILYRG-ELVPHSYQSVPLYYSDHRPIYATYEANIVKVDREKKKIL 328 (347)
T ss_dssp BCC-----STTCCCCBCCEEEEEES-SCEEEEEEECCCCSSSBCCEEEEEEEEEEEECHHHHHHH
T ss_pred ccc-----cccccCCcccceEEEeC-CEEEEEEEecCccCCCcCCceeEEEEEEecCCHHHHHHH
Confidence 984 78999999999999998 899999999889999999999999999999998886554
No 4
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=100.00 E-value=3.7e-78 Score=643.06 Aligned_cols=228 Identities=30% Similarity=0.537 Sum_probs=207.8
Q ss_pred CEEEEEeeeceeEEEEEEEeccccccccceeEeEEeeccccccCCceEEEEEEEEcCeEEEeeccccCCCCCChhHHHHH
Q 006209 378 KYVRIVSKQMVGIYVSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRN 457 (656)
Q Consensus 378 ~Yv~v~SkqMvGi~L~VfVr~~L~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~TsfcFVn~HLaAgek~g~~~rRN 457 (656)
.|+++.+.||+|++|+||||.++.++|++|++++|+||+||++||||||+|+|.+++|+||||||||+||+++ .++||
T Consensus 86 ~Y~~v~s~~l~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gNKGav~vr~~~~~t~~~Fvn~HLaa~~~~--~~~Rn 163 (357)
T 2xsw_A 86 HYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTSGDGK--VAERL 163 (357)
T ss_dssp TEEEEEEEEETTEEEEEEEEGGGGGGBBCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEECCCSTTC--HHHHH
T ss_pred cccchhhhhhhhEEEEEEEchHHhhcCceeEecccccccccccccccEEEEEEEECCeEEEEEEEccCCCCch--HHHHH
Confidence 5888999999999999999999999999999999999999999999999999999999999999999999864 78999
Q ss_pred hhHHHHHhhcCcCCCCCCC------CCCCCCCcceEEEeCccccccccChHHHHHHHH---ccChhhhhcchhchHHHhc
Q 006209 458 SDVSEIRRRTRFSSVFDTD------QPQTIPSHDQIFWFGDLNYRLNMMDTEVRELVA---QKRWDKLINSDQLSKELHS 528 (656)
Q Consensus 458 ~D~~eIlrr~~F~~~~~~~------~p~~I~dhD~vfw~GDLNYRI~l~~~ev~~lI~---~~~~~~LL~~DQL~~e~~~ 528 (656)
+|+.+|++++.|+...... ....+.+||+|||||||||||++++++++++|. .++|+.||++|||+.++++
T Consensus 164 ~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~~~~~~v~~~i~~~~~~~~~~Ll~~DQL~~~~~~ 243 (357)
T 2xsw_A 164 LDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSGGRTVVDALLCQGLVVDVPALLQHDQLIREMRK 243 (357)
T ss_dssp HHHHHHHHHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBSSCHHHHHHHHC---CCCHHHHHTTBHHHHHHHH
T ss_pred HHHHHHHHHhcccccccccccccccccccccccceEEEecccCcccccchHHHHHHHhhcchhhHHHHHhcChhHHHHhc
Confidence 9999999999996432111 112345799999999999999999999999996 5799999999999999999
Q ss_pred CCcccCccccCcccCCCCCcccCCccCCCCCCCCCCcccCCCcccceeeecC---CeeEEeecc-CCCCCCCCcCcccEE
Q 006209 529 GHVFEGWKEGVINFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGK---GIKQLAYTR-AEILLSDHRPVSSTF 604 (656)
Q Consensus 529 g~vF~gf~Eg~I~FpPTYKy~~~Sd~Y~~~~~k~~~KkR~PSWCDRIL~~g~---~i~~l~Y~s-~e~~~SDHRPV~A~F 604 (656)
|++|.||+|++|+|||||||+.+++.|++ ++|+|+|||||||||++. +++++.|.+ .++++||||||+|.|
T Consensus 244 g~~F~gf~E~~I~F~PTYKy~~~t~~Ydt-----s~k~R~PaWcDRIL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f 318 (357)
T 2xsw_A 244 GSIFKGFQEPDIHFLPSYKFDIGKDTYDS-----TSKQRTPSYTDRVLYRSRHKGDICPVSYSSCPGIKTSDHRPVYGLF 318 (357)
T ss_dssp TSSSTTCBCCCCCSCCCBCBCTTSSSBCC-----STTCCCCBCCEEEEEEESSTTSEEEEEEEECTTCCSSSSCCEEEEE
T ss_pred cccccCccccCCCCCCCccccCCCccccc-----cCCCCCCcccceEEEecCCCCceEEEEeEecccccCCCcCCceeEE
Confidence 99999999999999999999999999984 689999999999999964 799999999 589999999999999
Q ss_pred EEEEEeeC
Q 006209 605 LVQVEVLD 612 (656)
Q Consensus 605 ~v~v~vi~ 612 (656)
.+.|....
T Consensus 319 ~v~v~~~~ 326 (357)
T 2xsw_A 319 RVKVRPGR 326 (357)
T ss_dssp EEECCCCC
T ss_pred EEEEecCC
Confidence 99987654
No 5
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=100.00 E-value=2e-63 Score=511.19 Aligned_cols=205 Identities=26% Similarity=0.490 Sum_probs=185.3
Q ss_pred CEEEEEe--eeceeEEEEEEEeccccccccceeEeEEeeccccccCCceEEEEEEEEcCeEEEeeccccCCCCCChhHHH
Q 006209 378 KYVRIVS--KQMVGIYVSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQR 455 (656)
Q Consensus 378 ~Yv~v~S--kqMvGi~L~VfVr~~L~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~TsfcFVn~HLaAgek~g~~~r 455 (656)
.|+++.+ .+|+|++|+||+|.++.++|+++.+ +|++|.+||||+|+++|.+++++||||||||+|++.+ .++
T Consensus 72 ~Y~~v~~~~~~~~G~~l~vf~k~~~~~~i~~~~~----~~~~g~~g~kGav~~r~~~~~~~~~fvn~HL~~~~~~--~~~ 145 (282)
T 2imq_X 72 GYTKLKNTITETMGLTVYCLEKHLDQNTLKNETI----IVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVT--STN 145 (282)
T ss_dssp TEEEEEEEECSSEEEEEEEEGGGCCTTTCCCEEE----EEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCC--TTS
T ss_pred ceEEEEeccCceeEEEEEEEEccccCccceeeee----ccccccccCCceEEEEEEECCEEEEEEEECCCCCCch--HHH
Confidence 4666666 7899999999999999999888765 5678899999999999999999999999999998543 567
Q ss_pred HHhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCccccccccChHHHHHHHHccChhhhhcchhchHHHhcCCcccCc
Q 006209 456 RNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLNMMDTEVRELVAQKRWDKLINSDQLSKELHSGHVFEGW 535 (656)
Q Consensus 456 RN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~vfw~GDLNYRI~l~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf 535 (656)
||+++..|++++.+ +.++++|||+||||||++.+.++++++|++++|..|+++|||..+++ |.+|.||
T Consensus 146 R~~~~~~I~~~~~~-----------~~~~~~vi~~GDfN~r~~~~~~~~~~~i~~~~~~~l~~~DqL~~~~~-~~~f~~f 213 (282)
T 2imq_X 146 TKYAYDTRLDYSKK-----------DDPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLKKAKE-QKLFDGW 213 (282)
T ss_dssp SSSSCCGGGCTTSS-----------SSCCSEEEEEEECSCCBCSCHHHHHHHHHTTCHHHHHTTBTHHHHHH-TTSSTTC
T ss_pred HHHHHHHHHHhhhc-----------cCccceEEEecccccccCCCHHHHHHHHhhccHHHHhhhhHHHHhhc-ccccccc
Confidence 99999999876543 45689999999999999999999999999999999999999999999 9999999
Q ss_pred cccCcccCCCCCcccCCccCCCCCCCCCCcccCCCcccceeeec---CCeeEEeeccC-CCCCCCCcCcccEEEEEE
Q 006209 536 KEGVINFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLG---KGIKQLAYTRA-EILLSDHRPVSSTFLVQV 608 (656)
Q Consensus 536 ~Eg~I~FpPTYKy~~~Sd~Y~~~~~k~~~KkR~PSWCDRIL~~g---~~i~~l~Y~s~-e~~~SDHRPV~A~F~v~v 608 (656)
.|++|+|+|||||+.+++.|+. +|+|||||||||++ .+++++.|.+. ++.+|||+||+|.|.+++
T Consensus 214 ~e~~i~f~PTYk~~~~~~~y~~--------~R~Psw~DrIl~~~~~~~~~~~~~y~~~~~~~~SDH~PV~a~f~~~~ 282 (282)
T 2imq_X 214 TEPQVTFKPTYKFKPNTDEYDL--------SATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRVTL 282 (282)
T ss_dssp BCCCCCSCCCBCBCTTSSCBCT--------TSCCBCCEEEEEECSSSCCEEEEEEEECTTCCSSSSCCEEEEEEEEC
T ss_pred ccCCcCCCCCccccCCCccccc--------cCCccccceEEEecCCCCceEeeEecCCCCCCCCCcCCeEEEEEEEC
Confidence 9999999999999999999974 79999999999996 47999999997 799999999999998764
No 6
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=98.67 E-value=1.6e-07 Score=89.72 Aligned_cols=66 Identities=21% Similarity=0.360 Sum_probs=48.6
Q ss_pred cccCCceEEEEEEEEcCeEEEeeccccCCCCCChhHHHHHhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCccccc
Q 006209 418 GYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYR 496 (656)
Q Consensus 418 G~lGNKGaVsVs~~l~~TsfcFVn~HLaAgek~g~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~vfw~GDLNYR 496 (656)
+....++.+.+.+.+.+..|+++|+||.++... ...|...+.+|++.+.- ......+|++||||..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~--~~~~~~q~~~~~~~l~~-----------~~~~~pvIl~GDfN~~ 162 (256)
T 4gz1_A 97 NTKMMRNLLCVNVSLGGNEFCLMTSHLESTREH--SAERIRQLKTVLGKMQE-----------APDSTTVIFAGDTNLR 162 (256)
T ss_dssp TCSSCCEEEEEEEEETTEEEEEEECBCCCSGGG--HHHHHHHHHHHHHHHHH-----------SCTTSEEEEEEECCCC
T ss_pred cccccceEEEEEEEeCCEEEEEEeecccccccc--hhhhhHHHHHHhhhhhh-----------ccCcceEEEeCccCCC
Confidence 445567889999999999999999999987543 45566777777765421 1123479999999964
No 7
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=98.48 E-value=8.3e-07 Score=85.01 Aligned_cols=68 Identities=18% Similarity=0.141 Sum_probs=45.2
Q ss_pred cCCceEEEEEEEEcCeEEEeeccccCCCCCChhHHHHHhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCcccccc
Q 006209 420 MGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (656)
Q Consensus 420 lGNKGaVsVs~~l~~TsfcFVn~HLaAgek~g~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~vfw~GDLNYRI 497 (656)
.+..+.+.+.+.+.+..|.++|+||.+.... ...|...+..++..+..... ......+|++||||.+-
T Consensus 103 ~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~--~~~~~~q~~~~~~~~~~~~~--------~~~~~~vIl~GDfN~~~ 170 (256)
T 4fva_A 103 GMYRTLQILEGSIGGLKVFLLNTHLESTREH--RPQRCAQFGFCMDKVREIIA--------QNPGALVFFGGDLNLRD 170 (256)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEEECCCSGGG--HHHHHHHHHHHHHHHHHHHH--------HSTTCEEEEEEECCCCG
T ss_pred cccceeEEEEEEeCCeEEEEEEecCCCCCcc--hHHHHHHHHHHHHHhhhhhh--------ccCCCcEEEeccCCCCc
Confidence 4567888899999999999999999987543 34455555555443211000 01235799999999653
No 8
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=98.46 E-value=1.1e-06 Score=85.36 Aligned_cols=62 Identities=15% Similarity=0.265 Sum_probs=48.2
Q ss_pred cCCceEEEEEEEEcCeEEEeeccccCCCCCChhHHHHHhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCcccccc
Q 006209 420 MGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (656)
Q Consensus 420 lGNKGaVsVs~~l~~TsfcFVn~HLaAgek~g~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~vfw~GDLNYRI 497 (656)
...+|++.+.+.+.+..|+++|+||.+.... ...|..++..|++.+. ....+|++||||-.-
T Consensus 120 ~~~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~--~~~r~~q~~~l~~~~~--------------~~~~~il~GDfN~~~ 181 (266)
T 3teb_A 120 ISARRIVSITINYEGQDIEFYSCHMNLPNCE--TEDMGKNIQTILNRTQ--------------NSNLKILMGDFNTDA 181 (266)
T ss_dssp TTCCEEEEEEEEETTEEEEEEEEECCCTTCT--TCCHHHHHHHHHTSSC--------------SCCEEEEEEECCCCT
T ss_pred cccceEEEEEEEeCCeEEEEEEecCCCccCC--hHHHHHHHHHHHHHHh--------------cCCcEEEEeECCCCC
Confidence 3568999999999999999999999987432 2347778888876432 146899999999875
No 9
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=98.42 E-value=8.1e-07 Score=88.79 Aligned_cols=70 Identities=23% Similarity=0.288 Sum_probs=50.5
Q ss_pred cCCceEEEEEEEEcCeEEEeeccccCCCCCC----hhHHHHHhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCcccc
Q 006209 420 MGNKGSVSVSMTLFQSRLCLVCSHLTSGQKD----GAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNY 495 (656)
Q Consensus 420 lGNKGaVsVs~~l~~TsfcFVn~HLaAgek~----g~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~vfw~GDLNY 495 (656)
..++|++.+.+.+.+..|+++|+||.++... .....|...+..|.+.+.=. .+.....+|++||||-
T Consensus 128 ~~~r~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~---------~~~~~~pvIl~GDfN~ 198 (301)
T 1zwx_A 128 LSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKK---------NIPKDEIIFIGGDLNV 198 (301)
T ss_dssp GBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHH---------TCCTTSEEEEEEECCC
T ss_pred ccCCCeEEEEEEECCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHh---------CCCCCCeEEEEeeCCC
Confidence 4579999999999999999999999987432 23556778877776543200 0112357999999997
Q ss_pred ccc
Q 006209 496 RLN 498 (656)
Q Consensus 496 RI~ 498 (656)
.-.
T Consensus 199 ~~~ 201 (301)
T 1zwx_A 199 NYG 201 (301)
T ss_dssp CTT
T ss_pred CCC
Confidence 765
No 10
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=98.40 E-value=1.2e-06 Score=81.93 Aligned_cols=62 Identities=23% Similarity=0.372 Sum_probs=44.9
Q ss_pred CceEEEEEEEEcCeEEEeeccccCCCCCChhHHHHHhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCccccc
Q 006209 422 NKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYR 496 (656)
Q Consensus 422 NKGaVsVs~~l~~TsfcFVn~HLaAgek~g~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~vfw~GDLNYR 496 (656)
..+.+.+.+.+.+..|+++++||.+... ....|...+.+|++.+.= ......+|++||||-.
T Consensus 95 ~~~~~~~~~~~~~~~~~v~~~hl~~~~~--~~~~r~~q~~~~~~~l~~-----------~~~~~pvIl~GDfN~~ 156 (250)
T 4f1h_A 95 MRNLLIAQVTFSGQKLYLMTSHLESCKN--QSQERTKQLRVVLQKIKE-----------APEDAIVIFAGDTNLR 156 (250)
T ss_dssp CCEEEEEEEEETTEEEEEEECBCCCSGG--GHHHHHHHHHHHHHHHHH-----------SCTTEEEEEEEECCCC
T ss_pred cceEEEEEEecCCcEEEEeccccccccc--cHHHHHHHHHHHHHHHHh-----------cCCCCCEEEEEecCCC
Confidence 3566778888899999999999998754 345677777777765421 1123479999999953
No 11
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=98.25 E-value=2e-06 Score=88.47 Aligned_cols=71 Identities=21% Similarity=0.275 Sum_probs=52.2
Q ss_pred ccCCceEEEEEEEEcCeEEEeeccccCCCCCC----hhHHHHHhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCccc
Q 006209 419 YMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKD----GAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLN 494 (656)
Q Consensus 419 ~lGNKGaVsVs~~l~~TsfcFVn~HLaAgek~----g~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~vfw~GDLN 494 (656)
...+||.+.+.+.+.+..|.++|+||.+.... .....|...+..|.+.+.=. .+.....||++||||
T Consensus 146 ~~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~---------~~~~~~pvIl~GDfN 216 (317)
T 3i41_A 146 NDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKK---------NIPKDETVYIGGDLN 216 (317)
T ss_dssp GGBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHH---------TCCTTSCEEEEEECC
T ss_pred cccCcceEEEEEEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHh---------ccCCCCeEEEEeECC
Confidence 46789999999999999999999999986421 24677888888877643210 011235799999999
Q ss_pred cccc
Q 006209 495 YRLN 498 (656)
Q Consensus 495 YRI~ 498 (656)
-.-.
T Consensus 217 ~~~~ 220 (317)
T 3i41_A 217 VNKG 220 (317)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 7763
No 12
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=98.22 E-value=6.7e-06 Score=86.94 Aligned_cols=66 Identities=18% Similarity=0.177 Sum_probs=45.5
Q ss_pred CCceEEEEEEEEcCeEEEeeccccCCCCCChhHHHHHhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCccccc
Q 006209 421 GNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYR 496 (656)
Q Consensus 421 GNKGaVsVs~~l~~TsfcFVn~HLaAgek~g~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~vfw~GDLNYR 496 (656)
...+++.+.+.+.+..|+++|+||.++.. ....|...+..++..+.-... ......||++||||-+
T Consensus 210 ~~r~~l~~~i~~~g~~l~v~ntHL~s~~~--~~~~R~~Q~~~l~~~~~~~~~--------~~~~~pvIl~GDFN~~ 275 (362)
T 4gew_A 210 MYRTLQILEGSIGGLKVFLLNTHLESTRE--HRPQRCAQFGFCMDKVREIIA--------QNPGALVFFGGDLNLR 275 (362)
T ss_dssp SCCEEEEEEEEETTEEEEEEEEECCCSGG--GHHHHHHHHHHHHHHHHHHHH--------HCTTCEEEEEEECCCC
T ss_pred ccceEEEEEEEECCEEEEEEEecCCcccc--chhHHHHHHHHHHHHhHhhhh--------cCCCCCeEEeecCCCC
Confidence 34678888999999999999999998753 345677777666553221000 0123479999999965
No 13
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=98.19 E-value=1.5e-05 Score=77.69 Aligned_cols=62 Identities=13% Similarity=0.074 Sum_probs=44.6
Q ss_pred cCCceEEEEEEEEc--CeEEEeeccccCCCCCChhHHHHHhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCccccc
Q 006209 420 MGNKGSVSVSMTLF--QSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYR 496 (656)
Q Consensus 420 lGNKGaVsVs~~l~--~TsfcFVn~HLaAgek~g~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~vfw~GDLNYR 496 (656)
...++++.+.+... +..|+++|+||.+.. ...|...+..|++.+.= .+.. +.+|++||||-.
T Consensus 107 ~~~r~~~~~~~~~~~~g~~~~v~~~Hl~~~~----~~~r~~q~~~l~~~i~~----------~~~~-~pvil~GDfN~~ 170 (257)
T 3l1w_A 107 GCPRIALWGLFKETTQNTPFLVINVHLDHIS----AHARLAGMTVILEELHD----------KIAQ-YPTLLMGDFNAE 170 (257)
T ss_dssp SSCCEEEEEEEEETTCSSCEEEEEEECCSSC----HHHHHHHHHHHHHHTHH----------HHHH-SCEEEEEECCCC
T ss_pred cccceeEEEEEEEcCCCCEEEEEEeCCCCCC----HHHHHHHHHHHHHHHHH----------HcCC-CCEEEEeeCCCC
Confidence 45788888998884 679999999998863 35677888888765430 0001 269999999963
No 14
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=98.14 E-value=9.4e-06 Score=78.94 Aligned_cols=68 Identities=6% Similarity=0.164 Sum_probs=45.9
Q ss_pred CCceEEEEEEEEcCeEEEeeccccCCCCCCh---hHHHHHhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCcccccc
Q 006209 421 GNKGSVSVSMTLFQSRLCLVCSHLTSGQKDG---AEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (656)
Q Consensus 421 GNKGaVsVs~~l~~TsfcFVn~HLaAgek~g---~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~vfw~GDLNYRI 497 (656)
.+++++.+.+.+.+..|+++|+||.++.... ....|.+.+.+|...+.- . ......+|++||||-..
T Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~r~~~~~~l~~~~~~--~--------~~~~~~~Il~GDFN~~~ 156 (268)
T 1ako_A 87 AQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLET--E--------LKRDNPVLIMGDMNISP 156 (268)
T ss_dssp HHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHHHH--H--------CCTTSCEEEEEECCCCC
T ss_pred cCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHHHHHHHHHHHHHHHHH--h--------hhCCCCEEEEeECCCCC
Confidence 4578899999998899999999999875321 233455656555543220 0 01235799999999654
Q ss_pred c
Q 006209 498 N 498 (656)
Q Consensus 498 ~ 498 (656)
+
T Consensus 157 ~ 157 (268)
T 1ako_A 157 T 157 (268)
T ss_dssp S
T ss_pred c
Confidence 3
No 15
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=98.12 E-value=6.2e-06 Score=81.06 Aligned_cols=61 Identities=16% Similarity=0.101 Sum_probs=42.7
Q ss_pred cCCceEEEEEEEE--cCeEEEeeccccCCCCCChhHHHHHhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCcccc
Q 006209 420 MGNKGSVSVSMTL--FQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNY 495 (656)
Q Consensus 420 lGNKGaVsVs~~l--~~TsfcFVn~HLaAgek~g~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~vfw~GDLNY 495 (656)
..+++++.+.+.. .+..|+++|+||.+.. ...|...+..|++.+.= +.....+|++||||-
T Consensus 113 ~~~R~~~~~~~~~~~~~~~~~v~~~Hl~~~~----~~~R~~q~~~l~~~l~~-----------~~~~~pvIl~GDfN~ 175 (267)
T 3g6s_A 113 VCVRIATWAKFKDKATGKIFMAVNTHFDHVG----EEARRQSALLIIRKIKE-----------IVGERPAVVTGDFNV 175 (267)
T ss_dssp SSCCEEEEEEEEETTTCCEEEEEEEECCSSC----HHHHHHHHHHHHHHHHH-----------HTTTSCEEEEEECSS
T ss_pred cCcceEEEEEEEEcCCCCEEEEEEeCCCCCC----HHHHHHHHHHHHHHHHH-----------hcCCCCEEEEeECCC
Confidence 3467888888885 5789999999998753 45666666666654320 001246999999996
No 16
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=98.11 E-value=9.1e-06 Score=81.13 Aligned_cols=69 Identities=20% Similarity=0.315 Sum_probs=48.3
Q ss_pred cCCceEEEEEEEEcCeEEEeeccccCCCCCC----hhHHHHHhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCcccc
Q 006209 420 MGNKGSVSVSMTLFQSRLCLVCSHLTSGQKD----GAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNY 495 (656)
Q Consensus 420 lGNKGaVsVs~~l~~TsfcFVn~HLaAgek~----g~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~vfw~GDLNY 495 (656)
..++|++.+.+.+.+..|.++|+||.+.... .....|...+.+|.+.+.=.. +.....+|++||||-
T Consensus 128 ~~~r~~~~~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~---------~~~~~pvil~GDfN~ 198 (306)
T 2ddr_A 128 LSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNKN---------IPNNEYVLIGGDMNV 198 (306)
T ss_dssp CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHHT---------CCTTSCEEEEEECCC
T ss_pred hcCCCeEEEEEEeCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhc---------CCCCCEEEEEeeCCC
Confidence 4578999999999999999999999987421 135567777877765432100 112347999999998
Q ss_pred cc
Q 006209 496 RL 497 (656)
Q Consensus 496 RI 497 (656)
.-
T Consensus 199 ~~ 200 (306)
T 2ddr_A 199 NK 200 (306)
T ss_dssp CC
T ss_pred Cc
Confidence 66
No 17
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=97.77 E-value=8.2e-05 Score=75.11 Aligned_cols=63 Identities=8% Similarity=-0.039 Sum_probs=41.7
Q ss_pred CCceEEEEEEEE--cCeEEEeeccccCCCCCChhHHHHHhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCccccc
Q 006209 421 GNKGSVSVSMTL--FQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYR 496 (656)
Q Consensus 421 GNKGaVsVs~~l--~~TsfcFVn~HLaAgek~g~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~vfw~GDLNYR 496 (656)
-+++++.+.|.. .+..|+++|+||.+.. ...|...+..|++.+.= ... . ....+|++||||-.
T Consensus 118 ~~R~~~~~~~~~~~~g~~~~v~~~Hl~~~~----~~~R~~q~~~l~~~i~~--~~~---~----~~~pvIl~GDfN~~ 182 (298)
T 3mpr_A 118 LPRICSWGHFKCKDTGFEFLFFNLHMDHIG----KKARVESAFLVQEKMKE--LGR---G----KNLPAILTGDFNVD 182 (298)
T ss_dssp SCCEEEEEEEEETTTCCEEEEEEEECCSSC----HHHHHHHHHHHHHHHHH--TTT---T----SCCCEEEEEECSSC
T ss_pred cCceeEEEEEEEcCCCCEEEEEEecCCCCC----HHHHHHHHHHHHHHHHH--Hhc---C----CCCcEEEEEeCCCC
Confidence 356777777773 5779999999998642 35677777777654321 000 0 12469999999954
No 18
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=97.11 E-value=0.0012 Score=63.61 Aligned_cols=53 Identities=11% Similarity=0.144 Sum_probs=31.2
Q ss_pred EEEeeccccCCCCCCh--hHHHHHhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCccccccc
Q 006209 436 RLCLVCSHLTSGQKDG--AEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLN 498 (656)
Q Consensus 436 sfcFVn~HLaAgek~g--~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~vfw~GDLNYRI~ 498 (656)
.|+++|+||.++...+ ....|.+.+.+|...+.- . +.....+|++||||-...
T Consensus 98 ~~~v~~~h~~~~~~~~~~~~~~r~~~~~~l~~~~~~--~--------~~~~~~~il~GDFN~~~~ 152 (256)
T 2jc4_A 98 GVRVINVYCVNGEALDSPKFKYKEQWFAALTEFVRD--E--------MTRHGKLVLLGDFNIAPA 152 (256)
T ss_dssp TEEEEEEECCCCCSTTSHHHHHHHHHHHHHHHHHHH--H--------HTTCSSEEEEEECCCCCS
T ss_pred CEEEEEEEecCCCCCCcHhHHHHHHHHHHHHHHHHH--H--------hcCCCCEEEEeECCCCCc
Confidence 7999999999876422 223354444444332210 0 011346999999997654
No 19
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=96.94 E-value=0.0037 Score=59.27 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=35.3
Q ss_pred EEEEEEEEcCeEEEeeccccCCCCCChhHHHHHhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCcccccc
Q 006209 425 SVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (656)
Q Consensus 425 aVsVs~~l~~TsfcFVn~HLaAgek~g~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~vfw~GDLNYRI 497 (656)
.+.+.+.+.+..|.++|+|++++.. .+. +.++++.+.= . ....+|++||||-..
T Consensus 97 ~i~~~~~~~~~~~~v~~~y~p~~~~----~~~---~~~l~~~l~~-------~-----~~~~~Il~GDFN~~~ 150 (238)
T 1vyb_A 97 YIMVKGSIQQEELTILNIYAPNTGA----PRF---IKQVLSDLQR-------D-----LDSHTLIMGDFNTPL 150 (238)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSSH----HHH---HHHHHHHTTT-------T-----CCTTEEEEEECSSCS
T ss_pred EEEEEEEeCCCcEEEEEEecCCCCc----HHH---HHHHHHHHHh-------c-----cCCCEEEEccCCCCC
Confidence 5667777888999999999998642 111 3334443220 0 124699999999743
No 20
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=96.59 E-value=0.0082 Score=58.28 Aligned_cols=57 Identities=14% Similarity=0.210 Sum_probs=40.0
Q ss_pred CceEEEEEEEEcCeEEEeeccccCCCCCChhHHHHHhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCccccc
Q 006209 422 NKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYR 496 (656)
Q Consensus 422 NKGaVsVs~~l~~TsfcFVn~HLaAgek~g~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~vfw~GDLNYR 496 (656)
..|.+.+.+.+.+..|.++|+|+..+... ..+.+.+.++++.+ ....+|++||||-.
T Consensus 102 ~~~~~~~~i~~~~~~~~v~~vy~p~~~~~---~~~~~~l~~~~~~~---------------~~~~~Ii~GDfN~~ 158 (245)
T 1wdu_A 102 TNNIVVVGIRTRAWEITLVSYYFEPDKPI---ESYLEQIKRVERKM---------------GPKRLIFGGDANAK 158 (245)
T ss_dssp CSSEEEEEEECSSCEEEEEEEECCTTSCS---HHHHHHHHHHHHTT---------------CSSSEEEEEECCCC
T ss_pred cCCEEEEEEEcCCCcEEEEEEEeCCCCCH---HHHHHHHHHHHHHh---------------CCCcEEEEeccccC
Confidence 46778888888888999999999987531 23344555665421 12369999999954
No 21
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=96.42 E-value=0.003 Score=62.49 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=30.5
Q ss_pred eEEEeeccccCCCCCC-hhHHHHHhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCcccccc
Q 006209 435 SRLCLVCSHLTSGQKD-GAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (656)
Q Consensus 435 TsfcFVn~HLaAgek~-g~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~vfw~GDLNYRI 497 (656)
..|.++|+||.++... .....|.+.+..|...+.- +.....+|++||||-..
T Consensus 130 ~~~~v~~~h~p~~~~~~~~~~~r~~~~~~l~~~l~~-----------~~~~~p~Il~GDFN~~~ 182 (285)
T 2o3h_A 130 DSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKG-----------LASRKPLVLCGDLNVAH 182 (285)
T ss_dssp SSCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHHH-----------HHTTSCEEEEEECSCCC
T ss_pred CCEEEEEEEcCCCCCcchhHHHHHHHHHHHHHHHHh-----------hccCCCEEEEEECCCCC
Confidence 4799999999876532 1123455544554433210 00124699999999654
No 22
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=96.41 E-value=0.0019 Score=62.23 Aligned_cols=36 Identities=25% Similarity=0.287 Sum_probs=24.0
Q ss_pred EEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006209 107 VTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (656)
Q Consensus 107 i~vgTWNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (656)
+.|.||||+|........|.+||.. ..||| |+|||+
T Consensus 2 l~v~t~Ni~~~~~~~~~~i~~~i~~-~~~DI--i~LQE~ 37 (259)
T 2jc5_A 2 LKIISANVNGIRSAYKKGFYEYIAA-SGADI--VCVQEL 37 (259)
T ss_dssp EEEEEEECSSHHHHHHTTHHHHHHH-TTCSE--EEEECC
T ss_pred cEEEEEeeccHHHHHHhHHHHHHHh-cCCCE--EEEEEe
Confidence 5689999998432211136777743 35787 788999
No 23
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=96.25 E-value=0.0063 Score=62.03 Aligned_cols=37 Identities=32% Similarity=0.571 Sum_probs=24.1
Q ss_pred EEEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006209 106 RVTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (656)
Q Consensus 106 ri~vgTWNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (656)
.+.|.||||+|........|..||.. ..||| |+|||+
T Consensus 61 ~lrv~t~Nv~g~~~~~~~~i~~~i~~-~~~DI--i~LQE~ 97 (318)
T 1hd7_A 61 TLKICSWNVDGLRAWIKKKGLDWVKE-EAPDI--LCLQET 97 (318)
T ss_dssp CEEEEEEECSSHHHHHHTTHHHHHHH-HCCSE--EEEECC
T ss_pred ceEEEEEecCcchhhhhhhHHHHHHh-hCCCE--EEEEEc
Confidence 47789999998532211236666643 34686 789998
No 24
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.19 E-value=0.0011 Score=76.16 Aligned_cols=62 Identities=13% Similarity=0.053 Sum_probs=0.0
Q ss_pred cCeEEEeeccccCCCCCChhHHHHHhhHHHHHhhcC-cCCCCCCCCCCCCCCcceEEEeCccccc
Q 006209 433 FQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTR-FSSVFDTDQPQTIPSHDQIFWFGDLNYR 496 (656)
Q Consensus 433 ~~TsfcFVn~HLaAgek~g~~~rRN~D~~eIlrr~~-F~~~~~~~~p~~I~dhD~vfw~GDLNYR 496 (656)
.+..|+++|+||.+.... ...|-.....|++.+. +...........-.....||++||||--
T Consensus 545 ~g~~l~V~ntHL~~~p~~--~~~R~~Qa~~l~~~l~~~~~~~~~~~~~~~~~~~pvIl~GDFNs~ 607 (727)
T 4b8c_D 545 SGDTIWAVTTHLHWDPKF--NDVKTFQVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNSY 607 (727)
T ss_dssp -----------------------------------------------------------------
T ss_pred CCceEEEEEeccccCCCC--CchHHHHHHHHHHHHHHHHHHhcccccccccCCCceEEecccCCC
Confidence 367899999999886432 2335555555544322 1000000000000113469999999954
No 25
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=96.06 E-value=0.011 Score=64.96 Aligned_cols=35 Identities=14% Similarity=0.038 Sum_probs=22.2
Q ss_pred ccceeeecCCe-eEEeec-cCCCCCCCCcCcccEEEE
Q 006209 572 CDRILWLGKGI-KQLAYT-RAEILLSDHRPVSSTFLV 606 (656)
Q Consensus 572 CDRIL~~g~~i-~~l~Y~-s~e~~~SDHRPV~A~F~v 606 (656)
-|+||....-. +...+. ..+...|||.||.+.|.+
T Consensus 430 IDyIlvS~~l~~~v~~~~I~~~~~~SDH~PV~~~l~~ 466 (467)
T 2j63_A 430 LDYFVVSSRLASYVVDCFPMPTVMGSDHCPFQMWMRH 466 (467)
T ss_dssp CEEEEEEGGGGGGEEEEEECTTCCSSSBCCEEEEEEC
T ss_pred eEEEEEcHHHHcceeEEEECCCCCCCCcccEEEEEEc
Confidence 59999875321 122222 234579999999998753
No 26
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=95.98 E-value=0.01 Score=58.27 Aligned_cols=36 Identities=31% Similarity=0.587 Sum_probs=24.1
Q ss_pred EEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006209 107 VTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (656)
Q Consensus 107 i~vgTWNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (656)
+.|.||||+|........|..||.. ..||| |+|||+
T Consensus 4 l~i~s~Nv~g~~~~~~~~l~~~i~~-~~~DI--v~LQEt 39 (265)
T 3g91_A 4 LKIISWNVNGLRAVHRKGFLKWFME-EKPDI--LCLQEI 39 (265)
T ss_dssp EEEEEEECSCHHHHHHHTHHHHHHH-HCCSE--EEEECC
T ss_pred cEEEEEEcCCchhhhhhhHHHHHHh-cCCCE--EEEEec
Confidence 5678999999432222247788854 34686 788997
No 27
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=95.79 E-value=0.13 Score=49.50 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=28.4
Q ss_pred EEEeeccccCCCCCCh--hHHHHHhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCccccc
Q 006209 436 RLCLVCSHLTSGQKDG--AEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYR 496 (656)
Q Consensus 436 sfcFVn~HLaAgek~g--~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~vfw~GDLNYR 496 (656)
.|.++|+|++++...+ ....|.+-+.+|.+.+. .. +.....+|++||||-.
T Consensus 98 ~~~v~~~h~p~~~~~~~~~~~~r~~~~~~l~~~~~--~~--------~~~~~p~Il~GDFN~~ 150 (257)
T 2voa_A 98 GIDVINTYVPQGFKIDSEKYQYKLQWLERLYHYLQ--KT--------VDFRSFAVWCGDMNVA 150 (257)
T ss_dssp TEEEEEEECCCCSCTTSHHHHHHHHHHHHHHHHHH--HH--------CCTTSCEEEEEECSCC
T ss_pred CEEEEEEEeCCCCCCCcHHHHHHHHHHHHHHHHHH--HH--------hcCCCCEEEEeeCCCC
Confidence 7999999998875311 22334333334433211 00 0113469999999954
No 28
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=92.17 E-value=0.28 Score=48.46 Aligned_cols=36 Identities=25% Similarity=0.223 Sum_probs=25.6
Q ss_pred EEEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006209 106 RVTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (656)
Q Consensus 106 ri~vgTWNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (656)
.+.|.||||||..-..+. |.+||.. ..||| |++||+
T Consensus 7 ~mki~s~Nvn~~r~~~~~-l~~~l~~-~~~DI--l~LQEt 42 (240)
T 2ei9_A 7 RLRIGQINLGGAEDATRE-LPSIARD-LGLDI--VLVQEQ 42 (240)
T ss_dssp EEEEEEEECTTCHHHHHT-HHHHHHH-HTCSE--EEEESC
T ss_pred cceEEEEecCccHHHHHH-HHHHHHH-cCCCE--EEeecc
Confidence 377899999995433333 7888854 34587 778997
No 29
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=90.88 E-value=0.17 Score=49.62 Aligned_cols=61 Identities=10% Similarity=0.172 Sum_probs=35.6
Q ss_pred ceEEEEEEEEc---CeEEEeeccccCCCCCChhHHHHHhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCccccccc
Q 006209 423 KGSVSVSMTLF---QSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLN 498 (656)
Q Consensus 423 KGaVsVs~~l~---~TsfcFVn~HLaAgek~g~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~vfw~GDLNYRI~ 498 (656)
.+.+.+.|... +..|.+||+||.+... .++-+.+.+++..+. . ......+|++||||-.-.
T Consensus 111 R~p~~~~~~~~~~~g~~~~vi~~Hl~~~~~----~~q~~~l~~~~~~~~--~---------~~~~~~vil~GDfN~~~~ 174 (260)
T 2a40_B 111 REPAVVKFSSHSTKVKEFAIVALHSAPSDA----VAEINSLYDVYLDVQ--Q---------KWHLNDVMLMGDFNADCS 174 (260)
T ss_dssp SCCEEEEEECTTSSSSEEEEEECCCCGGGH----HHHHHHHHHHHHHHH--H---------HHCCCCEEEEEECCCSTT
T ss_pred eCCEEEEEEeCCCCCceEEEEEecCCCCCc----HHHHHHHHHHHHHHH--H---------hCCCCCEEEEecCCCCCc
Confidence 55667777765 5699999999997531 111222333332210 0 001246999999997544
No 30
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=90.82 E-value=0.035 Score=52.66 Aligned_cols=39 Identities=26% Similarity=0.384 Sum_probs=24.9
Q ss_pred eEEEEEeeeeCCCCCCCCCC----CcccccCCCCCCCEEEEeeeee
Q 006209 104 DVRVTIGTWNVAGRQPYEDL----DIDDWLCTQEPADIYIFGFQEV 145 (656)
Q Consensus 104 ~~ri~vgTWNV~G~~p~~~l----dl~~WL~~~~~~DIYvlGfQEi 145 (656)
...+.|-||||+|....... -|.+||.. ..||| |+|||+
T Consensus 11 ~~~l~v~s~Ni~g~~~~~~~~r~~~i~~~i~~-~~pDI--i~LQEv 53 (256)
T 4fva_A 11 GFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKN-VNPDI--LFLQEV 53 (256)
T ss_dssp TCEEEEEEEECCTTCCTTHHHHHHHHHHHHHH-HCCSE--EEEEEE
T ss_pred CCEEEEEEEecCCCCCcCHHHHHHHHHHHHHH-cCCCE--EEEEec
Confidence 45788999999985432210 13455533 35795 899998
No 31
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=87.14 E-value=0.098 Score=48.39 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=23.2
Q ss_pred EEEEeeeeCCCCCCCCC----CCcccccCCCCCCCEEEEeeeee
Q 006209 106 RVTIGTWNVAGRQPYED----LDIDDWLCTQEPADIYIFGFQEV 145 (656)
Q Consensus 106 ri~vgTWNV~G~~p~~~----ldl~~WL~~~~~~DIYvlGfQEi 145 (656)
++.|-||||+|..+... ..|.+||.. ..||| |+|||+
T Consensus 3 ~l~v~t~Ni~g~~~~~~~~r~~~i~~~i~~-~~pDI--i~LQEv 43 (250)
T 4f1h_A 3 KLSIISWNVDGLDTLNLADRARGLCSYLAL-YTPDV--VFLQEL 43 (250)
T ss_dssp CEEEEEEECCTTCCTTHHHHHHHHHHHHHH-HCCSE--EEEEEE
T ss_pred eEEEEEEEeCCCCCcCHHHHHHHHHHHHHH-cCCCE--EEEEeC
Confidence 46778999998533211 114455533 35795 889998
No 32
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=84.26 E-value=0.2 Score=47.23 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=23.1
Q ss_pred ccceeeecCC--eeEEeec-----c--CCCCCCCCcCcccEEEE
Q 006209 572 CDRILWLGKG--IKQLAYT-----R--AEILLSDHRPVSSTFLV 606 (656)
Q Consensus 572 CDRIL~~g~~--i~~l~Y~-----s--~e~~~SDHRPV~A~F~v 606 (656)
-|+||+++.. +....+. . .....|||.||.|.|.+
T Consensus 211 iD~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~pv~a~~~i 254 (256)
T 4gz1_A 211 FDRIFFRAEEGHLIPQSLDLVGLEKLDCGRFPSDHWGLLCTLNV 254 (256)
T ss_dssp CEEEEEECC-CSEEEEEEEEECCSCCTTSSCSCSBCEEEEEEEE
T ss_pred EEEEEEECCccceeeeEEEEEeccccCCCCCCCccccEEEEEEE
Confidence 6999998642 3333332 2 12346999999999976
No 33
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=81.51 E-value=0.29 Score=51.49 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=26.2
Q ss_pred eeEEEEEeeeeCCCCCCCCC----CCcccccCCCCCCCEEEEeeeee
Q 006209 103 KDVRVTIGTWNVAGRQPYED----LDIDDWLCTQEPADIYIFGFQEV 145 (656)
Q Consensus 103 ~~~ri~vgTWNV~G~~p~~~----ldl~~WL~~~~~~DIYvlGfQEi 145 (656)
+..++.|-||||+|...... .-|.+||.. ..||| |+|||+
T Consensus 116 ~~~~lkVlSWNI~Gl~~~~~~~R~~~I~~~I~~-~~PDI--V~LQEv 159 (362)
T 4gew_A 116 KGFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKN-VNPDI--LFLQEV 159 (362)
T ss_dssp TTCEEEEEEEECCTTCCTTHHHHHHHHHHHHHH-HCCSE--EEEEEE
T ss_pred CCCeEEEEEEEeCCCCCcCHHHHHHHHHHHHHH-cCCCE--EEEEcC
Confidence 45678889999999532111 014567643 45696 899998
No 34
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=78.62 E-value=0.22 Score=49.25 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=35.3
Q ss_pred CCceEEEEEEEEcCeEEEeeccccCCCCCChhHHHHHhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCcccccc
Q 006209 421 GNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (656)
Q Consensus 421 GNKGaVsVs~~l~~TsfcFVn~HLaAgek~g~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~vfw~GDLNYRI 497 (656)
...|++.|.+.+ ..+.+||+|++.+... ..+.+.+..++..+. ...+|++||||---
T Consensus 76 ~~~~~~~i~i~~--~~i~i~svY~P~~~~~---~~~~~~l~~l~~~~~---------------~~~~Ii~GDfN~~~ 132 (240)
T 2ei9_A 76 SSTHITVVHIGG--WDLYMVSAYFQYSDPI---DPYLHRLGNILDRLR---------------GARVVICADTNAHS 132 (240)
T ss_dssp CCSSEEEEEETT--TTEEEEEEECCTTSCS---HHHHHHHHHHHHHTT---------------TSCEEEEEECCCCC
T ss_pred CCCCEEEEEEee--ccEEEEEEEcCCCCch---hHHHHHHHHHHHhcC---------------CCcEEEEEeccccc
Confidence 346777766543 5789999999998642 223333344432210 13699999999543
No 35
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=77.59 E-value=0.23 Score=47.51 Aligned_cols=37 Identities=16% Similarity=0.093 Sum_probs=23.9
Q ss_pred cccceeeecCCe-eEEeeccC-CCCCCCCcCcccEEEEE
Q 006209 571 WCDRILWLGKGI-KQLAYTRA-EILLSDHRPVSSTFLVQ 607 (656)
Q Consensus 571 WCDRIL~~g~~i-~~l~Y~s~-e~~~SDHRPV~A~F~v~ 607 (656)
--|+||..+.-. +...+.-. +...|||.||.+.|.+.
T Consensus 219 rID~i~~s~~~~~~~~~~~v~~~~~~SDH~pv~~~l~~~ 257 (259)
T 2jc5_A 219 RIDYQMVTPELAAKAVSAHVYKDEKFSDHAPLVVEYDYA 257 (259)
T ss_dssp CCEEEEECHHHHTTEEEEEECCSSCCSSBCCEEEEESCC
T ss_pred EEEEEEECHHHHhHHhheeecCCCCCCCcccEEEEEecc
Confidence 479999975311 12223222 57789999999988653
No 36
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=77.04 E-value=0.24 Score=47.70 Aligned_cols=35 Identities=17% Similarity=0.385 Sum_probs=22.5
Q ss_pred EEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006209 107 VTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (656)
Q Consensus 107 i~vgTWNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (656)
+.|.||||+|.... -..|.+||.. ..||| |||||+
T Consensus 1 lrv~t~Nv~~~~~~-~~~i~~~i~~-~~~Di--i~LQE~ 35 (268)
T 1ako_A 1 MKFVSFNINGLRAR-PHQLEAIVEK-HQPDV--IGLQET 35 (268)
T ss_dssp CEEEEEECSCGGGC-HHHHHHHHHH-HCCSE--EEEECC
T ss_pred CEEEEEehhHHHHH-HHHHHHHHHH-cCCCE--EEEEec
Confidence 35899999985321 1124555533 35685 899998
No 37
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=76.29 E-value=0.19 Score=49.10 Aligned_cols=35 Identities=17% Similarity=0.080 Sum_probs=22.0
Q ss_pred ccceeeecCCe-eEEeec-cCCCCCCCCcCcccEEEE
Q 006209 572 CDRILWLGKGI-KQLAYT-RAEILLSDHRPVSSTFLV 606 (656)
Q Consensus 572 CDRIL~~g~~i-~~l~Y~-s~e~~~SDHRPV~A~F~v 606 (656)
-|+||....-. ...... ......|||.||.+.|..
T Consensus 221 ID~il~s~~~~~~~~~~~i~~~~~~SDH~Pv~~~~~~ 257 (265)
T 3g91_A 221 LDYFFVNEEFKGKVKRSWILSDVMGSDHCPIGLEIEL 257 (265)
T ss_dssp CEEEEEEGGGGGGEEEEEECTTCCSSSBCCEEEEEEC
T ss_pred EEEEEECHHHHhhhcEEEEeCCCCCCCcceEEEEhhh
Confidence 69999876432 111111 124578999999998753
No 38
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=74.70 E-value=2.5 Score=45.52 Aligned_cols=74 Identities=12% Similarity=0.091 Sum_probs=41.8
Q ss_pred CeEEEeeccccCCCCCChhHHHHHhhHHHHHhhcC-cCCCCCCCCCC--CCCCcceEEEeCccccccccChHHHHHHHHc
Q 006209 434 QSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTR-FSSVFDTDQPQ--TIPSHDQIFWFGDLNYRLNMMDTEVRELVAQ 510 (656)
Q Consensus 434 ~TsfcFVn~HLaAgek~g~~~rRN~D~~eIlrr~~-F~~~~~~~~p~--~I~dhD~vfw~GDLNYRI~l~~~ev~~lI~~ 510 (656)
+..||++|+||..+... ...|..++..|++.+. |........+. .-...-.||++||||-- +...+-+++..
T Consensus 194 ~~~l~V~nTHL~~~p~~--~~vRl~Q~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~PvIl~GDFNs~---P~s~vy~~L~~ 268 (398)
T 3ngq_A 194 KQLLIVANAHMHWDPEY--SDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSL---PDSGVVEYLSN 268 (398)
T ss_dssp CCEEEEEEEECCCCTTC--HHHHHHHHHHHHHHHHHHHCC-------------CCCEEEEEECSCC---TTSHHHHHHHH
T ss_pred CcEEEEEEeCcCCCCCC--HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCceEEEeeCCCC---CCCHHHHHHhc
Confidence 46799999999997543 3456677776665432 21100000000 00012369999999954 55667777766
Q ss_pred cC
Q 006209 511 KR 512 (656)
Q Consensus 511 ~~ 512 (656)
+.
T Consensus 269 G~ 270 (398)
T 3ngq_A 269 GG 270 (398)
T ss_dssp TE
T ss_pred CC
Confidence 53
No 39
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=71.45 E-value=0.42 Score=44.96 Aligned_cols=37 Identities=22% Similarity=0.373 Sum_probs=24.1
Q ss_pred EEEEeeeeCCCCCCCCC-CCcccccCCCCCCCEEEEeeeee
Q 006209 106 RVTIGTWNVAGRQPYED-LDIDDWLCTQEPADIYIFGFQEV 145 (656)
Q Consensus 106 ri~vgTWNV~G~~p~~~-ldl~~WL~~~~~~DIYvlGfQEi 145 (656)
.+.|.||||+|...... ..|.+||.. ..||| |+|||+
T Consensus 7 ~lri~t~Nv~g~~~~~~~~~~~~~i~~-~~~DI--v~LQE~ 44 (238)
T 1vyb_A 7 HITILTLNINGLNSAIKRHRLASWIKS-QDPSV--CCIQET 44 (238)
T ss_dssp CEEEEEEECSCCCSHHHHHHHHHHHHH-HCCSE--EEEECC
T ss_pred cceEEEEecccCCchhhHHHHHHHHHH-cCCCE--EEEecc
Confidence 36789999999543210 135566643 34686 889998
No 40
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=71.24 E-value=4.2 Score=41.63 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=35.5
Q ss_pred CceEEEEEEEEcCeEEEeeccccCCCCCChhHHHHHhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCccc
Q 006209 422 NKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLN 494 (656)
Q Consensus 422 NKGaVsVs~~l~~TsfcFVn~HLaAgek~g~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~vfw~GDLN 494 (656)
..|.+.|+ +.+ +.|++.||.+.... .|.+-+..|... |.... ..|. ..|...+++||||
T Consensus 121 ~R~~l~i~--i~g--~~f~s~Hl~~~~~~----ea~~~v~~I~~~--~~~~~--~~~~--~~~~~~ii~GDFN 179 (261)
T 1sr4_B 121 SRPAVGIR--IGT--DVFFTVHALATGGS----DAVSLIRNIFTT--FNSSS--SPPE--RRVYSWMVVGDFN 179 (261)
T ss_dssp CCCEEEEE--ETT--EEEEEEECCTTTTT----THHHHHHHHHHH--HHC-----CGG--GGGCEEEEEEECS
T ss_pred CcceEEEE--ECC--eEEEEeCCCCCCCc----hHHHHHHHHHHH--HHhcc--cCCc--ccCCcEEEEeeCC
Confidence 67888774 666 99999999997521 244445555542 21100 0010 0235799999999
No 41
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=69.72 E-value=0.54 Score=45.07 Aligned_cols=35 Identities=29% Similarity=0.383 Sum_probs=22.4
Q ss_pred EEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006209 107 VTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (656)
Q Consensus 107 i~vgTWNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (656)
+.|.||||+|..... ..|.+||.. ..||| |+|||+
T Consensus 2 lrv~t~Nv~g~~~~~-~~i~~~i~~-~~~Di--i~lQE~ 36 (257)
T 2voa_A 2 LKIATFNVNSIRSRL-HIVIPWLKE-NKPDI--LCMQET 36 (257)
T ss_dssp EEEEEEECSCGGGTH-HHHHHHHHH-HCCSE--EEEECC
T ss_pred eEEEEEecCChHHHH-HHHHHHHhh-cCCCE--EEEEEe
Confidence 568999999853221 124455532 35686 889999
No 42
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=68.53 E-value=0.42 Score=46.90 Aligned_cols=37 Identities=32% Similarity=0.593 Sum_probs=24.2
Q ss_pred EEEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006209 106 RVTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (656)
Q Consensus 106 ri~vgTWNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (656)
.+.|.||||+|........|..||.. ..||| |+|||+
T Consensus 28 ~l~v~t~Ni~~~~~~~~~~i~~~i~~-~~~DI--i~LQE~ 64 (285)
T 2o3h_A 28 TLKIASWNVDGLRAWIKKKGLDWVKE-EAPDI--LCLQET 64 (285)
T ss_dssp CEEEEEEECSSHHHHHHTTHHHHHHH-HCCSE--EEEECC
T ss_pred ceEEEEEecccChhhhhhhHHHHHHh-cCCCE--EEEEEe
Confidence 47789999998432211126666643 35685 889999
No 43
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=67.08 E-value=0.48 Score=48.02 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=30.8
Q ss_pred eEEEeeccccCCCCCC-hhHHHHHhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCcccccc
Q 006209 435 SRLCLVCSHLTSGQKD-GAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (656)
Q Consensus 435 TsfcFVn~HLaAgek~-g~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~vfw~GDLNYRI 497 (656)
..|.++|+||.++... .....|.+.+..|...+.- +.....+|++||||-..
T Consensus 163 ~~~~v~~vh~p~~~~~~~~~~~r~~~~~~l~~~l~~-----------~~~~~pvIl~GDFN~~~ 215 (318)
T 1hd7_A 163 DSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKG-----------LASRKPLVLCGDLNVAH 215 (318)
T ss_dssp SSCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHHH-----------HHHHSCEEEEEECSCCC
T ss_pred CCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHHh-----------cccCCCEEEEeeCCCCC
Confidence 4799999999876532 1123455555555443210 00124699999999654
No 44
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=63.11 E-value=3.1 Score=40.18 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=24.7
Q ss_pred cccceeeecCCeeEEeeccCCC----CCCCCcCcccEEEEE
Q 006209 571 WCDRILWLGKGIKQLAYTRAEI----LLSDHRPVSSTFLVQ 607 (656)
Q Consensus 571 WCDRIL~~g~~i~~l~Y~s~e~----~~SDHRPV~A~F~v~ 607 (656)
--|+||..+. ++...+..... ..|||.||.|.....
T Consensus 222 riD~I~~s~~-~~~~~~~v~~~~~~~~~SDH~PV~a~~~~~ 261 (267)
T 3g6s_A 222 KIDFIFVTPQ-VLVKSCEIPAEVPEALLSDHNPQLADLELE 261 (267)
T ss_dssp CCEEEEECTT-SEEEEEEECCCCSSSCCCSBCCEEEEEEEC
T ss_pred cEeEEEeCCC-ceEEEEEEecCCCCCCCCCcccEEEEEEec
Confidence 3699999863 56555554322 469999999876543
No 45
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=63.03 E-value=0.6 Score=51.24 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=24.3
Q ss_pred EEEEeeeeCCCCCCCC--C-CCcccccCCCCCCCEEEEeeeee
Q 006209 106 RVTIGTWNVAGRQPYE--D-LDIDDWLCTQEPADIYIFGFQEV 145 (656)
Q Consensus 106 ri~vgTWNV~G~~p~~--~-ldl~~WL~~~~~~DIYvlGfQEi 145 (656)
.+.|.||||+|..... . ..|.+||.. ..||| |+|||+
T Consensus 149 ~LKI~TwNVnGl~~~~kr~~~~i~~~I~~-~~pDI--VcLQEt 188 (467)
T 2j63_A 149 MYKFITWNVAGLRGLLKKNASALRAFMEA-EKPDV--LCLQET 188 (467)
T ss_dssp EEEEEEEECSCHHHHHHHCTTHHHHHHHH-HCCSE--EEEECC
T ss_pred CeEEEEEEcCCCcccccccHHHHHHHHHH-cCCCE--EEEEec
Confidence 4778999999942111 0 126777743 34686 889998
No 46
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=61.45 E-value=0.68 Score=44.13 Aligned_cols=34 Identities=32% Similarity=0.530 Sum_probs=21.9
Q ss_pred EEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006209 108 TIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (656)
Q Consensus 108 ~vgTWNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (656)
.|.||||+|....- ..|.++|.. ..||| |+|||+
T Consensus 2 rv~t~Nv~~~~~~~-~~i~~~i~~-~~~DI--v~LQE~ 35 (256)
T 2jc4_A 2 KITTWNVNSLNVRL-PQVQNLLAD-NPPDI--LVLQEL 35 (256)
T ss_dssp EEEEEECSCHHHHH-HHHHHHHHS-SCCSE--EEEECC
T ss_pred EEEEEEcCCcHHHH-HHHHHHHHh-cCCCE--EEEEee
Confidence 57899999842111 124556643 45787 789998
No 47
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=59.60 E-value=1.4 Score=42.26 Aligned_cols=35 Identities=23% Similarity=0.159 Sum_probs=25.4
Q ss_pred cccceeeecCCeeEEeeccC-----CCCCCCCcCcccEEEEE
Q 006209 571 WCDRILWLGKGIKQLAYTRA-----EILLSDHRPVSSTFLVQ 607 (656)
Q Consensus 571 WCDRIL~~g~~i~~l~Y~s~-----e~~~SDHRPV~A~F~v~ 607 (656)
--|+||. .+++...+... ....|||.||.+.|.+.
T Consensus 213 riD~i~~--~~~~~~~~~v~~~~~~~~~~SDH~pv~~~l~~~ 252 (257)
T 3l1w_A 213 EIDYIYV--KGWQVQQTASLTDSIDGRFPSDHFPLEAEVAGE 252 (257)
T ss_dssp CCEEEEE--ESEEEEEEEECCCCBTTBCSSSBCCEEEEEEEC
T ss_pred ceeEEEE--CCcEEEEEEEeccCcCCcccCCcceEEEEEEEE
Confidence 3599999 56666665532 23679999999998754
No 48
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=59.31 E-value=1.1 Score=42.93 Aligned_cols=35 Identities=17% Similarity=0.072 Sum_probs=23.1
Q ss_pred CcccceeeecCCeeEEeecc-----CCCCCCCCcCcccEEE
Q 006209 570 AWCDRILWLGKGIKQLAYTR-----AEILLSDHRPVSSTFL 605 (656)
Q Consensus 570 SWCDRIL~~g~~i~~l~Y~s-----~e~~~SDHRPV~A~F~ 605 (656)
.--|+||..+ ++....+.. .....|||.||.+.|.
T Consensus 226 ~riD~i~~s~-~~~~~~~~v~~~~~~~~~~SDH~Pv~~~l~ 265 (266)
T 3teb_A 226 KRLDYIFSNK-ELKVKESKVIFNNKNKEIVSDHFGIEVKIE 265 (266)
T ss_dssp ECCEEEEESS-CCCEEEEEEESSSSSSCCCSSSCEEEEEEC
T ss_pred CeeEEEEeCC-CeEEEEEEEEeCCCCCCCcCCccCEEEEEE
Confidence 3479999975 343333332 1256799999999875
No 49
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=58.23 E-value=0.8 Score=44.13 Aligned_cols=36 Identities=17% Similarity=0.004 Sum_probs=24.4
Q ss_pred EEEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006209 106 RVTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (656)
Q Consensus 106 ri~vgTWNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (656)
.+.|.||||+|.....+ .|..|+.. ..||| |++||+
T Consensus 19 ~lri~s~Nv~~~~~~~~-~l~~~i~~-~~~DI--v~lQE~ 54 (245)
T 1wdu_A 19 PYRVLQANLQRKKLATA-ELAIEAAT-RKAAI--ALIQEP 54 (245)
T ss_dssp CEEEEEEECTTCHHHHH-HHHHHHHH-HTCSE--EEEESC
T ss_pred ceeeeeeeccccHHHHH-HHHHHHhh-cCCCE--EEEEcc
Confidence 37789999998432111 36677744 45686 889998
No 50
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=57.35 E-value=7.2 Score=38.21 Aligned_cols=15 Identities=40% Similarity=0.437 Sum_probs=12.9
Q ss_pred CCCCCCcCcccEEEE
Q 006209 592 ILLSDHRPVSSTFLV 606 (656)
Q Consensus 592 ~~~SDHRPV~A~F~v 606 (656)
...|||.||.|.|.+
T Consensus 291 ~~~SDH~pv~a~l~~ 305 (306)
T 2ddr_A 291 NDYSDHYPVEATISM 305 (306)
T ss_dssp CCSCSSCCEEEEEEC
T ss_pred cCCCCCcceeEEEEe
Confidence 578999999999864
No 51
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=54.51 E-value=2.8 Score=43.01 Aligned_cols=61 Identities=11% Similarity=0.176 Sum_probs=38.1
Q ss_pred CceEEEEEEEEcCeEEEeeccccCCCCCChhHHHHHhhHHHHHhhcCcCCCCCCCCCCCCCCcceEEEeCcccccc
Q 006209 422 NKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (656)
Q Consensus 422 NKGaVsVs~~l~~TsfcFVn~HLaAgek~g~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~vfw~GDLNYRI 497 (656)
....++|++ + .+.|.+.|+.+.... .|.+.+..|... |.. .|..+...--.+++||||=.=
T Consensus 130 ~Rp~lgiri---~-~~~ff~tHa~a~~g~----da~a~v~~I~~~--~~~-----~~~~~~~~~pwii~GDFNr~P 190 (262)
T 2f1n_A 130 GRPLLGIRI---G-NDAFFTAHAIAMRNN----DAPALVEEVYNF--FRD-----SRDPVHQALNWMILGDFNREP 190 (262)
T ss_dssp CCCEEEEEE---T-TEEEEEEECCSSSSC----SHHHHHHHHHHH--HHT-----CSSHHHHTCEEEEEEECSSCH
T ss_pred CCceEEEEE---C-CEEEEEEEecCCCCc----cHHHHHHHHHHH--Hhc-----CcccccCCCcEEEEecCCCCC
Confidence 677777777 2 488999999997432 267778888764 211 111000012699999999543
No 52
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=51.37 E-value=4.9 Score=41.09 Aligned_cols=39 Identities=28% Similarity=0.524 Sum_probs=27.6
Q ss_pred EEEeeeeCCCCCCCCC-----CCcccccCCCCCCCEEEEeeeeeeeC
Q 006209 107 VTIGTWNVAGRQPYED-----LDIDDWLCTQEPADIYIFGFQEVVPL 148 (656)
Q Consensus 107 i~vgTWNV~G~~p~~~-----ldl~~WL~~~~~~DIYvlGfQEiV~L 148 (656)
+.|+|||+-| .++.+ ..+..||.....+|| |.+||+--+
T Consensus 5 ~kv~TwNi~g-~~~~~~~k~~~~i~~~i~~~~~~DI--laLQEa~~~ 48 (261)
T 1sr4_B 5 FKVATWNLQG-SSAVNESKWNINVRQLLSGEQGADI--LMVQEAGSL 48 (261)
T ss_dssp SCEEEEECCC-CSSSSHHHHHHHHHHHHCSTTCCSE--EEEESCCSC
T ss_pred cEEEEEEcCC-CCCCChhhhhhHHHHHHcCCCCCCE--EEEecCCCC
Confidence 3489999999 44433 136778866577898 667999555
No 53
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=51.07 E-value=2 Score=42.80 Aligned_cols=40 Identities=25% Similarity=0.385 Sum_probs=23.0
Q ss_pred eEEEEEeeeeCCCCCCCCCCCcccccC---------CCCCCCEEEEeeeee
Q 006209 104 DVRVTIGTWNVAGRQPYEDLDIDDWLC---------TQEPADIYIFGFQEV 145 (656)
Q Consensus 104 ~~ri~vgTWNV~G~~p~~~ldl~~WL~---------~~~~~DIYvlGfQEi 145 (656)
.-.|.|.||||....+........|-. ....||| |||||+
T Consensus 4 ~~~lrV~t~Ni~~~~~~~~~~~~~w~~r~~~i~~~i~~~~~DI--v~LQEv 52 (298)
T 3mpr_A 4 PTSLTVASYNLRNANGSDSARGDGWGQRYPVIAQMVQYHDFDI--FGTQEC 52 (298)
T ss_dssp CEEEEEEEEECCCCCHHHHHHTCCHHHHHHHHHHHHHHTTCSE--EEEESB
T ss_pred CCcEEEEEEEeccCCCCCcccccCHHHHHHHHHHHHHHcCCCE--EEEeCC
Confidence 346889999997644321100123411 1235785 899999
No 54
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=46.75 E-value=19 Score=36.89 Aligned_cols=38 Identities=21% Similarity=0.553 Sum_probs=25.0
Q ss_pred EEEEeeeeCCCCCCCCC----CCcccccCCCCCCCEEEEeeeee
Q 006209 106 RVTIGTWNVAGRQPYED----LDIDDWLCTQEPADIYIFGFQEV 145 (656)
Q Consensus 106 ri~vgTWNV~G~~p~~~----ldl~~WL~~~~~~DIYvlGfQEi 145 (656)
.+.|+|||+-|..+..+ .+|..-+....++|| +++||.
T Consensus 15 ~~kV~TwNiqgs~~~teskw~~~v~~lI~~~~~~DI--vaLQEa 56 (262)
T 2f1n_A 15 DFRVATWNLQGASATTESKWNINVRQLISGENAVDI--LAVQEA 56 (262)
T ss_dssp GCCEEEEEEEECTTSCHHHHHTHHHHHHSSTTCCSE--EEEEEE
T ss_pred eeEEEEEEcCCCCCCCcccccccHHHHHccCCCCCE--EEEeec
Confidence 46789999999654333 234443323455897 778999
No 55
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=46.29 E-value=8.8 Score=37.57 Aligned_cols=15 Identities=33% Similarity=0.157 Sum_probs=12.4
Q ss_pred CCCCCCcCcccEEEE
Q 006209 592 ILLSDHRPVSSTFLV 606 (656)
Q Consensus 592 ~~~SDHRPV~A~F~v 606 (656)
...|||.||.|.|.+
T Consensus 286 ~~~SDH~Pv~a~l~~ 300 (301)
T 1zwx_A 286 QDFSDHYPVVGFTDN 300 (301)
T ss_dssp CCSSSSCCEEEEEC-
T ss_pred cCCCCCccEEEEEec
Confidence 478999999999864
No 56
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=34.58 E-value=5.1 Score=40.61 Aligned_cols=37 Identities=14% Similarity=-0.016 Sum_probs=22.0
Q ss_pred EEEEeeeeCCCCCCCCCCCccccc---------CCCCCCCEEEEeeeee
Q 006209 106 RVTIGTWNVAGRQPYEDLDIDDWL---------CTQEPADIYIFGFQEV 145 (656)
Q Consensus 106 ri~vgTWNV~G~~p~~~ldl~~WL---------~~~~~~DIYvlGfQEi 145 (656)
.|.|.||||.+..+..+.+ ..|- .....||| |||||+
T Consensus 29 ~lrV~T~Ni~~~~~~~~~~-~~~~~R~~~i~~~~~~~~pDI--v~LQEv 74 (317)
T 3i41_A 29 DLKLVSHNVYMLSTVLYPN-WGQYKRADLIGQSSYIKNNDV--VIFNEA 74 (317)
T ss_dssp CCCEEEEEEEECCTTTSTT-SCHHHHHHHHHHCSTTSSCSE--EEEEEE
T ss_pred ceEEEEEecccCccccCCC-ccHHHHHHHHHHHhhccCCCE--EEEEee
Confidence 5778999999953221110 1231 11246786 899999
Done!