BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006212
(656 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
pdb|2G76|B Chain B, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
Length = 335
Score = 274 bits (700), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 144/296 (48%), Positives = 194/296 (65%), Gaps = 3/296 (1%)
Query: 80 DDLNVQAVTPKPTILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRS 138
++L Q++ +L+S+ L IL+ G V +LS E L ++ C+ LIVRS
Sbjct: 16 ENLYFQSMANLRKVLISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRS 75
Query: 139 GTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALL 198
TKVT V AA KL+VVGRAG G+DNVDL+AAT G LV+N P N+++AAE ++
Sbjct: 76 ATKVTADVINAAE-KLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMI 134
Query: 199 ASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH 258
+AR + QA AS+K GKW R K++G L GKTL ++G G++G EVA R + GM I +
Sbjct: 135 MCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGY 194
Query: 259 DPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNV 318
DP + + + GV+ + ++ DFI++H PL P+T+ + ND TFA+ KKGVR+VN
Sbjct: 195 DPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNC 254
Query: 319 ARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTK 374
ARGG++DE AL+RAL SG A AALDVFTEEPP +D LV HENV PHLGASTK
Sbjct: 255 ARGGIVDEGALLRALQSGQCAGAALDVFTEEPP-RDRALVDHENVISCPHLGASTK 309
>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|1YGY|B Chain B, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|3DC2|A Chain A, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
pdb|3DC2|B Chain B, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
Length = 529
Score = 255 bits (652), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 193/549 (35%), Positives = 279/549 (50%), Gaps = 28/549 (5%)
Query: 91 PTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAA 150
P +L+++KL + +A L V + + L + + DAL+VRS T V V AA
Sbjct: 5 PVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAA 64
Query: 151 NGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADA 210
KLK+V RAGVG+DNVD+ AAT G LVVNAP +N +AAEH +ALL + +R + ADA
Sbjct: 65 P-KLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADA 123
Query: 211 SIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAV 270
S++ W RS + G + GKT+ V+G G++G VA+R G V+A+DPY +A +
Sbjct: 124 SLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQL 183
Query: 271 GVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALV 330
G+EL+S D LA ADFIS+H+P P T+ + + E AK K GV IVN ARGG++DE AL
Sbjct: 184 GIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALA 243
Query: 331 RALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKXXXXXXXXXXXXXXXX 390
A+ G V A LDVF E P DS L + V VTPHLGAST
Sbjct: 244 DAITGGHVRAAGLDVFATE-PCTDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRL 302
Query: 391 XLRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARD 450
L GE A+N + V E+AP++ L +KLG LA L SV++ A +
Sbjct: 303 ALAGEFVPDAVN--VGGGVVNEEVAPWLDLVRKLGVLAGVLSDELPVSLSVQVRGELAAE 360
Query: 451 PDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDSI 510
+ +LR +G+ + + VNA A ++G ++ E A SP
Sbjct: 361 ----EVEVLRLSALRGLFSAVIEDAVTFVNAPALAAERG--VTAEICKASESPN------ 408
Query: 511 QVQLSNVDSKFAAAVSENGEISIEGKVKFGIPHLT----RVGSFGVDASLEGNLILCRQV 566
S VD + AV +G + +G P L+ ++ D +G ++ V
Sbjct: 409 --HRSVVDVR---AVGADGSVVTVSGTLYG-PQLSQKIVQINGRHFDLRAQGINLIIHYV 462
Query: 567 DQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEE 626
D+PG +GK+G +LG VN+ + + + +D++ D I A++
Sbjct: 463 DRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAA--AVDA 520
Query: 627 YTLLHVSYS 635
Y L V S
Sbjct: 521 YKLEVVDLS 529
>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
pdb|3DDN|B Chain B, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
Length = 528
Score = 255 bits (651), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 193/549 (35%), Positives = 279/549 (50%), Gaps = 28/549 (5%)
Query: 91 PTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAA 150
P +L+++KL + +A L V + + L + + DAL+VRS T V V AA
Sbjct: 4 PVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAA 63
Query: 151 NGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADA 210
KLK+V RAGVG+DNVD+ AAT G LVVNAP +N +AAEH +ALL + +R + ADA
Sbjct: 64 P-KLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADA 122
Query: 211 SIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAV 270
S++ W RS + G + GKT+ V+G G++G VA+R G V+A+DPY +A +
Sbjct: 123 SLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQL 182
Query: 271 GVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALV 330
G+EL+S D LA ADFIS+H+P P T+ + + E AK K GV IVN ARGG++DE AL
Sbjct: 183 GIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALA 242
Query: 331 RALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKXXXXXXXXXXXXXXXX 390
A+ G V A LDVF E P DS L + V VTPHLGAST
Sbjct: 243 DAITGGHVRAAGLDVFATE-PCTDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRL 301
Query: 391 XLRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARD 450
L GE A+N + V E+AP++ L +KLG LA L SV++ A +
Sbjct: 302 ALAGEFVPDAVN--VGGGVVNEEVAPWLDLVRKLGVLAGVLSDELPVSLSVQVRGELAAE 359
Query: 451 PDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDSI 510
+ +LR +G+ + + VNA A ++G ++ E A SP
Sbjct: 360 ----EVEVLRLSALRGLFSAVIEDAVTFVNAPALAAERG--VTAEICKASESPN------ 407
Query: 511 QVQLSNVDSKFAAAVSENGEISIEGKVKFGIPHLT----RVGSFGVDASLEGNLILCRQV 566
S VD + AV +G + +G P L+ ++ D +G ++ V
Sbjct: 408 --HRSVVDVR---AVGADGSVVTVSGTLYG-PQLSQKIVQINGRHFDLRAQGINLIIHYV 461
Query: 567 DQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEE 626
D+PG +GK+G +LG VN+ + + + +D++ D I A++
Sbjct: 462 DRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAA--AVDA 519
Query: 627 YTLLHVSYS 635
Y L V S
Sbjct: 520 YKLEVVDLS 528
>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
pdb|1WWK|B Chain B, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
Length = 307
Score = 216 bits (550), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 120/283 (42%), Positives = 185/283 (65%), Gaps = 4/283 (1%)
Query: 93 ILVSEKLGEAGLAILRSFGNVECLYDLSPEA--LCEKISQCDALIVRSGTKVTRSVFEAA 150
+LV+ L E + +L+ G +E +Y+ P+ L E + +A+IVRS KVTR V E+A
Sbjct: 6 VLVAAPLHEKAIQVLKDAG-LEVIYEEYPDEDRLVELVKDVEAIIVRSKPKVTRRVIESA 64
Query: 151 NGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADA 210
KLKV+ RAGVG+DN+D++AA E G VVNAP A++ + AE + L+ S+AR ++ AD
Sbjct: 65 -PKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADR 123
Query: 211 SIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAV 270
++ G W + + +G+ L GKT+ ++GFG++G +VA+ A LGMN++ +DPY ++A+ V
Sbjct: 124 KMREGVWAKKEAMGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNEERAKEV 183
Query: 271 GVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALV 330
+ V + L +D +++H+PL +T + N+E MKK ++N +RG V+D ALV
Sbjct: 184 NGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALV 243
Query: 331 RALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGAST 373
+AL G +A A LDVF EEP KD L + +NV +TPH+GAST
Sbjct: 244 KALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGAST 286
>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii
Length = 313
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/284 (36%), Positives = 164/284 (57%), Gaps = 6/284 (2%)
Query: 94 LVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANG 152
L+++ + E + LR G V+ + ++S E L I D ++VRS TKVT+ V E
Sbjct: 9 LITDPIDEILIKTLREKGIQVDYMPEISKEELLNIIGNYDIIVVRSRTKVTKDVIEKGK- 67
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
KLK++ RAG+G+DN+D + A + VV AP A+T +A E I L+ + AR + + A
Sbjct: 68 KLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALA 127
Query: 213 KAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV 272
K+G + K G+ L GKT+ ++GFG++G++V A +GM V+A+D +KA +
Sbjct: 128 KSG--IFKKIEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKAEKINA 185
Query: 273 ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRA 332
+ VS ++ L +D ISLH+ ++ I + F MK V IVN +R ++ +AL+
Sbjct: 186 KAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDY 245
Query: 333 LDSGVVAQAALDVFTEEPPAKDS--KLVQHENVTVTPHLGASTK 374
+ G V A DVF EPP ++ +L++HE V VT H+GA TK
Sbjct: 246 IKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTK 289
>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|C Chain C, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|D Chain D, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|E Chain E, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|F Chain F, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBZ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
pdb|2DBZ|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
Length = 334
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 174/327 (53%), Gaps = 12/327 (3%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYD---LSPEALCEKISQCDALIVRSGTKVTRSV 146
KP + ++ ++ E G+ +L VE D + E L +K+ + DAL+ ++ + V
Sbjct: 2 KPKVFITREIPEVGIKMLEDEFEVEVWGDEKEIPREILLKKVKEVDALVTMLSERIDKEV 61
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
FE A KL++V VG DN+D++ AT+ G V N P T A A+ ALL + AR+V
Sbjct: 62 FENA-PKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVV 120
Query: 207 QADASIKAGKWLR-------SKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHD 259
+ D +++G+W + ++G + GKT+ ++G G++G +A+RAKG M ++ +
Sbjct: 121 KGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYS 180
Query: 260 PYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319
+ R + E + L +DF+ L +PL T + N+E MKK ++N+A
Sbjct: 181 RTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIA 240
Query: 320 RGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKXXXXX 379
RG V+D ALV+AL G +A A LDVF EE P + +L + +NV +TPH+G+++
Sbjct: 241 RGKVVDTNALVKALKEGWIAGAGLDVFEEE-PYYNEELFKLDNVVLTPHIGSASFGAREG 299
Query: 380 XXXXXXXXXXXXLRGELSATAINAPMV 406
RGE+ T +N ++
Sbjct: 300 MAELVAKNLIAFKRGEIPPTLVNREVI 326
>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer
Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain
From Brucella Melitensis
Length = 416
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 158/290 (54%), Gaps = 12/290 (4%)
Query: 93 ILVSEKLGEAGLAILRSFGNVECLY---DLSPEALCEKISQCDALIVRSGTKVTRSVFEA 149
+L+ E + + + +S G + L L + IS + +RS T++T +F A
Sbjct: 18 VLLLEGISQTAVEYFKSSGYTNVTHLPKALDKADLIKAISSAHIIGIRSRTQLTEEIFAA 77
Query: 150 ANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQAD 209
AN +L VG VG + V+L+AA + G V NAP +NT + AE I + + R +
Sbjct: 78 AN-RLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRS 136
Query: 210 ASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARA 269
S AG W ++ + GKTL ++G+G +GS+V A+ LGM V +D +DK +
Sbjct: 137 VSAHAGGWEKTAIGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDT---SDKLQY 193
Query: 270 VGVE-LVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEA 328
V+ S D+ L T+D +SLH+P + +TSK+ + KMKKG ++N ARG +D EA
Sbjct: 194 GNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEA 253
Query: 329 LVRALDSGVVAQAALDVFTEEPPAKDSK----LVQHENVTVTPHLGASTK 374
L + L G +A AA+DVF EP + + L ENV +TPH+G ST+
Sbjct: 254 LAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTE 303
>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41)
Length = 334
Score = 153 bits (386), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 103/327 (31%), Positives = 172/327 (52%), Gaps = 12/327 (3%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYD---LSPEALCEKISQCDALIVRSGTKVTRSV 146
KP + ++ ++ E G+ L VE D + E L +K+ + DAL+ ++ + V
Sbjct: 2 KPKVFITREIPEVGIKXLEDEFEVEVWGDEKEIPREILLKKVKEVDALVTXLSERIDKEV 61
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
FE A KL++V VG DN+D++ AT+ G V N P T A A+ ALL + AR+V
Sbjct: 62 FENA-PKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVV 120
Query: 207 QADASIKAGKWLR-------SKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHD 259
+ D +++G+W + ++G + GKT+ ++G G++G +A+RAKG ++ +
Sbjct: 121 KGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNXRILYYS 180
Query: 260 PYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319
+ R + E + L +DF+ L +PL T + N+E KK ++N+A
Sbjct: 181 RTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLXKKTAILINIA 240
Query: 320 RGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKXXXXX 379
RG V+D ALV+AL G +A A LDVF EE P + +L + +NV +TPH+G+++
Sbjct: 241 RGKVVDTNALVKALKEGWIAGAGLDVFEEE-PYYNEELFKLDNVVLTPHIGSASFGAREG 299
Query: 380 XXXXXXXXXXXXLRGELSATAINAPMV 406
RGE+ T +N ++
Sbjct: 300 XAELVAKNLIAFKRGEIPPTLVNREVI 326
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
Length = 333
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 93/324 (28%), Positives = 154/324 (47%), Gaps = 10/324 (3%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEA 149
+P + V K+ L L+ + +VE + S E L I + D +IV TK+TR V E
Sbjct: 2 RPKVGVLLKMKREALEELKKYADVEIILYPSGEELKGVIGRFDGIIVSPTTKITREVLEN 61
Query: 150 ANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQAD 209
A +LKV+ G DN+DL+ AT+ G V + A AE + L+ ++ R + AD
Sbjct: 62 AE-RLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYAD 120
Query: 210 ASIKAGKWLRSKYVGV------SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP 263
I+ G+W + SL GK + ++G G +G +ARR G+ + +
Sbjct: 121 KFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRK 180
Query: 264 ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323
+ + + + D+ L +D + L +PL T I N+E K+ +G +VN+ RG +
Sbjct: 181 VNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKL-EGKYLVNIGRGAL 239
Query: 324 IDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTV-TPHLGASTKXXXXXXXX 382
+DE+A+ A+ G + A DVF E+ P ++ +L ++E TV TPH
Sbjct: 240 VDEKAVTEAIKQGKLKGYATDVF-EKEPVREHELFKYEWETVLTPHYAGLALEAQEDVGF 298
Query: 383 XXXXXXXXXLRGELSATAINAPMV 406
LRGE+ +N ++
Sbjct: 299 RAVENLLKVLRGEVPEDLVNKEVL 322
>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
pdb|2P9G|B Chain B, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
Length = 410
Score = 139 bits (349), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 147/292 (50%), Gaps = 10/292 (3%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYD---LSPEALCEKISQCDALIVRSGTKVTRSV 146
K L+ E + + L LR+ G + L E L E I + +RS T +T V
Sbjct: 10 KIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDV 69
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
AA KL +G +G + VDL AA + G V NAP +NT + AE I L + R V
Sbjct: 70 INAAE-KLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVP 128
Query: 207 QADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK 266
+A+A G W + GK L ++G+G +G+++ A+ LGM V +D
Sbjct: 129 EANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL 188
Query: 267 ARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDE 326
A V+ +S L +D +SLH+P NP+T + + + MK G ++N +RG V+D
Sbjct: 189 GNATQVQHLS--DLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDI 246
Query: 327 EALVRALDSGVVAQAALDVFTEEPPAKD----SKLVQHENVTVTPHLGASTK 374
AL AL S +A AA+DVF EP S L + +NV +TPH+G ST+
Sbjct: 247 PALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQ 298
>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9C|B Chain B, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|A Chain A, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|B Chain B, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|C Chain C, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|D Chain D, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2PA3|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
Length = 410
Score = 139 bits (349), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 147/292 (50%), Gaps = 10/292 (3%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYD---LSPEALCEKISQCDALIVRSGTKVTRSV 146
K L+ E + + L LR+ G + L E L E I + +RS T +T V
Sbjct: 10 KIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDV 69
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
AA KL +G +G + VDL AA + G V NAP +NT + AE I L + R V
Sbjct: 70 INAAE-KLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVP 128
Query: 207 QADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK 266
+A+A G W + GK L ++G+G +G+++ A+ LGM V +D
Sbjct: 129 EANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL 188
Query: 267 ARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDE 326
A V+ +S L +D +SLH+P NP+T + + + MK G ++N +RG V+D
Sbjct: 189 GNATQVQHLS--DLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDI 246
Query: 327 EALVRALDSGVVAQAALDVFTEEPPAKD----SKLVQHENVTVTPHLGASTK 374
AL AL S +A AA+DVF EP S L + +NV +TPH+G ST+
Sbjct: 247 PALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQ 298
>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
pdb|1PSD|B Chain B, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
Length = 409
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 147/292 (50%), Gaps = 10/292 (3%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYD---LSPEALCEKISQCDALIVRSGTKVTRSV 146
K L+ E + + L LR+ G + L E L E I + +RS T +T V
Sbjct: 9 KIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDV 68
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
AA KL +G +G + VDL AA + G V NAP +NT + AE I L + R V
Sbjct: 69 INAAE-KLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVP 127
Query: 207 QADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK 266
+A+A G W + GK L ++G+G +G+++ A+ LGM V +D
Sbjct: 128 EANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL 187
Query: 267 ARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDE 326
A V+ +S L +D +SLH+P NP+T + + + MK G ++N +RG V+D
Sbjct: 188 GNATQVQHLS--DLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDI 245
Query: 327 EALVRALDSGVVAQAALDVFTEEPPAKD----SKLVQHENVTVTPHLGASTK 374
AL AL S +A AA+DVF EP S L + +NV +TPH+G ST+
Sbjct: 246 PALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQ 297
>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|B Chain B, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|C Chain C, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|D Chain D, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|E Chain E, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|F Chain F, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|G Chain G, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|H Chain H, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
Length = 336
Score = 135 bits (340), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 96/299 (32%), Positives = 152/299 (50%), Gaps = 22/299 (7%)
Query: 86 AVTPKPTI-LVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKI-SQCDALIVRSGTKVT 143
++ P+P + L+ + + IL+ V S + + EK+ ++ ++ +T
Sbjct: 1 SMHPRPLVALLDGRDCTVEMPILKDLATVAFCDAQSTQEIHEKVLNEAVGAMMYHTITLT 60
Query: 144 RSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMAR 203
R E L+V+ R G G DNVD++AA E G V N P A A+ I + ++ R
Sbjct: 61 REDLEKFKA-LRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYR 119
Query: 204 NVSQADASIKAG------KWLRSKYVGVSLV-GKTLAVMGFGKVGSEVARRAKGLGMNVI 256
+ +++ G + +R G + + G+TL ++GFG+ G VA RAK G +VI
Sbjct: 120 RNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVI 179
Query: 257 AHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRI 315
+DPY R++GV+ V + L +D +SLH LN + ND T +M++G +
Sbjct: 180 FYDPYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFL 239
Query: 316 VNVARGGVIDEEALVRALDSGVVAQAALDVFTEEP------PAKDSKLVQHENVTVTPH 368
VN ARGG++DE+AL +AL G + AALDV EP P KD+ N+ TPH
Sbjct: 240 VNAARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAP-----NLICTPH 293
>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In
Transcription Corepression And Golgi Membrane Fission
Length = 358
Score = 135 bits (340), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 94/297 (31%), Positives = 152/297 (51%), Gaps = 24/297 (8%)
Query: 89 PKPTI-LVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKI--SQCDALIVRSGTKVTRS 145
P+P + L+ + + IL+ V S + + EK+ AL+ + T +TR
Sbjct: 23 PRPLVALLDGRDXTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTIT-LTRE 81
Query: 146 VFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNV 205
E L+++ R G G DN+D+++A + G V N P A+ A+ + + ++ R
Sbjct: 82 DLEKFKA-LRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRT 140
Query: 206 SQADASIKAG------KWLRSKYVGVSLV-GKTLAVMGFGKVGSEVARRAKGLGMNVIAH 258
+ +++ G + +R G + + G+TL ++G G+VG VA RAK G NV+ +
Sbjct: 141 TWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFY 200
Query: 259 DPYAPADKARAVGVELVS-FDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVN 317
DPY RA+G++ VS L +D ++LH LN + ND T +M++G +VN
Sbjct: 201 DPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVN 260
Query: 318 VARGGVIDEEALVRALDSGVVAQAALDVFTEEP------PAKDSKLVQHENVTVTPH 368
ARGG++DE+AL +AL G + AALDV EP P KD+ N+ TPH
Sbjct: 261 TARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAP-----NLICTPH 312
>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK
PEPTIDE
pdb|2HU2|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND RRTGAPPAL
Peptide
Length = 358
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 94/297 (31%), Positives = 152/297 (51%), Gaps = 24/297 (8%)
Query: 89 PKPTI-LVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKI--SQCDALIVRSGTKVTRS 145
P+P + L+ + + IL+ V S + + EK+ AL+ + T +TR
Sbjct: 23 PRPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTIT-LTRE 81
Query: 146 VFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNV 205
E L+++ R G G DN+D+++A + G V N P A+ A+ + + ++ R
Sbjct: 82 DLEKFKA-LRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRT 140
Query: 206 SQADASIKAG------KWLRSKYVGVSLV-GKTLAVMGFGKVGSEVARRAKGLGMNVIAH 258
+ +++ G + +R G + + G+TL ++G G+VG VA RAK G NV+ +
Sbjct: 141 TWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFY 200
Query: 259 DPYAPADKARAVGVELVS-FDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVN 317
DPY RA+G++ VS L +D ++LH LN + ND T +M++G +VN
Sbjct: 201 DPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVN 260
Query: 318 VARGGVIDEEALVRALDSGVVAQAALDVFTEEP------PAKDSKLVQHENVTVTPH 368
ARGG++DE+AL +AL G + AALDV EP P KD+ N+ TPH
Sbjct: 261 TARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAP-----NLICTPH 312
>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form
Length = 347
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 125/229 (54%), Gaps = 19/229 (8%)
Query: 154 LKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIK 213
L+++ R G G DN+D+++A + G V N P A+ A+ + + ++ R + +++
Sbjct: 86 LRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALR 145
Query: 214 AG------KWLRSKYVGVSLV-GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK 266
G + +R G + + G+TL ++G G+VG VA RAK G NV+ +DPY
Sbjct: 146 EGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGV 205
Query: 267 ARAVGVELVS-FDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVID 325
RA+G++ VS L +D ++LH LN + ND T +M++G +VN ARGG++D
Sbjct: 206 ERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVD 265
Query: 326 EEALVRALDSGVVAQAALDVFTEEP------PAKDSKLVQHENVTVTPH 368
E+AL +AL G + AALDV EP P KD+ N+ TPH
Sbjct: 266 EKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAP-----NLICTPH 309
>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
pdb|1GDH|B Chain B, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
Length = 320
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 141/291 (48%), Gaps = 9/291 (3%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYD---LSPEALCEKISQCDALIVRSGTKVTRSV 146
K IL++ L EA +A R +V D ++ + + E DAL++ K + V
Sbjct: 1 KKKILITWPLPEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEV 60
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
+ +K + +G D++DL A G V NAP TVA AE + LL AR
Sbjct: 61 IDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAG 120
Query: 207 QADASIKAGKWLRSK---YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY-- 261
+ + I+ W + VG L KTL + GFG +G +A+RA+G M++ D +
Sbjct: 121 EGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA 180
Query: 262 APADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARG 321
+ +D+A S D L+ + F SL+ P P T FN T + +G +VN ARG
Sbjct: 181 SSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARG 240
Query: 322 GVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGAS 372
++D E +V AL++G +A A DVF EP + N + PH+G++
Sbjct: 241 DLVDNELVVAALEAGRLAYAGFDVFAGEPNINEG-YYDLPNTFLFPHIGSA 290
>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H)
Binding And Dimerization
Length = 358
Score = 132 bits (331), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 151/297 (50%), Gaps = 24/297 (8%)
Query: 89 PKPTI-LVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKI--SQCDALIVRSGTKVTRS 145
P+P + L+ + + IL+ V S + + EK+ AL+ + T +TR
Sbjct: 23 PRPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTIT-LTRE 81
Query: 146 VFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNV 205
E L+++ R G G DN+D+++A + G V N P A+ A+ + + ++ R
Sbjct: 82 DLEKFKA-LRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRT 140
Query: 206 SQADASIKAG------KWLRSKYVGVSLV-GKTLAVMGFGKVGSEVARRAKGLGMNVIAH 258
+ +++ G + +R G + + G+TL ++G +VG VA RAK G NV+ +
Sbjct: 141 TWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLERVGQAVALRAKAFGFNVLFY 200
Query: 259 DPYAPADKARAVGVELVS-FDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVN 317
DPY RA+G++ VS L +D ++LH LN + ND T +M++G +VN
Sbjct: 201 DPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVN 260
Query: 318 VARGGVIDEEALVRALDSGVVAQAALDVFTEEP------PAKDSKLVQHENVTVTPH 368
ARGG++DE+AL +AL G + AALDV EP P KD+ N+ TPH
Sbjct: 261 TARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAP-----NLICTPH 312
>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|B Chain B, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|C Chain C, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|D Chain D, The Active Form Of Phosphoglycerate Dehydrogenase
Length = 410
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 144/292 (49%), Gaps = 10/292 (3%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYD---LSPEALCEKISQCDALIVRSGTKVTRSV 146
K L+ E + + L LR+ G + L E L E I + +RS T +T V
Sbjct: 10 KIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDV 69
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
AA KL +G +G + VDL AA + G V NAP +NT + AE I L + R V
Sbjct: 70 INAAE-KLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVP 128
Query: 207 QADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK 266
+A+A G W + GK L ++G+G +G+++ A+ LG V +D
Sbjct: 129 EANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYVYFYDIENKLPL 188
Query: 267 ARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDE 326
A V+ +S L +D +SLH+P NP+T + + K G ++N +RG V+D
Sbjct: 189 GNATQVQHLS--DLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDI 246
Query: 327 EALVRALDSGVVAQAALDVFTEEPPAKD----SKLVQHENVTVTPHLGASTK 374
AL AL S +A AA+DVF EP S L + +NV +TPH+G ST+
Sbjct: 247 PALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQ 298
>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|B Chain B, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|C Chain C, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|D Chain D, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2WWR|A Chain A, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|B Chain B, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|C Chain C, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|D Chain D, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
Length = 330
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 131/273 (47%), Gaps = 13/273 (4%)
Query: 142 VTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASM 201
V + + +AA LKV+ VGID++ L + G V P T AE ++LL +
Sbjct: 65 VDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTT 124
Query: 202 ARNVSQADASIKAGKWLRSK---YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH 258
R + +A +K G W K G L T+ ++G G++G +ARR K G+ +
Sbjct: 125 CRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLY 184
Query: 259 DPYAP-ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVN 317
P ++A E VS + A +DFI + L P T + N + F KMK+ +N
Sbjct: 185 TGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFIN 244
Query: 318 VARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKXXX 377
++RG V++++ L +AL SG +A A LDV + EP + L+ +N + PH+G++T
Sbjct: 245 ISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTR 304
Query: 378 XXXXXXXXXXXXXXLRGELSATAINAPMVPSEV 410
LRGE PM PSE+
Sbjct: 305 NTMSLLAANNLLAGLRGE--------PM-PSEL 328
>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|B Chain B, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|C Chain C, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|D Chain D, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
Length = 404
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 148/294 (50%), Gaps = 14/294 (4%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYD---LSPEALCEKISQCDALIVRSGTKVTRSV 146
K L+ E + + L LR+ G + L E L E I + +RS T +T V
Sbjct: 4 KIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDV 63
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
AA KL +G +G + VDL AA + G V NAP +NT + AE I L + R V
Sbjct: 64 INAAE-KLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVP 122
Query: 207 QADASIKAGKWLRSKYVGVSLV--GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA 264
+A+A KA + + +K S GK L ++G+G +G+++ A+ LG V +D
Sbjct: 123 EANA--KAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYVYFYDIENKL 180
Query: 265 DKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI 324
A V+ +S L +D +SLH+P NP+T + + K G ++N +RG V+
Sbjct: 181 PLGNATQVQHLS--DLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVV 238
Query: 325 DEEALVRALDSGVVAQAALDVFTEEPPAKD----SKLVQHENVTVTPHLGASTK 374
D AL AL S +A AA+DVF EP S L + +NV +TPH+G ST+
Sbjct: 239 DIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQ 292
>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
Length = 329
Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 128/266 (48%), Gaps = 10/266 (3%)
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
F A +L+V+G A G DN D+ A T G + P TV AE I L + R++
Sbjct: 61 FLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLR 120
Query: 207 QADASIKAGKW--LRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-P 263
ADA +++GK+ + ++ G L T+ +G G +G +A R +G G + H+ A
Sbjct: 121 AADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALD 180
Query: 264 ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323
+ +G+ V+ + A++DFI L +PLN T + N E A ++ G +VN RG V
Sbjct: 181 TQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSV 240
Query: 324 IDEEALVRALDSGVVAQAALDVFTEE-------PPAKDSKLVQHENVTVTPHLGASTKXX 376
+DE A++ AL+ G + A DVF E P D L+ H N TPH+G++ +
Sbjct: 241 VDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAV 300
Query: 377 XXXXXXXXXXXXXXXLRGELSATAIN 402
L GE A+N
Sbjct: 301 RLEIERCAAQNILQALAGERPINAVN 326
>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|E Chain E, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|F Chain F, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|G Chain G, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|H Chain H, Thermostable Phosphite Dehydrogenase In Complex With Nad
Length = 330
Score = 126 bits (316), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 128/266 (48%), Gaps = 10/266 (3%)
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
F A +L+V+G A G DN D+ A T G + P TV AE I L + R++
Sbjct: 61 FLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLR 120
Query: 207 QADASIKAGKW--LRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-P 263
ADA +++GK+ + ++ G L T+ +G G +G +A R +G G + H+ A
Sbjct: 121 AADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALD 180
Query: 264 ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323
+ +G+ V+ + A++DFI L +PLN T + N E A ++ G +VN RG V
Sbjct: 181 TQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSV 240
Query: 324 IDEEALVRALDSGVVAQAALDVFTEE-------PPAKDSKLVQHENVTVTPHLGASTKXX 376
+DE A++ AL+ G + A DVF E P D L+ H N TPH+G++ +
Sbjct: 241 VDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAV 300
Query: 377 XXXXXXXXXXXXXXXLRGELSATAIN 402
L GE A+N
Sbjct: 301 RLEIERCAAQNILQALAGERPINAVN 326
>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|B Chain B, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|C Chain C, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|D Chain D, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2Q50|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
Length = 328
Score = 125 bits (314), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 125/258 (48%), Gaps = 4/258 (1%)
Query: 142 VTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASM 201
V + + +AA LKV+ VGID++ L + G V P T AE ++LL +
Sbjct: 63 VDKRILDAAGANLKVISTXSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTT 122
Query: 202 ARNVSQADASIKAGKWLRSK---YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH 258
R + +A +K G W K G L T+ ++G G++G +ARR K G+ +
Sbjct: 123 CRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLY 182
Query: 259 DPYAP-ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVN 317
P ++A E VS + A +DFI + L P T + N + F K K+ +N
Sbjct: 183 TGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKXKETAVFIN 242
Query: 318 VARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKXXX 377
++RG V++++ L +AL SG +A A LDV + EP + L+ +N + PH+G++T
Sbjct: 243 ISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTR 302
Query: 378 XXXXXXXXXXXXXXLRGE 395
LRGE
Sbjct: 303 NTXSLLAANNLLAGLRGE 320
>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|B Chain B, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|C Chain C, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|D Chain D, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
Length = 352
Score = 125 bits (313), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 149/306 (48%), Gaps = 18/306 (5%)
Query: 124 LCEKISQCDALI-VRSGTKVTRSVFEAANGKLKVVGRAG-VGID---NVDLQAATEFGCL 178
L +++ +AL+ +R T+VTR + + KLK++ + G V D ++DL+A T+ G +
Sbjct: 42 LAARVADVEALVLIRERTRVTRQLLDRLP-KLKIISQTGRVSRDAGGHIDLEACTDKGVV 100
Query: 179 VVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKY----------VGVSLV 228
V+ + VA AE AL+ + R + Q AS+K G W +S +G L
Sbjct: 101 VLEGK-GSPVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLK 159
Query: 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFI 287
G+TL + G+GK+G VA + GMNV+ ++ARA G + S D +D +
Sbjct: 160 GQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVL 219
Query: 288 SLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFT 347
S+H+ LN T I +MK VN +R +++E +V AL+ G AA+DVF
Sbjct: 220 SVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFE 279
Query: 348 EEPPAKDSKLVQHENVTVTPHLGASTKXXXXXXXXXXXXXXXXXLRGELSATAINAPMVP 407
EP + L++ EN TPH+G + L+G + + A + P
Sbjct: 280 TEPILQGHTLLRMENCICTPHIGYVERESYEMYFGIAFQNILDILQGNVDSVANPTALAP 339
Query: 408 SEVLSE 413
+ + +E
Sbjct: 340 ALIRAE 345
>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
pdb|4E5M|B Chain B, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
Length = 329
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 127/266 (47%), Gaps = 10/266 (3%)
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
F A +L+V+G A G DN D+ A T G + P TV AE I L + R++
Sbjct: 61 FLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLR 120
Query: 207 QADASIKAGKW--LRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-P 263
ADA +++G++ + ++ G L T+ +G G +G +A R +G G + H A
Sbjct: 121 AADAFVRSGQFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHARKALD 180
Query: 264 ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323
+ +G+ V+ + A++DFI L +PLN T + N E A ++ G +VN RG V
Sbjct: 181 TQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSV 240
Query: 324 IDEEALVRALDSGVVAQAALDVFTEE-------PPAKDSKLVQHENVTVTPHLGASTKXX 376
+DE A++ AL+ G + A DVF E P D L+ H N TPH+G++ +
Sbjct: 241 VDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAV 300
Query: 377 XXXXXXXXXXXXXXXLRGELSATAIN 402
L GE A+N
Sbjct: 301 RLEIERCAAQNILQALAGERPINAVN 326
>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|B Chain B, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|C Chain C, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|D Chain D, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|E Chain E, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|F Chain F, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
Length = 332
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 127/266 (47%), Gaps = 10/266 (3%)
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
F A +L+V+G A G DN D+ A T G + P TV AE I L + R++
Sbjct: 61 FLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLR 120
Query: 207 QADASIKAGKW--LRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-P 263
ADA +++G++ + ++ G L T+ +G G +G +A R +G G + H A
Sbjct: 121 AADAFVRSGQFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHARKALD 180
Query: 264 ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323
+ +G+ V+ + A++DFI L +PLN T + N E A ++ G +VN RG V
Sbjct: 181 TQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSV 240
Query: 324 IDEEALVRALDSGVVAQAALDVFTEE-------PPAKDSKLVQHENVTVTPHLGASTKXX 376
+DE A++ AL+ G + A DVF E P D L+ H N TPH+G++ +
Sbjct: 241 VDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAV 300
Query: 377 XXXXXXXXXXXXXXXLRGELSATAIN 402
L GE A+N
Sbjct: 301 RLEIERCAAQNILQALAGERPINAVN 326
>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|B Chain B, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|C Chain C, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|D Chain D, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
Length = 345
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 127/259 (49%), Gaps = 4/259 (1%)
Query: 119 LSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCL 178
L+P + + + L V + +T V LK + VG D++D AA G
Sbjct: 60 LTPSGIASRAHGAEVLFVTATEAITAEVIRKLQPGLKTIATLSVGYDHIDXAAARSLGIK 119
Query: 179 VVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLR---SKYVGVSLVGKTLAVM 235
V++ P + A AE L+ + R +AD +++G W ++ +G L G+ L +
Sbjct: 120 VLHTPDVLSDACAEIAXLLVLNACRRGYEADRXVRSGSWPGWGPTQLLGXGLTGRRLGIF 179
Query: 236 GFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNP 295
G G++G +A RA+G G+ + H+ + + + D L +D + P P
Sbjct: 180 GXGRIGRAIATRARGFGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRP 239
Query: 296 TTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDS 355
+ + AK+ +G ++N++RG +I+++AL+ AL S + A LDVF E PA D
Sbjct: 240 ELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANE-PAIDP 298
Query: 356 KLVQHENVTVTPHLGASTK 374
+ +N+ +TPH+G++T
Sbjct: 299 RYRSLDNIFLTPHIGSATH 317
>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|B Chain B, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|C Chain C, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|D Chain D, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|E Chain E, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|F Chain F, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
Length = 334
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 126/266 (47%), Gaps = 10/266 (3%)
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
F A +L+V+G A G DN D+ A T G + P TV AE I L + R++
Sbjct: 62 FLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLR 121
Query: 207 QADASIKAGKW--LRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-P 263
ADA +++G++ + ++ G L T+ +G G +G A R +G G + H A
Sbjct: 122 AADAFVRSGQFRGWQPRFYGTGLDNATVGFLGXGAIGLAXADRLQGWGATLQYHAAKALD 181
Query: 264 ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323
+ +G+ V+ + A++DFI L +PLN T + N E A ++ G +VN RG V
Sbjct: 182 TQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSV 241
Query: 324 IDEEALVRALDSGVVAQAALDVFTEE-------PPAKDSKLVQHENVTVTPHLGASTKXX 376
+DE A++ AL+ G + A DVF E P D L+ H N TPH+G++ +
Sbjct: 242 VDEAAVLAALERGQLGGYAADVFEXEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAV 301
Query: 377 XXXXXXXXXXXXXXXLRGELSATAIN 402
L GE A+N
Sbjct: 302 RLEIERCAAQNILQALAGERPINAVN 327
>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J49|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 117/238 (49%), Gaps = 15/238 (6%)
Query: 149 AANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQA 208
A NG K+ R VG+DN+D+ A E G + N P+ + A AEH A + R
Sbjct: 67 ADNGITKMSLR-NVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAM 125
Query: 209 DASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKAR 268
D + + +G + + + V+G G +G + +G G VI +D + + +
Sbjct: 126 DEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEK 185
Query: 269 AVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEA 328
G + S D AD ISLH+P P + NDE+ AKMK+ V IVNV+RG ++D +A
Sbjct: 186 K-GYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDA 244
Query: 329 LVRALDSGVVAQAALDVFTEE-------------PPAKDSKLVQHENVTVTPHLGAST 373
++R LDSG + A+DV+ E P A+ + L+ NV VTPH T
Sbjct: 245 VIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPHTAFYT 302
>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
pdb|2DLD|B Chain B, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
Length = 337
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 129/270 (47%), Gaps = 18/270 (6%)
Query: 119 LSPEALCEKISQ-CDALIVRSGTKVTRSVFEA-ANGKLKVVGRAGVGIDNVDLQAATEFG 176
L+PE K+++ D ++V T +A A+ + + VG+DN+D+ A E G
Sbjct: 36 LTPE--TAKLAKGADGVVVYQQLDYTADTLQALADAGVTKMSLRNVGVDNIDMDKAKELG 93
Query: 177 CLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMG 236
+ N P+ + A AEH A + R + D + + +G + + + V+G
Sbjct: 94 FQITNVPVYSPNAIAEHAAIQAARVLRQDKRMDEKMAKRDLRWAPTIGREVRDQVVGVVG 153
Query: 237 FGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPT 296
G +G R +G G VIA+D + + + G + S D AD ISLH+P P
Sbjct: 154 TGHIGQVFMRIMEGFGAKVIAYDIFKNPELEKK-GYYVDSLDDLYKQADVISLHVPDVPA 212
Query: 297 TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEE------- 349
+ ND++ A+MK GV IVN +RG ++D +A++R LDSG + +D + +E
Sbjct: 213 NVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLDSGKIFGFVMDTYEDEVGVFNKD 272
Query: 350 ------PPAKDSKLVQHENVTVTPHLGAST 373
P + + L+ NV VTPH T
Sbjct: 273 WEGKEFPDKRLADLIDRPNVLVTPHTAFYT 302
>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
pdb|3NAQ|B Chain B, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
Length = 357
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 113/218 (51%), Gaps = 4/218 (1%)
Query: 160 AGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLR 219
AG+G D++DLQAA G V +N V+ AE + + + RN + G+W
Sbjct: 99 AGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNV 158
Query: 220 S--KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK-ARAVGVELV- 275
+ Y L GKT+ +G G++G + +R K G N++ HD A + + G + V
Sbjct: 159 AGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVE 218
Query: 276 SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335
++ L D I ++MPL T +FN E K+KKGV IVN ARG +++ +A+V A++S
Sbjct: 219 DLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVES 278
Query: 336 GVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGAST 373
G + + DV+ +P KD N +TPH +T
Sbjct: 279 GHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTT 316
>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|B Chain B, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|C Chain C, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|D Chain D, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|E Chain E, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|F Chain F, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|G Chain G, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|H Chain H, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|I Chain I, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|J Chain J, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|K Chain K, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|L Chain L, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3JTM|A Chain A, Structure Of Recombinant Formate Dehydrogenase From
Arabidopsis Thaliana
Length = 351
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 113/218 (51%), Gaps = 4/218 (1%)
Query: 160 AGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLR 219
AG+G D++DLQAA G V +N V+ AE + + + RN + G+W
Sbjct: 93 AGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNV 152
Query: 220 S--KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK-ARAVGVELV- 275
+ Y L GKT+ +G G++G + +R K G N++ HD A + + G + V
Sbjct: 153 AGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVE 212
Query: 276 SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335
++ L D I ++MPL T +FN E K+KKGV IVN ARG +++ +A+V A++S
Sbjct: 213 DLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVES 272
Query: 336 GVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGAST 373
G + + DV+ +P KD N +TPH +T
Sbjct: 273 GHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTT 310
>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|C Chain C, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|D Chain D, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 115 bits (287), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 116/238 (48%), Gaps = 15/238 (6%)
Query: 149 AANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQA 208
A NG K+ R VG+DN+D+ A E G + N P+ + A AEH A + R
Sbjct: 67 ADNGITKMSLR-NVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAM 125
Query: 209 DASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKAR 268
D + + +G + + + V+G G +G + +G G VI +D + + +
Sbjct: 126 DEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEK 185
Query: 269 AVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEA 328
G + S D AD ISLH+P P + NDE+ AKMK+ V IVNV+RG ++D +A
Sbjct: 186 K-GYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDA 244
Query: 329 LVRALDSGVVAQAALDVFTEE-------------PPAKDSKLVQHENVTVTPHLGAST 373
++R LDSG + A+DV+ E P A+ + L+ NV VTP T
Sbjct: 245 VIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYT 302
>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|B Chain B, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|C Chain C, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|D Chain D, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
Length = 334
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 125/272 (45%), Gaps = 17/272 (6%)
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
+LK++ VG D++DL + G LV + P + + AEH A + ++ + + + + +
Sbjct: 64 RLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRLKRIEDRV 123
Query: 213 KAGKWLR-SKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG 271
K + + S+ + L TL V+G G++GS VA G V+ +D D + G
Sbjct: 124 KKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAXYGLAFGXKVLCYDVVKRED-LKEKG 182
Query: 272 VELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVR 331
S D+ L +D ISLH+P T N+E + K GV ++N ARG V+D +AL R
Sbjct: 183 CVYTSLDELLKESDVISLHVPYTKETHHXINEERISLXKDGVYLINTARGKVVDTDALYR 242
Query: 332 ALDSGVVAQAALDVFTEEP------------PAKDSKLVQ---HENVTVTPHLGASTKXX 376
A G + LDVF +E K+ K+++ +NV +TPH+ T
Sbjct: 243 AYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVIITPHIAYYTDKS 302
Query: 377 XXXXXXXXXXXXXXXLRGELSATAINAPMVPS 408
++G+L N + PS
Sbjct: 303 LERIREETVKVVKAFVKGDLEQIKGNFVVGPS 334
>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|B Chain B, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|C Chain C, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|D Chain D, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
Length = 311
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 102/288 (35%), Positives = 149/288 (51%), Gaps = 13/288 (4%)
Query: 93 ILVSEKLGEAGLAILRSFG-NVECLYDLS-PEA-LCEKISQCDALIVRSGTKVTRSVFEA 149
+LV+ L L LR G VE L P+A L +++ LI ++ V +
Sbjct: 3 VLVTRTLPGKALDRLRERGLEVEVHRGLFLPKAELLKRVEGAVGLIPTVEDRIDAEVMDR 62
Query: 150 ANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQAD 209
A G LKV+ VG+D+VDL+AA E G V + P T A A+ +ALL ++AR V +
Sbjct: 63 AKG-LKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGA 121
Query: 210 ASIKAG---KWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK 266
A + G W +G+ L G TL ++G G++G VA+RA GM V+ H A
Sbjct: 122 AYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYH-----ART 176
Query: 267 ARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDE 326
+ + +S ++ L AD +SLH PL P T ++ N E MK+G ++N ARG ++D
Sbjct: 177 PKPLPYPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDT 236
Query: 327 EALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTK 374
EALV AL G + A LDV EP L N +TPH+G++ +
Sbjct: 237 EALVEAL-RGHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGR 283
>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 121/228 (53%), Gaps = 13/228 (5%)
Query: 154 LKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIK 213
LKV AG G D +DL A E G N+ A A ++ + L+ S+ R S ++ + +
Sbjct: 81 LKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAAR 140
Query: 214 AGKWLRSKYVGVSL-------VGKTLAVMGFGKVGSEVARRA-KGLGMNVIAHDPYAPAD 265
G V + + G L +G G + E+AR+A GLGM ++ +D APAD
Sbjct: 141 TGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYD-VAPAD 199
Query: 266 --KARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGG 322
+A+G E V S ++ +D +S+ +P T + ++ FA MK G RIVN ARG
Sbjct: 200 AETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGP 259
Query: 323 VIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLG 370
VI ++AL+ AL SG + A LDV EP +L++ ++VT+T H+G
Sbjct: 260 VISQDALIAALKSGKLLSAGLDVHEFEPQVS-KELIEMKHVTLTTHIG 306
>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a.
pdb|2W2L|A Chain A, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|B Chain B, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|C Chain C, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 121/228 (53%), Gaps = 13/228 (5%)
Query: 154 LKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIK 213
LKV AG G D +DL A E G N+ A A ++ + L+ S+ R S ++ + +
Sbjct: 81 LKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAAR 140
Query: 214 AGKWLRSKYVGVSL-------VGKTLAVMGFGKVGSEVARRA-KGLGMNVIAHDPYAPAD 265
G V + + G L +G G + E+AR+A GLGM ++ +D APAD
Sbjct: 141 TGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYD-VAPAD 199
Query: 266 --KARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGG 322
+A+G E V S ++ +D +S+ +P T + ++ FA MK G RIVN ARG
Sbjct: 200 AETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGP 259
Query: 323 VIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLG 370
VI ++AL+ AL SG + A LDV EP +L++ ++VT+T H+G
Sbjct: 260 VISQDALIAALKSGKLLSAGLDVHEFEPQVS-KELIEMKHVTLTTHIG 306
>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase
Length = 333
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 123/269 (45%), Gaps = 19/269 (7%)
Query: 122 EALCEKISQCDALIVRSGTKVTRSVFEAANGK-LKVVGRAGVGIDNVDLQAATEFGCLVV 180
E E D + T VFE + +K + VG DN+D+ A ++G +
Sbjct: 36 ENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLS 95
Query: 181 NAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS-KYVGVSLVGKTLAVMGFGK 239
N P + A AE + + RN+ + A ++AG + ++ ++G L +T+ VMG G
Sbjct: 96 NVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGH 155
Query: 240 VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSK 299
+G + KG G VIA+DPY K + VS + +D I LH+P +
Sbjct: 156 IGQVAIKLFKGFGAKVIAYDPYPM--KGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTH 213
Query: 300 IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEP--------- 350
I N+ F MK G ++N AR +ID +A++ L SG +A +D + E
Sbjct: 214 IINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKH 273
Query: 351 -----PAKDSKLVQHENVTVTPHLGASTK 374
P D +L+ NV ++PH+ T+
Sbjct: 274 GSFKDPLWD-ELLGMPNVVLSPHIAYYTE 301
>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a
Length = 348
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 121/228 (53%), Gaps = 13/228 (5%)
Query: 154 LKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIK 213
LKV AG G D +DL A E G N+ A A ++ + L+ S+ R S ++ + +
Sbjct: 81 LKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAAR 140
Query: 214 AGKWLRSKYVGVSL-------VGKTLAVMGFGKVGSEVARRA-KGLGMNVIAHDPYAPAD 265
G V + + G L +G G + E+AR+A GLGM ++ +D APAD
Sbjct: 141 TGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYD-VAPAD 199
Query: 266 --KARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGG 322
+A+G E V S ++ +D +S+ +P T + ++ FA MK G RIVN ARG
Sbjct: 200 AETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGP 259
Query: 323 VIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLG 370
VI ++AL+ AL SG + A LDV EP +L++ ++VT+T H+G
Sbjct: 260 VISQDALIAALKSGKLLSAGLDVHEFEPNVS-KELIEMKHVTLTTHIG 306
>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAC|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
Length = 393
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 110/224 (49%), Gaps = 4/224 (1%)
Query: 154 LKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIK 213
LK+ AG+G D+VDLQ+A + V N+++ AEH + ++ S+ RN + +
Sbjct: 114 LKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWAR 173
Query: 214 AGKWLRSKYV--GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAV 270
G W + V L + + G++G V RR +++ D + P + +
Sbjct: 174 KGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKEL 233
Query: 271 GVEL-VSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEAL 329
+ + + D ++L+ PL+P T + NDET K+G IVN ARG + D +A+
Sbjct: 234 NLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAV 293
Query: 330 VRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGAST 373
RAL+SG +A A DV+ +P KD +TPH+ +T
Sbjct: 294 ARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTT 337
>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas
Sp.101
Length = 401
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 110/224 (49%), Gaps = 4/224 (1%)
Query: 154 LKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIK 213
LK+ AG+G D+VDLQ+A + V N+++ AEH + ++ S+ RN + +
Sbjct: 115 LKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWAR 174
Query: 214 AGKWLRSKYV--GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAV 270
G W + V L + + G++G V RR +++ D + P + +
Sbjct: 175 KGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKEL 234
Query: 271 GVEL-VSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEAL 329
+ + + D ++L+ PL+P T + NDET K+G IVN ARG + D +A+
Sbjct: 235 NLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAV 294
Query: 330 VRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGAST 373
RAL+SG +A A DV+ +P KD +TPH+ +T
Sbjct: 295 ARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTT 338
>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|B Chain B, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|C Chain C, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|D Chain D, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
Length = 401
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 110/224 (49%), Gaps = 4/224 (1%)
Query: 154 LKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIK 213
LK+ AG+G D+VDLQ+A + V N+++ AEH + ++ S+ RN + +
Sbjct: 115 LKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWAR 174
Query: 214 AGKWLRSKYV--GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAV 270
G W + V L + + G++G V RR +++ D + P + +
Sbjct: 175 KGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKEL 234
Query: 271 GVEL-VSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEAL 329
+ + + D ++L+ PL+P T + NDET K+G IVN ARG + D +A+
Sbjct: 235 NLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAV 294
Query: 330 VRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGAST 373
RAL+SG +A A DV+ +P KD +TPH+ +T
Sbjct: 295 ARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTT 338
>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blu
pdb|3BAZ|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blumei In Complex With Nadp+
Length = 333
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 7/223 (3%)
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
KL++V VG+D VDL E G V N P T A+ I L+ ++ R + + D +
Sbjct: 87 KLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYV 146
Query: 213 KAGKWLRSKY-VGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG 271
+ G W + + GK + ++G G++G VA RA+ + ++ + K
Sbjct: 147 RRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPI---SYFSRSKKPNTNY 203
Query: 272 VELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKM-KKGVRIVNVARGGVIDEEALV 330
S + + +D + + PL P T+ I N E + KGV ++N+ RG +DE LV
Sbjct: 204 TYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGV-LINIGRGPHVDEPELV 262
Query: 331 RALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGAST 373
AL G + A LDVF EP + KL ENV + PH+G+ T
Sbjct: 263 SALVEGRLGGAGLDVFEREPEVPE-KLFGLENVVLLPHVGSGT 304
>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Lactobacillus Plantarum
Length = 324
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 115/227 (50%), Gaps = 2/227 (0%)
Query: 144 RSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMAR 203
+++ +LK V G+D + L+A G +V N + A +E +A + S+ R
Sbjct: 52 KTILARPTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVR 111
Query: 204 NVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA- 262
A + + + +L G+ L + G G++G +A +A LGM+VI +
Sbjct: 112 GYHAAWLNQRGARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGH 171
Query: 263 PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGG 322
PAD V + ALATA+FI +PL PTT +F+ E F + K+ ++N+ RG
Sbjct: 172 PADHFHET-VAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGP 230
Query: 323 VIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHL 369
+D AL+ ALD ++ AALDV EP D L Q ++V +TPH+
Sbjct: 231 AVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHI 277
>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From
Bacterium Moraxella Sp.c-1 In Closed Conformation
Length = 401
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 112/228 (49%), Gaps = 10/228 (4%)
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
KLK+ AG+G D+VDLQAA + V N+ + AEH + ++ + RN +
Sbjct: 113 KLKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPSHDWA 172
Query: 213 KAGKWLRSKYVGVS--LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAV 270
+ G W + V S + G + + G++G V R M++ D + + AV
Sbjct: 173 RNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDRHRLPE---AV 229
Query: 271 GVEL-----VSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVID 325
EL + + D ++L+ PL+P T + NDET K+G +VN ARG + D
Sbjct: 230 EKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTARGKLCD 289
Query: 326 EEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGAST 373
+A+VRAL+SG +A A DV+ +P D + +TPH+ ++
Sbjct: 290 RDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNGMTPHISGTS 337
>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium
Moraxella Sp.c2 In Complex With Nad And Azide
Length = 402
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 112/228 (49%), Gaps = 10/228 (4%)
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
KLK+ AG+G D+VDLQAA + V N+ + AEH + ++ + RN +
Sbjct: 114 KLKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPSHDWA 173
Query: 213 KAGKWLRSKYVGVS--LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAV 270
+ G W + V S + G + + G++G V R M++ D + + AV
Sbjct: 174 RNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDRHRLPE---AV 230
Query: 271 GVEL-----VSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVID 325
EL + + D ++L+ PL+P T + NDET K+G +VN ARG + D
Sbjct: 231 EKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTARGKLCD 290
Query: 326 EEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGAST 373
+A+VRAL+SG +A A DV+ +P D + +TPH+ ++
Sbjct: 291 RDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNGMTPHISGTS 338
>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
pdb|2O4C|B Chain B, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
Length = 380
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 121/246 (49%), Gaps = 29/246 (11%)
Query: 128 ISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANT 187
+++ D L+VRS T+V+R+ A ++ VG +G D++DL E G +AP N
Sbjct: 35 LAEVDVLLVRSVTEVSRAAL--AGSPVRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNA 92
Query: 188 VAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARR 247
++ + L +MA + G L +T V+G G+VG +
Sbjct: 93 RGVVDYVLGCLLAMA------------------EVRGADLAERTYGVVGAGQVGGRLVEV 134
Query: 248 AKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPT----TSKIFND 303
+GLG V+ DP +AR E VS ++ LA AD ISLH PLN T + ++
Sbjct: 135 LRGLGWKVLVCDP---PRQAREPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDE 191
Query: 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENV 363
A ++ G +VN +RG V+D +AL R L+ G + ALDV+ EP A D +L +
Sbjct: 192 PRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQA-DPELAAR-CL 249
Query: 364 TVTPHL 369
TPH+
Sbjct: 250 IATPHI 255
>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ5|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
Length = 343
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 104/232 (44%), Gaps = 21/232 (9%)
Query: 154 LKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIK 213
+K +G VG + ++ ++ LV N P+ + A AE + + R + + +
Sbjct: 71 VKCIGLRIVGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMD 130
Query: 214 AGK---WLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHD-PYAPADKARA 269
W S + + T+ ++G G +GS VA +G VIA+D Y P +
Sbjct: 131 HDHDFTW-PSNLISNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEFEPF- 188
Query: 270 VGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEAL 329
+ FD L AD +SLH PL P+T + ++ +MKK ++N ARG ++D AL
Sbjct: 189 --LTYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGAL 246
Query: 330 VRALDSGVVAQAALDVFT-------------EEPPAKDSKLVQHENVTVTPH 368
++AL G +A A LD E P L + NV +TPH
Sbjct: 247 IKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPH 298
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium
Meliloti
Length = 340
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 112/237 (47%), Gaps = 36/237 (15%)
Query: 154 LKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIK 213
L ++ GVG D VDL A V P A+ GIAL ++ R V D ++
Sbjct: 94 LGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALXLAVLRRVGDGDRLVR 153
Query: 214 AGKWLRSKYV--GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNV-------------IAH 258
G+W + + G S GK + V+G G++G +A RA+ G +V IAH
Sbjct: 154 EGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGXSVRYWNRSTLSGVDWIAH 213
Query: 259 DPYAPADKARAVGVELVSFDQALATADFI--SLHMPLNPTTSKIFNDETFAKMKKGVRIV 316
+P D AR V V + AT + + SL L P +G+ +V
Sbjct: 214 Q--SPVDLARDSDVLAVCVAASAATQNIVDASLLQALGP---------------EGI-VV 255
Query: 317 NVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGAST 373
NVARG V+DE+AL+ AL SG +A A LDVF EP + S+ N + PH G++T
Sbjct: 256 NVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIR-SEFHTTPNTVLXPHQGSAT 311
>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
Length = 365
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 108/233 (46%), Gaps = 12/233 (5%)
Query: 153 KLKVVGRAGVGIDNVDLQAATEFG--CLVVNAPIANTVAAAEHGIALLASMARNVSQADA 210
KLK+V AGVG D++DL + G V+ +N V+ AEH + + + RN A
Sbjct: 85 KLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHE 144
Query: 211 SIKAGKWLRSKYV--GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA--PADK 266
I W + + GKT+A +G G++G V R + + Y P D
Sbjct: 145 QIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDA 204
Query: 267 ARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVID 325
VG V + ++ +A AD ++++ PL+ T + N E +K KKG +VN ARG +
Sbjct: 205 EEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICV 264
Query: 326 EEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENV-----TVTPHLGAST 373
E + AL+SG + DV+ +P KD N +TPH +T
Sbjct: 265 AEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTT 317
>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
Length = 364
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 108/233 (46%), Gaps = 12/233 (5%)
Query: 153 KLKVVGRAGVGIDNVDLQAATEFG--CLVVNAPIANTVAAAEHGIALLASMARNVSQADA 210
KLK+V AGVG D++DL + G V+ +N V+ AEH + + + RN A
Sbjct: 84 KLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHE 143
Query: 211 SIKAGKWLRSKYV--GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA--PADK 266
I W + + GKT+A +G G++G V R + + Y P D
Sbjct: 144 QIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDA 203
Query: 267 ARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVID 325
VG V + ++ +A AD ++++ PL+ T + N E +K KKG +VN ARG +
Sbjct: 204 EEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICV 263
Query: 326 EEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENV-----TVTPHLGAST 373
E + AL+SG + DV+ +P KD N +TPH +T
Sbjct: 264 AEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTT 316
>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|B Chain B, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|C Chain C, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|D Chain D, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|E Chain E, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|F Chain F, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|G Chain G, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|H Chain H, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
Length = 381
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 104/229 (45%), Gaps = 27/229 (11%)
Query: 126 EKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIA 185
E+++ DAL VRS TKV S+ + VG A G D+VD + G AP
Sbjct: 36 EELNHADALXVRSVTKVNESLLSGT--PINFVGTATAGTDHVDEAWLKQAGIGFSAAPGC 93
Query: 186 NTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVA 245
N +A E+ + L +A + G SL +T+ ++G G VGS +
Sbjct: 94 NAIAVVEYVFSALLXLA------------------ERDGFSLRDRTIGIVGVGNVGSRLQ 135
Query: 246 RRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPL---NPTTSKIFN 302
R + LG+ + DP AR + + D+ + AD ++ H PL P +
Sbjct: 136 TRLEALGIRTLLCDP---PRAARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLA 192
Query: 303 DETF-AKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEP 350
DET ++K G ++N RG V+D AL+ L++G LDV+ EP
Sbjct: 193 DETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEP 241
>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid
Dehydrogenase Family Protein From Aeromonas Salmonicida
Subsp. Salmonicida A449
Length = 324
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 85/181 (46%), Gaps = 8/181 (4%)
Query: 191 AEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKG 250
+E+ L S+ R + K W Y G L G+TL ++G G +G +A K
Sbjct: 104 SEYVFGHLLSLMRQLPLYREQQKQRLWQSHPYQG--LKGRTLLILGTGSIGQHIAHTGKH 161
Query: 251 LGMNVIAHDPYAPADKARA---VGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFA 307
GM V+ + + + RA +L + ++ LA AD I +P T +F F
Sbjct: 162 FGMKVLG---VSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFE 218
Query: 308 KMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTP 367
K G + NV RG I+E L+ AL +G + A LDVF +EP DS L N+ +TP
Sbjct: 219 HCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITP 278
Query: 368 H 368
H
Sbjct: 279 H 279
>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From
Acidaminococcus Fermentans
Length = 331
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 130/292 (44%), Gaps = 36/292 (12%)
Query: 108 RSFG-NVECLYD-LSPEALCEKISQCDALIVRSGTKVTRSVFEAANG-KLKVVGRAGVGI 164
+ FG +++C+ D L+ + E + DA+I+R + + +K + G
Sbjct: 21 KEFGYDIKCVPDYLNTKETAEMAAGFDAVILRGNCFANKQNLDIYKKLGVKYILTRTAGT 80
Query: 165 DNVDLQAATEFGCLVVNAPIANTVAAAE----HGIALLASMARNVSQ-ADASIKAGKWLR 219
D++D + A E G + P + A AE + LL A S+ A + K ++
Sbjct: 81 DHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMF 140
Query: 220 SKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVE----LV 275
SK V VG V+G G++G A+ G+G VI D + G+E V
Sbjct: 141 SKEVRNCTVG----VVGLGRIGRVAAQIFHGMGATVIGEDVF------EIKGIEDYCTQV 190
Query: 276 SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335
S D+ L +D I++H P + + KMK G +VN ARG ++D EA++ A++S
Sbjct: 191 SLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVES 250
Query: 336 GVVAQAALDVFTEEPP--AKD-----------SKLVQ-HENVTVTPHLGAST 373
G + DV E KD KLV + V +TPHLG+ T
Sbjct: 251 GKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYT 302
>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|B Chain B, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|C Chain C, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|D Chain D, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
Length = 365
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 4/163 (2%)
Query: 191 AEHGIALLASMARNVSQADASIKAGKWLRSKYVGVS---LVGKTLAVMGFGKVGSEVARR 247
AE G+ ++AR + AD + + G L S + G + ++GFG +G + R
Sbjct: 135 AEIGLGFALALARGIVDADIAFQEGTELWGGEGNASARLIAGSEIGIVGFGDLGKALRRV 194
Query: 248 AKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFA 307
G + DP+ P GVE S + L +DFI + + + E F+
Sbjct: 195 LSGFRARIRVFDPWLPRSXLEENGVEPASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFS 254
Query: 308 KMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEP 350
++G + ++R V+D +AL A+ SG + AA DV+ EEP
Sbjct: 255 SXRRGAAFILLSRADVVDFDALXAAVSSGHIV-AASDVYPEEP 296
>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
pdb|3GVX|B Chain B, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
Length = 290
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 9/218 (4%)
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
+ K + G+D++D+ E L NA A +++ AEH ALL + A+N+ + +
Sbjct: 49 RTKXIQAISAGVDHIDVNGIPENVVLCSNAG-AYSISVAEHAFALLLAHAKNILENNELX 107
Query: 213 KAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV 272
KAG + +S L GK L ++G+G +G VA AK G VIA Y + + V V
Sbjct: 108 KAGIFRQSP--TTLLYGKALGILGYGGIGRRVAHLAKAFGXRVIA---YTRSSVDQNVDV 162
Query: 273 ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRA 332
S +DF+ + +PL T N A +K + IVNVAR V+ + +
Sbjct: 163 ISESPADLFRQSDFVLIAIPLTDKTRGXVNSRLLANARKNLTIVNVARADVVSKPDXIGF 222
Query: 333 LDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLG 370
L DV+ EP ++ L N ++PH+
Sbjct: 223 LKERSDVWYLSDVWWNEPEITETNL---RNAILSPHVA 257
>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|B Chain B, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|C Chain C, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|D Chain D, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3PP8|A Chain A, 2.1 Angstrom Crystal Structure Of Putative Oxidoreductase
(Ycdw) From Salmonella Typhimurium
Length = 315
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 49/84 (58%)
Query: 291 MPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEP 350
+P T I N E ++ G ++N+ARG + E L+ ALDSG + A LDVF++EP
Sbjct: 201 LPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAXLDVFSQEP 260
Query: 351 PAKDSKLVQHENVTVTPHLGASTK 374
++S L +H V TPH+ A T+
Sbjct: 261 LPQESPLWRHPRVAXTPHIAAVTR 284
>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
pdb|1QP8|B Chain B, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
Length = 303
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 94/219 (42%), Gaps = 9/219 (4%)
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
+LK + G+D++ ++ + NA +N A AE +ALL + + + Q
Sbjct: 50 RLKFIQVVTAGLDHLPWESIPPHVTVAGNAG-SNADAVAEFALALLLAPYKRIIQYGEKX 108
Query: 213 KAGKWLRSKYVGVSLV-GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG 271
K G + R V + L+ G+ +AV+G G++G+ V + LG V R
Sbjct: 109 KRGDYGRD--VEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEGPWRFTN 166
Query: 272 VELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVR 331
S ++AL A +PLN T + + A + VNV R V+D + ++R
Sbjct: 167 ----SLEEALREARAAVCALPLNKHTRGLVKYQHLALXAEDAVFVNVGRAEVLDRDGVLR 222
Query: 332 ALDSGVVAQAALDVFT-EEPPAKDSKLVQHENVTVTPHL 369
L A DV+ AKD++ NV TP +
Sbjct: 223 ILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWV 261
>pdb|3N58|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Brucella Melitensis In Ternary Complex With Nad And
Adenosine, Orthorhombic Form
pdb|3N58|B Chain B, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Brucella Melitensis In Ternary Complex With Nad And
Adenosine, Orthorhombic Form
pdb|3N58|C Chain C, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Brucella Melitensis In Ternary Complex With Nad And
Adenosine, Orthorhombic Form
pdb|3N58|D Chain D, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Brucella Melitensis In Ternary Complex With Nad And
Adenosine, Orthorhombic Form
Length = 464
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 49/111 (44%), Gaps = 10/111 (9%)
Query: 225 VSLVGKTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAPADKARAVGVELVSFDQALA 282
V + GK V G+G VG A+ G G + V DP A +A G E+V+ D A +
Sbjct: 243 VMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPIC-ALQAAMDGFEVVTLDDAAS 301
Query: 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRAL 333
TAD + TT+ + T M+K + V G D E V AL
Sbjct: 302 TADIVV-------TTTGNKDVITIDHMRKMKDMCIVGNIGHFDNEIQVAAL 345
>pdb|1V8B|A Chain A, Crystal Structure Of A Hydrolase
pdb|1V8B|B Chain B, Crystal Structure Of A Hydrolase
pdb|1V8B|C Chain C, Crystal Structure Of A Hydrolase
pdb|1V8B|D Chain D, Crystal Structure Of A Hydrolase
Length = 479
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 10/107 (9%)
Query: 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAH--DPYAPADKARAVGVELVSFDQALATADF 286
GK + + G+G VG A KGLG V DP A +A G +V+ D+ + DF
Sbjct: 257 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDPIC-AIQAVMEGFNVVTLDEIVDKGDF 315
Query: 287 ISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRAL 333
+ N K+ E KMK + N+ G D+E V L
Sbjct: 316 F-ITCTGNVDVIKL---EHLLKMKNNAVVGNI---GHFDDEIQVNEL 355
>pdb|3AOE|E Chain E, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|F Chain F, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|C Chain C, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|D Chain D, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
Length = 419
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 220 SKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257
+K G+ L G + V G G+VG+ VA A+ LGM V+A
Sbjct: 209 AKRRGLDLRGARVVVQGLGQVGAAVALHAERLGMRVVA 246
>pdb|1LI4|A Chain A, Human S-Adenosylhomocysteine Hydrolase Complexed With
Neplanocin
Length = 432
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH--DPYAPADKARAVGVELVSFDQALA 282
V + GK V G+G VG A+ +G G VI DP A +A G E+ + D+A
Sbjct: 209 VMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP-INALQAAMEGYEVTTMDEACQ 267
Query: 283 TAD-FISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQ 340
+ F++ ++ I F +MK + N+ G D E V+ L+ V +
Sbjct: 268 EGNIFVTTTGCID-----IILGRHFEQMKDDAIVCNI---GHFDVEIDVKWLNENAVEK 318
>pdb|3NJ4|A Chain A, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
pdb|3NJ4|B Chain B, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
pdb|3NJ4|C Chain C, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
pdb|3NJ4|D Chain D, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
Length = 435
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH--DPYAPADKARAVGVELVSFDQALA 282
V + GK V G+G VG A+ +G G VI DP A +A G E+ + D+A
Sbjct: 212 VMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP-INALQAAMEGYEVTTMDEACQ 270
Query: 283 TAD-FISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQ 340
+ F++ ++ I F +MK + N+ G D E V+ L+ V +
Sbjct: 271 EGNIFVTTTGCID-----IILGRHFEQMKDDAIVCNI---GHFDVEIDVKWLNENAVEK 321
>pdb|1XWF|A Chain A, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|B Chain B, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|C Chain C, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|D Chain D, K185n Mutated S-adenosylhomocysteine Hydrolase
Length = 431
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 12/119 (10%)
Query: 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH--DPYAPADKARAVGVELVSFDQALA 282
V + GK V G+G VG A+ +G G VI DP A +A G E+ + D+A
Sbjct: 208 VMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPIN-ALQAAMEGYEVTTMDEACK 266
Query: 283 TAD-FISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQ 340
+ F++ I F +MK + N+ G D E V+ L+ V +
Sbjct: 267 EGNIFVT-----TTGCVDIILGRHFEQMKDDAIVCNI---GHFDVEIDVKWLNENAVEK 317
>pdb|1B3R|A Chain A, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|B Chain B, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|C Chain C, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|D Chain D, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1K0U|A Chain A, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|B Chain B, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|C Chain C, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|D Chain D, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|E Chain E, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|F Chain F, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|G Chain G, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|H Chain H, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1KY4|A Chain A, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|B Chain B, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|C Chain C, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|D Chain D, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|2H5L|A Chain A, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|B Chain B, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|C Chain C, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|D Chain D, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|E Chain E, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|F Chain F, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|G Chain G, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|H Chain H, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
Length = 431
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 12/119 (10%)
Query: 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH--DPYAPADKARAVGVELVSFDQALA 282
V + GK V G+G VG A+ +G G VI DP A +A G E+ + D+A
Sbjct: 208 VMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPIN-ALQAAMEGYEVTTMDEACK 266
Query: 283 TAD-FISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQ 340
+ F++ I F +MK + N+ G D E V+ L+ V +
Sbjct: 267 EGNIFVT-----TTGCVDIILGRHFEQMKDDAIVCNI---GHFDVEIDVKWLNENAVEK 317
>pdb|1BVU|A Chain A, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|B Chain B, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|C Chain C, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|D Chain D, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|E Chain E, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|F Chain F, Glutamate Dehydrogenase From Thermococcus Litoralis
Length = 418
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 220 SKYVGVSLVGKTLAVMGFGKVGSEVAR-RAKGLGMNVIA 257
+K +G+ L GKT+A+ G+G G +A+ ++ GM V+A
Sbjct: 202 AKALGMDLKGKTIAIQGYGNAGYYMAKIMSEEYGMKVVA 240
>pdb|3H9U|A Chain A, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|B Chain B, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|C Chain C, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|D Chain D, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
Length = 436
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 10/113 (8%)
Query: 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATA 284
V + GKT V G+G VG A +G G V+ + D A+ + + Q L
Sbjct: 207 VMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTE----VDPINALQAAMEGY-QVLLVE 261
Query: 285 DFI-SLHMPLNPT-TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335
D + H+ + T I E F +M+ + N+ G D E V L +
Sbjct: 262 DVVEEAHIFVTTTGNDDIITSEHFPRMRDDAIVCNI---GHFDTEIQVAWLKA 311
>pdb|1GPJ|A Chain A, Glutamyl-Trna Reductase From Methanopyrus Kandleri
Length = 404
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 98/231 (42%), Gaps = 26/231 (11%)
Query: 69 ETSELHVSKFQDDLNVQAVTPKPTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKI 128
E EL ++F+ D V+ + E G +G +L++ VE Y E++
Sbjct: 15 EVEELEKARFESDEAVRDIV--------ESFGLSGSVLLQTSNRVEV-YASGARDRAEEL 65
Query: 129 SQC--DALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIAN 186
D V+ G++ R +F A+G ++ VG + Q + +
Sbjct: 66 GDLIHDDAWVKRGSEAVRHLFRVASGLESMM----VGEQEILRQVKKAYDRAARLGTLDE 121
Query: 187 TVAAAEHGIALLASMARN---VSQADASI-KAGKWLRSKYVGVSLVGKTLAVMGFGKVGS 242
+ L AR +S+ SI A L + +G SL KT+ V+G G++G
Sbjct: 122 ALKIVFRRAINLGKRAREETRISEGAVSIGSAAVELAERELG-SLHDKTVLVVGAGEMGK 180
Query: 243 EVARR--AKGLGMNVIAHDPYAPA-DKARAVGVELVSFDQ---ALATADFI 287
VA+ +G+ ++A+ Y A + AR +G E V FD+ LA +D +
Sbjct: 181 TVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVV 231
>pdb|1V9L|A Chain A, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|B Chain B, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|C Chain C, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|D Chain D, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|E Chain E, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|F Chain F, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
Length = 421
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIA-HDPYAPADKARAVGVELVSFDQALATADFI 287
GKT+A+ G G VG A + +G VIA D A + + VEL+ ++ L +
Sbjct: 210 GKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALV 269
Query: 288 SL 289
L
Sbjct: 270 EL 271
>pdb|2Y93|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb)from Pandoraea Pnomenusa Strain
B-356.
pdb|2Y93|B Chain B, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb)from Pandoraea Pnomenusa Strain
B-356.
pdb|2Y99|A Chain A, Crystal Structure Of
Cis-Biphenyl-2,3-Dihydrodiol-2,3-Dehydrogenase
(Bphb)from Pandoraea Pnomenusa Strain B-356 Complex With
Co-Enzyme Nad
pdb|2Y99|B Chain B, Crystal Structure Of
Cis-Biphenyl-2,3-Dihydrodiol-2,3-Dehydrogenase
(Bphb)from Pandoraea Pnomenusa Strain B-356 Complex With
Co-Enzyme Nad
pdb|3ZV3|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb)from Pandoraea Pnomenusa Strain B-
356 In Intermediate State Of Substrate Binding Loop
pdb|3ZV3|B Chain B, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb)from Pandoraea Pnomenusa Strain B-
356 In Intermediate State Of Substrate Binding Loop
pdb|3ZV4|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 In Apo Form At 1.8 Angstrom
pdb|3ZV4|B Chain B, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 In Apo Form At 1.8 Angstrom
pdb|3ZV5|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 Complex With Co-Enzyme Nad And Product 2,3-
Dihydroxybiphenyl
pdb|3ZV5|B Chain B, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 Complex With Co-Enzyme Nad And Product 2,3-
Dihydroxybiphenyl
pdb|3ZV6|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 Complex With Co-Enzyme Nad And Product Analog 4,4'-
Dihydroxybiphenyl
pdb|3ZV6|B Chain B, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 Complex With Co-Enzyme Nad And Product Analog 4,4'-
Dihydroxybiphenyl
Length = 281
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 583 NVNVNFMSVGRTFRRNHGIMAIGVDEE-----PNQDSLKE---IGKVPAIEEYTLLHVSY 634
+V VN ++ G G ++G+ E+ P D LK IG++PA+EEYT +V +
Sbjct: 176 HVRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKSVLPIGRMPALEEYTGAYVFF 235
Query: 635 SVR 637
+ R
Sbjct: 236 ATR 238
>pdb|1D4F|A Chain A, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|B Chain B, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|C Chain C, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|D Chain D, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1KY5|A Chain A, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|B Chain B, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|C Chain C, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|D Chain D, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
Length = 431
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 12/119 (10%)
Query: 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAV--GVELVSFDQALA 282
V + GK V G+G VG A+ +G G VI + P + +A G E+ + D+A
Sbjct: 208 VMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITE-IEPINALQAAMEGYEVTTMDEACK 266
Query: 283 TAD-FISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQ 340
+ F++ I F +MK + N+ G D E V+ L+ V +
Sbjct: 267 EGNIFVT-----TTGCVDIILGRHFEQMKDDAIVCNI---GHFDVEIDVKWLNENAVEK 317
>pdb|3G1U|A Chain A, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|B Chain B, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|C Chain C, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|D Chain D, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
Length = 437
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 8/112 (7%)
Query: 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATA 284
V + GKT V G+G VG A + G V+ + D A+ + + AL
Sbjct: 208 VMIAGKTCCVCGYGDVGKGCAAALRAFGARVVVTE----VDPINALQASMEGYQVALVED 263
Query: 285 DFISLHMPLNPT-TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335
H+ + T I + F M+ + N+ G D E V L++
Sbjct: 264 VMADAHIFVTTTGNDDIITSDHFPHMRDDAIVCNI---GHFDTEIQVGWLEA 312
>pdb|1A7A|A Chain A, Structure Of Human Placental S-adenosylhomocysteine
Hydrolase: Determination Of A 30 Selenium Atom
Substructure From Data At A Single Wavelength
pdb|1A7A|B Chain B, Structure Of Human Placental S-adenosylhomocysteine
Hydrolase: Determination Of A 30 Selenium Atom
Substructure From Data At A Single Wavelength
Length = 432
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH--DPYAPADKARAVGVELVSFDQA 280
V + GK V G+G VG A+ +G G VI DP A +A G E+ + D+A
Sbjct: 209 VXIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPIN-ALQAAXEGYEVTTXDEA 265
>pdb|2RIR|A Chain A, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|B Chain B, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|C Chain C, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|D Chain D, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|E Chain E, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|F Chain F, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|G Chain G, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|H Chain H, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
Length = 300
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Query: 218 LRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSF 277
L ++ ++ G +AV+G G+ G +AR LG NV + A AR LV F
Sbjct: 146 LAIQHTDYTIHGSQVAVLGLGRTGXTIARTFAALGANVKV-GARSSAHLARITEXGLVPF 204
Query: 278 DQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319
+ + +N S I N + I+++A
Sbjct: 205 HTDELKEHVKDIDICINTIPSXILNQTVLSSXTPKTLILDLA 246
>pdb|2CZG|A Chain A, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase (Ph0318) From Pyrococcus Horikoshii
Ot3
pdb|2CZG|B Chain B, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase (Ph0318) From Pyrococcus Horikoshii
Ot3
pdb|2DWC|A Chain A, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase From Pyrococcus Horikoshii Ot3
Complexed With Adp
pdb|2DWC|B Chain B, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase From Pyrococcus Horikoshii Ot3
Complexed With Adp
Length = 433
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Query: 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADF--- 286
+ + ++G G++G E+A A+ LG+ V+A D YA A A+ V S+ + DF
Sbjct: 20 QKILLLGSGELGKEIAIEAQRLGVEVVAVDRYA---NAPAMQVAHRSYVGNMMDKDFLWS 76
Query: 287 -ISLHMP--LNPTTSKIFNDETFAKMKKGVRIVNVARGGVI 324
+ P + P I D F K G +V AR I
Sbjct: 77 VVEREKPDAIIPEIEAINLDALFEFEKDGYFVVPNARATWI 117
>pdb|3D4O|A Chain A, Crystal Structure Of Dipicolinate Synthase Subunit A
(Np_243269.1) From Bacillus Halodurans At 2.10 A
Resolution
pdb|3D4O|B Chain B, Crystal Structure Of Dipicolinate Synthase Subunit A
(Np_243269.1) From Bacillus Halodurans At 2.10 A
Resolution
pdb|3D4O|C Chain C, Crystal Structure Of Dipicolinate Synthase Subunit A
(Np_243269.1) From Bacillus Halodurans At 2.10 A
Resolution
pdb|3D4O|D Chain D, Crystal Structure Of Dipicolinate Synthase Subunit A
(Np_243269.1) From Bacillus Halodurans At 2.10 A
Resolution
Length = 293
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 221 KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNV 255
++ ++ G +AV+G G+VG VAR+ LG V
Sbjct: 147 QHTDFTIHGANVAVLGLGRVGXSVARKFAALGAKV 181
>pdb|1EYZ|A Chain A, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg And
Amppnp
pdb|1EYZ|B Chain B, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg And
Amppnp
pdb|1EZ1|A Chain A, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg, Amppnp,
And Gar
pdb|1EZ1|B Chain B, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg, Amppnp,
And Gar
Length = 392
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 234 VMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKAR-AVGVELVSFDQALATADFISLHMP 292
++G G++G EVA + LG+ VIA D YA A A +++ A + L P
Sbjct: 17 LLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVELEKP 76
Query: 293 --LNPTTSKIFNDETFAKMKKGVRIVNVAR 320
+ P I D ++G+ +V AR
Sbjct: 77 HYIVPEIEAIATDMLIQLEEEGLNVVPCAR 106
>pdb|1KJ8|A Chain A, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase In Complex With Mg-Atp And
Gar
pdb|1KJ8|B Chain B, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase In Complex With Mg-Atp And
Gar
pdb|1KJ9|A Chain A, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg-Atp
pdb|1KJ9|B Chain B, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg-Atp
pdb|1KJI|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Amppcp
pdb|1KJI|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Amppcp
pdb|1KJJ|A Chain A, Crystal Structure Of Glycniamide Ribonucleotide
Transformylase In Complex With Mg-Atp-Gamma-S
pdb|1KJJ|B Chain B, Crystal Structure Of Glycniamide Ribonucleotide
Transformylase In Complex With Mg-Atp-Gamma-S
pdb|1KJQ|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Adp
pdb|1KJQ|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Adp
Length = 391
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 234 VMGFGKVGSEVARRAKGLGMNVIAHDPYAPA 264
++G G++G EVA + LG+ VIA D YA A
Sbjct: 16 LLGSGELGKEVAIECQRLGVEVIAVDRYADA 46
>pdb|2QZ6|A Chain A, First Crystal Structure Of A Psychrophile Class C Beta-
Lactamase
Length = 358
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQ 279
+LV KT + GFG + V +KGLG+ ++A+ Y A++ +A L + DQ
Sbjct: 307 TLVNKTGSTGGFGAYVAYVP--SKGLGVVILANKNYPNAERVKAAHAILSAMDQ 358
>pdb|2VHV|A Chain A, Crystal Structure Of The D270a Mutant Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis In Complex
With Nadh.
pdb|2VHV|B Chain B, Crystal Structure Of The D270a Mutant Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis In Complex
With Nadh
Length = 377
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 25/161 (15%)
Query: 187 TVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKT-------LAVMGFGK 239
TV A+ + LLA M+ + A + A +R++ L+G + V+G G
Sbjct: 119 TVQTADGALPLLAPMSEVAGRLAAQVGAYHLMRTQGGRGVLMGGVPGVEPADVVVIGAGT 178
Query: 240 VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVS-----------FDQALATADFI- 287
G AR A G+G V D DK R + E + A+ AD +
Sbjct: 179 AGYNAARIANGMGATVTVLD--INIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVI 236
Query: 288 -SLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA--RGGVID 325
++ +P K+ ++ A MK G +V++A +GG +
Sbjct: 237 GAVLVP-GAKAPKLVSNSLVAHMKPGAVLVDIAINQGGCFE 276
>pdb|2VHW|A Chain A, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|B Chain B, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|C Chain C, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|D Chain D, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|E Chain E, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|F Chain F, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHX|A Chain A, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|B Chain B, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|C Chain C, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|D Chain D, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|E Chain E, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|F Chain F, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHY|A Chain A, Crystal Structure Of Apo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis
pdb|2VHY|B Chain B, Crystal Structure Of Apo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis
pdb|2VHZ|A Chain A, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Closed Conformation
pdb|2VHZ|B Chain B, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Closed Conformation
Length = 377
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 25/162 (15%)
Query: 186 NTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKT-------LAVMGFG 238
TV A+ + LLA M+ + A + A +R++ L+G + V+G G
Sbjct: 118 ETVQTADGALPLLAPMSEVAGRLAAQVGAYHLMRTQGGRGVLMGGVPGVEPADVVVIGAG 177
Query: 239 KVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVS-----------FDQALATADFI 287
G AR A G+G V D DK R + E + A+ AD +
Sbjct: 178 TAGYNAARIANGMGATVTVLD--INIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLV 235
Query: 288 --SLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA--RGGVID 325
++ +P K+ ++ A MK G +V++A +GG +
Sbjct: 236 IGAVLVP-GAKAPKLVSNSLVAHMKPGAVLVDIAIDQGGCFE 276
>pdb|2VOE|A Chain A, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|B Chain B, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|C Chain C, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|D Chain D, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|E Chain E, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|F Chain F, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOJ|A Chain A, Ternary Complex Of M. Tuberculosis Rv2780 With Nad And
Pyruvate
pdb|2VOJ|C Chain C, Ternary Complex Of M. Tuberculosis Rv2780 With Nad And
Pyruvate
pdb|2VOJ|E Chain E, Ternary Complex Of M. Tuberculosis Rv2780 With Nad And
Pyruvate
Length = 371
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 25/162 (15%)
Query: 186 NTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKT-------LAVMGFG 238
TV A+ + LLA M+ + A + A +R++ L+G + V+G G
Sbjct: 118 ETVQTADGALPLLAPMSEVAGRLAAQVGAYHLMRTQGGRGVLMGGVPGVEPADVVVIGAG 177
Query: 239 KVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVS-----------FDQALATADFI 287
G AR A G+G V D DK R + E + A+ AD +
Sbjct: 178 TAGYNAARIANGMGATVTVLD--INIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLV 235
Query: 288 --SLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA--RGGVID 325
++ +P K+ ++ A MK G +V++A +GG +
Sbjct: 236 IGAVLVP-GAKAPKLVSNSLVAHMKPGAVLVDIAIDQGGCFE 276
>pdb|2PV7|A Chain A, Crystal Structure Of Chorismate Mutase PREPHENATE
DEHYDROGENASE (Tyra) (1574749) From Haemophilus
Influenzae Rd At 2.00 A Resolution
pdb|2PV7|B Chain B, Crystal Structure Of Chorismate Mutase PREPHENATE
DEHYDROGENASE (Tyra) (1574749) From Haemophilus
Influenzae Rd At 2.00 A Resolution
Length = 298
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 15/77 (19%)
Query: 226 SLVGKTLAVMGFGKVGSEVAR--RAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALAT 283
S + K + V G+GK+G AR RA G ++++ + +A A+ LA
Sbjct: 19 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAES-------------ILAN 65
Query: 284 ADFISLHMPLNPTTSKI 300
AD + + +P+N T I
Sbjct: 66 ADVVIVSVPINLTLETI 82
>pdb|3D64|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Burkholderia Pseudomallei
pdb|3D64|B Chain B, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Burkholderia Pseudomallei
pdb|3GLQ|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Burkholderia Pseudomallei In Complex With 9-Beta-D-
Arabino-Furansyl-Adenine
pdb|3GLQ|B Chain B, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Burkholderia Pseudomallei In Complex With 9-Beta-D-
Arabino-Furansyl-Adenine
Length = 494
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH--DPYAPADKARAVGVELVSFDQALA 282
V + GK V G+G VG A+ +GLG V DP A +A G +V+ + A
Sbjct: 273 VMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPIC-ALQAAMEGYRVVTMEYAAD 331
Query: 283 TADFI 287
AD
Sbjct: 332 KADIF 336
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,553,454
Number of Sequences: 62578
Number of extensions: 632078
Number of successful extensions: 1981
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1768
Number of HSP's gapped (non-prelim): 119
length of query: 656
length of database: 14,973,337
effective HSP length: 105
effective length of query: 551
effective length of database: 8,402,647
effective search space: 4629858497
effective search space used: 4629858497
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)