Query 006212
Match_columns 656
No_of_seqs 494 out of 2927
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 20:00:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006212.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006212hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01327 PGDH D-3-phosphoglyc 100.0 2E-108 3E-113 927.3 60.4 522 92-632 1-525 (525)
2 PRK13581 D-3-phosphoglycerate 100.0 3E-107 6E-112 917.5 60.4 523 91-632 1-526 (526)
3 KOG0068 D-3-phosphoglycerate d 100.0 2.1E-87 4.6E-92 687.2 32.1 398 90-491 6-406 (406)
4 PRK11790 D-3-phosphoglycerate 100.0 2E-73 4.3E-78 623.7 43.1 392 89-630 9-408 (409)
5 COG0111 SerA Phosphoglycerate 100.0 1.2E-70 2.6E-75 583.2 33.7 316 89-408 2-320 (324)
6 PRK15409 bifunctional glyoxyla 100.0 6.1E-68 1.3E-72 564.0 36.9 312 90-403 2-320 (323)
7 COG1052 LdhA Lactate dehydroge 100.0 2.3E-66 4.9E-71 550.1 33.9 313 90-403 2-323 (324)
8 PRK08410 2-hydroxyacid dehydro 100.0 3.7E-65 8E-70 540.6 35.3 298 92-395 2-310 (311)
9 PRK13243 glyoxylate reductase; 100.0 1E-64 2.3E-69 541.9 37.1 312 90-403 2-323 (333)
10 PRK06487 glycerate dehydrogena 100.0 9.8E-64 2.1E-68 531.1 34.8 302 92-401 2-316 (317)
11 PLN02306 hydroxypyruvate reduc 100.0 3.4E-62 7.3E-67 529.8 36.6 314 88-402 13-354 (386)
12 PRK06932 glycerate dehydrogena 100.0 2.2E-62 4.8E-67 519.9 32.5 273 118-396 32-314 (314)
13 PLN02928 oxidoreductase family 100.0 1.9E-61 4.1E-66 519.1 36.2 308 87-399 15-342 (347)
14 PLN03139 formate dehydrogenase 100.0 7.3E-61 1.6E-65 518.1 33.4 295 102-397 66-369 (386)
15 PRK07574 formate dehydrogenase 100.0 1.3E-60 2.9E-65 516.3 33.3 295 105-400 62-365 (385)
16 PRK08605 D-lactate dehydrogena 100.0 3.7E-58 8.1E-63 491.4 33.0 312 89-402 2-332 (332)
17 PRK12480 D-lactate dehydrogena 100.0 5.1E-58 1.1E-62 489.5 32.0 308 91-402 2-330 (330)
18 PRK15438 erythronate-4-phospha 100.0 7.6E-55 1.7E-59 469.6 31.4 273 91-393 1-279 (378)
19 KOG0069 Glyoxylate/hydroxypyru 100.0 5E-55 1.1E-59 459.1 25.8 281 120-401 50-334 (336)
20 PRK00257 erythronate-4-phospha 100.0 6.6E-54 1.4E-58 463.6 32.2 284 91-402 1-288 (381)
21 PRK15469 ghrA bifunctional gly 100.0 1.6E-53 3.5E-58 451.4 29.4 267 128-403 36-308 (312)
22 PRK06436 glycerate dehydrogena 100.0 5.2E-53 1.1E-57 445.4 30.9 283 92-403 2-290 (303)
23 PF02826 2-Hacid_dh_C: D-isome 100.0 1.9E-44 4.2E-49 353.3 18.0 176 195-370 1-178 (178)
24 TIGR00719 sda_beta L-serine de 100.0 5.2E-38 1.1E-42 315.0 21.0 186 417-618 21-208 (208)
25 KOG0067 Transcription factor C 100.0 3.5E-30 7.7E-35 268.1 13.9 293 106-406 48-353 (435)
26 PRK06545 prephenate dehydrogen 99.9 6.6E-26 1.4E-30 245.5 8.3 325 230-619 1-351 (359)
27 PRK08818 prephenate dehydrogen 99.9 7.4E-22 1.6E-26 213.4 12.9 310 228-617 3-354 (370)
28 PF00389 2-Hacid_dh: D-isomer 99.9 4.7E-21 1E-25 178.9 15.8 101 93-194 1-101 (133)
29 PTZ00075 Adenosylhomocysteinas 99.8 3.5E-20 7.5E-25 204.1 18.1 175 153-352 190-367 (476)
30 TIGR02853 spore_dpaA dipicolin 99.8 9.3E-19 2E-23 184.1 13.5 150 141-320 81-241 (287)
31 PRK07417 arogenate dehydrogena 99.6 4.2E-16 9.2E-21 163.4 8.9 243 231-491 2-264 (279)
32 PRK08306 dipicolinate synthase 99.6 5.4E-14 1.2E-18 148.8 17.6 166 126-320 51-242 (296)
33 COG0287 TyrA Prephenate dehydr 99.6 5.5E-15 1.2E-19 154.6 9.6 226 229-474 3-249 (279)
34 PRK07502 cyclohexadienyl dehyd 99.6 8.1E-15 1.8E-19 155.6 10.2 252 229-495 6-279 (307)
35 PLN02494 adenosylhomocysteinas 99.5 2E-14 4.3E-19 158.5 11.5 121 224-349 249-373 (477)
36 PLN02256 arogenate dehydrogena 99.5 2.5E-14 5.4E-19 151.8 9.1 233 226-482 33-286 (304)
37 PRK08507 prephenate dehydrogen 99.5 2E-14 4.4E-19 150.3 7.7 237 231-490 2-261 (275)
38 PRK08655 prephenate dehydrogen 99.5 7.5E-14 1.6E-18 155.2 8.0 237 230-491 1-261 (437)
39 TIGR00936 ahcY adenosylhomocys 99.5 2.5E-13 5.3E-18 148.7 11.7 121 224-348 190-312 (406)
40 PRK13403 ketol-acid reductoiso 99.5 1.5E-13 3.2E-18 145.1 9.0 93 225-318 12-105 (335)
41 PLN02712 arogenate dehydrogena 99.4 6.8E-13 1.5E-17 154.2 10.8 238 223-482 363-619 (667)
42 PRK05476 S-adenosyl-L-homocyst 99.3 2.5E-11 5.4E-16 133.7 15.6 211 101-331 87-312 (425)
43 COG1760 SdaA L-serine deaminas 99.3 8.8E-15 1.9E-19 148.9 -11.4 196 419-633 55-255 (262)
44 PRK11199 tyrA bifunctional cho 99.3 1.1E-11 2.4E-16 135.4 9.7 226 228-494 97-343 (374)
45 PRK14806 bifunctional cyclohex 99.2 1.6E-11 3.4E-16 145.2 10.0 219 230-473 4-253 (735)
46 PF03446 NAD_binding_2: NAD bi 99.2 1.5E-11 3.3E-16 119.0 7.9 109 230-338 2-113 (163)
47 PF02153 PDH: Prephenate dehyd 99.2 1.1E-12 2.4E-17 136.2 -0.1 225 244-484 1-246 (258)
48 PF00670 AdoHcyase_NAD: S-aden 99.2 5E-11 1.1E-15 114.6 10.8 104 224-331 18-123 (162)
49 PLN02712 arogenate dehydrogena 99.2 1.8E-11 3.9E-16 142.4 9.2 239 227-483 50-303 (667)
50 COG2084 MmsB 3-hydroxyisobutyr 99.2 4E-11 8.7E-16 125.5 10.2 123 230-352 1-128 (286)
51 PRK11559 garR tartronate semia 99.1 1.3E-10 2.8E-15 122.7 9.8 121 230-350 3-127 (296)
52 TIGR01505 tartro_sem_red 2-hyd 99.1 2E-10 4.3E-15 121.1 9.7 108 231-338 1-112 (291)
53 PRK15461 NADH-dependent gamma- 99.0 6.5E-10 1.4E-14 117.8 9.6 110 230-339 2-115 (296)
54 cd00401 AdoHcyase S-adenosyl-L 99.0 1.3E-09 2.8E-14 120.0 11.4 103 224-330 197-301 (413)
55 PRK05479 ketol-acid reductoiso 99.0 6.7E-10 1.5E-14 118.8 8.8 95 225-321 13-109 (330)
56 PRK12490 6-phosphogluconate de 99.0 1.3E-09 2.8E-14 115.6 10.5 115 231-348 2-123 (299)
57 PRK09599 6-phosphogluconate de 98.9 4.4E-09 9.6E-14 111.6 10.9 108 231-339 2-114 (301)
58 PRK15059 tartronate semialdehy 98.9 3.7E-09 8E-14 111.9 9.7 108 231-338 2-112 (292)
59 PLN02350 phosphogluconate dehy 98.9 5.2E-09 1.1E-13 117.7 10.0 121 231-352 8-140 (493)
60 cd04902 ACT_3PGDH-xct C-termin 98.8 1.2E-08 2.7E-13 84.4 8.4 72 561-632 2-73 (73)
61 TIGR00465 ilvC ketol-acid redu 98.8 1E-08 2.2E-13 109.6 9.4 94 227-322 1-96 (314)
62 PF07991 IlvN: Acetohydroxy ac 98.8 6.6E-09 1.4E-13 99.7 5.9 93 227-321 2-96 (165)
63 TIGR00872 gnd_rel 6-phosphoglu 98.8 2.8E-08 6E-13 105.5 10.6 118 230-349 1-123 (298)
64 PRK05225 ketol-acid reductoiso 98.8 8.5E-09 1.8E-13 113.1 6.6 103 216-321 21-132 (487)
65 PRK08293 3-hydroxybutyryl-CoA 98.8 1.6E-07 3.5E-12 99.0 15.7 174 230-424 4-206 (287)
66 KOG0409 Predicted dehydrogenas 98.8 2.3E-08 4.9E-13 103.9 8.7 112 227-338 33-149 (327)
67 PLN02545 3-hydroxybutyryl-CoA 98.8 1.2E-07 2.7E-12 100.2 14.5 106 230-338 5-137 (295)
68 PRK07066 3-hydroxybutyryl-CoA 98.7 1.3E-07 2.8E-12 101.3 14.7 174 230-424 8-205 (321)
69 TIGR01692 HIBADH 3-hydroxyisob 98.7 2E-08 4.4E-13 105.9 8.5 105 234-338 1-109 (288)
70 PLN02858 fructose-bisphosphate 98.7 2.7E-08 5.8E-13 124.1 10.5 110 228-337 3-116 (1378)
71 PLN02858 fructose-bisphosphate 98.7 3.8E-08 8.3E-13 122.7 11.3 107 229-335 324-434 (1378)
72 COG0499 SAM1 S-adenosylhomocys 98.7 4.7E-08 1E-12 103.5 10.0 101 225-329 205-307 (420)
73 PTZ00142 6-phosphogluconate de 98.7 3.6E-08 7.9E-13 110.6 9.6 120 230-350 2-132 (470)
74 PRK09260 3-hydroxybutyryl-CoA 98.7 2.8E-07 6.1E-12 97.2 14.9 128 230-369 2-156 (288)
75 PF03315 SDH_beta: Serine dehy 98.7 1.4E-08 3E-13 97.9 3.8 116 421-549 20-157 (157)
76 TIGR00873 gnd 6-phosphoglucona 98.6 9.5E-08 2.1E-12 107.3 9.8 118 232-350 2-129 (467)
77 cd01075 NAD_bind_Leu_Phe_Val_D 98.6 4.1E-07 8.8E-12 91.2 11.1 108 224-338 23-133 (200)
78 PF03807 F420_oxidored: NADP o 98.5 1.2E-07 2.7E-12 82.9 6.2 88 231-321 1-96 (96)
79 PLN02688 pyrroline-5-carboxyla 98.5 9.3E-07 2E-11 91.9 13.8 101 230-334 1-108 (266)
80 PRK11064 wecC UDP-N-acetyl-D-m 98.5 2.9E-07 6.3E-12 102.1 10.3 106 230-335 4-135 (415)
81 PRK11861 bifunctional prephena 98.5 3E-08 6.5E-13 116.3 2.5 184 287-487 1-201 (673)
82 PRK07530 3-hydroxybutyryl-CoA 98.5 1.6E-06 3.4E-11 91.7 14.8 129 230-372 5-161 (292)
83 cd04901 ACT_3PGDH C-terminal A 98.5 1.9E-07 4.1E-12 76.6 6.1 68 561-630 2-69 (69)
84 PRK14619 NAD(P)H-dependent gly 98.5 2.4E-07 5.2E-12 98.7 8.2 83 228-322 3-85 (308)
85 PRK07819 3-hydroxybutyryl-CoA 98.5 2.3E-06 5.1E-11 90.4 14.2 130 230-372 6-163 (286)
86 PRK14194 bifunctional 5,10-met 98.5 4.6E-07 9.9E-12 95.8 8.7 80 223-321 153-233 (301)
87 KOG1370 S-adenosylhomocysteine 98.5 7E-07 1.5E-11 92.6 9.6 94 225-323 210-305 (434)
88 PRK15182 Vi polysaccharide bio 98.4 1E-06 2.2E-11 98.1 11.7 135 230-365 7-173 (425)
89 TIGR00561 pntA NAD(P) transhyd 98.4 1.3E-05 2.8E-10 90.6 19.8 177 130-319 64-284 (511)
90 PRK06129 3-hydroxyacyl-CoA deh 98.4 3.1E-06 6.8E-11 90.2 13.9 103 230-335 3-132 (308)
91 PRK12491 pyrroline-5-carboxyla 98.4 6.4E-07 1.4E-11 94.0 8.1 101 230-334 3-110 (272)
92 cd01065 NAD_bind_Shikimate_DH 98.4 2.2E-06 4.7E-11 81.4 10.9 107 225-336 15-131 (155)
93 PRK15040 L-serine dehydratase 98.4 1.4E-06 3E-11 96.2 10.7 146 421-591 22-193 (454)
94 PRK08268 3-hydroxy-acyl-CoA de 98.4 4.5E-06 9.8E-11 94.9 15.3 115 230-350 8-150 (507)
95 PRK05808 3-hydroxybutyryl-CoA 98.4 4.6E-06 1E-10 87.7 14.3 102 230-334 4-131 (282)
96 cd04879 ACT_3PGDH-like ACT_3PG 98.4 1.3E-06 2.8E-11 70.9 7.7 70 561-630 2-71 (71)
97 TIGR00518 alaDH alanine dehydr 98.4 1.2E-06 2.6E-11 95.9 9.6 94 226-319 164-267 (370)
98 PRK06130 3-hydroxybutyryl-CoA 98.4 8.4E-06 1.8E-10 86.8 15.6 109 230-341 5-136 (311)
99 cd04903 ACT_LSD C-terminal ACT 98.4 1.7E-06 3.7E-11 70.4 8.0 71 560-630 1-71 (71)
100 TIGR03026 NDP-sugDHase nucleot 98.3 6.4E-06 1.4E-10 91.3 14.0 100 231-330 2-131 (411)
101 PRK07679 pyrroline-5-carboxyla 98.3 2.1E-06 4.5E-11 90.3 9.4 102 229-334 3-112 (279)
102 PRK06035 3-hydroxyacyl-CoA deh 98.3 1.4E-05 3E-10 84.5 15.5 113 230-347 4-146 (291)
103 PRK07531 bifunctional 3-hydrox 98.3 1.2E-05 2.6E-10 91.3 15.2 104 230-335 5-130 (495)
104 PRK15023 L-serine deaminase; P 98.2 4.1E-06 8.9E-11 92.4 10.0 145 421-591 22-193 (454)
105 PRK11880 pyrroline-5-carboxyla 98.2 1.7E-05 3.7E-10 82.4 14.1 99 230-334 3-107 (267)
106 PRK14189 bifunctional 5,10-met 98.2 3.8E-06 8.3E-11 88.3 9.0 81 223-322 152-233 (285)
107 PRK14188 bifunctional 5,10-met 98.2 3.7E-06 8.1E-11 89.0 8.8 80 223-321 152-232 (296)
108 PRK09424 pntA NAD(P) transhydr 98.2 5E-05 1.1E-09 86.1 17.8 185 130-319 65-285 (509)
109 COG0059 IlvC Ketol-acid reduct 98.2 3.2E-06 6.8E-11 88.2 7.4 89 226-315 15-105 (338)
110 PRK13302 putative L-aspartate 98.2 4.7E-06 1E-10 87.4 8.8 103 229-336 6-115 (271)
111 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.2 2.7E-05 5.8E-10 88.6 15.4 116 230-351 6-149 (503)
112 PRK14618 NAD(P)H-dependent gly 98.2 7.7E-06 1.7E-10 87.8 10.4 86 230-321 5-106 (328)
113 TIGR01724 hmd_rel H2-forming N 98.2 7.4E-06 1.6E-10 86.8 9.8 106 241-350 32-145 (341)
114 PRK00094 gpsA NAD(P)H-dependen 98.2 3.9E-06 8.5E-11 89.4 7.8 90 230-321 2-107 (325)
115 PRK15057 UDP-glucose 6-dehydro 98.2 3E-05 6.5E-10 85.5 14.6 128 231-365 2-160 (388)
116 PRK14179 bifunctional 5,10-met 98.1 6.5E-06 1.4E-10 86.5 8.8 79 223-320 152-231 (284)
117 PRK06444 prephenate dehydrogen 98.1 1.5E-06 3.3E-11 86.9 3.7 176 231-474 2-191 (197)
118 PF01842 ACT: ACT domain; Int 98.1 2.6E-06 5.7E-11 68.8 4.5 65 559-623 1-66 (66)
119 COG1023 Gnd Predicted 6-phosph 98.1 1.5E-05 3.2E-10 80.7 10.3 115 230-347 1-120 (300)
120 PRK07680 late competence prote 98.1 9.4E-06 2E-10 85.0 7.8 100 231-334 2-109 (273)
121 PRK06476 pyrroline-5-carboxyla 98.1 1E-05 2.2E-10 84.0 7.9 99 231-335 2-107 (258)
122 cd01080 NAD_bind_m-THF_DH_Cycl 98.0 2E-05 4.2E-10 77.1 9.4 82 225-325 40-122 (168)
123 KOG2380 Prephenate dehydrogena 98.0 1.9E-05 4.1E-10 83.4 9.7 138 229-370 52-192 (480)
124 PRK14175 bifunctional 5,10-met 97.9 2.8E-05 6.1E-10 81.9 8.8 80 223-321 152-232 (286)
125 PRK08229 2-dehydropantoate 2-r 97.9 4.4E-05 9.6E-10 82.2 10.3 105 230-338 3-125 (341)
126 PRK06928 pyrroline-5-carboxyla 97.9 4.8E-05 1E-09 80.0 10.3 101 230-334 2-111 (277)
127 cd05191 NAD_bind_amino_acid_DH 97.9 6.5E-05 1.4E-09 65.0 9.0 67 225-319 19-86 (86)
128 PRK09287 6-phosphogluconate de 97.9 3.9E-05 8.3E-10 86.2 8.7 110 240-350 1-120 (459)
129 cd04878 ACT_AHAS N-terminal AC 97.8 3.8E-05 8.2E-10 62.4 6.3 69 559-627 1-71 (72)
130 PF01488 Shikimate_DH: Shikima 97.8 2.7E-05 5.9E-10 73.2 5.9 93 226-321 9-111 (135)
131 COG2085 Predicted dinucleotide 97.8 6.3E-05 1.4E-09 75.4 8.5 87 230-319 2-93 (211)
132 PF10727 Rossmann-like: Rossma 97.8 1.6E-05 3.5E-10 74.1 4.0 90 228-319 9-104 (127)
133 PF02737 3HCDH_N: 3-hydroxyacy 97.8 4.6E-05 1E-09 75.2 7.2 128 231-369 1-155 (180)
134 COG0345 ProC Pyrroline-5-carbo 97.8 0.00013 2.7E-09 76.3 10.6 101 230-338 2-112 (266)
135 COG0677 WecC UDP-N-acetyl-D-ma 97.8 0.00032 7E-09 76.0 13.7 141 230-378 10-189 (436)
136 PF01210 NAD_Gly3P_dh_N: NAD-d 97.8 5.6E-05 1.2E-09 72.8 7.2 89 231-321 1-105 (157)
137 PF02882 THF_DHG_CYH_C: Tetrah 97.8 8.2E-05 1.8E-09 72.1 8.2 82 223-323 30-112 (160)
138 PF03721 UDPG_MGDP_dh_N: UDP-g 97.7 9.5E-05 2.1E-09 73.3 8.4 97 230-327 1-128 (185)
139 PRK12557 H(2)-dependent methyl 97.7 0.00012 2.5E-09 79.5 9.7 93 241-334 32-132 (342)
140 cd01079 NAD_bind_m-THF_DH NAD 97.7 0.00015 3.2E-09 72.1 9.4 97 216-319 49-156 (197)
141 TIGR01915 npdG NADPH-dependent 97.7 7.5E-05 1.6E-09 75.8 7.2 89 230-321 1-103 (219)
142 PRK05472 redox-sensing transcr 97.7 3.3E-05 7.2E-10 78.1 4.6 126 192-335 65-201 (213)
143 PRK07634 pyrroline-5-carboxyla 97.7 0.00017 3.6E-09 73.9 9.8 104 228-336 3-114 (245)
144 TIGR00720 sda_mono L-serine de 97.7 8.6E-05 1.9E-09 82.2 7.9 135 437-592 41-194 (455)
145 cd05213 NAD_bind_Glutamyl_tRNA 97.7 0.00013 2.8E-09 78.1 8.8 92 227-320 176-274 (311)
146 PRK13304 L-aspartate dehydroge 97.7 0.00015 3.2E-09 75.9 8.8 101 230-335 2-111 (265)
147 cd05212 NAD_bind_m-THF_DH_Cycl 97.7 0.00034 7.4E-09 66.4 10.4 81 223-322 22-103 (140)
148 TIGR01546 GAPDH-II_archae glyc 97.7 0.00016 3.6E-09 77.8 9.2 85 232-319 1-108 (333)
149 PRK10792 bifunctional 5,10-met 97.7 0.00016 3.5E-09 76.1 8.8 79 223-320 153-232 (285)
150 PTZ00431 pyrroline carboxylate 97.6 0.00013 2.8E-09 76.1 7.8 122 229-369 3-130 (260)
151 cd04874 ACT_Af1403 N-terminal 97.6 0.00021 4.6E-09 58.1 7.5 68 561-629 3-71 (72)
152 PRK00045 hemA glutamyl-tRNA re 97.6 0.00017 3.6E-09 80.5 8.9 91 226-319 179-280 (423)
153 TIGR01035 hemA glutamyl-tRNA r 97.6 0.00017 3.7E-09 80.3 8.9 92 226-320 177-278 (417)
154 cd04889 ACT_PDH-BS-like C-term 97.6 0.00013 2.9E-09 57.5 5.7 46 562-608 2-47 (56)
155 PRK12921 2-dehydropantoate 2-r 97.6 0.00029 6.3E-09 74.4 9.8 107 230-339 1-121 (305)
156 PRK14176 bifunctional 5,10-met 97.6 0.00025 5.3E-09 74.8 8.9 79 223-320 158-237 (287)
157 PF01262 AlaDh_PNT_C: Alanine 97.6 0.00017 3.7E-09 70.2 7.2 94 226-319 17-139 (168)
158 PRK14191 bifunctional 5,10-met 97.6 0.00024 5.1E-09 74.9 8.7 80 223-321 151-231 (285)
159 PF13291 ACT_4: ACT domain; PD 97.6 0.00019 4.1E-09 60.9 6.5 68 561-628 9-79 (80)
160 PRK14178 bifunctional 5,10-met 97.6 0.0002 4.3E-09 75.2 7.9 79 223-320 146-225 (279)
161 PRK06522 2-dehydropantoate 2-r 97.5 0.00051 1.1E-08 72.4 11.1 107 230-340 1-120 (304)
162 PRK14192 bifunctional 5,10-met 97.5 0.0003 6.5E-09 74.4 8.8 80 223-321 153-233 (283)
163 cd05311 NAD_bind_2_malic_enz N 97.5 0.0017 3.7E-08 66.4 13.9 153 224-393 20-196 (226)
164 PLN00203 glutamyl-tRNA reducta 97.5 0.00023 5E-09 81.1 8.1 91 226-319 263-369 (519)
165 PRK08577 hypothetical protein; 97.5 0.001 2.3E-08 62.6 11.3 76 558-633 56-135 (136)
166 PLN02353 probable UDP-glucose 97.5 0.0034 7.4E-08 71.0 17.1 132 230-365 2-176 (473)
167 PRK14183 bifunctional 5,10-met 97.5 0.00043 9.4E-09 72.8 8.8 79 223-320 151-230 (281)
168 PRK14170 bifunctional 5,10-met 97.4 0.00062 1.3E-08 71.7 9.0 80 223-321 151-231 (284)
169 PRK14190 bifunctional 5,10-met 97.4 0.00074 1.6E-08 71.2 9.5 82 222-322 151-233 (284)
170 PRK06249 2-dehydropantoate 2-r 97.4 0.0035 7.6E-08 67.0 14.9 108 230-341 6-127 (313)
171 PRK14186 bifunctional 5,10-met 97.4 0.00066 1.4E-08 72.0 9.1 81 223-322 152-233 (297)
172 PRK11730 fadB multifunctional 97.4 0.0015 3.3E-08 77.5 13.2 128 230-368 314-468 (715)
173 PRK13562 acetolactate synthase 97.4 0.00075 1.6E-08 58.2 7.7 75 559-633 3-80 (84)
174 PRK00258 aroE shikimate 5-dehy 97.4 0.00061 1.3E-08 71.8 8.5 96 224-319 118-221 (278)
175 PRK14169 bifunctional 5,10-met 97.3 0.00076 1.6E-08 71.0 9.1 79 223-320 150-229 (282)
176 TIGR02437 FadB fatty oxidation 97.3 0.002 4.4E-08 76.4 13.5 128 230-368 314-468 (714)
177 PRK14177 bifunctional 5,10-met 97.3 0.00081 1.7E-08 70.9 9.0 79 223-320 153-232 (284)
178 PRK14166 bifunctional 5,10-met 97.3 0.00081 1.8E-08 70.8 9.0 78 223-319 151-229 (282)
179 cd04908 ACT_Bt0572_1 N-termina 97.3 0.00061 1.3E-08 55.7 6.3 58 560-621 3-60 (66)
180 cd04888 ACT_PheB-BS C-terminal 97.3 0.0011 2.3E-08 55.3 7.8 70 560-630 2-75 (76)
181 cd04882 ACT_Bt0572_2 C-termina 97.3 0.0006 1.3E-08 54.8 6.1 59 561-621 2-60 (65)
182 PRK14173 bifunctional 5,10-met 97.3 0.00094 2E-08 70.5 9.1 81 223-322 149-230 (287)
183 PRK14187 bifunctional 5,10-met 97.3 0.00094 2E-08 70.7 9.0 79 223-320 154-233 (294)
184 PF03720 UDPG_MGDP_dh_C: UDP-g 97.3 0.00092 2E-08 60.2 7.7 79 240-319 18-101 (106)
185 PLN02516 methylenetetrahydrofo 97.3 0.00099 2.2E-08 70.7 9.0 79 223-320 161-240 (299)
186 PRK14180 bifunctional 5,10-met 97.3 0.00097 2.1E-08 70.2 8.9 79 223-320 152-231 (282)
187 cd04883 ACT_AcuB C-terminal AC 97.3 0.0008 1.7E-08 55.5 6.6 62 560-621 3-64 (72)
188 PRK14172 bifunctional 5,10-met 97.3 0.0011 2.3E-08 69.8 9.1 78 223-319 152-230 (278)
189 PRK14982 acyl-ACP reductase; P 97.3 0.0021 4.6E-08 69.6 11.6 97 223-325 149-252 (340)
190 PRK08178 acetolactate synthase 97.3 0.001 2.3E-08 58.7 7.5 79 556-634 6-85 (96)
191 cd04881 ACT_HSDH-Hom ACT_HSDH_ 97.3 0.00091 2E-08 55.2 7.0 70 560-629 2-74 (79)
192 TIGR02371 ala_DH_arch alanine 97.3 0.0012 2.5E-08 71.3 9.6 86 229-320 128-223 (325)
193 TIGR02440 FadJ fatty oxidation 97.2 0.0027 5.8E-08 75.3 13.3 129 230-369 305-461 (699)
194 PRK14182 bifunctional 5,10-met 97.2 0.0011 2.4E-08 69.8 9.0 80 223-321 151-231 (282)
195 cd01076 NAD_bind_1_Glu_DH NAD( 97.2 0.0021 4.5E-08 65.9 10.7 34 225-258 27-60 (227)
196 PRK14181 bifunctional 5,10-met 97.2 0.0012 2.6E-08 69.7 9.1 80 223-321 147-231 (287)
197 TIGR02441 fa_ox_alpha_mit fatt 97.2 0.0025 5.3E-08 76.0 12.8 129 230-369 336-491 (737)
198 PRK11152 ilvM acetolactate syn 97.2 0.0016 3.4E-08 55.4 8.0 72 558-629 3-75 (76)
199 PRK14171 bifunctional 5,10-met 97.2 0.0011 2.4E-08 69.9 8.8 78 223-319 153-231 (288)
200 PLN02616 tetrahydrofolate dehy 97.2 0.0011 2.4E-08 71.7 8.7 79 223-320 225-304 (364)
201 PRK06349 homoserine dehydrogen 97.2 0.028 6E-07 63.0 20.2 67 559-626 349-418 (426)
202 PLN02897 tetrahydrofolate dehy 97.2 0.0011 2.4E-08 71.4 8.6 79 223-320 208-287 (345)
203 cd01078 NAD_bind_H4MPT_DH NADP 97.2 0.0022 4.8E-08 63.6 10.3 97 224-324 23-134 (194)
204 PRK06737 acetolactate synthase 97.2 0.0013 2.8E-08 55.9 7.0 70 559-628 3-74 (76)
205 PRK06141 ornithine cyclodeamin 97.1 0.002 4.4E-08 69.1 9.9 84 228-318 124-217 (314)
206 PRK14193 bifunctional 5,10-met 97.1 0.0017 3.7E-08 68.5 9.0 111 223-374 152-265 (284)
207 COG0362 Gnd 6-phosphogluconate 97.1 0.0079 1.7E-07 65.4 14.0 160 230-401 4-173 (473)
208 PRK11154 fadJ multifunctional 97.1 0.0052 1.1E-07 73.0 13.6 128 230-368 310-465 (708)
209 PRK14185 bifunctional 5,10-met 97.1 0.0021 4.5E-08 68.1 9.0 79 223-320 151-234 (293)
210 PF13241 NAD_binding_7: Putati 97.1 0.00068 1.5E-08 60.7 4.4 87 225-319 3-91 (103)
211 COG0373 HemA Glutamyl-tRNA red 97.0 0.0025 5.4E-08 70.4 9.5 91 226-319 175-274 (414)
212 COG0190 FolD 5,10-methylene-te 97.0 0.0019 4.1E-08 67.6 7.8 81 222-321 149-230 (283)
213 PRK11895 ilvH acetolactate syn 97.0 0.0017 3.6E-08 63.1 6.9 76 559-634 3-80 (161)
214 PRK07340 ornithine cyclodeamin 97.0 0.003 6.5E-08 67.5 9.5 86 228-320 124-218 (304)
215 TIGR00507 aroE shikimate 5-deh 97.0 0.0035 7.6E-08 65.7 9.8 94 227-323 115-218 (270)
216 TIGR00119 acolac_sm acetolacta 97.0 0.0021 4.5E-08 62.2 7.3 74 559-632 2-77 (157)
217 PRK14184 bifunctional 5,10-met 97.0 0.0025 5.5E-08 67.3 8.4 78 223-319 151-233 (286)
218 PRK14168 bifunctional 5,10-met 97.0 0.0029 6.3E-08 67.2 8.8 81 223-322 155-240 (297)
219 PRK14031 glutamate dehydrogena 97.0 0.0074 1.6E-07 67.5 12.4 107 224-336 223-359 (444)
220 COG0686 Ald Alanine dehydrogen 96.9 0.0014 3.1E-08 69.1 6.3 94 226-319 165-268 (371)
221 cd04877 ACT_TyrR N-terminal AC 96.9 0.0028 6.1E-08 53.1 6.9 69 561-632 3-72 (74)
222 PRK00194 hypothetical protein; 96.9 0.00098 2.1E-08 57.9 4.2 68 558-627 3-74 (90)
223 cd05313 NAD_bind_2_Glu_DH NAD( 96.9 0.011 2.4E-07 61.5 12.6 108 224-338 33-171 (254)
224 TIGR01921 DAP-DH diaminopimela 96.9 0.0029 6.3E-08 68.0 8.4 85 230-319 4-91 (324)
225 PRK14167 bifunctional 5,10-met 96.9 0.0039 8.5E-08 66.2 9.1 79 223-320 151-234 (297)
226 PRK13940 glutamyl-tRNA reducta 96.9 0.0044 9.6E-08 69.0 9.9 89 226-319 178-273 (414)
227 PRK14174 bifunctional 5,10-met 96.8 0.0035 7.6E-08 66.6 8.4 79 223-320 153-236 (295)
228 cd04887 ACT_MalLac-Enz ACT_Mal 96.8 0.005 1.1E-07 51.0 7.7 66 561-627 2-70 (74)
229 TIGR01763 MalateDH_bact malate 96.8 0.0066 1.4E-07 65.0 10.5 111 230-344 2-147 (305)
230 PRK06718 precorrin-2 dehydroge 96.8 0.0022 4.7E-08 64.6 6.2 90 224-319 5-100 (202)
231 PRK09310 aroDE bifunctional 3- 96.8 0.0028 6E-08 71.9 7.8 71 224-294 327-401 (477)
232 PRK12439 NAD(P)H-dependent gly 96.8 0.0025 5.3E-08 69.2 6.8 89 230-321 8-113 (341)
233 PF01408 GFO_IDH_MocA: Oxidore 96.8 0.0034 7.3E-08 56.8 6.5 63 231-293 2-72 (120)
234 PF13710 ACT_5: ACT domain; PD 96.7 0.0045 9.7E-08 50.6 6.5 61 567-627 1-63 (63)
235 COG1250 FadB 3-hydroxyacyl-CoA 96.7 0.016 3.5E-07 61.9 12.4 128 229-368 3-158 (307)
236 smart00859 Semialdhyde_dh Semi 96.7 0.0028 6E-08 58.1 5.7 88 231-320 1-100 (122)
237 TIGR01470 cysG_Nterm siroheme 96.7 0.0039 8.5E-08 62.9 7.2 90 225-319 5-100 (205)
238 TIGR02992 ectoine_eutC ectoine 96.7 0.0078 1.7E-07 64.9 9.9 86 228-319 128-224 (326)
239 PRK09414 glutamate dehydrogena 96.7 0.011 2.5E-07 66.1 11.2 108 224-338 227-361 (445)
240 TIGR03376 glycerol3P_DH glycer 96.6 0.0055 1.2E-07 66.6 8.3 89 231-321 1-118 (342)
241 COG0240 GpsA Glycerol-3-phosph 96.6 0.0035 7.6E-08 67.2 6.5 93 230-324 2-110 (329)
242 COG2150 Predicted regulator of 96.6 0.005 1.1E-07 58.9 6.6 66 564-629 101-166 (167)
243 PRK14030 glutamate dehydrogena 96.6 0.022 4.8E-07 63.7 12.7 108 224-338 223-361 (445)
244 PRK14620 NAD(P)H-dependent gly 96.6 0.005 1.1E-07 66.1 7.5 90 231-322 2-109 (326)
245 cd05211 NAD_bind_Glu_Leu_Phe_V 96.6 0.015 3.2E-07 59.3 10.5 95 225-325 19-133 (217)
246 PRK08618 ornithine cyclodeamin 96.6 0.0099 2.2E-07 64.1 9.7 86 228-320 126-222 (325)
247 CHL00100 ilvH acetohydroxyacid 96.6 0.0037 8.1E-08 61.4 5.8 74 559-632 3-78 (174)
248 PTZ00345 glycerol-3-phosphate 96.6 0.0074 1.6E-07 66.1 8.7 91 229-321 11-131 (365)
249 PTZ00117 malate dehydrogenase; 96.5 0.011 2.4E-07 63.7 9.7 92 227-319 3-122 (319)
250 cd04876 ACT_RelA-SpoT ACT dom 96.5 0.0073 1.6E-07 47.4 6.3 66 562-628 2-70 (71)
251 cd04869 ACT_GcvR_2 ACT domains 96.5 0.0071 1.5E-07 51.1 6.5 61 561-621 2-69 (81)
252 PRK06046 alanine dehydrogenase 96.5 0.011 2.3E-07 63.9 9.4 85 229-320 129-224 (326)
253 PLN02477 glutamate dehydrogena 96.5 0.1 2.2E-06 58.2 17.1 107 224-338 201-328 (410)
254 PRK06719 precorrin-2 dehydroge 96.5 0.0068 1.5E-07 58.6 7.0 68 224-292 8-79 (157)
255 cd04909 ACT_PDH-BS C-terminal 96.5 0.0071 1.5E-07 49.5 6.1 62 559-620 2-64 (69)
256 TIGR00670 asp_carb_tr aspartat 96.5 0.076 1.7E-06 56.8 15.4 64 226-289 147-222 (301)
257 PRK04435 hypothetical protein; 96.5 0.012 2.7E-07 56.3 8.5 76 556-632 67-146 (147)
258 TIGR02354 thiF_fam2 thiamine b 96.5 0.0085 1.8E-07 60.2 7.7 92 225-317 17-143 (200)
259 PRK12549 shikimate 5-dehydroge 96.5 0.0085 1.9E-07 63.4 8.1 69 226-294 124-203 (284)
260 PF02423 OCD_Mu_crystall: Orni 96.5 0.0078 1.7E-07 64.6 7.9 88 230-321 129-226 (313)
261 cd04893 ACT_GcvR_1 ACT domains 96.5 0.0051 1.1E-07 52.1 5.2 47 560-608 3-49 (77)
262 PRK01710 murD UDP-N-acetylmura 96.4 0.0084 1.8E-07 67.6 8.2 109 226-335 11-141 (458)
263 PRK00676 hemA glutamyl-tRNA re 96.4 0.011 2.3E-07 64.0 8.5 90 226-319 171-261 (338)
264 COG1064 AdhP Zn-dependent alco 96.4 0.0086 1.9E-07 64.7 7.7 65 228-292 166-238 (339)
265 PRK06823 ornithine cyclodeamin 96.4 0.017 3.8E-07 62.1 9.8 86 229-320 128-223 (315)
266 cd04875 ACT_F4HF-DF N-terminal 96.3 0.0088 1.9E-07 50.0 5.8 49 561-609 2-50 (74)
267 PF02558 ApbA: Ketopantoate re 96.3 0.0048 1E-07 58.3 4.8 107 232-341 1-122 (151)
268 PRK00779 ornithine carbamoyltr 96.3 0.11 2.3E-06 55.8 15.2 93 227-319 150-265 (304)
269 PRK01713 ornithine carbamoyltr 96.3 0.079 1.7E-06 57.5 14.4 94 226-319 153-275 (334)
270 cd04870 ACT_PSP_1 CT domains f 96.3 0.011 2.3E-07 49.7 6.0 61 561-621 2-63 (75)
271 PRK06199 ornithine cyclodeamin 96.3 0.016 3.4E-07 63.9 9.0 89 229-320 155-260 (379)
272 cd04884 ACT_CBS C-terminal ACT 96.2 0.011 2.3E-07 49.1 5.8 61 561-621 2-66 (72)
273 TIGR00658 orni_carb_tr ornithi 96.2 0.13 2.9E-06 55.0 15.4 93 227-319 146-264 (304)
274 cd04886 ACT_ThrD-II-like C-ter 96.2 0.011 2.4E-07 47.8 5.5 59 562-620 2-66 (73)
275 PRK08269 3-hydroxybutyryl-CoA 96.1 0.077 1.7E-06 57.1 13.3 103 240-346 1-139 (314)
276 COG2423 Predicted ornithine cy 96.1 0.02 4.4E-07 61.8 8.8 86 229-320 130-226 (330)
277 PRK13301 putative L-aspartate 96.1 0.024 5.2E-07 59.2 8.8 91 230-325 3-99 (267)
278 COG1748 LYS9 Saccharopine dehy 96.1 0.018 3.8E-07 63.5 8.2 85 230-320 2-100 (389)
279 PRK06407 ornithine cyclodeamin 96.1 0.03 6.5E-07 59.8 9.8 85 229-319 117-212 (301)
280 cd05291 HicDH_like L-2-hydroxy 96.1 0.026 5.7E-07 60.2 9.4 93 230-325 1-121 (306)
281 TIGR03026 NDP-sugDHase nucleot 96.1 0.027 5.9E-07 62.6 9.8 89 226-318 310-409 (411)
282 PRK00683 murD UDP-N-acetylmura 96.1 0.018 4E-07 64.0 8.4 67 229-295 3-71 (418)
283 PLN02527 aspartate carbamoyltr 96.1 0.18 3.8E-06 54.2 15.5 65 226-290 148-225 (306)
284 PF00185 OTCace: Aspartate/orn 96.0 0.059 1.3E-06 52.1 10.8 92 228-319 1-120 (158)
285 KOG2304 3-hydroxyacyl-CoA dehy 96.0 0.0067 1.4E-07 61.4 4.1 174 228-424 10-217 (298)
286 PRK07589 ornithine cyclodeamin 96.0 0.03 6.6E-07 61.0 9.5 87 229-319 129-225 (346)
287 PLN02353 probable UDP-glucose 95.9 0.039 8.4E-07 62.6 10.3 101 225-329 320-455 (473)
288 COG1712 Predicted dinucleotide 95.9 0.018 3.9E-07 58.4 6.7 92 231-327 2-99 (255)
289 PRK13303 L-aspartate dehydroge 95.9 0.028 6E-07 58.9 8.5 64 230-293 2-71 (265)
290 PF13740 ACT_6: ACT domain; PD 95.9 0.0075 1.6E-07 50.9 3.4 58 563-620 7-64 (76)
291 PF00208 ELFV_dehydrog: Glutam 95.9 0.031 6.8E-07 57.9 8.7 107 225-338 28-164 (244)
292 PTZ00079 NADP-specific glutama 95.9 0.12 2.6E-06 58.0 13.6 95 224-323 232-357 (454)
293 PF01118 Semialdhyde_dh: Semia 95.8 0.0095 2.1E-07 54.7 4.1 85 231-320 1-98 (121)
294 PRK08291 ectoine utilization p 95.8 0.041 8.9E-07 59.5 9.6 82 228-315 131-223 (330)
295 cd04926 ACT_ACR_4 C-terminal 95.8 0.033 7.1E-07 46.5 6.9 59 560-620 3-65 (72)
296 PRK02255 putrescine carbamoylt 95.8 0.23 5E-06 54.0 15.3 64 226-289 151-228 (338)
297 PRK04207 glyceraldehyde-3-phos 95.8 0.024 5.3E-07 61.6 7.8 30 231-260 3-34 (341)
298 COG0334 GdhA Glutamate dehydro 95.8 0.032 6.9E-07 61.4 8.6 108 224-338 202-330 (411)
299 PRK03515 ornithine carbamoyltr 95.8 0.11 2.5E-06 56.3 12.7 65 226-290 153-232 (336)
300 cd04872 ACT_1ZPV ACT domain pr 95.8 0.0082 1.8E-07 52.0 3.3 62 559-622 2-67 (88)
301 TIGR01850 argC N-acetyl-gamma- 95.8 0.026 5.7E-07 61.4 7.9 85 230-320 1-100 (346)
302 PRK03369 murD UDP-N-acetylmura 95.7 0.025 5.5E-07 64.3 7.9 66 227-292 10-79 (488)
303 COG1707 ACT domain-containing 95.7 0.028 6E-07 54.2 6.8 71 561-631 5-76 (218)
304 KOG0023 Alcohol dehydrogenase, 95.7 0.024 5.1E-07 60.4 6.9 92 224-319 178-279 (360)
305 PRK04284 ornithine carbamoyltr 95.7 0.16 3.4E-06 55.2 13.5 94 226-319 152-274 (332)
306 PRK00856 pyrB aspartate carbam 95.7 0.18 3.9E-06 54.0 13.6 63 226-290 153-220 (305)
307 PRK11064 wecC UDP-N-acetyl-D-m 95.6 0.035 7.6E-07 61.9 8.1 71 224-294 315-397 (415)
308 TIGR02356 adenyl_thiF thiazole 95.6 0.024 5.2E-07 57.0 6.2 37 225-261 17-54 (202)
309 PRK06223 malate dehydrogenase; 95.5 0.06 1.3E-06 57.3 9.5 62 230-292 3-79 (307)
310 COG0026 PurK Phosphoribosylami 95.5 0.029 6.3E-07 60.8 6.9 61 229-289 1-68 (375)
311 cd00650 LDH_MDH_like NAD-depen 95.5 0.035 7.6E-07 57.9 7.4 111 232-345 1-148 (263)
312 PRK02102 ornithine carbamoyltr 95.5 0.2 4.3E-06 54.3 13.2 94 226-319 152-273 (331)
313 PRK14804 ornithine carbamoyltr 95.5 0.27 5.9E-06 52.8 14.3 66 226-291 150-226 (311)
314 PF02254 TrkA_N: TrkA-N domain 95.5 0.034 7.5E-07 50.0 6.4 84 232-317 1-94 (116)
315 TIGR01809 Shik-DH-AROM shikima 95.5 0.054 1.2E-06 57.3 8.6 69 226-294 122-201 (282)
316 cd04905 ACT_CM-PDT C-terminal 95.4 0.051 1.1E-06 46.1 6.9 69 560-630 3-76 (80)
317 TIGR03316 ygeW probable carbam 95.4 0.33 7E-06 53.2 14.7 65 226-290 167-252 (357)
318 PRK11891 aspartate carbamoyltr 95.4 0.3 6.5E-06 54.7 14.5 66 226-291 238-316 (429)
319 TIGR00655 PurU formyltetrahydr 95.4 0.049 1.1E-06 57.7 8.0 61 560-620 2-66 (280)
320 PRK13814 pyrB aspartate carbam 95.4 0.32 7E-06 52.3 14.3 63 227-289 155-223 (310)
321 PLN02342 ornithine carbamoyltr 95.4 0.38 8.2E-06 52.5 14.9 94 226-319 191-307 (348)
322 KOG2653 6-phosphogluconate deh 95.4 0.19 4.1E-06 54.2 12.1 149 230-390 7-165 (487)
323 PRK00066 ldh L-lactate dehydro 95.3 0.087 1.9E-06 56.7 9.7 65 228-292 5-82 (315)
324 PLN02520 bifunctional 3-dehydr 95.3 0.07 1.5E-06 61.4 9.4 70 224-293 374-449 (529)
325 COG1648 CysG Siroheme synthase 95.3 0.036 7.8E-07 56.2 6.2 90 224-319 7-103 (210)
326 PTZ00082 L-lactate dehydrogena 95.2 0.082 1.8E-06 57.0 9.3 65 227-292 4-83 (321)
327 PRK00048 dihydrodipicolinate r 95.2 0.04 8.6E-07 57.5 6.5 63 230-292 2-69 (257)
328 COG0569 TrkA K+ transport syst 95.2 0.031 6.8E-07 57.2 5.6 63 230-292 1-75 (225)
329 PRK12548 shikimate 5-dehydroge 95.2 0.077 1.7E-06 56.3 8.8 37 226-262 123-160 (289)
330 PRK01390 murD UDP-N-acetylmura 95.2 0.043 9.4E-07 61.8 7.2 64 226-289 6-71 (460)
331 PRK13010 purU formyltetrahydro 95.1 0.038 8.2E-07 58.7 6.3 50 558-607 9-58 (289)
332 PRK14106 murD UDP-N-acetylmura 95.1 0.068 1.5E-06 59.8 8.7 110 226-335 2-132 (450)
333 PF01113 DapB_N: Dihydrodipico 95.1 0.026 5.7E-07 52.2 4.4 61 231-291 2-75 (124)
334 PRK08300 acetaldehyde dehydrog 95.1 0.079 1.7E-06 56.6 8.5 86 229-319 4-101 (302)
335 PRK12562 ornithine carbamoyltr 95.1 0.49 1.1E-05 51.4 14.6 94 226-319 153-275 (334)
336 TIGR03215 ac_ald_DH_ac acetald 95.1 0.097 2.1E-06 55.6 9.0 85 230-319 2-95 (285)
337 PRK12749 quinate/shikimate deh 95.0 0.11 2.5E-06 55.1 9.5 71 224-294 119-207 (288)
338 PRK15182 Vi polysaccharide bio 95.0 0.12 2.6E-06 57.9 10.1 96 224-323 309-416 (425)
339 cd05312 NAD_bind_1_malic_enz N 95.0 0.89 1.9E-05 48.1 15.8 183 190-395 4-224 (279)
340 COG0281 SfcA Malic enzyme [Ene 95.0 1.2 2.6E-05 49.3 17.3 182 174-394 165-371 (432)
341 cd00762 NAD_bind_malic_enz NAD 95.0 1.2 2.7E-05 46.4 16.5 181 191-393 5-223 (254)
342 PRK02472 murD UDP-N-acetylmura 94.9 0.078 1.7E-06 59.3 8.2 110 226-335 2-132 (447)
343 PRK00141 murD UDP-N-acetylmura 94.9 0.065 1.4E-06 60.8 7.6 66 225-290 11-81 (473)
344 PRK09496 trkA potassium transp 94.8 0.051 1.1E-06 60.7 6.5 65 230-294 1-76 (453)
345 COG1004 Ugd Predicted UDP-gluc 94.8 0.23 4.9E-06 54.6 11.1 102 230-331 1-132 (414)
346 PRK00421 murC UDP-N-acetylmura 94.8 0.069 1.5E-06 60.2 7.6 109 227-335 5-131 (461)
347 PRK02006 murD UDP-N-acetylmura 94.8 0.072 1.6E-06 60.7 7.7 64 227-290 5-76 (498)
348 cd04873 ACT_UUR-ACR-like ACT d 94.8 0.1 2.3E-06 42.1 6.6 59 560-620 2-64 (70)
349 COG4747 ACT domain-containing 94.7 0.19 4.1E-06 46.0 8.6 59 559-620 70-128 (142)
350 PRK04523 N-acetylornithine car 94.7 1.4 3E-05 48.0 17.0 65 227-291 166-252 (335)
351 cd04900 ACT_UUR-like_1 ACT dom 94.7 0.14 3.1E-06 42.6 7.4 60 559-619 2-66 (73)
352 COG1004 Ugd Predicted UDP-gluc 94.7 0.097 2.1E-06 57.4 7.8 87 227-317 308-406 (414)
353 COG0771 MurD UDP-N-acetylmuram 94.6 0.066 1.4E-06 60.1 6.8 122 227-349 5-156 (448)
354 PRK09880 L-idonate 5-dehydroge 94.6 0.12 2.6E-06 55.6 8.6 46 228-273 169-216 (343)
355 cd05293 LDH_1 A subgroup of L- 94.6 0.23 5E-06 53.4 10.7 89 230-319 4-120 (312)
356 PRK08306 dipicolinate synthase 94.6 0.14 3.1E-06 54.5 9.0 90 228-320 1-101 (296)
357 cd05292 LDH_2 A subgroup of L- 94.6 0.066 1.4E-06 57.3 6.4 64 230-294 1-78 (308)
358 COG5322 Predicted dehydrogenas 94.6 0.13 2.8E-06 53.7 8.0 112 199-326 148-268 (351)
359 COG0788 PurU Formyltetrahydrof 94.6 0.053 1.1E-06 56.2 5.2 55 557-611 6-60 (287)
360 PRK06019 phosphoribosylaminoim 94.5 0.08 1.7E-06 58.1 7.1 61 229-289 2-69 (372)
361 PRK07232 bifunctional malic en 94.4 2.1 4.6E-05 51.2 18.9 159 175-370 152-325 (752)
362 PRK00436 argC N-acetyl-gamma-g 94.4 0.099 2.2E-06 56.9 7.4 87 230-321 3-101 (343)
363 PRK06027 purU formyltetrahydro 94.4 0.11 2.3E-06 55.2 7.4 65 558-622 6-74 (286)
364 PRK11579 putative oxidoreducta 94.4 0.097 2.1E-06 56.7 7.2 63 230-293 5-74 (346)
365 PRK01438 murD UDP-N-acetylmura 94.3 0.11 2.5E-06 58.6 8.0 72 224-295 11-90 (480)
366 PRK06270 homoserine dehydrogen 94.3 0.19 4.1E-06 54.7 9.3 106 231-336 4-143 (341)
367 cd08230 glucose_DH Glucose deh 94.3 0.12 2.6E-06 55.7 7.8 47 228-274 172-222 (355)
368 PRK12475 thiamine/molybdopteri 94.3 0.092 2E-06 57.1 6.8 37 225-261 20-57 (338)
369 cd00300 LDH_like L-lactate deh 94.3 0.15 3.3E-06 54.3 8.4 87 232-319 1-115 (300)
370 TIGR02964 xanthine_xdhC xanthi 94.3 0.2 4.3E-06 52.1 8.9 84 230-334 101-184 (246)
371 cd04880 ACT_AAAH-PDT-like ACT 94.2 0.12 2.6E-06 43.1 5.9 60 561-620 2-66 (75)
372 PRK10669 putative cation:proto 94.2 0.073 1.6E-06 61.6 6.1 69 230-298 418-496 (558)
373 cd01339 LDH-like_MDH L-lactate 94.2 0.071 1.5E-06 56.7 5.6 60 232-292 1-75 (300)
374 cd00757 ThiF_MoeB_HesA_family 94.2 0.071 1.5E-06 54.5 5.3 37 225-261 17-54 (228)
375 cd02116 ACT ACT domains are co 94.1 0.12 2.6E-06 38.1 5.3 57 562-618 2-59 (60)
376 PRK07200 aspartate/ornithine c 94.1 1.1 2.3E-05 49.8 14.7 65 226-290 184-269 (395)
377 PRK12862 malic enzyme; Reviewe 94.1 2.7 5.8E-05 50.6 19.0 157 175-370 160-333 (763)
378 cd04899 ACT_ACR-UUR-like_2 C-t 94.1 0.16 3.5E-06 41.3 6.4 58 561-620 3-64 (70)
379 PLN02968 Probable N-acetyl-gam 94.0 0.11 2.3E-06 57.5 6.7 94 227-326 36-141 (381)
380 PRK13011 formyltetrahydrofolat 94.0 0.17 3.7E-06 53.8 7.9 64 558-621 7-73 (286)
381 cd04925 ACT_ACR_2 ACT domain-c 94.0 0.21 4.6E-06 41.9 6.9 58 561-620 3-66 (74)
382 COG0169 AroE Shikimate 5-dehyd 93.9 0.19 4.2E-06 53.3 7.9 93 225-320 122-227 (283)
383 PRK05708 2-dehydropantoate 2-r 93.7 0.23 5E-06 53.1 8.4 109 230-341 3-125 (305)
384 PRK10637 cysG siroheme synthas 93.7 0.16 3.5E-06 57.4 7.6 91 224-319 7-103 (457)
385 PRK03659 glutathione-regulated 93.7 0.13 2.9E-06 60.1 7.1 90 229-320 400-499 (601)
386 PRK08192 aspartate carbamoyltr 93.7 1.4 3E-05 48.1 14.2 67 224-290 154-233 (338)
387 cd05297 GH4_alpha_glucosidase_ 93.7 0.21 4.7E-06 55.9 8.3 64 230-293 1-84 (423)
388 cd04928 ACT_TyrKc Uncharacteri 93.6 0.23 5E-06 41.4 6.4 49 559-608 2-50 (68)
389 PRK11589 gcvR glycine cleavage 93.6 0.076 1.6E-06 53.1 4.2 37 559-595 96-132 (190)
390 PF13380 CoA_binding_2: CoA bi 93.6 0.19 4.2E-06 46.0 6.5 98 230-338 1-103 (116)
391 PF00056 Ldh_1_N: lactate/mala 93.6 0.081 1.8E-06 50.1 4.2 63 230-292 1-78 (141)
392 TIGR03366 HpnZ_proposed putati 93.6 0.22 4.8E-06 52.0 7.9 45 228-272 120-166 (280)
393 TIGR00036 dapB dihydrodipicoli 93.5 0.16 3.5E-06 53.2 6.8 30 231-260 3-35 (266)
394 PRK05690 molybdopterin biosynt 93.5 0.12 2.7E-06 53.5 5.6 37 225-261 28-65 (245)
395 PRK04308 murD UDP-N-acetylmura 93.5 0.19 4.2E-06 56.3 7.6 66 227-292 3-76 (445)
396 PRK05562 precorrin-2 dehydroge 93.3 0.22 4.7E-06 51.0 7.0 91 224-319 20-116 (223)
397 COG0673 MviM Predicted dehydro 93.3 0.19 4.1E-06 53.7 6.9 63 230-292 4-76 (342)
398 PRK13376 pyrB bifunctional asp 93.2 1.3 2.9E-05 50.8 13.8 96 224-319 169-293 (525)
399 PRK03803 murD UDP-N-acetylmura 93.2 0.21 4.6E-06 56.0 7.5 106 229-335 6-132 (448)
400 COG3288 PntA NAD/NADP transhyd 93.2 0.14 2.9E-06 54.4 5.4 95 224-319 159-281 (356)
401 KOG0022 Alcohol dehydrogenase, 93.2 0.36 7.9E-06 51.5 8.5 46 228-273 192-239 (375)
402 PRK04690 murD UDP-N-acetylmura 93.1 0.2 4.3E-06 56.8 7.1 64 227-291 6-77 (468)
403 TIGR02822 adh_fam_2 zinc-bindi 93.1 0.26 5.6E-06 52.9 7.7 87 228-319 165-254 (329)
404 PLN02602 lactate dehydrogenase 93.1 0.48 1E-05 51.8 9.7 89 230-319 38-154 (350)
405 PRK04148 hypothetical protein; 93.1 0.22 4.8E-06 47.0 6.1 64 228-292 16-86 (134)
406 PLN02819 lysine-ketoglutarate 93.1 0.29 6.3E-06 60.3 8.7 66 228-293 568-658 (1042)
407 TIGR01381 E1_like_apg7 E1-like 93.0 0.2 4.4E-06 58.3 7.0 127 176-319 296-480 (664)
408 PRK07688 thiamine/molybdopteri 93.0 0.18 3.9E-06 54.9 6.2 37 225-261 20-57 (339)
409 PRK08762 molybdopterin biosynt 92.9 0.27 5.9E-06 54.1 7.6 75 170-261 93-168 (376)
410 PRK09496 trkA potassium transp 92.8 0.35 7.5E-06 54.1 8.4 67 227-293 229-307 (453)
411 PRK03562 glutathione-regulated 92.8 0.22 4.9E-06 58.4 7.1 88 229-318 400-497 (621)
412 PRK03806 murD UDP-N-acetylmura 92.8 0.5 1.1E-05 52.8 9.6 108 227-335 4-129 (438)
413 PLN02948 phosphoribosylaminoim 92.7 0.31 6.8E-06 56.7 8.1 69 226-294 19-94 (577)
414 PRK12861 malic enzyme; Reviewe 92.7 5 0.00011 48.2 18.0 119 176-322 157-291 (764)
415 COG0440 IlvH Acetolactate synt 92.7 0.38 8.2E-06 46.7 7.2 74 557-630 3-78 (163)
416 PRK14027 quinate/shikimate deh 92.6 0.62 1.3E-05 49.4 9.5 69 226-294 124-205 (283)
417 PF13478 XdhC_C: XdhC Rossmann 92.6 0.18 3.9E-06 47.7 4.9 80 232-336 1-80 (136)
418 PRK10872 relA (p)ppGpp synthet 92.4 0.29 6.2E-06 58.3 7.3 70 560-629 668-740 (743)
419 COG1893 ApbA Ketopantoate redu 92.4 0.28 6E-06 52.7 6.6 140 230-373 1-154 (307)
420 COG4007 Predicted dehydrogenas 92.4 0.94 2E-05 47.1 9.9 83 241-324 33-122 (340)
421 TIGR01761 thiaz-red thiazoliny 92.3 0.46 1E-05 51.8 8.2 63 230-293 4-72 (343)
422 PF02629 CoA_binding: CoA bind 92.3 0.098 2.1E-06 46.1 2.5 61 230-292 4-71 (96)
423 cd01486 Apg7 Apg7 is an E1-lik 92.2 0.23 4.9E-06 53.1 5.6 85 231-319 1-140 (307)
424 TIGR01532 E4PD_g-proteo D-eryt 92.2 0.43 9.4E-06 51.6 7.8 30 231-260 1-34 (325)
425 PLN02586 probable cinnamyl alc 92.1 0.63 1.4E-05 50.6 9.1 45 228-272 183-229 (360)
426 cd05188 MDR Medium chain reduc 92.0 1.3 2.7E-05 44.8 10.7 88 228-320 134-233 (271)
427 cd05294 LDH-like_MDH_nadp A la 92.0 0.45 9.8E-06 51.0 7.7 63 230-293 1-82 (309)
428 TIGR03201 dearomat_had 6-hydro 92.0 0.47 1E-05 51.1 7.9 45 228-272 166-211 (349)
429 TIGR01851 argC_other N-acetyl- 92.0 0.44 9.6E-06 51.1 7.5 75 231-319 3-80 (310)
430 TIGR01161 purK phosphoribosyla 91.9 0.35 7.5E-06 52.5 6.8 60 231-290 1-67 (352)
431 TIGR02355 moeB molybdopterin s 91.9 0.23 5E-06 51.3 5.2 37 225-261 20-57 (240)
432 PF13460 NAD_binding_10: NADH( 91.9 0.29 6.3E-06 47.2 5.6 63 232-295 1-72 (183)
433 PRK14805 ornithine carbamoyltr 91.8 3.6 7.7E-05 44.2 14.1 65 226-291 144-222 (302)
434 PRK10206 putative oxidoreducta 91.8 0.36 7.8E-06 52.5 6.7 63 231-293 3-74 (344)
435 TIGR01772 MDH_euk_gproteo mala 91.7 0.56 1.2E-05 50.5 8.0 88 231-319 1-116 (312)
436 COG3830 ACT domain-containing 91.7 0.12 2.6E-06 45.2 2.3 32 561-592 6-37 (90)
437 PRK03815 murD UDP-N-acetylmura 91.7 0.43 9.3E-06 53.1 7.3 102 231-335 2-113 (401)
438 PF03435 Saccharop_dh: Sacchar 91.6 0.29 6.2E-06 53.8 5.7 63 232-294 1-78 (386)
439 PRK01368 murD UDP-N-acetylmura 91.6 0.48 1E-05 53.6 7.6 106 228-335 5-128 (454)
440 cd04927 ACT_ACR-like_2 Second 91.6 0.74 1.6E-05 38.9 7.0 44 562-606 4-47 (76)
441 TIGR01087 murD UDP-N-acetylmur 91.5 0.89 1.9E-05 50.7 9.6 104 231-335 1-126 (433)
442 COG2716 GcvR Glycine cleavage 91.5 0.39 8.4E-06 46.9 5.7 35 561-595 95-129 (176)
443 cd08239 THR_DH_like L-threonin 91.4 0.58 1.3E-05 49.9 7.8 45 228-272 163-209 (339)
444 TIGR02853 spore_dpaA dipicolin 91.4 0.76 1.7E-05 48.8 8.5 90 229-321 1-101 (287)
445 PRK08644 thiamine biosynthesis 91.3 0.35 7.7E-06 49.0 5.6 37 225-261 24-61 (212)
446 PTZ00325 malate dehydrogenase; 91.3 0.49 1.1E-05 51.1 7.0 67 226-292 5-85 (321)
447 PRK05086 malate dehydrogenase; 91.1 1.2 2.5E-05 48.0 9.7 64 230-293 1-79 (312)
448 PRK05597 molybdopterin biosynt 91.1 0.3 6.5E-06 53.4 5.3 37 225-261 24-61 (355)
449 PRK11863 N-acetyl-gamma-glutam 91.1 0.46 1E-05 51.1 6.5 76 230-319 3-81 (313)
450 COG0078 ArgF Ornithine carbamo 91.1 4.9 0.00011 43.0 13.8 93 227-319 151-270 (310)
451 PF03447 NAD_binding_3: Homose 91.0 0.31 6.6E-06 44.2 4.4 95 236-335 1-109 (117)
452 cd08281 liver_ADH_like1 Zinc-d 91.0 0.75 1.6E-05 50.1 8.2 45 228-272 191-237 (371)
453 cd04896 ACT_ACR-like_3 ACT dom 91.0 0.81 1.7E-05 38.9 6.6 60 561-620 3-66 (75)
454 PLN02178 cinnamyl-alcohol dehy 91.0 0.85 1.9E-05 50.0 8.7 45 228-272 178-224 (375)
455 PRK15057 UDP-glucose 6-dehydro 91.0 0.65 1.4E-05 51.5 7.7 63 227-291 294-367 (388)
456 PRK11589 gcvR glycine cleavage 90.9 0.26 5.7E-06 49.2 4.1 44 562-605 12-55 (190)
457 CHL00194 ycf39 Ycf39; Provisio 90.6 0.65 1.4E-05 49.4 7.2 63 230-292 1-73 (317)
458 cd04885 ACT_ThrD-I Tandem C-te 90.6 0.48 1E-05 38.9 4.8 58 562-620 2-61 (68)
459 COG1063 Tdh Threonine dehydrog 90.6 0.91 2E-05 49.5 8.4 85 230-319 170-269 (350)
460 PF05368 NmrA: NmrA-like famil 90.5 0.47 1E-05 47.9 5.7 63 232-294 1-75 (233)
461 cd05283 CAD1 Cinnamyl alcohol 90.5 1.2 2.5E-05 47.7 9.0 45 228-272 169-214 (337)
462 PRK07877 hypothetical protein; 90.5 0.36 7.7E-06 57.5 5.4 96 226-325 104-235 (722)
463 PRK05600 thiamine biosynthesis 90.4 0.24 5.2E-06 54.5 3.8 52 208-261 22-74 (370)
464 PRK12809 putative oxidoreducta 90.4 1.2 2.5E-05 52.7 9.6 36 227-262 308-343 (639)
465 PRK12769 putative oxidoreducta 90.4 0.83 1.8E-05 54.0 8.5 35 227-261 325-359 (654)
466 cd01337 MDH_glyoxysomal_mitoch 90.4 1.1 2.4E-05 48.2 8.6 90 230-319 1-117 (310)
467 cd04895 ACT_ACR_1 ACT domain-c 90.4 1.1 2.3E-05 37.9 6.7 59 560-620 3-66 (72)
468 PRK12550 shikimate 5-dehydroge 90.3 0.68 1.5E-05 48.9 6.9 63 229-293 122-188 (272)
469 PRK08223 hypothetical protein; 90.3 0.46 9.9E-06 50.5 5.5 36 226-261 24-60 (287)
470 COG0540 PyrB Aspartate carbamo 90.3 2.1 4.6E-05 45.7 10.4 63 227-289 156-230 (316)
471 PRK11092 bifunctional (p)ppGpp 90.1 0.66 1.4E-05 55.2 7.3 70 560-630 628-700 (702)
472 PRK14573 bifunctional D-alanyl 90.1 0.68 1.5E-05 56.1 7.6 106 230-335 5-128 (809)
473 PRK02705 murD UDP-N-acetylmura 90.1 0.9 1.9E-05 51.0 8.1 104 231-335 2-133 (459)
474 PLN02740 Alcohol dehydrogenase 90.1 1.1 2.4E-05 49.0 8.6 45 228-272 198-244 (381)
475 cd01487 E1_ThiF_like E1_ThiF_l 90.0 0.74 1.6E-05 45.2 6.4 31 231-261 1-32 (174)
476 PLN02272 glyceraldehyde-3-phos 89.9 0.46 9.9E-06 53.0 5.4 35 230-264 86-122 (421)
477 PRK06382 threonine dehydratase 89.9 0.43 9.3E-06 53.1 5.2 68 554-621 326-399 (406)
478 TIGR03451 mycoS_dep_FDH mycoth 89.7 1.1 2.5E-05 48.3 8.3 45 228-272 176-222 (358)
479 cd08237 ribitol-5-phosphate_DH 89.7 1.3 2.8E-05 47.7 8.6 44 228-271 163-209 (341)
480 cd01336 MDH_cytoplasmic_cytoso 89.7 0.59 1.3E-05 50.5 6.0 63 231-293 4-88 (325)
481 PLN00106 malate dehydrogenase 89.7 0.72 1.6E-05 49.9 6.5 64 229-292 18-95 (323)
482 PRK04663 murD UDP-N-acetylmura 89.6 1 2.2E-05 50.5 8.0 108 227-335 4-132 (438)
483 cd05290 LDH_3 A subgroup of L- 89.6 0.69 1.5E-05 49.6 6.3 62 231-292 1-77 (307)
484 TIGR01082 murC UDP-N-acetylmur 89.5 0.78 1.7E-05 51.6 7.0 103 232-335 2-123 (448)
485 cd04906 ACT_ThrD-I_1 First of 89.5 0.75 1.6E-05 39.6 5.4 58 561-620 4-64 (85)
486 KOG2663 Acetolactate synthase, 89.5 0.35 7.7E-06 49.7 3.7 72 556-627 75-148 (309)
487 cd01338 MDH_choloroplast_like 89.5 0.46 9.9E-06 51.4 4.9 64 230-293 3-88 (322)
488 cd01483 E1_enzyme_family Super 89.4 2.7 5.8E-05 39.4 9.5 32 231-262 1-33 (143)
489 PRK08664 aspartate-semialdehyd 89.4 0.83 1.8E-05 49.8 6.8 83 230-319 4-107 (349)
490 TIGR01202 bchC 2-desacetyl-2-h 89.3 1.1 2.4E-05 47.6 7.6 34 228-261 144-178 (308)
491 TIGR00691 spoT_relA (p)ppGpp s 89.0 0.87 1.9E-05 54.1 7.2 68 560-628 612-682 (683)
492 PRK06392 homoserine dehydrogen 89.0 1.9 4.2E-05 46.7 9.2 104 231-335 2-133 (326)
493 cd08296 CAD_like Cinnamyl alco 88.8 1.8 3.9E-05 46.1 8.9 45 228-272 163-208 (333)
494 PRK12814 putative NADPH-depend 88.6 2.1 4.5E-05 50.7 9.9 36 227-262 191-226 (652)
495 PLN02383 aspartate semialdehyd 88.5 0.88 1.9E-05 49.7 6.3 85 228-319 6-100 (344)
496 PRK10537 voltage-gated potassi 88.5 1.2 2.6E-05 49.5 7.3 65 229-294 240-313 (393)
497 TIGR01318 gltD_gamma_fam gluta 88.4 1.4 3E-05 50.0 8.0 35 227-261 139-173 (467)
498 TIGR01759 MalateDH-SF1 malate 88.4 1.2 2.7E-05 48.1 7.2 62 231-292 5-88 (323)
499 PRK12771 putative glutamate sy 88.3 1.4 3E-05 51.1 8.1 36 226-261 134-169 (564)
500 cd08255 2-desacetyl-2-hydroxye 88.2 1.6 3.4E-05 44.9 7.7 88 228-320 97-191 (277)
No 1
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=1.5e-108 Score=927.29 Aligned_cols=522 Identities=44% Similarity=0.713 Sum_probs=493.0
Q ss_pred eEEEeCCCCHhHHHHhhcC-CcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccchh
Q 006212 92 TILVSEKLGEAGLAILRSF-GNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQ 170 (656)
Q Consensus 92 ~ilv~~~l~~~~~~~l~~~-~~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~~ 170 (656)
|||+++++.+..++.|++. .++......+++++.+.++++|++++++.+++++++++++ |+||||+++|+|+||||++
T Consensus 1 ~vli~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~ 79 (525)
T TIGR01327 1 KVLIADPISPDGIDILEDVGVEVDVQTGLSREELLEIIPDYDALIVRSATKVTEEVIAAA-PKLKVIGRAGVGVDNIDIE 79 (525)
T ss_pred CEEEeCCCCHHHHHHHHhcCcEEEeCCCCCHHHHHHHhcCCCEEEEcCCCCcCHHHHhhC-CCceEEEECCcccchhcHH
Confidence 4889999999998888765 3666544567889999999999999998889999999988 5999999999999999999
Q ss_pred hHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhc
Q 006212 171 AATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKG 250 (656)
Q Consensus 171 aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~ 250 (656)
+|+++||.|+|+||+|+.+||||+++|||+++|+++++++.+++|+|.+..+.|.+|+||||||||+|+||+.+|++|++
T Consensus 80 ~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~ 159 (525)
T TIGR01327 80 AATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKA 159 (525)
T ss_pred HHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999986677899999999999999999999999999
Q ss_pred CCCEEEEECCCCChhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHH
Q 006212 251 LGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEAL 329 (656)
Q Consensus 251 ~G~~Vi~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL 329 (656)
|||+|++|||+.+.+.+...|+..+ ++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||++||++||
T Consensus 160 fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL 239 (525)
T TIGR01327 160 FGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAAL 239 (525)
T ss_pred CCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHH
Confidence 9999999999866666677788766 899999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChh
Q 006212 330 VRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSE 409 (656)
Q Consensus 330 ~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~Vn~p~~~~~ 409 (656)
+++|++|+|+||+||||+.||+ .++|||++|||++|||+|++|.|++++++..+++|+.+|++|+++.+.||.|.++++
T Consensus 240 ~~aL~~g~i~gAaLDVf~~EP~-~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~~~~~~~ 318 (525)
T TIGR01327 240 YEALEEGHVRAAALDVFEKEPP-TDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLPVPNAVNAPGIDAD 318 (525)
T ss_pred HHHHHcCCeeEEEEecCCCCCC-CCChhhcCCCeEECCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCceeeCCCCCch
Confidence 9999999999999999999996 589999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHHhHHHHHhhcCCCCceEEEEEEeecCCCCCcccccccHHHHHHhhhhhhhccccccchHhHhhccC
Q 006212 410 VLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKG 489 (656)
Q Consensus 410 ~~~~l~p~~~laerlG~l~~qL~~g~~~~k~i~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~iAke~G 489 (656)
.++.++||+.||+|||++++||+++ .+++++++|+||++ . ++++++++|+++|+|+...++++|++||+.+|||+|
T Consensus 319 ~~~~~~~~~~la~riG~~a~ql~~~--~~~~v~i~~~GsfA-~-~~~~~~~~a~l~GlL~~~~~~d~~~~nA~~iA~e~G 394 (525)
T TIGR01327 319 VMEKLKPYLDLAEKLGKLAGQLLDG--AVQSVEVTYRGELA-T-ENSEPLTRAALKGLLSPVLDDEVNMVNAPAVAKERG 394 (525)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHcCC--CceEEEEEEEcchh-c-ccccHHHHHHHHHhCccccCCCccccCHHHHHHHcC
Confidence 9999999999999999999999998 89999999999998 4 599999999999999887776799999999999999
Q ss_pred ceEEEEEeecCCCCCCCCceEEEEEEecccccceecCCCcEEEEEEEEEC-CeeEEEEEcceeEEeecCccEEEEEecCC
Q 006212 490 LRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKF-GIPHLTRVGSFGVDASLEGNLILCRQVDQ 568 (656)
Q Consensus 490 I~v~~~~~~~~~~~~~~~ntv~i~l~~~~~~~~~~~~~~~~~~v~Gt~~g-G~~rI~~IdGf~V~~~g~~~~Llv~~~D~ 568 (656)
|++.|.+.+.+ ..|||++.|+++ +++++++|.|+|+| |.+||++||||+|++.|++|+|++.|.|+
T Consensus 395 I~v~~~~~~~~---~~hpNtv~i~l~----------~~~~~~~v~G~s~gGg~~~I~~ing~~v~~~~~~~~li~~~~D~ 461 (525)
T TIGR01327 395 ITVEESKSESS---PDYKNYLSVTVT----------GDSGTVSVAGTVFGGFSPRIVEIDGFHVDLEPEGIMLIILHLDK 461 (525)
T ss_pred CEEEEEEccCC---CCCCCEEEEEEE----------eCCcEEEEEEEEecCCcEEEEEECCEEEEEecCccEEEEEecCc
Confidence 99999877644 489999999997 35678999999997 79999999999999999999999999999
Q ss_pred CCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHHhcCCCccEEEEEee
Q 006212 569 PGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTLLHV 632 (656)
Q Consensus 569 PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L~~~~~V~~v~~v~l 632 (656)
||+|++|+++|++++|||++|+++|..++++|+|++++|++++++++++|+++++|.++++++|
T Consensus 462 pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~~v~~~~l~~i~~~~~i~~v~~i~~ 525 (525)
T TIGR01327 462 PGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQPVPDEVLEEIKAIPDILSVFVVDL 525 (525)
T ss_pred CCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCCCCCHHHHHHHhcCCCccEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999999875
No 2
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=2.6e-107 Score=917.47 Aligned_cols=523 Identities=49% Similarity=0.746 Sum_probs=492.2
Q ss_pred CeEEEeCCCCHhHHHHhhcCC--cEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccc
Q 006212 91 PTILVSEKLGEAGLAILRSFG--NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVD 168 (656)
Q Consensus 91 ~~ilv~~~l~~~~~~~l~~~~--~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD 168 (656)
+||++++++.+..++.|++.. ++......+++++.+.++++|++++++.+++++++++++ |+||||+++|+|+||||
T Consensus 1 m~ili~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id 79 (526)
T PRK13581 1 MKVLVSDPISPAGLEILKDAPGVEVDVKTGLDKEELLEIIGDYDALIVRSATKVTAEVLEAA-KNLKVIGRAGVGVDNVD 79 (526)
T ss_pred CeEEEeCCCCHHHHHHHhccCCeEEEeCCCCCHHHHHHHhcCCCEEEEcCCCCCCHHHHhhC-CCCeEEEECCccccccc
Confidence 368999999998888888762 444444557889999999999999988789999999988 59999999999999999
Q ss_pred hhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHH
Q 006212 169 LQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRA 248 (656)
Q Consensus 169 ~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l 248 (656)
+++|+++||.|+|+|++|+.+||||++++||+++|+++++++.+++|+|.+..+.|.+|+||||||||+|+||+.+|+++
T Consensus 80 ~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l 159 (526)
T PRK13581 80 VPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRA 159 (526)
T ss_pred HHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998766678999999999999999999999999
Q ss_pred hcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHH
Q 006212 249 KGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEA 328 (656)
Q Consensus 249 k~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~a 328 (656)
++|||+|++|||+.+.+.+...|+..+++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||++||++|
T Consensus 160 ~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~a 239 (526)
T PRK13581 160 KAFGMKVIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAA 239 (526)
T ss_pred HhCCCEEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHH
Confidence 99999999999987666667778888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCCh
Q 006212 329 LVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPS 408 (656)
Q Consensus 329 L~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~Vn~p~~~~ 408 (656)
|+++|++|+|+||+||||+.||++ ++|||++|||++|||+|++|.|++++++..+++|+.+|++|+++.+.||.|.+++
T Consensus 240 L~~aL~~g~i~gAaLDVf~~EP~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~~~~~~ 318 (526)
T PRK13581 240 LAEALKSGKVAGAALDVFEKEPPT-DSPLFELPNVVVTPHLGASTAEAQENVAIQVAEQVIDALRGGPVPNAVNLPSITA 318 (526)
T ss_pred HHHHHhcCCeeEEEEecCCCCCCC-CchhhcCCCeeEcCccccchHHHHHHHHHHHHHHHHHHHcCCCcCceeeCCCCch
Confidence 999999999999999999999975 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccchHHHHHHHhHHHHHhhcCCCCceEEEEEEeecCCCCCcccccccHHHHHHhhhhhhhccccccchHhHhhcc
Q 006212 409 EVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQK 488 (656)
Q Consensus 409 ~~~~~l~p~~~laerlG~l~~qL~~g~~~~k~i~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~iAke~ 488 (656)
+.+++++||+++|+|||++++||+++ .+++++++|+|||+ .++. +++++|+++|+|+...++++|++||..+|||+
T Consensus 319 ~~~~~~~~~~~la~riG~~a~ql~~~--~~~~v~i~~~Gsfa-~t~~-~~~d~A~l~GlLg~~~dd~~~~~nA~~iA~e~ 394 (526)
T PRK13581 319 EEAEKLKPYLDLAEKLGSLAAQLADG--PIKSVEITYRGELA-EEDT-EPLTAAALKGLLSPVLGERVNYVNAPLLAKER 394 (526)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHcCC--CceEEEEEEecccc-cccc-cHHHHHHHHHhCccccCCCccccCHHHHHHHc
Confidence 99999999999999999999999988 89999999999998 7776 49999999999988776669999999999999
Q ss_pred CceEEEEEeecCCCCCCCCceEEEEEEecccccceecCCCcEEEEEEEEEC-CeeEEEEEcceeEEeecCccEEEEEecC
Q 006212 489 GLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKF-GIPHLTRVGSFGVDASLEGNLILCRQVD 567 (656)
Q Consensus 489 GI~v~~~~~~~~~~~~~~~ntv~i~l~~~~~~~~~~~~~~~~~~v~Gt~~g-G~~rI~~IdGf~V~~~g~~~~Llv~~~D 567 (656)
||+++|.+.+.+ ..|||++.|+++ +++++++|.|+|+| |.+||++||||+|++.|++|+|++.|.|
T Consensus 395 GI~~~~~~~~~~---~~hpNtv~i~l~----------~~~~~~~v~G~s~ggg~~~I~~ing~~v~~~~~~~~li~~~~D 461 (526)
T PRK13581 395 GIEVEESKSEES---PDYSNLITVTVT----------TDDGERSVAGTVFGDGEPRIVEIDGYRVDAKPEGHMLIIRNRD 461 (526)
T ss_pred CCEEEEEEecCC---CCCCCEEEEEEE----------eCCeEEEEEEEEecCCceEEEEECCEEEEeeCCceEEEEEeCC
Confidence 999999887644 489999999998 35678999999997 7899999999999999999999999999
Q ss_pred CCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHHhcCCCccEEEEEee
Q 006212 568 QPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTLLHV 632 (656)
Q Consensus 568 ~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L~~~~~V~~v~~v~l 632 (656)
+||+|++|+++|++++|||++|+++|..+++.|+|++++|++++++++++|+++++|.++++++|
T Consensus 462 ~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~~v~~~~l~~i~~~~~i~~~~~i~~ 526 (526)
T PRK13581 462 RPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDPVPEEVLEELRALPGILSAKAVEL 526 (526)
T ss_pred cCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCCCCCHHHHHHHhcCCCcceEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999975
No 3
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-87 Score=687.18 Aligned_cols=398 Identities=61% Similarity=0.871 Sum_probs=384.0
Q ss_pred CCeEEEeCCCCHhHHHHhhcCC-cEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccc
Q 006212 90 KPTILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVD 168 (656)
Q Consensus 90 ~~~ilv~~~l~~~~~~~l~~~~-~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD 168 (656)
+.+||+++++.+.+++.|++.+ +|++.+.++.||+.+.++++|++++|+.|++|+++|+.+..+||+|+|+|+|+||||
T Consensus 6 ~~~il~~e~~~~~~~~~l~~~g~~v~~~~~~~~eel~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~dNVD 85 (406)
T KOG0068|consen 6 MRKILVAESLDQACIEILKDNGYQVEFKKNLSLEELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGVDNVD 85 (406)
T ss_pred cceEEEecccchHHHHHHHhcCceEEEeccCCHHHHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCccccC
Confidence 3489999999999999999987 899999999999999999999999999999999999966679999999999999999
Q ss_pred hhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHH
Q 006212 169 LQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRA 248 (656)
Q Consensus 169 ~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l 248 (656)
+++|+++||.|+|+|.+|+.++|||+++|+++|+|+++++..++|+|+|++.++.|.+|+|||+||+|+|+||+.+|+++
T Consensus 86 L~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLgvlG~GrIGseVA~r~ 165 (406)
T KOG0068|consen 86 LKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLGVLGLGRIGSEVAVRA 165 (406)
T ss_pred hhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceeecceeeeEEeccEEEEeecccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHH
Q 006212 249 KGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEA 328 (656)
Q Consensus 249 k~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~a 328 (656)
+++||+|++|||..+.+.+...|++.++++|+++.||||++|||++|+|++|+|++.|++||+|+.|||++||++||+.|
T Consensus 166 k~~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~A 245 (406)
T KOG0068|consen 166 KAMGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPA 245 (406)
T ss_pred HhcCceEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhcCCeEEEEeeccCCCCCCC--CCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCC
Q 006212 329 LVRALDSGVVAQAALDVFTEEPPAK--DSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMV 406 (656)
Q Consensus 329 L~~aL~~g~i~gA~lDV~~~EP~~~--~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~Vn~p~~ 406 (656)
|++||++|+++||++|||+.||+.. ++.|..+|||++|||+|++|.|+|.+++.++++++.+|++| .....||.|.+
T Consensus 246 Lv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iaievaea~~~~~~~-~~~g~Vna~~v 324 (406)
T KOG0068|consen 246 LVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYING-NSAGSVNAPEV 324 (406)
T ss_pred HHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHHHHHHHHHHHHhcc-Cccceechhhh
Confidence 9999999999999999999999754 78999999999999999999999999999999999999999 77899999999
Q ss_pred ChhhhhhccchHHHHHHHhHHHHHhhcCCCCceEEEEEEeecCCCCCcccccccHHHHHHhhhhhhhccccccchHhHhh
Q 006212 407 PSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAK 486 (656)
Q Consensus 407 ~~~~~~~l~p~~~laerlG~l~~qL~~g~~~~k~i~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~iAk 486 (656)
+++.+++++||+.+++++||++.|++.|++++..+..+|.+.. +.+++.+.+.+.+|+.+++.+-.+|++|++.++|
T Consensus 325 ~~~~l~~~~~~~~~a~~l~r~~~~~~~~~~~~~~~~~~~~s~~---~~d~~~l~A~i~~~~~e~i~~~~~nLvn~~~~~k 401 (406)
T KOG0068|consen 325 ALESLTELKPNIVLAEKLGRLVPGVLKGVNGVLSVHNIYKSFS---DGDIALLRADISKGIIEPIKDIYVNLVNADAKAK 401 (406)
T ss_pred hhhhhhccCchhHHHHHHhhhhHHHhcCCccceeeeehhhhcc---ccceeeeHHHHhccCcchHHHHHHHHhccchhhh
Confidence 9999999999999999999999999999888888888887654 4789999999999999999999999999999999
Q ss_pred ccCce
Q 006212 487 QKGLR 491 (656)
Q Consensus 487 e~GI~ 491 (656)
+||++
T Consensus 402 ~r~l~ 406 (406)
T KOG0068|consen 402 QRGLY 406 (406)
T ss_pred hhccC
Confidence 99974
No 4
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=2e-73 Score=623.73 Aligned_cols=392 Identities=32% Similarity=0.491 Sum_probs=351.6
Q ss_pred CCCeEEEeCCCCHhHHHHhhcC-C-cEEEe-cCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccC
Q 006212 89 PKPTILVSEKLGEAGLAILRSF-G-NVECL-YDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGID 165 (656)
Q Consensus 89 ~~~~ilv~~~l~~~~~~~l~~~-~-~v~~~-~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD 165 (656)
.|++|++++.+.+...+.|++. . ++... ...+++++.+.+.++|++++++.+++++++++++ |+||+|+++|+|+|
T Consensus 9 ~~~~ili~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d 87 (409)
T PRK11790 9 DKIKFLLLEGVHQSAVEVLRAAGYTNIEYHKGALDEEELIEAIKDAHFIGIRSRTQLTEEVLAAA-EKLVAIGCFCIGTN 87 (409)
T ss_pred CCeEEEEECCCCHHHHHHHHhcCCceEEECCCCCCHHHHHHHcCCCCEEEEeCCCCCCHHHHhhC-CCCeEEEECceecc
Confidence 4678999999999888888765 3 55443 2357788999999999998887788999999988 59999999999999
Q ss_pred ccchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHH
Q 006212 166 NVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVA 245 (656)
Q Consensus 166 ~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA 245 (656)
|||+++|+++||.|+|+||+|+.+||||++++||+++|+++++++.+++|+|.+..+.|.+|+|||+||||+|+||+.+|
T Consensus 88 ~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG~G~IG~~vA 167 (409)
T PRK11790 88 QVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQLS 167 (409)
T ss_pred cccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEECCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999765668999999999999999999999
Q ss_pred HHHhcCCCEEEEECCCCChhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchh
Q 006212 246 RRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI 324 (656)
Q Consensus 246 ~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~iv 324 (656)
+++++|||+|++|||+... ...++..+ ++++++++||+|++|+|+|++|++++|++.|++||+|++|||+|||++|
T Consensus 168 ~~~~~fGm~V~~~d~~~~~---~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~v 244 (409)
T PRK11790 168 VLAESLGMRVYFYDIEDKL---PLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVV 244 (409)
T ss_pred HHHHHCCCEEEEECCCccc---ccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCccc
Confidence 9999999999999986421 11234444 8999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHhHhcCCeEEEEeeccCCCCCCC----CCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcc
Q 006212 325 DEEALVRALDSGVVAQAALDVFTEEPPAK----DSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATA 400 (656)
Q Consensus 325 de~aL~~aL~~g~i~gA~lDV~~~EP~~~----~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~ 400 (656)
|++||+++|++|+|+||++|||+.||++. ++|||.+||+++|||+|++|.|++++++..+++|+.+|++|+.+.+.
T Consensus 245 de~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~~~~~~~~ 324 (409)
T PRK11790 245 DIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEAQENIGLEVAGKLVKYSDNGSTLSA 324 (409)
T ss_pred CHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHHHHHHHHHHHHHHHHHHHcCCCcCcc
Confidence 99999999999999999999999999876 36999999999999999999999999999999999999999888888
Q ss_pred ccCCCCChhhhhhccchHHHHHHHhHHHHHhhcCCCCceEEEEEEeecCCCCCcccccccHHHHHHhhhhhhhccccccc
Q 006212 401 INAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVN 480 (656)
Q Consensus 401 Vn~p~~~~~~~~~l~p~~~laerlG~l~~qL~~g~~~~k~i~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vN 480 (656)
||.| +
T Consensus 325 vn~~---------------------------------------------------------------------~------ 329 (409)
T PRK11790 325 VNFP---------------------------------------------------------------------E------ 329 (409)
T ss_pred eecc---------------------------------------------------------------------c------
Confidence 8863 0
Q ss_pred hHhHhhccCceEEEEEeecCCCCCCCCceEEEEEEecccccceecCCCcEEEEEEEEECCeeEEEEEcceeEEeecCccE
Q 006212 481 ADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKFGIPHLTRVGSFGVDASLEGNL 560 (656)
Q Consensus 481 A~~iAke~GI~v~~~~~~~~~~~~~~~ntv~i~l~~~~~~~~~~~~~~~~~~v~Gt~~gG~~rI~~IdGf~V~~~g~~~~ 560 (656)
+. .. +....|.
T Consensus 330 -----------~~---~~-------------------------------------------------------~~~~~~r 340 (409)
T PRK11790 330 -----------VS---LP-------------------------------------------------------EHPGGHR 340 (409)
T ss_pred -----------cc---cC-------------------------------------------------------CCCCCce
Confidence 00 00 0012567
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHHhcCCCccEEEEE
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTLL 630 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L~~~~~V~~v~~v 630 (656)
|++.|+|+||+|++|+++|++++|||++|++.|. ++.|+|+|++|+.++++++++|+++++|.+|+++
T Consensus 341 lii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~--~~~A~~iie~D~~~~~~~~~~i~~i~~v~~v~~~ 408 (409)
T PRK11790 341 LLHIHENRPGVLAAINQIFAEQGINIAAQYLQTD--GEIGYVVIDVDADYAEEALDALKAIPGTIRARLL 408 (409)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccC--CCEEEEEEEeCCCCcHHHHHHHHcCCCeEEEEEe
Confidence 8889999999999999999999999999999754 4999999999999999999999999999999876
No 5
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-70 Score=583.18 Aligned_cols=316 Identities=48% Similarity=0.693 Sum_probs=292.9
Q ss_pred CCCeEEEeCCCCHhHHHHhhcCC--cEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCc
Q 006212 89 PKPTILVSEKLGEAGLAILRSFG--NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDN 166 (656)
Q Consensus 89 ~~~~ilv~~~l~~~~~~~l~~~~--~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~ 166 (656)
.++++++++.+.+..++.+.... ++......+.+++.+.+.++|++++ +.+++++++++.+ ++||+|+++|+|+||
T Consensus 2 ~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~-~~~~v~~~~l~~~-~~Lk~I~~~g~Gvd~ 79 (324)
T COG0111 2 MMIKVLVTDPLAPDALEELLAAYDVEVPDGPDLDEEELLEALADADALIV-SVTPVTEEVLAAA-PNLKAIGRAGAGVDN 79 (324)
T ss_pred CcceeeccCccCHHHHHHHHhccccccccccccchHHHHhhcccCcEEEE-ecCCCCHHHHhhC-CCceEEEEccccccc
Confidence 47889999999999999887642 2333345678889999999999999 8899999999998 599999999999999
Q ss_pred cchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHH
Q 006212 167 VDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVAR 246 (656)
Q Consensus 167 iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~ 246 (656)
||+++|+++||.|+|+|++|+.+||||++++||+++|+++.+++++++|.|++..+.|.+|+||||||||+|+||+.+|+
T Consensus 80 id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~ 159 (324)
T COG0111 80 IDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAK 159 (324)
T ss_pred cCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999778899999999999999999999999
Q ss_pred HHhcCCCEEEEECCCCChhHHHHcCCe-ecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhc
Q 006212 247 RAKGLGMNVIAHDPYAPADKARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVID 325 (656)
Q Consensus 247 ~lk~~G~~Vi~~d~~~~~~~a~~~g~~-~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivd 325 (656)
++++|||+|++|||+.+.+.+...++. ..+|++++++||||++|+|+|++|++|||++.|++||+|++|||||||++||
T Consensus 160 ~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVd 239 (324)
T COG0111 160 RLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVD 239 (324)
T ss_pred HHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceec
Confidence 999999999999998766655555655 4579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCC
Q 006212 326 EEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPM 405 (656)
Q Consensus 326 e~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~Vn~p~ 405 (656)
++||++||++|+|+||+||||+.||++.++|||++|||++|||+|++|.|++++++.++++|+.+|++|..+.+ |.|.
T Consensus 240 e~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~~~~~~~~~i~~~l~g~~~~~--~~~~ 317 (324)
T COG0111 240 EDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRYLAGGPVVN--NAPE 317 (324)
T ss_pred HHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHHHHHHHHHHHHHHHcCCCCCC--Cccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877 6665
Q ss_pred CCh
Q 006212 406 VPS 408 (656)
Q Consensus 406 ~~~ 408 (656)
++.
T Consensus 318 v~~ 320 (324)
T COG0111 318 VDL 320 (324)
T ss_pred ccc
Confidence 543
No 6
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=6.1e-68 Score=563.97 Aligned_cols=312 Identities=30% Similarity=0.501 Sum_probs=288.4
Q ss_pred CCeEEEeCCCCHhHHHHhhcCCcEEEec---CCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCc
Q 006212 90 KPTILVSEKLGEAGLAILRSFGNVECLY---DLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDN 166 (656)
Q Consensus 90 ~~~ilv~~~l~~~~~~~l~~~~~v~~~~---~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~ 166 (656)
+++||+++++++...+.|++..++.... ..+.+++.+.+.++|++|+++ .++++++++++ |+||+|+++|+|+||
T Consensus 2 ~~~vl~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~ad~li~~~-~~~~~~~l~~~-p~Lk~I~~~g~G~d~ 79 (323)
T PRK15409 2 KPSVILYKALPDDLLQRLEEHFTVTQVANLSPETVEQHAAAFAEAEGLLGSG-EKVDAALLEKM-PKLRAASTISVGYDN 79 (323)
T ss_pred CceEEEeCCCCHHHHHHHHhcCcEEEcCCCCCCCHHHHHHHhcCCeEEEEcC-CCCCHHHHhhC-CCCeEEEECceeccc
Confidence 5789999999988888888766665432 235678889999999999864 58999999988 599999999999999
Q ss_pred cchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccc---cccccccCCCEEEEEecChhHHH
Q 006212 167 VDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS---KYVGVSLVGKTLAVMGFGKVGSE 243 (656)
Q Consensus 167 iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~---~~~g~~l~gktvGIIGlG~IG~~ 243 (656)
||+++|+++||.|+|+|++|+.+||||+++|||+++|+++++++.+++|+|... .+.|.+|+|||+||||+|+||+.
T Consensus 80 id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~ 159 (323)
T PRK15409 80 FDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMA 159 (323)
T ss_pred ccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHH
Confidence 999999999999999999999999999999999999999999999999999743 23588999999999999999999
Q ss_pred HHHHHh-cCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 006212 244 VARRAK-GLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGG 322 (656)
Q Consensus 244 vA~~lk-~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ 322 (656)
+|++++ +|||+|++|||+...+.....++.++++++++++||+|++|+|+|++|+++||++.|++||||++|||+|||+
T Consensus 160 va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ 239 (323)
T PRK15409 160 LAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGP 239 (323)
T ss_pred HHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCcc
Confidence 999998 9999999999986554445667888899999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 006212 323 VIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAIN 402 (656)
Q Consensus 323 ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~Vn 402 (656)
+||++||+++|++|+|+||+||||+.||++.++|||++||+++|||+|+.|.|++.++...+++|+.+|++|+++.+.||
T Consensus 240 vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn 319 (323)
T PRK15409 240 VVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYNMAACAVDNLIDALQGKVEKNCVN 319 (323)
T ss_pred ccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcccC
Confidence 99999999999999999999999999999889999999999999999999999999999999999999999999999988
Q ss_pred C
Q 006212 403 A 403 (656)
Q Consensus 403 ~ 403 (656)
.
T Consensus 320 ~ 320 (323)
T PRK15409 320 P 320 (323)
T ss_pred c
Confidence 4
No 7
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=2.3e-66 Score=550.10 Aligned_cols=313 Identities=38% Similarity=0.597 Sum_probs=289.6
Q ss_pred CCeEEEeCCCCHhHHHHhhcCCcEEEecCC--CHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcc
Q 006212 90 KPTILVSEKLGEAGLAILRSFGNVECLYDL--SPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNV 167 (656)
Q Consensus 90 ~~~ilv~~~l~~~~~~~l~~~~~v~~~~~~--~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~i 167 (656)
|++++.+.++++...+.+.+.+++...... ...++.+..+++|++++...+++++++++++ |+||+|+..|+|||||
T Consensus 2 k~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~l~~~-p~LKlIa~~~~G~D~v 80 (324)
T COG1052 2 KIVVLSTRKLPPEVLERLKEKFEVERYEDDLTPDTELAERLKDADAVITFVNDRIDAEVLEKL-PGLKLIATRSAGYDNV 80 (324)
T ss_pred CcEEEecCcCCHHHHHHhhccEEEEEeccCCccchHHHHHhcCCcEEEEcCCCCcCHHHHHhC-CCcEEEEEeccccCcc
Confidence 677999999999988888887666554322 1116788899999999987788999999998 6999999999999999
Q ss_pred chhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHcccccccc----ccccccCCCEEEEEecChhHHH
Q 006212 168 DLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSK----YVGVSLVGKTLAVMGFGKVGSE 243 (656)
Q Consensus 168 D~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~----~~g~~l~gktvGIIGlG~IG~~ 243 (656)
|+++|+++||.|+|+|++++++||||+++|||++.|++.++++.+|+|+|.... ..|.+++|||+||||+|+||++
T Consensus 81 Dl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~a 160 (324)
T COG1052 81 DLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQA 160 (324)
T ss_pred cHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999864 5788999999999999999999
Q ss_pred HHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCch
Q 006212 244 VARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323 (656)
Q Consensus 244 vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~i 323 (656)
+|+++++|||+|++||++...+..+..++.++++++++++||+|++|||+|++|+|+||++.|++||+|++|||+|||++
T Consensus 161 vA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~ 240 (324)
T COG1052 161 VARRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGL 240 (324)
T ss_pred HHHHHhcCCCEEEEECCCCChHHHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccc
Confidence 99999999999999999876555566668888999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCc---EEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcc
Q 006212 324 IDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHEN---VTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATA 400 (656)
Q Consensus 324 vde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~n---vilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~ 400 (656)
||++||++||++|+|+|||+|||+.||...+++|+.++| +++|||+|+.|.|++.+|+..+++|+.+|++|+.+.+.
T Consensus 241 VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~~g~~~~~~ 320 (324)
T COG1052 241 VDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDGGVPPNE 320 (324)
T ss_pred cCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 999999999999999999999999999877899998777 99999999999999999999999999999999999888
Q ss_pred ccC
Q 006212 401 INA 403 (656)
Q Consensus 401 Vn~ 403 (656)
|+.
T Consensus 321 v~~ 323 (324)
T COG1052 321 VNP 323 (324)
T ss_pred CCC
Confidence 874
No 8
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=3.7e-65 Score=540.65 Aligned_cols=298 Identities=29% Similarity=0.486 Sum_probs=271.5
Q ss_pred eEEEeCC--CCHhHHHHhhcCCcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccch
Q 006212 92 TILVSEK--LGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDL 169 (656)
Q Consensus 92 ~ilv~~~--l~~~~~~~l~~~~~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~ 169 (656)
||++.+. +.+..++.|++.+++......+++++.+.+.++|+++++ .+++++++++++ |+||+|+++|+|+||||+
T Consensus 2 ki~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~ 79 (311)
T PRK08410 2 KIVILDAKTLGDKDLSVFEEFGDFQIYPTTSPEEVIERIKDANIIITN-KVVIDKEVLSQL-PNLKLICITATGTNNVDI 79 (311)
T ss_pred eEEEEecCCCChhhHHHHhhCceEEEeCCCCHHHHHHHhCCCCEEEEC-CCCCCHHHHhhC-CCCeEEEEcccccccccH
Confidence 4777776 667778888876666554444678899999999999886 468999999998 599999999999999999
Q ss_pred hhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccc------cccccCCCEEEEEecChhHHH
Q 006212 170 QAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKY------VGVSLVGKTLAVMGFGKVGSE 243 (656)
Q Consensus 170 ~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~------~g~~l~gktvGIIGlG~IG~~ 243 (656)
++|+++||.|+|+||+|+.+||||+++|||+++|+++.+++.+++|+|.+... .+.+|+|||+||||+|+||+.
T Consensus 80 ~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~ 159 (311)
T PRK08410 80 EYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKR 159 (311)
T ss_pred HHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHH
Confidence 99999999999999999999999999999999999999999999999985421 257999999999999999999
Q ss_pred HHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCch
Q 006212 244 VARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323 (656)
Q Consensus 244 vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~i 323 (656)
+|+++++|||+|++|||+... ...++..+++++++++||+|++|+|+|++|+++||++.|++||||++|||+|||++
T Consensus 160 vA~~~~~fgm~V~~~d~~~~~---~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~v 236 (311)
T PRK08410 160 VAKIAQAFGAKVVYYSTSGKN---KNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGI 236 (311)
T ss_pred HHHHHhhcCCEEEEECCCccc---cccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccc
Confidence 999999999999999997532 12456778999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccC---CcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCC
Q 006212 324 IDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQH---ENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGE 395 (656)
Q Consensus 324 vde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~---~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~ 395 (656)
||++||++||++|+|+ |+||||+.||++.++|||.+ ||||+|||+|++|.|+++++...+++|+.+|++|+
T Consensus 237 VDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e~~~~~~~~~~~nl~~~~~g~ 310 (311)
T PRK08410 237 VNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEARKTLIEKVKENIKDFLEGG 310 (311)
T ss_pred cCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999 99999999999999999986 89999999999999999999999999999999886
No 9
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=1e-64 Score=541.94 Aligned_cols=312 Identities=38% Similarity=0.633 Sum_probs=286.9
Q ss_pred CCeEEEeCCCCHhHHHHhhcCCcEEEec---CCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCc
Q 006212 90 KPTILVSEKLGEAGLAILRSFGNVECLY---DLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDN 166 (656)
Q Consensus 90 ~~~ilv~~~l~~~~~~~l~~~~~v~~~~---~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~ 166 (656)
|+||++++++++...+.|++..++.... ..+.+++.+.++++|++++++.+++++++++++ |+||||+++|+|+||
T Consensus 2 ~~kil~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-p~Lk~I~~~~~G~d~ 80 (333)
T PRK13243 2 KPKVFITREIPENGIEMLEEHFEVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDCEVFEAA-PRLRIVANYAVGYDN 80 (333)
T ss_pred CceEEEECCCCHHHHHHHhcCceEEEecCCCCCCHHHHHHHhCCCcEEEEeCCCCCCHHHHhhC-CCCeEEEecCccccc
Confidence 5889999999888888887765554332 246788999999999999987678999999998 599999999999999
Q ss_pred cchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHcccccccc-------ccccccCCCEEEEEecCh
Q 006212 167 VDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSK-------YVGVSLVGKTLAVMGFGK 239 (656)
Q Consensus 167 iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~-------~~g~~l~gktvGIIGlG~ 239 (656)
||+++|+++||.|+|+||+|+.+||||++++||+++|+++.+++.+++|.|.+.. +.|.+|+||||||||+|+
T Consensus 81 id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~ 160 (333)
T PRK13243 81 IDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGR 160 (333)
T ss_pred cCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCH
Confidence 9999999999999999999999999999999999999999999999999997521 257899999999999999
Q ss_pred hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 006212 240 VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 240 IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINva 319 (656)
||+.+|++|++|||+|++||++.........++...++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|
T Consensus 161 IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~a 240 (333)
T PRK13243 161 IGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTA 240 (333)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECc
Confidence 99999999999999999999986544445567777899999999999999999999999999999999999999999999
Q ss_pred CCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 006212 320 RGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSAT 399 (656)
Q Consensus 320 Rg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~ 399 (656)
||+++|+++|+++|++|+|+||+||||+.||++ ++|||++|||++|||+|++|.|++.++...+++|+.+|++|+++.+
T Consensus 241 Rg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~ 319 (333)
T PRK13243 241 RGKVVDTKALVKALKEGWIAGAGLDVFEEEPYY-NEELFSLKNVVLAPHIGSATFEAREGMAELVAENLIAFKRGEVPPT 319 (333)
T ss_pred CchhcCHHHHHHHHHcCCeEEEEeccCCCCCCC-CchhhcCCCEEECCcCCcCHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 999999999999999999999999999999987 8999999999999999999999999999999999999999998888
Q ss_pred cccC
Q 006212 400 AINA 403 (656)
Q Consensus 400 ~Vn~ 403 (656)
.||.
T Consensus 320 ~v~~ 323 (333)
T PRK13243 320 LVNR 323 (333)
T ss_pred ccCH
Confidence 8874
No 10
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=9.8e-64 Score=531.09 Aligned_cols=302 Identities=30% Similarity=0.469 Sum_probs=269.0
Q ss_pred eEEEeCCC----CHhHHHHhhcC-CcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCc
Q 006212 92 TILVSEKL----GEAGLAILRSF-GNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDN 166 (656)
Q Consensus 92 ~ilv~~~l----~~~~~~~l~~~-~~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~ 166 (656)
||++++.. .+...+.|++. .++.+....+++++.+.+.++|+++++ .+++++++++++ |+||+|+++|+|+||
T Consensus 2 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~-~~Lk~I~~~~~G~d~ 79 (317)
T PRK06487 2 RAVFLDHDSLDLGDLDLSPLEQAFDELQLHDATTPEQVAERLRGAQVAISN-KVALDAAALAAA-PQLKLILVAATGTNN 79 (317)
T ss_pred eEEEEccccCCccccchhHHHhhCCeEEEecCCCHHHHHHHhCCCeEEEEe-CCCCCHHHHhhC-CCCeEEEEcCccccc
Confidence 46666552 23445666643 455555555678899999999998875 468999999988 599999999999999
Q ss_pred cchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHcccccccc------ccccccCCCEEEEEecChh
Q 006212 167 VDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSK------YVGVSLVGKTLAVMGFGKV 240 (656)
Q Consensus 167 iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~------~~g~~l~gktvGIIGlG~I 240 (656)
||+++|+++||.|+|+||+|+.+||||++++||+++|+++++++.+++|+|.+.. +.+.+|+|||+||||+|+|
T Consensus 80 id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~I 159 (317)
T PRK06487 80 VDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGEL 159 (317)
T ss_pred cCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHH
Confidence 9999999999999999999999999999999999999999999999999998642 2357899999999999999
Q ss_pred HHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 006212 241 GSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 241 G~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaR 320 (656)
|+.+|+++++|||+|++||++.... ....++|++++++||+|++|+|+|++|+++||++.|++||+|++|||+||
T Consensus 160 G~~vA~~l~~fgm~V~~~~~~~~~~-----~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aR 234 (317)
T PRK06487 160 GGAVARLAEAFGMRVLIGQLPGRPA-----RPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTAR 234 (317)
T ss_pred HHHHHHHHhhCCCEEEEECCCCCcc-----cccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCC
Confidence 9999999999999999999864221 23456899999999999999999999999999999999999999999999
Q ss_pred CchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCcccc--CCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 006212 321 GGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQ--HENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSA 398 (656)
Q Consensus 321 g~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~--~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~ 398 (656)
|++||++||++||++|+|+||+||||+.||++.++|||. +||+++|||+|++|.|+++++...+++|+.+|++|++.
T Consensus 235 G~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~- 313 (317)
T PRK06487 235 GGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFFAGKPL- 313 (317)
T ss_pred ccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCCC-
Confidence 999999999999999999999999999999988899995 89999999999999999999999999999999999754
Q ss_pred ccc
Q 006212 399 TAI 401 (656)
Q Consensus 399 ~~V 401 (656)
++|
T Consensus 314 ~~v 316 (317)
T PRK06487 314 RVV 316 (317)
T ss_pred cCC
Confidence 444
No 11
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=3.4e-62 Score=529.77 Aligned_cols=314 Identities=33% Similarity=0.432 Sum_probs=280.3
Q ss_pred CCCCeEEEeCCCCHh-HHHHhhcC-CcEEEec----CCCHhHHHhhc-CCCeEEEEcCCCCCCHHHHHhcCC-cceeEEe
Q 006212 88 TPKPTILVSEKLGEA-GLAILRSF-GNVECLY----DLSPEALCEKI-SQCDALIVRSGTKVTRSVFEAANG-KLKVVGR 159 (656)
Q Consensus 88 ~~~~~ilv~~~l~~~-~~~~l~~~-~~v~~~~----~~~~eel~~~i-~~~d~liv~~~~~v~~e~l~~~~~-~LK~I~~ 159 (656)
..|++|+++.++.++ .++.|++. .++.... ..+.+++.+.+ .++|+++++..++++++++++++. +||+|++
T Consensus 13 ~~~~~v~~~~~~~~~~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~lk~I~~ 92 (386)
T PLN02306 13 NGKYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGGKAFSN 92 (386)
T ss_pred CCCceEEEeCCCCcHHHHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCceEEEE
Confidence 468999999999874 67888765 4665422 25788898887 579999998777899999999852 4799999
Q ss_pred cccccCccchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccc---cccccccCCCEEEEEe
Q 006212 160 AGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS---KYVGVSLVGKTLAVMG 236 (656)
Q Consensus 160 ~g~GvD~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~---~~~g~~l~gktvGIIG 236 (656)
.|+|+||||+++|+++||.|+|+||+++.+||||+++|||+++|+++++++.+++|+|.+. ...|.+|.||||||||
T Consensus 93 ~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG 172 (386)
T PLN02306 93 MAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIG 172 (386)
T ss_pred CCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999998642 2357899999999999
Q ss_pred cChhHHHHHHHHh-cCCCEEEEECCCCChhHH---HHcC------------Cee-cCHHHHhccCCEEEEccCCCccccc
Q 006212 237 FGKVGSEVARRAK-GLGMNVIAHDPYAPADKA---RAVG------------VEL-VSFDQALATADFISLHMPLNPTTSK 299 (656)
Q Consensus 237 lG~IG~~vA~~lk-~~G~~Vi~~d~~~~~~~a---~~~g------------~~~-~~l~ell~~aDvV~l~~Plt~~T~~ 299 (656)
+|.||+.+|++++ +|||+|++|||+...+.. ...| +.. .+|++++++||+|++|+|+|++|++
T Consensus 173 ~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~ 252 (386)
T PLN02306 173 AGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYH 252 (386)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhh
Confidence 9999999999985 999999999998642211 1111 122 4899999999999999999999999
Q ss_pred cccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHH
Q 006212 300 IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEG 379 (656)
Q Consensus 300 li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~ 379 (656)
|||++.|++||+|++|||+|||++||++||+++|++|+|.||+||||+.||++ +++||++|||++|||+|++|.+++++
T Consensus 253 lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~-~~~L~~~pNVilTPHiag~T~e~~~~ 331 (386)
T PLN02306 253 LINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYM-KPGLADMKNAVVVPHIASASKWTREG 331 (386)
T ss_pred hcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCC-cchHhhCCCEEECCccccCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999974 67899999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCcccc
Q 006212 380 VAIEIAEAVVGALRGELSATAIN 402 (656)
Q Consensus 380 ~~~~~~~~i~~~l~g~~~~~~Vn 402 (656)
+...+++|+.+|++|+++.+.||
T Consensus 332 ~~~~~~~ni~~~~~g~~~~~~~~ 354 (386)
T PLN02306 332 MATLAALNVLGKLKGYPVWGDPN 354 (386)
T ss_pred HHHHHHHHHHHHHcCCCCccccc
Confidence 99999999999999999999999
No 12
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=2.2e-62 Score=519.91 Aligned_cols=273 Identities=31% Similarity=0.476 Sum_probs=251.9
Q ss_pred CCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccchhhHHhcCceeecCCCCChhhHHHHHHHH
Q 006212 118 DLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIAL 197 (656)
Q Consensus 118 ~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal 197 (656)
..+++++.+.++++|++++. .+++++++++++ |+||+|+++|+|+||||+++|+++||.|+|+||+|+.+||||++++
T Consensus 32 ~~~~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l 109 (314)
T PRK06932 32 HTSAEQTIERAKDADIVITS-KVLFTRETLAQL-PKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGM 109 (314)
T ss_pred CCChHHHHHHhCCCcEEEEe-CCCCCHHHHhhC-cCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHH
Confidence 45688899999999988874 568999999988 5999999999999999999999999999999999999999999999
Q ss_pred HHHHHhchhHHHHHHHcccccccc------ccccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcC
Q 006212 198 LASMARNVSQADASIKAGKWLRSK------YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG 271 (656)
Q Consensus 198 ~L~~~R~i~~~~~~~~~g~W~~~~------~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g 271 (656)
||+++|+++.+++.+++|+|.+.. +.+.+|+|||+||||+|.||+.+|+++++|||+|++||++.... ..
T Consensus 110 ~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~----~~ 185 (314)
T PRK06932 110 IFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASV----CR 185 (314)
T ss_pred HHHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccc----cc
Confidence 999999999999999999997532 23578999999999999999999999999999999999764211 12
Q ss_pred CeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCC
Q 006212 272 VELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPP 351 (656)
Q Consensus 272 ~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~ 351 (656)
..+.+|++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||+++|++|+|+||+||||+.||+
T Consensus 186 ~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~ 265 (314)
T PRK06932 186 EGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPP 265 (314)
T ss_pred cccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCC
Confidence 23568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccc----cCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 006212 352 AKDSKLV----QHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGEL 396 (656)
Q Consensus 352 ~~~~~L~----~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~ 396 (656)
+.++||| ++|||++|||+|++|.|+++++...+++|+.+|++|+.
T Consensus 266 ~~~~pl~~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g~ 314 (314)
T PRK06932 266 EKDNPLIQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQGK 314 (314)
T ss_pred CCCChhhHhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8899998 48999999999999999999999999999999998763
No 13
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=1.9e-61 Score=519.10 Aligned_cols=308 Identities=26% Similarity=0.394 Sum_probs=273.5
Q ss_pred CCCCCeEEEeCCCCHhH----HHHhhcCCcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEeccc
Q 006212 87 VTPKPTILVSEKLGEAG----LAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGV 162 (656)
Q Consensus 87 ~~~~~~ilv~~~l~~~~----~~~l~~~~~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~ 162 (656)
.++|||||++.+..+.. .+.++... +......+.+|+.+.++++|+++++ ..++++++++++ |+||+|+++|+
T Consensus 15 ~~~~~~vl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~~~~~~~d~~i~~-~~~~~~~~l~~~-~~Lk~I~~~~~ 91 (347)
T PLN02928 15 DMRPTRVLFCGPEFPASYSYTREYLQKYP-FIQVDAVAREDVPDVIANYDICVPK-MMRLDADIIARA-SQMKLIMQFGV 91 (347)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHhhcCC-eeEecCCCHHHHHHHhcCCcEEEEC-CCCCCHHHHhcC-CCceEEEECCc
Confidence 45688999998887753 34443333 3333345778899999999998876 458999999987 59999999999
Q ss_pred ccCccchhhHHhcCceeecCCCC---ChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecCh
Q 006212 163 GIDNVDLQAATEFGCLVVNAPIA---NTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGK 239 (656)
Q Consensus 163 GvD~iD~~aa~~~GI~V~n~p~~---n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~ 239 (656)
|+||||+++|.++||.|+|+|++ |+.+||||++++||+++|++..+++.+++|.|.+ ..+.+|+|||+||||+|.
T Consensus 92 G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~--~~~~~l~gktvGIiG~G~ 169 (347)
T PLN02928 92 GLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE--PIGDTLFGKTVFILGYGA 169 (347)
T ss_pred ccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc--ccccCCCCCEEEEECCCH
Confidence 99999999999999999999985 7899999999999999999999999999999975 357899999999999999
Q ss_pred hHHHHHHHHhcCCCEEEEECCCCChhHHHH-------------cCCeecCHHHHhccCCEEEEccCCCccccccccHHHH
Q 006212 240 VGSEVARRAKGLGMNVIAHDPYAPADKARA-------------VGVELVSFDQALATADFISLHMPLNPTTSKIFNDETF 306 (656)
Q Consensus 240 IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~-------------~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l 306 (656)
||+.+|++|++|||+|++|||+........ .+....++++++++||+|++|+|+|++|+++|+++.|
T Consensus 170 IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l 249 (347)
T PLN02928 170 IGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFL 249 (347)
T ss_pred HHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHH
Confidence 999999999999999999999743222111 1124568999999999999999999999999999999
Q ss_pred hcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHH
Q 006212 307 AKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAE 386 (656)
Q Consensus 307 ~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~ 386 (656)
++||+|++|||+|||++||++||++||++|+|+||+||||+.||++.++|||++||+++|||+|+.|.++++++...+++
T Consensus 250 ~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~~~~~~~~ 329 (347)
T PLN02928 250 SSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRSMGKIVGD 329 (347)
T ss_pred hcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCc
Q 006212 387 AVVGALRGELSAT 399 (656)
Q Consensus 387 ~i~~~l~g~~~~~ 399 (656)
|+.+|++|+++.+
T Consensus 330 nl~~~~~g~~~~~ 342 (347)
T PLN02928 330 AALQLHAGRPLTG 342 (347)
T ss_pred HHHHHHCCCCCCc
Confidence 9999999987644
No 14
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=7.3e-61 Score=518.06 Aligned_cols=295 Identities=29% Similarity=0.396 Sum_probs=267.7
Q ss_pred hHHHHhhcCC-cEEEec--CCCHhHHHhhcCCCeEEEEcCC--CCCCHHHHHhcCCcceeEEecccccCccchhhHHhcC
Q 006212 102 AGLAILRSFG-NVECLY--DLSPEALCEKISQCDALIVRSG--TKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFG 176 (656)
Q Consensus 102 ~~~~~l~~~~-~v~~~~--~~~~eel~~~i~~~d~liv~~~--~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~~aa~~~G 176 (656)
...+.|++.+ ++.... ..+++++.+.++++|++|+... +++++++++++ |+||+|+++|+|+||||+++|+++|
T Consensus 66 ~~~~~l~~~g~~~v~~~~~~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~a-p~LK~I~~~g~G~D~iDl~aa~~~g 144 (386)
T PLN03139 66 GIRDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLITTPFHPAYVTAERIKKA-KNLELLLTAGIGSDHIDLPAAAAAG 144 (386)
T ss_pred cHHHHHHhcCCeEEEeCCCCCCHHHHHHHhCCCeEEEEcCccCCCCCHHHHhhC-CCccEEEECCccccccCHHHHHHCC
Confidence 3345566663 444432 2466788999999999998642 47999999998 5999999999999999999999999
Q ss_pred ceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHcccccccc--ccccccCCCEEEEEecChhHHHHHHHHhcCCCE
Q 006212 177 CLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSK--YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMN 254 (656)
Q Consensus 177 I~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~--~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~ 254 (656)
|.|+|+||+|+.+||||++++||++.|++.++++.+++|.|.... ..+.+|.||||||||+|+||+.+|++|++|||+
T Consensus 145 I~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~ 224 (386)
T PLN03139 145 LTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCN 224 (386)
T ss_pred eEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCE
Confidence 999999999999999999999999999999999999999998532 357899999999999999999999999999999
Q ss_pred EEEECCCC-ChhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHh
Q 006212 255 VIAHDPYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRA 332 (656)
Q Consensus 255 Vi~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~a 332 (656)
|++||++. +.+...+.|+..+ ++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||++||++||+++
T Consensus 225 V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~A 304 (386)
T PLN03139 225 LLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADA 304 (386)
T ss_pred EEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHH
Confidence 99999975 4444556677665 899999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 006212 333 LDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELS 397 (656)
Q Consensus 333 L~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~ 397 (656)
|++|+|+||++|||+.||++.++|||.+||+++|||+|+.|.+++++++..+++|+.+|++|++.
T Consensus 305 L~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~~G~~~ 369 (386)
T PLN03139 305 CSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDF 369 (386)
T ss_pred HHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999853
No 15
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-60 Score=516.28 Aligned_cols=295 Identities=29% Similarity=0.458 Sum_probs=268.9
Q ss_pred HHhhcCC-cEEEec--CCCHhHHHhhcCCCeEEEEcC--CCCCCHHHHHhcCCcceeEEecccccCccchhhHHhcCcee
Q 006212 105 AILRSFG-NVECLY--DLSPEALCEKISQCDALIVRS--GTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLV 179 (656)
Q Consensus 105 ~~l~~~~-~v~~~~--~~~~eel~~~i~~~d~liv~~--~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~~aa~~~GI~V 179 (656)
+.|++.+ ++.... ..+.+++.+.+.++|++|++. ..++++++++++ |+||+|+++|+|+||||+++|+++||.|
T Consensus 62 ~~l~~~g~e~~~~~~~~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~~-p~LK~I~~~g~G~D~id~~aa~~~gI~V 140 (385)
T PRK07574 62 KFLEERGHELVVTSDKDGPDSDFEKELPDADVVISQPFWPAYLTAERIAKA-PNLKLAITAGIGSDHVDLQAASEHGITV 140 (385)
T ss_pred HHHHhcCcEEEEeCCCCCCHHHHHHHcCCCeEEEEecCCCCCCCHHHHhhC-CCCcEEEECCcccccccHHHHHHCCcEE
Confidence 5566663 555432 236788899999999999863 357999999998 5999999999999999999999999999
Q ss_pred ecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHcccccccc--ccccccCCCEEEEEecChhHHHHHHHHhcCCCEEEE
Q 006212 180 VNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSK--YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257 (656)
Q Consensus 180 ~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~--~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~ 257 (656)
+|+|++|+.+||||++++||+++|++..+++.+++|+|.+.. ..+.+|+||||||||+|+||+.+|++|++|||+|++
T Consensus 141 ~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~ 220 (385)
T PRK07574 141 AEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHY 220 (385)
T ss_pred EcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999999998643 247899999999999999999999999999999999
Q ss_pred ECCCC-ChhHHHHcCCee-cCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc
Q 006212 258 HDPYA-PADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 258 ~d~~~-~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~ 335 (656)
||++. +.+.....|+.. .++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||+++|++||+++|++
T Consensus 221 ~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s 300 (385)
T PRK07574 221 TDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALES 300 (385)
T ss_pred ECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHh
Confidence 99986 444445567764 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcc
Q 006212 336 GVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATA 400 (656)
Q Consensus 336 g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~ 400 (656)
|+|+||++|||+.||++.++|||.+||+++|||+|+.|.|++++++..+++|+.+|++|+++.+.
T Consensus 301 G~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~~~~~~ 365 (385)
T PRK07574 301 GHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEGRPIRDE 365 (385)
T ss_pred CCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999877653
No 16
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=3.7e-58 Score=491.39 Aligned_cols=312 Identities=26% Similarity=0.428 Sum_probs=275.5
Q ss_pred CCCeEEEeCCCCHhHHHHhhcCCcEEE--ecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCC-cceeEEecccccC
Q 006212 89 PKPTILVSEKLGEAGLAILRSFGNVEC--LYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANG-KLKVVGRAGVGID 165 (656)
Q Consensus 89 ~~~~ilv~~~l~~~~~~~l~~~~~v~~--~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~-~LK~I~~~g~GvD 165 (656)
+|++++.+++.....++.+.+..++++ ......+|+.+.+.++|++++++.++++++++++++. +||+|+++|+|+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~~~G~d 81 (332)
T PRK08605 2 TKIKIMSVRDEDAPYIKAWAEKHHVEVDLTKEALTDDNVEEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAGFD 81 (332)
T ss_pred cEEEEEecCHHHHHHHHHHHHhcCeEEEEecCCCCHHHHHHhcCCCEEEEecCCCCCHHHHHhhhhcCceEEEEcccccc
Confidence 467888888877788877765554443 2223345667889999999998888999999999852 3999999999999
Q ss_pred ccchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccc-cccccccCCCEEEEEecChhHHHH
Q 006212 166 NVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS-KYVGVSLVGKTLAVMGFGKVGSEV 244 (656)
Q Consensus 166 ~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~-~~~g~~l~gktvGIIGlG~IG~~v 244 (656)
|||+++|+++||.|+|+|++++.+||||++++||+++|++..+++.+++|.|... ...|.+|+|+||||||+|.||+++
T Consensus 82 ~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VgIIG~G~IG~~v 161 (332)
T PRK08605 82 TYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRSIKDLKVAVIGTGRIGLAV 161 (332)
T ss_pred hhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccceeCCCEEEEECCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999987532 235889999999999999999999
Q ss_pred HHHH-hcCCCEEEEECCCCChhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 006212 245 ARRA-KGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGG 322 (656)
Q Consensus 245 A~~l-k~~G~~Vi~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ 322 (656)
|++| ++|||+|++||++..... ..++... ++++++++||+|++|+|++++|+++++++.++.||+|++|||++||.
T Consensus 162 A~~L~~~~g~~V~~~d~~~~~~~--~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~ 239 (332)
T PRK08605 162 AKIFAKGYGSDVVAYDPFPNAKA--ATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGS 239 (332)
T ss_pred HHHHHhcCCCEEEEECCCccHhH--HhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCc
Confidence 9999 789999999999864321 2234444 89999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHhHhcCCeEEEEeeccCCCC--CCCCC-----------ccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHH
Q 006212 323 VIDEEALVRALDSGVVAQAALDVFTEEP--PAKDS-----------KLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVV 389 (656)
Q Consensus 323 ivde~aL~~aL~~g~i~gA~lDV~~~EP--~~~~~-----------~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~ 389 (656)
++|+++|+++|++|+|+||+||||+.|| ++.++ +||.+||+++|||+|++|.|+++++...+++|+.
T Consensus 240 ~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~n~~ 319 (332)
T PRK08605 240 LVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAAVKNLIVDALDATL 319 (332)
T ss_pred ccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 34443 4999999999999999999999999999999999
Q ss_pred HHHcCCCCCcccc
Q 006212 390 GALRGELSATAIN 402 (656)
Q Consensus 390 ~~l~g~~~~~~Vn 402 (656)
+|++|+...+.||
T Consensus 320 ~~~~g~~~~~~~~ 332 (332)
T PRK08605 320 EVLQTGTTRLRVN 332 (332)
T ss_pred HHHcCCCCCCCcC
Confidence 9999999888775
No 17
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=5.1e-58 Score=489.49 Aligned_cols=308 Identities=24% Similarity=0.373 Sum_probs=267.5
Q ss_pred CeEEEeCCCCHh---HHHHhhcCC-cEEEe-cCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcC-CcceeEEeccccc
Q 006212 91 PTILVSEKLGEA---GLAILRSFG-NVECL-YDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN-GKLKVVGRAGVGI 164 (656)
Q Consensus 91 ~~ilv~~~l~~~---~~~~l~~~~-~v~~~-~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~-~~LK~I~~~g~Gv 164 (656)
+||++.+.-+.+ ..+.+++.. ++... ..++.+ +.+.+.++|+++++..++++++++++++ ++||+|++.|+|+
T Consensus 2 ~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~ 80 (330)
T PRK12480 2 TKIMFFGTRDYEKEMALNWGKKNNVEVTTSKELLSSA-TVDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAGF 80 (330)
T ss_pred cEEEEEeCcHHHHHHHHHHHHhcCeEEEEcCCCCCHH-HHHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEeccccc
Confidence 678877655433 233445543 33332 234444 5889999999999866789999999985 3899999999999
Q ss_pred CccchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccc-cccccccCCCEEEEEecChhHHH
Q 006212 165 DNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS-KYVGVSLVGKTLAVMGFGKVGSE 243 (656)
Q Consensus 165 D~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~-~~~g~~l~gktvGIIGlG~IG~~ 243 (656)
||||+++|+++||.|+|+|++++.+||||++++||+++|+++.+++.+++|.|... ...|.+|+|+||||||+|.||++
T Consensus 81 d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~ 160 (330)
T PRK12480 81 DMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAA 160 (330)
T ss_pred chhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999976432 24578999999999999999999
Q ss_pred HHHHHhcCCCEEEEECCCCChhHHHHcCCee-cCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 006212 244 VARRAKGLGMNVIAHDPYAPADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGG 322 (656)
Q Consensus 244 vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ 322 (656)
+|++|++|||+|++||++..... . .... .++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||.
T Consensus 161 vA~~L~~~G~~V~~~d~~~~~~~--~-~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~ 237 (330)
T PRK12480 161 TAKIYAGFGATITAYDAYPNKDL--D-FLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGA 237 (330)
T ss_pred HHHHHHhCCCEEEEEeCChhHhh--h-hhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCcc
Confidence 99999999999999998753211 1 1223 389999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHhHhcCCeEEEEeeccCCCCCC---------CC----CccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHH
Q 006212 323 VIDEEALVRALDSGVVAQAALDVFTEEPPA---------KD----SKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVV 389 (656)
Q Consensus 323 ivde~aL~~aL~~g~i~gA~lDV~~~EP~~---------~~----~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~ 389 (656)
+||++||+++|++|+|+||+||||+.||+. .+ +||+++|||++|||+|+.|.|+++++...+++|+.
T Consensus 238 ~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~n~~ 317 (330)
T PRK12480 238 VINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAAL 317 (330)
T ss_pred ccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999952 12 37999999999999999999999999999999999
Q ss_pred HHHcCCCCCcccc
Q 006212 390 GALRGELSATAIN 402 (656)
Q Consensus 390 ~~l~g~~~~~~Vn 402 (656)
+|++|+...+.||
T Consensus 318 ~~~~~~~~~~~~~ 330 (330)
T PRK12480 318 SVINTGTCETRLN 330 (330)
T ss_pred HHHhCCCCcccCC
Confidence 9999999988776
No 18
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=7.6e-55 Score=469.60 Aligned_cols=273 Identities=28% Similarity=0.433 Sum_probs=244.2
Q ss_pred CeEEEeCCCCHhHHHHhhcCCcEEEecC--CCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccc
Q 006212 91 PTILVSEKLGEAGLAILRSFGNVECLYD--LSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVD 168 (656)
Q Consensus 91 ~~ilv~~~l~~~~~~~l~~~~~v~~~~~--~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD 168 (656)
+||++.+.++ ...+.+++.++|.+... .+.+ .++++|++++++.+++++++++ . ++||+|+++++|+||||
T Consensus 1 mkIl~d~~~~-~~~~~~~~~~ev~~~~~~~~~~~----~l~daD~liv~s~t~v~~~ll~-~-~~Lk~I~~~~~G~D~iD 73 (378)
T PRK15438 1 MKILVDENMP-YARELFSRLGEVKAVPGRPIPVA----QLADADALMVRSVTKVNESLLA-G-KPIKFVGTATAGTDHVD 73 (378)
T ss_pred CEEEEeCCcc-hHHHHHhhcCcEEEeCCCCCCHH----HhCCCcEEEEcCCCCCCHHHhc-C-CCCeEEEECcccccccC
Confidence 4789888775 66677887778776532 3333 3789999999998999999996 4 59999999999999999
Q ss_pred hhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHH
Q 006212 169 LQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRA 248 (656)
Q Consensus 169 ~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l 248 (656)
+++|+++||.|+|+||+|+.+||||++++||+++|+ .|.+|.||||||||+|+||+.+|+++
T Consensus 74 ~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~------------------~g~~L~gktvGIIG~G~IG~~vA~~l 135 (378)
T PRK15438 74 EAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAER------------------DGFSLHDRTVGIVGVGNVGRRLQARL 135 (378)
T ss_pred HHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhcc------------------CCCCcCCCEEEEECcCHHHHHHHHHH
Confidence 999999999999999999999999999999999985 24689999999999999999999999
Q ss_pred hcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCcc----ccccccHHHHhcCCCCcEEEEcCCCchh
Q 006212 249 KGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPT----TSKIFNDETFAKMKKGVRIVNVARGGVI 324 (656)
Q Consensus 249 k~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~----T~~li~~~~l~~mK~gailINvaRg~iv 324 (656)
++|||+|++|||..... .....+.++++++++||+|++|+|+|++ |++|++++.|++||+|++|||+|||++|
T Consensus 136 ~a~G~~V~~~dp~~~~~---~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vV 212 (378)
T PRK15438 136 EALGIKTLLCDPPRADR---GDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVV 212 (378)
T ss_pred HHCCCEEEEECCccccc---ccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhc
Confidence 99999999999864211 1223467999999999999999999996 9999999999999999999999999999
Q ss_pred cHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 006212 325 DEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALR 393 (656)
Q Consensus 325 de~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~ 393 (656)
|++||+++|++|++.||+||||+.||+ .+++|+.+++ |+|||+||+|.|++.++..++++++.+|+.
T Consensus 213 De~AL~~aL~~g~~~ga~LDV~e~EP~-~~~~Ll~~~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~~ 279 (378)
T PRK15438 213 DNTALLTCLNEGQKLSVVLDVWEGEPE-LNVELLKKVD-IGTPHIAGYTLEGKARGTTQVFEAYSKFIG 279 (378)
T ss_pred CHHHHHHHHHhCCCcEEEEecCCCCCC-CchhhhhcCC-EECCccCcCcHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999996 5778988776 999999999999999999999999999994
No 19
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=100.00 E-value=5e-55 Score=459.14 Aligned_cols=281 Identities=33% Similarity=0.514 Sum_probs=256.1
Q ss_pred CHhHHHhhcCCCeEEEEcCC-CCCCHHHHHhcCCcceeEEecccccCccchhhHHhcCceeecCCCCChhhHHHHHHHHH
Q 006212 120 SPEALCEKISQCDALIVRSG-TKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALL 198 (656)
Q Consensus 120 ~~eel~~~i~~~d~liv~~~-~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~ 198 (656)
+.++..+.+.++...+.... ..++.+++.+.+|+||+|+.+|+|+||||+++|++|||.|+|+|+.++++|||++++++
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~li 129 (336)
T KOG0069|consen 50 IKTDFLKRIADSRIAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLL 129 (336)
T ss_pred chhhhhhhccceeeeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHHH
Confidence 44556666676666655433 35788888887789999999999999999999999999999999999999999999999
Q ss_pred HHHHhchhHHHHHHHccccccc--cccccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec
Q 006212 199 ASMARNVSQADASIKAGKWLRS--KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV 275 (656)
Q Consensus 199 L~~~R~i~~~~~~~~~g~W~~~--~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~ 275 (656)
|.+.|++..+++.+++|+|... ...|..+.||||||+|+|+||+.+|+||++||+.+.+++++. ..+.+.+.+.+.+
T Consensus 130 l~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~ 209 (336)
T KOG0069|consen 130 LALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFV 209 (336)
T ss_pred HHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhccccc
Confidence 9999999999999999999321 235788999999999999999999999999998888888876 5677777788888
Q ss_pred CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCC
Q 006212 276 SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDS 355 (656)
Q Consensus 276 ~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~ 355 (656)
++++++++||+|++|||+|++|++++|++.|.+||+|++|||+|||+++|++++++||++|+|+|||+|||++|| +.++
T Consensus 210 d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP-~~~~ 288 (336)
T KOG0069|consen 210 DIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEP-PVDH 288 (336)
T ss_pred CHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCC-CCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 6899
Q ss_pred ccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccc
Q 006212 356 KLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAI 401 (656)
Q Consensus 356 ~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~V 401 (656)
+|++++|+++|||+|+.|.+++++|+..++.|+.+++.|++....+
T Consensus 289 ~l~~~dnvv~~PHigs~t~~t~~~m~~~v~~n~~~~~~g~~~~~~~ 334 (336)
T KOG0069|consen 289 PLLTLDNVVILPHIGSATLETREKMAEIVLNNLLAFFSGKPLLTPV 334 (336)
T ss_pred chhcccceeEecccccCcHHHHHHHHHHHHHHHHHHHccCCCCCcC
Confidence 9999999999999999999999999999999999999999875544
No 20
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=6.6e-54 Score=463.60 Aligned_cols=284 Identities=29% Similarity=0.432 Sum_probs=249.3
Q ss_pred CeEEEeCCCCHhHHHHhhcCCcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccchh
Q 006212 91 PTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQ 170 (656)
Q Consensus 91 ~~ilv~~~l~~~~~~~l~~~~~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~~ 170 (656)
+||++.+.++ ...+.+++.+++.+... .+...+.++++|++++++.+++++++++. ++||+|+++++|+||||++
T Consensus 1 mkI~~d~~~p-~~~~~~~~~~~v~~~~~--~~~~~~~l~daD~liv~~~t~v~~~ll~~--~~Lk~I~~~~~G~D~iD~~ 75 (381)
T PRK00257 1 MKIVADENIP-LLDAFFAGFGEIRRLPG--RAFDRAAVRDADVLLVRSVTRVDRALLEG--SRVRFVGTCTIGTDHLDLD 75 (381)
T ss_pred CEEEEecCch-hHHHHHhhCCcEEEcCC--cccCHHHhCCceEEEEeCCCCCCHHHhcC--CCCeEEEECCccccccCHH
Confidence 5789888875 33566666667765432 11223467999999999988999999974 5899999999999999999
Q ss_pred hHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhc
Q 006212 171 AATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKG 250 (656)
Q Consensus 171 aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~ 250 (656)
+|+++||.|+|+||+|+.+||||++++||+++|+ .|.+|.||||||||+|+||+.+|+++++
T Consensus 76 ~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~------------------~g~~l~gktvGIIG~G~IG~~va~~l~a 137 (381)
T PRK00257 76 YFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER------------------EGVDLAERTYGVVGAGHVGGRLVRVLRG 137 (381)
T ss_pred HHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc------------------cCCCcCcCEEEEECCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999884 2568999999999999999999999999
Q ss_pred CCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCc----cccccccHHHHhcCCCCcEEEEcCCCchhcH
Q 006212 251 LGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNP----TTSKIFNDETFAKMKKGVRIVNVARGGVIDE 326 (656)
Q Consensus 251 ~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~----~T~~li~~~~l~~mK~gailINvaRg~ivde 326 (656)
|||+|++|||.... ...+..+.++++++++||+|++|+|+|+ .|++|++++.|++||+|++|||+|||++||+
T Consensus 138 ~G~~V~~~Dp~~~~---~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde 214 (381)
T PRK00257 138 LGWKVLVCDPPRQE---AEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDN 214 (381)
T ss_pred CCCEEEEECCcccc---cccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCH
Confidence 99999999986421 1123456799999999999999999999 5999999999999999999999999999999
Q ss_pred HHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 006212 327 EALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAIN 402 (656)
Q Consensus 327 ~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~Vn 402 (656)
+||+++|++|++.||+||||+.||+ .+++|+.. |+++|||+|++|.|++.++...+++|+.+|+.+.......+
T Consensus 215 ~AL~~aL~~g~i~~a~LDV~e~EP~-~~~~L~~~-nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~~~~~~~~ 288 (381)
T PRK00257 215 QALREALLSGEDLDAVLDVWEGEPQ-IDLELADL-CTIATPHIAGYSLDGKARGTAQIYQALCRFFGIPARVSLTD 288 (381)
T ss_pred HHHHHHHHhCCCcEEEEeCCCCCCC-CChhhhhC-CEEEcCccccCCHHHHHHHHHHHHHHHHHHHcCCCccchhc
Confidence 9999999999999999999999996 57889875 99999999999999999999999999999999886544443
No 21
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=1.6e-53 Score=451.37 Aligned_cols=267 Identities=22% Similarity=0.283 Sum_probs=235.7
Q ss_pred cCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccchhh-----HHhcCceeecCCC-CChhhHHHHHHHHHHHH
Q 006212 128 ISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQA-----ATEFGCLVVNAPI-ANTVAAAEHGIALLASM 201 (656)
Q Consensus 128 i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~~a-----a~~~GI~V~n~p~-~n~~~vAE~~lal~L~~ 201 (656)
..++|+++++.. +.++++ . ++||||++.|+|+|++|... +..+||.|+|+++ +++.+||||++++||++
T Consensus 36 ~~~a~~~~~~~~---~~~~l~-~-~~Lk~I~~~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~ 110 (312)
T PRK15469 36 NDPADYALVWHP---PVEMLA-G-RDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHW 110 (312)
T ss_pred CccCeEEEEeCC---ChHHhc-c-CCceEEEEcccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHH
Confidence 478999998653 467775 4 59999999999999998322 3458999999975 78999999999999999
Q ss_pred HhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHh
Q 006212 202 ARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQAL 281 (656)
Q Consensus 202 ~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell 281 (656)
+|+++++.+.+++|+|.+ ..+.++.||||||||+|.||+.+|++|++|||+|++||++.........-....++++++
T Consensus 111 ~r~~~~~~~~~~~~~w~~--~~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l 188 (312)
T PRK15469 111 FRRFDDYQALQNSSHWQP--LPEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFL 188 (312)
T ss_pred HcChHHHHHHHHhCCcCC--CCCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHH
Confidence 999999999999999975 245689999999999999999999999999999999998653211000011235799999
Q ss_pred ccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCC
Q 006212 282 ATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHE 361 (656)
Q Consensus 282 ~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~ 361 (656)
++||+|++|+|+|++|+++++++.|++||+|++|||+|||++||++||+++|++|+|+||++|||+.||++.++|||.+|
T Consensus 189 ~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~ 268 (312)
T PRK15469 189 SQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHP 268 (312)
T ss_pred hcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccC
Q 006212 362 NVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINA 403 (656)
Q Consensus 362 nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~Vn~ 403 (656)
|+++|||+|++|.+. ++...+.+|+..|++|+++.+.|+.
T Consensus 269 nvi~TPHiag~t~~~--~~~~~~~~n~~~~~~g~~~~~~V~~ 308 (312)
T PRK15469 269 RVAITPHVAAVTRPA--EAVEYISRTIAQLEKGERVCGQVDR 308 (312)
T ss_pred CeEECCcCCCCcCHH--HHHHHHHHHHHHHHcCCCCcccCCc
Confidence 999999999999885 4778889999999999999888874
No 22
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=5.2e-53 Score=445.39 Aligned_cols=283 Identities=24% Similarity=0.399 Sum_probs=244.9
Q ss_pred eEEEeCCCCHhHHHHhhcC---CcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccc
Q 006212 92 TILVSEKLGEAGLAILRSF---GNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVD 168 (656)
Q Consensus 92 ~ilv~~~l~~~~~~~l~~~---~~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD 168 (656)
++++..++.+...+.+.+. .++... ....++|+++++. + . ..+ ++||||+++|+|+||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~-~-----~-~~~-~~Lk~I~~~~aG~D~id 64 (303)
T PRK06436 2 NVYVNFPMSKKLLEICRDILDLDDVHWY---------PDYYDAEAILIKG-R-----Y-VPG-KKTKMIQSLSAGVDHID 64 (303)
T ss_pred eEEEEccCCHHHHHHHHhhcccceeEec---------cccCCCCEEEecC-C-----c-CCC-CCeEEEEECCcccCccc
Confidence 3666778888877765542 233321 1257889887654 2 1 123 58999999999999999
Q ss_pred hhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHH
Q 006212 169 LQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRA 248 (656)
Q Consensus 169 ~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l 248 (656)
+++|+++||.+.|. |+++.+||||++++||+++|+++++++.+++|+|.+. .+.+|+||||||||+|+||+.+|+++
T Consensus 65 ~~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~--~~~~L~gktvgIiG~G~IG~~vA~~l 141 (303)
T PRK06436 65 VSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQS--PTKLLYNKSLGILGYGGIGRRVALLA 141 (303)
T ss_pred HHHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCC--CCCCCCCCEEEEECcCHHHHHHHHHH
Confidence 99999998887774 8999999999999999999999999999999999863 46899999999999999999999999
Q ss_pred hcCCCEEEEECCCCChhHHHHcCC--eecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcH
Q 006212 249 KGLGMNVIAHDPYAPADKARAVGV--ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDE 326 (656)
Q Consensus 249 k~~G~~Vi~~d~~~~~~~a~~~g~--~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde 326 (656)
++|||+|++||++... .++ ...++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||+++|+
T Consensus 142 ~afG~~V~~~~r~~~~-----~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~ 216 (303)
T PRK06436 142 KAFGMNIYAYTRSYVN-----DGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDK 216 (303)
T ss_pred HHCCCEEEEECCCCcc-----cCcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCH
Confidence 9999999999987432 122 245899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCC-CCcHHHHHHHHHHHHHHHHHHHcCCCCCccccC
Q 006212 327 EALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLG-ASTKEAQEGVAIEIAEAVVGALRGELSATAINA 403 (656)
Q Consensus 327 ~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g-~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~Vn~ 403 (656)
++|+++|++|++.||++|||+.||++.++ .+||+++|||++ +.|.|+++++...+++|+.+|+.|++ .+.|+.
T Consensus 217 ~aL~~aL~~g~i~~a~lDV~~~EP~~~~~---~~~nviiTPHi~g~~t~e~~~~~~~~~~~ni~~~~~g~~-~~~V~~ 290 (303)
T PRK06436 217 NDMLNFLRNHNDKYYLSDVWWNEPIITET---NPDNVILSPHVAGGMSGEIMQPAVALAFENIKNFFEGKP-KNIVRK 290 (303)
T ss_pred HHHHHHHHcCCceEEEEccCCCCCCCccC---CCCCEEECCccccccCHHHHHHHHHHHHHHHHHHHcCCC-CceEch
Confidence 99999999999999999999999987665 589999999975 58999999999999999999999876 577763
No 23
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=100.00 E-value=1.9e-44 Score=353.33 Aligned_cols=176 Identities=46% Similarity=0.759 Sum_probs=159.3
Q ss_pred HHHHHHHHhchhHHHHHHHcccc-ccccccccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhH-HHHcCC
Q 006212 195 IALLASMARNVSQADASIKAGKW-LRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK-ARAVGV 272 (656)
Q Consensus 195 lal~L~~~R~i~~~~~~~~~g~W-~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~-a~~~g~ 272 (656)
+++||+++|+++++++.+++|.| ......+.+++|+||||||+|.||+.+|+++++|||+|++|||+..... +...++
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~ 80 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEWASRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV 80 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBHHHHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE
T ss_pred ChHHHHHHhCHHHHHHHHHcCCCCCCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc
Confidence 58999999999999999999999 3344678999999999999999999999999999999999999985444 667788
Q ss_pred eecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCC
Q 006212 273 ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA 352 (656)
Q Consensus 273 ~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~ 352 (656)
...++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|++.||++|||+.||++
T Consensus 81 ~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~ 160 (178)
T PF02826_consen 81 EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPLP 160 (178)
T ss_dssp EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSSS
T ss_pred eeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCcEEEcCCCC
Q 006212 353 KDSKLVQHENVTVTPHLG 370 (656)
Q Consensus 353 ~~~~L~~~~nvilTPH~g 370 (656)
.++||+++||+++|||+|
T Consensus 161 ~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 161 ADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp TTHHHHTSTTEEEESS-T
T ss_pred CCChHHcCCCEEEeCccC
Confidence 899999999999999985
No 24
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=100.00 E-value=5.2e-38 Score=315.02 Aligned_cols=186 Identities=17% Similarity=0.217 Sum_probs=172.1
Q ss_pred hHHHHHHHhHHHHHhhcCCCCceEEEEEEeecCCCCCcccccccHHHHHHhhhhhhhccccccchHhHhhccCceEEEEE
Q 006212 417 YVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEER 496 (656)
Q Consensus 417 ~~~laerlG~l~~qL~~g~~~~k~i~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~iAke~GI~v~~~~ 496 (656)
+..+++|||++++||+++ .+++|+++|+|+++ .++++|+++.|+++|+|++..++ +|++||+.+||||||++.|.+
T Consensus 21 ht~laerlG~l~~ql~~~--~~~~I~i~~~Gsla-~t~~~~~~~~A~l~GlL~~~~~~-vn~vNA~~iAkerGI~v~~~~ 96 (208)
T TIGR00719 21 HTAGAAKIANVARSIFGN--EPEQIEFQFHGSFA-ETFKGHGTDRAIIGGILDFDPDD-DRIKTAFEIAEAAGIDIEFRT 96 (208)
T ss_pred HHHHHHHHHHHHHHHhcC--CCcEEEEEEEeeec-ccCCCchHHHHHHhhhcCCCCCc-hHHHHHHhhhhhcCceEEEEE
Confidence 678999999999999998 89999999999998 77999999999999999888875 999999999999999999987
Q ss_pred eecCCCCC-CCCceEEEEEEecccccceecCCCcEEEEEEEEEC-CeeEEEEEcceeEEeecCccEEEEEecCCCCchhh
Q 006212 497 VVADSSPE-FPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKF-GIPHLTRVGSFGVDASLEGNLILCRQVDQPGMIGK 574 (656)
Q Consensus 497 ~~~~~~~~-~~~ntv~i~l~~~~~~~~~~~~~~~~~~v~Gt~~g-G~~rI~~IdGf~V~~~g~~~~Llv~~~D~PGvIa~ 574 (656)
.+. +. .|+|++++++++ .++..+++.|+++| |.+||++||||+||+.|++|+|++.|.|+||+|++
T Consensus 97 ~~~---~~~~~~n~v~i~v~~---------~~g~~~~v~Gts~ggg~~riv~idg~~vd~~~~g~~L~~~~~D~PG~Ig~ 164 (208)
T TIGR00719 97 EDA---GDNVHPNSAKITFSD---------EKGEEEELIGISIGGGAIEITEINGFAIEFRGEHPAILLEHNDKFGTIAG 164 (208)
T ss_pred CCC---CCCCCCCeEEEEEEc---------CCCCEEEEEEEEeCCCeEEEEEECCEEEEecCCccEEEEEeCCCCChHHH
Confidence 642 23 699999999973 33344899999997 79999999999999999999999999999999999
Q ss_pred HHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHH
Q 006212 575 VGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEI 618 (656)
Q Consensus 575 V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L 618 (656)
|+++|++++|||++|+++|..++++|+|+|++|++++++++++|
T Consensus 165 vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~~v~~~vl~~i 208 (208)
T TIGR00719 165 VANLLAGFEINIEHLETAKKDIGNIALLTIEIDKNIDDHIKDAI 208 (208)
T ss_pred HHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCCCCCHHHHhhC
Confidence 99999999999999999999999999999999999999999975
No 25
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=99.97 E-value=3.5e-30 Score=268.15 Aligned_cols=293 Identities=29% Similarity=0.445 Sum_probs=249.1
Q ss_pred HhhcCCcEEEecCCCHhHHHhh-cCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccchhhHHhcCceeecCCC
Q 006212 106 ILRSFGNVECLYDLSPEALCEK-ISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPI 184 (656)
Q Consensus 106 ~l~~~~~v~~~~~~~~eel~~~-i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~~aa~~~GI~V~n~p~ 184 (656)
+++....+-++...+..|+.++ +.++-+-+......++++-+|+.+ -||++.+.|.|+||+|+.+|.+.||.|+|.|+
T Consensus 48 ilk~~atvafcdaqstqeIhekvLneavgam~yh~i~l~reDlEkfk-alRv~~rig~g~dn~dikaAseL~iavC~ip~ 126 (435)
T KOG0067|consen 48 ILKDLATVAFCDAQSTQEIHEKVLNEAVGAMMYHTITLPREDLEKFK-ALRVIVRIGSGYDNIDIKAASELGIAVCNIPS 126 (435)
T ss_pred hhhcchheeeecccchHHHHHHHHHHhhhcceeeecccchhhHHHhh-hhceeeeeccccchhhhhhhhhheeeeecccc
Confidence 3555556666666666666553 333333333333568999999986 69999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccc-------cccccCCCEEEEEecChhHHHHHHHHhcCCCEEEE
Q 006212 185 ANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKY-------VGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257 (656)
Q Consensus 185 ~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~-------~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~ 257 (656)
..-+.+|+-++.++|.+.|+-....+.+++|.|....- .....+|.++|++|+|+.|+.++.++++||+.|+.
T Consensus 127 ~~Ve~~a~stl~hIl~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~if 206 (435)
T KOG0067|consen 127 DAVEETADSTLCHILNLYRRNTWLCQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIF 206 (435)
T ss_pred hhHHHHHHHHHHHHHhhhcccchhhhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeee
Confidence 99999999999999999999999999999999975321 23468899999999999999999999999999999
Q ss_pred ECCCCChhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcC
Q 006212 258 HDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (656)
Q Consensus 258 ~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g 336 (656)
|||+...-..+.+|.+.+ ++++++.++|.+++||-+.+.+.++++.-.+..|++|++++|++||+++|+.+|.++|+.|
T Consensus 207 ydp~~~~g~~~~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G 286 (435)
T KOG0067|consen 207 YDPYLIDGIDKSLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSG 286 (435)
T ss_pred ecchhhhhhhhhcccceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhhccC
Confidence 999986666677788765 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeeccCCCCC-CCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC---CccccCCCC
Q 006212 337 VVAQAALDVFTEEPP-AKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELS---ATAINAPMV 406 (656)
Q Consensus 337 ~i~gA~lDV~~~EP~-~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~---~~~Vn~p~~ 406 (656)
++.|++ |- -...||.+.||.++|||.+++++.+..++...++..+...+.|..+ +++||..+.
T Consensus 287 ~i~~aa-------~~~~~~~~l~d~pn~ic~~~ta~~~e~~~~e~re~aa~eiR~ai~g~ip~~l~~cvnkE~~ 353 (435)
T KOG0067|consen 287 RIRGAA-------PRSFKQGPLKDAPNLICTPHTAWYSEAASVELREVAALEIRRAITGRIPDSLRNCVNKEFS 353 (435)
T ss_pred ceeccc-------CcccccccccCCCCCCCCcccchhhHHHHHHHHHHHhhhhhhccCCCCchhHHHHHhhhhc
Confidence 999987 11 1346888999999999999999999999888888888888887654 567775433
No 26
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.92 E-value=6.6e-26 Score=245.47 Aligned_cols=325 Identities=21% Similarity=0.232 Sum_probs=222.6
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-hHHHHcCCe-----ecCHHHHhccCCEEEEccCCCccccccccH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVE-----LVSFDQALATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~a~~~g~~-----~~~l~ell~~aDvV~l~~Plt~~T~~li~~ 303 (656)
++|+|||+|+||+++|+.++..|++|.+|++.... ......+.. ..++++++++||+|++|+|. ..+..++.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~-~~~~~vl~- 78 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPV-DATAALLA- 78 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCH-HHHHHHHH-
Confidence 57999999999999999999999888777765432 222233322 23678889999999999995 34555553
Q ss_pred HHHh-cCCCCcEEEEcCCCchhcHHHHHHhHhcC--CeEE---EEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHH
Q 006212 304 ETFA-KMKKGVRIVNVARGGVIDEEALVRALDSG--VVAQ---AALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQ 377 (656)
Q Consensus 304 ~~l~-~mK~gailINvaRg~ivde~aL~~aL~~g--~i~g---A~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~ 377 (656)
+... .++++++|+|+++-+.-..+++.+.+..+ .+.+ ++.+..+.+ .++..||++.++++||+-+.. .+..
T Consensus 79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~--aa~~~lf~g~~~il~~~~~~~-~~~~ 155 (359)
T PRK06545 79 ELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVA--AARADLFENAPWVLTPDDHTD-PDAV 155 (359)
T ss_pred HHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHH--HhcHHHHCCCcEEEecCCCCC-HHHH
Confidence 2233 47899999999987654444443332221 2221 111122211 234579999999999976443 2222
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcc-cc----------CCCCChhhhhhccchHHHHHHHh---HHHHHhhcCCCCceEEEE
Q 006212 378 EGVAIEIAEAVVGALRGELSATA-IN----------APMVPSEVLSELAPYVVLAKKLG---RLAVQLVSGGSGIKSVKL 443 (656)
Q Consensus 378 ~~~~~~~~~~i~~~l~g~~~~~~-Vn----------~p~~~~~~~~~l~p~~~laerlG---~l~~qL~~g~~~~k~i~i 443 (656)
+.+.++++.-..... +. .-|+|+-+... ++..++ ..+.+|+++ +|+++++
T Consensus 156 --------~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~a------l~~~~~~~~~~~~~la~~--gfrd~tR 219 (359)
T PRK06545 156 --------AELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILASS------LAARLAGEHPLALRLAAG--GFRDITR 219 (359)
T ss_pred --------HHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHHH------HHHhhccCchHHHhhhcc--cccCCcc
Confidence 233333333322221 11 11444433322 233332 345678888 9999999
Q ss_pred EEeecCCCCCcccccccHHHHHHhhhhhhhccccccchHhHhhccCceEEEEEeecCCCCCCCCceEEEEEEecccccce
Q 006212 444 IYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAA 523 (656)
Q Consensus 444 ~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~iAke~GI~v~~~~~~~~~~~~~~~ntv~i~l~~~~~~~~~ 523 (656)
++.+++. +|.++...|+..+...|+.+..+.-.+.++..-.+...|.-.|.+.. .+++.+..+-.+
T Consensus 220 ia~~~p~-~w~di~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~------~~r~~~~~~~~~------- 285 (359)
T PRK06545 220 IASSDPG-MWRDILESNAEALLDALDEWIEDLDRARDALESGDAEAIAELFDAGK------AGRDRLPGKHGG------- 285 (359)
T ss_pred ccCCCHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHhCccccCC-------
Confidence 9999998 99999999999999999999988778888777666666665554433 344443332211
Q ss_pred ecCCCcEEEEEEEEECCeeEEEEEcceeEEeecCccEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEE
Q 006212 524 AVSENGEISIEGKVKFGIPHLTRVGSFGVDASLEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMA 603 (656)
Q Consensus 524 ~~~~~~~~~v~Gt~~gG~~rI~~IdGf~V~~~g~~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~ 603 (656)
..++++.|+|..+|+||.|+.|+++|++++|||.++++.+.+++..+++.
T Consensus 286 ------------------------------~~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~ 335 (359)
T PRK06545 286 ------------------------------AIPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQ 335 (359)
T ss_pred ------------------------------CCCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEE
Confidence 55789999999999999999999999999999999999999988999999
Q ss_pred EEeCCCCCHHHHHHHh
Q 006212 604 IGVDEEPNQDSLKEIG 619 (656)
Q Consensus 604 i~~D~~~~~e~l~~L~ 619 (656)
|.++.+.+.+...++.
T Consensus 336 ~~~~~~~~~~~~~~~~ 351 (359)
T PRK06545 336 ISFKNEEDRERAKALL 351 (359)
T ss_pred EEeCCHHHHHHHHHHH
Confidence 9999887765555544
No 27
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.86 E-value=7.4e-22 Score=213.36 Aligned_cols=310 Identities=16% Similarity=0.165 Sum_probs=208.0
Q ss_pred CCCEEEEEec-ChhHHHHHHHHhc-CCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHH-
Q 006212 228 VGKTLAVMGF-GKVGSEVARRAKG-LGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDE- 304 (656)
Q Consensus 228 ~gktvGIIGl-G~IG~~vA~~lk~-~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~- 304 (656)
.-.||+|||+ |.||+++|+.++. +|.+|++||+... ...++++.+++||+|++|+|.. .+..++.+-
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~---------~~~~~~~~v~~aDlVilavPv~-~~~~~l~~l~ 72 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP---------GSLDPATLLQRADVLIFSAPIR-HTAALIEEYV 72 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc---------ccCCHHHHhcCCCEEEEeCCHH-HHHHHHHHHh
Confidence 4579999999 9999999999995 5999999998410 1235788899999999999944 345555321
Q ss_pred HH-hcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCC--CCccccCCcEEEcCCCCCCcHHHHHHHH
Q 006212 305 TF-AKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAK--DSKLVQHENVTVTPHLGASTKEAQEGVA 381 (656)
Q Consensus 305 ~l-~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~--~~~L~~~~nvilTPH~g~~T~ea~~~~~ 381 (656)
.+ ..+|++++|+|+++-+---.+++. +.+ .++-+..|+.. .+.+|++.+||+||.- ..+.
T Consensus 73 ~~~~~l~~~~iVtDVgSvK~~i~~~~~---~~~------~~fVG~HPMaG~E~s~lf~g~~~iltp~~---~~~~----- 135 (370)
T PRK08818 73 ALAGGRAAGQLWLDVTSIKQAPVAAML---ASQ------AEVVGLHPMTAPPKSPTLKGRVMVVCEAR---LQHW----- 135 (370)
T ss_pred hhhcCCCCCeEEEECCCCcHHHHHHHH---hcC------CCEEeeCCCCCCCCCcccCCCeEEEeCCC---chhH-----
Confidence 11 237999999999986632222322 111 13455677642 3578999999999962 1121
Q ss_pred HHHHHHHHHHHcCCCCCccccCCCCChhhhhhccchH---------HHHHHH-------hHHHH--HhhcCCCCce----
Q 006212 382 IEIAEAVVGALRGELSATAINAPMVPSEVLSELAPYV---------VLAKKL-------GRLAV--QLVSGGSGIK---- 439 (656)
Q Consensus 382 ~~~~~~i~~~l~g~~~~~~Vn~p~~~~~~~~~l~p~~---------~laerl-------G~l~~--qL~~g~~~~k---- 439 (656)
.+.+.++++....... .++++.++.+.-++ .++..+ ..+.. .+.++ +|+
T Consensus 136 ---~~~v~~l~~~~Ga~v~----~~~aeeHD~~~A~vS~LsHl~~l~~~~~~~~~~~~~~~~~~~~~f~~~--gFr~d~t 206 (370)
T PRK08818 136 ---SPWVQSLCSALQAECV----YATPEHHDRVMALVQAMVHATHLAQAGVLRDYAPLLGELRALMPYRSA--SFELDTA 206 (370)
T ss_pred ---HHHHHHHHHHcCCEEE----EcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhccccch--hhHHHhh
Confidence 1223333433332221 34455555444322 111111 11111 34555 788
Q ss_pred EEEEEEeecCCCCCcccccccHHHHHHhhhhhhhccccccchHhHhhccCceEE---EEEeecCCCCCCC-CceEE----
Q 006212 440 SVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRIS---EERVVADSSPEFP-IDSIQ---- 511 (656)
Q Consensus 440 ~i~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~iAke~GI~v~---~~~~~~~~~~~~~-~ntv~---- 511 (656)
++++++++++. ||.+++..|+ .+...|+.+.+....+.++..--++.+|.-. |..++.- .+ ++.++
T Consensus 207 ~iTRIAss~P~-mW~dI~~~N~-~i~~~l~~~~~~L~~l~~~i~~~D~~~~~~~~~~f~~a~~~----~~~r~~~~~~~~ 280 (370)
T PRK08818 207 VIARILSLNPS-IYEDIQFGNP-YVGEMLDRLLAQLQELRALVAQGDDAARARFRAQFLHANAQ----ALQEDALAAGNY 280 (370)
T ss_pred hcchhhcCCHH-HHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh----hcchhhCCcccc
Confidence 77899999998 9999999999 6777888888887777777776666666655 4444310 14 45544
Q ss_pred -EEEEecccccceecCCCcEEEEEEEEECCeeEEEEEcceeEEeec----CccEEEEEec-CCCCchhhHHhhhhcCCcc
Q 006212 512 -VQLSNVDSKFAAAVSENGEISIEGKVKFGIPHLTRVGSFGVDASL----EGNLILCRQV-DQPGMIGKVGNILGEHNVN 585 (656)
Q Consensus 512 -i~l~~~~~~~~~~~~~~~~~~v~Gt~~gG~~rI~~IdGf~V~~~g----~~~~Llv~~~-D~PGvIa~V~~iL~~~~IN 585 (656)
.+-++ +.+ +.+.|+|..+ |+||.|++|.++|++++||
T Consensus 281 ~~~~~g-------------------------------------~~~~~~~~~~~l~~~v~~d~pG~L~~vl~~la~~~IN 323 (370)
T PRK08818 281 TYERVG-------------------------------------YLLADLTEPLTLSVYLPEDRPGSLRTLLHVFEQHGVN 323 (370)
T ss_pred cccccc-------------------------------------cccCCCCcceEEEEECCCCCCChHHHHHHHHHHcCcc
Confidence 22211 444 6889999885 9999999999999999999
Q ss_pred ccceEeeeeccCccEEEEEEeCCCCCHHHHHH
Q 006212 586 VNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKE 617 (656)
Q Consensus 586 I~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~ 617 (656)
|.++++.+.+++..+ ..+++..+.+...+..
T Consensus 324 it~Ies~~~r~~~y~-f~i~~~~~~~~~~~~~ 354 (370)
T PRK08818 324 LSSIHSSRTPAGELH-FRIGFEPGSDRAALAR 354 (370)
T ss_pred cceEEEecccCceEE-EEEEEeccccHHHHHH
Confidence 999999888888777 7888888766655543
No 28
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=99.86 E-value=4.7e-21 Score=178.89 Aligned_cols=101 Identities=43% Similarity=0.549 Sum_probs=91.4
Q ss_pred EEEeCCCCHhHHHHhhcCCcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccchhhH
Q 006212 93 ILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAA 172 (656)
Q Consensus 93 ilv~~~l~~~~~~~l~~~~~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~~aa 172 (656)
||++++++++.++.|++..++.+....+.+++.+.++++|++++++.+++++++++++ |+||+|++.|+|+||||+++|
T Consensus 1 ili~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~a 79 (133)
T PF00389_consen 1 ILITDPLPDEEIERLEEGFEVEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVLEAA-PNLKLISTAGAGVDNIDLEAA 79 (133)
T ss_dssp EEESSS-SHHHHHHHHHTSEEEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHH-TT-SEEEESSSSCTTB-HHHH
T ss_pred eEEeccCCHHHHHHHHCCceEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhcc-ceeEEEEEcccccCcccHHHH
Confidence 7999999999999999933888888889999999999999999998777999999998 699999999999999999999
Q ss_pred HhcCceeecCCCCChhhHHHHH
Q 006212 173 TEFGCLVVNAPIANTVAAAEHG 194 (656)
Q Consensus 173 ~~~GI~V~n~p~~n~~~vAE~~ 194 (656)
+++||.|+|+||+++.+||||+
T Consensus 80 ~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 80 KERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp HHTTSEEEE-TTTTHHHHHHHH
T ss_pred hhCeEEEEEeCCcCCcchhccc
Confidence 9999999999999999999999
No 29
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.84 E-value=3.5e-20 Score=204.14 Aligned_cols=175 Identities=22% Similarity=0.311 Sum_probs=143.7
Q ss_pred cceeEE-ecccccCccc-hhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCC
Q 006212 153 KLKVVG-RAGVGIDNVD-LQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGK 230 (656)
Q Consensus 153 ~LK~I~-~~g~GvD~iD-~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gk 230 (656)
+++=++ -.++|+..+- ++..-+.||+|+|+|++++.+++|+++++++++. +..+|.+ +..+.||
T Consensus 190 ~i~G~~EeTttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~------d~~~R~~--------~~~LaGK 255 (476)
T PTZ00075 190 KIVGVSEETTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLI------DGIFRAT--------DVMIAGK 255 (476)
T ss_pred ccEeeeecchHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHH------HHHHHhc--------CCCcCCC
Confidence 344433 4678887752 3344457899999999999999999999999888 3344443 4689999
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcC
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKM 309 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~m 309 (656)
+++|+|+|.||+.+|+++++|||+|+++++... ...+...|+..+++++++++||+|++|+ .+.++|+.+.|+.|
T Consensus 256 tVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~at----Gt~~iI~~e~~~~M 331 (476)
T PTZ00075 256 TVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTAT----GNKDIITLEHMRRM 331 (476)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECC----CcccccCHHHHhcc
Confidence 999999999999999999999999999976542 2245557888889999999999999985 37889999999999
Q ss_pred CCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCC
Q 006212 310 KKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA 352 (656)
Q Consensus 310 K~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~ 352 (656)
|+|++|+|+||+ |++.+.++|+.+. ++|+++.+|..
T Consensus 332 KpGAiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v 367 (476)
T PTZ00075 332 KNNAIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQV 367 (476)
T ss_pred CCCcEEEEcCCC---chHHhHHHHHhcC----CceeecccCCC
Confidence 999999999999 6777778887643 68999999864
No 30
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.78 E-value=9.3e-19 Score=184.14 Aligned_cols=150 Identities=22% Similarity=0.379 Sum_probs=127.4
Q ss_pred CCCHHHHHhcCCcceeEEecccccCccchh-hHHhcCceee------cCCCCChhhHHHHHHHHHHHHHhchhHHHHHHH
Q 006212 141 KVTRSVFEAANGKLKVVGRAGVGIDNVDLQ-AATEFGCLVV------NAPIANTVAAAEHGIALLASMARNVSQADASIK 213 (656)
Q Consensus 141 ~v~~e~l~~~~~~LK~I~~~g~GvD~iD~~-aa~~~GI~V~------n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~ 213 (656)
+++++++++++ .++...+|+++.|++ +|+++||.|+ |++.+|+.++||+++++++..
T Consensus 81 ~l~~~~l~~~~----~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~------------ 144 (287)
T TIGR02853 81 VLTPELLESTK----GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEH------------ 144 (287)
T ss_pred cccHHHHHhcC----CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHh------------
Confidence 36788888763 477788999999998 9999999999 999999999999999877732
Q ss_pred ccccccccccccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec---CHHHHhccCCEEEE
Q 006212 214 AGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV---SFDQALATADFISL 289 (656)
Q Consensus 214 ~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~---~l~ell~~aDvV~l 289 (656)
.+.+++|++++|+|+|.||+.+|++|+++|++|.++|++. ....+...|...+ +++++++++|+|++
T Consensus 145 ---------~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVin 215 (287)
T TIGR02853 145 ---------TDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVIN 215 (287)
T ss_pred ---------cCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEE
Confidence 2458899999999999999999999999999999999875 2333445566543 56788999999999
Q ss_pred ccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 006212 290 HMPLNPTTSKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 290 ~~Plt~~T~~li~~~~l~~mK~gailINvaR 320 (656)
|+|.. +++++.++.||+++++||++.
T Consensus 216 t~P~~-----ii~~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 216 TIPAL-----VLTADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred CCChH-----HhCHHHHhcCCCCeEEEEeCc
Confidence 99954 678889999999999999996
No 31
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.63 E-value=4.2e-16 Score=163.36 Aligned_cols=243 Identities=15% Similarity=0.123 Sum_probs=149.9
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCe--ecCHHHHhccCCEEEEccCCCccccccccHHHHh
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVE--LVSFDQALATADFISLHMPLNPTTSKIFNDETFA 307 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~--~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~ 307 (656)
+|||||+|.||+++|+.|+..|++|.+||++. ..+.+.+.|.. ..+..+.+++||+|++|+|... ...++ ++...
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~-~~~~~-~~l~~ 79 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGL-LLPPS-EQLIP 79 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHH-HHHHH-HHHHH
Confidence 79999999999999999999999999999875 34555566642 2222356899999999999432 33333 44556
Q ss_pred cCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEee-ccCCCCC---CCCCccccCCcEEEcCCCCCCcHHHHHHHHHH
Q 006212 308 KMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALD-VFTEEPP---AKDSKLVQHENVTVTPHLGASTKEAQEGVAIE 383 (656)
Q Consensus 308 ~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lD-V~~~EP~---~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~ 383 (656)
.++++++++|++.-+.-..+++.+.. ...+. .+ .++.|.. .+...||..+++++||+-+.. .++.+
T Consensus 80 ~l~~~~ii~d~~Svk~~~~~~~~~~~-~~~v~---~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~-~~~~~----- 149 (279)
T PRK07417 80 ALPPEAIVTDVGSVKAPIVEAWEKLH-PRFVG---SHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTD-LNALA----- 149 (279)
T ss_pred hCCCCcEEEeCcchHHHHHHHHHHhh-CCcee---eCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCC-HHHHH-----
Confidence 68999999999976543333332211 12221 11 1222210 122348899999999986543 33222
Q ss_pred HHHHHHHHHcCCCCCcc-ccC----------CCCChhhhhhccchHHH--HHHHhHHHHHhhcCCCCceEEEEEEeecCC
Q 006212 384 IAEAVVGALRGELSATA-INA----------PMVPSEVLSELAPYVVL--AKKLGRLAVQLVSGGSGIKSVKLIYRSARD 450 (656)
Q Consensus 384 ~~~~i~~~l~g~~~~~~-Vn~----------p~~~~~~~~~l~p~~~l--aerlG~l~~qL~~g~~~~k~i~i~~~Gs~a 450 (656)
.++.+.+.+ ..... +.. -|+|+-....+...+.. ...+-.++..++++ +||++|+++.+++.
T Consensus 150 ~v~~l~~~l---G~~~v~~~~~~hD~~~a~~shlp~~~a~~l~~~~~~~~~~~~~~~~~~~~~~--gfrd~tRia~~~p~ 224 (279)
T PRK07417 150 IVEELAVSL---GSKIYTADPEEHDRAVALISHLPVMVSAALIQTCGTEKDPSVLKLAQNLASS--GFADTSRVGGGNPE 224 (279)
T ss_pred HHHHHHHHc---CCEEEEcCHHHHHHHHHHHcchHHHHHHHHHHHHhhcccchhhHHhhhhccC--cccccccccCCChH
Confidence 223333333 22211 110 13333222122111100 01111222457777 99999999999998
Q ss_pred CCCcccccccHHHHHHhhhhhhhccccccchHhHhhccCce
Q 006212 451 PDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLR 491 (656)
Q Consensus 451 ~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~iAke~GI~ 491 (656)
+|.++...|+..+...|+.+..+.-.+.++..--++.++.
T Consensus 225 -~w~~i~~~N~~~i~~~l~~~~~~l~~~~~~l~~~d~~~l~ 264 (279)
T PRK07417 225 -LGVMMAEYNRAALLRSLASYRQSLDQLEELIEQENWSALE 264 (279)
T ss_pred -HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999888788988888767777777655555554
No 32
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.57 E-value=5.4e-14 Score=148.82 Aligned_cols=166 Identities=22% Similarity=0.337 Sum_probs=132.5
Q ss_pred hhcCCCeEEEEcCC----------------CCCCHHHHHhcCCcceeEEecccccCccchhhHHhcCceeecCCCC----
Q 006212 126 EKISQCDALIVRSG----------------TKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIA---- 185 (656)
Q Consensus 126 ~~i~~~d~liv~~~----------------~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~~aa~~~GI~V~n~p~~---- 185 (656)
+.+.++|+++.-.. ..++++.++.++ ++..+. .|.+.+++| +.|.++||.+++.+..
T Consensus 51 ~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~-~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~ 127 (296)
T PRK08306 51 EALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTP-EHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVA 127 (296)
T ss_pred HHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcC-CCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhh
Confidence 45788999885310 124688999885 666443 599999988 8999999999998864
Q ss_pred --ChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-
Q 006212 186 --NTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA- 262 (656)
Q Consensus 186 --n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~- 262 (656)
|+.++||.++.+++. ..+.++.|++++|+|+|.+|+.+++.|+++|++|.++|++.
T Consensus 128 ~~ns~~~aegav~~a~~---------------------~~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~ 186 (296)
T PRK08306 128 ILNSIPTAEGAIMMAIE---------------------HTPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA 186 (296)
T ss_pred hhccHhHHHHHHHHHHH---------------------hCCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 889999997765431 12356789999999999999999999999999999999985
Q ss_pred ChhHHHHcCCeec---CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 006212 263 PADKARAVGVELV---SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 263 ~~~~a~~~g~~~~---~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaR 320 (656)
....+.+.|+..+ ++.+.++++|+|+.++|. .+++++.++.|++++++||++.
T Consensus 187 ~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 187 HLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-----LVLTKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred HHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-----hhhhHHHHHcCCCCcEEEEEcc
Confidence 3445667787655 466788999999999983 4678889999999999999984
No 33
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.57 E-value=5.5e-15 Score=154.65 Aligned_cols=226 Identities=24% Similarity=0.276 Sum_probs=149.0
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEE--EEECCCC-ChhHHHHcCCee---cCH-HHHhccCCEEEEccCCCccccccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNV--IAHDPYA-PADKARAVGVEL---VSF-DQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~V--i~~d~~~-~~~~a~~~g~~~---~~l-~ell~~aDvV~l~~Plt~~T~~li 301 (656)
-++|+|+|+|.||+++|+.++..|+.| +++|++. ....+..+|+.. .+. .+.+..||+|++++|. ..|..++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi-~~~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPI-EATEEVL 81 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccH-HHHHHHH
Confidence 468999999999999999999888866 5566654 345556677632 233 6778889999999994 3455555
Q ss_pred cHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCC---CCCccccCCcEEEcCCCCCCcHHHHH
Q 006212 302 NDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA---KDSKLVQHENVTVTPHLGASTKEAQE 378 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~---~~~~L~~~~nvilTPH~g~~T~ea~~ 378 (656)
. +....+|+|++|+|+++-+--..+++.+.+.+.. ++.+..|+. ++.+||++..||+||.-...
T Consensus 82 ~-~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~------~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~------ 148 (279)
T COG0287 82 K-ELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV------RFVGGHPMFGPEADAGLFENAVVVLTPSEGTE------ 148 (279)
T ss_pred H-HhcccCCCCCEEEecccccHHHHHHHHHhccCCC------eeEecCCCCCCcccccccCCCEEEEcCCCCCC------
Confidence 3 3333699999999999866544555544443321 223445653 35689999999999974333
Q ss_pred HHHHHHHHHHHHHHcCCCCCccccCC-----------CCChhhhhhccchHHHHHHHhHHHHHhhcCCCCceEEEEEEee
Q 006212 379 GVAIEIAEAVVGALRGELSATAINAP-----------MVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRS 447 (656)
Q Consensus 379 ~~~~~~~~~i~~~l~g~~~~~~Vn~p-----------~~~~~~~~~l~p~~~laerlG~l~~qL~~g~~~~k~i~i~~~G 447 (656)
.+.+..+.+++.+...+-..-.| |+|+...-.+.....-.+....++..|+++ +|+++++++.+
T Consensus 149 ---~~~~~~~~~~~~~~ga~~v~~~~eeHD~~~a~vshLpH~~a~al~~~~~~~~~~~~~~~~~as~--~frd~tRia~~ 223 (279)
T COG0287 149 ---KEWVEEVKRLWEALGARLVEMDAEEHDRVMAAVSHLPHAAALALANALAKLETEELLVLKLASG--GFRDITRIASS 223 (279)
T ss_pred ---HHHHHHHHHHHHHcCCEEEEcChHHHhHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHhcccc--chhhHHHHHcC
Confidence 33456677777765543332211 333332222221111111112335678888 99999999999
Q ss_pred cCCCCCcccccccHHHHHHhhhhhhhc
Q 006212 448 ARDPDDLDTRILRAMITKGIIEPISAS 474 (656)
Q Consensus 448 s~a~~~~~~~~~~~a~l~GlL~~~~~~ 474 (656)
++. +|.+++..|...+...++.+..+
T Consensus 224 ~P~-m~~dI~~~N~~~~l~~i~~~~~~ 249 (279)
T COG0287 224 DPE-MYADIQLSNKEALLEAIERFAKS 249 (279)
T ss_pred ChH-HHHHHHHhCcHHHHHHHHHHHHH
Confidence 998 99999999999666667666654
No 34
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.56 E-value=8.1e-15 Score=155.64 Aligned_cols=252 Identities=18% Similarity=0.192 Sum_probs=155.1
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCC--EEEEECCCC-ChhHHHHcCCe---ecCHHHHhccCCEEEEccCCCcccccccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYA-PADKARAVGVE---LVSFDQALATADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~--~Vi~~d~~~-~~~~a~~~g~~---~~~l~ell~~aDvV~l~~Plt~~T~~li~ 302 (656)
.++|+|||+|.||+++|+.++..|. +|++||++. ..+.+.+.|+. ..++++.+++||+|++|+|.. .+..++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-~~~~v~- 83 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-ASGAVA- 83 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-HHHHHH-
Confidence 4689999999999999999998774 899999875 34555666642 236888899999999999953 233333
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcC-CeEEEEeeccCCC---CCCCCCccccCCcEEEcCCCCCCcHHHHH
Q 006212 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALDSG-VVAQAALDVFTEE---PPAKDSKLVQHENVTVTPHLGASTKEAQE 378 (656)
Q Consensus 303 ~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g-~i~gA~lDV~~~E---P~~~~~~L~~~~nvilTPH~g~~T~ea~~ 378 (656)
++....++++++|+|++..+.-..+++.+.+..+ ++.++ --+++.| |......||...++++||+.++. .++.+
T Consensus 84 ~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~-hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~-~~~~~ 161 (307)
T PRK07502 84 AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPG-HPLAGTEHSGPDAGFAELFENRWCILTPPEGTD-PAAVA 161 (307)
T ss_pred HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeC-CCCCCCcccchhhcCHHHHCCCeEEEeCCCCCC-HHHHH
Confidence 3344568999999999875543334444433332 12111 0122221 11234578999999999976543 33322
Q ss_pred HHHHHHHHHHHHHHcCCCCCccccC-----------CCCChhhhhhccchHH-HHHHHhHHHHHhhcCCCCceEEEEEEe
Q 006212 379 GVAIEIAEAVVGALRGELSATAINA-----------PMVPSEVLSELAPYVV-LAKKLGRLAVQLVSGGSGIKSVKLIYR 446 (656)
Q Consensus 379 ~~~~~~~~~i~~~l~g~~~~~~Vn~-----------p~~~~~~~~~l~p~~~-laerlG~l~~qL~~g~~~~k~i~i~~~ 446 (656)
.+..+++.-.....+-. -|+|+-+...+..... +..........+++| +|+++++++.
T Consensus 162 --------~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~lph~~a~~l~~~~~~~~~~~~~~~~~~~~~--gfrd~tRia~ 231 (307)
T PRK07502 162 --------RLTAFWRALGARVEEMDPEHHDLVLAITSHLPHLIAYTIVGTADDLERVTESEVIKYSAS--GFRDFTRIAA 231 (307)
T ss_pred --------HHHHHHHHcCCEEEEcCHHHHhHHHHHHhhHHHHHHHHHHHHHhhhcccchHHHHHhccc--cccccccccc
Confidence 23333332222222211 1333322222211110 000001112357777 9999999999
Q ss_pred ecCCCCCcccccccHHHHHHhhhhhhhccccccchHhHhhccCceEEEE
Q 006212 447 SARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEE 495 (656)
Q Consensus 447 Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~iAke~GI~v~~~ 495 (656)
|++. +|.++...|+..+...|+.+....-.+.++..-.++..+.-.|.
T Consensus 232 ~~~~-~w~~i~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~ 279 (307)
T PRK07502 232 SDPT-MWRDVFLHNKDAVLEMLGRFTEDLAALQRAIRWGDGDALFDLFT 279 (307)
T ss_pred CChH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9998 99999999998887788888877667777776666556554444
No 35
>PLN02494 adenosylhomocysteinase
Probab=99.54 E-value=2e-14 Score=158.47 Aligned_cols=121 Identities=21% Similarity=0.299 Sum_probs=107.1
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHcCCeecCHHHHhccCCEEEEccCCCcccccccc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~ 302 (656)
+..+.||+++|+|+|.||+.+|+++++||++|+++++... ...+...|+..++++++++.+|+|+.+ ..++++++
T Consensus 249 ~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~t----TGt~~vI~ 324 (477)
T PLN02494 249 DVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVTT----TGNKDIIM 324 (477)
T ss_pred CCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEEC----CCCccchH
Confidence 3458999999999999999999999999999999987753 345677788878899999999999973 44788999
Q ss_pred HHHHhcCCCCcEEEEcCC-CchhcHHHHHHh--HhcCCeEEEEeeccCCC
Q 006212 303 DETFAKMKKGVRIVNVAR-GGVIDEEALVRA--LDSGVVAQAALDVFTEE 349 (656)
Q Consensus 303 ~~~l~~mK~gailINvaR-g~ivde~aL~~a--L~~g~i~gA~lDV~~~E 349 (656)
.+.|+.||+|++|+|+|| +..||+++|.++ ++.+.+. +++|+|..+
T Consensus 325 ~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~ 373 (477)
T PLN02494 325 VDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFP 373 (477)
T ss_pred HHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcC
Confidence 999999999999999999 678999999987 8888886 999999987
No 36
>PLN02256 arogenate dehydrogenase
Probab=99.52 E-value=2.5e-14 Score=151.81 Aligned_cols=233 Identities=15% Similarity=0.167 Sum_probs=146.4
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeec-CHHHHh-ccCCEEEEccCCCccccccccH
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQAL-ATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~-~l~ell-~~aDvV~l~~Plt~~T~~li~~ 303 (656)
+-++++|||||+|.||+++|+.++..|++|++||+....+.+...|+... ++++++ .++|+|++|+|. ..+..++.+
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~-~~~~~vl~~ 111 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSI-LSTEAVLRS 111 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCH-HHHHHHHHh
Confidence 34678999999999999999999999999999998864455666777543 678876 479999999994 456666654
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCC---CCccccCCcEEEcCCC---CCCcHHHH
Q 006212 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAK---DSKLVQHENVTVTPHL---GASTKEAQ 377 (656)
Q Consensus 304 ~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~---~~~L~~~~nvilTPH~---g~~T~ea~ 377 (656)
-....++++++|+|++.++-...+++.+.+..+. .+....|... ....+...+++++|+. ...+.++.
T Consensus 112 l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~------~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 185 (304)
T PLN02256 112 LPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEF------DILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARC 185 (304)
T ss_pred hhhhccCCCCEEEecCCchHHHHHHHHHhCCCCC------eEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHH
Confidence 3355689999999999976655666666554431 1222333221 1134555556666542 22233322
Q ss_pred HHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhhcc------chHHHHHHHhHHH---HHhhcCCCCceEEEEEEe--
Q 006212 378 EGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELA------PYVVLAKKLGRLA---VQLVSGGSGIKSVKLIYR-- 446 (656)
Q Consensus 378 ~~~~~~~~~~i~~~l~g~~~~~~Vn~p~~~~~~~~~l~------p~~~laerlG~l~---~qL~~g~~~~k~i~i~~~-- 446 (656)
+.+.++++.-..+... ++++.++.+. |++ ++..+..+. ..+++| +|++.+++..
T Consensus 186 --------~~l~~l~~~lGa~v~~----~~~eeHD~~vA~iShLpH~-la~~L~~~~~~~~~~~~~--gfrd~tria~r~ 250 (304)
T PLN02256 186 --------ERFLDIFEEEGCRMVE----MSCEEHDRYAAGSQFITHT-VGRILGKMELESTPINTK--GYETLLRLVENT 250 (304)
T ss_pred --------HHHHHHHHHCCCEEEE----eCHHHHhHHHHhhhhHHHH-HHHHHHHcCCcccccccc--cHHHHHHHHHhh
Confidence 2333333322222222 2233333222 121 111111111 256677 8999988876
Q ss_pred --ecCCCCCcccccccHHHHHHhhhhhhhccccccchH
Q 006212 447 --SARDPDDLDTRILRAMITKGIIEPISASFINLVNAD 482 (656)
Q Consensus 447 --Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~ 482 (656)
+++. +|.+++..|+..+ ..|+.+.+....+.++.
T Consensus 251 ~~~~p~-lw~dI~~~N~~~~-~~i~~~~~~l~~~~~~l 286 (304)
T PLN02256 251 SSDSFD-LYYGLFMYNPNAT-EELERLELAFDSVKKQL 286 (304)
T ss_pred cCCCHH-HHHHHHHHChHHH-HHHHHHHHHHHHHHHHH
Confidence 9998 9999999999888 77877777644444443
No 37
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.51 E-value=2e-14 Score=150.26 Aligned_cols=237 Identities=18% Similarity=0.196 Sum_probs=139.3
Q ss_pred EEEEEecChhHHHHHHHHhcCCC--EEEEECCCC-ChhHHHHcCCe--ecCHHHHhccCCEEEEccCCCccccccccHHH
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYA-PADKARAVGVE--LVSFDQALATADFISLHMPLNPTTSKIFNDET 305 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~--~Vi~~d~~~-~~~~a~~~g~~--~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~ 305 (656)
+|+|||+|.||+++|+.++..|. +|++||++. ..+.+.+.|+. ..+++++. +||+|++|+|.. .+..++ .+.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~-~~~~~~-~~l 78 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVD-AIIEIL-PKL 78 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHH-HHHHHH-HHH
Confidence 79999999999999999997774 899999875 33455666753 33677765 599999999943 344444 334
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEE----EEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHH
Q 006212 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQ----AALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVA 381 (656)
Q Consensus 306 l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~g----A~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~ 381 (656)
.. ++++++|+|++.-..--.+.+.+. ..+.+.+ +|...++.+ .+...|++...++++|.-+. +.+..+
T Consensus 79 ~~-l~~~~iv~d~gs~k~~i~~~~~~~-~~~~~v~~hPmaG~e~~Gp~--~a~~~l~~g~~~il~~~~~~-~~~~~~--- 150 (275)
T PRK08507 79 LD-IKENTTIIDLGSTKAKIIESVPKH-IRKNFIAAHPMAGTENSGPK--AAIKGLYEGKVVVLCDVEKS-GEKHQE--- 150 (275)
T ss_pred hc-cCCCCEEEECccchHHHHHHHHHh-cCCCEEecCCcCcCchhhHH--hccHHHhCCCeEEEecCCCC-CHHHHH---
Confidence 45 889999999876432222222221 1122212 111112211 23335788888999996433 222222
Q ss_pred HHHHHHHHHHHcCCCCCccccCCCCChhhhhhcc------chH---HHHHHH-----hHHHHHhhcCCCCceEEEEEEee
Q 006212 382 IEIAEAVVGALRGELSATAINAPMVPSEVLSELA------PYV---VLAKKL-----GRLAVQLVSGGSGIKSVKLIYRS 447 (656)
Q Consensus 382 ~~~~~~i~~~l~g~~~~~~Vn~p~~~~~~~~~l~------p~~---~laerl-----G~l~~qL~~g~~~~k~i~i~~~G 447 (656)
.+..+.+.+... .. .++++.++++. |++ .+++.+ ......++++ +|++.++++.+
T Consensus 151 --~v~~l~~~~G~~---~~----~~~~~~hD~~~a~vs~lph~~a~~l~~~~~~~~~~~~~~~~~~~--gfrd~tria~~ 219 (275)
T PRK08507 151 --RAKEIFSGLGMR---IV----YMDAKEHDLHAAYISHLPHIISFALANTVLKEEDERNIFDLAGG--GFRSMSRLAKS 219 (275)
T ss_pred --HHHHHHHHhCCE---EE----EeCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCChHHHHhhccc--chhhhhhcccC
Confidence 223333333211 11 11222222211 211 111111 1122456777 89999999999
Q ss_pred cCCCCCcccccccHHHHHHhhhhhhhccccccchHhHhhccCc
Q 006212 448 ARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGL 490 (656)
Q Consensus 448 s~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~iAke~GI 490 (656)
++. +|.++...|+..+...|+.+....-.+.++..--++..+
T Consensus 220 ~p~-l~~~i~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~~ 261 (275)
T PRK08507 220 SPA-MWSDIFKQNKENVLEAIDEFIKELEQFKQLIENEDWEEL 261 (275)
T ss_pred CHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 998 999999999987777888877765555555543333333
No 38
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.46 E-value=7.5e-14 Score=155.23 Aligned_cols=237 Identities=18% Similarity=0.193 Sum_probs=154.9
Q ss_pred CEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCCCh--hHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccHHH
Q 006212 230 KTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDET 305 (656)
Q Consensus 230 ktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~~~--~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~ 305 (656)
++|+||| +|.||+++|+.++..|++|.+||++... +.+.+.|+... ++++.+.+||+|++|+|. ..+..++ .+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~-~~~~~vl-~~l 78 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPI-NVTEDVI-KEV 78 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCH-HHHHHHH-HHH
Confidence 3799997 9999999999999999999999987532 44566677654 688899999999999995 3445555 444
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCC-CCCccccCCcEEEcCCCCCCcHHHHHHHHHHH
Q 006212 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA-KDSKLVQHENVTVTPHLGASTKEAQEGVAIEI 384 (656)
Q Consensus 306 l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~-~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~ 384 (656)
...++++++|+|+++.+....+++.+.+..+. .+.+..|+. ...+++....+++||+-+. +.+ .
T Consensus 79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~------~~V~~HPmaGp~~~~~~g~~~il~p~~~~-~~~--------~ 143 (437)
T PRK08655 79 APHVKEGSLLMDVTSVKERPVEAMEEYAPEGV------EILPTHPMFGPRTPSLKGQVVILTPTEKR-SNP--------W 143 (437)
T ss_pred HhhCCCCCEEEEcccccHHHHHHHHHhcCCCC------EEEEcCCCCCCCCcccCCCEEEEecCCCC-CHH--------H
Confidence 56689999999999866555566655554321 223334442 2346888999999997532 222 2
Q ss_pred HHHHHHHHcCCCCCccccCCCCChhhhhhcc------ch------HHHHHHHh---HHHHHhhcCCCCceEE----EEEE
Q 006212 385 AEAVVGALRGELSATAINAPMVPSEVLSELA------PY------VVLAKKLG---RLAVQLVSGGSGIKSV----KLIY 445 (656)
Q Consensus 385 ~~~i~~~l~g~~~~~~Vn~p~~~~~~~~~l~------p~------~~laerlG---~l~~qL~~g~~~~k~i----~i~~ 445 (656)
++.+.++++.......+ +.++.++.+. |+ .....++| ..+.+++++ +|++. ++++
T Consensus 144 ~~~v~~ll~~~G~~v~~----~~~e~HD~~~a~vs~lph~~a~al~~~l~~~g~~~~~~~~~a~~--~frd~~~~~tRIa 217 (437)
T PRK08655 144 FDKVKNFLEKEGARVIV----TSPEEHDRIMSVVQGLTHFAYISIASTLKRLGVDIKESRKFASP--IYELMIDIIGRIL 217 (437)
T ss_pred HHHHHHHHHHcCCEEEE----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhcCh--hhHHHHHHHHHHh
Confidence 23344444433322222 1222222221 11 11122223 233467777 89985 9999
Q ss_pred eecCCCCCcccccccHHHHHHhhhhhhhccccccchHhHhhccCce
Q 006212 446 RSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLR 491 (656)
Q Consensus 446 ~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~iAke~GI~ 491 (656)
++++. +|.+++..|.. +...|+.+..+.-.+.++..-.++..+.
T Consensus 218 ~~~p~-lw~dI~~~N~~-~~~~l~~~~~~l~~l~~~l~~~D~~~l~ 261 (437)
T PRK08655 218 GQNPY-LYASIQMNNPQ-IPEIHETFIKECEELSELVKNGDREEFV 261 (437)
T ss_pred cCCHH-HHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99998 99999999994 6677877777655666655544444443
No 39
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=99.46 E-value=2.5e-13 Score=148.67 Aligned_cols=121 Identities=26% Similarity=0.389 Sum_probs=105.8
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeecCHHHHhccCCEEEEccCCCcccccccc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~ 302 (656)
+..+.|++|+|+|+|.||+.+|++++++|++|+++|..+ ....+...|+...+++++++.+|+|+.++. +.++++
T Consensus 190 ~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVVItaTG----~~~vI~ 265 (406)
T TIGR00936 190 NLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIFITATG----NKDVIR 265 (406)
T ss_pred CCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEEEECCC----CHHHHH
Confidence 446899999999999999999999999999999997665 334566678877889999999999988654 678899
Q ss_pred HHHHhcCCCCcEEEEcCCCch-hcHHHHHHhHhcCCeEEEEeeccCC
Q 006212 303 DETFAKMKKGVRIVNVARGGV-IDEEALVRALDSGVVAQAALDVFTE 348 (656)
Q Consensus 303 ~~~l~~mK~gailINvaRg~i-vde~aL~~aL~~g~i~gA~lDV~~~ 348 (656)
.+.+..||+|++|+|+||+.+ ||.++|.+++.+....+..+|+|.-
T Consensus 266 ~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~ 312 (406)
T TIGR00936 266 GEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL 312 (406)
T ss_pred HHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence 999999999999999999998 9999999988877777899998874
No 40
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.45 E-value=1.5e-13 Score=145.10 Aligned_cols=93 Identities=25% Similarity=0.422 Sum_probs=82.5
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccH
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~ 303 (656)
..|+||||||||+|.||+.+|++|+++||+|++||+.. +.+.+...|++..++++++++||+|++|+|. ++++++++.
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd-~~t~~V~~~ 90 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPD-EQQAHVYKA 90 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCC-hHHHHHHHH
Confidence 57999999999999999999999999999999997543 4455667788888999999999999999996 678999999
Q ss_pred HHHhcCCCCcEEEEc
Q 006212 304 ETFAKMKKGVRIVNV 318 (656)
Q Consensus 304 ~~l~~mK~gailINv 318 (656)
+.+..||+|++|+-.
T Consensus 91 eil~~MK~GaiL~f~ 105 (335)
T PRK13403 91 EVEENLREGQMLLFS 105 (335)
T ss_pred HHHhcCCCCCEEEEC
Confidence 999999999988653
No 41
>PLN02712 arogenate dehydrogenase
Probab=99.40 E-value=6.8e-13 Score=154.22 Aligned_cols=238 Identities=15% Similarity=0.148 Sum_probs=147.7
Q ss_pred cccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeec-CHHHHhc-cCCEEEEccCCCcccccc
Q 006212 223 VGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALA-TADFISLHMPLNPTTSKI 300 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~-~l~ell~-~aDvV~l~~Plt~~T~~l 300 (656)
.|.++.+++|||||+|+||+++|++++++|++|++||+....+.+.+.|+... ++++++. ++|+|++|+| ...+..+
T Consensus 363 ~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP-~~~~~~v 441 (667)
T PLN02712 363 CVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTS-ILSTEKV 441 (667)
T ss_pred ccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCC-hHHHHHH
Confidence 46788999999999999999999999999999999998754455666787544 7888876 5999999999 4567777
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCC-eEEEEeeccCCCCC----CCCCccccCCcEEEcCCCCCCcHH
Q 006212 301 FNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGV-VAQAALDVFTEEPP----AKDSKLVQHENVTVTPHLGASTKE 375 (656)
Q Consensus 301 i~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~-i~gA~lDV~~~EP~----~~~~~L~~~~nvilTPH~g~~T~e 375 (656)
+.+.....||+|++|+|+++++-...+.+.+.+..+. +.+ +-=.++.|-. ....-||+. .++.++ .+
T Consensus 442 i~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~-~HPm~G~e~~~~G~~~~~~lf~~-~~v~~~------~~ 513 (667)
T PLN02712 442 LKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILC-THPMFGPESGKNGWNNLAFVFDK-VRIGSD------DR 513 (667)
T ss_pred HHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEe-eCCCCCccccccchhhhhhhccC-cEeCCC------cc
Confidence 7765555699999999999987555556555554432 221 0112222210 011124433 222221 11
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhhccchHH-HHHHHhHHHH-------HhhcCCCCceEEE----E
Q 006212 376 AQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELAPYVV-LAKKLGRLAV-------QLVSGGSGIKSVK----L 443 (656)
Q Consensus 376 a~~~~~~~~~~~i~~~l~g~~~~~~Vn~p~~~~~~~~~l~p~~~-laerlG~l~~-------qL~~g~~~~k~i~----i 443 (656)
. .+.++.+.+++.....+.. .++++.++...-+.. +-.-+|.... .++++ +|++++ +
T Consensus 514 ~-----~~~~~~l~~l~~~lGa~vv----~ms~eeHD~~~A~vShLpHlla~~L~~~~~~~~~~~~~--gfr~l~~Li~R 582 (667)
T PLN02712 514 R-----VSRCDSFLDIFAREGCRMV----EMSCAEHDWHAAGSQFITHTMGRLLEKLGLESTPINTK--GYETLLNLVEN 582 (667)
T ss_pred h-----HHHHHHHHHHHHHcCCEEE----EeCHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccccH--HHHHHHHHHHh
Confidence 1 1122233344433332222 334444443322111 1112333333 23345 788887 9
Q ss_pred EEeecCCCCCcccccccHHHHHHhhhhhhhccccccchH
Q 006212 444 IYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNAD 482 (656)
Q Consensus 444 ~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~ 482 (656)
++++++. +|+++...|... ...|+.+....-.+.++.
T Consensus 583 ia~~~p~-l~~dI~~~N~~a-~~~l~~f~~~l~~~~~~l 619 (667)
T PLN02712 583 TAGDSFD-LYYGLFMYNVNA-MEQLERLDLAFESLKKQL 619 (667)
T ss_pred hcCCCHH-HHHHHHHHChHH-HHHHHHHHHHHHHHHHHH
Confidence 9999998 999999999988 567877776644444444
No 42
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=99.31 E-value=2.5e-11 Score=133.74 Aligned_cols=211 Identities=20% Similarity=0.253 Sum_probs=140.0
Q ss_pred HhHHHHhhcCC-cEEEecCCCHhHHHh----hc--CCCeEEEEcCCCCCCHHHHHhc---CCcceeEE-ecccccCcc-c
Q 006212 101 EAGLAILRSFG-NVECLYDLSPEALCE----KI--SQCDALIVRSGTKVTRSVFEAA---NGKLKVVG-RAGVGIDNV-D 168 (656)
Q Consensus 101 ~~~~~~l~~~~-~v~~~~~~~~eel~~----~i--~~~d~liv~~~~~v~~e~l~~~---~~~LK~I~-~~g~GvD~i-D 168 (656)
+.....|.+.+ .|......+.+|... .+ ...|+++ ..+..++.-+-... .++++-++ -.++|+..+ .
T Consensus 87 d~vaaaL~~~gi~v~a~~~~~~~ey~~~~~~~l~~~~p~iii-DdGgdl~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~ 165 (425)
T PRK05476 87 DDVAAALAAAGIPVFAWKGETLEEYWECIERALDGHGPNMIL-DDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYA 165 (425)
T ss_pred HHHHHHHHHCCceEEecCCCCHHHHHHHHHHHhcCCCCCEEE-ecccHHHHHHHHHhhHhHhccEeeeecchHHHHHHHH
Confidence 45555565543 443334456665422 22 2345444 44433433332221 12333332 468888875 3
Q ss_pred hhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccc-cccccccCCCEEEEEecChhHHHHHHH
Q 006212 169 LQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS-KYVGVSLVGKTLAVMGFGKVGSEVARR 247 (656)
Q Consensus 169 ~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~-~~~g~~l~gktvGIIGlG~IG~~vA~~ 247 (656)
+....+.+++|.|++..++...-|...+. ..+-|+.- ...+..+.|++++|+|+|.||+.+|++
T Consensus 166 ~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt---------------~~s~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~ 230 (425)
T PRK05476 166 MAKDGALKFPAINVNDSVTKSKFDNRYGT---------------GESLLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQR 230 (425)
T ss_pred HHHcCCCCCCEEecCCcccCccccccHHH---------------HhhhHHHHHHhccCCCCCCEEEEECCCHHHHHHHHH
Confidence 44445678999999999887755533221 12223210 012456899999999999999999999
Q ss_pred HhcCCCEEEEECCCC-ChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCch-hc
Q 006212 248 AKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV-ID 325 (656)
Q Consensus 248 lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~i-vd 325 (656)
++++|++|+++|+.. ....+...|+...+++++++.+|+|+.++. +.++++.+.+..||+|++++|+|+... +|
T Consensus 231 lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVVI~aTG----~~~vI~~~~~~~mK~GailiNvG~~d~Eid 306 (425)
T PRK05476 231 LRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIFVTATG----NKDVITAEHMEAMKDGAILANIGHFDNEID 306 (425)
T ss_pred HHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEEEECCC----CHHHHHHHHHhcCCCCCEEEEcCCCCCccC
Confidence 999999999999775 334455668887789999999999988763 567899999999999999999999765 56
Q ss_pred HHHHHH
Q 006212 326 EEALVR 331 (656)
Q Consensus 326 e~aL~~ 331 (656)
.++|.+
T Consensus 307 ~~~L~~ 312 (425)
T PRK05476 307 VAALEE 312 (425)
T ss_pred hHHHhh
Confidence 776643
No 43
>COG1760 SdaA L-serine deaminase [Amino acid transport and metabolism]
Probab=99.30 E-value=8.8e-15 Score=148.93 Aligned_cols=196 Identities=18% Similarity=0.128 Sum_probs=176.4
Q ss_pred HHHHHHhHHHHHhhcCCCC---ceEEEEEEeecCCCCCcccccccHHHHHHhhhhhhhccccccchHhHhhccCceEEEE
Q 006212 419 VLAKKLGRLAVQLVSGGSG---IKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEE 495 (656)
Q Consensus 419 ~laerlG~l~~qL~~g~~~---~k~i~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~iAke~GI~v~~~ 495 (656)
.-+.|+|+.+++|.+. - ++++.+.+.++++ .++.++.++.|.+.|.+ ++...+.++.+.+.++.++||..++.
T Consensus 55 aGa~rigr~A~~l~~~--~~~~~~~v~~~a~a~~e-ena~Gg~~~~Apt~Ga~-G~~P~vl~~~~~~~~a~~~~i~~fl~ 130 (262)
T COG1760 55 AGALRIGRRARALFGE--LKNVPDWVNIYAYASFE-ENAAGGGTVTAPTAGAL-GIIPAVLRIKESFEIAAEKGIKIFLL 130 (262)
T ss_pred cccceechhHHHHHHH--HhhhhHHHHHHHHHhhH-hhccCCcEeeeccCccc-cCCcchHHHHHHhhhhhhhhhHhhhh
Confidence 3556888888888876 5 7899999999998 99999999999999999 56666799999999999999998887
Q ss_pred EeecCCCCCCCCceEEEEEEecccccceecCCCcEEEEEEEEEC-CeeEEEEEcceeEEeecCccEEEEEecCCCCchhh
Q 006212 496 RVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKF-GIPHLTRVGSFGVDASLEGNLILCRQVDQPGMIGK 574 (656)
Q Consensus 496 ~~~~~~~~~~~~ntv~i~l~~~~~~~~~~~~~~~~~~v~Gt~~g-G~~rI~~IdGf~V~~~g~~~~Llv~~~D~PGvIa~ 574 (656)
.+...+ ..|+|+.+|... +++...+.|.+.| |.+.+++++|+.+++++..+++.+.|. +|++..
T Consensus 131 ~a~aig--~~~~nnAsIsga-----------e~gcq~evGsa~~maaa~l~el~Ggs~~q~~~a~~i~~~h~--lGltcd 195 (262)
T COG1760 131 TAGAIG--ALHPNNASISGA-----------EGGCQGEVGSAIGMGAAALTELNGGSPEQSGNAPEIAMEHN--LGLTCD 195 (262)
T ss_pred hccccc--ccccCcceEEec-----------cCceEEEeehhhhhHHHHHHHHhCCChHHhccccHHHHhcC--CCceeh
Confidence 665432 479999999864 5888999999998 789999999999999999999999997 999999
Q ss_pred -HHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHHhcCCCccEEEEEeec
Q 006212 575 -VGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTLLHVS 633 (656)
Q Consensus 575 -V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L~~~~~V~~v~~v~l~ 633 (656)
|+.++....||++.|...|...+.++.|+++.|..+.+++++.+++++...+++|.+.+
T Consensus 196 pVaglV~vpcI~rnam~a~rai~aa~~am~~~~~~~~~DevI~tM~~~g~~m~~~y~et~ 255 (262)
T COG1760 196 PVAGLVQVPCINRNAMGAVRAINGAKAAMAIEVDQRPLDEVIETMYETGKDMNVKYRETS 255 (262)
T ss_pred hhhchhhhhhhhHHHHHHHHHhhhhhhhheecCCCCChHHHHHHHHHhhhhcchhheecc
Confidence 99999999999999999999999999999999999999999999999999999998753
No 44
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.27 E-value=1.1e-11 Score=135.43 Aligned_cols=226 Identities=14% Similarity=0.098 Sum_probs=142.4
Q ss_pred CCCEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHH
Q 006212 228 VGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETF 306 (656)
Q Consensus 228 ~gktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l 306 (656)
..++|+||| +|.||+++|+.++..|+.|.+||+... .+.++++++||+|++|+|... +..++ ++ +
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-----------~~~~~~~~~aDlVilavP~~~-~~~~~-~~-l 162 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-----------DRAEDILADAGMVIVSVPIHL-TEEVI-AR-L 162 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-----------hhHHHHHhcCCEEEEeCcHHH-HHHHH-HH-H
Confidence 558999999 999999999999999999999997521 246778899999999999553 45555 23 3
Q ss_pred hcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCC-CCccccCCcEEEcCCCCCCcHHHHHHHHHHHH
Q 006212 307 AKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAK-DSKLVQHENVTVTPHLGASTKEAQEGVAIEIA 385 (656)
Q Consensus 307 ~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~-~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~ 385 (656)
..+++|++|+|+++.+..-..++.+.+. +.+ .+..|+.. ....+....++++|+. ..++.+ .+
T Consensus 163 ~~l~~~~iv~Dv~SvK~~~~~~~~~~~~-~~f-------vg~HPm~G~~~~~~~~~~vv~~~~~---~~~~~~-----~~ 226 (374)
T PRK11199 163 PPLPEDCILVDLTSVKNAPLQAMLAAHS-GPV-------LGLHPMFGPDVGSLAKQVVVVCDGR---QPEAYQ-----WL 226 (374)
T ss_pred hCCCCCcEEEECCCccHHHHHHHHHhCC-CCE-------EeeCCCCCCCCcccCCCEEEEcCCC---CchHHH-----HH
Confidence 4489999999998865433444444332 222 22333321 1234556678888742 223222 22
Q ss_pred HHHHHHHcCCCCCccccCCCCChhhhhhcc------chH-HHHH--HHh------HHHHHhhcCCCCceE----EEEEEe
Q 006212 386 EAVVGALRGELSATAINAPMVPSEVLSELA------PYV-VLAK--KLG------RLAVQLVSGGSGIKS----VKLIYR 446 (656)
Q Consensus 386 ~~i~~~l~g~~~~~~Vn~p~~~~~~~~~l~------p~~-~lae--rlG------~l~~qL~~g~~~~k~----i~i~~~ 446 (656)
..+...+..... .+.++.++.+. |++ .++. .++ .....+.++ +|++ ++++++
T Consensus 227 ~~l~~~lG~~v~-------~~~~~~HD~~~a~vshLpH~~a~al~~~l~~~~~~~~~~~~~~~~--~fr~~la~~tRia~ 297 (374)
T PRK11199 227 LEQIQVWGARLH-------RISAVEHDQNMAFIQALRHFATFAYGLHLAKENVDLEQLLALSSP--IYRLELAMVGRLFA 297 (374)
T ss_pred HHHHHHCCCEEE-------ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhcCh--HHHHHHHHHHHHHc
Confidence 333333322221 23333333322 221 1111 111 111234555 7999 999999
Q ss_pred ecCCCCCcccccccHHHHHHhhhhhhhccccccchHhHhhccCceEEE
Q 006212 447 SARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISE 494 (656)
Q Consensus 447 Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~iAke~GI~v~~ 494 (656)
+++. +|.+++..|...+ ..|+.+......+.++..-.++..+.-.|
T Consensus 298 ~~p~-lw~dI~~~N~~~~-~~l~~~~~~l~~l~~~l~~~d~~~l~~~~ 343 (374)
T PRK11199 298 QDPQ-LYADIIMSSPENL-ALIKRYYQRFGEALELLEQGDKQAFIDSF 343 (374)
T ss_pred CCHH-HHHHHHHhChhHH-HHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9998 9999999999988 88888887766777777655555554433
No 45
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.24 E-value=1.6e-11 Score=145.23 Aligned_cols=219 Identities=18% Similarity=0.200 Sum_probs=139.0
Q ss_pred CEEEEEecChhHHHHHHHHhcCC--CEEEEECCCC-ChhHHHHcCCe---ecCHHHHhccCCEEEEccCCCccccccccH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYA-PADKARAVGVE---LVSFDQALATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G--~~Vi~~d~~~-~~~~a~~~g~~---~~~l~ell~~aDvV~l~~Plt~~T~~li~~ 303 (656)
++|+|||+|.||+++|+.++..| .+|++||++. ..+.+.+.|+. ..+++++++++|+|++|+|.. .+..++ +
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl-~ 81 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVL-A 81 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHH-H
Confidence 68999999999999999999887 5899999886 34555667763 336888899999999999943 334333 2
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCC---------CCCCccccCCcEEEcCCCCCCcH
Q 006212 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPP---------AKDSKLVQHENVTVTPHLGASTK 374 (656)
Q Consensus 304 ~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~---------~~~~~L~~~~nvilTPH~g~~T~ 374 (656)
.....++++++|+|++..+....+.+.+.+.... ..+....|. +++..||...++++||+.... .
T Consensus 82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~-----~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~-~ 155 (735)
T PRK14806 82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELP-----AGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETD-P 155 (735)
T ss_pred HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccC-----CeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCC-H
Confidence 2334578899999999755333444544443321 233444553 234579999999999975443 3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcc-ccC----------CCCChhhhhhccchHHHHHHH-----hHHHHHhhcCCCCc
Q 006212 375 EAQEGVAIEIAEAVVGALRGELSATA-INA----------PMVPSEVLSELAPYVVLAKKL-----GRLAVQLVSGGSGI 438 (656)
Q Consensus 375 ea~~~~~~~~~~~i~~~l~g~~~~~~-Vn~----------p~~~~~~~~~l~p~~~laerl-----G~l~~qL~~g~~~~ 438 (656)
+..+ .+.++++.-..... ++. -|+|+... ..+++.+ ...+..++++ +|
T Consensus 156 ~~~~--------~~~~l~~~~G~~~~~~~~~~hD~~~a~~~~~ph~~~------~~l~~~l~~~~~~~~~~~~a~~--~f 219 (735)
T PRK14806 156 AALA--------RVDRLWRAVGADVLHMDVAHHDEVLAATSHLPHLLA------FSLVDQLANREDNLDIFRYAAG--GF 219 (735)
T ss_pred HHHH--------HHHHHHHHcCCEEEEcCHHHHhHHHHHhcchHHHHH------HHHHHHHhhcCChhHHHhhhcc--ch
Confidence 3222 22233322221111 110 13333111 1111111 1234578888 89
Q ss_pred eEEEEEEeecCCCCCcccccccHHHHHHhhhhhhh
Q 006212 439 KSVKLIYRSARDPDDLDTRILRAMITKGIIEPISA 473 (656)
Q Consensus 439 k~i~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~ 473 (656)
++.++.+.+++. +|.++..+|...+...|+.+..
T Consensus 220 ~~~tRia~~~p~-~~~di~~~n~~~~~~~l~~~~~ 253 (735)
T PRK14806 220 RDFTRIAASDPV-MWHDIFLANKEAVLRALDHFRD 253 (735)
T ss_pred hcccccccCCHH-HHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999998 9999999998766555555544
No 46
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.24 E-value=1.5e-11 Score=118.95 Aligned_cols=109 Identities=22% Similarity=0.330 Sum_probs=85.6
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-CHHHHhccCCEEEEccCCCcccccccc-HHHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN-DETF 306 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~-~~~l 306 (656)
++|||||+|.||+.+|++|...|++|.+||++. ..+.+.+.|+..+ ++.+++++||+|++|+|..++++.++. ...+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence 589999999999999999999999999999886 3455666777665 899999999999999998777777652 2267
Q ss_pred hcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 307 AKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 307 ~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
..+++|.++||++....-....+.+.+.+..+
T Consensus 82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~ 113 (163)
T PF03446_consen 82 AGLRPGKIIIDMSTISPETSRELAERLAAKGV 113 (163)
T ss_dssp GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTE
T ss_pred hccccceEEEecCCcchhhhhhhhhhhhhccc
Confidence 78999999999999998888888888877555
No 47
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.24 E-value=1.1e-12 Score=136.25 Aligned_cols=225 Identities=19% Similarity=0.143 Sum_probs=137.7
Q ss_pred HHHHHhcCC--CEEEEECCCC-ChhHHHHcCCee--cCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEc
Q 006212 244 VARRAKGLG--MNVIAHDPYA-PADKARAVGVEL--VSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNV 318 (656)
Q Consensus 244 vA~~lk~~G--~~Vi~~d~~~-~~~~a~~~g~~~--~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINv 318 (656)
+|+.|+..| .+|++||++. ..+.+.+.|+.. .+-.+.++++|+|++|+|.. .+..++ ++....+++|++|+|+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~-~~~~~l-~~~~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVS-AIEDVL-EEIAPYLKPGAIVTDV 78 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HH-HHHHHH-HHHHCGS-TTSEEEE-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHH-HHHHHH-HHhhhhcCCCcEEEEe
Confidence 577787666 8999999987 556677788742 33367899999999999943 344444 3344458999999999
Q ss_pred CCCchhcHHHHHHhHhc-C-CeEE---EEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 006212 319 ARGGVIDEEALVRALDS-G-VVAQ---AALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALR 393 (656)
Q Consensus 319 aRg~ivde~aL~~aL~~-g-~i~g---A~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~ 393 (656)
++-+---.+++.+.+.. . .+++ +|-+..+.+ .++..||+..++|+||+-... .+..+.+.++++
T Consensus 79 ~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~--~a~~~lf~g~~~il~p~~~~~---------~~~~~~~~~l~~ 147 (258)
T PF02153_consen 79 GSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPE--AADADLFEGRNWILCPGEDTD---------PEALELVEELWE 147 (258)
T ss_dssp -S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGG--G-TTTTTTTSEEEEEECTTS----------HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCcccceeecCCCCCCccccch--hhcccccCCCeEEEeCCCCCh---------HHHHHHHHHHHH
Confidence 98666555666666662 2 3333 555555555 567789999999999986432 223344555555
Q ss_pred CCCCCccccC-----------CCCChhhhhhccchHHHHHHHhHHHHHhhcCCCCceEEEEEEeecCCCCCcccccccHH
Q 006212 394 GELSATAINA-----------PMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAM 462 (656)
Q Consensus 394 g~~~~~~Vn~-----------p~~~~~~~~~l~p~~~laerlG~l~~qL~~g~~~~k~i~i~~~Gs~a~~~~~~~~~~~a 462 (656)
..+.+...-. .|+|+-+...+...+...........+++++ +|+++++++.+++. +|.+++..|+.
T Consensus 148 ~~Ga~~~~~~~eeHD~~~A~vshlpH~~a~al~~~~~~~~~~~~~~~~~a~~--~frd~tRia~~~p~-l~~~I~~~N~~ 224 (258)
T PF02153_consen 148 ALGARVVEMDAEEHDRIMAYVSHLPHLLASALANTLAELSSDDPDILRLAGG--GFRDMTRIASSDPE-LWADIFLSNPE 224 (258)
T ss_dssp HCT-EEEE--HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHGTH--HHHHHHGGGGS-HH-HHHHHHHHTHH
T ss_pred HCCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHhhcch--hHHhhcccccCChH-HHHHHHHHCHH
Confidence 4443322211 1333332222222111222222334567777 89999999999998 99999999999
Q ss_pred HHHHhhhhhhhccccccchHhH
Q 006212 463 ITKGIIEPISASFINLVNADFT 484 (656)
Q Consensus 463 ~l~GlL~~~~~~~vn~vNA~~i 484 (656)
.+...|+.+.....++.++..-
T Consensus 225 ~~~~~l~~~~~~L~~l~~~l~~ 246 (258)
T PF02153_consen 225 NLLEALDEFIKELNELREALEA 246 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 7777888888775555555543
No 48
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=99.23 E-value=5e-11 Score=114.61 Aligned_cols=104 Identities=33% Similarity=0.509 Sum_probs=76.9
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeecCHHHHhccCCEEEEccCCCcccccccc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~ 302 (656)
...+.||++.|+|||.+|+.+|++|+++|.+|++++..+ ..-+|...|++..+++++++++|+++.++- ...++.
T Consensus 18 ~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vtaTG----~~~vi~ 93 (162)
T PF00670_consen 18 NLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTATG----NKDVIT 93 (162)
T ss_dssp -S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-SS----SSSSB-
T ss_pred ceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEECCC----CccccC
Confidence 567899999999999999999999999999999998775 445677789999999999999999988765 456789
Q ss_pred HHHHhcCCCCcEEEEcCCCch-hcHHHHHH
Q 006212 303 DETFAKMKKGVRIVNVARGGV-IDEEALVR 331 (656)
Q Consensus 303 ~~~l~~mK~gailINvaRg~i-vde~aL~~ 331 (656)
.+.|.+||+|++|.|++.-.. +|.+.|.+
T Consensus 94 ~e~~~~mkdgail~n~Gh~d~Eid~~~L~~ 123 (162)
T PF00670_consen 94 GEHFRQMKDGAILANAGHFDVEIDVDALEA 123 (162)
T ss_dssp HHHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred HHHHHHhcCCeEEeccCcCceeEeeccccc
Confidence 999999999999999987543 35555533
No 49
>PLN02712 arogenate dehydrogenase
Probab=99.23 E-value=1.8e-11 Score=142.43 Aligned_cols=239 Identities=15% Similarity=0.168 Sum_probs=143.1
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeec-CHHHHh-ccCCEEEEccCCCccccccccHH
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQAL-ATADFISLHMPLNPTTSKIFNDE 304 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~-~l~ell-~~aDvV~l~~Plt~~T~~li~~~ 304 (656)
-+.++|||||+|+||+.+|+.++.+|++|++||+......+.+.|+... ++++++ .+||+|++|+|. ..+..++...
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~l 128 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKSL 128 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHhh
Confidence 3457899999999999999999999999999998865556777787654 788866 579999999994 4677777664
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCC---CccccCCcEEEcCCCCCCcHHHHHHHH
Q 006212 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKD---SKLVQHENVTVTPHLGASTKEAQEGVA 381 (656)
Q Consensus 305 ~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~---~~L~~~~nvilTPH~g~~T~ea~~~~~ 381 (656)
.+..||++++|+|+++-+..-.+++.+.+..+. ++....|+... ..-+....++++|.+.+...+ .
T Consensus 129 ~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~------~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~-----~ 197 (667)
T PLN02712 129 PLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDF------DIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEEL-----R 197 (667)
T ss_pred hhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCC------eEEeeCCcCCCccccchhccCcEEEeeccCCCccc-----c
Confidence 446689999999998766433445555454432 22333443211 112334447777755322111 1
Q ss_pred HHHHHHHHHHHcCCCCCccccCCCCChhhhhhccchHH-HHHHHhHHHHHhhcCCCCc---------eEEEEEEeecCCC
Q 006212 382 IEIAEAVVGALRGELSATAINAPMVPSEVLSELAPYVV-LAKKLGRLAVQLVSGGSGI---------KSVKLIYRSARDP 451 (656)
Q Consensus 382 ~~~~~~i~~~l~g~~~~~~Vn~p~~~~~~~~~l~p~~~-laerlG~l~~qL~~g~~~~---------k~i~i~~~Gs~a~ 451 (656)
.+.++.+.++++....+.. .++++.++.+.-++. |-.-+|+.+..+.-+..++ +-+++++.+++.
T Consensus 198 ~~~~~~l~~l~~~lGa~v~----~ms~eeHD~~~A~vshLpH~la~~L~~~~~~~~~~~~~~~~~~l~l~~Ria~~~p~- 272 (667)
T PLN02712 198 VSRCKSFLEVFEREGCKMV----EMSCTEHDKYAAESQFITHTVGRVLEMLKLESTPINTKGYESLLDLVENTCGDSFD- 272 (667)
T ss_pred HHHHHHHHHHHHHcCCEEE----EeCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCccHHHHHHHHHHHhcCCHH-
Confidence 1222333333332222221 334444444332221 1112333333222100011 124677889998
Q ss_pred CCcccccccHHHHHHhhhhhhhccccccchHh
Q 006212 452 DDLDTRILRAMITKGIIEPISASFINLVNADF 483 (656)
Q Consensus 452 ~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~ 483 (656)
+|+++...|+ .+...|+.+......+..+.+
T Consensus 273 L~~dI~~~N~-~~~~~l~~~~~~l~~~~~~l~ 303 (667)
T PLN02712 273 LYYGLFMYNK-NSLEMLERLDLAFEALRKQLF 303 (667)
T ss_pred HHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 445578887776555555554
No 50
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.22 E-value=4e-11 Score=125.46 Aligned_cols=123 Identities=20% Similarity=0.236 Sum_probs=102.8
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-C-hhHHHHcCCeec-CHHHHhccCCEEEEccCCCcccccccc--HH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-P-ADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN--DE 304 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~-~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~--~~ 304 (656)
.+|||||+|.||.+||++|...|+.|.+||+.. . .+.+.+.|.... +..+++++||+|++|+|..++.+.++. ..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 479999999999999999999999999999986 3 455666688665 789999999999999999998888774 56
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCC
Q 006212 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA 352 (656)
Q Consensus 305 ~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~ 352 (656)
.++.||||.++||++.........+.+.+++..+...---|.+..+..
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A 128 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGA 128 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhh
Confidence 888899999999999999999999999999876633322266666543
No 51
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.14 E-value=1.3e-10 Score=122.67 Aligned_cols=121 Identities=16% Similarity=0.266 Sum_probs=95.2
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-CHHHHhccCCEEEEccCCCcccccccc--HHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN--DET 305 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~--~~~ 305 (656)
++|||||+|.||+.+|+++...|++|++||++. ..+.+.+.|+..+ ++++++++||+|++|+|....++.++. ...
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 579999999999999999999999999999986 3344556677554 789999999999999998777776653 335
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCC
Q 006212 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEP 350 (656)
Q Consensus 306 l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP 350 (656)
+..+++|.+++|+++......+++.+.+++..+...--.|++.+|
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~ 127 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP 127 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence 677899999999999998878888887776544322223555554
No 52
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.11 E-value=2e-10 Score=121.11 Aligned_cols=108 Identities=19% Similarity=0.257 Sum_probs=88.9
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCee-cCHHHHhccCCEEEEccCCCccccccc-c-HHHH
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIF-N-DETF 306 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li-~-~~~l 306 (656)
+|||||+|.||+.+|+++...|++|.+||++. ..+.+.+.|... .++++++++||+|++|+|..+.++.++ + ...+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 48999999999999999999999999999886 334455666643 478899999999999999877776664 3 2356
Q ss_pred hcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 307 AKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 307 ~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
..+++|+++||+++....+.+++.+.+++..+
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~ 112 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGI 112 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 77899999999999998888889888887533
No 53
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.03 E-value=6.5e-10 Score=117.78 Aligned_cols=110 Identities=16% Similarity=0.263 Sum_probs=90.7
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCee-cCHHHHhccCCEEEEccCCCcccccccc--HHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFN--DET 305 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~--~~~ 305 (656)
++|||||+|.||.++|+++...|++|.+||++. ..+.+.+.|+.. .++.+++++||+|++|+|....++.++. ...
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 479999999999999999999999999999986 334445566644 4788999999999999997766666653 245
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeE
Q 006212 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVA 339 (656)
Q Consensus 306 l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~ 339 (656)
+..+++|.++||++++.....+.+.+.+.+..+.
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~ 115 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS 115 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 6678999999999999999999998888876653
No 54
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=99.02 E-value=1.3e-09 Score=120.01 Aligned_cols=103 Identities=29% Similarity=0.453 Sum_probs=89.3
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeecCHHHHhccCCEEEEccCCCcccccccc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~ 302 (656)
+..+.|++++|+|+|.||..+|++++++|++|+++|+.. ....+...|+..+++++.++.+|+|+.|+. +.++++
T Consensus 197 ~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI~atG----~~~~i~ 272 (413)
T cd00401 197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFVTTTG----NKDIIT 272 (413)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEEECCC----CHHHHH
Confidence 557899999999999999999999999999999998875 456788889987788899999999998764 456788
Q ss_pred HHHHhcCCCCcEEEEcCCCch-hcHHHHH
Q 006212 303 DETFAKMKKGVRIVNVARGGV-IDEEALV 330 (656)
Q Consensus 303 ~~~l~~mK~gailINvaRg~i-vde~aL~ 330 (656)
...+..||+|++++|+|+..+ +|..+|.
T Consensus 273 ~~~l~~mk~GgilvnvG~~~~eId~~~L~ 301 (413)
T cd00401 273 GEHFEQMKDGAIVCNIGHFDVEIDVKGLK 301 (413)
T ss_pred HHHHhcCCCCcEEEEeCCCCCccCHHHHH
Confidence 888999999999999999876 6766664
No 55
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.02 E-value=6.7e-10 Score=118.80 Aligned_cols=95 Identities=25% Similarity=0.424 Sum_probs=79.7
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC--ChhHHHHcCCeecCHHHHhccCCEEEEccCCCcccccccc
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA--PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~--~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~ 302 (656)
..|.||+|||||+|+||+++|++|+.+|++|+++++.. ..+.+.+.|+...++++++++||+|++|+|.+.. ..+++
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVPd~~~-~~V~~ 91 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLPDEVQ-AEVYE 91 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCCHHHH-HHHHH
Confidence 46899999999999999999999999999999887653 4455667788777999999999999999996654 67776
Q ss_pred HHHHhcCCCCcEEEEcCCC
Q 006212 303 DETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 303 ~~~l~~mK~gailINvaRg 321 (656)
++.+..|++|++| -.+.|
T Consensus 92 ~~I~~~Lk~g~iL-~~a~G 109 (330)
T PRK05479 92 EEIEPNLKEGAAL-AFAHG 109 (330)
T ss_pred HHHHhcCCCCCEE-EECCC
Confidence 7788889999988 44555
No 56
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.01 E-value=1.3e-09 Score=115.63 Aligned_cols=115 Identities=19% Similarity=0.311 Sum_probs=93.3
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-CHHHHhcc---CCEEEEccCCCccccccccHHH
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQALAT---ADFISLHMPLNPTTSKIFNDET 305 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~l~ell~~---aDvV~l~~Plt~~T~~li~~~~ 305 (656)
+|||||+|.||+.+|+++...|++|++||++. ..+.+.+.|+... ++++++++ +|+|++|+|..+.++.++ ...
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~-~~i 80 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI-KDL 80 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH-HHH
Confidence 69999999999999999999999999999875 3344556677654 78898876 699999999766777777 456
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEee--ccCC
Q 006212 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALD--VFTE 348 (656)
Q Consensus 306 l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lD--V~~~ 348 (656)
+..+++|.++||+++....+..++.+.+++..+. .+| |++.
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vdapV~G~ 123 (299)
T PRK12490 81 YPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVDCGTSGG 123 (299)
T ss_pred hccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEeCCCCCC
Confidence 6778999999999999999999998888776553 356 4444
No 57
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=98.93 E-value=4.4e-09 Score=111.60 Aligned_cols=108 Identities=19% Similarity=0.276 Sum_probs=89.8
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-CHHHHhcc---CCEEEEccCCCccccccccHHH
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQALAT---ADFISLHMPLNPTTSKIFNDET 305 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~l~ell~~---aDvV~l~~Plt~~T~~li~~~~ 305 (656)
+|||||+|.||+.+|++|...|.+|.+||++. ..+.+.+.|+... +++++++. +|+|++++|..+.+..++ ...
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~l 80 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DEL 80 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HHH
Confidence 79999999999999999999999999999986 3344566787665 78888876 699999999766667766 456
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeE
Q 006212 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVA 339 (656)
Q Consensus 306 l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~ 339 (656)
+..+++|.++||++++.......+.+.+++..+.
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~ 114 (301)
T PRK09599 81 APLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH 114 (301)
T ss_pred HhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE
Confidence 6778999999999999988888888888876663
No 58
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=98.91 E-value=3.7e-09 Score=111.88 Aligned_cols=108 Identities=19% Similarity=0.247 Sum_probs=87.4
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccH--HHHh
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFND--ETFA 307 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~--~~l~ 307 (656)
+|||||+|+||+.+|++|...|++|.+||+....+.+.+.|+... +..+++++||+|++|+|..+..+.++.. ..+.
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~ 81 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTK 81 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhc
Confidence 699999999999999999999999999998754444556677544 7889999999999999977666665522 3466
Q ss_pred cCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 308 KMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 308 ~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
.+++|.++||++....-....+.+.+.+..+
T Consensus 82 ~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~ 112 (292)
T PRK15059 82 ASLKGKTIVDMSSISPIETKRFARQVNELGG 112 (292)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 6899999999999888777778777776533
No 59
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=98.88 E-value=5.2e-09 Score=117.75 Aligned_cols=121 Identities=11% Similarity=0.107 Sum_probs=99.1
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-hHHHH----cCCe----ecCHHHHhcc---CCEEEEccCCCcccc
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA----VGVE----LVSFDQALAT---ADFISLHMPLNPTTS 298 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~a~~----~g~~----~~~l~ell~~---aDvV~l~~Plt~~T~ 298 (656)
+|||||+|.||+.||++|...|++|.+||+.... +...+ .|.. ..+++++++. +|+|++|+|..+.+.
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~ 87 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVD 87 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHH
Confidence 6999999999999999999999999999997632 22222 1542 3478888876 999999999888888
Q ss_pred ccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCC
Q 006212 299 KIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA 352 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~ 352 (656)
.++ ...+..|++|.++||++....-+...+.+.+++..+.....=|++.++.+
T Consensus 88 ~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA 140 (493)
T PLN02350 88 QTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGA 140 (493)
T ss_pred HHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHh
Confidence 887 56788899999999999999989999988898877766666688888643
No 60
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=98.84 E-value=1.2e-08 Score=84.42 Aligned_cols=72 Identities=36% Similarity=0.649 Sum_probs=66.9
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHHhcCCCccEEEEEee
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTLLHV 632 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L~~~~~V~~v~~v~l 632 (656)
+++.++|+||.+++++++|+++|+||..+.+.+...++.+.+++.+|.+.+++++++|+++++|.+++++.|
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~l~~~~~v~~v~~~~~ 73 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEPVPDEVLEELRALPGILSAKVVEL 73 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCCCCHHHHHHHHcCCCccEEEEEeC
Confidence 577899999999999999999999999999987767789999999999888899999999999999999875
No 61
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.83 E-value=1e-08 Score=109.56 Aligned_cols=94 Identities=27% Similarity=0.407 Sum_probs=73.3
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCC-C-ChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHH
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY-A-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDE 304 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~-~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~ 304 (656)
|.||+|||||+|+||+++|+.|+.+|++|+++++. . ..+.+.+.|+...+..+++++||+|++|+|... ....+.++
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~s~~ea~~~ADiVvLaVpp~~-~~~~v~~e 79 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVGTVEEAIPQADLIMNLLPDEV-QHEVYEAE 79 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEECCHHHHHhcCCEEEEeCCcHh-HHHHHHHH
Confidence 57999999999999999999999999998875443 2 345555778877788999999999999999432 23344455
Q ss_pred HHhcCCCCcEEEEcCCCc
Q 006212 305 TFAKMKKGVRIVNVARGG 322 (656)
Q Consensus 305 ~l~~mK~gailINvaRg~ 322 (656)
....|+++. +|.++-|=
T Consensus 80 i~~~l~~g~-iVs~aaG~ 96 (314)
T TIGR00465 80 IQPLLKEGK-TLGFSHGF 96 (314)
T ss_pred HHhhCCCCc-EEEEeCCc
Confidence 667788886 67777664
No 62
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.79 E-value=6.6e-09 Score=99.68 Aligned_cols=93 Identities=33% Similarity=0.531 Sum_probs=69.6
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC--ChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHH
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA--PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDE 304 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~--~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~ 304 (656)
|+||||+|||||..|.+.|.+||..|++|++-.+.. +.+.|++.|++..++.|++++||+|++.+|.. ....++.++
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~PD~-~q~~vy~~~ 80 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLLLPDE-VQPEVYEEE 80 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S-HH-HHHHHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCChH-HHHHHHHHH
Confidence 689999999999999999999999999998765543 56889999999999999999999999999933 234455677
Q ss_pred HHhcCCCCcEEEEcCCC
Q 006212 305 TFAKMKKGVRIVNVARG 321 (656)
Q Consensus 305 ~l~~mK~gailINvaRg 321 (656)
....||+|..|+ .+.|
T Consensus 81 I~p~l~~G~~L~-fahG 96 (165)
T PF07991_consen 81 IAPNLKPGATLV-FAHG 96 (165)
T ss_dssp HHHHS-TT-EEE-ESSS
T ss_pred HHhhCCCCCEEE-eCCc
Confidence 777899998764 4444
No 63
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=98.78 E-value=2.8e-08 Score=105.46 Aligned_cols=118 Identities=13% Similarity=0.200 Sum_probs=87.6
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCee-cCHHHH---hccCCEEEEccCCCccccccccHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVEL-VSFDQA---LATADFISLHMPLNPTTSKIFNDE 304 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~-~~l~el---l~~aDvV~l~~Plt~~T~~li~~~ 304 (656)
++|||||+|.||..+|+++...|++|.+||++. ..+.+.+.|... .+++++ +.++|+|++|+|.. .++.++ ++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~ 78 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EE 78 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HH
Confidence 379999999999999999999999999999986 334445555533 355554 45789999999966 667776 45
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCC
Q 006212 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEE 349 (656)
Q Consensus 305 ~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~E 349 (656)
....+++|.++||++.+...+...+.+.+++..+.....-|++..
T Consensus 79 l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~ 123 (298)
T TIGR00872 79 LAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGV 123 (298)
T ss_pred HHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCH
Confidence 667789999999999887777777777777655532322344433
No 64
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.77 E-value=8.5e-09 Score=113.10 Aligned_cols=103 Identities=18% Similarity=0.264 Sum_probs=82.3
Q ss_pred ccccccc-cc-cccCCCEEEEEecChhHHHHHHHHhcCCCEEEE------ECCCC-ChhHHHHcCCeecCHHHHhccCCE
Q 006212 216 KWLRSKY-VG-VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA------HDPYA-PADKARAVGVELVSFDQALATADF 286 (656)
Q Consensus 216 ~W~~~~~-~g-~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~------~d~~~-~~~~a~~~g~~~~~l~ell~~aDv 286 (656)
-|.+..| .+ ..|+||||+|||+|.+|+.-|..++..|++|++ .|... +.+.|.+.|+.+.++++++++||+
T Consensus 21 ~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADv 100 (487)
T PRK05225 21 FMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADL 100 (487)
T ss_pred ecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCE
Confidence 4887766 23 469999999999999999888888888888873 33322 556677789888899999999999
Q ss_pred EEEccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 006212 287 ISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 287 V~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg 321 (656)
|++.+|.+ + .+.+.++.+..||+|+.|. .+.|
T Consensus 101 VviLlPDt-~-q~~v~~~i~p~LK~Ga~L~-fsHG 132 (487)
T PRK05225 101 VINLTPDK-Q-HSDVVRAVQPLMKQGAALG-YSHG 132 (487)
T ss_pred EEEcCChH-H-HHHHHHHHHhhCCCCCEEE-ecCC
Confidence 99999988 3 7777799999999998874 3443
No 65
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.76 E-value=1.6e-07 Score=99.00 Aligned_cols=174 Identities=19% Similarity=0.249 Sum_probs=104.7
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHH-------------------------cCCee-cCHHHHhc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARA-------------------------VGVEL-VSFDQALA 282 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~-------------------------~g~~~-~~l~ell~ 282 (656)
++|+|||.|.||.++|..+...|.+|++||++.. .+.+.+ .++.. .++++.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 5899999999999999999988999999998752 222211 12222 37888899
Q ss_pred cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc-CCeEEEEeeccCCCCCCCCCccccCC
Q 006212 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFTEEPPAKDSKLVQHE 361 (656)
Q Consensus 283 ~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~-g~i~gA~lDV~~~EP~~~~~~L~~~~ 361 (656)
.||+|+.|+|...+.+.-+-++....++++++|+..+++-. ...+.+.++. .++.| ++. .+|.+.++
T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~--~~~~~~~~~~~~r~vg--~Hf--------~~p~~~~~ 151 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLL--PSQFAEATGRPEKFLA--LHF--------ANEIWKNN 151 (287)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCC--HHHHHhhcCCcccEEE--EcC--------CCCCCcCC
Confidence 99999999995544444333445556789998855444432 3445554443 23433 332 13455678
Q ss_pred cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhhc-cchHHHHHHH
Q 006212 362 NVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSEL-APYVVLAKKL 424 (656)
Q Consensus 362 nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~Vn~p~~~~~~~~~l-~p~~~laerl 424 (656)
.+.++|+-..+ .++.+.+.++++.-....++-.+-.+-.+.+.+ .+++..|-+|
T Consensus 152 lvevv~~~~t~---------~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l 206 (287)
T PRK08293 152 TAEIMGHPGTD---------PEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALAL 206 (287)
T ss_pred eEEEeCCCCCC---------HHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHH
Confidence 88899986554 334444555554433333332223334444443 3555444443
No 66
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=98.75 E-value=2.3e-08 Score=103.89 Aligned_cols=112 Identities=13% Similarity=0.202 Sum_probs=91.4
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-CHHHHhccCCEEEEccCCCcccccccc--
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN-- 302 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~-- 302 (656)
...++|||||+|.||..|+..|...|++|++||++. ..+.+.+.|.+.. ++.|+.+.||+|+.++|.....+.++.
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~ 112 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGK 112 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCC
Confidence 357899999999999999999999999999999987 4456777888765 899999999999999998877777663
Q ss_pred HHHHhcCCCCcEE-EEcCCCchhcHHHHHHhHhcCCe
Q 006212 303 DETFAKMKKGVRI-VNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 303 ~~~l~~mK~gail-INvaRg~ivde~aL~~aL~~g~i 338 (656)
...|...++|... ||.+.-...-...+.++++....
T Consensus 113 ~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~ 149 (327)
T KOG0409|consen 113 SGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGG 149 (327)
T ss_pred CcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCC
Confidence 3456667777666 89988777666777777776533
No 67
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.75 E-value=1.2e-07 Score=100.19 Aligned_cols=106 Identities=25% Similarity=0.250 Sum_probs=76.6
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-hH-----------HHHcC-------------CeecCHHHHhccC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DK-----------ARAVG-------------VELVSFDQALATA 284 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~-----------a~~~g-------------~~~~~l~ell~~a 284 (656)
++|||||+|.||..+|+.+...|++|++||++... +. ..+.| ....+..+.+++|
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a 84 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA 84 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence 68999999999999999999999999999987522 21 11112 1233333568999
Q ss_pred CEEEEccCCCccccccccHHHHhcCCCCcEEE-EcCCCchhcHHHHHHhHhc-CCe
Q 006212 285 DFISLHMPLNPTTSKIFNDETFAKMKKGVRIV-NVARGGVIDEEALVRALDS-GVV 338 (656)
Q Consensus 285 DvV~l~~Plt~~T~~li~~~~l~~mK~gailI-NvaRg~ivde~aL~~aL~~-g~i 338 (656)
|+|+.|+|..++.+..+-.+....++++++|+ |++.-.+- .+.+.+.. .++
T Consensus 85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~---~l~~~~~~~~r~ 137 (295)
T PLN02545 85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISIT---RLASATQRPQQV 137 (295)
T ss_pred CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCCcce
Confidence 99999999888887776666666789999886 77766443 34444443 344
No 68
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.75 E-value=1.3e-07 Score=101.33 Aligned_cols=174 Identities=22% Similarity=0.228 Sum_probs=107.8
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHH-----------HcC---------Cee-cCHHHHhccCCEE
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKAR-----------AVG---------VEL-VSFDQALATADFI 287 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~-----------~~g---------~~~-~~l~ell~~aDvV 287 (656)
++|||||.|.||..+|..+...|++|.+||+... .+.+. +.| +.. .++++.+++||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 6899999999999999999999999999998752 11111 111 123 3788999999999
Q ss_pred EEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc-CCeEEEEeeccCCCCCCCCCccccCCcEEEc
Q 006212 288 SLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFTEEPPAKDSKLVQHENVTVT 366 (656)
Q Consensus 288 ~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~-g~i~gA~lDV~~~EP~~~~~~L~~~~nvilT 366 (656)
+-|+|...+.+..+-++.-+.++++++| .++..++ ...++.+.++. .++ .+++.| .|+ .--||.+ ++-+
T Consensus 88 iEavpE~l~vK~~lf~~l~~~~~~~aIl-aSnTS~l-~~s~la~~~~~p~R~--~g~Hff--nP~-~~~pLVE---Vv~g 157 (321)
T PRK07066 88 QESAPEREALKLELHERISRAAKPDAII-ASSTSGL-LPTDFYARATHPERC--VVGHPF--NPV-YLLPLVE---VLGG 157 (321)
T ss_pred EECCcCCHHHHHHHHHHHHHhCCCCeEE-EECCCcc-CHHHHHHhcCCcccE--EEEecC--Ccc-ccCceEE---EeCC
Confidence 9999999888887777777889999854 4444443 45566656654 455 444544 332 2345664 4545
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhhcc-chHHHHHHH
Q 006212 367 PHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELA-PYVVLAKKL 424 (656)
Q Consensus 367 PH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~Vn~p~~~~~~~~~l~-p~~~laerl 424 (656)
|+. + .++.+.+.+|++.-.-..++-..-.|--+.+.+. +++..|-+|
T Consensus 158 ~~T--~---------~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~l 205 (321)
T PRK07066 158 ERT--A---------PEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHL 205 (321)
T ss_pred CCC--C---------HHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHH
Confidence 543 1 3344445555543332232221233444555543 444444433
No 69
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=98.75 E-value=2e-08 Score=105.86 Aligned_cols=105 Identities=18% Similarity=0.268 Sum_probs=83.5
Q ss_pred EEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-CHHHHhccCCEEEEccCCCcccccccc--HHHHhcC
Q 006212 234 VMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN--DETFAKM 309 (656)
Q Consensus 234 IIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~--~~~l~~m 309 (656)
|||+|.||..+|++|...|++|.+||++. ..+...+.|+... ++.+++++||+|++|+|....++.++. ...+..+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 68999999999999999999999999986 3445556677554 899999999999999997666666652 3456678
Q ss_pred CCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 310 KKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 310 K~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
++|.++||++....-....+.+.+++..+
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~ 109 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGA 109 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 99999999997776666777777765433
No 70
>PLN02858 fructose-bisphosphate aldolase
Probab=98.74 E-value=2.7e-08 Score=124.10 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=93.3
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccc--cH
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIF--ND 303 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li--~~ 303 (656)
..++|||||+|.||..||++|...|++|.+||++. ..+.+.+.|+... ++.+++++||+|++|+|..+.++.++ ..
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~ 82 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE 82 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence 35789999999999999999999999999999986 3345566787654 89999999999999999888888776 34
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCC
Q 006212 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGV 337 (656)
Q Consensus 304 ~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~ 337 (656)
..+..+++|.++||++....-....+.+.+++..
T Consensus 83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g 116 (1378)
T PLN02858 83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERK 116 (1378)
T ss_pred hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcC
Confidence 5677899999999999988888888888887654
No 71
>PLN02858 fructose-bisphosphate aldolase
Probab=98.73 E-value=3.8e-08 Score=122.73 Aligned_cols=107 Identities=17% Similarity=0.176 Sum_probs=90.0
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHcCCee-cCHHHHhccCCEEEEccCCCccccccc--cHH
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIF--NDE 304 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li--~~~ 304 (656)
.++|||||+|.||..||++|...|++|.+||++.. .+...+.|... .++.+++++||+|++|+|..++++.++ ...
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g 403 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG 403 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence 47899999999999999999999999999998763 34445566644 489999999999999999888888776 345
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHHhHhc
Q 006212 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 305 ~l~~mK~gailINvaRg~ivde~aL~~aL~~ 335 (656)
.+..|++|.++||++....-..+.+.+.+.+
T Consensus 404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~ 434 (1378)
T PLN02858 404 AVSALPAGASIVLSSTVSPGFVIQLERRLEN 434 (1378)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHHHHh
Confidence 6788999999999999888777788777776
No 72
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=98.72 E-value=4.7e-08 Score=103.51 Aligned_cols=101 Identities=32% Similarity=0.479 Sum_probs=85.6
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccH
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~ 303 (656)
.-+.||++.|.|||.+|+.+|.++++.|++|++..-.+ ..-+|.-.|+++..+++....+|+++.++- ++++|..
T Consensus 205 ~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gDifiT~TG----nkdVi~~ 280 (420)
T COG0499 205 VLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFVTATG----NKDVIRK 280 (420)
T ss_pred eeecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHHhhhcCCEEEEccC----CcCccCH
Confidence 35899999999999999999999999999999975443 334567789999999999999999999765 6788999
Q ss_pred HHHhcCCCCcEEEEcCCCch-hcHHHH
Q 006212 304 ETFAKMKKGVRIVNVARGGV-IDEEAL 329 (656)
Q Consensus 304 ~~l~~mK~gailINvaRg~i-vde~aL 329 (656)
+.|..||+|+++-|.|.-.+ +|.+.|
T Consensus 281 eh~~~MkDgaIl~N~GHFd~EI~~~~L 307 (420)
T COG0499 281 EHFEKMKDGAILANAGHFDVEIDVAGL 307 (420)
T ss_pred HHHHhccCCeEEecccccceeccHHHH
Confidence 99999999999999986544 345554
No 73
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=98.71 E-value=3.6e-08 Score=110.64 Aligned_cols=120 Identities=10% Similarity=0.175 Sum_probs=95.7
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-hHHHHc----CCe---ecCHHHHhc---cCCEEEEccCCCcccc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAV----GVE---LVSFDQALA---TADFISLHMPLNPTTS 298 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~a~~~----g~~---~~~l~ell~---~aDvV~l~~Plt~~T~ 298 (656)
.+|||||+|.||+.+|++|...|++|.+||++... +...+. |.. ..+++++++ ++|+|++++|....++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 37999999999999999999999999999998632 222221 432 347888886 5899999999888888
Q ss_pred ccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCC
Q 006212 299 KIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEP 350 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP 350 (656)
.++ .+.+..|++|.+|||++.+..-+...+.+.+.+..+.....=|++.++
T Consensus 82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~ 132 (470)
T PTZ00142 82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE 132 (470)
T ss_pred HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence 887 456778999999999999998898888888888777555555777664
No 74
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.69 E-value=2.8e-07 Score=97.20 Aligned_cols=128 Identities=20% Similarity=0.201 Sum_probs=85.2
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHH-------HcC-----------------Cee-cCHHHHhcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKAR-------AVG-----------------VEL-VSFDQALAT 283 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~-------~~g-----------------~~~-~~l~ell~~ 283 (656)
++|+|||.|.||..+|..+...|++|++||++.. .+.+. ..+ +.. .++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 5799999999999999999999999999998752 22211 011 222 368889999
Q ss_pred CCEEEEccCCCccccccccHHHHhcCCCCcEE-EEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCc
Q 006212 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRI-VNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHEN 362 (656)
Q Consensus 284 aDvV~l~~Plt~~T~~li~~~~l~~mK~gail-INvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~n 362 (656)
||+|+.|+|...+.+..+-.+..+.++++++| +|++.-.+ ..+.+.++. .-.-.+++.+ .|.. ..+ -
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~--~Pv~-~~~-----L 149 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF--NPVH-KMK-----L 149 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC--CCcc-cCc-----e
Confidence 99999999976655544434455668999877 78877554 344444433 1222556666 3542 233 4
Q ss_pred EEEcCCC
Q 006212 363 VTVTPHL 369 (656)
Q Consensus 363 vilTPH~ 369 (656)
+.+.|+-
T Consensus 150 ve~v~g~ 156 (288)
T PRK09260 150 VELIRGL 156 (288)
T ss_pred EEEeCCC
Confidence 5577764
No 75
>PF03315 SDH_beta: Serine dehydratase beta chain; InterPro: IPR005131 L-serine dehydratase is found as a heterodimer of alpha and beta chain or as a fusion of the two chains in a single protein. This enzyme catalyses the deamination of serine to form pyruvate and is part of the gluconeogenesis pathway.; GO: 0003941 L-serine ammonia-lyase activity, 0051539 4 iron, 4 sulfur cluster binding, 0006094 gluconeogenesis; PDB: 2IQQ_A 2IAF_A.
Probab=98.67 E-value=1.4e-08 Score=97.90 Aligned_cols=116 Identities=8% Similarity=-0.011 Sum_probs=75.6
Q ss_pred HHHHhHHHHHhhcCC---CCceEEEEEEeecCCCCCcccccccHHHHHHhhhhhhhcccccc------------chHhHh
Q 006212 421 AKKLGRLAVQLVSGG---SGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLV------------NADFTA 485 (656)
Q Consensus 421 aerlG~l~~qL~~g~---~~~k~i~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~v------------NA~~iA 485 (656)
.-|+|+.++|++.+. ..+.+|++.++||++ .++++|++|.|++.|||+. ..+++++. |.+.++
T Consensus 20 pmra~~~f~~~l~~~~~l~~~~~v~v~l~GSla-~Tg~GHgTD~Av~~GLlG~-~p~~~~~~~~~~~~~~~~~~~~L~l~ 97 (157)
T PF03315_consen 20 PMRAARRFRQLLGEQGLLPQVARVRVDLYGSLA-ATGKGHGTDRAVLAGLLGE-DPEDVDPDSIPERLERIREENRLRLA 97 (157)
T ss_dssp HHHHHHHHHHHHHHTT-TTT--EEEEEEEHHHH-HT-TTSSHHHHHHHHCTT---TTTS-GGGHHHHHHHHHHHTEEEET
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEEeechhH-HhCCCcccchhheeccccc-CCcccchhhhHHHHHHhhcCCEEEEC
Confidence 457788888887652 158899999999999 9999999999999999955 44458888 444444
Q ss_pred hccCceEE------EEEeecCCCCCCCCceEEEEEEecccccceecCCCcEEEEEEEEEC-CeeEEEEEcc
Q 006212 486 KQKGLRIS------EERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKF-GIPHLTRVGS 549 (656)
Q Consensus 486 ke~GI~v~------~~~~~~~~~~~~~~ntv~i~l~~~~~~~~~~~~~~~~~~v~Gt~~g-G~~rI~~IdG 549 (656)
.++.|.+. |..... +..|||++++++.+ ..++..++..+.|+| |.+++.++||
T Consensus 98 ~~~~i~f~~~~dI~f~~~~~---~~~HPNtm~~~a~d--------~~g~~~~~~t~ySIGGGfI~~~~~~~ 157 (157)
T PF03315_consen 98 GEREIPFDPERDIIFHPEEF---LPFHPNTMRFEAYD--------ADGGELLEETYYSIGGGFIVIEEENG 157 (157)
T ss_dssp TTEEEE--HHHHEEEETT------SS-SSEEEEEEE---------TTS-EEEEEEEEEETTTEEEETTTT-
T ss_pred CCcccccccCCCeEEEeccC---CCCCCCEEEEEEEe--------CCCCEEEEEEEEEeCCeEEEEeeecC
Confidence 44444333 222221 13799999999973 134457899999998 7887766554
No 76
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=98.63 E-value=9.5e-08 Score=107.29 Aligned_cols=118 Identities=18% Similarity=0.212 Sum_probs=90.6
Q ss_pred EEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHc---C--Cee-cCHHHHh---ccCCEEEEccCCCccccccc
Q 006212 232 LAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAV---G--VEL-VSFDQAL---ATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 232 vGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~---g--~~~-~~l~ell---~~aDvV~l~~Plt~~T~~li 301 (656)
|||||+|.||+.+|++|...|++|.+||++.. .+.+.+. | +.. .++++++ +++|+|++++|..+.+..++
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~Vi 81 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVI 81 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHHH
Confidence 89999999999999999999999999999763 3333333 2 322 3677766 46999999999767777777
Q ss_pred cHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCC
Q 006212 302 NDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEP 350 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP 350 (656)
.+.+..+++|.+|||++....-+...+.+.+++..+.....-|++.++
T Consensus 82 -~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~ 129 (467)
T TIGR00873 82 -NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEE 129 (467)
T ss_pred -HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHH
Confidence 456677899999999999888787777777877666545445666654
No 77
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.56 E-value=4.1e-07 Score=91.24 Aligned_cols=108 Identities=27% Similarity=0.348 Sum_probs=79.7
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHH-HHcCCeecCHHHHhc-cCCEEEEccCCCcccccc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKA-RAVGVELVSFDQALA-TADFISLHMPLNPTTSKI 300 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a-~~~g~~~~~l~ell~-~aDvV~l~~Plt~~T~~l 300 (656)
+.++.||+++|+|+|+||+.+|++|..+|++|+++|++.. .+.. ...|...++.++++. +||+++.|.. .++
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~~~l~~~~~Dv~vp~A~-----~~~ 97 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAPEEIYSVDADVFAPCAL-----GGV 97 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcchhhccccCCEEEeccc-----ccc
Confidence 5678999999999999999999999999999999998753 2222 233666667777775 7999987765 357
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 301 FNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 301 i~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
++++.+..|+. -+|+.-+-+.+-|.+ -.+.|++..|
T Consensus 98 I~~~~~~~l~~-~~v~~~AN~~~~~~~-~~~~L~~~Gi 133 (200)
T cd01075 98 INDDTIPQLKA-KAIAGAANNQLADPR-HGQMLHERGI 133 (200)
T ss_pred cCHHHHHHcCC-CEEEECCcCccCCHh-HHHHHHHCCC
Confidence 88888888874 477777777665422 2334555444
No 78
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.55 E-value=1.2e-07 Score=82.93 Aligned_cols=88 Identities=25% Similarity=0.423 Sum_probs=64.2
Q ss_pred EEEEEecChhHHHHHHHHhcCC---CEEE-EECCCCC--hhHHHHcCCeec--CHHHHhccCCEEEEccCCCcccccccc
Q 006212 231 TLAVMGFGKVGSEVARRAKGLG---MNVI-AHDPYAP--ADKARAVGVELV--SFDQALATADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G---~~Vi-~~d~~~~--~~~a~~~g~~~~--~l~ell~~aDvV~l~~Plt~~T~~li~ 302 (656)
||||||+|+||..+++.+...| .+|+ +++++.. .+.+.+.++... +..+++++||+|++|+|.. ....+.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~-~~~~v~- 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQ-QLPEVL- 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GG-GHHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHH-HHHHHH-
Confidence 6999999999999999999999 8999 5587752 234466676543 6999999999999999922 233333
Q ss_pred HHHHhcCCCCcEEEEcCCC
Q 006212 303 DETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 303 ~~~l~~mK~gailINvaRg 321 (656)
.+. ....++.++|++.-|
T Consensus 79 ~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 79 SEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HHH-HHHHTTSEEEEESTT
T ss_pred HHH-hhccCCCEEEEeCCC
Confidence 222 556788999998643
No 79
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.55 E-value=9.3e-07 Score=91.87 Aligned_cols=101 Identities=22% Similarity=0.294 Sum_probs=75.1
Q ss_pred CEEEEEecChhHHHHHHHHhcCCC----EEEEE-CCCC-ChhHHHHcCCeec-CHHHHhccCCEEEEccCCCcccccccc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGM----NVIAH-DPYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~----~Vi~~-d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~ 302 (656)
.+|||||+|+||+++|+.|...|+ +|++| |++. ..+.+.+.|+... +..+++++||+|++|+| .+....++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl~ 79 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVLT 79 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHHH
Confidence 379999999999999999998887 89999 8765 3344556787654 78888999999999997 445555553
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHhHh
Q 006212 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALD 334 (656)
Q Consensus 303 ~~~l~~mK~gailINvaRg~ivde~aL~~aL~ 334 (656)
+....++++.++|++..| +..+.+.+.+.
T Consensus 80 -~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~ 108 (266)
T PLN02688 80 -ELRPLLSKDKLLVSVAAG--ITLADLQEWAG 108 (266)
T ss_pred -HHHhhcCCCCEEEEecCC--CcHHHHHHHcC
Confidence 344557889988888655 35555554443
No 80
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.54 E-value=2.9e-07 Score=102.14 Aligned_cols=106 Identities=21% Similarity=0.201 Sum_probs=72.7
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCee---cCHHHH---------------hccCCEEEEcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL---VSFDQA---------------LATADFISLHM 291 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~---~~l~el---------------l~~aDvV~l~~ 291 (656)
++|+|||+|.||.++|.+|...|++|++||++...-.....|... ..++++ +++||+|++|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v 83 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV 83 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence 689999999999999999999999999999876432233333211 134444 34799999999
Q ss_pred CCC------ccccccc--cHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc
Q 006212 292 PLN------PTTSKIF--NDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 292 Plt------~~T~~li--~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~ 335 (656)
|.. ++...+. -......+++|+++|+.+...+-..+.+...+.+
T Consensus 84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~ 135 (415)
T PRK11064 84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAE 135 (415)
T ss_pred CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 943 1222222 1345566899999999998665555555544443
No 81
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.53 E-value=3e-08 Score=116.34 Aligned_cols=184 Identities=15% Similarity=0.103 Sum_probs=115.3
Q ss_pred EEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc--C-CeEE---EEeeccCCCCCCCCCccccC
Q 006212 287 ISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS--G-VVAQ---AALDVFTEEPPAKDSKLVQH 360 (656)
Q Consensus 287 V~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~--g-~i~g---A~lDV~~~EP~~~~~~L~~~ 360 (656)
|++|+|. ..+..++. +....++++++|+|+++-+---.++..+.|.. + +|+| ||.++.+.+ .++..||++
T Consensus 1 vila~Pv-~~~~~~~~-~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~--~a~~~Lf~~ 76 (673)
T PRK11861 1 VLLAAPV-AQTGPLLA-RIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVD--AALADLYVG 76 (673)
T ss_pred CEEEcCH-HHHHHHHH-HHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhh--hhChhHhCC
Confidence 5799993 33555553 34456899999999997554333343344432 2 4555 888888887 678899999
Q ss_pred CcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCC-----------CCChhhhhhccchHHHHHHHhHHHH
Q 006212 361 ENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAP-----------MVPSEVLSELAPYVVLAKKLGRLAV 429 (656)
Q Consensus 361 ~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~Vn~p-----------~~~~~~~~~l~p~~~laerlG~l~~ 429 (656)
.+||+||.-... .++. +.+.++++.-..+...-.| |+||-+...+...+.. ..-..++.
T Consensus 77 ~~~il~p~~~~~-~~~~--------~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~a~~l~~~~~~-~~~~~~~~ 146 (673)
T PRK11861 77 RNVVLCALPENA-PDAL--------ARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVLSFALVEQILG-ESDAELKF 146 (673)
T ss_pred CeEEEecCCCCC-HHHH--------HHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHHHHHHHHHHhh-ccChhHHH
Confidence 999999965322 3322 2233333332332222111 4444444333322211 11133445
Q ss_pred HhhcCCCCceEEEEEEeecCCCCCcccccccHHHHHHhhhhhhhccccccchHhHhhc
Q 006212 430 QLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQ 487 (656)
Q Consensus 430 qL~~g~~~~k~i~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~iAke 487 (656)
+|++| +||++|+++.+++. +|.++...|+..+...|+.+..+...+.++..--++
T Consensus 147 ~~a~~--gfrd~tRia~~~p~-lw~di~~~N~~~i~~~l~~~~~~l~~~~~~l~~~d~ 201 (673)
T PRK11861 147 SYAAG--GFRDFTRIAASSPE-MWRDVCLANRAALLDELDAYTAVLARLRAAIDAGDG 201 (673)
T ss_pred Hhccc--chhcccccccCCHH-HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 78888 99999999999998 999999999998877888777765555555543333
No 82
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.52 E-value=1.6e-06 Score=91.69 Aligned_cols=129 Identities=19% Similarity=0.276 Sum_probs=83.9
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHH-----------cC-------------Ceec-CHHHHhcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARA-----------VG-------------VELV-SFDQALAT 283 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~-----------~g-------------~~~~-~l~ell~~ 283 (656)
++|+|||.|.||..+|..+...|++|.+||++.. .+.+.+ .| +... +++ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 6899999999999999999999999999998752 222111 12 2222 554 5789
Q ss_pred CCEEEEccCCCccccccccHHHHhcCCCCcEEE-EcCCCchhcHHHHHHhHhc-CCeEEEEeeccCCCCCCCCCccccCC
Q 006212 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIV-NVARGGVIDEEALVRALDS-GVVAQAALDVFTEEPPAKDSKLVQHE 361 (656)
Q Consensus 284 aDvV~l~~Plt~~T~~li~~~~l~~mK~gailI-NvaRg~ivde~aL~~aL~~-g~i~gA~lDV~~~EP~~~~~~L~~~~ 361 (656)
||+|+.|+|...+.+..+-.+....++++++|+ |++.-.+ .++.+.+.. .++ .+++.+. |.+ -.++.
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---s~la~~~~~~~r~--~g~h~~~--p~~-~~~~v--- 152 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI---TRLASATDRPERF--IGIHFMN--PVP-VMKLV--- 152 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCCcccE--EEeeccC--Ccc-cCceE---
Confidence 999999999766555444345556689999887 6665443 356555532 344 4455554 332 22443
Q ss_pred cEEEcCCCCCC
Q 006212 362 NVTVTPHLGAS 372 (656)
Q Consensus 362 nvilTPH~g~~ 372 (656)
-+.|+.+++
T Consensus 153 --ei~~g~~t~ 161 (292)
T PRK07530 153 --ELIRGIATD 161 (292)
T ss_pred --EEeCCCCCC
Confidence 356665443
No 83
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=98.52 E-value=1.9e-07 Score=76.57 Aligned_cols=68 Identities=29% Similarity=0.544 Sum_probs=60.9
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHHhcCCCccEEEEE
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTLL 630 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L~~~~~V~~v~~v 630 (656)
+++.+.|+||++++++++|+++++||.+|.... .++.+++.++++....++++++|+++++|.+++++
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~--~~~~a~~~~~~~~~~l~~li~~l~~~~~V~~v~~~ 69 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQT--RGEIGYVVIDIDSEVSEELLEALRAIPGTIRVRLL 69 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccC--CCCEEEEEEEcCCCCCHHHHHHHHcCCCeEEEEEC
Confidence 567899999999999999999999999997643 34889999999999888999999999999999874
No 84
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.50 E-value=2.4e-07 Score=98.69 Aligned_cols=83 Identities=24% Similarity=0.267 Sum_probs=67.3
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHh
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFA 307 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~ 307 (656)
.+++|+|||+|.||..+|++|...|++|.+||++.. .++++++++||+|++++|. +..+.+++.-...
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-----------~~~~~~~~~advvi~~vp~-~~~~~v~~~l~~~ 70 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-----------LSLAAVLADADVIVSAVSM-KGVRPVAEQVQAL 70 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-----------CCHHHHHhcCCEEEEECCh-HHHHHHHHHHHHh
Confidence 357899999999999999999999999999998742 3578889999999999996 4566666332122
Q ss_pred cCCCCcEEEEcCCCc
Q 006212 308 KMKKGVRIVNVARGG 322 (656)
Q Consensus 308 ~mK~gailINvaRg~ 322 (656)
.+++++++|++++|-
T Consensus 71 ~~~~~~ivi~~s~gi 85 (308)
T PRK14619 71 NLPPETIIVTATKGL 85 (308)
T ss_pred cCCCCcEEEEeCCcc
Confidence 478899999998743
No 85
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.46 E-value=2.3e-06 Score=90.38 Aligned_cols=130 Identities=19% Similarity=0.246 Sum_probs=85.6
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhH-----------HHHcCC-------------ee-cCHHHHhcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADK-----------ARAVGV-------------EL-VSFDQALAT 283 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~-----------a~~~g~-------------~~-~~l~ell~~ 283 (656)
++|||||.|.||..+|..+...|++|+.||+... .+. +.+.|. .. .++ +.+++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 4899999999999999999999999999998752 222 222232 12 256 45899
Q ss_pred CCEEEEccCCCccccccccHHHHhcC-CCCcEEEEcCCCchhcHHHHHHhHh-cCCeEEEEeeccCCCCCCCCCccccCC
Q 006212 284 ADFISLHMPLNPTTSKIFNDETFAKM-KKGVRIVNVARGGVIDEEALVRALD-SGVVAQAALDVFTEEPPAKDSKLVQHE 361 (656)
Q Consensus 284 aDvV~l~~Plt~~T~~li~~~~l~~m-K~gailINvaRg~ivde~aL~~aL~-~g~i~gA~lDV~~~EP~~~~~~L~~~~ 361 (656)
||+|+-|+|.+.+.+..+-...-+.+ +++++|.+.+++-.+.. +..+++ ..++ .+++.|.+-| -.+|.
T Consensus 85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~--la~~~~~~~r~--~g~hf~~P~~---~~~lv--- 154 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMK--LAAATKRPGRV--LGLHFFNPVP---VLPLV--- 154 (286)
T ss_pred CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH--HHhhcCCCccE--EEEecCCCcc---cCceE---
Confidence 99999999988887776544333434 88999988876654433 333333 2344 4556555322 23444
Q ss_pred cEEEcCCCCCC
Q 006212 362 NVTVTPHLGAS 372 (656)
Q Consensus 362 nvilTPH~g~~ 372 (656)
=++|+.+++
T Consensus 155 --Elv~~~~T~ 163 (286)
T PRK07819 155 --ELVPTLVTS 163 (286)
T ss_pred --EEeCCCCCC
Confidence 456655444
No 86
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.46 E-value=4.6e-07 Score=95.79 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=67.9
Q ss_pred cccccCCCEEEEEecC-hhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG-~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||+|+|||.| .||+.+|.+|...|+.|.+|++... ++.+++++||+|+++++..+ ++
T Consensus 153 ~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~------------~l~e~~~~ADIVIsavg~~~----~v 216 (301)
T PRK14194 153 TCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST------------DAKALCRQADIVVAAVGRPR----LI 216 (301)
T ss_pred hCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC------------CHHHHHhcCCEEEEecCChh----cc
Confidence 4789999999999996 9999999999999999999986532 68899999999999999543 45
Q ss_pred cHHHHhcCCCCcEEEEcCCC
Q 006212 302 NDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg 321 (656)
.... +|+|+++||+|-.
T Consensus 217 ~~~~---ik~GaiVIDvgin 233 (301)
T PRK14194 217 DADW---LKPGAVVIDVGIN 233 (301)
T ss_pred cHhh---ccCCcEEEEeccc
Confidence 4443 7999999999843
No 87
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=98.45 E-value=7e-07 Score=92.64 Aligned_cols=94 Identities=30% Similarity=0.477 Sum_probs=81.2
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCCEEEEE--CCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCcccccccc
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH--DPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~--d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~ 302 (656)
.-+.||.+.|.|||.+|+..|+.||+||.+|++. ||- ....|...|+++++++|+++++|+++.++ ..+.+|.
T Consensus 210 vM~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI-~ALQAaMeG~~V~tm~ea~~e~difVTtT----Gc~dii~ 284 (434)
T KOG1370|consen 210 VMIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPI-CALQAAMEGYEVTTLEEAIREVDIFVTTT----GCKDIIT 284 (434)
T ss_pred heecccEEEEeccCccchhHHHHHhhcCcEEEEeccCch-HHHHHHhhccEeeeHHHhhhcCCEEEEcc----CCcchhh
Confidence 3478999999999999999999999999999996 554 33456778999999999999999999854 4678899
Q ss_pred HHHHhcCCCCcEEEEcCCCch
Q 006212 303 DETFAKMKKGVRIVNVARGGV 323 (656)
Q Consensus 303 ~~~l~~mK~gailINvaRg~i 323 (656)
.+.|.+||.++++-|++.-.+
T Consensus 285 ~~H~~~mk~d~IvCN~Ghfd~ 305 (434)
T KOG1370|consen 285 GEHFDQMKNDAIVCNIGHFDT 305 (434)
T ss_pred HHHHHhCcCCcEEeccccccc
Confidence 999999999999999986543
No 88
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.45 E-value=1e-06 Score=98.06 Aligned_cols=135 Identities=16% Similarity=0.155 Sum_probs=86.7
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCC-----------------eecCHHHHhccCCEEEEccC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV-----------------ELVSFDQALATADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~-----------------~~~~l~ell~~aDvV~l~~P 292 (656)
.+|||||+|.||..+|..+.. |++|++||.+...-.....|. ...+..+.+++||++++|+|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~Vp 85 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITVP 85 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEcC
Confidence 689999999999999999877 699999998764322222333 22333457899999999999
Q ss_pred CCc------ccccccc--HHHHhcCCCCcEEEEcCCCchhcHHHHH-HhHhc--CCeEEE-EeeccCCCCCCC---CCcc
Q 006212 293 LNP------TTSKIFN--DETFAKMKKGVRIVNVARGGVIDEEALV-RALDS--GVVAQA-ALDVFTEEPPAK---DSKL 357 (656)
Q Consensus 293 lt~------~T~~li~--~~~l~~mK~gailINvaRg~ivde~aL~-~aL~~--g~i~gA-~lDV~~~EP~~~---~~~L 357 (656)
... +...++. +.....+++|.++|+.+.-.+-..+.++ ..+++ |.-.+- -.=+|-+||... ...+
T Consensus 86 tp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~~ 165 (425)
T PRK15182 86 TPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHRL 165 (425)
T ss_pred CCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccccc
Confidence 442 2234432 3455678999999999987776655443 33333 321111 111355677643 2356
Q ss_pred ccCCcEEE
Q 006212 358 VQHENVTV 365 (656)
Q Consensus 358 ~~~~nvil 365 (656)
...+.++.
T Consensus 166 ~~~~riv~ 173 (425)
T PRK15182 166 TNIKKITS 173 (425)
T ss_pred cCCCeEEE
Confidence 66677743
No 89
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.43 E-value=1.3e-05 Score=90.60 Aligned_cols=177 Identities=20% Similarity=0.264 Sum_probs=112.7
Q ss_pred CCeEEE-EcCCCCCCHHHHHhcCCcceeEEecccccCccchhhHHhcCceeecCCCCC--h--------hhHHHHHHHHH
Q 006212 130 QCDALI-VRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIAN--T--------VAAAEHGIALL 198 (656)
Q Consensus 130 ~~d~li-v~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~~aa~~~GI~V~n~p~~n--~--------~~vAE~~lal~ 198 (656)
++|+|+ ++ +.+.+-++.+.++--+|+...-.-|.=-++++.++||.+..--... + .+.++.+
T Consensus 64 ~adiIlkV~---~P~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iA---- 136 (511)
T TIGR00561 64 QSDIILKVN---APSDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIA---- 136 (511)
T ss_pred cCCEEEEeC---CCCHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHH----
Confidence 578776 32 2345556666666667766555445444788899999887543211 1 1122222
Q ss_pred HHHHhchhHHHHHHHcccccccc--ccccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec
Q 006212 199 ASMARNVSQADASIKAGKWLRSK--YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV 275 (656)
Q Consensus 199 L~~~R~i~~~~~~~~~g~W~~~~--~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~ 275 (656)
-.|-+..+... -|++.... ..| .+.+.++.|+|.|.+|...++.++.+|.+|+++|.+. ..+.++++|...+
T Consensus 137 --Gy~Avi~Aa~~--lgr~~~g~~taag-~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v 211 (511)
T TIGR00561 137 --GYRAIIEAAHE--FGRFFTGQITAAG-KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFL 211 (511)
T ss_pred --HHHHHHHHHHH--hhhhcCCceecCC-CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEE
Confidence 11111111111 11111100 012 3457899999999999999999999999999999876 4556677776542
Q ss_pred --C--------------------------HHHHhccCCEEEEcc--CCCccccccccHHHHhcCCCCcEEEEcC
Q 006212 276 --S--------------------------FDQALATADFISLHM--PLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 276 --~--------------------------l~ell~~aDvV~l~~--Plt~~T~~li~~~~l~~mK~gailINva 319 (656)
+ +.+.++++|+|+.++ |..+ .-.++.++.++.||+|++|||++
T Consensus 212 ~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 212 ELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred eccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEee
Confidence 1 345578899998887 3221 23578899999999999999997
No 90
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.42 E-value=3.1e-06 Score=90.21 Aligned_cols=103 Identities=19% Similarity=0.226 Sum_probs=68.3
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhH-----------HHHcCC-------------ee-cCHHHHhcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADK-----------ARAVGV-------------EL-VSFDQALAT 283 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~-----------a~~~g~-------------~~-~~l~ell~~ 283 (656)
++|+|||.|.||.++|..+...|++|++||+... .+. ..+.|. .. .++++++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 4799999999999999999999999999998752 222 113342 23 378889999
Q ss_pred CCEEEEccCCCccccccccHHHHhc-CCCCcEEEEcCCCchhcHHHHHHhHhc
Q 006212 284 ADFISLHMPLNPTTSKIFNDETFAK-MKKGVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 284 aDvV~l~~Plt~~T~~li~~~~l~~-mK~gailINvaRg~ivde~aL~~aL~~ 335 (656)
||+|+.|+|...+.+..+-.+ +.. .++.+++.....+ .....+.+.+..
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~-l~~~~~~~~ii~ssts~--~~~~~la~~~~~ 132 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAE-LDALAPPHAILASSTSA--LLASAFTEHLAG 132 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHH-HHHhCCCcceEEEeCCC--CCHHHHHHhcCC
Confidence 999999999664433332222 333 4555555433332 235556666544
No 91
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.40 E-value=6.4e-07 Score=94.02 Aligned_cols=101 Identities=18% Similarity=0.314 Sum_probs=75.4
Q ss_pred CEEEEEecChhHHHHHHHHhcCCC----EEEEECCCC-ChhHHH-HcCCeec-CHHHHhccCCEEEEccCCCcccccccc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGM----NVIAHDPYA-PADKAR-AVGVELV-SFDQALATADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~----~Vi~~d~~~-~~~~a~-~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~ 302 (656)
++|||||+|+||+++++.+...|+ +|+++|++. ..+.+. +.|+... +..+++++||+|++|+| ......++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~vl- 80 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSVI- 80 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHHH-
Confidence 589999999999999999987664 799999875 233333 3677554 78889999999999999 35555555
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHhHh
Q 006212 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALD 334 (656)
Q Consensus 303 ~~~l~~mK~gailINvaRg~ivde~aL~~aL~ 334 (656)
.+....++++.++|++.-| ++.+.|.+.+.
T Consensus 81 ~~l~~~~~~~~lvISi~AG--i~i~~l~~~l~ 110 (272)
T PRK12491 81 NQIKDQIKNDVIVVTIAAG--KSIKSTENEFD 110 (272)
T ss_pred HHHHHhhcCCcEEEEeCCC--CcHHHHHHhcC
Confidence 3333446888999999876 35666666554
No 92
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.40 E-value=2.2e-06 Score=81.38 Aligned_cols=107 Identities=21% Similarity=0.292 Sum_probs=76.4
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCC-CEEEEECCCCC-hh-HHHHcCC-----eecCHHHHhccCCEEEEccCCCcc
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYAP-AD-KARAVGV-----ELVSFDQALATADFISLHMPLNPT 296 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G-~~Vi~~d~~~~-~~-~a~~~g~-----~~~~l~ell~~aDvV~l~~Plt~~ 296 (656)
.++.+++++|+|.|.||+.+++.+...| .+|.++|++.. .+ .+...+. ...+++++++++|+|++|+|....
T Consensus 15 ~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~ 94 (155)
T cd01065 15 IELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMK 94 (155)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCC
Confidence 3467899999999999999999999885 78999998752 22 2333342 344788889999999999996653
Q ss_pred -ccc-cccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcC
Q 006212 297 -TSK-IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (656)
Q Consensus 297 -T~~-li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g 336 (656)
... .+.. ..++++.+++|++..+... .+.+.+++.
T Consensus 95 ~~~~~~~~~---~~~~~~~~v~D~~~~~~~~--~l~~~~~~~ 131 (155)
T cd01065 95 PGDELPLPP---SLLKPGGVVYDVVYNPLET--PLLKEARAL 131 (155)
T ss_pred CCCCCCCCH---HHcCCCCEEEEcCcCCCCC--HHHHHHHHC
Confidence 122 2332 2368999999998765432 555555553
No 93
>PRK15040 L-serine dehydratase TdcG; Provisional
Probab=98.39 E-value=1.4e-06 Score=96.16 Aligned_cols=146 Identities=10% Similarity=0.033 Sum_probs=99.2
Q ss_pred HHHHhHH-HHHhhcCC--CCceEEEEEEeecCCCCCcccccccHHHHHHhhhhhhhccccccch---HhHhhcc------
Q 006212 421 AKKLGRL-AVQLVSGG--SGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNA---DFTAKQK------ 488 (656)
Q Consensus 421 aerlG~l-~~qL~~g~--~~~k~i~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA---~~iAke~------ 488 (656)
+.|+|+. +++|.... +.+++++++++||++ .++++|++|+|++.||+ ++..+++++.++ ...++++
T Consensus 22 Pmraa~~F~~~L~~~~~l~~~~~v~i~LyGSLA-~TGkGHgTD~Avl~GLl-G~~Pd~~~~~~~~~~~~~~~~~~~l~l~ 99 (454)
T PRK15040 22 PMNAGKSFIDRLESSGLLTATSHIVVDLYGSLS-LTGKGHATDVAIIMGLA-GNSPQDVVIDEIPAFIELVTRSGRLPVA 99 (454)
T ss_pred HHHHHHHHHHHHhhccccCCccEEEEEEEchhh-hcCCCccccHHHHHhhc-cCCcccCChhhhHHHHHHHHHcCccccC
Confidence 3466655 56665410 168999999999999 99999999999999999 556666999997 6666666
Q ss_pred -Cc---------eEEEEEeecCCCCCCCCceEEEEEEecccccceecCCCcEEEEEEEEEC-CeeEEEEEcceeEEeecC
Q 006212 489 -GL---------RISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKF-GIPHLTRVGSFGVDASLE 557 (656)
Q Consensus 489 -GI---------~v~~~~~~~~~~~~~~~ntv~i~l~~~~~~~~~~~~~~~~~~v~Gt~~g-G~~rI~~IdGf~V~~~g~ 557 (656)
|+ ++.|.....+ .|||++++++.+ .++...+..+.|+| |.+++-+ ++.-+. ..
T Consensus 100 ~G~~~i~f~~~~di~f~~~~lp----~HPN~m~~~a~~---------~~~~~~e~~~ySIGGGfI~~~~--~~~~~~-~~ 163 (454)
T PRK15040 100 SGAHIVDFPVAKNIIFHPEMLP----RHENGMRITAWK---------GQEELLSKTYYSVGGGFIVEEE--HFGLSH-DV 163 (454)
T ss_pred CCCccccCCCCCceEECCCCCC----CCCCeeEEEEEc---------CCCcEEEEEEEEcCCceeeecc--cccccc-CC
Confidence 76 6777644332 699999999984 23345689999998 6665431 111110 00
Q ss_pred ccEEEEEecCCC---CchhhHHhhhhcCCccccceEe
Q 006212 558 GNLILCRQVDQP---GMIGKVGNILGEHNVNVNFMSV 591 (656)
Q Consensus 558 ~~~Llv~~~D~P---GvIa~V~~iL~~~~INI~~m~v 591 (656)
..+.| -....+...-.+++++|..+-+
T Consensus 164 -------~~~~py~f~s~~ell~~c~~~~~~i~e~v~ 193 (454)
T PRK15040 164 -------ETSVPYDFHSAGELLKMCDYNGLSISGLMM 193 (454)
T ss_pred -------CCCCCcCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 11112 2345566677788888887755
No 94
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.39 E-value=4.5e-06 Score=94.94 Aligned_cols=115 Identities=23% Similarity=0.276 Sum_probs=82.7
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhH-----------HHHcC-------------Cee-cCHHHHhcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADK-----------ARAVG-------------VEL-VSFDQALAT 283 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~-----------a~~~g-------------~~~-~~l~ell~~ 283 (656)
++|||||.|.||..||..+...|++|.+||++.. .+. ..+.| +.. .++++ +++
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 6799999999999999999989999999998752 222 12334 233 36765 569
Q ss_pred CCEEEEccCCCccccccccHHHHhcCCCCcEE-EEcCCCchhcHHHHHHhHhc-CCeEEEEeeccCCCC
Q 006212 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRI-VNVARGGVIDEEALVRALDS-GVVAQAALDVFTEEP 350 (656)
Q Consensus 284 aDvV~l~~Plt~~T~~li~~~~l~~mK~gail-INvaRg~ivde~aL~~aL~~-g~i~gA~lDV~~~EP 350 (656)
||+|+-|+|...+.+..+-.+.-..++++++| +|++.-.+- .+..++.. .++ .|++.|.+-|
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~--~G~hff~Pa~ 150 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT---AIAAALKHPERV--AGLHFFNPVP 150 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccE--EEEeecCCcc
Confidence 99999999988887776655544457899999 599877663 45555443 344 5567666443
No 95
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.39 E-value=4.6e-06 Score=87.66 Aligned_cols=102 Identities=20% Similarity=0.217 Sum_probs=70.3
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-h-----------HHHHcC-------------Ceec-CHHHHhcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-D-----------KARAVG-------------VELV-SFDQALAT 283 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~-----------~a~~~g-------------~~~~-~l~ell~~ 283 (656)
++|+|||.|.||..+|..+...|++|++||++... + ...+.| +... +++ .+++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 57999999999999999999999999999987522 1 122233 2222 454 4799
Q ss_pred CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHh
Q 006212 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALD 334 (656)
Q Consensus 284 aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~ 334 (656)
||+|++|+|...+.+.-+-.+....++++++|+....| +....+.+.+.
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~ 131 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATK 131 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhC
Confidence 99999999966665543434455568999988333333 34446666664
No 96
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=98.38 E-value=1.3e-06 Score=70.87 Aligned_cols=70 Identities=39% Similarity=0.651 Sum_probs=62.2
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHHhcCCCccEEEEE
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTLL 630 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L~~~~~V~~v~~v 630 (656)
|.+...|+||++++|+.+|+++++||..+.+.+...++.+.+.+.++.....+++++|+++++|.+++++
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~~~V~~v~~~ 71 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSPVPEEVLEELKALPGIIRVRLI 71 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCCCCHHHHHHHHcCCCeEEEEEC
Confidence 6678999999999999999999999999999765445788899999888777999999999999999874
No 97
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.37 E-value=1.2e-06 Score=95.92 Aligned_cols=94 Identities=26% Similarity=0.367 Sum_probs=74.1
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHH-HHcCCe----e---cCHHHHhccCCEEEEccCCC-c
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKA-RAVGVE----L---VSFDQALATADFISLHMPLN-P 295 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a-~~~g~~----~---~~l~ell~~aDvV~l~~Plt-~ 295 (656)
.+.++++.|+|.|.+|+.+++.++++|++|.++|++.. .+.+ ...+.. . .++.+.++++|+|+.+++.+ .
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 36778999999999999999999999999999998752 2222 223331 1 24677889999999998653 2
Q ss_pred cccccccHHHHhcCCCCcEEEEcC
Q 006212 296 TTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 296 ~T~~li~~~~l~~mK~gailINva 319 (656)
.+..+++++.++.||++.+|||++
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEe
Confidence 345688999999999999999997
No 98
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.36 E-value=8.4e-06 Score=86.79 Aligned_cols=109 Identities=19% Similarity=0.312 Sum_probs=70.6
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHH-----cC--------------Cee-cCHHHHhccCCEEE
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARA-----VG--------------VEL-VSFDQALATADFIS 288 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~-----~g--------------~~~-~~l~ell~~aDvV~ 288 (656)
++|+|||.|.||..+|..+...|++|++||++.. .+.+.+ .+ +.. .++++.+++||+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 5899999999999999999999999999998652 222221 12 122 36778899999999
Q ss_pred EccCCCcccc-ccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc-CCeEEE
Q 006212 289 LHMPLNPTTS-KIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQA 341 (656)
Q Consensus 289 l~~Plt~~T~-~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~-g~i~gA 341 (656)
+|+|...+.. .++ .+.-..++++++|+....| + ....+.+.+.. .++.|+
T Consensus 85 ~av~~~~~~~~~v~-~~l~~~~~~~~ii~s~tsg-~-~~~~l~~~~~~~~~~ig~ 136 (311)
T PRK06130 85 EAVPEKLELKRDVF-ARLDGLCDPDTIFATNTSG-L-PITAIAQAVTRPERFVGT 136 (311)
T ss_pred EeccCcHHHHHHHH-HHHHHhCCCCcEEEECCCC-C-CHHHHHhhcCCcccEEEE
Confidence 9999554322 333 2222346777776433333 2 34466655543 344343
No 99
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.36 E-value=1.7e-06 Score=70.39 Aligned_cols=71 Identities=32% Similarity=0.652 Sum_probs=61.8
Q ss_pred EEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHHhcCCCccEEEEE
Q 006212 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTLL 630 (656)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L~~~~~V~~v~~v 630 (656)
+|.+.+.|+||+++.++..|+++++||.++.......++.+.+.+.+++...++++++|+++++|.+++++
T Consensus 1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~l~~~~~v~~v~~~ 71 (71)
T cd04903 1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQPIDEEVIEEIKKIPNIHQVILI 71 (71)
T ss_pred CEEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCCCCHHHHHHHHcCCCceEEEEC
Confidence 46678899999999999999999999999988653346778888999988777999999999999999874
No 100
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.32 E-value=6.4e-06 Score=91.32 Aligned_cols=100 Identities=26% Similarity=0.345 Sum_probs=69.8
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-hHHH-------------------HcC-Cee-cCHHHHhccCCEEE
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKAR-------------------AVG-VEL-VSFDQALATADFIS 288 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~a~-------------------~~g-~~~-~~l~ell~~aDvV~ 288 (656)
+|||||+|.||..+|..|...|++|++||++... +... ..| +.. .++++++++||+|+
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advvi 81 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVII 81 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEEE
Confidence 7999999999999999999999999999987532 1111 123 333 36788899999999
Q ss_pred EccCCCccc------ccccc--HHHHhcCCCCcEEEEcCCCchhcHHHHH
Q 006212 289 LHMPLNPTT------SKIFN--DETFAKMKKGVRIVNVARGGVIDEEALV 330 (656)
Q Consensus 289 l~~Plt~~T------~~li~--~~~l~~mK~gailINvaRg~ivde~aL~ 330 (656)
+|+|..... ..+.. ......+++|.++|+++.-.+=..+.+.
T Consensus 82 i~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~ 131 (411)
T TIGR03026 82 ICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVV 131 (411)
T ss_pred EEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHH
Confidence 999943221 11221 3345568999999999864443344453
No 101
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.31 E-value=2.1e-06 Score=90.26 Aligned_cols=102 Identities=11% Similarity=0.151 Sum_probs=73.1
Q ss_pred CCEEEEEecChhHHHHHHHHhcCC----CEEEEECCCCC-h-hH-HHHcCCeec-CHHHHhccCCEEEEccCCCcccccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLG----MNVIAHDPYAP-A-DK-ARAVGVELV-SFDQALATADFISLHMPLNPTTSKI 300 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G----~~Vi~~d~~~~-~-~~-a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~l 300 (656)
+.+|||||+|+||+++|+.+...| .+|+++|+... . +. ....|+... +..+++++||+|++|+| .......
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~-p~~~~~v 81 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMK-PKDVAEA 81 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeC-HHHHHHH
Confidence 568999999999999999998776 78999998642 1 22 233577544 78889999999999999 3344444
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHh
Q 006212 301 FNDETFAKMKKGVRIVNVARGGVIDEEALVRALD 334 (656)
Q Consensus 301 i~~~~l~~mK~gailINvaRg~ivde~aL~~aL~ 334 (656)
+ ......++++.+||++.-|- ..+.+.+.+.
T Consensus 82 l-~~l~~~~~~~~liIs~~aGi--~~~~l~~~~~ 112 (279)
T PRK07679 82 L-IPFKEYIHNNQLIISLLAGV--STHSIRNLLQ 112 (279)
T ss_pred H-HHHHhhcCCCCEEEEECCCC--CHHHHHHHcC
Confidence 4 33344567889999986443 4455555443
No 102
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.30 E-value=1.4e-05 Score=84.49 Aligned_cols=113 Identities=21% Similarity=0.245 Sum_probs=75.6
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHH--------------cCC-------------eec-CHHHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARA--------------VGV-------------ELV-SFDQA 280 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~--------------~g~-------------~~~-~l~el 280 (656)
++|+|||.|.||..+|..+...|++|++||++.. .+.+.+ .|. ... ++ +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 6899999999999999999999999999998752 221110 111 122 34 56
Q ss_pred hccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc-CCeEEEEeeccC
Q 006212 281 LATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFT 347 (656)
Q Consensus 281 l~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~-g~i~gA~lDV~~ 347 (656)
+++||+|+.|+|...+.+..+-++.-..++++++|+.+..|- ....+.+.+.. .++ .+++.|.
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~~~r~--ig~hf~~ 146 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGI--MIAEIATALERKDRF--IGMHWFN 146 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCCcccE--EEEecCC
Confidence 799999999999665434333333444578999998877764 44555555543 344 4445443
No 103
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.27 E-value=1.2e-05 Score=91.35 Aligned_cols=104 Identities=23% Similarity=0.254 Sum_probs=72.5
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-hHHH-------------------HcC-Ceec-CHHHHhccCCEE
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKAR-------------------AVG-VELV-SFDQALATADFI 287 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~a~-------------------~~g-~~~~-~l~ell~~aDvV 287 (656)
++|||||.|.||.++|.++...|++|.+||+.... +... ..| +..+ ++++++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 58999999999999999999999999999997522 1111 112 3333 788999999999
Q ss_pred EEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc
Q 006212 288 SLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 288 ~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~ 335 (656)
+.++|...+.+..+-.+.-..++++++| +++..++ ....+.+.+..
T Consensus 85 ieavpe~~~vk~~l~~~l~~~~~~~~iI-~SsTsgi-~~s~l~~~~~~ 130 (495)
T PRK07531 85 QESVPERLDLKRRVLAEIDAAARPDALI-GSSTSGF-LPSDLQEGMTH 130 (495)
T ss_pred EEcCcCCHHHHHHHHHHHHhhCCCCcEE-EEcCCCC-CHHHHHhhcCC
Confidence 9999977655553333344457888754 5554444 34466665544
No 104
>PRK15023 L-serine deaminase; Provisional
Probab=98.24 E-value=4.1e-06 Score=92.44 Aligned_cols=145 Identities=13% Similarity=0.046 Sum_probs=96.0
Q ss_pred HHHHhHH-HHHhhcC--CCCceEEEEEEeecCCCCCcccccccHHHHHHhhhhhhhccc------------cccchHhHh
Q 006212 421 AKKLGRL-AVQLVSG--GSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFI------------NLVNADFTA 485 (656)
Q Consensus 421 aerlG~l-~~qL~~g--~~~~k~i~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~v------------n~vNA~~iA 485 (656)
+.|+|+. +++|... .+.+++++++++||++ .+.++|++|+|++.||++ +..+++ +..+++.++
T Consensus 22 Pmraa~~F~~~L~~~~~l~~~~rv~v~LyGSLA-~TGkGHGTD~Avl~GL~G-~~Pd~~d~~~~~~~~~~~~~~~~l~la 99 (454)
T PRK15023 22 PMKAGKQFVDDLVEKGLLDSVTRVAVDVYGSLS-LTGKGHHTDIAIIMGLAG-NEPATVDIDSIPGFIRDVEERERLLLA 99 (454)
T ss_pred HHHHHHHHHHHHhhccccCCccEEEEEEEchhh-hcCCCccccHHHHhhhcc-CCCCCcChhhhHHHHHHHhhcCccccC
Confidence 4567775 6777631 1268999999999999 999999999999999994 444446 557788888
Q ss_pred hccCceEEEE--------EeecCCCCCCCCceEEEEEEecccccceecCCCcEEEEEEEEEC-CeeEEEEEcceeEEeec
Q 006212 486 KQKGLRISEE--------RVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKF-GIPHLTRVGSFGVDASL 556 (656)
Q Consensus 486 ke~GI~v~~~--------~~~~~~~~~~~~ntv~i~l~~~~~~~~~~~~~~~~~~v~Gt~~g-G~~rI~~IdGf~V~~~g 556 (656)
+++ +.+.|. .... ..|||++++++.+ .++...+..+.|+| |.+++-+ ++.-+. .
T Consensus 100 ~~~-~~i~F~~~~di~f~~~~l----p~HPN~m~f~a~~---------~~~~~~e~~~ySIGGGfI~~~~--~~~~~~-~ 162 (454)
T PRK15023 100 QGR-HEVDFPRDNGMRFHNGNL----PLHENGMQIHAYN---------GDEVVYSKTYYSIGGGFIVDEE--HFGQDA-A 162 (454)
T ss_pred CCC-ceeecCcccceeECCCCC----CCCCCeeEEEEEe---------CCCcEEEEEEEEcCCceeeecc--cccccc-c
Confidence 665 666662 2222 2699999999984 23345689999998 6676542 111110 0
Q ss_pred CccEEEEEecCCC---CchhhHHhhhhcCCccccceEe
Q 006212 557 EGNLILCRQVDQP---GMIGKVGNILGEHNVNVNFMSV 591 (656)
Q Consensus 557 ~~~~Llv~~~D~P---GvIa~V~~iL~~~~INI~~m~v 591 (656)
. ..+-| -....+...-.+++++|..+-+
T Consensus 163 ~-------~~~~py~f~s~~ell~~c~~~~~~i~e~v~ 193 (454)
T PRK15023 163 N-------EVSVPYPFKSATELLAYCNETGYSLSGLAM 193 (454)
T ss_pred C-------CCCCCcCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 0 11222 2344566666777888877655
No 105
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.23 E-value=1.7e-05 Score=82.44 Aligned_cols=99 Identities=20% Similarity=0.298 Sum_probs=67.1
Q ss_pred CEEEEEecChhHHHHHHHHhcCC---CEEEEECCCC-ChhHHHH-cCCeec-CHHHHhccCCEEEEccCCCccccccccH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLG---MNVIAHDPYA-PADKARA-VGVELV-SFDQALATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G---~~Vi~~d~~~-~~~~a~~-~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~ 303 (656)
++|+|||+|.||+.+|+.+...| .+|.+||++. ..+...+ .|+... +.++++.+||+|++|+|.. ....++..
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~-~~~~v~~~ 81 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQ-VMEEVLSE 81 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHH-HHHHHHHH
Confidence 57999999999999999998777 7899999875 2333333 366543 6788899999999999832 33333322
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHhHh
Q 006212 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALD 334 (656)
Q Consensus 304 ~~l~~mK~gailINvaRg~ivde~aL~~aL~ 334 (656)
....+ +..||.+.-|- ..+.+.+.+.
T Consensus 82 -l~~~~--~~~vvs~~~gi--~~~~l~~~~~ 107 (267)
T PRK11880 82 -LKGQL--DKLVVSIAAGV--TLARLERLLG 107 (267)
T ss_pred -HHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence 22223 35677765442 4556655554
No 106
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.22 E-value=3.8e-06 Score=88.28 Aligned_cols=81 Identities=17% Similarity=0.295 Sum_probs=68.8
Q ss_pred cccccCCCEEEEEecChh-HHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGKV-GSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~I-G~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||.|.+ |+.+|..|...|+.|..++... -++.+.+++||+|+.++| +.+++
T Consensus 152 ~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t------------~~l~~~~~~ADIVV~avG----~~~~i 215 (285)
T PRK14189 152 IGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT------------RDLAAHTRQADIVVAAVG----KRNVL 215 (285)
T ss_pred cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC------------CCHHHHhhhCCEEEEcCC----CcCcc
Confidence 467999999999999999 9999999999999999876431 257889999999999999 45678
Q ss_pred cHHHHhcCCCCcEEEEcCCCc
Q 006212 302 NDETFAKMKKGVRIVNVARGG 322 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg~ 322 (656)
+. ..+|+|+++||+|--.
T Consensus 216 ~~---~~ik~gavVIDVGin~ 233 (285)
T PRK14189 216 TA---DMVKPGATVIDVGMNR 233 (285)
T ss_pred CH---HHcCCCCEEEEccccc
Confidence 77 4479999999998543
No 107
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.22 E-value=3.7e-06 Score=89.00 Aligned_cols=80 Identities=18% Similarity=0.216 Sum_probs=66.0
Q ss_pred cccccCCCEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||+++||| .|.+|+.+|.+|...|+.|.+|+.+.. ++++++++||+|+++++... ++
T Consensus 152 ~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~------------~l~e~~~~ADIVIsavg~~~----~v 215 (296)
T PRK14188 152 VHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR------------DLPAVCRRADILVAAVGRPE----MV 215 (296)
T ss_pred hCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC------------CHHHHHhcCCEEEEecCChh----hc
Confidence 35689999999999 999999999999999999999963211 47889999999999999543 34
Q ss_pred cHHHHhcCCCCcEEEEcCCC
Q 006212 302 NDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg 321 (656)
.... +|+|+++||+|--
T Consensus 216 ~~~~---lk~GavVIDvGin 232 (296)
T PRK14188 216 KGDW---IKPGATVIDVGIN 232 (296)
T ss_pred chhe---ecCCCEEEEcCCc
Confidence 4332 8999999999843
No 108
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.20 E-value=5e-05 Score=86.13 Aligned_cols=185 Identities=21% Similarity=0.255 Sum_probs=112.5
Q ss_pred CCeEEE-EcCCCCCCHHHHHhcCCcceeEEecccccCccchhhHHhcCceeecCCCCC--hhhHHHHHHHHHHHH--Hhc
Q 006212 130 QCDALI-VRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIAN--TVAAAEHGIALLASM--ARN 204 (656)
Q Consensus 130 ~~d~li-v~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~~aa~~~GI~V~n~p~~n--~~~vAE~~lal~L~~--~R~ 204 (656)
++|+|+ +. +.+.+-++.++++--+|+...-..|.=-++++.++||.+..---.. +.+-.=.+++-|-.+ .|-
T Consensus 65 ~~diilkV~---~P~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAGy~A 141 (509)
T PRK09424 65 QSDIILKVN---APSDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAGYRA 141 (509)
T ss_pred cCCEEEEeC---CCCHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhHHHH
Confidence 578777 32 2345556666656677777666555555788899999887532211 000000111111111 111
Q ss_pred hhHHHHHHHccccccccc-cccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec--CH---
Q 006212 205 VSQADASIKAGKWLRSKY-VGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV--SF--- 277 (656)
Q Consensus 205 i~~~~~~~~~g~W~~~~~-~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~--~l--- 277 (656)
+..+.. .-++...... .--...|.+|.|+|.|.+|...++.++.+|.+|+++|.+. ..+.++++|...+ +.
T Consensus 142 v~~aa~--~~~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~ 219 (509)
T PRK09424 142 VIEAAH--EFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEE 219 (509)
T ss_pred HHHHHH--HhcccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccc
Confidence 111111 1111111000 0013469999999999999999999999999999999886 5677888887632 11
Q ss_pred -----------------------HHHhccCCEEEEccCCCcc-ccccccHHHHhcCCCCcEEEEcC
Q 006212 278 -----------------------DQALATADFISLHMPLNPT-TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 278 -----------------------~ell~~aDvV~l~~Plt~~-T~~li~~~~l~~mK~gailINva 319 (656)
.+.++.+|+|+.|+..... .-.++.++.++.||+|.+++|++
T Consensus 220 ~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 220 GGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred cccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 1112579999998863221 23355688999999999999997
No 109
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.19 E-value=3.2e-06 Score=88.25 Aligned_cols=89 Identities=25% Similarity=0.442 Sum_probs=72.4
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCC-C-ChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccH
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY-A-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~-~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~ 303 (656)
-|.||||+|||||.-|..=|..|+..|.+|++--+. . +.+.|.+.|+++.+.+|++++||+|.+.+|... ...++..
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L~PDe~-q~~vy~~ 93 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMILLPDEQ-QKEVYEK 93 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEeCchhh-HHHHHHH
Confidence 589999999999999999999999999998764433 2 578899999999999999999999999999433 3345555
Q ss_pred HHHhcCCCCcEE
Q 006212 304 ETFAKMKKGVRI 315 (656)
Q Consensus 304 ~~l~~mK~gail 315 (656)
+.-..||+|..|
T Consensus 94 ~I~p~Lk~G~aL 105 (338)
T COG0059 94 EIAPNLKEGAAL 105 (338)
T ss_pred HhhhhhcCCceE
Confidence 555667877643
No 110
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.19 E-value=4.7e-06 Score=87.45 Aligned_cols=103 Identities=17% Similarity=0.263 Sum_probs=74.0
Q ss_pred CCEEEEEecChhHHHHHHHHhc--CCCEEE-EECCCCCh--hHHHHcCC--eecCHHHHhccCCEEEEccCCCccccccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKG--LGMNVI-AHDPYAPA--DKARAVGV--ELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~--~G~~Vi-~~d~~~~~--~~a~~~g~--~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
..+|||||+|.||+.+++.+.. .++++. +||+.... +.+...|. .+.++++++.++|+|++|+|.. +..-+
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~--~h~e~ 83 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPAS--VLRAI 83 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcH--HHHHH
Confidence 4789999999999999999985 488876 57876522 23344453 2458999999999999999943 22222
Q ss_pred cHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcC
Q 006212 302 NDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g 336 (656)
. ...++.|.-++..+.+.+.+.++|.++.+++
T Consensus 84 ~---~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~ 115 (271)
T PRK13302 84 V---EPVLAAGKKAIVLSVGALLRNEDLIDLARQN 115 (271)
T ss_pred H---HHHHHcCCcEEEecchhHHhHHHHHHHHHHc
Confidence 2 3335666666777788887788888877664
No 111
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.18 E-value=2.7e-05 Score=88.58 Aligned_cols=116 Identities=23% Similarity=0.251 Sum_probs=80.9
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhH-----------HHHcC-------------Cee-cCHHHHhcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADK-----------ARAVG-------------VEL-VSFDQALAT 283 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~-----------a~~~g-------------~~~-~~l~ell~~ 283 (656)
++|||||.|.||..||..+...|++|.+||++.. .+. ..+.| +.. .++++ +++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~ 84 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD 84 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence 5799999999999999999999999999998752 221 12223 122 36765 579
Q ss_pred CCEEEEccCCCccccccccHHHHhcCCCCcEEE-EcCCCchhcHHHHHHhHhc-CCeEEEEeeccCCCCC
Q 006212 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIV-NVARGGVIDEEALVRALDS-GVVAQAALDVFTEEPP 351 (656)
Q Consensus 284 aDvV~l~~Plt~~T~~li~~~~l~~mK~gailI-NvaRg~ivde~aL~~aL~~-g~i~gA~lDV~~~EP~ 351 (656)
||+|+.|+|...+.+..+-.+.-..++++++|. |++.-.+ ..+.+.++. .++ .|++.|.+-|.
T Consensus 85 aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~p~r~--~G~HFf~Papv 149 (503)
T TIGR02279 85 AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLARPERV--AGLHFFNPAPV 149 (503)
T ss_pred CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCcccce--EEEeccCcccc
Confidence 999999999887777665555445688888876 7765554 345555543 334 66777664443
No 112
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.18 E-value=7.7e-06 Score=87.83 Aligned_cols=86 Identities=29% Similarity=0.357 Sum_probs=68.0
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHc--------C------Cee-cCHHHHhccCCEEEEccCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAV--------G------VEL-VSFDQALATADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~--------g------~~~-~~l~ell~~aDvV~l~~Pl 293 (656)
.+|+|||.|.||..+|.+|...|++|.+|+++.. .+..... | +.. .++++.++.+|+|++++|.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~~ 84 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVPS 84 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECch
Confidence 5799999999999999999999999999999742 2222222 3 222 3788889999999999995
Q ss_pred CccccccccHHHHhcCCCCcEEEEcCCC
Q 006212 294 NPTTSKIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 294 t~~T~~li~~~~l~~mK~gailINvaRg 321 (656)
.. + ++.++.++++.++|+++.|
T Consensus 85 ~~-~-----~~v~~~l~~~~~vi~~~~G 106 (328)
T PRK14618 85 KA-L-----RETLAGLPRALGYVSCAKG 106 (328)
T ss_pred HH-H-----HHHHHhcCcCCEEEEEeec
Confidence 52 2 5566779999999999987
No 113
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.17 E-value=7.4e-06 Score=86.79 Aligned_cols=106 Identities=19% Similarity=0.246 Sum_probs=77.9
Q ss_pred HHHHHHHHhcCCCEEEEECCCCCh------hHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCc
Q 006212 241 GSEVARRAKGLGMNVIAHDPYAPA------DKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGV 313 (656)
Q Consensus 241 G~~vA~~lk~~G~~Vi~~d~~~~~------~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~ga 313 (656)
|+.||++|...|+.|++||++... +.+.+.|+..+ +..+++++||+|++|+|..+.++.++ ...+..+++|+
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga 110 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA 110 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence 889999999999999999986421 24566788766 69999999999999999777777776 55788899999
Q ss_pred EEEEcCCCchhcHHHHHHhHhcC-CeEEEEeeccCCCC
Q 006212 314 RIVNVARGGVIDEEALVRALDSG-VVAQAALDVFTEEP 350 (656)
Q Consensus 314 ilINvaRg~ivde~aL~~aL~~g-~i~gA~lDV~~~EP 350 (656)
++||++..... .++..|+.. +..---+-|...+|
T Consensus 111 IVID~STIsP~---t~~~~~e~~l~~~r~d~~v~s~HP 145 (341)
T TIGR01724 111 VICNTCTVSPV---VLYYSLEKILRLKRTDVGISSMHP 145 (341)
T ss_pred EEEECCCCCHH---HHHHHHHHHhhcCccccCeeccCC
Confidence 99999876554 444444331 11112234566666
No 114
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.17 E-value=3.9e-06 Score=89.38 Aligned_cols=90 Identities=22% Similarity=0.285 Sum_probs=67.9
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHc--------------CCee-cCHHHHhccCCEEEEccCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAV--------------GVEL-VSFDQALATADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~--------------g~~~-~~l~ell~~aDvV~l~~Pl 293 (656)
++|+|||+|.||..+|.+|...|++|.+||+.. ..+...+. ++.. .++++.+++||+|++|+|.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 479999999999999999999999999999874 22333332 2333 3788889999999999994
Q ss_pred CccccccccHHHHhcCCCCcEEEEcCCC
Q 006212 294 NPTTSKIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 294 t~~T~~li~~~~l~~mK~gailINvaRg 321 (656)
..+..++ ......+++++++|++..|
T Consensus 82 -~~~~~v~-~~l~~~~~~~~~vi~~~ng 107 (325)
T PRK00094 82 -QALREVL-KQLKPLLPPDAPIVWATKG 107 (325)
T ss_pred -HHHHHHH-HHHHhhcCCCCEEEEEeec
Confidence 4455555 2344557889999999754
No 115
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.15 E-value=3e-05 Score=85.46 Aligned_cols=128 Identities=14% Similarity=0.173 Sum_probs=81.2
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-hHHHH----------------cCCee---cCHHHHhccCCEEEEc
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA----------------VGVEL---VSFDQALATADFISLH 290 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~a~~----------------~g~~~---~~l~ell~~aDvV~l~ 290 (656)
+|+|||+|.||..+|..+. .|++|++||..... +...+ .+... .+..+.+++||+|++|
T Consensus 2 kI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii~ 80 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVIIA 80 (388)
T ss_pred EEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEEe
Confidence 6999999999999997665 59999999987532 22211 12222 1367788999999999
Q ss_pred cCCCcccc-cccc------H-HHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCC---Ccccc
Q 006212 291 MPLNPTTS-KIFN------D-ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKD---SKLVQ 359 (656)
Q Consensus 291 ~Plt~~T~-~li~------~-~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~---~~L~~ 359 (656)
+|...+-+ ...+ . +.+..+++|.++|+.+.-.+=..+.+.+.+.+..+ +|.+|..... ..++.
T Consensus 81 Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v------~~~PE~l~~G~a~~d~~~ 154 (388)
T PRK15057 81 TPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENI------IFSPEFLREGKALYDNLH 154 (388)
T ss_pred CCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCcE------EECcccccCCcccccccC
Confidence 99442211 1111 1 22334799999999998776566777666654333 1455644322 23455
Q ss_pred CCcEEE
Q 006212 360 HENVTV 365 (656)
Q Consensus 360 ~~nvil 365 (656)
.|.+++
T Consensus 155 p~rvv~ 160 (388)
T PRK15057 155 PSRIVI 160 (388)
T ss_pred CCEEEE
Confidence 556643
No 116
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.15 E-value=6.5e-06 Score=86.53 Aligned_cols=79 Identities=20% Similarity=0.272 Sum_probs=66.3
Q ss_pred cccccCCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||+++|||. |.+|+.+|..|...|+.|..|.... .++.+.+++||+|+.+++... ++
T Consensus 152 ~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t------------~~l~~~~~~ADIVI~avg~~~----~v 215 (284)
T PRK14179 152 YNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRT------------RNLAEVARKADILVVAIGRGH----FV 215 (284)
T ss_pred hCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCC------------CCHHHHHhhCCEEEEecCccc----cC
Confidence 477999999999999 9999999999999999999984321 158889999999999999443 45
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006212 302 NDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaR 320 (656)
.... +|+|+++||+|-
T Consensus 216 ~~~~---ik~GavVIDvgi 231 (284)
T PRK14179 216 TKEF---VKEGAVVIDVGM 231 (284)
T ss_pred CHHH---ccCCcEEEEecc
Confidence 5443 799999999983
No 117
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.14 E-value=1.5e-06 Score=86.94 Aligned_cols=176 Identities=13% Similarity=0.195 Sum_probs=104.1
Q ss_pred EEEEEec-ChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcC
Q 006212 231 TLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKM 309 (656)
Q Consensus 231 tvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~m 309 (656)
+++|||- |.+|+-+++.++..|+.|. +++||+|++|+|.. .+. +.+..+
T Consensus 2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~------------------------~~~~DlVilavPv~-~~~-----~~i~~~ 51 (197)
T PRK06444 2 MEIIIGKNGRLGRVLCSILDDNGLGVY------------------------IKKADHAFLSVPID-AAL-----NYIESY 51 (197)
T ss_pred EEEEEecCCcHHHHHHHHHHhCCCEEE------------------------ECCCCEEEEeCCHH-HHH-----HHHHHh
Confidence 7899988 9999999999999999985 36899999999944 233 333334
Q ss_pred CCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCC----CCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHH
Q 006212 310 KKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPP----AKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIA 385 (656)
Q Consensus 310 K~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~----~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~ 385 (656)
. .+|+|+++-+-- +.+. .+ ++-+..|+ .+...|+ .++++++. ....++ .
T Consensus 52 ~--~~v~Dv~SvK~~----i~~~--~~-------~~vg~HPMfGp~~a~~~lf--~~~iv~~~--~~~~~~--------~ 104 (197)
T PRK06444 52 D--NNFVEISSVKWP----FKKY--SG-------KIVSIHPLFGPMSYNDGVH--RTVIFIND--ISRDNY--------L 104 (197)
T ss_pred C--CeEEeccccCHH----HHHh--cC-------CEEecCCCCCCCcCccccc--ceEEEECC--CCCHHH--------H
Confidence 3 379999975541 2221 11 33344443 2333455 46666543 222222 2
Q ss_pred HHHHHHHcCCCCCccccCCCCChhhhhhccchHHH-HHHHhHHH----HHhhcCCCCceEEEEEE----eecCCCCCccc
Q 006212 386 EAVVGALRGELSATAINAPMVPSEVLSELAPYVVL-AKKLGRLA----VQLVSGGSGIKSVKLIY----RSARDPDDLDT 456 (656)
Q Consensus 386 ~~i~~~l~g~~~~~~Vn~p~~~~~~~~~l~p~~~l-aerlG~l~----~qL~~g~~~~k~i~i~~----~Gs~a~~~~~~ 456 (656)
+.+.++++|- ..-.++++.++++--|+.- ..-++... ..++++ +|++.++.. .+++. +|.++
T Consensus 105 ~~~~~l~~G~------~~~~~t~eeHD~~~A~ishLpH~ia~al~~~~~~~~t~--~fr~l~ria~~~~~~~p~-lw~dI 175 (197)
T PRK06444 105 NEINEMFRGY------HFVEMTADEHDLLMSEIMVKPYIISMILKDIKSDIKTG--SFDKLLEVSEIKEKENWE-VFNDT 175 (197)
T ss_pred HHHHHHHcCC------EEEEeCHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCc--cHHHHHHHHHHhccCCHH-HHHHH
Confidence 3455556542 1124556666655432211 11122211 244555 788888776 78887 89999
Q ss_pred ccccHHHHHHhhhhhhhc
Q 006212 457 RILRAMITKGIIEPISAS 474 (656)
Q Consensus 457 ~~~~~a~l~GlL~~~~~~ 474 (656)
...|... +.+..+.+.
T Consensus 176 ~~~N~~a--~~~~~~~~~ 191 (197)
T PRK06444 176 IIYNPYT--NVINDLIER 191 (197)
T ss_pred HHHCchH--HHHHHHHHH
Confidence 8888766 566555443
No 118
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.14 E-value=2.6e-06 Score=68.77 Aligned_cols=65 Identities=26% Similarity=0.399 Sum_probs=55.2
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeecc-CccEEEEEEeCCCCCHHHHHHHhcCCC
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFR-RNHGIMAIGVDEEPNQDSLKEIGKVPA 623 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~-gg~al~~i~~D~~~~~e~l~~L~~~~~ 623 (656)
|.+.+..+|+||++++|+++|+++|+||..+...+... ....++.+..+....+.++++|+++++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 66 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEEDLEKLLEELEALPG 66 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGHGHHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCCCHHHHHHHHHcccC
Confidence 45778899999999999999999999999999987665 345666777888888899999998764
No 119
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.12 E-value=1.5e-05 Score=80.73 Aligned_cols=115 Identities=20% Similarity=0.317 Sum_probs=89.7
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-CHHHH---hccCCEEEEccCCCccccccccHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQA---LATADFISLHMPLNPTTSKIFNDE 304 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~l~el---l~~aDvV~l~~Plt~~T~~li~~~ 304 (656)
+++|.||||+||..+++|++..|.+|++||.++ ..+.+...|+... +++++ +..-.+|-+.+|-.+-|..++ ++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi-~~ 79 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI-DD 79 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH-HH
Confidence 479999999999999999999999999999987 5566777786543 67765 566789999999886676666 44
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccC
Q 006212 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFT 347 (656)
Q Consensus 305 ~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~ 347 (656)
.-..|.+|-++||-+-..--|.....+.|++..| ..+||-.
T Consensus 80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi--~flD~GT 120 (300)
T COG1023 80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGI--HFLDVGT 120 (300)
T ss_pred HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCC--eEEeccC
Confidence 5556899999999886655555555666777767 5567644
No 120
>PRK07680 late competence protein ComER; Validated
Probab=98.05 E-value=9.4e-06 Score=84.98 Aligned_cols=100 Identities=11% Similarity=0.240 Sum_probs=71.8
Q ss_pred EEEEEecChhHHHHHHHHhcCC----CEEEEECCCC-ChhHHHH-c-CCeec-CHHHHhccCCEEEEccCCCcccccccc
Q 006212 231 TLAVMGFGKVGSEVARRAKGLG----MNVIAHDPYA-PADKARA-V-GVELV-SFDQALATADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G----~~Vi~~d~~~-~~~~a~~-~-g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~ 302 (656)
+|||||+|.||+.+|+.|...| .+|.+||++. ..+...+ . |+... +..+++.+||+|++|+| ......++
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl- 79 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLL- 79 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHH-
Confidence 6999999999999999998777 3799999875 2222222 2 56544 78888999999999998 33344444
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHhHh
Q 006212 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALD 334 (656)
Q Consensus 303 ~~~l~~mK~gailINvaRg~ivde~aL~~aL~ 334 (656)
++....++++.+||+++-| + ..+.|.+.+.
T Consensus 80 ~~l~~~l~~~~~iis~~ag-~-~~~~L~~~~~ 109 (273)
T PRK07680 80 QKLAPHLTDEHCLVSITSP-I-SVEQLETLVP 109 (273)
T ss_pred HHHHhhcCCCCEEEEECCC-C-CHHHHHHHcC
Confidence 3333457788999999854 3 6666665544
No 121
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.05 E-value=1e-05 Score=84.01 Aligned_cols=99 Identities=13% Similarity=0.254 Sum_probs=69.6
Q ss_pred EEEEEecChhHHHHHHHHhcCCC---EEEEECCCCC-hhHH-HHc-CCee-cCHHHHhccCCEEEEccCCCccccccccH
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGM---NVIAHDPYAP-ADKA-RAV-GVEL-VSFDQALATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~---~Vi~~d~~~~-~~~a-~~~-g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~~ 303 (656)
+|||||+|+||+++++.+...|. .+.+||++.. .+.. ... ++.. .+.++++++||+|++|+| ......++..
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~~ 80 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLRA 80 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHHH
Confidence 79999999999999999987664 3578888652 2222 223 3544 378889999999999999 3434444432
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc
Q 006212 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 304 ~~l~~mK~gailINvaRg~ivde~aL~~aL~~ 335 (656)
+ .++++.++|.+.-| +..+.|.+.++.
T Consensus 81 --l-~~~~~~~vis~~ag--~~~~~l~~~~~~ 107 (258)
T PRK06476 81 --L-RFRPGQTVISVIAA--TDRAALLEWIGH 107 (258)
T ss_pred --h-ccCCCCEEEEECCC--CCHHHHHHHhCC
Confidence 2 25788899998733 466777666654
No 122
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.05 E-value=2e-05 Score=77.08 Aligned_cols=82 Identities=18% Similarity=0.297 Sum_probs=68.6
Q ss_pred cccCCCEEEEEecChh-HHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccH
Q 006212 225 VSLVGKTLAVMGFGKV-GSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 225 ~~l~gktvGIIGlG~I-G~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~ 303 (656)
..+.||++.|||.|.+ |..+|+.|+..|.+|...+++. .++.+.+.+||+|+.+++.. +++..
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~------------~~l~~~l~~aDiVIsat~~~----~ii~~ 103 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT------------KNLKEHTKQADIVIVAVGKP----GLVKG 103 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc------------hhHHHHHhhCCEEEEcCCCC----ceecH
Confidence 5799999999999996 8889999999999999988762 24778899999999999833 26777
Q ss_pred HHHhcCCCCcEEEEcCCCchhc
Q 006212 304 ETFAKMKKGVRIVNVARGGVID 325 (656)
Q Consensus 304 ~~l~~mK~gailINvaRg~ivd 325 (656)
+. ++++.++||+|.-.-+|
T Consensus 104 ~~---~~~~~viIDla~prdvd 122 (168)
T cd01080 104 DM---VKPGAVVIDVGINRVPD 122 (168)
T ss_pred HH---ccCCeEEEEccCCCccc
Confidence 64 58899999999777665
No 123
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.04 E-value=1.9e-05 Score=83.35 Aligned_cols=138 Identities=17% Similarity=0.250 Sum_probs=98.2
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCee-cCHHHHhc-cCCEEEEccCCCccccccccHHHH
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL-VSFDQALA-TADFISLHMPLNPTTSKIFNDETF 306 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~-~~l~ell~-~aDvV~l~~Plt~~T~~li~~~~l 306 (656)
-+.|||||+|++|+-+|+.+...|..|+.+|+....+.+...|... ..+.++++ +.|+|.+|+- ...+..++..--+
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlcts-ilsiekilatypf 130 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTS-ILSIEKILATYPF 130 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEeh-hhhHHHHHHhcCc
Confidence 3579999999999999999999999999999987666777788754 46777764 7999999986 3334455544456
Q ss_pred hcCCCCcEEEEcCCCchhcHHHHHHhHhcC-CeEEEEeeccCCCCCCCCCccccCCcEEEcCCCC
Q 006212 307 AKMKKGVRIVNVARGGVIDEEALVRALDSG-VVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLG 370 (656)
Q Consensus 307 ~~mK~gailINvaRg~ivde~aL~~aL~~g-~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g 370 (656)
+++|.|++++++-+-+-..-+++.+-|.+. -|. ..=-.|+++ ..++..-.+|-|+.--.+|
T Consensus 131 qrlrrgtlfvdvlSvKefek~lfekYLPkdfDIl-ctHpmfGPk--svnh~wqglpfVydkvRig 192 (480)
T KOG2380|consen 131 QRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDIL-CTHPMFGPK--SVNHEWQGLPFVYDKVRIG 192 (480)
T ss_pred hhhccceeEeeeeecchhHHHHHHHhCccccceE-eecCCcCCC--cCCCccccCceEEEEeecc
Confidence 779999999999988877777777766653 221 111233333 3344444567676655444
No 124
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.94 E-value=2.8e-05 Score=81.91 Aligned_cols=80 Identities=21% Similarity=0.295 Sum_probs=67.6
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||.|. +|+.+|..|...|++|..++.+. .++.+.+++||+|+.+++. .+++
T Consensus 152 ~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t------------~~l~~~~~~ADIVIsAvg~----p~~i 215 (286)
T PRK14175 152 ADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS------------KDMASYLKDADVIVSAVGK----PGLV 215 (286)
T ss_pred cCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------hhHHHHHhhCCEEEECCCC----Cccc
Confidence 46789999999999998 99999999999999999987642 2578899999999999983 3467
Q ss_pred cHHHHhcCCCCcEEEEcCCC
Q 006212 302 NDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg 321 (656)
..+. +|+|+++||+|--
T Consensus 216 ~~~~---vk~gavVIDvGi~ 232 (286)
T PRK14175 216 TKDV---VKEGAVIIDVGNT 232 (286)
T ss_pred CHHH---cCCCcEEEEcCCC
Confidence 7654 6999999999853
No 125
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.92 E-value=4.4e-05 Score=82.17 Aligned_cols=105 Identities=26% Similarity=0.346 Sum_probs=73.8
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCee-----------------c-CHHHHhccCCEEEEcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL-----------------V-SFDQALATADFISLHM 291 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~-----------------~-~l~ell~~aDvV~l~~ 291 (656)
++|+|||.|.||..+|.+|...|.+|.+||+....+...+.|... . +. +.++.+|+|++++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~v 81 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVTV 81 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEEe
Confidence 479999999999999999999999999999854333334444321 2 33 5678999999999
Q ss_pred CCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 292 PLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 292 Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
|. ++....+ ......++++++|+.+.-| +-..+.+.+.+...++
T Consensus 82 k~-~~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~ 125 (341)
T PRK08229 82 KS-AATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATV 125 (341)
T ss_pred cC-cchHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcE
Confidence 94 4444444 3344557889999988653 4345666666665444
No 126
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.92 E-value=4.8e-05 Score=80.01 Aligned_cols=101 Identities=13% Similarity=0.241 Sum_probs=70.4
Q ss_pred CEEEEEecChhHHHHHHHHhcCC----CEEEEECCCCCh--hHH-HHc-CCee-cCHHHHhccCCEEEEccCCCcccccc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLG----MNVIAHDPYAPA--DKA-RAV-GVEL-VSFDQALATADFISLHMPLNPTTSKI 300 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G----~~Vi~~d~~~~~--~~a-~~~-g~~~-~~l~ell~~aDvV~l~~Plt~~T~~l 300 (656)
.+|+|||+|+||+.+|+.+...| .+|++|+++... +.. ... ++.. .+..++++++|+|++|+| ......+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavp-p~~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVP-PLAVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecC-HHHHHHH
Confidence 47999999999999999998776 689999876421 111 222 2333 478888999999999999 3333333
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHh
Q 006212 301 FNDETFAKMKKGVRIVNVARGGVIDEEALVRALD 334 (656)
Q Consensus 301 i~~~~l~~mK~gailINvaRg~ivde~aL~~aL~ 334 (656)
+ .+....++++..||.+.-| +..+.|.+.+.
T Consensus 81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~ 111 (277)
T PRK06928 81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITP 111 (277)
T ss_pred H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 3 2222346778899998876 45667766554
No 127
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.90 E-value=6.5e-05 Score=64.97 Aligned_cols=67 Identities=31% Similarity=0.482 Sum_probs=56.8
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcC-CCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccH
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGL-GMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~-G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~ 303 (656)
..+.+++++|+|.|.+|+.++..+... +.+|.+||+ |+++.|+|.. +.+.+
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------di~i~~~~~~----~~~~~ 70 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------DILVTATPAG----VPVLE 70 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC------------------------CEEEEcCCCC----CCchH
Confidence 458899999999999999999999987 678999987 9999999843 34455
Q ss_pred HHHhcCCCCcEEEEcC
Q 006212 304 ETFAKMKKGVRIVNVA 319 (656)
Q Consensus 304 ~~l~~mK~gailINva 319 (656)
+....++++++++|++
T Consensus 71 ~~~~~~~~~~~v~~~a 86 (86)
T cd05191 71 EATAKINEGAVVIDLA 86 (86)
T ss_pred HHHHhcCCCCEEEecC
Confidence 5678899999999975
No 128
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=97.86 E-value=3.9e-05 Score=86.23 Aligned_cols=110 Identities=15% Similarity=0.159 Sum_probs=88.0
Q ss_pred hHHHHHHHHhcCCCEEEEECCCCC-hhHHHHc-----CCee-cCHHHHhcc---CCEEEEccCCCccccccccHHHHhcC
Q 006212 240 VGSEVARRAKGLGMNVIAHDPYAP-ADKARAV-----GVEL-VSFDQALAT---ADFISLHMPLNPTTSKIFNDETFAKM 309 (656)
Q Consensus 240 IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~-----g~~~-~~l~ell~~---aDvV~l~~Plt~~T~~li~~~~l~~m 309 (656)
||+.||++|...|++|.+||++.. .+...+. |+.. .+++++++. +|+|++++|..+.+..++ ...+..|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence 799999999999999999999863 2333332 3544 489998875 899999999888888888 4678889
Q ss_pred CCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCC
Q 006212 310 KKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEP 350 (656)
Q Consensus 310 K~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP 350 (656)
.+|.++||++....-+...+.+.+++..+.....=|++.++
T Consensus 80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~ 120 (459)
T PRK09287 80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE 120 (459)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence 99999999999888888888888888777555555777664
No 129
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=97.85 E-value=3.8e-05 Score=62.43 Aligned_cols=69 Identities=14% Similarity=0.313 Sum_probs=56.6
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCC--CCHHHHHHHhcCCCccEE
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE--PNQDSLKEIGKVPAIEEY 627 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~--~~~e~l~~L~~~~~V~~v 627 (656)
|+|.+...|+||+++.++.+|+++++||..+...+...++.+.+.+.++.. .-.+++++|+++++|.+|
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v 71 (72)
T cd04878 1 HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLNKLVDVLKV 71 (72)
T ss_pred CEEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCHHHHHHHHHHHhCCccEEEe
Confidence 578889999999999999999999999999998654346677777777753 233788999999998876
No 130
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.83 E-value=2.7e-05 Score=73.15 Aligned_cols=93 Identities=24% Similarity=0.355 Sum_probs=68.8
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCE-EEEECCCCC--hhHHHHc---CCeec---CHHHHhccCCEEEEccCCCcc
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMN-VIAHDPYAP--ADKARAV---GVELV---SFDQALATADFISLHMPLNPT 296 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~-Vi~~d~~~~--~~~a~~~---g~~~~---~l~ell~~aDvV~l~~Plt~~ 296 (656)
++.|+++.|||.|.+|+.++..|...|++ |..++|+.. .+.+... .+... ++.+.+.++|+|+.++|...
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~- 87 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGM- 87 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTS-
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCC-
Confidence 78999999999999999999999999986 999998752 2223333 23333 56667899999999998553
Q ss_pred ccccccHHHHhcCCCCc-EEEEcCCC
Q 006212 297 TSKIFNDETFAKMKKGV-RIVNVARG 321 (656)
Q Consensus 297 T~~li~~~~l~~mK~ga-ilINvaRg 321 (656)
..+.++.+...++.. +++|.+.-
T Consensus 88 --~~i~~~~~~~~~~~~~~v~Dla~P 111 (135)
T PF01488_consen 88 --PIITEEMLKKASKKLRLVIDLAVP 111 (135)
T ss_dssp --TSSTHHHHTTTCHHCSEEEES-SS
T ss_pred --cccCHHHHHHHHhhhhceeccccC
Confidence 267888877655443 89999753
No 131
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.82 E-value=6.3e-05 Score=75.42 Aligned_cols=87 Identities=26% Similarity=0.361 Sum_probs=62.8
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-h--HHHHcCC--eecCHHHHhccCCEEEEccCCCccccccccHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-D--KARAVGV--ELVSFDQALATADFISLHMPLNPTTSKIFNDE 304 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~--~a~~~g~--~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~ 304 (656)
++++|+|.|+||+.+|+++...|++|+.-+++.+. . .++.++. +..+.++..+.||+|++++|... ...+ .++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a-~~~v-~~~ 79 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEA-IPDV-LAE 79 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHH-HHhH-HHH
Confidence 58999999999999999999999999988665432 1 2233333 34578999999999999999543 2222 233
Q ss_pred HHhcCCCCcEEEEcC
Q 006212 305 TFAKMKKGVRIVNVA 319 (656)
Q Consensus 305 ~l~~mK~gailINva 319 (656)
....+. |.++||+.
T Consensus 80 l~~~~~-~KIvID~t 93 (211)
T COG2085 80 LRDALG-GKIVIDAT 93 (211)
T ss_pred HHHHhC-CeEEEecC
Confidence 343344 78888875
No 132
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.82 E-value=1.6e-05 Score=74.10 Aligned_cols=90 Identities=20% Similarity=0.411 Sum_probs=54.8
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEE-CCCC-ChhHHHH-cC-CeecCHHHHhccCCEEEEccCCCccccccccH
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAH-DPYA-PADKARA-VG-VELVSFDQALATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~-d~~~-~~~~a~~-~g-~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~ 303 (656)
...+|||||.|+.|..+++.|+..|+.|.++ +++. +.+.+.. .+ ....+++++++++|++++++|.. ....+. +
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-aI~~va-~ 86 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-AIAEVA-E 86 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-HHHHHH-H
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-HHHHHH-H
Confidence 3468999999999999999999999999885 5543 2233222 22 23457889999999999999944 222222 2
Q ss_pred HHHhc--CCCCcEEEEcC
Q 006212 304 ETFAK--MKKGVRIVNVA 319 (656)
Q Consensus 304 ~~l~~--mK~gailINva 319 (656)
+.-.. .++|.+++-|+
T Consensus 87 ~La~~~~~~~g~iVvHtS 104 (127)
T PF10727_consen 87 QLAQYGAWRPGQIVVHTS 104 (127)
T ss_dssp HHHCC--S-TT-EEEES-
T ss_pred HHHHhccCCCCcEEEECC
Confidence 22222 58999999996
No 133
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=97.80 E-value=4.6e-05 Score=75.18 Aligned_cols=128 Identities=20% Similarity=0.272 Sum_probs=77.8
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHH----H-------HcC-------------Cee-cCHHHHhccC
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKA----R-------AVG-------------VEL-VSFDQALATA 284 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a----~-------~~g-------------~~~-~~l~ell~~a 284 (656)
+|+|||.|.||+.+|..+...|++|..||++.. .+.+ . +.| +.+ .+++++. +|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 699999999999999999999999999998752 1111 1 111 122 3688888 99
Q ss_pred CEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc-CCeEEEEeeccCCCCCCCCCccccCCcE
Q 006212 285 DFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFTEEPPAKDSKLVQHENV 363 (656)
Q Consensus 285 DvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~-g~i~gA~lDV~~~EP~~~~~~L~~~~nv 363 (656)
|+|+=++|...+.+.-+-.+.-+.++++++|...+++= ....|...+.. .++ .|++.|. |+ ...||.+ +
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl--~i~~la~~~~~p~R~--ig~Hf~~--P~-~~~~lVE---v 149 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSL--SISELAAALSRPERF--IGMHFFN--PP-HLMPLVE---V 149 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS---HHHHHTTSSTGGGE--EEEEE-S--ST-TT--EEE---E
T ss_pred heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCC--CHHHHHhccCcCceE--EEEeccc--cc-ccCceEE---E
Confidence 99999999776666555455555678888887665443 34555555543 455 5566663 43 3457775 5
Q ss_pred EEcCCC
Q 006212 364 TVTPHL 369 (656)
Q Consensus 364 ilTPH~ 369 (656)
+-.|+.
T Consensus 150 v~~~~T 155 (180)
T PF02737_consen 150 VPGPKT 155 (180)
T ss_dssp EE-TTS
T ss_pred eCCCCC
Confidence 666653
No 134
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.79 E-value=0.00013 Score=76.30 Aligned_cols=101 Identities=24% Similarity=0.329 Sum_probs=77.0
Q ss_pred CEEEEEecChhHHHHHHHHhcCC----CEEEEECCCCC-h-hHHHHcCCe-ecCHHHHhccCCEEEEccCCCcccccccc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLG----MNVIAHDPYAP-A-DKARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G----~~Vi~~d~~~~-~-~~a~~~g~~-~~~l~ell~~aDvV~l~~Plt~~T~~li~ 302 (656)
++|||||+|+||+.++..+...| .+|++.+|+.. . ..+.++|+. ..+.++++.++|+|+|++. |+ .-
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK--Pq----~~ 75 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK--PQ----DL 75 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC--hH----hH
Confidence 58999999999999999999877 68999999863 3 356677776 3467889999999999997 42 22
Q ss_pred HHHHhcCC---CCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 303 DETFAKMK---KGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 303 ~~~l~~mK---~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
.+.+..+| ++.+||.++-| +..+.|.+.+...++
T Consensus 76 ~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~~~~v 112 (266)
T COG0345 76 EEVLSKLKPLTKDKLVISIAAG--VSIETLERLLGGLRV 112 (266)
T ss_pred HHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcCCCce
Confidence 45566666 68899999866 356667666654444
No 135
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.79 E-value=0.00032 Score=76.04 Aligned_cols=141 Identities=22% Similarity=0.262 Sum_probs=87.0
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhH--------------------HHHcC-Ceec-CHHHHhccCCEE
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK--------------------ARAVG-VELV-SFDQALATADFI 287 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~--------------------a~~~g-~~~~-~l~ell~~aDvV 287 (656)
.+|||||||-||-++|..+...|++|+|||-+...-. +.+.| .+.. +.+ .++.||++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~-~l~~~dv~ 88 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPE-ELKECDVF 88 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChh-hcccCCEE
Confidence 6899999999999999999999999999996542111 11222 1222 333 35599999
Q ss_pred EEccCCCccccc-ccc--------HHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcC--CeEEEEeec---cCCCCCC-
Q 006212 288 SLHMPLNPTTSK-IFN--------DETFAKMKKGVRIVNVARGGVIDEEALVRALDSG--VVAQAALDV---FTEEPPA- 352 (656)
Q Consensus 288 ~l~~Plt~~T~~-li~--------~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g--~i~gA~lDV---~~~EP~~- 352 (656)
++|+| ||-+.+ --+ +..-..||+|.++|==+....=..+.++.-|.+. .+ ..+-|+ |.+|-..
T Consensus 89 iI~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL-~~~~Df~laysPERv~P 166 (436)
T COG0677 89 IICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGL-KFGEDFYLAYSPERVLP 166 (436)
T ss_pred EEEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCC-cccceeeEeeCccccCC
Confidence 99999 664442 111 1223348999998877764444455554444332 11 122343 3333211
Q ss_pred --CCCccccCCcEEEcCCCCCCcHHHHH
Q 006212 353 --KDSKLVQHENVTVTPHLGASTKEAQE 378 (656)
Q Consensus 353 --~~~~L~~~~nvilTPH~g~~T~ea~~ 378 (656)
....+.++|++ +||.|+++-+
T Consensus 167 G~~~~el~~~~kV-----IgG~tp~~~e 189 (436)
T COG0677 167 GNVLKELVNNPKV-----IGGVTPKCAE 189 (436)
T ss_pred CchhhhhhcCCce-----eecCCHHHHH
Confidence 22356678888 7899887643
No 136
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.77 E-value=5.6e-05 Score=72.76 Aligned_cols=89 Identities=21% Similarity=0.382 Sum_probs=61.0
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHcC--------C------ee-cCHHHHhccCCEEEEccCCC
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVG--------V------EL-VSFDQALATADFISLHMPLN 294 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~g--------~------~~-~~l~ell~~aDvV~l~~Plt 294 (656)
+|+|+|.|+.|.++|..+...|.+|..|.+... .+...+.+ + .. .++++++++||+|++++|..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence 689999999999999999999999999998741 12111111 1 12 37999999999999999933
Q ss_pred ccccccccHHHHhcCCCCcEEEEcCCC
Q 006212 295 PTTSKIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 295 ~~T~~li~~~~l~~mK~gailINvaRg 321 (656)
..+.++ ++....++++..+|++..|
T Consensus 81 -~~~~~~-~~l~~~l~~~~~ii~~~KG 105 (157)
T PF01210_consen 81 -AHREVL-EQLAPYLKKGQIIISATKG 105 (157)
T ss_dssp -GHHHHH-HHHTTTSHTT-EEEETS-S
T ss_pred -HHHHHH-HHHhhccCCCCEEEEecCC
Confidence 233333 3444457889999999876
No 137
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=97.77 E-value=8.2e-05 Score=72.08 Aligned_cols=82 Identities=21% Similarity=0.303 Sum_probs=58.6
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.+++||++.|||-+. +|+.+|..|...|+.|..++.+. .++++.+++||+|+.+++. .+++
T Consensus 30 ~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T------------~~l~~~~~~ADIVVsa~G~----~~~i 93 (160)
T PF02882_consen 30 YGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT------------KNLQEITRRADIVVSAVGK----PNLI 93 (160)
T ss_dssp TT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS------------SSHHHHHTTSSEEEE-SSS----TT-B
T ss_pred cCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC------------CcccceeeeccEEeeeecc----cccc
Confidence 46789999999999995 99999999999999999987653 2478889999999999983 3456
Q ss_pred cHHHHhcCCCCcEEEEcCCCch
Q 006212 302 NDETFAKMKKGVRIVNVARGGV 323 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg~i 323 (656)
..+ .+|+|+++||++.-..
T Consensus 94 ~~~---~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 94 KAD---WIKPGAVVIDVGINYV 112 (160)
T ss_dssp -GG---GS-TTEEEEE--CEEE
T ss_pred ccc---cccCCcEEEecCCccc
Confidence 554 3699999999986543
No 138
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.74 E-value=9.5e-05 Score=73.35 Aligned_cols=97 Identities=22% Similarity=0.266 Sum_probs=59.9
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcC---------------------Cee-cCHHHHhccCCEE
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG---------------------VEL-VSFDQALATADFI 287 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g---------------------~~~-~~l~ell~~aDvV 287 (656)
++|+|||+|.+|..+|..+...|++|++||.+...-.....| ... .+.++.+++||++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 589999999999999999999999999999753211111111 122 2577889999999
Q ss_pred EEccCCCcccc-cccc--------HHHHhcCCCCcEEEEcCCCchhcHH
Q 006212 288 SLHMPLNPTTS-KIFN--------DETFAKMKKGVRIVNVARGGVIDEE 327 (656)
Q Consensus 288 ~l~~Plt~~T~-~li~--------~~~l~~mK~gailINvaRg~ivde~ 327 (656)
++|+| ||... +..+ +.....++++.++|.-+.-.+=..+
T Consensus 81 ~I~Vp-TP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~ 128 (185)
T PF03721_consen 81 FICVP-TPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTE 128 (185)
T ss_dssp EE-----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHH
T ss_pred EEecC-CCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeeh
Confidence 99999 44322 2212 2344458999999999975554444
No 139
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=97.74 E-value=0.00012 Score=79.50 Aligned_cols=93 Identities=20% Similarity=0.249 Sum_probs=71.4
Q ss_pred HHHHHHHHhcCCCEEEEECCCCC------hhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCc
Q 006212 241 GSEVARRAKGLGMNVIAHDPYAP------ADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGV 313 (656)
Q Consensus 241 G~~vA~~lk~~G~~Vi~~d~~~~------~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~ga 313 (656)
|..+|.+|...|++|++||++.. .+...+.|+... +..+++++||+|++|+|....++.++ ......+++++
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~ 110 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENA 110 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCC
Confidence 78999999989999999998753 123456677654 78889999999999999544366666 35667789999
Q ss_pred EEEEcCCCchhcH-HHHHHhHh
Q 006212 314 RIVNVARGGVIDE-EALVRALD 334 (656)
Q Consensus 314 ilINvaRg~ivde-~aL~~aL~ 334 (656)
+|||++.+..... +.+.+.+.
T Consensus 111 IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 111 VICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred EEEEecCCCHHHHHHHHHHHhc
Confidence 9999999877654 55655554
No 140
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=97.73 E-value=0.00015 Score=72.12 Aligned_cols=97 Identities=21% Similarity=0.220 Sum_probs=69.6
Q ss_pred ccccccccccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhH--HHHcCCee---cC----HHHHhccCC
Q 006212 216 KWLRSKYVGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADK--ARAVGVEL---VS----FDQALATAD 285 (656)
Q Consensus 216 ~W~~~~~~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~--a~~~g~~~---~~----l~ell~~aD 285 (656)
-|++....+.++.||++.|||-+. +|+++|..|...|+.|..+|.+..... ..+..-.. .+ +.+.+++||
T Consensus 49 i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~AD 128 (197)
T cd01079 49 IYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSD 128 (197)
T ss_pred CcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCC
Confidence 344444457899999999999986 699999999999999999974321100 00011111 12 778999999
Q ss_pred EEEEccCCCcccccc-ccHHHHhcCCCCcEEEEcC
Q 006212 286 FISLHMPLNPTTSKI-FNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 286 vV~l~~Plt~~T~~l-i~~~~l~~mK~gailINva 319 (656)
+|+.+++. .++ +..+. .|+|+++||+|
T Consensus 129 IVIsAvG~----~~~~i~~d~---ik~GavVIDVG 156 (197)
T cd01079 129 VVITGVPS----PNYKVPTEL---LKDGAICINFA 156 (197)
T ss_pred EEEEccCC----CCCccCHHH---cCCCcEEEEcC
Confidence 99999993 344 66655 48999999998
No 141
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=97.71 E-value=7.5e-05 Score=75.76 Aligned_cols=89 Identities=21% Similarity=0.258 Sum_probs=60.9
Q ss_pred CEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCCCh-hHHHH--------cCC----eecCHHHHhccCCEEEEccCCCc
Q 006212 230 KTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA--------VGV----ELVSFDQALATADFISLHMPLNP 295 (656)
Q Consensus 230 ktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~a~~--------~g~----~~~~l~ell~~aDvV~l~~Plt~ 295 (656)
++|+||| .|.||+.+|++|...|.+|.++++.... +.... .|+ ...+..+.++++|+|++|+|..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~- 79 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWD- 79 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHH-
Confidence 3799997 9999999999999999999999886522 11111 122 2236778899999999999933
Q ss_pred cccccccHHHHhcCCCCcEEEEcCCC
Q 006212 296 TTSKIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 296 ~T~~li~~~~l~~mK~gailINvaRg 321 (656)
....++. +.-..++ +.++|++.-|
T Consensus 80 ~~~~~l~-~l~~~l~-~~vvI~~~ng 103 (219)
T TIGR01915 80 HVLKTLE-SLRDELS-GKLVISPVVP 103 (219)
T ss_pred HHHHHHH-HHHHhcc-CCEEEEeccC
Confidence 2333331 2212243 4799999765
No 142
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=97.71 E-value=3.3e-05 Score=78.13 Aligned_cols=126 Identities=11% Similarity=0.177 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHH--hcCCCEEEE-ECCCCChhHHH
Q 006212 192 EHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRA--KGLGMNVIA-HDPYAPADKAR 268 (656)
Q Consensus 192 E~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l--k~~G~~Vi~-~d~~~~~~~a~ 268 (656)
+|.+..++...|++. .|. ..++++|||+|.+|+.+++.+ ...|+++.+ +|+........
T Consensus 65 gy~v~~l~~~~~~~l---------~~~---------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~ 126 (213)
T PRK05472 65 GYNVEELLEFIEKIL---------GLD---------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTK 126 (213)
T ss_pred CeeHHHHHHHHHHHh---------CCC---------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCE
Confidence 477788887777664 122 245899999999999999863 357899887 56543111101
Q ss_pred HcCCe---ecCHHHHhcc--CCEEEEccCCCccc---cccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc
Q 006212 269 AVGVE---LVSFDQALAT--ADFISLHMPLNPTT---SKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 269 ~~g~~---~~~l~ell~~--aDvV~l~~Plt~~T---~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~ 335 (656)
..|+. ..++++++++ .|.|++|+|..... ..+.......-|...++.+|+.+|-+|+.++|..+|..
T Consensus 127 i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l~~ 201 (213)
T PRK05472 127 IGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVELQT 201 (213)
T ss_pred eCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEechHHHHHH
Confidence 11222 1257777765 99999999966531 11121222233566678899999999999998887764
No 143
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.70 E-value=0.00017 Score=73.93 Aligned_cols=104 Identities=19% Similarity=0.282 Sum_probs=67.8
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCC---CE-EEEECCCC--Chh-HHHHcCCee-cCHHHHhccCCEEEEccCCCccccc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLG---MN-VIAHDPYA--PAD-KARAVGVEL-VSFDQALATADFISLHMPLNPTTSK 299 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G---~~-Vi~~d~~~--~~~-~a~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~ 299 (656)
.+++|||||.|+||+.+++.+...| .+ ++++++.. ..+ .....++.. .+++++++++|+|++|+|. ...+.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~-~~~~~ 81 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPP-SAHEE 81 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCH-HHHHH
Confidence 3578999999999999999987654 33 77787642 222 223356654 4788999999999999993 22333
Q ss_pred cccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcC
Q 006212 300 IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (656)
Q Consensus 300 li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g 336 (656)
++. +.-..++ +.+||.++-| ++.+.|.+.+..+
T Consensus 82 v~~-~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~ 114 (245)
T PRK07634 82 LLA-ELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG 114 (245)
T ss_pred HHH-HHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence 332 1111234 5688888755 3555566655543
No 144
>TIGR00720 sda_mono L-serine dehydratase, iron-sulfur-dependent, single chain form. This enzyme is also called serine deaminase and L-serine dehydratase 1. L-serine ammonia-lyase converts serine into pyruvate in the gluconeogenesis pathway from serine. This enzyme is comprised of a single chain in Escherichia coli, Mycobacterium tuberculosis, and several other species, but has separate alpha and beta chains in Bacillus subtilis and related species. The beta and alpha chains are homologous to the N-terminal and C-terminal regions, respectively, but are rather deeply branched in a UPGMA tree. This enzyme requires iron and dithiothreitol for activation in vitro, and is a predicted 4Fe-4S protein. Escherichia coli Pseudomonas aeruginosa have two copies of this protein.
Probab=97.70 E-value=8.6e-05 Score=82.21 Aligned_cols=135 Identities=10% Similarity=0.018 Sum_probs=86.4
Q ss_pred CceEEEEEEeecCCCCCcccccccHHHHHHhhhhhhhccccccc------------hHhHhhccCceEEEEEeec-C-CC
Q 006212 437 GIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVN------------ADFTAKQKGLRISEERVVA-D-SS 502 (656)
Q Consensus 437 ~~k~i~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vN------------A~~iAke~GI~v~~~~~~~-~-~~ 502 (656)
.++++++.++||++ .+.++|++|+|++.||++. ..++++... .+.++.+++|.+.+..... . ..
T Consensus 41 ~~~rv~v~LyGSLA-~TGkGHgTD~Avl~GL~G~-~P~~vd~~~~~~~~~~~~~~~~l~l~~~~~i~f~~~~di~f~~~~ 118 (455)
T TIGR00720 41 QVTRVQVDLYGSLA-LTGKGHLTDIAILMGLAGI-YPNTVDIDTKKGFLHEVLENKVLKLAGQHHVPFDYANDLIFHNKP 118 (455)
T ss_pred CCcEEEEEEEchhh-hcCCCccccHHHHHHhcCC-CCCCcChhhhHHHHHHHHhcCeeecCCCCccccCcccceeeCCCC
Confidence 58999999999999 9999999999999999944 444455553 3344667888876643221 0 11
Q ss_pred CCCCCceEEEEEEecccccceecCCCcE-EEEEEEEEC-CeeEEEEEcceeEEeecCccEEEEEecCCC---CchhhHHh
Q 006212 503 PEFPIDSIQVQLSNVDSKFAAAVSENGE-ISIEGKVKF-GIPHLTRVGSFGVDASLEGNLILCRQVDQP---GMIGKVGN 577 (656)
Q Consensus 503 ~~~~~ntv~i~l~~~~~~~~~~~~~~~~-~~v~Gt~~g-G~~rI~~IdGf~V~~~g~~~~Llv~~~D~P---GvIa~V~~ 577 (656)
...|||+++++..+ .++.. .+.++.|+| |.++.- +.+.-+- .. ..+.| -....+..
T Consensus 119 lp~HPNgm~f~a~d---------~~g~~l~~~t~ySIGGGfI~~~--~~~~~~~-~~-------~~~~p~~f~s~~ell~ 179 (455)
T TIGR00720 119 LPLHENGMTITAFN---------SKNEVLYEETYYSVGGGFIVTE--KHFGSEE-DN-------NVSVAYPFKSAKELLE 179 (455)
T ss_pred CCCCCCeeEEEEEe---------CCCCEEEEEEEEEcCCceeeec--ccccccc-cc-------CCCCCcCCCCHHHHHH
Confidence 23699999999983 33333 478899998 555432 1111100 00 01112 23455777
Q ss_pred hhhcCCccccceEee
Q 006212 578 ILGEHNVNVNFMSVG 592 (656)
Q Consensus 578 iL~~~~INI~~m~v~ 592 (656)
+..+++++|..+-+.
T Consensus 180 ~~~~~~~~i~e~v~~ 194 (455)
T TIGR00720 180 LCQKHGKSISEIALL 194 (455)
T ss_pred HHHHhCCCHHHHHHH
Confidence 777888888877553
No 145
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.68 E-value=0.00013 Score=78.12 Aligned_cols=92 Identities=24% Similarity=0.295 Sum_probs=66.2
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCC-CEEEEECCCCC--hhHHHHcCCeecC---HHHHhccCCEEEEccCCCcccccc
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYAP--ADKARAVGVELVS---FDQALATADFISLHMPLNPTTSKI 300 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G-~~Vi~~d~~~~--~~~a~~~g~~~~~---l~ell~~aDvV~l~~Plt~~T~~l 300 (656)
+.|++|+|||.|.||+.+++.++..| .+|+++|+... .+.+.+.|....+ +.+.+.++|+|+.|+|... ...+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~-~~~~ 254 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPH-YAKI 254 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCc-hHHH
Confidence 68999999999999999999999865 68999998753 2455666765443 5677889999999999443 3222
Q ss_pred ccHHHHhcC-CCCcEEEEcCC
Q 006212 301 FNDETFAKM-KKGVRIVNVAR 320 (656)
Q Consensus 301 i~~~~l~~m-K~gailINvaR 320 (656)
+ ...+... +++.+++|++-
T Consensus 255 ~-~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 255 V-ERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred H-HHHHhhCCCCCeEEEEeCC
Confidence 2 2223222 35778888874
No 146
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.66 E-value=0.00015 Score=75.89 Aligned_cols=101 Identities=14% Similarity=0.244 Sum_probs=65.3
Q ss_pred CEEEEEecChhHHHHHHHHhcC--CCEEE-EECCCCCh--hHHHHcCCe-ecCHHHHhccCCEEEEccCCCccccccccH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL--GMNVI-AHDPYAPA--DKARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~--G~~Vi-~~d~~~~~--~~a~~~g~~-~~~l~ell~~aDvV~l~~Plt~~T~~li~~ 303 (656)
.+|||||+|.||+.+++.+... ++++. ++|++... ..+...+.. +.++++++.++|+|++|+|.. ... +
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~--~~~---~ 76 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVN--AVE---E 76 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChH--HHH---H
Confidence 3799999999999999998864 57754 58887522 222344554 348999999999999999832 221 1
Q ss_pred HHHhcCCCCcEEEEcCCCchhcH---HHHHHhHhc
Q 006212 304 ETFAKMKKGVRIVNVARGGVIDE---EALVRALDS 335 (656)
Q Consensus 304 ~~l~~mK~gailINvaRg~ivde---~aL~~aL~~ 335 (656)
-....|+.|.-++.++-|.+.|. +.|.++.++
T Consensus 77 ~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~ 111 (265)
T PRK13304 77 VVPKSLENGKDVIIMSVGALADKELFLKLYKLAKE 111 (265)
T ss_pred HHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHH
Confidence 12223455555566666666653 345554444
No 147
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=97.66 E-value=0.00034 Score=66.40 Aligned_cols=81 Identities=23% Similarity=0.311 Sum_probs=67.2
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|+|-+. +|+.+|..|...|+.|..++.+. .++++.+++||+|+.+++.. +++
T Consensus 22 ~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t------------~~l~~~v~~ADIVvsAtg~~----~~i 85 (140)
T cd05212 22 EGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT------------IQLQSKVHDADVVVVGSPKP----EKV 85 (140)
T ss_pred cCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC------------cCHHHHHhhCCEEEEecCCC----Ccc
Confidence 47899999999999875 78999999999999999988542 15788899999999999844 457
Q ss_pred cHHHHhcCCCCcEEEEcCCCc
Q 006212 302 NDETFAKMKKGVRIVNVARGG 322 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg~ 322 (656)
+.+. +|||++++|++...
T Consensus 86 ~~~~---ikpGa~Vidvg~~~ 103 (140)
T cd05212 86 PTEW---IKPGATVINCSPTK 103 (140)
T ss_pred CHHH---cCCCCEEEEcCCCc
Confidence 6655 69999999998543
No 148
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.66 E-value=0.00016 Score=77.79 Aligned_cols=85 Identities=18% Similarity=0.299 Sum_probs=63.3
Q ss_pred EEEEecChhHHHHHHHHhc-CCCEEEEECCCCCh---hHHHHcCCee------------------c-CHHHHhccCCEEE
Q 006212 232 LAVMGFGKVGSEVARRAKG-LGMNVIAHDPYAPA---DKARAVGVEL------------------V-SFDQALATADFIS 288 (656)
Q Consensus 232 vGIIGlG~IG~~vA~~lk~-~G~~Vi~~d~~~~~---~~a~~~g~~~------------------~-~l~ell~~aDvV~ 288 (656)
|||+|||+||+.+++.+.. -+|+|++.....+. ..+..+|+.. . ++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 6999999999999999874 47998885432222 2233333211 1 5889999999999
Q ss_pred EccCCCccccccccHHHHhcCCCCcEEEEcC
Q 006212 289 LHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 289 l~~Plt~~T~~li~~~~l~~mK~gailINva 319 (656)
.|+| .+.++.+.+.+.+|+++++|+-.-
T Consensus 81 e~Tp---~~~~~~na~~~~~~GakaVl~~~p 108 (333)
T TIGR01546 81 DATP---GGIGAKNKPLYEKAGVKAIFQGGE 108 (333)
T ss_pred ECCC---CCCChhhHHHHHhCCcCEEEECCC
Confidence 9976 457788999999999999888653
No 149
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.65 E-value=0.00016 Score=76.13 Aligned_cols=79 Identities=18% Similarity=0.283 Sum_probs=65.8
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||.|. +|+.+|..|...|..|..++.+. -++.+.+++||+|+.+++.. +++
T Consensus 153 ~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T------------~~l~~~~~~ADIvi~avG~p----~~v 216 (285)
T PRK10792 153 YGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT------------KNLRHHVRNADLLVVAVGKP----GFI 216 (285)
T ss_pred cCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC------------CCHHHHHhhCCEEEEcCCCc----ccc
Confidence 46789999999999999 99999999999999999987542 15888999999999999622 245
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006212 302 NDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaR 320 (656)
..+ .+|+|+++||+|-
T Consensus 217 ~~~---~vk~gavVIDvGi 232 (285)
T PRK10792 217 PGE---WIKPGAIVIDVGI 232 (285)
T ss_pred cHH---HcCCCcEEEEccc
Confidence 553 4699999999983
No 150
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.63 E-value=0.00013 Score=76.09 Aligned_cols=122 Identities=17% Similarity=0.210 Sum_probs=76.6
Q ss_pred CCEEEEEecChhHHHHHHHHhcCC----CEEEEECCCCChhHHHHcCCee-cCHHHHhccCCEEEEccCCCccccccccH
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLG----MNVIAHDPYAPADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G----~~Vi~~d~~~~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~~ 303 (656)
..+|||||+|+||+++++.+...+ -+++++|++... .++.. .+..+++.+||+|++|+| ...+..++..
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl~~ 76 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN-----TPFVYLQSNEELAKTCDIIVLAVK-PDLAGKVLLE 76 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc-----CCeEEeCChHHHHHhCCEEEEEeC-HHHHHHHHHH
Confidence 358999999999999999998655 359999886421 23333 367788899999999998 4445555532
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcC-CeEEEEeeccCCCCCCCCCccccCCcEEEcCCC
Q 006212 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSG-VVAQAALDVFTEEPPAKDSKLVQHENVTVTPHL 369 (656)
Q Consensus 304 ~~l~~mK~gailINvaRg~ivde~aL~~aL~~g-~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~ 369 (656)
....++++.+|.+++--+ .+.+.+.+... .+. .+-++.| -++....++++|.-
T Consensus 77 -i~~~l~~~~iIS~~aGi~---~~~l~~~~~~~~~vv----r~mPn~p-----~~~g~g~t~i~~~~ 130 (260)
T PTZ00431 77 -IKPYLGSKLLISICGGLN---LKTLEEMVGVEAKIV----RVMPNTP-----SLVGQGSLVFCANN 130 (260)
T ss_pred -HHhhccCCEEEEEeCCcc---HHHHHHHcCCCCeEE----EECCCch-----hHhcceeEEEEeCC
Confidence 223455666666655333 44444434332 221 2333332 35666778888753
No 151
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.63 E-value=0.00021 Score=58.14 Aligned_cols=68 Identities=13% Similarity=0.302 Sum_probs=56.8
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCC-CCHHHHHHHhcCCCccEEEE
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE-PNQDSLKEIGKVPAIEEYTL 629 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~-~~~e~l~~L~~~~~V~~v~~ 629 (656)
|.+...|+||+++++.++|.++++||.++...... ++.+.+.+.++.. ...+++++|+++++|..++.
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~L~~~~~v~~v~~ 71 (72)
T cd04874 3 LSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIER-EGKARIYMELEGVGDIEELVEELRSLPIVREVEI 71 (72)
T ss_pred EEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccC-CCeEEEEEEEeccccHHHHHHHHhCCCCeEEEEe
Confidence 56678999999999999999999999999886443 5667777888876 44589999999999988764
No 152
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.62 E-value=0.00017 Score=80.54 Aligned_cols=91 Identities=23% Similarity=0.356 Sum_probs=67.4
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCCh--hHHHHcCCeec---CHHHHhccCCEEEEccCCCccccc
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPA--DKARAVGVELV---SFDQALATADFISLHMPLNPTTSK 299 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~--~~a~~~g~~~~---~l~ell~~aDvV~l~~Plt~~T~~ 299 (656)
.+.|++++|+|.|.||+.+++.++..|. +|+++++.... ..+...|.... ++.+.+.++|+|+.|+|.. ..
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~---~~ 255 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAP---HP 255 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCC---Cc
Confidence 4788999999999999999999999997 89999987522 24455554433 4566788999999998733 34
Q ss_pred cccHHHHhcC-----CCCcEEEEcC
Q 006212 300 IFNDETFAKM-----KKGVRIVNVA 319 (656)
Q Consensus 300 li~~~~l~~m-----K~gailINva 319 (656)
++..+.++.+ +++.+++|.+
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla 280 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLA 280 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeC
Confidence 5666666543 2456778875
No 153
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.61 E-value=0.00017 Score=80.27 Aligned_cols=92 Identities=25% Similarity=0.346 Sum_probs=69.1
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCC-CEEEEECCCCCh--hHHHHcCCeec---CHHHHhccCCEEEEccCCCccccc
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYAPA--DKARAVGVELV---SFDQALATADFISLHMPLNPTTSK 299 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G-~~Vi~~d~~~~~--~~a~~~g~~~~---~l~ell~~aDvV~l~~Plt~~T~~ 299 (656)
.+.|++++|+|.|.||..+++.|+..| .+|+++|+.... ..+...|.... ++.+.+.++|+|+.|++. +..
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s---~~~ 253 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGA---PHP 253 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCC---CCc
Confidence 478999999999999999999999999 789999987532 24445554333 566788999999999763 345
Q ss_pred cccHHHHhcCC----CCcEEEEcCC
Q 006212 300 IFNDETFAKMK----KGVRIVNVAR 320 (656)
Q Consensus 300 li~~~~l~~mK----~gailINvaR 320 (656)
+++.+.+..+. ...+++|.+.
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~ 278 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAV 278 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCC
Confidence 67877776542 2357888763
No 154
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.60 E-value=0.00013 Score=57.53 Aligned_cols=46 Identities=24% Similarity=0.419 Sum_probs=42.1
Q ss_pred EEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCC
Q 006212 562 LCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE 608 (656)
Q Consensus 562 lv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~ 608 (656)
-+..+|+||.+++++++|+++++||.+|.+.+.. ++.+++.+.+|.
T Consensus 2 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~~ 47 (56)
T cd04889 2 SVFVENKPGRLAEVTEILAEAGINIKAISIAETR-GEFGILRLIFSD 47 (56)
T ss_pred EEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEECC
Confidence 3578999999999999999999999999998775 789999999987
No 155
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.58 E-value=0.00029 Score=74.41 Aligned_cols=107 Identities=18% Similarity=0.169 Sum_probs=72.4
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCe--------------ecCHHHHhccCCEEEEccCCCc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVE--------------LVSFDQALATADFISLHMPLNP 295 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~--------------~~~l~ell~~aDvV~l~~Plt~ 295 (656)
.+|+|||.|.||..+|..|...|.+|..|++....+...+.|.. ..+.++....+|+|++|+|. .
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~-~ 79 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKA-Y 79 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecc-c
Confidence 36999999999999999999889999999982233333444432 12455667899999999993 3
Q ss_pred cccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeE
Q 006212 296 TTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVA 339 (656)
Q Consensus 296 ~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~ 339 (656)
++...+ +.....++++.+|+.+.-| +-.++.+.+.+...++.
T Consensus 80 ~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~ 121 (305)
T PRK12921 80 QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL 121 (305)
T ss_pred CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence 344433 2233345778888877554 33466676666655544
No 156
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.57 E-value=0.00025 Score=74.78 Aligned_cols=79 Identities=19% Similarity=0.319 Sum_probs=66.1
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||.|. +|+.+|..|...|+.|..++... -++.+..++||+|+.++.. .+++
T Consensus 158 ~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T------------~~l~~~~~~ADIvv~AvG~----p~~i 221 (287)
T PRK14176 158 YGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT------------DDLKKYTLDADILVVATGV----KHLI 221 (287)
T ss_pred cCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC------------CCHHHHHhhCCEEEEccCC----cccc
Confidence 46799999999999999 99999999999999999987432 1578889999999998862 2456
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006212 302 NDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaR 320 (656)
..+ .+|+|+++||+|-
T Consensus 222 ~~~---~vk~gavVIDvGi 237 (287)
T PRK14176 222 KAD---MVKEGAVIFDVGI 237 (287)
T ss_pred CHH---HcCCCcEEEEecc
Confidence 655 4699999999984
No 157
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=97.57 E-value=0.00017 Score=70.23 Aligned_cols=94 Identities=26% Similarity=0.400 Sum_probs=68.0
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHcCCe---e--------------------c----CH
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVE---L--------------------V----SF 277 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~g~~---~--------------------~----~l 277 (656)
.+...++.|+|.|+.|..-++.++++|++|..+|.+.. .......+.. . . .|
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 96 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNF 96 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHH
Confidence 56778999999999999999999999999999997752 2233333321 2 1 36
Q ss_pred HHHhccCCEEEEccCC-CccccccccHHHHhcCCCCcEEEEcC
Q 006212 278 DQALATADFISLHMPL-NPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 278 ~ell~~aDvV~l~~Pl-t~~T~~li~~~~l~~mK~gailINva 319 (656)
.+.++.+|+|+.++-. ....-.++.++.++.|||+.+|+|++
T Consensus 97 ~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 97 AEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 6789999999864432 44566789999999999999999996
No 158
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.57 E-value=0.00024 Score=74.89 Aligned_cols=80 Identities=18% Similarity=0.282 Sum_probs=66.6
Q ss_pred cccccCCCEEEEEecC-hhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG-~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||-| .+|+.+|..|...|..|..++... -++.+.+++||+|+.+++ ..+++
T Consensus 151 ~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t------------~~l~~~~~~ADIvV~AvG----~p~~i 214 (285)
T PRK14191 151 YHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT------------KDLSFYTQNADIVCVGVG----KPDLI 214 (285)
T ss_pred hCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc------------HHHHHHHHhCCEEEEecC----CCCcC
Confidence 4679999999999999 899999999999999999885432 136788999999999997 33467
Q ss_pred cHHHHhcCCCCcEEEEcCCC
Q 006212 302 NDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg 321 (656)
..+.+ |+|+++||+|-.
T Consensus 215 ~~~~v---k~GavVIDvGi~ 231 (285)
T PRK14191 215 KASMV---KKGAVVVDIGIN 231 (285)
T ss_pred CHHHc---CCCcEEEEeecc
Confidence 76654 999999999843
No 159
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.56 E-value=0.00019 Score=60.91 Aligned_cols=68 Identities=12% Similarity=0.360 Sum_probs=50.8
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCC--CCH-HHHHHHhcCCCccEEE
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE--PNQ-DSLKEIGKVPAIEEYT 628 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~--~~~-e~l~~L~~~~~V~~v~ 628 (656)
|-+...|+||+++.|++.+++.++||.+++......++.+.+.+.++-. ..- .++++|+++|+|.+|+
T Consensus 9 l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i~~V~~V~ 79 (80)
T PF13291_consen 9 LRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQIPGVISVE 79 (80)
T ss_dssp EEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTSTTEEEEE
T ss_pred EEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCCCCeeEEE
Confidence 4567899999999999999999999999999765446666665554433 222 8899999999998875
No 160
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.55 E-value=0.0002 Score=75.22 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=67.3
Q ss_pred cccccCCCEEEEEecC-hhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG-~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|+|.+ ..|+.+|..+..+|..|..++.+. .++.+.+++||+|+.+++.. +++
T Consensus 146 ~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t------------~~L~~~~~~ADIvI~Avgk~----~lv 209 (279)
T PRK14178 146 YKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT------------ENLKAELRQADILVSAAGKA----GFI 209 (279)
T ss_pred cCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh------------hHHHHHHhhCCEEEECCCcc----ccc
Confidence 4679999999999999 899999999999999998876542 24888999999999999722 567
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006212 302 NDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaR 320 (656)
.++.+ |+|+++||+|-
T Consensus 210 ~~~~v---k~GavVIDVgi 225 (279)
T PRK14178 210 TPDMV---KPGATVIDVGI 225 (279)
T ss_pred CHHHc---CCCcEEEEeec
Confidence 77764 99999999984
No 161
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.55 E-value=0.00051 Score=72.36 Aligned_cols=107 Identities=15% Similarity=0.156 Sum_probs=71.9
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCee------------cCHHHHhccCCEEEEccCCCcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVEL------------VSFDQALATADFISLHMPLNPT 296 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~------------~~l~ell~~aDvV~l~~Plt~~ 296 (656)
.+|+|||.|.||+.+|..|...|.+|..++++. ..+...+.|... .+++++ +.+|+|++++|. .+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~-~~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKA-YQ 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEeccc-cc
Confidence 369999999999999999998899999999854 333334445421 245555 899999999994 34
Q ss_pred ccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEE
Q 006212 297 TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQ 340 (656)
Q Consensus 297 T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~g 340 (656)
+..++ +.....+.+++.||.+.-| +-.++.+.+.+....+.+
T Consensus 79 ~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~ 120 (304)
T PRK06522 79 LPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLG 120 (304)
T ss_pred HHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEE
Confidence 44443 2233346677888877765 323556666565544443
No 162
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.53 E-value=0.0003 Score=74.35 Aligned_cols=80 Identities=19% Similarity=0.277 Sum_probs=65.8
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||.|. .|+++|..|...|.+|..+++.. .++.+.+++||+|+.+++ .+. ++
T Consensus 153 ~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t------------~~L~~~~~~aDIvI~AtG-~~~---~v 216 (283)
T PRK14192 153 YNIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT------------QNLPELVKQADIIVGAVG-KPE---LI 216 (283)
T ss_pred cCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc------------hhHHHHhccCCEEEEccC-CCC---cC
Confidence 46789999999999998 99999999999999999988631 146777899999999997 332 56
Q ss_pred cHHHHhcCCCCcEEEEcCCC
Q 006212 302 NDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg 321 (656)
..+. +|+|++++|++-.
T Consensus 217 ~~~~---lk~gavViDvg~n 233 (283)
T PRK14192 217 KKDW---IKQGAVVVDAGFH 233 (283)
T ss_pred CHHH---cCCCCEEEEEEEe
Confidence 6544 6999999999843
No 163
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.51 E-value=0.0017 Score=66.43 Aligned_cols=153 Identities=20% Similarity=0.205 Sum_probs=100.2
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCC---EEEEECCC----CCh---------hHHHHcCC-ee-cCHHHHhccCC
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGM---NVIAHDPY----APA---------DKARAVGV-EL-VSFDQALATAD 285 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~---~Vi~~d~~----~~~---------~~a~~~g~-~~-~~l~ell~~aD 285 (656)
+..+.++++.|+|.|.+|..+|..|...|+ +|..+|++ ... ..++..+. .. .++.+.++++|
T Consensus 20 g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~d 99 (226)
T cd05311 20 GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGAD 99 (226)
T ss_pred CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCC
Confidence 457889999999999999999999998897 49999987 221 12233221 11 36878889999
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCC-eEEEEeeccCCCCCCCCCccccCCcEE
Q 006212 286 FISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGV-VAQAALDVFTEEPPAKDSKLVQHENVT 364 (656)
Q Consensus 286 vV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~-i~gA~lDV~~~EP~~~~~~L~~~~nvi 364 (656)
+|+-++| .++++.+.++.|+++.++.+.+.- ..|.-+.++.+.|. +..-|. +. ...+..|++
T Consensus 100 vlIgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP--~~e~~~~~A~~~ga~i~a~G~-----~~-----~~~Q~nn~~ 162 (226)
T cd05311 100 VFIGVSR-----PGVVKKEMIKKMAKDPIVFALANP--VPEIWPEEAKEAGADIVATGR-----SD-----FPNQVNNVL 162 (226)
T ss_pred EEEeCCC-----CCCCCHHHHHhhCCCCEEEEeCCC--CCcCCHHHHHHcCCcEEEeCC-----CC-----Cccccceee
Confidence 9999887 467888899999999999998832 23433334444443 333331 21 233567888
Q ss_pred EcCCCCCCcHHH-----HHHHHHHHHHHHHHHHc
Q 006212 365 VTPHLGASTKEA-----QEGVAIEIAEAVVGALR 393 (656)
Q Consensus 365 lTPH~g~~T~ea-----~~~~~~~~~~~i~~~l~ 393 (656)
+-|-+|-....+ -++|-..+++.+.++..
T Consensus 163 ~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~ 196 (226)
T cd05311 163 GFPGIFRGALDVRATKITEEMKLAAAEAIADLAE 196 (226)
T ss_pred ecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCC
Confidence 889876322211 14444555556655544
No 164
>PLN00203 glutamyl-tRNA reductase
Probab=97.50 E-value=0.00023 Score=81.13 Aligned_cols=91 Identities=15% Similarity=0.189 Sum_probs=67.8
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCCh--hHHHHc-CC--ee---cCHHHHhccCCEEEEccCCCcc
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPA--DKARAV-GV--EL---VSFDQALATADFISLHMPLNPT 296 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~--~~a~~~-g~--~~---~~l~ell~~aDvV~l~~Plt~~ 296 (656)
.+.+++|+|||.|.||+.+++.|...|. +|++++++... ..+... +. .+ .++.+.+.++|+|+.|+|.
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s--- 339 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSS--- 339 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCC---
Confidence 4789999999999999999999999997 79999987522 222333 32 22 2566788999999999863
Q ss_pred ccccccHHHHhcCCC-------CcEEEEcC
Q 006212 297 TSKIFNDETFAKMKK-------GVRIVNVA 319 (656)
Q Consensus 297 T~~li~~~~l~~mK~-------gailINva 319 (656)
...++..+.++.+++ ..++||.+
T Consensus 340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLA 369 (519)
T PLN00203 340 ETPLFLKEHVEALPPASDTVGGKRLFVDIS 369 (519)
T ss_pred CCCeeCHHHHHHhhhcccccCCCeEEEEeC
Confidence 355778888877643 24788886
No 165
>PRK08577 hypothetical protein; Provisional
Probab=97.50 E-value=0.001 Score=62.59 Aligned_cols=76 Identities=17% Similarity=0.277 Sum_probs=61.3
Q ss_pred ccEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccE--EEEEEeCCC-C-CHHHHHHHhcCCCccEEEEEeec
Q 006212 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHG--IMAIGVDEE-P-NQDSLKEIGKVPAIEEYTLLHVS 633 (656)
Q Consensus 558 ~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~a--l~~i~~D~~-~-~~e~l~~L~~~~~V~~v~~v~l~ 633 (656)
.+.|-+...|+||+++.|++.|+++++||.+++......++.+ .+.+++++. . -.+++++|+++++|.+++++.++
T Consensus 56 ~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l~~V~~V~~~~~~ 135 (136)
T PRK08577 56 LVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKLEEVKEVEIRQIE 135 (136)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcCCCEEEEEEEEcc
Confidence 4567778999999999999999999999999998655445544 444566654 2 34899999999999999998875
No 166
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.48 E-value=0.0034 Score=71.02 Aligned_cols=132 Identities=18% Similarity=0.184 Sum_probs=79.3
Q ss_pred CEEEEEecChhHHHHHHHHhcC--CCEEEEECCCCChhHHHHc------------------C--Ceec-CHHHHhccCCE
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL--GMNVIAHDPYAPADKARAV------------------G--VELV-SFDQALATADF 286 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~--G~~Vi~~d~~~~~~~a~~~------------------g--~~~~-~l~ell~~aDv 286 (656)
++|+|||+|.+|..+|..+... |++|++||.+...-..... + ..+. ++++.+++||+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 5799999999999999999855 6999999965421111110 1 1222 56778899999
Q ss_pred EEEccCCCcccc------------cccc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEee---ccCCC
Q 006212 287 ISLHMPLNPTTS------------KIFN--DETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALD---VFTEE 349 (656)
Q Consensus 287 V~l~~Plt~~T~------------~li~--~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lD---V~~~E 349 (656)
+++|+| ||... ++.. +..-..++++.++|.-+.-.+=-.+.+.+-+.+.. .| .| +|-+|
T Consensus 82 i~I~V~-TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g--~~f~v~~~PE 157 (473)
T PLN02353 82 VFVSVN-TPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KG--INFQILSNPE 157 (473)
T ss_pred EEEEeC-CCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CC--CCeEEEECCC
Confidence 999998 44321 1111 22344579999999887644433445555554411 01 22 23444
Q ss_pred CCCC---CCccccCCcEEE
Q 006212 350 PPAK---DSKLVQHENVTV 365 (656)
Q Consensus 350 P~~~---~~~L~~~~nvil 365 (656)
=+.. -..++..|++|+
T Consensus 158 rl~~G~a~~d~~~p~riVi 176 (473)
T PLN02353 158 FLAEGTAIEDLFKPDRVLI 176 (473)
T ss_pred ccCCCCcccccCCCCEEEE
Confidence 3322 234666677753
No 167
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.45 E-value=0.00043 Score=72.76 Aligned_cols=79 Identities=15% Similarity=0.289 Sum_probs=65.8
Q ss_pred cccccCCCEEEEEecC-hhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG-~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||-+ .+|+.+|..|...|..|..++.+. -++.+.+++||+|+.++. ..+++
T Consensus 151 ~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T------------~~l~~~~~~ADIvV~AvG----kp~~i 214 (281)
T PRK14183 151 YEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT------------KDLKAHTKKADIVIVGVG----KPNLI 214 (281)
T ss_pred cCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------cCHHHHHhhCCEEEEecC----ccccc
Confidence 4679999999999999 799999999998899999876432 147788999999999997 23467
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006212 302 NDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaR 320 (656)
..+. .|+|+++||+|-
T Consensus 215 ~~~~---vk~gavvIDvGi 230 (281)
T PRK14183 215 TEDM---VKEGAIVIDIGI 230 (281)
T ss_pred CHHH---cCCCcEEEEeec
Confidence 6665 489999999983
No 168
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.38 E-value=0.00062 Score=71.69 Aligned_cols=80 Identities=23% Similarity=0.327 Sum_probs=66.4
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||-+. +|+.+|..|...|..|..++... .++.+.+++||+|+.+++. .+++
T Consensus 151 ~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T------------~~l~~~~~~ADIvI~AvG~----~~~i 214 (284)
T PRK14170 151 TGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT------------KDLPQVAKEADILVVATGL----AKFV 214 (284)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEecCC----cCcc
Confidence 47899999999999986 69999999999999999886432 2478889999999999982 3467
Q ss_pred cHHHHhcCCCCcEEEEcCCC
Q 006212 302 NDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg 321 (656)
..+. .|+|+++||+|--
T Consensus 215 ~~~~---vk~GavVIDvGin 231 (284)
T PRK14170 215 KKDY---IKPGAIVIDVGMD 231 (284)
T ss_pred CHHH---cCCCCEEEEccCc
Confidence 7665 4899999999844
No 169
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.38 E-value=0.00074 Score=71.19 Aligned_cols=82 Identities=17% Similarity=0.276 Sum_probs=67.7
Q ss_pred ccccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCcccccc
Q 006212 222 YVGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKI 300 (656)
Q Consensus 222 ~~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~l 300 (656)
+.+.++.||++.|||-+. +|+.+|..|...|..|..++... .++.+.+++||+|+.+++ ..++
T Consensus 151 ~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t------------~~l~~~~~~ADIvI~AvG----~p~~ 214 (284)
T PRK14190 151 EYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT------------KNLAELTKQADILIVAVG----KPKL 214 (284)
T ss_pred HcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecC----CCCc
Confidence 346799999999999875 79999999999999999886431 258888999999999997 2347
Q ss_pred ccHHHHhcCCCCcEEEEcCCCc
Q 006212 301 FNDETFAKMKKGVRIVNVARGG 322 (656)
Q Consensus 301 i~~~~l~~mK~gailINvaRg~ 322 (656)
++.+.+ |+|+++||+|.-.
T Consensus 215 i~~~~i---k~gavVIDvGi~~ 233 (284)
T PRK14190 215 ITADMV---KEGAVVIDVGVNR 233 (284)
T ss_pred CCHHHc---CCCCEEEEeeccc
Confidence 877765 8999999998544
No 170
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.38 E-value=0.0035 Score=67.02 Aligned_cols=108 Identities=12% Similarity=0.162 Sum_probs=72.3
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCee--------------cCHHHHhccCCEEEEccCCCc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL--------------VSFDQALATADFISLHMPLNP 295 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~--------------~~l~ell~~aDvV~l~~Plt~ 295 (656)
++|+|||.|.||..+|.+|...|.+|..+.+.. .+.....|... .+..+.+..+|+|++|+|..
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~- 83 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD-YEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTT- 83 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC-HHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCC-
Confidence 589999999999999999999999999887754 33333334321 11223467899999999944
Q ss_pred cccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEE
Q 006212 296 TTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQA 341 (656)
Q Consensus 296 ~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA 341 (656)
++...+ ......+++++.++...-| +-.++.+.+.+...++.++
T Consensus 84 ~~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g 127 (313)
T PRK06249 84 ANALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGG 127 (313)
T ss_pred ChHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEE
Confidence 344333 2233346778888877655 3356777777766665553
No 171
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.38 E-value=0.00066 Score=71.97 Aligned_cols=81 Identities=19% Similarity=0.219 Sum_probs=66.8
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||-+. +|+.+|..|...|+.|..+.... -++.+.+++||+|+.+++. .+++
T Consensus 152 ~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T------------~~l~~~~~~ADIvIsAvGk----p~~i 215 (297)
T PRK14186 152 QQIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT------------QDLASITREADILVAAAGR----PNLI 215 (297)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 47799999999999886 79999999999999999886432 1578889999999999982 3467
Q ss_pred cHHHHhcCCCCcEEEEcCCCc
Q 006212 302 NDETFAKMKKGVRIVNVARGG 322 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg~ 322 (656)
..+. .|+|+++||+|--.
T Consensus 216 ~~~~---ik~gavVIDvGin~ 233 (297)
T PRK14186 216 GAEM---VKPGAVVVDVGIHR 233 (297)
T ss_pred CHHH---cCCCCEEEEecccc
Confidence 7665 48999999998443
No 172
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.37 E-value=0.0015 Score=77.50 Aligned_cols=128 Identities=20% Similarity=0.266 Sum_probs=85.7
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHH-----------HHcC-------------Ceec-CHHHHhcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKA-----------RAVG-------------VELV-SFDQALAT 283 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a-----------~~~g-------------~~~~-~l~ell~~ 283 (656)
++|+|||.|.||..||..+...|++|..||+... .+.+ .+.| +... ++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 5899999999999999999988999999998752 1111 1111 1222 45 44799
Q ss_pred CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc-CCeEEEEeeccCCCCCCCCCccccCCc
Q 006212 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFTEEPPAKDSKLVQHEN 362 (656)
Q Consensus 284 aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~-g~i~gA~lDV~~~EP~~~~~~L~~~~n 362 (656)
||+|+=++|-..+.+.-+-.+.-..++++++|....++= ....|.+.+.. .++ .+++.|. |+ ..-||.|
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl--~i~~la~~~~~p~r~--~g~Hff~--P~-~~~~lVE--- 462 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTI--SISLLAKALKRPENF--CGMHFFN--PV-HRMPLVE--- 462 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCC--CHHHHHhhcCCCccE--EEEecCC--cc-cccceEE---
Confidence 999999999888777766566666689998886655443 34445555543 355 5666653 32 2346664
Q ss_pred EEEcCC
Q 006212 363 VTVTPH 368 (656)
Q Consensus 363 vilTPH 368 (656)
||-.||
T Consensus 463 vv~g~~ 468 (715)
T PRK11730 463 VIRGEK 468 (715)
T ss_pred eeCCCC
Confidence 555554
No 173
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=97.37 E-value=0.00075 Score=58.21 Aligned_cols=75 Identities=12% Similarity=0.163 Sum_probs=61.2
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeC-CC--CCHHHHHHHhcCCCccEEEEEeec
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVD-EE--PNQDSLKEIGKVPAIEEYTLLHVS 633 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D-~~--~~~e~l~~L~~~~~V~~v~~v~l~ 633 (656)
++|-+...|+||++++|++++...|+||..+.++..+..+-.=|.|.++ .. .=+.+.++|.++..|.+|.-++|.
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~KlidVikV~~~~~~ 80 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTVECYDLV 80 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhCCccEEEEEEeecc
Confidence 5677788899999999999999999999999999877666666666664 22 224788889999999999888773
No 174
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.35 E-value=0.00061 Score=71.76 Aligned_cols=96 Identities=20% Similarity=0.298 Sum_probs=62.6
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCC-CEEEEECCCCCh--hHHHHcC----Cee-cCHHHHhccCCEEEEccCCCc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYAPA--DKARAVG----VEL-VSFDQALATADFISLHMPLNP 295 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G-~~Vi~~d~~~~~--~~a~~~g----~~~-~~l~ell~~aDvV~l~~Plt~ 295 (656)
+..+.+|++.|+|.|.+|+.++..|...| .+|.+++++... ..+...+ +.+ .++.+.+.++|+|+.++|...
T Consensus 118 ~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~ 197 (278)
T PRK00258 118 GVDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGM 197 (278)
T ss_pred CCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCC
Confidence 34678999999999999999999999999 799999987522 1222222 122 234567789999999999653
Q ss_pred cccccccHHHHhcCCCCcEEEEcC
Q 006212 296 TTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 296 ~T~~li~~~~l~~mK~gailINva 319 (656)
....-.....+..++++.+++|+.
T Consensus 198 ~~~~~~~~~~~~~l~~~~~v~Div 221 (278)
T PRK00258 198 SGELPLPPLPLSLLRPGTIVYDMI 221 (278)
T ss_pred CCCCCCCCCCHHHcCCCCEEEEee
Confidence 211000111123345666666664
No 175
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.35 E-value=0.00076 Score=71.02 Aligned_cols=79 Identities=16% Similarity=0.302 Sum_probs=65.8
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||-+. +|+.+|..|...|..|..+.... -++.+..++||+|+.+++. .+++
T Consensus 150 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T------------~~l~~~~~~ADIvI~AvG~----p~~i 213 (282)
T PRK14169 150 YDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT------------RNLKQLTKEADILVVAVGV----PHFI 213 (282)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC------------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 47799999999999986 79999999999999999886432 1478889999999999982 3467
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006212 302 NDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaR 320 (656)
+.+. +|+|+++||+|-
T Consensus 214 ~~~~---vk~GavVIDvGi 229 (282)
T PRK14169 214 GADA---VKPGAVVIDVGI 229 (282)
T ss_pred CHHH---cCCCcEEEEeec
Confidence 7665 599999999984
No 176
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=97.33 E-value=0.002 Score=76.44 Aligned_cols=128 Identities=19% Similarity=0.260 Sum_probs=85.2
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHH-----------HHcC-------------Cee-cCHHHHhcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKA-----------RAVG-------------VEL-VSFDQALAT 283 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a-----------~~~g-------------~~~-~~l~ell~~ 283 (656)
++|+|||.|.||..+|..+...|++|..||+... .+.+ .+.| +.. .++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 5799999999999999999988999999998752 1111 1111 112 244 45799
Q ss_pred CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc-CCeEEEEeeccCCCCCCCCCccccCCc
Q 006212 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFTEEPPAKDSKLVQHEN 362 (656)
Q Consensus 284 aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~-g~i~gA~lDV~~~EP~~~~~~L~~~~n 362 (656)
||+|+=++|-..+.+.-+-.+.-+.++++++|-...++= +..++...++. .++ .|++.|. |+ ..-||.|
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l--~i~~ia~~~~~p~r~--ig~Hff~--P~-~~~~lvE--- 462 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTI--SISLLAKALKRPENF--CGMHFFN--PV-HRMPLVE--- 462 (714)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCC--CHHHHHhhcCCcccE--EEEecCC--Cc-ccCceEe---
Confidence 999999999887776655555556689998886654443 34455555543 455 5667663 32 2346765
Q ss_pred EEEcCC
Q 006212 363 VTVTPH 368 (656)
Q Consensus 363 vilTPH 368 (656)
||-+++
T Consensus 463 vv~g~~ 468 (714)
T TIGR02437 463 VIRGEK 468 (714)
T ss_pred ecCCCC
Confidence 554444
No 177
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.33 E-value=0.00081 Score=70.86 Aligned_cols=79 Identities=15% Similarity=0.262 Sum_probs=66.0
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||-+. +|+.+|..|...|+.|..++... -++.+..++||+|+.+++ ..+++
T Consensus 153 y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T------------~~l~~~~~~ADIvIsAvG----k~~~i 216 (284)
T PRK14177 153 YGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT------------QNLPSIVRQADIIVGAVG----KPEFI 216 (284)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEeCC----CcCcc
Confidence 46799999999999985 79999999999999999987542 157888999999999998 23467
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006212 302 NDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaR 320 (656)
..+. .|+|+++||+|-
T Consensus 217 ~~~~---ik~gavVIDvGi 232 (284)
T PRK14177 217 KADW---ISEGAVLLDAGY 232 (284)
T ss_pred CHHH---cCCCCEEEEecC
Confidence 7655 489999999983
No 178
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.32 E-value=0.00081 Score=70.82 Aligned_cols=78 Identities=22% Similarity=0.308 Sum_probs=65.7
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||-+. +|+.+|..|...|..|..++.+. -++.+..++||+|+.++.. .+++
T Consensus 151 y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T------------~nl~~~~~~ADIvIsAvGk----p~~i 214 (282)
T PRK14166 151 YEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT------------KDLSLYTRQADLIIVAAGC----VNLL 214 (282)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEcCCC----cCcc
Confidence 47799999999999986 79999999998899999887542 2488889999999999982 3467
Q ss_pred cHHHHhcCCCCcEEEEcC
Q 006212 302 NDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 302 ~~~~l~~mK~gailINva 319 (656)
..+. .|+|+++||+|
T Consensus 215 ~~~~---vk~GavVIDvG 229 (282)
T PRK14166 215 RSDM---VKEGVIVVDVG 229 (282)
T ss_pred CHHH---cCCCCEEEEec
Confidence 7665 48999999998
No 179
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=97.31 E-value=0.00061 Score=55.74 Aligned_cols=58 Identities=21% Similarity=0.369 Sum_probs=46.7
Q ss_pred EEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHHhcC
Q 006212 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKV 621 (656)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L~~~ 621 (656)
-+.+..+|+||.+++|+.+|+++|+||.+|.+....+ .+++++.+|. ++.+.+.|++.
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~--~~~~rl~~~~--~~~~~~~L~~~ 60 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSE--FGILRLIVSD--PDKAKEALKEA 60 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCC--CCEEEEEECC--HHHHHHHHHHC
Confidence 4567899999999999999999999999999876543 5888888855 35677777653
No 180
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.30 E-value=0.0011 Score=55.26 Aligned_cols=70 Identities=19% Similarity=0.286 Sum_probs=54.2
Q ss_pred EEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeC--CCC-C-HHHHHHHhcCCCccEEEEE
Q 006212 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVD--EEP-N-QDSLKEIGKVPAIEEYTLL 630 (656)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D--~~~-~-~e~l~~L~~~~~V~~v~~v 630 (656)
.|.+...|+||.++.|.+.|+++++||..+..... .++.+-+.+.++ +.. . .+++++|+++|+|.+|+++
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~-~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~~ 75 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIP-IHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVELV 75 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCC-CCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEEe
Confidence 35678899999999999999999999999987432 234555555554 332 1 3899999999999999875
No 181
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.30 E-value=0.0006 Score=54.81 Aligned_cols=59 Identities=14% Similarity=0.314 Sum_probs=48.7
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHHhcC
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKV 621 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L~~~ 621 (656)
+-+..+|+||.++++.++|+++|+||.++........+.+...+.++. .+.+++.|++.
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~--~~~~~~~L~~~ 60 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED--IEKAIEVLQER 60 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC--HHHHHHHHHHC
Confidence 346789999999999999999999999998866554567888888887 56788887763
No 182
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.30 E-value=0.00094 Score=70.50 Aligned_cols=81 Identities=20% Similarity=0.293 Sum_probs=66.8
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||-+. +|+.+|..|...|..|..+.... -++.+..++||+|+.++. . .+++
T Consensus 149 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T------------~~l~~~~~~ADIvIsAvG-k---p~~i 212 (287)
T PRK14173 149 YGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT------------QDLPAVTRRADVLVVAVG-R---PHLI 212 (287)
T ss_pred cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEecC-C---cCcc
Confidence 46799999999999875 79999999999999999876442 147888999999999998 2 3567
Q ss_pred cHHHHhcCCCCcEEEEcCCCc
Q 006212 302 NDETFAKMKKGVRIVNVARGG 322 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg~ 322 (656)
..+.+ |+|+++||+|--.
T Consensus 213 ~~~~v---k~GavVIDVGin~ 230 (287)
T PRK14173 213 TPEMV---RPGAVVVDVGINR 230 (287)
T ss_pred CHHHc---CCCCEEEEccCcc
Confidence 76654 9999999998544
No 183
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.29 E-value=0.00094 Score=70.69 Aligned_cols=79 Identities=19% Similarity=0.247 Sum_probs=66.1
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||-+. +|+.+|..|...|..|..++... -++.+.+++||+|+.+++. .+++
T Consensus 154 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T------------~~l~~~~~~ADIvVsAvGk----p~~i 217 (294)
T PRK14187 154 ITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT------------RDLADYCSKADILVAAVGI----PNFV 217 (294)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 46789999999999986 79999999999999999887542 2478889999999999982 3467
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006212 302 NDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaR 320 (656)
..+.+ |+|+++||+|-
T Consensus 218 ~~~~i---k~gaiVIDVGi 233 (294)
T PRK14187 218 KYSWI---KKGAIVIDVGI 233 (294)
T ss_pred CHHHc---CCCCEEEEecc
Confidence 76654 89999999984
No 184
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=97.28 E-value=0.00092 Score=60.21 Aligned_cols=79 Identities=24% Similarity=0.304 Sum_probs=57.7
Q ss_pred hHHHHHHHHhcCCCEEEEECCCCChhHHHH----cCCeec-CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcE
Q 006212 240 VGSEVARRAKGLGMNVIAHDPYAPADKARA----VGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVR 314 (656)
Q Consensus 240 IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~----~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gai 314 (656)
-+..+++.|+..|++|.+|||+........ .+++.. ++++.++.+|+|+++++ .++-..+--......|+++.+
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~-h~~f~~l~~~~~~~~~~~~~~ 96 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATD-HDEFRELDWEEIAKLMRKPPV 96 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS---GGGGCCGHHHHHHHSCSSEE
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEec-CHHHhccCHHHHHHhcCCCCE
Confidence 456789999999999999999986655555 467665 79999999999999998 444444333445566889999
Q ss_pred EEEcC
Q 006212 315 IVNVA 319 (656)
Q Consensus 315 lINva 319 (656)
|+|+-
T Consensus 97 iiD~~ 101 (106)
T PF03720_consen 97 IIDGR 101 (106)
T ss_dssp EEESS
T ss_pred EEECc
Confidence 99983
No 185
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=97.27 E-value=0.00099 Score=70.66 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=66.4
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||-+. +|+.+|..|...|..|..++... -++++.+++||+|+.++.. .+++
T Consensus 161 ~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T------------~nl~~~~~~ADIvv~AvGk----~~~i 224 (299)
T PLN02516 161 SGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT------------PDPESIVREADIVIAAAGQ----AMMI 224 (299)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEcCCC----cCcc
Confidence 46799999999999986 69999999999999999986532 1478889999999999973 3677
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006212 302 NDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaR 320 (656)
..+. .|+|+++||+|-
T Consensus 225 ~~~~---vk~gavVIDvGi 240 (299)
T PLN02516 225 KGDW---IKPGAAVIDVGT 240 (299)
T ss_pred CHHH---cCCCCEEEEeec
Confidence 7766 489999999984
No 186
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.27 E-value=0.00097 Score=70.24 Aligned_cols=79 Identities=16% Similarity=0.299 Sum_probs=65.6
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||-+. +|+.+|..|...|..|..++... -++.+..++||+|+.+++. .+++
T Consensus 152 y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T------------~dl~~~~k~ADIvIsAvGk----p~~i 215 (282)
T PRK14180 152 YGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT------------TDLKSHTTKADILIVAVGK----PNFI 215 (282)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC------------CCHHHHhhhcCEEEEccCC----cCcC
Confidence 47799999999999885 79999999999999999886542 1577889999999999982 3457
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006212 302 NDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaR 320 (656)
..+. .|+|+++||+|-
T Consensus 216 ~~~~---vk~gavVIDvGi 231 (282)
T PRK14180 216 TADM---VKEGAVVIDVGI 231 (282)
T ss_pred CHHH---cCCCcEEEEecc
Confidence 7655 589999999983
No 187
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.27 E-value=0.0008 Score=55.48 Aligned_cols=62 Identities=18% Similarity=0.315 Sum_probs=52.8
Q ss_pred EEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHHhcC
Q 006212 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKV 621 (656)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L~~~ 621 (656)
.+-+..+|+||.++++..+|+++++||..+...+....+.+.+.+.++....+++.+.|++.
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~~~ 64 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLRRA 64 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHHHC
Confidence 35567899999999999999999999999988776667788899999876666888888874
No 188
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.26 E-value=0.0011 Score=69.79 Aligned_cols=78 Identities=21% Similarity=0.361 Sum_probs=65.5
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||-+. +|+.+|..|...|+.|..++... -++.+..++||+|+.+++. .+++
T Consensus 152 ~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T------------~~l~~~~~~ADIvIsAvGk----p~~i 215 (278)
T PRK14172 152 LNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT------------KNLKEVCKKADILVVAIGR----PKFI 215 (278)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEcCCC----cCcc
Confidence 46799999999999875 79999999999999999887432 1578889999999999983 3467
Q ss_pred cHHHHhcCCCCcEEEEcC
Q 006212 302 NDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 302 ~~~~l~~mK~gailINva 319 (656)
..+. .|+|+++||+|
T Consensus 216 ~~~~---ik~gavVIDvG 230 (278)
T PRK14172 216 DEEY---VKEGAIVIDVG 230 (278)
T ss_pred CHHH---cCCCcEEEEee
Confidence 7665 59999999997
No 189
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.26 E-value=0.0021 Score=69.58 Aligned_cols=97 Identities=24% Similarity=0.369 Sum_probs=70.3
Q ss_pred cccccCCCEEEEEec-ChhHHHHHHHHh-cCC-CEEEEECCCCC-h-hHHHHcC-CeecCHHHHhccCCEEEEccCCCcc
Q 006212 223 VGVSLVGKTLAVMGF-GKVGSEVARRAK-GLG-MNVIAHDPYAP-A-DKARAVG-VELVSFDQALATADFISLHMPLNPT 296 (656)
Q Consensus 223 ~g~~l~gktvGIIGl-G~IG~~vA~~lk-~~G-~~Vi~~d~~~~-~-~~a~~~g-~~~~~l~ell~~aDvV~l~~Plt~~ 296 (656)
.+.++.||++.|+|. |.||+.+++.|. ..| .+++.+++... . ..+.+.+ ....++++.+.++|+|+.++-..
T Consensus 149 lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~-- 226 (340)
T PRK14982 149 LGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMP-- 226 (340)
T ss_pred hccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCC--
Confidence 456799999999998 899999999997 456 58888887642 2 1222332 23457889999999998766422
Q ss_pred ccc-cccHHHHhcCCCCcEEEEcCCCchhc
Q 006212 297 TSK-IFNDETFAKMKKGVRIVNVARGGVID 325 (656)
Q Consensus 297 T~~-li~~~~l~~mK~gailINvaRg~ivd 325 (656)
.. .++.+. ++++++++|.|+-.=||
T Consensus 227 -~~~~I~~~~---l~~~~~viDiAvPRDVd 252 (340)
T PRK14982 227 -KGVEIDPET---LKKPCLMIDGGYPKNLD 252 (340)
T ss_pred -cCCcCCHHH---hCCCeEEEEecCCCCCC
Confidence 23 366654 58999999999865444
No 190
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=97.26 E-value=0.001 Score=58.74 Aligned_cols=79 Identities=10% Similarity=0.132 Sum_probs=61.9
Q ss_pred cCccEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCC-CCCHHHHHHHhcCCCccEEEEEeecc
Q 006212 556 LEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE-EPNQDSLKEIGKVPAIEEYTLLHVSY 634 (656)
Q Consensus 556 g~~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~-~~~~e~l~~L~~~~~V~~v~~v~l~~ 634 (656)
...++|-+...|+||++++|+.+++..|+||..+.++..+..+.+=|.|.+.+ ..=+.+.++|.++..|.+|..+.-+.
T Consensus 6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~~~~i~Qi~kQL~KLidVikV~~l~~~~ 85 (96)
T PRK08178 6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVNDDQRLEQMISQIEKLEDVLKVRRNQSDP 85 (96)
T ss_pred CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcCchHHHHHHHHHhCCcCEEEEEECCCch
Confidence 34678888889999999999999999999999999998776665555555543 22337788888898988888776444
No 191
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.26 E-value=0.00091 Score=55.20 Aligned_cols=70 Identities=20% Similarity=0.287 Sum_probs=52.8
Q ss_pred EEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCC---CCHHHHHHHhcCCCccEEEE
Q 006212 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE---PNQDSLKEIGKVPAIEEYTL 629 (656)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~---~~~e~l~~L~~~~~V~~v~~ 629 (656)
-|-+...|+||.++.+++.|+++++||.+|.......++.+.+.+.++.. .-++++++|+++++|.++..
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~i~~L~~~~~V~~~~~ 74 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEALDAVQGVPS 74 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCHHHHHHHHHHHHcCccccCCce
Confidence 35567789999999999999999999999987543333667666655433 22368899999999877543
No 192
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.26 E-value=0.0012 Score=71.27 Aligned_cols=86 Identities=14% Similarity=0.171 Sum_probs=63.6
Q ss_pred CCEEEEEecChhHHHHHHHHhc-C-CCEEEEECCCCCh-hH----HHHcCCe---ecCHHHHhccCCEEEEccCCCcccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKG-L-GMNVIAHDPYAPA-DK----ARAVGVE---LVSFDQALATADFISLHMPLNPTTS 298 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~-~-G~~Vi~~d~~~~~-~~----a~~~g~~---~~~l~ell~~aDvV~l~~Plt~~T~ 298 (656)
-+++||||.|.+|+..++.+.. + .-+|.+||++... +. ..+.|+. ..+.++++++||+|++|+|.. .
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~---~ 204 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR---K 204 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC---C
Confidence 4789999999999998777653 2 4689999998632 21 1234532 348999999999999999843 4
Q ss_pred ccccHHHHhcCCCCcEEEEcCC
Q 006212 299 KIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINvaR 320 (656)
.++..+. +|||+.+..+|.
T Consensus 205 P~~~~~~---l~~g~~v~~vGs 223 (325)
T TIGR02371 205 PVVKADW---VSEGTHINAIGA 223 (325)
T ss_pred cEecHHH---cCCCCEEEecCC
Confidence 5565543 599999999874
No 193
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.25 E-value=0.0027 Score=75.33 Aligned_cols=129 Identities=14% Similarity=0.141 Sum_probs=84.4
Q ss_pred CEEEEEecChhHHHHHHHHh-cCCCEEEEECCCCC-hhHH-----------HHcC-------------Ceec-CHHHHhc
Q 006212 230 KTLAVMGFGKVGSEVARRAK-GLGMNVIAHDPYAP-ADKA-----------RAVG-------------VELV-SFDQALA 282 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk-~~G~~Vi~~d~~~~-~~~a-----------~~~g-------------~~~~-~l~ell~ 282 (656)
++|+|||.|.||..+|..+. ..|++|..||+... .+.+ .+.| +... ++ +.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence 58999999999999999887 57999999998742 1111 1111 1222 45 4679
Q ss_pred cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc-CCeEEEEeeccCCCCCCCCCccccCC
Q 006212 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFTEEPPAKDSKLVQHE 361 (656)
Q Consensus 283 ~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~-g~i~gA~lDV~~~EP~~~~~~L~~~~ 361 (656)
+||+|+=++|...+.+.-+-.+.-..++++++|....++= ....+.+.++. .++ .+++.|. |+ ..-||.|
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l--~i~~la~~~~~p~r~--~g~Hffn--P~-~~~~lVE-- 454 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSL--PIGQIAAAASRPENV--IGLHYFS--PV-EKMPLVE-- 454 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCC--CHHHHHHhcCCcccE--EEEecCC--cc-ccCceEE--
Confidence 9999999999887777665555556689988876554443 33444445543 455 5666653 32 2346665
Q ss_pred cEEEcCCC
Q 006212 362 NVTVTPHL 369 (656)
Q Consensus 362 nvilTPH~ 369 (656)
||-+|+.
T Consensus 455 -vv~g~~T 461 (699)
T TIGR02440 455 -VIPHAGT 461 (699)
T ss_pred -EeCCCCC
Confidence 5555553
No 194
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.25 E-value=0.0011 Score=69.77 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=66.3
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||-+. +|+++|..|...|..|..++.+. -++.+..++||+|+.+++. .+++
T Consensus 151 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T------------~nl~~~~~~ADIvI~AvGk----~~~i 214 (282)
T PRK14182 151 ARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT------------ADLAGEVGRADILVAAIGK----AELV 214 (282)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEecCC----cCcc
Confidence 46789999999999986 79999999998899999886542 1477889999999999982 4567
Q ss_pred cHHHHhcCCCCcEEEEcCCC
Q 006212 302 NDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg 321 (656)
..+.+ |+|+++||+|-.
T Consensus 215 ~~~~i---k~gaiVIDvGin 231 (282)
T PRK14182 215 KGAWV---KEGAVVIDVGMN 231 (282)
T ss_pred CHHHc---CCCCEEEEeece
Confidence 76654 899999999843
No 195
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.24 E-value=0.0021 Score=65.92 Aligned_cols=34 Identities=41% Similarity=0.672 Sum_probs=31.6
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCCEEEEE
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH 258 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~ 258 (656)
.++.|+++.|.|+|.+|+.+|+.|..+|++|++.
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v 60 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAV 60 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 5789999999999999999999999999999953
No 196
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.23 E-value=0.0012 Score=69.70 Aligned_cols=80 Identities=21% Similarity=0.299 Sum_probs=65.5
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcC----CCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGL----GMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTT 297 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~----G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T 297 (656)
.+.++.||++.|||-+. +|+.+|..|... +..|..+.... -++.+.+++||+|+.+++.
T Consensus 147 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T------------~~l~~~~~~ADIvV~AvG~---- 210 (287)
T PRK14181 147 YEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS------------ENLTEILKTADIIIAAIGV---- 210 (287)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----
Confidence 46799999999999986 799999999877 78999876432 1588889999999999982
Q ss_pred cccccHHHHhcCCCCcEEEEcCCC
Q 006212 298 SKIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINvaRg 321 (656)
.+++..+. .|+|+++||+|--
T Consensus 211 p~~i~~~~---ik~GavVIDvGin 231 (287)
T PRK14181 211 PLFIKEEM---IAEKAVIVDVGTS 231 (287)
T ss_pred cCccCHHH---cCCCCEEEEeccc
Confidence 35677665 4899999999843
No 197
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.23 E-value=0.0025 Score=75.96 Aligned_cols=129 Identities=16% Similarity=0.233 Sum_probs=86.0
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHH-----------HHcC-------------Cee-cCHHHHhcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKA-----------RAVG-------------VEL-VSFDQALAT 283 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a-----------~~~g-------------~~~-~~l~ell~~ 283 (656)
++|+|||.|.||..+|..+...|++|+.||+... .+.+ .+.| +.. .+++ .+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 5899999999999999999988999999998742 1111 1111 122 2454 5799
Q ss_pred CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc-CCeEEEEeeccCCCCCCCCCccccCCc
Q 006212 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFTEEPPAKDSKLVQHEN 362 (656)
Q Consensus 284 aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~-g~i~gA~lDV~~~EP~~~~~~L~~~~n 362 (656)
||+|+=++|...+.+.-+-.+.=+.++++++|....++ ++..++...++. .++ .|++.|. |+ ..-||.|
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~p~r~--ig~Hff~--P~-~~m~LvE--- 484 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSA--LPIKDIAAVSSRPEKV--IGMHYFS--PV-DKMQLLE--- 484 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCCccce--EEEeccC--Cc-ccCceEE---
Confidence 99999999988777766656666678999887644333 234455555544 345 6667664 32 2346765
Q ss_pred EEEcCCC
Q 006212 363 VTVTPHL 369 (656)
Q Consensus 363 vilTPH~ 369 (656)
||-+|+.
T Consensus 485 vv~g~~T 491 (737)
T TIGR02441 485 IITHDGT 491 (737)
T ss_pred EeCCCCC
Confidence 6666653
No 198
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=97.23 E-value=0.0016 Score=55.42 Aligned_cols=72 Identities=10% Similarity=0.123 Sum_probs=58.0
Q ss_pred ccEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCC-CHHHHHHHhcCCCccEEEE
Q 006212 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEP-NQDSLKEIGKVPAIEEYTL 629 (656)
Q Consensus 558 ~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~-~~e~l~~L~~~~~V~~v~~ 629 (656)
.|.|-+...++||++++|+.++...|.||..|.++..+..+..=+.+.++++- =+.+.++|.++.+|.+|.+
T Consensus 3 ~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~~~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 3 QHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVASERPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred eEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECCCchHHHHHHHHhcCcCeEEEEE
Confidence 36777788899999999999999999999999999876666666666665433 3378888899988888764
No 199
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.23 E-value=0.0011 Score=69.93 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=65.3
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||-+. +|+.+|..|...|+.|..++... .++.+..++||+|+.++. . .+++
T Consensus 153 y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T------------~~L~~~~~~ADIvV~AvG-k---p~~i 216 (288)
T PRK14171 153 YEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT------------HNLSSITSKADIVVAAIG-S---PLKL 216 (288)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccC-C---CCcc
Confidence 46789999999999986 79999999998999999876432 247888999999999998 2 3577
Q ss_pred cHHHHhcCCCCcEEEEcC
Q 006212 302 NDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 302 ~~~~l~~mK~gailINva 319 (656)
..+. .|+|+++||+|
T Consensus 217 ~~~~---vk~GavVIDvG 231 (288)
T PRK14171 217 TAEY---FNPESIVIDVG 231 (288)
T ss_pred CHHH---cCCCCEEEEee
Confidence 7665 48999999998
No 200
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.22 E-value=0.0011 Score=71.69 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=65.9
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||-+. +|+.+|..|...|..|..+.... -++.+.+++||+|+.++. ..+++
T Consensus 225 y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T------------~nl~~~~r~ADIVIsAvG----kp~~i 288 (364)
T PLN02616 225 YNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT------------KNPEEITREADIIISAVG----QPNMV 288 (364)
T ss_pred hCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC------------CCHHHHHhhCCEEEEcCC----CcCcC
Confidence 46789999999999886 79999999999999999886432 257888999999999998 23467
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006212 302 NDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaR 320 (656)
..+. .|+|+++||+|-
T Consensus 289 ~~d~---vK~GAvVIDVGI 304 (364)
T PLN02616 289 RGSW---IKPGAVVIDVGI 304 (364)
T ss_pred CHHH---cCCCCEEEeccc
Confidence 7665 499999999983
No 201
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.21 E-value=0.028 Score=62.98 Aligned_cols=67 Identities=15% Similarity=0.238 Sum_probs=45.6
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCH---HHHHHHhcCCCccE
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQ---DSLKEIGKVPAIEE 626 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~---e~l~~L~~~~~V~~ 626 (656)
|.|-+...|+||++++|+.+|++++|||..+...... ++.+=+++-++..... +++++|.+++.|..
T Consensus 349 yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~-~~~~~ivivT~~~~e~~l~~~i~~L~~l~~V~~ 418 (426)
T PRK06349 349 YYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAG-GEGAEIVIVTHETSEAALRAALAAIEALDVVLG 418 (426)
T ss_pred EEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCC-CCceeEEEEEEeCCHHHHHHHHHHHhcCccccc
Confidence 5566667899999999999999999999988765332 2334333444432223 55677777776654
No 202
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.21 E-value=0.0011 Score=71.38 Aligned_cols=79 Identities=19% Similarity=0.299 Sum_probs=65.8
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||-+. +|+.+|..|...|..|..+.... -++.+..++||+|+.+++. .+++
T Consensus 208 ~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T------------~nl~~~~~~ADIvIsAvGk----p~~v 271 (345)
T PLN02897 208 SGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT------------KDPEQITRKADIVIAAAGI----PNLV 271 (345)
T ss_pred hCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC------------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 47899999999999986 69999999999999998876432 1478889999999999982 3467
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006212 302 NDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaR 320 (656)
..+. .|+|+++||+|-
T Consensus 272 ~~d~---vk~GavVIDVGi 287 (345)
T PLN02897 272 RGSW---LKPGAVVIDVGT 287 (345)
T ss_pred CHHH---cCCCCEEEEccc
Confidence 7665 489999999984
No 203
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.20 E-value=0.0022 Score=63.60 Aligned_cols=97 Identities=21% Similarity=0.103 Sum_probs=65.3
Q ss_pred ccccCCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCCCh-h-HHHHc----CCe-----ecC---HHHHhccCCEEE
Q 006212 224 GVSLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAPA-D-KARAV----GVE-----LVS---FDQALATADFIS 288 (656)
Q Consensus 224 g~~l~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~~~-~-~a~~~----g~~-----~~~---l~ell~~aDvV~ 288 (656)
|..+.++++.|+|. |.+|+.+++.+...|.+|..++++... + ..... +.. ..+ +.+.++++|+|+
T Consensus 23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi 102 (194)
T cd01078 23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVF 102 (194)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEE
Confidence 56788999999995 999999999999889999999876421 1 11111 221 112 346788999999
Q ss_pred EccCCCccccccccHHHHhcCCCCcEEEEcCCCchh
Q 006212 289 LHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI 324 (656)
Q Consensus 289 l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~iv 324 (656)
.++|....+ .... -...+++.+++|+.+...+
T Consensus 103 ~at~~g~~~--~~~~--~~~~~~~~vv~D~~~~~~~ 134 (194)
T cd01078 103 AAGAAGVEL--LEKL--AWAPKPLAVAADVNAVPPV 134 (194)
T ss_pred ECCCCCcee--chhh--hcccCceeEEEEccCCCCC
Confidence 999855431 1111 1124567889998766543
No 204
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=97.18 E-value=0.0013 Score=55.92 Aligned_cols=70 Identities=7% Similarity=0.122 Sum_probs=54.2
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEe--CCCCCHHHHHHHhcCCCccEEE
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGV--DEEPNQDSLKEIGKVPAIEEYT 628 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~--D~~~~~e~l~~L~~~~~V~~v~ 628 (656)
|+|.+...|+||++.+|+.++...|+||..+.++..+..+..=|.+.+ |+..-+.+.++|.++.+|.++.
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KLidV~~V~ 74 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKLINVLQVN 74 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCCcCEEEEE
Confidence 677788899999999999999999999999999976655555444443 3333337788888888887765
No 205
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.14 E-value=0.002 Score=69.09 Aligned_cols=84 Identities=21% Similarity=0.245 Sum_probs=59.6
Q ss_pred CCCEEEEEecChhHHHHHHHHhc-CC-CEEEEECCCCCh-h-HHHH---cC--Cee-cCHHHHhccCCEEEEccCCCccc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKG-LG-MNVIAHDPYAPA-D-KARA---VG--VEL-VSFDQALATADFISLHMPLNPTT 297 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~-~G-~~Vi~~d~~~~~-~-~a~~---~g--~~~-~~l~ell~~aDvV~l~~Plt~~T 297 (656)
..++++|||.|.+|+.+++.+.. ++ .+|.+||++... + .+.+ .| +.. .++++.+++||+|+.++|..
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~--- 200 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST--- 200 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---
Confidence 47899999999999999986653 44 689999987522 2 2222 14 333 37889999999998888743
Q ss_pred cccccHHHHhcCCCCcEEEEc
Q 006212 298 SKIFNDETFAKMKKGVRIVNV 318 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINv 318 (656)
..++..+ .+|+|+ +||+
T Consensus 201 ~pvl~~~---~l~~g~-~i~~ 217 (314)
T PRK06141 201 EPLVRGE---WLKPGT-HLDL 217 (314)
T ss_pred CCEecHH---HcCCCC-EEEe
Confidence 4556553 468998 4554
No 206
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.14 E-value=0.0017 Score=68.45 Aligned_cols=111 Identities=19% Similarity=0.281 Sum_probs=81.1
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhc--CCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKG--LGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSK 299 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~--~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~ 299 (656)
.+.++.||++.|||-+. +|+.+|..|.. .++.|..+.... -++.+.+++||+|+.+++. .+
T Consensus 152 ~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T------------~~l~~~~k~ADIvV~AvGk----p~ 215 (284)
T PRK14193 152 YDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGT------------RDLAAHTRRADIIVAAAGV----AH 215 (284)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCC------------CCHHHHHHhCCEEEEecCC----cC
Confidence 47799999999999875 79999999987 789999886532 2588889999999999983 24
Q ss_pred cccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcH
Q 006212 300 IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTK 374 (656)
Q Consensus 300 li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ 374 (656)
++..+. +|+|+++||+|--.+ .+|++.| ||- .+ ..+.+.+ +||--||--.
T Consensus 216 ~i~~~~---ik~GavVIDvGin~~----------~~gkl~G---Dvd-~~-------v~~~a~~-iTPVPGGVGp 265 (284)
T PRK14193 216 LVTADM---VKPGAAVLDVGVSRA----------GDGKLVG---DVH-PD-------VWEVAGA-VSPNPGGVGP 265 (284)
T ss_pred ccCHHH---cCCCCEEEEcccccc----------CCCcEEe---ecC-Hh-------HHhhCCE-EeCCCCChhH
Confidence 677665 489999999984432 3455533 553 11 2223333 8999887644
No 207
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.13 E-value=0.0079 Score=65.35 Aligned_cols=160 Identities=19% Similarity=0.194 Sum_probs=111.9
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-h-HHHHcC----C-eecCHHHH---hccCCEEEEccCCCccccc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-D-KARAVG----V-ELVSFDQA---LATADFISLHMPLNPTTSK 299 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~-~a~~~g----~-~~~~l~el---l~~aDvV~l~~Plt~~T~~ 299 (656)
..||+||||.||+.+|......|++|.+|++.... + ..++.+ + ...+++|+ ++.-.-|++.+-.-.....
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~ 83 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA 83 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence 46999999999999999999999999999998632 2 222222 1 22367765 4566677777643211122
Q ss_pred cccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHH
Q 006212 300 IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEG 379 (656)
Q Consensus 300 li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~ 379 (656)
+| ++.+..|-+|-++||-+-..--|+..-.++|.+..|...|.-|.+.|-- .+. -|-+ +-+-+.|+++.
T Consensus 84 ~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeG----A~~-GPSi-----MpGG~~eay~~ 152 (473)
T COG0362 84 VI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEG----ARH-GPSI-----MPGGQKEAYEL 152 (473)
T ss_pred HH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccc----ccc-CCCc-----CCCCCHHHHHH
Confidence 33 5567789999999999988777888888889988888888899998832 232 3444 33677888888
Q ss_pred HHHHHHHHHHHHHcCCCCCccc
Q 006212 380 VAIEIAEAVVGALRGELSATAI 401 (656)
Q Consensus 380 ~~~~~~~~i~~~l~g~~~~~~V 401 (656)
++- +.+.|.+-..|++...-|
T Consensus 153 v~p-il~~IaAk~~g~pCc~~i 173 (473)
T COG0362 153 VAP-ILTKIAAKVDGEPCCTWI 173 (473)
T ss_pred HHH-HHHHHHhhcCCCCceeeE
Confidence 743 556666666666654433
No 208
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.09 E-value=0.0052 Score=73.01 Aligned_cols=128 Identities=16% Similarity=0.147 Sum_probs=84.9
Q ss_pred CEEEEEecChhHHHHHHHHh-cCCCEEEEECCCCC-hhHH-----------HHcC-------------Ceec-CHHHHhc
Q 006212 230 KTLAVMGFGKVGSEVARRAK-GLGMNVIAHDPYAP-ADKA-----------RAVG-------------VELV-SFDQALA 282 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk-~~G~~Vi~~d~~~~-~~~a-----------~~~g-------------~~~~-~l~ell~ 282 (656)
++|+|||.|.||..+|..+. ..|++|..||+... .+.+ .+.| +..+ ++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 68999999999999999988 77999999998642 1111 1111 1122 45 4579
Q ss_pred cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc-CCeEEEEeeccCCCCCCCCCccccCC
Q 006212 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFTEEPPAKDSKLVQHE 361 (656)
Q Consensus 283 ~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~-g~i~gA~lDV~~~EP~~~~~~L~~~~ 361 (656)
+||+|+=++|.+.+.+.-+-.+.=+.++|+++|....++= ....|.+.+.. .++ .+++.|. |+ ..-||.|
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l--~i~~la~~~~~p~r~--ig~Hff~--P~-~~~~lVE-- 459 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSL--PIGQIAAAAARPEQV--IGLHYFS--PV-EKMPLVE-- 459 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCC--CHHHHHHhcCcccce--EEEecCC--cc-ccCceEE--
Confidence 9999999999887777666555556689999987665543 34445555543 455 5667663 32 2346664
Q ss_pred cEEEcCC
Q 006212 362 NVTVTPH 368 (656)
Q Consensus 362 nvilTPH 368 (656)
||-.|+
T Consensus 460 -vv~g~~ 465 (708)
T PRK11154 460 -VIPHAK 465 (708)
T ss_pred -EECCCC
Confidence 554444
No 209
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.08 E-value=0.0021 Score=68.09 Aligned_cols=79 Identities=18% Similarity=0.269 Sum_probs=64.1
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcC----CCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGL----GMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTT 297 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~----G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T 297 (656)
.+.++.||++.|||-+. +|+.+|..|... +..|..+.... -++.+.+++||+|+.+++.
T Consensus 151 ~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T------------~nl~~~~~~ADIvIsAvGk---- 214 (293)
T PRK14185 151 YHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS------------KNLKKECLEADIIIAALGQ---- 214 (293)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC------------CCHHHHHhhCCEEEEccCC----
Confidence 46789999999999986 799999999865 78998875432 1578889999999999982
Q ss_pred cccccHHHHhcCCCCcEEEEcCC
Q 006212 298 SKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINvaR 320 (656)
.+++..+. .|+|+++||+|-
T Consensus 215 p~~i~~~~---vk~gavVIDvGi 234 (293)
T PRK14185 215 PEFVKADM---VKEGAVVIDVGT 234 (293)
T ss_pred cCccCHHH---cCCCCEEEEecC
Confidence 34576655 599999999984
No 210
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.05 E-value=0.00068 Score=60.71 Aligned_cols=87 Identities=25% Similarity=0.305 Sum_probs=61.3
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCee--cCHHHHhccCCEEEEccCCCcccccccc
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL--VSFDQALATADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~--~~l~ell~~aDvV~l~~Plt~~T~~li~ 302 (656)
.+++|+++.|||.|.+|..=++.|...|.+|.+++|.. ...+..+++ ..+++.+..+|+|+.+++... ++
T Consensus 3 l~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~~~~~~i~~~~~~~~~~l~~~~lV~~at~d~~-----~n 74 (103)
T PF13241_consen 3 LDLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---EFSEGLIQLIRREFEEDLDGADLVFAATDDPE-----LN 74 (103)
T ss_dssp E--TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---HHHHTSCEEEESS-GGGCTTESEEEE-SS-HH-----HH
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---hhhhhHHHHHhhhHHHHHhhheEEEecCCCHH-----HH
Confidence 36899999999999999999999999999999999875 112223333 256677899999998886322 45
Q ss_pred HHHHhcCCCCcEEEEcC
Q 006212 303 DETFAKMKKGVRIVNVA 319 (656)
Q Consensus 303 ~~~l~~mK~gailINva 319 (656)
+......+.--+++|++
T Consensus 75 ~~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 75 EAIYADARARGILVNVV 91 (103)
T ss_dssp HHHHHHHHHTTSEEEET
T ss_pred HHHHHHHhhCCEEEEEC
Confidence 55566666566888876
No 211
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.04 E-value=0.0025 Score=70.41 Aligned_cols=91 Identities=27% Similarity=0.393 Sum_probs=68.1
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCC-CEEEEECCCC--ChhHHHHcCCeecCH---HHHhccCCEEEEccCCCccccc
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYA--PADKARAVGVELVSF---DQALATADFISLHMPLNPTTSK 299 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G-~~Vi~~d~~~--~~~~a~~~g~~~~~l---~ell~~aDvV~l~~Plt~~T~~ 299 (656)
.|.++++.|||.|-||.-+|+.|...| .+|+..+|.. ..+.+.+.|..++.+ .+.+.++|+|+.++- ....
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs---a~~~ 251 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS---APHP 251 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC---CCcc
Confidence 389999999999999999999999999 5788888876 345578888776654 557899999999864 2345
Q ss_pred cccHHHHhcC---CCCcEEEEcC
Q 006212 300 IFNDETFAKM---KKGVRIVNVA 319 (656)
Q Consensus 300 li~~~~l~~m---K~gailINva 319 (656)
++..+.+... ++.-++||.|
T Consensus 252 ii~~~~ve~a~~~r~~~livDia 274 (414)
T COG0373 252 IITREMVERALKIRKRLLIVDIA 274 (414)
T ss_pred ccCHHHHHHHHhcccCeEEEEec
Confidence 5655544432 1225778876
No 212
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=97.01 E-value=0.0019 Score=67.64 Aligned_cols=81 Identities=17% Similarity=0.295 Sum_probs=66.1
Q ss_pred ccccccCCCEEEEEecChh-HHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCcccccc
Q 006212 222 YVGVSLVGKTLAVMGFGKV-GSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKI 300 (656)
Q Consensus 222 ~~g~~l~gktvGIIGlG~I-G~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~l 300 (656)
+.+.+|+||++.|||-+.| |+.+|..|...++.|.+++... -++.+..++||+|+.++- -.++
T Consensus 149 ~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T------------~~l~~~~k~ADIvv~AvG----~p~~ 212 (283)
T COG0190 149 EYGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT------------KDLASITKNADIVVVAVG----KPHF 212 (283)
T ss_pred HhCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC------------CCHHHHhhhCCEEEEecC----Cccc
Confidence 3467999999999999985 8999999999999999987542 247788999999999986 2356
Q ss_pred ccHHHHhcCCCCcEEEEcCCC
Q 006212 301 FNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 301 i~~~~l~~mK~gailINvaRg 321 (656)
+..+. .|+|+++||+|--
T Consensus 213 i~~d~---vk~gavVIDVGin 230 (283)
T COG0190 213 IKADM---VKPGAVVIDVGIN 230 (283)
T ss_pred ccccc---ccCCCEEEecCCc
Confidence 65544 5999999999843
No 213
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=97.00 E-value=0.0017 Score=63.08 Aligned_cols=76 Identities=16% Similarity=0.226 Sum_probs=60.5
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCC--CCCHHHHHHHhcCCCccEEEEEeecc
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE--EPNQDSLKEIGKVPAIEEYTLLHVSY 634 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~--~~~~e~l~~L~~~~~V~~v~~v~l~~ 634 (656)
|+|-+...|+||++++|+.+++++|+||..+.++.....+..-+.+.++. ..=+.+.++|.++..|.+|..+.-+.
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~KLidV~~V~~~~~~~ 80 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLNKLIDVLKVVDLTEEA 80 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHhccccEEEEEecCCcc
Confidence 67778899999999999999999999999999987765566666666654 33347788888888888887765433
No 214
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.00 E-value=0.003 Score=67.50 Aligned_cols=86 Identities=13% Similarity=0.135 Sum_probs=64.4
Q ss_pred CCCEEEEEecChhHHHHHHHHhc-CC-CEEEEECCCCCh--hHHHHc---CCee--cCHHHHhccCCEEEEccCCCcccc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKG-LG-MNVIAHDPYAPA--DKARAV---GVEL--VSFDQALATADFISLHMPLNPTTS 298 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~-~G-~~Vi~~d~~~~~--~~a~~~---g~~~--~~l~ell~~aDvV~l~~Plt~~T~ 298 (656)
..++++|||.|.+|+..++.+.. ++ -+|.+||++... ..+.+. ++.. .++++++.+||+|+.|+|.+ .
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~---~ 200 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR---T 200 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC---C
Confidence 46899999999999999999864 56 479999987522 222222 3332 37899999999999999854 3
Q ss_pred ccccHHHHhcCCCCcEEEEcCC
Q 006212 299 KIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINvaR 320 (656)
.++.. .+|||+.|+.+|.
T Consensus 201 Pl~~~----~~~~g~hi~~iGs 218 (304)
T PRK07340 201 PVYPE----AARAGRLVVAVGA 218 (304)
T ss_pred ceeCc----cCCCCCEEEecCC
Confidence 55653 2699999999884
No 215
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=96.99 E-value=0.0035 Score=65.68 Aligned_cols=94 Identities=18% Similarity=0.212 Sum_probs=64.2
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh--hHHHHc---C-CeecCHHHH-hccCCEEEEccCCC--ccc
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAV---G-VELVSFDQA-LATADFISLHMPLN--PTT 297 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~--~~a~~~---g-~~~~~l~el-l~~aDvV~l~~Plt--~~T 297 (656)
..+|+++|+|.|.+|++++..+...|.+|.++|++... +.+... + ....++++. +.++|+|+.|+|.. +..
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~ 194 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI 194 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence 46889999999999999999999889999999987421 122221 2 223355543 35899999999964 221
Q ss_pred cc-cccHHHHhcCCCCcEEEEcCCCch
Q 006212 298 SK-IFNDETFAKMKKGVRIVNVARGGV 323 (656)
Q Consensus 298 ~~-li~~~~l~~mK~gailINvaRg~i 323 (656)
.. .+. ...++++.+++|+.-...
T Consensus 195 ~~~~~~---~~~l~~~~~v~D~~y~p~ 218 (270)
T TIGR00507 195 DEPPVP---AEKLKEGMVVYDMVYNPG 218 (270)
T ss_pred CCCCCC---HHHcCCCCEEEEeccCCC
Confidence 11 122 334688888888875543
No 216
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.98 E-value=0.0021 Score=62.22 Aligned_cols=74 Identities=18% Similarity=0.280 Sum_probs=58.6
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCC--CCHHHHHHHhcCCCccEEEEEee
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE--PNQDSLKEIGKVPAIEEYTLLHV 632 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~--~~~e~l~~L~~~~~V~~v~~v~l 632 (656)
|+|-+...|+||++++|+.++.++|+||..+.++.....+..-+.+.++.. .-+.+.++|.++-.|.+|..+.-
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~~~i~qi~kQl~Kli~V~~V~~~~~ 77 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITKQLNKLVDVIKVSDLTE 77 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCHHHHHHHHHHHhcCccEEEEEecCC
Confidence 577788999999999999999999999999999887656677777777652 22366777788888887776654
No 217
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.96 E-value=0.0025 Score=67.26 Aligned_cols=78 Identities=22% Similarity=0.327 Sum_probs=65.1
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhc----CCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKG----LGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTT 297 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~----~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T 297 (656)
.+.++.||++.|||-+. +|+.+|..|.. .+..|..++... .++.+.+++||+|+.+++ .
T Consensus 151 ~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t------------~~l~~~~~~ADIVI~AvG----~ 214 (286)
T PRK14184 151 YGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT------------PDLAEECREADFLFVAIG----R 214 (286)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecC----C
Confidence 46799999999999986 69999999987 789998876432 258889999999999996 3
Q ss_pred cccccHHHHhcCCCCcEEEEcC
Q 006212 298 SKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINva 319 (656)
.+++..+.+ |+|+++||+|
T Consensus 215 p~li~~~~v---k~GavVIDVG 233 (286)
T PRK14184 215 PRFVTADMV---KPGAVVVDVG 233 (286)
T ss_pred CCcCCHHHc---CCCCEEEEee
Confidence 456777665 9999999998
No 218
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.95 E-value=0.0029 Score=67.15 Aligned_cols=81 Identities=19% Similarity=0.271 Sum_probs=65.0
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcC----CCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGL----GMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTT 297 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~----G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T 297 (656)
.+.++.||++.|||-+. +|+.+|..|... +..|..+.... -++.+.+++||+|+.++. .
T Consensus 155 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T------------~~l~~~~~~ADIvVsAvG-k--- 218 (297)
T PRK14168 155 SGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS------------KNLARHCQRADILIVAAG-V--- 218 (297)
T ss_pred hCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC------------cCHHHHHhhCCEEEEecC-C---
Confidence 47899999999999875 799999999876 78998875431 157888999999999997 2
Q ss_pred cccccHHHHhcCCCCcEEEEcCCCc
Q 006212 298 SKIFNDETFAKMKKGVRIVNVARGG 322 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINvaRg~ 322 (656)
.+++..+. .|+|+++||+|--.
T Consensus 219 p~~i~~~~---ik~gavVIDvGin~ 240 (297)
T PRK14168 219 PNLVKPEW---IKPGATVIDVGVNR 240 (297)
T ss_pred cCccCHHH---cCCCCEEEecCCCc
Confidence 34677665 48999999998443
No 219
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.95 E-value=0.0074 Score=67.46 Aligned_cols=107 Identities=25% Similarity=0.265 Sum_probs=71.0
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEE-C-------CC-CChhHH------------------HHcCCeecC
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH-D-------PY-APADKA------------------RAVGVELVS 276 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~-d-------~~-~~~~~a------------------~~~g~~~~~ 276 (656)
|.+|.|+||.|.|+|++|+..|+.|..+|.+|++. | +. .+.... ...++...+
T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~ 302 (444)
T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVE 302 (444)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC
Confidence 66899999999999999999999999999999983 3 22 111110 111344445
Q ss_pred HHHHh-ccCCEEEEccCCCccccccccHHHHhcCCC-CcEEEEc-CCCchhcHHHHHHhHhcC
Q 006212 277 FDQAL-ATADFISLHMPLNPTTSKIFNDETFAKMKK-GVRIVNV-ARGGVIDEEALVRALDSG 336 (656)
Q Consensus 277 l~ell-~~aDvV~l~~Plt~~T~~li~~~~l~~mK~-gailINv-aRg~ivde~aL~~aL~~g 336 (656)
.++++ ..||+++-|. +.+.|+.+...+++. |+.+|-- |-+ .+..++.....+.|
T Consensus 303 ~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~~~L~~rg 359 (444)
T PRK14031 303 GARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANM-PSTPEAIKVFQDAK 359 (444)
T ss_pred CcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHHHHHHHCC
Confidence 55554 4699998776 466788888888754 5655554 455 55555544333344
No 220
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=96.95 E-value=0.0014 Score=69.09 Aligned_cols=94 Identities=27% Similarity=0.367 Sum_probs=71.0
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChh-HHH-HcCCe----e---cCHHHHhccCCEEEEccCC-Cc
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD-KAR-AVGVE----L---VSFDQALATADFISLHMPL-NP 295 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~-~a~-~~g~~----~---~~l~ell~~aDvV~l~~Pl-t~ 295 (656)
.+...++.|||.|-+|..-|+.+.++|.+|...|.+...- ... ..+.+ + ..+++.+.++|+|+-++=. ..
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga 244 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA 244 (371)
T ss_pred CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence 3566789999999999999999999999999998774221 111 11222 1 2488999999999876532 22
Q ss_pred cccccccHHHHhcCCCCcEEEEcC
Q 006212 296 TTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 296 ~T~~li~~~~l~~mK~gailINva 319 (656)
..-.++.++.++.||||++|||++
T Consensus 245 kaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 245 KAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCceehhHHHHHhcCCCcEEEEEE
Confidence 345678889999999999999994
No 221
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=96.93 E-value=0.0028 Score=53.07 Aligned_cols=69 Identities=17% Similarity=0.234 Sum_probs=52.9
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCC-HHHHHHHhcCCCccEEEEEee
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPN-QDSLKEIGKVPAIEEYTLLHV 632 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~-~e~l~~L~~~~~V~~v~~v~l 632 (656)
|-+...|++|+++.|++++++.++||.++++... +.-.+.+++.+.-. ..++++|+++++|.+|+-+++
T Consensus 3 l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~---~~i~l~i~v~~~~~L~~li~~L~~i~gV~~V~R~~~ 72 (74)
T cd04877 3 LEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK---GRIYLNFPTIEFEKLQTLMPEIRRIDGVEDVKTVPY 72 (74)
T ss_pred EEEEEEccchHHHHHHHHHHHCCCceEEEEEecC---CeEEEEeEecCHHHHHHHHHHHhCCCCceEEEEeec
Confidence 5567889999999999999999999999999532 22233344433222 489999999999999988764
No 222
>PRK00194 hypothetical protein; Validated
Probab=96.93 E-value=0.00098 Score=57.88 Aligned_cols=68 Identities=21% Similarity=0.194 Sum_probs=49.9
Q ss_pred ccEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEE--EEeCC-CCCH-HHHHHHhcCCCccEE
Q 006212 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMA--IGVDE-EPNQ-DSLKEIGKVPAIEEY 627 (656)
Q Consensus 558 ~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~--i~~D~-~~~~-e~l~~L~~~~~V~~v 627 (656)
.+.+.+..+|+||+++.|++.|+++|+||.+++... .++...+. ++++. +.+. ++.++|.++.....+
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~ 74 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTI--MDGYFTMIMLVDISESKKDFAELKEELEELGKELGV 74 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHh--hCCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCC
Confidence 456777899999999999999999999999999865 35666664 44554 3334 555677776654443
No 223
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=96.92 E-value=0.011 Score=61.53 Aligned_cols=108 Identities=19% Similarity=0.203 Sum_probs=71.2
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEE--------CCCC-ChhHH------H-Hc------------CCeec
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH--------DPYA-PADKA------R-AV------------GVELV 275 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~--------d~~~-~~~~a------~-~~------------g~~~~ 275 (656)
+.++.|+|+.|-|+|++|+.+|+.|..+|++|++. ||.- +.+.. + +. +.+.+
T Consensus 33 ~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~ 112 (254)
T cd05313 33 NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF 112 (254)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe
Confidence 56889999999999999999999999999999953 3331 11100 0 11 23344
Q ss_pred CHHHHh-ccCCEEEEccCCCccccccccHHHHhcCC--CCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 276 SFDQAL-ATADFISLHMPLNPTTSKIFNDETFAKMK--KGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 276 ~l~ell-~~aDvV~l~~Plt~~T~~li~~~~l~~mK--~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
+.++++ .+||+++-|. +.+.|+.+...+++ +-.+|+-.+-+++-. ++ -+.|.++.|
T Consensus 113 ~~~~~~~~~~DIliPcA-----l~~~I~~~na~~i~~~~ak~I~EgAN~p~t~-~a-~~~L~~rGI 171 (254)
T cd05313 113 EGKKPWEVPCDIAFPCA-----TQNEVDAEDAKLLVKNGCKYVAEGANMPCTA-EA-IEVFRQAGV 171 (254)
T ss_pred CCcchhcCCCcEEEecc-----ccccCCHHHHHHHHHcCCEEEEeCCCCCCCH-HH-HHHHHHCCc
Confidence 555554 4799998875 56778888887774 334566666677644 32 234555434
No 224
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=96.90 E-value=0.0029 Score=67.95 Aligned_cols=85 Identities=15% Similarity=0.200 Sum_probs=59.5
Q ss_pred CEEEEEecChhHHHHHHHHhcC-CCEEEE-ECCCCChhHHHHcCCe-ecCHHHHhccCCEEEEccCCCccccccccHHHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL-GMNVIA-HDPYAPADKARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIFNDETF 306 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~-G~~Vi~-~d~~~~~~~a~~~g~~-~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l 306 (656)
.+|||||+|+||+.+++.++.. ++++.+ +|+..........++. ..+.++++.+.|+|++|+|... . -....
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~t--h---~~~~~ 78 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSAT--D---IPEQA 78 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCcc--C---HHHHH
Confidence 5899999999999999999865 899887 6876422222223332 2367788899999999999442 2 13333
Q ss_pred hcCCCCcEEEEcC
Q 006212 307 AKMKKGVRIVNVA 319 (656)
Q Consensus 307 ~~mK~gailINva 319 (656)
..|+.|.=+|+..
T Consensus 79 ~~L~aG~NVV~s~ 91 (324)
T TIGR01921 79 PYFAQFANTVDSF 91 (324)
T ss_pred HHHHcCCCEEECC
Confidence 4467777777774
No 225
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.89 E-value=0.0039 Score=66.18 Aligned_cols=79 Identities=16% Similarity=0.270 Sum_probs=63.9
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcC----CCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGL----GMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTT 297 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~----G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T 297 (656)
.+.++.||++.|||-+. +|+.+|..|... +..|..+.... -++.+..++||+|+.++-.
T Consensus 151 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T------------~~l~~~~~~ADIvIsAvGk---- 214 (297)
T PRK14167 151 AGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT------------DDLAAKTRRADIVVAAAGV---- 214 (297)
T ss_pred hCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----
Confidence 46789999999999986 799999999865 78998875432 1478889999999999872
Q ss_pred cccccHHHHhcCCCCcEEEEcCC
Q 006212 298 SKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINvaR 320 (656)
.+++..+. .|+|+++||+|-
T Consensus 215 p~~i~~~~---ik~gaiVIDvGi 234 (297)
T PRK14167 215 PELIDGSM---LSEGATVIDVGI 234 (297)
T ss_pred cCccCHHH---cCCCCEEEEccc
Confidence 34677655 599999999983
No 226
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.88 E-value=0.0044 Score=69.00 Aligned_cols=89 Identities=15% Similarity=0.219 Sum_probs=62.6
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCC--hhHHHHcC-Ceec---CHHHHhccCCEEEEccCCCcccc
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAP--ADKARAVG-VELV---SFDQALATADFISLHMPLNPTTS 298 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~--~~~a~~~g-~~~~---~l~ell~~aDvV~l~~Plt~~T~ 298 (656)
.+.|+++.|||.|.||+.+|+.|...|. +|.++++... ...+...+ .... ++.+.+.++|+|+.|++.. .
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~---~ 254 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL---E 254 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC---C
Confidence 4789999999999999999999998885 7999998752 23334444 3333 3556789999999998743 3
Q ss_pred ccccHHHHhcCCCCcEEEEcC
Q 006212 299 KIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINva 319 (656)
.++..+... .+..++||.|
T Consensus 255 ~vi~~~~~~--~~~~~~iDLa 273 (414)
T PRK13940 255 YIVTCKYVG--DKPRVFIDIS 273 (414)
T ss_pred eeECHHHhC--CCCeEEEEeC
Confidence 455554432 2234666664
No 227
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.85 E-value=0.0035 Score=66.58 Aligned_cols=79 Identities=16% Similarity=0.205 Sum_probs=64.4
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhc----CCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKG----LGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTT 297 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~----~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T 297 (656)
.+.++.||++.|||-+. +|+++|..|.. .|..|..+.... .++.+.+++||+|+.+++..
T Consensus 153 y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t------------~~l~~~~~~ADIvI~Avg~~--- 217 (295)
T PRK14174 153 YNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT------------KDIPSYTRQADILIAAIGKA--- 217 (295)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecCcc---
Confidence 46789999999999986 79999999876 578888776432 14788899999999999632
Q ss_pred cccccHHHHhcCCCCcEEEEcCC
Q 006212 298 SKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINvaR 320 (656)
+++..+.+ |+|+++||+|-
T Consensus 218 -~li~~~~v---k~GavVIDVgi 236 (295)
T PRK14174 218 -RFITADMV---KPGAVVIDVGI 236 (295)
T ss_pred -CccCHHHc---CCCCEEEEeec
Confidence 56887776 99999999983
No 228
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.85 E-value=0.005 Score=51.02 Aligned_cols=66 Identities=15% Similarity=0.347 Sum_probs=50.3
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEE--EEeCCCCC-HHHHHHHhcCCCccEE
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMA--IGVDEEPN-QDSLKEIGKVPAIEEY 627 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~--i~~D~~~~-~e~l~~L~~~~~V~~v 627 (656)
|.+...|+||.++.|++.+++.++||..++..+.. .+.+.+. +++.+... ..++++|+++|+|.-.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~-~~~~~~~~~vev~~~~~l~~i~~~L~~i~gV~~~ 70 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQG-RDYTVRDITVDAPSEEHAETIVAAVRALPEVKVL 70 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEec-CCEEEEEEEEEcCCHHHHHHHHHHHhcCCCeEEE
Confidence 56778999999999999999999999999986543 4555554 44444333 3889999999987643
No 229
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=96.84 E-value=0.0066 Score=64.95 Aligned_cols=111 Identities=21% Similarity=0.261 Sum_probs=68.6
Q ss_pred CEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCChhHHHHc-----------C--Cee-cCHHHHhccCCEEEEccCCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKARAV-----------G--VEL-VSFDQALATADFISLHMPLN 294 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~~~a~~~-----------g--~~~-~~l~ell~~aDvV~l~~Plt 294 (656)
++|+|||.|.+|..+|..+...|. +|+.+|.......+... . +.. .++++ +++||+|+++++ +
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag-~ 79 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAG-L 79 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCC-C
Confidence 579999999999999999887665 89999986543222211 1 122 36766 799999999998 3
Q ss_pred cccccc-------ccH-------HHHhcCCCCcEEEEcCCCchhc--HHHHHHh--HhcCCeEEEE--ee
Q 006212 295 PTTSKI-------FND-------ETFAKMKKGVRIVNVARGGVID--EEALVRA--LDSGVVAQAA--LD 344 (656)
Q Consensus 295 ~~T~~l-------i~~-------~~l~~mK~gailINvaRg~ivd--e~aL~~a--L~~g~i~gA~--lD 344 (656)
+...+. .|. +.+....+++++|+++- .+| ...+.+. +...++.|.+ ||
T Consensus 80 p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tN--P~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 80 PRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSN--PLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC--cHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 332221 111 12333457889999863 333 2233333 3344566654 55
No 230
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.81 E-value=0.0022 Score=64.56 Aligned_cols=90 Identities=18% Similarity=0.243 Sum_probs=61.6
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChh--HHHHcC-Ceec--CH-HHHhccCCEEEEccCCCccc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD--KARAVG-VELV--SF-DQALATADFISLHMPLNPTT 297 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~--~a~~~g-~~~~--~l-~ell~~aDvV~l~~Plt~~T 297 (656)
..+|.||++.|||.|.+|...++.|...|.+|.+++|....+ .....+ +.+. .+ ++.+..+|+|+.++....
T Consensus 5 ~l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~e-- 82 (202)
T PRK06718 5 MIDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPR-- 82 (202)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHH--
Confidence 357999999999999999999999999999999999875332 222222 3222 12 345789999988887433
Q ss_pred cccccHHHHhcCCCCcEEEEcC
Q 006212 298 SKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINva 319 (656)
+|.......+.+ +++|++
T Consensus 83 ---lN~~i~~~a~~~-~lvn~~ 100 (202)
T PRK06718 83 ---VNEQVKEDLPEN-ALFNVI 100 (202)
T ss_pred ---HHHHHHHHHHhC-CcEEEC
Confidence 233333334444 577875
No 231
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.81 E-value=0.0028 Score=71.90 Aligned_cols=71 Identities=15% Similarity=0.241 Sum_probs=53.0
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh--hHHHHcCCeecCHHHH--hccCCEEEEccCCC
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAVGVELVSFDQA--LATADFISLHMPLN 294 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~--~~a~~~g~~~~~l~el--l~~aDvV~l~~Plt 294 (656)
+.++.|++++|+|.|.+|++++..+...|++|.++|+.... +.+...+....+++++ +.++|+|+.|+|..
T Consensus 327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g 401 (477)
T PRK09310 327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPS 401 (477)
T ss_pred CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCC
Confidence 45678999999999999999999999999999999886421 1222233333344433 57899999999954
No 232
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.78 E-value=0.0025 Score=69.18 Aligned_cols=89 Identities=22% Similarity=0.320 Sum_probs=61.1
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHc---------CC------ee-cCHHHHhccCCEEEEccC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAV---------GV------EL-VSFDQALATADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~---------g~------~~-~~l~ell~~aDvV~l~~P 292 (656)
.+|+|||.|.+|..+|..|...| .|..|.++.. .+...+. +. .. .++++.++.+|+|++++|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence 57999999999999999999888 5666665431 1111111 11 12 267888999999999999
Q ss_pred CCccccccccHHHHhcCCCCcEEEEcCCC
Q 006212 293 LNPTTSKIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 293 lt~~T~~li~~~~l~~mK~gailINvaRg 321 (656)
...++..+. +....+++++.+|++..|
T Consensus 87 -s~~~~~vl~-~i~~~l~~~~~vIsl~kG 113 (341)
T PRK12439 87 -SHGFRGVLT-ELAKELRPWVPVVSLVKG 113 (341)
T ss_pred -HHHHHHHHH-HHHhhcCCCCEEEEEEeC
Confidence 333444442 233457888889999875
No 233
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.75 E-value=0.0034 Score=56.78 Aligned_cols=63 Identities=22% Similarity=0.393 Sum_probs=49.4
Q ss_pred EEEEEecChhHHHHHHHHhcC--CCEEE-EECCCCC-h-hHHHHcCCee-cCHHHHhc--cCCEEEEccCC
Q 006212 231 TLAVMGFGKVGSEVARRAKGL--GMNVI-AHDPYAP-A-DKARAVGVEL-VSFDQALA--TADFISLHMPL 293 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~--G~~Vi-~~d~~~~-~-~~a~~~g~~~-~~l~ell~--~aDvV~l~~Pl 293 (656)
++||||+|.+|+.....++.. ++++. ++|+... . ..++..|+.. .+++++++ +.|+|++++|.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~ 72 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPP 72 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSG
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCC
Confidence 699999999999999888755 67776 4788752 2 2345667764 48999998 79999999994
No 234
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=96.75 E-value=0.0045 Score=50.65 Aligned_cols=61 Identities=20% Similarity=0.362 Sum_probs=48.8
Q ss_pred CCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCC--CHHHHHHHhcCCCccEE
Q 006212 567 DQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEP--NQDSLKEIGKVPAIEEY 627 (656)
Q Consensus 567 D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~--~~e~l~~L~~~~~V~~v 627 (656)
|+||++.+|+.++...|+||..|.++..+..+..-+.+.++... -+.+..+|.++.+|.+|
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~~i~~l~~Ql~KlidV~~V 63 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDREIEQLVKQLEKLIDVVKV 63 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CCHHHHHHHHHHCSTTEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCchhHHHHHHHHhccCCeEeC
Confidence 68999999999999999999999999877777776767766633 33788999999988765
No 235
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=96.75 E-value=0.016 Score=61.93 Aligned_cols=128 Identities=23% Similarity=0.197 Sum_probs=81.8
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hh-----------HHHHcCC-------------ee-cCHHHHhc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-AD-----------KARAVGV-------------EL-VSFDQALA 282 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~-----------~a~~~g~-------------~~-~~l~ell~ 282 (656)
-+++||||.|.||+.+|..+...|+.|..+|++.. .+ ...+.|- .. .++. .++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 47999999999999999999887799999998731 11 1111121 11 1222 689
Q ss_pred cCCEEEEccCCCccccccccHHHHhcCCCCcEEE-EcCCCchhcHHHHHHhHhcC-CeEEEEeeccCCCCCCCCCccccC
Q 006212 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIV-NVARGGVIDEEALVRALDSG-VVAQAALDVFTEEPPAKDSKLVQH 360 (656)
Q Consensus 283 ~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailI-NvaRg~ivde~aL~~aL~~g-~i~gA~lDV~~~EP~~~~~~L~~~ 360 (656)
+||+|+=++|-+.+.++-+-++.=...||+++|- |+++-. ..++.++++.. ++ .|++.|.+-|+ =||.+
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~---it~ia~~~~rper~--iG~HFfNP~~~---m~LVE- 152 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLS---ITELAEALKRPERF--IGLHFFNPVPL---MPLVE- 152 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCC---HHHHHHHhCCchhE--EEEeccCCCCc---ceeEE-
Confidence 9999999999877766655555555578998885 444433 34455555432 44 66676653322 24543
Q ss_pred CcEEEcCC
Q 006212 361 ENVTVTPH 368 (656)
Q Consensus 361 ~nvilTPH 368 (656)
+|-+.+
T Consensus 153 --vI~g~~ 158 (307)
T COG1250 153 --VIRGEK 158 (307)
T ss_pred --EecCCC
Confidence 555554
No 236
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.72 E-value=0.0028 Score=58.11 Aligned_cols=88 Identities=18% Similarity=0.309 Sum_probs=54.5
Q ss_pred EEEEEe-cChhHHHHHHHHhcC-CCEEEEE-CCCC-ChhHHHHcC--Ce-----ecCHHHH-hccCCEEEEccCCCcccc
Q 006212 231 TLAVMG-FGKVGSEVARRAKGL-GMNVIAH-DPYA-PADKARAVG--VE-----LVSFDQA-LATADFISLHMPLNPTTS 298 (656)
Q Consensus 231 tvGIIG-lG~IG~~vA~~lk~~-G~~Vi~~-d~~~-~~~~a~~~g--~~-----~~~l~el-l~~aDvV~l~~Plt~~T~ 298 (656)
++||+| .|.+|+.+++.+... ++++.+. +... ....+...+ +. ..+.+++ ..++|+|++|+|.. .+.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~-~~~ 79 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHG-VSK 79 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcH-HHH
Confidence 589999 599999999999875 7887775 4222 111111111 10 1121222 25899999999944 333
Q ss_pred ccccHHHHhcCCCCcEEEEcCC
Q 006212 299 KIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINvaR 320 (656)
..+. .....+++|+++||++.
T Consensus 80 ~~~~-~~~~~~~~g~~viD~s~ 100 (122)
T smart00859 80 EIAP-LLPKAAEAGVKVIDLSS 100 (122)
T ss_pred HHHH-HHHhhhcCCCEEEECCc
Confidence 3322 23455799999999983
No 237
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.71 E-value=0.0039 Score=62.90 Aligned_cols=90 Identities=18% Similarity=0.125 Sum_probs=64.6
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChh--HHHHc-CCeec--C-HHHHhccCCEEEEccCCCcccc
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD--KARAV-GVELV--S-FDQALATADFISLHMPLNPTTS 298 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~--~a~~~-g~~~~--~-l~ell~~aDvV~l~~Plt~~T~ 298 (656)
.++.||++.|||.|.+|..-++.|..+|.+|.+++|....+ ...+. .+.+. + -.+.+..+|+|+.++...+
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~--- 81 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEE--- 81 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHH---
Confidence 46899999999999999999999999999999999876432 12222 34332 1 1345788999888765332
Q ss_pred ccccHHHHhcCCCCcEEEEcC
Q 006212 299 KIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINva 319 (656)
+|.......++..+++|+.
T Consensus 82 --ln~~i~~~a~~~~ilvn~~ 100 (205)
T TIGR01470 82 --LNRRVAHAARARGVPVNVV 100 (205)
T ss_pred --HHHHHHHHHHHcCCEEEEC
Confidence 4555566566666888875
No 238
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.69 E-value=0.0078 Score=64.92 Aligned_cols=86 Identities=15% Similarity=0.201 Sum_probs=62.6
Q ss_pred CCCEEEEEecChhHHHHHHHHh-cCCC-EEEEECCCCCh--hHHHH----cCCee---cCHHHHhccCCEEEEccCCCcc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAK-GLGM-NVIAHDPYAPA--DKARA----VGVEL---VSFDQALATADFISLHMPLNPT 296 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk-~~G~-~Vi~~d~~~~~--~~a~~----~g~~~---~~l~ell~~aDvV~l~~Plt~~ 296 (656)
..++++|||.|.+|+..++.+. .++. +|.+|+++... ..+.. .|+.. .++++.+.+||+|+.|+|..
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~-- 205 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE-- 205 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC--
Confidence 3579999999999999999987 4674 68999988522 22222 25433 36889999999999999853
Q ss_pred ccccccHHHHhcCCCCcEEEEcC
Q 006212 297 TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 297 T~~li~~~~l~~mK~gailINva 319 (656)
..++..+. +|+|+.+..++
T Consensus 206 -~p~i~~~~---l~~g~~i~~vg 224 (326)
T TIGR02992 206 -TPILHAEW---LEPGQHVTAMG 224 (326)
T ss_pred -CcEecHHH---cCCCcEEEeeC
Confidence 34565543 68898776554
No 239
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.68 E-value=0.011 Score=66.14 Aligned_cols=108 Identities=21% Similarity=0.261 Sum_probs=69.7
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEE-C-------CCC-ChhHHH---------------HcCCeecCHHH
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH-D-------PYA-PADKAR---------------AVGVELVSFDQ 279 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~-d-------~~~-~~~~a~---------------~~g~~~~~l~e 279 (656)
+.++.|+||.|.|+|++|+.+|+.|..+|++|++. | |.- +.+... ..+.+..+.++
T Consensus 227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~ 306 (445)
T PRK09414 227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS 306 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence 56789999999999999999999999999999986 5 221 221110 00223344555
Q ss_pred Hhc-cCCEEEEccCCCccccccccHHHHhcCC-CC-cEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 280 ALA-TADFISLHMPLNPTTSKIFNDETFAKMK-KG-VRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 280 ll~-~aDvV~l~~Plt~~T~~li~~~~l~~mK-~g-ailINvaRg~ivde~aL~~aL~~g~i 338 (656)
++. +||+++-|.. .+.|+.+....++ ++ .+|+-.|-+.+ ..++ .+.|.++.|
T Consensus 307 i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~-t~~A-~~~L~~rGI 361 (445)
T PRK09414 307 PWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS-TPEA-IEVFLEAGV 361 (445)
T ss_pred ccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC-CHHH-HHHHHHCCc
Confidence 554 7999988886 4457777666663 23 35556666776 4333 234555444
No 240
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=96.65 E-value=0.0055 Score=66.59 Aligned_cols=89 Identities=18% Similarity=0.221 Sum_probs=62.1
Q ss_pred EEEEEecChhHHHHHHHHhcCC--------CEEEEECCCC---ChhHHHH-----------cCC------ee-cCHHHHh
Q 006212 231 TLAVMGFGKVGSEVARRAKGLG--------MNVIAHDPYA---PADKARA-----------VGV------EL-VSFDQAL 281 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G--------~~Vi~~d~~~---~~~~a~~-----------~g~------~~-~~l~ell 281 (656)
+|+|||.|..|.++|..+..-| .+|..|.+.. ....... .|+ .. .++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 4899999999999999997656 8999997621 1111100 022 12 3789999
Q ss_pred ccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 006212 282 ATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 282 ~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg 321 (656)
++||+|++++| +...+.++ .+.-..++++..+|+++.|
T Consensus 81 ~~ADiIIlAVP-s~~i~~vl-~~l~~~l~~~~~iVs~tKG 118 (342)
T TIGR03376 81 KGADILVFVIP-HQFLEGIC-KQLKGHVKPNARAISCIKG 118 (342)
T ss_pred hcCCEEEEECC-hHHHHHHH-HHHHhhcCCCCEEEEEeCC
Confidence 99999999999 33333333 2333457888999999987
No 241
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.64 E-value=0.0035 Score=67.17 Aligned_cols=93 Identities=20% Similarity=0.286 Sum_probs=65.7
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-hHHHH-------c-CC------e-ecCHHHHhccCCEEEEccCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA-------V-GV------E-LVSFDQALATADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~a~~-------~-g~------~-~~~l~ell~~aDvV~l~~Pl 293 (656)
++|+|||-|.-|.++|+.|..-|.+|..|.++... ..... + |+ . ..|++++++.||+|++.+|
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP- 80 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP- 80 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC-
Confidence 57999999999999999999888888888764211 00000 0 22 2 2379999999999999999
Q ss_pred CccccccccHHHHhcCCCCcEEEEcCCCchh
Q 006212 294 NPTTSKIFNDETFAKMKKGVRIVNVARGGVI 324 (656)
Q Consensus 294 t~~T~~li~~~~l~~mK~gailINvaRg~iv 324 (656)
+...+..+..- -..+++++.+++++.|=-.
T Consensus 81 s~~~r~v~~~l-~~~l~~~~~iv~~sKGie~ 110 (329)
T COG0240 81 SQALREVLRQL-KPLLLKDAIIVSATKGLEP 110 (329)
T ss_pred hHHHHHHHHHH-hhhccCCCeEEEEeccccC
Confidence 43344443322 2457899999999976433
No 242
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=96.61 E-value=0.005 Score=58.93 Aligned_cols=66 Identities=11% Similarity=0.287 Sum_probs=56.8
Q ss_pred EecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHHhcCCCccEEEE
Q 006212 564 RQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTL 629 (656)
Q Consensus 564 ~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L~~~~~V~~v~~ 629 (656)
.-.+.||+++.|.++++++||+|......--+-.+++-+.|-++.++|.+++.+|+++++|..+..
T Consensus 101 ~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~~iP~~li~el~~i~gVk~i~I 166 (167)
T COG2150 101 EDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTERPIPGDLIDELKKIDGVKKISI 166 (167)
T ss_pred ccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEeccCCHHHHHHHhcccCceeEEe
Confidence 356789999999999999999998776644335677888899999999999999999999988753
No 243
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.60 E-value=0.022 Score=63.73 Aligned_cols=108 Identities=27% Similarity=0.380 Sum_probs=71.3
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEE--------ECCCC-ChhHH------H------------Hc-CCeec
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA--------HDPYA-PADKA------R------------AV-GVELV 275 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~--------~d~~~-~~~~a------~------------~~-g~~~~ 275 (656)
|.+|.|+||.|=|+|++|+..|+.|..+|.+|++ |||.- +.+.. + .. |.+.+
T Consensus 223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i 302 (445)
T PRK14030 223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF 302 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence 5679999999999999999999999999999999 88763 32220 0 11 33444
Q ss_pred CHHHHhc-cCCEEEEccCCCccccccccHHHHhcCC-CCc-EEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 276 SFDQALA-TADFISLHMPLNPTTSKIFNDETFAKMK-KGV-RIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 276 ~l~ell~-~aDvV~l~~Plt~~T~~li~~~~l~~mK-~ga-ilINvaRg~ivde~aL~~aL~~g~i 338 (656)
+-++++. +||+.+-|. +.+.|+.+....+. .++ +|+-.|-+ .+..++- +.|.+..|
T Consensus 303 ~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI 361 (445)
T PRK14030 303 AGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQ 361 (445)
T ss_pred CCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCC
Confidence 4455543 688887776 46678877777662 223 45555556 4444443 34555433
No 244
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.60 E-value=0.005 Score=66.09 Aligned_cols=90 Identities=18% Similarity=0.269 Sum_probs=60.7
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHc--------CC------ee-cCHHHHh-ccCCEEEEccCC
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAV--------GV------EL-VSFDQAL-ATADFISLHMPL 293 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~--------g~------~~-~~l~ell-~~aDvV~l~~Pl 293 (656)
+|+|||.|.+|..+|..|...|.+|..|+++.. .+...+. +. .. .++++.+ ..+|+|++++|
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk- 80 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP- 80 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC-
Confidence 699999999999999999999999999998642 1111111 11 11 2566666 58999999999
Q ss_pred CccccccccHHHHh-cCCCCcEEEEcCCCc
Q 006212 294 NPTTSKIFNDETFA-KMKKGVRIVNVARGG 322 (656)
Q Consensus 294 t~~T~~li~~~~l~-~mK~gailINvaRg~ 322 (656)
...+..++.. ... .+++++.++.+..|=
T Consensus 81 s~~~~~~l~~-l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 81 TQQLRTICQQ-LQDCHLKKNTPILICSKGI 109 (326)
T ss_pred HHHHHHHHHH-HHHhcCCCCCEEEEEEcCe
Confidence 3334444432 222 466777777776653
No 245
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.59 E-value=0.015 Score=59.27 Aligned_cols=95 Identities=28% Similarity=0.316 Sum_probs=61.9
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCCEEEE-ECCCC-------Ch-hH---HHHc-CCee------cCHHHHh-ccC
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA-HDPYA-------PA-DK---ARAV-GVEL------VSFDQAL-ATA 284 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~-~d~~~-------~~-~~---a~~~-g~~~------~~l~ell-~~a 284 (656)
.+|.|+++.|.|||++|+.+|+.|...|.+|++ .|.+. +. +. ..+. ++.. .+-++++ .+|
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDV 98 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccc
Confidence 568999999999999999999999999997766 45432 11 11 1111 1211 1223333 379
Q ss_pred CEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhc
Q 006212 285 DFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVID 325 (656)
Q Consensus 285 DvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivd 325 (656)
|+++-|.+.+ .++.+....++ -.+|+-.+-+++-+
T Consensus 99 DVlipaA~~~-----~i~~~~a~~l~-a~~V~e~AN~p~t~ 133 (217)
T cd05211 99 DIFAPCALGN-----VIDLENAKKLK-AKVVAEGANNPTTD 133 (217)
T ss_pred cEEeeccccC-----ccChhhHhhcC-ccEEEeCCCCCCCH
Confidence 9999988733 57777777776 33555556666654
No 246
>PRK08618 ornithine cyclodeaminase; Validated
Probab=96.58 E-value=0.0099 Score=64.08 Aligned_cols=86 Identities=26% Similarity=0.252 Sum_probs=62.9
Q ss_pred CCCEEEEEecChhHHHHHHHHh-cCCC-EEEEECCCCCh-h-HHH----HcCCe---ecCHHHHhccCCEEEEccCCCcc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAK-GLGM-NVIAHDPYAPA-D-KAR----AVGVE---LVSFDQALATADFISLHMPLNPT 296 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk-~~G~-~Vi~~d~~~~~-~-~a~----~~g~~---~~~l~ell~~aDvV~l~~Plt~~ 296 (656)
..++++|||.|.+|+..+..+. ..+. +|.+||++... + .+. ..++. +.+++++++++|+|+.|+|..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~-- 203 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK-- 203 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence 4679999999999999888765 4564 78889987522 1 222 22443 347899999999999999844
Q ss_pred ccccccHHHHhcCCCCcEEEEcCC
Q 006212 297 TSKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 297 T~~li~~~~l~~mK~gailINvaR 320 (656)
..++. +.+|+|+.++.+|.
T Consensus 204 -~p~i~----~~l~~G~hV~~iGs 222 (325)
T PRK08618 204 -TPVFS----EKLKKGVHINAVGS 222 (325)
T ss_pred -CcchH----HhcCCCcEEEecCC
Confidence 34453 44699999998875
No 247
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=96.58 E-value=0.0037 Score=61.41 Aligned_cols=74 Identities=12% Similarity=0.218 Sum_probs=59.8
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCC--CCHHHHHHHhcCCCccEEEEEee
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE--PNQDSLKEIGKVPAIEEYTLLHV 632 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~--~~~e~l~~L~~~~~V~~v~~v~l 632 (656)
|.+-+...|+||++.+|+.+|...|+||.++.+......+.+=|.+.++.. .-+.+.++|.++-++.+|..+.-
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~KLidVl~V~~~~~ 78 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYKLVNILKVQDITN 78 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHHHhHhhEEEecCC
Confidence 677788899999999999999999999999999876666666666666654 34578888888888888776643
No 248
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.58 E-value=0.0074 Score=66.12 Aligned_cols=91 Identities=18% Similarity=0.277 Sum_probs=61.0
Q ss_pred CCEEEEEecChhHHHHHHHHhcCC-------CEEEEECCCCC------hhHHHHc--------CC------ee-cCHHHH
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLG-------MNVIAHDPYAP------ADKARAV--------GV------EL-VSFDQA 280 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G-------~~Vi~~d~~~~------~~~a~~~--------g~------~~-~~l~el 280 (656)
-++|+|||.|..|.++|..+..-| .+|..|.+... .+...+. |+ .. .+++++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 358999999999999999997544 78888765532 1111110 11 22 378899
Q ss_pred hccCCEEEEccCCCccccccccHHHHh--cCCCCcEEEEcCCC
Q 006212 281 LATADFISLHMPLNPTTSKIFNDETFA--KMKKGVRIVNVARG 321 (656)
Q Consensus 281 l~~aDvV~l~~Plt~~T~~li~~~~l~--~mK~gailINvaRg 321 (656)
+++||+|++++| ....+.++.. .-. .+++++++|+++.|
T Consensus 91 v~~aDiIvlAVP-sq~l~~vl~~-l~~~~~l~~~~~iIS~aKG 131 (365)
T PTZ00345 91 VEDADLLIFVIP-HQFLESVLSQ-IKENNNLKKHARAISLTKG 131 (365)
T ss_pred HhcCCEEEEEcC-hHHHHHHHHH-hccccccCCCCEEEEEeCC
Confidence 999999999999 3333333322 212 35667899999876
No 249
>PTZ00117 malate dehydrogenase; Provisional
Probab=96.54 E-value=0.011 Score=63.66 Aligned_cols=92 Identities=20% Similarity=0.281 Sum_probs=59.0
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCC-CEEEEECCCCChhHHHHc---------CC----ee-cCHHHHhccCCEEEEcc
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYAPADKARAV---------GV----EL-VSFDQALATADFISLHM 291 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G-~~Vi~~d~~~~~~~a~~~---------g~----~~-~~l~ell~~aDvV~l~~ 291 (656)
+..++|+|||.|.+|..+|..+...| .++..||.......+..+ +. .. .+++ .+++||+|+++.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 45679999999999999999988777 689999986532111111 11 11 2555 779999999999
Q ss_pred --CCCcc-cc--------cccc--HHHHhcCCCCcEEEEcC
Q 006212 292 --PLNPT-TS--------KIFN--DETFAKMKKGVRIVNVA 319 (656)
Q Consensus 292 --Plt~~-T~--------~li~--~~~l~~mK~gailINva 319 (656)
|..+. ++ .++. .+.+....|.+++++++
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvs 122 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVT 122 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 43331 11 1110 12233346778888885
No 250
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.54 E-value=0.0073 Score=47.36 Aligned_cols=66 Identities=9% Similarity=0.327 Sum_probs=49.2
Q ss_pred EEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCC---CHHHHHHHhcCCCccEEE
Q 006212 562 LCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEP---NQDSLKEIGKVPAIEEYT 628 (656)
Q Consensus 562 lv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~---~~e~l~~L~~~~~V~~v~ 628 (656)
-+...|+||.++.+...|+++++||.++...... ++...+.+.++..- -..+++.|+++++|..+.
T Consensus 2 ~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~ 70 (71)
T cd04876 2 RVEAIDRPGLLADITTVIAEEKINILSVNTRTDD-DGLATIRLTLEVRDLEHLARIMRKLRQIPGVIDVR 70 (71)
T ss_pred EEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECC-CCEEEEEEEEEECCHHHHHHHHHHHhCCCCcEEEE
Confidence 3567899999999999999999999999886432 34455555554332 237788889888887653
No 251
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=96.52 E-value=0.0071 Score=51.09 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=43.2
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeec----cCccEEEEEEeCCCC--CH-HHHHHHhcC
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTF----RRNHGIMAIGVDEEP--NQ-DSLKEIGKV 621 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~----~gg~al~~i~~D~~~--~~-e~l~~L~~~ 621 (656)
+.+..+|+||++++|+..|+++++||.+++..... ..+.-.|+++++-+. +. ++.+.|+.+
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l 69 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEEL 69 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999999999996543 223445555555442 33 555555554
No 252
>PRK06046 alanine dehydrogenase; Validated
Probab=96.51 E-value=0.011 Score=63.92 Aligned_cols=85 Identities=18% Similarity=0.295 Sum_probs=61.1
Q ss_pred CCEEEEEecChhHHHHHHHHhc-CCC-EEEEECCCCCh-hH-HHH----cCC--e-ecCHHHHhccCCEEEEccCCCccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKG-LGM-NVIAHDPYAPA-DK-ARA----VGV--E-LVSFDQALATADFISLHMPLNPTT 297 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~-~G~-~Vi~~d~~~~~-~~-a~~----~g~--~-~~~l~ell~~aDvV~l~~Plt~~T 297 (656)
-+++||||.|.+|+..++.+.. .+. +|.+||++... +. +.+ .++ . ..+++++++ +|+|++|+|.+
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~--- 204 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR--- 204 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence 4689999999999999998874 455 56778988622 22 222 243 2 237899887 99999999854
Q ss_pred cccccHHHHhcCCCCcEEEEcCC
Q 006212 298 SKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINvaR 320 (656)
..++..+. +|+|+.|..+|.
T Consensus 205 ~P~~~~~~---l~~g~hV~~iGs 224 (326)
T PRK06046 205 KPVVKAEW---IKEGTHINAIGA 224 (326)
T ss_pred CcEecHHH---cCCCCEEEecCC
Confidence 35666554 589999888874
No 253
>PLN02477 glutamate dehydrogenase
Probab=96.51 E-value=0.1 Score=58.17 Aligned_cols=107 Identities=28% Similarity=0.335 Sum_probs=68.5
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEE-EC-------CCC-ChhHHHH----c-------CCeecCHHHH-hc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA-HD-------PYA-PADKARA----V-------GVELVSFDQA-LA 282 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~-~d-------~~~-~~~~a~~----~-------g~~~~~l~el-l~ 282 (656)
|.+|.|+||.|.|+|++|+.+|+.|...|.+|++ .| |.- +.+...+ . +.+.++.+++ ..
T Consensus 201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~ 280 (410)
T PLN02477 201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVE 280 (410)
T ss_pred CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceec
Confidence 5689999999999999999999999999999995 34 331 2222111 0 1123344444 34
Q ss_pred cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 283 ~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
+||+++-|. ..+.|+++...++| -.+|+-.+-+.+ ..++ -+.|++..|
T Consensus 281 ~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~ea-~~~L~~rGI 328 (410)
T PLN02477 281 PCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DPEA-DEILRKKGV 328 (410)
T ss_pred cccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CHHH-HHHHHHCCc
Confidence 788887765 34567887777774 346666666776 3333 244555444
No 254
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.49 E-value=0.0068 Score=58.60 Aligned_cols=68 Identities=19% Similarity=0.236 Sum_probs=51.1
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcC-Ceec--CH-HHHhccCCEEEEccC
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG-VELV--SF-DQALATADFISLHMP 292 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g-~~~~--~l-~ell~~aDvV~l~~P 292 (656)
..+|.|++|.|||-|.+|...++.|...|.+|.+++|....+.. +++ +.+. .+ ++-+.++|+|+.++.
T Consensus 8 ~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~~~l~-~l~~i~~~~~~~~~~dl~~a~lViaaT~ 79 (157)
T PRK06719 8 MFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEICKEMK-ELPYITWKQKTFSNDDIKDAHLIYAATN 79 (157)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccCHHHH-hccCcEEEecccChhcCCCceEEEECCC
Confidence 46899999999999999999999999999999999887544332 232 2221 12 234678898888776
No 255
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.49 E-value=0.0071 Score=49.52 Aligned_cols=62 Identities=18% Similarity=0.326 Sum_probs=46.0
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCC-CCHHHHHHHhc
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE-PNQDSLKEIGK 620 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~-~~~e~l~~L~~ 620 (656)
+.+-+..+|+||.+++++.+|+++++||..+...+...+..+.+.+.++.+ -.+.+.+.|++
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~L~~ 64 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQEDRERAKEILKE 64 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHHHHHHHHHHHHH
Confidence 567778899999999999999999999999987765423356666766532 22366666655
No 256
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=96.47 E-value=0.076 Score=56.78 Aligned_cols=64 Identities=22% Similarity=0.387 Sum_probs=51.2
Q ss_pred ccCCCEEEEEecC---hhHHHHHHHHhcCCCEEEEECCCC---Ch---hHHHHcCCee---cCHHHHhccCCEEEE
Q 006212 226 SLVGKTLAVMGFG---KVGSEVARRAKGLGMNVIAHDPYA---PA---DKARAVGVEL---VSFDQALATADFISL 289 (656)
Q Consensus 226 ~l~gktvGIIGlG---~IG~~vA~~lk~~G~~Vi~~d~~~---~~---~~a~~~g~~~---~~l~ell~~aDvV~l 289 (656)
.+.|++|+++|-| ++..+++..+..+|++|....|.. +. +.+++.|..+ .++++.++.||+|..
T Consensus 147 ~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt 222 (301)
T TIGR00670 147 RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYV 222 (301)
T ss_pred CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEE
Confidence 4789999999995 999999999999999999987753 22 2334456543 489999999999987
No 257
>PRK04435 hypothetical protein; Provisional
Probab=96.47 E-value=0.012 Score=56.25 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=58.0
Q ss_pred cCccEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCC----HHHHHHHhcCCCccEEEEEe
Q 006212 556 LEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPN----QDSLKEIGKVPAIEEYTLLH 631 (656)
Q Consensus 556 g~~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~----~e~l~~L~~~~~V~~v~~v~ 631 (656)
+..-.|.+...|+||+++.|.+.|+++++||-.++.... .++.+-+.+.++.... .+++++|+++++|.+|+++.
T Consensus 67 ~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~-~~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~i~~ 145 (147)
T PRK04435 67 GKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIP-LQGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKVELIG 145 (147)
T ss_pred CcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcC-CCCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 334456678899999999999999999999999986432 2455555555554322 38999999999999999875
Q ss_pred e
Q 006212 632 V 632 (656)
Q Consensus 632 l 632 (656)
.
T Consensus 146 ~ 146 (147)
T PRK04435 146 M 146 (147)
T ss_pred c
Confidence 3
No 258
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=96.46 E-value=0.0085 Score=60.23 Aligned_cols=92 Identities=25% Similarity=0.321 Sum_probs=63.0
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCC---C-ChhH----HHHcC-----------------Cee----
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY---A-PADK----ARAVG-----------------VEL---- 274 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~---~-~~~~----a~~~g-----------------~~~---- 274 (656)
..|..++|+|+|.|.+|..+|+.|...|. ++..+|+. . ...+ ..+.| +..
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~ 96 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD 96 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence 35789999999999999999999999998 69988875 1 0000 01111 111
Q ss_pred -----cCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEE
Q 006212 275 -----VSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVN 317 (656)
Q Consensus 275 -----~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailIN 317 (656)
.+++++++++|+|+-| ..+.+++.++.......+++..++..
T Consensus 97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~ 143 (200)
T TIGR02354 97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAA 143 (200)
T ss_pred eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 0244567788888877 45667787777777777776665553
No 259
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.46 E-value=0.0085 Score=63.44 Aligned_cols=69 Identities=22% Similarity=0.242 Sum_probs=51.0
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCCh--hHHHHcC-----Ceec---CHHHHhccCCEEEEccCCC
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPA--DKARAVG-----VELV---SFDQALATADFISLHMPLN 294 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~--~~a~~~g-----~~~~---~l~ell~~aDvV~l~~Plt 294 (656)
.+.+|++.|+|.|..|++++..|...|+ +|..+|++... ..+...+ .... ++.+.++++|+|+.|+|.-
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG 203 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence 4568999999999999999999999997 79999987522 2222221 1222 3455778899999999854
No 260
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=96.46 E-value=0.0078 Score=64.59 Aligned_cols=88 Identities=25% Similarity=0.305 Sum_probs=53.2
Q ss_pred CEEEEEecChhHHHHHHHHhc-CCC-EEEEECCCCC-hhH----HHHcCCee---cCHHHHhccCCEEEEccCCCccccc
Q 006212 230 KTLAVMGFGKVGSEVARRAKG-LGM-NVIAHDPYAP-ADK----ARAVGVEL---VSFDQALATADFISLHMPLNPTTSK 299 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~-~G~-~Vi~~d~~~~-~~~----a~~~g~~~---~~l~ell~~aDvV~l~~Plt~~T~~ 299 (656)
+++||||.|..|+.-++.+.. ++. +|.+|+++.. .+. ..+.++.. .+.++++++||+|+.|+|.+..+ -
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P 207 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-P 207 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-E
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-c
Confidence 589999999999999998874 554 7999999852 111 12234432 37999999999999999865432 5
Q ss_pred cccHHHHhcCCCCcEEEEcCCC
Q 006212 300 IFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 300 li~~~~l~~mK~gailINvaRg 321 (656)
++..+ .+|||+.|+.++..
T Consensus 208 ~~~~~---~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 208 VFDAE---WLKPGTHINAIGSY 226 (313)
T ss_dssp SB-GG---GS-TT-EEEE-S-S
T ss_pred cccHH---HcCCCcEEEEecCC
Confidence 66655 46899999888754
No 261
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=96.45 E-value=0.0051 Score=52.13 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=37.3
Q ss_pred EEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCC
Q 006212 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE 608 (656)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~ 608 (656)
.|.+..+|+||+++.|++.|+++|.||.+.+.... ++.-.|++.++-
T Consensus 3 iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~--~~~F~m~~~~~~ 49 (77)
T cd04893 3 VISALGTDRPGILNELTRAVSESGCNILDSRMAIL--GTEFALTMLVEG 49 (77)
T ss_pred EEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEE--cCEEEEEEEEEe
Confidence 35567899999999999999999999999999873 455555555543
No 262
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.41 E-value=0.0084 Score=67.57 Aligned_cols=109 Identities=23% Similarity=0.256 Sum_probs=69.4
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-h-----hHHHHcCCeec---CHHHHhccCCEEEEccCCCcc
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-A-----DKARAVGVELV---SFDQALATADFISLHMPLNPT 296 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~-----~~a~~~g~~~~---~l~ell~~aDvV~l~~Plt~~ 296 (656)
-+.+++|+|+|+|..|.++|+.|+..|++|.++|.... . ....+.|+.+. ...+.+.++|+|+.. |.-+.
T Consensus 11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~ 89 (458)
T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRI 89 (458)
T ss_pred hhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCC
Confidence 46689999999999999999999999999999997642 1 23455677553 234556889999886 65543
Q ss_pred ccccc-----------cHH-HHhcCCC-CcEEEEcCCCchhcHHHHHHhHhc
Q 006212 297 TSKIF-----------NDE-TFAKMKK-GVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 297 T~~li-----------~~~-~l~~mK~-gailINvaRg~ivde~aL~~aL~~ 335 (656)
+...+ ++- .+.+..+ ..+-|--+.|+--..+-+...|+.
T Consensus 90 ~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~ 141 (458)
T PRK01710 90 DSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKE 141 (458)
T ss_pred CchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 33222 221 2222222 233333345777655555666654
No 263
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=96.40 E-value=0.011 Score=64.02 Aligned_cols=90 Identities=12% Similarity=0.046 Sum_probs=58.5
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHH
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDE 304 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~ 304 (656)
.+.||++.|||.|.||+.+|+.|...|. +|++.+|........... ...-+...++|+|+.|.--|......+..+
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~---~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~ 247 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTVV---REELSFQDPYDVIFFGSSESAYAFPHLSWE 247 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhhh---hhhhhcccCCCEEEEcCCcCCCCCceeeHH
Confidence 4889999999999999999999999985 689999875211111000 011144579999998743233333445555
Q ss_pred HHhcCCCCcEEEEcC
Q 006212 305 TFAKMKKGVRIVNVA 319 (656)
Q Consensus 305 ~l~~mK~gailINva 319 (656)
.+...++ -+++|.+
T Consensus 248 ~~~~~~~-r~~iDLA 261 (338)
T PRK00676 248 SLADIPD-RIVFDFN 261 (338)
T ss_pred HHhhccC-cEEEEec
Confidence 5544332 3777775
No 264
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.40 E-value=0.0086 Score=64.66 Aligned_cols=65 Identities=29% Similarity=0.370 Sum_probs=48.4
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-C------HHHHhccCCEEEEccC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-S------FDQALATADFISLHMP 292 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~------l~ell~~aDvV~l~~P 292 (656)
.|++|+|+|+|-.|..-.+.++++|++|+++|+.. ..+.++++|...+ + ++.+-+.+|+|+.++|
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~ 238 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG 238 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC
Confidence 38999999999999999999999999999999987 4567788876321 1 1222222666666665
No 265
>PRK06823 ornithine cyclodeaminase; Validated
Probab=96.36 E-value=0.017 Score=62.06 Aligned_cols=86 Identities=16% Similarity=0.241 Sum_probs=63.7
Q ss_pred CCEEEEEecChhHHHHHHHHhc-CC-CEEEEECCCCCh-hH----HHHcCCee--c-CHHHHhccCCEEEEccCCCcccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKG-LG-MNVIAHDPYAPA-DK----ARAVGVEL--V-SFDQALATADFISLHMPLNPTTS 298 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~-~G-~~Vi~~d~~~~~-~~----a~~~g~~~--~-~l~ell~~aDvV~l~~Plt~~T~ 298 (656)
-++++|||.|..++.-++.+.. +. -+|.+||++... +. ..+.++.. + +.++++++||+|+.|+|. +.
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s---~~ 204 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPS---RE 204 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCC---CC
Confidence 5799999999999999988763 33 489999998632 21 22224433 3 789999999999999873 34
Q ss_pred ccccHHHHhcCCCCcEEEEcCC
Q 006212 299 KIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINvaR 320 (656)
-++..+. +|||+.|+.+|.
T Consensus 205 P~~~~~~---l~~G~hi~~iGs 223 (315)
T PRK06823 205 PLLQAED---IQPGTHITAVGA 223 (315)
T ss_pred ceeCHHH---cCCCcEEEecCC
Confidence 6676554 689999988874
No 266
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.33 E-value=0.0088 Score=49.97 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=38.4
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCC
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE 609 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~ 609 (656)
+.+..+|+||++++|+..|.++|+||.+++......++.-.|+++++-+
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~ 50 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELE 50 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeC
Confidence 4567899999999999999999999999998754444445555565544
No 267
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.32 E-value=0.0048 Score=58.29 Aligned_cols=107 Identities=17% Similarity=0.227 Sum_probs=70.2
Q ss_pred EEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeec--------------C-HHHHhccCCEEEEccCCCcc
Q 006212 232 LAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV--------------S-FDQALATADFISLHMPLNPT 296 (656)
Q Consensus 232 vGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~--------------~-l~ell~~aDvV~l~~Plt~~ 296 (656)
|.|+|.|.||.-+|.+|+..|.+|..+++....+...+.|+... . ..+....+|+|++|+... +
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~-~ 79 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAY-Q 79 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGG-G
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEeccc-c
Confidence 68999999999999999989999999987653333444554321 1 124678899999999733 3
Q ss_pred ccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEE
Q 006212 297 TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQA 341 (656)
Q Consensus 297 T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA 341 (656)
+...+.. .-..+++++.++-.--| +-.++.+.+.+...++.++
T Consensus 80 ~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g 122 (151)
T PF02558_consen 80 LEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGG 122 (151)
T ss_dssp HHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEE
T ss_pred hHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEE
Confidence 4444433 33445666666655444 4346777666655566553
No 268
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=96.28 E-value=0.11 Score=55.81 Aligned_cols=93 Identities=20% Similarity=0.257 Sum_probs=63.5
Q ss_pred cCCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCC--Ch-hH----HHHcCCe--e-cCHHHHhccCCEEEEcc----
Q 006212 227 LVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA--PA-DK----ARAVGVE--L-VSFDQALATADFISLHM---- 291 (656)
Q Consensus 227 l~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~--~~-~~----a~~~g~~--~-~~l~ell~~aDvV~l~~---- 291 (656)
+.|++|+++|= +++.++++..+..+|++|....|.. .. +. +++.|.. . .++++.+++||+|..-.
T Consensus 150 l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~ 229 (304)
T PRK00779 150 LKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVSM 229 (304)
T ss_pred cCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCcccc
Confidence 77999999998 7899999999999999999988753 21 22 3445643 2 48999999999998742
Q ss_pred CCCc---c-----ccccccHHHHhcCCCCcEEEEcC
Q 006212 292 PLNP---T-----TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 292 Plt~---~-----T~~li~~~~l~~mK~gailINva 319 (656)
.... + -..-++++.++.+|++++|.-|.
T Consensus 230 ~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHpl 265 (304)
T PRK00779 230 GQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHCL 265 (304)
T ss_pred ccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecCC
Confidence 1000 0 12234555566666666666554
No 269
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=96.28 E-value=0.079 Score=57.50 Aligned_cols=94 Identities=19% Similarity=0.271 Sum_probs=65.0
Q ss_pred ccCCCEEEEEecC--hhHHHHHHHHhcCCCEEEEECCCC--Chh--------HHHHcCCe--e-cCHHHHhccCCEEEEc
Q 006212 226 SLVGKTLAVMGFG--KVGSEVARRAKGLGMNVIAHDPYA--PAD--------KARAVGVE--L-VSFDQALATADFISLH 290 (656)
Q Consensus 226 ~l~gktvGIIGlG--~IG~~vA~~lk~~G~~Vi~~d~~~--~~~--------~a~~~g~~--~-~~l~ell~~aDvV~l~ 290 (656)
.+.|++|++||=+ ++..+++..+..+|++|....|.. +.+ .+...|.. . .++++.+++||+|..-
T Consensus 153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~ 232 (334)
T PRK01713 153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTD 232 (334)
T ss_pred CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 4789999999986 578888888999999999988753 211 12334643 2 4899999999999873
Q ss_pred c----CCCcc---------ccccccHHHHhcC-CCCcEEEEcC
Q 006212 291 M----PLNPT---------TSKIFNDETFAKM-KKGVRIVNVA 319 (656)
Q Consensus 291 ~----Plt~~---------T~~li~~~~l~~m-K~gailINva 319 (656)
+ ....+ ....++.+.++.+ |++++|.-|.
T Consensus 233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~l 275 (334)
T PRK01713 233 VWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCL 275 (334)
T ss_pred ceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCC
Confidence 2 10000 1123566777765 6788887775
No 270
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.26 E-value=0.011 Score=49.72 Aligned_cols=61 Identities=16% Similarity=0.217 Sum_probs=40.2
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCH-HHHHHHhcC
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQ-DSLKEIGKV 621 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~-e~l~~L~~~ 621 (656)
+-+.-+|+||+++.|+..|+++|+||.+++.......=...+.+.++...+. ++.+.|..+
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~~~~~l~~~l~~l 63 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSADSEALLKDLLFK 63 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3456799999999999999999999999975443311223344555544333 444444443
No 271
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.25 E-value=0.016 Score=63.92 Aligned_cols=89 Identities=17% Similarity=0.174 Sum_probs=64.0
Q ss_pred CCEEEEEecChhHHHHHHHHhc-CC--CEEEEECCCCCh-h-HH---HH-c-C---Cee-cCHHHHhccCCEEEEccCCC
Q 006212 229 GKTLAVMGFGKVGSEVARRAKG-LG--MNVIAHDPYAPA-D-KA---RA-V-G---VEL-VSFDQALATADFISLHMPLN 294 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~-~G--~~Vi~~d~~~~~-~-~a---~~-~-g---~~~-~~l~ell~~aDvV~l~~Plt 294 (656)
-++++|||.|..++.-++.+.. +. -+|.+||++... + .+ .+ . | +.. .+.++++++||+|+.|++.+
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 4789999999999999988775 42 489999998632 1 11 11 1 2 223 37999999999999999854
Q ss_pred c---cccccccHHHHhcCCCCcEEEEcCC
Q 006212 295 P---TTSKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 295 ~---~T~~li~~~~l~~mK~gailINvaR 320 (656)
. .+.-++..+. +|||+.|+.++.
T Consensus 235 ~~~~s~~Pv~~~~~---lkpG~hv~~ig~ 260 (379)
T PRK06199 235 TGDPSTYPYVKREW---VKPGAFLLMPAA 260 (379)
T ss_pred CCCCCcCcEecHHH---cCCCcEEecCCc
Confidence 3 3446776554 589998876654
No 272
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.22 E-value=0.011 Score=49.12 Aligned_cols=61 Identities=16% Similarity=0.127 Sum_probs=42.8
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeec-cCccEEEEEEeCCCCC---HHHHHHHhcC
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTF-RRNHGIMAIGVDEEPN---QDSLKEIGKV 621 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~-~gg~al~~i~~D~~~~---~e~l~~L~~~ 621 (656)
+-+..+|+||.+++++++|+++|+||-.+...+.. ..+.....+.++.+.+ +++++.|++.
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~~~~~i~~~L~~~ 66 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRSKENELIEELKAK 66 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecchHHHHHHHHHhCc
Confidence 34578999999999999999999999999887652 2333444555544434 2666666543
No 273
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=96.18 E-value=0.13 Score=54.99 Aligned_cols=93 Identities=24% Similarity=0.279 Sum_probs=63.2
Q ss_pred cCCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCC--C-hhH-------HHHcCCe---ecCHHHHhccCCEEEEcc-
Q 006212 227 LVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA--P-ADK-------ARAVGVE---LVSFDQALATADFISLHM- 291 (656)
Q Consensus 227 l~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~--~-~~~-------a~~~g~~---~~~l~ell~~aDvV~l~~- 291 (656)
+.|.+|+++|- +++-++++..+..||++|....|.. . ... +.+.|.. ..++++.+++||+|..-.
T Consensus 146 l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w 225 (304)
T TIGR00658 146 LKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVW 225 (304)
T ss_pred CCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence 78999999997 6888999999999999999987753 2 111 2334542 248999999999998842
Q ss_pred -CCCcc----------ccccccHHHHhcCCCCcEEEEcC
Q 006212 292 -PLNPT----------TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 292 -Plt~~----------T~~li~~~~l~~mK~gailINva 319 (656)
....+ ....++++.++.+|+++++.-|.
T Consensus 226 ~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHpl 264 (304)
T TIGR00658 226 VSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHCL 264 (304)
T ss_pred ccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECCC
Confidence 11110 12245666666666666666664
No 274
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.15 E-value=0.011 Score=47.83 Aligned_cols=59 Identities=15% Similarity=0.272 Sum_probs=43.7
Q ss_pred EEEecCCCCchhhHHhhhhcCCccccceEeeeec---cCccEEEEEEeCCCCCH---HHHHHHhc
Q 006212 562 LCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTF---RRNHGIMAIGVDEEPNQ---DSLKEIGK 620 (656)
Q Consensus 562 lv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~---~gg~al~~i~~D~~~~~---e~l~~L~~ 620 (656)
.+..+|+||.++.|.++++++++||.++...+.. ..+.+.+.+.++-.-.+ ++++.|++
T Consensus 2 ~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~ 66 (73)
T cd04886 2 RVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALRE 66 (73)
T ss_pred EEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 3567899999999999999999999999886543 24556666666543323 66777665
No 275
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.13 E-value=0.077 Score=57.08 Aligned_cols=103 Identities=17% Similarity=0.086 Sum_probs=70.1
Q ss_pred hHHHHHHHHhcCCCEEEEECCCCCh--------hHH-----------HHcC-------------Ceec-C--HHHHhccC
Q 006212 240 VGSEVARRAKGLGMNVIAHDPYAPA--------DKA-----------RAVG-------------VELV-S--FDQALATA 284 (656)
Q Consensus 240 IG~~vA~~lk~~G~~Vi~~d~~~~~--------~~a-----------~~~g-------------~~~~-~--l~ell~~a 284 (656)
||..+|..+...|++|..||++... +.+ ...| +..+ + +.+.+++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 6889999999889999999987621 111 1111 1222 2 55788999
Q ss_pred CEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc-CCeEEEEeecc
Q 006212 285 DFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVF 346 (656)
Q Consensus 285 DvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~-g~i~gA~lDV~ 346 (656)
|+|+-++|...+.+..+-.+..+.++++++|....++ +....|.+.++. .++ .+++.|
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~--~~~~~la~~~~~p~r~--~g~Hf~ 139 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTST--FLVTDLQRHVAHPERF--LNAHWL 139 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEcccc--CCHHHHHhhcCCcccE--EEEecC
Confidence 9999999998888877767777779999999554443 445566555542 344 444443
No 276
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=96.12 E-value=0.02 Score=61.76 Aligned_cols=86 Identities=22% Similarity=0.281 Sum_probs=63.8
Q ss_pred CCEEEEEecChhHHHHHHHHhc-CCC-EEEEECCCCC-hhH-H---HHc-CC--ee-cCHHHHhccCCEEEEccCCCccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKG-LGM-NVIAHDPYAP-ADK-A---RAV-GV--EL-VSFDQALATADFISLHMPLNPTT 297 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~-~G~-~Vi~~d~~~~-~~~-a---~~~-g~--~~-~~l~ell~~aDvV~l~~Plt~~T 297 (656)
-+++||||.|..++.-++.++. ++. +|.+|+++.. .+. + .+. +. .. .+.+++++.||+|+.|+|.++
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~-- 207 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE-- 207 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC--
Confidence 4689999999999999999884 454 7899998862 221 2 122 22 23 378999999999999999554
Q ss_pred cccccHHHHhcCCCCcEEEEcCC
Q 006212 298 SKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINvaR 320 (656)
-++..+. +|||+.|..+|.
T Consensus 208 -Pil~~~~---l~~G~hI~aiGa 226 (330)
T COG2423 208 -PVLKAEW---LKPGTHINAIGA 226 (330)
T ss_pred -CeecHhh---cCCCcEEEecCC
Confidence 5666655 579999888873
No 277
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.10 E-value=0.024 Score=59.24 Aligned_cols=91 Identities=18% Similarity=0.199 Sum_probs=57.9
Q ss_pred CEEEEEecChhHHHHHHHHhcC---CCEEEE-ECCCCChhHHHHcCCeec-CHHHH-hccCCEEEEccCCCccccccccH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL---GMNVIA-HDPYAPADKARAVGVELV-SFDQA-LATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~---G~~Vi~-~d~~~~~~~a~~~g~~~~-~l~el-l~~aDvV~l~~Plt~~T~~li~~ 303 (656)
.+|||||+|.||+.+++.+..- ++++.+ ||+...........+..+ +++++ ....|+|+=|.... -..-+..
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~~~--av~e~~~ 80 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQQ--AIAEHAE 80 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCCHH--HHHHHHH
Confidence 5899999999999999998753 366544 565532211111224444 79997 58899999988722 1111223
Q ss_pred HHHhcCCCCcEEEEcCCCchhc
Q 006212 304 ETFAKMKKGVRIVNVARGGVID 325 (656)
Q Consensus 304 ~~l~~mK~gailINvaRg~ivd 325 (656)
.. |+.|.-++=.+=|.+.|
T Consensus 81 ~i---L~~g~dlvv~SvGALaD 99 (267)
T PRK13301 81 GC---LTAGLDMIICSAGALAD 99 (267)
T ss_pred HH---HhcCCCEEEEChhHhcC
Confidence 33 45666666666677776
No 278
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.09 E-value=0.018 Score=63.47 Aligned_cols=85 Identities=25% Similarity=0.258 Sum_probs=62.5
Q ss_pred CEEEEEecChhHHHHHHHHhcCC-CEEEEECCCC-ChhHHHHcC---Cee--c------CHHHHhccCCEEEEccCCCcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYA-PADKARAVG---VEL--V------SFDQALATADFISLHMPLNPT 296 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G-~~Vi~~d~~~-~~~~a~~~g---~~~--~------~l~ell~~aDvV~l~~Plt~~ 296 (656)
++|.|||.|.||+.+|..|.+.| .+|++.|+.. ...++.... ++. + .+.+++++.|+|+.|+|..-
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~- 80 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFV- 80 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchh-
Confidence 67999999999999999998877 9999999985 334443332 221 1 36788999999999999542
Q ss_pred ccccccHHHH-hcCCCCcEEEEcCC
Q 006212 297 TSKIFNDETF-AKMKKGVRIVNVAR 320 (656)
Q Consensus 297 T~~li~~~~l-~~mK~gailINvaR 320 (656)
+...+ +.++-|.-.+|++-
T Consensus 81 -----~~~i~ka~i~~gv~yvDts~ 100 (389)
T COG1748 81 -----DLTILKACIKTGVDYVDTSY 100 (389)
T ss_pred -----hHHHHHHHHHhCCCEEEccc
Confidence 33333 34677888888874
No 279
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.08 E-value=0.03 Score=59.84 Aligned_cols=85 Identities=16% Similarity=0.143 Sum_probs=61.2
Q ss_pred CCEEEEEecChhHHHHHHHHhc-CCC-EEEEECCCCCh-h-HHHH----cCC--eec-CHHHHhccCCEEEEccCCCccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKG-LGM-NVIAHDPYAPA-D-KARA----VGV--ELV-SFDQALATADFISLHMPLNPTT 297 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~-~G~-~Vi~~d~~~~~-~-~a~~----~g~--~~~-~l~ell~~aDvV~l~~Plt~~T 297 (656)
-+++||||.|..|+.-++.+.. +.. +|.+||++... + .+.+ .|+ ..+ ++++++.+||+|+.++|.+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~--- 193 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSD--- 193 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC---
Confidence 5799999999999998888774 454 79999988632 1 1111 254 333 7999999999999998843
Q ss_pred cccccHHHHhcCCCCcEEEEcC
Q 006212 298 SKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINva 319 (656)
..++..+. +|||+.+.-+|
T Consensus 194 ~P~~~~~~---l~pg~hV~aiG 212 (301)
T PRK06407 194 TPIFNRKY---LGDEYHVNLAG 212 (301)
T ss_pred CcEecHHH---cCCCceEEecC
Confidence 46666554 57887766555
No 280
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.07 E-value=0.026 Score=60.25 Aligned_cols=93 Identities=14% Similarity=0.126 Sum_probs=59.2
Q ss_pred CEEEEEecChhHHHHHHHHhcCC--CEEEEECCCCChhH--HHHc-------CC--ee-cCHHHHhccCCEEEEccCCCc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAPADK--ARAV-------GV--EL-VSFDQALATADFISLHMPLNP 295 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G--~~Vi~~d~~~~~~~--a~~~-------g~--~~-~~l~ell~~aDvV~l~~Plt~ 295 (656)
++|+|||.|.+|+.+|..|...| .+|..+|+...... +.++ +. .. ..-.+.+++||+|++++...
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~- 79 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAP- 79 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCC-
Confidence 47999999999999999998888 48999998653221 2211 11 11 12234578999999998743
Q ss_pred cccccc-------cH-------HHHhcCCCCcEEEEcCCCchhc
Q 006212 296 TTSKIF-------ND-------ETFAKMKKGVRIVNVARGGVID 325 (656)
Q Consensus 296 ~T~~li-------~~-------~~l~~mK~gailINvaRg~ivd 325 (656)
...++- |. ..+.+..|.+++++++ ..+|
T Consensus 80 ~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs--NP~d 121 (306)
T cd05291 80 QKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS--NPVD 121 (306)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec--ChHH
Confidence 222221 11 1233356678888887 4444
No 281
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.07 E-value=0.027 Score=62.60 Aligned_cols=89 Identities=24% Similarity=0.382 Sum_probs=63.8
Q ss_pred ccCCCEEEEEec----------ChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCc
Q 006212 226 SLVGKTLAVMGF----------GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNP 295 (656)
Q Consensus 226 ~l~gktvGIIGl----------G~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~ 295 (656)
.+.|++|+|+|+ ..-...+++.|...|.+|.+|||..........+ ...++++.++.||.|+++++-.
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~-~~~~~~~~~~~ad~~v~~t~~~- 387 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLP-LIDDLEEALKGADALVILTDHD- 387 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcc-cCCCHHHHHhCCCEEEEecCCH-
Confidence 589999999998 3467789999999999999999986443322222 1347889999999999999833
Q ss_pred cccccccHHHHhc-CCCCcEEEEc
Q 006212 296 TTSKIFNDETFAK-MKKGVRIVNV 318 (656)
Q Consensus 296 ~T~~li~~~~l~~-mK~gailINv 318 (656)
+-+. ++-+.+.. |+ ..+++|+
T Consensus 388 ~~~~-~~~~~~~~~~~-~~~v~D~ 409 (411)
T TIGR03026 388 EFKD-LDLEKIKDLMK-GKVVVDT 409 (411)
T ss_pred HHhc-cCHHHHHHhcC-CCEEEeC
Confidence 2222 34444443 54 4588885
No 282
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.06 E-value=0.018 Score=64.03 Aligned_cols=67 Identities=19% Similarity=0.226 Sum_probs=46.3
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHH-HHcCCe-ecCHHHHhccCCEEEEccCCCc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKA-RAVGVE-LVSFDQALATADFISLHMPLNP 295 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a-~~~g~~-~~~l~ell~~aDvV~l~~Plt~ 295 (656)
.++|.|||+|.+|.++|+.|+..|++|.++|++...... ...+-. ....+....++|+|+.+.+..+
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~ 71 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKK 71 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCC
Confidence 478999999999999999999999999999976532110 000001 1123344578999888776543
No 283
>PLN02527 aspartate carbamoyltransferase
Probab=96.06 E-value=0.18 Score=54.17 Aligned_cols=65 Identities=15% Similarity=0.147 Sum_probs=49.4
Q ss_pred ccCCCEEEEEecC---hhHHHHHHHHhcC-CCEEEEECCCC---Ch---hHHHHcCCee---cCHHHHhccCCEEEEc
Q 006212 226 SLVGKTLAVMGFG---KVGSEVARRAKGL-GMNVIAHDPYA---PA---DKARAVGVEL---VSFDQALATADFISLH 290 (656)
Q Consensus 226 ~l~gktvGIIGlG---~IG~~vA~~lk~~-G~~Vi~~d~~~---~~---~~a~~~g~~~---~~l~ell~~aDvV~l~ 290 (656)
.+.|+||+++|-+ ++..+++..+..+ |++|....|.. +. +.+++.|..+ .++++.+++||+|..-
T Consensus 148 ~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~ 225 (306)
T PLN02527 148 RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQT 225 (306)
T ss_pred CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEEC
Confidence 3789999999976 6889999998887 99998887743 22 2233445532 4899999999999884
No 284
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=96.03 E-value=0.059 Score=52.12 Aligned_cols=92 Identities=18% Similarity=0.272 Sum_probs=66.1
Q ss_pred CCCEEEEEe--cChhHHHHHHHHhcCCCEEEEECCCC---Ch--h-------HHHHcCC--ee-cCHHHHhccCCEEEEc
Q 006212 228 VGKTLAVMG--FGKVGSEVARRAKGLGMNVIAHDPYA---PA--D-------KARAVGV--EL-VSFDQALATADFISLH 290 (656)
Q Consensus 228 ~gktvGIIG--lG~IG~~vA~~lk~~G~~Vi~~d~~~---~~--~-------~a~~~g~--~~-~~l~ell~~aDvV~l~ 290 (656)
.|+||++|| .+++..+++..+..||+++....|.. +. + .+...|. .. .++++.++++|+|..-
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence 489999999 38999999999999999999988764 22 1 1222343 33 3899999999999876
Q ss_pred cCCC---cc--------ccccccHHHHhcCCCCcEEEEcC
Q 006212 291 MPLN---PT--------TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 291 ~Plt---~~--------T~~li~~~~l~~mK~gailINva 319 (656)
.-.. .+ ....++++.++.+|+++++.-|.
T Consensus 81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L 120 (158)
T PF00185_consen 81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL 120 (158)
T ss_dssp SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence 5431 00 01456888888889999999886
No 285
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=96.01 E-value=0.0067 Score=61.45 Aligned_cols=174 Identities=23% Similarity=0.254 Sum_probs=99.1
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHH-----------cCC------------------e-ecC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARA-----------VGV------------------E-LVS 276 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~-----------~g~------------------~-~~~ 276 (656)
.=+.|+|||.|.||..+|+.+...|+.|..+|.+.. ..++.+ .+. + ..+
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tn 89 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTN 89 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCC
Confidence 346799999999999999999999999999998752 222211 000 0 113
Q ss_pred HHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEE-EcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCC
Q 006212 277 FDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIV-NVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDS 355 (656)
Q Consensus 277 l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailI-NvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~ 355 (656)
+.++++++|+|+=++-.+-+.+.-+-++.=..+|+.++++ |+++-.+ .++..+++... ..+||+.|.+-|. -
T Consensus 90 v~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~l---t~ia~~~~~~s-rf~GlHFfNPvPv---M 162 (298)
T KOG2304|consen 90 VSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSL---TDIASATQRPS-RFAGLHFFNPVPV---M 162 (298)
T ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeH---HHHHhhccChh-hhceeeccCCchh---H
Confidence 5567778888776554332222211122222368887764 6655443 44555555532 2378888876654 2
Q ss_pred ccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHc--CCCCCccccCCCCChhhhhhccchHHHHHHH
Q 006212 356 KLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALR--GELSATAINAPMVPSEVLSELAPYVVLAKKL 424 (656)
Q Consensus 356 ~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~--g~~~~~~Vn~p~~~~~~~~~l~p~~~laerl 424 (656)
.|. -||=|+..+- +....+.+|-+ |+.+..+-..|-..-.-+ |.||+..|-|+
T Consensus 163 KLv---EVir~~~TS~-----------eTf~~l~~f~k~~gKttVackDtpGFIVNRl--LiPyl~ea~r~ 217 (298)
T KOG2304|consen 163 KLV---EVIRTDDTSD-----------ETFNALVDFGKAVGKTTVACKDTPGFIVNRL--LIPYLMEAIRM 217 (298)
T ss_pred HHh---hhhcCCCCCH-----------HHHHHHHHHHHHhCCCceeecCCCchhhhHH--HHHHHHHHHHH
Confidence 455 4777776422 22333334322 344444444443322222 67888877665
No 286
>PRK07589 ornithine cyclodeaminase; Validated
Probab=96.00 E-value=0.03 Score=60.96 Aligned_cols=87 Identities=25% Similarity=0.292 Sum_probs=60.7
Q ss_pred CCEEEEEecChhHHHHHHHHh-cCCC-EEEEECCCCCh-h-H---HHHcCCe--e-cCHHHHhccCCEEEEccCCCcccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAK-GLGM-NVIAHDPYAPA-D-K---ARAVGVE--L-VSFDQALATADFISLHMPLNPTTS 298 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk-~~G~-~Vi~~d~~~~~-~-~---a~~~g~~--~-~~l~ell~~aDvV~l~~Plt~~T~ 298 (656)
-++++|||.|..++.-++.+. -+.. +|.+|+++... + . ..+.++. . .++++++++||+|+.++|.+ +..
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~-~~~ 207 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK-TNA 207 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC-CCC
Confidence 468999999999999888766 3454 79999988532 1 1 1222432 2 37999999999999999833 223
Q ss_pred ccccHHHHhcCCCCcEEEEcC
Q 006212 299 KIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINva 319 (656)
-++..+. +|||+.|.-+|
T Consensus 208 Pvl~~~~---lkpG~hV~aIG 225 (346)
T PRK07589 208 TILTDDM---VEPGMHINAVG 225 (346)
T ss_pred ceecHHH---cCCCcEEEecC
Confidence 4565543 58998766665
No 287
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.93 E-value=0.039 Score=62.59 Aligned_cols=101 Identities=22% Similarity=0.322 Sum_probs=70.2
Q ss_pred cccCCCEEEEEec----------ChhHHHHHHHHhcCCCEEEEECCCCChhHHH-Hc----------------------C
Q 006212 225 VSLVGKTLAVMGF----------GKVGSEVARRAKGLGMNVIAHDPYAPADKAR-AV----------------------G 271 (656)
Q Consensus 225 ~~l~gktvGIIGl----------G~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~-~~----------------------g 271 (656)
..+.|++|+|+|+ ..-...+++.|...|.+|.+|||........ .. +
T Consensus 320 ~~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (473)
T PLN02353 320 NTVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQ 399 (473)
T ss_pred cccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccc
Confidence 3689999999998 4467789999999999999999986443221 11 1
Q ss_pred Ceec-CHHHHhccCCEEEEccCCCccccccccHHH-HhcCCCCcEEEEcCCCchhcHHHH
Q 006212 272 VELV-SFDQALATADFISLHMPLNPTTSKIFNDET-FAKMKKGVRIVNVARGGVIDEEAL 329 (656)
Q Consensus 272 ~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~-l~~mK~gailINvaRg~ivde~aL 329 (656)
+.+. ++++.++.||+|+++++-. +-+.+ +-+. ...|++..+|+|+ | .++|.+.+
T Consensus 400 ~~~~~~~~~a~~~aD~vvi~t~~~-ef~~l-~~~~~~~~m~~~~~viD~-r-n~l~~~~~ 455 (473)
T PLN02353 400 VSVVWDAYEATKGAHGICILTEWD-EFKTL-DYQKIYDNMQKPAFVFDG-R-NVLDHEKL 455 (473)
T ss_pred eeeeCCHHHHhcCCCEEEECCCCh-Hhccc-CHHHHHHhccCCCEEEEC-C-CCCCHHHH
Confidence 2333 5678999999999999843 33333 4333 4557766689995 4 34466555
No 288
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=95.92 E-value=0.018 Score=58.44 Aligned_cols=92 Identities=17% Similarity=0.279 Sum_probs=59.8
Q ss_pred EEEEEecChhHHHHHHHHhcC--CCE-EEEECCCCChhH--HHHcCC-eecCHHHHhccCCEEEEccCCCccccccccHH
Q 006212 231 TLAVMGFGKVGSEVARRAKGL--GMN-VIAHDPYAPADK--ARAVGV-ELVSFDQALATADFISLHMPLNPTTSKIFNDE 304 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~--G~~-Vi~~d~~~~~~~--a~~~g~-~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~ 304 (656)
+|||||+|.||+.+.+.++.- +++ +.+||+...... +...+. ...++++++++.|+++=|... +..+. -
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~-~Av~e----~ 76 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASP-EAVRE----Y 76 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCH-HHHHH----H
Confidence 799999999999999999843 454 677998753322 223333 235799999999999988762 22222 2
Q ss_pred HHhcCCCCcEEEEcCCCchhcHH
Q 006212 305 TFAKMKKGVRIVNVARGGVIDEE 327 (656)
Q Consensus 305 ~l~~mK~gailINvaRg~ivde~ 327 (656)
..+.||.|.=++=++-|.+.|+.
T Consensus 77 ~~~~L~~g~d~iV~SVGALad~~ 99 (255)
T COG1712 77 VPKILKAGIDVIVMSVGALADEG 99 (255)
T ss_pred hHHHHhcCCCEEEEechhccChH
Confidence 23335565444445556766544
No 289
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=95.91 E-value=0.028 Score=58.93 Aligned_cols=64 Identities=23% Similarity=0.271 Sum_probs=43.8
Q ss_pred CEEEEEecChhHHHHHHHHhcC-CCEEEE-ECCCCChhH-HHHc--CCee-cCHHHHhccCCEEEEccCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL-GMNVIA-HDPYAPADK-ARAV--GVEL-VSFDQALATADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~-G~~Vi~-~d~~~~~~~-a~~~--g~~~-~~l~ell~~aDvV~l~~Pl 293 (656)
.+|||||+|.||+.+++.+... ++++.+ +++....+. .... ++.. .+++++-.+.|+|+.|+|.
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~ 71 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGH 71 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCH
Confidence 4799999999999999999865 566544 343322221 1212 4443 4788885569999999993
No 290
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=95.91 E-value=0.0075 Score=50.94 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=38.8
Q ss_pred EEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHHhc
Q 006212 563 CRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGK 620 (656)
Q Consensus 563 v~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L~~ 620 (656)
+.-+|+||+++.|+..|.++|+||.+++..+....-..++.++.+..-.+++.+.|.+
T Consensus 7 v~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~~~~~~l~~~L~~ 64 (76)
T PF13740_consen 7 VVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPEDSLERLESALEE 64 (76)
T ss_dssp EEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESHHHHHHHHHHHHH
T ss_pred EEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCcccHHHHHHHHHH
Confidence 4579999999999999999999999999987654334555666663322234444443
No 291
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=95.90 E-value=0.031 Score=57.95 Aligned_cols=107 Identities=31% Similarity=0.437 Sum_probs=68.4
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCCEEEEE--------CCCC-ChhHH----HHcCC-------------eecCHH
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH--------DPYA-PADKA----RAVGV-------------ELVSFD 278 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~--------d~~~-~~~~a----~~~g~-------------~~~~l~ 278 (656)
.++.|+++.|-|+|.+|+.+|+.|...|++|++. ||.. +.+.. .+.+. ++.+-+
T Consensus 28 ~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 107 (244)
T PF00208_consen 28 DSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPND 107 (244)
T ss_dssp HSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHH
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEeccc
Confidence 3699999999999999999999999999999875 6543 22211 12222 222332
Q ss_pred -HHh-ccCCEEEEccCCCccccccccHHHHh-cCCCCcEEEEc-CCCchhcHHHHHHhHhcCCe
Q 006212 279 -QAL-ATADFISLHMPLNPTTSKIFNDETFA-KMKKGVRIVNV-ARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 279 -ell-~~aDvV~l~~Plt~~T~~li~~~~l~-~mK~gailINv-aRg~ivde~aL~~aL~~g~i 338 (656)
+++ .+||+++.|.- .+.|+.+... .+|.++.+|=- +-+.+- .++.. .|++..|
T Consensus 108 ~~il~~~~DiliP~A~-----~~~I~~~~~~~~i~~~akiIvegAN~p~t-~~a~~-~L~~rGI 164 (244)
T PF00208_consen 108 DEILSVDCDILIPCAL-----GNVINEDNAPSLIKSGAKIIVEGANGPLT-PEADE-ILRERGI 164 (244)
T ss_dssp CHGGTSSSSEEEEESS-----STSBSCHHHCHCHHTT-SEEEESSSSSBS-HHHHH-HHHHTT-
T ss_pred cccccccccEEEEcCC-----CCeeCHHHHHHHHhccCcEEEeCcchhcc-HHHHH-HHHHCCC
Confidence 555 58999988853 4457777777 67766555544 455554 33333 5665444
No 292
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=95.87 E-value=0.12 Score=58.01 Aligned_cols=95 Identities=24% Similarity=0.265 Sum_probs=59.8
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEE-EC-------CCC-ChhHH---H-----------H-----cCCeec
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA-HD-------PYA-PADKA---R-----------A-----VGVELV 275 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~-~d-------~~~-~~~~a---~-----------~-----~g~~~~ 275 (656)
+.+|.|||+.|=|+|++|+..|+.|..+|.+|++ .| |.- +.+.. . . .+.+++
T Consensus 232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~ 311 (454)
T PTZ00079 232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV 311 (454)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe
Confidence 5679999999999999999999999999999994 34 321 11111 0 0 023333
Q ss_pred CHHHHh-ccCCEEEEccCCCccccccccHHHHhcC-CCCcEEEEcC-CCch
Q 006212 276 SFDQAL-ATADFISLHMPLNPTTSKIFNDETFAKM-KKGVRIVNVA-RGGV 323 (656)
Q Consensus 276 ~l~ell-~~aDvV~l~~Plt~~T~~li~~~~l~~m-K~gailINva-Rg~i 323 (656)
+-++++ -.||+.+-|. +.+.|+.+....+ +.++.+|--+ -+.+
T Consensus 312 ~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~ 357 (454)
T PTZ00079 312 PGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPT 357 (454)
T ss_pred CCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCC
Confidence 333333 3678777665 4556776666554 4455555444 3443
No 293
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=95.84 E-value=0.0095 Score=54.73 Aligned_cols=85 Identities=19% Similarity=0.366 Sum_probs=50.9
Q ss_pred EEEEEe-cChhHHHHHHHHhcC-CCEEEE-ECCCC--ChhHHHHc----CCe---ecC-HHHHhccCCEEEEccCCCccc
Q 006212 231 TLAVMG-FGKVGSEVARRAKGL-GMNVIA-HDPYA--PADKARAV----GVE---LVS-FDQALATADFISLHMPLNPTT 297 (656)
Q Consensus 231 tvGIIG-lG~IG~~vA~~lk~~-G~~Vi~-~d~~~--~~~~a~~~----g~~---~~~-l~ell~~aDvV~l~~Plt~~T 297 (656)
+|+||| .|.+|+.+.+.|... .+++.. +++.. ........ +.. ..+ -.+.+.++|+|++|+|... +
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~-~ 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGA-S 79 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHH-H
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhH-H
Confidence 689999 999999999999864 566554 33322 11111111 121 111 2234599999999999332 2
Q ss_pred cccccHHHHhcCCCCcEEEEcCC
Q 006212 298 SKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINvaR 320 (656)
.... .. .+++|+.+||.+.
T Consensus 80 ~~~~-~~---~~~~g~~ViD~s~ 98 (121)
T PF01118_consen 80 KELA-PK---LLKAGIKVIDLSG 98 (121)
T ss_dssp HHHH-HH---HHHTTSEEEESSS
T ss_pred HHHH-HH---HhhCCcEEEeCCH
Confidence 2121 11 1588999999973
No 294
>PRK08291 ectoine utilization protein EutC; Validated
Probab=95.82 E-value=0.041 Score=59.46 Aligned_cols=82 Identities=21% Similarity=0.218 Sum_probs=58.2
Q ss_pred CCCEEEEEecChhHHHHHHHHhc-CC-CEEEEECCCCCh-h-HHH----HcCCe---ecCHHHHhccCCEEEEccCCCcc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKG-LG-MNVIAHDPYAPA-D-KAR----AVGVE---LVSFDQALATADFISLHMPLNPT 296 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~-~G-~~Vi~~d~~~~~-~-~a~----~~g~~---~~~l~ell~~aDvV~l~~Plt~~ 296 (656)
..++++|||.|.+|+..+..+.. .+ -+|.+|+++... + .+. ..|+. ..++++++.+||+|+.++|..
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~-- 208 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE-- 208 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC--
Confidence 35799999999999999888874 55 479999987522 2 122 12454 247899999999999999853
Q ss_pred ccccccHHHHhcCCCCcEE
Q 006212 297 TSKIFNDETFAKMKKGVRI 315 (656)
Q Consensus 297 T~~li~~~~l~~mK~gail 315 (656)
..++..+. +|+|+.+
T Consensus 209 -~p~i~~~~---l~~g~~v 223 (330)
T PRK08291 209 -EPILKAEW---LHPGLHV 223 (330)
T ss_pred -CcEecHHH---cCCCceE
Confidence 34555543 5777654
No 295
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.82 E-value=0.033 Score=46.51 Aligned_cols=59 Identities=12% Similarity=0.263 Sum_probs=44.4
Q ss_pred EEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeC----CCCCHHHHHHHhc
Q 006212 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVD----EEPNQDSLKEIGK 620 (656)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D----~~~~~e~l~~L~~ 620 (656)
.+.+..+|+||++++|+.+|.++++||....+... ++..+..+.+. .+.+++.+++|++
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~--~~~~~d~f~v~~~~~~~~~~~~~~~l~~ 65 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQ--GDMAVNVFYVTDANGNPVDPKTIEAVRQ 65 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecC--CCeEEEEEEEECCCCCcCCHHHHHHHHH
Confidence 56778899999999999999999999999988754 34666666652 2234456666654
No 296
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=95.82 E-value=0.23 Score=54.01 Aligned_cols=64 Identities=22% Similarity=0.327 Sum_probs=49.2
Q ss_pred ccCCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCC---ChhH-------HHHcCC--ee-cCHHHHhccCCEEEE
Q 006212 226 SLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA---PADK-------ARAVGV--EL-VSFDQALATADFISL 289 (656)
Q Consensus 226 ~l~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~---~~~~-------a~~~g~--~~-~~l~ell~~aDvV~l 289 (656)
.+.|++|+|||= .++..+++..+..+|++|..+.|.. +.+. +...|. .. .++++.+++||+|..
T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~ 228 (338)
T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYT 228 (338)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEE
Confidence 588999999997 5788888888999999999988753 2111 122353 32 489999999999988
No 297
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=95.81 E-value=0.024 Score=61.59 Aligned_cols=30 Identities=23% Similarity=0.501 Sum_probs=25.5
Q ss_pred EEEEEecChhHHHHHHHHhcC-CCEEEEE-CC
Q 006212 231 TLAVMGFGKVGSEVARRAKGL-GMNVIAH-DP 260 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~-G~~Vi~~-d~ 260 (656)
+|||+|+|+||+.+++.+... ++++.+. |+
T Consensus 3 kVaI~G~GrIGr~va~al~~~~d~eLvav~d~ 34 (341)
T PRK04207 3 KVGVNGYGTIGKRVADAVAAQPDMELVGVAKT 34 (341)
T ss_pred EEEEECCCHHHHHHHHHHhcCCCcEEEEEECC
Confidence 799999999999999998854 7898874 53
No 298
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=95.80 E-value=0.032 Score=61.39 Aligned_cols=108 Identities=25% Similarity=0.373 Sum_probs=74.0
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC---------h-----------hHHHHcCCeecCHHHHhc-
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP---------A-----------DKARAVGVELVSFDQALA- 282 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~---------~-----------~~a~~~g~~~~~l~ell~- 282 (656)
+..|.|+||.|=|+|+.|+..|+.+...|.+|+++|-... . ......|.+.++-++++.
T Consensus 202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~ 281 (411)
T COG0334 202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEV 281 (411)
T ss_pred CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccccc
Confidence 4559999999999999999999999988999998754322 0 111122445555566664
Q ss_pred cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 283 ~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
+||+.+=|. +.+.|+.+...++|-. +|+-.+-+++-.+. --..++.|.+
T Consensus 282 ~cDIl~PcA-----~~n~I~~~na~~l~ak-~V~EgAN~P~t~eA-~~i~~erGIl 330 (411)
T COG0334 282 DCDILIPCA-----LENVITEDNADQLKAK-IVVEGANGPTTPEA-DEILLERGIL 330 (411)
T ss_pred cCcEEcccc-----cccccchhhHHHhhhc-EEEeccCCCCCHHH-HHHHHHCCCE
Confidence 799887665 5667888888888766 77777777775332 2222355544
No 299
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=95.78 E-value=0.11 Score=56.30 Aligned_cols=65 Identities=26% Similarity=0.316 Sum_probs=50.1
Q ss_pred ccCCCEEEEEecC--hhHHHHHHHHhcCCCEEEEECCCC--Chh--------HHHHcCC--ee-cCHHHHhccCCEEEEc
Q 006212 226 SLVGKTLAVMGFG--KVGSEVARRAKGLGMNVIAHDPYA--PAD--------KARAVGV--EL-VSFDQALATADFISLH 290 (656)
Q Consensus 226 ~l~gktvGIIGlG--~IG~~vA~~lk~~G~~Vi~~d~~~--~~~--------~a~~~g~--~~-~~l~ell~~aDvV~l~ 290 (656)
.+.|++|++||-+ ++..+++..+..+|+++....|.. +.. .++..|. .. .++++.+++||+|..-
T Consensus 153 ~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd 232 (336)
T PRK03515 153 AFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD 232 (336)
T ss_pred CcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 5789999999976 689999999999999999987753 211 1233454 33 4899999999999884
No 300
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.78 E-value=0.0082 Score=52.00 Aligned_cols=62 Identities=23% Similarity=0.198 Sum_probs=45.2
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCC---C-HHHHHHHhcCC
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEP---N-QDSLKEIGKVP 622 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~---~-~e~l~~L~~~~ 622 (656)
+.+.+..+|+||+++.|++.|+++|+||.+++... .++.-.|.+.++-+. + .++.+.|..+.
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~--~~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~ 67 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTI--MDGYFTMIMIVDISESNLDFAELQEELEELG 67 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHh--hCCccEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 35667789999999999999999999999998865 345666666655442 2 34555555554
No 301
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=95.77 E-value=0.026 Score=61.42 Aligned_cols=85 Identities=18% Similarity=0.321 Sum_probs=56.1
Q ss_pred CEEEEEec-ChhHHHHHHHHhcC-CCEEEE-ECCCC--ChhHHHHc----C---Cee--cCHHHHhccCCEEEEccCCCc
Q 006212 230 KTLAVMGF-GKVGSEVARRAKGL-GMNVIA-HDPYA--PADKARAV----G---VEL--VSFDQALATADFISLHMPLNP 295 (656)
Q Consensus 230 ktvGIIGl-G~IG~~vA~~lk~~-G~~Vi~-~d~~~--~~~~a~~~----g---~~~--~~l~ell~~aDvV~l~~Plt~ 295 (656)
++|+|+|. |.+|+.+++.|..+ +.++.. ++... ........ + ..+ .+.++++.++|+|++|+|..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~- 79 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG- 79 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch-
Confidence 47999998 99999999999987 778874 45432 11111111 1 112 25667767899999999943
Q ss_pred cccccccHHHHhc-CCCCcEEEEcCC
Q 006212 296 TTSKIFNDETFAK-MKKGVRIVNVAR 320 (656)
Q Consensus 296 ~T~~li~~~~l~~-mK~gailINvaR 320 (656)
. ..+.... .+.|+.+||.+.
T Consensus 80 ~-----s~~~~~~~~~~G~~VIDlS~ 100 (346)
T TIGR01850 80 V-----SAELAPELLAAGVKVIDLSA 100 (346)
T ss_pred H-----HHHHHHHHHhCCCEEEeCCh
Confidence 2 2333332 367899999984
No 302
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.73 E-value=0.025 Score=64.34 Aligned_cols=66 Identities=21% Similarity=0.196 Sum_probs=50.6
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec---CHHHHhccCCEEEEccC
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV---SFDQALATADFISLHMP 292 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~---~l~ell~~aDvV~l~~P 292 (656)
+.|+++.|+|+|.+|.+.++.|+..|.+|+++|... ....+++.|+... ...+.++++|+|+..-.
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpG 79 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPG 79 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCC
Confidence 468999999999999999999999999999999653 2233455677553 23456778998877653
No 303
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=95.73 E-value=0.028 Score=54.22 Aligned_cols=71 Identities=10% Similarity=0.186 Sum_probs=58.5
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCC-CHHHHHHHhcCCCccEEEEEe
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEP-NQDSLKEIGKVPAIEEYTLLH 631 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~-~~e~l~~L~~~~~V~~v~~v~ 631 (656)
|-+...++||++..++.+++++|.||...|.+-.+.|..++..+++..-. .+.++++++..+-|.+++...
T Consensus 5 lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi~d~e~l~~~lks~d~v~ev~i~~ 76 (218)
T COG1707 5 LSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGIDDFEKLLERLKSFDYVIEVEIHR 76 (218)
T ss_pred eEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCCCCHHHHHHHhhccceEEEeeecc
Confidence 33456789999999999999999999999998877788899888888764 457888888888777766553
No 304
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.72 E-value=0.024 Score=60.37 Aligned_cols=92 Identities=20% Similarity=0.307 Sum_probs=58.6
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-Ch-hHHHHcCCeec--C------HHHHhccCCEEEEccCC
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PA-DKARAVGVELV--S------FDQALATADFISLHMPL 293 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~-~~a~~~g~~~~--~------l~ell~~aDvV~l~~Pl 293 (656)
+.. -|+.+||+|+|-+|.--.+.+|+|||+|+++|... .. +..+.+|.+.. + .+++...-|.++-+++.
T Consensus 178 g~~-pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~ 256 (360)
T KOG0023|consen 178 GLG-PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSN 256 (360)
T ss_pred CCC-CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeee
Confidence 444 79999999999999988888999999999999875 33 34455776421 1 23445555666555542
Q ss_pred CccccccccHHHHhcCCCCcEEEEcC
Q 006212 294 NPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 294 t~~T~~li~~~~l~~mK~gailINva 319 (656)
- ..+-+ +..+..||++..+|-++
T Consensus 257 ~--a~~~~-~~~~~~lk~~Gt~V~vg 279 (360)
T KOG0023|consen 257 L--AEHAL-EPLLGLLKVNGTLVLVG 279 (360)
T ss_pred c--cccch-HHHHHHhhcCCEEEEEe
Confidence 2 12222 23444456655555543
No 305
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=95.72 E-value=0.16 Score=55.16 Aligned_cols=94 Identities=17% Similarity=0.206 Sum_probs=64.2
Q ss_pred ccCCCEEEEEecC--hhHHHHHHHHhcCCCEEEEECCCC--Ch-h-------HHHHcCCe--e-cCHHHHhccCCEEEEc
Q 006212 226 SLVGKTLAVMGFG--KVGSEVARRAKGLGMNVIAHDPYA--PA-D-------KARAVGVE--L-VSFDQALATADFISLH 290 (656)
Q Consensus 226 ~l~gktvGIIGlG--~IG~~vA~~lk~~G~~Vi~~d~~~--~~-~-------~a~~~g~~--~-~~l~ell~~aDvV~l~ 290 (656)
.+.|++|++||-+ ++.++++..+..+|++|....|.. +. + .+...|.. . .++++.+++||+|..-
T Consensus 152 ~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~ 231 (332)
T PRK04284 152 PYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTD 231 (332)
T ss_pred CcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEC
Confidence 3789999999975 889999999999999999988752 21 1 12234542 2 4899999999999884
Q ss_pred cCC--Cc--c---------ccccccHHHHhcCC-CCcEEEEcC
Q 006212 291 MPL--NP--T---------TSKIFNDETFAKMK-KGVRIVNVA 319 (656)
Q Consensus 291 ~Pl--t~--~---------T~~li~~~~l~~mK-~gailINva 319 (656)
.=. .. + -...++++.++.+| |+++|.-|.
T Consensus 232 ~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHpl 274 (332)
T PRK04284 232 VWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCL 274 (332)
T ss_pred CcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECCC
Confidence 210 00 0 12335666677665 477777765
No 306
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=95.68 E-value=0.18 Score=54.03 Aligned_cols=63 Identities=19% Similarity=0.254 Sum_probs=48.6
Q ss_pred ccCCCEEEEEec---ChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCe-ecCHHHHhccCCEEEEc
Q 006212 226 SLVGKTLAVMGF---GKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVE-LVSFDQALATADFISLH 290 (656)
Q Consensus 226 ~l~gktvGIIGl---G~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~-~~~l~ell~~aDvV~l~ 290 (656)
.+.|++|++||- +++..+++..+..+|+++....|.. ..... ..+. ..++++.+++||+|..-
T Consensus 153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~--~~~~~~~d~~ea~~~aDvvyt~ 220 (305)
T PRK00856 153 RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGM--PEYGVHTDLDEVIEDADVVMML 220 (305)
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccc--cceEEECCHHHHhCCCCEEEEC
Confidence 378999999988 5899999999999999999988754 11111 1122 34899999999999874
No 307
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.58 E-value=0.035 Score=61.93 Aligned_cols=71 Identities=23% Similarity=0.194 Sum_probs=54.4
Q ss_pred ccccCCCEEEEEec----------ChhHHHHHHHHhcCC-CEEEEECCCCChhHH-HHcCCeecCHHHHhccCCEEEEcc
Q 006212 224 GVSLVGKTLAVMGF----------GKVGSEVARRAKGLG-MNVIAHDPYAPADKA-RAVGVELVSFDQALATADFISLHM 291 (656)
Q Consensus 224 g~~l~gktvGIIGl----------G~IG~~vA~~lk~~G-~~Vi~~d~~~~~~~a-~~~g~~~~~l~ell~~aDvV~l~~ 291 (656)
+.++.|++|+|+|+ ..-...+++.|+..| .+|.+|||....... ....+...++++.++.||.|++++
T Consensus 315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t 394 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLV 394 (415)
T ss_pred ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECC
Confidence 56789999999998 446778999999985 999999998643211 111234468999999999999999
Q ss_pred CCC
Q 006212 292 PLN 294 (656)
Q Consensus 292 Plt 294 (656)
+-.
T Consensus 395 ~~~ 397 (415)
T PRK11064 395 DHS 397 (415)
T ss_pred CCH
Confidence 843
No 308
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.56 E-value=0.024 Score=56.95 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=33.6
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCC
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~ 261 (656)
..|.+++|.|+|+|.+|..+|+.|...|. ++..+|+.
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 46899999999999999999999999997 78888875
No 309
>PRK06223 malate dehydrogenase; Reviewed
Probab=95.54 E-value=0.06 Score=57.31 Aligned_cols=62 Identities=19% Similarity=0.403 Sum_probs=43.7
Q ss_pred CEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCChhHHHHc---------C--Cee---cCHHHHhccCCEEEEccC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKARAV---------G--VEL---VSFDQALATADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~~~a~~~---------g--~~~---~~l~ell~~aDvV~l~~P 292 (656)
++|+|||.|.+|..+|..+...|. +|..+|........... + ... .+. +.+++||+|++++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~ 79 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG 79 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence 589999999999999999986654 99999986532211111 1 111 245 45899999999864
No 310
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=95.53 E-value=0.029 Score=60.82 Aligned_cols=61 Identities=30% Similarity=0.395 Sum_probs=46.3
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh--hHHHHcCC--eec---CHHHHhccCCEEEE
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAVGV--ELV---SFDQALATADFISL 289 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~--~~a~~~g~--~~~---~l~ell~~aDvV~l 289 (656)
++||||||-|..|+-++..++.+|++|++.||.... ......-+ .+. .+.++++.||+|+.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 479999999999999999999999999999987622 11111111 111 47889999999976
No 311
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=95.50 E-value=0.035 Score=57.89 Aligned_cols=111 Identities=19% Similarity=0.229 Sum_probs=67.9
Q ss_pred EEEEec-ChhHHHHHHHHhcCC----CEEEEECCCCCh-h-HHH-------Hc-CCe--e-cCHHHHhccCCEEEEccCC
Q 006212 232 LAVMGF-GKVGSEVARRAKGLG----MNVIAHDPYAPA-D-KAR-------AV-GVE--L-VSFDQALATADFISLHMPL 293 (656)
Q Consensus 232 vGIIGl-G~IG~~vA~~lk~~G----~~Vi~~d~~~~~-~-~a~-------~~-g~~--~-~~l~ell~~aDvV~l~~Pl 293 (656)
|+|||. |.+|..+|..+...| .+|..||..... + ... .. ... . .++.+.+++||+|+++.-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 589999 999999999988666 789999976421 1 111 11 112 1 2567899999999996531
Q ss_pred Ccccccc------------cc--HHHHhcCCCCcEEEEcCCCchhc--HHHHHHh--HhcCCeEEEE-eec
Q 006212 294 NPTTSKI------------FN--DETFAKMKKGVRIVNVARGGVID--EEALVRA--LDSGVVAQAA-LDV 345 (656)
Q Consensus 294 t~~T~~l------------i~--~~~l~~mK~gailINvaRg~ivd--e~aL~~a--L~~g~i~gA~-lDV 345 (656)
+...++ +. .+.+.+..|+++++|++ ..+| ...+.+. +...++.|.+ +|.
T Consensus 81 -~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t--NP~d~~t~~~~~~sg~~~~kviG~~~ld~ 148 (263)
T cd00650 81 -GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS--NPVDIITYLVWRYSGLPKEKVIGLGTLDP 148 (263)
T ss_pred -CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--CcHHHHHHHHHHHhCCCchhEEEeecchH
Confidence 111111 10 12233355889999995 4444 2233333 3456677777 664
No 312
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=95.50 E-value=0.2 Score=54.33 Aligned_cols=94 Identities=21% Similarity=0.279 Sum_probs=63.0
Q ss_pred ccCCCEEEEEecC--hhHHHHHHHHhcCCCEEEEECCCC--Chh--------HHHHcCCe--e-cCHHHHhccCCEEEEc
Q 006212 226 SLVGKTLAVMGFG--KVGSEVARRAKGLGMNVIAHDPYA--PAD--------KARAVGVE--L-VSFDQALATADFISLH 290 (656)
Q Consensus 226 ~l~gktvGIIGlG--~IG~~vA~~lk~~G~~Vi~~d~~~--~~~--------~a~~~g~~--~-~~l~ell~~aDvV~l~ 290 (656)
.+.|+||++||-+ ++..+++..+..+|++|....|.. +.+ .++..|.. . .++++++++||+|..-
T Consensus 152 ~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 231 (331)
T PRK02102 152 PLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTD 231 (331)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 3789999999997 788999999999999999887753 211 12334543 2 4899999999999884
Q ss_pred cCC--Ccc----------ccccccHHHHh-cCCCCcEEEEcC
Q 006212 291 MPL--NPT----------TSKIFNDETFA-KMKKGVRIVNVA 319 (656)
Q Consensus 291 ~Pl--t~~----------T~~li~~~~l~-~mK~gailINva 319 (656)
+=. ..+ ...-++++.++ .+|+++++.-|.
T Consensus 232 ~w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~l 273 (331)
T PRK02102 232 VWVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHCL 273 (331)
T ss_pred CcccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECCC
Confidence 310 000 12234555555 356666666654
No 313
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=95.50 E-value=0.27 Score=52.82 Aligned_cols=66 Identities=21% Similarity=0.402 Sum_probs=50.9
Q ss_pred ccCCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCCC-h-------hHHHHcC-Cee-cCHHHHhccCCEEEEcc
Q 006212 226 SLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAP-A-------DKARAVG-VEL-VSFDQALATADFISLHM 291 (656)
Q Consensus 226 ~l~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~~-~-------~~a~~~g-~~~-~~l~ell~~aDvV~l~~ 291 (656)
.+.|+||++||- +++..+++..+..+|++|....|... . +.+++.| +.. .++++.++.||+|..-+
T Consensus 150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d~ 226 (311)
T PRK14804 150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTDT 226 (311)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEeee
Confidence 478999999998 68999999999999999999988542 1 1122233 333 48999999999998843
No 314
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.49 E-value=0.034 Score=49.96 Aligned_cols=84 Identities=20% Similarity=0.434 Sum_probs=56.2
Q ss_pred EEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-----CHH---H-HhccCCEEEEccCCCccccccc
Q 006212 232 LAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-----SFD---Q-ALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 232 vGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-----~l~---e-ll~~aDvV~l~~Plt~~T~~li 301 (656)
+-|+|+|.+|+.+++.|+..+.+|++.|... ..+.+.+.|+..+ +.+ + -+.+||.|+++++... ..+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~--~n~~ 78 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDE--ENLL 78 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHH--HHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHH--HHHH
Confidence 5699999999999999999777999999875 3455666776543 222 2 3689999999998443 2222
Q ss_pred cHHHHhcCCCCcEEEE
Q 006212 302 NDETFAKMKKGVRIVN 317 (656)
Q Consensus 302 ~~~~l~~mK~gailIN 317 (656)
-...+..+-+...++-
T Consensus 79 ~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 79 IALLARELNPDIRIIA 94 (116)
T ss_dssp HHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHCCCCeEEE
Confidence 2334444455555543
No 315
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.45 E-value=0.054 Score=57.27 Aligned_cols=69 Identities=13% Similarity=0.113 Sum_probs=49.5
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCCh--hHHHHcC----Ceec----CHHHHhccCCEEEEccCCC
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPA--DKARAVG----VELV----SFDQALATADFISLHMPLN 294 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~--~~a~~~g----~~~~----~l~ell~~aDvV~l~~Plt 294 (656)
.+.||++.|||.|-+|++++..|...|+ +|.+++|.... ..+...+ +... ++.+.+.++|+|+.|+|..
T Consensus 122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence 3678999999999999999999999997 69999987421 2222221 1111 2335567899999999854
No 316
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=95.44 E-value=0.051 Score=46.07 Aligned_cols=69 Identities=16% Similarity=0.243 Sum_probs=44.7
Q ss_pred EEEEEecCCCCchhhHHhhhhcCCccccceEeeeecc-CccEEEEEEeCCCC-CH---HHHHHHhcCCCccEEEEE
Q 006212 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFR-RNHGIMAIGVDEEP-NQ---DSLKEIGKVPAIEEYTLL 630 (656)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~-gg~al~~i~~D~~~-~~---e~l~~L~~~~~V~~v~~v 630 (656)
.+.+..+|+||.++.+..++++++|||..+....... ...-...++++... .+ ++++.|++. ..+++++
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~--~~~~~~l 76 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRL--TEFVKVL 76 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHh--CCeEEEe
Confidence 4566778999999999999999999999997644322 22234456666542 23 345555542 3344443
No 317
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=95.43 E-value=0.33 Score=53.21 Aligned_cols=65 Identities=25% Similarity=0.280 Sum_probs=47.9
Q ss_pred ccCCCEEEEEecC--------hhHHHHHHHHhcCCCEEEEECCCC---Chh---H----HHHcCCe--e-cCHHHHhccC
Q 006212 226 SLVGKTLAVMGFG--------KVGSEVARRAKGLGMNVIAHDPYA---PAD---K----ARAVGVE--L-VSFDQALATA 284 (656)
Q Consensus 226 ~l~gktvGIIGlG--------~IG~~vA~~lk~~G~~Vi~~d~~~---~~~---~----a~~~g~~--~-~~l~ell~~a 284 (656)
.|.|+||+|+|.| ++..+++..+..|||+|....|.. ..+ . +++.|.. . .++++.++++
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a 246 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA 246 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 3789999999853 445778888889999999988753 221 1 2344643 2 4899999999
Q ss_pred CEEEEc
Q 006212 285 DFISLH 290 (656)
Q Consensus 285 DvV~l~ 290 (656)
|+|..-
T Consensus 247 Dvvyt~ 252 (357)
T TIGR03316 247 DIVYPK 252 (357)
T ss_pred CEEEEC
Confidence 999885
No 318
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=95.41 E-value=0.3 Score=54.67 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=50.1
Q ss_pred ccCCCEEEEEecC---hhHHHHHHHHhcC-CCEEEEECCCC---Chh---HHHHcCCe--e-cCHHHHhccCCEEEEcc
Q 006212 226 SLVGKTLAVMGFG---KVGSEVARRAKGL-GMNVIAHDPYA---PAD---KARAVGVE--L-VSFDQALATADFISLHM 291 (656)
Q Consensus 226 ~l~gktvGIIGlG---~IG~~vA~~lk~~-G~~Vi~~d~~~---~~~---~a~~~g~~--~-~~l~ell~~aDvV~l~~ 291 (656)
.+.|+||++||-+ ++..+++..+..+ ||+|....|.. +.+ .+.+.|.. . .++++.+++||+|....
T Consensus 238 ~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~ 316 (429)
T PRK11891 238 IVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATR 316 (429)
T ss_pred CcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 4789999999994 8999999988776 99999887753 222 23334543 2 48999999999998833
No 319
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=95.40 E-value=0.049 Score=57.67 Aligned_cols=61 Identities=15% Similarity=0.223 Sum_probs=47.6
Q ss_pred EEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCC---CCH-HHHHHHhc
Q 006212 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE---PNQ-DSLKEIGK 620 (656)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~---~~~-e~l~~L~~ 620 (656)
.|.+..+|+||+|++|++.|+++|+||.+++-.....++.=.|++.+|-+ .+. ++.+.+..
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~ 66 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKS 66 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence 46678899999999999999999999999998876666777788777743 233 44444555
No 320
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=95.38 E-value=0.32 Score=52.27 Aligned_cols=63 Identities=14% Similarity=0.227 Sum_probs=48.2
Q ss_pred cCCCEEEEEec---ChhHHHHHHHHhcCCC-EEEEECCCC-ChhHHHHcCCee-cCHHHHhccCCEEEE
Q 006212 227 LVGKTLAVMGF---GKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVEL-VSFDQALATADFISL 289 (656)
Q Consensus 227 l~gktvGIIGl---G~IG~~vA~~lk~~G~-~Vi~~d~~~-~~~~a~~~g~~~-~~l~ell~~aDvV~l 289 (656)
+.|++|+++|= +++..+++..+..+|+ +|....|.. .++......+.. .++++.++.||+|..
T Consensus 155 l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~ 223 (310)
T PRK13814 155 WNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVT 223 (310)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEE
Confidence 67999999998 5999999999999999 999888754 111111112333 489999999999987
No 321
>PLN02342 ornithine carbamoyltransferase
Probab=95.36 E-value=0.38 Score=52.50 Aligned_cols=94 Identities=20% Similarity=0.212 Sum_probs=62.6
Q ss_pred ccCCCEEEEEecC-hhHHHHHHHHhcCCCEEEEECCCC--C-hh---HHHHcC---Cee-cCHHHHhccCCEEEEcc---
Q 006212 226 SLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYA--P-AD---KARAVG---VEL-VSFDQALATADFISLHM--- 291 (656)
Q Consensus 226 ~l~gktvGIIGlG-~IG~~vA~~lk~~G~~Vi~~d~~~--~-~~---~a~~~g---~~~-~~l~ell~~aDvV~l~~--- 291 (656)
.+.|+||++||=+ ++-.+++..+..+|++|....|.. + .+ .+.+.| +.. .++++.+++||+|..-.
T Consensus 191 ~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s 270 (348)
T PLN02342 191 RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWAS 270 (348)
T ss_pred CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCccc
Confidence 4789999999974 577888888889999999887753 2 11 233334 333 48999999999998853
Q ss_pred CCCcc---------ccccccHHHHhcCCCCcEEEEcC
Q 006212 292 PLNPT---------TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 292 Plt~~---------T~~li~~~~l~~mK~gailINva 319 (656)
-...+ ....++++.++.+|++++|.-|.
T Consensus 271 ~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHpL 307 (348)
T PLN02342 271 MGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCL 307 (348)
T ss_pred cccchhhHHHHHhccCCccCHHHHhccCCCcEEeCCC
Confidence 00100 11345666666666666666664
No 322
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=95.36 E-value=0.19 Score=54.21 Aligned_cols=149 Identities=18% Similarity=0.246 Sum_probs=102.4
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-hHH---HHcCCe---ecCHHHHh---ccCCEEEEccCCCccccc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKA---RAVGVE---LVSFDQAL---ATADFISLHMPLNPTTSK 299 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~a---~~~g~~---~~~l~ell---~~aDvV~l~~Plt~~T~~ 299 (656)
..||.|||+.||+.++..+...|+.|.+|++..+. +.. ++.|.. ..++++++ +.-..|++.+-.-.-...
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~ 86 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ 86 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence 36899999999999999999999999999997632 221 122322 34788874 566777776653333333
Q ss_pred cccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHH
Q 006212 300 IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEG 379 (656)
Q Consensus 300 li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~ 379 (656)
+| ++....|.+|-+|||-+-..--|...-.+.|....|...|.-|.+.|--+...| -+ -| +-+.+++.+
T Consensus 87 ~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP-----Sl--Mp---Gg~~~Awp~ 155 (487)
T KOG2653|consen 87 FI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP-----SL--MP---GGSKEAWPH 155 (487)
T ss_pred HH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC-----cc--CC---CCChHHHHH
Confidence 34 556677999999999998887787777777887777788999999884322222 22 22 455677776
Q ss_pred HHHHHHHHHHH
Q 006212 380 VAIEIAEAVVG 390 (656)
Q Consensus 380 ~~~~~~~~i~~ 390 (656)
+ ..+.+.|..
T Consensus 156 i-k~ifq~iaa 165 (487)
T KOG2653|consen 156 I-KDIFQKIAA 165 (487)
T ss_pred H-HHHHHHHHH
Confidence 5 344455533
No 323
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.30 E-value=0.087 Score=56.66 Aligned_cols=65 Identities=17% Similarity=0.198 Sum_probs=46.1
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC--EEEEECCCCChhH--HHHc--------CCee-cCHHHHhccCCEEEEccC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPADK--ARAV--------GVEL-VSFDQALATADFISLHMP 292 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~--~Vi~~d~~~~~~~--a~~~--------g~~~-~~l~ell~~aDvV~l~~P 292 (656)
.+++|+|||.|.+|..+|..+...|. ++..+|.+..... +.++ .+.. .+-.+.+++||+|+++.-
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag 82 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAG 82 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecC
Confidence 46799999999999999999987776 8999998653221 1111 1111 122355899999999764
No 324
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=95.26 E-value=0.07 Score=61.44 Aligned_cols=70 Identities=24% Similarity=0.336 Sum_probs=47.0
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh--hHHHHcCCeecCHHHH---h-ccCCEEEEccCC
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAVGVELVSFDQA---L-ATADFISLHMPL 293 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~--~~a~~~g~~~~~l~el---l-~~aDvV~l~~Pl 293 (656)
+..+.||++.|+|.|-+|++++..|...|++|+++++.... ..+...+....++++. . ..+|+|+.++|.
T Consensus 374 ~~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~v 449 (529)
T PLN02520 374 GSPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSV 449 (529)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccC
Confidence 34578999999999999999999999999999999986421 1222223222333322 1 345666666663
No 325
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.25 E-value=0.036 Score=56.23 Aligned_cols=90 Identities=19% Similarity=0.169 Sum_probs=67.4
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhH---HHHcCCee----cCHHHHhccCCEEEEccCCCcc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK---ARAVGVEL----VSFDQALATADFISLHMPLNPT 296 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~---a~~~g~~~----~~l~ell~~aDvV~l~~Plt~~ 296 (656)
..+|.||+|.|||-|.+|..=|+.+...|.+|+++.|....+. ....++.. .+.+++ ..+++|+.+++...
T Consensus 7 ~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~-~~~~lviaAt~d~~- 84 (210)
T COG1648 7 FLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDL-DDAFLVIAATDDEE- 84 (210)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhhh-cCceEEEEeCCCHH-
Confidence 4579999999999999999999999999999999998863322 12222222 233444 44999999988443
Q ss_pred ccccccHHHHhcCCCCcEEEEcC
Q 006212 297 TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 297 T~~li~~~~l~~mK~gailINva 319 (656)
+|+..+..+++-.+++|+.
T Consensus 85 ----ln~~i~~~a~~~~i~vNv~ 103 (210)
T COG1648 85 ----LNERIAKAARERRILVNVV 103 (210)
T ss_pred ----HHHHHHHHHHHhCCceecc
Confidence 6777778788888999985
No 326
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.25 E-value=0.082 Score=57.05 Aligned_cols=65 Identities=17% Similarity=0.298 Sum_probs=46.1
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCChhHHHHc---------C----Cee-cCHHHHhccCCEEEEcc
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKARAV---------G----VEL-VSFDQALATADFISLHM 291 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~~~a~~~---------g----~~~-~~l~ell~~aDvV~l~~ 291 (656)
+..++|+|||.|.+|..+|..+...|. +|..+|.......+..+ + +.. .+. +.+++||+|+++.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 445799999999999999999887774 89999976532211111 1 122 255 4679999999977
Q ss_pred C
Q 006212 292 P 292 (656)
Q Consensus 292 P 292 (656)
-
T Consensus 83 g 83 (321)
T PTZ00082 83 G 83 (321)
T ss_pred C
Confidence 3
No 327
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=95.19 E-value=0.04 Score=57.49 Aligned_cols=63 Identities=24% Similarity=0.332 Sum_probs=41.8
Q ss_pred CEEEEEec-ChhHHHHHHHHhcC-CCEEEE-ECCCCCh-hHHHHcCCe-ecCHHHHhccCCEEEEccC
Q 006212 230 KTLAVMGF-GKVGSEVARRAKGL-GMNVIA-HDPYAPA-DKARAVGVE-LVSFDQALATADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGl-G~IG~~vA~~lk~~-G~~Vi~-~d~~~~~-~~a~~~g~~-~~~l~ell~~aDvV~l~~P 292 (656)
.+|+|+|+ |+||+.+++.+... ++++.+ +|+.... ......++. +.+++++++.+|+|+.++|
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~ 69 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT 69 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC
Confidence 47999998 99999999998854 788776 6765421 111222332 2367777766777766654
No 328
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.18 E-value=0.031 Score=57.18 Aligned_cols=63 Identities=25% Similarity=0.382 Sum_probs=44.9
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-hHHHH--cCCeec-----C---HHHH-hccCCEEEEccC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA--VGVELV-----S---FDQA-LATADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~a~~--~g~~~~-----~---l~el-l~~aDvV~l~~P 292 (656)
+++.|+|+|..|+.+|+.|...|+.|+..|..... ....+ .+...+ + |.++ +.++|.++.++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~ 75 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATG 75 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeC
Confidence 57999999999999999999999999999987522 22122 333211 1 4444 677777777766
No 329
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.17 E-value=0.077 Score=56.29 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=33.3
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCE-EEEECCCC
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMN-VIAHDPYA 262 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~-Vi~~d~~~ 262 (656)
.+.||++.|+|.|.+|++++..|...|.+ |.+++++.
T Consensus 123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 46789999999999999999999999986 99998864
No 330
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.15 E-value=0.043 Score=61.75 Aligned_cols=64 Identities=31% Similarity=0.405 Sum_probs=47.8
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHcCCeecCH-HHHhccCCEEEE
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELVSF-DQALATADFISL 289 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~g~~~~~l-~ell~~aDvV~l 289 (656)
++.|++|.|+|+|.+|.++|+.|+..|++|.++|.+.. .......|+..... .+-+.++|+|+.
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~ 71 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVL 71 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEE
Confidence 36789999999999999999999999999999997642 22234457654322 233578998865
No 331
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=95.14 E-value=0.038 Score=58.73 Aligned_cols=50 Identities=12% Similarity=0.159 Sum_probs=41.1
Q ss_pred ccEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeC
Q 006212 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVD 607 (656)
Q Consensus 558 ~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D 607 (656)
.+.|.+..+|+||+|++|++.|+++|+||.+++-......+.-+|+++++
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~ 58 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFH 58 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEE
Confidence 34677789999999999999999999999999886444556667777766
No 332
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.14 E-value=0.068 Score=59.80 Aligned_cols=110 Identities=22% Similarity=0.303 Sum_probs=68.3
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh------hHHHHcCCeec---CHHHHhccCCEEEEccCCCcc
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA------DKARAVGVELV---SFDQALATADFISLHMPLNPT 296 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~------~~a~~~g~~~~---~l~ell~~aDvV~l~~Plt~~ 296 (656)
.+.+|++.|+|.|.+|.++|+.|...|++|.++|+.... +.....|+... ..++....+|+|+.+.-..+.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~ 81 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD 81 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence 467999999999999999999999999999999986421 11223465432 244567789999887654333
Q ss_pred ccccc----------cH-HHHhcCCCCcEEEEcC-CCchhcHHHHHHhHhc
Q 006212 297 TSKIF----------ND-ETFAKMKKGVRIVNVA-RGGVIDEEALVRALDS 335 (656)
Q Consensus 297 T~~li----------~~-~~l~~mK~gailINva-Rg~ivde~aL~~aL~~ 335 (656)
...+. .. +.+....+..++-=+| .|+--..+-|...|+.
T Consensus 82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~ 132 (450)
T PRK14106 82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN 132 (450)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 22111 11 1122222233333333 5777666666666654
No 333
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=95.12 E-value=0.026 Score=52.22 Aligned_cols=61 Identities=20% Similarity=0.384 Sum_probs=42.5
Q ss_pred EEEEEec-ChhHHHHHHHHhc-CCCEEEE-ECCCCC----hhHHH-----HcCCee-cCHHHHhccCCEEEEcc
Q 006212 231 TLAVMGF-GKVGSEVARRAKG-LGMNVIA-HDPYAP----ADKAR-----AVGVEL-VSFDQALATADFISLHM 291 (656)
Q Consensus 231 tvGIIGl-G~IG~~vA~~lk~-~G~~Vi~-~d~~~~----~~~a~-----~~g~~~-~~l~ell~~aDvV~l~~ 291 (656)
+|+|+|+ |+||+.+++.+.. -++++.+ +|+..+ .+... ..|+.. .++++++.++|+|+-..
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT 75 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT 75 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC
Confidence 7999999 9999999999997 6898665 565541 11111 223433 37999999999998766
No 334
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=95.11 E-value=0.079 Score=56.57 Aligned_cols=86 Identities=17% Similarity=0.229 Sum_probs=59.6
Q ss_pred CCEEEEEecChhHHHHHHHHhcC-CCEEEE-ECCCCC---hhHHHHcCCee--cCHHHHhc-----cCCEEEEccCCCcc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGL-GMNVIA-HDPYAP---ADKARAVGVEL--VSFDQALA-----TADFISLHMPLNPT 296 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~-G~~Vi~-~d~~~~---~~~a~~~g~~~--~~l~ell~-----~aDvV~l~~Plt~~ 296 (656)
..++||||.|.||...+..+... ++++.+ +|++.. ...+++.|+.. .+++++++ +.|+|+.++|..
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~-- 81 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAG-- 81 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHH--
Confidence 45799999999999977777644 677765 555442 24577788864 37899884 589999999832
Q ss_pred ccccccHHHHhcCCCCcEEEEcC
Q 006212 297 TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 297 T~~li~~~~l~~mK~gailINva 319 (656)
.. -+......+.|+.+||-.
T Consensus 82 ~H---~e~a~~a~eaGk~VID~s 101 (302)
T PRK08300 82 AH---VRHAAKLREAGIRAIDLT 101 (302)
T ss_pred HH---HHHHHHHHHcCCeEEECC
Confidence 11 122222357788888876
No 335
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=95.06 E-value=0.49 Score=51.40 Aligned_cols=94 Identities=20% Similarity=0.257 Sum_probs=63.8
Q ss_pred ccCCCEEEEEecC--hhHHHHHHHHhcCCCEEEEECCCC--Chh----H----HHHcCCe--e-cCHHHHhccCCEEEEc
Q 006212 226 SLVGKTLAVMGFG--KVGSEVARRAKGLGMNVIAHDPYA--PAD----K----ARAVGVE--L-VSFDQALATADFISLH 290 (656)
Q Consensus 226 ~l~gktvGIIGlG--~IG~~vA~~lk~~G~~Vi~~d~~~--~~~----~----a~~~g~~--~-~~l~ell~~aDvV~l~ 290 (656)
.+.|++|++||-+ ++..+++..+..+|++|....|.. +.+ . +...|.. . .++++.+++||+|..-
T Consensus 153 ~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~ 232 (334)
T PRK12562 153 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTD 232 (334)
T ss_pred CcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 4789999999986 789999999999999999887753 211 1 2233543 2 4899999999999885
Q ss_pred cC--CC--cc---------ccccccHHHHhcC-CCCcEEEEcC
Q 006212 291 MP--LN--PT---------TSKIFNDETFAKM-KKGVRIVNVA 319 (656)
Q Consensus 291 ~P--lt--~~---------T~~li~~~~l~~m-K~gailINva 319 (656)
.= .. .+ -..-++.+.++.. |+++++.-|.
T Consensus 233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcL 275 (334)
T PRK12562 233 VWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCL 275 (334)
T ss_pred CccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCC
Confidence 31 00 00 1223466666664 6777777774
No 336
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=95.06 E-value=0.097 Score=55.55 Aligned_cols=85 Identities=16% Similarity=0.250 Sum_probs=57.9
Q ss_pred CEEEEEecChhHHHHHHHHhc-CCCEEEE-ECCCCC---hhHHHHcCCee--cCHHHHhc--cCCEEEEccCCCcccccc
Q 006212 230 KTLAVMGFGKVGSEVARRAKG-LGMNVIA-HDPYAP---ADKARAVGVEL--VSFDQALA--TADFISLHMPLNPTTSKI 300 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~-~G~~Vi~-~d~~~~---~~~a~~~g~~~--~~l~ell~--~aDvV~l~~Plt~~T~~l 300 (656)
.++||||.|+||...+..+.. -++++.+ +|++.. ...+++.|+.. .+.++++. +.|+|++++|.. +..
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~--~H~- 78 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAK--AHA- 78 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcH--HHH-
Confidence 379999999999998777764 3677765 565542 34567788753 37888885 688999999933 221
Q ss_pred ccHHHHhcCCCCcEEEEcC
Q 006212 301 FNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 301 i~~~~l~~mK~gailINva 319 (656)
+.....++.|..+++-.
T Consensus 79 --e~a~~al~aGk~VIdek 95 (285)
T TIGR03215 79 --RHARLLAELGKIVIDLT 95 (285)
T ss_pred --HHHHHHHHcCCEEEECC
Confidence 22233356777777654
No 337
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.02 E-value=0.11 Score=55.07 Aligned_cols=71 Identities=24% Similarity=0.409 Sum_probs=49.4
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCC-hhHH----HHcC------CeecCHH------HHhccCC
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAP-ADKA----RAVG------VELVSFD------QALATAD 285 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~-~~~a----~~~g------~~~~~l~------ell~~aD 285 (656)
+..+.||++.|+|.|-.+++++..+...|. +|.+++|... .+++ ...+ +...+++ +.+.++|
T Consensus 119 ~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aD 198 (288)
T PRK12749 119 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASAD 198 (288)
T ss_pred CCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCC
Confidence 345789999999999999999999988886 8999998742 2222 2221 1223332 3456789
Q ss_pred EEEEccCCC
Q 006212 286 FISLHMPLN 294 (656)
Q Consensus 286 vV~l~~Plt 294 (656)
+|+.++|.-
T Consensus 199 ivINaTp~G 207 (288)
T PRK12749 199 ILTNGTKVG 207 (288)
T ss_pred EEEECCCCC
Confidence 998888853
No 338
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=95.01 E-value=0.12 Score=57.94 Aligned_cols=96 Identities=18% Similarity=0.257 Sum_probs=64.0
Q ss_pred ccccCCCEEEEEec----------ChhHHHHHHHHhcCCCEEEEECCCCChhHH-HHcCCeecCHHHHhccCCEEEEccC
Q 006212 224 GVSLVGKTLAVMGF----------GKVGSEVARRAKGLGMNVIAHDPYAPADKA-RAVGVELVSFDQALATADFISLHMP 292 (656)
Q Consensus 224 g~~l~gktvGIIGl----------G~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a-~~~g~~~~~l~ell~~aDvV~l~~P 292 (656)
+..+.|++|+|+|+ ..-+..+++.|+..|.+|.+|||+...+.. ...+....+ ...++.||.|++++.
T Consensus 309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~-~~~~~~ad~vvi~t~ 387 (425)
T PRK15182 309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPVS-EVKSSHYDAIIVAVG 387 (425)
T ss_pred CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccch-hhhhcCCCEEEEccC
Confidence 45689999999999 446788999999999999999998643322 223322111 224678999999998
Q ss_pred CCccccccccHHHHh-cCCCCcEEEEcCCCch
Q 006212 293 LNPTTSKIFNDETFA-KMKKGVRIVNVARGGV 323 (656)
Q Consensus 293 lt~~T~~li~~~~l~-~mK~gailINvaRg~i 323 (656)
- ++-+. ++-+.+. .||...+|+|+ |+-+
T Consensus 388 h-~~f~~-~~~~~~~~~~~~~~~iiD~-r~~~ 416 (425)
T PRK15182 388 H-QQFKQ-MGSEDIRGFGKDKHVLYDL-KYVL 416 (425)
T ss_pred C-HHhhc-CCHHHHHHhcCCCCEEEEC-CCCC
Confidence 3 33332 3444443 45545688894 5443
No 339
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=94.99 E-value=0.89 Score=48.11 Aligned_cols=183 Identities=17% Similarity=0.147 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhcC----CC-------EEEEE
Q 006212 190 AAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGL----GM-------NVIAH 258 (656)
Q Consensus 190 vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~----G~-------~Vi~~ 258 (656)
+|=-+++-+++.+| ..|..|...+|.|+|.|.-|-.+|+.+... |+ +++.+
T Consensus 4 Ta~V~lAgllnAlk------------------~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~v 65 (279)
T cd05312 4 TAAVALAGLLAALR------------------ITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLV 65 (279)
T ss_pred HHHHHHHHHHHHHH------------------HhCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEE
Confidence 34456666676665 346788899999999999999999998865 77 78888
Q ss_pred CCCC-------Ch-----hHHHHcC-CeecCHHHHhc--cCCEEEEccCCCccccccccHHHHhcCC---CCcEEEEcCC
Q 006212 259 DPYA-------PA-----DKARAVG-VELVSFDQALA--TADFISLHMPLNPTTSKIFNDETFAKMK---KGVRIVNVAR 320 (656)
Q Consensus 259 d~~~-------~~-----~~a~~~g-~~~~~l~ell~--~aDvV~l~~Plt~~T~~li~~~~l~~mK---~gailINvaR 320 (656)
|.+- .. ..++... -...+|.|+++ .+|+++=+-- .-++++++.++.|. +..+|.=.+.
T Consensus 66 D~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~----~~g~ft~evv~~Ma~~~~~PIIFaLSN 141 (279)
T cd05312 66 DSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSG----VGGAFTEEVVRAMAKSNERPIIFALSN 141 (279)
T ss_pred cCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCC----CCCCCCHHHHHHHHhcCCCCEEEECCC
Confidence 8651 11 1122111 02348999999 8899876431 23689999999998 8899999986
Q ss_pred Cch---hcHHHHHHhHhcC-CeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHH-----HHHHHHHHHHHHHHH
Q 006212 321 GGV---IDEEALVRALDSG-VVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEA-----QEGVAIEIAEAVVGA 391 (656)
Q Consensus 321 g~i---vde~aL~~aL~~g-~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea-----~~~~~~~~~~~i~~~ 391 (656)
-.. ...++.+++ .+| .|.+.|+-.-..+........=+..|+++-|-++-....+ -++|-..+++.|.++
T Consensus 142 Pt~~~E~~pe~a~~~-t~G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~ 220 (279)
T cd05312 142 PTSKAECTAEDAYKW-TDGRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASL 220 (279)
T ss_pred cCCccccCHHHHHHh-hcCCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHh
Confidence 433 123333332 334 4766665433333211122223456899999887432222 245556666677666
Q ss_pred HcCC
Q 006212 392 LRGE 395 (656)
Q Consensus 392 l~g~ 395 (656)
...+
T Consensus 221 ~~~~ 224 (279)
T cd05312 221 VTDE 224 (279)
T ss_pred CCcc
Confidence 5443
No 340
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=94.98 E-value=1.2 Score=49.33 Aligned_cols=182 Identities=21% Similarity=0.214 Sum_probs=116.0
Q ss_pred hcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhcCCC
Q 006212 174 EFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGM 253 (656)
Q Consensus 174 ~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~ 253 (656)
+..|.|.|.-- .-+|=.+++-+++.+| ..|..|...+|.+.|.|.-|-.+++.+++.|+
T Consensus 165 ~~~IPvFhDDq---qGTaiv~lA~llnalk------------------~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~ 223 (432)
T COG0281 165 RMNIPVFHDDQ---QGTAIVTLAALLNALK------------------LTGKKLKDQKIVINGAGAAGIAIADLLVAAGV 223 (432)
T ss_pred cCCCCcccccc---cHHHHHHHHHHHHHHH------------------HhCCCccceEEEEeCCcHHHHHHHHHHHHhCC
Confidence 34577777643 2345556777777665 46889999999999999999999999999998
Q ss_pred ---EEEEECCCC--ChhH------------HHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEE
Q 006212 254 ---NVIAHDPYA--PADK------------ARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIV 316 (656)
Q Consensus 254 ---~Vi~~d~~~--~~~~------------a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailI 316 (656)
+|+.+|+.- ...+ +.+.--.+.. ++.+..+|+++=+- ..+.+.++.++.|.++++|.
T Consensus 224 ~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~adv~iG~S-----~~G~~t~e~V~~Ma~~PiIf 297 (432)
T COG0281 224 KEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGADVLIGVS-----GVGAFTEEMVKEMAKHPIIF 297 (432)
T ss_pred CcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCCCEEEEcC-----CCCCcCHHHHHHhccCCEEe
Confidence 588888652 1110 1000001111 45788999986543 22889999999999999999
Q ss_pred EcCCCc--hhcHHHHHHhHhcC-CeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHH-----HHHHHHHHHHHH
Q 006212 317 NVARGG--VIDEEALVRALDSG-VVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEA-----QEGVAIEIAEAV 388 (656)
Q Consensus 317 NvaRg~--ivde~aL~~aL~~g-~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea-----~~~~~~~~~~~i 388 (656)
=.+--. +.-+++ .++ ..+ .|.+.|.--+ |- +..|+++-|.++-.-..+ -++|...+++.|
T Consensus 298 alaNP~pEi~Pe~a-~~~-~~~aaivaTGrsd~---------Pn-QvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~Ai 365 (432)
T COG0281 298 ALANPTPEITPEDA-KEW-GDGAAIVATGRSDY---------PN-QVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAI 365 (432)
T ss_pred ecCCCCccCCHHHH-hhc-CCCCEEEEeCCCCC---------cc-cccceeEcchhhhhhHhhccccCCHHHHHHHHHHH
Confidence 888533 222332 222 222 5544432222 21 567999999886432222 145556666777
Q ss_pred HHHHcC
Q 006212 389 VGALRG 394 (656)
Q Consensus 389 ~~~l~g 394 (656)
.++...
T Consensus 366 A~~~~~ 371 (432)
T COG0281 366 ADLARE 371 (432)
T ss_pred Hhhccc
Confidence 776543
No 341
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=94.95 E-value=1.2 Score=46.43 Aligned_cols=181 Identities=14% Similarity=0.105 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhcCCC-----------EEEEEC
Q 006212 191 AEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGM-----------NVIAHD 259 (656)
Q Consensus 191 AE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~-----------~Vi~~d 259 (656)
|=-+++-+++.+| ..|..|...+|.|+|.|.-|-.+|+.+...++ +++.+|
T Consensus 5 aaV~lAgllnAlk------------------~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD 66 (254)
T cd00762 5 ASVAVAGLLAALK------------------VTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVD 66 (254)
T ss_pred HHHHHHHHHHHHH------------------HhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEEC
Confidence 4456666776665 34678889999999999999999999987654 688888
Q ss_pred CCC-------C--h--hH---HHHcCCeecCHHHHhc--cCCEEEEccCCCccccccccHHHHhcCC---CCcEEEEcCC
Q 006212 260 PYA-------P--A--DK---ARAVGVELVSFDQALA--TADFISLHMPLNPTTSKIFNDETFAKMK---KGVRIVNVAR 320 (656)
Q Consensus 260 ~~~-------~--~--~~---a~~~g~~~~~l~ell~--~aDvV~l~~Plt~~T~~li~~~~l~~mK---~gailINvaR 320 (656)
.+- . . .. .....-...+|.|+++ ..|+++=.. ..-+++.++.++.|. +..+|.=.+.
T Consensus 67 ~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaLSN 142 (254)
T cd00762 67 RKGLLVKNRKETCPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAEINERPVIFALSN 142 (254)
T ss_pred CCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhhcCCCCEEEECCC
Confidence 641 1 1 11 1111112348999999 999987633 125789999999998 8899999886
Q ss_pred Cch---hcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHH-----HHHHHHHHHHHHHHH
Q 006212 321 GGV---IDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQ-----EGVAIEIAEAVVGAL 392 (656)
Q Consensus 321 g~i---vde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~-----~~~~~~~~~~i~~~l 392 (656)
-.. ...++.+++=+...|.+.|.-.+.++-.......-+..|+++-|-++-....++ ++|-..+++.+.++.
T Consensus 143 Pt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v 222 (254)
T cd00762 143 PTSKAECTAEEAYTATEGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSV 222 (254)
T ss_pred cCCccccCHHHHHhhcCCCEEEEECCCCCCcccCCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhC
Confidence 433 133343443333367666665554442111122235678999998864322221 445555556665554
Q ss_pred c
Q 006212 393 R 393 (656)
Q Consensus 393 ~ 393 (656)
.
T Consensus 223 ~ 223 (254)
T cd00762 223 T 223 (254)
T ss_pred C
Confidence 3
No 342
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.87 E-value=0.078 Score=59.29 Aligned_cols=110 Identities=16% Similarity=0.203 Sum_probs=67.2
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-----hHHHHcCCeec---CHHHHhcc-CCEEEEccCCCcc
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-----DKARAVGVELV---SFDQALAT-ADFISLHMPLNPT 296 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-----~~a~~~g~~~~---~l~ell~~-aDvV~l~~Plt~~ 296 (656)
++.||++.|+|.|.+|.++|+.|++.|++|.++|..... +...+.|+... ...+++.. +|+|+...-..+.
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~ 81 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYT 81 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCC
Confidence 367999999999999999999999999999999965311 22344566542 23344554 8988775522221
Q ss_pred c----------cccccHHHH-hcCCCC-cEEEEcCCCchhcHHHHHHhHhc
Q 006212 297 T----------SKIFNDETF-AKMKKG-VRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 297 T----------~~li~~~~l-~~mK~g-ailINvaRg~ivde~aL~~aL~~ 335 (656)
. ..++.+.++ ..+.+. .+-|--+.|+--...-+...|+.
T Consensus 82 ~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~ 132 (447)
T PRK02472 82 NPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKA 132 (447)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 1 122333333 233332 33333346777666666666654
No 343
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.87 E-value=0.065 Score=60.77 Aligned_cols=66 Identities=20% Similarity=0.250 Sum_probs=50.3
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChh--HHHHcCCeec---CHHHHhccCCEEEEc
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD--KARAVGVELV---SFDQALATADFISLH 290 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~--~a~~~g~~~~---~l~ell~~aDvV~l~ 290 (656)
.++.+|++.|+|+|..|.++|+.|+..|++|.++|+..... .....|+.+. ...+.+.++|+|+..
T Consensus 11 ~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~S 81 (473)
T PRK00141 11 PQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTS 81 (473)
T ss_pred ccccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeC
Confidence 35789999999999999999999999999999999764221 2244577553 233456789998765
No 344
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.82 E-value=0.051 Score=60.74 Aligned_cols=65 Identities=20% Similarity=0.280 Sum_probs=49.1
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHH-cCCeec--------CHHHH-hccCCEEEEccCCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARA-VGVELV--------SFDQA-LATADFISLHMPLN 294 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~-~g~~~~--------~l~el-l~~aDvV~l~~Plt 294 (656)
+++.|+|+|.+|+.+|+.|...|++|+++|++.. .+.+.+ .|+... .++++ +.++|.|+++++..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~ 76 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSD 76 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCCh
Confidence 4789999999999999999999999999998652 233333 444321 24555 78999999999843
No 345
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.82 E-value=0.23 Score=54.63 Aligned_cols=102 Identities=16% Similarity=0.169 Sum_probs=69.2
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh----------------hHHHHcC-----Cee-cCHHHHhccCCEE
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA----------------DKARAVG-----VEL-VSFDQALATADFI 287 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~----------------~~a~~~g-----~~~-~~l~ell~~aDvV 287 (656)
++|.|+|.|-+|-..+..+..+|.+|+.+|-.... +...+.+ ..+ .+.++.++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 47899999999999999999999999999854321 1111111 122 3688899999999
Q ss_pred EEccCCCccccccccH--------HHHhcCCCCcEEEEcCCCchhcHHHHHH
Q 006212 288 SLHMPLNPTTSKIFND--------ETFAKMKKGVRIVNVARGGVIDEEALVR 331 (656)
Q Consensus 288 ~l~~Plt~~T~~li~~--------~~l~~mK~gailINvaRg~ivde~aL~~ 331 (656)
++|+|..+.-.+-++- +....++..+++|+=+.-.+=-.+.+.+
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~ 132 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRA 132 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHH
Confidence 9999944433443332 3344577668999988754433444433
No 346
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.82 E-value=0.069 Score=60.20 Aligned_cols=109 Identities=17% Similarity=0.244 Sum_probs=67.9
Q ss_pred cCCCEEEEEecChhHHH-HHHHHhcCCCEEEEECCCCCh--hHHHHcCCeec--CHHHHhccCCEEEEccCCCcccc---
Q 006212 227 LVGKTLAVMGFGKVGSE-VARRAKGLGMNVIAHDPYAPA--DKARAVGVELV--SFDQALATADFISLHMPLNPTTS--- 298 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~-vA~~lk~~G~~Vi~~d~~~~~--~~a~~~g~~~~--~l~ell~~aDvV~l~~Plt~~T~--- 298 (656)
..+|++.|+|+|..|.+ +|+.|+..|++|.++|..... +...+.|+... .-.+.+..+|+|++.--..+...
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~ 84 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV 84 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence 46789999999999999 799999999999999976532 22344577553 22345678998876532222211
Q ss_pred -------ccccHHHH-hc-CCCCcEEEEc-CCCchhcHHHHHHhHhc
Q 006212 299 -------KIFNDETF-AK-MKKGVRIVNV-ARGGVIDEEALVRALDS 335 (656)
Q Consensus 299 -------~li~~~~l-~~-mK~gailINv-aRg~ivde~aL~~aL~~ 335 (656)
.++++.++ .. +++..+|-=+ +.|+--...-+...|+.
T Consensus 85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~ 131 (461)
T PRK00421 85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAE 131 (461)
T ss_pred HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHh
Confidence 23444333 23 3332333333 45877666655666654
No 347
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.78 E-value=0.072 Score=60.70 Aligned_cols=64 Identities=27% Similarity=0.372 Sum_probs=48.0
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh---hHHHHc--CCeec--C-HHHHhccCCEEEEc
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA---DKARAV--GVELV--S-FDQALATADFISLH 290 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~---~~a~~~--g~~~~--~-l~ell~~aDvV~l~ 290 (656)
+.+++|+|+|+|..|.++|+.|+..|.+|.++|..... +...+. |+.+. + ..+.+..+|+|+..
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~s 76 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALS 76 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEEC
Confidence 56899999999999999999999999999999975421 222333 44432 1 23556789999886
No 348
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=94.77 E-value=0.1 Score=42.10 Aligned_cols=59 Identities=12% Similarity=0.309 Sum_probs=43.1
Q ss_pred EEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCC----CCHHHHHHHhc
Q 006212 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE----PNQDSLKEIGK 620 (656)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~----~~~e~l~~L~~ 620 (656)
.|.+...|+||.++.++..|.++++||..+.+.... + .....+.++.+ .+++..++|++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~-~-~~~~~~~v~~~~~~~~~~~~~~~l~~ 64 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTG-E-RALDVFYVTDSDGRPLDPERIARLEE 64 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecC-C-EEEEEEEEECCCCCcCCHHHHHHHHH
Confidence 356778999999999999999999999999987553 2 55555555433 24455555543
No 349
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=94.74 E-value=0.19 Score=46.02 Aligned_cols=59 Identities=15% Similarity=0.459 Sum_probs=47.1
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHHhc
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGK 620 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L~~ 620 (656)
..|-|...|+||-+..|..+|++++||+..+--+-.++ +.|++++.+++- ++..+.|++
T Consensus 70 dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek-~KAlli~r~ed~--d~~~~aLed 128 (142)
T COG4747 70 DVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK-QKALLIVRVEDI--DRAIKALED 128 (142)
T ss_pred eEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC-ceEEEEEEhhHH--HHHHHHHHH
Confidence 34667889999999999999999999999998876665 889999987654 344555544
No 350
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=94.74 E-value=1.4 Score=47.99 Aligned_cols=65 Identities=25% Similarity=0.167 Sum_probs=47.7
Q ss_pred c-CCCEEEEEecC-------hhHHHHHHHHhcCCCEEEEECC-C---CChhH-------HHHcCC--ee-cCHHHHhccC
Q 006212 227 L-VGKTLAVMGFG-------KVGSEVARRAKGLGMNVIAHDP-Y---APADK-------ARAVGV--EL-VSFDQALATA 284 (656)
Q Consensus 227 l-~gktvGIIGlG-------~IG~~vA~~lk~~G~~Vi~~d~-~---~~~~~-------a~~~g~--~~-~~l~ell~~a 284 (656)
+ .|++|+|+|.| ++..+++..+..+|++|.+..| . .+.+. +.+.|. .. .++++.+++|
T Consensus 166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~a 245 (335)
T PRK04523 166 TLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGA 245 (335)
T ss_pred ccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 5 68999877643 7888999989999999999988 3 22221 233454 22 4899999999
Q ss_pred CEEEEcc
Q 006212 285 DFISLHM 291 (656)
Q Consensus 285 DvV~l~~ 291 (656)
|+|..-.
T Consensus 246 Dvvy~~~ 252 (335)
T PRK04523 246 DVVYAKS 252 (335)
T ss_pred CEEEece
Confidence 9998743
No 351
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.68 E-value=0.14 Score=42.61 Aligned_cols=60 Identities=17% Similarity=0.255 Sum_probs=44.4
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCC----CC-CHHHHHHHh
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE----EP-NQDSLKEIG 619 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~----~~-~~e~l~~L~ 619 (656)
..+.+..+|+||...+++.+|+.+|+||..-++... .++.++-.+.+.+ ++ +++.+++|+
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~-~~~~v~D~F~v~~~~~~~~~~~~~~~~l~ 66 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTT-RDGYALDTFVVLDPDGEPIGERERLARIR 66 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEe-CCCeEEEEEEEECCCCCCCChHHHHHHHH
Confidence 356778899999999999999999999999999755 3566766666522 22 345555554
No 352
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.65 E-value=0.097 Score=57.41 Aligned_cols=87 Identities=31% Similarity=0.400 Sum_probs=60.2
Q ss_pred cCCCEEEEEecCh----------hHHHHHHHHhcCCCEEEEECCCCChhHHHHc-CCeec-CHHHHhccCCEEEEccCCC
Q 006212 227 LVGKTLAVMGFGK----------VGSEVARRAKGLGMNVIAHDPYAPADKARAV-GVELV-SFDQALATADFISLHMPLN 294 (656)
Q Consensus 227 l~gktvGIIGlG~----------IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~-g~~~~-~l~ell~~aDvV~l~~Plt 294 (656)
|.||||||+|+-- --..++++|+..|.+|.+|||.......... ++.+. +++++++.||++++++. -
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~te-w 386 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTE-W 386 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEecc-H
Confidence 9999999999853 4567899999999999999997643322221 24554 89999999999999875 2
Q ss_pred ccccccccHHHHhcCCCCcEEEE
Q 006212 295 PTTSKIFNDETFAKMKKGVRIVN 317 (656)
Q Consensus 295 ~~T~~li~~~~l~~mK~gailIN 317 (656)
++-+.+ +-+.+ .|| +..++|
T Consensus 387 ~ef~~~-d~~~~-~m~-~~~v~D 406 (414)
T COG1004 387 DEFRDL-DFEKL-LMK-TPVVID 406 (414)
T ss_pred HHHhcc-Chhhh-hcc-CCEEEe
Confidence 233322 22233 455 445555
No 353
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=94.65 E-value=0.066 Score=60.07 Aligned_cols=122 Identities=24% Similarity=0.358 Sum_probs=75.6
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-----hHHHHcCCeec---CHHHHhccCCEEEEccCCCcccc
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-----DKARAVGVELV---SFDQALATADFISLHMPLNPTTS 298 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-----~~a~~~g~~~~---~l~ell~~aDvV~l~~Plt~~T~ 298 (656)
..||+|.|+|+|.-|.++|+.|+..|++|.++|..... ......++.+. ..++.+.++|+|++. |.-+-+.
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~S-PGi~~~~ 83 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKS-PGIPPTH 83 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEEC-CCCCCCC
Confidence 44999999999999999999999999999999966522 11223455443 122678899999875 3333333
Q ss_pred ccc-----------cHH-HHhcC-CCCcEEEEcC-CCchhcHHHHHHhHhc--------CCeEEEEeeccCCC
Q 006212 299 KIF-----------NDE-TFAKM-KKGVRIVNVA-RGGVIDEEALVRALDS--------GVVAQAALDVFTEE 349 (656)
Q Consensus 299 ~li-----------~~~-~l~~m-K~gailINva-Rg~ivde~aL~~aL~~--------g~i~gA~lDV~~~E 349 (656)
.++ ++- .+.+. ++..+|-=+| -|+--.+.-+...|++ |.|+..++|+...+
T Consensus 84 p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~ 156 (448)
T COG0771 84 PLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQA 156 (448)
T ss_pred HHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhccc
Confidence 332 222 22222 2344554455 4666545544555544 34555778887764
No 354
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.64 E-value=0.12 Score=55.56 Aligned_cols=46 Identities=28% Similarity=0.488 Sum_probs=38.5
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC-ChhHHHHcCCe
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVE 273 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~-~~~~a~~~g~~ 273 (656)
.|++|.|+|.|.+|...++.++..|. +|++.|... ..+.++++|+.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~ 216 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD 216 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc
Confidence 58999999999999999999999998 688888765 45566777763
No 355
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.62 E-value=0.23 Score=53.38 Aligned_cols=89 Identities=16% Similarity=0.209 Sum_probs=56.1
Q ss_pred CEEEEEecChhHHHHHHHHhcCC--CEEEEECCCCChh--HHHHc-------C---Cee-cCHHHHhccCCEEEEccCCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAPAD--KARAV-------G---VEL-VSFDQALATADFISLHMPLN 294 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G--~~Vi~~d~~~~~~--~a~~~-------g---~~~-~~l~ell~~aDvV~l~~Plt 294 (656)
.+|+|||.|.+|..+|..+...| -++..||.+.... .+.++ . +.. .+.++ +++||+|+++.-..
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~~ 82 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGAR 82 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCCC
Confidence 58999999999999999887555 4799999765321 11111 1 111 24554 89999999965432
Q ss_pred c---cccc-cc--cH-------HHHhcCCCCcEEEEcC
Q 006212 295 P---TTSK-IF--ND-------ETFAKMKKGVRIVNVA 319 (656)
Q Consensus 295 ~---~T~~-li--~~-------~~l~~mK~gailINva 319 (656)
. +++. ++ |. +.+....|.+++++++
T Consensus 83 ~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs 120 (312)
T cd05293 83 QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS 120 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc
Confidence 1 2331 11 11 2233356788999997
No 356
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.61 E-value=0.14 Score=54.50 Aligned_cols=90 Identities=22% Similarity=0.240 Sum_probs=65.9
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeec-CHHHHhccCCEEEEccCCCcccc---c----
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTS---K---- 299 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~---~---- 299 (656)
.|++++|||-=.--..++++|.+.|++|..+.-.. +.....|+... +.++++++||+|++-+|.+.+.. .
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~--~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~ 78 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQ--LDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSN 78 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccc--cccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccc
Confidence 47899999999999999999999999998753211 11123477766 67888999999999988654321 1
Q ss_pred ---cccHHHHhcCCCCcEEEEcCC
Q 006212 300 ---IFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 300 ---li~~~~l~~mK~gailINvaR 320 (656)
-++.+.++.||+++.++ ++.
T Consensus 79 ~~~~~~~~~l~~l~~~~~v~-~G~ 101 (296)
T PRK08306 79 EKLVLTEELLELTPEHCTIF-SGI 101 (296)
T ss_pred cCCcchHHHHHhcCCCCEEE-Eec
Confidence 13577899999998544 443
No 357
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.58 E-value=0.066 Score=57.34 Aligned_cols=64 Identities=20% Similarity=0.201 Sum_probs=46.0
Q ss_pred CEEEEEecChhHHHHHHHHhcCC--CEEEEECCCCChh--HHHHcC-C-------e-e-cCHHHHhccCCEEEEccCCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAPAD--KARAVG-V-------E-L-VSFDQALATADFISLHMPLN 294 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G--~~Vi~~d~~~~~~--~a~~~g-~-------~-~-~~l~ell~~aDvV~l~~Plt 294 (656)
++|+|||.|.+|..+|..+...| .+|..+|+..... .+.++. . . . .+. +.+++||+|+++++..
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~ 78 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGAN 78 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCC
Confidence 37999999999999999998877 5899999875321 121111 1 0 1 134 5589999999999853
No 358
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=94.57 E-value=0.13 Score=53.65 Aligned_cols=112 Identities=21% Similarity=0.199 Sum_probs=71.1
Q ss_pred HHHHhchhHHHHHHHccccccccccccccCCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCC---Chh----HHHHc
Q 006212 199 ASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA---PAD----KARAV 270 (656)
Q Consensus 199 L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~---~~~----~a~~~ 270 (656)
.+.+|++.+..+ ..|.+|...|++|+|+ |.||..+|+.+.+.+.+....-+.. ..+ .-..+
T Consensus 148 yaa~r~Vl~~~~-----------~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~ 216 (351)
T COG5322 148 YAACRQVLKHFA-----------QLGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEEL 216 (351)
T ss_pred HHHHHHHHHHHH-----------HhCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhccccc
Confidence 345676655443 2589999999999997 9999999999998766544432211 111 11122
Q ss_pred CCe-ecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcH
Q 006212 271 GVE-LVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDE 326 (656)
Q Consensus 271 g~~-~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde 326 (656)
|-. ..+++..+.+.|+++-..... +-..|+.. .+|||+.|+|-++-.=+|+
T Consensus 217 ~~~~i~s~d~~~~~e~i~v~vAs~~--~g~~I~pq---~lkpg~~ivD~g~P~dvd~ 268 (351)
T COG5322 217 GRGKIMSLDYALPQEDILVWVASMP--KGVEIFPQ---HLKPGCLIVDGGYPKDVDT 268 (351)
T ss_pred CCCeeeeccccccccceEEEEeecC--CCceechh---hccCCeEEEcCCcCccccc
Confidence 332 347777666666665544322 23445554 3699999999998765554
No 359
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=94.56 E-value=0.053 Score=56.21 Aligned_cols=55 Identities=18% Similarity=0.250 Sum_probs=48.6
Q ss_pred CccEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCC
Q 006212 557 EGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPN 611 (656)
Q Consensus 557 ~~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~ 611 (656)
+...|.+..+|+||++++|++.|.++|.||..-.-+....++.=+|+++++.+-.
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~ 60 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGG 60 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCC
Confidence 4578889999999999999999999999999988886666888899999887655
No 360
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=94.55 E-value=0.08 Score=58.07 Aligned_cols=61 Identities=25% Similarity=0.362 Sum_probs=44.7
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh--hHHHHcCC--eecC---HHHHhccCCEEEE
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAVGV--ELVS---FDQALATADFISL 289 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~--~~a~~~g~--~~~~---l~ell~~aDvV~l 289 (656)
.++|||||-|..|+.++..++.+|++|+++|++... ....+.-+ .+.+ +.++++.||+|+.
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 479999999999999999999999999999987522 11111101 1223 6678899999864
No 361
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=94.44 E-value=2.1 Score=51.23 Aligned_cols=159 Identities=19% Similarity=0.178 Sum_probs=105.8
Q ss_pred cCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhcCCC-
Q 006212 175 FGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGM- 253 (656)
Q Consensus 175 ~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~- 253 (656)
..|.|.|.-- .-+|=-+++-+++.+| ..|..+...+|.|.|.|.-|-.+|+.+...|.
T Consensus 152 ~~ip~f~DD~---~GTa~v~lA~l~na~~------------------~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~ 210 (752)
T PRK07232 152 MDIPVFHDDQ---HGTAIISAAALLNALE------------------LVGKKIEDVKIVVSGAGAAAIACLNLLVALGAK 210 (752)
T ss_pred cCCCeecccc---chHHHHHHHHHHHHHH------------------HhCCChhhcEEEEECccHHHHHHHHHHHHcCCC
Confidence 4799999833 3344456777777666 34678889999999999999999999998888
Q ss_pred --EEEEECCCC--C------hhHHHH---cCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 006212 254 --NVIAHDPYA--P------ADKARA---VGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 254 --~Vi~~d~~~--~------~~~a~~---~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaR 320 (656)
+++.+|.+- . ....+. ..-...+|.|+++.+|+++=. . +-+.++++.++.|.+.++|.=.+.
T Consensus 211 ~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG~-s----~~g~~~~~~v~~M~~~piifalsN 285 (752)
T PRK07232 211 KENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLGL-S----AAGVLTPEMVKSMADNPIIFALAN 285 (752)
T ss_pred cccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEEc-C----CCCCCCHHHHHHhccCCEEEecCC
Confidence 788888542 1 111111 111234899999999988653 2 247899999999999999999986
Q ss_pred Cchh-cHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCC
Q 006212 321 GGVI-DEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLG 370 (656)
Q Consensus 321 g~iv-de~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g 370 (656)
-..- ..++.++ ...+.|.+.|- ...| =+-.|+++-|-++
T Consensus 286 P~~E~~p~~a~~-~~~~~i~atGr---s~~p-------nQ~NN~~~FPgi~ 325 (752)
T PRK07232 286 PDPEITPEEAKA-VRPDAIIATGR---SDYP-------NQVNNVLCFPYIF 325 (752)
T ss_pred CCccCCHHHHHH-hcCCEEEEECC---cCCC-------Ccccceeecchhh
Confidence 5432 2222222 23345655551 1112 1245777777665
No 362
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=94.42 E-value=0.099 Score=56.87 Aligned_cols=87 Identities=18% Similarity=0.331 Sum_probs=54.0
Q ss_pred CEEEEEec-ChhHHHHHHHHhcC-CCEEEE-ECCCCChh-HHHHc-------CCeecCHHH-HhccCCEEEEccCCCccc
Q 006212 230 KTLAVMGF-GKVGSEVARRAKGL-GMNVIA-HDPYAPAD-KARAV-------GVELVSFDQ-ALATADFISLHMPLNPTT 297 (656)
Q Consensus 230 ktvGIIGl-G~IG~~vA~~lk~~-G~~Vi~-~d~~~~~~-~a~~~-------g~~~~~l~e-ll~~aDvV~l~~Plt~~T 297 (656)
++|+|+|. |.+|+.+++.+..+ ++++.+ +++....+ ..... +..+.++++ .+.++|+|++|+|... .
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~-~ 81 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGV-S 81 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHH-H
Confidence 58999996 99999999999877 678755 55432111 11111 111223333 4578999999999431 1
Q ss_pred cccccHHHHhcCCCCcEEEEcCCC
Q 006212 298 SKIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINvaRg 321 (656)
..+ ....++.|+.+||.+..
T Consensus 82 ~~~----v~~a~~aG~~VID~S~~ 101 (343)
T PRK00436 82 MDL----APQLLEAGVKVIDLSAD 101 (343)
T ss_pred HHH----HHHHHhCCCEEEECCcc
Confidence 111 12224679999999843
No 363
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=94.41 E-value=0.11 Score=55.25 Aligned_cols=65 Identities=17% Similarity=0.134 Sum_probs=47.1
Q ss_pred ccEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCC---CCCH-HHHHHHhcCC
Q 006212 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE---EPNQ-DSLKEIGKVP 622 (656)
Q Consensus 558 ~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~---~~~~-e~l~~L~~~~ 622 (656)
.+.+.+.-+|+||+++.|++.|+++|+||.+++..+...++.-.|++.++- +.+. ++.+.|.++.
T Consensus 6 ~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~ 74 (286)
T PRK06027 6 RYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALA 74 (286)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 355667789999999999999999999999999987444556666656554 2232 4555555554
No 364
>PRK11579 putative oxidoreductase; Provisional
Probab=94.38 E-value=0.097 Score=56.71 Aligned_cols=63 Identities=17% Similarity=0.254 Sum_probs=44.3
Q ss_pred CEEEEEecChhHHH-HHHHHhcC-CCEEEE-ECCCCChhHHHHc-CCe-ecCHHHHhc--cCCEEEEccCC
Q 006212 230 KTLAVMGFGKVGSE-VARRAKGL-GMNVIA-HDPYAPADKARAV-GVE-LVSFDQALA--TADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIGlG~IG~~-vA~~lk~~-G~~Vi~-~d~~~~~~~a~~~-g~~-~~~l~ell~--~aDvV~l~~Pl 293 (656)
-++||||+|.||+. .+..++.. ++++.+ +|+.... .+... +.. +.+++++++ +.|+|++|+|.
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~-~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~ 74 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATK-VKADWPTVTVVSEPQHLFNDPNIDLIVIPTPN 74 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHH-HHhhCCCCceeCCHHHHhcCCCCCEEEEcCCc
Confidence 37999999999985 56666654 788876 6776422 12223 333 458999996 57999999993
No 365
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.34 E-value=0.11 Score=58.65 Aligned_cols=72 Identities=21% Similarity=0.190 Sum_probs=52.6
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC------hhHHHHcCCeec--CHHHHhccCCEEEEccCCCc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP------ADKARAVGVELV--SFDQALATADFISLHMPLNP 295 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~------~~~a~~~g~~~~--~l~ell~~aDvV~l~~Plt~ 295 (656)
+..+.++++.|||.|.+|.++|+.|+..|++|.++|.... .+..++.|+.+. .-.+....+|+|+++.-..+
T Consensus 11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~ 90 (480)
T PRK01438 11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRP 90 (480)
T ss_pred ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCC
Confidence 4567899999999999999999999999999999986531 122445677553 11124557999998864433
No 366
>PRK06270 homoserine dehydrogenase; Provisional
Probab=94.33 E-value=0.19 Score=54.68 Aligned_cols=106 Identities=22% Similarity=0.273 Sum_probs=61.1
Q ss_pred EEEEEecChhHHHHHHHHhcC----------CCEEEE-ECCC--------CChhHH----HHcCC--------eecCHHH
Q 006212 231 TLAVMGFGKVGSEVARRAKGL----------GMNVIA-HDPY--------APADKA----RAVGV--------ELVSFDQ 279 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~----------G~~Vi~-~d~~--------~~~~~a----~~~g~--------~~~~l~e 279 (656)
+|||+|+|.||+.+++.++.. +++|.+ +|+. ...+.+ ...+. ...++++
T Consensus 4 ~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~e 83 (341)
T PRK06270 4 KIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGLE 83 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHHH
Confidence 799999999999999998743 577665 4532 122221 11221 0137888
Q ss_pred Hh--ccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchh-cHHHHHHhHhcC
Q 006212 280 AL--ATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI-DEEALVRALDSG 336 (656)
Q Consensus 280 ll--~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~iv-de~aL~~aL~~g 336 (656)
++ .+.|+|+.|+|....+...--.-....|+.|.-+|-...+.+. ..++|.++.++.
T Consensus 84 ll~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~ 143 (341)
T PRK06270 84 VIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKN 143 (341)
T ss_pred HhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHc
Confidence 87 4689999999954432211111223445667666554343332 345666655543
No 367
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.32 E-value=0.12 Score=55.75 Aligned_cols=47 Identities=21% Similarity=0.236 Sum_probs=38.1
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCC---C-ChhHHHHcCCee
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY---A-PADKARAVGVEL 274 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~---~-~~~~a~~~g~~~ 274 (656)
.|+++.|+|.|.+|...++.++..|.+|++.++. . ..+.+++.|+..
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~ 222 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATY 222 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Confidence 5889999999999999999999999999999873 2 334566667643
No 368
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=94.32 E-value=0.092 Score=57.08 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=33.2
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCC
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~ 261 (656)
..|.+++|.|||+|.+|..+|+.|...|. ++..+|+.
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 36899999999999999999999999997 78888875
No 369
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=94.30 E-value=0.15 Score=54.33 Aligned_cols=87 Identities=21% Similarity=0.226 Sum_probs=55.9
Q ss_pred EEEEecChhHHHHHHHHhcCC--CEEEEECCCCChhHHHHcC----------Cee--cCHHHHhccCCEEEEccCCCccc
Q 006212 232 LAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAPADKARAVG----------VEL--VSFDQALATADFISLHMPLNPTT 297 (656)
Q Consensus 232 vGIIGlG~IG~~vA~~lk~~G--~~Vi~~d~~~~~~~a~~~g----------~~~--~~l~ell~~aDvV~l~~Plt~~T 297 (656)
|+|||.|.+|..+|..+...| .++..+|.......+.... ... .+-.+.+++||+|+++... +..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~-p~~ 79 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGA-PRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCC-CCC
Confidence 589999999999999998777 5899999875432222111 111 1114689999999999873 332
Q ss_pred cccc-------cH-------HHHhcCCCCcEEEEcC
Q 006212 298 SKIF-------ND-------ETFAKMKKGVRIVNVA 319 (656)
Q Consensus 298 ~~li-------~~-------~~l~~mK~gailINva 319 (656)
.++- |. ..+....|++++++++
T Consensus 80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 2221 11 1222345788899987
No 370
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=94.27 E-value=0.2 Score=52.08 Aligned_cols=84 Identities=18% Similarity=0.193 Sum_probs=57.9
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKM 309 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~m 309 (656)
-++-|+|-|.+++.+|+.++.+|++|.++|++.... . ...+..++.+....| .+.+..+
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~--~---------~~~~~~~~~~~~~~~----------~~~~~~~ 159 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEF--P---------EDLPDGVATLVTDEP----------EAEVAEA 159 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccc--c---------ccCCCCceEEecCCH----------HHHHhcC
Confidence 479999999999999999999999999999874210 0 011123333322222 2233345
Q ss_pred CCCcEEEEcCCCchhcHHHHHHhHh
Q 006212 310 KKGVRIVNVARGGVIDEEALVRALD 334 (656)
Q Consensus 310 K~gailINvaRg~ivde~aL~~aL~ 334 (656)
.++..+|=+.++.-.|.+.|..+|+
T Consensus 160 ~~~t~vvi~th~h~~D~~~L~~aL~ 184 (246)
T TIGR02964 160 PPGSYFLVLTHDHALDLELCHAALR 184 (246)
T ss_pred CCCcEEEEEeCChHHHHHHHHHHHh
Confidence 5677777778888889999988884
No 371
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=94.22 E-value=0.12 Score=43.13 Aligned_cols=60 Identities=12% Similarity=0.261 Sum_probs=42.1
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeecc-CccEEEEEEeCCCC-CH---HHHHHHhc
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFR-RNHGIMAIGVDEEP-NQ---DSLKEIGK 620 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~-gg~al~~i~~D~~~-~~---e~l~~L~~ 620 (656)
+++.-+|+||.++.|.+.++++++||..++-..... .++-...++++... +. ++++.|++
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 456678999999999999999999999995533222 34445557776542 22 56666665
No 372
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=94.20 E-value=0.073 Score=61.59 Aligned_cols=69 Identities=20% Similarity=0.376 Sum_probs=51.5
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-----CH---HH-HhccCCEEEEccCCCcccc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-----SF---DQ-ALATADFISLHMPLNPTTS 298 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-----~l---~e-ll~~aDvV~l~~Plt~~T~ 298 (656)
..+-|+|+|++|+.+|+.|+..|.+|++.|.+. ..+.+++.|+..+ +. ++ -+++||.++++++...++.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~ 496 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAG 496 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHH
Confidence 468899999999999999999999999999876 3455666676432 22 22 2578998988888554433
No 373
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=94.20 E-value=0.071 Score=56.75 Aligned_cols=60 Identities=18% Similarity=0.339 Sum_probs=42.0
Q ss_pred EEEEecChhHHHHHHHHhcCCC-EEEEECCCCChhHHHHc---------CC----ee-cCHHHHhccCCEEEEccC
Q 006212 232 LAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKARAV---------GV----EL-VSFDQALATADFISLHMP 292 (656)
Q Consensus 232 vGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~~~a~~~---------g~----~~-~~l~ell~~aDvV~l~~P 292 (656)
|+|||.|.+|..+|..+...|. +|+.+|.......+... +. .. .+.+ .+++||+|++++.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~-~l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYE-DIAGSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHH-HhCCCCEEEEecC
Confidence 6899999999999998886554 99999987532211111 11 11 2444 5899999999874
No 374
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=94.15 E-value=0.071 Score=54.51 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=32.4
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCC
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~ 261 (656)
..|.+++|.|+|+|.+|..+|+.|...|. ++..+|+.
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 46889999999999999999999998887 67777753
No 375
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=94.14 E-value=0.12 Score=38.15 Aligned_cols=57 Identities=21% Similarity=0.303 Sum_probs=40.5
Q ss_pred EEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCC-CCHHHHHHH
Q 006212 562 LCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE-PNQDSLKEI 618 (656)
Q Consensus 562 lv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~-~~~e~l~~L 618 (656)
.+..+|+||.+.++...|.++++||..+...........-+.+.++.. ..+.++++|
T Consensus 2 ~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 59 (60)
T cd02116 2 TVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGDLEKLLEAL 59 (60)
T ss_pred EEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEechHHHHHHHHHh
Confidence 356778999999999999999999999998654434445555666654 333444443
No 376
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=94.14 E-value=1.1 Score=49.84 Aligned_cols=65 Identities=26% Similarity=0.336 Sum_probs=49.2
Q ss_pred ccCCCEEEEEec-----C---hhHHHHHHHHhcCCCEEEEECCCC---Chh---H----HHHcCC--ee-cCHHHHhccC
Q 006212 226 SLVGKTLAVMGF-----G---KVGSEVARRAKGLGMNVIAHDPYA---PAD---K----ARAVGV--EL-VSFDQALATA 284 (656)
Q Consensus 226 ~l~gktvGIIGl-----G---~IG~~vA~~lk~~G~~Vi~~d~~~---~~~---~----a~~~g~--~~-~~l~ell~~a 284 (656)
.+.|+||+|+|- | ++..+++..+..+|++|....|.. ..+ . +++.|. .. .++++.+++|
T Consensus 184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~a 263 (395)
T PRK07200 184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDA 263 (395)
T ss_pred ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 478999999985 5 566899999899999999988763 122 1 233454 22 4899999999
Q ss_pred CEEEEc
Q 006212 285 DFISLH 290 (656)
Q Consensus 285 DvV~l~ 290 (656)
|+|..-
T Consensus 264 DvVYtd 269 (395)
T PRK07200 264 DIVYPK 269 (395)
T ss_pred CEEEEc
Confidence 999885
No 377
>PRK12862 malic enzyme; Reviewed
Probab=94.12 E-value=2.7 Score=50.64 Aligned_cols=157 Identities=17% Similarity=0.115 Sum_probs=106.2
Q ss_pred cCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhcCCC-
Q 006212 175 FGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGM- 253 (656)
Q Consensus 175 ~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~- 253 (656)
.+|.|.|.-- .-+|=.+++-+++.+| ..|..+...+|.|.|.|.-|-.+|+.+...|.
T Consensus 160 ~~ip~f~DD~---~GTa~v~la~l~~a~~------------------~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~ 218 (763)
T PRK12862 160 MKIPVFHDDQ---HGTAIIVAAALLNGLK------------------LVGKDIEDVKLVASGAGAAALACLDLLVSLGVK 218 (763)
T ss_pred CCCceEecCc---ccHHHHHHHHHHHHHH------------------HhCCChhhcEEEEEChhHHHHHHHHHHHHcCCC
Confidence 3699999843 3344456777777665 34678889999999999999999999998888
Q ss_pred --EEEEECCCC----------Ch---hHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEc
Q 006212 254 --NVIAHDPYA----------PA---DKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNV 318 (656)
Q Consensus 254 --~Vi~~d~~~----------~~---~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINv 318 (656)
+++.+|..- .. ..++.. ...+|.|+++.+|+++=+- +-+.++++.++.|.+.++|.=.
T Consensus 219 ~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~--~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~v~~M~~~piifal 291 (763)
T PRK12862 219 RENIWVTDIKGVVYEGRTELMDPWKARYAQKT--DARTLAEVIEGADVFLGLS-----AAGVLKPEMVKKMAPRPLIFAL 291 (763)
T ss_pred cccEEEEcCCCeeeCCCCccccHHHHHHhhhc--ccCCHHHHHcCCCEEEEcC-----CCCCCCHHHHHHhccCCEEEeC
Confidence 788888531 11 112221 3348999999999986532 2478999999999999999999
Q ss_pred CCCchh-cHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCC
Q 006212 319 ARGGVI-DEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLG 370 (656)
Q Consensus 319 aRg~iv-de~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g 370 (656)
+.-..- ..++.+++ ..+.|.+.|-. ..| =+..|+++-|-++
T Consensus 292 sNP~~E~~p~~a~~~-~~~~i~atGrs---~~p-------~Q~NN~~~FPgi~ 333 (763)
T PRK12862 292 ANPTPEILPEEARAV-RPDAIIATGRS---DYP-------NQVNNVLCFPYIF 333 (763)
T ss_pred CCCcccCCHHHHHHh-cCCEEEEECCc---CCC-------Ccccceeeccchh
Confidence 864432 22222332 22456555511 111 1245777888765
No 378
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.10 E-value=0.16 Score=41.30 Aligned_cols=58 Identities=14% Similarity=0.254 Sum_probs=41.7
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEe----CCCCCHHHHHHHhc
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGV----DEEPNQDSLKEIGK 620 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~----D~~~~~e~l~~L~~ 620 (656)
+.+...|+||.++.|+..|.++++||..+++.... +..+..+.+ ..+.+.+.+++|++
T Consensus 3 l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~--~~~~~~f~i~~~~~~~~~~~~~~~i~~ 64 (70)
T cd04899 3 LELTALDRPGLLADVTRVLAELGLNIHSAKIATLG--ERAEDVFYVTDADGQPLDPERQEALRA 64 (70)
T ss_pred EEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecC--CEEEEEEEEECCCCCcCCHHHHHHHHH
Confidence 56678999999999999999999999999986443 355554433 22344556665543
No 379
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=94.01 E-value=0.11 Score=57.47 Aligned_cols=94 Identities=19% Similarity=0.259 Sum_probs=59.9
Q ss_pred cCCCEEEEEec-ChhHHHHHHHHhcC-CCEEEEECCCCCh-hHHHHcC-------C-eecCHHH-HhccCCEEEEccCCC
Q 006212 227 LVGKTLAVMGF-GKVGSEVARRAKGL-GMNVIAHDPYAPA-DKARAVG-------V-ELVSFDQ-ALATADFISLHMPLN 294 (656)
Q Consensus 227 l~gktvGIIGl-G~IG~~vA~~lk~~-G~~Vi~~d~~~~~-~~a~~~g-------~-~~~~l~e-ll~~aDvV~l~~Plt 294 (656)
...++|+|+|. |.+|+.+.+.|... +++|..+...... +...... . ...+++. .++++|+|++|+|..
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~ 115 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG 115 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence 35568999997 99999999999987 7888776433211 1101111 1 1112222 258899999999943
Q ss_pred ccccccccHHHHhcCCCCcEEEEcCCCchhcH
Q 006212 295 PTTSKIFNDETFAKMKKGVRIVNVARGGVIDE 326 (656)
Q Consensus 295 ~~T~~li~~~~l~~mK~gailINvaRg~ivde 326 (656)
...+....|+.|+.+||.+..-..+.
T Consensus 116 ------~s~~i~~~~~~g~~VIDlSs~fRl~~ 141 (381)
T PLN02968 116 ------TTQEIIKALPKDLKIVDLSADFRLRD 141 (381)
T ss_pred ------HHHHHHHHHhCCCEEEEcCchhccCC
Confidence 33445555678899999985544443
No 380
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=94.00 E-value=0.17 Score=53.79 Aligned_cols=64 Identities=11% Similarity=0.101 Sum_probs=44.5
Q ss_pred ccEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeC--CCCCH-HHHHHHhcC
Q 006212 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVD--EEPNQ-DSLKEIGKV 621 (656)
Q Consensus 558 ~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D--~~~~~-e~l~~L~~~ 621 (656)
.+.+.+..+|+||+|+.|++.|+++++||.+++..-...++.=.|.++++ ...+. ++-+.|.++
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~~~~~L~~~L~~l 73 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGLDEDALRAGFAPI 73 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCCCHHHHHHHHHHH
Confidence 34566778999999999999999999999999986333344445566664 33334 444444444
No 381
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.96 E-value=0.21 Score=41.86 Aligned_cols=58 Identities=21% Similarity=0.191 Sum_probs=43.4
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCC-----CC-CHHHHHHHhc
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE-----EP-NQDSLKEIGK 620 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~-----~~-~~e~l~~L~~ 620 (656)
+=+..+|+||.++.|+..|.++|+||..-++... ++..+..+.+.+ +. +++.+++|++
T Consensus 3 ~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~--~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~ 66 (74)
T cd04925 3 IELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH--NGRLACVIYVRDEETGAPIDDPIRLASIED 66 (74)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE--CCEEEEEEEEEcCcCCCCCCCHHHHHHHHH
Confidence 3456789999999999999999999999999854 677777766532 12 4455555543
No 382
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=93.86 E-value=0.19 Score=53.26 Aligned_cols=93 Identities=19% Similarity=0.267 Sum_probs=61.2
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCCh--hHHHHcC---C--eecCHHHH--hccCCEEEEccCCC
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPA--DKARAVG---V--ELVSFDQA--LATADFISLHMPLN 294 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~--~~a~~~g---~--~~~~l~el--l~~aDvV~l~~Plt 294 (656)
..+.|+++.|+|.|-.+++++..|+..|. +|.+++|.... +.+...+ . ....+.++ ..++|+|+.++|..
T Consensus 122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~G 201 (283)
T COG0169 122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVG 201 (283)
T ss_pred cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCC
Confidence 45679999999999999999999999995 79999987532 2222222 1 12223222 22699999999965
Q ss_pred ccccc---cccHHHHhcCCCCcEEEEcCC
Q 006212 295 PTTSK---IFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 295 ~~T~~---li~~~~l~~mK~gailINvaR 320 (656)
-.-.. .+. ...++++.++.|+--
T Consensus 202 m~~~~~~~~~~---~~~l~~~~~v~D~vY 227 (283)
T COG0169 202 MAGPEGDSPVP---AELLPKGAIVYDVVY 227 (283)
T ss_pred CCCCCCCCCCc---HHhcCcCCEEEEecc
Confidence 43221 222 344677777777643
No 383
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=93.72 E-value=0.23 Score=53.05 Aligned_cols=109 Identities=17% Similarity=0.153 Sum_probs=68.6
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHc-CCeec------------CHHHHhccCCEEEEccCCCc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAV-GVELV------------SFDQALATADFISLHMPLNP 295 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~-g~~~~------------~l~ell~~aDvV~l~~Plt~ 295 (656)
++|+|+|.|.||+-+|-+|...|.+|..+++.. ..+...+. |+... .-.+.....|+|++|+=..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~- 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY- 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-
Confidence 479999999999999999999999999998864 33322222 33211 1112245789999987532
Q ss_pred cccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEE
Q 006212 296 TTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQA 341 (656)
Q Consensus 296 ~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA 341 (656)
++...+ +.....+.+++.++-+--| +-.++.+.+.+...++.++
T Consensus 82 ~~~~al-~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~~~v~~g 125 (305)
T PRK05708 82 DAEPAV-ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPHARCIFA 125 (305)
T ss_pred hHHHHH-HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCCCcEEEE
Confidence 233222 2333446778877766433 3346667777766556554
No 384
>PRK10637 cysG siroheme synthase; Provisional
Probab=93.72 E-value=0.16 Score=57.40 Aligned_cols=91 Identities=15% Similarity=0.036 Sum_probs=66.2
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhH--HHHc-CCeec--C-HHHHhccCCEEEEccCCCccc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK--ARAV-GVELV--S-FDQALATADFISLHMPLNPTT 297 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~--a~~~-g~~~~--~-l~ell~~aDvV~l~~Plt~~T 297 (656)
-.+|.||+|.|||-|.++..=++.|..+|.+|.++.|....+. .... .+.+. + .++.++.+++|+.|+....
T Consensus 7 ~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~-- 84 (457)
T PRK10637 7 FCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDA-- 84 (457)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHH--
Confidence 3589999999999999999888888899999999998764432 1222 23322 1 2455788999888876433
Q ss_pred cccccHHHHhcCCCCcEEEEcC
Q 006212 298 SKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINva 319 (656)
+|......++...+++|++
T Consensus 85 ---~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 85 ---VNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred ---HhHHHHHHHHHcCcEEEEC
Confidence 5666666676667888876
No 385
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=93.69 E-value=0.13 Score=60.06 Aligned_cols=90 Identities=19% Similarity=0.260 Sum_probs=63.2
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-----CHH---H-HhccCCEEEEccCCCcccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-----SFD---Q-ALATADFISLHMPLNPTTS 298 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-----~l~---e-ll~~aDvV~l~~Plt~~T~ 298 (656)
...+-|+|+|++|+.+|+.|+..|.++++.|.+. ..+.+++.|.... +.+ + -+.+||.++++++..+++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 3579999999999999999999999999999876 3455666776432 222 2 2679999999999655443
Q ss_pred ccccHHHHhcCCCCcEEEEcCC
Q 006212 299 KIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINvaR 320 (656)
.++ ....++.|...++--+|
T Consensus 480 ~i~--~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 480 KIV--ELCQQHFPHLHILARAR 499 (601)
T ss_pred HHH--HHHHHHCCCCeEEEEeC
Confidence 332 23444556666665544
No 386
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=93.66 E-value=1.4 Score=48.07 Aligned_cols=67 Identities=19% Similarity=0.285 Sum_probs=48.7
Q ss_pred ccccCCCEEEEEec---ChhHHHHHHHHh-cCCCEEEEECCCC---Chh---HHHHcCCe--e-cCHHHHhccCCEEEEc
Q 006212 224 GVSLVGKTLAVMGF---GKVGSEVARRAK-GLGMNVIAHDPYA---PAD---KARAVGVE--L-VSFDQALATADFISLH 290 (656)
Q Consensus 224 g~~l~gktvGIIGl---G~IG~~vA~~lk-~~G~~Vi~~d~~~---~~~---~a~~~g~~--~-~~l~ell~~aDvV~l~ 290 (656)
|..+.|+||++||= +++..+++..+. -+|++|....|.. +.+ .+.+.|.. . .++++.+++||+|..-
T Consensus 154 g~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 233 (338)
T PRK08192 154 GRGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT 233 (338)
T ss_pred CCCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc
Confidence 33588999999998 578888888766 4499998887753 222 23344543 2 4899999999999883
No 387
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=93.66 E-value=0.21 Score=55.86 Aligned_cols=64 Identities=20% Similarity=0.204 Sum_probs=44.4
Q ss_pred CEEEEEecChhHHHHHH---HH---hcCCCEEEEECCCCCh-hHH--------HHcCC----e-ecCHHHHhccCCEEEE
Q 006212 230 KTLAVMGFGKVGSEVAR---RA---KGLGMNVIAHDPYAPA-DKA--------RAVGV----E-LVSFDQALATADFISL 289 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~---~l---k~~G~~Vi~~d~~~~~-~~a--------~~~g~----~-~~~l~ell~~aDvV~l 289 (656)
.+|+|||.|.+|...+. .+ ...|.+|..||+.... +.. ...+. . ..++++.++.||+|+.
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 37999999999998665 22 2236799999987522 111 11121 2 2378899999999999
Q ss_pred ccCC
Q 006212 290 HMPL 293 (656)
Q Consensus 290 ~~Pl 293 (656)
++|.
T Consensus 81 ai~~ 84 (423)
T cd05297 81 TIQV 84 (423)
T ss_pred eeEe
Confidence 9994
No 388
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.64 E-value=0.23 Score=41.37 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=39.8
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCC
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE 608 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~ 608 (656)
+.++|..+|+||..+.+++.|..++.||-.-++... ++|.++-.+.+-+
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt-~dG~~LDtF~V~d 50 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFST-DDGLALDIFVVTG 50 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEc-CCCeEEEEEEEec
Confidence 578888999999999999999999999999999765 4565655544433
No 389
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=93.64 E-value=0.076 Score=53.07 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=32.7
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeec
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTF 595 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~ 595 (656)
+.+.+.-.|+||++..|+..|++++|||.+++.....
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~ 132 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQP 132 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeec
Confidence 5566778999999999999999999999999996543
No 390
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=93.61 E-value=0.19 Score=46.03 Aligned_cols=98 Identities=22% Similarity=0.340 Sum_probs=61.1
Q ss_pred CEEEEEe----cChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCee-cCHHHHhccCCEEEEccCCCccccccccHH
Q 006212 230 KTLAVMG----FGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFNDE 304 (656)
Q Consensus 230 ktvGIIG----lG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~~~ 304 (656)
|+++||| -+..|..+.+.++..|++|+..+|.... -.|... .+++|.-...|++++++|. +.+..++.+
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~----i~G~~~y~sl~e~p~~iDlavv~~~~-~~~~~~v~~- 74 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGE----ILGIKCYPSLAEIPEPIDLAVVCVPP-DKVPEIVDE- 74 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSE----ETTEE-BSSGGGCSST-SEEEE-S-H-HHHHHHHHH-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceE----ECcEEeeccccCCCCCCCEEEEEcCH-HHHHHHHHH-
Confidence 6899999 7899999999999999999999987521 124443 4788844789999999992 233344422
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 305 ~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
+..+..+.+++..+ ..++++.+..++..+
T Consensus 75 -~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi 103 (116)
T PF13380_consen 75 -AAALGVKAVWLQPG----AESEELIEAAREAGI 103 (116)
T ss_dssp -HHHHT-SEEEE-TT----S--HHHHHHHHHTT-
T ss_pred -HHHcCCCEEEEEcc----hHHHHHHHHHHHcCC
Confidence 23345677888877 345566666666544
No 391
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=93.60 E-value=0.081 Score=50.14 Aligned_cols=63 Identities=22% Similarity=0.232 Sum_probs=44.9
Q ss_pred CEEEEEec-ChhHHHHHHHHhc--CCCEEEEECCCCChh--HHHHc-------CC--e-ecCHHHHhccCCEEEEccC
Q 006212 230 KTLAVMGF-GKVGSEVARRAKG--LGMNVIAHDPYAPAD--KARAV-------GV--E-LVSFDQALATADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGl-G~IG~~vA~~lk~--~G~~Vi~~d~~~~~~--~a~~~-------g~--~-~~~l~ell~~aDvV~l~~P 292 (656)
.+|+|||. |.+|+.+|..|.. ++-++..||...... .+.++ +. . .....+.+++||+|+++.-
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG 78 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence 37999999 9999999999884 456899999874221 11111 11 1 1256678999999999884
No 392
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.58 E-value=0.22 Score=51.96 Aligned_cols=45 Identities=31% Similarity=0.467 Sum_probs=37.1
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCE-EEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMN-VIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~-Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|++|.|+|.|.||...++.++.+|.+ |++.|+.. ..+.++++|+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga 166 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGA 166 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC
Confidence 589999999999999999999999986 88887654 3455666665
No 393
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=93.55 E-value=0.16 Score=53.23 Aligned_cols=30 Identities=30% Similarity=0.583 Sum_probs=25.7
Q ss_pred EEEEEe-cChhHHHHHHHHhc-CCCEEEE-ECC
Q 006212 231 TLAVMG-FGKVGSEVARRAKG-LGMNVIA-HDP 260 (656)
Q Consensus 231 tvGIIG-lG~IG~~vA~~lk~-~G~~Vi~-~d~ 260 (656)
+|+|+| +|+||+.+++.+.. -++++.+ +|+
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~ 35 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFER 35 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence 799999 79999999999885 5898776 674
No 394
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=93.46 E-value=0.12 Score=53.48 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=32.4
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCC
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~ 261 (656)
..|.+++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 46899999999999999999999998886 67777754
No 395
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.45 E-value=0.19 Score=56.26 Aligned_cols=66 Identities=20% Similarity=0.198 Sum_probs=48.4
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh---hHHHH--cCCeec--C-HHHHhccCCEEEEccC
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA---DKARA--VGVELV--S-FDQALATADFISLHMP 292 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~---~~a~~--~g~~~~--~-l~ell~~aDvV~l~~P 292 (656)
+.+|++.|+|.|.+|.++|+.|...|++|.++|..... ....+ .|+.+. . -+..+.++|+|+..--
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spg 76 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPG 76 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCC
Confidence 56899999999999999999999999999999976532 12222 366442 1 2345578999987543
No 396
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.30 E-value=0.22 Score=51.04 Aligned_cols=91 Identities=9% Similarity=0.077 Sum_probs=61.9
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhH--HHHc-CCeec--CH-HHHhccCCEEEEccCCCccc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK--ARAV-GVELV--SF-DQALATADFISLHMPLNPTT 297 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~--a~~~-g~~~~--~l-~ell~~aDvV~l~~Plt~~T 297 (656)
-.++.|++|.|||-|.++..=++.|..+|.+|.++.|....+. .... .+.+. ++ .+.+..+++|+.|+....
T Consensus 20 ~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~-- 97 (223)
T PRK05562 20 SLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEK-- 97 (223)
T ss_pred EEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHH--
Confidence 3467799999999999999888888899999999999875432 1122 23322 11 234678899988876322
Q ss_pred cccccHHHHhcCCCCcEEEEcC
Q 006212 298 SKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINva 319 (656)
+|+......+.-.+++|++
T Consensus 98 ---vN~~I~~~a~~~~~lvn~v 116 (223)
T PRK05562 98 ---LNNKIRKHCDRLYKLYIDC 116 (223)
T ss_pred ---HHHHHHHHHHHcCCeEEEc
Confidence 5665555565545666653
No 397
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=93.27 E-value=0.19 Score=53.68 Aligned_cols=63 Identities=19% Similarity=0.355 Sum_probs=47.2
Q ss_pred CEEEEEecChhHH-HHHHHHhcCC--CEEEE-ECCCCC--hhHHHHcCCe--ecCHHHHhcc--CCEEEEccC
Q 006212 230 KTLAVMGFGKVGS-EVARRAKGLG--MNVIA-HDPYAP--ADKARAVGVE--LVSFDQALAT--ADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGlG~IG~-~vA~~lk~~G--~~Vi~-~d~~~~--~~~a~~~g~~--~~~l~ell~~--aDvV~l~~P 292 (656)
.++||||+|.|++ ..+..++..+ +++.+ +|++.. ...+.+.|+. +.++++++++ .|+|++|+|
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp 76 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATP 76 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCC
Confidence 4799999997775 4777787765 45544 688763 3456677874 4589999986 599999999
No 398
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=93.25 E-value=1.3 Score=50.79 Aligned_cols=96 Identities=20% Similarity=0.242 Sum_probs=62.6
Q ss_pred ccccCCCEEEEEec---ChhHHHHHHHHhcCC-CEEEEECCCC---Ch---hHHHHcCCe--e-cCHHHHhccCCEE--E
Q 006212 224 GVSLVGKTLAVMGF---GKVGSEVARRAKGLG-MNVIAHDPYA---PA---DKARAVGVE--L-VSFDQALATADFI--S 288 (656)
Q Consensus 224 g~~l~gktvGIIGl---G~IG~~vA~~lk~~G-~~Vi~~d~~~---~~---~~a~~~g~~--~-~~l~ell~~aDvV--~ 288 (656)
|..+.|++|++||= +++..+++..+..|| |+|....|.. +. +.+++.|.. . .++++.+++||+. .
T Consensus 169 G~~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~tdvw 248 (525)
T PRK13376 169 NFDNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDVAKIW 248 (525)
T ss_pred CCCcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCccceE
Confidence 33578999999998 589999999999998 9999887743 22 233344643 2 4899999999952 2
Q ss_pred EccCCCcc--------------ccccccHHHHhcCCCCcEEEEcC
Q 006212 289 LHMPLNPT--------------TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 289 l~~Plt~~--------------T~~li~~~~l~~mK~gailINva 319 (656)
..+....+ -...++++.++.+|+++++.-|.
T Consensus 249 ~~~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcL 293 (525)
T PRK13376 249 YFTRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPL 293 (525)
T ss_pred EEeccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCC
Confidence 21111111 12234566666666666666664
No 399
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.21 E-value=0.21 Score=55.97 Aligned_cols=106 Identities=22% Similarity=0.188 Sum_probs=64.2
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh---hHHHH--cCCeec---CHHHHhccCCEEEEccCCCccccc-
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA---DKARA--VGVELV---SFDQALATADFISLHMPLNPTTSK- 299 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~---~~a~~--~g~~~~---~l~ell~~aDvV~l~~Plt~~T~~- 299 (656)
.-+++|+|+|.+|.++|+.|+..|++|.++|..... +...+ .|+... .-.+.+.++|+|+.. |.-+.+..
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~s-p~i~~~~p~ 84 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIIS-PGLALDTPA 84 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEEC-CCCCCCCHH
Confidence 458999999999999999999999999999975421 22222 366542 123456789988664 33332221
Q ss_pred ----------cccHH-HHhc-CCCCcEEEEcCCCchhcHHHHHHhHhc
Q 006212 300 ----------IFNDE-TFAK-MKKGVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 300 ----------li~~~-~l~~-mK~gailINvaRg~ivde~aL~~aL~~ 335 (656)
++.+. .+.. ++...+-|--+.|+--...-+...|+.
T Consensus 85 ~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~ 132 (448)
T PRK03803 85 LRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA 132 (448)
T ss_pred HHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 23332 2222 333233333346777666656666654
No 400
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=93.19 E-value=0.14 Score=54.41 Aligned_cols=95 Identities=25% Similarity=0.370 Sum_probs=68.8
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCee---------------cC----------H
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVEL---------------VS----------F 277 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~---------------~~----------l 277 (656)
+-...+.++-++|+|-+|-..+-..+..|+-|..+|-.. ..+.-++.|.++ .+ +
T Consensus 159 agtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~ 238 (356)
T COG3288 159 AGTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELV 238 (356)
T ss_pred cccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHH
Confidence 345677788999999999999998899999999998554 222222233211 11 3
Q ss_pred HHHhccCCEEEEc--cCCCccccccccHHHHhcCCCCcEEEEcC
Q 006212 278 DQALATADFISLH--MPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 278 ~ell~~aDvV~l~--~Plt~~T~~li~~~~l~~mK~gailINva 319 (656)
.+.+++.|+|+.. +|..| --.++.++..+.||||.+|||.+
T Consensus 239 a~~~~~~DivITTAlIPGrp-AP~Lvt~~mv~sMkpGSViVDlA 281 (356)
T COG3288 239 AEQAKEVDIVITTALIPGRP-APKLVTAEMVASMKPGSVIVDLA 281 (356)
T ss_pred HHHhcCCCEEEEecccCCCC-CchhhHHHHHHhcCCCcEEEEeh
Confidence 4568899999874 35444 34578899999999999999986
No 401
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.17 E-value=0.36 Score=51.50 Aligned_cols=46 Identities=39% Similarity=0.538 Sum_probs=40.8
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC-ChhHHHHcCCe
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVE 273 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~-~~~~a~~~g~~ 273 (656)
.|.|++|+|+|.+|.++++-+|++|. +|++.|-+. ..+.+++.|+.
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaT 239 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGAT 239 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcc
Confidence 58999999999999999999999985 899999886 45778888873
No 402
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.15 E-value=0.2 Score=56.80 Aligned_cols=64 Identities=22% Similarity=0.180 Sum_probs=46.2
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC--Chh---HHHHcCCeec---CHHHHhccCCEEEEcc
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA--PAD---KARAVGVELV---SFDQALATADFISLHM 291 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~--~~~---~a~~~g~~~~---~l~ell~~aDvV~l~~ 291 (656)
+.||+++|+|+|.-|.+.|+.|+..|.+|+++|... ... ...+ +.... ...+.+.++|+|+..-
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~d~vV~Sp 77 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALAD-AALLVETEASAQRLAAFDVVVKSP 77 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhh-cCEEEeCCCChHHccCCCEEEECC
Confidence 468999999999999999999999999999999643 111 1222 33221 1235668899987754
No 403
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=93.15 E-value=0.26 Score=52.86 Aligned_cols=87 Identities=20% Similarity=0.188 Sum_probs=55.6
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-CHHH-HhccCCEEEEccCCCccccccccHH
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQ-ALATADFISLHMPLNPTTSKIFNDE 304 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~l~e-ll~~aDvV~l~~Plt~~T~~li~~~ 304 (656)
.|.+|.|.|.|.+|...++.++.+|.+|++.++.. ..+.++++|+..+ +..+ .-...|+++.+.... . . -..
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~-~---~-~~~ 239 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG-G---L-VPP 239 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH-H---H-HHH
Confidence 48899999999999999999999999999988765 4567788887432 2111 112245555444321 1 1 123
Q ss_pred HHhcCCCCcEEEEcC
Q 006212 305 TFAKMKKGVRIVNVA 319 (656)
Q Consensus 305 ~l~~mK~gailINva 319 (656)
.++.++++..++.++
T Consensus 240 ~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 240 ALEALDRGGVLAVAG 254 (329)
T ss_pred HHHhhCCCcEEEEEe
Confidence 444556666655554
No 404
>PLN02602 lactate dehydrogenase
Probab=93.10 E-value=0.48 Score=51.83 Aligned_cols=89 Identities=15% Similarity=0.203 Sum_probs=55.6
Q ss_pred CEEEEEecChhHHHHHHHHhcCC--CEEEEECCCCChhH--HHHc-------C-Ceec---CHHHHhccCCEEEEccCCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAPADK--ARAV-------G-VELV---SFDQALATADFISLHMPLN 294 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G--~~Vi~~d~~~~~~~--a~~~-------g-~~~~---~l~ell~~aDvV~l~~Plt 294 (656)
++|+|||.|.+|..+|..+...| -++..+|....... +.++ + .... +. +.+++||+|+++.-..
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG~~ 116 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAGAR 116 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCCCC
Confidence 69999999999999999988555 47999997653211 1111 1 1221 33 3489999999986432
Q ss_pred c---cccc-cc--cH-------HHHhcCCCCcEEEEcC
Q 006212 295 P---TTSK-IF--ND-------ETFAKMKKGVRIVNVA 319 (656)
Q Consensus 295 ~---~T~~-li--~~-------~~l~~mK~gailINva 319 (656)
. +++. ++ |. ..+....|.+++++++
T Consensus 117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 1 2331 11 11 1223356778888887
No 405
>PRK04148 hypothetical protein; Provisional
Probab=93.08 E-value=0.22 Score=47.01 Aligned_cols=64 Identities=25% Similarity=0.341 Sum_probs=49.0
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec--C----HHHHhccCCEEEEccC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV--S----FDQALATADFISLHMP 292 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~--~----l~ell~~aDvV~l~~P 292 (656)
+++++..||+| -|..+|..|...|.+|++.|.+. ..+.+++.++..+ | --++.+.+|+|.-+=|
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp 86 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP 86 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC
Confidence 56889999999 99999999999999999999876 3445566665432 2 2356778888877766
No 406
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=93.07 E-value=0.29 Score=60.32 Aligned_cols=66 Identities=15% Similarity=0.303 Sum_probs=46.5
Q ss_pred CCCEEEEEecChhHHHHHHHHhcC-CCE-------------EEEECCCCCh-h-HHHHc-CC---ee--cCHHHH---hc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGL-GMN-------------VIAHDPYAPA-D-KARAV-GV---EL--VSFDQA---LA 282 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~-G~~-------------Vi~~d~~~~~-~-~a~~~-g~---~~--~~l~el---l~ 282 (656)
+.|+|+|||.|.||+.+|+.|... +.+ |.+.|++... + .+... ++ .. .+.+++ ++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 477999999999999999999754 344 8888988632 2 22222 42 22 244554 46
Q ss_pred cCCEEEEccCC
Q 006212 283 TADFISLHMPL 293 (656)
Q Consensus 283 ~aDvV~l~~Pl 293 (656)
++|+|+.|+|.
T Consensus 648 ~~DaVIsalP~ 658 (1042)
T PLN02819 648 QVDVVISLLPA 658 (1042)
T ss_pred CCCEEEECCCc
Confidence 89999999994
No 407
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=93.04 E-value=0.2 Score=58.31 Aligned_cols=127 Identities=15% Similarity=0.196 Sum_probs=81.6
Q ss_pred CceeecCC-CCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccc-cccCCCEEEEEecChhHHHHHHHHhcCCC
Q 006212 176 GCLVVNAP-IANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVG-VSLVGKTLAVMGFGKVGSEVARRAKGLGM 253 (656)
Q Consensus 176 GI~V~n~p-~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g-~~l~gktvGIIGlG~IG~~vA~~lk~~G~ 253 (656)
|-+++|-. -.+....||.++-|=|-++| |.--...+ ..|.+.+|.|||.|-+|..+|+.|.+.|.
T Consensus 296 ~pr~~dL~~~mdP~~la~~avdlnlkLmk-------------WRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GV 362 (664)
T TIGR01381 296 QPISVDLSKEFDPKRLAERSVDLNLKLMK-------------WRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGV 362 (664)
T ss_pred CceEechhhhcCHHHHHHHHHHHHHHHHh-------------hhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCC
Confidence 33444443 35667778888777766665 75432222 46889999999999999999999999987
Q ss_pred -EEEEECCCC------------Chh-----------HH----HHc--CCe------e-------c-------------CH
Q 006212 254 -NVIAHDPYA------------PAD-----------KA----RAV--GVE------L-------V-------------SF 277 (656)
Q Consensus 254 -~Vi~~d~~~------------~~~-----------~a----~~~--g~~------~-------~-------------~l 277 (656)
++..+|... ..+ .| ++. +++ . + .+
T Consensus 363 g~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l 442 (664)
T TIGR01381 363 RHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARL 442 (664)
T ss_pred CeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHH
Confidence 566665310 000 00 111 111 0 1 24
Q ss_pred HHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 006212 278 DQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 278 ~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINva 319 (656)
+++++++|+|+.|+- +-++|.+++..-.. .+..+|+.+
T Consensus 443 ~~Li~~~DvV~d~tD-n~esR~L~n~~c~~---~~kplI~aA 480 (664)
T TIGR01381 443 EQLIKDHDVVFLLLD-SREARWLPTVLCSR---HKKIAISAA 480 (664)
T ss_pred HHHHhhCCEEEECCC-CHHHHHHHHHHHHH---hCCCEEEEE
Confidence 578999999999987 66788888765553 345666665
No 408
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=93.02 E-value=0.18 Score=54.89 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=33.4
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCC
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~ 261 (656)
..|..++|.|||.|.+|..+|+.|...|. ++..+|..
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46899999999999999999999998898 88888865
No 409
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.92 E-value=0.27 Score=54.10 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=50.1
Q ss_pred hhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHh
Q 006212 170 QAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAK 249 (656)
Q Consensus 170 ~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk 249 (656)
.+..+.|-.+...+......... -.|++ .-+.|... .-..|.+++|.|+|+|.+|..+|+.|.
T Consensus 93 ~~W~~~g~p~~~~~~~s~~~~~~--------y~r~i-------~l~~~g~~--~q~~l~~~~VlvvG~GG~Gs~ia~~La 155 (376)
T PRK08762 93 SAWKDAGLPLERPRLLTDEQDER--------YSRHL-------RLPEVGEE--GQRRLLEARVLLIGAGGLGSPAALYLA 155 (376)
T ss_pred HHHHhcCCccccccCCCHHHHHH--------HHHhc-------chhhcCHH--HHHHHhcCcEEEECCCHHHHHHHHHHH
Confidence 44556677777666655444322 22332 22234321 124689999999999999999999999
Q ss_pred cCCC-EEEEECCC
Q 006212 250 GLGM-NVIAHDPY 261 (656)
Q Consensus 250 ~~G~-~Vi~~d~~ 261 (656)
..|. ++..+|+.
T Consensus 156 ~~Gvg~i~lvD~d 168 (376)
T PRK08762 156 AAGVGTLGIVDHD 168 (376)
T ss_pred HcCCCeEEEEeCC
Confidence 9887 68888875
No 410
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=92.82 E-value=0.35 Score=54.07 Aligned_cols=67 Identities=15% Similarity=0.125 Sum_probs=47.9
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHc--CCeec-----CHH----HHhccCCEEEEccCC
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAV--GVELV-----SFD----QALATADFISLHMPL 293 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~--g~~~~-----~l~----ell~~aDvV~l~~Pl 293 (656)
+..+++.|+|+|.+|+.+++.|...|.+|+++|.... .+...+. ++..+ +.+ ..+.++|.|+++++.
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~ 307 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTND 307 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCC
Confidence 4578999999999999999999999999999987753 2223222 33221 222 235788888887774
No 411
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=92.82 E-value=0.22 Score=58.44 Aligned_cols=88 Identities=18% Similarity=0.277 Sum_probs=60.8
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-----CHH----HHhccCCEEEEccCCCcccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-----SFD----QALATADFISLHMPLNPTTS 298 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-----~l~----ell~~aDvV~l~~Plt~~T~ 298 (656)
...+-|+|+|++|+.+|+.|++.|.++++.|.+. ..+.+++.|.... +.+ .-+.+||.++++++..+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 4679999999999999999999999999998876 3455666676432 232 23679999999998554433
Q ss_pred ccccHHHHhcCCCCcEEEEc
Q 006212 299 KIFNDETFAKMKKGVRIVNV 318 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINv 318 (656)
.+. ...+.+.|+..++--
T Consensus 480 ~i~--~~ar~~~p~~~iiaR 497 (621)
T PRK03562 480 QLV--ELVKEHFPHLQIIAR 497 (621)
T ss_pred HHH--HHHHHhCCCCeEEEE
Confidence 332 233344556555443
No 412
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.77 E-value=0.5 Score=52.84 Aligned_cols=108 Identities=18% Similarity=0.172 Sum_probs=64.7
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChh--HHHHcCCeec---CHHHHhccCCEEEEccCCCcccccc-
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD--KARAVGVELV---SFDQALATADFISLHMPLNPTTSKI- 300 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~--~a~~~g~~~~---~l~ell~~aDvV~l~~Plt~~T~~l- 300 (656)
+.+|++.|+|+|..|.+.++.|+..|.+|.++|...... ...+.|+... .-.+.++..|+| ++.|..+.....
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~v-v~spgi~~~~~~~ 82 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLI-VASPGIALAHPSL 82 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEE-EECCCCCCCCHHH
Confidence 568899999999999999999999999999999654221 1123366542 123456778866 455544433222
Q ss_pred ----------ccH-HHHhcCCCCcEE-EEcCCCchhcHHHHHHhHhc
Q 006212 301 ----------FND-ETFAKMKKGVRI-VNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 301 ----------i~~-~~l~~mK~gail-INvaRg~ivde~aL~~aL~~ 335 (656)
+.+ +.+..+-+..+| |--+.|+--...-+...|+.
T Consensus 83 ~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 129 (438)
T PRK03806 83 SAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA 129 (438)
T ss_pred HHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 222 223222222233 33335777656666666654
No 413
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=92.75 E-value=0.31 Score=56.72 Aligned_cols=69 Identities=17% Similarity=0.305 Sum_probs=49.8
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-h-hHHHHcCC--eecC---HHHHhccCCEEEEccCCC
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-A-DKARAVGV--ELVS---FDQALATADFISLHMPLN 294 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~-~~a~~~g~--~~~~---l~ell~~aDvV~l~~Plt 294 (656)
....|+|||||-|..|+.+++.++.+|++|+++|+... . ....+.-+ .+.+ +.++++++|+|+.+....
T Consensus 19 ~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e~v 94 (577)
T PLN02948 19 GVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIEHV 94 (577)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecCCC
Confidence 37789999999999999999999999999999998652 1 11111111 1223 556678899998765533
No 414
>PRK12861 malic enzyme; Reviewed
Probab=92.70 E-value=5 Score=48.21 Aligned_cols=119 Identities=16% Similarity=0.137 Sum_probs=89.5
Q ss_pred CceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhcCCC--
Q 006212 176 GCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGM-- 253 (656)
Q Consensus 176 GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~-- 253 (656)
.|.|.|+-- .-+|=-+++-+++.+| ..|..+...+|.|.|.|.-|-.+|+.+...|.
T Consensus 157 ~ipvf~DD~---qGTa~v~lA~llnal~------------------~~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~ 215 (764)
T PRK12861 157 KIPVFHDDQ---HGTAITVSAAFINGLK------------------VVGKSIKEVKVVTSGAGAAALACLDLLVDLGLPV 215 (764)
T ss_pred CCCeecccc---chHHHHHHHHHHHHHH------------------HhCCChhHcEEEEECHhHHHHHHHHHHHHcCCCh
Confidence 799999833 3344456777777776 34678889999999999999999999998898
Q ss_pred -EEEEECCCC----------Ch---hHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 006212 254 -NVIAHDPYA----------PA---DKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 254 -~Vi~~d~~~----------~~---~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINva 319 (656)
+++.+|..- .. ..++.. ...+|.|+++.+|+++= +. +-+.++++.++.|.+.++|.=.+
T Consensus 216 ~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~--~~~~L~eai~~advliG-~S----~~g~ft~e~v~~Ma~~PIIFaLs 288 (764)
T PRK12861 216 ENIWVTDIEGVVYRGRTTLMDPDKERFAQET--DARTLAEVIGGADVFLG-LS----AGGVLKAEMLKAMAARPLILALA 288 (764)
T ss_pred hhEEEEcCCCeeeCCCcccCCHHHHHHHhhc--CCCCHHHHHhcCCEEEE-cC----CCCCCCHHHHHHhccCCEEEECC
Confidence 788888431 11 112221 33489999999998754 33 25789999999999999999998
Q ss_pred CCc
Q 006212 320 RGG 322 (656)
Q Consensus 320 Rg~ 322 (656)
.-.
T Consensus 289 NPt 291 (764)
T PRK12861 289 NPT 291 (764)
T ss_pred CCC
Confidence 644
No 415
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=92.68 E-value=0.38 Score=46.68 Aligned_cols=74 Identities=16% Similarity=0.257 Sum_probs=55.5
Q ss_pred CccEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCC--CCCHHHHHHHhcCCCccEEEEE
Q 006212 557 EGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE--EPNQDSLKEIGKVPAIEEYTLL 630 (656)
Q Consensus 557 ~~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~--~~~~e~l~~L~~~~~V~~v~~v 630 (656)
..++|.+...|+||++..+..+++..|+||..+.++..+..+.+-|.+-+.. ..-+++.++|.++-+|..|.-+
T Consensus 3 m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kLidV~kV~d~ 78 (163)
T COG0440 3 MRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKLIDVLKVLDL 78 (163)
T ss_pred ceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCcchHHHHHHHHHhhccceeEEEc
Confidence 3567777888999999999999999999999999998776666666555555 3345666666666555555443
No 416
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=92.62 E-value=0.62 Score=49.42 Aligned_cols=69 Identities=22% Similarity=0.243 Sum_probs=48.5
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCCh--hHHHHc----CC---eecC---HHHHhccCCEEEEccC
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPA--DKARAV----GV---ELVS---FDQALATADFISLHMP 292 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~--~~a~~~----g~---~~~~---l~ell~~aDvV~l~~P 292 (656)
.+.||++.|+|.|-.|++++-.|...|+ +|.++|+.... ..+... +. ...+ +++.+..+|+|+.++|
T Consensus 124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp 203 (283)
T PRK14027 124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP 203 (283)
T ss_pred CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCC
Confidence 4568999999999999999999998887 78899987422 122211 11 1122 2345678899999988
Q ss_pred CC
Q 006212 293 LN 294 (656)
Q Consensus 293 lt 294 (656)
..
T Consensus 204 ~G 205 (283)
T PRK14027 204 MG 205 (283)
T ss_pred CC
Confidence 44
No 417
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=92.62 E-value=0.18 Score=47.68 Aligned_cols=80 Identities=31% Similarity=0.449 Sum_probs=48.6
Q ss_pred EEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCC
Q 006212 232 LAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKK 311 (656)
Q Consensus 232 vGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~ 311 (656)
+-|+|-|.+++++++.++.+|++|.++|++.. .++.++-+ .+.+... + .+.+ .+.+
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e----------------~~~~~~~~-~~~~~~~----~--~~~~-~~~~ 56 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE----------------RFPEADEV-ICIPPDD----I--LEDL-EIDP 56 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC----------------C-TTSSEE-ECSHHHH----H--HHHC--S-T
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc----------------ccCCCCcc-EecChHH----H--Hhcc-CCCC
Confidence 46899999999999999999999999998742 11234442 2332110 0 0111 3566
Q ss_pred CcEEEEcCCCchhcHHHHHHhHhcC
Q 006212 312 GVRIVNVARGGVIDEEALVRALDSG 336 (656)
Q Consensus 312 gailINvaRg~ivde~aL~~aL~~g 336 (656)
++.+| +.++.-.|.+.|..+|+..
T Consensus 57 ~t~Vv-~th~h~~D~~~L~~~l~~~ 80 (136)
T PF13478_consen 57 NTAVV-MTHDHELDAEALEAALASP 80 (136)
T ss_dssp T-EEE---S-CCCHHHHHHHHTTSS
T ss_pred CeEEE-EcCCchhHHHHHHHHHcCC
Confidence 66666 7788888888888888773
No 418
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=92.44 E-value=0.29 Score=58.31 Aligned_cols=70 Identities=16% Similarity=0.247 Sum_probs=54.5
Q ss_pred EEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEE--EEeCCCCCH-HHHHHHhcCCCccEEEE
Q 006212 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMA--IGVDEEPNQ-DSLKEIGKVPAIEEYTL 629 (656)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~--i~~D~~~~~-e~l~~L~~~~~V~~v~~ 629 (656)
.|.+...|++|+++.|++++++.++||.++++....+++.+.+. +++.+...- .++.+|+++++|.+|+-
T Consensus 668 ~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~~L~~l~~~L~~i~~V~~v~R 740 (743)
T PRK10872 668 VVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARR 740 (743)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHHHHHHHHHHHhcCCCcCeEEe
Confidence 45567899999999999999999999999998544435666555 444443322 89999999999999864
No 419
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=92.40 E-value=0.28 Score=52.66 Aligned_cols=140 Identities=15% Similarity=0.184 Sum_probs=80.1
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeec-------------CHHHHhccCCEEEEccCCCcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-------------SFDQALATADFISLHMPLNPT 296 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~-------------~l~ell~~aDvV~l~~Plt~~ 296 (656)
.+|.|+|.|.||+-++.+|...|..|+..-+....+..++.|.... .-.+.+..+|+|++++- +-+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vK-a~q 79 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVK-AYQ 79 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEec-ccc
Confidence 4799999999999999999998977777665544455555564321 12345678999999875 333
Q ss_pred ccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcC-CeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCc
Q 006212 297 TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG-VVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGAST 373 (656)
Q Consensus 297 T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g-~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T 373 (656)
+...+ ......+++.+.|+=.--| +=.++.+....... .+.|...-....+.+ ..-.......+.+.+.-+...
T Consensus 80 ~~~al-~~l~~~~~~~t~vl~lqNG-~g~~e~l~~~~~~~~il~G~~~~~a~~~~~-g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 80 LEEAL-PSLAPLLGPNTVVLFLQNG-LGHEEELRKILPKETVLGGVTTHGAVREGP-GHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred HHHHH-HHhhhcCCCCcEEEEEeCC-CcHHHHHHHhCCcceEEEEEeeeeeEecCC-ceEEEecCCcEEEccCCCCch
Confidence 44333 3344457777666633222 22344555555544 343322221122211 112233345677777666553
No 420
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=92.36 E-value=0.94 Score=47.11 Aligned_cols=83 Identities=22% Similarity=0.304 Sum_probs=67.0
Q ss_pred HHHHHHHHhcCCCEEEEECCCCC------hhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCc
Q 006212 241 GSEVARRAKGLGMNVIAHDPYAP------ADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGV 313 (656)
Q Consensus 241 G~~vA~~lk~~G~~Vi~~d~~~~------~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~ga 313 (656)
|..+|-.+...|..|+..||+.. .++..+.|++.+ +=.+.++.+.+.+|.+|....|-++. ++.+..++.|+
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA 111 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA 111 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence 67788888888999999999752 234567799887 44578899999999999887777664 67888999999
Q ss_pred EEEEcCCCchh
Q 006212 314 RIVNVARGGVI 324 (656)
Q Consensus 314 ilINvaRg~iv 324 (656)
+|.|+..-..+
T Consensus 112 VicnTCT~sp~ 122 (340)
T COG4007 112 VICNTCTVSPV 122 (340)
T ss_pred EecccccCchh
Confidence 99999875544
No 421
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=92.31 E-value=0.46 Score=51.80 Aligned_cols=63 Identities=11% Similarity=0.123 Sum_probs=49.6
Q ss_pred CEEEEEecChhHHHHHHHHhcC--CCEEEE-ECCCC--ChhHHHHcCCe-ecCHHHHhccCCEEEEccCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL--GMNVIA-HDPYA--PADKARAVGVE-LVSFDQALATADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~--G~~Vi~-~d~~~--~~~~a~~~g~~-~~~l~ell~~aDvV~l~~Pl 293 (656)
.+|||||. .+|+..++.++.. +.++.+ +|+.. ..+.+++.|+. +.++++++.+.|++++++|.
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt 72 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRS 72 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCC
Confidence 58999999 6899999888865 578776 68765 23456667875 45899999999999999984
No 422
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=92.26 E-value=0.098 Score=46.12 Aligned_cols=61 Identities=18% Similarity=0.348 Sum_probs=40.8
Q ss_pred CEEEEEecChhHHHHHHHHh-cCCCEEE-EE--CCCCChhHHHHcCCeec-CHHHHhcc--CCEEEEccC
Q 006212 230 KTLAVMGFGKVGSEVARRAK-GLGMNVI-AH--DPYAPADKARAVGVELV-SFDQALAT--ADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk-~~G~~Vi-~~--d~~~~~~~a~~~g~~~~-~l~ell~~--aDvV~l~~P 292 (656)
.++.|+|.|+.|++++.... ..|+++. ++ ||...-+ .-.|+... +++++.+. .|+-++++|
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~--~i~gipV~~~~~~l~~~~~i~iaii~VP 71 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGK--EIGGIPVYGSMDELEEFIEIDIAIITVP 71 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTS--EETTEEEESSHHHHHHHCTTSEEEEES-
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCc--EECCEEeeccHHHhhhhhCCCEEEEEcC
Confidence 47999999999999986554 4465533 34 4442111 11256666 78887776 999999999
No 423
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=92.24 E-value=0.23 Score=53.07 Aligned_cols=85 Identities=19% Similarity=0.297 Sum_probs=56.2
Q ss_pred EEEEEecChhHHHHHHHHhcCCC-EEEEECCCC------------ChhH--------------HHHc--CCee--c----
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA------------PADK--------------ARAV--GVEL--V---- 275 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~------------~~~~--------------a~~~--g~~~--~---- 275 (656)
+|.|+|.|-+|..+|+.|...|. ++..+|... ..+. .++. +++. .
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 58999999999999999998886 566666321 0000 0111 1111 0
Q ss_pred --------------------CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 006212 276 --------------------SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 276 --------------------~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINva 319 (656)
.++++++++|+|+.++- +-+++.+++..-.. .+..+||.+
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tD-n~esR~L~~~~~~~---~~k~~I~aa 140 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTD-SRESRWLPTLLSAA---KNKLVINAA 140 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECCC-CHHHHHHHHHHHHH---hCCcEEEEE
Confidence 14688999999999995 66788887765544 233677765
No 424
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=92.19 E-value=0.43 Score=51.61 Aligned_cols=30 Identities=33% Similarity=0.634 Sum_probs=24.6
Q ss_pred EEEEEecChhHHHHHHHHhcC----CCEEEEECC
Q 006212 231 TLAVMGFGKVGSEVARRAKGL----GMNVIAHDP 260 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~----G~~Vi~~d~ 260 (656)
+|||+|+|+||+.+.+.+... +++|...+.
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd 34 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNE 34 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence 489999999999999998754 378887654
No 425
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=92.10 E-value=0.63 Score=50.60 Aligned_cols=45 Identities=24% Similarity=0.457 Sum_probs=35.8
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC--hhHHHHcCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP--ADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~--~~~a~~~g~ 272 (656)
.|++|.|.|.|.+|...++.++.+|.+|++.+.... .+.++++|+
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga 229 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGA 229 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCC
Confidence 588999999999999999999999999988765542 233445665
No 426
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=92.03 E-value=1.3 Score=44.76 Aligned_cols=88 Identities=26% Similarity=0.321 Sum_probs=55.3
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCee-c-----CHHHH-----hccCCEEEEccCCCc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVEL-V-----SFDQA-----LATADFISLHMPLNP 295 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~-~-----~l~el-----l~~aDvV~l~~Plt~ 295 (656)
.|+++.|.|.|.+|+.+++.++..|.+|++.++.. ..+.+...|... . +..+. -...|+++.+++...
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~ 213 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPE 213 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCHH
Confidence 57899999999999999999999999999998764 233344444321 1 11111 134667666655211
Q ss_pred cccccccHHHHhcCCCCcEEEEcCC
Q 006212 296 TTSKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 296 ~T~~li~~~~l~~mK~gailINvaR 320 (656)
.-...+..|+++..+++++.
T Consensus 214 -----~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 214 -----TLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred -----HHHHHHHhcccCCEEEEEcc
Confidence 12334455666666666654
No 427
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=92.02 E-value=0.45 Score=51.04 Aligned_cols=63 Identities=19% Similarity=0.282 Sum_probs=43.5
Q ss_pred CEEEEEec-ChhHHHHHHHHhcCCC--EEEEECCCCChhHH--H---------HcC--Cee--c-CHHHHhccCCEEEEc
Q 006212 230 KTLAVMGF-GKVGSEVARRAKGLGM--NVIAHDPYAPADKA--R---------AVG--VEL--V-SFDQALATADFISLH 290 (656)
Q Consensus 230 ktvGIIGl-G~IG~~vA~~lk~~G~--~Vi~~d~~~~~~~a--~---------~~g--~~~--~-~l~ell~~aDvV~l~ 290 (656)
++|+|+|. |.+|..+|..+...|. +|+.+|+....+.+ . ..+ ... . +. +.+++||+|+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence 47999998 9999999999987765 59999974311111 0 111 112 1 44 459999999999
Q ss_pred cCC
Q 006212 291 MPL 293 (656)
Q Consensus 291 ~Pl 293 (656)
...
T Consensus 80 ag~ 82 (309)
T cd05294 80 AGV 82 (309)
T ss_pred cCC
Confidence 863
No 428
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=92.02 E-value=0.47 Score=51.10 Aligned_cols=45 Identities=29% Similarity=0.454 Sum_probs=36.6
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|.+|.|.|.|.+|...++.++..|.+|++.+... ..+.+++.|+
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga 211 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGA 211 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC
Confidence 48899999999999999999999999999988764 3344555554
No 429
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=92.01 E-value=0.44 Score=51.11 Aligned_cols=75 Identities=17% Similarity=0.291 Sum_probs=52.3
Q ss_pred EEEEEe-cChhHHHHHHHHhcC-CCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhc
Q 006212 231 TLAVMG-FGKVGSEVARRAKGL-GMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAK 308 (656)
Q Consensus 231 tvGIIG-lG~IG~~vA~~lk~~-G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~ 308 (656)
+|+|+| -|-.|.++.++|... .+++........ ....+.+++++++|++++|+|.. ... +....
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~--------~~~~~~~~~~~~~D~vFlalp~~-~s~-----~~~~~ 68 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR--------KDAAERAKLLNAADVAILCLPDD-AAR-----EAVSL 68 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc--------cCcCCHhHhhcCCCEEEECCCHH-HHH-----HHHHH
Confidence 689997 489999999999977 567766532211 12235677888999999999943 222 22222
Q ss_pred -CCCCcEEEEcC
Q 006212 309 -MKKGVRIVNVA 319 (656)
Q Consensus 309 -mK~gailINva 319 (656)
.+.|+.+||.+
T Consensus 69 ~~~~g~~VIDlS 80 (310)
T TIGR01851 69 VDNPNTCIIDAS 80 (310)
T ss_pred HHhCCCEEEECC
Confidence 35789999987
No 430
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=91.93 E-value=0.35 Score=52.52 Aligned_cols=60 Identities=27% Similarity=0.394 Sum_probs=43.5
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCCC--hhHHHHcCC--eecC---HHHHhccCCEEEEc
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP--ADKARAVGV--ELVS---FDQALATADFISLH 290 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~--~~~a~~~g~--~~~~---l~ell~~aDvV~l~ 290 (656)
||||||-|..|+.+++.++.+|++|+++|++.. .....+.-+ .+.+ +.++++.||+|+..
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~e 67 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFE 67 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEeC
Confidence 599999999999999999999999999998752 111111111 1224 66788899998553
No 431
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=91.92 E-value=0.23 Score=51.34 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=32.0
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCC
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~ 261 (656)
..|.+++|.|+|+|-+|..+|+.|...|. ++..+|+.
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 35889999999999999999999998885 67777764
No 432
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=91.91 E-value=0.29 Score=47.21 Aligned_cols=63 Identities=29% Similarity=0.332 Sum_probs=46.9
Q ss_pred EEEEe-cChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeec--------CHHHHhccCCEEEEccCCCc
Q 006212 232 LAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV--------SFDQALATADFISLHMPLNP 295 (656)
Q Consensus 232 vGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~--------~l~ell~~aDvV~l~~Plt~ 295 (656)
|.|+| .|.+|+.+++.|...|.+|.+.-++...... ..+++.+ ++.+.++.+|.|+.+++...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~ 72 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPP 72 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTT
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-ccccccceeeehhhhhhhhhhhhcchhhhhhhhhc
Confidence 57888 5999999999999999999999877532111 3444322 35667889999999997543
No 433
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=91.81 E-value=3.6 Score=44.17 Aligned_cols=65 Identities=25% Similarity=0.242 Sum_probs=47.2
Q ss_pred ccCCCEEEEEecC-hhHHHHHHHHhcCCCEEEEECCCC--Chh--------HHHHcCCee---cCHHHHhccCCEEEEcc
Q 006212 226 SLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYA--PAD--------KARAVGVEL---VSFDQALATADFISLHM 291 (656)
Q Consensus 226 ~l~gktvGIIGlG-~IG~~vA~~lk~~G~~Vi~~d~~~--~~~--------~a~~~g~~~---~~l~ell~~aDvV~l~~ 291 (656)
.+.|++|+++|=+ ++..+++..+..+|++|....|.. +.. .++..|..+ .++ +.++.||+|..-.
T Consensus 144 ~l~g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~-~a~~~aDvvy~~~ 222 (302)
T PRK14805 144 DVSKVKLAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTSDI-EAIEGHDAIYTDT 222 (302)
T ss_pred CcCCcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEcCH-HHHCCCCEEEeec
Confidence 4789999999984 567888888889999999988753 211 123346543 355 5699999998833
No 434
>PRK10206 putative oxidoreductase; Provisional
Probab=91.77 E-value=0.36 Score=52.48 Aligned_cols=63 Identities=16% Similarity=0.216 Sum_probs=42.7
Q ss_pred EEEEEecChhHHH-HHHHHhc--CCCEEEE-ECCCCCh-hHHHHcC-Cee-cCHHHHhc--cCCEEEEccCC
Q 006212 231 TLAVMGFGKVGSE-VARRAKG--LGMNVIA-HDPYAPA-DKARAVG-VEL-VSFDQALA--TADFISLHMPL 293 (656)
Q Consensus 231 tvGIIGlG~IG~~-vA~~lk~--~G~~Vi~-~d~~~~~-~~a~~~g-~~~-~~l~ell~--~aDvV~l~~Pl 293 (656)
++||||+|.|++. .+..+.. -+++|.+ +|+.... +.+.+.+ +.. .++++++. +.|+|++|+|.
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~ 74 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHA 74 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCc
Confidence 6999999998864 3444432 3678865 7876422 2234444 333 48999996 67999999993
No 435
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=91.72 E-value=0.56 Score=50.49 Aligned_cols=88 Identities=19% Similarity=0.200 Sum_probs=54.9
Q ss_pred EEEEEec-ChhHHHHHHHHhcCC--CEEEEECCCCChhHHHH--cC---Ceec------CHHHHhccCCEEEEccCCCcc
Q 006212 231 TLAVMGF-GKVGSEVARRAKGLG--MNVIAHDPYAPADKARA--VG---VELV------SFDQALATADFISLHMPLNPT 296 (656)
Q Consensus 231 tvGIIGl-G~IG~~vA~~lk~~G--~~Vi~~d~~~~~~~a~~--~g---~~~~------~l~ell~~aDvV~l~~Plt~~ 296 (656)
+|+|||. |.+|..+|-.+...+ -++..+|.......+.+ .+ .... ++.+.+++||+|+++.-.. .
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~-~ 79 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVP-R 79 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCC-C
Confidence 5899999 999999999887544 48999997642111111 11 1111 2467899999999987632 1
Q ss_pred cccc-----c--cH-------HHHhcCCCCcEEEEcC
Q 006212 297 TSKI-----F--ND-------ETFAKMKKGVRIVNVA 319 (656)
Q Consensus 297 T~~l-----i--~~-------~~l~~mK~gailINva 319 (656)
..++ + |. +.+..-.|++++++++
T Consensus 80 ~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvs 116 (312)
T TIGR01772 80 KPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVIT 116 (312)
T ss_pred CCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEec
Confidence 1121 1 11 1222346788888886
No 436
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=91.71 E-value=0.12 Score=45.16 Aligned_cols=32 Identities=31% Similarity=0.427 Sum_probs=27.9
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEee
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVG 592 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~ 592 (656)
+-|.-.|+||+++.|++.|+++|+||-+++-.
T Consensus 6 ITV~GkDr~GIva~is~vLAe~~vNIldisQt 37 (90)
T COG3830 6 ITVIGKDRVGIVAAVSRVLAEHGVNILDISQT 37 (90)
T ss_pred EEEEcCCCCchhHHHHHHHHHcCCcEEEHHHH
Confidence 33457999999999999999999999988764
No 437
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.69 E-value=0.43 Score=53.10 Aligned_cols=102 Identities=15% Similarity=0.177 Sum_probs=60.0
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHh--ccCCEEEEccCCCcccc-------ccc
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQAL--ATADFISLHMPLNPTTS-------KIF 301 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell--~~aDvV~l~~Plt~~T~-------~li 301 (656)
++.|+|+|..|.++|+.|+ .|.+|.++|.........+.|+.+.. ++.+ .++|+|+.. |.-+... .++
T Consensus 2 ~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~~~~~gi~~~~-~~~~~~~~~d~vv~s-p~i~~~~~~~~~a~~i~ 78 (401)
T PRK03815 2 KISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESHKDEEGNLLLP-SNDFDPNKSDLEIPS-PGIPPSHPLIQKAKNLI 78 (401)
T ss_pred eEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccchhhcCCEEec-HHHcCcCCCCEEEEC-CCCCCCCHHHHHHHHHh
Confidence 5899999999999999999 99999999954322212334665533 2334 468987654 3222221 123
Q ss_pred cHHH-HhcCCCCcEEEEcCCCchhcHHHHHHhHhc
Q 006212 302 NDET-FAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 302 ~~~~-l~~mK~gailINvaRg~ivde~aL~~aL~~ 335 (656)
.+.. +..+.+..+-|--+.|+--..+-+...|+.
T Consensus 79 ~~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~ 113 (401)
T PRK03815 79 SEYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLED 113 (401)
T ss_pred hHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 3322 222222233333346777666666666664
No 438
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=91.58 E-value=0.29 Score=53.80 Aligned_cols=63 Identities=27% Similarity=0.344 Sum_probs=43.0
Q ss_pred EEEEecChhHHHHHHHHhcCC-C-EEEEECCCCCh-hHHHH--c--CCee--c------CHHHHhccCCEEEEccCCC
Q 006212 232 LAVMGFGKVGSEVARRAKGLG-M-NVIAHDPYAPA-DKARA--V--GVEL--V------SFDQALATADFISLHMPLN 294 (656)
Q Consensus 232 vGIIGlG~IG~~vA~~lk~~G-~-~Vi~~d~~~~~-~~a~~--~--g~~~--~------~l~ell~~aDvV~l~~Plt 294 (656)
|+|+|.|.+|+.+++.|...+ + +|++.|++... +...+ . .++. + +++++++++|+|+.|+|..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF 78 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence 689999999999999998764 5 89999988632 22211 1 2221 1 3678999999999999843
No 439
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.56 E-value=0.48 Score=53.58 Aligned_cols=106 Identities=23% Similarity=0.224 Sum_probs=61.6
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHc-CCeec--CHHHHhccCCEEEEccCCCcccc-----
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAV-GVELV--SFDQALATADFISLHMPLNPTTS----- 298 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~-g~~~~--~l~ell~~aDvV~l~~Plt~~T~----- 298 (656)
.||+|+|+|+|.-|.++|+.|+. |.+|+++|.... .....+. ..... ...+.+.++|+|+..- .-+.+.
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SP-gI~~~~p~~~~ 82 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSP-GIPLTHEIVKI 82 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECC-CCCCCCHHHHH
Confidence 48899999999999999999995 999999995432 1111111 11111 1234567899887643 332221
Q ss_pred ------ccccHHHH--hcCCCCcEEEEcC-CCchhcHHHHHHhHhc
Q 006212 299 ------KIFNDETF--AKMKKGVRIVNVA-RGGVIDEEALVRALDS 335 (656)
Q Consensus 299 ------~li~~~~l--~~mK~gailINva-Rg~ivde~aL~~aL~~ 335 (656)
.++++-++ ..+++..+|-=+| .|+--...-+...|+.
T Consensus 83 a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~ 128 (454)
T PRK01368 83 AKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNS 128 (454)
T ss_pred HHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 23444333 2233323333334 5777666666666664
No 440
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.55 E-value=0.74 Score=38.87 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=35.6
Q ss_pred EEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEe
Q 006212 562 LCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGV 606 (656)
Q Consensus 562 lv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~ 606 (656)
=+..+|+||..+.++..|.++|+||...++... .++.++-.+-+
T Consensus 4 ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt-~~~~v~D~F~V 47 (76)
T cd04927 4 KLFCSDRKGLLHDVTEVLYELELTIERVKVSTT-PDGRVLDLFFI 47 (76)
T ss_pred EEEECCCCCHHHHHHHHHHHCCCeEEEEEEEEC-CCCEEEEEEEE
Confidence 356789999999999999999999999999754 35666555544
No 441
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=91.49 E-value=0.89 Score=50.69 Aligned_cols=104 Identities=22% Similarity=0.302 Sum_probs=63.4
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCCC--hh----HHH-HcCCeec---CHHHHhccCCEEEEccCCCcccc--
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP--AD----KAR-AVGVELV---SFDQALATADFISLHMPLNPTTS-- 298 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~--~~----~a~-~~g~~~~---~l~ell~~aDvV~l~~Plt~~T~-- 298 (656)
++.|||+|.+|.++|+.|+..|++|.++|.... .. ... ..|+.+. + .+.+.++|+|+..--..+...
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~ 79 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV 79 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence 378999999999999999999999999996542 11 111 2477543 3 455688998876442222211
Q ss_pred --------ccccHH-HHhc-CCCCcEEEEcCCCchhcHHHHHHhHhc
Q 006212 299 --------KIFNDE-TFAK-MKKGVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 299 --------~li~~~-~l~~-mK~gailINvaRg~ivde~aL~~aL~~ 335 (656)
.++.+. .+.. ++.-.+-|--+.|+--...-+...|+.
T Consensus 80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~ 126 (433)
T TIGR01087 80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKA 126 (433)
T ss_pred HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 123332 2222 333334444446887666666666664
No 442
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=91.47 E-value=0.39 Score=46.87 Aligned_cols=35 Identities=14% Similarity=0.360 Sum_probs=30.8
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeec
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTF 595 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~ 595 (656)
+.+...|+||++.+++.+|.++||||.+|..-+..
T Consensus 95 v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~ 129 (176)
T COG2716 95 VYVDANDRPGIVEEFTALFDGHGINIENLVSRTYP 129 (176)
T ss_pred EEEEecCCccHHHHHHHHHHhcCCchhhceeeeee
Confidence 34678899999999999999999999999996643
No 443
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=91.42 E-value=0.58 Score=49.89 Aligned_cols=45 Identities=36% Similarity=0.477 Sum_probs=36.6
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCE-EEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMN-VIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~-Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|.+|.|+|.|.+|...++.++.+|.+ |++.++.. ..+.++++|+
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga 209 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGA 209 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC
Confidence 389999999999999999999999998 99988764 3344555554
No 444
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=91.36 E-value=0.76 Score=48.82 Aligned_cols=90 Identities=20% Similarity=0.221 Sum_probs=62.7
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecC-HHHHhccCCEEEEccCCCccccc--------
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVS-FDQALATADFISLHMPLNPTTSK-------- 299 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~-l~ell~~aDvV~l~~Plt~~T~~-------- 299 (656)
|++++|||-=.--..+++.|...|++|..|.-....... .|+...+ .++.++++|+|++-+|.+.+.-.
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~ 78 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDGF--TGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNE 78 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEecccccccc--ccceeecchhhhhccCCEEEECCccccCCceEecccccC
Confidence 689999999999999999999999998776532110101 1555544 44558999999999997665321
Q ss_pred --cccHHHHhcCCCCcEEEEcCCC
Q 006212 300 --IFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 300 --li~~~~l~~mK~gailINvaRg 321 (656)
.++++.++.|+++++ +-+|.+
T Consensus 79 ~~~l~~~~l~~~~~~~~-~~~G~~ 101 (287)
T TIGR02853 79 KVVLTPELLESTKGHCT-IYVGIS 101 (287)
T ss_pred CccccHHHHHhcCCCCE-EEEecC
Confidence 246778888887654 444433
No 445
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=91.32 E-value=0.35 Score=49.03 Aligned_cols=37 Identities=24% Similarity=0.271 Sum_probs=32.4
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCC
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~ 261 (656)
..|..++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 35889999999999999999999998887 48888765
No 446
>PTZ00325 malate dehydrogenase; Provisional
Probab=91.27 E-value=0.49 Score=51.10 Aligned_cols=67 Identities=19% Similarity=0.222 Sum_probs=45.9
Q ss_pred ccCCCEEEEEec-ChhHHHHHHHHhc--CCCEEEEECCCCChhHHHHc-----CCeec---C---HHHHhccCCEEEEcc
Q 006212 226 SLVGKTLAVMGF-GKVGSEVARRAKG--LGMNVIAHDPYAPADKARAV-----GVELV---S---FDQALATADFISLHM 291 (656)
Q Consensus 226 ~l~gktvGIIGl-G~IG~~vA~~lk~--~G~~Vi~~d~~~~~~~a~~~-----g~~~~---~---l~ell~~aDvV~l~~ 291 (656)
-++.++|+|||. |.||..+|..+.. ...++..+|.......+.++ ..... + ..+.++.||+|++++
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita 84 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICA 84 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence 356779999999 9999999999884 44689999974322211110 11111 1 257899999999877
Q ss_pred C
Q 006212 292 P 292 (656)
Q Consensus 292 P 292 (656)
-
T Consensus 85 G 85 (321)
T PTZ00325 85 G 85 (321)
T ss_pred C
Confidence 5
No 447
>PRK05086 malate dehydrogenase; Provisional
Probab=91.13 E-value=1.2 Score=48.02 Aligned_cols=64 Identities=22% Similarity=0.194 Sum_probs=43.6
Q ss_pred CEEEEEec-ChhHHHHHHHHh---cCCCEEEEECCCCChh-H---HHHcC--C--e---ecCHHHHhccCCEEEEccCC
Q 006212 230 KTLAVMGF-GKVGSEVARRAK---GLGMNVIAHDPYAPAD-K---ARAVG--V--E---LVSFDQALATADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIGl-G~IG~~vA~~lk---~~G~~Vi~~d~~~~~~-~---a~~~g--~--~---~~~l~ell~~aDvV~l~~Pl 293 (656)
++|+|||. |.||+.+|..++ ..+..+..+|+....+ . ..+.+ . . ..++.+.++++|+|++|+-.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCC
Confidence 58999999 999999998874 3456888898654210 0 11111 1 1 12566788999999998764
No 448
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=91.11 E-value=0.3 Score=53.43 Aligned_cols=37 Identities=30% Similarity=0.392 Sum_probs=32.1
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCC
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~ 261 (656)
..|.+++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 45899999999999999999999998886 67777754
No 449
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=91.10 E-value=0.46 Score=51.11 Aligned_cols=76 Identities=18% Similarity=0.296 Sum_probs=51.6
Q ss_pred CEEEEEe-cChhHHHHHHHHhcCC-CEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHh
Q 006212 230 KTLAVMG-FGKVGSEVARRAKGLG-MNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFA 307 (656)
Q Consensus 230 ktvGIIG-lG~IG~~vA~~lk~~G-~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~ 307 (656)
.+|+||| .|..|+.+.+.|.... +++.......... ..+.++.++++|++|+|+|... ..+...
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~--------~~~~~~~~~~~DvvFlalp~~~------s~~~~~ 68 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKD--------AAARRELLNAADVAILCLPDDA------AREAVA 68 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCc--------ccCchhhhcCCCEEEECCCHHH------HHHHHH
Confidence 4799999 7999999999999774 5666553322111 1234556788999999999432 222222
Q ss_pred c-CCCCcEEEEcC
Q 006212 308 K-MKKGVRIVNVA 319 (656)
Q Consensus 308 ~-mK~gailINva 319 (656)
. .+.|+.+||.+
T Consensus 69 ~~~~~g~~VIDlS 81 (313)
T PRK11863 69 LIDNPATRVIDAS 81 (313)
T ss_pred HHHhCCCEEEECC
Confidence 2 26789999987
No 450
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=91.09 E-value=4.9 Score=42.95 Aligned_cols=93 Identities=26% Similarity=0.348 Sum_probs=65.4
Q ss_pred cCCCEEEEEecC-hhHHHHHHHHhcCCCEEEEECCCC--C-h---hH----HHHcC--Ceec-CHHHHhccCCEEEEccC
Q 006212 227 LVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYA--P-A---DK----ARAVG--VELV-SFDQALATADFISLHMP 292 (656)
Q Consensus 227 l~gktvGIIGlG-~IG~~vA~~lk~~G~~Vi~~d~~~--~-~---~~----a~~~g--~~~~-~l~ell~~aDvV~l~~P 292 (656)
+.|+|+..+|=| +++.++...+..+||+|...-|.. + . +. +++.| +.++ ++++.++.||+|..-+.
T Consensus 151 l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eAv~gADvvyTDvW 230 (310)
T COG0078 151 LKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVW 230 (310)
T ss_pred ccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHHhCCCCEEEecCc
Confidence 999999999877 588888888889999998876642 1 1 12 23335 3444 89999999999998765
Q ss_pred CC--cccc-----------ccccHHHHhcCCCCcEEEEcC
Q 006212 293 LN--PTTS-----------KIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 293 lt--~~T~-----------~li~~~~l~~mK~gailINva 319 (656)
.. ++.+ .-+|.+.++.-++++++.-|-
T Consensus 231 vSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHCL 270 (310)
T COG0078 231 VSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHCL 270 (310)
T ss_pred ccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeCC
Confidence 43 1221 345666666667777777773
No 451
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=91.01 E-value=0.31 Score=44.23 Aligned_cols=95 Identities=19% Similarity=0.269 Sum_probs=57.3
Q ss_pred ecChhHHHHHHHHhcC----CCEEEE-ECCC--CChhH-H-HHcCCeecCHHHHhc--cCCEEEEccCCCccccccccHH
Q 006212 236 GFGKVGSEVARRAKGL----GMNVIA-HDPY--APADK-A-RAVGVELVSFDQALA--TADFISLHMPLNPTTSKIFNDE 304 (656)
Q Consensus 236 GlG~IG~~vA~~lk~~----G~~Vi~-~d~~--~~~~~-a-~~~g~~~~~l~ell~--~aDvV~l~~Plt~~T~~li~~~ 304 (656)
|+|.||+.+++.++.. +++|.+ +|+. ..... . ........++++++. ..|+|+=|.+..+ +.+-
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~-----~~~~ 75 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEA-----VAEY 75 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHH-----HHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchH-----HHHH
Confidence 8999999999999854 677766 4665 11111 1 122234558999998 9999999966322 1222
Q ss_pred HHhcCCCCcEEEEcCCCchhc---HHHHHHhHhc
Q 006212 305 TFAKMKKGVRIVNVARGGVID---EEALVRALDS 335 (656)
Q Consensus 305 ~l~~mK~gailINvaRg~ivd---e~aL~~aL~~ 335 (656)
....|+.|.-+|-+..+.+.| .+.|.++.++
T Consensus 76 ~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~ 109 (117)
T PF03447_consen 76 YEKALERGKHVVTANKGALADEALYEELREAARK 109 (117)
T ss_dssp HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHH
Confidence 344467888888888888772 4455544443
No 452
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=91.00 E-value=0.75 Score=50.06 Aligned_cols=45 Identities=33% Similarity=0.451 Sum_probs=37.3
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|++|.|.|.|.+|...++.++..|. +|++.|... ..+.++++|+
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga 237 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGA 237 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCC
Confidence 47899999999999999999999999 699988765 3455666665
No 453
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.99 E-value=0.81 Score=38.90 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=43.3
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCC---CC-CHHHHHHHhc
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE---EP-NQDSLKEIGK 620 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~---~~-~~e~l~~L~~ 620 (656)
+=+...|+||.+..|+..|.+.|++|...++.-...|+.+.=++-+|. ++ +++.+++|++
T Consensus 3 lev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~ 66 (75)
T cd04896 3 LQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCA 66 (75)
T ss_pred EEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHH
Confidence 346789999999999999999999999999974445666655544432 33 4455566543
No 454
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=90.98 E-value=0.85 Score=50.03 Aligned_cols=45 Identities=24% Similarity=0.429 Sum_probs=36.3
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC--hhHHHHcCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP--ADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~--~~~a~~~g~ 272 (656)
.|++|.|.|.|.+|...++.++.+|.+|++.+.... .+.++++|+
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa 224 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGA 224 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCC
Confidence 589999999999999999999999999999876532 234445554
No 455
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=90.95 E-value=0.65 Score=51.48 Aligned_cols=63 Identities=17% Similarity=0.166 Sum_probs=51.0
Q ss_pred cCCCEEEEEecCh----------hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeec-CHHHHhccCCEEEEcc
Q 006212 227 LVGKTLAVMGFGK----------VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHM 291 (656)
Q Consensus 227 l~gktvGIIGlG~----------IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~ 291 (656)
..|++|+|+|+.- -...+++.|...|.+|.+|||...... ..++.+. ++++.++.||.|++..
T Consensus 294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 367 (388)
T PRK15057 294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDS--FFNSRLERDLATFKQQADVIISNR 367 (388)
T ss_pred hcCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchh--hcCCeeeCCHHHHHHhCCEEEEcC
Confidence 3789999999943 566899999999999999999863322 4467665 8999999999999854
No 456
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=90.90 E-value=0.26 Score=49.25 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=33.9
Q ss_pred EEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEE
Q 006212 562 LCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIG 605 (656)
Q Consensus 562 lv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~ 605 (656)
-+.-+|+||+++.|+..|+++|+||.+.+..+-...-..+|.++
T Consensus 12 TviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs 55 (190)
T PRK11589 12 TALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS 55 (190)
T ss_pred EEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe
Confidence 34579999999999999999999999999876542223344453
No 457
>CHL00194 ycf39 Ycf39; Provisional
Probab=90.62 E-value=0.65 Score=49.42 Aligned_cols=63 Identities=22% Similarity=0.254 Sum_probs=45.5
Q ss_pred CEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCCCh-hHHHHcCCeec--------CHHHHhccCCEEEEccC
Q 006212 230 KTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVELV--------SFDQALATADFISLHMP 292 (656)
Q Consensus 230 ktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~a~~~g~~~~--------~l~ell~~aDvV~l~~P 292 (656)
++|.|.| .|.||+.+++.|...|++|.+.++.... ......+++++ ++.++++.+|+|+.+.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 3788998 6999999999999999999998876422 11223455432 35667899999876543
No 458
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.58 E-value=0.48 Score=38.88 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=41.6
Q ss_pred EEEecCCCCchhhHHhhhhcCCccccceEeeeecc-CccEEEEEEeCCCC-CHHHHHHHhc
Q 006212 562 LCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFR-RNHGIMAIGVDEEP-NQDSLKEIGK 620 (656)
Q Consensus 562 lv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~-gg~al~~i~~D~~~-~~e~l~~L~~ 620 (656)
-+.-+|+||.+.++.++|++ +.||..++-.|... ...-.+.+++.++- -++++++|++
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDREDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHHHHHHHH
Confidence 35678999999999999999 99999998866432 22334456666542 2366777665
No 459
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=90.58 E-value=0.91 Score=49.47 Aligned_cols=85 Identities=26% Similarity=0.322 Sum_probs=55.7
Q ss_pred CEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC-ChhHHHH-cCCeec-CH-H--------HHh--ccCCEEEEccCCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARA-VGVELV-SF-D--------QAL--ATADFISLHMPLN 294 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~-~~~~a~~-~g~~~~-~l-~--------ell--~~aDvV~l~~Plt 294 (656)
.++.|+|.|.||.-.+..++.+|. +|++.|+.. ..+.|++ .|...+ +. + ++. ..+|+++-|+. .
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-~ 248 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-S 248 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-C
Confidence 399999999999999999999985 788888876 4566666 454322 11 1 222 23788887776 2
Q ss_pred ccccccccHHHHhcCCCCcEEEEcC
Q 006212 295 PTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 295 ~~T~~li~~~~l~~mK~gailINva 319 (656)
+. .-...+..++++..++.++
T Consensus 249 ~~----~~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 249 PP----ALDQALEALRPGGTVVVVG 269 (350)
T ss_pred HH----HHHHHHHHhcCCCEEEEEe
Confidence 21 1134455566776666665
No 460
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=90.51 E-value=0.47 Score=47.91 Aligned_cols=63 Identities=29% Similarity=0.336 Sum_probs=48.3
Q ss_pred EEEEec-ChhHHHHHHHHhcCCCEEEEECCCCCh---hHHHHcCCeec--------CHHHHhccCCEEEEccCCC
Q 006212 232 LAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAPA---DKARAVGVELV--------SFDQALATADFISLHMPLN 294 (656)
Q Consensus 232 vGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~~~---~~a~~~g~~~~--------~l~ell~~aDvV~l~~Plt 294 (656)
|.|+|. |.+|+.+++.|...+++|.+.-+..+. ......|++.+ +|.+.++.+|.|++++|..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence 578885 999999999999888988887665432 33455677532 3667899999999999854
No 461
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=90.50 E-value=1.2 Score=47.66 Aligned_cols=45 Identities=31% Similarity=0.474 Sum_probs=36.6
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|.++.|.|.|.+|..+++.++++|++|++.++.. ..+.+.+.|+
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~ 214 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGA 214 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCC
Confidence 47899999999999999999999999999988764 3344555554
No 462
>PRK07877 hypothetical protein; Provisional
Probab=90.49 E-value=0.36 Score=57.52 Aligned_cols=96 Identities=16% Similarity=0.187 Sum_probs=62.7
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCC--EEEEECCCC------Chh-------------HH----HHc--CCe--e--
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYA------PAD-------------KA----RAV--GVE--L-- 274 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~--~Vi~~d~~~------~~~-------------~a----~~~--g~~--~-- 274 (656)
.|.+++|+|+|+| +|+.+|..|...|. ++..+|... ... .+ .+. .++ .
T Consensus 104 ~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~ 182 (722)
T PRK07877 104 RLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT 182 (722)
T ss_pred HHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe
Confidence 5899999999999 89999999997774 777766421 000 01 011 111 1
Q ss_pred -----cCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhc
Q 006212 275 -----VSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVID 325 (656)
Q Consensus 275 -----~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivd 325 (656)
.++++++..+|+|+-|+- +-+++.++++.....=+ .+|.-.+-++.++
T Consensus 183 ~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~~i--P~i~~~~~~g~~~ 235 (722)
T PRK07877 183 DGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARARRI--PVLMATSDRGLLD 235 (722)
T ss_pred ccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHcCC--CEEEEcCCCCCcC
Confidence 147788999999988887 56788888877665322 3555554444444
No 463
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=90.45 E-value=0.24 Score=54.50 Aligned_cols=52 Identities=13% Similarity=0.157 Sum_probs=38.7
Q ss_pred HHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCC
Q 006212 208 ADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (656)
Q Consensus 208 ~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~ 261 (656)
+.++++-..|... .-..|.+++|.|||+|.+|..+|+.|...|. ++..+|+.
T Consensus 22 y~Rqi~l~~~g~~--~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 22 TARQLALPGFGIE--QQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred hhcccchhhhCHH--HHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3444443345432 1246899999999999999999999999886 78888764
No 464
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.44 E-value=1.2 Score=52.70 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=32.9
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
..||+|.|||-|..|...|..|+..|++|.+|++..
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 469999999999999999999999999999998653
No 465
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.43 E-value=0.83 Score=53.98 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=32.6
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCC
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~ 261 (656)
-.|++|.|||.|..|.+.|..|+..|++|++||+.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~ 359 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRH 359 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 46999999999999999999999999999999864
No 466
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.43 E-value=1.1 Score=48.24 Aligned_cols=90 Identities=21% Similarity=0.229 Sum_probs=55.7
Q ss_pred CEEEEEec-ChhHHHHHHHHhcCC--CEEEEECCCCChhHHHH--cC---Ceec------CHHHHhccCCEEEEccCCC-
Q 006212 230 KTLAVMGF-GKVGSEVARRAKGLG--MNVIAHDPYAPADKARA--VG---VELV------SFDQALATADFISLHMPLN- 294 (656)
Q Consensus 230 ktvGIIGl-G~IG~~vA~~lk~~G--~~Vi~~d~~~~~~~a~~--~g---~~~~------~l~ell~~aDvV~l~~Plt- 294 (656)
.+|+|||. |.+|.++|-.+...| -++..+|.......+.+ .+ .... ++.+.+++||+|+++.-..
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~ 80 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR 80 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence 37999999 999999999998666 47888997621111111 11 1111 2357899999999887532
Q ss_pred -c-cccc-cc--cHH-------HHhcCCCCcEEEEcC
Q 006212 295 -P-TTSK-IF--NDE-------TFAKMKKGVRIVNVA 319 (656)
Q Consensus 295 -~-~T~~-li--~~~-------~l~~mK~gailINva 319 (656)
+ ++|. ++ |.+ .+..-.|.+++++++
T Consensus 81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvt 117 (310)
T cd01337 81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIIS 117 (310)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 1 2221 11 111 222346788888886
No 467
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.41 E-value=1.1 Score=37.86 Aligned_cols=59 Identities=12% Similarity=0.157 Sum_probs=42.6
Q ss_pred EEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEe---CC-CC-CHHHHHHHhc
Q 006212 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGV---DE-EP-NQDSLKEIGK 620 (656)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~---D~-~~-~~e~l~~L~~ 620 (656)
.+=+...|+||.+..|+..|.++|++|..-.+.- .|+.+.=++-+ +. ++ +++.+++|++
T Consensus 3 viev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT--~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~ 66 (72)
T cd04895 3 LVKVDSARKPGILLEAVQVLTDLDLCITKAYISS--DGGWFMDVFHVTDQLGNKLTDDSLIAYIEK 66 (72)
T ss_pred EEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEee--cCCeEEEEEEEECCCCCCCCCHHHHHHHHH
Confidence 3446789999999999999999999999999863 34555444333 32 23 4577777764
No 468
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=90.34 E-value=0.68 Score=48.87 Aligned_cols=63 Identities=19% Similarity=0.176 Sum_probs=44.1
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCCh--hHHHHcCCeecCHHHH-hccCCEEEEccCC
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPA--DKARAVGVELVSFDQA-LATADFISLHMPL 293 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~--~~a~~~g~~~~~l~el-l~~aDvV~l~~Pl 293 (656)
++++.|+|.|-.+++++..|+..|. +|.+++|.... ..+...+.... +++ ...+|+|+.|+|.
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~--~~~~~~~~dlvINaTp~ 188 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWR--PDLGGIEADILVNVTPI 188 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcch--hhcccccCCEEEECCcc
Confidence 4689999999999999999999897 59999987522 22222332211 111 2457888888884
No 469
>PRK08223 hypothetical protein; Validated
Probab=90.31 E-value=0.46 Score=50.50 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=31.3
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCC
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~ 261 (656)
.|++++|.|||+|-+|..+|+.|...|. ++..+|..
T Consensus 24 kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 24 RLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred HHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 5899999999999999999999998886 66667654
No 470
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=90.31 E-value=2.1 Score=45.72 Aligned_cols=63 Identities=21% Similarity=0.331 Sum_probs=48.7
Q ss_pred cCCCEEEEEe---cChhHHHHHHHHhcCCCEEEEECCCC--Ch----hHHHHcCC--eecC-HHHHhccCCEEEE
Q 006212 227 LVGKTLAVMG---FGKVGSEVARRAKGLGMNVIAHDPYA--PA----DKARAVGV--ELVS-FDQALATADFISL 289 (656)
Q Consensus 227 l~gktvGIIG---lG~IG~~vA~~lk~~G~~Vi~~d~~~--~~----~~a~~~g~--~~~~-l~ell~~aDvV~l 289 (656)
+.|++|+|+| +|+.-++.++.|+.||.+|..+.|.. ++ +.....|. ...+ .++.++++|++.+
T Consensus 156 ~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~ 230 (316)
T COG0540 156 LDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYM 230 (316)
T ss_pred cCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhcCceEEEecchhhhhccCCEEEe
Confidence 8899999999 89999999999999999999999864 21 22333332 2344 4559999999955
No 471
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=90.14 E-value=0.66 Score=55.18 Aligned_cols=70 Identities=9% Similarity=0.117 Sum_probs=53.8
Q ss_pred EEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEE--EEeCCCCCH-HHHHHHhcCCCccEEEEE
Q 006212 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMA--IGVDEEPNQ-DSLKEIGKVPAIEEYTLL 630 (656)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~--i~~D~~~~~-e~l~~L~~~~~V~~v~~v 630 (656)
.|.+...|++|+++.|++++++.++||.++++.. .+++.+.+. |++.+...- .++.+|+++++|.+|+-+
T Consensus 628 ~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~-~~~~~~~~~~~ieV~~~~~L~~i~~~Lr~i~~V~~V~R~ 700 (702)
T PRK11092 628 EIKVEMFNHQGALANLTAAINTTGSNIQSLNTEE-KDGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVTRN 700 (702)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEE-cCCCEEEEEEEEEECCHHHHHHHHHHHhCCCCcceEEEc
Confidence 3456789999999999999999999999999743 334555544 555554333 899999999999998643
No 472
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=90.13 E-value=0.68 Score=56.10 Aligned_cols=106 Identities=13% Similarity=0.214 Sum_probs=65.8
Q ss_pred CEEEEEecChhHHHH-HHHHhcCCCEEEEECCCCCh--hHHHHcCCeec--CHHHHhccCCEEEEccCCCcccc------
Q 006212 230 KTLAVMGFGKVGSEV-ARRAKGLGMNVIAHDPYAPA--DKARAVGVELV--SFDQALATADFISLHMPLNPTTS------ 298 (656)
Q Consensus 230 ktvGIIGlG~IG~~v-A~~lk~~G~~Vi~~d~~~~~--~~a~~~g~~~~--~l~ell~~aDvV~l~~Plt~~T~------ 298 (656)
+++.|+|+|.+|.+. |+.|+..|++|.++|..... ....+.|+.+. ...+.+..+|+|+..--..+.+.
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a~ 84 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSAK 84 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHHH
Confidence 369999999999998 99999999999999975422 23345577653 23356778999977533222221
Q ss_pred ----ccccHHHH-hc-CCC-CcEEEEcCCCchhcHHHHHHhHhc
Q 006212 299 ----KIFNDETF-AK-MKK-GVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 299 ----~li~~~~l-~~-mK~-gailINvaRg~ivde~aL~~aL~~ 335 (656)
.++++.++ .. ++. ..+-|--+.|+--...-+...|+.
T Consensus 85 ~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~ 128 (809)
T PRK14573 85 SRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQE 128 (809)
T ss_pred HCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 22333333 22 332 233333345877656656666665
No 473
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.12 E-value=0.9 Score=51.04 Aligned_cols=104 Identities=17% Similarity=0.259 Sum_probs=63.2
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh------hHHHHcCCeec---CHH-----HHhccCCEEEEccCCCcc
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA------DKARAVGVELV---SFD-----QALATADFISLHMPLNPT 296 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~------~~a~~~g~~~~---~l~-----ell~~aDvV~l~~Plt~~ 296 (656)
+|.|||+|..|.+.|+.|...|.+|.++|..... ....+.|+.+. ..+ +.+.+.|.|+.... -+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~g-i~~ 80 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPG-IPW 80 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCC-CCC
Confidence 5899999999999999999999999999975421 12345576542 222 46788999877443 332
Q ss_pred ccc-----------cccHHHH--hcCCCCcEEEEc-CCCchhcHHHHHHhHhc
Q 006212 297 TSK-----------IFNDETF--AKMKKGVRIVNV-ARGGVIDEEALVRALDS 335 (656)
Q Consensus 297 T~~-----------li~~~~l--~~mK~gailINv-aRg~ivde~aL~~aL~~ 335 (656)
... ++.+..+ ..+++..+|-=+ +.|+--...-+...|+.
T Consensus 81 ~~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~ 133 (459)
T PRK02705 81 DHPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQA 133 (459)
T ss_pred CCHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 222 1222222 223333333333 35776656655556654
No 474
>PLN02740 Alcohol dehydrogenase-like
Probab=90.11 E-value=1.1 Score=49.04 Aligned_cols=45 Identities=31% Similarity=0.588 Sum_probs=37.3
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|++|.|+|.|.+|...++.++.+|. +|++.|+.. ..+.++++|+
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga 244 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGI 244 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCC
Confidence 58999999999999999999999998 699988765 3455566664
No 475
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.96 E-value=0.74 Score=45.20 Aligned_cols=31 Identities=26% Similarity=0.317 Sum_probs=27.1
Q ss_pred EEEEEecChhHHHHHHHHhcCCC-EEEEECCC
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~ 261 (656)
+|+|||+|.+|..+|+.|...|. ++..+|..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 58999999999999999998887 58888764
No 476
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=89.94 E-value=0.46 Score=52.96 Aligned_cols=35 Identities=34% Similarity=0.660 Sum_probs=29.4
Q ss_pred CEEEEEecChhHHHHHHHHhc-CCCEEEE-ECCCCCh
Q 006212 230 KTLAVMGFGKVGSEVARRAKG-LGMNVIA-HDPYAPA 264 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~-~G~~Vi~-~d~~~~~ 264 (656)
.+|||.|||+||+.+++.+.. ++++|++ .||....
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~ 122 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDA 122 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCH
Confidence 489999999999999999874 7999988 6666433
No 477
>PRK06382 threonine dehydratase; Provisional
Probab=89.88 E-value=0.43 Score=53.13 Aligned_cols=68 Identities=15% Similarity=0.182 Sum_probs=49.5
Q ss_pred eecCccEEEEEecCCCCchhhHHhhhhcCCccccceEeeee---ccCccEEEEEEeCCC--CCH-HHHHHHhcC
Q 006212 554 ASLEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRT---FRRNHGIMAIGVDEE--PNQ-DSLKEIGKV 621 (656)
Q Consensus 554 ~~g~~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~---~~gg~al~~i~~D~~--~~~-e~l~~L~~~ 621 (656)
..+....+.+..+|+||.+++++.+++++++||..+...|. ...+.....+.++.. ... ++++.|++.
T Consensus 326 ~~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~~~~~~v~~~L~~~ 399 (406)
T PRK06382 326 NLGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQDHLDRILNALREM 399 (406)
T ss_pred hcCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 44455667778999999999999999999999988877642 233455556666553 333 778888764
No 478
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=89.74 E-value=1.1 Score=48.34 Aligned_cols=45 Identities=33% Similarity=0.425 Sum_probs=36.5
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCE-EEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMN-VIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~-Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|++|.|.|.|.+|...++.++.+|.+ |++.|+.. ..+.+++.|+
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga 222 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGA 222 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC
Confidence 488999999999999999999999985 99888765 3445555554
No 479
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=89.70 E-value=1.3 Score=47.69 Aligned_cols=44 Identities=16% Similarity=0.091 Sum_probs=33.1
Q ss_pred CCCEEEEEecChhHHHHHHHHhc-C-CCEEEEECCCC-ChhHHHHcC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKG-L-GMNVIAHDPYA-PADKARAVG 271 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~-~-G~~Vi~~d~~~-~~~~a~~~g 271 (656)
.|.+|.|+|.|.||...++.++. + +.+|++.|+.. ..+.++..+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~ 209 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFAD 209 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcC
Confidence 48899999999999998888875 5 47899998765 333444333
No 480
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.69 E-value=0.59 Score=50.53 Aligned_cols=63 Identities=13% Similarity=0.072 Sum_probs=43.2
Q ss_pred EEEEEec-ChhHHHHHHHHhcCC-------CEEEEECCCCChhHHH--Hc-----------CCe-ecCHHHHhccCCEEE
Q 006212 231 TLAVMGF-GKVGSEVARRAKGLG-------MNVIAHDPYAPADKAR--AV-----------GVE-LVSFDQALATADFIS 288 (656)
Q Consensus 231 tvGIIGl-G~IG~~vA~~lk~~G-------~~Vi~~d~~~~~~~a~--~~-----------g~~-~~~l~ell~~aDvV~ 288 (656)
+|+|+|. |.+|+.+|..|...+ .+|..+|.....+.+. .. .+. ..++.+.+++||+|+
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI 83 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVAI 83 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEEE
Confidence 6999999 999999999987643 4899998743211111 11 011 125668899999998
Q ss_pred EccCC
Q 006212 289 LHMPL 293 (656)
Q Consensus 289 l~~Pl 293 (656)
.+.-.
T Consensus 84 ~tAG~ 88 (325)
T cd01336 84 LVGAM 88 (325)
T ss_pred EeCCc
Confidence 87653
No 481
>PLN00106 malate dehydrogenase
Probab=89.66 E-value=0.72 Score=49.89 Aligned_cols=64 Identities=23% Similarity=0.201 Sum_probs=44.6
Q ss_pred CCEEEEEec-ChhHHHHHHHHhcCC--CEEEEECCCCChhHHHHc-------CCee----cCHHHHhccCCEEEEccC
Q 006212 229 GKTLAVMGF-GKVGSEVARRAKGLG--MNVIAHDPYAPADKARAV-------GVEL----VSFDQALATADFISLHMP 292 (656)
Q Consensus 229 gktvGIIGl-G~IG~~vA~~lk~~G--~~Vi~~d~~~~~~~a~~~-------g~~~----~~l~ell~~aDvV~l~~P 292 (656)
.++|+|+|. |.+|..+|..|...+ -++..+|.......+.++ .+.- .++.+.+++||+|+++.-
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG 95 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence 469999999 999999999998444 489999976521111111 1111 134688999999998765
No 482
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.61 E-value=1 Score=50.49 Aligned_cols=108 Identities=19% Similarity=0.179 Sum_probs=62.4
Q ss_pred cCC-CEEEEEecChhHHHHHHHHhcC--CCEEEEECCCCChh--HHHHcCCeec-C--HHHHhccCCEEEEccCCCcccc
Q 006212 227 LVG-KTLAVMGFGKVGSEVARRAKGL--GMNVIAHDPYAPAD--KARAVGVELV-S--FDQALATADFISLHMPLNPTTS 298 (656)
Q Consensus 227 l~g-ktvGIIGlG~IG~~vA~~lk~~--G~~Vi~~d~~~~~~--~a~~~g~~~~-~--l~ell~~aDvV~l~~Plt~~T~ 298 (656)
+.| |++.|||+|..|.+.++.|... |++|.++|...... ...+.|+.+. . -.+.+.++|+|+..- .-+.+.
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~g~~~~~g~~~~~~~~~~d~vV~Sp-gI~~~~ 82 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPEDVELHSGGWNLEWLLEADLVVTNP-GIALAT 82 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhcCCEEEeCCCChHHhccCCEEEECC-CCCCCC
Confidence 345 7899999999999999999866 58999999654211 1122377552 1 223457899876644 332221
Q ss_pred c-----------cccHHHH-h-cCCCCcEEEEcCCCchhcHHHHHHhHhc
Q 006212 299 K-----------IFNDETF-A-KMKKGVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 299 ~-----------li~~~~l-~-~mK~gailINvaRg~ivde~aL~~aL~~ 335 (656)
. ++.+..+ . .++...+-|--+-|+--...-+...|+.
T Consensus 83 p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 132 (438)
T PRK04663 83 PEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKA 132 (438)
T ss_pred HHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 1 2333222 2 2333333333335777655555666654
No 483
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.59 E-value=0.69 Score=49.64 Aligned_cols=62 Identities=27% Similarity=0.334 Sum_probs=42.5
Q ss_pred EEEEEecChhHHHHHHHHhcCCC--EEEEECCCCChh--HHHHcC----------Cee-cCHHHHhccCCEEEEccC
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPAD--KARAVG----------VEL-VSFDQALATADFISLHMP 292 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~--~Vi~~d~~~~~~--~a~~~g----------~~~-~~l~ell~~aDvV~l~~P 292 (656)
+|+|||.|.+|..+|..+...+. ++..+|...... .+.++. +.. .+-.+.+++||+|+++.-
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG 77 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG 77 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence 58999999999999998875554 799999865322 111110 111 122477899999999765
No 484
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=89.54 E-value=0.78 Score=51.58 Aligned_cols=103 Identities=17% Similarity=0.269 Sum_probs=62.7
Q ss_pred EEEEecChhHHH-HHHHHhcCCCEEEEECCCCCh--hHHHHcCCeec-C-HHHHhccCCEEEEccCCCcccc--------
Q 006212 232 LAVMGFGKVGSE-VARRAKGLGMNVIAHDPYAPA--DKARAVGVELV-S-FDQALATADFISLHMPLNPTTS-------- 298 (656)
Q Consensus 232 vGIIGlG~IG~~-vA~~lk~~G~~Vi~~d~~~~~--~~a~~~g~~~~-~-l~ell~~aDvV~l~~Plt~~T~-------- 298 (656)
+-|||+|.+|.+ +|+.|+..|.+|.++|..... +..++.|+... . -.+.+.++|+|+.. |.-+...
T Consensus 2 ~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~s-pgi~~~~p~~~~a~~ 80 (448)
T TIGR01082 2 IHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVS-AAIKDDNPEIVEAKE 80 (448)
T ss_pred EEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEEC-CCCCCCCHHHHHHHH
Confidence 679999999998 999999999999999976532 22344577553 1 23456789998775 3333221
Q ss_pred ---ccccHH-HHhc-CCCCcEEEEc-CCCchhcHHHHHHhHhc
Q 006212 299 ---KIFNDE-TFAK-MKKGVRIVNV-ARGGVIDEEALVRALDS 335 (656)
Q Consensus 299 ---~li~~~-~l~~-mK~gailINv-aRg~ivde~aL~~aL~~ 335 (656)
.++++. .+.. +++..+|-=+ +.|+--...-+...|+.
T Consensus 81 ~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~ 123 (448)
T TIGR01082 81 RGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKE 123 (448)
T ss_pred cCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHH
Confidence 123332 2222 3332233333 35777656655666654
No 485
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.53 E-value=0.75 Score=39.60 Aligned_cols=58 Identities=14% Similarity=0.261 Sum_probs=41.0
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeec-cCccEEEEEEeCC-CC-CHHHHHHHhc
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTF-RRNHGIMAIGVDE-EP-NQDSLKEIGK 620 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~-~gg~al~~i~~D~-~~-~~e~l~~L~~ 620 (656)
+.+.-+|+||.++++.++|+ +.||..+.-.|.. ..+..++.+++++ .- -+++++.|++
T Consensus 4 l~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~~~~~~~i~~~L~~ 64 (85)
T cd04906 4 LAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANGAEELAELLEDLKS 64 (85)
T ss_pred EEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCcHHHHHHHHHHHHH
Confidence 55678999999999999999 4566666665533 3444566678776 33 4477888876
No 486
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=89.51 E-value=0.35 Score=49.70 Aligned_cols=72 Identities=15% Similarity=0.299 Sum_probs=50.1
Q ss_pred cCccEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCC--CCCHHHHHHHhcCCCccEE
Q 006212 556 LEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE--EPNQDSLKEIGKVPAIEEY 627 (656)
Q Consensus 556 g~~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~--~~~~e~l~~L~~~~~V~~v 627 (656)
...|.+-|...|+||+|.+|+.+|+..|.||..+-|.-++...-.-|.|-+-. .+-+++.++|.++=.|..|
T Consensus 75 ~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~VveQa~rQiedlVnV~aV 148 (309)
T KOG2663|consen 75 VKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDGVVEQARRQIEDLVNVYAV 148 (309)
T ss_pred ccceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccHHHHHHHHHHHHHhhhhhee
Confidence 34788889999999999999999999999999999976542222212333322 2344566666666555544
No 487
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.49 E-value=0.46 Score=51.37 Aligned_cols=64 Identities=19% Similarity=0.125 Sum_probs=44.0
Q ss_pred CEEEEEec-ChhHHHHHHHHhcCCC-------EEEEECCCCChh----HHHHc---------CCee-cCHHHHhccCCEE
Q 006212 230 KTLAVMGF-GKVGSEVARRAKGLGM-------NVIAHDPYAPAD----KARAV---------GVEL-VSFDQALATADFI 287 (656)
Q Consensus 230 ktvGIIGl-G~IG~~vA~~lk~~G~-------~Vi~~d~~~~~~----~a~~~---------g~~~-~~l~ell~~aDvV 287 (656)
++|+|||. |.+|..+|..+...|. ++..+|.....+ .+.++ .+.. .+..+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 48999999 9999999999876554 788999743221 11111 1111 2456789999999
Q ss_pred EEccCC
Q 006212 288 SLHMPL 293 (656)
Q Consensus 288 ~l~~Pl 293 (656)
+++.-.
T Consensus 83 vitaG~ 88 (322)
T cd01338 83 LLVGAK 88 (322)
T ss_pred EEeCCC
Confidence 998753
No 488
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=89.42 E-value=2.7 Score=39.39 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=28.4
Q ss_pred EEEEEecChhHHHHHHHHhcCCC-EEEEECCCC
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA 262 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~ 262 (656)
+|.|+|+|.+|..+|+.|...|. ++..+|+..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999999999999999999997 788888753
No 489
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=89.38 E-value=0.83 Score=49.83 Aligned_cols=83 Identities=17% Similarity=0.187 Sum_probs=50.7
Q ss_pred CEEEEEe-cChhHHHHHHHHhcC-CCEEEEE-CCCCCh--hHH---------------HHcCCeecCHHHHhccCCEEEE
Q 006212 230 KTLAVMG-FGKVGSEVARRAKGL-GMNVIAH-DPYAPA--DKA---------------RAVGVELVSFDQALATADFISL 289 (656)
Q Consensus 230 ktvGIIG-lG~IG~~vA~~lk~~-G~~Vi~~-d~~~~~--~~a---------------~~~g~~~~~l~ell~~aDvV~l 289 (656)
.+|+|+| .|.+|+.+++.|..+ .+++.++ ...... ... ....+...+.+++ .++|+|++
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~DvVf~ 82 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAV-DDVDIVFS 82 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHh-cCCCEEEE
Confidence 5899998 999999999999876 4687776 221110 000 0011112244444 78999999
Q ss_pred ccCCCccccccccHHHHhcC-CCCcEEEEcC
Q 006212 290 HMPLNPTTSKIFNDETFAKM-KKGVRIVNVA 319 (656)
Q Consensus 290 ~~Plt~~T~~li~~~~l~~m-K~gailINva 319 (656)
|+|... ..+....+ +.|+.+||.+
T Consensus 83 a~p~~~------s~~~~~~~~~~G~~vIDls 107 (349)
T PRK08664 83 ALPSDV------AGEVEEEFAKAGKPVFSNA 107 (349)
T ss_pred eCChhH------HHHHHHHHHHCCCEEEECC
Confidence 999432 12222222 5677778776
No 490
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=89.29 E-value=1.1 Score=47.56 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=29.1
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCE-EEEECCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMN-VIAHDPY 261 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~-Vi~~d~~ 261 (656)
.|+++.|+|.|.||...++.++.+|.+ |++.|..
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~ 178 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETN 178 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Confidence 478899999999999999999999997 5556654
No 491
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=89.04 E-value=0.87 Score=54.13 Aligned_cols=68 Identities=13% Similarity=0.201 Sum_probs=52.7
Q ss_pred EEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEE--EEeCCCCCH-HHHHHHhcCCCccEEE
Q 006212 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMA--IGVDEEPNQ-DSLKEIGKVPAIEEYT 628 (656)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~--i~~D~~~~~-e~l~~L~~~~~V~~v~ 628 (656)
.|.+...|++|+++.|++++++.++||.++++... .++.+.+. |++.+...- .++.+|+++++|.+|+
T Consensus 612 ~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~-~~~~~~~~~~ieV~~~~~L~~ii~~L~~i~~V~~v~ 682 (683)
T TIGR00691 612 DINIEAVDRKGVLSDLTTAISENDSNIVSISTKTY-GKREAILNITVEIKNYKHLLKIMLKIKTKNDVIVVK 682 (683)
T ss_pred EEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEc-CCCEEEEEEEEEECCHHHHHHHHHHHhCCCCceEEe
Confidence 44567899999999999999999999999998543 34555544 444544333 8899999999998874
No 492
>PRK06392 homoserine dehydrogenase; Provisional
Probab=88.97 E-value=1.9 Score=46.66 Aligned_cols=104 Identities=20% Similarity=0.382 Sum_probs=58.3
Q ss_pred EEEEEecChhHHHHHHHHhc--------CCCEEEE-ECCCC--------ChhHH---HHcC----C--eecCHHHHh-cc
Q 006212 231 TLAVMGFGKVGSEVARRAKG--------LGMNVIA-HDPYA--------PADKA---RAVG----V--ELVSFDQAL-AT 283 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~--------~G~~Vi~-~d~~~--------~~~~a---~~~g----~--~~~~l~ell-~~ 283 (656)
+|+|+|+|.+|+.+++.+.. ++++|.+ +|+.. ..+.. .+.| . ...++++++ .+
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~~ 81 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEIK 81 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcCC
Confidence 79999999999999999865 5677665 34331 11111 1111 1 112455554 46
Q ss_pred CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchh-cHHHHHHhHhc
Q 006212 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI-DEEALVRALDS 335 (656)
Q Consensus 284 aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~iv-de~aL~~aL~~ 335 (656)
+|+|+=|+|...+-..-. .-..+.|+.|.-+|-...|.+. ..+.|.++.++
T Consensus 82 ~DVvVE~t~~~~~g~~~~-~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~ 133 (326)
T PRK06392 82 PDVIVDVTPASKDGIREK-NLYINAFEHGIDVVTANKSGLANHWHDIMDSASK 133 (326)
T ss_pred CCEEEECCCCCCcCchHH-HHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHH
Confidence 788888887432101111 1123346677777777666665 25555554444
No 493
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=88.81 E-value=1.8 Score=46.08 Aligned_cols=45 Identities=31% Similarity=0.451 Sum_probs=36.3
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|++|.|.|.|.+|..+++.++++|.+|++.++.. ..+.+.+.|+
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~ 208 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGA 208 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCC
Confidence 47899999999999999999999999999988764 3344444554
No 494
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=88.59 E-value=2.1 Score=50.71 Aligned_cols=36 Identities=28% Similarity=0.343 Sum_probs=32.7
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
-.+|+|.|||.|..|...|..|...|++|.++|+..
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~ 226 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANE 226 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 368999999999999999999999999999998653
No 495
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=88.55 E-value=0.88 Score=49.66 Aligned_cols=85 Identities=15% Similarity=0.174 Sum_probs=50.8
Q ss_pred CCCEEEEEe-cChhHHHHHHHHhcCCC---EEEEE--CCCCChhHHHHcCC--eecCHH-HHhccCCEEEEccCCCcccc
Q 006212 228 VGKTLAVMG-FGKVGSEVARRAKGLGM---NVIAH--DPYAPADKARAVGV--ELVSFD-QALATADFISLHMPLNPTTS 298 (656)
Q Consensus 228 ~gktvGIIG-lG~IG~~vA~~lk~~G~---~Vi~~--d~~~~~~~a~~~g~--~~~~l~-ell~~aDvV~l~~Plt~~T~ 298 (656)
...+|+|+| .|.+|+.+.+.|...++ ++... .++.... ....+. .+.+++ +.+.++|+|++|+|.. .
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~-~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~-~-- 81 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKK-VTFEGRDYTVEELTEDSFDGVDIALFSAGGS-I-- 81 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCe-eeecCceeEEEeCCHHHHcCCCEEEECCCcH-H--
Confidence 456899998 58999999999987443 33322 3222111 111122 121222 3458999999999944 2
Q ss_pred ccccHHHHhc-CCCCcEEEEcC
Q 006212 299 KIFNDETFAK-MKKGVRIVNVA 319 (656)
Q Consensus 299 ~li~~~~l~~-mK~gailINva 319 (656)
..+.... .+.|+.+||.+
T Consensus 82 ---s~~~~~~~~~~g~~VIDlS 100 (344)
T PLN02383 82 ---SKKFGPIAVDKGAVVVDNS 100 (344)
T ss_pred ---HHHHHHHHHhCCCEEEECC
Confidence 2333222 36799999998
No 496
>PRK10537 voltage-gated potassium channel; Provisional
Probab=88.47 E-value=1.2 Score=49.53 Aligned_cols=65 Identities=12% Similarity=0.073 Sum_probs=43.9
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeec-----CHHH----HhccCCEEEEccCCC
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-----SFDQ----ALATADFISLHMPLN 294 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~-----~l~e----ll~~aDvV~l~~Plt 294 (656)
...+-|+|+|.+|+.+++.|+..|.++.+.|+.. .+.....|+..+ +.+. -+++|+.|+++++.+
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~-~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD 313 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLG-LEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDND 313 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECch-hhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCCh
Confidence 5679999999999999999998899988888653 222333343221 2221 256777777777643
No 497
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=88.42 E-value=1.4 Score=49.98 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=32.3
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCC
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~ 261 (656)
-.|++|.|||-|.+|...|..|+..|++|..|+..
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~ 173 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRH 173 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 47899999999999999999999999999999865
No 498
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=88.35 E-value=1.2 Score=48.10 Aligned_cols=62 Identities=19% Similarity=0.131 Sum_probs=43.4
Q ss_pred EEEEEec-ChhHHHHHHHHhcCCC-------EEEEECCCCC----hhHHHHcC---------Cee-cCHHHHhccCCEEE
Q 006212 231 TLAVMGF-GKVGSEVARRAKGLGM-------NVIAHDPYAP----ADKARAVG---------VEL-VSFDQALATADFIS 288 (656)
Q Consensus 231 tvGIIGl-G~IG~~vA~~lk~~G~-------~Vi~~d~~~~----~~~a~~~g---------~~~-~~l~ell~~aDvV~ 288 (656)
+|+|||. |.+|..+|..+...|. ++..+|.... ...+.++. +.. .+..+.+++||+|+
T Consensus 5 KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvVV 84 (323)
T TIGR01759 5 RVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAAL 84 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEEE
Confidence 7999998 9999999999886664 7999997431 11121111 111 24567899999999
Q ss_pred EccC
Q 006212 289 LHMP 292 (656)
Q Consensus 289 l~~P 292 (656)
++.-
T Consensus 85 itAG 88 (323)
T TIGR01759 85 LVGA 88 (323)
T ss_pred EeCC
Confidence 9765
No 499
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=88.33 E-value=1.4 Score=51.13 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=33.0
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCC
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~ 261 (656)
.-.|++|.|||.|.+|-..|..|+..|++|+++|+.
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~ 169 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAG 169 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 457999999999999999999999999999999854
No 500
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=88.23 E-value=1.6 Score=44.92 Aligned_cols=88 Identities=26% Similarity=0.305 Sum_probs=55.9
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCE-EEEECCCC-ChhHHHHcC-Cee-cCHH-HH--hccCCEEEEccCCCcccccc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMN-VIAHDPYA-PADKARAVG-VEL-VSFD-QA--LATADFISLHMPLNPTTSKI 300 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~-Vi~~d~~~-~~~~a~~~g-~~~-~~l~-el--l~~aDvV~l~~Plt~~T~~l 300 (656)
.|.++.|.|.|.+|..+++.++.+|.+ |++.++.. ..+.+++.| ... .... .. -...|+++-++....
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~----- 171 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPS----- 171 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChH-----
Confidence 578999999999999999999999998 99888654 334555556 211 1111 11 124677766554211
Q ss_pred ccHHHHhcCCCCcEEEEcCC
Q 006212 301 FNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 301 i~~~~l~~mK~gailINvaR 320 (656)
.-...+..|+++..+++++-
T Consensus 172 ~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 172 ALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred HHHHHHHHhcCCcEEEEEec
Confidence 12344556777777777653
Done!