RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 006212
(656 letters)
>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 184
Score = 152 bits (384), Expect = 2e-43
Identities = 87/185 (47%), Positives = 116/185 (62%), Gaps = 1/185 (0%)
Query: 186 NTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVA 245
N +AAEH +ALL + +R + ADAS++ W RS + G + GKT+ V+G G++G VA
Sbjct: 1 NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVA 60
Query: 246 RRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDET 305
+R G V+A+DPY +A +G+EL+S D LA ADFIS+H+P P T+ + + E
Sbjct: 61 QRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEA 120
Query: 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTV 365
AK K GV IVN ARGG++DE AL A+ G V A LDVF EP DS L + V V
Sbjct: 121 LAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPC-TDSPLFELAQVVV 179
Query: 366 TPHLG 370
TPHLG
Sbjct: 180 TPHLG 184
>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase
{Hyphomicrobium methylovorum [TaxId: 84]}
Length = 191
Score = 147 bits (372), Expect = 1e-41
Identities = 63/191 (32%), Positives = 94/191 (49%), Gaps = 6/191 (3%)
Query: 187 TVAAAEHGIALLASMARNVSQADASIKAGKWL---RSKYVGVSLVGKTLAVMGFGKVGSE 243
TVA AE + LL AR + + I+ W + VG L KTL + GFG +G
Sbjct: 2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQA 61
Query: 244 VARRAKGLGMNVIAHDPYAPADKARA--VGVELVSFDQALATADFISLHMPLNPTTSKIF 301
+A+RA+G M++ D + + A S D L+ + F SL+ P P T F
Sbjct: 62 LAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFF 121
Query: 302 NDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHE 361
N T + +G +VN ARG ++D E +V AL++G +A A DVF EP +
Sbjct: 122 NKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPN-INEGYYDLP 180
Query: 362 NVTVTPHLGAS 372
N + PH+G++
Sbjct: 181 NTFLFPHIGSA 191
>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp.,
strain 101 [TaxId: 306]}
Length = 188
Score = 141 bits (356), Expect = 1e-39
Identities = 51/187 (27%), Positives = 86/187 (45%), Gaps = 4/187 (2%)
Query: 188 VAAAEHGIALLASMARNVSQADASIKAGKWLRSKYV--GVSLVGKTLAVMGFGKVGSEVA 245
++ AEH + ++ S+ RN + + G W + V L + + G++G V
Sbjct: 1 ISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVL 60
Query: 246 RRAKGLGMNVIAHDPYAPADKARAVG--VELVSFDQALATADFISLHMPLNPTTSKIFND 303
RR +++ D + + + + D ++L+ PL+P T + ND
Sbjct: 61 RRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMIND 120
Query: 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENV 363
ET K+G IVN ARG + D +A+ RAL+SG +A A DV+ +P KD
Sbjct: 121 ETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYN 180
Query: 364 TVTPHLG 370
+TPH+
Sbjct: 181 GMTPHIS 187
>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase
{Escherichia coli [TaxId: 562]}
Length = 188
Score = 135 bits (340), Expect = 2e-37
Identities = 63/189 (33%), Positives = 95/189 (50%), Gaps = 6/189 (3%)
Query: 186 NTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVA 245
NT + AE I L + R V +A+A G + GK L ++G+G +G+++
Sbjct: 1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLG 60
Query: 246 RRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDET 305
A+ LGM V +D A V+ L +D +SLH+P NP+T + +
Sbjct: 61 ILAESLGMYVYFYDIENKLPLGNATQVQ--HLSDLLNMSDVVSLHVPENPSTKNMMGAKE 118
Query: 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKD----SKLVQHE 361
+ MK G ++N +RG V+D AL AL S +A AA+DVF EP S L + +
Sbjct: 119 ISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFD 178
Query: 362 NVTVTPHLG 370
NV +TPH+G
Sbjct: 179 NVLLTPHIG 187
>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human
(Homo sapiens), Ctbp1 [TaxId: 9606]}
Length = 193
Score = 124 bits (312), Expect = 2e-33
Identities = 61/187 (32%), Positives = 98/187 (52%), Gaps = 9/187 (4%)
Query: 191 AEHGIALLASMARNVSQADASIKAGKWLRSK-------YVGVSLVGKTLAVMGFGKVGSE 243
A+ + + ++ R + +++ G ++S + G+TL ++G G+VG
Sbjct: 4 ADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQA 63
Query: 244 VARRAKGLGMNVIAHDPYAPADKARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIFN 302
VA RAK G NV+ +DPY RA+G++ + + L +D ++LH LN + N
Sbjct: 64 VALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIN 123
Query: 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEP-PAKDSKLVQHE 361
D T +M++G +VN ARGG++DE+AL +AL G + AALDV EP L
Sbjct: 124 DFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAP 183
Query: 362 NVTVTPH 368
N+ TPH
Sbjct: 184 NLICTPH 190
>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus
helveticus [TaxId: 1587]}
Length = 197
Score = 109 bits (271), Expect = 7e-28
Identities = 60/193 (31%), Positives = 91/193 (47%), Gaps = 14/193 (7%)
Query: 189 AAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRA 248
A AEH A + R D + + +G + + + V+G G +G +
Sbjct: 3 AIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIM 62
Query: 249 KGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAK 308
+G G VI +D + + G + S D AD ISLH+P P + NDE+ AK
Sbjct: 63 EGFGAKVITYDIF-RNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAK 121
Query: 309 MKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPP-------------AKDS 355
MK+ V IVNV+RG ++D +A++R LDSG + A+DV+ E A+ +
Sbjct: 122 MKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLA 181
Query: 356 KLVQHENVTVTPH 368
L+ NV VTP
Sbjct: 182 DLIARPNVLVTPK 194
>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 130
Score = 97.9 bits (243), Expect = 8e-25
Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 1/129 (0%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEA 149
P +L+++KL + +A L V + + L + + DAL+VRS T V V A
Sbjct: 2 LPVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAA 61
Query: 150 ANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQAD 209
A KLK+V RAGVG+DNVD+ AAT G LVVNAP + + A A+ + + ++ A
Sbjct: 62 AP-KLKIVARAGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAG 120
Query: 210 ASIKAGKWL 218
+ +
Sbjct: 121 EFVPDAVNV 129
>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 181
Score = 98.3 bits (243), Expect = 3e-24
Identities = 50/187 (26%), Positives = 80/187 (42%), Gaps = 8/187 (4%)
Query: 185 ANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEV 244
A+ VA E +ALL + + + Q +K G + R + + G+ +AV+G G++G+ V
Sbjct: 1 ADAVA--EFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPLI-QGEKVAVLGLGEIGTRV 57
Query: 245 ARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDE 304
+ LG V R S ++AL A +PLN T + +
Sbjct: 58 GKILAALGAQVRGFSRTPKEGPWRFT----NSLEEALREARAAVCALPLNKHTRGLVKYQ 113
Query: 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFT-EEPPAKDSKLVQHENV 363
A M + VNV R V+D + ++R L A DV+ AKD++ NV
Sbjct: 114 HLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNV 173
Query: 364 TVTPHLG 370
TP +
Sbjct: 174 VATPWVA 180
>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase
{Hyphomicrobium methylovorum [TaxId: 84]}
Length = 129
Score = 93.5 bits (232), Expect = 3e-23
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 3/125 (2%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYD---LSPEALCEKISQCDALIVRSGTKVTRSV 146
K IL++ L EA +A R +V D ++ + + E DAL++ K + V
Sbjct: 1 KKKILITWPLPEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEV 60
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
+ +K + +G D++DL A G V NAP T A + +
Sbjct: 61 IDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDALFG 120
Query: 207 QADAS 211
AD S
Sbjct: 121 GADMS 125
>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor
CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}
Length = 133
Score = 88.1 bits (218), Expect = 3e-21
Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 4/129 (3%)
Query: 91 PTILVSEKL-GEAGLAILRSFGNVECLYDLSPEALCEKI-SQCDALIVRSGTKVTRSVFE 148
P + + + + IL+ V S + + EK+ ++ ++ +TR E
Sbjct: 2 PLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLE 61
Query: 149 AANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQA 208
L+++ R G G DN+D+++A + G V N P A+ + + I + AR + +A
Sbjct: 62 KFK-ALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASV-YSEQASIEMREEAAREIRRA 119
Query: 209 DASIKAGKW 217
Sbjct: 120 ITGRIPDSL 128
>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase
{Lactobacillus casei [TaxId: 1582]}
Length = 199
Score = 88.7 bits (218), Expect = 9e-21
Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 16/198 (8%)
Query: 187 TVAAAEHGIALLASMARNVSQADASIKAGKWLRS-KYVGVSLVGKTLAVMGFGKVGSEVA 245
A AE + + RN+ + A ++AG + ++ ++G L +T+ VMG G +G
Sbjct: 2 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAI 61
Query: 246 RRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDET 305
+ KG G VIA+DPY VS + +D I LH+P + I N+
Sbjct: 62 KLFKGFGAKVIAYDPYPMKGDHPDFDY--VSLEDLFKQSDVIDLHVPGIEQNTHIINEAA 119
Query: 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKD----------- 354
F MK G ++N AR +ID +A++ L SG +A +D + E
Sbjct: 120 FNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDP 179
Query: 355 --SKLVQHENVTVTPHLG 370
+L+ NV ++PH+
Sbjct: 180 LWDELLGMPNVVLSPHIA 197
>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate
dehydrogenase {Escherichia coli [TaxId: 562]}
Length = 132
Score = 85.1 bits (210), Expect = 3e-20
Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 6/131 (4%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLY---DLSPEALCEKISQCDALIVRSGTKVTRSV 146
K L+ E + + L LR+ G + L E L E I + +RS T +T V
Sbjct: 4 KIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDV 63
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
A KL +G +G + VDL AA + G V NAP ++T A E+ +A + +
Sbjct: 64 INA-AEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVA--GKLIK 120
Query: 207 QADASIKAGKW 217
+D
Sbjct: 121 YSDNGSTLSAV 131
>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate
dehydrogenase {Lactobacillus casei [TaxId: 1582]}
Length = 131
Score = 79.3 bits (195), Expect = 3e-18
Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 1/104 (0%)
Query: 113 VECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEA-ANGKLKVVGRAGVGIDNVDLQA 171
+E + E E D + T VFE +K + VG DN+D+ A
Sbjct: 27 LEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTA 86
Query: 172 ATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAG 215
++G + N P A L + +++ + S +
Sbjct: 87 MKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKGETSTEVT 130
>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase
{Lactobacillus helveticus [TaxId: 1587]}
Length = 134
Score = 78.8 bits (194), Expect = 4e-18
Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 6/114 (5%)
Query: 107 LRSFGNVECLY--DLSPEALCEKISQCDALIVRSGTKVTRSVFEA-ANGKLKVVGRAGVG 163
+ +VE Y L D ++V +A A+ + + VG
Sbjct: 20 EDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVG 79
Query: 164 IDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKW 217
+DN+D+ A E G + N P + H + + A + + K +
Sbjct: 80 VDNIDMAKAKELGFQITNVP---VYSYTTHAVRNMVVKAFDNNLELVEGKEAET 130
>d1ygya4 d.81.2.2 (A:317-451) D-3-phosphoglycerate dehydrogenase
SerA {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 135
Score = 76.9 bits (189), Expect = 2e-17
Identities = 28/148 (18%), Positives = 57/148 (38%), Gaps = 20/148 (13%)
Query: 409 EVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGII 468
V E+AP++ L +KLG LA L S+ + R + + +LR +G+
Sbjct: 3 VVNEEVAPWLDLVRKLGVLAGVLS--DELPVSLSVQVRG--ELAAEEVEVLRLSALRGLF 58
Query: 469 EPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSEN 528
+ + VNA A ++G+ + A SP + V+ ++
Sbjct: 59 SAVIEDAVTFVNAPALAAERGVTAEICK--ASESPNHR-SVVDVRAVG---------ADG 106
Query: 529 GEISIEGKVKFG---IPHLTRVGSFGVD 553
+++ G + +G + ++ D
Sbjct: 107 SVVTVSGTL-YGPQLSQKIVQINGRHFD 133
>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase
{Pseudomonas sp., strain 101 [TaxId: 306]}
Length = 186
Score = 75.0 bits (184), Expect = 3e-16
Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 18/161 (11%)
Query: 74 HVSKFQDD---LNVQAVTPKPTILVSEKLGEAGLA-ILRSFGN-VECLYDLSPEA--LCE 126
+ + +A+ P L+ GE GL L S G+ + D
Sbjct: 26 KIDHYPGGQTLPTPKAIDFTPGQLLGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFER 85
Query: 127 KISQCDALIVRS--GTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPI 184
++ D +I + +T A LK+ AG+G D+VDLQ+A + V
Sbjct: 86 ELVDADVVISQPFWPAYLTPERIAKAK-NLKLALTAGIGSDHVDLQSAIDRNVTVAEVTY 144
Query: 185 ANTVAAAEH--------GIALLASMARNVSQADASIKAGKW 217
N+ I R + ++ G
Sbjct: 145 CNSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGAL 185
>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 163
Score = 66.9 bits (163), Expect = 1e-13
Identities = 26/127 (20%), Positives = 41/127 (32%), Gaps = 4/127 (3%)
Query: 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALAT 283
V + GK V G+G VG A+ +G G VI + A+ V +
Sbjct: 19 DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEV---TTMDE 75
Query: 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNV-ARGGVIDEEALVRALDSGVVAQAA 342
A I F +MK + N+ ID + L V +
Sbjct: 76 ACQEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQ 135
Query: 343 LDVFTEE 349
+D + +
Sbjct: 136 VDRYRLK 142
>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase,
regulatory (C-terminal) domain {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 78
Score = 64.1 bits (156), Expect = 1e-13
Identities = 16/77 (20%), Positives = 34/77 (44%)
Query: 557 EGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLK 616
+G ++ VD+PG +GK+G +LG VN+ + + + +D++ D
Sbjct: 2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRT 61
Query: 617 EIGKVPAIEEYTLLHVS 633
I + ++ +S
Sbjct: 62 AIAAAVDAYKLEVVDLS 78
>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 121
Score = 62.7 bits (152), Expect = 1e-12
Identities = 19/160 (11%), Positives = 43/160 (26%), Gaps = 41/160 (25%)
Query: 93 ILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANG 152
+ V+ +L LR + + + +A +V +++T
Sbjct: 3 LYVNFELPPEAEEELRKYFKIVR---------GGDLGNVEAALV---SRITAEELAKMP- 49
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
+LK + G+D++ ++ V +N ++ R
Sbjct: 50 RLKFIQVVTAGLDHLPWESIPP-HVTVAGNAGSNGYGNERVWRQMVMEAVR--------- 99
Query: 213 KAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLG 252
L G +A+R +G
Sbjct: 100 ------------------NLITYATGGRPRNIAKREDYIG 121
>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase,
regulatory (C-terminal) domain {Escherichia coli [TaxId:
562]}
Length = 84
Score = 59.7 bits (145), Expect = 5e-12
Identities = 14/74 (18%), Positives = 35/74 (47%)
Query: 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKE 617
G ++ ++PG++ + I E VN+ + + + + ++ I DE+ + +L+
Sbjct: 11 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQA 70
Query: 618 IGKVPAIEEYTLLH 631
+ +P LL+
Sbjct: 71 MKAIPGTIRARLLY 84
>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase
{Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}
Length = 163
Score = 51.8 bits (124), Expect = 2e-08
Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 8/111 (7%)
Query: 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALA 282
+ GK + + G+G VG A KGLG V + A +A G +V+ D+ +
Sbjct: 18 DFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVD 77
Query: 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRAL 333
DF + E KMK + N+ D+E V L
Sbjct: 78 KGDFFITC----TGNVDVIKLEHLLKMKNNAVVGNIGHF---DDEIQVNEL 121
>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1
{Salmonella typhimurium [TaxId: 90371]}
Length = 113
Score = 41.6 bits (97), Expect = 3e-05
Identities = 15/96 (15%), Positives = 24/96 (25%), Gaps = 1/96 (1%)
Query: 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALAT 283
L + ++G G V AR G + + P A L +
Sbjct: 8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDE 67
Query: 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319
S + + T N + NV
Sbjct: 68 TLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNVV 103
>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos
taurus) [TaxId: 9913]}
Length = 293
Score = 42.8 bits (100), Expect = 7e-05
Identities = 13/52 (25%), Positives = 19/52 (36%)
Query: 208 ADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHD 259
+ I+ ++ + KT AV GFG VG R G +A
Sbjct: 15 IENFIENASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVG 66
>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum
islandicum [TaxId: 2277]}
Length = 242
Score = 41.7 bits (97), Expect = 1e-04
Identities = 28/148 (18%), Positives = 46/148 (31%), Gaps = 6/148 (4%)
Query: 221 KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQA 280
K + + GKT+A+ G G VG A + +G VIA + +
Sbjct: 23 KKLWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNK 82
Query: 281 LATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQ 340
T + + N + K+ + + A VI + VV
Sbjct: 83 GLTGPALVELFTTKDNAEFVKNPDAIFKLDVDIFVPA-AIENVIRGDNAGLVKARLVVEG 141
Query: 341 AALDVFTEEPPAKDSKLVQHENVTVTPH 368
A P A+ ++ V V P
Sbjct: 142 ANGPT---TPEAER--ILYERGVVVVPD 164
>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus
sphaericus [TaxId: 1421]}
Length = 230
Score = 40.4 bits (94), Expect = 3e-04
Identities = 10/48 (20%), Positives = 19/48 (39%)
Query: 217 WLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA 264
+ + SL G ++V G G V + ++ G ++ D A
Sbjct: 27 AAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAA 74
>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase
{Rhodococcus sp., M4 [TaxId: 1831]}
Length = 201
Score = 37.4 bits (86), Expect = 0.002
Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 4/103 (3%)
Query: 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATAD 285
SL G T+ V G G VG +A A G ++ A AV + + +
Sbjct: 24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLL-VADTDTERVAHAVALGHTAVALEDVLST 82
Query: 286 FISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEA 328
+ P + E + V + A + DE A
Sbjct: 83 PCDVFAPCAM--GGVITTEVARTLDCSV-VAGAANNVIADEAA 122
>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium
symbiosum [TaxId: 1512]}
Length = 255
Score = 37.0 bits (85), Expect = 0.005
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 221 KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257
K+ +LVGKT+A+ GFG V A++ LG +
Sbjct: 28 KHENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVT 64
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 71
Score = 33.9 bits (78), Expect = 0.006
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 567 DQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE 608
+ PG + KV L V + +M N + I
Sbjct: 8 NVPGALAKVLGFLSAEGVFIEYMYSFAN--NNVANVVIRPSN 47
>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide
transformylase PurT, N-domain {Escherichia coli [TaxId:
562]}
Length = 111
Score = 34.5 bits (79), Expect = 0.007
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY--APADKARAVGVELVSFDQALATADF 286
+ ++G G++G EVA + LG+ VIA D Y APA A +++ A
Sbjct: 11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHV-AHRSHVINMLDGDALRRV 69
Query: 287 ISLHMPLNPT-TSKIFNDETFAKM-KKGVRIVNVAR 320
+ L P + + ++ ++G+ +V AR
Sbjct: 70 VELEKPHYIVPEIEAIATDMLIQLEEEGLNVVPCAR 105
>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide
synthetase PurK (AIRC), N-domain {Escherichia coli
[TaxId: 562]}
Length = 78
Score = 33.6 bits (77), Expect = 0.008
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 10/71 (14%)
Query: 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARA----VGVELVSFDQALATA- 284
K + V+G G++G + + + LG+ V A + E+ + + T
Sbjct: 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFQQSVITAEIERWPETALTRQ 61
Query: 285 -----DFISLH 290
F++
Sbjct: 62 LARHPAFVNRD 72
>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium
lapideum [TaxId: 32060]}
Length = 168
Score = 35.3 bits (81), Expect = 0.010
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 14/105 (13%)
Query: 233 AVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA---------DKARAVGVELVSFDQALAT 283
++G G VG+E A+ A GLG V D + + + A+A
Sbjct: 36 VILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAE 95
Query: 284 ADFI--SLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA--RGGVI 324
AD + ++ +P + +M+ G IV+VA +GG +
Sbjct: 96 ADLLIGAVLVPGRRAP-ILVPASLVEQMRTGSVIVDVAVDQGGCV 139
>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga
maritima [TaxId: 2336]}
Length = 234
Score = 35.5 bits (81), Expect = 0.014
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 221 KYVGVSLVGKTLAVMGFGKVGSEVARR-AKGLGMNVIAHDPY 261
+G+ T+AV GFG VG A ++ LG V+A
Sbjct: 23 DVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDS 64
>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 165
Score = 34.8 bits (78), Expect = 0.014
Identities = 17/162 (10%), Positives = 44/162 (27%), Gaps = 7/162 (4%)
Query: 232 LAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLH 290
+ V+G G +G+ +A + G +I +KA + + +
Sbjct: 3 IGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIF 62
Query: 291 MPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEP 350
+ ++ + + +VA E + + +
Sbjct: 63 LCTPIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPMAGTAAQGI 122
Query: 351 PAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGAL 392
+ L + +TP + + +V+ L
Sbjct: 123 DGAEENLFVNAPYVLTPTEYTDPE------QLACLRSVLEPL 158
>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId:
1423]}
Length = 134
Score = 33.0 bits (74), Expect = 0.033
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261
K AV+G G+ G + + +G V+A D
Sbjct: 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN 32
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate
ligase MurD {Escherichia coli [TaxId: 562]}
Length = 93
Score = 32.0 bits (72), Expect = 0.046
Identities = 19/93 (20%), Positives = 28/93 (30%), Gaps = 10/93 (10%)
Query: 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHD----PYAPADKARAVGVELVSFD-QALAT 283
GK + ++G G G G+ D P AV S + + L
Sbjct: 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMA 64
Query: 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIV 316
AD I + + A G+ IV
Sbjct: 65 ADLIVASPGIALA-----HPSLSAAADAGIEIV 92
>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 70
Score = 28.5 bits (64), Expect = 0.38
Identities = 10/54 (18%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 567 DQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE-EPNQDSLKEIG 619
++ G + +V +L + N+N++ + + + GI+ V + + +LK+
Sbjct: 12 NKSGRLTEVTEVLAKENINLSALCIAEN--ADFGILRGIVSDPDKAYKALKDNH 63
>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase
(KARI) {Pseudomonas aeruginosa [TaxId: 287]}
Length = 182
Score = 30.2 bits (68), Expect = 0.44
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIA--HDPYAPADKARAVGVELVSFDQALATA 284
+ GK +A++G+G G A K G++V A KA A G+++ A+A A
Sbjct: 14 IQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAA 73
Query: 285 DFISLHMPLNPTTSKIFNDETFAKMKKG 312
D + + P + +++ +E +KKG
Sbjct: 74 DVVMILTP-DEFQGRLYKEEIEPNLKKG 100
>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor
VC2159 {Vibrio cholerae [TaxId: 666]}
Length = 86
Score = 28.6 bits (64), Expect = 0.57
Identities = 7/43 (16%), Positives = 17/43 (39%)
Query: 567 DQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE 609
D+PG+ +V ++ + N+ + + +M I
Sbjct: 14 DRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPS 56
>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase
{Azotobacter vinelandii [TaxId: 354]}
Length = 229
Score = 30.0 bits (66), Expect = 0.68
Identities = 12/60 (20%), Positives = 24/60 (40%)
Query: 232 LAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHM 291
+ V+G G G A ++ LG+ + Y + A+G ++ + A S +
Sbjct: 6 VIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYK 65
>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 239
Score = 30.1 bits (67), Expect = 0.70
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 226 SLVGKTLAVMGFGKVGSEVARR 247
+L GKT+A+ G+G G +A+
Sbjct: 29 TLKGKTIAIQGYGNAGYYLAKI 50
>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 83
Score = 28.2 bits (63), Expect = 0.75
Identities = 9/51 (17%), Positives = 22/51 (43%)
Query: 567 DQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKE 617
D+ G++ V + E +N++ +S + + DE+ + L+
Sbjct: 11 DKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRN 61
>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch
{Escherichia coli [TaxId: 562]}
Length = 153
Score = 29.5 bits (65), Expect = 0.77
Identities = 6/36 (16%), Positives = 9/36 (25%)
Query: 234 VMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARA 269
V G + + G NV D +
Sbjct: 8 VCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQL 43
>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase
{Pseudomonas putida [TaxId: 303]}
Length = 220
Score = 30.0 bits (66), Expect = 0.82
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 232 LAVMGFGKVGSEVARRAKGLGMNVI 256
L ++G G G A RA LG+ +
Sbjct: 8 LLIIGGGPGGYVAAIRAGQLGIPTV 32
>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex
aeolicus [TaxId: 63363]}
Length = 171
Score = 29.6 bits (65), Expect = 0.82
Identities = 18/169 (10%), Positives = 47/169 (27%), Gaps = 12/169 (7%)
Query: 230 KTLAVMGFGKVGSEVAR--RAKGLGMNVIAHDP---YAPADKARAVGVELVSFDQALATA 284
+ + ++G G +G A+ R G + +D + E + +
Sbjct: 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDF 61
Query: 285 DFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALD 344
+ + T + + + + + + L L V +
Sbjct: 62 SPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIA 121
Query: 345 VFTEEPP-AKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGAL 392
+ L + + V +TP K +++ + V +
Sbjct: 122 GTEKSGVEYSLDNLYEGKKVILTPTKKTDKK------RLKLVKRVWEDV 164
>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide
dehydrogenase {Neisseria meningitidis [TaxId: 487]}
Length = 229
Score = 29.9 bits (66), Expect = 0.89
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 232 LAVMGFGKVGSEVARRAKGLGMNVI 256
+ V+G G G A A G+ V
Sbjct: 9 VVVLGGGPGGYSAAFAAADEGLKVA 33
>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA
{Aspergillus nidulans [TaxId: 162425]}
Length = 350
Score = 30.0 bits (66), Expect = 0.91
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 230 KTLAVMG-FGKVGSEVARRAKGLGMNVIA--HDPYAPADKARAV--GVELVSFD 278
KT+AV+G G+ G+ + R A +G +V A H + V L
Sbjct: 4 KTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGP 57
>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin
reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 235
Score = 29.7 bits (65), Expect = 0.92
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 232 LAVMGFGKVGSEVARRAKGLGMNVI 256
L ++G G G A+ A V+
Sbjct: 6 LIIIGGGSGGLAAAKEAAKFDKKVM 30
>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 221
Score = 29.5 bits (65), Expect = 0.94
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 232 LAVMGFGKVGSEVARRAKGLGMNV 255
V+G G G ARRA LG
Sbjct: 6 YLVIGGGSGGLASARRAAELGARA 29
>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 132
Score = 28.7 bits (63), Expect = 1.0
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 234 VMGFGKVGSEVARRAKGLGMNVIAHDP 260
+ G G+VG +A+ G +++ D
Sbjct: 5 IAGIGRVGYTLAKSLSEKGHDIVLIDI 31
>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide
transhydrogenase dI component {Rhodospirillum rubrum
[TaxId: 1085]}
Length = 183
Score = 29.2 bits (65), Expect = 1.0
Identities = 26/126 (20%), Positives = 36/126 (28%), Gaps = 36/126 (28%)
Query: 234 VMGFGKVGSEVARRAKGLGMNVIAHD-------------------------------PYA 262
V G G G + AK LG V+A D YA
Sbjct: 34 VFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYA 93
Query: 263 PADKARAVGVELVSFDQALATADFISLHMPLNP--TTSKIFNDETFAKMKKGVRIVNVA- 319
+ + + L D L P + +E KMK G I+++A
Sbjct: 94 KEMGEEFRKKQAEAVLKELVKTDIAITTA-LIPGKPAPVLITEEMVTKMKPGSVIIDLAV 152
Query: 320 -RGGVI 324
GG
Sbjct: 153 EAGGNC 158
>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase
{Escherichia coli [TaxId: 562]}
Length = 217
Score = 29.1 bits (64), Expect = 1.2
Identities = 6/24 (25%), Positives = 7/24 (29%)
Query: 232 LAVMGFGKVGSEVARRAKGLGMNV 255
+G G G RA G
Sbjct: 5 YIAIGGGSGGIASINRAAMYGQKC 28
>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl
coenzyme M oxidoreductase/carboxylase {Xanthobacter sp.,
py2 [TaxId: 35809]}
Length = 261
Score = 29.5 bits (65), Expect = 1.2
Identities = 4/24 (16%), Positives = 8/24 (33%)
Query: 232 LAVMGFGKVGSEVARRAKGLGMNV 255
+G G G + + +G
Sbjct: 45 AIFIGGGAAGRFGSAYLRAMGGRQ 68
>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor
VC2159 {Vibrio cholerae [TaxId: 666]}
Length = 93
Score = 27.6 bits (61), Expect = 1.3
Identities = 3/20 (15%), Positives = 8/20 (40%)
Query: 567 DQPGMIGKVGNILGEHNVNV 586
D+ G+ K + + +
Sbjct: 15 DKLGLTEKFTQFFAQRQIGM 34
>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal
domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 77
Score = 27.4 bits (61), Expect = 1.4
Identities = 7/52 (13%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 567 DQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEI 618
++ G++ + I+ E N+ F + + E ++I
Sbjct: 10 NKIGVLRDLTTIIAEEGGNITFAQT-FLIKHGEHEGKALIYFEIEGGDFEKI 60
>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 223
Score = 29.0 bits (64), Expect = 1.4
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 232 LAVMGFGKVGSEVARRAKGLGMNVI 256
V+G G G A RA LG V
Sbjct: 6 TLVVGAGPGGYVAAIRAAQLGQKVT 30
>d2ikba1 d.2.1.9 (A:1-163) Hypothetical protein NMB1012 {Neisseria
meningitidis [TaxId: 487]}
Length = 163
Score = 28.4 bits (63), Expect = 1.8
Identities = 10/72 (13%), Positives = 26/72 (36%)
Query: 571 MIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTLL 630
M V + VN + + R +R G+ GV + ++ + + + +
Sbjct: 73 MPEAVAFQFFDACVNHGYGNAARMLQRAAGVPDDGVIGAVSLKAINSLPENDLLLRFNAE 132
Query: 631 HVSYSVRLRAWR 642
+ + +L +
Sbjct: 133 RLVFYTKLGTFT 144
>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase
{Plasmodium falciparum [TaxId: 5833]}
Length = 259
Score = 28.9 bits (63), Expect = 1.9
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 232 LAVMGFGKVGSEVARRAKGLGMNV 255
L V+G G G ARRA V
Sbjct: 4 LIVIGGGSGGMAAARRAARHNAKV 27
>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase
{Salmonella typhimurium [TaxId: 90371]}
Length = 161
Score = 28.2 bits (62), Expect = 2.1
Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 232 LAVMGFGKVGSEVARRAKGLGMNVIAHD--PYAPADKARAVGVELVSFDQALATADFISL 289
+ +G G +G +++ G +++ D P A AD A + D I
Sbjct: 3 VGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIIT 62
Query: 290 HMPLNPTTSKIF--NDETFAKMKKGVRIVNVA 319
+P +P ++ + K G +++++
Sbjct: 63 MLPNSPHVKEVALGENGIIEGAKPGTVLIDMS 94
>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {South China Sea lobster
(Palinurus versicolor) [TaxId: 150436]}
Length = 169
Score = 28.0 bits (62), Expect = 2.2
Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 4/110 (3%)
Query: 232 LAVMGFGKVGSEVARRAKGLGMNVIA-HDPYAPADKARAVGVELVSFDQALATADFISLH 290
+ + GFG++G V R A +G V+A +DP+ + + +
Sbjct: 3 IGINGFGRIGRLVLRAALEMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGA 62
Query: 291 MPLNPTTSKIFND---ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGV 337
+ ++ +FN+ E K G + + G E G
Sbjct: 63 LVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGA 112
>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 406
Score = 28.9 bits (64), Expect = 2.2
Identities = 7/77 (9%), Positives = 20/77 (25%), Gaps = 3/77 (3%)
Query: 243 EVARRAK---GLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSK 299
++ + + V+ + + D I ++ L
Sbjct: 254 DLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLN 313
Query: 300 IFNDETFAKMKKGVRIV 316
++ K G +I+
Sbjct: 314 KKVEKILQTAKVGCKII 330
>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline
dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}
Length = 184
Score = 28.3 bits (62), Expect = 2.3
Identities = 27/174 (15%), Positives = 48/174 (27%)
Query: 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISL 289
KT AV+G G G A G +V+A D A K +++ LA L
Sbjct: 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDL 61
Query: 290 HMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEE 349
K + + I E L+ E
Sbjct: 62 LTSDIGLAVKDADVILIVVPAIHHASIAANIASYISEGQLIILNPGATGGALEFRKILRE 121
Query: 350 PPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINA 403
A + + + ++ T + + + A + A + + I +
Sbjct: 122 NGAPEVTIGETSSMLFTCRSERPGQVTVNAIKGAMDFACLPAAKAGWALEQIGS 175
>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 221
Score = 28.3 bits (62), Expect = 2.4
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 232 LAVMGFGKVGSEVARRAKGLGMNVI 256
+ ++G G G A +A LG
Sbjct: 6 VVIIGGGPGGYVAAIKAAQLGFKTT 30
>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase
{Trypanosoma cruzi [TaxId: 5693]}
Length = 238
Score = 28.1 bits (61), Expect = 2.8
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 232 LAVMGFGKVGSEVARRAKGLGMNVIA 257
L V+G G G E A A L +A
Sbjct: 6 LVVIGAGSGGLEAAWNAATLYKKRVA 31
>d1ztpa1 d.86.1.2 (A:17-250) Basophilic leukemia expressed protein
BLES03 {Human (Homo sapiens) [TaxId: 9606]}
Length = 234
Score = 27.9 bits (62), Expect = 3.3
Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Query: 406 VPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLD--TRILRAMI 463
P L + A GRL V VS + ++I D D A+
Sbjct: 118 APGFKLDHAWAGIARAVVEGRLQVAKVSPRAKEGGRQVICVYTDDFTDRLGVLEADSAIR 177
Query: 464 TKGIIEPIS 472
GI ++
Sbjct: 178 AAGIKCLLT 186
>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK
{Archaeon Methanothermobacter thermautotrophicus [TaxId:
145262]}
Length = 129
Score = 27.2 bits (59), Expect = 3.7
Identities = 19/109 (17%), Positives = 32/109 (29%), Gaps = 26/109 (23%)
Query: 234 VMGFGKVGSEVARRAKGLGMNVIAHDP-------------------------YAPADKAR 268
+ G+ + E R +G + V+A D A AR
Sbjct: 5 ICGWSESTLECLRELRGSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGAR 64
Query: 269 AVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKK-GVRIV 316
AV V L S + + I ++ E +++ G V
Sbjct: 65 AVIVNLESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGADQV 113
>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 27.5 bits (60), Expect = 4.1
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 232 LAVMGFGKVGSEVARRAKGLGMNVI 256
+ ++G G G A +A LG N
Sbjct: 8 VVIIGGGPAGYVAAIKAAQLGFNTA 32
>d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase
{Escherichia coli [TaxId: 562]}
Length = 284
Score = 26.9 bits (59), Expect = 7.1
Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 5/94 (5%)
Query: 189 AAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRA 248
A +G A+ A N A ++ +RS V ++ T + ++ + + +
Sbjct: 11 DAQANGYAVPAFNIHNAETIQAILEVCSEMRS-PVILAGTPGTFKHIALEEIYALCSAYS 69
Query: 249 KGLGMNVIAH----DPYAPADKARAVGVELVSFD 278
M + H + + GV D
Sbjct: 70 TTYNMPLALHLDHHESLDDIRRKVHAGVRSAMID 103
>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase
{Crithidia fasciculata [TaxId: 5656]}
Length = 240
Score = 26.8 bits (58), Expect = 7.4
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 232 LAVMGFGKVGSEVARRAKGLGMNVIA 257
L V+G G G E A L +A
Sbjct: 6 LVVIGAGSGGLEAGWNAASLHKKRVA 31
>d1uyja_ f.8.1.2 (A:) Epsilon-toxin, ETX {Clostridium perfringens
[TaxId: 1502]}
Length = 280
Score = 26.8 bits (59), Expect = 7.9
Identities = 14/97 (14%), Positives = 27/97 (27%), Gaps = 17/97 (17%)
Query: 476 INLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKF-------------A 522
IN DF + + E + + ++ + + K
Sbjct: 40 INPQGNDFYINNPKVELDGEPSMNYLEDVYVGKALLTNDTQQEQKLKSQSFTCKNTDTVT 99
Query: 523 AAVSENGEISIEGKVKFGIPHLTRVGSFGVDASLEGN 559
A + SI+ KF +P GV + +
Sbjct: 100 ATTTHTVGTSIQATAKFTVP----FNETGVSLTTSYS 132
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.131 0.362
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,222,175
Number of extensions: 103107
Number of successful extensions: 430
Number of sequences better than 10.0: 1
Number of HSP's gapped: 403
Number of HSP's successfully gapped: 76
Length of query: 656
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 565
Effective length of database: 1,158,166
Effective search space: 654363790
Effective search space used: 654363790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)