Query 006213
Match_columns 656
No_of_seqs 109 out of 123
Neff 3.9
Searched_HMMs 46136
Date Thu Mar 28 20:01:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006213.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006213hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04484 DUF566: Family of unk 100.0 6.3E-86 1.4E-90 683.3 31.9 307 292-619 1-311 (311)
2 PF10455 BAR_2: Bin/amphiphysi 92.9 4.3 9.2E-05 43.6 15.9 99 489-629 186-284 (289)
3 COG0497 RecN ATPase involved i 92.1 4.6 0.0001 46.9 15.9 79 456-542 130-215 (557)
4 PF15003 HAUS2: HAUS augmin-li 91.8 6.7 0.00015 42.0 15.6 142 485-632 44-194 (277)
5 cd07600 BAR_Gvp36 The Bin/Amph 91.3 8.8 0.00019 40.1 15.7 119 469-629 118-239 (242)
6 KOG0978 E3 ubiquitin ligase in 87.7 20 0.00043 42.9 16.6 157 484-640 366-545 (698)
7 TIGR01005 eps_transp_fam exopo 86.3 38 0.00082 40.0 18.1 73 469-543 171-248 (754)
8 KOG0933 Structural maintenance 86.2 54 0.0012 40.9 19.2 176 459-645 211-404 (1174)
9 PRK09841 cryptic autophosphory 83.6 55 0.0012 38.9 17.9 74 470-543 249-322 (726)
10 TIGR03017 EpsF chain length de 83.1 77 0.0017 34.7 18.1 143 470-614 153-301 (444)
11 PRK11519 tyrosine kinase; Prov 81.4 96 0.0021 36.9 18.7 72 471-542 250-321 (719)
12 cd07619 BAR_Rich2 The Bin/Amph 78.2 98 0.0021 32.9 17.5 132 460-628 83-224 (248)
13 TIGR03007 pepcterm_ChnLen poly 76.9 1.2E+02 0.0026 33.9 16.9 129 484-614 157-294 (498)
14 PRK11637 AmiB activator; Provi 76.9 1.3E+02 0.0028 33.5 19.6 52 480-531 81-133 (428)
15 KOG3091 Nuclear pore complex, 76.0 55 0.0012 37.9 13.8 146 434-593 330-488 (508)
16 PRK10869 recombination and rep 75.9 1.6E+02 0.0035 34.2 18.3 70 484-559 156-234 (553)
17 KOG1853 LIS1-interacting prote 74.7 1.3E+02 0.0028 32.5 17.4 90 446-542 6-101 (333)
18 TIGR00634 recN DNA repair prot 74.6 96 0.0021 35.8 15.7 77 482-559 158-238 (563)
19 cd07683 F-BAR_srGAP1 The F-BAR 73.4 1.4E+02 0.0029 32.1 15.1 112 520-633 10-138 (253)
20 cd07622 BAR_SNX4 The Bin/Amphi 72.9 1.1E+02 0.0025 31.0 15.8 88 520-610 47-134 (201)
21 KOG4514 Uncharacterized conser 68.9 45 0.00097 34.3 10.0 46 568-613 162-207 (222)
22 PRK14011 prefoldin subunit alp 68.3 12 0.00027 36.3 5.9 57 554-610 49-124 (144)
23 cd07684 F-BAR_srGAP3 The F-BAR 67.3 1.8E+02 0.004 31.2 15.6 112 520-633 10-137 (253)
24 cd07609 BAR_SIP3_fungi The Bin 64.4 1.8E+02 0.0039 30.1 13.8 103 523-628 5-122 (214)
25 cd07593 BAR_MUG137_fungi The B 60.4 1.9E+02 0.004 30.1 12.9 94 493-630 112-206 (215)
26 COG1196 Smc Chromosome segrega 59.8 4.6E+02 0.01 33.2 19.4 27 455-481 224-250 (1163)
27 KOG0933 Structural maintenance 59.4 1.3E+02 0.0028 37.8 13.1 125 487-648 398-534 (1174)
28 PF10157 DUF2365: Uncharacteri 58.8 88 0.0019 30.9 9.8 82 541-626 64-146 (149)
29 cd07908 Mn_catalase_like Manga 57.0 1.2E+02 0.0026 28.6 10.3 54 571-625 101-154 (154)
30 cd07682 F-BAR_srGAP2 The F-BAR 56.3 2.9E+02 0.0063 29.9 15.8 113 520-632 10-136 (263)
31 KOG0980 Actin-binding protein 54.6 5.3E+02 0.012 32.4 17.0 19 530-548 429-447 (980)
32 cd07617 BAR_Endophilin_B2 The 54.3 2.7E+02 0.0058 29.3 12.9 90 489-629 127-217 (220)
33 cd07594 BAR_Endophilin_B The B 54.1 2.8E+02 0.0061 29.0 15.7 96 492-629 130-226 (229)
34 PRK07191 flgK flagellar hook-a 52.6 2.5E+02 0.0054 31.8 13.4 109 457-565 61-191 (456)
35 cd07595 BAR_RhoGAP_Rich-like T 52.1 3.1E+02 0.0067 28.9 16.3 103 492-629 118-221 (244)
36 PLN03188 kinesin-12 family pro 51.5 3.1E+02 0.0068 35.5 14.9 52 494-545 1071-1127(1320)
37 cd01052 DPSL DPS-like protein, 51.1 1.2E+02 0.0027 27.9 9.1 96 530-625 43-148 (148)
38 KOG2685 Cystoskeletal protein 50.9 3.7E+02 0.008 30.9 14.1 60 569-628 103-165 (421)
39 PF10267 Tmemb_cc2: Predicted 50.6 1.5E+02 0.0032 33.6 11.1 69 563-631 272-353 (395)
40 cd07592 BAR_Endophilin_A The B 49.8 3.2E+02 0.007 28.4 15.6 89 491-629 124-213 (223)
41 cd07677 F-BAR_FCHSD2 The F-BAR 49.3 3.2E+02 0.007 29.4 12.8 103 526-628 5-122 (260)
42 cd07654 F-BAR_FCHSD The F-BAR 49.2 2.9E+02 0.0062 29.5 12.5 38 517-554 7-51 (264)
43 COG3206 GumC Uncharacterized p 49.0 4.3E+02 0.0093 29.6 18.5 171 471-645 178-361 (458)
44 PF07373 CAMP_factor: CAMP fac 48.9 2.9E+02 0.0064 29.3 12.2 83 550-632 55-145 (228)
45 COG5185 HEC1 Protein involved 48.8 3.7E+02 0.008 31.6 13.8 189 448-642 133-360 (622)
46 KOG3850 Predicted membrane pro 48.6 4.7E+02 0.01 30.0 15.1 102 519-633 268-370 (455)
47 KOG0517 Beta-spectrin [Cytoske 48.4 8.8E+02 0.019 33.3 18.0 76 543-639 571-647 (2473)
48 PF10234 Cluap1: Clusterin-ass 48.4 1.7E+02 0.0036 31.6 10.6 72 481-554 176-247 (267)
49 KOG3647 Predicted coiled-coil 47.1 4.3E+02 0.0092 29.1 13.5 98 485-630 123-221 (338)
50 PLN02939 transferase, transfer 47.0 4.5E+02 0.0097 33.3 15.1 153 472-632 149-337 (977)
51 PF08654 DASH_Dad2: DASH compl 45.5 76 0.0016 29.5 6.7 34 500-533 2-35 (103)
52 PRK10304 ferritin; Provisional 44.9 3.2E+02 0.0069 26.9 11.3 87 535-638 47-133 (165)
53 smart00055 FCH Fes/CIP4 homolo 43.6 2E+02 0.0044 24.3 8.7 56 527-589 28-83 (87)
54 PRK11637 AmiB activator; Provi 42.0 5.3E+02 0.012 28.7 19.3 37 482-518 90-126 (428)
55 cd07624 BAR_SNX7_30 The Bin/Am 40.7 3.9E+02 0.0085 26.8 15.7 82 529-612 56-137 (200)
56 PF00210 Ferritin: Ferritin-li 40.0 2.7E+02 0.0058 24.7 14.2 103 529-631 35-142 (142)
57 KOG2196 Nuclear porin [Nuclear 39.1 3.7E+02 0.008 28.9 11.2 155 454-632 72-229 (254)
58 PF05802 EspB: Enterobacterial 39.0 5.7E+02 0.012 28.2 17.7 47 567-613 154-200 (317)
59 PF06070 Herpes_UL32: Herpesvi 38.6 33 0.00072 41.8 4.0 82 468-554 153-236 (839)
60 cd07652 F-BAR_Rgd1 The F-BAR ( 37.4 4.9E+02 0.011 27.0 14.6 99 511-618 11-109 (234)
61 PF01865 PhoU_div: Protein of 36.8 2.1E+02 0.0045 28.4 8.8 92 531-626 46-138 (214)
62 PF08580 KAR9: Yeast cortical 36.4 1.7E+02 0.0036 35.3 9.3 19 516-534 5-23 (683)
63 PF00015 MCPsignal: Methyl-acc 35.5 3.4E+02 0.0074 26.0 9.9 56 567-622 114-169 (213)
64 cd07616 BAR_Endophilin_B1 The 35.1 5.6E+02 0.012 27.0 15.2 98 490-629 128-226 (229)
65 PF08424 NRDE-2: NRDE-2, neces 34.5 6.1E+02 0.013 27.2 12.8 138 480-632 41-178 (321)
66 KOG0249 LAR-interacting protei 34.4 7.7E+02 0.017 30.6 13.9 35 487-521 155-189 (916)
67 cd07678 F-BAR_FCHSD1 The F-BAR 34.4 5.9E+02 0.013 27.4 12.1 76 519-594 9-92 (263)
68 cd00187 TOP4c DNA Topoisomeras 34.2 3.9E+02 0.0084 30.7 11.3 45 492-537 319-363 (445)
69 PRK08871 flgK flagellar hook-a 34.1 5E+02 0.011 31.0 12.6 66 567-632 137-210 (626)
70 cd07613 BAR_Endophilin_A1 The 33.9 5.8E+02 0.013 26.8 11.7 39 587-629 174-213 (223)
71 TIGR01063 gyrA DNA gyrase, A s 33.8 2.6E+02 0.0057 34.1 10.5 41 489-530 338-378 (800)
72 cd07666 BAR_SNX7 The Bin/Amphi 33.7 6.1E+02 0.013 26.9 13.5 79 530-610 97-175 (243)
73 KOG0161 Myosin class II heavy 33.0 1.5E+03 0.032 31.2 20.4 98 525-632 1438-1539(1930)
74 PRK05685 fliS flagellar protei 32.8 2.5E+02 0.0055 26.6 8.2 63 567-629 49-118 (132)
75 COG1196 Smc Chromosome segrega 32.2 1.2E+03 0.025 29.8 20.9 32 486-517 693-724 (1163)
76 PF04156 IncA: IncA protein; 32.1 4.9E+02 0.011 25.4 16.7 62 577-638 126-187 (191)
77 PF07888 CALCOCO1: Calcium bin 32.0 9.4E+02 0.02 28.6 17.8 20 495-514 157-176 (546)
78 cd07640 BAR_ASAP3 The Bin/Amph 31.5 6.4E+02 0.014 26.6 12.9 143 497-650 4-180 (213)
79 PF08580 KAR9: Yeast cortical 31.2 1E+03 0.022 28.9 15.5 122 519-643 109-266 (683)
80 KOG1969 DNA replication checkp 31.0 1.2E+02 0.0026 37.2 6.8 143 465-611 510-704 (877)
81 PF14712 Snapin_Pallidin: Snap 31.0 3.3E+02 0.0071 23.7 8.1 52 580-631 6-57 (92)
82 PF13339 AATF-Che1: Apoptosis 30.9 2.9E+02 0.0062 25.8 8.2 29 477-505 49-77 (131)
83 PF06160 EzrA: Septation ring 30.9 9.2E+02 0.02 28.2 15.8 112 482-603 387-501 (560)
84 KOG0976 Rho/Rac1-interacting s 30.2 1.2E+03 0.026 29.4 17.6 80 547-632 393-472 (1265)
85 PF00015 MCPsignal: Methyl-acc 29.7 5.1E+02 0.011 24.8 18.6 48 493-540 21-68 (213)
86 KOG0239 Kinesin (KAR3 subfamil 29.7 1.1E+03 0.024 28.7 17.8 33 481-513 175-207 (670)
87 PRK01203 prefoldin subunit alp 29.6 85 0.0018 30.4 4.5 13 554-566 48-60 (130)
88 PF13779 DUF4175: Domain of un 29.1 1.2E+03 0.026 29.0 16.2 151 469-628 438-614 (820)
89 KOG1656 Protein involved in gl 28.9 7.2E+02 0.016 26.3 16.6 81 506-592 59-149 (221)
90 TIGR01843 type_I_hlyD type I s 28.8 5.1E+02 0.011 27.7 10.8 21 545-565 262-282 (423)
91 PF09726 Macoilin: Transmembra 28.7 1.1E+03 0.025 28.6 17.0 20 571-590 556-575 (697)
92 PF05130 FlgN: FlgN protein; 28.7 4.2E+02 0.0092 23.6 10.2 21 519-539 5-25 (143)
93 PF13514 AAA_27: AAA domain 28.3 1.3E+03 0.028 29.2 16.3 140 495-645 181-322 (1111)
94 PRK00846 hypothetical protein; 28.2 2.9E+02 0.0063 24.7 7.2 44 477-520 9-52 (77)
95 PRK06665 flgK flagellar hook-a 28.2 6.7E+02 0.014 29.9 12.3 65 568-632 147-222 (627)
96 PRK09631 DNA topoisomerase IV 27.4 4.8E+02 0.01 31.4 11.0 29 499-527 318-347 (635)
97 TIGR00996 Mtu_fam_mce virulenc 27.1 4.8E+02 0.01 27.1 9.9 30 571-600 231-260 (291)
98 PF02252 PA28_beta: Proteasome 26.9 3.6E+02 0.0079 26.6 8.4 57 569-631 15-71 (150)
99 cd07673 F-BAR_FCHO2 The F-BAR 26.4 7.9E+02 0.017 26.0 14.7 94 528-632 32-126 (269)
100 PRK02793 phi X174 lysis protei 26.2 3.1E+02 0.0068 23.8 7.0 42 479-520 6-47 (72)
101 KOG0964 Structural maintenance 25.9 1.5E+03 0.033 29.1 17.7 193 442-648 139-371 (1200)
102 PF04048 Sec8_exocyst: Sec8 ex 25.7 5.6E+02 0.012 24.5 9.3 86 532-627 11-104 (142)
103 PF15556 Zwint: ZW10 interacto 25.5 6.8E+02 0.015 26.5 10.3 39 594-632 154-192 (252)
104 PRK04863 mukB cell division pr 25.5 1.7E+03 0.037 29.6 19.9 38 479-516 291-328 (1486)
105 PRK12714 flgK flagellar hook-a 25.5 1.1E+03 0.024 28.0 13.5 100 458-557 62-183 (624)
106 PF15011 CK2S: Casein Kinase 2 25.5 6.8E+02 0.015 24.9 12.6 111 532-645 15-152 (168)
107 PRK06945 flgK flagellar hook-a 25.1 1.2E+03 0.025 28.2 13.6 59 458-516 63-139 (651)
108 TIGR01061 parC_Gpos DNA topois 25.1 4.7E+02 0.01 31.8 10.6 43 491-534 340-382 (738)
109 KOG0989 Replication factor C, 24.9 7.1E+02 0.015 28.0 10.9 105 539-644 218-336 (346)
110 PF04849 HAP1_N: HAP1 N-termin 24.9 9.7E+02 0.021 26.5 16.0 76 569-644 205-280 (306)
111 TIGR00293 prefoldin, archaeal 24.9 5.4E+02 0.012 23.6 9.9 57 554-610 47-122 (126)
112 PF00901 Orbi_VP5: Orbivirus o 24.6 1.2E+03 0.026 27.5 13.9 137 452-589 99-259 (508)
113 PRK06945 flgK flagellar hook-a 24.4 1E+03 0.022 28.6 13.0 90 542-632 107-212 (651)
114 PHA03332 membrane glycoprotein 24.4 1.4E+03 0.031 29.6 14.2 68 542-609 866-944 (1328)
115 PRK06665 flgK flagellar hook-a 24.4 8.3E+02 0.018 29.1 12.2 107 457-563 72-201 (627)
116 cd07615 BAR_Endophilin_A3 The 24.2 8.5E+02 0.018 25.6 13.5 57 573-629 156-213 (223)
117 smart00503 SynN Syntaxin N-ter 24.1 5E+02 0.011 22.9 9.4 81 453-533 22-115 (117)
118 PRK12714 flgK flagellar hook-a 24.0 1.1E+03 0.023 28.2 13.0 65 568-632 135-208 (624)
119 PRK08471 flgK flagellar hook-a 23.6 9E+02 0.02 28.8 12.3 65 568-632 140-217 (613)
120 PRK02224 chromosome segregatio 23.3 1.4E+03 0.03 27.7 20.0 44 554-600 451-494 (880)
121 TIGR01000 bacteriocin_acc bact 23.3 6.6E+02 0.014 28.2 10.7 78 489-566 237-328 (457)
122 KOG2911 Uncharacterized conser 23.1 1.2E+03 0.025 27.2 12.4 19 570-588 313-331 (439)
123 PF06548 Kinesin-related: Kine 23.0 1.3E+03 0.027 27.2 14.9 51 494-544 293-356 (488)
124 PRK07739 flgK flagellar hook-a 23.0 1.2E+03 0.026 27.0 12.8 124 461-611 76-222 (507)
125 PRK04406 hypothetical protein; 23.0 4.4E+02 0.0096 23.1 7.4 44 478-521 8-51 (75)
126 PF10186 Atg14: UV radiation r 22.7 8.3E+02 0.018 24.9 15.3 125 500-645 18-152 (302)
127 KOG3119 Basic region leucine z 22.6 4.4E+02 0.0095 28.1 8.7 71 443-525 182-253 (269)
128 COG1463 Ttg2C ABC-type transpo 22.6 6.4E+02 0.014 27.6 10.2 55 575-629 240-295 (359)
129 PRK10476 multidrug resistance 22.5 9.6E+02 0.021 25.6 11.9 18 546-563 200-217 (346)
130 cd01056 Euk_Ferritin eukaryoti 22.3 7E+02 0.015 23.9 13.0 96 535-631 47-146 (161)
131 PRK05683 flgK flagellar hook-a 22.2 9.5E+02 0.021 29.1 12.2 66 567-632 134-210 (676)
132 PF03564 DUF1759: Protein of u 22.0 2.3E+02 0.005 26.2 5.9 64 527-591 53-117 (145)
133 PRK12758 DNA topoisomerase IV 21.8 1.3E+03 0.028 29.1 13.2 32 491-522 331-362 (869)
134 PF00611 FCH: Fes/CIP4, and EF 21.8 4.8E+02 0.01 21.8 9.7 68 512-589 16-83 (91)
135 PF07412 Geminin: Geminin; In 21.6 2.2E+02 0.0047 29.6 6.0 46 488-533 118-163 (200)
136 KOG4673 Transcription factor T 21.6 1.6E+03 0.035 27.9 16.7 158 478-635 478-685 (961)
137 KOG4302 Microtubule-associated 21.6 6.7E+02 0.015 30.5 10.7 64 490-560 23-92 (660)
138 PRK12715 flgK flagellar hook-a 21.3 1.2E+03 0.026 28.1 12.7 66 567-632 134-206 (649)
139 PF09726 Macoilin: Transmembra 21.3 1.5E+03 0.033 27.5 18.5 64 570-633 537-601 (697)
140 KOG0996 Structural maintenance 21.0 2E+03 0.043 28.7 19.1 60 458-517 379-448 (1293)
141 PF05769 DUF837: Protein of un 20.7 8.9E+02 0.019 24.5 13.9 96 532-642 81-176 (181)
142 KOG2001 Gamma-tubulin complex, 20.2 1.7E+03 0.036 27.5 14.6 54 485-542 542-606 (734)
143 PRK00888 ftsB cell division pr 20.1 2.9E+02 0.0062 25.5 5.9 24 495-518 27-50 (105)
144 PF14931 IFT20: Intraflagellar 20.1 6E+02 0.013 24.3 8.2 36 498-533 83-119 (120)
145 KOG2273 Membrane coat complex 20.1 1.3E+03 0.028 26.2 16.0 75 513-591 300-380 (503)
No 1
>PF04484 DUF566: Family of unknown function (DUF566) ; InterPro: IPR007573 This is a family of related proteins that is plant specific.
Probab=100.00 E-value=6.3e-86 Score=683.32 Aligned_cols=307 Identities=54% Similarity=0.741 Sum_probs=255.5
Q ss_pred cccccCCCcccccccCccccCCCCCCcccccccccccc-ccccccCCCCCCCCccCCCCcccCCCcccCCcccccCCCCC
Q 006213 292 ESVSSGSTSEAHERNGVGIVNPRGPRGIVVPARFWHET-SNRLRQQADPSTPVSKTNGLKIACTPKLIVPKKFGFDSPAS 370 (656)
Q Consensus 292 esvsSgsss~~~~~~~~~~~~~~~~rg~~vpARf~q~~-~sRlrrl~~pgs~~~~~~~~~~~~~~~~~~~kk~~~~~~~s 370 (656)
|||+||+++|.++.+. +.++|....+ |||+++ ++|++++++|+++.+..++.+...+.. .+.....+.+
T Consensus 1 ~svsS~sts~~~~~~~-----~~s~r~~~~~-r~~~~~~~sr~~~~~~~~s~~~s~~~~~~~s~s~----~~~~~~~~~s 70 (311)
T PF04484_consen 1 DSVSSGSTSGSQSPPR-----RVSRRRLSSS-RFWQESTRSRSRRLSDPSSPRSSSPSSPTSSSSS----NSSSRSNSKS 70 (311)
T ss_pred CCcCCCCCCCCCCCCC-----CCCCCCCCCc-cccccccCCcccccCCCCCCCCCCCCccccCCCc----cccccccccc
Confidence 6899999999887631 2223333344 999997 999999999999987776655433332 1122222222
Q ss_pred CCCccccCCCCCCCCcCC--CCCCCCCcccccCCCCCCCCC-CCCccccCcCCCCcccccccCCCCccccchhccccccc
Q 006213 371 SPKGVVNTRGLSSPLRSA--ARPASPSKLVTSAGSSPVRGL-SPSRVRNTAMGMNSSNLISVSNAPSVMSYAVDVRRGKV 447 (656)
Q Consensus 371 sp~~~~~~r~~~Sp~r~~--~rp~SPsk~~~~s~~sp~R~~-~PsR~r~~~~~~~s~~~~~~~~~~sils~~~D~rkgKk 447 (656)
.+.+. .++++.||.|+. ..+.+|+++.+.+ .+.. +|+|.|++++.. ++++.++|++|++|++||||
T Consensus 71 ~~~~~-~ss~~~Sp~r~~~~~~~~~~~~~~~~s----~~~~~sPsr~r~~~~~~------~~~~~~si~s~~~d~~rgkk 139 (311)
T PF04484_consen 71 LPGGS-LSSWALSPSRSSSSSSPSSPSSLSTSS----SSPSSSPSRSRRSTSSG------QSNSGPSILSFAADVRRGKK 139 (311)
T ss_pred ccCCc-CCcCCCCCCCCCCCCCCCCCCccccCC----CCCCCCCCCCCCCCCcc------cCCCCccccccccccccccc
Confidence 22223 234455777742 2334444444321 1222 699999765322 45788999999999999999
Q ss_pred CCccchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHh
Q 006213 448 GENRVVDAHLLRLFHNRLLQWRFVNARANAALSAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQ 527 (656)
Q Consensus 448 ~~~~~Ed~HqLRLLhNRlLQWRFaNARAeaa~~~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Q 527 (656)
+++|+||+|||||||||||||||||||||+++++|+++||++||++|++|++||++|++||||||++||++||++||++|
T Consensus 140 ~~~~~Ed~H~LRLLhNR~LQWRFaNArAeaa~~~q~~~aE~~L~~~w~~is~Lr~sV~~KRi~lq~~kq~~KL~~IL~~Q 219 (311)
T PF04484_consen 140 GASQIEDAHQLRLLHNRLLQWRFANARAEAALSAQKANAEKKLYNAWLRISELRDSVAMKRIELQRLKQELKLNSILKSQ 219 (311)
T ss_pred CcchhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHhhhhhhhhhHHHHHHHHHhccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 006213 528 MTFLEESALMDRDYSSSLLGAIEALRASTLRLPVVGGARADFQNVKDAISSAVDVMQAMASSICLLLSKAGEVNSLVSEL 607 (656)
Q Consensus 528 m~~LE~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~LvsEL 607 (656)
|+|||+|+.||++|+++|++++|||+|++|||||++|||+|+++|++||++||||||+|+++||+|+||||+|++||+||
T Consensus 220 ~~~Le~W~~le~~h~~sl~~~~~aL~a~~lrlP~~~ga~~d~~~l~~al~sAvdvm~~i~ssi~~l~pk~e~~~~l~seL 299 (311)
T PF04484_consen 220 MPYLEEWAALEREHSSSLSGATEALKASTLRLPVTGGAKADVQSLKEALSSAVDVMQAIESSICSLLPKVEETSSLVSEL 299 (311)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCceecHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 006213 608 SNVSAKEHALLG 619 (656)
Q Consensus 608 A~Va~qE~~lLe 619 (656)
|+|++||++|||
T Consensus 300 a~v~~~E~~ll~ 311 (311)
T PF04484_consen 300 ARVAAQERALLE 311 (311)
T ss_pred HHHHHHHHHhcC
Confidence 999999999986
No 2
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=92.91 E-value=4.3 Score=43.62 Aligned_cols=99 Identities=18% Similarity=0.225 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhhhhHHHHhhhhhhhhhHHHHHHHHHhccccccccCCcccc
Q 006213 489 SLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQMTFLEESALMDRDYSSSLLGAIEALRASTLRLPVVGGARAD 568 (656)
Q Consensus 489 ~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LE~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD 568 (656)
.|-.-...+.++|+.|..+|+++..+|.++|.. .-+-.+ ..+...+|.++-
T Consensus 186 ~Ln~~~~~a~k~RkkV~~sRL~~D~~R~~~k~~-----~~peke----------e~~r~~lE~aED-------------- 236 (289)
T PF10455_consen 186 TLNTDFKKANKARKKVENSRLQFDAARANLKNK-----AKPEKE----------EQLRVELEQAED-------------- 236 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----CCcccC----------HHHHHHHHHHHH--------------
Confidence 344444567889999999999999999998874 000000 011112222211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006213 569 FQNVKDAISSAVDVMQAMASSICLLLSKAGEVNSLVSELSNVSAKEHALLGQCKDLLSTIA 629 (656)
Q Consensus 569 ~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~LvsELA~Va~qE~~lLeEC~eLL~~va 629 (656)
++..+...||.+|+.|. +-...+..|...+.-..+..+.|-++|..+.
T Consensus 237 --eFv~aTeeAv~~Mk~vl-----------~~~e~l~~Lk~lv~AQl~Yhk~aae~L~~~~ 284 (289)
T PF10455_consen 237 --EFVSATEEAVEVMKEVL-----------DNSEPLRLLKELVKAQLEYHKKAAEALSELL 284 (289)
T ss_pred --HHHHHHHHHHHHHHHHh-----------cCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777777765 4556678888888899999999999998764
No 3
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=92.07 E-value=4.6 Score=46.87 Aligned_cols=79 Identities=24% Similarity=0.283 Sum_probs=43.7
Q ss_pred hhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhhhh----
Q 006213 456 HLLRLFHNRLLQWRFVNARANAALSAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQMTFL---- 531 (656)
Q Consensus 456 HqLRLLhNRlLQWRFaNARAeaa~~~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~L---- 531 (656)
|.=..|-+--.|-.+..+.+......+ .+-...|..|..+.+-..-...+.-+++ .....|.-|+.-|
T Consensus 130 h~~q~Ll~~~~~r~lLD~f~~~~~~~~--~~~~~~y~~w~~~~~~l~~~~~~~~e~~------~~~d~L~fq~~Ele~~~ 201 (557)
T COG0497 130 HEHQSLLKPELQRQLLDAFAGLEELAQ--EAYQEAYQAWKQARRELEDLQEKERERA------QRADLLQFQLEELEELN 201 (557)
T ss_pred chHHHhcChHHHHHHHHHhcCchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhcC
Confidence 333344444445555555555555444 4457789999887654443333322221 2345566666655
Q ss_pred ---HHHHhhhhhhh
Q 006213 532 ---EESALMDRDYS 542 (656)
Q Consensus 532 ---E~W~~LE~ehs 542 (656)
.+|..|+.+|.
T Consensus 202 l~~gE~e~L~~e~~ 215 (557)
T COG0497 202 LQPGEDEELEEERK 215 (557)
T ss_pred CCCchHHHHHHHHH
Confidence 47888888773
No 4
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=91.84 E-value=6.7 Score=41.98 Aligned_cols=142 Identities=16% Similarity=0.237 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhhhhHHHHhhhh---hhhhhHHHHHHHHHh----cc-
Q 006213 485 NAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQMTFLEESALMDR---DYSSSLLGAIEALRA----ST- 556 (656)
Q Consensus 485 ~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LE~W~~LE~---ehsssLs~a~eAL~A----at- 556 (656)
..+.+||..-..|..|+..+.++.+|+|+++.+..-.+|++. .||++=...=. .|..++..=.+.|.+ -.
T Consensus 44 ~~s~~l~s~L~QIt~iQaeI~q~nlEielLkleKeTADltH~--~~L~~K~~~Lq~m~shLe~VLk~K~~Lr~RLqkP~~ 121 (277)
T PF15003_consen 44 EKSSDLFSRLRQITNIQAEIDQLNLEIELLKLEKETADLTHP--DYLAEKCEALQSMNSHLEAVLKEKDRLRQRLQKPYC 121 (277)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHhhhCH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Confidence 456678999999999999999999999999999998887653 44433322222 222232222222222 11
Q ss_pred -ccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006213 557 -LRLPVVGGARADFQNVKDAISSAVDVMQAMASSICLLLSKAGEVNSLVSELSNVSAKEHALLGQCKDLLSTIAAMQ 632 (656)
Q Consensus 557 -lRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~LvsELA~Va~qE~~lLeEC~eLL~~va~Lq 632 (656)
-.|||..-..- .+.+-|..|+.-|+.+...+..+-- .-.+..-+..+..+.++=-.+|-||++|...+..+.
T Consensus 122 qe~LPVEA~yHr---~vVeLL~laa~fi~~Le~~LetIrw-ip~~~~~~~~m~~aL~ki~~lvae~E~l~e~ilkwR 194 (277)
T PF15003_consen 122 QENLPVEAQYHR---YVVELLELAASFIEKLEEHLETIRW-IPNFDENPSNMDKALAKIDALVAECEELAEQILKWR 194 (277)
T ss_pred hcCccchhhhhH---HHHHHHHHHHHHHHHHHHHHHHHhc-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23555322222 2333333444444444443332110 001233346666666777788999999999888875
No 5
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=91.32 E-value=8.8 Score=40.14 Aligned_cols=119 Identities=18% Similarity=0.243 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhhhhHHHHhhhhhhhhhH
Q 006213 469 RFVNARANAALSAQRL---NAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQMTFLEESALMDRDYSSSL 545 (656)
Q Consensus 469 RFaNARAeaa~~~q~~---~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LE~W~~LE~ehsssL 545 (656)
+.++||-+--...+.. --+..|..-|..|.+.|+.|..+|+.+...|.++|-..--..+-.+=++-...|.++..
T Consensus 118 kIa~ar~~~D~~I~~~Fl~pL~~~L~~d~k~i~k~RKkle~~RLd~D~~K~~~~ka~~~~k~~~~~~e~E~aEdef~~-- 195 (242)
T cd07600 118 KIAEARLEQDQLIQKEFNAKLRETLNTSFQKAHKARKKVEDKRLQLDTARAELKSAEPAEKQEAARVEVETAEDEFVS-- 195 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHH--
Confidence 5555555544444432 23456667888999999999999999999988764321000000011111122222221
Q ss_pred HHHHHHHHhccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006213 546 LGAIEALRASTLRLPVVGGARADFQNVKDAISSAVDVMQAMASSICLLLSKAGEVNSLVSELSNVSAKEHALLGQCKDLL 625 (656)
Q Consensus 546 s~a~eAL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~LvsELA~Va~qE~~lLeEC~eLL 625 (656)
+-..|+.+|+.|... ...+..|...+.-+....++|-++|
T Consensus 196 -----------------------------a~E~a~~~M~~il~~-----------~e~i~~L~~fv~AQl~Yh~~~~e~L 235 (242)
T cd07600 196 -----------------------------ATEEAVELMKEVLDN-----------PEPLQLLKELVKAQLAYHKTAAELL 235 (242)
T ss_pred -----------------------------hHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223455566655333 2368889999999999999999999
Q ss_pred HHHH
Q 006213 626 STIA 629 (656)
Q Consensus 626 ~~va 629 (656)
..+.
T Consensus 236 ~~l~ 239 (242)
T cd07600 236 EELL 239 (242)
T ss_pred HHHh
Confidence 8764
No 6
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=87.74 E-value=20 Score=42.91 Aligned_cols=157 Identities=15% Similarity=0.137 Sum_probs=102.1
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhHHHHH-HH--------HHHhHHHHHHHHhhh--hhHHHHh---hhhhhhhhHHHH
Q 006213 484 LNAERSLYN-AWIASSRLRESVRTKRTELQ-LL--------KQNLKLTSILKSQMT--FLEESAL---MDRDYSSSLLGA 548 (656)
Q Consensus 484 ~~AE~~Ly~-~W~~is~LR~sVa~KRieLq-~l--------kq~~KL~~IL~~Qm~--~LE~W~~---LE~ehsssLs~a 548 (656)
..++..|+. +|..+..|...--..+.+|| ++ ++.+++...-..-+. -++.|.. ....++..|...
T Consensus 366 ~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~ 445 (698)
T KOG0978|consen 366 LVAKSELLKTNELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKK 445 (698)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHH
Confidence 345566666 89888877665555555555 22 333345444444454 6788877 778888999999
Q ss_pred HHHHHhccccccccCCcccchHH--------HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006213 549 IEALRASTLRLPVVGGARADFQN--------VKDAISSAVDVMQAMASSICLLLSKAGEVNSLVSELSNVSAKEHALLGQ 620 (656)
Q Consensus 549 ~eAL~AatlRLPv~~GAkaD~~s--------lk~AL~sAvdvMq~i~ssi~~llpKvee~~~LvsELA~Va~qE~~lLeE 620 (656)
.+...+..-.++++|+|.-|+|+ +.++-.-...+|-+-..+-..+----++...|-.++..+..+...+...
T Consensus 446 ~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~ 525 (698)
T KOG0978|consen 446 EKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELK 525 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988764 4556666777887666544443333445555555666666666666665
Q ss_pred HHHHHHHHHHhHHhhhhhhh
Q 006213 621 CKDLLSTIAAMQVKECSLRT 640 (656)
Q Consensus 621 C~eLL~~va~LqVeE~SLR~ 640 (656)
-+.|=-....|+-.+..|-.
T Consensus 526 i~~leeq~~~lt~~~~~l~~ 545 (698)
T KOG0978|consen 526 IGKLEEQERGLTSNESKLIK 545 (698)
T ss_pred HHHHHHHHHHhhHhhhhhHH
Confidence 55555555566644444433
No 7
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=86.25 E-value=38 Score=40.02 Aligned_cols=73 Identities=15% Similarity=0.093 Sum_probs=49.8
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhhhh-HHHHhhhhhhhh
Q 006213 469 RFVNARANAAL----SAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQMTFL-EESALMDRDYSS 543 (656)
Q Consensus 469 RFaNARAeaa~----~~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~L-E~W~~LE~ehss 543 (656)
+++|+-+++=+ ..+...+.+.+-++..++.+|++.+.....+|+..|++.++... . ...+. ++...|+.+...
T Consensus 171 ~iaN~la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~-~-~~~~~~~~L~~l~~ql~~ 248 (754)
T TIGR01005 171 AIPDAIAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMG-N-NATLATQQLAELNTELSR 248 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc-C-CccchHHHHHHHHHHHHH
Confidence 45555555544 34455667778888999999999999999999999999887542 1 11222 455555555443
No 8
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.20 E-value=54 Score=40.89 Aligned_cols=176 Identities=14% Similarity=0.219 Sum_probs=114.4
Q ss_pred hhhhcchhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhhhhHHH
Q 006213 459 RLFHNRLLQWRFVNARANA----ALSAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQMTFLEES 534 (656)
Q Consensus 459 RLLhNRlLQWRFaNARAea----a~~~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LE~W 534 (656)
|==--+||+|+-+|+--|- ..+.+..++|...-.+-+.|.++.+.++..--++++..++++ .|+.++.-+++=
T Consensus 211 R~Ers~~lE~q~~~~dle~l~R~~ia~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~---~le~~ikei~~~ 287 (1174)
T KOG0933|consen 211 REERSQYLEYQKINRDLERLSRICIAYEYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIE---SLEKEIKEIEQQ 287 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHH
Confidence 3344679999988876654 466788888888888888899988888877666666555543 566777766542
Q ss_pred Hhhhhhhh---hhHHHHHHHHHhccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH-------H
Q 006213 535 ALMDRDYS---SSLLGAIEALRASTLRLPVVGGARADFQNVKDAISSAVDVMQAMASSICLLLSKAGEVNSL-------V 604 (656)
Q Consensus 535 ~~LE~ehs---ssLs~a~eAL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~L-------v 604 (656)
-|.+|. .+|+.....+.+...|. ..++...++.|..--.-.+.|..+|..+--++.+-..- .
T Consensus 288 --rd~em~~~~~~L~~~~~~~~~~~tr~------~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~ 359 (1174)
T KOG0933|consen 288 --RDAEMGGEVKALEDKLDSLQNEITRE------ETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGY 359 (1174)
T ss_pred --HHHHhchhhhhHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhH
Confidence 223332 34555555555555543 33455566666666666666776666655554443333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH----Hhhhhhhhhhhhc
Q 006213 605 SELSNVSAKEHALLGQCKDLLSTIAAMQ----VKECSLRTHILQS 645 (656)
Q Consensus 605 sELA~Va~qE~~lLeEC~eLL~~va~Lq----VeE~SLR~~lIQ~ 645 (656)
..|.+-...-..+|++|++++..+.+.- -+|.+|-.||+-.
T Consensus 360 ~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~a 404 (1174)
T KOG0933|consen 360 EKLKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDA 404 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHHHHHHHH
Confidence 3366666777789999999999888763 2566666666544
No 9
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=83.56 E-value=55 Score=38.90 Aligned_cols=74 Identities=14% Similarity=0.136 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhhhhHHHHhhhhhhhh
Q 006213 470 FVNARANAALSAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQMTFLEESALMDRDYSS 543 (656)
Q Consensus 470 FaNARAeaa~~~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LE~W~~LE~ehss 543 (656)
|+++.-+..+..+...+++.+=++..++.+|++.+....-+|+..|++.++..+-.....+|++-..||.+...
T Consensus 249 la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~ 322 (726)
T PRK09841 249 IANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNE 322 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45556666777788889999999999999999999999999999999988776544445567777777777654
No 10
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=83.10 E-value=77 Score=34.72 Aligned_cols=143 Identities=15% Similarity=0.146 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhhh-hHHHHhhhhhhhhhHHHH
Q 006213 470 FVNARANAALSAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQMTF-LEESALMDRDYSSSLLGA 548 (656)
Q Consensus 470 FaNARAeaa~~~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~-LE~W~~LE~ehsssLs~a 548 (656)
|+++.-+..+..+...+++.+=.+...+.++++.+....-+|+..|++.++..+ ..|..+ .++...|+.+...+-...
T Consensus 153 ~~~~y~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~-~~~~~~~~~~l~~l~~~l~~~~~~~ 231 (444)
T TIGR03017 153 FAQAYIDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSS-DERLDVERARLNELSAQLVAAQAQV 231 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc-CcccchHHHHHHHHHHHHHHHHHHH
Confidence 445555556666777788888889999999999999999999999999887653 222222 123334433333222222
Q ss_pred HHHHH---hc--cccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 006213 549 IEALR---AS--TLRLPVVGGARADFQNVKDAISSAVDVMQAMASSICLLLSKAGEVNSLVSELSNVSAKE 614 (656)
Q Consensus 549 ~eAL~---Aa--tlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~LvsELA~Va~qE 614 (656)
.++.. .. ..-+|-. ..-..++.++.-|.....-+.++......-.|+|.++...+.+|-+-..+|
T Consensus 232 ~~~~~~~~~~~~~~~~~~~-~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e 301 (444)
T TIGR03017 232 MDASSKEGGSSGKDALPEV-IANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAE 301 (444)
T ss_pred HHHHHHHhccCCcccchhh-hcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 11110 00 0001211 011223456666666666666666666667777777776666665555444
No 11
>PRK11519 tyrosine kinase; Provisional
Probab=81.42 E-value=96 Score=36.94 Aligned_cols=72 Identities=11% Similarity=0.120 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhhhhHHHHhhhhhhh
Q 006213 471 VNARANAALSAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQMTFLEESALMDRDYS 542 (656)
Q Consensus 471 aNARAeaa~~~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LE~W~~LE~ehs 542 (656)
+++.-+..+..+...+++.+=++..++.+++..+....-+|+..|++.++..+-..-...|+.-..++.+..
T Consensus 250 ~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~ 321 (719)
T PRK11519 250 TRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLN 321 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHH
Confidence 455555566667778889999999999999999999999999999998876644333345666666666554
No 12
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=78.24 E-value=98 Score=32.87 Aligned_cols=132 Identities=10% Similarity=0.063 Sum_probs=79.1
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhhhhHHHHh
Q 006213 460 LFHNRLLQWRFVNARANAALSAQRLNAE--R-SLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQMTFLEESAL 536 (656)
Q Consensus 460 LLhNRlLQWRFaNARAeaa~~~q~~~AE--~-~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LE~W~~ 536 (656)
|..+=..|=+.++++.+--+.++..--. + .|=.-|..|.+-|+.|..+|+.+...|..+|=
T Consensus 83 L~~~gea~~kla~a~~~~d~~i~~~fl~PL~~~le~dlk~I~k~RK~Le~~RLD~D~~K~r~~~---------------- 146 (248)
T cd07619 83 LKLCGETEDKLAQELILFELQIERDVVEPLYVLAEVEIPNIQKQRKHLAKLVLDMDSSRTRWQQ---------------- 146 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhHHHHHHHHHh----------------
Confidence 3334444555566655544433332111 1 11124556777788888888888777765541
Q ss_pred hhhhhhhhHHHHHHHHHhcccccccc---CCcccchHHHHHHHHHHHHHHH----HHHHHHHHhhhhhhhHHHHHHHHHH
Q 006213 537 MDRDYSSSLLGAIEALRASTLRLPVV---GGARADFQNVKDAISSAVDVMQ----AMASSICLLLSKAGEVNSLVSELSN 609 (656)
Q Consensus 537 LE~ehsssLs~a~eAL~AatlRLPv~---~GAkaD~~slk~AL~sAvdvMq----~i~ssi~~llpKvee~~~LvsELA~ 609 (656)
++-..+-. ++-++..++|++++..|.|-|+ .....+.+||.++.+....+.+|
T Consensus 147 ------------------a~~~~~~~~~~~~~~~k~e~lr~e~E~ae~~~e~~kd~~~~~m~~~l~~e~e~~~~l~~L-- 206 (248)
T cd07619 147 ------------------SSKSSGLSSNLQPTGAKADALREEMEEAANRMEICRDQLSADMYSFVAKEIDYANYFQTL-- 206 (248)
T ss_pred ------------------ccccccccccccCCCCccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH--
Confidence 11111100 1123445799999999999999 45999999999999987775544
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006213 610 VSAKEHALLGQCKDLLSTI 628 (656)
Q Consensus 610 Va~qE~~lLeEC~eLL~~v 628 (656)
+.--.....++-++|..+
T Consensus 207 -v~AQleYHr~A~eiLe~l 224 (248)
T cd07619 207 -IEVQAEYHRKSLELLQSV 224 (248)
T ss_pred -HHHHHHHHHHHHHHHHHH
Confidence 444556666666666544
No 13
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=76.94 E-value=1.2e+02 Score=33.95 Aligned_cols=129 Identities=12% Similarity=0.094 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhh-hhHHHHhhhhhhhhh------HHHHHHHHHhcc
Q 006213 484 LNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQMT-FLEESALMDRDYSSS------LLGAIEALRAST 556 (656)
Q Consensus 484 ~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~-~LE~W~~LE~ehsss------Ls~a~eAL~Aat 556 (656)
..++..+=.+...+.++++.+....-+|+..|++..+. +..|.. +.++-..++.++... +....+.|++..
T Consensus 157 ~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~--~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l 234 (498)
T TIGR03007 157 QDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGI--LPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQL 234 (498)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc--CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556777888899999999999999888877653 222222 334445554444322 222222333211
Q ss_pred ccc-cccC-CcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 006213 557 LRL-PVVG-GARADFQNVKDAISSAVDVMQAMASSICLLLSKAGEVNSLVSELSNVSAKE 614 (656)
Q Consensus 557 lRL-Pv~~-GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~LvsELA~Va~qE 614 (656)
-.. |... +...+.+.+..-|.....-+..+......-.|+|.++...+.+|-.-..+|
T Consensus 235 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~ 294 (498)
T TIGR03007 235 GGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEE 294 (498)
T ss_pred ccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhh
Confidence 110 1110 011223344444444444444444333344466666555555554444443
No 14
>PRK11637 AmiB activator; Provisional
Probab=76.90 E-value=1.3e+02 Score=33.47 Aligned_cols=52 Identities=15% Similarity=0.161 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhH-HHHHHHHhhhhh
Q 006213 480 SAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLK-LTSILKSQMTFL 531 (656)
Q Consensus 480 ~~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~K-L~~IL~~Qm~~L 531 (656)
..+...++..|-.....|.++...+....-++..++.+++ +...|..++.++
T Consensus 81 ~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~ 133 (428)
T PRK11637 81 EEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAA 133 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555666666666666666555555555533 444444444433
No 15
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.97 E-value=55 Score=37.90 Aligned_cols=146 Identities=18% Similarity=0.152 Sum_probs=83.2
Q ss_pred ccccchh-cccccccCCccchhhhhhhhhh--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--
Q 006213 434 SVMSYAV-DVRRGKVGENRVVDAHLLRLFH--NRLLQWRFVNARANAALSAQRLNAERSLYNAWIASSRLRESVRTKR-- 508 (656)
Q Consensus 434 sils~~~-D~rkgKk~~~~~Ed~HqLRLLh--NRlLQWRFaNARAeaa~~~q~~~AE~~Ly~~W~~is~LR~sVa~KR-- 508 (656)
+|+-++. |+++.-|.-.++-+.|++||=+ +++=+ ++ +-++...++.+++.+.+..+-+||.++=-.+.-.|
T Consensus 330 PVpvvGF~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~e---Lq-k~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~ 405 (508)
T KOG3091|consen 330 PVPVVGFEDLRQRLKVQDQEVKQHRIRINAIGERVTE---LQ-KHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKR 405 (508)
T ss_pred ceeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455555 8998889888888889888743 33322 22 55566666777888888888888887744433322
Q ss_pred ---HHHHHHHHHhHHHHHHHHhhhhhHHHHhhhhhhhhhHHHHHHHHHh--ccccccccCCcccchHH---HHHHHHHHH
Q 006213 509 ---TELQLLKQNLKLTSILKSQMTFLEESALMDRDYSSSLLGAIEALRA--STLRLPVVGGARADFQN---VKDAISSAV 580 (656)
Q Consensus 509 ---ieLq~lkq~~KL~~IL~~Qm~~LE~W~~LE~ehsssLs~a~eAL~A--atlRLPv~~GAkaD~~s---lk~AL~sAv 580 (656)
|.-...+...||+.||..=-..=|-|+-|. ++.|-+++ .-++++.. -.+|.+. +++-|..=.
T Consensus 406 G~~L~~~EE~Lr~Kldtll~~ln~Pnq~k~Rl~--------~L~e~~r~q~~~~~~~~~--~~iD~~~~~e~~e~lt~~~ 475 (508)
T KOG3091|consen 406 GYALTPDEEELRAKLDTLLAQLNAPNQLKARLD--------ELYEILRMQNSQLKLQES--YWIDFDKLIEMKEHLTQEQ 475 (508)
T ss_pred CCcCCccHHHHHHHHHHHHHHhcChHHHHHHHH--------HHHHHHHhhcchhccccc--eeechhhhHHHHHHHHHHH
Confidence 334455666778877754333445565544 33333333 35666553 3345443 444444444
Q ss_pred HHHHHHHHHHHHh
Q 006213 581 DVMQAMASSICLL 593 (656)
Q Consensus 581 dvMq~i~ssi~~l 593 (656)
|.|.-|..++...
T Consensus 476 e~l~~Lv~Ilk~d 488 (508)
T KOG3091|consen 476 EALTKLVNILKGD 488 (508)
T ss_pred HHHHHHHHHHHhH
Confidence 4444444444433
No 16
>PRK10869 recombination and repair protein; Provisional
Probab=75.88 E-value=1.6e+02 Score=34.18 Aligned_cols=70 Identities=20% Similarity=0.242 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhhhh-------HHHHhhhhhhh--hhHHHHHHHHHh
Q 006213 484 LNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQMTFL-------EESALMDRDYS--SSLLGAIEALRA 554 (656)
Q Consensus 484 ~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~L-------E~W~~LE~ehs--ssLs~a~eAL~A 554 (656)
...=+.+|..|..+.+..+.+..+.-+. .+-...|.-|+.-| .+|..||.++. .....+.+++..
T Consensus 156 ~~~~~~~y~~~~~~~~~l~~l~~~~~~~------~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L~n~e~i~~~~~~ 229 (553)
T PRK10869 156 LQEMRAAYQLWHQSCRDLAQHQQQSQER------AARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRLANSGQLLTTSQN 229 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH------HHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334577888887766555544432222 22334455555544 46777877773 344455555555
Q ss_pred ccccc
Q 006213 555 STLRL 559 (656)
Q Consensus 555 atlRL 559 (656)
+.-.|
T Consensus 230 ~~~~L 234 (553)
T PRK10869 230 ALQLL 234 (553)
T ss_pred HHHHh
Confidence 55444
No 17
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=74.67 E-value=1.3e+02 Score=32.53 Aligned_cols=90 Identities=18% Similarity=0.203 Sum_probs=54.8
Q ss_pred ccCCccchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhH
Q 006213 446 KVGENRVVDAHLLRLFHNRLLQWRFVNARANAALSAQRL------NAERSLYNAWIASSRLRESVRTKRTELQLLKQNLK 519 (656)
Q Consensus 446 Kk~~~~~Ed~HqLRLLhNRlLQWRFaNARAeaa~~~q~~------~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~K 519 (656)
|--..-.|+..--.+||--|+| +|.|+|-|-. -+|+- .-|.+|-.+-.++-.|-.-+.+.+.|++.+|.+..
T Consensus 6 ~~fss~~eE~~ywk~l~~~ykq-~f~~~reEl~-EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e 83 (333)
T KOG1853|consen 6 KTFSSDLEEDQYWKLLHHEYKQ-HFLQMREELN-EFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQE 83 (333)
T ss_pred ccccchhhHHHHHhhhHHHHHH-HHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445677788999999998 6999986643 23332 23345555555666666666666777766665443
Q ss_pred HHHHHHHhhhhhHHHHhhhhhhh
Q 006213 520 LTSILKSQMTFLEESALMDRDYS 542 (656)
Q Consensus 520 L~~IL~~Qm~~LE~W~~LE~ehs 542 (656)
-.. ..+..+-.+||++.+
T Consensus 84 ~q~-----~q~y~q~s~Leddls 101 (333)
T KOG1853|consen 84 DQR-----VQFYQQESQLEDDLS 101 (333)
T ss_pred HHH-----HHHHHHHHHHHHHHH
Confidence 222 223455567777765
No 18
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=74.57 E-value=96 Score=35.77 Aligned_cols=77 Identities=19% Similarity=0.286 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--hHHHHHHHHhhhhhHHHHhhhhhhh--hhHHHHHHHHHhccc
Q 006213 482 QRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQN--LKLTSILKSQMTFLEESALMDRDYS--SSLLGAIEALRASTL 557 (656)
Q Consensus 482 q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~--~KL~~IL~~Qm~~LE~W~~LE~ehs--ssLs~a~eAL~Aatl 557 (656)
.....-+.+|..|..+.+..+....+.-++++.... .+|..|-.... --.+|..||.+|. .....+.+++..+.-
T Consensus 158 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l-~~~E~e~L~~e~~~L~n~e~i~~~~~~~~~ 236 (563)
T TIGR00634 158 EKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADL-QPGEDEALEAEQQRLSNLEKLRELSQNALA 236 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCc-CCCcHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 345555677888877766544443333333222221 12222222222 2357788888873 334444444444433
Q ss_pred cc
Q 006213 558 RL 559 (656)
Q Consensus 558 RL 559 (656)
.|
T Consensus 237 ~L 238 (563)
T TIGR00634 237 AL 238 (563)
T ss_pred HH
Confidence 33
No 19
>cd07683 F-BAR_srGAP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP1, also called Rho GTPase-Activating Protein 13 (ARHGAP13), is a Cdc42- and RhoA-specific GAP and is expressed later in the development of CNS (central nervous system) tissues. It is an important downstream signaling molecule of Robo1. srGAP1 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-cha
Probab=73.38 E-value=1.4e+02 Score=32.10 Aligned_cols=112 Identities=13% Similarity=0.100 Sum_probs=60.0
Q ss_pred HHHHHHHhhhhhHHH-------HhhhhhhhhhHHHHHHHHHhccccccccCCcccchHHHHHH-HHHHHHHHHHHHHHHH
Q 006213 520 LTSILKSQMTFLEES-------ALMDRDYSSSLLGAIEALRASTLRLPVVGGARADFQNVKDA-ISSAVDVMQAMASSIC 591 (656)
Q Consensus 520 L~~IL~~Qm~~LE~W-------~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~slk~A-L~sAvdvMq~i~ssi~ 591 (656)
|+.-.+.|+.+|++. +.||.||+-+|..+.+-+..-.-..+=.-..+-| +...+ +..=-+||+.....-.
T Consensus 10 ld~~~e~~~~lLqDlqdF~RrRAeIE~EYS~~L~KLa~~f~~K~~s~~~~~~~~~~--s~~~S~~~~W~~lL~qT~~~sk 87 (253)
T cd07683 10 LEQQTEMRVQLLQDLQDFFRKKAEIESEYSRNLEKLAERFMAKTRSTKDHQQYKKD--QNLLSPVNCWYLLLNQVRRESK 87 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCC--cchhhHHHHHHHHHHHHHHHHH
Confidence 444445555555444 8999999999999999998865322211111222 11111 1111222322222211
Q ss_pred H------hh--hhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHH
Q 006213 592 L------LL--SKAGEVNSLVSELSNVSAKEHALLGQCK-DLLSTIAAMQV 633 (656)
Q Consensus 592 ~------ll--pKvee~~~LvsELA~Va~qE~~lLeEC~-eLL~~va~LqV 633 (656)
. .+ +-+..+..+..+++++..+=+++.-+|. |||..+..||.
T Consensus 88 ~h~~LSd~y~~~~~~r~~~~~ed~~ri~kkskEi~~~~~eeLlkV~~EL~t 138 (253)
T cd07683 88 DHATLSDIYLNNVIMRFMQISEDSTRMFKKSKEIAFQLHEDLMKVLNELYT 138 (253)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11 1133445577777777777777766775 56777777773
No 20
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=72.92 E-value=1.1e+02 Score=31.03 Aligned_cols=88 Identities=9% Similarity=0.048 Sum_probs=50.1
Q ss_pred HHHHHHHhhhhhHHHHhhhhhhhhhHHHHHHHHHhccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 006213 520 LTSILKSQMTFLEESALMDRDYSSSLLGAIEALRASTLRLPVVGGARADFQNVKDAISSAVDVMQAMASSICLLLSKAGE 599 (656)
Q Consensus 520 L~~IL~~Qm~~LE~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee 599 (656)
|...+..=-+-+..|+.+|.+...+|.++-.|+.+ +--.+...+.. .+.+.+.|...+...+.|...+..=--|--+
T Consensus 47 l~~~~~e~g~~f~~ls~~E~~l~~~le~~g~~~d~--~~~~~~~~~~~-~~~f~e~LkEy~~ya~slk~vlk~r~~~q~~ 123 (201)
T cd07622 47 VYKIHANYGRVFSEWSAIEKEMGDGLQKAGHYMDS--YAASIDNGLED-EELIADQLKEYLFFADSLRAVCKKHELLQYD 123 (201)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH--HHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333345899999999998888877777766 33333333322 3556677777666666666655543333333
Q ss_pred HHHHHHHHHHH
Q 006213 600 VNSLVSELSNV 610 (656)
Q Consensus 600 ~~~LvsELA~V 610 (656)
...+...|++.
T Consensus 124 ~e~~~~~L~~k 134 (201)
T cd07622 124 LEKAEDALANK 134 (201)
T ss_pred HHHHHHHHHHH
Confidence 33333334333
No 21
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.93 E-value=45 Score=34.34 Aligned_cols=46 Identities=20% Similarity=0.314 Sum_probs=37.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 006213 568 DFQNVKDAISSAVDVMQAMASSICLLLSKAGEVNSLVSELSNVSAK 613 (656)
Q Consensus 568 D~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~LvsELA~Va~q 613 (656)
++|--.+|+..+-|.+++=.-+.+.||-|+||++..+.-.-..+.|
T Consensus 162 ~vq~yr~aV~kl~d~~DanIK~~Y~lLAk~EEi~ksm~pv~~La~q 207 (222)
T KOG4514|consen 162 NVQVYRNAVNKLTDTLDANIKCQYQLLAKAEEITKSMKPVEQLAQQ 207 (222)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4566788999999999999999999999999998876554444444
No 22
>PRK14011 prefoldin subunit alpha; Provisional
Probab=68.34 E-value=12 Score=36.30 Aligned_cols=57 Identities=18% Similarity=0.196 Sum_probs=29.8
Q ss_pred hccccccccCCcc-----cchHH--------------HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 006213 554 ASTLRLPVVGGAR-----ADFQN--------------VKDAISSAVDVMQAMASSICLLLSKAGEVNSLVSELSNV 610 (656)
Q Consensus 554 AatlRLPv~~GAk-----aD~~s--------------lk~AL~sAvdvMq~i~ssi~~llpKvee~~~LvsELA~V 610 (656)
...+-+||++|+. .|.+. +.+|+.---+=.+.|......+...+++.+..+.+|..+
T Consensus 49 ~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~VEk~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~ 124 (144)
T PRK14011 49 SEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYLEKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKE 124 (144)
T ss_pred CCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999984 22222 334444333344445555555555555555544444443
No 23
>cd07684 F-BAR_srGAP3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 3. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP3, also called MEGAP (MEntal disorder associated GTPase-Activating Protein), is a Rho GAP with activity towards Rac1 and Cdc42. It impacts cell migration by regulating actin and microtubule cytoskeletal dynamics. The association between srGAP3 haploinsufficiency and mental retardation is under debate. srGAP3 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers wit
Probab=67.26 E-value=1.8e+02 Score=31.15 Aligned_cols=112 Identities=14% Similarity=0.153 Sum_probs=57.1
Q ss_pred HHHHHHHhhhhhHH-------HHhhhhhhhhhHHHHHHHHHhccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHH-
Q 006213 520 LTSILKSQMTFLEE-------SALMDRDYSSSLLGAIEALRASTLRLPVVGGARADFQNVKDAISSAVDVMQAMASSIC- 591 (656)
Q Consensus 520 L~~IL~~Qm~~LE~-------W~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~- 591 (656)
|+.-.+.|+.+|++ =+.||.||+-.|..+.+-+..-.-..+.. -.+.|-. +...+..=-+||......-.
T Consensus 10 ld~~~e~~i~~LqDLqdFyRrRAeIE~EYS~~L~KLA~~f~~K~~~~~~~-~s~~d~~-~~Sp~~~W~~lL~QT~~iskd 87 (253)
T cd07684 10 LEQQSESRLQLLQDLQEFFRRKAEIELEYSRSLEKLAERFSSKIRTSREH-QFKKDQQ-LLSPVNCWYLVLEQTRRESRD 87 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-cccCCCC-ccCHHHHHHHHHHHHHHHHHH
Confidence 44444455555444 48999999999999999986654333321 1122211 11112222233333222221
Q ss_pred ------Hhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHH
Q 006213 592 ------LLLSKA-GEVNSLVSELSNVSAKEHALLGQCK-DLLSTIAAMQV 633 (656)
Q Consensus 592 ------~llpKv-ee~~~LvsELA~Va~qE~~lLeEC~-eLL~~va~LqV 633 (656)
.|.--+ ..+....-+++++..+=+++.-+|. |||..+..||.
T Consensus 88 h~~LSd~y~~~~~~rl~~~~ed~~Ri~kkskEi~~~~~eeLlkV~~EL~t 137 (253)
T cd07684 88 HATLNDIFNNNVIVRLSQISEDVIRLFKKSKEIGLQMHEELLKVTNELYT 137 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222112 1222222367777777777666664 57777777774
No 24
>cd07609 BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domain of fungal Snf1p-interacting protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of mostly uncharacterized fungal proteins with similarity to Saccharomyces cerevisiae Snf1p-interacting protein 3 (SIP3). These proteins contain an N-terminal BAR domain followed by a Pleckstrin Homology (PH) domain. SIP3 interacts with SNF1 protein kinase and activates transcription when anchored to DNA. It may function in the SNF1 pathway. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=64.45 E-value=1.8e+02 Score=30.10 Aligned_cols=103 Identities=15% Similarity=0.075 Sum_probs=65.4
Q ss_pred HHHHhhhhhHHHHhhhhhhhhhH----------HHHHHHHHhccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 006213 523 ILKSQMTFLEESALMDRDYSSSL----------LGAIEALRASTLRLPVVGGARADFQNVKDAISSAVDVMQAMASSICL 592 (656)
Q Consensus 523 IL~~Qm~~LE~W~~LE~ehsssL----------s~a~eAL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~ 592 (656)
.++.|+.+||.|-+ .+..++ -.+++.+-.-.+--|+..|+..|.+=--.||...-+.+.+|...+-.
T Consensus 5 hf~~Qi~~iE~Wl~---~~~~~~~k~~~~~~~~e~~~nsfl~~~~p~~~~s~~vidqdYT~~al~~f~~~l~e~~~~ll~ 81 (214)
T cd07609 5 HFDDQVDAIEKWLD---GYVSSTKKLYSSLDELERVINSFLSHLLPPLLVSGGVIDQDYTPLALKRFGDGLKDFWGGVLS 81 (214)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccchhCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999942 233333 33333333333322488999999877778888888888888865555
Q ss_pred hhhhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006213 593 LLSKAGE-----VNSLVSELSNVSAKEHALLGQCKDLLSTI 628 (656)
Q Consensus 593 llpKvee-----~~~LvsELA~Va~qE~~lLeEC~eLL~~v 628 (656)
.+-+.+. +..++.|=.+...+-+.-+|.+.+=+..+
T Consensus 82 ~~~~~~~~~~~pL~~f~k~~i~~~Ke~rk~Fd~~q~kyD~~ 122 (214)
T cd07609 82 ALKGNDSLILDPLRSFVKSDIRPYKELRKNFEYYQRKYDSM 122 (214)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544333 34555555566667777777776654443
No 25
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=60.42 E-value=1.9e+02 Score=30.05 Aligned_cols=94 Identities=11% Similarity=0.134 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhhhhHHHHhhhhhhhhhHHHHHHHHHhccccccccCCcccchHHH
Q 006213 493 AWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQMTFLEESALMDRDYSSSLLGAIEALRASTLRLPVVGGARADFQNV 572 (656)
Q Consensus 493 ~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LE~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~sl 572 (656)
-|..|..-|+.|.-+|+.+...|.++|=.. .+ | ..+
T Consensus 112 ~~k~i~k~RKkLe~rRLdyD~~ksk~~kak---~~----------------------------------------~-~~~ 147 (215)
T cd07593 112 EMKEYHSARKKLESRRLAYDAALTKSQKAK---KE----------------------------------------D-SRL 147 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cc----------------------------------------c-hhH
Confidence 466777788888888887776664443110 00 0 225
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006213 573 KDAISSAVDVMQAMASSICLLLSKAGEV-NSLVSELSNVSAKEHALLGQCKDLLSTIAA 630 (656)
Q Consensus 573 k~AL~sAvdvMq~i~ssi~~llpKvee~-~~LvsELA~Va~qE~~lLeEC~eLL~~va~ 630 (656)
.+.|..|.+-+++-.-.+...|-.+-+. ..-+.+|...+.-+.....+|.++|..+..
T Consensus 148 eeElr~Ae~kfees~E~a~~~M~~i~~~e~e~~~~L~~lv~AQl~Yh~q~~e~L~~l~~ 206 (215)
T cd07593 148 EEELRRAKAKYEESSEDVEARMVAIKESEADQYRDLTDLLDAELDYHQQSLDVLREVRQ 206 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666655555555555555565 667889999999999999999999987653
No 26
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=59.79 E-value=4.6e+02 Score=33.24 Aligned_cols=27 Identities=22% Similarity=0.129 Sum_probs=15.9
Q ss_pred hhhhhhhhcchhhHHHHHHHHHHHHHH
Q 006213 455 AHLLRLFHNRLLQWRFVNARANAALSA 481 (656)
Q Consensus 455 ~HqLRLLhNRlLQWRFaNARAeaa~~~ 481 (656)
.+++.+++.+|.+++---...+..+..
T Consensus 224 ~~~~~~~~~~~~~~~~~l~~~~~~l~~ 250 (1163)
T COG1196 224 ELELALLLAKLKELRKELEELEEELSR 250 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777776555555544433
No 27
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=59.36 E-value=1.3e+02 Score=37.85 Aligned_cols=125 Identities=18% Similarity=0.215 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhhhhHHHHhhhhhhhhhHHHHHHHHHhccccccccCCcc
Q 006213 487 ERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQMTFLEESALMDRDYSSSLLGAIEALRASTLRLPVVGGAR 566 (656)
Q Consensus 487 E~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LE~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GAk 566 (656)
|.+|..+=..+++++.-+.+-++++++++.++|+.. ++..-+..=...+.++...+-.-++-|++.---|+-..|..
T Consensus 398 ~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e---~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~~ 474 (1174)
T KOG0933|consen 398 EDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLRE---GELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQE 474 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchH
Confidence 467777778889999999999999999999999865 45444455555666677777788888888777777766653
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhh----------
Q 006213 567 ADFQNVKDAISSAVDVMQAMASSICLLLSKAGEVNSLVSELSNVSAKEHALLGQCKDLLSTIAAMQVKEC---------- 636 (656)
Q Consensus 567 aD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~LvsELA~Va~qE~~lLeEC~eLL~~va~LqVeE~---------- 636 (656)
-+ |--..+.....=..|.++-..|++.++.++..+.
T Consensus 475 e~----------------------------------l~q~~~~l~~~~~~lk~~~~~l~a~~~~~~f~Y~dP~~nfdrs~ 520 (1174)
T KOG0933|consen 475 EA----------------------------------LKQRRAKLHEDIGRLKDELDRLLARLANYEFTYQDPEPNFDRSK 520 (1174)
T ss_pred HH----------------------------------HHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCccchHHH
Confidence 33 2222222222233455666677777777776655
Q ss_pred --hhhhhhhhcccc
Q 006213 637 --SLRTHILQSERL 648 (656)
Q Consensus 637 --SLR~~lIQ~~~~ 648 (656)
-|-+||||.+..
T Consensus 521 V~G~Va~Li~vkd~ 534 (1174)
T KOG0933|consen 521 VKGLVAKLIKVKDR 534 (1174)
T ss_pred HHHHHHHHheeCcc
Confidence 456677777643
No 28
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=58.82 E-value=88 Score=30.86 Aligned_cols=82 Identities=20% Similarity=0.281 Sum_probs=54.0
Q ss_pred hhhhHHHHHHHHHhccccccccCCcc-cchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 006213 541 YSSSLLGAIEALRASTLRLPVVGGAR-ADFQNVKDAISSAVDVMQAMASSICLLLSKAGEVNSLVSELSNVSAKEHALLG 619 (656)
Q Consensus 541 hsssLs~a~eAL~AatlRLPv~~GAk-aD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~LvsELA~Va~qE~~lLe 619 (656)
.+.++..+++.|..+-.. + .+.. ..++-.+++++..-|-+++=.-+.+.|+.|+||++.-+..+-..+.|=| .|.
T Consensus 64 ia~svd~ll~~L~~~L~~--m-S~~Tv~~~~~y~~sv~~~cdsvD~sik~~y~liakceELn~~M~~v~~La~qIK-~Ik 139 (149)
T PF10157_consen 64 IAESVDSLLRSLRSSLHS--M-SAITVEHMETYKDSVDKLCDSVDASIKSMYTLIAKCEELNESMKPVYKLAQQIK-DIK 139 (149)
T ss_pred HHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 345555555555544333 1 2222 3345567777777777777777888899999999999999888876644 345
Q ss_pred HHHHHHH
Q 006213 620 QCKDLLS 626 (656)
Q Consensus 620 EC~eLL~ 626 (656)
+|-|+|.
T Consensus 140 ~~lD~lE 146 (149)
T PF10157_consen 140 KLLDLLE 146 (149)
T ss_pred HHHHHHH
Confidence 5665554
No 29
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=56.96 E-value=1.2e+02 Score=28.58 Aligned_cols=54 Identities=11% Similarity=0.120 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006213 571 NVKDAISSAVDVMQAMASSICLLLSKAGEVNSLVSELSNVSAKEHALLGQCKDLL 625 (656)
Q Consensus 571 slk~AL~sAvdvMq~i~ssi~~llpKvee~~~LvsELA~Va~qE~~lLeEC~eLL 625 (656)
++.++|..++++=..-...-..+..++.+ ..+...|..++.+|+.-++...++|
T Consensus 101 ~~~~~L~~~~~~E~~ai~~Y~~~~~~~~d-~~~r~ll~~I~~eE~~H~~~L~~~l 154 (154)
T cd07908 101 SIKEMLKLDIASEKAAIAKYKRQAETIKD-PYIRALLNRIILDEKLHIKILEELL 154 (154)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45555555544322222222333333322 4566678889999999998887765
No 30
>cd07682 F-BAR_srGAP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP2 is expressed in zones of neuronal differentiation. It plays a role in the regeneration of neurons and axons. srGAP2 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=56.32 E-value=2.9e+02 Score=29.85 Aligned_cols=113 Identities=14% Similarity=0.112 Sum_probs=61.4
Q ss_pred HHHHHHHhhhhhHH-------HHhhhhhhhhhHHHHHHHHHhcc--ccccccCCc--ccc-hHHHHHHHHHHHHHHHHHH
Q 006213 520 LTSILKSQMTFLEE-------SALMDRDYSSSLLGAIEALRAST--LRLPVVGGA--RAD-FQNVKDAISSAVDVMQAMA 587 (656)
Q Consensus 520 L~~IL~~Qm~~LE~-------W~~LE~ehsssLs~a~eAL~Aat--lRLPv~~GA--kaD-~~slk~AL~sAvdvMq~i~ 587 (656)
|+.-.+.|+.+|++ =+.||.||+-+|..+.+-+..-. .+.+...|= ..- +.--...|.+-..+-..=.
T Consensus 10 ld~q~e~~i~lLqDLqdFyRrRAeIE~EYS~~L~KLA~~f~~K~~~~~~~~s~~d~~~~Sp~~~W~~lL~QT~~~Skdh~ 89 (263)
T cd07682 10 LDQQCELRVQLLQDLQDFFRKKAEIEMDYSRNLEKLAERFLAKTRSTKDQQFKKDQNVLSPVNCWNLLLNQVKRESRDHA 89 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555544 48999999999999999987744 223322111 111 1111222222222222222
Q ss_pred HHHHHhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhH
Q 006213 588 SSICLLLSK-AGEVNSLVSELSNVSAKEHALLGQCK-DLLSTIAAMQ 632 (656)
Q Consensus 588 ssi~~llpK-vee~~~LvsELA~Va~qE~~lLeEC~-eLL~~va~Lq 632 (656)
..-..|.-+ +..+..+..++++++.+=+++.-+|. |||..+..||
T Consensus 90 ~LSd~y~~~~~~rl~~~~ed~~Ri~KksKEi~~q~~eeLlkV~~ELq 136 (263)
T cd07682 90 TLSDIYLNNIIPRFVQISEDSGRLFKKSKEVGLQLQEDLMKVLNELY 136 (263)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222 33445677788888888777777775 5777777777
No 31
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=54.56 E-value=5.3e+02 Score=32.36 Aligned_cols=19 Identities=11% Similarity=0.057 Sum_probs=12.9
Q ss_pred hhHHHHhhhhhhhhhHHHH
Q 006213 530 FLEESALMDRDYSSSLLGA 548 (656)
Q Consensus 530 ~LE~W~~LE~ehsssLs~a 548 (656)
+.|-...|+.+|..-|...
T Consensus 429 lkek~t~l~~~h~~lL~K~ 447 (980)
T KOG0980|consen 429 LKEKYTELRQEHADLLRKY 447 (980)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677788888887555443
No 32
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=54.29 E-value=2.7e+02 Score=29.25 Aligned_cols=90 Identities=19% Similarity=0.249 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhhhhHHHHhhhhhhhhhHHHHHHHHHhccccccccCCcccc
Q 006213 489 SLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQMTFLEESALMDRDYSSSLLGAIEALRASTLRLPVVGGARAD 568 (656)
Q Consensus 489 ~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LE~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD 568 (656)
.|=+-|..|..-|+.|.-+|+.+...|..+|=. |
T Consensus 127 ~l~~dlk~i~k~RKkLe~rRLd~D~~K~r~~ka----------------e------------------------------ 160 (220)
T cd07617 127 FLEGDWKTISKERRLLQNRRLDLDACKARLKKA----------------E------------------------------ 160 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------H------------------------------
Confidence 333467788888889999998888777655320 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006213 569 FQNVKDAISSAVDVMQAMASSICLLLSKAGEV-NSLVSELSNVSAKEHALLGQCKDLLSTIA 629 (656)
Q Consensus 569 ~~slk~AL~sAvdvMq~i~ssi~~llpKvee~-~~LvsELA~Va~qE~~lLeEC~eLL~~va 629 (656)
+.|..|.+-.++=.-....+|-.+-+. ..-|.+|...+.-+.....+|.++|..+.
T Consensus 161 -----~elr~A~~kf~~~~E~a~~~M~~il~~~~e~l~~L~~lv~AQl~Yh~q~~e~L~~l~ 217 (220)
T cd07617 161 -----HELRVAQTEFDRQAEVTRLLLEGISSTHVNHLRCLHEFVEAQATYYAQCYRHMLDLQ 217 (220)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133333333333333334445555566 47789999999999999999999998764
No 33
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=54.13 E-value=2.8e+02 Score=29.04 Aligned_cols=96 Identities=17% Similarity=0.212 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhhhhHHHHhhhhhhhhhHHHHHHHHHhccccccccCCcccchHH
Q 006213 492 NAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQMTFLEESALMDRDYSSSLLGAIEALRASTLRLPVVGGARADFQN 571 (656)
Q Consensus 492 ~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LE~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~s 571 (656)
+-|..|..-|+.|.-+|+.+...|.++|=.. .-|. ...
T Consensus 130 ~dik~i~k~RKkLe~rRLd~D~~k~r~~kAk-------~~~~-----------------------------------~~~ 167 (229)
T cd07594 130 GDMKTISKERKLLENKRLDLDACKTRVKKAK-------SAEA-----------------------------------IEQ 167 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------Cccc-----------------------------------hhh
Confidence 3566777778888888888877776553110 0000 123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006213 572 VKDAISSAVDVMQAMASSICLLLSKAGEV-NSLVSELSNVSAKEHALLGQCKDLLSTIA 629 (656)
Q Consensus 572 lk~AL~sAvdvMq~i~ssi~~llpKvee~-~~LvsELA~Va~qE~~lLeEC~eLL~~va 629 (656)
+.+.|..|.+-.+.-.-.+...|-.+-+. ..-+.+|...+.-+....++|.++|..+.
T Consensus 168 ~e~elr~Ae~kF~~~~E~a~~~M~~i~~~~~~~~~~L~~lv~AQl~Yh~q~~e~L~~l~ 226 (229)
T cd07594 168 AEQDLRVAQSEFDRQAEITKLLLEGISSTHANHLRCLRDFVEAQMTYYAQCYQYMDDLQ 226 (229)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555556665 67889999999999999999999998764
No 34
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=52.57 E-value=2.5e+02 Score=31.79 Aligned_cols=109 Identities=11% Similarity=0.089 Sum_probs=68.3
Q ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 006213 457 LLRLFHNRLLQWRFVNARANAALSAQRLN------------------AERSLYNAWIASSRLRESVRTKRTELQLLKQNL 518 (656)
Q Consensus 457 qLRLLhNRlLQWRFaNARAeaa~~~q~~~------------------AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~ 518 (656)
..+-.++.||+=+|.++.++......+.. +-..+|+.|..+++-=.+.+.+..-|+..+.-.
T Consensus 61 ~i~R~~D~~l~~~~~~~~s~~~~~~~~~~~l~~le~~~~~~~~gl~~~l~~ff~a~~~la~~P~~~~~r~~vl~~a~~la 140 (456)
T PRK07191 61 GIRRLSQQYVVMQEWQANSQQGYYDAGEQYFNALELVVGNKSTSLATGLNNFFSALSAATQLPDSPPMRQQVIESANAMA 140 (456)
T ss_pred EEEEhHhHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 34445688888888888777766655443 235688888888876666777776676666554
Q ss_pred H----HHHHHHHhhhhhHHHHhhhhhhhhhHHHHHHHHHhccccccccCCc
Q 006213 519 K----LTSILKSQMTFLEESALMDRDYSSSLLGAIEALRASTLRLPVVGGA 565 (656)
Q Consensus 519 K----L~~IL~~Qm~~LE~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GA 565 (656)
. +..-|..|..-++.=-...-+..+.|..-|..|..-+.+....|+.
T Consensus 141 ~~~n~~~~~l~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~~~~~~g~~ 191 (456)
T PRK07191 141 LRFNNVNNFIVQQKKSIGQQRDATVKQINSLTRSIADYNQKILKNRSDGNN 191 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 3 3333333333333333334445677777777888887777665443
No 35
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=52.10 E-value=3.1e+02 Score=28.87 Aligned_cols=103 Identities=10% Similarity=0.081 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhhhhHHHHhhhhhhhhhHHHHHHHHHhccccccccCCcccchHH
Q 006213 492 NAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQMTFLEESALMDRDYSSSLLGAIEALRASTLRLPVVGGARADFQN 571 (656)
Q Consensus 492 ~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LE~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~s 571 (656)
.-|..|.+.|+.|..+|+.+.-.|..++=. -|. +. ..+....++.
T Consensus 118 ~dik~i~k~RKkLe~~RLd~D~~k~r~~ka-----------~k~------~~------------------~~~~~~K~~~ 162 (244)
T cd07595 118 VEIPNIQKQKKRLSKLVLDMDSARSRYNAA-----------HKS------SG------------------GQGAAAKVDA 162 (244)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhc-----------ccc------cc------------------ccccccccch
Confidence 456667777888888887777666544210 010 00 1112333446
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006213 572 VKDAISSAVDVMQAMASSICLLLSKAGEV-NSLVSELSNVSAKEHALLGQCKDLLSTIA 629 (656)
Q Consensus 572 lk~AL~sAvdvMq~i~ssi~~llpKvee~-~~LvsELA~Va~qE~~lLeEC~eLL~~va 629 (656)
|++.|..|.+-+.+...-...-|=.+-+. ...+..|...+.......+.|.++|..+.
T Consensus 163 l~eE~e~ae~k~e~~~e~~~~~M~~~l~~E~e~~~~l~~lv~aQl~YH~~a~e~L~~l~ 221 (244)
T cd07595 163 LKDEYEEAELKLEQCRDALATDMYEFLAKEAEIASYLIDLIEAQREYHRTALSVLEAVL 221 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666555443322222223333 45677788888899999999999988754
No 36
>PLN03188 kinesin-12 family protein; Provisional
Probab=51.49 E-value=3.1e+02 Score=35.47 Aligned_cols=52 Identities=17% Similarity=0.161 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH-hHHH----HHHHHhhhhhHHHHhhhhhhhhhH
Q 006213 494 WIASSRLRESVRTKRTELQLLKQN-LKLT----SILKSQMTFLEESALMDRDYSSSL 545 (656)
Q Consensus 494 W~~is~LR~sVa~KRieLq~lkq~-~KL~----~IL~~Qm~~LE~W~~LE~ehsssL 545 (656)
|..+..=|--+...|+||...|.- ..|. --+.++-..||++++||++|..=|
T Consensus 1071 r~eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll 1127 (1320)
T PLN03188 1071 RTELDASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLL 1127 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555455555567777665542 1233 333455568999999999996433
No 37
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=51.09 E-value=1.2e+02 Score=27.90 Aligned_cols=96 Identities=18% Similarity=0.125 Sum_probs=64.6
Q ss_pred hhHHHHhhhhhhhhhHHHHHHHHHhcccccc-----cc----CCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 006213 530 FLEESALMDRDYSSSLLGAIEALRASTLRLP-----VV----GGARADFQNVKDAISSAVDVMQAMASSICLLLSKAGEV 600 (656)
Q Consensus 530 ~LE~W~~LE~ehsssLs~a~eAL~AatlRLP-----v~----~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~ 600 (656)
+|++-..-|.+|..-|..-+..|-..-.--+ +. .....+...+.++|..+++.-..+...++.+...+++-
T Consensus 43 ~~~~~~~ee~~Had~laEri~~lGg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~~~~~~~a~~~ 122 (148)
T cd01052 43 ELEEAAEEELNHAELLAERIYELGGTPPRDPKDWYEISGCKCGYLPPDPPDVKGILKVNLKAERCAIKVYKELCDMTHGK 122 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhcccccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5666677888999988888888876543211 11 11122445677888888888888888888888766554
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHH
Q 006213 601 NSLVSE-LSNVSAKEHALLGQCKDLL 625 (656)
Q Consensus 601 ~~LvsE-LA~Va~qE~~lLeEC~eLL 625 (656)
+....+ |-.+...|...+...++||
T Consensus 123 D~~t~~ll~~~l~de~~h~~~~~~~~ 148 (148)
T cd01052 123 DPVTYDLALAILNEEIEHEEDLEELL 148 (148)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 333333 4567778888888887775
No 38
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=50.91 E-value=3.7e+02 Score=30.87 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006213 569 FQNVKDAISSAVDVMQAMASSICLL---LSKAGEVNSLVSELSNVSAKEHALLGQCKDLLSTI 628 (656)
Q Consensus 569 ~~slk~AL~sAvdvMq~i~ssi~~l---lpKvee~~~LvsELA~Va~qE~~lLeEC~eLL~~v 628 (656)
+...|..|..|++++..=.+++..- --|..+++.+-.+.-.-.-.|.++|+.|++||..+
T Consensus 103 L~~~k~rle~~L~~~~~P~~ia~eCL~~RekR~~~dlv~D~Ve~EL~kE~eli~~~q~ll~~~ 165 (421)
T KOG2685|consen 103 LLHEKRRLERALNALALPLSIAEECLAHREKRQGIDLVHDEVETELHKEVELIENIQELLKKT 165 (421)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhcccchhhccccHHHHHhHHHHHHHHHHHHHHH
Confidence 4455666666666665444433333 34566666666666666777888888888888654
No 39
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=50.64 E-value=1.5e+02 Score=33.59 Aligned_cols=69 Identities=17% Similarity=0.261 Sum_probs=37.1
Q ss_pred CCcccchHHHHHHHHHHHHHH--------HHHHHHHHHhhhhhhhHH-HHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 006213 563 GGARADFQNVKDAISSAVDVM--------QAMASSICLLLSKAGEVN-SLVSELSNVSAKE----HALLGQCKDLLSTIA 629 (656)
Q Consensus 563 ~GAkaD~~slk~AL~sAvdvM--------q~i~ssi~~llpKvee~~-~LvsELA~Va~qE----~~lLeEC~eLL~~va 629 (656)
.+....+..||..|.+..+-| ..|.-.|.++..++..+. ....+...+=.-| +++|-.|-++|-++.
T Consensus 272 elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE~~~~Qq~~q~e~~~n~~~r~~l~k~inllL~l~ 351 (395)
T PF10267_consen 272 ELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLEQQQQQQVVQLEGTENSRARALLGKLINLLLTLL 351 (395)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHHH
Confidence 344556666676666555433 456677777777777776 2112222221112 466777766655544
Q ss_pred Hh
Q 006213 630 AM 631 (656)
Q Consensus 630 ~L 631 (656)
.+
T Consensus 352 ~v 353 (395)
T PF10267_consen 352 TV 353 (395)
T ss_pred HH
Confidence 43
No 40
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=49.83 E-value=3.2e+02 Score=28.45 Aligned_cols=89 Identities=12% Similarity=0.086 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhhhhHHHHhhhhhhhhhHHHHHHHHHhccccccccCCcccchH
Q 006213 491 YNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQMTFLEESALMDRDYSSSLLGAIEALRASTLRLPVVGGARADFQ 570 (656)
Q Consensus 491 y~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LE~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~ 570 (656)
-.-|..|.+.|+.|.-+|+.+...|.++ ... +
T Consensus 124 ~~dik~i~k~RKkLe~rRLdyD~~k~k~--~k~-----------------------------------------~----- 155 (223)
T cd07592 124 DKDLKEINHHRKKLEGRRLDYDYKKRKQ--GKG-----------------------------------------P----- 155 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccC-----------------------------------------c-----
Confidence 3457788899999999999988766432 110 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006213 571 NVKDAISSAVDVMQAMASSICLLLSKAGEV-NSLVSELSNVSAKEHALLGQCKDLLSTIA 629 (656)
Q Consensus 571 slk~AL~sAvdvMq~i~ssi~~llpKvee~-~~LvsELA~Va~qE~~lLeEC~eLL~~va 629 (656)
.+.|..|.+-+++-.-.+...|-.+-+. ...+.+|...+.-+....++|-++|..+.
T Consensus 156 --eeEl~~Ae~kfe~s~E~a~~~M~~il~~e~e~~~~L~~lveAQl~Yh~~~~e~L~~l~ 213 (223)
T cd07592 156 --DEELKQAEEKFEESKELAENSMFNLLENDVEQVSQLSALVEAQLDYHRQSAEILEELQ 213 (223)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222233333333222222223333333 55678889999999999999999998764
No 41
>cd07677 F-BAR_FCHSD2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 2 (FCHSD2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 2 (FCHSD2) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=49.26 E-value=3.2e+02 Score=29.40 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=57.8
Q ss_pred HhhhhhHHH-------HhhhhhhhhhHHHHHHHHHhccccc--cccC----Cccc-chHHHHHHHHHHHHHHHHHHHHHH
Q 006213 526 SQMTFLEES-------ALMDRDYSSSLLGAIEALRASTLRL--PVVG----GARA-DFQNVKDAISSAVDVMQAMASSIC 591 (656)
Q Consensus 526 ~Qm~~LE~W-------~~LE~ehsssLs~a~eAL~AatlRL--Pv~~----GAka-D~~slk~AL~sAvdvMq~i~ssi~ 591 (656)
.||.+|++| +.+|++|+-.|..+......-.-++ |+.- +.+. +.++....+..=-.+|...++.-.
T Consensus 5 ~e~~~LqDiqqFyreRs~IEkEYS~kL~kL~kky~~Kk~k~ss~lsvgd~p~~tpgsle~~~S~~~~W~~~L~~Te~~A~ 84 (260)
T cd07677 5 EQMTKLQAKHQAECKLLEDEREFSQKIAAIESEYAQKEQKLASQYLKSDWRGMKADERADYRSMYTVWKSFLEGTMQVAQ 84 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCccCCCCcchhhhhHHHHHHHHHHHHHHHHH
Confidence 455556555 7899999999999987766554332 2221 2222 333333444445566666666666
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 006213 592 LLLSKAGEVNSLVSELSNVSAKE-HALLGQCKDLLSTI 628 (656)
Q Consensus 592 ~llpKvee~~~LvsELA~Va~qE-~~lLeEC~eLL~~v 628 (656)
.=+--.+....++++-+.++.-= -.++-.|.|.+..+
T Consensus 85 ~~~~~ae~l~~~~a~~~k~~r~~ke~~~Kk~~e~~~~l 122 (260)
T cd07677 85 SRINICENYKNLISEPARTVRLYKEQQLKRCVDQLTKI 122 (260)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555566666677666555411 12334555544443
No 42
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=49.17 E-value=2.9e+02 Score=29.47 Aligned_cols=38 Identities=21% Similarity=0.313 Sum_probs=26.1
Q ss_pred HhHHHHHHHHhhhhhHHH-------HhhhhhhhhhHHHHHHHHHh
Q 006213 517 NLKLTSILKSQMTFLEES-------ALMDRDYSSSLLGAIEALRA 554 (656)
Q Consensus 517 ~~KL~~IL~~Qm~~LE~W-------~~LE~ehsssLs~a~eAL~A 554 (656)
-.+|..-....+.+||+. +.+|.+|+..|..++.-...
T Consensus 7 ~~~L~~~~~~~i~lLedi~~F~reRa~IE~EYa~~L~kLakky~~ 51 (264)
T cd07654 7 LSKLQAKHQTECDLLEDIRTYSQKKAAIEREYGQALQKLASQFLK 51 (264)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444445555555544 79999999999999887643
No 43
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=49.00 E-value=4.3e+02 Score=29.61 Aligned_cols=171 Identities=15% Similarity=0.120 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHH------HHHhhhhhH-HHHhhhhh--h
Q 006213 471 VNARANAALSAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSI------LKSQMTFLE-ESALMDRD--Y 541 (656)
Q Consensus 471 aNARAeaa~~~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~I------L~~Qm~~LE-~W~~LE~e--h 541 (656)
+.++-+.-...+....++...+.=.++.+||..+..-.++++..+.+..|..+ ...|+..|. +-.....+ .
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lr~~~~~ae~~~~~~~~~~~l~~~~~~~~~~~~~~~~ln~ql~~~~~~~~~ 257 (458)
T COG3206 178 AQAYLADQLEAQLEAFRRASDSLDERLEELRARLQEAEAQVEDFRAQHGLTDAARGQLLSEQQLSALNTQLQSARARLAQ 257 (458)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666677777888888899999999999999999999999888774 222233332 11222222 2
Q ss_pred hhhHHHHHHHHHhccc---cccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 006213 542 SSSLLGAIEALRASTL---RLPVVGGARADFQNVKDAISSAVDVMQAMASSICLLLSKAGEVNSLVSELSNVSAKEHALL 618 (656)
Q Consensus 542 sssLs~a~eAL~Aatl---RLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~LvsELA~Va~qE~~lL 618 (656)
..+.-.....+..... .++-+.... .++.|++-..+.......+.....-..|.+......+.++-.-..+|-.-+
T Consensus 258 ~~a~l~~~~~~~~~~~~~~~~~~~~~s~-~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~ 336 (458)
T COG3206 258 AEARLASLLQLLPLGREAAALREVLESP-TIQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQI 336 (458)
T ss_pred HHHHHHHHHHhhcccccchhhhHHhccH-HHHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222222 222221222 366777777777766667776666666666666555555544444443222
Q ss_pred HHHHHHHH-HHHHhHHhhhhhhhhhhhc
Q 006213 619 GQCKDLLS-TIAAMQVKECSLRTHILQS 645 (656)
Q Consensus 619 eEC~eLL~-~va~LqVeE~SLR~~lIQ~ 645 (656)
- .-+. .+..++-+|.+|...+-++
T Consensus 337 ~---~~~~~~~~~l~~~~~~L~~~~~~l 361 (458)
T COG3206 337 L---ASLPNELALLEQQEAALEKELAQL 361 (458)
T ss_pred H---HhchhHHHHHHHHHHHHHHHHHHH
Confidence 1 1111 1334555555555544443
No 44
>PF07373 CAMP_factor: CAMP factor (Cfa); InterPro: IPR010860 This family consists of several bacterial CAMP factor (Cfa) proteins, which seem to be specific to Streptococcus species. The CAMP reaction is a synergistic lysis of erythrocytes by the interaction of an extracellular protein (CAMP factor) produced by some streptococcal species with the Staphylococcus aureus sphingomyelinase C (beta-toxin) [].
Probab=48.94 E-value=2.9e+02 Score=29.26 Aligned_cols=83 Identities=17% Similarity=0.091 Sum_probs=61.1
Q ss_pred HHHHhccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH--------HHHHHHHHHHHHHHH
Q 006213 550 EALRASTLRLPVVGGARADFQNVKDAISSAVDVMQAMASSICLLLSKAGEVNSLVSE--------LSNVSAKEHALLGQC 621 (656)
Q Consensus 550 eAL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~LvsE--------LA~Va~qE~~lLeEC 621 (656)
..|+...-..+.-+-.-.|+..+.-=+.-..++-++|--+...|.-||++-...+.+ +++.......+.++|
T Consensus 55 ~~l~~~l~~~~~G~~~~ydl~sI~~Ri~Ll~~~~~aI~~~tt~L~~KVq~AH~~~g~~it~aii~~~npfat~~ql~~~i 134 (228)
T PF07373_consen 55 FELKQSLEKIAEGGITIYDLDSIPARIELLIDVGDAIHFATTELQYKVQAAHVEIGFEITKAIIRAINPFATVDQLKDEI 134 (228)
T ss_pred HHHHHHHHHHhcCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 333443334444333456888888888888999999999999999999876555443 455567888999999
Q ss_pred HHHHHHHHHhH
Q 006213 622 KDLLSTIAAMQ 632 (656)
Q Consensus 622 ~eLL~~va~Lq 632 (656)
.+|......++
T Consensus 135 ~~l~~~~~kv~ 145 (228)
T PF07373_consen 135 EALKALLEKVL 145 (228)
T ss_pred HHHHHHHHHHH
Confidence 99998877764
No 45
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=48.76 E-value=3.7e+02 Score=31.59 Aligned_cols=189 Identities=13% Similarity=0.102 Sum_probs=100.9
Q ss_pred CCccchhhhhhhhhhcchh-hHHHHHHHHHHHHHHHHH--------HHHHHHH----HHHHHHHHHHHHHHHhHHHHHHH
Q 006213 448 GENRVVDAHLLRLFHNRLL-QWRFVNARANAALSAQRL--------NAERSLY----NAWIASSRLRESVRTKRTELQLL 514 (656)
Q Consensus 448 ~~~~~Ed~HqLRLLhNRlL-QWRFaNARAeaa~~~q~~--------~AE~~Ly----~~W~~is~LR~sVa~KRieLq~l 514 (656)
.+++-+=+--++-||||+= -++|-----+.+...-|. +...+|- .+|-.|..|-+-|...=+.++..
T Consensus 133 ~PS~k~F~~IFK~LY~~lDp~f~F~~r~E~eV~~~lKnL~YPfl~sI~kSqlsAI~ph~Wp~iLgMlhW~V~li~~~~~~ 212 (622)
T COG5185 133 QPSQKGFIIIFKWLYLRLDPGFGFTKRIENEVYQILKNLRYPFLESINKSQLSAIGPHNWPKILGMLHWMVRLIIKLDMC 212 (622)
T ss_pred CCccccHHHHHHHHHhccCCCCCcchhhHHHHHHHHHhcCCchhhhhhHhHhhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 4455556677888999987 788865555555443321 2233333 47999999988887776644332
Q ss_pred HH----------------HhHHHHHHHHhhhhh---HHHHhhhhhhhhhHHHHHHHHHhccccccccCCcccchHHHHHH
Q 006213 515 KQ----------------NLKLTSILKSQMTFL---EESALMDRDYSSSLLGAIEALRASTLRLPVVGGARADFQNVKDA 575 (656)
Q Consensus 515 kq----------------~~KL~~IL~~Qm~~L---E~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~slk~A 575 (656)
-| ++-.+.+.++=|.|| ++...+|.|.---+......|..-+-+|= -..+.|.+-
T Consensus 213 ~~~~~tl~qq~~~e~~Vek~lfdY~~~~Y~~fl~~~~~~~~~e~Elk~~f~~~~~~i~~~i~~lk------~~n~~l~e~ 286 (622)
T COG5185 213 LQPLKTLDQQDRYELMVEKLLFDYFTESYKSFLKLEDNYEPSEQELKLGFEKFVHIINTDIANLK------TQNDNLYEK 286 (622)
T ss_pred HhhhchHhhccHHHHHHHHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
Confidence 22 233445555556666 34566667666666666666665544432 233456666
Q ss_pred HHHHHHHHHHHHHHHHH------hhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhh
Q 006213 576 ISSAVDVMQAMASSICL------LLSKAGEV-NSLVSELSNVSAKEHALLGQCKDLLSTIAAMQVKECSLRTHI 642 (656)
Q Consensus 576 L~sAvdvMq~i~ssi~~------llpKvee~-~~LvsELA~Va~qE~~lLeEC~eLL~~va~LqVeE~SLR~~l 642 (656)
+.+|.++=+.|.-.=.. -.-|.+.- +.+=..--.-.+.=..|-.||.+-=..+.+||-++.+|+.|+
T Consensus 287 i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~ 360 (622)
T COG5185 287 IQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQL 360 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 66666555444322111 11111110 000000000111112234566666667778888888888765
No 46
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=48.62 E-value=4.7e+02 Score=29.99 Aligned_cols=102 Identities=16% Similarity=0.186 Sum_probs=77.0
Q ss_pred HHHHHHHHhhhhhHHHHhhhhhhhhhHHHHHHHHHhccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHH-Hhhhhh
Q 006213 519 KLTSILKSQMTFLEESALMDRDYSSSLLGAIEALRASTLRLPVVGGARADFQNVKDAISSAVDVMQAMASSIC-LLLSKA 597 (656)
Q Consensus 519 KL~~IL~~Qm~~LE~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~-~llpKv 597 (656)
.|..|++.||-+=|....|+.++.-.+.-+.++|+---+| .+-|.|-|+.++++=|.=..++. .|-..-
T Consensus 268 eL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR----------~erLEEqLNdlteLqQnEi~nLKqElasme 337 (455)
T KOG3850|consen 268 ELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYR----------YERLEEQLNDLTELQQNEIANLKQELASME 337 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999999999987766 45678888888888776555555 666666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006213 598 GEVNSLVSELSNVSAKEHALLGQCKDLLSTIAAMQV 633 (656)
Q Consensus 598 ee~~~LvsELA~Va~qE~~lLeEC~eLL~~va~LqV 633 (656)
|.+.|.--|=++=+ .+.||-|..-+..+...|.
T Consensus 338 ervaYQsyERaRdI---qEalEscqtrisKlEl~qq 370 (455)
T KOG3850|consen 338 ERVAYQSYERARDI---QEALESCQTRISKLELQQQ 370 (455)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 77777777766554 2456777766666655554
No 47
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=48.39 E-value=8.8e+02 Score=33.27 Aligned_cols=76 Identities=20% Similarity=0.235 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHhccccccccCCccc-chHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006213 543 SSLLGAIEALRASTLRLPVVGGARA-DFQNVKDAISSAVDVMQAMASSICLLLSKAGEVNSLVSELSNVSAKEHALLGQC 621 (656)
Q Consensus 543 ssLs~a~eAL~AatlRLPv~~GAka-D~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~LvsELA~Va~qE~~lLeEC 621 (656)
++....+.+|.+..+++=-.++-+- |.+- +..||..+...-.||.+.++.=++.|||.
T Consensus 571 n~~gerv~~~~a~a~~f~~~~~~~~cdp~v---------------------i~~R~~~le~~y~eL~~laa~RRarLE~s 629 (2473)
T KOG0517|consen 571 NAQGERVKALNAQALRFDSPKEYKPCDPQV---------------------IQERVAHLEQCYQELVELAAARRARLEES 629 (2473)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777776654445553 5432 33455566666777777777777777777
Q ss_pred HHHHHHHHHhHHhhhhhh
Q 006213 622 KDLLSTIAAMQVKECSLR 639 (656)
Q Consensus 622 ~eLL~~va~LqVeE~SLR 639 (656)
+.|-.-+-.+.=+|.-|+
T Consensus 630 r~l~~F~~d~~EeEaWlk 647 (2473)
T KOG0517|consen 630 RRLWQFLWDVEEEEAWLK 647 (2473)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777766666666666554
No 48
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=48.35 E-value=1.7e+02 Score=31.56 Aligned_cols=72 Identities=17% Similarity=0.229 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhhhhHHHHhhhhhhhhhHHHHHHHHHh
Q 006213 481 AQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQMTFLEESALMDRDYSSSLLGAIEALRA 554 (656)
Q Consensus 481 ~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LE~W~~LE~ehsssLs~a~eAL~A 554 (656)
.+....+++|-++-..-.+|-..+..|+.||++.++-++-.. +--=.|+|+...||.+...-+..-++++.+
T Consensus 176 ~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq--~vRPAfmdEyEklE~EL~~lY~~Y~~kfRN 247 (267)
T PF10234_consen 176 QQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ--SVRPAFMDEYEKLEEELQKLYEIYVEKFRN 247 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566678888888888999999999999998876655322 223359999999999987666666666554
No 49
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=47.10 E-value=4.3e+02 Score=29.06 Aligned_cols=98 Identities=15% Similarity=0.208 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhH-HHHHHHHhhhhhHHHHhhhhhhhhhHHHHHHHHHhccccccccC
Q 006213 485 NAERSLYNAWIASSRLRESVRTKRTELQLLKQNLK-LTSILKSQMTFLEESALMDRDYSSSLLGAIEALRASTLRLPVVG 563 (656)
Q Consensus 485 ~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~K-L~~IL~~Qm~~LE~W~~LE~ehsssLs~a~eAL~AatlRLPv~~ 563 (656)
..-.+|-||-....+|=..+..+|.||++.++.+. |.+|=-. |.+++...|.+..-
T Consensus 123 ~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~---~MdEyE~~EeeLqk-------------------- 179 (338)
T KOG3647|consen 123 SSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPA---HMDEYEDCEEELQK-------------------- 179 (338)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH---HHHHHHHHHHHHHH--------------------
Confidence 34467888888899999999999999999887653 5554333 44666666655331
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006213 564 GARADFQNVKDAISSAVDVMQAMASSICLLLSKAGEVNSLVSELSNVSAKEHALLGQCKDLLSTIAA 630 (656)
Q Consensus 564 GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~LvsELA~Va~qE~~lLeEC~eLL~~va~ 630 (656)
-...++-+.+..++|-++|-..+.-|....+|.++-|-.|..
T Consensus 180 -------------------------ly~~Y~l~f~nl~yL~~qldd~~rse~~rqeeaensm~~i~e 221 (338)
T KOG3647|consen 180 -------------------------LYQRYFLRFHNLDYLKSQLDDRTRSEPIRQEEAENSMPFIPE 221 (338)
T ss_pred -------------------------HHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHhcchhhHH
Confidence 122345567778888888888888899888888887766654
No 50
>PLN02939 transferase, transferring glycosyl groups
Probab=46.98 E-value=4.5e+02 Score=33.28 Aligned_cols=153 Identities=18% Similarity=0.201 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhhhh----HHHHhhhhhhhhhHHH
Q 006213 472 NARANAALSAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQMTFL----EESALMDRDYSSSLLG 547 (656)
Q Consensus 472 NARAeaa~~~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~L----E~W~~LE~ehsssLs~ 547 (656)
-||..|.-..++.-.||--..--+.|.+||-+-+.-|+++-.. +.-=..||..|+.-| -.=+..|.-+.++|+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (977)
T PLN02939 149 QARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQ--EKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSK 226 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhh--ccccchhhHHHHHHHhhhhhccccccccccccHHH
Confidence 3677777777888888876666677777776665555544221 111223444443221 1112222223333333
Q ss_pred HHHHHHhccccccccCCcccchHHHHHHHHHHHHHHH-----------------HHHH---------------HHHHhhh
Q 006213 548 AIEALRASTLRLPVVGGARADFQNVKDAISSAVDVMQ-----------------AMAS---------------SICLLLS 595 (656)
Q Consensus 548 a~eAL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq-----------------~i~s---------------si~~llp 595 (656)
-...|+---.- .|.|++.+|..|..-.+.-+ ++++ -+..+..
T Consensus 227 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (977)
T PLN02939 227 ELDVLKEENML------LKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWE 300 (977)
T ss_pred HHHHHHHHhHH------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHH
Confidence 33333221111 13444444444433322211 1111 1244888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006213 596 KAGEVNSLVSELSNVSAKEHALLGQCKDLLSTIAAMQ 632 (656)
Q Consensus 596 Kvee~~~LvsELA~Va~qE~~lLeEC~eLL~~va~Lq 632 (656)
|||....|+.-.++-+.+--..|++-+||=..+-.|+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (977)
T PLN02939 301 KVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLE 337 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 9999998888888888888888888888887777765
No 51
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=45.53 E-value=76 Score=29.48 Aligned_cols=34 Identities=38% Similarity=0.462 Sum_probs=29.1
Q ss_pred HHHHHHHhHHHHHHHHHHhHHHHHHHHhhhhhHH
Q 006213 500 LRESVRTKRTELQLLKQNLKLTSILKSQMTFLEE 533 (656)
Q Consensus 500 LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LE~ 533 (656)
|...|..||.||+-|++-..|-.-|..||.-|++
T Consensus 2 l~~ri~eKk~ELe~L~~l~~lS~~L~~qle~L~~ 35 (103)
T PF08654_consen 2 LQARIAEKKAELEALKQLRDLSADLASQLEALSE 35 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456889999999999999999999999987754
No 52
>PRK10304 ferritin; Provisional
Probab=44.88 E-value=3.2e+02 Score=26.95 Aligned_cols=87 Identities=14% Similarity=0.163 Sum_probs=50.2
Q ss_pred HhhhhhhhhhHHHHHHHHHhccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 006213 535 ALMDRDYSSSLLGAIEALRASTLRLPVVGGARADFQNVKDAISSAVDVMQAMASSICLLLSKAGEVNSLVSELSNVSAKE 614 (656)
Q Consensus 535 ~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~LvsELA~Va~qE 614 (656)
+.=|++|+.-+-.-+..+.... .++-......+..++.+++..+.+.=..+.. .+.+|..++.+|
T Consensus 47 s~EE~~HA~kl~~~i~~rgg~~-~~~~i~~p~~~~~s~~e~~~~~l~~E~~vt~--------------~i~~l~~~A~~~ 111 (165)
T PRK10304 47 AQEEMTHMQRLFDYLTDTGNLP-RINTVESPFAEYSSLDELFQETYKHEQLITQ--------------KINELAHAAMTN 111 (165)
T ss_pred HHHHHHHHHHHHHHHHHcCCCe-eeCCCCCCccccCCHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHc
Confidence 4457788877777766665533 3433334456777788888877776554444 455555555555
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhh
Q 006213 615 HALLGQCKDLLSTIAAMQVKECSL 638 (656)
Q Consensus 615 ~~lLeEC~eLL~~va~LqVeE~SL 638 (656)
+.. ...++|.-.-.=||||..+
T Consensus 112 ~D~--~t~~fl~~fl~EQveEe~~ 133 (165)
T PRK10304 112 QDY--PTFNFLQWYVSEQHEEEKL 133 (165)
T ss_pred CCH--hHHHHHHHHHHHHHHHHHH
Confidence 554 3444454444445555444
No 53
>smart00055 FCH Fes/CIP4 homology domain. Alignment extended from original report. Highly alpha-helical. Also known as the RAEYL motif or the S. pombe Cdc15 N-terminal domain.
Probab=43.56 E-value=2e+02 Score=24.32 Aligned_cols=56 Identities=18% Similarity=0.328 Sum_probs=37.4
Q ss_pred hhhhhHHHHhhhhhhhhhHHHHHHHHHhccccccccCCcccchHHHHHHHHHHHHHHHHHHHH
Q 006213 527 QMTFLEESALMDRDYSSSLLGAIEALRASTLRLPVVGGARADFQNVKDAISSAVDVMQAMASS 589 (656)
Q Consensus 527 Qm~~LE~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ss 589 (656)
=+.|+.+=+.+|.+|+..|..+...+... .....+...++.|....++-++.|+..
T Consensus 28 ~~~f~~~Ra~iE~eYak~L~kL~~~~~~~-------~~~~~~~~s~~~aw~~~~~e~~~~a~~ 83 (87)
T smart00055 28 LKKFIRERAKIEEEYAKKLQKLSKKLRAV-------RDTESEYGSLSKSWEVLLSETDALAKQ 83 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------CCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 35688888999999999999998774321 111234446777777666666666543
No 54
>PRK11637 AmiB activator; Provisional
Probab=41.97 E-value=5.3e+02 Score=28.70 Aligned_cols=37 Identities=11% Similarity=0.053 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 006213 482 QRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNL 518 (656)
Q Consensus 482 q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~ 518 (656)
+....+..|=.+...|.+|...+...+-+|..++..+
T Consensus 90 ~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 90 KLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555555666666655555555555544443
No 55
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=40.71 E-value=3.9e+02 Score=26.83 Aligned_cols=82 Identities=11% Similarity=-0.057 Sum_probs=44.2
Q ss_pred hhhHHHHhhhhhhhhhHHHHHHHHHhccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 006213 529 TFLEESALMDRDYSSSLLGAIEALRASTLRLPVVGGARADFQNVKDAISSAVDVMQAMASSICLLLSKAGEVNSLVSELS 608 (656)
Q Consensus 529 ~~LE~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~LvsELA 608 (656)
+-+..|+.+|.+-..+|..+.++......- +..-+..+...+.+-|..-+...++|...+..=--|..+-..+..+|.
T Consensus 56 ~~~~~ls~~E~~L~~~L~~~~~~~~~~~~~--~~~l~~~~~~~f~e~Lkey~~y~~svk~~l~~R~~~q~~~e~~~e~L~ 133 (200)
T cd07624 56 PIFQLWSASETELAPLLEGVSSAVERCTAA--LEVLLSDHEFVFLPPLREYLLYSDAVKDVLKRRDQFQIEYELSVEELN 133 (200)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777666666666665544322 222233333445555666666666666555555555555555555555
Q ss_pred HHHH
Q 006213 609 NVSA 612 (656)
Q Consensus 609 ~Va~ 612 (656)
..-.
T Consensus 134 ~k~~ 137 (200)
T cd07624 134 KKRL 137 (200)
T ss_pred HHHH
Confidence 4443
No 56
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=40.00 E-value=2.7e+02 Score=24.69 Aligned_cols=103 Identities=16% Similarity=0.230 Sum_probs=68.4
Q ss_pred hhhHHHHhhhhhhhhhHHHHHHHHHhccccccc--cCCccc-chHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH-HHHH
Q 006213 529 TFLEESALMDRDYSSSLLGAIEALRASTLRLPV--VGGARA-DFQNVKDAISSAVDVMQAMASSICLLLSKAGEV-NSLV 604 (656)
Q Consensus 529 ~~LE~W~~LE~ehsssLs~a~eAL~AatlRLPv--~~GAka-D~~slk~AL~sAvdvMq~i~ssi~~llpKvee~-~~Lv 604 (656)
.++++.+.-|.+|..-+..-+..|-....-=++ ..-... ...++.++|..+++.-..+...+..+.-.+++. +...
T Consensus 35 ~~~~~~a~e~~~h~~~l~e~i~~lgg~p~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~l~~~a~~~~D~~t 114 (142)
T PF00210_consen 35 KFFQDQAEEEREHADELAERILMLGGKPSGSPVEIPEIPKPPEWTDPREALEAALEDEKEIIEEYRELIKLAEKEGDPET 114 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTS-SSTSHHHHHHHHSSSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHhhhhhccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 367778888888888887777776541111110 000000 024788999999999999999999888888875 3333
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 006213 605 SE-LSNVSAKEHALLGQCKDLLSTIAAM 631 (656)
Q Consensus 605 sE-LA~Va~qE~~lLeEC~eLL~~va~L 631 (656)
.. |.....+|...+.++.++|..+..|
T Consensus 115 ~~~~~~~l~~~~~~~~~l~~~l~~l~~~ 142 (142)
T PF00210_consen 115 ADFLDEFLEEEEKHIWMLQAHLTNLKRM 142 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 33 4556677778888888888877654
No 57
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=39.11 E-value=3.7e+02 Score=28.94 Aligned_cols=155 Identities=15% Similarity=0.107 Sum_probs=77.1
Q ss_pred hhhhhhhhhcchhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhhh
Q 006213 454 DAHLLRLFHNRLLQWRFVNARANAALSAQRLN---AERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQMTF 530 (656)
Q Consensus 454 d~HqLRLLhNRlLQWRFaNARAeaa~~~q~~~---AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~ 530 (656)
++|+|.=|-|.| -.==+.-|.+|-.|..+ =-+.|..-...|++|++-|.+- ++-+-|...-|.+|+..|-.+
T Consensus 72 ~~~~LeeliNkW---s~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~v--k~~qkrLdq~L~~I~sqQ~EL 146 (254)
T KOG2196|consen 72 TYKTLEELINKW---SLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKV--KLDQKRLDQELEFILSQQQEL 146 (254)
T ss_pred hHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHH
Confidence 456666555543 22222333333333222 1223333334578998887654 455555666788999888765
Q ss_pred hHHHHhhhhhhhhhHHHHHHHHHhccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 006213 531 LEESALMDRDYSSSLLGAIEALRASTLRLPVVGGARADFQNVKDAISSAVDVMQAMASSICLLLSKAGEVNSLVSELSNV 610 (656)
Q Consensus 531 LE~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~LvsELA~V 610 (656)
-+-...||.+...-..... --.+|++-+ ++..+|+.|-+-+..+-.-+.++-.-+-+....
T Consensus 147 E~~L~~lE~k~~~~~g~~~--------------~~~~D~eR~-----qty~~a~nidsqLk~l~~dL~~ii~~lN~~~~~ 207 (254)
T KOG2196|consen 147 EDLLDPLETKLELQSGHTY--------------LSRADVERE-----QTYKMAENIDSQLKRLSEDLKQIIKSLNTMSKT 207 (254)
T ss_pred HHHHHHHHHHHhccccchh--------------hhhhhHHHH-----HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCc
Confidence 5555666665432111111 123555543 445556665555544433333322222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 006213 611 SAKEHALLGQCKDLLSTIAAMQ 632 (656)
Q Consensus 611 a~qE~~lLeEC~eLL~~va~Lq 632 (656)
+-.-...++-|.-|++....||
T Consensus 208 ~d~t~~~~qi~Kilnah~~sLq 229 (254)
T KOG2196|consen 208 VDKTDPIIQIEKILNAHMDSLQ 229 (254)
T ss_pred cccCCchHHHHHHHHHHHHHHH
Confidence 3333346666777777777776
No 58
>PF05802 EspB: Enterobacterial EspB protein
Probab=39.03 E-value=5.7e+02 Score=28.20 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=37.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 006213 567 ADFQNVKDAISSAVDVMQAMASSICLLLSKAGEVNSLVSELSNVSAK 613 (656)
Q Consensus 567 aD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~LvsELA~Va~q 613 (656)
=..+.|.+++..|.++||.|....-..-.++.++..-|.+-|+.+.+
T Consensus 154 kyaEsl~d~~~KAseiMQQim~t~T~Aa~r~s~v~ddv~~~a~~as~ 200 (317)
T PF05802_consen 154 KYAESLADAMEKASEIMQQIMATATKAASRTSGVADDVATSAQKASQ 200 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34567899999999999999999999999988887766655544443
No 59
>PF06070 Herpes_UL32: Herpesvirus large structural phosphoprotein UL32; InterPro: IPR010340 The large phosphorylated protein (UL32-like) of herpes viruses is the polypeptide most frequently reactive in immuno-blotting analyses with antisera when compared with other viral proteins [].; GO: 0005198 structural molecule activity
Probab=38.56 E-value=33 Score=41.78 Aligned_cols=82 Identities=15% Similarity=0.087 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhhhhHHHHhhhhhhhhhH
Q 006213 468 WRFVNARANAALSAQRL--NAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQMTFLEESALMDRDYSSSL 545 (656)
Q Consensus 468 WRFaNARAeaa~~~q~~--~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LE~W~~LE~ehsssL 545 (656)
|-|||=|++.++...+. .|++++|.. ++.+|++--.+ .=-+.---.||.++=+-=|.....|..||..+..-+
T Consensus 153 ~~FVNLr~~d~~~le~NL~~a~~NM~~~--~~l~l~~~~~~---N~~LVn~~NKLvYLGrli~av~~SW~~Le~kcl~rI 227 (839)
T PF06070_consen 153 IDFVNLRAEDVQELEENLRAARSNMFWY--TPLKLNLDRHE---NGPLVNAINKLVYLGRLIVAVSTSWEELEEKCLSRI 227 (839)
T ss_pred cceeecCHHHHHHHHHHHHHHHhccEEE--Eeeeccccccc---CccHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55999999998876554 455554432 22222111000 000111235777777777888899999999998887
Q ss_pred HHHHHHHHh
Q 006213 546 LGAIEALRA 554 (656)
Q Consensus 546 s~a~eAL~A 554 (656)
.++-..|.-
T Consensus 228 ~el~~~L~~ 236 (839)
T PF06070_consen 228 NELCKRLVK 236 (839)
T ss_pred HHHHHHHHH
Confidence 777666643
No 60
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=37.43 E-value=4.9e+02 Score=26.96 Aligned_cols=99 Identities=19% Similarity=0.227 Sum_probs=63.3
Q ss_pred HHHHHHHhHHHHHHHHhhhhhHHHHhhhhhhhhhHHHHHHHHHhccccccccCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 006213 511 LQLLKQNLKLTSILKSQMTFLEESALMDRDYSSSLLGAIEALRASTLRLPVVGGARADFQNVKDAISSAVDVMQAMASSI 590 (656)
Q Consensus 511 Lq~lkq~~KL~~IL~~Qm~~LE~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi 590 (656)
|+++|+-++. ++.=..||.+=+.||.+|+-.|..++........+ | + .....+..++..-+..++.|...-
T Consensus 11 l~rlK~~~~~---~ke~~~FlkkRa~iEeeYak~L~KLak~~~~~~~~-~---~--~~~gs~~~a~~~il~~~e~lA~~h 81 (234)
T cd07652 11 LDRLKQSIAS---AKEFATFLKKRAAIEEEHARGLKKLARTTLDTYKR-P---D--HKQGSFSNAYHSSLEFHEKLADNG 81 (234)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-C---C--CCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4455554443 33445688888999999999999998887655432 0 1 112345556666666666666665
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 006213 591 CLLLSKAGEVNSLVSELSNVSAKEHALL 618 (656)
Q Consensus 591 ~~llpKvee~~~LvsELA~Va~qE~~lL 618 (656)
..|.-.+.+|..-+..|+.-..+++..+
T Consensus 82 ~~~a~~L~~~~~eL~~l~~~~e~~RK~~ 109 (234)
T cd07652 82 LRFAKALNEMSDELSSLAKTVEKSRKSI 109 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555667666777777777766643
No 61
>PF01865 PhoU_div: Protein of unknown function DUF47; InterPro: IPR018445 This family includes prokaryotic proteins of unknown function, as well as a protein annotated as the pit accessory protein from Rhizobium meliloti (Sinorhizobium meliloti) (O30498 from SWISSPROT). However, the function of this protein is also unknown (Pit stands for Phosphate transport) [].; PDB: 2OLT_C 2IIU_C 3L39_A.
Probab=36.80 E-value=2.1e+02 Score=28.37 Aligned_cols=92 Identities=17% Similarity=0.213 Sum_probs=44.2
Q ss_pred hHHHHhhhhhhhhhHHHHHHHHHhccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHH
Q 006213 531 LEESALMDRDYSSSLLGAIEALRASTLRLPVVGGARADFQNVKDAISSAVDVMQAMASSICLLLSKA-GEVNSLVSELSN 609 (656)
Q Consensus 531 LE~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKv-ee~~~LvsELA~ 609 (656)
+++-..+|.+=-.-...+...|.. +.-+|+ -+-|+..+...|...+|.|+.+..-+..+-..+ +++...+.+|+.
T Consensus 46 ~~~i~~lE~~aD~i~~~i~~~L~~-~fitP~---dRedi~~L~~~lD~I~d~i~~~a~~l~~~~~~~~~~~~~~~~~l~~ 121 (214)
T PF01865_consen 46 LEEIKELEHEADEIKREIREELYK-SFITPF---DREDILRLISSLDDIADYIEDAAKRLSLYKVEIPEELREEFQELAE 121 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--SS-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHT----CCGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hccCCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHH
Confidence 344444444333333333333333 333454 355666666666666666666665544333211 455556666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006213 610 VSAKEHALLGQCKDLLS 626 (656)
Q Consensus 610 Va~qE~~lLeEC~eLL~ 626 (656)
++.+.-..|.+|-+.|.
T Consensus 122 ~~~~~~~~l~~~i~~l~ 138 (214)
T PF01865_consen 122 IVVEAIEELVEAIEELK 138 (214)
T ss_dssp HHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66555555555544443
No 62
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=36.40 E-value=1.7e+02 Score=35.29 Aligned_cols=19 Identities=47% Similarity=0.445 Sum_probs=14.7
Q ss_pred HHhHHHHHHHHhhhhhHHH
Q 006213 516 QNLKLTSILKSQMTFLEES 534 (656)
Q Consensus 516 q~~KL~~IL~~Qm~~LE~W 534 (656)
|-.+|..|+..|..||++-
T Consensus 5 ql~qlt~i~~~~~~~L~~~ 23 (683)
T PF08580_consen 5 QLSQLTSILLPIALYLSES 23 (683)
T ss_pred HHHHHHhcccchHHHHHHH
Confidence 4567888888888888773
No 63
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=35.53 E-value=3.4e+02 Score=26.01 Aligned_cols=56 Identities=11% Similarity=0.257 Sum_probs=32.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006213 567 ADFQNVKDAISSAVDVMQAMASSICLLLSKAGEVNSLVSELSNVSAKEHALLGQCK 622 (656)
Q Consensus 567 aD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~LvsELA~Va~qE~~lLeEC~ 622 (656)
..++.....+....+.+..+...+..+...++++...+.++...+.+-...+++-.
T Consensus 114 ~~~~~~~~~i~~~~~~~~~~~~~l~~i~~~~~~i~~~i~~i~~~~~~~~~~~~~i~ 169 (213)
T PF00015_consen 114 ESMEESREQIEEGSESVEETSESLEEIAESVEEISDSIEEISESAEEQSESIEQIN 169 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcchhhhhhhcccchhcchhhhhhhhhhhHHhhhhHHHHhhHHHHHHHHHHHH
Confidence 34455555555556666666666666666666666666666666655554444433
No 64
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=35.15 E-value=5.6e+02 Score=27.01 Aligned_cols=98 Identities=17% Similarity=0.251 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhhhhHHHHhhhhhhhhhHHHHHHHHHhccccccccCCcccch
Q 006213 490 LYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQMTFLEESALMDRDYSSSLLGAIEALRASTLRLPVVGGARADF 569 (656)
Q Consensus 490 Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LE~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~ 569 (656)
|=+-|..|.+-|+.|.-+|+.+...|..+|=... ..+++.
T Consensus 128 le~dik~i~k~RKkLe~rRLdyD~~K~r~~kAk~---------------------------------------~~~~~~- 167 (229)
T cd07616 128 IEGDYKTITKERKLLQNKRLDLDAAKTRLKKAKV---------------------------------------AEARAA- 167 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---------------------------------------chhhcc-
Confidence 3345778888888888888888777765431100 011110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006213 570 QNVKDAISSAVDVMQAMASSICLLLSKAGEV-NSLVSELSNVSAKEHALLGQCKDLLSTIA 629 (656)
Q Consensus 570 ~slk~AL~sAvdvMq~i~ssi~~llpKvee~-~~LvsELA~Va~qE~~lLeEC~eLL~~va 629 (656)
+.+.|..|.|=++.-.-....++-.+.+. ...+.+|...+.-+.....+|.++|..+.
T Consensus 168 --~e~elr~ae~efees~E~a~~~m~~i~~~~~e~~~~L~~lv~AQl~Yh~~~~e~L~~L~ 226 (229)
T cd07616 168 --AEQELRITQSEFDRQAEITRLLLEGISSTHAHHLRCLNDFVEAQMTYYAQCYQYMLDLQ 226 (229)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12223333333333222222233333343 34788999999999999999999998764
No 65
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=34.46 E-value=6.1e+02 Score=27.20 Aligned_cols=138 Identities=17% Similarity=0.029 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhhhhHHHHhhhhhhhhhHHHHHHHHHhccccc
Q 006213 480 SAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQMTFLEESALMDRDYSSSLLGAIEALRASTLRL 559 (656)
Q Consensus 480 ~~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LE~W~~LE~ehsssLs~a~eAL~AatlRL 559 (656)
...+..||++|.-+=..+..-- .-.++.+..++.-.|++ ..-...+.|..+-..|..+..-=++-|.-....
T Consensus 41 ~~~~a~~E~klsilerAL~~np---~~~~L~l~~l~~~~~~~----~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~- 112 (321)
T PF08424_consen 41 AERRALAERKLSILERALKHNP---DSERLLLGYLEEGEKVW----DSEKLAKKWEELLFKNPGSPELWREYLDFRQSN- 112 (321)
T ss_pred hhHHHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH-
Confidence 4455667777655544444421 22233333333333333 444567889999999987766666666655443
Q ss_pred cccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006213 560 PVVGGARADFQNVKDAISSAVDVMQAMASSICLLLSKAGEVNSLVSELSNVSAKEHALLGQCKDLLSTIAAMQ 632 (656)
Q Consensus 560 Pv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~LvsELA~Va~qE~~lLeEC~eLL~~va~Lq 632 (656)
.+...+..+.++...|++.|..+.... .....+...+-..+..|.-+=-..|.+|+-.=.+++.+|
T Consensus 113 ----~~~f~v~~~~~~y~~~l~~L~~~~~~~---~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Q 178 (321)
T PF08424_consen 113 ----FASFTVSDVRDVYEKCLRALSRRRSGR---MTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQ 178 (321)
T ss_pred ----hccCcHHHHHHHHHHHHHHHHHhhccc---cccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHH
Confidence 566778899999999998888887765 222233333334444444444455666665555666666
No 66
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=34.41 E-value=7.7e+02 Score=30.56 Aligned_cols=35 Identities=26% Similarity=0.216 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH
Q 006213 487 ERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLT 521 (656)
Q Consensus 487 E~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~ 521 (656)
|..--+.-.++-+|+....++=.|||+++|.+|++
T Consensus 155 ee~~~~~eer~~kl~~~~qe~naeL~rarqreemn 189 (916)
T KOG0249|consen 155 EEHSGNIEERTRKLEEQLEELNAELQRARQREKMN 189 (916)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555677777777777777888877776653
No 67
>cd07678 F-BAR_FCHSD1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 1 (FCHSD1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 1 (FCHSD1) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=34.38 E-value=5.9e+02 Score=27.36 Aligned_cols=76 Identities=12% Similarity=0.053 Sum_probs=38.8
Q ss_pred HHHHHHHHhhhhhHH-------HHhhhhhhhhhHHHHHHHHHhcccc-ccccCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 006213 519 KLTSILKSQMTFLEE-------SALMDRDYSSSLLGAIEALRASTLR-LPVVGGARADFQNVKDAISSAVDVMQAMASSI 590 (656)
Q Consensus 519 KL~~IL~~Qm~~LE~-------W~~LE~ehsssLs~a~eAL~AatlR-LPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi 590 (656)
+|..-....+.+||+ =+.||.+|+..|..++.-...-.-. -+=...-.-.+.++.+++..-.+....-+-+.
T Consensus 9 ~L~~~~~~~~~~le~~~~f~k~R~~iE~eYa~~L~~L~k~~~~k~~~~~~~e~~~~~~~~s~~~~~~e~~~~a~Q~~~~~ 88 (263)
T cd07678 9 ILQTKQQRDAELLEDIRSYSKQRAAIEREYGQALQRLASQFLKRDWHRGGNETEMDRSVRTVWGAWREGTAATGQGRVTR 88 (263)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCchhhhhccccchHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444 4889999999999988877543311 00000001133344555555555554444444
Q ss_pred HHhh
Q 006213 591 CLLL 594 (656)
Q Consensus 591 ~~ll 594 (656)
+.++
T Consensus 89 ~~~~ 92 (263)
T cd07678 89 LEAY 92 (263)
T ss_pred HHHH
Confidence 4444
No 68
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=34.19 E-value=3.9e+02 Score=30.66 Aligned_cols=45 Identities=22% Similarity=0.183 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhhhhHHHHhh
Q 006213 492 NAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQMTFLEESALM 537 (656)
Q Consensus 492 ~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LE~W~~L 537 (656)
.+-..-.+.|..|.+||.+.++.|.+.+| .||+.++.+++.+-.+
T Consensus 319 ~iL~~f~~~R~~~~~rR~~~~l~k~~~rl-~il~g~~~~i~~id~v 363 (445)
T cd00187 319 EILQEFLDHRLEVYTRRKEYELGKAEARL-HILEGLLKAILNIDEV 363 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHH
Confidence 33444567899999999999888877776 5778888888777544
No 69
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=34.10 E-value=5e+02 Score=31.05 Aligned_cols=66 Identities=9% Similarity=0.185 Sum_probs=49.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhH
Q 006213 567 ADFQNVKDAISSAVDVMQAMASSICLLLS-KAGEVNSLVSELSNVSAKE-------HALLGQCKDLLSTIAAMQ 632 (656)
Q Consensus 567 aD~~slk~AL~sAvdvMq~i~ssi~~llp-Kvee~~~LvsELA~Va~qE-------~~lLeEC~eLL~~va~Lq 632 (656)
...+.|...++..-+-|+.+...+..-+- .|++++.++.+||++-.+= ..||||=.+||..++.+-
T Consensus 137 ~~A~~La~~fn~~~~~L~~~~~~vn~qi~~~V~~IN~l~~qIA~LN~qI~~~~g~pNdLlDqRD~ll~eLS~~v 210 (626)
T PRK08871 137 EKAKLISQTLNDFHETVRQQKDVTNKKLDLGVERINQIALEIRDIHRLMMRTPGPHNDLMDQHEKLVKELSQYT 210 (626)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHhhc
Confidence 44556777777777777777776655444 6888888888888876543 379999999999998874
No 70
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=33.91 E-value=5.8e+02 Score=26.82 Aligned_cols=39 Identities=26% Similarity=0.282 Sum_probs=28.8
Q ss_pred HHHHHHhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006213 587 ASSICLLLSK-AGEVNSLVSELSNVSAKEHALLGQCKDLLSTIA 629 (656)
Q Consensus 587 ~ssi~~llpK-vee~~~LvsELA~Va~qE~~lLeEC~eLL~~va 629 (656)
...+.+|+.. + .-+.+|...+.-+-....+|.++|..+.
T Consensus 174 ~~~M~n~l~~e~----e~~~~L~~fveAQl~Yh~qa~eiL~~l~ 213 (223)
T cd07613 174 ESSMFNLLEMDI----EQVSQLSALVQAQLEYHKQATQILQQVT 213 (223)
T ss_pred HHHHHHHHHcCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445544 3 4456899999999999999999998764
No 71
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=33.83 E-value=2.6e+02 Score=34.14 Aligned_cols=41 Identities=27% Similarity=0.238 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhhh
Q 006213 489 SLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQMTF 530 (656)
Q Consensus 489 ~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~ 530 (656)
.|..+-....+.|..+.+||++.++.|.+.+|. ||++.+..
T Consensus 338 ~~~~il~~~~~~r~~~~~~r~~~~l~~~~~~~~-~~~g~~~~ 378 (800)
T TIGR01063 338 NLKELLEAFVEHRKDVITRRTIFELRKAEERAH-ILEGLLIA 378 (800)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 344455555678999999999998888887765 56666553
No 72
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=33.67 E-value=6.1e+02 Score=26.94 Aligned_cols=79 Identities=14% Similarity=0.055 Sum_probs=56.3
Q ss_pred hhHHHHhhhhhhhhhHHHHHHHHHhccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 006213 530 FLEESALMDRDYSSSLLGAIEALRASTLRLPVVGGARADFQNVKDAISSAVDVMQAMASSICLLLSKAGEVNSLVSELSN 609 (656)
Q Consensus 530 ~LE~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~LvsELA~ 609 (656)
..-.|+.+|.+-..+|.++..|+...+-.+ ..+++.+.+.+.+.|..-+-..++|...+..=--+-.++..+.-.|+.
T Consensus 97 ~~~lws~~E~~L~~~L~~~a~~~d~~~~~~--~~~~~~l~~~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k 174 (243)
T cd07666 97 IYTLWSASEEELADSLKGMASCIDRCCKAT--DKRMKGLSEQLLPVIHEYVLYSETLMGVIKRRDQIQAELDSKVEALAN 174 (243)
T ss_pred HHHHHhccchhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456799999999999999999988544332 345666777777777777777777777766555555566666666665
Q ss_pred H
Q 006213 610 V 610 (656)
Q Consensus 610 V 610 (656)
.
T Consensus 175 ~ 175 (243)
T cd07666 175 K 175 (243)
T ss_pred h
Confidence 3
No 73
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=32.96 E-value=1.5e+03 Score=31.19 Aligned_cols=98 Identities=14% Similarity=0.161 Sum_probs=77.4
Q ss_pred HHhhhhhHHHHhhhhhhhhhHHHHHHHHHhccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 006213 525 KSQMTFLEESALMDRDYSSSLLGAIEALRASTLRLPVVGGARADFQNVKDAISSAVDVMQAMASSICLLLSKAGEVNSLV 604 (656)
Q Consensus 525 ~~Qm~~LE~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~Lv 604 (656)
+..-..|.+|-....+...-+.++...+.+. ..++..+++++..+.+.|+++..--.+|...+++...-+
T Consensus 1438 k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~----------~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~ 1507 (1930)
T KOG0161|consen 1438 KRFEKLLAEWKKKLEKLQAELDAAQRELRQL----------STELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQK 1507 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334578999999999988888877776653 567889999999999999999999999999999999999
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHhH
Q 006213 605 SELSNVS----AKEHALLGQCKDLLSTIAAMQ 632 (656)
Q Consensus 605 sELA~Va----~qE~~lLeEC~eLL~~va~Lq 632 (656)
.|+...+ ...+.+-.||.||=.++..++
T Consensus 1508 ~e~~k~v~elek~~r~le~e~~elQ~aLeElE 1539 (1930)
T KOG0161|consen 1508 DEGGKRVHELEKEKRRLEQEKEELQAALEELE 1539 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988877 345566667777655554443
No 74
>PRK05685 fliS flagellar protein FliS; Validated
Probab=32.76 E-value=2.5e+02 Score=26.58 Aligned_cols=63 Identities=14% Similarity=0.276 Sum_probs=44.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhh---H-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 006213 567 ADFQNVKDAISSAVDVMQAMASSICLLL--SKAGE---V-NSLVSELSN-VSAKEHALLGQCKDLLSTIA 629 (656)
Q Consensus 567 aD~~slk~AL~sAvdvMq~i~ssi~~ll--pKvee---~-~~LvsELA~-Va~qE~~lLeEC~eLL~~va 629 (656)
.|++...++|..|.+++.++.+++..-- +=++. + .++..+|.. ...++.+.|+||..+|..+.
T Consensus 49 ~~~~~~~~~l~ka~~Ii~eL~~sLd~e~ggeiA~~L~~LY~y~~~~L~~A~~~~d~~~l~ev~~il~~Lr 118 (132)
T PRK05685 49 GDIEAKGEYLSKAINIINGLRNSLDMEKGGEVAKNLSALYDYMIRRLLEANLRNDVQAIDEVEGLLREIK 118 (132)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 7888999999999999999988885422 11222 2 344555554 34556788999999988764
No 75
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=32.16 E-value=1.2e+03 Score=29.80 Aligned_cols=32 Identities=19% Similarity=0.161 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 006213 486 AERSLYNAWIASSRLRESVRTKRTELQLLKQN 517 (656)
Q Consensus 486 AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~ 517 (656)
++..+..+-..+.+++..+...+.+++.++.+
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1163)
T COG1196 693 LKNELRSLEDLLEELRRQLEELERQLEELKRE 724 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444433
No 76
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=32.07 E-value=4.9e+02 Score=25.38 Aligned_cols=62 Identities=13% Similarity=0.104 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhh
Q 006213 577 SSAVDVMQAMASSICLLLSKAGEVNSLVSELSNVSAKEHALLGQCKDLLSTIAAMQVKECSL 638 (656)
Q Consensus 577 ~sAvdvMq~i~ssi~~llpKvee~~~LvsELA~Va~qE~~lLeEC~eLL~~va~LqVeE~SL 638 (656)
...-+-++.+...+..+.....++...+.++-.-+..++.-++++.+.+..+..+.-+...|
T Consensus 126 ~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 187 (191)
T PF04156_consen 126 KSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQEL 187 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444443344444444444444444444444444443333333
No 77
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=31.96 E-value=9.4e+02 Score=28.64 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHhHHHHHHH
Q 006213 495 IASSRLRESVRTKRTELQLL 514 (656)
Q Consensus 495 ~~is~LR~sVa~KRieLq~l 514 (656)
..+..|.+.+...+.+++.+
T Consensus 157 ~~~~~Le~e~~~l~~~v~~l 176 (546)
T PF07888_consen 157 KENEQLEEEVEQLREEVERL 176 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443
No 78
>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran
Probab=31.45 E-value=6.4e+02 Score=26.57 Aligned_cols=143 Identities=13% Similarity=0.164 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhHHH-----HHHHHhhhhhHHHHhhhhhh--------hhh---HHHHHHHH--------
Q 006213 497 SSRLRESVRTKRTELQLLKQNLKLT-----SILKSQMTFLEESALMDRDY--------SSS---LLGAIEAL-------- 552 (656)
Q Consensus 497 is~LR~sVa~KRieLq~lkq~~KL~-----~IL~~Qm~~LE~W~~LE~eh--------sss---Ls~a~eAL-------- 552 (656)
+.-|-++...-|.-||++|..+|-. .....|+-|-|....|=..| ..+ ++..+.-|
T Consensus 4 v~~lee~le~d~~~L~k~kk~vkai~~sg~~hv~ne~~~~~~le~lg~~~l~~~~~~~~t~fl~~av~tkel~al~k~L~ 83 (213)
T cd07640 4 AAALEESLEGDQASLQRIKKIVKAIHNSGLNHVENEEQYTEALENLGNSHLSQNNHELSTGFLNLAVFTREVTALFKNLV 83 (213)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777888899999888832 23344444444333332222 111 11122222
Q ss_pred --HhccccccccCCcccchHHHH-HHHHHHHHHHHHHHHHHHHh------hhhhhhH-HHHHHHHHHHHHHHHHHHHHHH
Q 006213 553 --RASTLRLPVVGGARADFQNVK-DAISSAVDVMQAMASSICLL------LSKAGEV-NSLVSELSNVSAKEHALLGQCK 622 (656)
Q Consensus 553 --~AatlRLPv~~GAkaD~~slk-~AL~sAvdvMq~i~ssi~~l------lpKvee~-~~LvsELA~Va~qE~~lLeEC~ 622 (656)
.+.+.-.|+.+=.|.|+..+| +.-..=..+-+.++..+... -||-+++ -..+.|.++....||.+++
T Consensus 84 qn~nniv~fpldsflK~dlr~~K~D~KK~FeK~skDyE~kl~K~ak~~r~k~~~~g~~~~e~eEaae~l~~eRr~Fq--- 160 (213)
T cd07640 84 QNLNNIVSFPLDSLLKGQLRDGRLESKKQMEKAWKDYEAKIGKLEKERREKQKQHGLIRLDMTDTAEDMQRERRNFQ--- 160 (213)
T ss_pred HhhhhhhccchHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHhccccccchhcccccccHHHHHHHHHHHHHHHH---
Confidence 245677899999999999888 44444444444444443322 1111111 1134555555555555443
Q ss_pred HHHHHHHHhHHhhhhhhhhhhhcccccc
Q 006213 623 DLLSTIAAMQVKECSLRTHILQSERLPA 650 (656)
Q Consensus 623 eLL~~va~LqVeE~SLR~~lIQ~~~~~~ 650 (656)
+|+=|+=|+...||.|+.+.
T Consensus 161 --------l~acdYllkin~iq~KK~~d 180 (213)
T cd07640 161 --------LHMCEYLLKAQESQMKQGPD 180 (213)
T ss_pred --------HHHHHHHHHHhHHHHhhchH
Confidence 56667777777777776544
No 79
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=31.23 E-value=1e+03 Score=28.89 Aligned_cols=122 Identities=17% Similarity=0.147 Sum_probs=67.1
Q ss_pred HHHHHHHHhhhhhHHHHhhhhhhhhhHHHHHHHHHhcc-------ccccccCCc-ccch---------------------
Q 006213 519 KLTSILKSQMTFLEESALMDRDYSSSLLGAIEALRAST-------LRLPVVGGA-RADF--------------------- 569 (656)
Q Consensus 519 KL~~IL~~Qm~~LE~W~~LE~ehsssLs~a~eAL~Aat-------lRLPv~~GA-kaD~--------------------- 569 (656)
|....++.|+..==+|..|-.+|...|..-|+.+-..+ +.-|+.+|. ..|+
T Consensus 109 ~~L~~vK~qveiAmE~~EL~~~vlg~l~~EIe~~~~~vfemeE~R~~Sp~~~~lp~~~Le~Ive~~~~~~~~~~~~~~lP 188 (683)
T PF08580_consen 109 KTLISVKKQVEIAMEWEELWNDVLGDLDNEIEECIRLVFEMEEKRHSSPVRHGLPIFELETIVEEMPSSTNSSNKRFSLP 188 (683)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccCCCcccHHHHHHhccccCCCCcCCcCCC
Confidence 34555666666656666666666666666555543332 333443322 1122
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhh
Q 006213 570 ------QNVKDAISSAVDVMQAMASSICLLLSK-AGEVNSLVSELSNVSAKEHALLGQCKDLLSTIAAMQVKECSLRTHI 642 (656)
Q Consensus 570 ------~slk~AL~sAvdvMq~i~ssi~~llpK-vee~~~LvsELA~Va~qE~~lLeEC~eLL~~va~LqVeE~SLR~~l 642 (656)
+++.+-+..-..=||.|..++ .|||. ++++.......-..+-. .|++.-+.|+..-..|+-+=..||--|
T Consensus 189 tF~~~Desl~~~ll~L~arm~PLraSL-dfLP~Ri~~F~~ra~~~fp~a~e--~L~~r~~~L~~k~~~L~~e~~~LK~EL 265 (683)
T PF08580_consen 189 TFSPQDESLYSSLLALFARMQPLRASL-DFLPMRIEEFQSRAESIFPSACE--ELEDRYERLEKKWKKLEKEAESLKKEL 265 (683)
T ss_pred CCCcHHHHHHHHHHHHHhccchHHHHH-HHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 235555666677799999999 66664 66655554333333322 234455555566666665555555444
Q ss_pred h
Q 006213 643 L 643 (656)
Q Consensus 643 I 643 (656)
|
T Consensus 266 i 266 (683)
T PF08580_consen 266 I 266 (683)
T ss_pred h
Confidence 4
No 80
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=31.03 E-value=1.2e+02 Score=37.21 Aligned_cols=143 Identities=20% Similarity=0.206 Sum_probs=79.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhHHHHHHHHH-------------------
Q 006213 465 LLQWRFVNARANAALSAQRLNAE---------RSLYNAWIASSRLRESVRTKRTELQLLKQ------------------- 516 (656)
Q Consensus 465 lLQWRFaNARAeaa~~~q~~~AE---------~~Ly~~W~~is~LR~sVa~KRieLq~lkq------------------- 516 (656)
-|||-+.|++-...-...+.+-+ .+||..|..|-+||+.-..+-+.-+..-.
T Consensus 510 tLQfLa~~~~r~ds~i~~~~i~a~~~~~k~~~~slf~~w~ei~ql~k~~~~r~~~~~l~~l~~~~~l~~~servlqg~f~ 589 (877)
T KOG1969|consen 510 TLQFLASNVDRRDSSISVKLICAKNVGAKSNSDSLFSWWKEIFQLRKKDRHRSIDEQLYGLLNQVELHGNSERVLQGCFS 589 (877)
T ss_pred HHHHHHHhcccccccchhhhhhhhhhcccccccchHHHHHHHHHHhhcccccchHHHhhhhhhhhhccCchHHHHhhhhc
Confidence 38999999988533222222222 57999999999999876554443222111
Q ss_pred ---HhHH-----------------HHHHHHhhhhhHHHHhhhhhhhhhHHHHHHHHHhccccccccCCcccchHHHHHHH
Q 006213 517 ---NLKL-----------------TSILKSQMTFLEESALMDRDYSSSLLGAIEALRASTLRLPVVGGARADFQNVKDAI 576 (656)
Q Consensus 517 ---~~KL-----------------~~IL~~Qm~~LE~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~slk~AL 576 (656)
.+++ +..|..||..++.|+.| .|.-.+--...-|.|...++++.---+-+ ....-|
T Consensus 590 ~~~~~~~~D~~i~~~~~~s~WL~F~D~l~~~~~s~qn~eLl--rY~~~~~l~fh~l~at~~~~~i~~p~~~q--~~~~kl 665 (877)
T KOG1969|consen 590 IFLRLKYSDLGIGKPANASDWLFFHDLLYQSMYSHQNWELL--RYSPSVPLHFHQLFATIANKRIIRPKNSQ--YEQRKL 665 (877)
T ss_pred cccccccccccccchhhhhhHHHhhhHHHHHHHhcCCeeec--ccccchhHHHHHHhcccCCcccCCCchhH--HHHHHH
Confidence 1111 23444555556666555 35555555566677777777776554433 333334
Q ss_pred HHHHHHHHHHHHHH----HHhhhhhhhHHHHHHHHHHHH
Q 006213 577 SSAVDVMQAMASSI----CLLLSKAGEVNSLVSELSNVS 611 (656)
Q Consensus 577 ~sAvdvMq~i~ssi----~~llpKvee~~~LvsELA~Va 611 (656)
..+-+.++++.+.| ..++++-+-...+|++|-.+.
T Consensus 666 ~~~~e~i~s~is~i~s~~~~~~~~ksllldli~~iL~il 704 (877)
T KOG1969|consen 666 KRANEDIVSLISRIISYQGPLAASKSLLLDLIFEILPIL 704 (877)
T ss_pred HHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHhc
Confidence 44444444444433 334445555566666666554
No 81
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=31.00 E-value=3.3e+02 Score=23.70 Aligned_cols=52 Identities=10% Similarity=0.072 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006213 580 VDVMQAMASSICLLLSKAGEVNSLVSELSNVSAKEHALLGQCKDLLSTIAAM 631 (656)
Q Consensus 580 vdvMq~i~ssi~~llpKvee~~~LvsELA~Va~qE~~lLeEC~eLL~~va~L 631 (656)
..+|.-+...|..+--++.++..--.+|...+.+|..-|++|.+.......+
T Consensus 6 ~Gl~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~ 57 (92)
T PF14712_consen 6 EGLLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPF 57 (92)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 4488888999999999999999999999999999999999999977655444
No 82
>PF13339 AATF-Che1: Apoptosis antagonizing transcription factor
Probab=30.95 E-value=2.9e+02 Score=25.77 Aligned_cols=29 Identities=17% Similarity=0.127 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006213 477 AALSAQRLNAERSLYNAWIASSRLRESVR 505 (656)
Q Consensus 477 aa~~~q~~~AE~~Ly~~W~~is~LR~sVa 505 (656)
..+......+++.++.+|..+.+||....
T Consensus 49 ~~~~~~~~~~~~~~~~ll~~l~~Lq~~L~ 77 (131)
T PF13339_consen 49 EEFQEALEEAEKALKKLLDSLLELQEELL 77 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555667889999999999999999888
No 83
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=30.86 E-value=9.2e+02 Score=28.20 Aligned_cols=112 Identities=21% Similarity=0.186 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH--HHHHHhhhhh-HHHHhhhhhhhhhHHHHHHHHHhcccc
Q 006213 482 QRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLT--SILKSQMTFL-EESALMDRDYSSSLLGAIEALRASTLR 558 (656)
Q Consensus 482 q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~--~IL~~Qm~~L-E~W~~LE~ehsssLs~a~eAL~AatlR 558 (656)
+....|+..=.+|..+..||+.-..-|=+|+++++++.-. .|-+..+|+| ++.-++= ...+.-++.|...--+
T Consensus 387 ~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~----~~~~~~i~~l~~~L~~ 462 (560)
T PF06160_consen 387 QLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYF----FDVSDEIEELSDELNQ 462 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH----HHHHHHHHHHHHHHhc
Confidence 4445666677778888888887777777777777665432 3334445544 3332222 2222333444443333
Q ss_pred ccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 006213 559 LPVVGGARADFQNVKDAISSAVDVMQAMASSICLLLSKAGEVNSL 603 (656)
Q Consensus 559 LPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~L 603 (656)
. +.|++.|..-|..|.+.|+.+...+..+.-.+.=+..+
T Consensus 463 ~------pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L~E~~ 501 (560)
T PF06160_consen 463 V------PINMDEVNKQLEEAEDDVETLEEKTEELIDNATLAEQL 501 (560)
T ss_pred C------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 45899999999999999998888887777655444333
No 84
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=30.23 E-value=1.2e+03 Score=29.42 Aligned_cols=80 Identities=19% Similarity=0.374 Sum_probs=52.4
Q ss_pred HHHHHHHhccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006213 547 GAIEALRASTLRLPVVGGARADFQNVKDAISSAVDVMQAMASSICLLLSKAGEVNSLVSELSNVSAKEHALLGQCKDLLS 626 (656)
Q Consensus 547 ~a~eAL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~LvsELA~Va~qE~~lLeEC~eLL~ 626 (656)
.-|+-|++-+.||-+ .+-|.+++|+.|..|.|-++-|+.-...+=-..+.+-.| -|-+++. -+--+++|-++..
T Consensus 393 eQidelKn~if~~e~---~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~L-ke~aegs--rrraIeQcnemv~ 466 (1265)
T KOG0976|consen 393 EQIDELKNHIFRLEQ---GKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVL-KEHAEGS--RRRAIEQCNEMVD 466 (1265)
T ss_pred HHHHHHHHhhhhhhh---ccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHH-HHhhhhh--HhhHHHHHHHHHH
Confidence 445667777777654 467999999999999999888887554333333333222 2223322 2345789999988
Q ss_pred HHHHhH
Q 006213 627 TIAAMQ 632 (656)
Q Consensus 627 ~va~Lq 632 (656)
.|.+++
T Consensus 467 rir~l~ 472 (1265)
T KOG0976|consen 467 RIRALM 472 (1265)
T ss_pred HHHHHh
Confidence 888876
No 85
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=29.71 E-value=5.1e+02 Score=24.84 Aligned_cols=48 Identities=15% Similarity=0.140 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhhhhHHHHhhhhh
Q 006213 493 AWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQMTFLEESALMDRD 540 (656)
Q Consensus 493 ~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LE~W~~LE~e 540 (656)
+-..+.++.+.+....-..+.+..-+++..=+..|..+|--=+.+|.-
T Consensus 21 ~~~~~~~~~~~~~~l~~~~~~i~~~~~~i~~ia~qt~lLalNAsIEAa 68 (213)
T PF00015_consen 21 IQESIEEIAESIEELSESSEDISEILSLINEIAEQTNLLALNASIEAA 68 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhccccc
Confidence 333344444444444444444444444444455555555444444443
No 86
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=29.71 E-value=1.1e+03 Score=28.66 Aligned_cols=33 Identities=15% Similarity=0.142 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 006213 481 AQRLNAERSLYNAWIASSRLRESVRTKRTELQL 513 (656)
Q Consensus 481 ~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~ 513 (656)
.+....|+.+...|..+...++...+.=.+|+.
T Consensus 175 k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~ 207 (670)
T KOG0239|consen 175 KESLKLESDLGDLVTELEHVTNSISELESVLKS 207 (670)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 355667777777887777777777776666655
No 87
>PRK01203 prefoldin subunit alpha; Provisional
Probab=29.59 E-value=85 Score=30.42 Aligned_cols=13 Identities=15% Similarity=0.230 Sum_probs=10.3
Q ss_pred hccccccccCCcc
Q 006213 554 ASTLRLPVVGGAR 566 (656)
Q Consensus 554 AatlRLPv~~GAk 566 (656)
...+-+|+++|+.
T Consensus 48 ~~eiLVPLg~slY 60 (130)
T PRK01203 48 SKELLISIGSGIF 60 (130)
T ss_pred CCeEEEEccCCce
Confidence 3568899999984
No 88
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=29.09 E-value=1.2e+03 Score=29.00 Aligned_cols=151 Identities=17% Similarity=0.181 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhhhhHHHHhhhhhhhhhHHHH
Q 006213 469 RFVNARANAALSAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQMTFLEESALMDRDYSSSLLGA 548 (656)
Q Consensus 469 RFaNARAeaa~~~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LE~W~~LE~ehsssLs~a 548 (656)
|+.+++.++. ...+-..||.+-+.|.+=.-+-+++|++--+.+...-|. .-- -=||...|-.+.-.++...
T Consensus 438 rL~~~~~~~~----~~~v~~~LW~lAl~iEdG~ls~A~~~Lr~AQe~L~eAL~----~gA-s~eEI~rLm~eLR~A~~~y 508 (820)
T PF13779_consen 438 RLERARTDEA----LREVADLLWDLALRIEDGDLSDAERRLRAAQEALREALE----RGA-SDEEIARLMQELREAMQDY 508 (820)
T ss_pred HHHhcCCHHH----HHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHH----cCC-CHHHHHHHHHHHHHHHHHH
Confidence 3334444443 346667899999999886555666654433322222222 111 1267777777777777777
Q ss_pred HHHHHhccccccccC------Cc--c---cchHHHHHHH---------HHHHHHHHHHHHHHHHhhh------hhhhHHH
Q 006213 549 IEALRASTLRLPVVG------GA--R---ADFQNVKDAI---------SSAVDVMQAMASSICLLLS------KAGEVNS 602 (656)
Q Consensus 549 ~eAL~AatlRLPv~~------GA--k---aD~~slk~AL---------~sAvdvMq~i~ssi~~llp------Kvee~~~ 602 (656)
+++|---.-+-|-.. +. . -|++.+-+-| ..|-++|+.|...+.++.. -.+++..
T Consensus 509 m~~LAeq~~~~~~~~~~p~~~~~~~~~~~~dL~~mmd~ie~la~~G~~~~A~q~L~qlq~mmenmq~~~~q~~~~~~~~q 588 (820)
T PF13779_consen 509 MQALAEQAQRNPQQQDQPPDQGNSQMMSQQDLQRMMDRIEELARSGRMDEARQLLEQLQQMMENMQNAQPQQQQQQEMQQ 588 (820)
T ss_pred HHHHHHHhHhCcccccCcccchhhhccCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCchhhHHHHH
Confidence 777765555554432 11 2 2333333322 3466677777777777653 3467888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006213 603 LVSELSNVSAKEHALLGQCKDLLSTI 628 (656)
Q Consensus 603 LvsELA~Va~qE~~lLeEC~eLL~~v 628 (656)
.+.+|.+++.++..|++|....+..-
T Consensus 589 ~m~~L~dl~r~Qq~L~D~tfr~~q~q 614 (820)
T PF13779_consen 589 AMEELGDLLRRQQQLMDETFRQLQEQ 614 (820)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999987766553
No 89
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.87 E-value=7.2e+02 Score=26.30 Aligned_cols=81 Identities=19% Similarity=0.302 Sum_probs=41.6
Q ss_pred HhHHHHHHHHHHhHHHHHHHHhhh-----hhHHHHhhhhhh-----hhhHHHHHHHHHhccccccccCCcccchHHHHHH
Q 006213 506 TKRTELQLLKQNLKLTSILKSQMT-----FLEESALMDRDY-----SSSLLGAIEALRASTLRLPVVGGARADFQNVKDA 575 (656)
Q Consensus 506 ~KRieLq~lkq~~KL~~IL~~Qm~-----~LE~W~~LE~eh-----sssLs~a~eAL~AatlRLPv~~GAkaD~~slk~A 575 (656)
-||+-||.||.+......| .|+. .-.+-..||.-+ ..++..+.+|+++.---+=+ -+|+.+-+-
T Consensus 59 NKR~AlqaLkrKK~~E~qL-~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~h~~mDi-----DkVdd~Mde 132 (221)
T KOG1656|consen 59 NKRMALQALKRKKRYEKQL-AQIDGTLSTIEFQREALENANTNTEVLDAMGSAAKAMKAAHKNMDI-----DKVDDLMDE 132 (221)
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhccCh-----hHHHHHHHH
Confidence 5777778777653322211 2222 112333444333 45666677777765432222 123355555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006213 576 ISSAVDVMQAMASSICL 592 (656)
Q Consensus 576 L~sAvdvMq~i~ssi~~ 592 (656)
|..-.+++++|...|-.
T Consensus 133 I~eQqe~a~eIseAiS~ 149 (221)
T KOG1656|consen 133 IAEQQEVAEEISEAISA 149 (221)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 66666677776666554
No 90
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=28.81 E-value=5.1e+02 Score=27.70 Aligned_cols=21 Identities=33% Similarity=0.371 Sum_probs=15.7
Q ss_pred HHHHHHHHHhccccccccCCc
Q 006213 545 LLGAIEALRASTLRLPVVGGA 565 (656)
Q Consensus 545 Ls~a~eAL~AatlRLPv~~GA 565 (656)
+..+-.-|...+++-|++|-+
T Consensus 262 l~~~~~~l~~~~i~AP~dG~V 282 (423)
T TIGR01843 262 LNKARDRLQRLIIRSPVDGTV 282 (423)
T ss_pred HHHHHHHHhhcEEECCCCcEE
Confidence 445556688999999997654
No 91
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=28.74 E-value=1.1e+03 Score=28.60 Aligned_cols=20 Identities=5% Similarity=0.318 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006213 571 NVKDAISSAVDVMQAMASSI 590 (656)
Q Consensus 571 slk~AL~sAvdvMq~i~ssi 590 (656)
.|...|....|.++.|+.-+
T Consensus 556 ~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 556 KLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444455444444443
No 92
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=28.67 E-value=4.2e+02 Score=23.58 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=12.0
Q ss_pred HHHHHHHHhhhhhHHHHhhhh
Q 006213 519 KLTSILKSQMTFLEESALMDR 539 (656)
Q Consensus 519 KL~~IL~~Qm~~LE~W~~LE~ 539 (656)
+|..+|+.|+.++++...|..
T Consensus 5 ~L~~~L~~~~~~~~~L~~ll~ 25 (143)
T PF05130_consen 5 ELIELLEEQIELLQELLELLE 25 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666655544433
No 93
>PF13514 AAA_27: AAA domain
Probab=28.31 E-value=1.3e+03 Score=29.15 Aligned_cols=140 Identities=11% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhhhhHHHHhhhhhhhhhHHHHHHHHHhccccccccCCcccchHHHHH
Q 006213 495 IASSRLRESVRTKRTELQLLKQNLKLTSILKSQMTFLEESALMDRDYSSSLLGAIEALRASTLRLPVVGGARADFQNVKD 574 (656)
Q Consensus 495 ~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LE~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~slk~ 574 (656)
..+.++..-+...+-++..++.+..-...+..-.+++.+|..|+.+ |.+.--...+..+....++.+..
T Consensus 181 ~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~-----------l~~l~~~~~~p~~~~~~~~~~~~ 249 (1111)
T PF13514_consen 181 QALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAE-----------LAELGEVPDFPEDGAERLEQLEE 249 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----------HHhcCCcCCCChhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhhc
Q 006213 575 AISSAVDVMQAMASSICLLLSKAGEV--NSLVSELSNVSAKEHALLGQCKDLLSTIAAMQVKECSLRTHILQS 645 (656)
Q Consensus 575 AL~sAvdvMq~i~ssi~~llpKvee~--~~LvsELA~Va~qE~~lLeEC~eLL~~va~LqVeE~SLR~~lIQ~ 645 (656)
.+..+..-++.+..-+..+-.+++++ +..+-+.+..+..=...+.+|+.....+..++.+-..++..+-++
T Consensus 250 ~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~~~~~~~~~~~dl~~~~~e~~~~~~~~~~~ 322 (1111)
T PF13514_consen 250 ELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEEQRGEYRKARQDLPRLEAELAELEAELRAL 322 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 94
>PRK00846 hypothetical protein; Provisional
Probab=28.23 E-value=2.9e+02 Score=24.67 Aligned_cols=44 Identities=20% Similarity=0.095 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 006213 477 AALSAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKL 520 (656)
Q Consensus 477 aa~~~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL 520 (656)
..+..+...-|-+|...-..|.+|.+-|+....++.+++..+++
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~ 52 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRH 52 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667778899999999999999999999999888877663
No 95
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=28.22 E-value=6.7e+02 Score=29.86 Aligned_cols=65 Identities=11% Similarity=0.225 Sum_probs=46.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhH
Q 006213 568 DFQNVKDAISSAVDVMQAMASSIC-LLLSKAGEVNSLVSELSNVSAKE----------HALLGQCKDLLSTIAAMQ 632 (656)
Q Consensus 568 D~~slk~AL~sAvdvMq~i~ssi~-~llpKvee~~~LvsELA~Va~qE----------~~lLeEC~eLL~~va~Lq 632 (656)
..+.|...++...+-++.+...+. .+-..|++++.++.||+++-.|= -.||+|=..||..++.+-
T Consensus 147 ~A~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~qIa~LN~qI~~~~~~g~~~ndLlDqRD~ll~eLS~~v 222 (627)
T PRK06665 147 RAQSLGERIHDRYRSLERIRDMANDEIEITVEEINNILRNIADLNEQIVKSQAMGDNPNDLLDRRDLLVDKLSSLI 222 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHhhc
Confidence 345566666666666666666444 34566888888888888776542 359999999999998873
No 96
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=27.40 E-value=4.8e+02 Score=31.41 Aligned_cols=29 Identities=21% Similarity=0.078 Sum_probs=22.4
Q ss_pred HHHHHHHHhHHHHHHHHHHhHHHH-HHHHh
Q 006213 499 RLRESVRTKRTELQLLKQNLKLTS-ILKSQ 527 (656)
Q Consensus 499 ~LR~sVa~KRieLq~lkq~~KL~~-IL~~Q 527 (656)
+-|..|..+|+++++.|.+.++.. ||++=
T Consensus 318 ~~r~~vl~rr~~~~l~k~~~r~h~~~legl 347 (635)
T PRK09631 318 EHLQKVLKMELELERAKLLEKIFAKTLEQI 347 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhhH
Confidence 568889999999999888888764 55443
No 97
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=27.14 E-value=4.8e+02 Score=27.09 Aligned_cols=30 Identities=7% Similarity=0.060 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 006213 571 NVKDAISSAVDVMQAMASSICLLLSKAGEV 600 (656)
Q Consensus 571 slk~AL~sAvdvMq~i~ssi~~llpKvee~ 600 (656)
.+..+|.....+++++...+...-+.+.++
T Consensus 231 ~l~~~l~~l~~~~~~~~~~l~~~~~~l~~~ 260 (291)
T TIGR00996 231 ALDDALAALSGASAQVRDLLAENRPNLPQA 260 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 455555555555555544444444443333
No 98
>PF02252 PA28_beta: Proteasome activator pa28 beta subunit; InterPro: IPR003186 PA28 activator complex (also known as 11S regulator of 20S proteasome) is a ring shaped hexameric structure of alternating alpha (PA28alpha) and beta (PA28beta) subunits. The catalytic properties of PA28alpha and PA28beta-activated proteosome are similar [, ]. This entry represents the beta subunit. The activator complex binds to the 20S proteasome and stimulates peptidase activity in and ATP-independent manner.; GO: 0008537 proteasome activator complex; PDB: 1AVO_N.
Probab=26.86 E-value=3.6e+02 Score=26.58 Aligned_cols=57 Identities=25% Similarity=0.323 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006213 569 FQNVKDAISSAVDVMQAMASSICLLLSKAGEVNSLVSELSNVSAKEHALLGQCKDLLSTIAAM 631 (656)
Q Consensus 569 ~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~LvsELA~Va~qE~~lLeEC~eLL~~va~L 631 (656)
++.|+-.+....+.++.|..-|..+.||+|+-+.+ .|+-||.. |+|..++...+..+
T Consensus 15 ~~~vk~ei~~l~e~~~~vk~WI~l~IPkiEDGNNF-----GV~VQeev-l~~l~~v~~~a~~~ 71 (150)
T PF02252_consen 15 LQKVKPEIRELIEKCNTVKMWIQLLIPKIEDGNNF-----GVSVQEEV-LEELRAVESKAENF 71 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-----SS--H-----HHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCcc-----cHHHHHHH-HHHHHHHHHHHHHH
Confidence 45688889999999999999999999999998776 34444442 44444444444333
No 99
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=26.41 E-value=7.9e+02 Score=26.01 Aligned_cols=94 Identities=16% Similarity=0.191 Sum_probs=48.4
Q ss_pred hhhhHHHHhhhhhhhhhHHHHHHHHHhccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 006213 528 MTFLEESALMDRDYSSSLLGAIEALRASTLRLPVVGGARADFQNVKDAISSAVDVMQAMASSICLLLSKAGEVNSLVSEL 607 (656)
Q Consensus 528 m~~LE~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~LvsEL 607 (656)
+.||.+=+.||.+|+-.|..+..... ..+ ....+..+...-...++.|+..=..|--++.++..-|.++
T Consensus 32 ~~f~keRa~iEe~Yak~L~kLak~~~----~~~-------~~Gt~~~~~~~~~~e~e~~a~~H~~la~~L~~~~~~l~~~ 100 (269)
T cd07673 32 SDFIRERATIEEAYSRSMTKLAKSAS----NYS-------QLGTFAPVWDVFKTSTEKLANCHLELVRKLQELIKEVQKY 100 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc----cCC-------CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788889999999999988777442 112 2233433333333333444433333333333333334555
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhH
Q 006213 608 SNVSAKEHALLGQ-CKDLLSTIAAMQ 632 (656)
Q Consensus 608 A~Va~qE~~lLeE-C~eLL~~va~Lq 632 (656)
+....+++..+.| +.+.+.....++
T Consensus 101 ~~~~~k~rK~~ke~~~~~~~~~~~~~ 126 (269)
T cd07673 101 GEEQVKSHKKTKEEVAGTLEAVQNIQ 126 (269)
T ss_pred HHHHHHHHHhHHHHHhhHHHHHHHHH
Confidence 5444555555443 333444444333
No 100
>PRK02793 phi X174 lysis protein; Provisional
Probab=26.17 E-value=3.1e+02 Score=23.75 Aligned_cols=42 Identities=26% Similarity=0.294 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 006213 479 LSAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKL 520 (656)
Q Consensus 479 ~~~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL 520 (656)
+..+...-|-+|...-..|.+|.+-|++...++.+++..+++
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~ 47 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRL 47 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556778889999999999999999999999998877664
No 101
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=25.93 E-value=1.5e+03 Score=29.14 Aligned_cols=193 Identities=18% Similarity=0.211 Sum_probs=117.1
Q ss_pred ccccccCC-ccchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 006213 442 VRRGKVGE-NRVVDAHLLRLFHNRLLQWRFVNARANAALSAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKL 520 (656)
Q Consensus 442 ~rkgKk~~-~~~Ed~HqLRLLhNRlLQWRFaNARAeaa~~~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL 520 (656)
+..||..+ ...-|..+|.||-+=-=---|-+ |-+..++..+.+-.+. ..|-+|=+.|..+=-+|+..|.+++.
T Consensus 139 V~QGkI~~La~akD~eRL~LLkeVaGtrvYee-rreeSlkim~ET~qK~-----ekI~ell~yieerLreLEeEKeeL~~ 212 (1200)
T KOG0964|consen 139 VPQGKINELANAKDSERLELLKEVAGTRVYEE-RREESLKIMEETKQKR-----EKINELLKYIEERLRELEEEKEELEK 212 (1200)
T ss_pred eechhhHHhhcCCcHHHHHHHHHhcccchhHH-hHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45677632 34568888988875322222333 3445555555544443 56777777888888899999999999
Q ss_pred HHHHHHhhhhhHHHHhhhhhhhhhHHHHHHHHHhccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 006213 521 TSILKSQMTFLEESALMDRDYSSSLLGAIEALRASTLRLPVVGGARADFQNVKDAISSAVDVMQAMASSICLLLSKAGEV 600 (656)
Q Consensus 521 ~~IL~~Qm~~LE~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~ 600 (656)
+.-|+-+...|| +...+++|-... +-++.|+....-.|= .-..+..++..+.|-|+.|.--|..|-.+...+
T Consensus 213 Yqkldk~rr~lE-YtiYdrEl~E~~-~~l~~le~~r~~~~e------~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l 284 (1200)
T KOG0964|consen 213 YQKLDKERRSLE-YTIYDRELNEIN-GELERLEEDRSSAPE------ESEQYIDALDKVEDESEDLKCEIKELENKLTNL 284 (1200)
T ss_pred HHHHHHhHhhhh-hhhhhhHHHHHH-HHHHHHHHHHhccch------hhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 999999998885 677777776433 333445544433332 223577788888888877777666665554433
Q ss_pred HH---------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhh
Q 006213 601 NS---------------------------------------LVSELSNVSAKEHALLGQCKDLLSTIAAMQVKECSLRTH 641 (656)
Q Consensus 601 ~~---------------------------------------LvsELA~Va~qE~~lLeEC~eLL~~va~LqVeE~SLR~~ 641 (656)
.. ..-.|-.|-..+-.-.+|..+.+-.-..|+-+|.=++..
T Consensus 285 ~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~r 364 (1200)
T KOG0964|consen 285 REEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKR 364 (1200)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHH
Confidence 22 222233333333333344444444445666677777777
Q ss_pred hhhcccc
Q 006213 642 ILQSERL 648 (656)
Q Consensus 642 lIQ~~~~ 648 (656)
|.++.+.
T Consensus 365 l~~l~~~ 371 (1200)
T KOG0964|consen 365 LAKLEQK 371 (1200)
T ss_pred HHHHHHH
Confidence 7777653
No 102
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=25.72 E-value=5.6e+02 Score=24.51 Aligned_cols=86 Identities=26% Similarity=0.271 Sum_probs=59.0
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHhccccccccCCc---ccchHHHHHHHHHHHHHH-----HHHHHHHHHhhhhhhhHHHH
Q 006213 532 EESALMDRDYSSSLLGAIEALRASTLRLPVVGGA---RADFQNVKDAISSAVDVM-----QAMASSICLLLSKAGEVNSL 603 (656)
Q Consensus 532 E~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GA---kaD~~slk~AL~sAvdvM-----q~i~ssi~~llpKvee~~~L 603 (656)
++|..|-.+..+.|.-++.-|..+++ |- +.+++.+++.+..+++-+ +...++|.+|. .+...
T Consensus 11 ~~W~~~~~~~~~pv~~al~~ld~ss~------g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~----~i~~~ 80 (142)
T PF04048_consen 11 DEWPFMLTDDFNPVELALSLLDDSSV------GRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYS----QILSS 80 (142)
T ss_pred HHHHHHhcCCCcHHHHHHHhcCCCCc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 78999999999999999998887653 42 445566666666665543 44555666665 34444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006213 604 VSELSNVSAKEHALLGQCKDLLST 627 (656)
Q Consensus 604 vsELA~Va~qE~~lLeEC~eLL~~ 627 (656)
|.+--.-+.+=|..|++|+.+|..
T Consensus 81 i~~sq~~i~~lK~~L~~ak~~L~~ 104 (142)
T PF04048_consen 81 ISESQERIRELKESLQEAKSLLGC 104 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555555555558889999999854
No 103
>PF15556 Zwint: ZW10 interactor
Probab=25.54 E-value=6.8e+02 Score=26.55 Aligned_cols=39 Identities=13% Similarity=0.200 Sum_probs=30.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006213 594 LSKAGEVNSLVSELSNVSAKEHALLGQCKDLLSTIAAMQ 632 (656)
Q Consensus 594 lpKvee~~~LvsELA~Va~qE~~lLeEC~eLL~~va~Lq 632 (656)
.-+++.....+..|-.-+.+|+.-|+.+.-+|.-+..||
T Consensus 154 qqeLe~l~qeL~~lkqQa~qeqdKLQR~qtfLqLl~tLq 192 (252)
T PF15556_consen 154 QQELERLYQELGTLKQQAGQEQDKLQRHQTFLQLLYTLQ 192 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344556666677777788999999999999998888887
No 104
>PRK04863 mukB cell division protein MukB; Provisional
Probab=25.52 E-value=1.7e+03 Score=29.63 Aligned_cols=38 Identities=13% Similarity=0.070 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 006213 479 LSAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQ 516 (656)
Q Consensus 479 ~~~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq 516 (656)
+..++..|++.|-.+=..+.++.+.+....=++..|+.
T Consensus 291 ~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEk 328 (1486)
T PRK04863 291 LRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQ 328 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777776666554444444433
No 105
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=25.50 E-value=1.1e+03 Score=28.03 Aligned_cols=100 Identities=13% Similarity=0.043 Sum_probs=53.4
Q ss_pred hhhhhcchhhHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhH
Q 006213 458 LRLFHNRLLQWRFVNARANAALSAQRL------------------NAERSLYNAWIASSRLRESVRTKRTELQLLKQNLK 519 (656)
Q Consensus 458 LRLLhNRlLQWRFaNARAeaa~~~q~~------------------~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~K 519 (656)
.+-+|+.||+-++-++.++......+. .+-..+|+.|..++.==.+...+..-|+..+.-..
T Consensus 62 V~R~~D~fl~~q~~~~~s~~~~~~~~~~~l~~le~ll~~~~~gls~~l~~ff~alq~la~~P~~~~~R~~vl~~A~~La~ 141 (624)
T PRK12714 62 VGRVADQLAISRLLDSGGELSRLQQLSSLSNRVDALYSNTATNVAGLWSNFFDSTSALSSNASSTAERQSMLDSGNSLAT 141 (624)
T ss_pred EEEhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 445677777776666655444333322 34577889999888866666776666666655444
Q ss_pred HHHHHHHhhh----hhHHHHhhhhhhhhhHHHHHHHHHhccc
Q 006213 520 LTSILKSQMT----FLEESALMDRDYSSSLLGAIEALRASTL 557 (656)
Q Consensus 520 L~~IL~~Qm~----~LE~W~~LE~ehsssLs~a~eAL~Aatl 557 (656)
-..-+..|+. -+++=-.-.-+..+.|..-|..|...+.
T Consensus 142 ~f~~~~~~L~~~~~~~n~~i~~~V~~IN~l~~~IA~LN~~I~ 183 (624)
T PRK12714 142 RFKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKINGTIG 183 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333 2222111222233445555555555443
No 106
>PF15011 CK2S: Casein Kinase 2 substrate
Probab=25.46 E-value=6.8e+02 Score=24.92 Aligned_cols=111 Identities=20% Similarity=0.215 Sum_probs=59.5
Q ss_pred HHHHhhhhhh---hhhHHHHHHHHHhccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 006213 532 EESALMDRDY---SSSLLGAIEALRASTLRLPVVGGARADFQNVKDAISSAVDVMQAMASSICLLLSKAGEVNSLVSELS 608 (656)
Q Consensus 532 E~W~~LE~eh---sssLs~a~eAL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~LvsELA 608 (656)
+.|..+..+- ..+|+.++|-|.|.. .+...|.--.++.+|.+.|.. ++|.+++..+..|--+++++..+.-.|.
T Consensus 15 ~~W~~~~~~~~~~l~sl~nL~eqL~al~-~~~~~~~pL~~fpdl~~rL~~--Kq~~ale~vl~~L~e~l~~l~~v~~~l~ 91 (168)
T PF15011_consen 15 EKWDSALSRCLPLLSSLANLAEQLQALQ-NVKNYGTPLRSFPDLQERLRR--KQLEALETVLAKLRETLEELQKVRDSLS 91 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccCCcccccccHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5676666554 356666666665532 233322113444455555432 2334444444444444444444443333
Q ss_pred HHHHHHHH------------------------HHHHHHHHHHHHHHhHHhhhhhhhhhhhc
Q 006213 609 NVSAKEHA------------------------LLGQCKDLLSTIAAMQVKECSLRTHILQS 645 (656)
Q Consensus 609 ~Va~qE~~------------------------lLeEC~eLL~~va~LqVeE~SLR~~lIQ~ 645 (656)
+....=.. .|.+|.|=|..+..|.=.|+-+|..+++.
T Consensus 92 ~~~~~~~~l~~~~~~~~~l~~~~~~~r~~~~PSlAdmLewl~di~r~y~~~yl~k~~lL~~ 152 (168)
T PF15011_consen 92 RQVRDVFQLYEQHAGLDELSLKALQQRSGVCPSLADMLEWLQDIERMYRSEYLLKKSLLSS 152 (168)
T ss_pred HHHHHHHHHHHhccCCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33322221 24568888888888888888888888875
No 107
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=25.12 E-value=1.2e+03 Score=28.15 Aligned_cols=59 Identities=14% Similarity=0.098 Sum_probs=36.4
Q ss_pred hhhhhcchhhHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 006213 458 LRLFHNRLLQWRFVNARANAALSAQRL------------------NAERSLYNAWIASSRLRESVRTKRTELQLLKQ 516 (656)
Q Consensus 458 LRLLhNRlLQWRFaNARAeaa~~~q~~------------------~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq 516 (656)
.+-.|+.||+=++-++.++......+. .+-..+|+.|..+++==.+...+-.-|...+.
T Consensus 63 v~R~~d~fl~~q~r~~~s~~~~~~~~~~~l~~le~l~~~~~~gls~~L~~Ff~alq~la~~P~~~~~Rq~vl~~a~~ 139 (651)
T PRK06945 63 VKRQYSQYLSAQLNNAQAASSSLSTYYSQISQLNNYLADPTAGLSPAITSFFTGLQNVANNPSDPSARQTMLSNAQT 139 (651)
T ss_pred EEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 455788888888777766554443332 23466788888777655555555555554443
No 108
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=25.07 E-value=4.7e+02 Score=31.82 Aligned_cols=43 Identities=14% Similarity=0.092 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhhhhHHH
Q 006213 491 YNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQMTFLEES 534 (656)
Q Consensus 491 y~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LE~W 534 (656)
..+-....+.|..|..+|.+.++.|.+.+ ..||++.+..++.+
T Consensus 340 ~~il~~~~~~R~~~~~rr~~~~l~k~~~r-~~il~g~~~~~~~i 382 (738)
T TIGR01061 340 LSYLDAYIKHCHEVIINRSKYELEKASKR-LEIVEGLIKAISII 382 (738)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh
Confidence 33344445778999999999988877766 45777777777655
No 109
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=24.94 E-value=7.1e+02 Score=27.98 Aligned_cols=105 Identities=13% Similarity=0.042 Sum_probs=62.0
Q ss_pred hhhhhhHHHHHHHHHhccccccccCCcccchHHHH-----HHHHHHHHHH-----HHHHHHHHHhhhhhhhHHHHHHHHH
Q 006213 539 RDYSSSLLGAIEALRASTLRLPVVGGARADFQNVK-----DAISSAVDVM-----QAMASSICLLLSKAGEVNSLVSELS 608 (656)
Q Consensus 539 ~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~slk-----~AL~sAvdvM-----q~i~ssi~~llpKvee~~~LvsELA 608 (656)
..--.+|..|+--|+...+ ++-..+.-...+.|. +-|..-+|+. ..+...++.|+----+...||++||
T Consensus 218 ~~S~GdLR~Ait~Lqsls~-~gk~It~~~~~e~~~GvVp~~~l~~lle~a~S~d~~~~v~~~Rei~~sg~~~~~lmsQLa 296 (346)
T KOG0989|consen 218 KISDGDLRRAITTLQSLSL-LGKRITTSLVNEELAGVVPDEKLLDLLELALSADTPNTVKRVREIMRSGYSPLQLMSQLA 296 (346)
T ss_pred HHcCCcHHHHHHHHHHhhc-cCcccchHHHHHHHhccCCHHHHHHHHHHHHccChHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 3344677788888887776 222111112222222 1112222221 3556667777777777889999999
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHhHHhhhhhhhhhhh
Q 006213 609 NVSAKE----HALLGQCKDLLSTIAAMQVKECSLRTHILQ 644 (656)
Q Consensus 609 ~Va~qE----~~lLeEC~eLL~~va~LqVeE~SLR~~lIQ 644 (656)
.|+... ..--++|...|+....-...=+.|+-+|+-
T Consensus 297 ~vi~~~~g~~d~~k~~~~~kl~~~~~~~~dg~~l~~~L~~ 336 (346)
T KOG0989|consen 297 EVIMDIIGLSDEQKAQISLKLFTRDKRLEDGEDLELALKD 336 (346)
T ss_pred HHHHhccccchHHHHHHHHHHHhccchhhcchhHHHHHHH
Confidence 999988 666777888777766544444555555443
No 110
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=24.94 E-value=9.7e+02 Score=26.52 Aligned_cols=76 Identities=13% Similarity=0.218 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhh
Q 006213 569 FQNVKDAISSAVDVMQAMASSICLLLSKAGEVNSLVSELSNVSAKEHALLGQCKDLLSTIAAMQVKECSLRTHILQ 644 (656)
Q Consensus 569 ~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~LvsELA~Va~qE~~lLeEC~eLL~~va~LqVeE~SLR~~lIQ 644 (656)
+..+.+|=.....+=++|.--...+.-.-++|..|++++++.=...+.+.-|-.+|...+....---..|...|.-
T Consensus 205 v~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~e 280 (306)
T PF04849_consen 205 VKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQE 280 (306)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777778888888888888899999999999999999999999999999999998888876555556554433
No 111
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=24.92 E-value=5.4e+02 Score=23.57 Aligned_cols=57 Identities=18% Similarity=0.210 Sum_probs=31.0
Q ss_pred hccccccccCCcccch-------------------HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 006213 554 ASTLRLPVVGGARADF-------------------QNVKDAISSAVDVMQAMASSICLLLSKAGEVNSLVSELSNV 610 (656)
Q Consensus 554 AatlRLPv~~GAkaD~-------------------~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~LvsELA~V 610 (656)
.....+|+.+|+.+.. ..+.+|+.-.-+-...+...+..+...+.+....+.++..+
T Consensus 47 ~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~ 122 (126)
T TIGR00293 47 GKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQE 122 (126)
T ss_pred CCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789988885321 24555555555555555555555555555554444444433
No 112
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=24.58 E-value=1.2e+03 Score=27.52 Aligned_cols=137 Identities=17% Similarity=0.148 Sum_probs=88.1
Q ss_pred chhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHH--
Q 006213 452 VVDAHLLRLFHNRLLQWRFVNARANAALSAQRLN------AERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSI-- 523 (656)
Q Consensus 452 ~Ed~HqLRLLhNRlLQWRFaNARAeaa~~~q~~~------AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~I-- 523 (656)
++..-++|+-||..+-=+|.|. .+.+..+.+.+ .|+++--+-..+-.|.+.+...+-+|++|...+.=..-
T Consensus 99 e~k~d~v~~khn~~I~~k~g~~-L~~v~~~~~~~~~~~~~e~~q~~~LekAl~~~~~i~~~E~~~l~~L~~AL~kE~~~R 177 (508)
T PF00901_consen 99 EQKEDEVREKHNKKIIEKFGND-LEKVYKFMKGQEKVEEEEENQIEILEKALKSYGKIVKEENKQLDRLARALQKESRER 177 (508)
T ss_pred HHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445578899999999999887 55554443332 33454445555556666666666666665544332222
Q ss_pred ----------HHHhhhhh------HHHHhhhhhhhhhHHHHHHHHHhccccccccCCcccchHHHHHHHHHHHHHHHHHH
Q 006213 524 ----------LKSQMTFL------EESALMDRDYSSSLLGAIEALRASTLRLPVVGGARADFQNVKDAISSAVDVMQAMA 587 (656)
Q Consensus 524 ----------L~~Qm~~L------E~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ 587 (656)
.+.-+.-| |.=+.+|+---.-++-..+-|+++.--+|+.|...|..-+-..|+..+.+|=+-|.
T Consensus 178 t~dE~~mv~~yr~ki~aL~~aIe~Er~~m~EEAiqe~~dmsaeVlE~AaeEVP~vGag~At~iATaRaieg~yKLkkvI~ 257 (508)
T PF00901_consen 178 TQDERKMVEEYRQKIDALKNAIEVEREGMQEEAIQEIADMSAEVLEHAAEEVPLVGAGVATGIATARAIEGAYKLKKVIN 257 (508)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHhhhCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223333 33344444444555666788999999999999999998888999999988877776
Q ss_pred HH
Q 006213 588 SS 589 (656)
Q Consensus 588 ss 589 (656)
..
T Consensus 258 aL 259 (508)
T PF00901_consen 258 AL 259 (508)
T ss_pred Hh
Confidence 54
No 113
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=24.44 E-value=1e+03 Score=28.61 Aligned_cols=90 Identities=18% Similarity=0.252 Sum_probs=56.2
Q ss_pred hhhHHHHHHHHHhccccccccCCc----ccchHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHHHHHH--
Q 006213 542 SSSLLGAIEALRASTLRLPVVGGA----RADFQNVKDAISSAVDVMQAMASSICL-LLSKAGEVNSLVSELSNVSAKE-- 614 (656)
Q Consensus 542 sssLs~a~eAL~AatlRLPv~~GA----kaD~~slk~AL~sAvdvMq~i~ssi~~-llpKvee~~~LvsELA~Va~qE-- 614 (656)
+.+|..+..+|+...- =|-...+ .-..+.|...++..-+-|+.+...+.. +-..|++++.++.+||++-.+=
T Consensus 107 s~~L~~Ff~alq~la~-~P~~~~~Rq~vl~~a~~La~~fn~~~~~L~~~~~~~n~~I~~~V~~IN~l~~qIA~LN~~I~~ 185 (651)
T PRK06945 107 SPAITSFFTGLQNVAN-NPSDPSARQTMLSNAQTLASQFNAAGQQLDQLRQSVNTQLTSSVTQINSYTKQIAQLNDQIAK 185 (651)
T ss_pred HHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555544332 1333333 344456667777777777777765544 4456888888888887764321
Q ss_pred ---------HHHHHHHHHHHHHHHHhH
Q 006213 615 ---------HALLGQCKDLLSTIAAMQ 632 (656)
Q Consensus 615 ---------~~lLeEC~eLL~~va~Lq 632 (656)
..||||=.+||..++.+-
T Consensus 186 ~~~~~g~~~ndLlDqRD~ll~eLS~~v 212 (651)
T PRK06945 186 AESSQGQPPNDLLDQRDQLVSELSKLV 212 (651)
T ss_pred hhccCCCCcchhHHHHHHHHHHHHhhc
Confidence 269999999999998874
No 114
>PHA03332 membrane glycoprotein; Provisional
Probab=24.42 E-value=1.4e+03 Score=29.62 Aligned_cols=68 Identities=26% Similarity=0.300 Sum_probs=42.8
Q ss_pred hhhHHHHHHHHHhccccccccCCcccchHHHHHHHHH---H----HHHHHHHHHHHHHh----hhhhhhHHHHHHHHHH
Q 006213 542 SSSLLGAIEALRASTLRLPVVGGARADFQNVKDAISS---A----VDVMQAMASSICLL----LSKAGEVNSLVSELSN 609 (656)
Q Consensus 542 sssLs~a~eAL~AatlRLPv~~GAkaD~~slk~AL~s---A----vdvMq~i~ssi~~l----lpKvee~~~LvsELA~ 609 (656)
..+|-++.+||..+.+.+=..--+.+|+.+|+++|.. | .|.+..|+..|.++ .-++.+++.=|+.|.+
T Consensus 866 ~vAL~~A~QAL~va~~~~~~llqnaaaia~mksaIg~tNaAV~~lsDai~klGnti~kisatl~~nI~avNgRIs~Led 944 (1328)
T PHA03332 866 SAALNAATQALAVATLYVNQLLQATAATAEMASKIGGLNARVDKTSDVITKLGDTIAKISATLDNNIRAVNGRVSDLED 944 (1328)
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhcccHHHHHH
Confidence 3678888888888888776666667777777777643 3 33444555555444 3445556655555544
No 115
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=24.37 E-value=8.3e+02 Score=29.08 Aligned_cols=107 Identities=10% Similarity=0.167 Sum_probs=57.5
Q ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 006213 457 LLRLFHNRLLQWRFVNARANAALSAQRL-------------------NAERSLYNAWIASSRLRESVRTKRTELQLLKQN 517 (656)
Q Consensus 457 qLRLLhNRlLQWRFaNARAeaa~~~q~~-------------------~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~ 517 (656)
..+-.++.||+=+|.++.++......+. .+-..+|+.|..++.-=.+.+.+..-|+..+.-
T Consensus 72 ~V~R~~D~fl~~q~r~~~s~~~~~~~~~~~l~~le~if~e~~~~gl~~~l~~ff~al~~ls~~P~~~a~R~~vl~~A~~L 151 (627)
T PRK06665 72 SIERIRDELLDSRIIEESGRLGYWKTKDKYLSQLEQVYNEPEDQSLRTRLDDFWDSWQDLSNYPEGLAERQVVLERAQSL 151 (627)
T ss_pred eEEEhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 3444567777666666555553332221 223678888888887655666655555555544
Q ss_pred hHHHHHHHHhhh----hhHHHHhhhhhhhhhHHHHHHHHHhccccccccC
Q 006213 518 LKLTSILKSQMT----FLEESALMDRDYSSSLLGAIEALRASTLRLPVVG 563 (656)
Q Consensus 518 ~KL~~IL~~Qm~----~LE~W~~LE~ehsssLs~a~eAL~AatlRLPv~~ 563 (656)
..-..-+..|+. -+++=-.-.-+..+.|..-|..|..-+.+.-..+
T Consensus 152 a~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~qIa~LN~qI~~~~~~g 201 (627)
T PRK06665 152 GERIHDRYRSLERIRDMANDEIEITVEEINNILRNIADLNEQIVKSQAMG 201 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 333333333333 2222222223345666677777777776665544
No 116
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=24.23 E-value=8.5e+02 Score=25.61 Aligned_cols=57 Identities=18% Similarity=0.110 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006213 573 KDAISSAVDVMQAMASSICLLLSKAGEV-NSLVSELSNVSAKEHALLGQCKDLLSTIA 629 (656)
Q Consensus 573 k~AL~sAvdvMq~i~ssi~~llpKvee~-~~LvsELA~Va~qE~~lLeEC~eLL~~va 629 (656)
.+.|.+|.+-+++-.--....|-.+-+. ...+.+|...+.-+-...++|.++|..+.
T Consensus 156 ~eE~~~A~~kfees~E~a~~~M~n~le~e~e~~~~L~~lv~AQl~Yh~~a~eiL~~l~ 213 (223)
T cd07615 156 DEEIRQAVEKFEESKELAERSMFNFLENDVEQVSQLSVLIEAALDYHRQSTEILEDLQ 213 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445444444444333333333344 45678888999999999999999998765
No 117
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=24.12 E-value=5e+02 Score=22.87 Aligned_cols=81 Identities=15% Similarity=0.156 Sum_probs=0.0
Q ss_pred hhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhHHHHHHHHHHhH--
Q 006213 453 VDAHLLRLFHNRLLQWRFVNARANAALSAQRLNAERSLYNAWIASSRLRESVR-----------TKRTELQLLKQNLK-- 519 (656)
Q Consensus 453 Ed~HqLRLLhNRlLQWRFaNARAeaa~~~q~~~AE~~Ly~~W~~is~LR~sVa-----------~KRieLq~lkq~~K-- 519 (656)
.++.+|+-||+.+|.=-+.......-+......+....-.+=..|-+|..... .++.+.+.|.++++
T Consensus 22 ~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r~~~~q~~~L~~~f~~~ 101 (117)
T smart00503 22 QNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRASGSASDRTRKAQTEKLRKKFKEV 101 (117)
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhhhHH
Q 006213 520 LTSILKSQMTFLEE 533 (656)
Q Consensus 520 L~~IL~~Qm~~LE~ 533 (656)
|...-..|..|.+.
T Consensus 102 m~~fq~~Q~~~~~~ 115 (117)
T smart00503 102 MNEFQRLQRKYRER 115 (117)
T ss_pred HHHHHHHHHHHHHH
No 118
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=24.03 E-value=1.1e+03 Score=28.21 Aligned_cols=65 Identities=18% Similarity=0.267 Sum_probs=45.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhH
Q 006213 568 DFQNVKDAISSAVDVMQAMASSICL-LLSKAGEVNSLVSELSNVSAKE--------HALLGQCKDLLSTIAAMQ 632 (656)
Q Consensus 568 D~~slk~AL~sAvdvMq~i~ssi~~-llpKvee~~~LvsELA~Va~qE--------~~lLeEC~eLL~~va~Lq 632 (656)
..+.|...++..-+-|+.+...+.. +-..|++++.++.+||++-.+= -.||||=.+||..++.+-
T Consensus 135 ~A~~La~~f~~~~~~L~~~~~~~n~~i~~~V~~IN~l~~~IA~LN~~I~~~~~~~~ndLlDqRD~ll~eLS~~v 208 (624)
T PRK12714 135 SGNSLATRFKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKINGTIGSSAQNAAPDLLDQRDALVSKLVGYT 208 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHhhc
Confidence 3445666667777777777766553 3456788888888887765443 359999999999998773
No 119
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=23.61 E-value=9e+02 Score=28.77 Aligned_cols=65 Identities=14% Similarity=0.255 Sum_probs=47.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhH
Q 006213 568 DFQNVKDAISSAVDVMQAMASSIC-LLLSKAGEVNSLVSELSNVSAKE------------HALLGQCKDLLSTIAAMQ 632 (656)
Q Consensus 568 D~~slk~AL~sAvdvMq~i~ssi~-~llpKvee~~~LvsELA~Va~qE------------~~lLeEC~eLL~~va~Lq 632 (656)
..+.|...++...+-|+.+...+. .+-..|++++.++.+|+++-.|= -.||++=..||..++.+-
T Consensus 140 ~a~~L~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~qI~~~~~~g~~~~~ndL~DqRD~ll~eLS~~v 217 (613)
T PRK08471 140 KTETLTNNIKDTRERLDTLQKKVNEELKVTVDEINSLGKQIAEINKQIKEVEAGKTLKHANELRDKRDELELTLSKLV 217 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHhhc
Confidence 345677777777777777777554 45567888888888888775431 268999999999888773
No 120
>PRK02224 chromosome segregation protein; Provisional
Probab=23.27 E-value=1.4e+03 Score=27.69 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=21.7
Q ss_pred hccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 006213 554 ASTLRLPVVGGARADFQNVKDAISSAVDVMQAMASSICLLLSKAGEV 600 (656)
Q Consensus 554 AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~ 600 (656)
..+| |+ +|-.++-+.+.+.+....+.+..+..-+..+--.+++.
T Consensus 451 ~~~C--p~-C~r~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~ 494 (880)
T PRK02224 451 AGKC--PE-CGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEV 494 (880)
T ss_pred cccC--CC-CCCcCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 77 55555655555555544444444444444444333333
No 121
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=23.26 E-value=6.6e+02 Score=28.18 Aligned_cols=78 Identities=17% Similarity=0.177 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH----------HhHHHHHHHHhh-hhhHHHHhhhhhhh---hhHHHHHHHHHh
Q 006213 489 SLYNAWIASSRLRESVRTKRTELQLLKQ----------NLKLTSILKSQM-TFLEESALMDRDYS---SSLLGAIEALRA 554 (656)
Q Consensus 489 ~Ly~~W~~is~LR~sVa~KRieLq~lkq----------~~KL~~IL~~Qm-~~LE~W~~LE~ehs---ssLs~a~eAL~A 554 (656)
.+-.+...+.+|+..+.+.+.++..++. +.++..+...+. ...+++..++.+.. ..|..+-..|..
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~ 316 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDSQK 316 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5566677788888888877777776543 334444433333 23455555655553 445566677888
Q ss_pred ccccccccCCcc
Q 006213 555 STLRLPVVGGAR 566 (656)
Q Consensus 555 atlRLPv~~GAk 566 (656)
..++=|+.|-+.
T Consensus 317 ~~I~AP~dG~V~ 328 (457)
T TIGR01000 317 GVIKAPEDGVLH 328 (457)
T ss_pred CEEECCCCeEEE
Confidence 999999976554
No 122
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.10 E-value=1.2e+03 Score=27.20 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006213 570 QNVKDAISSAVDVMQAMAS 588 (656)
Q Consensus 570 ~slk~AL~sAvdvMq~i~s 588 (656)
.-|-+|+.+...+|..|-.
T Consensus 313 kvvl~AyksGs~alK~il~ 331 (439)
T KOG2911|consen 313 KVVLQAYKSGSEALKAILA 331 (439)
T ss_pred HHHHHHHHHhHHHHHHHHh
Confidence 3455666666666665544
No 123
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=23.05 E-value=1.3e+03 Score=27.18 Aligned_cols=51 Identities=20% Similarity=0.348 Sum_probs=33.4
Q ss_pred HHHHH-HHHHHHHHhHHHHHHHHHHhHH--------HH----HHHHhhhhhHHHHhhhhhhhhh
Q 006213 494 WIASS-RLRESVRTKRTELQLLKQNLKL--------TS----ILKSQMTFLEESALMDRDYSSS 544 (656)
Q Consensus 494 W~~is-~LR~sVa~KRieLq~lkq~~KL--------~~----IL~~Qm~~LE~W~~LE~ehsss 544 (656)
|+.+. +||--+..-|.-.+++++++++ +. -+.++-..||++++||.+|..=
T Consensus 293 WIsLteeLR~dle~~r~~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~~L 356 (488)
T PF06548_consen 293 WISLTEELRVDLESSRSLAEKLEMELDSEKKCTEELDDALQRAMEGHARMLEQYADLQEKHNDL 356 (488)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66653 5676666666666666655432 23 3345567899999999999743
No 124
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=23.04 E-value=1.2e+03 Score=26.95 Aligned_cols=124 Identities=15% Similarity=0.185 Sum_probs=0.0
Q ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH
Q 006213 461 FHNRLLQWRFVNARANAALSAQRLNAE-------------------RSLYNAWIASSRLRESVRTKRTELQLLKQNLKLT 521 (656)
Q Consensus 461 LhNRlLQWRFaNARAeaa~~~q~~~AE-------------------~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~ 521 (656)
.++.||+-++.++.++......+...- ..+|+.|..++.-=++.+.+..-|+..+.-..-.
T Consensus 76 ~~D~fl~~q~r~~~s~~~~~~~~~~~l~~le~~f~~~~~~gl~~~l~~ff~a~~~la~~P~~~~~r~~vl~~a~~La~~~ 155 (507)
T PRK07739 76 IRDQFLDIQYRRENNKLGYWETKADALSQMEDIMNEPSDTGLNKVLDQFWNSLQELSKNPENLGARSVVRQRAQALAETF 155 (507)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhhHHHHhhhhhh----hhhHHHHHHHHHhccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006213 522 SILKSQMTFLEESALMDRDY----SSSLLGAIEALRASTLRLPVVGGARADFQNVKDAISSAVDVMQAMASSICLLLSKA 597 (656)
Q Consensus 522 ~IL~~Qm~~LE~W~~LE~eh----sssLs~a~eAL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKv 597 (656)
.-+..|+.-|+.=..-|-+. .+.|..-|..|..-+...-..++.-.|+.+
T Consensus 156 n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~~~~~~g~~~ndLlD-------------------------- 209 (507)
T PRK07739 156 NYLSQSLTDIQNDLKSEIDVTVKEINSLASQISDLNKQIAKVEPNGYLPNDLYD-------------------------- 209 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHH--------------------------
Q ss_pred hhHHHHHHHHHHHH
Q 006213 598 GEVNSLVSELSNVS 611 (656)
Q Consensus 598 ee~~~LvsELA~Va 611 (656)
+.+.|+.||++.+
T Consensus 210 -qRD~ll~~LS~~v 222 (507)
T PRK07739 210 -QRDLLLDELSKIV 222 (507)
T ss_pred -HHHHHHHHHHhhc
No 125
>PRK04406 hypothetical protein; Provisional
Probab=23.02 E-value=4.4e+02 Score=23.13 Aligned_cols=44 Identities=11% Similarity=0.120 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH
Q 006213 478 ALSAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLT 521 (656)
Q Consensus 478 a~~~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~ 521 (656)
.+..+...-|-+|...-+.|.+|.+-|+....+++.|+..+++.
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667788999999999999999999999999998777643
No 126
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=22.69 E-value=8.3e+02 Score=24.91 Aligned_cols=125 Identities=15% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHhH-HHHHHHHhhh-----hhHHHHhhhhhhhhhHHHHHHHHHhccccccccCCcccchHHHH
Q 006213 500 LRESVRTKRTELQLLKQNLK-LTSILKSQMT-----FLEESALMDRDYSSSLLGAIEALRASTLRLPVVGGARADFQNVK 573 (656)
Q Consensus 500 LR~sVa~KRieLq~lkq~~K-L~~IL~~Qm~-----~LE~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~slk 573 (656)
+++.+..+|.+|+.++.+.. |..-++..+. .+..+..+..+.. ..+..+..|+
T Consensus 18 ~~~~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~---------------------~~~~r~~~l~ 76 (302)
T PF10186_consen 18 VNNRLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIE---------------------ELRERLERLR 76 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---------------------HHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhhc
Q 006213 574 DAISSAVDVMQAMASSICLLLSKAGEVNSLVS----ELSNVSAKEHALLGQCKDLLSTIAAMQVKECSLRTHILQS 645 (656)
Q Consensus 574 ~AL~sAvdvMq~i~ssi~~llpKvee~~~Lvs----ELA~Va~qE~~lLeEC~eLL~~va~LqVeE~SLR~~lIQ~ 645 (656)
+.+...-+-++....-+..+--+.+.....+. .......+.....+++.+.-..+..++-+=..-|.+++|.
T Consensus 77 ~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~ 152 (302)
T PF10186_consen 77 ERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQE 152 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 127
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=22.63 E-value=4.4e+02 Score=28.08 Aligned_cols=71 Identities=17% Similarity=0.103 Sum_probs=45.5
Q ss_pred cccccCCccchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhH-HH
Q 006213 443 RRGKVGENRVVDAHLLRLFHNRLLQWRFVNARANAALSAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLK-LT 521 (656)
Q Consensus 443 rkgKk~~~~~Ed~HqLRLLhNRlLQWRFaNARAeaa~~~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~K-L~ 521 (656)
++.++...+-++.|..|.=+| | +++......+....-.+|+++..|-+--...|.+++.|++++. |.
T Consensus 182 ~~~~~~~~~~~~~y~err~rN--------N----~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~ 249 (269)
T KOG3119|consen 182 SKLSSPVEKKDPEYKERRRRN--------N----EAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLR 249 (269)
T ss_pred ccCCCchhcCCHHHHHHHHhh--------h----HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555667776665443 2 3344444455555577899999998888888888888887765 44
Q ss_pred HHHH
Q 006213 522 SILK 525 (656)
Q Consensus 522 ~IL~ 525 (656)
.++.
T Consensus 250 ~~~~ 253 (269)
T KOG3119|consen 250 RLFL 253 (269)
T ss_pred HHHH
Confidence 4443
No 128
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.61 E-value=6.4e+02 Score=27.56 Aligned_cols=55 Identities=20% Similarity=0.305 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006213 575 AISSAVDVMQAMASSICLLLSKAG-EVNSLVSELSNVSAKEHALLGQCKDLLSTIA 629 (656)
Q Consensus 575 AL~sAvdvMq~i~ssi~~llpKve-e~~~LvsELA~Va~qE~~lLeEC~eLL~~va 629 (656)
.|..+++=+..+...+..|+.+.. .....+.+|..+...-+..+.+-+++|..+.
T Consensus 240 ~l~~~l~~~~~~~~~~~~ll~~~r~~l~~~l~~l~~~~~~~~~~~~~~~~ll~~~p 295 (359)
T COG1463 240 ALDDALAALSALAATVNDLLAENRPNLNQALANLRPLATLLVDYLPGLEQLLHGLP 295 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 333333334444444444444442 2244455555555555566666666665443
No 129
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=22.52 E-value=9.6e+02 Score=25.60 Aligned_cols=18 Identities=33% Similarity=0.283 Sum_probs=9.6
Q ss_pred HHHHHHHHhccccccccC
Q 006213 546 LGAIEALRASTLRLPVVG 563 (656)
Q Consensus 546 s~a~eAL~AatlRLPv~~ 563 (656)
..+...|...+++=|+.|
T Consensus 200 ~~a~~~l~~~~I~AP~dG 217 (346)
T PRK10476 200 AIAELHLEDTTVRAPFDG 217 (346)
T ss_pred HHHHHHhhcCEEECCCCc
Confidence 334445555666666644
No 130
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=22.34 E-value=7e+02 Score=23.90 Aligned_cols=96 Identities=11% Similarity=0.151 Sum_probs=64.9
Q ss_pred HhhhhhhhhhHHHHHHHHHhccccccccCCcc-cchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHH-HHH-H
Q 006213 535 ALMDRDYSSSLLGAIEALRASTLRLPVVGGAR-ADFQNVKDAISSAVDVMQAMASSICLLLSKAGEV-NSLVSE-LSN-V 610 (656)
Q Consensus 535 ~~LE~ehsssLs~a~eAL~AatlRLPv~~GAk-aD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~-~~LvsE-LA~-V 610 (656)
++=|.+|+..+-.-+-.+.... .++-..-.. .+..++.+++..|++.-..+...+..+..-+++. +....+ |-. .
T Consensus 47 a~eE~~HA~~l~~~i~~rgg~~-~~~~i~~~~~~~~~~~~e~l~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~~f 125 (161)
T cd01056 47 SDEEREHAEKLIKYQNKRGGRV-VLQDIKKPEKDEWGSGLEALELALDLEKLVNQSLLDLHKLASEHNDPHLADFLESEF 125 (161)
T ss_pred HHHHHHHHHHHHHHHHHcCCee-ecCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCCHhHHHHHHHHh
Confidence 5567788877777776665543 233223333 5677899999999999999998888888887764 333333 333 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 006213 611 SAKEHALLGQCKDLLSTIAAM 631 (656)
Q Consensus 611 a~qE~~lLeEC~eLL~~va~L 631 (656)
+.++...+..+.++|..+..+
T Consensus 126 l~eQ~e~~~~~~~~l~~l~~~ 146 (161)
T cd01056 126 LEEQVESIKKLAGYITNLKRV 146 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 666667777777777766644
No 131
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=22.19 E-value=9.5e+02 Score=29.06 Aligned_cols=66 Identities=15% Similarity=0.229 Sum_probs=47.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhH
Q 006213 567 ADFQNVKDAISSAVDVMQAMASSICL-LLSKAGEVNSLVSELSNVSAKE----------HALLGQCKDLLSTIAAMQ 632 (656)
Q Consensus 567 aD~~slk~AL~sAvdvMq~i~ssi~~-llpKvee~~~LvsELA~Va~qE----------~~lLeEC~eLL~~va~Lq 632 (656)
-..+.|...++..-+-|+.+...+.. +-..|++++.++.+||++-.+= ..||||=..||..++.+-
T Consensus 134 ~~A~~La~~fn~~~~~L~~l~~~vn~qI~~~V~~IN~l~~qIA~LN~qI~~~~~~G~~~NdLlDqRD~Ll~eLS~~v 210 (676)
T PRK05683 134 TQAQGLSKRFNSLSSQLNQQNSNINSQLSAMTDQVNNLTTSIASYNKQIAQASASGATPNDLLDARDEAVRQLNELV 210 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHhHHHHHHHHHHHHhhc
Confidence 35556777777777777777775544 4456888888888888765431 379999999999998873
No 132
>PF03564 DUF1759: Protein of unknown function (DUF1759); InterPro: IPR005312 This is a small family of proteins of unknown function.
Probab=21.99 E-value=2.3e+02 Score=26.17 Aligned_cols=64 Identities=16% Similarity=0.337 Sum_probs=47.6
Q ss_pred hhhhhHHHHhhhhhhhhhHHHHHHHHHhcccccc-ccCCcccchHHHHHHHHHHHHHHHHHHHHHH
Q 006213 527 QMTFLEESALMDRDYSSSLLGAIEALRASTLRLP-VVGGARADFQNVKDAISSAVDVMQAMASSIC 591 (656)
Q Consensus 527 Qm~~LE~W~~LE~ehsssLs~a~eAL~AatlRLP-v~~GAkaD~~slk~AL~sAvdvMq~i~ssi~ 591 (656)
.-.|=+.|..||+.|-..- .++.++......|| +..+=-..+..+.+.|+.++.-|..++-.+.
T Consensus 53 ~~~Y~~a~~~L~~~yg~~~-~i~~~~~~~l~~l~~~~~~d~~~L~~~~~~v~~~i~~L~~lg~~~~ 117 (145)
T PF03564_consen 53 EENYEEAWELLEERYGNPR-RIIQALLEELRNLPPISNDDPEALRSLVDKVNNCIRALKALGVNVD 117 (145)
T ss_pred chhhHHHHHHHHHHhCCch-HHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 3558899999999997542 36688888888999 6666666677777888888887777764433
No 133
>PRK12758 DNA topoisomerase IV subunit A; Provisional
Probab=21.85 E-value=1.3e+03 Score=29.12 Aligned_cols=32 Identities=13% Similarity=0.033 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHH
Q 006213 491 YNAWIASSRLRESVRTKRTELQLLKQNLKLTS 522 (656)
Q Consensus 491 y~~W~~is~LR~sVa~KRieLq~lkq~~KL~~ 522 (656)
-.+-..-.+-|..|..+|+++++.+.+.+|..
T Consensus 331 ~eiL~~~~~~r~~vl~rr~~~~l~k~~er~hi 362 (869)
T PRK12758 331 SDILRRSTDHTVSLLKQELEIRLSELEEQWHF 362 (869)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33444556678889999999998888887765
No 134
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=21.76 E-value=4.8e+02 Score=21.82 Aligned_cols=68 Identities=24% Similarity=0.398 Sum_probs=41.6
Q ss_pred HHHHHHhHHHHHHHHhhhhhHHHHhhhhhhhhhHHHHHHHHHhccccccccCCcccchHHHHHHHHHHHHHHHHHHHH
Q 006213 512 QLLKQNLKLTSILKSQMTFLEESALMDRDYSSSLLGAIEALRASTLRLPVVGGARADFQNVKDAISSAVDVMQAMASS 589 (656)
Q Consensus 512 q~lkq~~KL~~IL~~Qm~~LE~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ss 589 (656)
+++++.+++..-| ..|+.+=+.||.+|+..|..+........-. ..+...++.++..-++-++.++..
T Consensus 16 ~~~~~~~~~~~~l---~~~~keRa~lE~~Yak~L~kl~~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~~~a~~ 83 (91)
T PF00611_consen 16 KRLKQGIKLLEEL---ASFFKERASLEEEYAKSLQKLAKKFKKKMKS-------SQEYGTLKNAWDSLLEETEQIAEQ 83 (91)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------SSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccccC-------CCCccHHHHHHHHHHHHHHHHHHH
Confidence 3444444433322 4588888999999999999998887754331 111145566666655555555543
No 135
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=21.65 E-value=2.2e+02 Score=29.62 Aligned_cols=46 Identities=22% Similarity=0.333 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhhhhHH
Q 006213 488 RSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQMTFLEE 533 (656)
Q Consensus 488 ~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LE~ 533 (656)
+-||.+...+.+|++.|..+.-|+..||.+..-..-|..|..||.+
T Consensus 118 ~AL~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la~ 163 (200)
T PF07412_consen 118 KALEEALEENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQYLAE 163 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899999999999999999999999887766666777777754
No 136
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=21.62 E-value=1.6e+03 Score=27.90 Aligned_cols=158 Identities=18% Similarity=0.174 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhHHHHHHHHHH--hHHHHHHHHhhhhhHH----HHhhhhhhh---
Q 006213 478 ALSAQRLNAERSLYNAWIASSRLRE------SVRTKRTELQLLKQN--LKLTSILKSQMTFLEE----SALMDRDYS--- 542 (656)
Q Consensus 478 a~~~q~~~AE~~Ly~~W~~is~LR~------sVa~KRieLq~lkq~--~KL~~IL~~Qm~~LE~----W~~LE~ehs--- 542 (656)
.+.++...+|..+--....|.+|.. .|..-+-+.+++.++ +|+..-+..|-.|+-. -..||.+..
T Consensus 478 KLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~q 557 (961)
T KOG4673|consen 478 KLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQ 557 (961)
T ss_pred HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 3445555566555555555555532 222223344555444 6888888888888754 244444432
Q ss_pred hhHHHHHHHH-Hhcccc-------------------ccc--cC-----------CcccchH-HHHHHHHHHHHHHHHHHH
Q 006213 543 SSLLGAIEAL-RASTLR-------------------LPV--VG-----------GARADFQ-NVKDAISSAVDVMQAMAS 588 (656)
Q Consensus 543 ssLs~a~eAL-~AatlR-------------------LPv--~~-----------GAkaD~~-slk~AL~sAvdvMq~i~s 588 (656)
-++.++...| ++..+. +-| .. |-..|++ -+..|=.-|..+.|.+..
T Consensus 558 at~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~ 637 (961)
T KOG4673|consen 558 ATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPE 637 (961)
T ss_pred HhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 2333333333 111111 110 00 0012222 234444556667777777
Q ss_pred HHHHhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHhh
Q 006213 589 SICLLLSKAGEVNSLVSELSN-VSAKEHALLGQCKDLLSTIAAMQVKE 635 (656)
Q Consensus 589 si~~llpKvee~~~LvsELA~-Va~qE~~lLeEC~eLL~~va~LqVeE 635 (656)
+++-||-.+|.+-.-++.-+. --..|+.|++.-.|-=-.+.+++.+|
T Consensus 638 TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v~~e 685 (961)
T KOG4673|consen 638 TTRPLLRQIEALQETLSKAATAWEREERSLNERLSDSQTLLRINVLEE 685 (961)
T ss_pred cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 778787777776444443332 23346777666554333333333333
No 137
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=21.62 E-value=6.7e+02 Score=30.46 Aligned_cols=64 Identities=19% Similarity=0.235 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH------hHHHHHHHHhhhhhHHHHhhhhhhhhhHHHHHHHHHhcccccc
Q 006213 490 LYNAWIASSRLRESVRTKRTELQLLKQN------LKLTSILKSQMTFLEESALMDRDYSSSLLGAIEALRASTLRLP 560 (656)
Q Consensus 490 Ly~~W~~is~LR~sVa~KRieLq~lkq~------~KL~~IL~~Qm~~LE~W~~LE~ehsssLs~a~eAL~AatlRLP 560 (656)
|--+|+.|-+-.+-.-. .|..++++ .|+...=..|..+|.+.+.+|.+-. .+..+|.-....+.
T Consensus 23 L~~IW~~igE~~~e~d~---~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~----~l~s~l~~~~~~~~ 92 (660)
T KOG4302|consen 23 LQKIWDEIGESETERDK---KLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELN----DLCSALGEPSIIGE 92 (660)
T ss_pred HHHHHHHhCccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhCCcccccc
Confidence 77788877655443332 33333333 2344444556667788888887765 44455544444443
No 138
>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional
Probab=21.32 E-value=1.2e+03 Score=28.08 Aligned_cols=66 Identities=18% Similarity=0.249 Sum_probs=46.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhH
Q 006213 567 ADFQNVKDAISSAVDVMQAMASSICL-LLSKAGEVNSLVSELSNVSAK------EHALLGQCKDLLSTIAAMQ 632 (656)
Q Consensus 567 aD~~slk~AL~sAvdvMq~i~ssi~~-llpKvee~~~LvsELA~Va~q------E~~lLeEC~eLL~~va~Lq 632 (656)
-..+.|...++..-+-|+.+...+.. +-..|++++.++.+||++-.+ --.||||=.+||..++.+-
T Consensus 134 ~~A~~L~~~fn~~~~~L~~~~~~~n~~I~~~V~~iN~l~~qIA~LN~qI~~~~~~ndLlDqRD~ll~eLS~~v 206 (649)
T PRK12715 134 KQSQLLAQQFNSLQTKLEEYERNSTLQVTESVKIINRITKELAEVNGKLLGNNNIPELLDHRDELLKQLSGYT 206 (649)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHhHHHHHHHHHHHHhhc
Confidence 44556666777777777777665544 334678888888888876542 2469999999999998874
No 139
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=21.29 E-value=1.5e+03 Score=27.53 Aligned_cols=64 Identities=20% Similarity=0.191 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006213 570 QNVKDAISSAVDVM-QAMASSICLLLSKAGEVNSLVSELSNVSAKEHALLGQCKDLLSTIAAMQV 633 (656)
Q Consensus 570 ~slk~AL~sAvdvM-q~i~ssi~~llpKvee~~~LvsELA~Va~qE~~lLeEC~eLL~~va~LqV 633 (656)
.+..+++..-..=| .+|.---..|-.|=|.+..+..|+...-..+++--.+|+.||..+++||=
T Consensus 537 ~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqd 601 (697)
T PF09726_consen 537 QECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQD 601 (697)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 35555555443323 23333444455566666677777744444345556689999999999983
No 140
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=20.98 E-value=2e+03 Score=28.66 Aligned_cols=60 Identities=15% Similarity=0.192 Sum_probs=40.8
Q ss_pred hhhhhcchhhHH-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 006213 458 LRLFHNRLLQWR-------FVNARANAALSA---QRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQN 517 (656)
Q Consensus 458 LRLLhNRlLQWR-------FaNARAeaa~~~---q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~ 517 (656)
-.++.|+..+|. -.+.+-+..+.. +...+|++|=..-..++++......-++++|..+.+
T Consensus 379 ~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~e 448 (1293)
T KOG0996|consen 379 AKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTE 448 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHH
Confidence 346777766664 345555554443 445677788888888888888888888888776655
No 141
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=20.73 E-value=8.9e+02 Score=24.53 Aligned_cols=96 Identities=13% Similarity=0.150 Sum_probs=49.9
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHhccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 006213 532 EESALMDRDYSSSLLGAIEALRASTLRLPVVGGARADFQNVKDAISSAVDVMQAMASSICLLLSKAGEVNSLVSELSNVS 611 (656)
Q Consensus 532 E~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~LvsELA~Va 611 (656)
|-|..|| ||-.+|.-+.....--+..|=...- .|.. +.+.. .=+.....+..+.-|+++|..++...+.+=
T Consensus 81 eL~~~le-Ehq~alelIM~KyReq~~~l~~~~k--~~~~---~~~~~---~~~~~~~~~~~~~~kI~EM~~vM~~ai~~d 151 (181)
T PF05769_consen 81 ELRQSLE-EHQSALELIMSKYREQMSQLMMASK--FDDT---EPYLE---ANEQLSKEVQSQAEKICEMAAVMRKAIELD 151 (181)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhh--hhhh---hHHHH---HHHHHHHHHhhHHHHHHHHHHHHHHHHhcc
Confidence 4455444 4556666666665544443322111 1111 11111 122344556666778888887777766643
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhhhhhhh
Q 006213 612 AKEHALLGQCKDLLSTIAAMQVKECSLRTHI 642 (656)
Q Consensus 612 ~qE~~lLeEC~eLL~~va~LqVeE~SLR~~l 642 (656)
.+.- .+.-..++.|..|-.-||-.|
T Consensus 152 e~~~------~~~qe~i~qL~~EN~~LRelL 176 (181)
T PF05769_consen 152 EENS------QEEQEIIAQLETENKGLRELL 176 (181)
T ss_pred hhhh------HhHHHHHHHHHHHHHHHHHHH
Confidence 3221 133446677788888888654
No 142
>KOG2001 consensus Gamma-tubulin complex, DGRIP84/SPC97 component [Cytoskeleton]
Probab=20.19 E-value=1.7e+03 Score=27.52 Aligned_cols=54 Identities=19% Similarity=0.340 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH-----HHHHHHhhhhh------HHHHhhhhhhh
Q 006213 485 NAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKL-----TSILKSQMTFL------EESALMDRDYS 542 (656)
Q Consensus 485 ~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL-----~~IL~~Qm~~L------E~W~~LE~ehs 542 (656)
-.|++|+++|....+.|.+-..++ |..+...+| +.|.+-+ .|+ -.|..||..+-
T Consensus 542 hVerqL~~~W~~~~~~r~~~~~~~---q~~r~s~~LR~RMl~fiqsi~-~Y~~~eViEp~W~~l~~~l~ 606 (734)
T KOG2001|consen 542 HVERQLCETWQSHSKARSSNTKGA---QIVRASFLLRQRMLNFIQSIE-YYMTQEVIEPNWHSLEKCLK 606 (734)
T ss_pred HHHHHHHHHHHhhhhhhccchHHH---HHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcchHHHHHHHhh
Confidence 469999999999999884433332 223333332 3333332 232 36998888773
No 143
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=20.14 E-value=2.9e+02 Score=25.53 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHh
Q 006213 495 IASSRLRESVRTKRTELQLLKQNL 518 (656)
Q Consensus 495 ~~is~LR~sVa~KRieLq~lkq~~ 518 (656)
..+.+|+..+...+-+++.++++.
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n 50 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARN 50 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777776663
No 144
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=20.12 E-value=6e+02 Score=24.26 Aligned_cols=36 Identities=19% Similarity=0.400 Sum_probs=28.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHhH-HHHHHHHhhhhhHH
Q 006213 498 SRLRESVRTKRTELQLLKQNLK-LTSILKSQMTFLEE 533 (656)
Q Consensus 498 s~LR~sVa~KRieLq~lkq~~K-L~~IL~~Qm~~LE~ 533 (656)
..|..-+..|+.||++++-+.- |..|...|..+++.
T Consensus 83 q~lq~~I~Ek~~eLERl~~E~~sL~kve~eQ~~~i~~ 119 (120)
T PF14931_consen 83 QQLQALIAEKKMELERLRSEYESLQKVEQEQNELIQK 119 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566778889999999998866 88888888888764
No 145
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.11 E-value=1.3e+03 Score=26.20 Aligned_cols=75 Identities=17% Similarity=0.236 Sum_probs=36.7
Q ss_pred HHHHHhHHHHHHHHhhhhhHHHHhhhh---hhhhhHHHHHHHH---HhccccccccCCcccchHHHHHHHHHHHHHHHHH
Q 006213 513 LLKQNLKLTSILKSQMTFLEESALMDR---DYSSSLLGAIEAL---RASTLRLPVVGGARADFQNVKDAISSAVDVMQAM 586 (656)
Q Consensus 513 ~lkq~~KL~~IL~~Qm~~LE~W~~LE~---ehsssLs~a~eAL---~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i 586 (656)
..++...|...+..=-..|..|+.+|. +-..++.++..+. ......+. +.-|...+.+.+..=++.++.+
T Consensus 300 ~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~----~~~~~~~~~~~l~~~i~~~~~~ 375 (503)
T KOG2273|consen 300 LVKRRRELASNLAELGKALAQLSALEGETDELSEALSGLAKVIESLSKLLEKLT----AEKDSKKLAEQLREYIRYLESV 375 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhh----hhhhHHHhHHHHHHHHHHHHHH
Confidence 334444455555554457788888777 3444444433332 22222222 4455555555555555554444
Q ss_pred HHHHH
Q 006213 587 ASSIC 591 (656)
Q Consensus 587 ~ssi~ 591 (656)
.....
T Consensus 376 k~~~~ 380 (503)
T KOG2273|consen 376 KSLFE 380 (503)
T ss_pred HHHHH
Confidence 44333
Done!