Query 006213
Match_columns 656
No_of_seqs 109 out of 123
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 19:02:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006213.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006213hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zww_A SH3-containing GRB2-lik 71.5 81 0.0028 31.0 15.0 115 465-629 114-237 (256)
2 3ghg_A Fibrinogen alpha chain; 65.4 10 0.00034 42.4 6.9 123 500-645 62-188 (562)
3 1wlq_A Geminin; coiled-coil; 2 59.5 26 0.00089 30.4 7.0 46 488-533 31-76 (83)
4 1nfv_A Bacterioferritin; 24 su 54.6 1.3E+02 0.0043 27.4 15.1 103 530-634 48-152 (179)
5 1deq_A Fibrinogen (alpha chain 54.2 1.2E+02 0.0039 32.9 12.3 54 571-634 124-177 (390)
6 2z0v_A SH3-containing GRB2-lik 53.1 1.7E+02 0.0058 28.5 14.3 57 573-629 164-221 (240)
7 2y3q_A Bacterioferritin; metal 52.9 1.2E+02 0.004 26.6 11.9 104 530-635 43-148 (158)
8 2jd6_0 Ferritin homolog, ferri 50.3 1.4E+02 0.0049 27.0 11.0 102 530-632 42-145 (174)
9 4hpq_C ATG17, KLTH0D15642P; au 46.5 3.1E+02 0.011 29.6 18.0 115 485-599 26-163 (413)
10 2yfa_A MCPS, methyl-accepting 45.0 2E+02 0.0068 27.1 11.5 17 455-471 8-24 (258)
11 3uoi_A Bacterioferritin, BFR; 44.4 1.7E+02 0.0057 25.9 11.9 103 530-634 45-149 (161)
12 3uno_A Probable bacterioferrit 41.0 2.4E+02 0.0083 26.8 13.5 97 535-632 52-150 (189)
13 1jgc_A Bacterioferritin, BFR; 40.5 1.9E+02 0.0064 25.3 16.8 105 530-636 43-149 (161)
14 1wp7_A Fusion protein; fusion 39.9 28 0.00096 30.5 4.1 61 569-629 22-83 (89)
15 3ka8_A Ferritin, middle subuni 39.7 2.4E+02 0.0082 26.3 11.2 97 535-632 56-156 (176)
16 2vzb_A Putative bacterioferrit 37.9 2.1E+02 0.0073 25.3 11.5 101 530-631 54-163 (170)
17 3oj5_A Ferritin family protein 36.7 2.6E+02 0.0089 25.9 14.5 102 530-632 47-150 (189)
18 3l39_A Putative PHOU-like phos 35.6 2.3E+02 0.008 27.3 10.5 54 556-614 86-139 (227)
19 2d4y_A HAP1, flagellar HOOK-as 35.5 4.3E+02 0.015 28.1 13.7 125 461-611 2-149 (463)
20 1orj_A Flagellar protein FLIS; 34.9 68 0.0023 29.3 6.1 79 545-629 26-114 (130)
21 2p0v_A Hypothetical protein BT 33.0 37 0.0013 37.6 4.7 84 500-585 108-219 (489)
22 2cih_A Ferritin heavy chain; a 32.3 3.2E+02 0.011 25.6 11.3 98 535-633 60-161 (183)
23 1t6f_A Geminin; coiled-coil, c 32.1 81 0.0028 23.6 4.9 30 490-519 2-31 (37)
24 2dfs_A Myosin-5A; myosin-V, in 30.8 3.8E+02 0.013 32.2 13.1 20 626-645 1023-1042(1080)
25 2zxx_A Geminin; coiled-coil, c 30.5 1.1E+02 0.0038 26.2 6.3 46 488-533 27-72 (79)
26 1m1j_B Fibrinogen beta chain; 29.5 6E+02 0.021 27.9 13.4 10 446-455 58-67 (464)
27 1rcd_A L ferritin; iron storag 28.4 3.6E+02 0.012 24.9 11.8 98 535-633 56-157 (173)
28 2wvr_A Geminin; DNA replicatio 27.8 1.4E+02 0.0048 29.8 7.3 46 488-533 108-153 (209)
29 2qqy_A Sigma B operon; dodecam 27.7 2.9E+02 0.0098 23.6 10.0 94 530-627 47-143 (149)
30 1dn1_B Syntaxin 1A, syntaxin b 27.7 4.6E+02 0.016 26.0 12.8 44 578-621 190-233 (267)
31 1vh6_A Flagellar protein FLIS; 27.3 3.5E+02 0.012 24.9 9.7 64 566-629 46-114 (145)
32 3kxu_A Ferritin; iron storage 27.2 4.1E+02 0.014 25.3 11.0 97 535-632 56-156 (191)
33 1uii_A Geminin; human, DNA rep 27.0 1.8E+02 0.0062 25.2 7.0 44 488-531 39-82 (83)
34 3ter_A Mammalian stromal inter 26.3 2.3E+02 0.0079 26.5 8.1 62 480-541 51-127 (136)
35 2dfs_A Myosin-5A; myosin-V, in 25.4 9.4E+02 0.032 28.9 15.7 11 466-476 893-905 (1080)
36 4am5_A Bacterioferritin; metal 25.4 3.7E+02 0.013 24.1 13.3 104 535-641 48-153 (159)
37 3oyv_A Imelysin; outer membran 25.4 6.1E+02 0.021 26.7 13.3 99 530-632 152-260 (361)
38 3oja_B Anopheles plasmodium-re 24.0 6.7E+02 0.023 26.7 12.6 17 501-517 455-471 (597)
39 2v2p_A Ferritin light chain; m 23.7 4.3E+02 0.015 24.3 12.2 99 535-634 55-157 (174)
40 3teq_A Stromal interaction mol 23.4 2.1E+02 0.007 25.7 6.9 61 480-540 20-93 (101)
41 3i9w_A Sensor protein TORS; st 23.4 6.2E+02 0.021 26.0 15.6 29 459-487 100-128 (290)
42 2vxx_A Starvation induced DNA 23.3 4.5E+02 0.015 24.4 13.0 95 530-625 65-169 (192)
43 3vkg_A Dynein heavy chain, cyt 21.6 1.7E+03 0.057 30.4 20.8 41 488-528 1927-1969(3245)
44 3aco_A Pacsin2, protein kinase 21.3 6.3E+02 0.022 25.4 11.2 27 528-554 49-75 (350)
45 3efg_A Protein SLYX homolog; x 20.9 2.1E+02 0.0071 24.1 6.2 42 479-520 12-53 (78)
No 1
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=71.50 E-value=81 Score=31.03 Aligned_cols=115 Identities=10% Similarity=0.058 Sum_probs=72.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhhhhHHHHh
Q 006213 465 LLQWRFVNARANAALSAQRLNAERSLYN--------AWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQMTFLEESAL 536 (656)
Q Consensus 465 lLQWRFaNARAeaa~~~q~~~AE~~Ly~--------~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LE~W~~ 536 (656)
+.+|--+..+-..+...+....+..+.. -|..|.+.|+.+..+|+.+...|.++|=
T Consensus 114 L~~~g~a~~~la~~~~~~~~~i~~~~l~pl~~~l~~~~k~i~k~rkkl~~~rLdyD~~k~k~~k---------------- 177 (256)
T 1zww_A 114 LGEVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFGYKKKRQGK---------------- 177 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTTT----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------
Confidence 3444444444444444444444444333 5666677888888888888887765430
Q ss_pred hhhhhhhhHHHHHHHHHhccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHHHHHHHHHHH
Q 006213 537 MDRDYSSSLLGAIEALRASTLRLPVVGGARADFQNVKDAISSAVDVMQAMASSICLLLSKAGEV-NSLVSELSNVSAKEH 615 (656)
Q Consensus 537 LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~-~~LvsELA~Va~qE~ 615 (656)
.+ .+.|..|.+-.+.....+...|+.+-+. ...+..|...+.-+.
T Consensus 178 ---------------------------~~-------eeEle~A~~~fe~~~e~~~~~m~~l~~~e~e~~~~L~~~v~aQl 223 (256)
T 1zww_A 178 ---------------------------IP-------DEELRQALEKFDESKEIAESSMFNLLEMDIEQVSQLSALVQAQL 223 (256)
T ss_dssp ---------------------------SC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred ---------------------------cc-------HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 01 3445555555555555555555555554 455688899999999
Q ss_pred HHHHHHHHHHHHHH
Q 006213 616 ALLGQCKDLLSTIA 629 (656)
Q Consensus 616 ~lLeEC~eLL~~va 629 (656)
...++|-++|..+.
T Consensus 224 ~y~~~~~e~L~~l~ 237 (256)
T 1zww_A 224 EYHKQAVQILQQVT 237 (256)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998763
No 2
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=65.38 E-value=10 Score=42.44 Aligned_cols=123 Identities=15% Similarity=0.160 Sum_probs=73.7
Q ss_pred HHHHHHHhHHHHHHHHHHhH-HHHHHHHhhhhhHHHHhhhhhhhhhHHHHHHHHHhccccccccCCcccchHHHHHHHHH
Q 006213 500 LRESVRTKRTELQLLKQNLK-LTSILKSQMTFLEESALMDRDYSSSLLGAIEALRASTLRLPVVGGARADFQNVKDAISS 578 (656)
Q Consensus 500 LR~sVa~KRieLq~lkq~~K-L~~IL~~Qm~~LE~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~slk~AL~s 578 (656)
|.+.|...|-+|+.+++..| .+.+.+..|.+|.+=-.-..++-+.+..+.+-|+- .++.|++-|..
T Consensus 62 ltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRR-------------rIqyLKekVdn 128 (562)
T 3ghg_A 62 FTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRS-------------RIEVLKRKVIE 128 (562)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHH-------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH-------------HHHHHHHHHHH
Confidence 34445555555555555555 55666777777743333333555566666666654 34567777777
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhh---hhhhhhhc
Q 006213 579 AVDVMQAMASSICLLLSKAGEVNSLVSELSNVSAKEHALLGQCKDLLSTIAAMQVKECS---LRTHILQS 645 (656)
Q Consensus 579 AvdvMq~i~ssi~~llpKvee~~~LvsELA~Va~qE~~lLeEC~eLL~~va~LqVeE~S---LR~~lIQ~ 645 (656)
=+..++.+.++|..++.|++..+.-|. .-|+.|+.=-....+-+|.-.+ ++-||.|+
T Consensus 129 QlsnIrvLQsnLedq~~kIQRLEvDId----------iqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv 188 (562)
T 3ghg_A 129 KVQHIQLLQKNVRAQLVDMKRLEVDID----------IKIRSCRGSCSRALAREVDLKDYEDQQKQLEQV 188 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHhccccccchheeecchHHHHHHHHHHHHH
Confidence 778888888888888888887765543 2366676655555555543333 34444444
No 3
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=59.46 E-value=26 Score=30.43 Aligned_cols=46 Identities=20% Similarity=0.408 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhhhhHH
Q 006213 488 RSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQMTFLEE 533 (656)
Q Consensus 488 ~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LE~ 533 (656)
+-||.+...+.+|++.|..|+=|+..+|.+.+...-|-.|..||.+
T Consensus 31 ~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la~ 76 (83)
T 1wlq_A 31 KALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAE 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999988865
No 4
>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A*
Probab=54.59 E-value=1.3e+02 Score=27.40 Aligned_cols=103 Identities=16% Similarity=0.101 Sum_probs=69.3
Q ss_pred hhHHHHhhhhhhhhhHHHHHHHHHhccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH-H-HHHHHH
Q 006213 530 FLEESALMDRDYSSSLLGAIEALRASTLRLPVVGGARADFQNVKDAISSAVDVMQAMASSICLLLSKAGEV-N-SLVSEL 607 (656)
Q Consensus 530 ~LE~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~-~-~LvsEL 607 (656)
++++-+.-|.+|..-|...+..|-.... +........+ .++.++|..+++.-..+...+..+...+++. + ....-|
T Consensus 48 ~f~~~a~eE~~Ha~~l~e~i~~lgg~p~-~~~~~~~~~~-~~~~e~l~~al~~E~~~~~~y~~l~~~a~~~~D~~t~~~l 125 (179)
T 1nfv_A 48 NMKLIAIDEMRHAENFAERIKELGGEPT-TQKEGKVVTG-QAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLF 125 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCC-CCCSSCCCCS-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCc-CCCCCcCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4566677889999888888877644311 1111111222 4688999999999998888888888876543 2 233334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 006213 608 SNVSAKEHALLGQCKDLLSTIAAMQVK 634 (656)
Q Consensus 608 A~Va~qE~~lLeEC~eLL~~va~LqVe 634 (656)
-.++..|...+..-.++|..+..+..+
T Consensus 126 ~~~~~eEe~h~~~l~~~l~~l~~~g~~ 152 (179)
T 1nfv_A 126 ERIIEEEQAHLTYYENIGSHIKNLGDT 152 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHH
Confidence 566677888888888888887776654
No 5
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=54.24 E-value=1.2e+02 Score=32.90 Aligned_cols=54 Identities=11% Similarity=0.145 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 006213 571 NVKDAISSAVDVMQAMASSICLLLSKAGEVNSLVSELSNVSAKEHALLGQCKDLLSTIAAMQVK 634 (656)
Q Consensus 571 slk~AL~sAvdvMq~i~ssi~~llpKvee~~~LvsELA~Va~qE~~lLeEC~eLL~~va~LqVe 634 (656)
.|++-|..=+.-|..|...|+.++.|++.++.-| ...+.=|.--....-.++|.
T Consensus 124 ~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I----------d~c~~~C~~sC~~~l~~~vD 177 (390)
T 1deq_A 124 ILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI----------DIKIRSCKGSCSRALEHKVD 177 (390)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHhcccccccchhhhhhcc
Confidence 4555555555567777777777777777776666 23344455555555445443
No 6
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=53.08 E-value=1.7e+02 Score=28.48 Aligned_cols=57 Identities=14% Similarity=0.088 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006213 573 KDAISSAVDVMQAMASSICLLLSKAGEV-NSLVSELSNVSAKEHALLGQCKDLLSTIA 629 (656)
Q Consensus 573 k~AL~sAvdvMq~i~ssi~~llpKvee~-~~LvsELA~Va~qE~~lLeEC~eLL~~va 629 (656)
.+.|..|-+.++.........|+.+.+. ...+..|...+.-.....++|-++|..+.
T Consensus 164 eeEl~~A~~~fe~~~e~~~~~m~~~~~~~~e~l~~l~~~v~aQl~y~~~~~e~L~~l~ 221 (240)
T 2z0v_A 164 DEEVRQAVEKFEESKELAERSMFNFLENDVEQVSQLAVFIEAALDYHRQSTEILQELQ 221 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555 45566899999999999999999998763
No 7
>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A*
Probab=52.87 E-value=1.2e+02 Score=26.58 Aligned_cols=104 Identities=12% Similarity=0.094 Sum_probs=68.5
Q ss_pred hhHHHHhhhhhhhhhHHHHHHHHHhccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH-H-HHHHHH
Q 006213 530 FLEESALMDRDYSSSLLGAIEALRASTLRLPVVGGARADFQNVKDAISSAVDVMQAMASSICLLLSKAGEV-N-SLVSEL 607 (656)
Q Consensus 530 ~LE~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~-~-~LvsEL 607 (656)
++++-+.=|.+|..-+...+..|-....--++ .....+ .++.++|..+++.-..+...+..+...+++. + ....-|
T Consensus 43 ~f~~~a~ee~~Ha~~l~e~i~~lgg~p~~~~~-~~~~~~-~~~~e~l~~~l~~E~~~~~~y~~~~~~a~~~~D~~t~~~l 120 (158)
T 2y3q_A 43 VEYHESIDEMKHADRYIERILFLEGLPNLQDL-GKLNIG-EDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMM 120 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCC-CCCCCC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcCCCC-CcCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45556677888888888887776543211111 111222 4678888899998888888888888877653 2 233344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 006213 608 SNVSAKEHALLGQCKDLLSTIAAMQVKE 635 (656)
Q Consensus 608 A~Va~qE~~lLeEC~eLL~~va~LqVeE 635 (656)
-.++..|...+..-+++|..+..+..++
T Consensus 121 ~~~~~ee~~h~~~l~~~l~~l~~~g~~~ 148 (158)
T 2y3q_A 121 IEILRDEEGHIDWLETELDLIQKMGLQN 148 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 4677778888888888888877776443
No 8
>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon, entry channels, thermostability, hyperthermophIle, ferroxidase center; 2.75A {Pyrococcus furiosus} PDB: 2jd7_0 2jd8_0 2x17_0
Probab=50.25 E-value=1.4e+02 Score=27.00 Aligned_cols=102 Identities=12% Similarity=0.072 Sum_probs=67.6
Q ss_pred hhHHHHhhhhhhhhhHHHHHHHHHhccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHHHH
Q 006213 530 FLEESALMDRDYSSSLLGAIEALRASTLRLPVVGGARADFQNVKDAISSAVDVMQAMASSICLLLSKAGEV-NSLVSELS 608 (656)
Q Consensus 530 ~LE~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~-~~LvsELA 608 (656)
++++-+.=|.+|..-+..-+..|-.... +.-......+..++.++|..+++.-..+...+..+...+++- +....++-
T Consensus 42 ~f~~~a~ee~~had~laeri~~lGg~p~-~~~i~~~~~~~~~~~e~l~~~l~~E~~~~~~~~~~~~~A~~~~D~~t~~~l 120 (174)
T 2jd6_0 42 WMKAQAEEEIGHALRFYNYIYDRNGRVE-LDEIPKPPKEWESPLKAFEAAYEHEKFISKSIYELAALAEEEKDYSTRAFL 120 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCC-CCCBCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccc-cCCCCCCCcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHH
Confidence 4566677788888888888877765532 211122233445788999999999999999999988877664 33333333
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhH
Q 006213 609 -NVSAKEHALLGQCKDLLSTIAAMQ 632 (656)
Q Consensus 609 -~Va~qE~~lLeEC~eLL~~va~Lq 632 (656)
.++.+|...+...+++|..+..+.
T Consensus 121 ~~~l~eq~e~~~~l~~~l~~l~~~g 145 (174)
T 2jd6_0 121 EWFINEQVEEEASVKKILDKLKFAK 145 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 455555566666777777766554
No 9
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=46.46 E-value=3.1e+02 Score=29.62 Aligned_cols=115 Identities=12% Similarity=0.136 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHH--HHHHhhhh---hHHHH-----hhhhhh---hhhHHHHHHH
Q 006213 485 NAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTS--ILKSQMTF---LEESA-----LMDRDY---SSSLLGAIEA 551 (656)
Q Consensus 485 ~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~--IL~~Qm~~---LE~W~-----~LE~eh---sssLs~a~eA 551 (656)
.|...|.++=..+.++-+.+..-+.-+..+++..++.. ||+.-+.- =.+|+ +|..+- -.-|...++.
T Consensus 26 ~A~~~l~~t~~~L~~~~~~~~k~~Fl~~~l~~Q~~~L~~~ilr~~i~~~li~~e~~~~~f~~lv~~l~~~~~~L~~~~~~ 105 (413)
T 4hpq_C 26 ESNDHLTTTKLRIREWQKFQSKLHFVLDCIQQQTKFLSEILLREGIGRNLIEEEWSQTVLVRLVNDMKFWQNEITKMMNK 105 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888888888877777777777777777666554 33222111 01242 122221 2357788888
Q ss_pred HHhccccccccCC-------cccchHHHHHHHHHH--HHH-HHHHHHHHHHhhhhhhh
Q 006213 552 LRASTLRLPVVGG-------ARADFQNVKDAISSA--VDV-MQAMASSICLLLSKAGE 599 (656)
Q Consensus 552 L~AatlRLPv~~G-------AkaD~~slk~AL~sA--vdv-Mq~i~ssi~~llpKvee 599 (656)
|..+..-+=+.|+ ...+++.|++.|... ++- ++.|......++-|+.+
T Consensus 106 Lr~T~v~~~~~~~k~L~DFIs~~sv~~L~~kLke~p~I~~~i~~i~~~y~~~l~~~~~ 163 (413)
T 4hpq_C 106 LDNITNEIDQQHNSKLGDFISRDSSHILDSKLNEIPTIRKQVENITRQYQTMLAKVQS 163 (413)
T ss_dssp HHTSCCCCSSSCCCTTTTSSCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCccccCCCCcHHHHcCHhhHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHH
Confidence 8887765555332 245677889999988 775 77788777777777743
No 10
>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor, chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A
Probab=44.97 E-value=2e+02 Score=27.13 Aligned_cols=17 Identities=12% Similarity=-0.160 Sum_probs=2.7
Q ss_pred hhhhhhhhcchhhHHHH
Q 006213 455 AHLLRLFHNRLLQWRFV 471 (656)
Q Consensus 455 ~HqLRLLhNRlLQWRFa 471 (656)
.|.|+-+..|.-+-..+
T Consensus 8 ~~~~~~i~~~~~~~~~~ 24 (258)
T 2yfa_A 8 HHHSSGLVPRGSHMGDI 24 (258)
T ss_dssp ----------CHHHHHH
T ss_pred cccHHHHHHHHHHHHHH
Confidence 45555555544443333
No 11
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A*
Probab=44.38 E-value=1.7e+02 Score=25.88 Aligned_cols=103 Identities=10% Similarity=0.101 Sum_probs=69.8
Q ss_pred hhHHHHhhhhhhhhhHHHHHHHHHhccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH--HHHHHHH
Q 006213 530 FLEESALMDRDYSSSLLGAIEALRASTLRLPVVGGARADFQNVKDAISSAVDVMQAMASSICLLLSKAGEV--NSLVSEL 607 (656)
Q Consensus 530 ~LE~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~--~~LvsEL 607 (656)
++++-..=|.+|..-|...+..|-....--++ .....+ .++.++|..+++.-..+...+..+...+++. .....=|
T Consensus 45 ~f~~~a~ee~~Had~l~e~i~~lGg~p~~~~~-~~~~~~-~~~~e~l~~~l~~E~~~~~~~~~~~~~A~~~~D~~t~~~l 122 (161)
T 3uoi_A 45 HTRAESFDEMRHAEEITDRILLLDGLPNYQRI-GSLRIG-QTLREQFEADLAIEYDVLNRLKPGIVMCREKQDTTSAVLL 122 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCC-CCCCCC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcCCCC-CCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34455667788888887777776542211111 222233 5788899999999888888888888777653 3344456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 006213 608 SNVSAKEHALLGQCKDLLSTIAAMQVK 634 (656)
Q Consensus 608 A~Va~qE~~lLeEC~eLL~~va~LqVe 634 (656)
-.++..|.......+++|..+..+-++
T Consensus 123 ~~~~~eee~h~~~l~~~l~~i~~~g~~ 149 (161)
T 3uoi_A 123 EKIVADEEEHIDYLETQLELMDKLGEE 149 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 667777888888888888888777553
No 12
>3uno_A Probable bacterioferritin BFRB; ferroxidase activity, iron storage, oxidoreductase; 2.50A {Mycobacterium tuberculosis} PDB: 3oj5_A 3qd8_A
Probab=41.01 E-value=2.4e+02 Score=26.77 Aligned_cols=97 Identities=14% Similarity=0.167 Sum_probs=70.1
Q ss_pred HhhhhhhhhhHHHHHHHHHhccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHH-HHHHHH
Q 006213 535 ALMDRDYSSSLLGAIEALRASTLRLPVVGGARADFQNVKDAISSAVDVMQAMASSICLLLSKAGEV-NSLVSE-LSNVSA 612 (656)
Q Consensus 535 ~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~-~~LvsE-LA~Va~ 612 (656)
+.=|.+|+.-|-.-+..+..... |+-....+.+..++.++|..|++.=..+...+..+.-.+++- +...++ |-....
T Consensus 52 A~EE~~HA~~l~~~i~~rGG~~~-l~~i~~p~~~~~s~~e~le~aL~~Ek~v~~~l~~l~~la~~~~D~~t~~fLe~fL~ 130 (189)
T 3uno_A 52 AVEERNHAMMLVQHLLDRDLRVE-IPGVDTVRNQFDRPREALALALDQERTVTDQVGRLTAVARDEGDFLGEQFMQWFLQ 130 (189)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCC-CCCBCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCcc-cCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45577888888777777766543 222233355667899999999999888888888888877753 444444 446777
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 006213 613 KEHALLGQCKDLLSTIAAMQ 632 (656)
Q Consensus 613 qE~~lLeEC~eLL~~va~Lq 632 (656)
+|...+++.+++|..+..+-
T Consensus 131 EQve~~~~l~~~l~~l~~~g 150 (189)
T 3uno_A 131 EQIEEVALMATLVRVADRAG 150 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 78888889999998887775
No 13
>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein; HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1
Probab=40.47 E-value=1.9e+02 Score=25.34 Aligned_cols=105 Identities=8% Similarity=0.027 Sum_probs=71.2
Q ss_pred hhHHHHhhhhhhhhhHHHHHHHHHhccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH-H-HHHHHH
Q 006213 530 FLEESALMDRDYSSSLLGAIEALRASTLRLPVVGGARADFQNVKDAISSAVDVMQAMASSICLLLSKAGEV-N-SLVSEL 607 (656)
Q Consensus 530 ~LE~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~-~-~LvsEL 607 (656)
++++...=|.+|..-|...+..|-....--+ ......+ .++.++|..+++.-+.+...+..+...+++- + ....-|
T Consensus 43 ~f~~~a~ee~~Ha~~l~e~i~~lgg~p~~~~-~~~~~~~-~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~~D~~t~~~l 120 (161)
T 1jgc_A 43 KSREESIEEMGHADKIIARILFLEGHPNLQK-LDPLRIG-EGPRETLECDLAGEHDALKLYREARDYCAEVGDIVSKNIF 120 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCCSC-CCCCCCC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcCCC-CCcCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4667788889999888887777654321111 1112222 4678888888888888888888888877653 2 233334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 006213 608 SNVSAKEHALLGQCKDLLSTIAAMQVKEC 636 (656)
Q Consensus 608 A~Va~qE~~lLeEC~eLL~~va~LqVeE~ 636 (656)
-.++..|...+...+++|..+..+-.+++
T Consensus 121 ~~~~~ee~~h~~~l~~~l~~l~~~g~~~y 149 (161)
T 1jgc_A 121 ESLITDEEGHVDFLETQISLYDRLGPQGF 149 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 46777888888888888888877765555
No 14
>1wp7_A Fusion protein; fusion core, heptad repeat, viral protein; 2.20A {Nipah virus} PDB: 1wp8_A
Probab=39.90 E-value=28 Score=30.53 Aligned_cols=61 Identities=13% Similarity=0.176 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006213 569 FQNVKDAISSAVDVMQAMASSICL-LLSKAGEVNSLVSELSNVSAKEHALLGQCKDLLSTIA 629 (656)
Q Consensus 569 ~~slk~AL~sAvdvMq~i~ssi~~-llpKvee~~~LvsELA~Va~qE~~lLeEC~eLL~~va 629 (656)
+++|.++++.-+=.+++|-.-|.+ |.|-+.+++.-++.+-.-..|-+..+.|+..||.++-
T Consensus 22 V~EVt~glsqlaVAIqaIQD~IN~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (89)
T 1wp7_A 22 VVKLQETAEKTVYVLTALQDYGGSGGSGGKVDISSQISSMNQSLQQSKDYIKEAQRLLDTVN 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 345555555555555555554443 4466778888888888889999999999999997653
No 15
>3ka8_A Ferritin, middle subunit; iron storage, DIIRON, iron, metal-binding, oxidoreductase; 1.35A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 3ka9_A 3ka3_A 1mfr_A 3ka4_A 3rbc_A 3re7_A 3rgd_A 4das_A* 3ka6_A 3shx_A 3sh6_A 3se1_A 1bg7_A
Probab=39.65 E-value=2.4e+02 Score=26.31 Aligned_cols=97 Identities=9% Similarity=0.190 Sum_probs=70.5
Q ss_pred HhhhhhhhhhHHHHHHHHHhccccccccCCc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHHHHH--H
Q 006213 535 ALMDRDYSSSLLGAIEALRASTLRLPVVGGA-RADFQNVKDAISSAVDVMQAMASSICLLLSKAGEV-NSLVSELSN--V 610 (656)
Q Consensus 535 ~~LE~ehsssLs~a~eAL~AatlRLPv~~GA-kaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~-~~LvsELA~--V 610 (656)
+.=|.+|+.-|-.-+..+..... |+-.... +.+..++.++|..|+++=..+...|..+.--+++. +...+++-+ .
T Consensus 56 s~EE~~HA~kl~~~i~~rgg~~~-l~~i~~p~~~~~~~~~e~le~aL~~Ek~v~~~l~~l~~la~~~~D~~t~~fLe~~f 134 (176)
T 3ka8_A 56 SHEEREHAEKFMKYQNKRGGRVV-LQDIKKPERDEWGNTLEAMQAALQLEKTVNQALLDLHKLATDKVDPHLCDFLESEY 134 (176)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCC-CCCCCCCSCSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCee-eCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Confidence 55577888777777777665433 2222222 44567899999999999999999999988887654 666666654 6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 006213 611 SAKEHALLGQCKDLLSTIAAMQ 632 (656)
Q Consensus 611 a~qE~~lLeEC~eLL~~va~Lq 632 (656)
..+|...+.+..++|..+..+-
T Consensus 135 l~eQve~~~~l~~~l~~l~~~g 156 (176)
T 3ka8_A 135 LEEQVKHIKRIGDFITNLKRLG 156 (176)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 7778888888888888877664
No 16
>2vzb_A Putative bacterioferritin-related protein; DPS, DPSL, iron, oxidative stress, metal transport; 2.30A {Bacteroides fragilis}
Probab=37.91 E-value=2.1e+02 Score=25.27 Aligned_cols=101 Identities=16% Similarity=0.136 Sum_probs=61.5
Q ss_pred hhHHHHhhhhhhhhhHHHHHHHHHhcccccc-----c--cCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 006213 530 FLEESALMDRDYSSSLLGAIEALRASTLRLP-----V--VGG-ARADFQNVKDAISSAVDVMQAMASSICLLLSKAGEVN 601 (656)
Q Consensus 530 ~LE~W~~LE~ehsssLs~a~eAL~AatlRLP-----v--~~G-AkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~ 601 (656)
+|++.+.-|.+|..-|...+..|-....--+ . .+. ...+. .+.++|..+++.-+.+...+..+...+++-+
T Consensus 54 ~f~~~a~ee~~Had~lae~i~~lGg~p~~~~~~~~~~~~~~~~~~~~~-~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~D 132 (170)
T 2vzb_A 54 EFEEHAEEERHHAQLIADRIIELEGVPVLDPKKWFELARCKYDSPTAF-DSVSLLNQNVSSERCAILRYQEIANFTNGKD 132 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCCCGGGHHHHCSSCCCCCCSC-BHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccCCCHHHHHHhhcCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 5677788888999888888877653211100 0 000 11112 4788888888888888888888888775433
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 006213 602 SLVSE-LSNVSAKEHALLGQCKDLLSTIAAM 631 (656)
Q Consensus 602 ~LvsE-LA~Va~qE~~lLeEC~eLL~~va~L 631 (656)
....+ |-.++..|...+...+++|..+..+
T Consensus 133 ~~t~~~l~~~~~ee~~h~~~l~~~l~~l~~~ 163 (170)
T 2vzb_A 133 YTTCDIAKHILAEEEEHEQDLQDYLTDIARM 163 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222 3345555666666666666655443
No 17
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A
Probab=36.69 E-value=2.6e+02 Score=25.91 Aligned_cols=102 Identities=14% Similarity=0.158 Sum_probs=67.5
Q ss_pred hhHHHHhhhhhhhhhHHHHHHHHHhccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHH-H
Q 006213 530 FLEESALMDRDYSSSLLGAIEALRASTLRLPVVGGARADFQNVKDAISSAVDVMQAMASSICLLLSKAGEV-NSLVSE-L 607 (656)
Q Consensus 530 ~LE~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~-~~LvsE-L 607 (656)
++++-..=|.+|..-|..-+..|-.... +.-......+..++.++|..+++.-+.+...+..+.-.+++. +....+ |
T Consensus 47 ~f~~~a~ee~~Had~laeri~~lGg~p~-~~~i~~~~~~~~~~~e~l~~~l~~E~~~~~~~~~l~~~A~~~~D~~t~~~l 125 (189)
T 3oj5_A 47 HFYSQAVEERNHAMMLVQHLLDRDLRVE-IPGVDTVRNQFDRPREALALALDQERTVTDQVGRLTAVARDEGDFLGEQFM 125 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCC-CCCBCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCee-cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHH
Confidence 4556667788888888888887766532 211122233345788999999999999999999988877664 332222 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Q 006213 608 SNVSAKEHALLGQCKDLLSTIAAMQ 632 (656)
Q Consensus 608 A~Va~qE~~lLeEC~eLL~~va~Lq 632 (656)
-.++..|...+...+++|..+..+-
T Consensus 126 ~~~l~eqe~~~~~l~~~l~~l~~~g 150 (189)
T 3oj5_A 126 QWFLQEQIEEVALMATLVRVADRAG 150 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3556666666667777777666543
No 18
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=35.58 E-value=2.3e+02 Score=27.32 Aligned_cols=54 Identities=20% Similarity=0.314 Sum_probs=30.8
Q ss_pred cccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 006213 556 TLRLPVVGGARADFQNVKDAISSAVDVMQAMASSICLLLSKAGEVNSLVSELSNVSAKE 614 (656)
Q Consensus 556 tlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~~LvsELA~Va~qE 614 (656)
+.-.|+. +-|+..|...|...+|.++.+..-+..+- ++++...+.+|++++.+-
T Consensus 86 ~fitP~d---ReDI~~L~~~lDdI~D~ie~~a~~l~l~~--~~~~~~~~~~l~~~i~~~ 139 (227)
T 3l39_A 86 TFITPFD---REDIHDLASCMDDVIDGINSSAKRIVIYN--PRPISESGKELSRLIHEE 139 (227)
T ss_dssp CSCCSSC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CSSCCHHHHHHHHHHHHH
T ss_pred cCcCCCC---HHHHHHHHHHHHHHHHHHHHHHHHhhccC--CCCCCHHHHHHHHHHHHH
Confidence 3445553 55666777777777777777666665443 334445555555554443
No 19
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=35.46 E-value=4.3e+02 Score=28.08 Aligned_cols=125 Identities=14% Similarity=0.144 Sum_probs=0.0
Q ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----h
Q 006213 461 FHNRLLQWRFVNARANAALSAQRLNAE------------------RSLYNAWIASSRLRESVRTKRTELQLLKQN----L 518 (656)
Q Consensus 461 LhNRlLQWRFaNARAeaa~~~q~~~AE------------------~~Ly~~W~~is~LR~sVa~KRieLq~lkq~----~ 518 (656)
.|+.||+-+|-++.++......+...= ..+|+.|..++.-=++.+.+-.-|++.+.- .
T Consensus 2 ~~D~fl~~q~r~~~s~~~~~~~~~~~l~~le~~~~~~~~gl~~~l~~ff~alq~la~~P~~~~~R~~vl~~a~~La~~~n 81 (463)
T 2d4y_A 2 EYDAFITNQLRGAQNQSSGLTTRYEQMSKIDNLLADKSSSLSGSLQSFFTSLQTLVSNAEDPAARQALIGKAEGLVNQFK 81 (463)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhhHHHHhhhhhhhhhHHHHHHHHHhcccccccc-CCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006213 519 KLTSILKSQMTFLEESALMDRDYSSSLLGAIEALRASTLRLPVV-GGARADFQNVKDAISSAVDVMQAMASSICLLLSKA 597 (656)
Q Consensus 519 KL~~IL~~Qm~~LE~W~~LE~ehsssLs~a~eAL~AatlRLPv~-~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKv 597 (656)
.+..-|..|..-+++=-...-+..+.|..-|..|..-+.+.-.. .|..++ |+|+
T Consensus 82 ~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~~~~~~~~g~~~n------------dLlD------------- 136 (463)
T 2d4y_A 82 TTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRMTGVGAGASPN------------DLLD------------- 136 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------C------------HHHH-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCch------------HhHH-------------
Q ss_pred hhHHHHHHHHHHHH
Q 006213 598 GEVNSLVSELSNVS 611 (656)
Q Consensus 598 ee~~~LvsELA~Va 611 (656)
+.+.||.||++.+
T Consensus 137 -qRD~ll~eLS~~v 149 (463)
T 2d4y_A 137 -QRDQLVSELNKIV 149 (463)
T ss_dssp -HHHHHHHHHHHHS
T ss_pred -HHHHHHHHHHhhc
No 20
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP: a.24.19.1 PDB: 1ory_A
Probab=34.91 E-value=68 Score=29.31 Aligned_cols=79 Identities=15% Similarity=0.157 Sum_probs=49.4
Q ss_pred HHHHHHHHHhccccccccCCcccch-HHH---HHHHHHHHHHHHHHHHHHHHh-----hhhhhhH-HHHHHHHHHHHHHH
Q 006213 545 LLGAIEALRASTLRLPVVGGARADF-QNV---KDAISSAVDVMQAMASSICLL-----LSKAGEV-NSLVSELSNVSAKE 614 (656)
Q Consensus 545 Ls~a~eAL~AatlRLPv~~GAkaD~-~sl---k~AL~sAvdvMq~i~ssi~~l-----lpKvee~-~~LvsELA~Va~qE 614 (656)
+.|+++.|..+..-+ ...|+ +.- .+.|..|.+++.++.+++..- -..+..+ ++++.+| .-+...
T Consensus 26 ydgai~~l~~A~~ai-----~~~d~~~~k~~~~~~i~KA~~Ii~eL~~sLd~e~GgeiA~nL~~LY~y~~~~L-An~~~d 99 (130)
T 1orj_A 26 YDKAIECLERAIEIY-----DQVNELEKRKEFVENIDRVYDIISALKSFLDHEKGKEIAKNLDTIYTIILNTL-VKVDKT 99 (130)
T ss_dssp HHHHHHHHHHHHHTG-----GGTTSHHHHHHHHHHHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHH-HCTTCC
T ss_pred HHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHHH-hcccCC
Confidence 345555555444322 23577 777 778999999998888776322 1112222 4555667 444556
Q ss_pred HHHHHHHHHHHHHHH
Q 006213 615 HALLGQCKDLLSTIA 629 (656)
Q Consensus 615 ~~lLeEC~eLL~~va 629 (656)
.+.|+||..+|..+.
T Consensus 100 ~~~l~ev~~ll~~lr 114 (130)
T 1orj_A 100 KEELQKILEILKDLR 114 (130)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 789999999988764
No 21
>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.102.1.8
Probab=33.03 E-value=37 Score=37.64 Aligned_cols=84 Identities=17% Similarity=0.200 Sum_probs=54.3
Q ss_pred HHHHHHHhHHHHHHHHHHhHHHH----HHHHhhhhhHH---------------H---------HhhhhhhhhhHHHHHHH
Q 006213 500 LRESVRTKRTELQLLKQNLKLTS----ILKSQMTFLEE---------------S---------ALMDRDYSSSLLGAIEA 551 (656)
Q Consensus 500 LR~sVa~KRieLq~lkq~~KL~~----IL~~Qm~~LE~---------------W---------~~LE~ehsssLs~a~eA 551 (656)
||||.+|.+-.|.++++.-+|.. +++-|..|... | ...|++| -|+.+.--
T Consensus 108 LRDS~~Q~~pYl~l~~~d~~l~~li~G~i~rq~~~i~~dPYaNAF~~~~~~~~~~~d~t~~~P~v~E~Ky--ElDSla~~ 185 (489)
T 2p0v_A 108 LRDSGAQVWPYVQLANKDPELKKMLAGVINRQFKCINIDPYANAFNMNSEGGEWMSDLTDMKPELHERKW--EIDSLCYP 185 (489)
T ss_dssp HHHHHHHSGGGGGGGGGCHHHHHHHHHHHHHHHHHHHHCTTCSEECSSSCCCGGGGSSSCCCTTEEECCC--CHHHHHHH
T ss_pred hcccHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhccCccccccCCCCCCCCCCCCCCCCCcccccccc--hhhhhHHH
Confidence 69999999999988887655554 55889888765 3 1456666 23333333
Q ss_pred HHhccccccccCCcccchHHHHHHHHHHHHHHHH
Q 006213 552 LRASTLRLPVVGGARADFQNVKDAISSAVDVMQA 585 (656)
Q Consensus 552 L~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~ 585 (656)
|.++-...=.++....--+....||..++++|.+
T Consensus 186 L~la~~Yy~~TgD~~~f~~~w~~av~~il~~l~~ 219 (489)
T 2p0v_A 186 IRLAYHYWKTTGDASVFSDEWLQAIANVLKTFKE 219 (489)
T ss_dssp HHHHHHHHHHHCCCTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHH
Confidence 3333333334455554445777888888888876
No 22
>2cih_A Ferritin heavy chain; apoferritin, ferroxidase, DI-iron non-heme protein, iron storage, iron, metal-binding, oxidoreductase, phosphorylation; 1.5A {Homo sapiens} PDB: 2chi_A 2cei_A 1fha_A 2fha_A 2cn7_A 2iu2_A 2clu_A 2cn6_A 3ajo_A 3ajq_A 3ajp_A 3erz_A 3es3_A 2z6m_A 1r03_A
Probab=32.25 E-value=3.2e+02 Score=25.60 Aligned_cols=98 Identities=11% Similarity=0.167 Sum_probs=69.2
Q ss_pred HhhhhhhhhhHHHHHHHHHhccccccccCCcccc-hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHHHHH--H
Q 006213 535 ALMDRDYSSSLLGAIEALRASTLRLPVVGGARAD-FQNVKDAISSAVDVMQAMASSICLLLSKAGEV-NSLVSELSN--V 610 (656)
Q Consensus 535 ~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD-~~slk~AL~sAvdvMq~i~ssi~~llpKvee~-~~LvsELA~--V 610 (656)
+.=|.+|+.-|-.-+..+-.... |+-......| ..++.++|..|++.=..+...|..+.-.+++- +....++-+ .
T Consensus 60 s~EE~~HA~kl~~~i~~rgg~~~-l~~i~~p~~~~~~~~~e~le~aL~~Ek~v~~~l~~l~~~a~~~~D~~t~~fLe~~f 138 (183)
T 2cih_A 60 SHEEREHAEKLMKLQNQRGGRIF-LQDIQKPDCDDWESGLNAMECALHLEKNVNQSLLELHKLATDKNDPHLCDFIETHY 138 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCC-CCCCCCCSCSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCccc-cCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55577888877777777765432 2222222222 46799999999999999999999998888764 666666654 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Q 006213 611 SAKEHALLGQCKDLLSTIAAMQV 633 (656)
Q Consensus 611 a~qE~~lLeEC~eLL~~va~LqV 633 (656)
..+|...++...++|..+..+-.
T Consensus 139 l~eq~e~~~~l~~~l~~l~~~g~ 161 (183)
T 2cih_A 139 LNEQVKAIKELGDHVTNLRKMGA 161 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 77777788888888887776543
No 23
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=32.12 E-value=81 Score=23.58 Aligned_cols=30 Identities=30% Similarity=0.476 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhH
Q 006213 490 LYNAWIASSRLRESVRTKRTELQLLKQNLK 519 (656)
Q Consensus 490 Ly~~W~~is~LR~sVa~KRieLq~lkq~~K 519 (656)
||.+.....+|.+.+.+|-=|+.+||.+.+
T Consensus 2 L~~~L~ENekLhk~ie~KdeeIa~Lk~eN~ 31 (37)
T 1t6f_A 2 LYEALKENEKLHKEIEQKDNEIARLKKENK 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 899999999999999999999999998764
No 24
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=30.78 E-value=3.8e+02 Score=32.23 Aligned_cols=20 Identities=10% Similarity=0.162 Sum_probs=8.8
Q ss_pred HHHHHhHHhhhhhhhhhhhc
Q 006213 626 STIAAMQVKECSLRTHILQS 645 (656)
Q Consensus 626 ~~va~LqVeE~SLR~~lIQ~ 645 (656)
..+..|+-+-.-||.++-++
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 25
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=30.51 E-value=1.1e+02 Score=26.25 Aligned_cols=46 Identities=20% Similarity=0.408 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhhhhHH
Q 006213 488 RSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQMTFLEE 533 (656)
Q Consensus 488 ~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LE~ 533 (656)
+-|+.+..-.-+|+..|.+|.-++-.+|.+.+-..-|-.|..||.+
T Consensus 27 ~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~lae 72 (79)
T 2zxx_A 27 KALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAE 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999998877777778777754
No 26
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=29.53 E-value=6e+02 Score=27.92 Aligned_cols=10 Identities=40% Similarity=0.222 Sum_probs=1.9
Q ss_pred ccCCccchhh
Q 006213 446 KVGENRVVDA 455 (656)
Q Consensus 446 Kk~~~~~Ed~ 455 (656)
||.+.+.+|+
T Consensus 58 ~~~~~~~~~a 67 (464)
T 1m1j_B 58 KKGPIIYPDA 67 (464)
T ss_dssp -----CCCCC
T ss_pred ccCcccCCCC
Confidence 4444333333
No 27
>1rcd_A L ferritin; iron storage; 2.00A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 1rcg_A 1rci_A 1rcc_A 1rce_A
Probab=28.37 E-value=3.6e+02 Score=24.90 Aligned_cols=98 Identities=10% Similarity=0.176 Sum_probs=69.9
Q ss_pred HhhhhhhhhhHHHHHHHHHhccccccccCCc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHHHHH--H
Q 006213 535 ALMDRDYSSSLLGAIEALRASTLRLPVVGGA-RADFQNVKDAISSAVDVMQAMASSICLLLSKAGEV-NSLVSELSN--V 610 (656)
Q Consensus 535 ~~LE~ehsssLs~a~eAL~AatlRLPv~~GA-kaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~-~~LvsELA~--V 610 (656)
+.=|.+|+.-|..-+..+-....--++ ... +.+..++.++|..|++.=..+...+..+.-.+++. +....++-+ .
T Consensus 56 s~EE~~HA~~l~~~i~~rgg~~~l~~i-~~p~~~~~~~~~e~le~aL~~E~~v~~~l~~l~~~a~~~~D~~t~~fLe~~~ 134 (173)
T 1rcd_A 56 SEEEKEHAEKLIEYQNQRGGRVFLQSV-EKPERDDWANGLEALQTALKLQKSVNQALLDLHAVAADKSDPHMTDFLESPY 134 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCCCC-CCCSCSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCC-CCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455778888888877777665432222 222 44556899999999999999999999998888774 555555554 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Q 006213 611 SAKEHALLGQCKDLLSTIAAMQV 633 (656)
Q Consensus 611 a~qE~~lLeEC~eLL~~va~LqV 633 (656)
..+|...+++..++|..+..+-.
T Consensus 135 l~eq~e~~~~l~~~l~~l~~~g~ 157 (173)
T 1rcd_A 135 LSESVETIKKLGDHITSLKKLWS 157 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 66667777888888887776653
No 28
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=27.79 E-value=1.4e+02 Score=29.77 Aligned_cols=46 Identities=22% Similarity=0.413 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhhhhHH
Q 006213 488 RSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQMTFLEE 533 (656)
Q Consensus 488 ~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~LE~ 533 (656)
+.||.+...+-+|++.|..+.=|+..||++++-..-|-.|..||.+
T Consensus 108 ~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~ 153 (209)
T 2wvr_A 108 KALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAE 153 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999888888888888754
No 29
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str}
Probab=27.75 E-value=2.9e+02 Score=23.64 Aligned_cols=94 Identities=18% Similarity=0.195 Sum_probs=59.7
Q ss_pred hhHHHHhhhhhhhhhHHHHHHHHHhccccccccCCcc-cchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH-H-HHHHH
Q 006213 530 FLEESALMDRDYSSSLLGAIEALRASTLRLPVVGGAR-ADFQNVKDAISSAVDVMQAMASSICLLLSKAGEV-N-SLVSE 606 (656)
Q Consensus 530 ~LE~W~~LE~ehsssLs~a~eAL~AatlRLPv~~GAk-aD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~-~-~LvsE 606 (656)
++++...=|.+|..-+...+..|-.. |...... ....++.++|..+++.-+.+...+..+...+++. + ....-
T Consensus 47 ~f~~~a~ee~~Ha~~l~e~i~~lgg~----p~~~~~~~~~~~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~~D~~t~~~ 122 (149)
T 2qqy_A 47 FFESEISDEQGHALYLAEKIKTLGGT----PTTIPLRVKQAEDVREMLEYARQSEYETIKRYEKRKEQAANLNMTELVVK 122 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC----CCCCCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCc----cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 45666788888888888888776542 1111111 1123677888888888888888888888777653 2 23333
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006213 607 LSNVSAKEHALLGQCKDLLST 627 (656)
Q Consensus 607 LA~Va~qE~~lLeEC~eLL~~ 627 (656)
|-.++..|...+..-+.+|..
T Consensus 123 l~~~~~eee~h~~~l~~~l~~ 143 (149)
T 2qqy_A 123 LEDMIADETNHMEELDRLLND 143 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 445666777777766666643
No 30
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=27.66 E-value=4.6e+02 Score=26.02 Aligned_cols=44 Identities=11% Similarity=0.223 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006213 578 SAVDVMQAMASSICLLLSKAGEVNSLVSELSNVSAKEHALLGQC 621 (656)
Q Consensus 578 sAvdvMq~i~ssi~~llpKvee~~~LvsELA~Va~qE~~lLeEC 621 (656)
.++..+++=..-|..+-..+.+++.++.+|+.++.+-..+|+.-
T Consensus 190 ~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~I 233 (267)
T 1dn1_B 190 QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRI 233 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34555556566677777777788888888888777666666543
No 31
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=27.35 E-value=3.5e+02 Score=24.94 Aligned_cols=64 Identities=8% Similarity=0.237 Sum_probs=44.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh---H-HHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 006213 566 RADFQNVKDAISSAVDVMQAMASSICLLLSKAGE---V-NSLVSELSNV-SAKEHALLGQCKDLLSTIA 629 (656)
Q Consensus 566 kaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee---~-~~LvsELA~V-a~qE~~lLeEC~eLL~~va 629 (656)
..|++.-.+.|..|.+++.++..++..--+=++. + ++.+.+|.+. +....+.|+||..+|..+.
T Consensus 46 ~~d~~~k~~~i~KA~~Ii~eL~~sLd~egeiA~nL~~LY~y~~~~L~~Ani~~D~~~ldev~~ll~~Lr 114 (145)
T 1vh6_A 46 NDDMERKNENLIKAQNIIQELNFTLNRNIELSASMGAMYDYMYRRLVQANIKNDTGMLAEVEGYVTDFR 114 (145)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 3588899999999999999999988754111111 1 3344455432 3455788999999998765
No 32
>3kxu_A Ferritin; iron storage protein, disorder, iron, metal binding protein; 1.85A {Homo sapiens} PDB: 3hx2_A 3hx5_A 3hx7_A
Probab=27.19 E-value=4.1e+02 Score=25.28 Aligned_cols=97 Identities=13% Similarity=0.177 Sum_probs=67.9
Q ss_pred HhhhhhhhhhHHHHHHHHHhccccccccCCcc-cchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHHHHH--H
Q 006213 535 ALMDRDYSSSLLGAIEALRASTLRLPVVGGAR-ADFQNVKDAISSAVDVMQAMASSICLLLSKAGEV-NSLVSELSN--V 610 (656)
Q Consensus 535 ~~LE~ehsssLs~a~eAL~AatlRLPv~~GAk-aD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~-~~LvsELA~--V 610 (656)
+.=|.+|+.-|-.-+..+....+ |+-..... .|..++.++|..|+++=..+...|..+.--+++- +...+++-+ .
T Consensus 56 s~EE~~HA~kl~~yi~~rgG~~~-l~~i~~p~~~~~~s~~e~le~aL~~Ek~v~~~l~~l~~la~~~~D~~t~~fLe~~f 134 (191)
T 3kxu_A 56 AEEKREGYERLLKMQNQRGGRAL-FQDIKKPAEDEWGKTPDAMKAAMALEKKLNQALLDLHALGSARTDPHLCDFLETHF 134 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCC-CCCCCCCSCSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCcc-cCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 55677888777777766665432 33223333 3566899999999999999999988888877764 555566553 6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 006213 611 SAKEHALLGQCKDLLSTIAAMQ 632 (656)
Q Consensus 611 a~qE~~lLeEC~eLL~~va~Lq 632 (656)
..+|...+.+..++|..+..+-
T Consensus 135 L~EQve~i~~l~~~l~~l~~~g 156 (191)
T 3kxu_A 135 LDEEVKLIKKMGDHLTNLHRLG 156 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 7777777888888887776653
No 33
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=26.99 E-value=1.8e+02 Score=25.20 Aligned_cols=44 Identities=20% Similarity=0.404 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHhhhhh
Q 006213 488 RSLYNAWIASSRLRESVRTKRTELQLLKQNLKLTSILKSQMTFL 531 (656)
Q Consensus 488 ~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL~~IL~~Qm~~L 531 (656)
+-|+.+..-+-+|++.|..+.=++..+|++++...-|-.|..||
T Consensus 39 ~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q~m 82 (83)
T 1uii_A 39 KALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYM 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46888888899999999999999999999988777777777775
No 34
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=26.28 E-value=2.3e+02 Score=26.54 Aligned_cols=62 Identities=11% Similarity=0.117 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------HHHhHHHHHHHHHHhHHHHHHHHhhhhhHHHHhhhhhh
Q 006213 480 SAQRLNAERSLYNAWIASSRLRES---------------VRTKRTELQLLKQNLKLTSILKSQMTFLEESALMDRDY 541 (656)
Q Consensus 480 ~~q~~~AE~~Ly~~W~~is~LR~s---------------Va~KRieLq~lkq~~KL~~IL~~Qm~~LE~W~~LE~eh 541 (656)
..++..||++|..+=..+.+|++. -..--+...-+.-+..|..|-...-..+..|-+||.=.
T Consensus 51 ~~kk~~Aekql~~Ake~~eKlkKKrsSv~gs~~~aHs~~sslD~vD~~Il~Ak~aL~evt~~l~Er~~RW~qIE~Lc 127 (136)
T 3ter_A 51 EKQRQDCFKEMKEAIEMVDRLQKKQGSVLSSLKLATGAASTSDQVDSKIFALKSRMEKIHTLTRETQERWLQIESLC 127 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC------CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHHHHHhhhchheeeeeecCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346778999999888888888654 22334455556666778999999999999999998643
No 35
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=25.45 E-value=9.4e+02 Score=28.86 Aligned_cols=11 Identities=36% Similarity=0.519 Sum_probs=7.1
Q ss_pred hh--HHHHHHHHH
Q 006213 466 LQ--WRFVNARAN 476 (656)
Q Consensus 466 LQ--WRFaNARAe 476 (656)
+| ||---||.+
T Consensus 893 iQs~~R~~laRr~ 905 (1080)
T 2dfs_A 893 LQCCYRRMMAKRE 905 (1080)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 55 887766654
No 36
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A*
Probab=25.41 E-value=3.7e+02 Score=24.06 Aligned_cols=104 Identities=11% Similarity=0.043 Sum_probs=70.6
Q ss_pred HhhhhhhhhhHHHHHHHHHhccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHH
Q 006213 535 ALMDRDYSSSLLGAIEALRASTLRLPVVGGARADFQNVKDAISSAVDVMQAMASSICLLLSKAGEVN--SLVSELSNVSA 612 (656)
Q Consensus 535 ~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~~--~LvsELA~Va~ 612 (656)
+.=|.+|+.-|..-+..|-....--++ +..-...++.+.+..+++.=..+...+..+.--+++.. ....=|-.++.
T Consensus 48 a~eE~~HA~~l~~~i~~lGG~p~~~~~--~~~~~~~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~~D~~t~~~l~~il~ 125 (159)
T 4am5_A 48 SIEEMAHADKFVERILFLEGLPNLQTL--DPLRIGQTVKEVLESDLAAEREARALYQEGAAYAASVGDFPSKNLFEELMG 125 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCSBC--CCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCccccc--cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455888998888888877764322122 11122347888888999888888888888888777652 23334456777
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhhhhhh
Q 006213 613 KEHALLGQCKDLLSTIAAMQVKECSLRTH 641 (656)
Q Consensus 613 qE~~lLeEC~eLL~~va~LqVeE~SLR~~ 641 (656)
.|..-++..+.+|..+..+=++. -|..|
T Consensus 126 eEeeH~~~l~~~L~~i~~~G~~~-yl~~q 153 (159)
T 4am5_A 126 DEEHHIDFLETQLDLVSKLGLEL-YAQHH 153 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHH-HHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhCHHH-HHHHH
Confidence 78888888888888888776543 35444
No 37
>3oyv_A Imelysin; outer membrane protein, extracellular active site, metal BIN protein, structural genomics; HET: MSE; 1.25A {Bacteroides ovatus atcc 8483} PDB: 3n8u_A*
Probab=25.41 E-value=6.1e+02 Score=26.66 Aligned_cols=99 Identities=9% Similarity=0.203 Sum_probs=66.8
Q ss_pred hhHHH-HhhhhhhhhhHHHHHHHHHhccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------hhHH
Q 006213 530 FLEES-ALMDRDYSSSLLGAIEALRASTLRLPVVGGARADFQNVKDAISSAVDVMQAMASSICLLLSKA-------GEVN 601 (656)
Q Consensus 530 ~LE~W-~~LE~ehsssLs~a~eAL~AatlRLPv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKv-------ee~~ 601 (656)
||+.. ..|..+--.++..++.+|.+.- -|+..++. | .+++.|+..+.++-..|+.-+..++-.. .++.
T Consensus 152 ~l~~~d~~L~~~i~~a~~~a~~~i~ai~--~Pf~~~i~-~-~~~r~a~~a~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~ 227 (361)
T 3oyv_A 152 VIAGANSSLDTKIKNAIQKAAKAIQDIP--QPFRNHIP-S-NETVAAMDACAELESILKNDLKSYIANNSNNINTDAVLN 227 (361)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHSC--SCGGGCTT-S-HHHHHHHHHHHHHHHHHHTHHHHHHHCGGGSCCSHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHhcc--hhHHHhcc-C-HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchhHHH
Confidence 44433 4566666777788888888753 68877764 4 5777777777777777776555555332 5567
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhH
Q 006213 602 SLVSELSNV--SAKEHALLGQCKDLLSTIAAMQ 632 (656)
Q Consensus 602 ~LvsELA~V--a~qE~~lLeEC~eLL~~va~Lq 632 (656)
.++..+++. ...=..++++...|-..+.++.
T Consensus 228 ~vl~~~ad~vi~P~Y~~l~~~a~~L~~a~~a~~ 260 (361)
T 3oyv_A 228 PVVTQYVDAVVVPTYKSLKEKNDALYNAVIVLA 260 (361)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888874 5555667777777777777664
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=24.04 E-value=6.7e+02 Score=26.75 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=8.4
Q ss_pred HHHHHHhHHHHHHHHHH
Q 006213 501 RESVRTKRTELQLLKQN 517 (656)
Q Consensus 501 R~sVa~KRieLq~lkq~ 517 (656)
++.+.+++.+++.++.+
T Consensus 455 ~~e~~~~~~~i~~l~~~ 471 (597)
T 3oja_B 455 EAEVNELRAEVQQLTNE 471 (597)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444555555555544
No 39
>2v2p_A Ferritin light chain; metal transport, iron, haemin, apoferritin, iron storage, metal-binding; 1.15A {Equus caballus} PDB: 2v2r_A 2v2m_A 2v2l_A 2v2s_A 2v2o_A 2v2n_A 2za6_A 2v2j_A 2v2i_A 2z5p_A 1dat_A 2g4h_A 1aew_A 3h7g_A 2zg9_X 2zg8_X 3fi6_A 3o7r_A 2w0o_A 1hrs_A* ...
Probab=23.66 E-value=4.3e+02 Score=24.31 Aligned_cols=99 Identities=13% Similarity=0.147 Sum_probs=72.3
Q ss_pred HhhhhhhhhhHHHHHHHHHhccccccccCCc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHHHHH--H
Q 006213 535 ALMDRDYSSSLLGAIEALRASTLRLPVVGGA-RADFQNVKDAISSAVDVMQAMASSICLLLSKAGEV-NSLVSELSN--V 610 (656)
Q Consensus 535 ~~LE~ehsssLs~a~eAL~AatlRLPv~~GA-kaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~-~~LvsELA~--V 610 (656)
+.=|.+|+.-|..-+..+-....-=++ ..- +.+..++.++|..|++.=..+...+..+.-.+++. +....++-+ .
T Consensus 55 s~EE~~HA~~l~~~i~~rgg~~~l~~i-~~p~~~~~~~~~e~le~aL~~Ek~v~~~l~~l~~~a~~~~D~~t~~fLe~~~ 133 (174)
T 2v2p_A 55 AQQKMQGAERLLKMQNQRGGRALFQDL-QKPSQDEWGTTPDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDFLESHF 133 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCCCC-CCCSCSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCccccCCC-CCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455778888888777777665432222 222 44556899999999999999999999999888763 666666554 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHh
Q 006213 611 SAKEHALLGQCKDLLSTIAAMQVK 634 (656)
Q Consensus 611 a~qE~~lLeEC~eLL~~va~LqVe 634 (656)
..+|...+++..++|..+..+-..
T Consensus 134 l~eq~e~~~~l~~~l~~l~~~g~~ 157 (174)
T 2v2p_A 134 LDEEVKLIKKMGDHLTNIQRLVGS 157 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 777777788888888888777644
No 40
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=23.44 E-value=2.1e+02 Score=25.65 Aligned_cols=61 Identities=13% Similarity=0.145 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHhHHHHHHHHHHhHHHHHHHHhhhhhHHHHhhhhh
Q 006213 480 SAQRLNAERSLYNAWIASSRLRES-------------VRTKRTELQLLKQNLKLTSILKSQMTFLEESALMDRD 540 (656)
Q Consensus 480 ~~q~~~AE~~Ly~~W~~is~LR~s-------------Va~KRieLq~lkq~~KL~~IL~~Qm~~LE~W~~LE~e 540 (656)
..++..||++|..+=..+.+|++. ...--++..-+.-+..|..|-...-..++.|-+||.=
T Consensus 20 ~~kk~~aekql~~A~e~~eKl~KKrsS~~gs~~~ahs~slD~vD~~Il~Ak~aL~evt~~l~Er~~RW~qIE~l 93 (101)
T 3teq_A 20 NIKKQNAEKQLMVAKEGAEKIKKKRNTLFGTFHVAHSSSLDDVDHKILTAKQALSEATAALRERLHRWQQIEIL 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHTCGGGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHHHHhhhchheeeehhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667888887777766666543 1112223333444566788888888888888888853
No 41
>3i9w_A Sensor protein TORS; stacked two four-helix bundles, ATP-binding, cell inner membrane, cell membrane, kinase, membrane; 2.70A {Escherichia coli k-12}
Probab=23.39 E-value=6.2e+02 Score=26.03 Aligned_cols=29 Identities=21% Similarity=-0.029 Sum_probs=15.2
Q ss_pred hhhhcchhhHHHHHHHHHHHHHHHHHHHH
Q 006213 459 RLFHNRLLQWRFVNARANAALSAQRLNAE 487 (656)
Q Consensus 459 RLLhNRlLQWRFaNARAeaa~~~q~~~AE 487 (656)
||-...-+|=+|...+..+....+...+|
T Consensus 100 RL~L~~~~~~~~~~l~~aa~~l~eL~~tq 128 (290)
T 3i9w_A 100 RLQLRQQQQQLSQQIVAAADEIARLAQGQ 128 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444456666666655555544444443
No 42
>2vxx_A Starvation induced DNA binding protein; stress response protein, DPS, oxidation, iron binding, ferroxidase centre; HET: PG4; 2.40A {Synechococcus elongatus}
Probab=23.27 E-value=4.5e+02 Score=24.38 Aligned_cols=95 Identities=12% Similarity=0.086 Sum_probs=56.5
Q ss_pred hhHHHHhhhhhhhhhHHHHHHHHHhccccc--------cccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH-
Q 006213 530 FLEESALMDRDYSSSLLGAIEALRASTLRL--------PVVGGARADFQNVKDAISSAVDVMQAMASSICLLLSKAGEV- 600 (656)
Q Consensus 530 ~LE~W~~LE~ehsssLs~a~eAL~AatlRL--------Pv~~GAkaD~~slk~AL~sAvdvMq~i~ssi~~llpKvee~- 600 (656)
+|++...=|.+|..-|..-+..|-....-- .+. ....+..++.+.|...++..+.+...++.+..-+++.
T Consensus 65 ~~~~~~~ee~~had~laErI~~LGg~p~~~~~~~~~~s~i~-e~~~~~~~~~e~l~~~l~~e~~~i~~~~~~i~~a~~~~ 143 (192)
T 2vxx_A 65 FFQDCYEQVQDHVHALGERLNGLGGVPVAGFQQLAALCCFT-PEPEGAFNCRQMLSNDLQAEQAIIGVLRQQATQAESLG 143 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCSSC-CCCSSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHCcCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 456667777788887777777776543221 111 1223345677888888888888888888888777665
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHH
Q 006213 601 NSLVSE-LSNVSAKEHALLGQCKDLL 625 (656)
Q Consensus 601 ~~LvsE-LA~Va~qE~~lLeEC~eLL 625 (656)
+..... |-.++.+|...+..-+.+|
T Consensus 144 D~~T~~lL~~~l~eeEkh~w~L~~~L 169 (192)
T 2vxx_A 144 DRATAYLYDQILLKTEERAYHIGHFL 169 (192)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 332222 3344455554444444433
No 43
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=21.59 E-value=1.7e+03 Score=30.41 Aligned_cols=41 Identities=22% Similarity=0.305 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh--HHHHHHHHhh
Q 006213 488 RSLYNAWIASSRLRESVRTKRTELQLLKQNL--KLTSILKSQM 528 (656)
Q Consensus 488 ~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~--KL~~IL~~Qm 528 (656)
.+|-.+-..+.+|+...+.++.+|+..+++. +|..|...|.
T Consensus 1927 ~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~ 1969 (3245)
T 3vkg_A 1927 KKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQ 1969 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778888888888888888888776664 3666665543
No 44
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=21.30 E-value=6.3e+02 Score=25.43 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=22.6
Q ss_pred hhhhHHHHhhhhhhhhhHHHHHHHHHh
Q 006213 528 MTFLEESALMDRDYSSSLLGAIEALRA 554 (656)
Q Consensus 528 m~~LE~W~~LE~ehsssLs~a~eAL~A 554 (656)
+.||.+=+.||.+|+-.|..+......
T Consensus 49 ~~f~keRa~IE~eYak~L~kLakk~~~ 75 (350)
T 3aco_A 49 MNCLHERARIEKAYAQQLTEWARRWRQ 75 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888899999999999999887654
No 45
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=20.90 E-value=2.1e+02 Score=24.12 Aligned_cols=42 Identities=19% Similarity=0.082 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH
Q 006213 479 LSAQRLNAERSLYNAWIASSRLRESVRTKRTELQLLKQNLKL 520 (656)
Q Consensus 479 ~~~q~~~AE~~Ly~~W~~is~LR~sVa~KRieLq~lkq~~KL 520 (656)
+......-|-+|.+.-..|.+|.+-|++...++.+|+..+++
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~ 53 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRH 53 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555678888999999999999999999999988877653
Done!