BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006214
         (656 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
           From Electron Micrograph
          Length = 340

 Score = 28.9 bits (63), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 424 WRSVAWSA--ACFFPGIVFVILTVLNFVLWGSKSTGALPISLYFVLLSLWFCISV 476
           W    W A  A F   ++FV+L+V + + WG       P+ +  VL+SL F +S+
Sbjct: 47  WTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSEN---PLPVDMVLISLCFGLSI 98


>pdb|2A22|A Chain A, Structure Of Vacuolar Protein Sorting 29 From
           Cryptosporidium Parvum
 pdb|2A22|B Chain B, Structure Of Vacuolar Protein Sorting 29 From
           Cryptosporidium Parvum
          Length = 215

 Score = 28.9 bits (63), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 18/98 (18%)

Query: 70  GVKKSAENLGELLMGDQIDNSPYRFRINKNETLFLCITTPLSENEVKLLKQRTRDLYQVN 129
           G K+   N  ELL  D+I+               LC     S+  V++LK  T+++Y V+
Sbjct: 39  GAKELPSNFRELLATDKIN-------------YVLCTGNVCSQEYVEMLKNITKNVYIVS 85

Query: 130 MILDNLPVMRYAKQNG-----VSIQWTGFPVGYTPGNS 162
             LD+       + NG     V +Q   F +G   GN 
Sbjct: 86  GDLDSAIFNPDPESNGVFPEYVVVQIGEFKIGLMHGNQ 123


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.142    0.445 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,922,187
Number of Sequences: 62578
Number of extensions: 780755
Number of successful extensions: 2308
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2308
Number of HSP's gapped (non-prelim): 6
length of query: 656
length of database: 14,973,337
effective HSP length: 105
effective length of query: 551
effective length of database: 8,402,647
effective search space: 4629858497
effective search space used: 4629858497
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)