Query 006214
Match_columns 656
No_of_seqs 140 out of 675
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 20:02:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006214.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006214hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1278 Endosomal membrane pro 100.0 2E-202 5E-207 1611.0 55.1 608 12-656 14-628 (628)
2 KOG1277 Endosomal membrane pro 100.0 3E-158 7E-163 1240.2 43.0 555 30-656 29-593 (593)
3 PF02990 EMP70: Endomembrane p 100.0 3E-149 6E-154 1256.8 40.4 511 55-614 1-521 (521)
4 PF12670 DUF3792: Protein of u 84.7 4.3 9.4E-05 37.3 7.8 75 359-439 7-81 (116)
5 PF11368 DUF3169: Protein of u 82.6 15 0.00033 38.1 11.7 38 431-475 200-237 (248)
6 PF06570 DUF1129: Protein of u 64.2 42 0.00092 33.8 9.2 46 370-418 90-135 (206)
7 PRK11339 abgT putative aminobe 60.3 26 0.00056 40.4 7.5 86 363-453 265-361 (508)
8 TIGR02973 nitrate_rd_NapE peri 50.3 24 0.00052 26.8 3.5 34 421-454 2-35 (42)
9 PF06570 DUF1129: Protein of u 45.4 1E+02 0.0022 31.1 8.3 81 516-603 81-169 (206)
10 TIGR02972 TMAO_torE trimethyla 43.3 28 0.00062 27.0 3.0 34 421-454 7-40 (47)
11 PF08055 Trp_leader1: Tryptoph 41.8 11 0.00023 23.0 0.4 8 577-584 6-13 (18)
12 PF03806 ABG_transport: AbgT p 40.9 1.1E+02 0.0024 35.2 8.6 62 390-456 294-359 (502)
13 PF06796 NapE: Periplasmic nit 40.4 34 0.00073 27.6 3.1 34 421-454 15-48 (56)
14 COG5393 Predicted membrane pro 40.3 29 0.00064 32.1 3.1 50 365-417 48-108 (131)
15 PF05297 Herpes_LMP1: Herpesvi 35.9 12 0.00026 39.6 0.0 31 411-443 126-156 (381)
16 KOG2290 Rhomboid family protei 33.7 2.8E+02 0.006 31.7 9.8 17 414-430 586-602 (652)
17 TIGR00819 ydaH p-Aminobenzoyl- 33.0 1.5E+02 0.0033 34.3 8.1 50 363-413 267-328 (513)
18 KOG0569 Permease of the major 32.3 1.7E+02 0.0038 33.6 8.5 66 345-411 259-330 (485)
19 TIGR00894 2A0114euk Na(+)-depe 32.0 81 0.0018 35.0 5.8 29 387-415 298-326 (465)
20 KOG3088 Secretory carrier memb 29.8 3.8E+02 0.0083 28.8 9.7 82 570-651 171-268 (313)
21 PF07331 TctB: Tripartite tric 29.2 2.1E+02 0.0046 26.3 7.3 21 422-443 112-132 (141)
22 KOG2568 Predicted membrane pro 29.1 23 0.0005 40.6 0.8 162 350-561 265-437 (518)
23 PF02990 EMP70: Endomembrane p 28.6 9.6E+02 0.021 27.7 13.9 123 516-646 334-481 (521)
24 KOG0253 Synaptic vesicle trans 28.5 1.7E+02 0.0038 33.0 7.2 111 356-485 135-247 (528)
25 MTH00033 CYTB cytochrome b; Pr 28.0 1.2E+02 0.0027 33.7 6.2 98 543-644 26-142 (383)
26 COG2917 Intracellular septatio 27.3 1.7E+02 0.0036 29.1 6.2 52 421-477 113-167 (180)
27 PF13347 MFS_2: MFS/sugar tran 27.2 1.9E+02 0.0042 31.7 7.7 77 337-419 211-289 (428)
28 KOG1278 Endosomal membrane pro 26.2 1.1E+03 0.025 27.7 14.6 113 525-644 408-544 (628)
29 MTH00086 CYTB cytochrome b; Pr 26.1 1.9E+02 0.0042 31.9 7.2 101 543-644 18-134 (355)
30 PLN02250 lipid phosphate phosp 26.0 5.9E+02 0.013 27.7 10.7 28 580-607 158-186 (314)
31 MTH00119 CYTB cytochrome b; Pr 25.6 1.7E+02 0.0037 32.5 6.8 98 543-644 30-146 (380)
32 PF09788 Tmemb_55A: Transmembr 24.6 87 0.0019 32.8 3.9 29 575-603 223-251 (256)
33 PLN00028 nitrate transmembrane 24.2 1E+02 0.0022 34.7 4.9 34 385-418 287-320 (476)
34 MTH00145 CYTB cytochrome b; Pr 23.8 1.8E+02 0.0038 32.4 6.4 97 543-643 30-145 (379)
35 TIGR00895 2A0115 benzoate tran 23.5 99 0.0022 32.5 4.4 25 394-418 289-313 (398)
36 MTH00016 CYTB cytochrome b; Va 22.6 2.1E+02 0.0046 31.8 6.8 96 543-642 30-144 (378)
37 cd00284 Cytochrome_b_N Cytochr 22.5 2.3E+02 0.005 28.6 6.5 99 543-644 21-139 (200)
38 MTH00034 CYTB cytochrome b; Va 22.4 2.1E+02 0.0045 31.9 6.7 97 543-643 29-144 (379)
39 MTH00053 CYTB cytochrome b; Pr 21.3 2.4E+02 0.0053 31.4 6.9 68 575-643 73-145 (381)
40 PF04423 Rad50_zn_hook: Rad50 20.8 65 0.0014 25.3 1.7 23 101-124 22-44 (54)
41 COG4956 Integral membrane prot 20.7 2.7E+02 0.0058 30.3 6.6 90 392-490 45-134 (356)
42 COG3086 RseC Positive regulato 20.4 78 0.0017 30.5 2.4 66 353-427 72-137 (150)
No 1
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-202 Score=1611.00 Aligned_cols=608 Identities=52% Similarity=0.967 Sum_probs=571.1
Q ss_pred HHHHHHhhcccceeecCCCCCcCCCCCCceEEEEeecccCCCCcccccccCCCCCCCCcccccccchhhhhhcCccccCc
Q 006214 12 FLFAVLFGQVCNGFYLPGSYMHTYSNGEAIYTKVNSLTSIETELPFSYYSLPYCKPLRGVKKSAENLGELLMGDQIDNSP 91 (656)
Q Consensus 12 ~~~~~~~~~~~~~fylpg~~p~~Y~~Gd~V~v~vNkl~s~~~~~~y~Yy~lpfC~p~~~~~~~~~~lGeiL~Gdri~~S~ 91 (656)
++++.++.+.+.+||+||.+|.+|++||+++++|||++|.++|+||+||++|||+|+ ++++++|||||+|+|||++|||
T Consensus 14 ~ll~~~~~~~~~~FylpG~aPv~f~~gd~i~l~vnklts~~t~lpY~YY~~~Fc~p~-~i~~~~EnLGeVl~GDRi~nSP 92 (628)
T KOG1278|consen 14 LLLVSLLLSTSSAFYLPGVAPVNFCSGDPIELKVNKLTSSRTQLPYEYYSLPFCRPE-KIKKQSENLGEVLRGDRIENSP 92 (628)
T ss_pred HHHHHHHHhcccceecCCcCCccCCCCCceEEEEEEeeccccccCcccccccccCcc-ccCCcccchhceeccCcccCCC
Confidence 344444445689999999999999999999999999999999999999999999998 6999999999999999999999
Q ss_pred eEEEecccccc-ccccccCCCHHHHHHHHHHHHhccEEEEEEeccceE-EEec-cCCeeeeecCcccceeCC-CCCceee
Q 006214 92 YRFRINKNETL-FLCITTPLSENEVKLLKQRTRDLYQVNMILDNLPVM-RYAK-QNGVSIQWTGFPVGYTPG-NSNDDYI 167 (656)
Q Consensus 92 y~i~f~~~~~c-~lC~~~~~t~~~~~~l~~~I~~~Y~~~~~iDnLPv~-~~~~-~~~~~~y~~GfplG~~~~-~~~~~yL 167 (656)
|+++|++|++| .+|+ +++++++++.++|+|+++|++||++||||++ +... ++++.+|.+|||+|+.+. +.+++|+
T Consensus 93 y~~~m~e~~~C~~lC~-~k~~~~~~~~l~~~I~~~Y~v~wivDnlPva~~~~~~~~~~~~y~~GfplG~~~~~~~~~~y~ 171 (628)
T KOG1278|consen 93 YKFKMLENQPCETLCA-TKLDKEDAKLLKKLIREGYVVNWIVDNLPVATRYERSDDGKVYYGTGFPLGFKGPKDEDKYYL 171 (628)
T ss_pred ceEecccCCcchhhhc-ccCCHHHHHHHHHHHhhccEeeeeecCCceeEEEeecCCCceEeccCccceeccCCCccceeE
Confidence 99999999999 9997 6899999999999999999999999999985 4333 457889999999999864 4556799
Q ss_pred eeeEEEEEEEeccCCCCceeecccCCCccccccccccCCCCcEEEEEEEEeeccCCChhhhhhcccccCccccCCCCCCC
Q 006214 168 INHLKFTVLVHEYKGSGVEIIGTGEEGMGVISEADDKKASGYEIVGFEVVPCSVKYDPEVMTKLHMYDNITSVKCPSELD 247 (656)
Q Consensus 168 ~NH~~f~I~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IVgf~V~P~Sv~~~~~~~~~~~~~~~~~~~~C~~~~~ 247 (656)
+||++|+|+||++++ ++||||||||+|+|++|+....++.+ .+.+|+.+.+
T Consensus 172 ~NHl~~~i~yH~~~~------------------------~~~riVgfeV~P~Si~~~~~~~~~~~-----~~~~c~~~~~ 222 (628)
T KOG1278|consen 172 HNHLDFVIRYHRDDN------------------------DKYRIVGFEVKPVSIKHEHEKGDSKN-----SLPTCSIPEK 222 (628)
T ss_pred eeeEEEEEEEEecCC------------------------CceEEEEEEEEeeeeecccCCCcccc-----cCCcccCCCC
Confidence 999999999998753 35899999999999998654322221 2357876666
Q ss_pred ccccccc-CeeEEEEEEEEEEecCCCCcchhhhhccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc
Q 006214 248 KSQIIRE-RERISFTYEVEFVKSNIRWPSRWDAYLKMEGARVHWFSILNSLMVIFFLAGIVFVIFLRTVRRDLTRYEELD 326 (656)
Q Consensus 248 ~~~~~~~-~~~i~fTYSV~w~~s~~~w~~Rwd~Yl~~~~~~ihw~SIiNS~~ivl~L~~~v~~Il~R~lr~D~~~Yn~~~ 326 (656)
+++++++ +++|.|||||+|+|||++|++|||.|+++++.+||||||+||++||+||+|+|++|++||||||++|||++|
T Consensus 223 ~~~~~e~~~~~i~fTYsV~f~esdi~WasRWD~yL~m~~~qIhWfSIiNSlvIVlfLSgiv~mI~lRtl~rDiarYne~d 302 (628)
T KOG1278|consen 223 PLELDEGEETEIVFTYSVKFEESDIKWASRWDYYLHMEDVQIHWFSIINSLVIVLFLSGIVAMIMLRTLYRDIARYNELD 302 (628)
T ss_pred ccccCCCCceEEEEEEEEEEEeccCcchhhHHHHhcCCCCceEEEehhhhHHHHHHHHHHHHHHHHHHHHHhHhhhcccc
Confidence 6666643 667999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhhhhcccceeEeccccCCCCCccceeeeeccchhhHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhcc
Q 006214 327 KEAQAQMNEELSGWKLVVGDVFREPDHPKLLCVMVGDGVQITGMAIVTIIFAALGFMSPASRGMLLTGMIFLFLFLGIAA 406 (656)
Q Consensus 327 ~~~~~~~~~ee~GWKlvhgDVFR~P~~~~lls~lvG~G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~ly~~~g~~s 406 (656)
.|+|+ +||+|||||||||||||+++|+||++||+|+|+++|++++++||++|++||++||+++|+++++|+++|++|
T Consensus 303 ~~~d~---~Ee~GWKLVhGDVFR~P~~~~lLsv~vGsGvQ~l~M~~vti~fA~lGflSPs~RGsLmT~~~~l~v~~G~~a 379 (628)
T KOG1278|consen 303 LDDDA---QEESGWKLVHGDVFRPPRNSMLLSVLVGSGVQLLGMILVTIFFACLGFLSPSSRGSLMTAMVLLFVFMGFVA 379 (628)
T ss_pred chhhh---hhhcceEEeecccccCCCCCeEEEEEeccChhhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHHHHHhh
Confidence 87766 667999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHhhcCCcchhhHHHHhhhcchhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHhhccccchhhhhc
Q 006214 407 GYVAVRMWRTIKGTSEGWRSVAWSAACFFPGIVFVILTVLNFVLWGSKSTGALPISLYFVLLSLWFCISVPLTLLGGFFG 486 (656)
Q Consensus 407 Gy~S~r~yk~~~g~~~~W~~~~~lt~~~~P~~~~~i~~ilN~~~~~~~Ss~aipf~ti~~l~~lw~~vs~PL~~lG~~~g 486 (656)
||+|+|+||+++| ++||+++++|++++||++|++++++|+++|+++||+|+||+|+++++++||+||+||+++|+++|
T Consensus 380 gY~s~rlyk~~~g--~~wk~~~~lta~l~PGivf~~~f~lN~~lW~~~SSgAvPF~T~~~ll~LwF~isVPLsf~G~y~g 457 (628)
T KOG1278|consen 380 GYVSARLYKTFKG--REWKRNAILTAFLFPGIVFAIFFVLNFFLWGKHSSGAVPFSTMVALLFLWFGISVPLSFVGGYFG 457 (628)
T ss_pred hhhhhhhHhhhcC--CcchhhHHhhhhhcchHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHhhhhHHHhhHHhh
Confidence 9999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcccCCCCCCCCCCC--CCcceeeeccccccchhhHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Q 006214 487 TRAEEITYPVRTNQIPREIPARK--YPSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFLLIVLLLLVVVCAEV 564 (656)
Q Consensus 487 ~k~~~~~~P~r~n~iPR~IP~qp--~~~~~~~l~~GilPF~~i~iEl~~i~~S~W~~~~yy~fgfL~i~~iil~i~~a~v 564 (656)
+|++++|+|+||||||||||+|| +++++.+++||++||++|||||+||++|+|.||+||+|||||++++||+++|||+
T Consensus 458 ~kk~~~e~PvrTNqIpRqIP~q~~y~~~~~~ili~GilPFg~ifIELfFI~~SiW~~qfYY~FGFLFlvfiiLvvtcaei 537 (628)
T KOG1278|consen 458 FKKPAIEHPVRTNQIPRQIPEQPWYLNPIPSILIAGILPFGAIFIELFFILSSIWLNQFYYMFGFLFLVFIILVVTCAEI 537 (628)
T ss_pred ccCCCCCCCcccCCCcccCCCCccccchhhHHHhhcccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 4889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccCCCCceeehhhhccchhHHHHHHHHHHhhhhhcccccccchhhHHHHHHHHHHHHHHHHhchHHHHHHHH
Q 006214 565 SVVLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFY 644 (656)
Q Consensus 565 sI~~~Y~~L~~Edy~WwWrSF~~~gs~~~y~flYsi~y~~~~~~~~~g~~~~~lyfgy~~l~s~~~~l~~GtiGflas~~ 644 (656)
||++||+|||+||||||||||++||++|+|+|+||++|+++|+ +++|++++++|||||++++++++|+||||||+||+|
T Consensus 538 sIvl~Yf~LC~Edy~WwWRsF~~sG~~avY~fiYsi~Y~~~kL-~i~g~~s~~LYfgYsli~~~~~~l~tGtIGF~a~~~ 616 (628)
T KOG1278|consen 538 SIVLTYFQLCAEDYNWWWRSFLTSGSSAVYVFIYSIFYFFTKL-EISGFVSAVLYFGYSLIISLLFFLLTGTIGFLAAFW 616 (628)
T ss_pred HHHHHHHHHHhcccceeeeeeeccCcchhhHHHHHHhhhheee-eecccchhHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 699999999999999999999999999999999999
Q ss_pred HHHHHhhccCCC
Q 006214 645 FVHYLFSSVKID 656 (656)
Q Consensus 645 Fv~~IY~~iK~D 656 (656)
||||||+++|+|
T Consensus 617 Fv~kIYssvKiD 628 (628)
T KOG1278|consen 617 FVRKIYSSVKID 628 (628)
T ss_pred HHHHHhhheecC
Confidence 999999999998
No 2
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-158 Score=1240.17 Aligned_cols=555 Identities=34% Similarity=0.697 Sum_probs=516.1
Q ss_pred CCCcCCCCCCceEEEEeecccC-CCCcccccccCCCCCCC-CcccccccchhhhhhcCccccCceEEEecccccc-cccc
Q 006214 30 SYMHTYSNGEAIYTKVNSLTSI-ETELPFSYYSLPYCKPL-RGVKKSAENLGELLMGDQIDNSPYRFRINKNETL-FLCI 106 (656)
Q Consensus 30 ~~p~~Y~~Gd~V~v~vNkl~s~-~~~~~y~Yy~lpfC~p~-~~~~~~~~~lGeiL~Gdri~~S~y~i~f~~~~~c-~lC~ 106 (656)
...|.|++||+|++||||++|+ |+||+|.||+||||+++ +++++++|+|||+|.|||+..|+|+++|+.|++- ++|.
T Consensus 29 e~dh~Yk~~e~VvLw~NkVGPyhNpqETY~YfsLPfC~g~~~~i~hk~etLGEvL~G~eL~~s~y~ikF~~~v~~~v~C~ 108 (593)
T KOG1277|consen 29 ESDHRYKDGEEVVLWMNKVGPYHNPQETYRYFSLPFCSGSKESISHKHETLGEVLQGDELEFSGYEIKFRDNVEKEVYCE 108 (593)
T ss_pred ccccccccCCeeEEEEeccCCCCChhhhceeeccceecCCCcccchhhhhHHhhhCCceeeecceeeeecccCCceeeeh
Confidence 5679999999999999999999 99999999999999843 2678899999999999999999999999999988 9997
Q ss_pred ccCCCHHHHHHHHHHHHhccEEEEEEeccceEEEeccCCeeeeecCcccceeCCCCCceeeeeeEEEEEEEeccCCCCce
Q 006214 107 TTPLSENEVKLLKQRTRDLYQVNMILDNLPVMRYAKQNGVSIQWTGFPVGYTPGNSNDDYIINHLKFTVLVHEYKGSGVE 186 (656)
Q Consensus 107 ~~~~t~~~~~~l~~~I~~~Y~~~~~iDnLPv~~~~~~~~~~~y~~GfplG~~~~~~~~~yL~NH~~f~I~y~~~~~~~~~ 186 (656)
+++++++++.+++||+|+|++||++||||+|+..++-++.. .+++.|+||+||.+|.|.||++
T Consensus 109 -~~L~~e~v~~f~~AI~~~Yyfqmy~DdlPIwGfvGe~d~~k----------~~~~~ky~L~thk~f~i~yn~d------ 171 (593)
T KOG1277|consen 109 -KKLSEEKVKAFRYAIENDYYFQMYIDDLPIWGFVGEVDEDK----------LDNEGKYYLYTHKKFEIGYNGD------ 171 (593)
T ss_pred -hhcCHHHHHHHHHHHHhhheeeeeecCceeeeEeeeecccc----------CCCCCceEEEEeeeEEEeecCc------
Confidence 89999999999999999999999999999998876422211 2355678999999999999985
Q ss_pred eecccCCCccccccccccCCCCcEEEEEEEEeeccCCChhhhhhcccccCccccCCCCCCCcccccccCeeEEEEEEEEE
Q 006214 187 IIGTGEEGMGVISEADDKKASGYEIVGFEVVPCSVKYDPEVMTKLHMYDNITSVKCPSELDKSQIIRERERISFTYEVEF 266 (656)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~IVgf~V~P~Sv~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~i~fTYSV~w 266 (656)
|||.+++.- |. ...+. ++..+++||||+|
T Consensus 172 -----------------------rii~vnlt~----~~-----------------------~v~L~-~~~~~~~tYsV~W 200 (593)
T KOG1277|consen 172 -----------------------RIIDVNLTT----HG-----------------------LVDLR-PDKKLTFTYSVKW 200 (593)
T ss_pred -----------------------eEEEEEeee----cc-----------------------cccCC-CCCCCceEEEEEe
Confidence 899888763 11 11122 3557999999999
Q ss_pred EecCCCCcchhhhhccCC--ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcHH--HHHhhhhhccccee
Q 006214 267 VKSNIRWPSRWDAYLKME--GARVHWFSILNSLMVIFFLAGIVFVIFLRTVRRDLTRYEELDKE--AQAQMNEELSGWKL 342 (656)
Q Consensus 267 ~~s~~~w~~Rwd~Yl~~~--~~~ihw~SIiNS~~ivl~L~~~v~~Il~R~lr~D~~~Yn~~~~~--~~~~~~~ee~GWKl 342 (656)
.++++++++|.|+|++.. +++||||||+||+++|+||+|+|++||+|+||||.+||++.|++ +.++|.+||.|||+
T Consensus 201 ~~t~v~f~~rfdkyld~~ff~h~IHWfSIfNSfmmVifLvGlvamILMRtLrnDyarY~~dee~~d~~d~d~~~E~GWK~ 280 (593)
T KOG1277|consen 201 KETEVEFEKRFDKYLDPSFFPHRIHWFSIFNSFMMVIFLVGLVAMILMRTLRNDYARYAKDEEALDDMDRDDQEEYGWKQ 280 (593)
T ss_pred eeccCcHHHHhHhhcccccccceeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccccccccccccee
Confidence 999999999999999744 78899999999999999999999999999999999999986542 22334466799999
Q ss_pred EeccccCCCCCccceeeeeccchhhHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhcchhhhHHHHHhhcCCcc
Q 006214 343 VVGDVFREPDHPKLLCVMVGDGVQITGMAIVTIIFAALGFMSPASRGMLLTGMIFLFLFLGIAAGYVAVRMWRTIKGTSE 422 (656)
Q Consensus 343 vhgDVFR~P~~~~lls~lvG~G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~ly~~~g~~sGy~S~r~yk~~~g~~~ 422 (656)
|||||||||+|+.|||+++|+|.|++..+++++++|++|.+.+. ||++++++|++|++++.++||+||.+|..++| +
T Consensus 281 vHgDVFR~p~~~~Lfsa~lGsG~Qlf~l~~~ii~~Alvg~fy~~-rGal~saaI~vYAlTs~i~GY~~gs~Y~r~gG--~ 357 (593)
T KOG1277|consen 281 VHGDVFRFPSHPLLFSAVLGSGAQLFTLVLIIIMLALVGVFYTE-RGALLSAAIVVYALTSPINGYVSGSFYARLGG--R 357 (593)
T ss_pred eecccccCCCccHHHHHHhccccchHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHhcccccccccceeeehhcc--H
Confidence 99999999999999999999999999999999999999999887 99999999999999999999999999999999 9
Q ss_pred hhhHHHHhhhcchhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHhhccccchhhhhcccc-ccCCCCcccCCC
Q 006214 423 GWRSVAWSAACFFPGIVFVILTVLNFVLWGSKSTGALPISLYFVLLSLWFCISVPLTLLGGFFGTRA-EEITYPVRTNQI 501 (656)
Q Consensus 423 ~W~~~~~lt~~~~P~~~~~i~~ilN~~~~~~~Ss~aipf~ti~~l~~lw~~vs~PL~~lG~~~g~k~-~~~~~P~r~n~i 501 (656)
+|.|++++|+.++|+++++.++++|+++|+++|++|+||+|++.++++|++|..||+++|++.|+++ .++++||||+++
T Consensus 358 ~Wik~m~lta~Lfp~~~~~t~~~~N~vai~y~at~AlPfgt~v~v~~iw~fv~~PL~~~G~i~GkN~~~~~~~PCR~~~~ 437 (593)
T KOG1277|consen 358 RWIKNMLLTASLFPVPVFGTAFLLNTVAIAYGATAALPFGTIVVVLLIWLFVISPLTVLGGIAGKNRSGEFDAPCRTKAI 437 (593)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccccCccchHHHHHHHHHHhchHHHcccccccccccCCCCCcccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999986 467899999999
Q ss_pred CCCCCCCC-C-CcceeeeccccccchhhHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCc
Q 006214 502 PREIPARK-Y-PSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFLLIVLLLLVVVCAEVSVVLTYMHLCVEDWR 579 (656)
Q Consensus 502 PR~IP~qp-~-~~~~~~l~~GilPF~~i~iEl~~i~~S~W~~~~yy~fgfL~i~~iil~i~~a~vsI~~~Y~~L~~Edy~ 579 (656)
||+||++| + +|.+.+++||+|||++||||+||||+|.|.+++||+|||++++++||+++++||||++|||||++||||
T Consensus 438 pR~Ip~~kWy~~~~~~~~~gG~LPFgsIfIEmYfIFtSfW~ykiYyvYgfm~lVf~IL~iVtvcvTIv~TYFlLnaEDyr 517 (593)
T KOG1277|consen 438 PREIPPKKWYRSPLVIMLMGGFLPFGSIFIEMYFIFTSFWGYKIYYVYGFMFLVFVILLIVTVCVTIVLTYFLLNAEDYR 517 (593)
T ss_pred CCCCCCccccccchHHHHhhccCccchhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccccce
Confidence 99999999 4 678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeehhhhccchhHHHHHHHHHHhhhhhcccccccchhhHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhccCCC
Q 006214 580 WWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 656 (656)
Q Consensus 580 WwWrSF~~~gs~~~y~flYsi~y~~~~~~~~~g~~~~~lyfgy~~l~s~~~~l~~GtiGflas~~Fv~~IY~~iK~D 656 (656)
||||||+++||+|+|+++||+|||++|+ +|+|+.|+.+|||||+++|.+++++||||||.++..||||||.++|+|
T Consensus 518 W~WtSfls~~ST~~yvy~Ys~yYy~~kt-kMsG~fQTsfyFGYm~~f~~~lgim~Gtigy~gt~~FVR~IY~nvK~d 593 (593)
T KOG1277|consen 518 WWWTSFLSAGSTALYVYLYSFYYYFFKT-KMSGLFQTSFYFGYMAVFCYALGLMCGTIGYVGTLLFVRKIYRNVKID 593 (593)
T ss_pred eeeeeeeccccceeehhhhHHHHHhhhc-cccchhhhhhhhHHHHHHHHHHHHHHhhHhhhHHHHHHHHHHhhccCC
Confidence 9999999999999999999999999999 699999999999999999999999999999999999999999999998
No 3
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=100.00 E-value=2.8e-149 Score=1256.83 Aligned_cols=511 Identities=47% Similarity=0.971 Sum_probs=476.3
Q ss_pred cccccccCCCCCCCCcccccccchhhhhhcCccccCceEEEecccccc-ccccccCCCHHHHHHHHHHHHhccEEEEEEe
Q 006214 55 LPFSYYSLPYCKPLRGVKKSAENLGELLMGDQIDNSPYRFRINKNETL-FLCITTPLSENEVKLLKQRTRDLYQVNMILD 133 (656)
Q Consensus 55 ~~y~Yy~lpfC~p~~~~~~~~~~lGeiL~Gdri~~S~y~i~f~~~~~c-~lC~~~~~t~~~~~~l~~~I~~~Y~~~~~iD 133 (656)
+|||||+||||+|+++.++++|||||+|+|||+++|||+++|++|++| .+|+ ++++++|+++++++|+|+|++||+||
T Consensus 1 l~Y~Yy~lPfC~P~~~~~~~~~slGevL~Gdr~~~S~y~i~f~~~~~c~~lC~-~~l~~~~~~~l~~~I~~~Y~~~~~vD 79 (521)
T PF02990_consen 1 LPYDYYDLPFCRPEEGIEHKSESLGEVLRGDRIQNSPYEIKFLQNVTCKVLCK-KTLTKEDVKKLKEAIENNYRVEMYVD 79 (521)
T ss_pred CCccccCCCCcCCCCccccccCCHHHHhccCceecCceEEEEecCcchhhccC-ccCCHHHHHHHHHHHHHhheeeEEec
Confidence 599999999999984478889999999999999999999999999999 9997 79999999999999999999999999
Q ss_pred ccceEEEeccCC--eeeeecCcccceeCCCCCceeeeeeEEEEEEEeccCCCCceeecccCCCccccccccccCCCCcEE
Q 006214 134 NLPVMRYAKQNG--VSIQWTGFPVGYTPGNSNDDYIINHLKFTVLVHEYKGSGVEIIGTGEEGMGVISEADDKKASGYEI 211 (656)
Q Consensus 134 nLPv~~~~~~~~--~~~y~~GfplG~~~~~~~~~yL~NH~~f~I~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 211 (656)
|||++...++.+ +..|..|+|+|..+++ ++|||||++|+|+||++++ +++||
T Consensus 80 ~LP~~~~~~~~~~~~~~y~~G~~~g~~~~~--~~~l~NH~~f~I~Yn~~~~------------------------~~~~I 133 (521)
T PF02990_consen 80 DLPIAGFIGSVDGCDKGYPIGFPLGFKDDN--KYYLYNHLDFTIRYNQESN------------------------GDYRI 133 (521)
T ss_pred CceEEEEecccCCcceecCCCcccCcccCC--cceeEeEEEEEEEEECCCC------------------------CceEE
Confidence 999987766333 4677889999987544 5599999999999998653 34899
Q ss_pred EEEEEEeeccCCChhhhhhcccccCccccCCCCC-CCcccccccCe--eEEEEEEEEEEecCCCCcchhhhhcc-CCccc
Q 006214 212 VGFEVVPCSVKYDPEVMTKLHMYDNITSVKCPSE-LDKSQIIRERE--RISFTYEVEFVKSNIRWPSRWDAYLK-MEGAR 287 (656)
Q Consensus 212 Vgf~V~P~Sv~~~~~~~~~~~~~~~~~~~~C~~~-~~~~~~~~~~~--~i~fTYSV~w~~s~~~w~~Rwd~Yl~-~~~~~ 287 (656)
|||+|+|+|+++. +|+.+ .++++++++++ +|.|||||+|++++++|++|||+|++ ..+++
T Consensus 134 Vgf~v~p~Si~~~----------------~C~~~~~~~~~l~~~~~~~~i~fTYSV~w~~s~~~w~~Rwd~Yl~~~~~~~ 197 (521)
T PF02990_consen 134 VGFEVTPRSIDHS----------------TCPGNESSPQELPEDKEADNITFTYSVKWEESDVPWASRWDKYLDSMFDSQ 197 (521)
T ss_pred EEEEEEeccccCc----------------cccccCCCCeeccCCCcccEEEEEEEEEEEecCCchhhccccccccccCCc
Confidence 9999999999874 24322 34555553322 69999999999999999999999999 77899
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcHHHHHhhhhhcccceeEeccccCCCCCccceeeeeccchhh
Q 006214 288 VHWFSILNSLMVIFFLAGIVFVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFREPDHPKLLCVMVGDGVQI 367 (656)
Q Consensus 288 ihw~SIiNS~~ivl~L~~~v~~Il~R~lr~D~~~Yn~~~~~~~~~~~~ee~GWKlvhgDVFR~P~~~~lls~lvG~G~Ql 367 (656)
+||+||+||+++|+||+++|++|++|+||||++|||++|++++. +||+|||+|||||||||+|+++||+++|+|+|+
T Consensus 198 ihw~SiiNS~iivl~L~~~v~~Il~R~l~~D~~~y~~~~~~~~~---~ee~GWKlvhgDVFR~P~~~~lls~lvG~G~Ql 274 (521)
T PF02990_consen 198 IHWFSIINSFIIVLFLSGLVAIILLRTLRRDISRYNDEDSEEDD---QEESGWKLVHGDVFRPPKHPMLLSALVGTGIQL 274 (521)
T ss_pred eEEEeHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccc---ccccchhhhhHHHhcCcCCchHHHhHhcchhhh
Confidence 99999999999999999999999999999999999998765533 667999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhcchhhhHHHHHhhcCCcchhhHHHHhhhcchhHHHHHHHHHHH
Q 006214 368 TGMAIVTIIFAALGFMSPASRGMLLTGMIFLFLFLGIAAGYVAVRMWRTIKGTSEGWRSVAWSAACFFPGIVFVILTVLN 447 (656)
Q Consensus 368 l~~~~~~l~~a~~g~lsp~~rg~l~t~~i~ly~~~g~~sGy~S~r~yk~~~g~~~~W~~~~~lt~~~~P~~~~~i~~ilN 447 (656)
++|+++++++|++|+++|++||+++++++++|+++|++|||+|||+||+|+| ++||+++++|++++|++++++++++|
T Consensus 275 l~~~~~~~~~a~~g~~~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~yk~~~g--~~W~~~~~lt~~~~P~~~~~~~~~~n 352 (521)
T PF02990_consen 275 LFMALVTLFFAALGFLSPNNRGSLLTAAIILYALTSFIAGYVSARLYKSFGG--KKWKKNSILTSLLFPGILFSIFFILN 352 (521)
T ss_pred hHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHhhHHHHHHHHHHHHcCC--CceeehhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 89999999999999999999999999
Q ss_pred HHHHhhcCCCCcchHHHHHHHHHHHHhhccccchhhhhccccccC-CCCcccCCCCCCCCCCC-C-Ccceeeeccccccc
Q 006214 448 FVLWGSKSTGALPISLYFVLLSLWFCISVPLTLLGGFFGTRAEEI-TYPVRTNQIPREIPARK-Y-PSWLLVLGAGTLPF 524 (656)
Q Consensus 448 ~~~~~~~Ss~aipf~ti~~l~~lw~~vs~PL~~lG~~~g~k~~~~-~~P~r~n~iPR~IP~qp-~-~~~~~~l~~GilPF 524 (656)
+++|.++||+|+||+|++.++++|++|++||+++|+++|+|+++. ++|||+|+||||||+|| + ++.+.++++|++||
T Consensus 353 ~i~~~~~ss~aipf~t~~~l~~lw~~v~~PL~~lG~~~g~k~~~~~~~p~~~n~ipR~IP~~~~y~~~~~~~l~~G~lPF 432 (521)
T PF02990_consen 353 FIAWSYGSSSAIPFGTILFLIALWFFVSIPLTFLGGYFGFKNPPIDEFPCRTNQIPRQIPPQPWYLSPFFSILIGGILPF 432 (521)
T ss_pred HHHHhhccccccchHHHHHHHHHHHHHhhhhhhcchhhhcCccccccCCcCCCCCCCcCCCCccccCCccceeecchHHH
Confidence 999999999999999999999999999999999999999999888 99999999999999999 4 78899999999999
Q ss_pred hhhHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCceeehhhhccchhHHHHHHHHHHhhh
Q 006214 525 GTLFIELFFILSSIWLGRFYYVFGFLLIVLLLLVVVCAEVSVVLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLV 604 (656)
Q Consensus 525 ~~i~iEl~~i~~S~W~~~~yy~fgfL~i~~iil~i~~a~vsI~~~Y~~L~~Edy~WwWrSF~~~gs~~~y~flYsi~y~~ 604 (656)
++|++||+||++|+|.+++||+||||+++++|++++|||+||++||+|||+||||||||||++|||+|+|+|+||+||++
T Consensus 433 ~~i~iEl~~i~~s~W~~~~y~~fgfl~~~~~ll~i~~a~vsI~~tY~~L~~Edy~WwWrSF~~~~s~~~y~f~Ysi~y~~ 512 (521)
T PF02990_consen 433 GAIFIELYFIFSSLWSNKFYYLFGFLLLVFILLIITCAEVSIILTYFQLCAEDYRWWWRSFLTGGSSGIYVFLYSIYYYF 512 (521)
T ss_pred HHHHHHHHHHHHHhhcCcceEEehHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeehhCcHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccc
Q 006214 605 FDLQSLSGPV 614 (656)
Q Consensus 605 ~~~~~~~g~~ 614 (656)
+|+ +|+|++
T Consensus 513 ~~~-~~~g~~ 521 (521)
T PF02990_consen 513 TKL-SMSGFV 521 (521)
T ss_pred eeE-EeeecC
Confidence 999 699974
No 4
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=84.71 E-value=4.3 Score=37.25 Aligned_cols=75 Identities=19% Similarity=0.263 Sum_probs=54.3
Q ss_pred eeeccchhhHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhcchhhhHHHHHhhcCCcchhhHHHHhhhcchhHH
Q 006214 359 VMVGDGVQITGMAIVTIIFAALGFMSPASRGMLLTGMIFLFLFLGIAAGYVAVRMWRTIKGTSEGWRSVAWSAACFFPGI 438 (656)
Q Consensus 359 ~lvG~G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~ly~~~g~~sGy~S~r~yk~~~g~~~~W~~~~~lt~~~~P~~ 438 (656)
++-|.-.-+..+.+..+++|.+=...+-+.+.+--...+.++++.+++|++++|.-|. |.|.+- ..++.++=.+
T Consensus 7 vl~g~~~~~~~tl~~~l~~a~ll~~~~~~e~~~~~~~~~i~~ls~~~GG~~a~~~~~~-----kG~l~G-~~~Gl~y~~i 80 (116)
T PF12670_consen 7 VLKGLLVAYIITLILLLLLALLLYFTSLSESILPWLVVIIYILSVFIGGFYAGRKAGS-----KGWLHG-LLVGLLYFLI 80 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----chHHHH-HHHHHHHHHH
Confidence 3445566677777888888876666667778888889999999999999999997642 778754 4455444333
Q ss_pred H
Q 006214 439 V 439 (656)
Q Consensus 439 ~ 439 (656)
+
T Consensus 81 l 81 (116)
T PF12670_consen 81 L 81 (116)
T ss_pred H
Confidence 3
No 5
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=82.56 E-value=15 Score=38.06 Aligned_cols=38 Identities=18% Similarity=0.387 Sum_probs=21.2
Q ss_pred hhcchhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHhh
Q 006214 431 AACFFPGIVFVILTVLNFVLWGSKSTGALPISLYFVLLSLWFCIS 475 (656)
Q Consensus 431 t~~~~P~~~~~i~~ilN~~~~~~~Ss~aipf~ti~~l~~lw~~vs 475 (656)
+..++|+...++.++-. .++..+...++.+.++|+-+.
T Consensus 200 n~~ll~~~~~~l~i~s~-------~t~~~q~la~lvl~~I~iyi~ 237 (248)
T PF11368_consen 200 NQYLLPILYILLFIYSL-------LTGENQLLAILVLIIIWIYIN 237 (248)
T ss_pred HHHHHHHHHHHHHHHHH-------HcCCccHHHHHHHHHHHHHHH
Confidence 44566776655543311 234455666677777886443
No 6
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=64.20 E-value=42 Score=33.78 Aligned_cols=46 Identities=24% Similarity=0.533 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhcchhhhHHHHHhhc
Q 006214 370 MAIVTIIFAALGFMSPASRGMLLTGMIFLFLFLGIAAGYVAVRMWRTIK 418 (656)
Q Consensus 370 ~~~~~l~~a~~g~lsp~~rg~l~t~~i~ly~~~g~~sGy~S~r~yk~~~ 418 (656)
..+.+++.+.++++++.++... .+..-++.++++|.+-..++|.+.
T Consensus 90 ~~if~~~~gi~~~f~~~~~~~~---gi~tli~~~i~~G~~~~~~~~~i~ 135 (206)
T PF06570_consen 90 FGIFSLLFGIMGFFSPKNSNQY---GIITLILVSIVGGLVFYFIFKYIY 135 (206)
T ss_pred HHHHHHHHHHHHHHhhcccccc---cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666777887777433322 333334556777777777776654
No 7
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=60.34 E-value=26 Score=40.36 Aligned_cols=86 Identities=13% Similarity=0.216 Sum_probs=42.6
Q ss_pred cchhhHHHHHHHHHHHH--hcccCCCCch-----hHHH----HHHHHHHHhhhcchhhhHHHHHhhcCCcchhhHHHHhh
Q 006214 363 DGVQITGMAIVTIIFAA--LGFMSPASRG-----MLLT----GMIFLFLFLGIAAGYVAVRMWRTIKGTSEGWRSVAWSA 431 (656)
Q Consensus 363 ~G~Qll~~~~~~l~~a~--~g~lsp~~rg-----~l~t----~~i~ly~~~g~~sGy~S~r~yk~~~g~~~~W~~~~~lt 431 (656)
.|+-++..+.+.+++.+ -|.++..+.| -+++ ...++|.+.|++-|+.++++.+. ++..+...-.
T Consensus 265 Ag~~~l~~~~~i~~l~lP~~g~Lr~~~tG~l~~Sp~~~siv~~i~~~Fli~GivyG~~~g~iks~-----~Dv~~~m~~g 339 (508)
T PRK11339 265 AGVVSLLFIAAIALMVIPENGILRDPINHTVMPSPFIKGIVPLIILFFFVVSLAYGIATRTIRRQ-----ADLPHLMIEP 339 (508)
T ss_pred HHHHHHHHHHHHHHHHccCCcccccCCCCCccCChHHHhHHHHHHHHHHHHHHHHhhhcccccCH-----HHHHHHHHHH
Confidence 45555554444433321 4555432224 5677 66677777888888777754321 3333332222
Q ss_pred hcchhHHHHHHHHHHHHHHHhh
Q 006214 432 ACFFPGIVFVILTVLNFVLWGS 453 (656)
Q Consensus 432 ~~~~P~~~~~i~~ilN~~~~~~ 453 (656)
.--.-+.++.++.+.+++.+++
T Consensus 340 ~~~m~~~ivl~F~~Aqfia~F~ 361 (508)
T PRK11339 340 MKEMAGFIVMVFPLAQFVAMFN 361 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 2222223344445556666533
No 8
>TIGR02973 nitrate_rd_NapE periplasmic nitrate reductase, NapE protein. NapE, homologous to TorE (TIGR02972), is a membrane protein of unknown function that is part of the periplasmic nitrate reductase system; it may be part of the enzyme complex. The periplasmic nitrate reductase allows for nitrate respiration in anaerobic conditions.
Probab=50.34 E-value=24 Score=26.78 Aligned_cols=34 Identities=15% Similarity=0.331 Sum_probs=30.1
Q ss_pred cchhhHHHHhhhcchhHHHHHHHHHHHHHHHhhc
Q 006214 421 SEGWRSVAWSAACFFPGIVFVILTVLNFVLWGSK 454 (656)
Q Consensus 421 ~~~W~~~~~lt~~~~P~~~~~i~~ilN~~~~~~~ 454 (656)
+++||...+++..++|.+..+....--++.|..+
T Consensus 2 ~~El~~flfl~~~l~PiLsV~~V~~YGF~vWm~Q 35 (42)
T TIGR02973 2 RMELNTFLFLAAVIWPVLSVITVGGYGFAVWMYQ 35 (42)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999998889888764
No 9
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=45.38 E-value=1e+02 Score=31.09 Aligned_cols=81 Identities=19% Similarity=0.420 Sum_probs=38.1
Q ss_pred eeccccccchhhHHHHHHHHHhhhcc---chhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc----CCCCceeehhhhcc
Q 006214 516 VLGAGTLPFGTLFIELFFILSSIWLG---RFYYVFGFLLIVLLLLVVVCAEVSVVLTYMHLC----VEDWRWWWKAFFAS 588 (656)
Q Consensus 516 ~l~~GilPF~~i~iEl~~i~~S~W~~---~~yy~fgfL~i~~iil~i~~a~vsI~~~Y~~L~----~Edy~WwWrSF~~~ 588 (656)
+.+-+.+=|.+++.=++-++. .+.. +.| |++.+.. +.+.+-+.+...|-.+. .+...+||+.+..+
T Consensus 81 ~~ld~~L~~~~if~~~~gi~~-~f~~~~~~~~---gi~tli~---~~i~~G~~~~~~~~~i~~~~~~~~r~~~~k~~~~~ 153 (206)
T PF06570_consen 81 MALDNSLLFFGIFSLLFGIMG-FFSPKNSNQY---GIITLIL---VSIVGGLVFYFIFKYIYPYKKKKKRPSWWKYILIS 153 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhcccccc---cHHHHHH---HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHH
Confidence 444455555556554444333 3332 223 6654322 22223333333333333 45667899998644
Q ss_pred -chhHHHHHHHHHHhh
Q 006214 589 -GSVALYVFLYSINYL 603 (656)
Q Consensus 589 -gs~~~y~flYsi~y~ 603 (656)
++..+++.++.+..+
T Consensus 154 ~~~~~~w~~~~~~~~~ 169 (206)
T PF06570_consen 154 VLAMVLWIVIFVLTSF 169 (206)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 344455555544444
No 10
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=43.28 E-value=28 Score=27.03 Aligned_cols=34 Identities=15% Similarity=0.398 Sum_probs=30.0
Q ss_pred cchhhHHHHhhhcchhHHHHHHHHHHHHHHHhhc
Q 006214 421 SEGWRSVAWSAACFFPGIVFVILTVLNFVLWGSK 454 (656)
Q Consensus 421 ~~~W~~~~~lt~~~~P~~~~~i~~ilN~~~~~~~ 454 (656)
++.||...+++.+++|.+..+....--++.|..+
T Consensus 7 ~~El~~flfl~v~l~PiLsV~~Vg~YGF~vWm~Q 40 (47)
T TIGR02972 7 SNELKALGFIIVVLFPILSVAGIGGYGFIIWMIQ 40 (47)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999988888888754
No 11
>PF08055 Trp_leader1: Tryptophan leader peptide; InterPro: IPR012638 This family consists of the tryptophan (trp) leader peptides. Tryptophan accumulation is the principal event resulting in down regulation of transcription of the structural genes of the trp operon. The leader peptide of the trp operon forms mutually exclusive secondary structures that would either result in the termination of transcription of the trp operon when tryptophan is in plentiful supply or vice versa [].
Probab=41.79 E-value=11 Score=22.96 Aligned_cols=8 Identities=50% Similarity=1.618 Sum_probs=6.0
Q ss_pred CCceeehh
Q 006214 577 DWRWWWKA 584 (656)
Q Consensus 577 dy~WwWrS 584 (656)
--||||.+
T Consensus 6 ~~nwwwta 13 (18)
T PF08055_consen 6 IQNWWWTA 13 (18)
T ss_pred ccceeeec
Confidence 45899975
No 12
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=40.93 E-value=1.1e+02 Score=35.22 Aligned_cols=62 Identities=18% Similarity=0.236 Sum_probs=30.3
Q ss_pred hHHHHHHH----HHHHhhhcchhhhHHHHHhhcCCcchhhHHHHhhhcchhHHHHHHHHHHHHHHHhhcCC
Q 006214 390 MLLTGMIF----LFLFLGIAAGYVAVRMWRTIKGTSEGWRSVAWSAACFFPGIVFVILTVLNFVLWGSKST 456 (656)
Q Consensus 390 ~l~t~~i~----ly~~~g~~sGy~S~r~yk~~~g~~~~W~~~~~lt~~~~P~~~~~i~~ilN~~~~~~~Ss 456 (656)
.+++..+. .|.+.|++=|+.||+ ++. .++.-+.+--.---....+...++..+++.+++.|.
T Consensus 294 Pf~~gIIpiI~l~F~i~GivYG~~sG~----iks-~~Dv~~~M~~~m~~m~~yiVL~F~aaQFia~F~~Sn 359 (502)
T PF03806_consen 294 PFMKGIIPIIFLFFLIPGIVYGIASGT----IKS-DKDVVKMMSKGMKSMAPYIVLAFFAAQFIAYFNWSN 359 (502)
T ss_pred hHHHhHHHHHHHHHHHHHHHHhhhhce----ecC-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Confidence 35555444 444555555555554 332 134433333222333445555666666776666554
No 13
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=40.43 E-value=34 Score=27.64 Aligned_cols=34 Identities=15% Similarity=0.407 Sum_probs=30.1
Q ss_pred cchhhHHHHhhhcchhHHHHHHHHHHHHHHHhhc
Q 006214 421 SEGWRSVAWSAACFFPGIVFVILTVLNFVLWGSK 454 (656)
Q Consensus 421 ~~~W~~~~~lt~~~~P~~~~~i~~ilN~~~~~~~ 454 (656)
++.||...+++.+++|.+..++...--+++|..+
T Consensus 15 ~~E~~~flfl~~~l~PiL~v~~Vg~YGF~VWm~Q 48 (56)
T PF06796_consen 15 RSELKAFLFLAVVLFPILAVAFVGGYGFIVWMYQ 48 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999888888654
No 14
>COG5393 Predicted membrane protein [Function unknown]
Probab=40.30 E-value=29 Score=32.06 Aligned_cols=50 Identities=26% Similarity=0.416 Sum_probs=34.8
Q ss_pred hhhHHHHHHHHHHHHhccc----------CCCCch-hHHHHHHHHHHHhhhcchhhhHHHHHhh
Q 006214 365 VQITGMAIVTIIFAALGFM----------SPASRG-MLLTGMIFLFLFLGIAAGYVAVRMWRTI 417 (656)
Q Consensus 365 ~Qll~~~~~~l~~a~~g~l----------sp~~rg-~l~t~~i~ly~~~g~~sGy~S~r~yk~~ 417 (656)
.|+++|..++++|+.+|.. -|.+|= +......++|+++.+.+++ +++|..
T Consensus 48 l~lllm~gLtl~fa~~~lmsL~vLvi~~f~~tyRl~a~~a~~~vl~vl~~i~ciW---~lrks~ 108 (131)
T COG5393 48 LQLLLMAGLTLLFAAFGLMSLMVLVIWAFDPTYRLNAMIATTAVLLVLALIGCIW---TLRKSR 108 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 5777777777777766654 367775 7777888888888887776 455543
No 15
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=35.95 E-value=12 Score=39.58 Aligned_cols=31 Identities=16% Similarity=0.399 Sum_probs=0.0
Q ss_pred HHHHHhhcCCcchhhHHHHhhhcchhHHHHHHH
Q 006214 411 VRMWRTIKGTSEGWRSVAWSAACFFPGIVFVIL 443 (656)
Q Consensus 411 ~r~yk~~~g~~~~W~~~~~lt~~~~P~~~~~i~ 443 (656)
..+.+..+. +-|...+++-++++-.++++|.
T Consensus 126 m~lLr~~GA--s~WtiLaFcLAF~LaivlLIIA 156 (381)
T PF05297_consen 126 MWLLRELGA--SFWTILAFCLAFLLAIVLLIIA 156 (381)
T ss_dssp ---------------------------------
T ss_pred HHHHHHhhh--HHHHHHHHHHHHHHHHHHHHHH
Confidence 334444554 5677655555544444433333
No 16
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=33.65 E-value=2.8e+02 Score=31.66 Aligned_cols=17 Identities=0% Similarity=-0.230 Sum_probs=10.3
Q ss_pred HHhhcCCcchhhHHHHh
Q 006214 414 WRTIKGTSEGWRSVAWS 430 (656)
Q Consensus 414 yk~~~g~~~~W~~~~~l 430 (656)
|..||..+..||+..++
T Consensus 586 Yi~Fg~~d~yrKr~~il 602 (652)
T KOG2290|consen 586 YIDFGDFDLYRKRFYIL 602 (652)
T ss_pred cccccchhhhhhHHHHH
Confidence 44576656778875443
No 17
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=32.98 E-value=1.5e+02 Score=34.32 Aligned_cols=50 Identities=16% Similarity=0.298 Sum_probs=31.8
Q ss_pred cchhhHHHHHHHHHHHHh---cccCCCC--c-------hhHHHHHHHHHHHhhhcchhhhHHH
Q 006214 363 DGVQITGMAIVTIIFAAL---GFMSPAS--R-------GMLLTGMIFLFLFLGIAAGYVAVRM 413 (656)
Q Consensus 363 ~G~Qll~~~~~~l~~a~~---g~lsp~~--r-------g~l~t~~i~ly~~~g~~sGy~S~r~ 413 (656)
.|+-++..+.+.+ +.++ |.++... . +++.....++|.+.|++.|.+++++
T Consensus 267 Ag~~~l~fia~l~-ll~~P~~g~LR~~~tG~l~~SPf~~~iipii~~~Fli~givyG~~~g~i 328 (513)
T TIGR00819 267 AGVVFIAFIAAIA-LMIIPADGILRDPENGLVAGSPFIKGIVPFIFLFFALPGIAYGIATRSI 328 (513)
T ss_pred HHHHHHHHHHHHH-HHHHcCCCcccCCCCCCccCChHHHhHHHHHHHHHHHHHHHHHhhcCcc
Confidence 5666665544333 4455 6665321 1 4567777888888999999888753
No 18
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=32.33 E-value=1.7e+02 Score=33.62 Aligned_cols=66 Identities=21% Similarity=0.372 Sum_probs=29.9
Q ss_pred ccccCCCCC--ccceeeeeccchhhHHH----HHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhcchhhhH
Q 006214 345 GDVFREPDH--PKLLCVMVGDGVQITGM----AIVTIIFAALGFMSPASRGMLLTGMIFLFLFLGIAAGYVAV 411 (656)
Q Consensus 345 gDVFR~P~~--~~lls~lvG~G~Qll~~----~~~~l~~a~~g~lsp~~rg~l~t~~i~ly~~~g~~sGy~S~ 411 (656)
-|++|-|.+ +++....+..+.|+-.. .-.+-++--.|+- +..--..-.+.-++..+++++|.+.-=
T Consensus 259 ~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~-~~~a~~an~~~g~v~~~~t~~~~~lid 330 (485)
T KOG0569|consen 259 RQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFT-PEEAQYANLGIGIVNLLSTLVSPFLID 330 (485)
T ss_pred HHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888854 44455445555554322 2223334445643 222222222333444555555554433
No 19
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=32.01 E-value=81 Score=34.97 Aligned_cols=29 Identities=24% Similarity=0.270 Sum_probs=15.4
Q ss_pred CchhHHHHHHHHHHHhhhcchhhhHHHHH
Q 006214 387 SRGMLLTGMIFLFLFLGIAAGYVAVRMWR 415 (656)
Q Consensus 387 ~rg~l~t~~i~ly~~~g~~sGy~S~r~yk 415 (656)
.-|.+.....+.-++++.++|+.+.|+.+
T Consensus 298 ~~g~~~~~~~~~~~i~~~~~g~l~d~~~~ 326 (465)
T TIGR00894 298 ENGLLSSLPYLFAWLCSIFAGYLADFLKS 326 (465)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444334444445566667777666543
No 20
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.76 E-value=3.8e+02 Score=28.77 Aligned_cols=82 Identities=20% Similarity=0.396 Sum_probs=52.3
Q ss_pred hhcc-cCCCCceeeh----hhh--ccchhHHHHHHHHHHhhhhhcc-------cccccchhhHHHHHHHHHHHHHHHHhc
Q 006214 570 YMHL-CVEDWRWWWK----AFF--ASGSVALYVFLYSINYLVFDLQ-------SLSGPVSALLYLGYSLIMAVAIMLATG 635 (656)
Q Consensus 570 Y~~L-~~Edy~WwWr----SF~--~~gs~~~y~flYsi~y~~~~~~-------~~~g~~~~~lyfgy~~l~s~~~~l~~G 635 (656)
|+.| +...|==|-| +|- ++..-++|.|.|-....++-++ ...|+++++-.+..++++++++.+..|
T Consensus 171 ~fllftPcsyVcWyRPlYkAFRsDSSf~F~~FFF~y~~q~~~~v~qAvgf~g~~~~G~i~ai~~~~~~i~v~i~m~i~a~ 250 (313)
T KOG3088|consen 171 WFLLFTPCSYVCWYRPLYKAFRTDSSFNFGAFFFTYFFQIVFCVFQAVGFPGWGLCGWIPAIDVLSGNIAVGILMLIGAG 250 (313)
T ss_pred HHHHhCCceeeEeehHHHHHhccccchhhHHHHHHHHHHHHHHHHHHHccCCcchhhhhhHhhccCcchHHHHHHHHHHH
Confidence 4444 2344555555 443 3455677777776555444331 357888899899888888887766554
Q ss_pred --hHHHHHHHHHHHHHhh
Q 006214 636 --TIGFLTSFYFVHYLFS 651 (656)
Q Consensus 636 --tiGflas~~Fv~~IY~ 651 (656)
|+-...+.|-++++|+
T Consensus 251 ~Ft~~av~~i~~i~kVh~ 268 (313)
T KOG3088|consen 251 LFTLEAVLSIWVLQKVHS 268 (313)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 4556667788888765
No 21
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=29.23 E-value=2.1e+02 Score=26.35 Aligned_cols=21 Identities=10% Similarity=0.547 Sum_probs=12.7
Q ss_pred chhhHHHHhhhcchhHHHHHHH
Q 006214 422 EGWRSVAWSAACFFPGIVFVIL 443 (656)
Q Consensus 422 ~~W~~~~~lt~~~~P~~~~~i~ 443 (656)
++|++.. ..+..+|..+..++
T Consensus 112 r~~~~~~-~~s~~~~~~i~~~F 132 (141)
T PF07331_consen 112 RRWLRLL-LISVVFAAVIYFVF 132 (141)
T ss_pred CcHHHHH-HHHHHHHHHHHHHH
Confidence 6788754 44546666665444
No 22
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=29.13 E-value=23 Score=40.61 Aligned_cols=162 Identities=20% Similarity=0.334 Sum_probs=88.1
Q ss_pred CCCCccceeeeeccchhhHHHHHHHHHHHHhcccCCCCchhHHHHHHH--HHHHhhhcchhhhHHHHHhhcCCc---chh
Q 006214 350 EPDHPKLLCVMVGDGVQITGMAIVTIIFAALGFMSPASRGMLLTGMIF--LFLFLGIAAGYVAVRMWRTIKGTS---EGW 424 (656)
Q Consensus 350 ~P~~~~lls~lvG~G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~--ly~~~g~~sGy~S~r~yk~~~g~~---~~W 424 (656)
.|.-.+.++++++++=+-+.-+++.++---.|+.+|.-+|.++..+.+ +|.+.+.+.|- +|. ++..+ .+|
T Consensus 265 ~~~~~~~~a~i~sa~K~Tlsr~LlLIVSlGYGIVkP~Lg~~l~rv~~ig~~~~i~s~i~~l--~~~---~g~~se~~~~~ 339 (518)
T KOG2568|consen 265 SPKVYTVFASILSAIKKTLSRLLLLIVSLGYGIVKPTLGGTLLRVCQIGVIYFIASEILGL--ARV---IGNISELSSLL 339 (518)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhcCcceEecCcchHHHHHHHHhHHHHHHHHHHHH--HHH---hcCcccccchh
Confidence 788889999999999888877776666666889999887777665432 23333333332 222 23211 122
Q ss_pred hHHHHhhhcchhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHhhccccchhhhhccccccCCCCcccCCCCCC
Q 006214 425 RSVAWSAACFFPGIVFVILTVLNFVLWGSKSTGALPISLYFVLLSLWFCISVPLTLLGGFFGTRAEEITYPVRTNQIPRE 504 (656)
Q Consensus 425 ~~~~~lt~~~~P~~~~~i~~ilN~~~~~~~Ss~aipf~ti~~l~~lw~~vs~PL~~lG~~~g~k~~~~~~P~r~n~iPR~ 504 (656)
+.. . ++|+--....+..|+++|++=|+ |.=++-|+
T Consensus 340 ~lf-----~------------------------~ip~ai~d~~f~~wIF~SL~~Tl----------------k~Lr~rRn 374 (518)
T KOG2568|consen 340 ILF-----A------------------------ALPLAILDAAFIYWIFISLAKTL----------------KKLRLRRN 374 (518)
T ss_pred hHH-----H------------------------HHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHH
Confidence 211 0 12333344556778888886554 22233355
Q ss_pred CCCCC-CCcceeeeccc-cccchhhHHHHHHHH----HhhhccchhHHHHHHHHHHHHHHHHH
Q 006214 505 IPARK-YPSWLLVLGAG-TLPFGTLFIELFFIL----SSIWLGRFYYVFGFLLIVLLLLVVVC 561 (656)
Q Consensus 505 IP~qp-~~~~~~~l~~G-ilPF~~i~iEl~~i~----~S~W~~~~yy~fgfL~i~~iil~i~~ 561 (656)
+-+-. ||.+-.+++.+ +.-|+-|.+|.++.- +..|+...+-..+--++.+++|+++|
T Consensus 375 ~vKl~lYr~F~n~l~~~Vvas~~~i~~~~~~~~~~~~~~~Wk~~Wv~~a~W~~l~~~iLvvI~ 437 (518)
T KOG2568|consen 375 IVKLSLYRKFTNTLAFSVVASFAFILVETIFYSIMSCNKDWKERWVDTAFWPLLFFLILVVIM 437 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhccHHHHHHHHHHHHH
Confidence 43333 55443333333 345555667777654 67787653322111234455555544
No 23
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=28.64 E-value=9.6e+02 Score=27.73 Aligned_cols=123 Identities=15% Similarity=0.321 Sum_probs=73.8
Q ss_pred eeccccccchhhHHHHHHHHHhhhccc--hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC-----------------
Q 006214 516 VLGAGTLPFGTLFIELFFILSSIWLGR--FYYVFGFLLIVLLLLVVVCAEVSVVLTYMHLCVE----------------- 576 (656)
Q Consensus 516 ~l~~GilPF~~i~iEl~~i~~S~W~~~--~yy~fgfL~i~~iil~i~~a~vsI~~~Y~~L~~E----------------- 576 (656)
++.+.++|.... .=...+..-.|.++ .-..|+-++..+++.+.++.-.+++..|+-...+
T Consensus 334 ~lt~~~~P~~~~-~~~~~~n~i~~~~~ss~aipf~t~~~l~~lw~~v~~PL~~lG~~~g~k~~~~~~~p~~~n~ipR~IP 412 (521)
T PF02990_consen 334 ILTSLLFPGILF-SIFFILNFIAWSYGSSSAIPFGTILFLIALWFFVSIPLTFLGGYFGFKNPPIDEFPCRTNQIPRQIP 412 (521)
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHHhhccccccchHHHHHHHHHHHHHhhhhhhcchhhhcCccccccCCcCCCCCCCcCC
Confidence 445667776433 33333333446543 2346788888888888888888888888764322
Q ss_pred CCceeehhh---hccc---hhHHHHHHHHHHhhhhhcccccccchhhHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Q 006214 577 DWRWWWKAF---FASG---SVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFV 646 (656)
Q Consensus 577 dy~WwWrSF---~~~g---s~~~y~flYsi~y~~~~~~~~~g~~~~~lyfgy~~l~s~~~~l~~GtiGflas~~Fv 646 (656)
.-.|.=+.+ +.+| ..++|+.+|-++--+-.- +....||+.++..+++.+.|+.++-+.++.-.
T Consensus 413 ~~~~y~~~~~~~l~~G~lPF~~i~iEl~~i~~s~W~~-------~~y~~fgfl~~~~~ll~i~~a~vsI~~tY~~L 481 (521)
T PF02990_consen 413 PQPWYLSPFFSILIGGILPFGAIFIELYFIFSSLWSN-------KFYYLFGFLLLVFILLIITCAEVSIILTYFQL 481 (521)
T ss_pred CCccccCCccceeecchHHHHHHHHHHHHHHHHhhcC-------cceEEehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 124543343 3455 356677776554332221 23445677777777777888888877777544
No 24
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=28.53 E-value=1.7e+02 Score=32.97 Aligned_cols=111 Identities=22% Similarity=0.225 Sum_probs=67.8
Q ss_pred ceeeeeccchhhHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHH-hhhcch-hhhHHHHHhhcCCcchhhHHHHhhhc
Q 006214 356 LLCVMVGDGVQITGMAIVTIIFAALGFMSPASRGMLLTGMIFLFLF-LGIAAG-YVAVRMWRTIKGTSEGWRSVAWSAAC 433 (656)
Q Consensus 356 lls~lvG~G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~ly~~-~g~~sG-y~S~r~yk~~~g~~~~W~~~~~lt~~ 433 (656)
+.|--+|-|.-+-.+++++.+++.+.-.+|+- . ..++++.+ +..++| -+.+.+|.-+.-...+|+..... +.
T Consensus 135 l~~d~~grr~~f~~T~l~t~v~~~is~~spnf----~-~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~ 208 (528)
T KOG0253|consen 135 LSADTIGRRKGFNLTFLVTGVFGVISGASPNF----A-SLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FF 208 (528)
T ss_pred eehhhhhcchhhhhhHHHHHHHHHhhcCCCCe----e-hhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHH-HH
Confidence 45556677777778888888888776666642 2 23333333 333444 46677887776445788865444 65
Q ss_pred chhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHhhccccchhhhh
Q 006214 434 FFPGIVFVILTVLNFVLWGSKSTGALPISLYFVLLSLWFCISVPLTLLGGFF 485 (656)
Q Consensus 434 ~~P~~~~~i~~ilN~~~~~~~Ss~aipf~ti~~l~~lw~~vs~PL~~lG~~~ 485 (656)
-.|+-++ -|.++|..-+.. ..=-+|++.++||.++--+.
T Consensus 209 waig~v~-----ea~law~vm~~~--------gwr~~l~~~~~pl~~~a~f~ 247 (528)
T KOG0253|consen 209 WAIGQVF-----EALLAWGVMSNF--------GWRYLLFTSSTPLMFAARFL 247 (528)
T ss_pred HHHHHHH-----HHHHHHHHHHhh--------hHHHHHHHHHhHHHHHHHHH
Confidence 6666554 455555544332 34457788889988775443
No 25
>MTH00033 CYTB cytochrome b; Provisional
Probab=28.00 E-value=1.2e+02 Score=33.70 Aligned_cols=98 Identities=17% Similarity=0.361 Sum_probs=58.8
Q ss_pred hhHHHHHHHH-HHHHHHHHHHHHHHHHhhhcc------------c-CCCCceeehhhhccchhHHHHHHH-----HHHhh
Q 006214 543 FYYVFGFLLI-VLLLLVVVCAEVSVVLTYMHL------------C-VEDWRWWWKAFFASGSVALYVFLY-----SINYL 603 (656)
Q Consensus 543 ~yy~fgfL~i-~~iil~i~~a~vsI~~~Y~~L------------~-~Edy~WwWrSF~~~gs~~~y~flY-----si~y~ 603 (656)
..+-+|.|+. ++++.+++.. .+..|++= + .-+++|..|+.-.-|++.+++.+| .+||-
T Consensus 26 ~~w~~Gsll~~~~~~qiiTGi---~La~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gAs~~f~~~ylHi~R~~~~g 102 (383)
T MTH00033 26 YWWNFGSLLCLCLGIQILTGV---LLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYG 102 (383)
T ss_pred hHhhHHHHHHHHHHHHHHHHH---HHHhhhcCCCcchHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4466788764 4444444443 23333332 2 337899999999999998888777 34443
Q ss_pred hhhcccccccchhhHHHHHHHHHHHHHHHHhchHHHHHHHH
Q 006214 604 VFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFY 644 (656)
Q Consensus 604 ~~~~~~~~g~~~~~lyfgy~~l~s~~~~l~~GtiGflas~~ 644 (656)
-.|. +....+..++++.-+...=...-|-.|-.+|.++-.
T Consensus 103 sY~r-~~~W~~Gv~ll~l~m~~aF~GYvLpw~qms~w~~~V 142 (383)
T MTH00033 103 GYSR-VLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATV 142 (383)
T ss_pred cccC-hHHHHHhHHHHHHHHHHHHhhhcccccchhhHHHHH
Confidence 3333 345555666666666555555555566666655543
No 26
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=27.26 E-value=1.7e+02 Score=29.10 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=35.3
Q ss_pred cchhhHHHHhhhcchhHHHHHHHHHHHHHHHhhcCC-CCcchHHH--HHHHHHHHHhhcc
Q 006214 421 SEGWRSVAWSAACFFPGIVFVILTVLNFVLWGSKST-GALPISLY--FVLLSLWFCISVP 477 (656)
Q Consensus 421 ~~~W~~~~~lt~~~~P~~~~~i~~ilN~~~~~~~Ss-~aipf~ti--~~l~~lw~~vs~P 477 (656)
.+-|++..+..+ ..|..+.++|..+|.+-|+ .=+.|+.. +.+-+++.+++.|
T Consensus 113 ~~~W~~Ln~~W~-----~FFlf~ai~N~yV~~~fs~d~WV~FKvfG~~~ltlvf~l~q~~ 167 (180)
T COG2917 113 EEVWRKLNLRWA-----LFFLFCAIANEYVARNFSTDTWVNFKVFGLTPLTLIFTLIQGP 167 (180)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHhCCCCeEEEeehhhhhHHHHHHHHHHHH
Confidence 478998777766 6678889999999999998 44555543 3333344444444
No 27
>PF13347 MFS_2: MFS/sugar transport protein
Probab=27.25 E-value=1.9e+02 Score=31.72 Aligned_cols=77 Identities=13% Similarity=0.131 Sum_probs=42.3
Q ss_pred cccceeEeccccCCCCCccceeeee--ccchhhHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhcchhhhHHHH
Q 006214 337 LSGWKLVVGDVFREPDHPKLLCVMV--GDGVQITGMAIVTIIFAALGFMSPASRGMLLTGMIFLFLFLGIAAGYVAVRMW 414 (656)
Q Consensus 337 e~GWKlvhgDVFR~P~~~~lls~lv--G~G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~ly~~~g~~sGy~S~r~y 414 (656)
..++|..-..+||-|+...++.+.. ..|..+......-.+-..+| .+...+.....+.+.++++....+++-
T Consensus 211 ~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~------~~~~~~~~~~~~~~~~~v~~~~~~~l~ 284 (428)
T PF13347_consen 211 KISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLG------NEGLISIFMLIFFVASIVGSPLWGRLS 284 (428)
T ss_pred ccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhc------CchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666677888777655544322 22222222221111111122 124555666677778888888888888
Q ss_pred HhhcC
Q 006214 415 RTIKG 419 (656)
Q Consensus 415 k~~~g 419 (656)
|.++.
T Consensus 285 ~r~gk 289 (428)
T PF13347_consen 285 KRFGK 289 (428)
T ss_pred HHccc
Confidence 88864
No 28
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.18 E-value=1.1e+03 Score=27.73 Aligned_cols=113 Identities=16% Similarity=0.378 Sum_probs=74.0
Q ss_pred hhhHHHHHHHHHhhhccc--hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC----------------CCcee---eh
Q 006214 525 GTLFIELFFILSSIWLGR--FYYVFGFLLIVLLLLVVVCAEVSVVLTYMHLCVE----------------DWRWW---WK 583 (656)
Q Consensus 525 ~~i~iEl~~i~~S~W~~~--~yy~fgfL~i~~iil~i~~a~vsI~~~Y~~L~~E----------------dy~Ww---Wr 583 (656)
|+++.-.+....=+|.++ -=--|+-++....|...+|.-.+-+.-|+--+.. ..+|+ |.
T Consensus 408 Givf~~~f~lN~~lW~~~SSgAvPF~T~~~ll~LwF~isVPLsf~G~y~g~kk~~~e~PvrTNqIpRqIP~q~~y~~~~~ 487 (628)
T KOG1278|consen 408 GIVFAIFFVLNFFLWGKHSSGAVPFSTMVALLFLWFGISVPLSFVGGYFGFKKPAIEHPVRTNQIPRQIPEQPWYLNPIP 487 (628)
T ss_pred hHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHhhhhHHHhhHHhhccCCCCCCCcccCCCcccCCCCccccchhh
Confidence 556666666666679864 2234666666666677777777777778765433 24776 45
Q ss_pred hhhccch---hHHHHHHHHHHhhhhhcccccccchhhHHHHHHHHHHHHHHHHhchHHHHHHHH
Q 006214 584 AFFASGS---VALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFY 644 (656)
Q Consensus 584 SF~~~gs---~~~y~flYsi~y~~~~~~~~~g~~~~~lyfgy~~l~s~~~~l~~GtiGflas~~ 644 (656)
+-+.+|. -++|+.++.| ++.+ =.+ |.-+.||+.++.-+++-+.|.-|+-+.|+.
T Consensus 488 ~ili~GilPFg~ifIELfFI---~~Si-W~~---qfYY~FGFLFlvfiiLvvtcaeisIvl~Yf 544 (628)
T KOG1278|consen 488 SILIAGILPFGAIFIELFFI---LSSI-WLN---QFYYMFGFLFLVFIILVVTCAEISIVLTYF 544 (628)
T ss_pred HHHhhcccchHHHHHHHHHH---HHHH-Hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566664 4567776543 3443 122 677888998888888888888888887765
No 29
>MTH00086 CYTB cytochrome b; Provisional
Probab=26.06 E-value=1.9e+02 Score=31.90 Aligned_cols=101 Identities=16% Similarity=0.388 Sum_probs=58.4
Q ss_pred hhHHHHHHH-HHHHHHHHHHHHHHHHH----------hhhcccCCCCceeehhhhccchhHHHHHHH-----HHHhhhhh
Q 006214 543 FYYVFGFLL-IVLLLLVVVCAEVSVVL----------TYMHLCVEDWRWWWKAFFASGSVALYVFLY-----SINYLVFD 606 (656)
Q Consensus 543 ~yy~fgfL~-i~~iil~i~~a~vsI~~----------~Y~~L~~Edy~WwWrSF~~~gs~~~y~flY-----si~y~~~~ 606 (656)
..+-+|.++ +++++.+++....+.-- +......-+++|--|+.-.-|++.+++.+| .+||--.|
T Consensus 18 ~~w~~Gsll~~~l~iQiiTGi~L~~~Y~p~~~~Af~Sv~~I~~~v~~GwliR~~H~~gas~~f~~~ylHi~R~~~ygsy~ 97 (355)
T MTH00086 18 YWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYR 97 (355)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHhCcccccHHHHHHHHhHHHHHHHHHHHHHHHHHHHcccC
Confidence 446778765 44445554443222111 111223448999999999999999888877 45554444
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHhchHHHHHHHH
Q 006214 607 LQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFY 644 (656)
Q Consensus 607 ~~~~~g~~~~~lyfgy~~l~s~~~~l~~GtiGflas~~ 644 (656)
. +....+..++++.-+...=...-|-.|-.+|.++-.
T Consensus 98 ~-~~~W~~Gv~l~~l~m~~af~GYvLpw~qms~w~~~V 134 (355)
T MTH00086 98 L-KKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVV 134 (355)
T ss_pred C-chHHHHhHHHHHHHHHHHHhhhhcccCchhHHHHHH
Confidence 3 344555566666555555555555566666655443
No 30
>PLN02250 lipid phosphate phosphatase
Probab=25.98 E-value=5.9e+02 Score=27.67 Aligned_cols=28 Identities=14% Similarity=0.018 Sum_probs=16.4
Q ss_pred eeehhhhccchh-HHHHHHHHHHhhhhhc
Q 006214 580 WWWKAFFASGSV-ALYVFLYSINYLVFDL 607 (656)
Q Consensus 580 WwWrSF~~~gs~-~~y~flYsi~y~~~~~ 607 (656)
.-.+||=+|=++ ++..+.|..+|+..++
T Consensus 158 dg~~SFPSGHSS~afa~~~fLslyL~~kl 186 (314)
T PLN02250 158 EGHKSFPSGHTSWSFAGLGFLSLYLSGKI 186 (314)
T ss_pred ccCCCCCchhHHHHHHHHHHHHHHHHHhh
Confidence 446888665444 4555556556665554
No 31
>MTH00119 CYTB cytochrome b; Provisional
Probab=25.63 E-value=1.7e+02 Score=32.50 Aligned_cols=98 Identities=16% Similarity=0.299 Sum_probs=59.0
Q ss_pred hhHHHHHHH-HHHHHHHHHHHHHHHHHhhhcc-------------cCCCCceeehhhhccchhHHHHHHH-----HHHhh
Q 006214 543 FYYVFGFLL-IVLLLLVVVCAEVSVVLTYMHL-------------CVEDWRWWWKAFFASGSVALYVFLY-----SINYL 603 (656)
Q Consensus 543 ~yy~fgfL~-i~~iil~i~~a~vsI~~~Y~~L-------------~~Edy~WwWrSF~~~gs~~~y~flY-----si~y~ 603 (656)
..|.+|.++ +++++.++|.. .+..|++= +.-+++|.-|+.-.-|++..++.+| .++|-
T Consensus 30 ~~~~~G~ll~~~~~~qiitG~---~L~~~Y~p~~~~a~~Sv~~i~~~v~~G~~iR~~H~~ga~~~~~~~~lH~~r~~~~g 106 (380)
T MTH00119 30 AWWNFGSLLGLCLITQILTGL---FLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYG 106 (380)
T ss_pred hhhHHHHHHHHHHHHHHHHHH---HHHHHhcCCchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 557888776 44444554443 23333332 2347899999999988888888776 33444
Q ss_pred hhhcccccccchhhHHHHHHHHHHHHHHHHhchHHHHHHHH
Q 006214 604 VFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFY 644 (656)
Q Consensus 604 ~~~~~~~~g~~~~~lyfgy~~l~s~~~~l~~GtiGflas~~ 644 (656)
-.|. +....+..++++.-+...=....|-.|-.||.|+-.
T Consensus 107 sy~~-~~~W~~Gv~l~~l~~~~~f~Gy~Lpw~q~s~wa~~v 146 (380)
T MTH00119 107 SYLY-KETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATV 146 (380)
T ss_pred eecc-cchhhhhhHHHHHHHHHHHHhcccchhhhhhHHHHH
Confidence 4443 355566666666665555555555556666655443
No 32
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=24.58 E-value=87 Score=32.81 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=15.8
Q ss_pred CCCCceeehhhhccchhHHHHHHHHHHhh
Q 006214 575 VEDWRWWWKAFFASGSVALYVFLYSINYL 603 (656)
Q Consensus 575 ~Edy~WwWrSF~~~gs~~~y~flYsi~y~ 603 (656)
+++|+=-+-+.....-.++++++.|+||+
T Consensus 223 A~~~~giY~~wv~~~l~a~~~~~rs~yy~ 251 (256)
T PF09788_consen 223 AKTYGGIYVSWVGLFLIALICLIRSIYYC 251 (256)
T ss_pred HhhcCcEeHHHHHHHHHHHHHHHHhheeE
Confidence 34443344444555556666666666665
No 33
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=24.23 E-value=1e+02 Score=34.68 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=20.8
Q ss_pred CCCchhHHHHHHHHHHHhhhcchhhhHHHHHhhc
Q 006214 385 PASRGMLLTGMIFLFLFLGIAAGYVAVRMWRTIK 418 (656)
Q Consensus 385 p~~rg~l~t~~i~ly~~~g~~sGy~S~r~yk~~~ 418 (656)
+...|.+.+..-++=+++.+++|+.+-|+-|.++
T Consensus 287 ~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~ 320 (476)
T PLN00028 287 LETAGAIAASFGLMNLFARPAGGYLSDVAARRFG 320 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcC
Confidence 3444544444445556677888888888766543
No 34
>MTH00145 CYTB cytochrome b; Provisional
Probab=23.82 E-value=1.8e+02 Score=32.45 Aligned_cols=97 Identities=15% Similarity=0.274 Sum_probs=54.7
Q ss_pred hhHHHHHHHHH-HHHHHHHHHHHHHHHhhhc------------cc-CCCCceeehhhhccchhHHHHHHHH-----HHhh
Q 006214 543 FYYVFGFLLIV-LLLLVVVCAEVSVVLTYMH------------LC-VEDWRWWWKAFFASGSVALYVFLYS-----INYL 603 (656)
Q Consensus 543 ~yy~fgfL~i~-~iil~i~~a~vsI~~~Y~~------------L~-~Edy~WwWrSF~~~gs~~~y~flYs-----i~y~ 603 (656)
..|-||.++.. +++.+++... +..|++ ++ .-+++|..|+.-.-|++.+++.+|- +||-
T Consensus 30 ~~w~~G~ll~~~~~~qiitG~~---L~~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~~lH~~r~~~~g 106 (379)
T MTH00145 30 IWWNFGSLLGLCLGIQILTGLF---LSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYG 106 (379)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH---HHHHHcCCCchhHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45778877543 4444444332 222222 23 3378999999999999998888873 3443
Q ss_pred hhhcccccccchhhHHHHHHHHHHHHHHHHhchHHHHHHH
Q 006214 604 VFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSF 643 (656)
Q Consensus 604 ~~~~~~~~g~~~~~lyfgy~~l~s~~~~l~~GtiGflas~ 643 (656)
-.|. +....+..++++.-+...=...-|-.|-.+|.++-
T Consensus 107 sy~~-~~~W~~Gv~l~~l~~~~af~GYvLpw~q~s~w~~~ 145 (379)
T MTH00145 107 SYLM-QHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGAT 145 (379)
T ss_pred cccC-chHHHHhHHHHHHHHHHHHHhhccCccccchHHHH
Confidence 3333 23444455555555555444444555555555544
No 35
>TIGR00895 2A0115 benzoate transport.
Probab=23.55 E-value=99 Score=32.52 Aligned_cols=25 Identities=16% Similarity=0.064 Sum_probs=15.4
Q ss_pred HHHHHHHHhhhcchhhhHHHHHhhc
Q 006214 394 GMIFLFLFLGIAAGYVAVRMWRTIK 418 (656)
Q Consensus 394 ~~i~ly~~~g~~sGy~S~r~yk~~~ 418 (656)
.....+.+++.++..+++++-+.++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (398)
T TIGR00895 289 TGGALFNFGGVIGSIIFGWLADRLG 313 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444455666777777777766554
No 36
>MTH00016 CYTB cytochrome b; Validated
Probab=22.62 E-value=2.1e+02 Score=31.79 Aligned_cols=96 Identities=19% Similarity=0.374 Sum_probs=51.0
Q ss_pred hhHHHHHHH-HHHHHHHHHHHHHHHHHhhhc------------cc-CCCCceeehhhhccchhHHHHHHH-----HHHhh
Q 006214 543 FYYVFGFLL-IVLLLLVVVCAEVSVVLTYMH------------LC-VEDWRWWWKAFFASGSVALYVFLY-----SINYL 603 (656)
Q Consensus 543 ~yy~fgfL~-i~~iil~i~~a~vsI~~~Y~~------------L~-~Edy~WwWrSF~~~gs~~~y~flY-----si~y~ 603 (656)
..|-||.++ +++++.+++.. .+..|++ ++ .-+++|..|+.-.-|++.+++.+| .+||-
T Consensus 30 ~~w~~Gsll~~~~~~qiitG~---~L~~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~ylHi~R~~~~g 106 (378)
T MTH00016 30 IWWNFGSLLGLCLVIQILTGL---FLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYG 106 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHhhhcCCcchhHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456788775 44444444443 2222222 22 237899999999999998888877 33333
Q ss_pred hhhcccccccchhhHHHHHHHHHHHHHHHHhchHHHHHH
Q 006214 604 VFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTS 642 (656)
Q Consensus 604 ~~~~~~~~g~~~~~lyfgy~~l~s~~~~l~~GtiGflas 642 (656)
-.|. +-...+..++++.-++..=...-|-.|-.+|.++
T Consensus 107 sy~~-~~~W~~Gv~l~~l~m~~af~GYvLpw~q~s~w~a 144 (378)
T MTH00016 107 SYFL-METWNIGVILLLLTMATAFLGYVLPWGQMSFWGA 144 (378)
T ss_pred cccc-chHHHhhHHHHHHHHHHHHhhhccchhhhhHHHH
Confidence 3333 2233344444444444433333344444444433
No 37
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=22.53 E-value=2.3e+02 Score=28.64 Aligned_cols=99 Identities=16% Similarity=0.345 Sum_probs=57.1
Q ss_pred hhHHHHHHH-HHHHHHHHHHHHHHHHHhhhcc-------------cCCCCceeehhhhccchhHHHHHHHH-----HHhh
Q 006214 543 FYYVFGFLL-IVLLLLVVVCAEVSVVLTYMHL-------------CVEDWRWWWKAFFASGSVALYVFLYS-----INYL 603 (656)
Q Consensus 543 ~yy~fgfL~-i~~iil~i~~a~vsI~~~Y~~L-------------~~Edy~WwWrSF~~~gs~~~y~flYs-----i~y~ 603 (656)
..|.+|+++ +++++.+++-...+ .|++= ..-+++|..|+.-.-|++.+++++|. ++|-
T Consensus 21 ~~~~~G~ll~~~~~iqiiTGi~La---~~Y~p~~~~A~~Sv~~i~~ev~~G~liR~~H~~gas~~~~~~~lH~~r~~~~g 97 (200)
T cd00284 21 YWWNFGSLLGTCLVIQILTGVFLA---MHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYG 97 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788765 44555554433222 23332 33478999999988888888887763 3332
Q ss_pred hhh-cccccccchhhHHHHHHHHHHHHHHHHhchHHHHHHHH
Q 006214 604 VFD-LQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFY 644 (656)
Q Consensus 604 ~~~-~~~~~g~~~~~lyfgy~~l~s~~~~l~~GtiGflas~~ 644 (656)
..| -++....+..++++.-+...=...-|-.|-.||.+.-.
T Consensus 98 sY~~pre~~W~~G~~l~~l~~~~af~GY~Lpw~q~s~w~~~v 139 (200)
T cd00284 98 SYKKPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATV 139 (200)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHH
Confidence 222 11245555566666655555555555566666655544
No 38
>MTH00034 CYTB cytochrome b; Validated
Probab=22.39 E-value=2.1e+02 Score=31.88 Aligned_cols=97 Identities=19% Similarity=0.348 Sum_probs=55.3
Q ss_pred hhHHHHHHHH-HHHHHHHHHHHHHHHHhhhccc-------------CCCCceeehhhhccchhHHHHHHH-----HHHhh
Q 006214 543 FYYVFGFLLI-VLLLLVVVCAEVSVVLTYMHLC-------------VEDWRWWWKAFFASGSVALYVFLY-----SINYL 603 (656)
Q Consensus 543 ~yy~fgfL~i-~~iil~i~~a~vsI~~~Y~~L~-------------~Edy~WwWrSF~~~gs~~~y~flY-----si~y~ 603 (656)
..|-+|.++. ++++.+++.. .+..|++=+ .-+++|.-|+.-.-|++.+++.+| .++|-
T Consensus 29 ~~~~~G~ll~~~~~~qiiTG~---~L~~~Y~p~~~~A~~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~~lH~~r~~~~g 105 (379)
T MTH00034 29 IWWNFGSLLGLCLIIQIITGI---FLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYG 105 (379)
T ss_pred hHHHHHHHHHHHHHHHHHHHH---HHHHHHcCCccchHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567888764 3444444443 233343322 237899999999999988888776 33443
Q ss_pred hhhcccccccchhhHHHHHHHHHHHHHHHHhchHHHHHHH
Q 006214 604 VFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSF 643 (656)
Q Consensus 604 ~~~~~~~~g~~~~~lyfgy~~l~s~~~~l~~GtiGflas~ 643 (656)
-.|. +....+..++++.-+...-...-|-.|-.||.|.-
T Consensus 106 sy~~-~~~W~~G~~l~~l~~~~af~Gy~Lpw~q~s~w~~~ 144 (379)
T MTH00034 106 SYVN-IETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAAT 144 (379)
T ss_pred ccCC-chHHHHhHHHHHHHHHHHHhhcCcchhhhhhHHHH
Confidence 3333 23444455555555555444455555555655544
No 39
>MTH00053 CYTB cytochrome b; Provisional
Probab=21.26 E-value=2.4e+02 Score=31.40 Aligned_cols=68 Identities=18% Similarity=0.339 Sum_probs=43.9
Q ss_pred CCCCceeehhhhccchhHHHHHHH-----HHHhhhhhcccccccchhhHHHHHHHHHHHHHHHHhchHHHHHHH
Q 006214 575 VEDWRWWWKAFFASGSVALYVFLY-----SINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSF 643 (656)
Q Consensus 575 ~Edy~WwWrSF~~~gs~~~y~flY-----si~y~~~~~~~~~g~~~~~lyfgy~~l~s~~~~l~~GtiGflas~ 643 (656)
.-+|+|.-|+.-.-|++.+++.+| .+||--.|. +....+..++++.-+...=...-|-.|=.+|-++-
T Consensus 73 ~v~~Gw~iR~~H~~gas~~f~~~ylHi~R~~~~gsy~~-~~~W~~Gv~l~~l~m~~af~GYvLpw~qms~w~~t 145 (381)
T MTH00053 73 DVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTK-IIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAAT 145 (381)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC-chHHHhhHHHHHHHHHHHHHHhccchhhhhhHHHH
Confidence 348999999999999999988887 345544443 34555556666655555544455555555554443
No 40
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=20.80 E-value=65 Score=25.27 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=14.3
Q ss_pred ccccccccCCCHHHHHHHHHHHHh
Q 006214 101 TLFLCITTPLSENEVKLLKQRTRD 124 (656)
Q Consensus 101 ~c~lC~~~~~t~~~~~~l~~~I~~ 124 (656)
.|++|. +.++++..+.+.+-+++
T Consensus 22 ~CPlC~-r~l~~e~~~~li~~~~~ 44 (54)
T PF04423_consen 22 CCPLCG-RPLDEEHRQELIKKYKS 44 (54)
T ss_dssp E-TTT---EE-HHHHHHHHHHHHH
T ss_pred cCCCCC-CCCCHHHHHHHHHHHHH
Confidence 469997 79999888776665554
No 41
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=20.70 E-value=2.7e+02 Score=30.31 Aligned_cols=90 Identities=16% Similarity=0.162 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhhhcchhhhHHHHHhhcCCcchhhHHHHhhhcchhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHH
Q 006214 392 LTGMIFLFLFLGIAAGYVAVRMWRTIKGTSEGWRSVAWSAACFFPGIVFVILTVLNFVLWGSKSTGALPISLYFVLLSLW 471 (656)
Q Consensus 392 ~t~~i~ly~~~g~~sGy~S~r~yk~~~g~~~~W~~~~~lt~~~~P~~~~~i~~ilN~~~~~~~Ss~aipf~ti~~l~~lw 471 (656)
+..++++|.++..+++|+- +.+|.+. +|.+-.-.+-.++-.+=+++.+++-.+.-.--+...+||-.-+ +-
T Consensus 45 ligai~~~li~~~~~~~~~-~~~~~le----~~i~k~~~~~ilf~tiGLiiGLlia~l~~~pL~~~~ip~~~~i----i~ 115 (356)
T COG4956 45 LIGAIIFFLISFWFGKYVL-NWLKRLE----EQIRKLPVTTILFGTIGLIIGLLIAVLLSSPLFLLPIPFISTI----IP 115 (356)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHH----HHHHhcCHHHHHHHHHHHHHHHHHHHHHhhHHhhCCccHHHhH----HH
Confidence 4567777777777777654 4566553 4543333333343333333333333333233344455643321 12
Q ss_pred HHhhccccchhhhhccccc
Q 006214 472 FCISVPLTLLGGFFGTRAE 490 (656)
Q Consensus 472 ~~vs~PL~~lG~~~g~k~~ 490 (656)
+++++=|.++|.-+|.|++
T Consensus 116 vi~t~il~y~G~~~~~k~~ 134 (356)
T COG4956 116 VILTIILAYFGFQLADKKR 134 (356)
T ss_pred HHHHHHHHHHhhHHhhhhh
Confidence 2345557788888888754
No 42
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=20.36 E-value=78 Score=30.48 Aligned_cols=66 Identities=20% Similarity=0.328 Sum_probs=46.7
Q ss_pred CccceeeeeccchhhHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhcchhhhHHHHHhhcCCcchhhHH
Q 006214 353 HPKLLCVMVGDGVQITGMAIVTIIFAALGFMSPASRGMLLTGMIFLFLFLGIAAGYVAVRMWRTIKGTSEGWRSV 427 (656)
Q Consensus 353 ~~~lls~lvG~G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~ly~~~g~~sGy~S~r~yk~~~g~~~~W~~~ 427 (656)
..+|.|+++=-=.+++++++.++++..++.. ....++.++.|...||..+|-|...-+++..|+-.
T Consensus 72 kslL~sA~LvYi~PL~~l~v~~~La~~L~~~---------e~~~~~~~~lg~~l~fl~~r~ysRkl~~~~~~QpV 137 (150)
T COG3086 72 KSLLKSALLVYIFPLVGLFLGAILAQYLFFS---------ELIVIFGAFLGLALGFLLARRYSRKLAKRTEWQPV 137 (150)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------hHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCe
Confidence 4467788777777888877777765555432 34556668889999999999997654445677743
Done!