Query 006214
Match_columns 656
No_of_seqs 140 out of 675
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 19:04:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006214.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006214hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 39.6 16 0.00055 30.2 2.5 29 287-315 7-35 (79)
2 3cx5_C Cytochrome B-C1 complex 34.6 77 0.0026 33.8 7.5 67 577-644 73-146 (385)
3 2qjy_A Cytochrome B; cytochrom 32.9 61 0.0021 35.3 6.4 68 576-644 87-161 (445)
4 1pp9_C Cytochrome B; cytochrom 26.4 1.1E+02 0.0038 32.5 7.0 66 577-643 74-144 (379)
5 1vf5_A Cytochrome B6; photosyn 25.5 79 0.0027 31.0 5.2 70 573-642 72-148 (215)
6 2elu_A Zinc finger protein 406 20.3 42 0.0014 23.0 1.4 24 99-125 9-32 (37)
7 4f4l_A ION transport protein; 12.8 2.4E+02 0.0082 24.2 4.9 83 360-450 3-90 (112)
8 3j21_R 50S ribosomal protein L 11.1 1.2E+02 0.0042 26.0 2.3 27 33-61 33-59 (97)
9 1pw4_A Glycerol-3-phosphate tr 10.9 1.6E+02 0.0054 30.1 3.6 26 392-417 290-315 (451)
10 3tlw_A GLR4197 protein, GLIC; 10.4 4.2E+02 0.014 26.6 6.6 46 364-410 202-247 (321)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=39.57 E-value=16 Score=30.23 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=18.8
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006214 287 RVHWFSILNSLMVIFFLAGIVFVIFLRTV 315 (656)
Q Consensus 287 ~ihw~SIiNS~~ivl~L~~~v~~Il~R~l 315 (656)
..+...|+-..+..++|.|++.+++.|.+
T Consensus 7 ~~n~~~Iv~gvi~gilliGllllliwk~~ 35 (79)
T 2knc_B 7 GPDILVVLLSVMGAILLIGLAALLIWKLL 35 (79)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666777777777777654
No 2
>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.32.1.1 f.21.1.2 PDB: 3cxh_C* 1ezv_C* 1kb9_C* 1kyo_C* 1p84_C* 2ibz_C*
Probab=34.63 E-value=77 Score=33.83 Aligned_cols=67 Identities=7% Similarity=0.146 Sum_probs=48.3
Q ss_pred CCceeehhhhccchhHHHHHHH-----HHHhhhhh--cccccccchhhHHHHHHHHHHHHHHHHhchHHHHHHHH
Q 006214 577 DWRWWWKAFFASGSVALYVFLY-----SINYLVFD--LQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFY 644 (656)
Q Consensus 577 dy~WwWrSF~~~gs~~~y~flY-----si~y~~~~--~~~~~g~~~~~lyfgy~~l~s~~~~l~~GtiGflas~~ 644 (656)
||+|-.|+.-.-|++.+++.+| .+||--.| . +.+..+..++++.-|+..=...-|=.|-.+|-++-.
T Consensus 73 ~~GwliR~~H~~gAs~ffi~iylHi~Rglyygsy~~Pr-~~~W~~Gv~l~ll~m~~aF~GYvLPwgQmS~WgatV 146 (385)
T 3cx5_C 73 HNGYILRYLHANGASFFFMVMFMHMAKGLYYGSYRSPR-VTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATV 146 (385)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTC-HHHHHHHHHHHHHHHHHHHHHHHHHCBHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC-cceeeecHHHHHHHHHHHHHhhhccCCcchhHHHHH
Confidence 8999999999999999999888 35554444 3 355666677777777666666666667776666544
No 3
>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A* 1zrt_C* 2yiu_A*
Probab=32.89 E-value=61 Score=35.29 Aligned_cols=68 Identities=16% Similarity=0.296 Sum_probs=47.3
Q ss_pred CCCceeehhhhccchhHHHHHHHH-----HHhhhhh--cccccccchhhHHHHHHHHHHHHHHHHhchHHHHHHHH
Q 006214 576 EDWRWWWKAFFASGSVALYVFLYS-----INYLVFD--LQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFY 644 (656)
Q Consensus 576 Edy~WwWrSF~~~gs~~~y~flYs-----i~y~~~~--~~~~~g~~~~~lyfgy~~l~s~~~~l~~GtiGflas~~ 644 (656)
-||+|-.|+.-.-|++.+++.+|- +||--.| . +.+..+..++++.-|+..=...-|=.|-.+|-++-.
T Consensus 87 V~~GwliR~~H~~gAs~ffi~iylHi~RglyygsY~~Pr-~~~W~~Gv~l~ll~m~taF~GYvLPwgQmSfWgatV 161 (445)
T 2qjy_A 87 VNGGFMLRYLHANGASLFFIAVYLHIFRGLYYGSYKAPR-EVTWIVGMLIYLAMMATAFMGYVLPWGQMSFWGATV 161 (445)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTC-HHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCc-cceeeehHHHHHHHHHHHHHheeccCCccchHHHHH
Confidence 389999999999999999998883 5554334 3 355666667777666666666666666666665544
No 4
>1pp9_C Cytochrome B; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.32.1.1 f.21.1.2 PDB: 1bgy_C* 1be3_C* 1l0n_C* 1ntk_C* 1ntm_C* 1ntz_C* 1nu1_C* 1l0l_C* 1ppj_C* 1sqb_C* 1sqp_C* 1sqq_C* 1sqv_C* 1sqx_C* 2a06_C* 2fyu_C* 2ybb_C* 1qcr_C* 3l70_C* 2bcc_C* ...
Probab=26.44 E-value=1.1e+02 Score=32.51 Aligned_cols=66 Identities=17% Similarity=0.370 Sum_probs=43.1
Q ss_pred CCceeehhhhccchhHHHHHHHH-----HHhhhhhcccccccchhhHHHHHHHHHHHHHHHHhchHHHHHHH
Q 006214 577 DWRWWWKAFFASGSVALYVFLYS-----INYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSF 643 (656)
Q Consensus 577 dy~WwWrSF~~~gs~~~y~flYs-----i~y~~~~~~~~~g~~~~~lyfgy~~l~s~~~~l~~GtiGflas~ 643 (656)
||+|-.|+.-.-|++.+++.+|- +||--.|. .-+..+..++++.-|+..=...-|=.|-.+|-++-
T Consensus 74 ~~GwliR~~H~~gAs~ffi~~ylHi~Rglyygsy~~-~~~W~~Gv~l~ll~m~~aF~GYvLPwgQmS~Wgat 144 (379)
T 1pp9_C 74 NYGWIIRYMHANGASMFFICLYMHVGRGLYYGSYTF-LETWNIGVILLLTVMATAFMGYVLPWGQMSFWGAT 144 (379)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGS-HHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheecC-cceehhhHHHHHHHHHHHheeeeccCcchhHHHHH
Confidence 89999999999999999998883 55544443 23455555666655555555555555555555443
No 5
>1vf5_A Cytochrome B6; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.21.1.2 PDB: 2d2c_A* 2e74_A* 2e75_A* 2e76_A* 2zt9_A* 1q90_B*
Probab=25.50 E-value=79 Score=30.99 Aligned_cols=70 Identities=10% Similarity=0.114 Sum_probs=40.4
Q ss_pred ccCC-CCceeehhhhccchhHHHHHHHH-----HHhhhhhc-ccccccchhhHHHHHHHHHHHHHHHHhchHHHHHH
Q 006214 573 LCVE-DWRWWWKAFFASGSVALYVFLYS-----INYLVFDL-QSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTS 642 (656)
Q Consensus 573 L~~E-dy~WwWrSF~~~gs~~~y~flYs-----i~y~~~~~-~~~~g~~~~~lyfgy~~l~s~~~~l~~GtiGflas 642 (656)
+|.| ||+|--|+.-.-|++.+++.+|- +||--.|. ++.+..+..++++.-|...-...-|=.|-.+|-++
T Consensus 72 I~~dv~~GwliR~~H~~gAs~ffi~~ylHi~Rglyygsy~~p~~~~W~~Gv~l~~l~m~~aF~GYvLPwgqmS~wga 148 (215)
T 1vf5_A 72 IMNEVSFGWLIRSIHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWISGVILAVITVSFGVTGYSLPWDQVGYWAV 148 (215)
T ss_dssp HHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSCSHHHHHHHHHHHHHHHHHHHHTTTTCBHHHHHHH
T ss_pred HHhhcccchhhccchHHHHHHHHHHHHHHHHHHHHhhhcccCCCceeHhHHHHHHHHHHHHHcccccCCCccchhhH
Confidence 3433 89999999999999999998883 44533332 12344445555554444433333333344444433
No 6
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=20.27 E-value=42 Score=23.02 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=17.7
Q ss_pred ccccccccccCCCHHHHHHHHHHHHhc
Q 006214 99 NETLFLCITTPLSENEVKLLKQRTRDL 125 (656)
Q Consensus 99 ~~~c~lC~~~~~t~~~~~~l~~~I~~~ 125 (656)
.+-|..|+ ++++ |++.+.+.|++.
T Consensus 9 kqhcrfck-kkys--dvknlikhire~ 32 (37)
T 2elu_A 9 KQHCRFCK-KKYS--DVKNLIKHIRDA 32 (37)
T ss_dssp CCEETTTT-EECS--SHHHHHHHHHHT
T ss_pred HHHHHHHH-HHHH--HHHHHHHHHHHh
Confidence 45688997 6886 577788888764
No 7
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=12.77 E-value=2.4e+02 Score=24.18 Aligned_cols=83 Identities=22% Similarity=0.253 Sum_probs=42.9
Q ss_pred eeccchhhHHHHHHHHHHHHhccc-----CCCCchhHHHHHHHHHHHhhhcchhhhHHHHHhhcCCcchhhHHHHhhhcc
Q 006214 360 MVGDGVQITGMAIVTIIFAALGFM-----SPASRGMLLTGMIFLFLFLGIAAGYVAVRMWRTIKGTSEGWRSVAWSAACF 434 (656)
Q Consensus 360 lvG~G~Qll~~~~~~l~~a~~g~l-----sp~~rg~l~t~~i~ly~~~g~~sGy~S~r~yk~~~g~~~~W~~~~~lt~~~ 434 (656)
+.|.|-=.+++.++..++|++|+. .|.+-+++..+++.+|.++. ..|+... +++..... ..|.. ...
T Consensus 3 ~~g~~nv~~ll~l~~~ifAi~G~~lFg~~~~~~F~~~~~s~ltLF~i~T-~e~W~~~-~~~~~~~~-~~~a~-----iyF 74 (112)
T 4f4l_A 3 HMGVGSVAALLTVVFYIAAVMATNLYGATFPEWFGDLSKSLYTLFQVMT-LESWSMG-IVRPVMNV-HPNAW-----VFF 74 (112)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHT-TTTCCCC-CHHHHTTT-STTTH-----HHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHCCCccccccCHHHHHHHHHHHHH-ccccHHH-HHHHHHhc-CcHHH-----HHH
Confidence 456666667777777778877743 34445778888888887654 2333211 22222221 22321 123
Q ss_pred hhHHHHHHHHHHHHHH
Q 006214 435 FPGIVFVILTVLNFVL 450 (656)
Q Consensus 435 ~P~~~~~i~~ilN~~~ 450 (656)
+..++++.++++|+++
T Consensus 75 i~fi~i~~fi~lNLfi 90 (112)
T 4f4l_A 75 IPFIMLTTFTVLNLFI 90 (112)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455566667777665
No 8
>3j21_R 50S ribosomal protein L21E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=11.11 E-value=1.2e+02 Score=25.95 Aligned_cols=27 Identities=11% Similarity=0.316 Sum_probs=21.1
Q ss_pred cCCCCCCceEEEEeecccCCCCccccccc
Q 006214 33 HTYSNGEAIYTKVNSLTSIETELPFSYYS 61 (656)
Q Consensus 33 ~~Y~~Gd~V~v~vNkl~s~~~~~~y~Yy~ 61 (656)
..|++||.|++.+|- +...-.|+.+|+
T Consensus 33 ~~yk~Gd~VdIk~~g--svqKGmPhk~yH 59 (97)
T 3j21_R 33 QEFEVGQRVHIVIEP--SYHKGMPDPRFH 59 (97)
T ss_dssp CCCCTTCEEEECCCT--TCCSSCCCGGGT
T ss_pred HHhcCCCEEEEEecC--ceEcCCCCcccC
Confidence 689999999998763 445567888874
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=10.91 E-value=1.6e+02 Score=30.09 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhhhcchhhhHHHHHhh
Q 006214 392 LTGMIFLFLFLGIAAGYVAVRMWRTI 417 (656)
Q Consensus 392 ~t~~i~ly~~~g~~sGy~S~r~yk~~ 417 (656)
.......+.+++++++..++++.+.+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~g~l~~~~ 315 (451)
T 1pw4_A 290 SSWAYFLYEYAGIPGTLLCGWMSDKV 315 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555667777777888877765
No 10
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=10.38 E-value=4.2e+02 Score=26.65 Aligned_cols=46 Identities=11% Similarity=-0.076 Sum_probs=31.5
Q ss_pred chhhHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhcchhhh
Q 006214 364 GVQITGMAIVTIIFAALGFMSPASRGMLLTGMIFLFLFLGIAAGYVA 410 (656)
Q Consensus 364 G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~ly~~~g~~sGy~S 410 (656)
-+|+.+=.+++++++.+++. |...|+-++..+........+...++
T Consensus 202 ~~~~~iP~~li~~ls~~sF~-p~~~~~Rv~l~it~lL~~t~~~~~~~ 247 (321)
T 3tlw_A 202 IPNIILPMLFILFISWTAFW-STSYEANVTLVVSTLIAHIAFNILVE 247 (321)
T ss_dssp HHHTHHHHHHHHHHHGGGGG-CCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ehhHHHHHHHHHHHhheeec-cCCCCCcEEEEhhHHHHHHHHHHHHH
Confidence 36777778888889999999 88777666666555544444444333
Done!