Query 006214
Match_columns 656
No_of_seqs 140 out of 675
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 19:04:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006214.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006214hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ppjc2 f.21.1.2 (C:15-260) Mi 30.8 41 0.003 31.2 6.8 99 543-644 15-131 (246)
2 d1vqoq1 b.34.5.1 (Q:1-95) Ribo 19.0 25 0.0018 28.2 2.1 27 33-61 31-57 (95)
3 d3cx5c2 f.21.1.2 (C:1-261) Mit 18.3 1.6E+02 0.012 27.1 8.4 103 543-647 28-149 (261)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 12.0 3.7E+02 0.027 24.3 9.5 24 395-418 290-313 (447)
5 d1q90b_ f.21.1.2 (B:) Cytochro 10.0 2.6E+02 0.019 24.9 6.8 101 543-645 29-148 (212)
6 d2iuba2 f.17.3.1 (A:286-349) M 8.3 67 0.0049 23.0 1.6 25 464-488 5-29 (64)
7 d1pv7a_ f.38.1.2 (A:) Lactose 8.1 76 0.0056 28.6 2.3 27 392-418 261-287 (417)
8 d1wt8a1 g.3.7.2 (A:1-31) Bmkx 8.0 81 0.0059 19.1 1.5 17 90-106 1-17 (31)
9 d1r7ma2 d.95.2.1 (A:121-225) D 7.8 1E+02 0.0074 24.3 2.7 28 103-131 41-68 (105)
10 d1ijwc_ a.4.1.2 (C:) HIN recom 6.1 1.6E+02 0.012 19.8 2.6 19 108-126 4-22 (47)
No 1
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=30.79 E-value=41 Score=31.20 Aligned_cols=99 Identities=17% Similarity=0.328 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC-------------CCceeehhhhccchhHHHHHHH-----HHHhhh
Q 006214 543 FYYVFGFLLIVLLLLVVVCAEVSVVLTYMHLCVE-------------DWRWWWKAFFASGSVALYVFLY-----SINYLV 604 (656)
Q Consensus 543 ~yy~fgfL~i~~iil~i~~a~vsI~~~Y~~L~~E-------------dy~WwWrSF~~~gs~~~y~flY-----si~y~~ 604 (656)
.+|-+|.++...+++-++|. -.+..|+.-+.+ +++|-.|+.-.-|++..++.+| .+||-.
T Consensus 15 ~~w~~G~ll~~~~~iqiiTG--i~L~~~Y~p~~~~A~~Sv~~i~~~v~~G~~iR~~H~~gas~~~~~~~lHm~r~~~~~s 92 (246)
T d1ppjc2 15 SWWNFGSLLGICLILQILTG--LFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLYYGS 92 (246)
T ss_dssp GGGSHHHHHHHHHHHHHHHH--HHHHTTCCCCTTTHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHcCChHHHHHHHHHhcCcccCchhhcchhHhHHHHHHHHHHHHHHHHHHhcC
Confidence 45667887666554444432 233444444332 7899999998888888888777 344433
Q ss_pred hhcccccccchhhHHHHHHHHHHHHHHHHhchHHHHHHHH
Q 006214 605 FDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFY 644 (656)
Q Consensus 605 ~~~~~~~g~~~~~lyfgy~~l~s~~~~l~~GtiGflas~~ 644 (656)
.|. .-.-.+..++|+.-++..=...-|=.|-.+|-|+-.
T Consensus 93 y~~-~~~w~~G~~l~~l~m~~af~GY~Lpw~qms~wa~~V 131 (246)
T d1ppjc2 93 YTF-LETWNIGVILLLTVMATAFMGYVLPWGQMSFWGATV 131 (246)
T ss_dssp GGS-HHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHH
T ss_pred ccc-hHHHHHHHHHHHHHHHHHHeeccCCCcchhHHHHHH
Confidence 343 112333445555544444444455555555555443
No 2
>d1vqoq1 b.34.5.1 (Q:1-95) Ribosomal proteins L21e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=19.02 E-value=25 Score=28.16 Aligned_cols=27 Identities=15% Similarity=0.359 Sum_probs=21.7
Q ss_pred cCCCCCCceEEEEeecccCCCCccccccc
Q 006214 33 HTYSNGEAIYTKVNSLTSIETELPFSYYS 61 (656)
Q Consensus 33 ~~Y~~Gd~V~v~vNkl~s~~~~~~y~Yy~ 61 (656)
++|++||.|.+.+|- |...-+|+.+|+
T Consensus 31 ~~y~~GD~V~I~idp--sv~kGmPh~~yh 57 (95)
T d1vqoq1 31 EEFDDGEKVHLKIDP--SVPNGRFHPRFD 57 (95)
T ss_dssp CCCCTTCEEEECCCT--TCCSSCCCGGGT
T ss_pred eeccCCCEEEEEecC--CeecCccceeec
Confidence 689999999998875 445678888874
No 3
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.30 E-value=1.6e+02 Score=27.12 Aligned_cols=103 Identities=11% Similarity=0.206 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC-------------CCceeehhhhccchhHHHHHHHH-----HHhhh
Q 006214 543 FYYVFGFLLIVLLLLVVVCAEVSVVLTYMHLCVE-------------DWRWWWKAFFASGSVALYVFLYS-----INYLV 604 (656)
Q Consensus 543 ~yy~fgfL~i~~iil~i~~a~vsI~~~Y~~L~~E-------------dy~WwWrSF~~~gs~~~y~flYs-----i~y~~ 604 (656)
..|-+|.++...+++-+++. -.+..|++-..+ +++|-.|+.-.-|++.+++.+|- +||--
T Consensus 28 ~~w~~G~ll~~~~~iqiiTG--i~L~~~Y~p~~~~A~~Sv~~i~~~v~~Gw~iR~~H~~ga~~~~~~~~lH~~r~~~~gs 105 (261)
T d3cx5c2 28 YWWNMGSLLGLCLVIQIVTG--IFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLYYGS 105 (261)
T ss_dssp GGGGHHHHHHHHHHHHHHHH--HHHHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHheecCChHHHHHHHHHHHhhhccChhhhhcccccHHHHHHHHHHHHHHHHHhcc
Confidence 44567887766554433332 233344444332 68999999999999888888773 33322
Q ss_pred hhc-ccccccchhhHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Q 006214 605 FDL-QSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVH 647 (656)
Q Consensus 605 ~~~-~~~~g~~~~~lyfgy~~l~s~~~~l~~GtiGflas~~Fv~ 647 (656)
.|. +++.-.+..++++.-++..=....|-.|-.+|-+.-....
T Consensus 106 y~~pre~~W~~Gv~l~~l~~~~af~GY~Lpw~q~s~w~~~Vit~ 149 (261)
T d3cx5c2 106 YRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITN 149 (261)
T ss_dssp TSTTCHHHHHHHHHHHHHHHHHHHHHHHHHCBHHHHHHHHHHHH
T ss_pred ccCccchhHHhhHHHHHHHHHHHHhhhhcCCCcchhhHHHHHHH
Confidence 222 1234556677777777777777777788888777765444
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=12.04 E-value=3.7e+02 Score=24.28 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=13.2
Q ss_pred HHHHHHHhhhcchhhhHHHHHhhc
Q 006214 395 MIFLFLFLGIAAGYVAVRMWRTIK 418 (656)
Q Consensus 395 ~i~ly~~~g~~sGy~S~r~yk~~~ 418 (656)
...++.+.+.++...++++-+.++
T Consensus 290 ~~~~~~~~~~~~~~~~g~~~~~~~ 313 (447)
T d1pw4a_ 290 AYFLYEYAGIPGTLLCGWMSDKVF 313 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hhhcchhhhhhhhhhhhhhhhhcc
Confidence 344445555666666666655544
No 5
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=9.99 E-value=2.6e+02 Score=24.88 Aligned_cols=101 Identities=11% Similarity=0.197 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC-------------CCceeehhhhccchhHHHHHHHH----HHh-hh
Q 006214 543 FYYVFGFLLIVLLLLVVVCAEVSVVLTYMHLCVE-------------DWRWWWKAFFASGSVALYVFLYS----INY-LV 604 (656)
Q Consensus 543 ~yy~fgfL~i~~iil~i~~a~vsI~~~Y~~L~~E-------------dy~WwWrSF~~~gs~~~y~flYs----i~y-~~ 604 (656)
..|.+|.++...+++-+++. -.+..|++-..+ +++|--|+.-.-|++..++.+|- .+| -.
T Consensus 29 ~~~~~Gsll~~~~~iqi~TG--i~L~~~Y~p~~~~A~~Sv~~I~~~v~~G~liR~lH~~gAs~~~~~~~lHm~r~~~~gs 106 (212)
T d1q90b_ 29 IFYCIGGITFTCFLVQVATG--FAMTFYYRPTVAEAFASVQYIMTDVNFGWLIRSIHRWSASMMVLMMVLHVFRVYLTGG 106 (212)
T ss_dssp SGGGHHHHHHHHHHHHHHHH--HHHTTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhHHHHHHHHHhhhCCCchhhcccccccchHHHHHHHHHHHHHHHcCc
Confidence 45678887766555544442 133344444322 78999999998888888877763 222 11
Q ss_pred hhc-ccccccchhhHHHHHHHHHHHHHHHHhchHHHHHHHHH
Q 006214 605 FDL-QSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYF 645 (656)
Q Consensus 605 ~~~-~~~~g~~~~~lyfgy~~l~s~~~~l~~GtiGflas~~F 645 (656)
.|. ++..-.+..++++.-+...=...-|-.|-.+|-|+-..
T Consensus 107 yk~pre~~W~~Gv~l~~l~m~~aftGY~Lpw~q~sywa~~V~ 148 (212)
T d1q90b_ 107 FKRPRELTWVTGVIMAVCTVSFGVTGYSLPWDQVGYWAVKIV 148 (212)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHH
T ss_pred ccCcccceehHhHHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 121 11334445555555555555555566666666665543
No 6
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=8.25 E-value=67 Score=23.03 Aligned_cols=25 Identities=28% Similarity=0.607 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhccccchhhhhccc
Q 006214 464 YFVLLSLWFCISVPLTLLGGFFGTR 488 (656)
Q Consensus 464 i~~l~~lw~~vs~PL~~lG~~~g~k 488 (656)
.+..+.++-.+-+|++++.|++|-+
T Consensus 5 ~mk~lT~it~iflP~t~i~gifGMN 29 (64)
T d2iuba2 5 VMKVLTIIATIFMPLTFIAGIYGMN 29 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccC
Confidence 3456677778889999999999965
No 7
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=8.09 E-value=76 Score=28.65 Aligned_cols=27 Identities=11% Similarity=0.005 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhhhcchhhhHHHHHhhc
Q 006214 392 LTGMIFLFLFLGIAAGYVAVRMWRTIK 418 (656)
Q Consensus 392 ~t~~i~ly~~~g~~sGy~S~r~yk~~~ 418 (656)
.........+.+.+++..++++-+..+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~l~~r~~ 287 (417)
T d1pv7a_ 261 FGYVTTMGELLNASIMFFAPLIINRIG 287 (417)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHC
T ss_pred hcccccccccccccchhhhhhhhcccc
Confidence 334444556667777777787776544
No 8
>d1wt8a1 g.3.7.2 (A:1-31) Bmkx {Chinese scorpion (Buthus martensi karsch) [TaxId: 34649]}
Probab=8.02 E-value=81 Score=19.13 Aligned_cols=17 Identities=18% Similarity=0.534 Sum_probs=13.9
Q ss_pred CceEEEecccccccccc
Q 006214 90 SPYRFRINKNETLFLCI 106 (656)
Q Consensus 90 S~y~i~f~~~~~c~lC~ 106 (656)
+||.++-+.|..|+.|.
T Consensus 1 tpypvncktdrdcvmcg 17 (31)
T d1wt8a1 1 TPYPVNCKTDRDCVMCG 17 (31)
T ss_dssp CCCCCEESSGGGGGGGS
T ss_pred CCcccccccCcceEEec
Confidence 47888888888888885
No 9
>d1r7ma2 d.95.2.1 (A:121-225) DNA endonuclease I-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.85 E-value=1e+02 Score=24.33 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=23.9
Q ss_pred ccccccCCCHHHHHHHHHHHHhccEEEEE
Q 006214 103 FLCITTPLSENEVKLLKQRTRDLYQVNMI 131 (656)
Q Consensus 103 ~lC~~~~~t~~~~~~l~~~I~~~Y~~~~~ 131 (656)
.+|. ..+|.+|++++.+.+.+.|..+-.
T Consensus 41 ~l~T-~~Ft~~e~~~L~~~L~~kf~l~~~ 68 (105)
T d1r7ma2 41 VLNT-QSFTFEEVEYLVKGLRNKFQLNCY 68 (105)
T ss_dssp EECC-TTSCHHHHHHHHHHHHHHHCCCEE
T ss_pred EEEe-CCCCHHHHHHHHHHHHHHhCceEE
Confidence 7895 789999999999999999865443
No 10
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=6.07 E-value=1.6e+02 Score=19.82 Aligned_cols=19 Identities=5% Similarity=0.057 Sum_probs=16.7
Q ss_pred cCCCHHHHHHHHHHHHhcc
Q 006214 108 TPLSENEVKLLKQRTRDLY 126 (656)
Q Consensus 108 ~~~t~~~~~~l~~~I~~~Y 126 (656)
.++|++|++.++++++++.
T Consensus 4 ~~lt~~q~~~a~~l~~~G~ 22 (47)
T d1ijwc_ 4 RAINKHEQEQISRLLEKGH 22 (47)
T ss_dssp CSSCHHHHHHHHHHHHTTC
T ss_pred CcCCHHHHHHHHHHHHCCC
Confidence 5799999999999998775
Done!