Query 006217
Match_columns 656
No_of_seqs 310 out of 1053
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 20:05:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006217.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006217hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14215 bHLH-MYC_N: bHLH-MYC 100.0 6.5E-53 1.4E-57 407.6 13.3 163 15-198 1-163 (163)
2 cd00083 HLH Helix-loop-helix d 98.9 2.7E-09 5.8E-14 85.9 4.6 50 459-508 5-60 (60)
3 smart00353 HLH helix loop heli 98.8 3.3E-09 7.2E-14 83.7 4.8 45 464-508 2-52 (53)
4 PF00010 HLH: Helix-loop-helix 98.7 8.1E-09 1.8E-13 82.5 4.2 45 460-504 3-55 (55)
5 cd04897 ACT_ACR_3 ACT domain-c 98.0 4.2E-05 9.2E-10 65.5 10.2 68 588-655 3-74 (75)
6 cd04927 ACT_ACR-like_2 Second 97.9 6.7E-05 1.4E-09 64.1 9.1 69 587-655 1-73 (76)
7 cd04896 ACT_ACR-like_3 ACT dom 97.8 0.00014 3.1E-09 62.3 9.8 67 588-654 2-73 (75)
8 cd04895 ACT_ACR_1 ACT domain-c 97.8 0.00014 3E-09 61.9 9.6 53 588-640 3-55 (72)
9 cd04900 ACT_UUR-like_1 ACT dom 97.6 0.00054 1.2E-08 57.6 10.0 65 588-652 3-72 (73)
10 KOG1318 Helix loop helix trans 97.5 0.00016 3.6E-09 79.3 6.0 50 459-508 234-290 (411)
11 cd04925 ACT_ACR_2 ACT domain-c 97.3 0.0017 3.7E-08 55.0 9.4 67 588-654 2-73 (74)
12 cd04899 ACT_ACR-UUR-like_2 C-t 97.3 0.0023 4.9E-08 52.6 9.8 65 588-652 2-69 (70)
13 cd04926 ACT_ACR_4 C-terminal 97.1 0.0054 1.2E-07 51.6 9.7 67 588-655 3-69 (72)
14 KOG1319 bHLHZip transcription 96.9 0.0012 2.5E-08 65.2 4.5 60 460-519 64-133 (229)
15 cd04928 ACT_TyrKc Uncharacteri 96.7 0.013 2.8E-07 49.4 9.2 64 588-653 3-67 (68)
16 PF13740 ACT_6: ACT domain; PD 96.6 0.012 2.6E-07 50.0 8.6 66 586-654 2-67 (76)
17 KOG2483 Upstream transcription 96.6 0.0033 7.2E-08 64.8 5.6 62 454-515 55-122 (232)
18 PF01842 ACT: ACT domain; Int 96.5 0.019 4.1E-07 46.0 8.6 61 588-653 2-65 (66)
19 PF13291 ACT_4: ACT domain; PD 96.5 0.0085 1.8E-07 50.9 6.8 63 586-650 6-70 (80)
20 PRK00194 hypothetical protein; 96.3 0.023 4.9E-07 49.4 8.6 67 586-653 3-69 (90)
21 cd04873 ACT_UUR-ACR-like ACT d 96.3 0.042 9E-07 44.5 9.6 49 588-636 2-50 (70)
22 cd04872 ACT_1ZPV ACT domain pr 96.3 0.023 5E-07 49.4 8.3 67 587-654 2-68 (88)
23 KOG3561 Aryl-hydrocarbon recep 96.2 0.0037 7.9E-08 74.1 4.0 48 459-506 21-75 (803)
24 cd04875 ACT_F4HF-DF N-terminal 96.2 0.032 6.8E-07 46.8 8.4 65 589-654 2-68 (74)
25 cd04869 ACT_GcvR_2 ACT domains 96.2 0.042 9.1E-07 46.4 9.3 64 589-654 2-71 (81)
26 PRK05007 PII uridylyl-transfer 96.2 0.024 5.2E-07 69.0 10.7 71 584-654 806-879 (884)
27 cd04893 ACT_GcvR_1 ACT domains 96.1 0.047 1E-06 46.5 9.1 65 587-654 2-66 (77)
28 KOG0561 bHLH transcription fac 95.9 0.0047 1E-07 65.0 2.4 48 464-511 66-118 (373)
29 KOG4304 Transcriptional repres 95.7 0.0062 1.3E-07 63.6 2.6 51 459-509 33-94 (250)
30 cd04887 ACT_MalLac-Enz ACT_Mal 95.7 0.049 1.1E-06 45.1 7.5 62 589-652 2-64 (74)
31 PRK00275 glnD PII uridylyl-tra 95.5 0.07 1.5E-06 65.1 11.1 70 585-654 813-886 (895)
32 cd04870 ACT_PSP_1 CT domains f 95.5 0.078 1.7E-06 44.7 8.2 64 588-653 1-64 (75)
33 PRK01759 glnD PII uridylyl-tra 95.5 0.066 1.4E-06 65.0 10.5 70 584-653 781-853 (854)
34 cd04886 ACT_ThrD-II-like C-ter 95.4 0.074 1.6E-06 42.8 7.5 61 589-651 1-66 (73)
35 cd04888 ACT_PheB-BS C-terminal 95.3 0.073 1.6E-06 44.2 7.3 64 588-652 2-66 (76)
36 PRK05092 PII uridylyl-transfer 95.1 0.11 2.5E-06 63.6 10.9 79 576-654 831-915 (931)
37 PRK04374 PII uridylyl-transfer 94.8 0.17 3.7E-06 61.6 11.2 79 576-654 784-867 (869)
38 PRK04435 hypothetical protein; 94.7 0.14 3.1E-06 49.2 8.4 70 582-652 65-135 (147)
39 KOG3960 Myogenic helix-loop-he 94.6 0.056 1.2E-06 55.9 5.6 59 459-517 119-182 (284)
40 PRK03381 PII uridylyl-transfer 94.6 0.17 3.6E-06 61.0 10.4 70 585-654 598-667 (774)
41 TIGR01693 UTase_glnD [Protein- 94.6 0.16 3.5E-06 61.7 10.4 70 584-653 777-849 (850)
42 PRK03059 PII uridylyl-transfer 94.4 0.21 4.6E-06 60.8 10.8 68 585-654 785-855 (856)
43 KOG4029 Transcription factor H 94.4 0.043 9.2E-07 56.4 4.2 56 459-514 110-172 (228)
44 cd04877 ACT_TyrR N-terminal AC 94.1 0.15 3.3E-06 42.8 6.2 59 588-651 2-60 (74)
45 TIGR01693 UTase_glnD [Protein- 93.9 0.27 5.8E-06 59.8 10.4 70 585-654 667-741 (850)
46 PRK03381 PII uridylyl-transfer 93.9 0.34 7.4E-06 58.4 11.1 66 585-652 706-771 (774)
47 PRK01759 glnD PII uridylyl-tra 93.6 0.39 8.4E-06 58.5 11.0 79 576-654 665-749 (854)
48 cd04876 ACT_RelA-SpoT ACT dom 93.3 0.33 7.1E-06 37.5 6.7 61 589-651 1-62 (71)
49 KOG2588 Predicted DNA-binding 93.0 0.062 1.3E-06 64.4 2.8 64 455-518 273-340 (953)
50 PRK05007 PII uridylyl-transfer 92.9 0.6 1.3E-05 57.1 11.2 70 585-654 700-773 (884)
51 PLN03217 transcription factor 92.7 0.13 2.9E-06 45.0 3.7 48 471-518 23-76 (93)
52 PRK03059 PII uridylyl-transfer 92.6 0.62 1.3E-05 56.8 10.6 70 585-654 677-750 (856)
53 cd02116 ACT ACT domains are co 92.5 0.52 1.1E-05 34.4 6.4 35 589-623 1-35 (60)
54 PRK00275 glnD PII uridylyl-tra 92.4 0.59 1.3E-05 57.2 10.2 70 585-654 703-778 (895)
55 cd04874 ACT_Af1403 N-terminal 92.0 1.1 2.3E-05 36.1 8.2 60 588-651 2-62 (72)
56 PRK06027 purU formyltetrahydro 91.9 1 2.2E-05 48.1 10.0 69 585-654 5-75 (286)
57 PRK08577 hypothetical protein; 91.7 1.2 2.5E-05 42.1 9.2 67 585-652 55-123 (136)
58 COG2844 GlnD UTP:GlnB (protein 91.5 0.65 1.4E-05 55.5 8.7 77 576-653 779-857 (867)
59 cd04881 ACT_HSDH-Hom ACT_HSDH_ 91.4 0.7 1.5E-05 37.7 6.6 47 588-634 2-50 (79)
60 PRK13011 formyltetrahydrofolat 91.4 1 2.2E-05 48.1 9.4 67 586-654 7-75 (286)
61 cd04879 ACT_3PGDH-like ACT_3PG 91.3 0.95 2.1E-05 36.0 7.1 59 589-652 2-62 (71)
62 cd04878 ACT_AHAS N-terminal AC 91.2 1.1 2.5E-05 35.7 7.6 61 588-651 2-64 (72)
63 PRK05092 PII uridylyl-transfer 91.1 1.2 2.7E-05 54.7 11.1 69 585-653 731-804 (931)
64 TIGR00655 PurU formyltetrahydr 90.2 1.8 3.9E-05 46.2 9.9 63 588-651 2-66 (280)
65 PRK07334 threonine dehydratase 90.2 1.1 2.3E-05 49.9 8.6 65 585-651 325-394 (403)
66 cd04880 ACT_AAAH-PDT-like ACT 90.0 1.9 4.1E-05 36.1 8.0 62 590-651 3-66 (75)
67 cd04905 ACT_CM-PDT C-terminal 89.6 3.1 6.7E-05 35.3 9.2 63 588-652 3-66 (80)
68 cd04903 ACT_LSD C-terminal ACT 89.4 1.5 3.3E-05 34.9 6.8 58 589-651 2-61 (71)
69 PRK04374 PII uridylyl-transfer 89.1 1.7 3.8E-05 53.1 9.9 70 585-654 689-760 (869)
70 PRK13010 purU formyltetrahydro 88.5 2.2 4.9E-05 45.6 9.1 68 586-653 9-78 (289)
71 cd04894 ACT_ACR-like_1 ACT dom 87.2 3.5 7.7E-05 34.5 7.4 65 588-652 2-67 (69)
72 cd04884 ACT_CBS C-terminal ACT 86.7 3.7 8.1E-05 33.9 7.7 62 589-652 2-66 (72)
73 cd04908 ACT_Bt0572_1 N-termina 86.0 5.4 0.00012 32.5 8.2 56 588-650 3-58 (66)
74 PF13185 GAF_2: GAF domain; PD 85.7 1 2.2E-05 40.9 4.1 62 127-192 68-134 (148)
75 cd04882 ACT_Bt0572_2 C-termina 84.9 3.9 8.4E-05 32.5 6.7 56 589-651 2-59 (65)
76 cd04909 ACT_PDH-BS C-terminal 84.0 5 0.00011 32.7 7.1 34 588-621 3-36 (69)
77 cd04904 ACT_AAAH ACT domain of 82.5 9.7 0.00021 32.1 8.4 60 589-652 3-63 (74)
78 cd04901 ACT_3PGDH C-terminal A 82.3 1.5 3.3E-05 35.4 3.3 58 589-651 2-59 (69)
79 cd04883 ACT_AcuB C-terminal AC 81.9 11 0.00024 30.7 8.4 59 588-651 3-63 (72)
80 PRK10872 relA (p)ppGpp synthet 81.1 4.6 0.0001 48.6 8.1 65 586-652 666-732 (743)
81 cd04889 ACT_PDH-BS-like C-term 81.0 4.9 0.00011 31.4 5.8 44 589-632 1-45 (56)
82 PF13710 ACT_5: ACT domain; PD 80.7 5.7 0.00012 32.8 6.2 56 595-653 1-58 (63)
83 TIGR01817 nifA Nif-specific re 80.0 2.3 5E-05 48.9 5.0 76 121-198 68-152 (534)
84 cd04931 ACT_PAH ACT domain of 79.4 14 0.00031 32.8 8.7 50 587-636 15-65 (90)
85 PRK11092 bifunctional (p)ppGpp 78.0 6.1 0.00013 47.4 7.8 64 586-651 626-690 (702)
86 TIGR00691 spoT_relA (p)ppGpp s 77.7 6.3 0.00014 47.1 7.8 64 586-651 610-674 (683)
87 KOG3560 Aryl-hydrocarbon recep 77.6 2.1 4.6E-05 48.9 3.5 40 463-502 31-76 (712)
88 COG3830 ACT domain-containing 77.5 5.2 0.00011 35.8 5.3 66 587-653 4-69 (90)
89 PRK11589 gcvR glycine cleavage 77.4 7 0.00015 39.4 6.9 66 585-653 7-72 (190)
90 cd04902 ACT_3PGDH-xct C-termin 75.9 8.7 0.00019 31.1 6.0 59 589-652 2-62 (73)
91 TIGR00119 acolac_sm acetolacta 74.8 12 0.00026 36.7 7.5 63 588-653 3-67 (157)
92 PRK13562 acetolactate synthase 73.9 11 0.00023 33.5 6.2 64 588-653 4-69 (84)
93 PRK11061 fused phosphoenolpyru 73.8 5.1 0.00011 48.4 5.7 66 121-188 67-137 (748)
94 PRK11152 ilvM acetolactate syn 73.7 18 0.00039 31.3 7.5 63 588-654 5-69 (76)
95 COG4492 PheB ACT domain-contai 73.6 14 0.00031 35.4 7.4 68 584-652 70-138 (150)
96 KOG3558 Hypoxia-inducible fact 73.5 2.6 5.7E-05 49.5 3.1 38 465-502 53-97 (768)
97 cd04922 ACT_AKi-HSDH-ThrA_2 AC 72.8 23 0.0005 28.0 7.7 59 588-653 3-64 (66)
98 cd04885 ACT_ThrD-I Tandem C-te 72.0 22 0.00047 29.2 7.5 59 590-651 2-61 (68)
99 PRK11895 ilvH acetolactate syn 71.4 16 0.00036 35.9 7.7 63 588-653 4-68 (161)
100 cd04919 ACT_AK-Hom3_2 ACT doma 69.7 31 0.00068 27.5 7.8 59 588-653 3-64 (66)
101 cd04929 ACT_TPH ACT domain of 69.6 30 0.00066 29.5 8.0 57 592-652 6-63 (74)
102 CHL00100 ilvH acetohydroxyacid 67.2 24 0.00052 35.2 7.9 64 588-654 4-69 (174)
103 cd04916 ACT_AKiii-YclM-BS_2 AC 66.4 37 0.00081 26.8 7.6 59 588-653 3-64 (66)
104 PRK00227 glnD PII uridylyl-tra 64.1 28 0.00061 41.8 9.1 70 584-654 544-614 (693)
105 KOG3559 Transcriptional regula 63.3 5.9 0.00013 44.0 3.0 38 466-503 9-53 (598)
106 PRK06737 acetolactate synthase 63.0 32 0.00069 29.8 6.9 63 588-653 4-68 (76)
107 PRK11589 gcvR glycine cleavage 62.9 35 0.00075 34.5 8.2 65 587-653 96-166 (190)
108 PRK06382 threonine dehydratase 61.9 36 0.00077 38.0 8.9 67 583-651 327-398 (406)
109 TIGR01127 ilvA_1Cterm threonin 61.0 35 0.00075 37.5 8.6 67 583-651 302-373 (380)
110 COG0788 PurU Formyltetrahydrof 60.5 40 0.00086 36.0 8.3 67 586-654 7-76 (287)
111 PRK08198 threonine dehydratase 60.0 43 0.00093 37.2 9.2 66 584-651 325-395 (404)
112 cd04892 ACT_AK-like_2 ACT doma 58.8 34 0.00074 26.2 6.0 34 588-621 2-38 (65)
113 cd04930 ACT_TH ACT domain of t 57.8 55 0.0012 30.4 8.0 61 588-652 43-104 (115)
114 cd04924 ACT_AK-Arch_2 ACT doma 57.5 65 0.0014 25.3 7.5 59 588-653 3-64 (66)
115 cd04912 ACT_AKiii-LysC-EC-like 56.8 49 0.0011 27.7 7.0 62 588-651 3-67 (75)
116 cd04868 ACT_AK-like ACT domain 56.8 48 0.001 24.8 6.4 27 596-622 13-39 (60)
117 cd04906 ACT_ThrD-I_1 First of 56.1 76 0.0016 27.3 8.2 62 587-651 2-64 (85)
118 cd04932 ACT_AKiii-LysC-EC_1 AC 55.5 94 0.002 26.4 8.5 43 588-632 3-48 (75)
119 cd04937 ACT_AKi-DapG-BS_2 ACT 52.1 81 0.0018 25.4 7.3 50 595-653 13-62 (64)
120 cd04935 ACT_AKiii-DAPDC_1 ACT 50.5 56 0.0012 27.8 6.3 56 594-651 12-67 (75)
121 COG2844 GlnD UTP:GlnB (protein 50.1 73 0.0016 38.9 9.2 55 579-633 677-732 (867)
122 PF01590 GAF: GAF domain; Int 49.8 30 0.00064 31.3 4.9 63 121-183 51-131 (154)
123 smart00065 GAF Domain present 49.8 30 0.00066 29.4 4.8 59 121-181 51-114 (149)
124 PF05088 Bac_GDH: Bacterial NA 48.9 76 0.0017 41.5 9.7 70 585-654 488-562 (1528)
125 PRK08178 acetolactate synthase 48.3 75 0.0016 28.9 7.0 64 586-653 8-73 (96)
126 COG0317 SpoT Guanosine polypho 47.5 56 0.0012 39.3 7.8 51 586-636 627-678 (701)
127 cd04923 ACT_AK-LysC-DapG-like_ 46.9 1.1E+02 0.0025 23.5 7.3 57 588-653 2-61 (63)
128 KOG3910 Helix loop helix trans 46.8 14 0.0003 42.2 2.5 54 458-511 526-586 (632)
129 cd04933 ACT_AK1-AT_1 ACT domai 45.4 1.3E+02 0.0028 26.0 7.8 43 588-632 3-48 (78)
130 PRK11899 prephenate dehydratas 44.3 1.3E+02 0.0028 32.3 9.3 64 589-654 197-261 (279)
131 cd04890 ACT_AK-like_1 ACT doma 43.8 80 0.0017 25.0 6.0 36 595-632 12-47 (62)
132 KOG3898 Transcription factor N 43.4 15 0.00033 38.7 2.1 44 463-506 77-126 (254)
133 PF02120 Flg_hook: Flagellar h 43.1 84 0.0018 26.6 6.4 49 575-623 26-80 (85)
134 KOG4447 Transcription factor T 42.8 16 0.00034 35.8 1.9 47 459-505 79-130 (173)
135 cd04918 ACT_AK1-AT_2 ACT domai 41.0 1E+02 0.0022 25.1 6.2 51 596-653 13-63 (65)
136 cd04934 ACT_AK-Hom3_1 CT domai 37.9 1.8E+02 0.0039 24.6 7.5 59 588-651 3-65 (73)
137 PRK08526 threonine dehydratase 37.2 1.4E+02 0.0031 33.5 8.6 67 583-651 323-394 (403)
138 cd04936 ACT_AKii-LysC-BS-like_ 37.1 1.9E+02 0.0042 22.2 7.3 50 595-653 12-61 (63)
139 COG3978 Acetolactate synthase 36.0 2.3E+02 0.0049 25.2 7.7 63 587-653 4-68 (86)
140 cd04913 ACT_AKii-LysC-BS-like_ 35.1 2.3E+02 0.0049 22.4 7.6 28 593-620 9-36 (75)
141 cd04915 ACT_AK-Ectoine_2 ACT d 35.0 1.3E+02 0.0027 24.7 5.9 51 596-653 14-64 (66)
142 cd04921 ACT_AKi-HSDH-ThrA-like 34.7 1.5E+02 0.0032 24.5 6.5 36 588-623 3-41 (80)
143 PF07009 DUF1312: Protein of u 33.8 27 0.00059 32.0 2.0 46 124-171 55-100 (113)
144 PRK15429 formate hydrogenlyase 32.8 62 0.0014 38.6 5.3 60 123-182 253-318 (686)
145 PRK05022 anaerobic nitric oxid 32.4 48 0.001 38.1 4.1 78 121-199 65-153 (509)
146 PRK15385 magnesium transport p 31.6 2.8E+02 0.0061 28.9 9.1 62 586-649 142-209 (225)
147 PF13492 GAF_3: GAF domain; PD 29.5 67 0.0015 28.0 3.7 60 121-192 49-114 (129)
148 PF13840 ACT_7: ACT domain ; P 27.6 1.3E+02 0.0027 24.7 4.8 35 584-618 4-42 (65)
149 PRK11898 prephenate dehydratas 27.0 3E+02 0.0066 29.4 8.7 63 588-652 198-262 (283)
150 PRK10622 pheA bifunctional cho 26.0 3.4E+02 0.0074 30.4 9.2 59 594-654 305-364 (386)
151 PF11619 P53_C: Transcription 25.2 78 0.0017 26.8 3.0 34 576-609 5-39 (71)
152 PRK00227 glnD PII uridylyl-tra 22.3 1.3E+02 0.0028 36.3 5.4 60 587-654 632-691 (693)
153 cd04911 ACT_AKiii-YclM-BS_1 AC 21.7 1.2E+02 0.0026 26.3 3.7 37 595-633 13-49 (76)
154 PRK00907 hypothetical protein; 20.9 3.6E+02 0.0078 24.2 6.6 64 586-651 17-84 (92)
155 PRK09034 aspartate kinase; Rev 20.6 3.8E+02 0.0082 30.5 8.4 67 580-653 379-448 (454)
156 TIGR00656 asp_kin_monofn aspar 20.4 3.4E+02 0.0074 30.0 7.9 51 580-630 254-307 (401)
157 cd04891 ACT_AK-LysC-DapG-like_ 20.4 2.8E+02 0.0061 20.7 5.3 27 594-620 9-35 (61)
158 TIGR02079 THD1 threonine dehyd 20.1 5E+02 0.011 29.1 9.1 67 583-651 322-390 (409)
No 1
>PF14215 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription factors N-terminal
Probab=100.00 E-value=6.5e-53 Score=407.62 Aligned_cols=163 Identities=51% Similarity=0.879 Sum_probs=150.8
Q ss_pred HHHHHHHhhcCCCcEEEEeeecCCCCCccEEeccceecCCcccccccccccCCchhhhhHHHHHHHHHHHhhhccccccc
Q 006217 15 LRKQLAVAVRSIQWSYAIFWSLSAAQQGVLEWGDGYYNGDIKTRKTMQAMELTPDKIGLQRSKQLRELYESLLKGESELA 94 (656)
Q Consensus 15 Lq~~L~~~~~~~~WtYAiFWq~s~~~~gvL~WgDGyy~g~~k~~~~~~~~e~~~~~~~~~r~~~lreL~~sl~~g~~~~~ 94 (656)
||++|+.+|++.+|+||||||+++++ .+|+||||||+|++++++.. + +.+++|+++||+||.++.
T Consensus 1 Lq~~Lr~lv~~~~W~YaVFWk~~~~~-~~L~W~DG~~~g~~~~~~~~---~----~~~~~~~~~l~~l~~~~~------- 65 (163)
T PF14215_consen 1 LQQRLRSLVENSQWTYAVFWKLSPDN-SVLVWGDGYCNGPKETRKNG---E----EEQEQRSKVLRELHSSFS------- 65 (163)
T ss_pred ChHHHHHHhCCCCCcEEEEeEEcCCC-CeeeEcceeecCCcccccch---h----hccchhhhHHHHHhhhcc-------
Confidence 79999999999999999999999777 59999999999998777644 1 345899999999995553
Q ss_pred cCCCCCCCCCCCCCcchheeeeeeeeeecCCCCccceeeeCCCcEEeeCCCcCCCcchhhHHhhhhcCCcEEEEeeeCCe
Q 006217 95 YKRPSAALSPEDLTDAEWYYLVCMSFVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLDG 174 (656)
Q Consensus 95 ~~~~~~al~~edltd~Ewfyl~sms~sF~~G~GlpGra~~~g~~~Wl~~~~~~~~~~~~R~~la~sagIQTvvciP~~~G 174 (656)
.+++.+++|+|+||||++||+|+| |+|+|||||++|+|+||++++.++.+.|+|+.+|+++|||||||||+.+|
T Consensus 66 ----~~~~~~~~v~~~e~f~~~s~~~sf--g~G~~G~a~~sg~~~Wi~~~~~~~~~~~~r~~~aq~~~~~Tiv~IPv~~G 139 (163)
T PF14215_consen 66 ----SYALSPEEVTDTEWFYLVSMSYSF--GEGIPGRAAASGQHIWISGANELDSSYCERAWLAQFAGIQTIVCIPVPNG 139 (163)
T ss_pred ----ccccccchhHHHHHHhhceeeEEe--cCCccEEEeecCccEEEeCCCccccccchhhhhhcccccceEEEEEecCC
Confidence 235679999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccccCChhHHHHHHHHh
Q 006217 175 VIELGVTELVPEDPSLLQHIKASL 198 (656)
Q Consensus 175 VvELGSt~~v~Ed~~lv~~ik~~F 198 (656)
|||||||++|+||++||++||++|
T Consensus 140 VvELGSt~~I~Ed~~~v~~vk~~F 163 (163)
T PF14215_consen 140 VVELGSTEKIPEDSNLVQRVKSLF 163 (163)
T ss_pred EEEeeeeeeeccCHHHHHHHHhhC
Confidence 999999999999999999999998
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=98.85 E-value=2.7e-09 Score=85.94 Aligned_cols=50 Identities=32% Similarity=0.585 Sum_probs=46.4
Q ss_pred ccchhhHHHhhH---HHhHHHHHhcCCCC---CCCcccchHHHHHHHHHHHHHHHH
Q 006217 459 CEEHISSDKRTE---NEKFMVLRSMVPYI---SEVDKASILSDTIKYLKKLEARVE 508 (656)
Q Consensus 459 ~~~h~~~ER~RR---n~~f~~LrslvP~~---~k~dKaSIL~daI~Yik~L~~~v~ 508 (656)
...|...||+|| |..|..|+++||.. .|+||++||..||+||+.|+.+++
T Consensus 5 r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 5 REAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 457999999999 99999999999988 899999999999999999998763
No 3
>smart00353 HLH helix loop helix domain.
Probab=98.84 E-value=3.3e-09 Score=83.69 Aligned_cols=45 Identities=36% Similarity=0.602 Sum_probs=41.5
Q ss_pred hHHHhhH---HHhHHHHHhcCCC---CCCCcccchHHHHHHHHHHHHHHHH
Q 006217 464 SSDKRTE---NEKFMVLRSMVPY---ISEVDKASILSDTIKYLKKLEARVE 508 (656)
Q Consensus 464 ~~ER~RR---n~~f~~LrslvP~---~~k~dKaSIL~daI~Yik~L~~~v~ 508 (656)
..||+|| |+.|..|+++||. ..|++|++||..||+||++|+.+++
T Consensus 2 ~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 2 ARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 5799888 9999999999994 6789999999999999999999886
No 4
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=98.75 E-value=8.1e-09 Score=82.47 Aligned_cols=45 Identities=36% Similarity=0.639 Sum_probs=42.1
Q ss_pred cchhhHHHhhH---HHhHHHHHhcCCCC-----CCCcccchHHHHHHHHHHHH
Q 006217 460 EEHISSDKRTE---NEKFMVLRSMVPYI-----SEVDKASILSDTIKYLKKLE 504 (656)
Q Consensus 460 ~~h~~~ER~RR---n~~f~~LrslvP~~-----~k~dKaSIL~daI~Yik~L~ 504 (656)
..|+..||+|| |..|..|+.+||.. .|.+|++||..||+||++||
T Consensus 3 ~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 3 QKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 47999999999 99999999999976 78899999999999999997
No 5
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.04 E-value=4.2e-05 Score=65.55 Aligned_cols=68 Identities=9% Similarity=0.218 Sum_probs=56.9
Q ss_pred EEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeC-CCcccC---HHHHHHHHHHHhhh
Q 006217 588 LIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFR-GAAIAP---AGIIEQALWKIAGK 655 (656)
Q Consensus 588 lIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~-~~~~~s---~~~IkqAL~~vi~k 655 (656)
.|+|.|+.|||||.+|..+|.+++|+|.+|.++|.++.+.-++..+-. |.+..+ ...|+++|..++.+
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~ 74 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIER 74 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999999999998888888654 333323 45788888888764
No 6
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.92 E-value=6.7e-05 Score=64.05 Aligned_cols=69 Identities=20% Similarity=0.222 Sum_probs=56.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHccCCeEEEEEeec-CCceEEEEEEEEeCCCcc---cCHHHHHHHHHHHhhh
Q 006217 587 VLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSN-LDGVLTLALKSTFRGAAI---APAGIIEQALWKIAGK 655 (656)
Q Consensus 587 vlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~-~dg~l~~ti~aKv~~~~~---~s~~~IkqAL~~vi~k 655 (656)
++|+|.|+.|+|+|.+|..+|..+||.|++|++++ .+|.+.-++...-.+... .-..+|+++|.++++.
T Consensus 1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHch
Confidence 47999999999999999999999999999999996 899988888886433221 2345688888888875
No 7
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.84 E-value=0.00014 Score=62.31 Aligned_cols=67 Identities=15% Similarity=0.095 Sum_probs=55.0
Q ss_pred EEEEEccCCCChHHHHHHHHHccCCeEEEEEee--cCCceEEEEEEEEeCCCcccC---HHHHHHHHHHHhh
Q 006217 588 LIEMRCPSREYILLDIMDAINNLHLDAYSVVSS--NLDGVLTLALKSTFRGAAIAP---AGIIEQALWKIAG 654 (656)
Q Consensus 588 lIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS--~~dg~l~~ti~aKv~~~~~~s---~~~IkqAL~~vi~ 654 (656)
+|+|.|+.|+|||.+|..+|..++|+|..|.++ |.+..+.-+|.....+.+..+ ...|+++|..++-
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~~l~ 73 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLREEMV 73 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHHHhc
Confidence 589999999999999999999999999999999 999888777777554544223 4577888877653
No 8
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.84 E-value=0.00014 Score=61.92 Aligned_cols=53 Identities=17% Similarity=0.154 Sum_probs=46.7
Q ss_pred EEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCccc
Q 006217 588 LIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIA 640 (656)
Q Consensus 588 lIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~ 640 (656)
+|+|.++.|+|+|.+|.++|.++||+|+.|.++|.++.+.-+|...-..+..+
T Consensus 3 viev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl 55 (72)
T cd04895 3 LVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKL 55 (72)
T ss_pred EEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCC
Confidence 68999999999999999999999999999999999999888888875433334
No 9
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.62 E-value=0.00054 Score=57.62 Aligned_cols=65 Identities=17% Similarity=0.102 Sum_probs=49.7
Q ss_pred EEEEEccCCCChHHHHHHHHHccCCeEEEEEeecC-CceEEEEEEEEeCCCcccCH----HHHHHHHHHH
Q 006217 588 LIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNL-DGVLTLALKSTFRGAAIAPA----GIIEQALWKI 652 (656)
Q Consensus 588 lIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~-dg~l~~ti~aKv~~~~~~s~----~~IkqAL~~v 652 (656)
.|.|.|+.|+|+|.+|..+|..+||+|++|.+.+. ||.+.-++...-........ ..|+++|.++
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~ 72 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDA 72 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhh
Confidence 58899999999999999999999999999999766 79988888886433222322 3355555443
No 10
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=97.46 E-value=0.00016 Score=79.33 Aligned_cols=50 Identities=20% Similarity=0.486 Sum_probs=45.1
Q ss_pred ccchhhHHHhhH---HHhHHHHHhcCCCC----CCCcccchHHHHHHHHHHHHHHHH
Q 006217 459 CEEHISSDKRTE---NEKFMVLRSMVPYI----SEVDKASILSDTIKYLKKLEARVE 508 (656)
Q Consensus 459 ~~~h~~~ER~RR---n~~f~~LrslvP~~----~k~dKaSIL~daI~Yik~L~~~v~ 508 (656)
..+|.+.||||| |+++..|..|||.. .|..|.+||.-+.+||++|++..+
T Consensus 234 rd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q 290 (411)
T KOG1318|consen 234 RDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQ 290 (411)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHH
Confidence 458999999999 99999999999986 455699999999999999998776
No 11
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.33 E-value=0.0017 Score=55.00 Aligned_cols=67 Identities=21% Similarity=0.262 Sum_probs=54.5
Q ss_pred EEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeC--CCcccC---HHHHHHHHHHHhh
Q 006217 588 LIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFR--GAAIAP---AGIIEQALWKIAG 654 (656)
Q Consensus 588 lIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~--~~~~~s---~~~IkqAL~~vi~ 654 (656)
+|+|.++.|+|+|.+|..+|..+|+.|+.+++++.++.+..++.+.-. +..... ...|+++|.+++.
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 589999999999999999999999999999999999999988887632 221122 4577777777653
No 12
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.31 E-value=0.0023 Score=52.55 Aligned_cols=65 Identities=17% Similarity=0.129 Sum_probs=50.5
Q ss_pred EEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCH---HHHHHHHHHH
Q 006217 588 LIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPA---GIIEQALWKI 652 (656)
Q Consensus 588 lIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~---~~IkqAL~~v 652 (656)
.|.|.|+.++|+|.+|+.+|.++++.|.++++.+.++.+...+.+.-......+. ..|+++|.++
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~ 69 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGEA 69 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence 5889999999999999999999999999999998877888888887544322333 2355555443
No 13
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.06 E-value=0.0054 Score=51.59 Aligned_cols=67 Identities=15% Similarity=0.070 Sum_probs=52.3
Q ss_pred EEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHhhh
Q 006217 588 LIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIAGK 655 (656)
Q Consensus 588 lIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~k 655 (656)
.|.|.++.++|+|.+|..+|.+++|.|+++.+.+.++....+|+..-......+. +..++|++.|+.
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~~~-~~~~~l~~~l~~ 69 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDP-KTIEAVRQEIGP 69 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcCCH-HHHHHHHHHhcc
Confidence 5778999999999999999999999999999998888877888876433332343 445567766653
No 14
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=96.86 E-value=0.0012 Score=65.19 Aligned_cols=60 Identities=22% Similarity=0.392 Sum_probs=50.9
Q ss_pred cchhhHHHhhH---HHhHHHHHhcCCCC-------CCCcccchHHHHHHHHHHHHHHHHHHHhccccCCC
Q 006217 460 EEHISSDKRTE---NEKFMVLRSMVPYI-------SEVDKASILSDTIKYLKKLEARVEELESCMYSVDS 519 (656)
Q Consensus 460 ~~h~~~ER~RR---n~~f~~LrslvP~~-------~k~dKaSIL~daI~Yik~L~~~v~~Le~~~~~l~~ 519 (656)
..|.-+||+|| |.-|..|+.|||-. .|..||-||..+|+||..|+..+..-+.+...|..
T Consensus 64 ~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k 133 (229)
T KOG1319|consen 64 RAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRK 133 (229)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36999999999 99999999999964 36678999999999999999988887777655543
No 15
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.73 E-value=0.013 Score=49.44 Aligned_cols=64 Identities=16% Similarity=0.088 Sum_probs=53.4
Q ss_pred EEEEEccCCCChHHHHHHHHHccCCeEEEEEee-cCCceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 006217 588 LIEMRCPSREYILLDIMDAINNLHLDAYSVVSS-NLDGVLTLALKSTFRGAAIAPAGIIEQALWKIA 653 (656)
Q Consensus 588 lIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS-~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 653 (656)
.|-|.|+.|+|+|.+|..+|..+||.|+.|++- +.||+++-++.+.-.+ .-....+.++|++.+
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~--~~~~~~~~~~~~~~~ 67 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWK--RGETAALGHALQKEI 67 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCC--ccchHHHHHHHHHhh
Confidence 467889999999999999999999999999987 5689988888887332 245678888888765
No 16
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=96.64 E-value=0.012 Score=50.03 Aligned_cols=66 Identities=18% Similarity=0.215 Sum_probs=56.3
Q ss_pred eEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 006217 586 DVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIAG 654 (656)
Q Consensus 586 dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 654 (656)
.++|.+.++.|||++..|..+|.+.|..+..++.++.++.|.+.+.+.+.. .+.+.++.+|.++..
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~---~~~~~l~~~L~~l~~ 67 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPE---DSLERLESALEELAE 67 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESH---HHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCc---ccHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999998888763 377899999988754
No 17
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=96.57 E-value=0.0033 Score=64.77 Aligned_cols=62 Identities=21% Similarity=0.329 Sum_probs=50.0
Q ss_pred CCcccccchhhHHHhhH---HHhHHHHHhcCCCC-CCC--cccchHHHHHHHHHHHHHHHHHHHhccc
Q 006217 454 ESDNFCEEHISSDKRTE---NEKFMVLRSMVPYI-SEV--DKASILSDTIKYLKKLEARVEELESCMY 515 (656)
Q Consensus 454 ~~~~~~~~h~~~ER~RR---n~~f~~LrslvP~~-~k~--dKaSIL~daI~Yik~L~~~v~~Le~~~~ 515 (656)
.+......|+.-||+|| .+.|..|+-+||.+ ... +.++||..|+.||++|+.+..+.+..++
T Consensus 55 ~~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e 122 (232)
T KOG2483|consen 55 SAASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIE 122 (232)
T ss_pred CCCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHH
Confidence 45667789999999999 89999999999986 222 3589999999999999987765554443
No 18
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=96.51 E-value=0.019 Score=46.00 Aligned_cols=61 Identities=13% Similarity=0.188 Sum_probs=47.4
Q ss_pred EEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCc---eEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 006217 588 LIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDG---VLTLALKSTFRGAAIAPAGIIEQALWKIA 653 (656)
Q Consensus 588 lIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg---~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 653 (656)
.|.|.|+.|+|+|.+|..+|.++++.|.++.+....+ .+...+... ......+.++|+++.
T Consensus 2 ~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~ 65 (66)
T PF01842_consen 2 RVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD-----EEDLEKLLEELEALP 65 (66)
T ss_dssp EEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE-----GHGHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC-----CCCHHHHHHHHHccc
Confidence 5889999999999999999999999999998877654 222222221 356778888888875
No 19
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=96.50 E-value=0.0085 Score=50.90 Aligned_cols=63 Identities=19% Similarity=0.239 Sum_probs=49.3
Q ss_pred eEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecC--CceEEEEEEEEeCCCcccCHHHHHHHHH
Q 006217 586 DVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNL--DGVLTLALKSTFRGAAIAPAGIIEQALW 650 (656)
Q Consensus 586 dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~--dg~l~~ti~aKv~~~~~~s~~~IkqAL~ 650 (656)
.+.|+|.|..|+|+|.+|..+|.+.++.+.++++... ++.+.+.|..+|++. .....|-++|+
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~--~~L~~ii~~L~ 70 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDL--EHLNQIIRKLR 70 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSH--HHHHHHHHHHC
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCH--HHHHHHHHHHH
Confidence 4679999999999999999999999999999999884 789999999998763 33444444443
No 20
>PRK00194 hypothetical protein; Validated
Probab=96.31 E-value=0.023 Score=49.44 Aligned_cols=67 Identities=10% Similarity=0.223 Sum_probs=56.6
Q ss_pred eEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 006217 586 DVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIA 653 (656)
Q Consensus 586 dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 653 (656)
.+.|.+.|+.++|++.+|.+.|.+.|+.|.+.+..+.++.+...+.+.+... ..++..+++.|.++-
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~l~~l~ 69 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISES-KKDFAELKEELEELG 69 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecCC-CCCHHHHHHHHHHHH
Confidence 4689999999999999999999999999999988888888888777776541 356788988888754
No 21
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=96.31 E-value=0.042 Score=44.53 Aligned_cols=49 Identities=20% Similarity=0.186 Sum_probs=42.5
Q ss_pred EEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCC
Q 006217 588 LIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRG 636 (656)
Q Consensus 588 lIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~ 636 (656)
.|.|.|+.++|+|.+|+.+|.++++.|.++.+.+.++.....+++.-..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~ 50 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSD 50 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCC
Confidence 4788999999999999999999999999999888766777777776544
No 22
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.26 E-value=0.023 Score=49.42 Aligned_cols=67 Identities=12% Similarity=0.210 Sum_probs=56.7
Q ss_pred EEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 006217 587 VLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIAG 654 (656)
Q Consensus 587 vlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 654 (656)
+.|.+.|+.++|++.+|.+.|-++|+++.+++..+..+.+.+.+.+.+.+. ..++.+++++|..+..
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~~-~~~~~~L~~~l~~l~~ 68 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISES-NLDFAELQEELEELGK 68 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCCC-CCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999999988888888877777776531 3678999999887653
No 23
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=96.22 E-value=0.0037 Score=74.10 Aligned_cols=48 Identities=25% Similarity=0.337 Sum_probs=44.0
Q ss_pred ccchhhHHHhhH---HHhHHHHHhcCCCC----CCCcccchHHHHHHHHHHHHHH
Q 006217 459 CEEHISSDKRTE---NEKFMVLRSMVPYI----SEVDKASILSDTIKYLKKLEAR 506 (656)
Q Consensus 459 ~~~h~~~ER~RR---n~~f~~LrslvP~~----~k~dKaSIL~daI~Yik~L~~~ 506 (656)
..+|..+||||| |..+..|.+|||.. -|+||.+||..||.+||.++..
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 558999999999 88999999999975 5999999999999999999874
No 24
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.17 E-value=0.032 Score=46.81 Aligned_cols=65 Identities=14% Similarity=0.166 Sum_probs=50.1
Q ss_pred EEEEccCCCChHHHHHHHHHccCCeEEEEEeec--CCceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 006217 589 IEMRCPSREYILLDIMDAINNLHLDAYSVVSSN--LDGVLTLALKSTFRGAAIAPAGIIEQALWKIAG 654 (656)
Q Consensus 589 IeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~--~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 654 (656)
|.|.|+.|+|++.+|.+.|.++|+.+...+..+ ..+.|...+...+... ..+..+++++|..+-.
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~l~~~l~~l~~ 68 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGF-DLSREALEAAFAPVAA 68 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCC-CCCHHHHHHHHHHHHH
Confidence 789999999999999999999999999998875 4455444444443321 2578999999987653
No 25
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=96.17 E-value=0.042 Score=46.43 Aligned_cols=64 Identities=6% Similarity=0.117 Sum_probs=53.9
Q ss_pred EEEEccCCCChHHHHHHHHHccCCeEEEEEeecCC------ceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 006217 589 IEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLD------GVLTLALKSTFRGAAIAPAGIIEQALWKIAG 654 (656)
Q Consensus 589 IeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~d------g~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 654 (656)
|.+.|+.++|++.+|-+.|.+.|+++..++..+.+ +.+...+...+.. ..+..+++.+|..+..
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~--~~~~~~l~~~l~~l~~ 71 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA--GTDLDALREELEELCD 71 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC--CCCHHHHHHHHHHHHH
Confidence 78999999999999999999999999999887765 6777777776653 4688999999987643
No 26
>PRK05007 PII uridylyl-transferase; Provisional
Probab=96.16 E-value=0.024 Score=68.98 Aligned_cols=71 Identities=7% Similarity=0.004 Sum_probs=57.9
Q ss_pred CCeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccC---HHHHHHHHHHHhh
Q 006217 584 EMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAP---AGIIEQALWKIAG 654 (656)
Q Consensus 584 e~dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s---~~~IkqAL~~vi~ 654 (656)
+.-..|+|.|..|+|||.+|.++|.++||+|++|.|+|.++.+.-+|-+.-.++..++ ...|+++|..++.
T Consensus 806 ~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l~ 879 (884)
T PRK05007 806 DRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALNEELQQELRQRLTEALN 879 (884)
T ss_pred CCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHHh
Confidence 4567899999999999999999999999999999999999998888888644433455 3466677766653
No 27
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=96.06 E-value=0.047 Score=46.53 Aligned_cols=65 Identities=17% Similarity=0.096 Sum_probs=55.4
Q ss_pred EEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 006217 587 VLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIAG 654 (656)
Q Consensus 587 vlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 654 (656)
+.|.+.||.|+|+..+|-..|.+.|..++.++....++.|..-+...+.. .+...++++|..+..
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~~---~~~~~l~~~l~~~~~ 66 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSW---DAIAKLEAALPGLAR 66 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEecc---ccHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999888888887766666542 478899988887653
No 28
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=95.86 E-value=0.0047 Score=64.96 Aligned_cols=48 Identities=35% Similarity=0.560 Sum_probs=40.4
Q ss_pred hHHHhhH---HHhHHHHHhcCCC--CCCCcccchHHHHHHHHHHHHHHHHHHH
Q 006217 464 SSDKRTE---NEKFMVLRSMVPY--ISEVDKASILSDTIKYLKKLEARVEELE 511 (656)
Q Consensus 464 ~~ER~RR---n~~f~~LrslvP~--~~k~dKaSIL~daI~Yik~L~~~v~~Le 511 (656)
.-||||- |.-|..||+|||. .-|..||.||..+.+||.+|+...-+|-
T Consensus 66 sNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ll 118 (373)
T KOG0561|consen 66 SNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTELL 118 (373)
T ss_pred chHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcccccc
Confidence 3477777 9999999999996 4788999999999999999987665543
No 29
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=95.71 E-value=0.0062 Score=63.59 Aligned_cols=51 Identities=24% Similarity=0.317 Sum_probs=44.4
Q ss_pred ccchhhHHHhhH---HHhHHHHHhcCCC--------CCCCcccchHHHHHHHHHHHHHHHHH
Q 006217 459 CEEHISSDKRTE---NEKFMVLRSMVPY--------ISEVDKASILSDTIKYLKKLEARVEE 509 (656)
Q Consensus 459 ~~~h~~~ER~RR---n~~f~~LrslvP~--------~~k~dKaSIL~daI~Yik~L~~~v~~ 509 (656)
..+|=+.||||| |+-+..|+.|||- .+|++||=||.-|++|+++|++....
T Consensus 33 k~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 33 KVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 456778999999 9999999999994 37889999999999999999876543
No 30
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.70 E-value=0.049 Score=45.14 Aligned_cols=62 Identities=15% Similarity=0.093 Sum_probs=50.0
Q ss_pred EEEEccCCCChHHHHHHHHHccCCeEEEEEeecC-CceEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 006217 589 IEMRCPSREYILLDIMDAINNLHLDAYSVVSSNL-DGVLTLALKSTFRGAAIAPAGIIEQALWKI 652 (656)
Q Consensus 589 IeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~-dg~l~~ti~aKv~~~~~~s~~~IkqAL~~v 652 (656)
|+|.++.|+|+|.+|+.+|.+.+..+.++++... ++...+.|..++.+. .....|.++|+++
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~~--~~l~~i~~~L~~i 64 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPSE--EHAETIVAAVRAL 64 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCCH--HHHHHHHHHHhcC
Confidence 7889999999999999999999999999988765 578778888887763 3455566666543
No 31
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=95.55 E-value=0.07 Score=65.13 Aligned_cols=70 Identities=13% Similarity=0.066 Sum_probs=58.8
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCccc-C---HHHHHHHHHHHhh
Q 006217 585 MDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIA-P---AGIIEQALWKIAG 654 (656)
Q Consensus 585 ~dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~-s---~~~IkqAL~~vi~ 654 (656)
.-..|+|.++.|+|||.+|..+|..+||+|+.|.|+|.++.+.-+|.+.-..+... + ...|+++|.+++.
T Consensus 813 ~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~ 886 (895)
T PRK00275 813 PVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLD 886 (895)
T ss_pred CeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 45689999999999999999999999999999999999999999999875433323 3 3568888888774
No 32
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.53 E-value=0.078 Score=44.74 Aligned_cols=64 Identities=17% Similarity=0.198 Sum_probs=55.3
Q ss_pred EEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 006217 588 LIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIA 653 (656)
Q Consensus 588 lIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 653 (656)
+|.+.++.|||+..+|-++|.++++++..+..++.++.|.+.+.+.+.. ..++.+++++|..+.
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~--~~~~~~l~~~l~~l~ 64 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPD--SADSEALLKDLLFKA 64 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCC--CCCHHHHHHHHHHHH
Confidence 3788999999999999999999999999998888889888888777654 267899999998765
No 33
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=95.47 E-value=0.066 Score=65.01 Aligned_cols=70 Identities=10% Similarity=0.065 Sum_probs=56.8
Q ss_pred CCeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccC---HHHHHHHHHHHh
Q 006217 584 EMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAP---AGIIEQALWKIA 653 (656)
Q Consensus 584 e~dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s---~~~IkqAL~~vi 653 (656)
+.-..|+|.++.|+|||.+|.++|.++||+|++|.|+|.++.+.-+|-..-..+..++ ..+|+++|..++
T Consensus 781 ~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l 853 (854)
T PRK01759 781 QEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEERKALKSRLLSNL 853 (854)
T ss_pred CCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence 4457999999999999999999999999999999999999988888887644333343 256777776655
No 34
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.42 E-value=0.074 Score=42.84 Aligned_cols=61 Identities=20% Similarity=0.212 Sum_probs=46.0
Q ss_pred EEEEccCCCChHHHHHHHHHccCCeEEEEEeecC-----CceEEEEEEEEeCCCcccCHHHHHHHHHH
Q 006217 589 IEMRCPSREYILLDIMDAINNLHLDAYSVVSSNL-----DGVLTLALKSTFRGAAIAPAGIIEQALWK 651 (656)
Q Consensus 589 IeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~-----dg~l~~ti~aKv~~~~~~s~~~IkqAL~~ 651 (656)
|.|.++.++|.|.+|+++|.+.+++|.+++.... ++...+.++..+.+ ......|.++|++
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~--~~~l~~l~~~l~~ 66 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRG--AEHIEEIIAALRE 66 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCC--HHHHHHHHHHHHH
Confidence 4678999999999999999999999998887643 46666777777643 2344566666654
No 35
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.32 E-value=0.073 Score=44.17 Aligned_cols=64 Identities=9% Similarity=0.128 Sum_probs=50.5
Q ss_pred EEEEEccCCCChHHHHHHHHHccCCeEEEEEeecC-CceEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 006217 588 LIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNL-DGVLTLALKSTFRGAAIAPAGIIEQALWKI 652 (656)
Q Consensus 588 lIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~-dg~l~~ti~aKv~~~~~~s~~~IkqAL~~v 652 (656)
.|.|.++.++|+|.+|+.+|.+.++++..++.+.. ++...+.|...+.+. ......|.++|+++
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~-~~~l~~l~~~L~~i 66 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTM-NGDIDELLEELREI 66 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCch-HHHHHHHHHHHhcC
Confidence 57889999999999999999999999999887654 577777777776553 13667777777654
No 36
>PRK05092 PII uridylyl-transferase; Provisional
Probab=95.07 E-value=0.11 Score=63.57 Aligned_cols=79 Identities=19% Similarity=0.139 Sum_probs=62.4
Q ss_pred ceEEEEE--eCCeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCc-ccC---HHHHHHHH
Q 006217 576 ADVKVSI--QEMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAA-IAP---AGIIEQAL 649 (656)
Q Consensus 576 ~~VeV~i--~e~dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~-~~s---~~~IkqAL 649 (656)
+.|.+.- .+....|+|.|+.|+|+|.+|..+|.++||+|.+|.++|.++...-+|.+.-.... ..+ ..+|+++|
T Consensus 831 ~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L 910 (931)
T PRK05092 831 PRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRAL 910 (931)
T ss_pred CEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHH
Confidence 4555542 23457899999999999999999999999999999999999999888888653322 222 46788888
Q ss_pred HHHhh
Q 006217 650 WKIAG 654 (656)
Q Consensus 650 ~~vi~ 654 (656)
..++.
T Consensus 911 ~~~L~ 915 (931)
T PRK05092 911 LAALA 915 (931)
T ss_pred HHHhc
Confidence 88774
No 37
>PRK04374 PII uridylyl-transferase; Provisional
Probab=94.76 E-value=0.17 Score=61.60 Aligned_cols=79 Identities=15% Similarity=0.100 Sum_probs=61.5
Q ss_pred ceEEEEE--eCCeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccC---HHHHHHHHH
Q 006217 576 ADVKVSI--QEMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAP---AGIIEQALW 650 (656)
Q Consensus 576 ~~VeV~i--~e~dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s---~~~IkqAL~ 650 (656)
+.|.+.- .+.-..|+|.++.|+|||.+|..+|..++|+|+.|.|+|.++.+.-+|.+.-......+ ..+|+++|.
T Consensus 784 ~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~ 863 (869)
T PRK04374 784 PRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESARQALRDALC 863 (869)
T ss_pred CeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHHHHHHHHHH
Confidence 4455442 23457899999999999999999999999999999999999999988888744322232 367777777
Q ss_pred HHhh
Q 006217 651 KIAG 654 (656)
Q Consensus 651 ~vi~ 654 (656)
.++.
T Consensus 864 ~~l~ 867 (869)
T PRK04374 864 ACLD 867 (869)
T ss_pred HHhc
Confidence 7664
No 38
>PRK04435 hypothetical protein; Provisional
Probab=94.72 E-value=0.14 Score=49.24 Aligned_cols=70 Identities=10% Similarity=0.121 Sum_probs=57.2
Q ss_pred EeCCeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeec-CCceEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 006217 582 IQEMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSN-LDGVLTLALKSTFRGAAIAPAGIIEQALWKI 652 (656)
Q Consensus 582 i~e~dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~-~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~v 652 (656)
..|+.+.|.+.++.++|+|.+|+++|.+.+..|.+++.+. .+|...++|...+.+. .....+|-++|+++
T Consensus 65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~-~~~L~~Li~~L~~i 135 (147)
T PRK04435 65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM-EGDIDELLEKLRNL 135 (147)
T ss_pred CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh-HHHHHHHHHHHHcC
Confidence 4688999999999999999999999999999999988765 4688778888877653 23677777777654
No 39
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=94.63 E-value=0.056 Score=55.92 Aligned_cols=59 Identities=22% Similarity=0.360 Sum_probs=46.6
Q ss_pred ccchhhHHHhhH---HHhHHHHHhc-CCCC-CCCcccchHHHHHHHHHHHHHHHHHHHhccccC
Q 006217 459 CEEHISSDKRTE---NEKFMVLRSM-VPYI-SEVDKASILSDTIKYLKKLEARVEELESCMYSV 517 (656)
Q Consensus 459 ~~~h~~~ER~RR---n~~f~~Lrsl-vP~~-~k~dKaSIL~daI~Yik~L~~~v~~Le~~~~~l 517 (656)
.+.-.+.||||= ||-|.+|+-= .++. ...-|+=||..||+||..||.-++++.+....+
T Consensus 119 RKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~~~ 182 (284)
T KOG3960|consen 119 RKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEKGL 182 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 344468888876 9999999643 3433 667899999999999999999999998766544
No 40
>PRK03381 PII uridylyl-transferase; Provisional
Probab=94.60 E-value=0.17 Score=61.01 Aligned_cols=70 Identities=20% Similarity=0.187 Sum_probs=59.4
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 006217 585 MDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIAG 654 (656)
Q Consensus 585 ~dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 654 (656)
+-+.|.|.|+.|+|++.+|..+|..+|+.|++|++.+.||.+..++.+.-........+.|+++|.+++.
T Consensus 598 ~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~~L~ 667 (774)
T PRK03381 598 HMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLRRALD 667 (774)
T ss_pred CeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHHHHHc
Confidence 4578999999999999999999999999999999999999999998887443333446789999988764
No 41
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=94.60 E-value=0.16 Score=61.70 Aligned_cols=70 Identities=13% Similarity=0.025 Sum_probs=55.4
Q ss_pred CCeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccC---HHHHHHHHHHHh
Q 006217 584 EMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAP---AGIIEQALWKIA 653 (656)
Q Consensus 584 e~dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s---~~~IkqAL~~vi 653 (656)
+.-..|+|.|..|||+|.+|.++|.++|++|.++.++|.++...-.+.+........+ ...|+++|...+
T Consensus 777 ~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l 849 (850)
T TIGR01693 777 RKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASV 849 (850)
T ss_pred CCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence 3457999999999999999999999999999999999998877777777654332333 456666666554
No 42
>PRK03059 PII uridylyl-transferase; Provisional
Probab=94.39 E-value=0.21 Score=60.78 Aligned_cols=68 Identities=10% Similarity=0.126 Sum_probs=56.0
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccC---HHHHHHHHHHHhh
Q 006217 585 MDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAP---AGIIEQALWKIAG 654 (656)
Q Consensus 585 ~dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s---~~~IkqAL~~vi~ 654 (656)
.-..|+|.|+.|+|||.+|..+|..++|+|++|.++|.++.+.-+|.+. +....+ ...|+++|.++|.
T Consensus 785 ~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~--~~~~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 785 QYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLID--GSGLSDNRLQIQLETELLDALA 855 (856)
T ss_pred CEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEc--CCCCCCHHHHHHHHHHHHHHhc
Confidence 4578999999999999999999999999999999999999998888883 222223 4577777777663
No 43
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=94.38 E-value=0.043 Score=56.40 Aligned_cols=56 Identities=18% Similarity=0.315 Sum_probs=46.8
Q ss_pred ccchhhHHHhhH---HHhHHHHHhcCCC----CCCCcccchHHHHHHHHHHHHHHHHHHHhcc
Q 006217 459 CEEHISSDKRTE---NEKFMVLRSMVPY----ISEVDKASILSDTIKYLKKLEARVEELESCM 514 (656)
Q Consensus 459 ~~~h~~~ER~RR---n~~f~~LrslvP~----~~k~dKaSIL~daI~Yik~L~~~v~~Le~~~ 514 (656)
...++..||+|= |..|..||.+||. .+|.-|+-+|.-||.||+.|+.-++.-+...
T Consensus 110 ~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~ 172 (228)
T KOG4029|consen 110 RQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL 172 (228)
T ss_pred hhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence 445667798888 9999999999995 4677899999999999999999888766544
No 44
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=94.06 E-value=0.15 Score=42.78 Aligned_cols=59 Identities=14% Similarity=0.185 Sum_probs=43.5
Q ss_pred EEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHH
Q 006217 588 LIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWK 651 (656)
Q Consensus 588 lIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~ 651 (656)
.|+|.|..|+|+|.+|+.+|.+.+..+.++++... +.+ .+..++.+. .....|-.+|++
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i--~l~i~v~~~--~~L~~li~~L~~ 60 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRI--YLNFPTIEF--EKLQTLMPEIRR 60 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-CeE--EEEeEecCH--HHHHHHHHHHhC
Confidence 47899999999999999999999999999998776 553 344444432 234455555543
No 45
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=93.95 E-value=0.27 Score=59.81 Aligned_cols=70 Identities=13% Similarity=0.048 Sum_probs=57.3
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEee-cCCceEEEEEEEEeCCCcccC----HHHHHHHHHHHhh
Q 006217 585 MDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSS-NLDGVLTLALKSTFRGAAIAP----AGIIEQALWKIAG 654 (656)
Q Consensus 585 ~dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS-~~dg~l~~ti~aKv~~~~~~s----~~~IkqAL~~vi~ 654 (656)
.-..|.|.++.|+|+|.+|..+|..+||+|++|++. +.+|.+.-+|.++-....... ...|+++|.+++.
T Consensus 667 ~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~ 741 (850)
T TIGR01693 667 GGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLA 741 (850)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHc
Confidence 456899999999999999999999999999999998 779998888888755433232 4457778877764
No 46
>PRK03381 PII uridylyl-transferase; Provisional
Probab=93.88 E-value=0.34 Score=58.36 Aligned_cols=66 Identities=14% Similarity=0.087 Sum_probs=53.1
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 006217 585 MDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKI 652 (656)
Q Consensus 585 ~dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~v 652 (656)
.-..|+|.|+.|+|+|.+|..+|..++|+|++|.++|.++.+.-++.+.-.+....+- + .++|++.
T Consensus 706 ~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~~-~-~~~l~~~ 771 (774)
T PRK03381 706 DATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLAD-A-RAAVEQA 771 (774)
T ss_pred CeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCch-H-HHHHHHH
Confidence 3579999999999999999999999999999999999999999998887544333332 2 4455443
No 47
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=93.64 E-value=0.39 Score=58.51 Aligned_cols=79 Identities=20% Similarity=0.161 Sum_probs=60.1
Q ss_pred ceEEEEE--eCCeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeec-CCceEEEEEEEEeCCCcccCH---HHHHHHH
Q 006217 576 ADVKVSI--QEMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSN-LDGVLTLALKSTFRGAAIAPA---GIIEQAL 649 (656)
Q Consensus 576 ~~VeV~i--~e~dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~-~dg~l~~ti~aKv~~~~~~s~---~~IkqAL 649 (656)
+-|.|.- ...-..|.|.|+.|+|+|.+|..+|..+||+|++|++.+ .+|.+.-++.+.-.+....+. ..|+++|
T Consensus 665 ~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L 744 (854)
T PRK01759 665 LLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQAL 744 (854)
T ss_pred CEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHH
Confidence 4455432 334568999999999999999999999999999999876 899998888886443333333 3577777
Q ss_pred HHHhh
Q 006217 650 WKIAG 654 (656)
Q Consensus 650 ~~vi~ 654 (656)
.+++.
T Consensus 745 ~~aL~ 749 (854)
T PRK01759 745 TKALN 749 (854)
T ss_pred HHHHc
Confidence 77664
No 48
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=93.35 E-value=0.33 Score=37.52 Aligned_cols=61 Identities=25% Similarity=0.284 Sum_probs=44.9
Q ss_pred EEEEccCCCChHHHHHHHHHccCCeEEEEEeecCC-ceEEEEEEEEeCCCcccCHHHHHHHHHH
Q 006217 589 IEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLD-GVLTLALKSTFRGAAIAPAGIIEQALWK 651 (656)
Q Consensus 589 IeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~d-g~l~~ti~aKv~~~~~~s~~~IkqAL~~ 651 (656)
|++.|+.++|.+.+|++.|.+.++++.++.....+ +...+.+..++... .....+.++|.+
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~ 62 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRDL--EHLARIMRKLRQ 62 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECCH--HHHHHHHHHHhC
Confidence 57889999999999999999999999998876654 55555666655432 345555665553
No 49
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=93.00 E-value=0.062 Score=64.38 Aligned_cols=64 Identities=23% Similarity=0.383 Sum_probs=55.9
Q ss_pred CcccccchhhHHHhhH---HHhHHHHHhcCCCC-CCCcccchHHHHHHHHHHHHHHHHHHHhccccCC
Q 006217 455 SDNFCEEHISSDKRTE---NEKFMVLRSMVPYI-SEVDKASILSDTIKYLKKLEARVEELESCMYSVD 518 (656)
Q Consensus 455 ~~~~~~~h~~~ER~RR---n~~f~~LrslvP~~-~k~dKaSIL~daI~Yik~L~~~v~~Le~~~~~l~ 518 (656)
+.+...+|++.|||=| |++...||-+||.. .|..|.++|.-||+||++|+..-+.|......+.
T Consensus 273 G~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 273 GGEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred CCcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence 3567889999999999 99999999999975 8899999999999999999988887776665444
No 50
>PRK05007 PII uridylyl-transferase; Provisional
Probab=92.92 E-value=0.6 Score=57.11 Aligned_cols=70 Identities=14% Similarity=0.130 Sum_probs=55.6
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeec-CCceEEEEEEEEeCCCcccCH---HHHHHHHHHHhh
Q 006217 585 MDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSN-LDGVLTLALKSTFRGAAIAPA---GIIEQALWKIAG 654 (656)
Q Consensus 585 ~dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~-~dg~l~~ti~aKv~~~~~~s~---~~IkqAL~~vi~ 654 (656)
....|.|.|+.++|+|.+|..+|..++|+|++|++.+ .||.+.-++.+.-.++...+. ..|+++|.+++.
T Consensus 700 ~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L~~aL~ 773 (884)
T PRK05007 700 GGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKALEQALT 773 (884)
T ss_pred CeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999999999999775 577988888876443333333 347888877764
No 51
>PLN03217 transcription factor ATBS1; Provisional
Probab=92.70 E-value=0.13 Score=44.95 Aligned_cols=48 Identities=27% Similarity=0.529 Sum_probs=40.3
Q ss_pred HHhHHHHHhcCCCCC---CCcccc---hHHHHHHHHHHHHHHHHHHHhccccCC
Q 006217 471 NEKFMVLRSMVPYIS---EVDKAS---ILSDTIKYLKKLEARVEELESCMYSVD 518 (656)
Q Consensus 471 n~~f~~LrslvP~~~---k~dKaS---IL~daI~Yik~L~~~v~~Le~~~~~l~ 518 (656)
++....|+.|+|... ..+|+| +|.||-+||+.|++.|..|..+..++.
T Consensus 23 ~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL 76 (93)
T PLN03217 23 NDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELL 76 (93)
T ss_pred HHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999752 235666 799999999999999999999887654
No 52
>PRK03059 PII uridylyl-transferase; Provisional
Probab=92.56 E-value=0.62 Score=56.81 Aligned_cols=70 Identities=7% Similarity=0.062 Sum_probs=56.4
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEe-ecCCceEEEEEEEEeCCCccc---CHHHHHHHHHHHhh
Q 006217 585 MDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVS-SNLDGVLTLALKSTFRGAAIA---PAGIIEQALWKIAG 654 (656)
Q Consensus 585 ~dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqs-S~~dg~l~~ti~aKv~~~~~~---s~~~IkqAL~~vi~ 654 (656)
+...|-|.|+.|+|+|.+|..+|..+||+|+.|++ ++.||+++-++.+.-.+.... -.+.|+++|.+++.
T Consensus 677 ~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~~~i~~~l~~~l~ 750 (856)
T PRK03059 677 EGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEEDVHYRDIINLVEHELAERLA 750 (856)
T ss_pred CeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCCCChHHHHHHHHHHHHHHHc
Confidence 45689999999999999999999999999999999 568999999998874433211 25567777777664
No 53
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=92.48 E-value=0.52 Score=34.38 Aligned_cols=35 Identities=11% Similarity=0.268 Sum_probs=30.9
Q ss_pred EEEEccCCCChHHHHHHHHHccCCeEEEEEeecCC
Q 006217 589 IEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLD 623 (656)
Q Consensus 589 IeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~d 623 (656)
|.+.|+.++|.+.+|+++|...++.+..+..+..+
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 57889999999999999999999999998876543
No 54
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=92.40 E-value=0.59 Score=57.24 Aligned_cols=70 Identities=10% Similarity=0.016 Sum_probs=56.1
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEe-ecCCceEEEEEEEEeCCCcc-c----CHHHHHHHHHHHhh
Q 006217 585 MDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVS-SNLDGVLTLALKSTFRGAAI-A----PAGIIEQALWKIAG 654 (656)
Q Consensus 585 ~dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqs-S~~dg~l~~ti~aKv~~~~~-~----s~~~IkqAL~~vi~ 654 (656)
+-..|.|.|+.++|+|++|..+|..+||+|+.|++ ++.||+++-++.+.-.+... . -.+.|+++|.+++.
T Consensus 703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~ 778 (895)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALR 778 (895)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHc
Confidence 45689999999999999999999999999999997 67789988888887544332 1 23457788877764
No 55
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.01 E-value=1.1 Score=36.06 Aligned_cols=60 Identities=10% Similarity=0.094 Sum_probs=44.3
Q ss_pred EEEEEccCCCChHHHHHHHHHccCCeEEEEEeecC-CceEEEEEEEEeCCCcccCHHHHHHHHHH
Q 006217 588 LIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNL-DGVLTLALKSTFRGAAIAPAGIIEQALWK 651 (656)
Q Consensus 588 lIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~-dg~l~~ti~aKv~~~~~~s~~~IkqAL~~ 651 (656)
.|.+.|+.++|.|.+|+..|.+.++.+.++..... ++...+.+ .+++. .....+.++|++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i--~~~~~--~~~~~~~~~L~~ 62 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYM--ELEGV--GDIEELVEELRS 62 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEE--EEecc--ccHHHHHHHHhC
Confidence 47789999999999999999999999998887765 35544444 34332 355566666654
No 56
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=91.85 E-value=1 Score=48.06 Aligned_cols=69 Identities=12% Similarity=0.124 Sum_probs=57.6
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeec--CCceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 006217 585 MDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSN--LDGVLTLALKSTFRGAAIAPAGIIEQALWKIAG 654 (656)
Q Consensus 585 ~dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~--~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 654 (656)
..+.|.+.|+.|+|+..+|-++|.++|+.+...+.++ ..|.|...+.+.+... ..+..+++++|..+-.
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~-~~~~~~L~~~L~~l~~ 75 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGL-IFNLETLRADFAALAE 75 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCC-CCCHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999988 8888777777766322 3568899999987643
No 57
>PRK08577 hypothetical protein; Provisional
Probab=91.66 E-value=1.2 Score=42.12 Aligned_cols=67 Identities=16% Similarity=0.137 Sum_probs=53.0
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecC--CceEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 006217 585 MDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNL--DGVLTLALKSTFRGAAIAPAGIIEQALWKI 652 (656)
Q Consensus 585 ~dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~--dg~l~~ti~aKv~~~~~~s~~~IkqAL~~v 652 (656)
+.+.|.|.+..++|+|.+|++.|.+.++++.++++.+. ++++...+...+.+. .....++.+.|+++
T Consensus 55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~-~~~l~~l~~~L~~l 123 (136)
T PRK08577 55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKS-DIDLEELEEELKKL 123 (136)
T ss_pred cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCc-hhhHHHHHHHHHcC
Confidence 47889999999999999999999999999998876653 566777777777653 14567777777653
No 58
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.51 E-value=0.65 Score=55.47 Aligned_cols=77 Identities=14% Similarity=0.116 Sum_probs=58.4
Q ss_pred ceEEEEE--eCCeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 006217 576 ADVKVSI--QEMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIA 653 (656)
Q Consensus 576 ~~VeV~i--~e~dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 653 (656)
|.|++.- ..+--.||+.+..|+|+|.+|-.+|.+++|++++|.|+|.+..+.-+|.........+ -.+++++|.+.+
T Consensus 779 p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~l-~~~~~q~l~~~l 857 (867)
T COG2844 779 PRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQAL-NAELRQSLLQRL 857 (867)
T ss_pred CceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccccccC-CHHHHHHHHHHH
Confidence 5566552 3345789999999999999999999999999999999999987666666554443334 346677766554
No 59
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.42 E-value=0.7 Score=37.66 Aligned_cols=47 Identities=9% Similarity=0.145 Sum_probs=38.3
Q ss_pred EEEEEccCCCChHHHHHHHHHccCCeEEEEEeecC-C-ceEEEEEEEEe
Q 006217 588 LIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNL-D-GVLTLALKSTF 634 (656)
Q Consensus 588 lIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~-d-g~l~~ti~aKv 634 (656)
.|+|.+..++|+|.+|+..|.+.++.+..++.... + +...+.+..++
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~ 50 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE 50 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc
Confidence 68999999999999999999999999999877653 3 65555555543
No 60
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=91.39 E-value=1 Score=48.08 Aligned_cols=67 Identities=13% Similarity=0.162 Sum_probs=53.1
Q ss_pred eEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeec--CCceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 006217 586 DVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSN--LDGVLTLALKSTFRGAAIAPAGIIEQALWKIAG 654 (656)
Q Consensus 586 dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~--~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 654 (656)
.+.|.|.|+.|+|+..+|-+.|-++++++...+..+ .+++|...+.+.+.. ..+..+++++|..+..
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~--~~~~~~L~~~L~~l~~ 75 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEE--GLDEDALRAGFAPIAA 75 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCC--CCCHHHHHHHHHHHHH
Confidence 467999999999999999999999999999988863 456666544444333 4679999999987643
No 61
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=91.30 E-value=0.95 Score=35.96 Aligned_cols=59 Identities=5% Similarity=0.065 Sum_probs=46.2
Q ss_pred EEEEccCCCChHHHHHHHHHccCCeEEEEEeecCC--ceEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 006217 589 IEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLD--GVLTLALKSTFRGAAIAPAGIIEQALWKI 652 (656)
Q Consensus 589 IeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~d--g~l~~ti~aKv~~~~~~s~~~IkqAL~~v 652 (656)
|.|.++.++|+|.+|+..|.+.++.+.++++.... +...+.+.. ++ .....+.+.|+++
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v--~~---~~~~~l~~~l~~~ 62 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV--DS---PVPEEVLEELKAL 62 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc--CC---CCCHHHHHHHHcC
Confidence 67889999999999999999999999999887753 676666655 22 1356777777654
No 62
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=91.25 E-value=1.1 Score=35.69 Aligned_cols=61 Identities=11% Similarity=0.044 Sum_probs=44.8
Q ss_pred EEEEEccCCCChHHHHHHHHHccCCeEEEEEeecC--CceEEEEEEEEeCCCcccCHHHHHHHHHH
Q 006217 588 LIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNL--DGVLTLALKSTFRGAAIAPAGIIEQALWK 651 (656)
Q Consensus 588 lIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~--dg~l~~ti~aKv~~~~~~s~~~IkqAL~~ 651 (656)
.|.+.+..++|+|.+|+..|.+.++.+.++..... ++...+.+..++. . .....+..+|++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~l~~~l~~ 64 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGD--D-DVIEQIVKQLNK 64 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECC--H-HHHHHHHHHHhC
Confidence 47788899999999999999999999999887753 5666666666642 2 334455555543
No 63
>PRK05092 PII uridylyl-transferase; Provisional
Probab=91.15 E-value=1.2 Score=54.74 Aligned_cols=69 Identities=7% Similarity=-0.132 Sum_probs=55.9
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeec-CCceEEEEEEEEeCCCcc-c---CHHHHHHHHHHHh
Q 006217 585 MDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSN-LDGVLTLALKSTFRGAAI-A---PAGIIEQALWKIA 653 (656)
Q Consensus 585 ~dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~-~dg~l~~ti~aKv~~~~~-~---s~~~IkqAL~~vi 653 (656)
+...|.|.|+.|+|+|.+|..+|..+|++|+.+++.+ .||+...+|.+.-..... . -...|.++|.+++
T Consensus 731 ~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l 804 (931)
T PRK05092 731 GVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAKAIEDAL 804 (931)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999876 788888888876543221 1 3566788887776
No 64
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=90.19 E-value=1.8 Score=46.16 Aligned_cols=63 Identities=13% Similarity=0.155 Sum_probs=52.5
Q ss_pred EEEEEccCCCChHHHHHHHHHccCCeEEEEEeecC--CceEEEEEEEEeCCCcccCHHHHHHHHHH
Q 006217 588 LIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNL--DGVLTLALKSTFRGAAIAPAGIIEQALWK 651 (656)
Q Consensus 588 lIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~--dg~l~~ti~aKv~~~~~~s~~~IkqAL~~ 651 (656)
.|.+.|+.|+|+...|-..|-+.|..++.++.... .|.|...+.+.+.+. ..+..+++++|..
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~-~~~~~~l~~~l~~ 66 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGF-RLEESSLLAAFKS 66 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCC-CCCHHHHHHHHHH
Confidence 47899999999999999999999999999988874 477776666665432 3688999999988
No 65
>PRK07334 threonine dehydratase; Provisional
Probab=90.17 E-value=1.1 Score=49.92 Aligned_cols=65 Identities=18% Similarity=0.062 Sum_probs=51.7
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecC-----CceEEEEEEEEeCCCcccCHHHHHHHHHH
Q 006217 585 MDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNL-----DGVLTLALKSTFRGAAIAPAGIIEQALWK 651 (656)
Q Consensus 585 ~dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~-----dg~l~~ti~aKv~~~~~~s~~~IkqAL~~ 651 (656)
-.+.|+|.+..|+|+|.+|+.+|.+.++.|.++++... ++...+.|..+|++. .....|.+.|++
T Consensus 325 y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~--~~L~~vi~~Lr~ 394 (403)
T PRK07334 325 RLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDA--AHLQEVIAALRA 394 (403)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCH--HHHHHHHHHHHH
Confidence 35889999999999999999999999999999998754 678777888877653 344455555554
No 66
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=89.96 E-value=1.9 Score=36.05 Aligned_cols=62 Identities=8% Similarity=0.032 Sum_probs=41.4
Q ss_pred EEEccCCCChHHHHHHHHHccCCeEEEEEeecCCc-eEEEEEEEEeCCC-cccCHHHHHHHHHH
Q 006217 590 EMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDG-VLTLALKSTFRGA-AIAPAGIIEQALWK 651 (656)
Q Consensus 590 eI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg-~l~~ti~aKv~~~-~~~s~~~IkqAL~~ 651 (656)
-+..+.++|.|.+|++.+.+.|+.++++++....+ .-.+.+...+.+. .......+...|++
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 34557899999999999999999999998875443 3344444554442 12344445555544
No 67
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=89.59 E-value=3.1 Score=35.28 Aligned_cols=63 Identities=16% Similarity=0.232 Sum_probs=45.2
Q ss_pred EEEEEccCCCChHHHHHHHHHccCCeEEEEEeecC-CceEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 006217 588 LIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNL-DGVLTLALKSTFRGAAIAPAGIIEQALWKI 652 (656)
Q Consensus 588 lIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~-dg~l~~ti~aKv~~~~~~s~~~IkqAL~~v 652 (656)
.|.+.-+.++|.|.+|++.|.++++.++++.+... ++.-.+.+++.+.+. .....++++|..+
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~--~~~~~~~~~l~~l 66 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH--IEDPNVAEALEEL 66 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC--CCCHHHHHHHHHH
Confidence 45566678999999999999999999999876654 344556777776653 3345555555443
No 68
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.45 E-value=1.5 Score=34.94 Aligned_cols=58 Identities=3% Similarity=0.018 Sum_probs=42.5
Q ss_pred EEEEccCCCChHHHHHHHHHccCCeEEEEEeec--CCceEEEEEEEEeCCCcccCHHHHHHHHHH
Q 006217 589 IEMRCPSREYILLDIMDAINNLHLDAYSVVSSN--LDGVLTLALKSTFRGAAIAPAGIIEQALWK 651 (656)
Q Consensus 589 IeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~--~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~ 651 (656)
|.+.++.++|.|.+|...|.+.++.+.++.... .++...+.|+ +++. ....+.++|++
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~--v~~~---~~~~~i~~l~~ 61 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIE--VDQP---IDEEVIEEIKK 61 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEE--eCCC---CCHHHHHHHHc
Confidence 678899999999999999999999999887665 2455444443 3332 45566666664
No 69
>PRK04374 PII uridylyl-transferase; Provisional
Probab=89.12 E-value=1.7 Score=53.13 Aligned_cols=70 Identities=7% Similarity=0.039 Sum_probs=56.0
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeec-CCceEEEEEEEEeCCCc-ccCHHHHHHHHHHHhh
Q 006217 585 MDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSN-LDGVLTLALKSTFRGAA-IAPAGIIEQALWKIAG 654 (656)
Q Consensus 585 ~dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~-~dg~l~~ti~aKv~~~~-~~s~~~IkqAL~~vi~ 654 (656)
+-..|-|.|+.++|+|++|..+|..+||.|+.|++.+ .||+++-++.+.-.... ......|.++|.+++.
T Consensus 689 ~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~l~ 760 (869)
T PRK04374 689 DALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQVLA 760 (869)
T ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHHHHc
Confidence 4568899999999999999999999999999999976 79999999988643322 2234557777777664
No 70
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=88.47 E-value=2.2 Score=45.63 Aligned_cols=68 Identities=13% Similarity=0.180 Sum_probs=49.6
Q ss_pred eEEEEEEccCCCChHHHHHHHHHccCCeEEEEEee--cCCceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 006217 586 DVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSS--NLDGVLTLALKSTFRGAAIAPAGIIEQALWKIA 653 (656)
Q Consensus 586 dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS--~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 653 (656)
.+.|.|.|+.|+|+..+|-..|-+.|+.++.++-. +..+.|+.-+..........+..+++++|..+.
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l~ 78 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQPVA 78 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999999999999998874 233333323222222223478899999998754
No 71
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.19 E-value=3.5 Score=34.53 Aligned_cols=65 Identities=14% Similarity=0.120 Sum_probs=50.5
Q ss_pred EEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCC-cccCHHHHHHHHHHH
Q 006217 588 LIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGA-AIAPAGIIEQALWKI 652 (656)
Q Consensus 588 lIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~-~~~s~~~IkqAL~~v 652 (656)
.|.|.||.+.||-.+|...+-++||.|+...+|+.+.--++.+-+.-+.. ..+.-.-+|+.|..+
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~ 67 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMSA 67 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHhc
Confidence 58899999999999999999999999999999998876666665553332 134556777777553
No 72
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.75 E-value=3.7 Score=33.95 Aligned_cols=62 Identities=11% Similarity=0.134 Sum_probs=43.5
Q ss_pred EEEEccCCCChHHHHHHHHHccCCeEEEEEeecC---CceEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 006217 589 IEMRCPSREYILLDIMDAINNLHLDAYSVVSSNL---DGVLTLALKSTFRGAAIAPAGIIEQALWKI 652 (656)
Q Consensus 589 IeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~---dg~l~~ti~aKv~~~~~~s~~~IkqAL~~v 652 (656)
+.+.=+.+||.|.+|++.|.+.|..|+++..... .+.-...++..+... -....|.++|.+.
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~--~~~~~i~~~L~~~ 66 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDR--SKENELIEELKAK 66 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecc--hHHHHHHHHHhCc
Confidence 4566789999999999999999999998866543 344445555544221 1266777777543
No 73
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=85.96 E-value=5.4 Score=32.48 Aligned_cols=56 Identities=7% Similarity=0.061 Sum_probs=41.1
Q ss_pred EEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHH
Q 006217 588 LIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALW 650 (656)
Q Consensus 588 lIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~ 650 (656)
.|.|..+.++|.|.+|+++|.+.|+.|.++-+....+. ..++.++.. .+.+.+.|.
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~~~-----~~~~~~~L~ 58 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIVSD-----PDKAKEALK 58 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEECC-----HHHHHHHHH
Confidence 46778899999999999999999999998876655442 455555532 345555554
No 74
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A ....
Probab=85.71 E-value=1 Score=40.88 Aligned_cols=62 Identities=27% Similarity=0.360 Sum_probs=41.5
Q ss_pred CccceeeeCCCcEEeeCCCcCCCcchhhHHhhhhcCCcEEEEeeeC-C----eEEEecccccccCChhHHH
Q 006217 127 GLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHL-D----GVIELGVTELVPEDPSLLQ 192 (656)
Q Consensus 127 GlpGra~~~g~~~Wl~~~~~~~~~~~~R~~la~sagIQTvvciP~~-~----GVvELGSt~~v~Ed~~lv~ 192 (656)
|+.+.++.+++++|+. .+...+.........||+.++|||+. + |||.|++.+.-.=+..-+.
T Consensus 68 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~f~~~~~~ 134 (148)
T PF13185_consen 68 GLWEGVLRTGEPIIIN----DDDSSFPPWELARHPGIRSILCVPLRSGGEVIGVLSLYSKEPNAFSEEDLE 134 (148)
T ss_dssp ETTSHHHHHTS-EEES----CCCGGGSTTHHHCCTT-SEEEEEEEEETTEEEEEEEEEESSTT---HHHHH
T ss_pred hHHHHHHhcCceEEEe----CccccccchhhhccccCCEEEEEEEeECCEEEEEEEEeeCCCCCcCHHHHH
Confidence 5556669999999999 22233334688889999999999986 2 9999999776333333333
No 75
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.88 E-value=3.9 Score=32.46 Aligned_cols=56 Identities=11% Similarity=0.130 Sum_probs=40.2
Q ss_pred EEEEccCCCChHHHHHHHHHccCCeEEEEEeecCC--ceEEEEEEEEeCCCcccCHHHHHHHHHH
Q 006217 589 IEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLD--GVLTLALKSTFRGAAIAPAGIIEQALWK 651 (656)
Q Consensus 589 IeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~d--g~l~~ti~aKv~~~~~~s~~~IkqAL~~ 651 (656)
|.|.=+.++|.|.+|++.|.+.++.|.++..+... +...+.++.. . ...+.+.|.+
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve--~-----~~~~~~~L~~ 59 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTE--D-----IEKAIEVLQE 59 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeC--C-----HHHHHHHHHH
Confidence 56777899999999999999999999877654433 4444444442 2 5567776654
No 76
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.96 E-value=5 Score=32.66 Aligned_cols=34 Identities=3% Similarity=0.136 Sum_probs=29.8
Q ss_pred EEEEEccCCCChHHHHHHHHHccCCeEEEEEeec
Q 006217 588 LIEMRCPSREYILLDIMDAINNLHLDAYSVVSSN 621 (656)
Q Consensus 588 lIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~ 621 (656)
-+.+.++.++|.|.+|...|.+.++.+..+....
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~ 36 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILE 36 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEE
Confidence 4778899999999999999999999998876544
No 77
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=82.46 E-value=9.7 Score=32.08 Aligned_cols=60 Identities=7% Similarity=0.002 Sum_probs=41.3
Q ss_pred EEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCc-eEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 006217 589 IEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDG-VLTLALKSTFRGAAIAPAGIIEQALWKI 652 (656)
Q Consensus 589 IeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg-~l~~ti~aKv~~~~~~s~~~IkqAL~~v 652 (656)
|-+..++++|-|.+|+..+...++.+++..+--..+ ..-+.+-..+.+. ...++++|..+
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~----~~~~~~~l~~L 63 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVD----RGDLDQLISSL 63 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcC----hHHHHHHHHHH
Confidence 334557899999999999999999999999865432 2344555555441 23466666554
No 78
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=82.26 E-value=1.5 Score=35.45 Aligned_cols=58 Identities=9% Similarity=-0.036 Sum_probs=41.6
Q ss_pred EEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHH
Q 006217 589 IEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWK 651 (656)
Q Consensus 589 IeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~ 651 (656)
|-+.+..++|+|.+|+..|.+.+..+........++.....+...+. ...++-+.|++
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~-----~l~~li~~l~~ 59 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE-----VSEELLEALRA 59 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC-----CCHHHHHHHHc
Confidence 34578899999999999999999999877665555666555554433 44466666654
No 79
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.93 E-value=11 Score=30.66 Aligned_cols=59 Identities=22% Similarity=0.211 Sum_probs=43.5
Q ss_pred EEEEEccCCCChHHHHHHHHHccCCeEEEEEeec--CCceEEEEEEEEeCCCcccCHHHHHHHHHH
Q 006217 588 LIEMRCPSREYILLDIMDAINNLHLDAYSVVSSN--LDGVLTLALKSTFRGAAIAPAGIIEQALWK 651 (656)
Q Consensus 588 lIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~--~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~ 651 (656)
.|.+..+.++|.|.+|++.|.+.++.+.++.... .++.-.+.|+.... .+.+++++|.+
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~-----~~~~~~~~L~~ 63 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTM-----NPRPIIEDLRR 63 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecC-----CHHHHHHHHHH
Confidence 5778899999999999999999999998875443 24555566666532 23477777764
No 80
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=81.13 E-value=4.6 Score=48.58 Aligned_cols=65 Identities=15% Similarity=0.221 Sum_probs=52.1
Q ss_pred eEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecC--CceEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 006217 586 DVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNL--DGVLTLALKSTFRGAAIAPAGIIEQALWKI 652 (656)
Q Consensus 586 dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~--dg~l~~ti~aKv~~~~~~s~~~IkqAL~~v 652 (656)
.|.|+|.+..|+|+|.+|..+|.+.++.|.++++... +++....|..+|++. .....|-.+|+++
T Consensus 666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~--~~L~~l~~~L~~i 732 (743)
T PRK10872 666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNL--QVLGRVLGKLNQV 732 (743)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCH--HHHHHHHHHHhcC
Confidence 4689999999999999999999999999999998764 688888888888763 3444555555543
No 81
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=80.98 E-value=4.9 Score=31.43 Aligned_cols=44 Identities=7% Similarity=0.070 Sum_probs=34.9
Q ss_pred EEEEccCCCChHHHHHHHHHccCCeEEEEEeecCC-ceEEEEEEE
Q 006217 589 IEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLD-GVLTLALKS 632 (656)
Q Consensus 589 IeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~d-g~l~~ti~a 632 (656)
|.+.++.++|.|.+|.++|.+.++.+.++.+...+ +.-.+.|..
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v 45 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIF 45 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEE
Confidence 46788999999999999999999999998877655 444444443
No 82
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=80.69 E-value=5.7 Score=32.79 Aligned_cols=56 Identities=11% Similarity=0.064 Sum_probs=43.0
Q ss_pred CCCChHHHHHHHHHccCCeEEEEEeec--CCceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 006217 595 SREYILLDIMDAINNLHLDAYSVVSSN--LDGVLTLALKSTFRGAAIAPAGIIEQALWKIA 653 (656)
Q Consensus 595 ~r~glL~~Im~aL~~L~LdV~svqsS~--~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 653 (656)
.++|.|.+|+..+..-|..+.+.+++. .+++..++|.++-.+ -.++.|.+.|.|++
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~---~~i~~l~~Ql~Kli 58 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDD---REIEQLVKQLEKLI 58 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-C---CHHHHHHHHHHCST
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCc---hhHHHHHHHHhccC
Confidence 468999999999999988888877776 778888888776322 46777777777765
No 83
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=79.97 E-value=2.3 Score=48.92 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=52.5
Q ss_pred eecCCCCccceeeeCCCcEEeeCCCcCCCcchhhHHhhhhcCCcEEEEeeeC-----CeEEEeccccc----ccCChhHH
Q 006217 121 VFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHL-----DGVIELGVTEL----VPEDPSLL 191 (656)
Q Consensus 121 sF~~G~GlpGra~~~g~~~Wl~~~~~~~~~~~~R~~la~sagIQTvvciP~~-----~GVvELGSt~~----v~Ed~~lv 191 (656)
.|..|+|+.|+++.+++++++.+....+ .|....-....|++.++|||+. -|||.+.+... -.+|.+|+
T Consensus 68 ~~~~~~gi~g~v~~~~~pvii~Dv~~d~--~~~~~~~~~~~~~~S~l~VPL~~~g~viGvL~v~s~~~~~~ft~~d~~lL 145 (534)
T TIGR01817 68 RYRVGEGAIGQIVATGNSLVVPDVAAEP--LFLDRLSLYDPGPVPFIGVPIKADSETIGVLAADRDFRSRERLEEEVRFL 145 (534)
T ss_pred cccCCccHHHHHHhcCCeEEecccccCc--hhhhccccccCCcceEEEEEEcCCCEEEEEEEEEeccccccccHHHHHHH
Confidence 4567899999999999999999875322 1211111345689999999995 38999998754 33455566
Q ss_pred HHHHHHh
Q 006217 192 QHIKASL 198 (656)
Q Consensus 192 ~~ik~~F 198 (656)
..+-...
T Consensus 146 ~~lA~~i 152 (534)
T TIGR01817 146 EMVANLI 152 (534)
T ss_pred HHHHHHH
Confidence 5554443
No 84
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.41 E-value=14 Score=32.78 Aligned_cols=50 Identities=4% Similarity=-0.040 Sum_probs=35.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecC-CceEEEEEEEEeCC
Q 006217 587 VLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNL-DGVLTLALKSTFRG 636 (656)
Q Consensus 587 vlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~-dg~l~~ti~aKv~~ 636 (656)
..|-+..+.++|.|.+|+..+...++.+++..+--. +..--+.+-..+.+
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg 65 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDK 65 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEc
Confidence 345556688999999999999999999999988653 22223444444444
No 85
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=78.02 E-value=6.1 Score=47.38 Aligned_cols=64 Identities=17% Similarity=0.107 Sum_probs=51.2
Q ss_pred eEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCC-ceEEEEEEEEeCCCcccCHHHHHHHHHH
Q 006217 586 DVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLD-GVLTLALKSTFRGAAIAPAGIIEQALWK 651 (656)
Q Consensus 586 dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~d-g~l~~ti~aKv~~~~~~s~~~IkqAL~~ 651 (656)
.+.|+|.+.+|+|+|.+|+.+|.+.++.|.++++...+ +++.+.|..+|++. .....|-.+|++
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~--~~L~~i~~~Lr~ 690 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARDR--VHLANIMRKIRV 690 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECCH--HHHHHHHHHHhC
Confidence 46899999999999999999999999999999987764 67788888888763 344455555543
No 86
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=77.71 E-value=6.3 Score=47.12 Aligned_cols=64 Identities=16% Similarity=0.106 Sum_probs=51.3
Q ss_pred eEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecC-CceEEEEEEEEeCCCcccCHHHHHHHHHH
Q 006217 586 DVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNL-DGVLTLALKSTFRGAAIAPAGIIEQALWK 651 (656)
Q Consensus 586 dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~-dg~l~~ti~aKv~~~~~~s~~~IkqAL~~ 651 (656)
.+.|+|.+.+|+|+|.+|+.+|.+.+..|.++++... ++++.+.|..+|++. .....|-.+|++
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~--~~L~~ii~~L~~ 674 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKNY--KHLLKIMLKIKT 674 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECCH--HHHHHHHHHHhC
Confidence 4689999999999999999999999999999998776 588888888888763 334444444443
No 87
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=77.57 E-value=2.1 Score=48.95 Aligned_cols=40 Identities=33% Similarity=0.580 Sum_probs=33.3
Q ss_pred hhHHHhhH--HHhHHHHHhcCCC----CCCCcccchHHHHHHHHHH
Q 006217 463 ISSDKRTE--NEKFMVLRSMVPY----ISEVDKASILSDTIKYLKK 502 (656)
Q Consensus 463 ~~~ER~RR--n~~f~~LrslvP~----~~k~dKaSIL~daI~Yik~ 502 (656)
+.+-|.|- |..+..|.||||+ ++|.||.|||.=++.|++-
T Consensus 31 NPSKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr~ 76 (712)
T KOG3560|consen 31 NPSKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLRV 76 (712)
T ss_pred CcchhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHHH
Confidence 34444444 9999999999997 5999999999999999863
No 88
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=77.53 E-value=5.2 Score=35.76 Aligned_cols=66 Identities=11% Similarity=0.178 Sum_probs=54.3
Q ss_pred EEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 006217 587 VLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIA 653 (656)
Q Consensus 587 vlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 653 (656)
++|.|.-..|+|+-..|..+|-++++.++.+.=+..+|+|..-+.+..... ..+...++..|....
T Consensus 4 avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~~-~~d~~~lr~~l~~~~ 69 (90)
T COG3830 4 AVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISKE-VVDFAALRDELAAEG 69 (90)
T ss_pred EEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCChH-hccHHHHHHHHHHHH
Confidence 678888889999999999999999999998888889999988777766543 467777777776544
No 89
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=77.37 E-value=7 Score=39.43 Aligned_cols=66 Identities=14% Similarity=0.016 Sum_probs=54.3
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 006217 585 MDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIA 653 (656)
Q Consensus 585 ~dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 653 (656)
..+.|.+.++.|+|+...|-++|.+.|..+...+.+..+|.|...+.+... ...+..++.+|..+-
T Consensus 7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~---~~~~~~le~~L~~l~ 72 (190)
T PRK11589 7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGS---WNAITLIESTLPLKG 72 (190)
T ss_pred cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCC---hhHHHHHHHHHHhhh
Confidence 457899999999999999999999999999999999999988777766432 246778888776543
No 90
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=75.87 E-value=8.7 Score=31.15 Aligned_cols=59 Identities=8% Similarity=0.092 Sum_probs=43.1
Q ss_pred EEEEccCCCChHHHHHHHHHccCCeEEEEEeec--CCceEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 006217 589 IEMRCPSREYILLDIMDAINNLHLDAYSVVSSN--LDGVLTLALKSTFRGAAIAPAGIIEQALWKI 652 (656)
Q Consensus 589 IeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~--~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~v 652 (656)
+-+..+.++|.+.+|.+.|.+.|+.+.++.+.. .++...+.++.+. ..+.++.++|+++
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~-----~~~~~~~~~l~~~ 62 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE-----PVPDEVLEELRAL 62 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC-----CCCHHHHHHHHcC
Confidence 345789999999999999999999998887655 3466666666543 1234676766643
No 91
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=74.84 E-value=12 Score=36.73 Aligned_cols=63 Identities=8% Similarity=0.038 Sum_probs=50.2
Q ss_pred EEEEEccCCCChHHHHHHHHHccCCeEEEEEeecC--CceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 006217 588 LIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNL--DGVLTLALKSTFRGAAIAPAGIIEQALWKIA 653 (656)
Q Consensus 588 lIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~--dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 653 (656)
.|.|.-+.++|.|.+|...|...|+.+.+..+... ++...++|++.- + ...+..|...|+|++
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~-d--~~~i~qi~kQl~Kli 67 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG-D--DKVLEQITKQLNKLV 67 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC-C--HHHHHHHHHHHhcCc
Confidence 47778889999999999999999999998877654 478888888863 2 246777777777765
No 92
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=73.94 E-value=11 Score=33.46 Aligned_cols=64 Identities=13% Similarity=0.189 Sum_probs=46.9
Q ss_pred EEEEEccCCCChHHHHHHHHHccCCeEEEEEe--ecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 006217 588 LIEMRCPSREYILLDIMDAINNLHLDAYSVVS--SNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIA 653 (656)
Q Consensus 588 lIeI~C~~r~glL~~Im~aL~~L~LdV~svqs--S~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 653 (656)
.|.+.-..++|+|.+|-.++...|..+.+..+ +...|+-.++|.+.+.+ ...++.|.+-|+|.+
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d--~~~ieqI~kQL~Kli 69 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQD--DTSLHILIKKLKQQI 69 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCC--HHHHHHHHHHHhCCc
Confidence 47777889999999999999876666655554 44568888899886543 245667777777654
No 93
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=73.76 E-value=5.1 Score=48.39 Aligned_cols=66 Identities=24% Similarity=0.248 Sum_probs=46.4
Q ss_pred eecCCCCccceeeeCCCcEEeeCCCcCCCcchhhHHhhhhcCCcEEEEeeeCC-----eEEEecccccccCCh
Q 006217 121 VFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLD-----GVIELGVTELVPEDP 188 (656)
Q Consensus 121 sF~~G~GlpGra~~~g~~~Wl~~~~~~~~~~~~R~~la~sagIQTvvciP~~~-----GVvELGSt~~v~Ed~ 188 (656)
.|+.|+|+.|+++.++.++++.+...-+. |.....+...++..++|||+.. |||.+.+...-.-+.
T Consensus 67 ~l~~geGi~G~Va~tg~pV~V~Dv~~dpr--f~~~~~~~~~~~~S~L~VPL~~~geVIGVL~v~~~~~~~Fs~ 137 (748)
T PRK11061 67 TLAFDEGIVGLVGRLAEPINLADAQKHPS--FKYIPSVKEERFRAFLGVPIIYRRQLLGVLVVQQRELRQFDE 137 (748)
T ss_pred eccCCcchHHHHhccCceEEECCcccCcc--cccCccccCccceEEEEEEEeeCCEEEEEEEEeeCCCCCCCH
Confidence 57889999999999999999987764321 2111112246899999999973 788877766533333
No 94
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=73.66 E-value=18 Score=31.26 Aligned_cols=63 Identities=11% Similarity=0.208 Sum_probs=48.8
Q ss_pred EEEEEccCCCChHHHHHHHHHccCCeEEEEEeec--CCceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 006217 588 LIEMRCPSREYILLDIMDAINNLHLDAYSVVSSN--LDGVLTLALKSTFRGAAIAPAGIIEQALWKIAG 654 (656)
Q Consensus 588 lIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~--~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 654 (656)
.|.+.-..+||.|.+|+..++.-|..|.+.++.. .+++..++|.+. + ...++.|..-|.|++.
T Consensus 5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~--~--~~~i~ql~kQL~KL~d 69 (76)
T PRK11152 5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA--S--ERPIDLLSSQLNKLVD 69 (76)
T ss_pred EEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC--C--CchHHHHHHHHhcCcC
Confidence 5677778999999999999999888888776665 557777888773 2 3677888888877653
No 95
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=73.61 E-value=14 Score=35.36 Aligned_cols=68 Identities=19% Similarity=0.250 Sum_probs=54.6
Q ss_pred CCeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEee-cCCceEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 006217 584 EMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSS-NLDGVLTLALKSTFRGAAIAPAGIIEQALWKI 652 (656)
Q Consensus 584 e~dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS-~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~v 652 (656)
+..+.+.+.-..|-|.|.++++++-...+.|++++=+ ..+|+.-.||.-+..+. ..+++.|-.+|+++
T Consensus 70 ~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ssm-~~~V~~ii~kl~k~ 138 (150)
T COG4492 70 ERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSSM-EKDVDKIIEKLRKV 138 (150)
T ss_pred ceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchhh-hhhHHHHHHHHhcc
Confidence 4567788888999999999999999999999996654 57888777777766543 46788888888764
No 96
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=73.52 E-value=2.6 Score=49.50 Aligned_cols=38 Identities=39% Similarity=0.609 Sum_probs=32.3
Q ss_pred HHHhhH---HHhHHHHHhcCCC----CCCCcccchHHHHHHHHHH
Q 006217 465 SDKRTE---NEKFMVLRSMVPY----ISEVDKASILSDTIKYLKK 502 (656)
Q Consensus 465 ~ER~RR---n~~f~~LrslvP~----~~k~dKaSIL~daI~Yik~ 502 (656)
+-|-|| |+-|+.|.-+||- .+-.|||||+.-||.|+|-
T Consensus 53 AARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 53 AARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 446777 9999999999994 2667999999999999874
No 97
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=72.76 E-value=23 Score=28.04 Aligned_cols=59 Identities=5% Similarity=0.094 Sum_probs=37.9
Q ss_pred EEEEEcc---CCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 006217 588 LIEMRCP---SREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIA 653 (656)
Q Consensus 588 lIeI~C~---~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 653 (656)
+|.|.+. ..++++.+|+++|.+.++.|..+..+..+..+.+++.. .......++|++.+
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~~~is~~v~~-------~~~~~~~~~lh~~~ 64 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSERNISAVIDE-------DDATKALRAVHERF 64 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcccEEEEEEeH-------HHHHHHHHHHHHHH
Confidence 4556553 56899999999999999999876544444333333332 22345566666654
No 98
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=71.96 E-value=22 Score=29.23 Aligned_cols=59 Identities=8% Similarity=0.047 Sum_probs=41.7
Q ss_pred EEEccCCCChHHHHHHHHHccCCeEEEEEeecCC-ceEEEEEEEEeCCCcccCHHHHHHHHHH
Q 006217 590 EMRCPSREYILLDIMDAINNLHLDAYSVVSSNLD-GVLTLALKSTFRGAAIAPAGIIEQALWK 651 (656)
Q Consensus 590 eI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~d-g~l~~ti~aKv~~~~~~s~~~IkqAL~~ 651 (656)
.|.=|.|||-|.++++.|.+ +.+|+.++-...+ +...+.+..++++. ....+|.++|.+
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~--~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDR--EDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCH--HHHHHHHHHHHH
Confidence 46668899999999999999 9999987765432 33344455555542 466777777765
No 99
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=71.39 E-value=16 Score=35.90 Aligned_cols=63 Identities=10% Similarity=0.065 Sum_probs=48.8
Q ss_pred EEEEEccCCCChHHHHHHHHHccCCeEEEEEeecC--CceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 006217 588 LIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNL--DGVLTLALKSTFRGAAIAPAGIIEQALWKIA 653 (656)
Q Consensus 588 lIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~--dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 653 (656)
.|.|.-+.++|.|.+|...|...|+.+.+..+... ++...++|++.-. .-.++.|..-|.|++
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~---~~~i~qi~kQl~KLi 68 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGD---EQVIEQITKQLNKLI 68 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECC---HHHHHHHHHHHhccc
Confidence 57788899999999999999999999998877654 4787888887632 245666766676654
No 100
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=69.65 E-value=31 Score=27.47 Aligned_cols=59 Identities=3% Similarity=-0.021 Sum_probs=37.2
Q ss_pred EEEEEcc---CCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 006217 588 LIEMRCP---SREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIA 653 (656)
Q Consensus 588 lIeI~C~---~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 653 (656)
+|.|... .++|.+.+|+++|.+.+++|.-+..+..+..+.+++.. .....+.++||+.+
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~s~~~isf~v~~-------~~~~~a~~~lh~~~ 64 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGASEINISCVIDE-------KDAVKALNIIHTNL 64 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeH-------HHHHHHHHHHHHHH
Confidence 3444443 56899999999999999999876554444334433333 22344556666543
No 101
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=69.61 E-value=30 Score=29.46 Aligned_cols=57 Identities=5% Similarity=0.000 Sum_probs=40.4
Q ss_pred EccCCCChHHHHHHHHHccCCeEEEEEeecC-CceEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 006217 592 RCPSREYILLDIMDAINNLHLDAYSVVSSNL-DGVLTLALKSTFRGAAIAPAGIIEQALWKI 652 (656)
Q Consensus 592 ~C~~r~glL~~Im~aL~~L~LdV~svqsS~~-dg~l~~ti~aKv~~~~~~s~~~IkqAL~~v 652 (656)
.-+.++|.|.+|+..++..++.+++..+--. +...-+.+-..+.+.. ..|+++|..+
T Consensus 6 ~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~----~~i~~~l~~l 63 (74)
T cd04929 6 SLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQ----RRLDELVQLL 63 (74)
T ss_pred EcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCH----HHHHHHHHHH
Confidence 3478899999999999999999999988653 2333455555555432 3666666554
No 102
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=67.23 E-value=24 Score=35.23 Aligned_cols=64 Identities=11% Similarity=0.193 Sum_probs=49.5
Q ss_pred EEEEEccCCCChHHHHHHHHHccCCeEEEEEeec--CCceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 006217 588 LIEMRCPSREYILLDIMDAINNLHLDAYSVVSSN--LDGVLTLALKSTFRGAAIAPAGIIEQALWKIAG 654 (656)
Q Consensus 588 lIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~--~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 654 (656)
.|.+.-..+||+|.+|...|...|+.+.+.++.. ..|.-.++|... +.. -.++.|.+.|.+++.
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~--~~~-~~ieqL~kQL~KLid 69 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP--GDD-RTIEQLTKQLYKLVN 69 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE--CCH-HHHHHHHHHHHHHhH
Confidence 5778888999999999999999999998877765 456666666654 322 228899999998764
No 103
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.38 E-value=37 Score=26.83 Aligned_cols=59 Identities=8% Similarity=0.059 Sum_probs=37.6
Q ss_pred EEEEEcc---CCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 006217 588 LIEMRCP---SREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIA 653 (656)
Q Consensus 588 lIeI~C~---~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 653 (656)
+|.|.+. .+++.+.+|+++|.+.++.+.-+..+..+..+.+++.- .......++||+.+
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~~~isf~v~~-------~d~~~~~~~lh~~~ 64 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGSSEISIMIGVHN-------EDADKAVKAIYEEF 64 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcccEEEEEEeH-------HHHHHHHHHHHHHH
Confidence 4555553 56899999999999999999776544433333333222 23456677777654
No 104
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=64.10 E-value=28 Score=41.81 Aligned_cols=70 Identities=13% Similarity=-0.007 Sum_probs=56.8
Q ss_pred CCeEEEEEE-ccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 006217 584 EMDVLIEMR-CPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIAG 654 (656)
Q Consensus 584 e~dvlIeI~-C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 654 (656)
+.+..+.|. |+.++|+|.++...|--.++.|++|.+.+ +|....++.+.-......++..+.|+++..+.
T Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 614 (693)
T PRK00227 544 EEDGFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVY 614 (693)
T ss_pred ccCCeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhc
Confidence 333455555 59999999999999999999999999999 88777777777665556889999999987664
No 105
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=63.31 E-value=5.9 Score=44.03 Aligned_cols=38 Identities=37% Similarity=0.516 Sum_probs=32.1
Q ss_pred HHhhH---HHhHHHHHhcCCCC----CCCcccchHHHHHHHHHHH
Q 006217 466 DKRTE---NEKFMVLRSMVPYI----SEVDKASILSDTIKYLKKL 503 (656)
Q Consensus 466 ER~RR---n~~f~~LrslvP~~----~k~dKaSIL~daI~Yik~L 503 (656)
-|.|| |-.|..|..+||-. +..||+||+.-|..|||--
T Consensus 9 A~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr 53 (598)
T KOG3559|consen 9 ARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMR 53 (598)
T ss_pred HHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHH
Confidence 45666 88899999999953 6689999999999999853
No 106
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=63.04 E-value=32 Score=29.79 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=45.9
Q ss_pred EEEEEccCCCChHHHHHHHHHccCCeEEEEEee--cCCceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 006217 588 LIEMRCPSREYILLDIMDAINNLHLDAYSVVSS--NLDGVLTLALKSTFRGAAIAPAGIIEQALWKIA 653 (656)
Q Consensus 588 lIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS--~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 653 (656)
.|.+.-..++|+|.+|..++..-|..+.+..++ ...++..++|.+. +. ...++.|..-|.|++
T Consensus 4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~--~~-~~~i~qi~kQL~KLi 68 (76)
T PRK06737 4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV--CT-ENEATLLVSQLKKLI 68 (76)
T ss_pred EEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE--CC-HHHHHHHHHHHhCCc
Confidence 577788899999999999998887777776665 3458888888875 21 235556666666554
No 107
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=62.91 E-value=35 Score=34.49 Aligned_cols=65 Identities=15% Similarity=0.209 Sum_probs=50.0
Q ss_pred EEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCC----c--eEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 006217 587 VLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLD----G--VLTLALKSTFRGAAIAPAGIIEQALWKIA 653 (656)
Q Consensus 587 vlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~d----g--~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 653 (656)
+.|++.-+.|||+..+|-++|-+.++.|...+.-+.. | +|...+.+.+.. .....+++.+|..+.
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~--~~~~~~L~~~l~~l~ 166 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPA--SQDAANIEQAFKALC 166 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCC--CCCHHHHHHHHHHHH
Confidence 5678888899999999999999999999988776543 3 555555555543 356889999887764
No 108
>PRK06382 threonine dehydratase; Provisional
Probab=61.87 E-value=36 Score=38.03 Aligned_cols=67 Identities=24% Similarity=0.209 Sum_probs=50.4
Q ss_pred eCCeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEee-----cCCceEEEEEEEEeCCCcccCHHHHHHHHHH
Q 006217 583 QEMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSS-----NLDGVLTLALKSTFRGAAIAPAGIIEQALWK 651 (656)
Q Consensus 583 ~e~dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS-----~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~ 651 (656)
.+..+.|.|.=+.++|.|.+|.+.|.+.++.|+++... ...+...++|+.+.++. -....|+++|.+
T Consensus 327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~--~~~~~v~~~L~~ 398 (406)
T PRK06382 327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQ--DHLDRILNALRE 398 (406)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCH--HHHHHHHHHHHH
Confidence 35667888889999999999999999999999987763 33456667777776532 334577777764
No 109
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=60.99 E-value=35 Score=37.55 Aligned_cols=67 Identities=18% Similarity=0.183 Sum_probs=51.1
Q ss_pred eCCeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEee-----cCCceEEEEEEEEeCCCcccCHHHHHHHHHH
Q 006217 583 QEMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSS-----NLDGVLTLALKSTFRGAAIAPAGIIEQALWK 651 (656)
Q Consensus 583 ~e~dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS-----~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~ 651 (656)
.+..+.|.|.=+.++|.|.+|++.|.+.+..|+++... ...+...++|+.+..+ .....+|.++|.+
T Consensus 302 ~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~--~~~~~~i~~~L~~ 373 (380)
T TIGR01127 302 SGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRG--KEHLDEILKILRD 373 (380)
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCC--HHHHHHHHHHHHH
Confidence 35667889999999999999999999999999988554 1246666777777654 2455677777764
No 110
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=60.53 E-value=40 Score=36.00 Aligned_cols=67 Identities=13% Similarity=0.218 Sum_probs=50.1
Q ss_pred eEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecC--CceEEEEEEEEeCCCc-ccCHHHHHHHHHHHhh
Q 006217 586 DVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNL--DGVLTLALKSTFRGAA-IAPAGIIEQALWKIAG 654 (656)
Q Consensus 586 dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~--dg~l~~ti~aKv~~~~-~~s~~~IkqAL~~vi~ 654 (656)
.+.+.+.||.++|+...|-.-|-+.|..+++++--+. .|.| -.++.+.... ..+.+.+.+++..+..
T Consensus 7 ~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~F--FmR~~f~~~~~~~~~~~l~~~f~~~a~ 76 (287)
T COG0788 7 TFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRF--FMRVEFEGEGGPLDREALRAAFAPLAE 76 (287)
T ss_pred ceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeE--EEEEEEecCCCcccHHHHHHHHHHHHH
Confidence 4678999999999999999999999999998765532 2444 3555555433 3788888888877543
No 111
>PRK08198 threonine dehydratase; Provisional
Probab=60.03 E-value=43 Score=37.18 Aligned_cols=66 Identities=21% Similarity=0.213 Sum_probs=50.1
Q ss_pred CCeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeec-----CCceEEEEEEEEeCCCcccCHHHHHHHHHH
Q 006217 584 EMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSN-----LDGVLTLALKSTFRGAAIAPAGIIEQALWK 651 (656)
Q Consensus 584 e~dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~-----~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~ 651 (656)
++.+.+.|.=+.+||.|.++++.|.+.+..|+.+...- ..+...++|..++++. ...++|.++|.+
T Consensus 325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~--~~~~~l~~~L~~ 395 (404)
T PRK08198 325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGP--EHIEEILDALRD 395 (404)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCH--HHHHHHHHHHHH
Confidence 56678888889999999999999999999888776542 3466677777776542 356677777754
No 112
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=58.84 E-value=34 Score=26.24 Aligned_cols=34 Identities=9% Similarity=0.162 Sum_probs=27.2
Q ss_pred EEEEEcc---CCCChHHHHHHHHHccCCeEEEEEeec
Q 006217 588 LIEMRCP---SREYILLDIMDAINNLHLDAYSVVSSN 621 (656)
Q Consensus 588 lIeI~C~---~r~glL~~Im~aL~~L~LdV~svqsS~ 621 (656)
+|.|.+. .+++.+.+|+++|.+.++.+.....+.
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 4666654 568999999999999999998776544
No 113
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=57.82 E-value=55 Score=30.42 Aligned_cols=61 Identities=8% Similarity=-0.061 Sum_probs=40.8
Q ss_pred EEEEEccCCCChHHHHHHHHHccCCeEEEEEeecC-CceEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 006217 588 LIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNL-DGVLTLALKSTFRGAAIAPAGIIEQALWKI 652 (656)
Q Consensus 588 lIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~-dg~l~~ti~aKv~~~~~~s~~~IkqAL~~v 652 (656)
.|-+..++++|.|.+||..+...|+.+++..+--. +...-+.+-..+.+.. ..++++|..+
T Consensus 43 Slifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~----~~~~~aL~~L 104 (115)
T cd04930 43 TLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHR----SDLLQLISSL 104 (115)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCH----HHHHHHHHHH
Confidence 34444488999999999999999999999988654 2222344444444432 2466666554
No 114
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=57.46 E-value=65 Score=25.35 Aligned_cols=59 Identities=3% Similarity=0.035 Sum_probs=37.4
Q ss_pred EEEEEcc---CCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 006217 588 LIEMRCP---SREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIA 653 (656)
Q Consensus 588 lIeI~C~---~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 653 (656)
+|.|.+. ..++++.+|+++|.+.++.+.-+..+..+..+.+++.. .....+.+.||+.+
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~~~isf~i~~-------~~~~~~~~~Lh~~~ 64 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSEYNISFVVAE-------DDGWAAVKAVHDEF 64 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeH-------HHHHHHHHHHHHHh
Confidence 4455443 56899999999999999999776544433333333322 23456666777655
No 115
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=56.81 E-value=49 Score=27.71 Aligned_cols=62 Identities=11% Similarity=0.117 Sum_probs=38.1
Q ss_pred EEEEEc---cCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHH
Q 006217 588 LIEMRC---PSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWK 651 (656)
Q Consensus 588 lIeI~C---~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~ 651 (656)
+|.|.+ +..+|.+.+|+++|.+.++.|..... .+..+.+.+...-.........+|.+.|++
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~~--s~~~is~~v~~~~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIST--SEVSVSLTLDPTKNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEEc--CCcEEEEEEEchhhccchHHHHHHHHHHHh
Confidence 455543 45689999999999999999987753 334455555543210001244466666655
No 116
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=56.79 E-value=48 Score=24.77 Aligned_cols=27 Identities=11% Similarity=0.126 Sum_probs=22.7
Q ss_pred CCChHHHHHHHHHccCCeEEEEEeecC
Q 006217 596 REYILLDIMDAINNLHLDAYSVVSSNL 622 (656)
Q Consensus 596 r~glL~~Im~aL~~L~LdV~svqsS~~ 622 (656)
.+|.+.+|+++|.+.++.+.....+..
T Consensus 13 ~~~~~~~i~~~l~~~~i~i~~i~~~~~ 39 (60)
T cd04868 13 TPGVAAKIFSALAEAGINVDMISQSES 39 (60)
T ss_pred CCCHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 679999999999999999987755543
No 117
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=56.10 E-value=76 Score=27.35 Aligned_cols=62 Identities=10% Similarity=0.045 Sum_probs=38.9
Q ss_pred EEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCC-ceEEEEEEEEeCCCcccCHHHHHHHHHH
Q 006217 587 VLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLD-GVLTLALKSTFRGAAIAPAGIIEQALWK 651 (656)
Q Consensus 587 vlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~d-g~l~~ti~aKv~~~~~~s~~~IkqAL~~ 651 (656)
.++.+.=|.+||-|.+++++|- +-+|..+...... +...+.|..+++++ ......+.++|.+
T Consensus 2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~-~~~~~~i~~~L~~ 64 (85)
T cd04906 2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANG-AEELAELLEDLKS 64 (85)
T ss_pred eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCc-HHHHHHHHHHHHH
Confidence 5688888999999999999998 5555554443321 33334444454441 2445666666654
No 118
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.46 E-value=94 Score=26.40 Aligned_cols=43 Identities=12% Similarity=0.236 Sum_probs=30.7
Q ss_pred EEEEE---ccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEE
Q 006217 588 LIEMR---CPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKS 632 (656)
Q Consensus 588 lIeI~---C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~a 632 (656)
+|.|. .+.++|.+.+|+++|.+.++.|-.+..+. .-+.+++..
T Consensus 3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~~s~--~~iSftv~~ 48 (75)
T cd04932 3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITTSE--ISVALTLDN 48 (75)
T ss_pred EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEeecC--CEEEEEEec
Confidence 45553 45679999999999999999999875422 334555544
No 119
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=52.13 E-value=81 Score=25.42 Aligned_cols=50 Identities=8% Similarity=0.092 Sum_probs=32.2
Q ss_pred CCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 006217 595 SREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIA 653 (656)
Q Consensus 595 ~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 653 (656)
..+|++.+++.+|.+.++.|. ++++.+-.+.+.+.- .....+.++|++.+
T Consensus 13 ~~~gi~~~if~aL~~~~I~v~--~~~~Se~~is~~v~~-------~~~~~av~~Lh~~f 62 (64)
T cd04937 13 GVPGVMAKIVGALSKEGIEIL--QTADSHTTISCLVSE-------DDVKEAVNALHEAF 62 (64)
T ss_pred CCcCHHHHHHHHHHHCCCCEE--EEEcCccEEEEEEcH-------HHHHHHHHHHHHHh
Confidence 579999999999999999996 444433233222221 23345666776654
No 120
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.47 E-value=56 Score=27.75 Aligned_cols=56 Identities=13% Similarity=0.071 Sum_probs=36.7
Q ss_pred cCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHH
Q 006217 594 PSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWK 651 (656)
Q Consensus 594 ~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~ 651 (656)
+..+|.+.+|+++|.+.++.|-.+.. ....+.+++...-.+-......+|.+.|++
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~~--s~~~isftv~~~~~~~~~~~~~~l~~el~~ 67 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVST--SETNVTVSLDPDPNGLDPDVLDALLDDLNQ 67 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEEe--CCCEEEEEEeCcccccchHHHHHHHHHHHh
Confidence 45689999999999999999998854 334456666554311011134566666665
No 121
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=50.11 E-value=73 Score=38.90 Aligned_cols=55 Identities=13% Similarity=0.054 Sum_probs=46.4
Q ss_pred EEEEeCCeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEee-cCCceEEEEEEEE
Q 006217 579 KVSIQEMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSS-NLDGVLTLALKST 633 (656)
Q Consensus 579 eV~i~e~dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS-~~dg~l~~ti~aK 633 (656)
.++......-|-|-|+.++.++..|..++...|++|+.||+- +.||+.+-+|.+.
T Consensus 677 ~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~ 732 (867)
T COG2844 677 SVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVL 732 (867)
T ss_pred eecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEe
Confidence 344455668899999999999999999999999999999975 5789877777665
No 122
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases. cGMP-dependent 3',5'-cyclic phosphodiesterase (3.1.4.17 from EC) catalyses the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. A phytochrome is a regulatory photoreceptor which exists in 2 forms that are reversibly interconvertible by light, the PR form that absorbs maximally in the red region of the spectrum, and the PFR form that absorbs maximally in the far-red region. This domain is also found in NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.; GO: 0005515 protein binding; PDB: 2Y8H_A 3DBA_B 3CI6_A 3E0Y_B 2W3G_B 2W3D_A 2W3E_A 2Y79_B 2W3H_A 2W3F_A ....
Probab=49.83 E-value=30 Score=31.34 Aligned_cols=63 Identities=17% Similarity=0.261 Sum_probs=44.3
Q ss_pred eecCCCCccceeeeCCCcEEeeCCCcCCCcch-hhHH------------hhhhcCCcEEEEeeeC-----CeEEEecccc
Q 006217 121 VFSSGQGLPGRALANSETIWLCNAQCADSKVF-SRSL------------LAKSASIQTVICFPHL-----DGVIELGVTE 182 (656)
Q Consensus 121 sF~~G~GlpGra~~~g~~~Wl~~~~~~~~~~~-~R~~------------la~sagIQTvvciP~~-----~GVvELGSt~ 182 (656)
.+..+.+..|+++.++.++.+.+....+.... .... .-...|+++++|+|+. -|||.|..+.
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vPi~~~g~~~G~l~l~~~~ 130 (154)
T PF01590_consen 51 RLSMDESICGQVLQSREPIVISDVAADPRFAPQIAAQSALRALSSAERPFLAEYGVRSYLCVPIISGGRLIGVLSLYRTR 130 (154)
T ss_dssp EEETTSSHHHHHHHHTSCEEESSSGGSTTSSCHHHHHHTTBTTTHHHHHHHHTTTESEEEEEEEEETTEEEEEEEEEEES
T ss_pred cccccccHHHHHHhCCCeEeeccccccccccccccccccccccccccccccccccCceeeEeeeecccCcEEEEEEEECC
Confidence 44455677999999999999988654332111 1111 1126799999999985 3899999888
Q ss_pred c
Q 006217 183 L 183 (656)
Q Consensus 183 ~ 183 (656)
.
T Consensus 131 ~ 131 (154)
T PF01590_consen 131 P 131 (154)
T ss_dssp S
T ss_pred C
Confidence 7
No 123
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases. Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Probab=49.80 E-value=30 Score=29.42 Aligned_cols=59 Identities=22% Similarity=0.461 Sum_probs=41.4
Q ss_pred eecCCCCccceeeeCCCcEEeeCCCcCCCcchhhHHhhhhcCCcEEEEeeeC-----CeEEEeccc
Q 006217 121 VFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHL-----DGVIELGVT 181 (656)
Q Consensus 121 sF~~G~GlpGra~~~g~~~Wl~~~~~~~~~~~~R~~la~sagIQTvvciP~~-----~GVvELGSt 181 (656)
.|+.+.++.++++.++.++.+.+..... .+.........|++.++|+|+. -|+|.+.+.
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~Pl~~~~~~~G~l~~~~~ 114 (149)
T smart00065 51 RYPLGEGLAGRVAETGRPLNIPDVEADP--VFALDLLGRYQGVRSFLAVPLVADGELVGVLALHNK 114 (149)
T ss_pred EecCCCChHHHHHHcCCeEEeechhhCC--ccccccccceeceeeEEEeeeeecCEEEEEEEEEec
Confidence 4566668889999999998888655432 2223333444559999999986 378888876
No 124
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=48.90 E-value=76 Score=41.54 Aligned_cols=70 Identities=13% Similarity=0.118 Sum_probs=54.6
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEe---ecCC--ceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 006217 585 MDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVS---SNLD--GVLTLALKSTFRGAAIAPAGIIEQALWKIAG 654 (656)
Q Consensus 585 ~dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqs---S~~d--g~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 654 (656)
..+.++|-.+.++..|++||-+|++|||.|+.-.. ...+ .+..+.+.....+........+++.|..++.
T Consensus 488 ~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~ 562 (1528)
T PF05088_consen 488 GRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFE 562 (1528)
T ss_pred CeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHH
Confidence 45789999999999999999999999999998653 3332 3567888888776655677777777766553
No 125
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=48.31 E-value=75 Score=28.86 Aligned_cols=64 Identities=6% Similarity=0.064 Sum_probs=44.7
Q ss_pred eEEEEEEccCCCChHHHHHHHHHccCCeEEE--EEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 006217 586 DVLIEMRCPSREYILLDIMDAINNLHLDAYS--VVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIA 653 (656)
Q Consensus 586 dvlIeI~C~~r~glL~~Im~aL~~L~LdV~s--vqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 653 (656)
...|.+.-..++|+|.+|...+..-|..+.+ |--+...++-.++|.+. +. ..++.|.+-|.|++
T Consensus 8 ~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~--~~--~~i~Qi~kQL~KLi 73 (96)
T PRK08178 8 NVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN--DD--QRLEQMISQIEKLE 73 (96)
T ss_pred CEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc--Cc--hHHHHHHHHHhCCc
Confidence 3567888889999999999999765555554 44444557777788764 32 46667777676654
No 126
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=47.50 E-value=56 Score=39.32 Aligned_cols=51 Identities=22% Similarity=0.292 Sum_probs=44.5
Q ss_pred eEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecC-CceEEEEEEEEeCC
Q 006217 586 DVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNL-DGVLTLALKSTFRG 636 (656)
Q Consensus 586 dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~-dg~l~~ti~aKv~~ 636 (656)
.+.|.|.-.+|+|+|.+|+++|.+.+..|+++++... ++++.+.|...|.+
T Consensus 627 ~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~n 678 (701)
T COG0317 627 PVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVKN 678 (701)
T ss_pred EEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEECc
Confidence 5678888999999999999999999999999998874 66777888888776
No 127
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.91 E-value=1.1e+02 Score=23.51 Aligned_cols=57 Identities=11% Similarity=0.082 Sum_probs=35.6
Q ss_pred EEEEEc---cCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 006217 588 LIEMRC---PSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIA 653 (656)
Q Consensus 588 lIeI~C---~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 653 (656)
+|.|.+ ...++++.+|+++|.+.++.+.....+ +..+.+.+.. .....+.++|++.+
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~s--~~~is~~v~~-------~~~~~~~~~l~~~l 61 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMISTS--EIKISCLVDE-------DDAEKAVRALHEAF 61 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEcc--CCeEEEEEeH-------HHHHHHHHHHHHHh
Confidence 345543 245899999999999999999877643 2222332222 23445566666654
No 128
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=46.85 E-value=14 Score=42.23 Aligned_cols=54 Identities=22% Similarity=0.225 Sum_probs=39.2
Q ss_pred cccchhhHHHhhH---HHhHHHHHhcCCCC----CCCcccchHHHHHHHHHHHHHHHHHHH
Q 006217 458 FCEEHISSDKRTE---NEKFMVLRSMVPYI----SEVDKASILSDTIKYLKKLEARVEELE 511 (656)
Q Consensus 458 ~~~~h~~~ER~RR---n~~f~~LrslvP~~----~k~dKaSIL~daI~Yik~L~~~v~~Le 511 (656)
..+.++..||-|- |+-|..|--|.--- ..-.|.-||..|+.-|-.|+++|.|-.
T Consensus 526 RR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERN 586 (632)
T KOG3910|consen 526 RRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERN 586 (632)
T ss_pred HHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHcc
Confidence 3445556666554 88899887765422 223588999999999999999998643
No 129
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.43 E-value=1.3e+02 Score=26.03 Aligned_cols=43 Identities=12% Similarity=0.250 Sum_probs=31.1
Q ss_pred EEEEEc---cCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEE
Q 006217 588 LIEMRC---PSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKS 632 (656)
Q Consensus 588 lIeI~C---~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~a 632 (656)
+|.|.. +..+|.+.+|+++|.+.++.|-.+.. .+..+.+++..
T Consensus 3 ~i~i~~~~~~~~~g~~a~IF~~La~~~InVDmI~q--s~~sISftV~~ 48 (78)
T cd04933 3 MLDITSTRMLGQYGFLAKVFSIFETLGISVDVVAT--SEVSISLTLDP 48 (78)
T ss_pred EEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEe--cCCEEEEEEEh
Confidence 455544 45689999999999999999998854 33445555554
No 130
>PRK11899 prephenate dehydratase; Provisional
Probab=44.34 E-value=1.3e+02 Score=32.26 Aligned_cols=64 Identities=9% Similarity=0.048 Sum_probs=46.3
Q ss_pred EEEEccCCCChHHHHHHHHHccCCeEEEEEeecC-CceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 006217 589 IEMRCPSREYILLDIMDAINNLHLDAYSVVSSNL-DGVLTLALKSTFRGAAIAPAGIIEQALWKIAG 654 (656)
Q Consensus 589 IeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~-dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 654 (656)
|-+..+.++|.|.+|+.++...||..+...|--. ++..-+.|-..+.+. ..-..+++||..+-.
T Consensus 197 l~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~--~~d~~v~~aL~~l~~ 261 (279)
T PRK11899 197 FVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGH--PEDRNVALALEELRF 261 (279)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECC--CCCHHHHHHHHHHHH
Confidence 4444478999999999999999999999988643 455566677777663 233356777776543
No 131
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=43.79 E-value=80 Score=24.96 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=27.4
Q ss_pred CCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEE
Q 006217 595 SREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKS 632 (656)
Q Consensus 595 ~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~a 632 (656)
.++|.+.+|+++|.+.++.|..+.. ....+.+++..
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i~t--~~~~is~~v~~ 47 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIPT--SENSVTLYLDD 47 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEEec--CCCEEEEEEeh
Confidence 5689999999999999999998743 33445555554
No 132
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=43.37 E-value=15 Score=38.69 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=35.3
Q ss_pred hhHHHhhH---HHhHHHHHhcCCCC---CCCcccchHHHHHHHHHHHHHH
Q 006217 463 ISSDKRTE---NEKFMVLRSMVPYI---SEVDKASILSDTIKYLKKLEAR 506 (656)
Q Consensus 463 ~~~ER~RR---n~~f~~LrslvP~~---~k~dKaSIL~daI~Yik~L~~~ 506 (656)
+..||+|- |+-|..||.++|.. .|+-|.=.|.-|-+||..|+.-
T Consensus 77 NaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~ 126 (254)
T KOG3898|consen 77 NARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEV 126 (254)
T ss_pred cchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccc
Confidence 46788777 99999999999954 6666777898899999888743
No 133
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=43.07 E-value=84 Score=26.61 Aligned_cols=49 Identities=12% Similarity=0.190 Sum_probs=36.2
Q ss_pred CceEEEEEeCCeEEEEEEccCC------CChHHHHHHHHHccCCeEEEEEeecCC
Q 006217 575 LADVKVSIQEMDVLIEMRCPSR------EYILLDIMDAINNLHLDAYSVVSSNLD 623 (656)
Q Consensus 575 ~~~VeV~i~e~dvlIeI~C~~r------~glL~~Im~aL~~L~LdV~svqsS~~d 623 (656)
...|.|++.++.+.|.|.+... ..-+..+-++|...|+.+.+++++..+
T Consensus 26 ~v~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~~~ 80 (85)
T PF02120_consen 26 SVEVKLRLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQGS 80 (85)
T ss_dssp -EEEEEEEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEESS-
T ss_pred cEEEEEEEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEECC
Confidence 3678888899999999999765 345677888999999999988877643
No 134
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=42.77 E-value=16 Score=35.77 Aligned_cols=47 Identities=21% Similarity=0.352 Sum_probs=36.5
Q ss_pred ccchhhHHHhhH---HHhHHHHHhcCCCC--CCCcccchHHHHHHHHHHHHH
Q 006217 459 CEEHISSDKRTE---NEKFMVLRSMVPYI--SEVDKASILSDTIKYLKKLEA 505 (656)
Q Consensus 459 ~~~h~~~ER~RR---n~~f~~LrslvP~~--~k~dKaSIL~daI~Yik~L~~ 505 (656)
..-|...||+|- |+-|.+||-++|.. .|..|.--|.-|-.||..|-+
T Consensus 79 rv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~ 130 (173)
T KOG4447|consen 79 RVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQ 130 (173)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhh
Confidence 456888999998 99999999999973 444455557888888877754
No 135
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.95 E-value=1e+02 Score=25.05 Aligned_cols=51 Identities=16% Similarity=0.094 Sum_probs=34.5
Q ss_pred CCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 006217 596 REYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIA 653 (656)
Q Consensus 596 r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 653 (656)
.+|++.+++++|.+.++.|.-+..++.+-.+.+.+..+ ......++|++.+
T Consensus 13 ~~~~~~~i~~aL~~~~I~v~~i~~g~s~~sis~~v~~~-------~~~~av~~Lh~~f 63 (65)
T cd04918 13 SSLILERAFHVLYTKGVNVQMISQGASKVNISLIVNDS-------EAEGCVQALHKSF 63 (65)
T ss_pred CccHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHH-------HHHHHHHHHHHHH
Confidence 47899999999999999998766656555554444332 2345556666543
No 136
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=37.85 E-value=1.8e+02 Score=24.57 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=38.1
Q ss_pred EEEEEcc---CCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEE-eCCCcccCHHHHHHHHHH
Q 006217 588 LIEMRCP---SREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKST-FRGAAIAPAGIIEQALWK 651 (656)
Q Consensus 588 lIeI~C~---~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aK-v~~~~~~s~~~IkqAL~~ 651 (656)
.|.|.+. ..+|.+.+|+++|.+.++.|-.+..+ +..+.+++... +.+ ....+|.+.|++
T Consensus 3 ~I~i~~~~m~~~~g~~~~If~~la~~~I~vd~I~~s--~~~isftv~~~~~~~---~~l~~l~~el~~ 65 (73)
T cd04934 3 VINIHSNKKSLSHGFLARIFAILDKYRLSVDLISTS--EVHVSMALHMENAED---TNLDAAVKDLQK 65 (73)
T ss_pred EEEEEcccCccccCHHHHHHHHHHHcCCcEEEEEeC--CCEEEEEEehhhcCh---HHHHHHHHHHHH
Confidence 3444443 45899999999999999999988542 23445555542 111 145567777666
No 137
>PRK08526 threonine dehydratase; Provisional
Probab=37.17 E-value=1.4e+02 Score=33.46 Aligned_cols=67 Identities=9% Similarity=0.144 Sum_probs=50.7
Q ss_pred eCCeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecC--C---ceEEEEEEEEeCCCcccCHHHHHHHHHH
Q 006217 583 QEMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNL--D---GVLTLALKSTFRGAAIAPAGIIEQALWK 651 (656)
Q Consensus 583 ~e~dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~--d---g~l~~ti~aKv~~~~~~s~~~IkqAL~~ 651 (656)
.+..+.+.+.=|.|||-|.++++.|-+.+.+|+.+.-... + +...+.+..++++. .....|.++|++
T Consensus 323 ~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~l~~ 394 (403)
T PRK08526 323 SYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGK--EHQEEIRKILTE 394 (403)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCH--HHHHHHHHHHHH
Confidence 3677889999999999999999999999999998776432 1 44566666766652 456677777754
No 138
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=37.14 E-value=1.9e+02 Score=22.20 Aligned_cols=50 Identities=12% Similarity=0.073 Sum_probs=32.7
Q ss_pred CCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 006217 595 SREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIA 653 (656)
Q Consensus 595 ~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 653 (656)
..++++.+|+++|.+.++.|.....+ +.. ++|... . .....+.+.|++.+
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~~s--~~~--is~~v~--~---~d~~~~~~~l~~~~ 61 (63)
T cd04936 12 SHPGVAAKMFEALAEAGINIEMISTS--EIK--ISCLID--E---DDAEKAVRALHEAF 61 (63)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEcc--Cce--EEEEEe--H---HHHHHHHHHHHHHh
Confidence 45899999999999999999877643 222 233332 1 33445666666654
No 139
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=36.02 E-value=2.3e+02 Score=25.17 Aligned_cols=63 Identities=8% Similarity=0.115 Sum_probs=48.0
Q ss_pred EEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecC--CceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 006217 587 VLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNL--DGVLTLALKSTFRGAAIAPAGIIEQALWKIA 653 (656)
Q Consensus 587 vlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~--dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 653 (656)
..+.|.-..+|+.|.+|+.+.+.-|.-|..++.|.. .|...+.+.++ +. -+++-+..-|.|+.
T Consensus 4 yqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~--s~--R~~~lL~~QLeKl~ 68 (86)
T COG3978 4 YQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVD--SD--RSVDLLTSQLEKLY 68 (86)
T ss_pred EEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEc--CC--CChHHHHHHHHHHc
Confidence 356677788999999999999999999999999986 56766666654 32 45666666666653
No 140
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=35.14 E-value=2.3e+02 Score=22.41 Aligned_cols=28 Identities=14% Similarity=0.329 Sum_probs=23.2
Q ss_pred ccCCCChHHHHHHHHHccCCeEEEEEee
Q 006217 593 CPSREYILLDIMDAINNLHLDAYSVVSS 620 (656)
Q Consensus 593 C~~r~glL~~Im~aL~~L~LdV~svqsS 620 (656)
.+.++|.+.+|+++|.+.++.+..+..+
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~ 36 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQN 36 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEeC
Confidence 3677999999999999999999765433
No 141
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=35.02 E-value=1.3e+02 Score=24.75 Aligned_cols=51 Identities=10% Similarity=0.014 Sum_probs=33.3
Q ss_pred CCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 006217 596 REYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIA 653 (656)
Q Consensus 596 r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 653 (656)
++|++.+++++|.+.+++|.....+..+-.+.+.+.. .......++|++.+
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s~~~is~~V~~-------~~~~~av~~Lh~~f 64 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSMRNVDVQFVVDR-------DDYDNAIKALHAAL 64 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecCCeeEEEEEEEH-------HHHHHHHHHHHHHH
Confidence 4689999999999999999866555544333333322 23445566666543
No 142
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=34.67 E-value=1.5e+02 Score=24.53 Aligned_cols=36 Identities=14% Similarity=0.179 Sum_probs=27.1
Q ss_pred EEEEEc---cCCCChHHHHHHHHHccCCeEEEEEeecCC
Q 006217 588 LIEMRC---PSREYILLDIMDAINNLHLDAYSVVSSNLD 623 (656)
Q Consensus 588 lIeI~C---~~r~glL~~Im~aL~~L~LdV~svqsS~~d 623 (656)
+|.|.. ...++.+.+++++|.+.++.+.....+..+
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~ 41 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQASSE 41 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCc
Confidence 455533 356899999999999999999877655433
No 143
>PF07009 DUF1312: Protein of unknown function (DUF1312); InterPro: IPR010739 This family consists of several bacterial proteins of around 120 residues in length. The function of this family is unknown.; PDB: 4ESN_B 1NPP_B 1M1G_D 1NPR_A 1M1H_A 2KPP_A 3LD7_C.
Probab=33.77 E-value=27 Score=32.03 Aligned_cols=46 Identities=13% Similarity=0.328 Sum_probs=32.6
Q ss_pred CCCCccceeeeCCCcEEeeCCCcCCCcchhhHHhhhhcCCcEEEEeee
Q 006217 124 SGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPH 171 (656)
Q Consensus 124 ~G~GlpGra~~~g~~~Wl~~~~~~~~~~~~R~~la~sagIQTvvciP~ 171 (656)
.|.+..-..-..+.-+|+..++ ++.+.|.+.---...| |+|||+|-
T Consensus 55 ~~~~g~~~i~i~~g~vrv~~s~-CpdkiCv~~G~I~~~G-~~IVCLPn 100 (113)
T PF07009_consen 55 DGDGGYNTIEIKDGKVRVIESD-CPDKICVKTGWISRPG-QSIVCLPN 100 (113)
T ss_dssp ETTTCEEEEEEETTEEEEEEES-TSS-HHHHS-SB-STT--EEEETTT
T ss_pred ecCCcEEEEEEECCEEEEEECC-CCCcchhhCCCcCCCC-CEEEEcCC
Confidence 5556667788888999999888 8889998854444444 89999984
No 144
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=32.81 E-value=62 Score=38.62 Aligned_cols=60 Identities=23% Similarity=0.328 Sum_probs=40.4
Q ss_pred cCCCCccceeeeCCCcEEeeCCCcCCCcchhhHHh-hhhcCCcEEEEeeeC-----CeEEEecccc
Q 006217 123 SSGQGLPGRALANSETIWLCNAQCADSKVFSRSLL-AKSASIQTVICFPHL-----DGVIELGVTE 182 (656)
Q Consensus 123 ~~G~GlpGra~~~g~~~Wl~~~~~~~~~~~~R~~l-a~sagIQTvvciP~~-----~GVvELGSt~ 182 (656)
+.+.|+.|+|+.+|+++=+..........+.+... ....+|+.++|||+. -|||.+++..
T Consensus 253 ~~~~~l~g~V~~~~~p~lv~~~~~d~~~~~~~~~~~~~~~~~~s~l~vPL~~~~~v~GvL~l~~~~ 318 (686)
T PRK15429 253 DEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCE 318 (686)
T ss_pred CcccchHHHHHhcCceEEEECccCcccchhhhhhhhcccccceEEEEEeEEECCEEEEEEEEeeCC
Confidence 34558999999999999885544322222333222 223578999999986 3999998664
No 145
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=32.38 E-value=48 Score=38.11 Aligned_cols=78 Identities=10% Similarity=0.098 Sum_probs=52.2
Q ss_pred eecCCCC-ccceeeeCCCcEEeeCCCcCCCcchhhHHh--hhhcCCcEEEEeeeC-----CeEEEeccccc---ccCChh
Q 006217 121 VFSSGQG-LPGRALANSETIWLCNAQCADSKVFSRSLL--AKSASIQTVICFPHL-----DGVIELGVTEL---VPEDPS 189 (656)
Q Consensus 121 sF~~G~G-lpGra~~~g~~~Wl~~~~~~~~~~~~R~~l--a~sagIQTvvciP~~-----~GVvELGSt~~---v~Ed~~ 189 (656)
.|..|+| ..|.++.+|.++.+.+.... +..+.|+.. +...||..++|||+. -|||.+.+... -.+|..
T Consensus 65 ~~~~geGP~l~av~~~g~~v~v~~~~~~-p~~~~~~~~~~~~~~gi~S~l~vPL~~~~~~~GvL~l~~~~~~~f~~~~~~ 143 (509)
T PRK05022 65 RFALEEHPRLEAILRAGDPVRFPADSEL-PDPYDGLIPGVQESLPVHDCMGLPLFVDGRLIGALTLDALDPGQFDAFSDE 143 (509)
T ss_pred ccCCCcchHHHHHHhcCCeEEEecCCCC-CcccccccccccccCCcceEEEEEEEECCEEEEEEEEeeCCCCcCCHHHHH
Confidence 6788898 67999988999988754332 233444322 344589999999985 48999988653 334455
Q ss_pred HHHHHHHHhc
Q 006217 190 LLQHIKASLL 199 (656)
Q Consensus 190 lv~~ik~~F~ 199 (656)
++..+-..+.
T Consensus 144 ~l~~~a~~~a 153 (509)
T PRK05022 144 ELRALAALAA 153 (509)
T ss_pred HHHHHHHHHH
Confidence 6665555443
No 146
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=31.63 E-value=2.8e+02 Score=28.95 Aligned_cols=62 Identities=8% Similarity=0.119 Sum_probs=40.9
Q ss_pred eEEEEEEccCCCC--hHHHHHHHHHccCCeEEEEEeecC--Cc--eEEEEEEEEeCCCcccCHHHHHHHH
Q 006217 586 DVLIEMRCPSREY--ILLDIMDAINNLHLDAYSVVSSNL--DG--VLTLALKSTFRGAAIAPAGIIEQAL 649 (656)
Q Consensus 586 dvlIeI~C~~r~g--lL~~Im~aL~~L~LdV~svqsS~~--dg--~l~~ti~aKv~~~~~~s~~~IkqAL 649 (656)
...++|.|...+. +...+++.|++.++.+.++++-.. ++ .+.+++.++... ....+.|...|
T Consensus 142 ~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~--~~~le~iv~~L 209 (225)
T PRK15385 142 RYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADY--RKTRELIISRI 209 (225)
T ss_pred EEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCc--hhhHHHHHHHH
Confidence 5678899988764 688999999999999999988543 33 344455554332 23444444443
No 147
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A.
Probab=29.48 E-value=67 Score=27.98 Aligned_cols=60 Identities=25% Similarity=0.219 Sum_probs=37.8
Q ss_pred eecCCCCccceeeeCCCcEEeeCC-CcCCCcchhhHHhhhhcCCcEEEEeeeC-----CeEEEecccccccCChhHHH
Q 006217 121 VFSSGQGLPGRALANSETIWLCNA-QCADSKVFSRSLLAKSASIQTVICFPHL-----DGVIELGVTELVPEDPSLLQ 192 (656)
Q Consensus 121 sF~~G~GlpGra~~~g~~~Wl~~~-~~~~~~~~~R~~la~sagIQTvvciP~~-----~GVvELGSt~~v~Ed~~lv~ 192 (656)
.++.+.++.++++.++.+ +.... ...+. .+++.++|||+. -|||.+++...-.=+..-++
T Consensus 49 ~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----------~~~~s~~~vPl~~~~~~~Gvl~~~~~~~~~~~~~d~~ 114 (129)
T PF13492_consen 49 SLPEDDPLIGRALETGEP-VSVPDIDERDF-----------LGIRSLLVVPLRSRDRVIGVLCLDSREPEEFSDEDLQ 114 (129)
T ss_dssp CEETTSHHHHHHHHHTS--EEESTCCC-TT-----------TTTCEEEEEEEEETTEEEEEEEEEECTTCG-SHHHHH
T ss_pred cCCCCccHHHHHHhhCCe-EEecccccccC-----------CCCCEEEEEEEeECCEEEEEEEEEECCCCCCCHHHHH
Confidence 344677888888888886 33322 21111 677899999986 49999988875433333333
No 148
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=27.58 E-value=1.3e+02 Score=24.73 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=27.9
Q ss_pred CCeEEEEEEcc----CCCChHHHHHHHHHccCCeEEEEE
Q 006217 584 EMDVLIEMRCP----SREYILLDIMDAINNLHLDAYSVV 618 (656)
Q Consensus 584 e~dvlIeI~C~----~r~glL~~Im~aL~~L~LdV~svq 618 (656)
++-..|.|.++ ..+|++.+|+.+|.+-++.|..+.
T Consensus 4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 34457788777 379999999999999999998665
No 149
>PRK11898 prephenate dehydratase; Provisional
Probab=27.05 E-value=3e+02 Score=29.35 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=41.2
Q ss_pred EEEEEccC-CCChHHHHHHHHHccCCeEEEEEeecCC-ceEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 006217 588 LIEMRCPS-REYILLDIMDAINNLHLDAYSVVSSNLD-GVLTLALKSTFRGAAIAPAGIIEQALWKI 652 (656)
Q Consensus 588 lIeI~C~~-r~glL~~Im~aL~~L~LdV~svqsS~~d-g~l~~ti~aKv~~~~~~s~~~IkqAL~~v 652 (656)
.|-+..+. ++|.|.+++..+...++.+++..|--.. ...-+.|-+.+.+. ..-..++++|..+
T Consensus 198 slif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~--~~~~~~~~al~~L 262 (283)
T PRK11898 198 SLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGH--IDDVLVAEALKEL 262 (283)
T ss_pred EEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEcc--CCCHHHHHHHHHH
Confidence 34455555 5999999999999999999999887543 22334444444443 2223466666544
No 150
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=26.01 E-value=3.4e+02 Score=30.40 Aligned_cols=59 Identities=10% Similarity=0.037 Sum_probs=44.1
Q ss_pred cCCCChHHHHHHHHHccCCeEEEEEee-cCCceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 006217 594 PSREYILLDIMDAINNLHLDAYSVVSS-NLDGVLTLALKSTFRGAAIAPAGIIEQALWKIAG 654 (656)
Q Consensus 594 ~~r~glL~~Im~aL~~L~LdV~svqsS-~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 654 (656)
++++|.|.+++..|...|+..+...|- ..++..-+.|-..+.+. ..-..+++||..+-.
T Consensus 305 ~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~--~~d~~~~~aL~~l~~ 364 (386)
T PRK10622 305 GQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQAN--LRSAEMQKALKELGE 364 (386)
T ss_pred CCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCC--CCCHHHHHHHHHHHH
Confidence 689999999999999999999999886 44455566666776663 222357777776543
No 151
>PF11619 P53_C: Transcription factor P53 - C terminal domain; InterPro: IPR024631 The p53 tumour suppressor [, , , , ] is a protein found in increased amounts in a wide variety of transformed cells. It is also detectable in many proliferating non-transformed cells, but it is undetectable or present at low levels in resting cells. It is frequently mutated or inactivated in many types of cancer. p53 seems to act as a tumour suppressor in some, but probably not all, tumour types. p53 has been implicated in cell cycle regulation, particularly in the monitoring of genomic DNA integrity prior to replication; for this reason it has been dubbed `guardian of the genome'. p53 is a sequence-specific DNA-binding protein and transcription factor. The structure of p53 comprises 4 domains: an N-terminal transactivation domain; a central DNA-binding domain; an oligomerisation domain; and a C-terminal, basic, regulatory domain [, ]. The structure of the oligomerisation domain consists of a dimer of dimers, each dimer consisting of 2 anti-parallel alpha-helices and an anti-parallel beta-sheet. The sheets lie on opposite sides of the tetramer and the helices form an unusual 4-helix bundle [, ]. While the majority of p53 mutations found in human cancers are located in the DNA-binding domain, some are also found in the oligomerisation domain. This entry represents the C-terminal domain of Drosophila transcription factor p53. While the rest of the protein is quite conserved between the different transcription factors such as p53 and p73, the C-terminal domain is highly divergent. The Drosophila p53 structure is characterised by an additional N-terminal beta-strand and a C-terminal helix [].; PDB: 2RP4_B.
Probab=25.20 E-value=78 Score=26.82 Aligned_cols=34 Identities=32% Similarity=0.525 Sum_probs=26.4
Q ss_pred ceEEEEE-eCCeEEEEEEccCCCChHHHHHHHHHc
Q 006217 576 ADVKVSI-QEMDVLIEMRCPSREYILLDIMDAINN 609 (656)
Q Consensus 576 ~~VeV~i-~e~dvlIeI~C~~r~glL~~Im~aL~~ 609 (656)
.+-+|+. .++|..+-|.||+++-||-.|=-++++
T Consensus 5 ~dW~Vsrt~dGdYrL~itcp~Ke~LlqSIEgmi~~ 39 (71)
T PF11619_consen 5 ADWEVSRTLDGDYRLVITCPKKEWLLQSIEGMIKE 39 (71)
T ss_dssp -S-EEEEETTTCEEEEEEESSHHHHHHHHHHHHHH
T ss_pred ccceeeeccCCceEEEEecCcHHHHHHHHHHHHHH
Confidence 4566774 678999999999999888888777765
No 152
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=22.32 E-value=1.3e+02 Score=36.35 Aligned_cols=60 Identities=12% Similarity=0.181 Sum_probs=48.2
Q ss_pred EEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 006217 587 VLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIAG 654 (656)
Q Consensus 587 vlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 654 (656)
..+||+...|+|+|..|+.+|. ||..+.++|.+..+...+-.+ +. .+-..|.+++.+++.
T Consensus 632 ~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~--~~--~~r~~~~~~~~~~~~ 691 (693)
T PRK00227 632 NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK--PG--FDRATVERDVTRVLA 691 (693)
T ss_pred cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec--Cc--ccHHHHHHHHHHHHh
Confidence 6899999999999999999999 899999999998877666655 21 345667777776653
No 153
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.73 E-value=1.2e+02 Score=26.28 Aligned_cols=37 Identities=3% Similarity=-0.000 Sum_probs=27.5
Q ss_pred CCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEE
Q 006217 595 SREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKST 633 (656)
Q Consensus 595 ~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aK 633 (656)
+.-|.+.+++++|++.|+.+-|.-++.. .+.+.++-+
T Consensus 13 ~evGF~rk~L~I~E~~~is~Eh~PSGID--~~Siii~~~ 49 (76)
T cd04911 13 REVGFGRKLLSILEDNGISYEHMPSGID--DISIIIRDN 49 (76)
T ss_pred chhcHHHHHHHHHHHcCCCEeeecCCCc--cEEEEEEcc
Confidence 3469999999999999999997744332 356666654
No 154
>PRK00907 hypothetical protein; Provisional
Probab=20.89 E-value=3.6e+02 Score=24.23 Aligned_cols=64 Identities=8% Similarity=-0.020 Sum_probs=44.4
Q ss_pred eEEEEEEccCCCChHHHHHHHHHccC----CeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHH
Q 006217 586 DVLIEMRCPSREYILLDIMDAINNLH----LDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWK 651 (656)
Q Consensus 586 dvlIeI~C~~r~glL~~Im~aL~~L~----LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~ 651 (656)
++-|+|--..++++...|++.++.+. ...+.++-|..+.++.+++...+.+. ...+.|-++|..
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats~--eQld~iY~~L~~ 84 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAESR--EQYDAAHQALRD 84 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECCH--HHHHHHHHHHhh
Confidence 34556666677999999999998763 44455566778888888888776652 455566666653
No 155
>PRK09034 aspartate kinase; Reviewed
Probab=20.56 E-value=3.8e+02 Score=30.54 Aligned_cols=67 Identities=10% Similarity=0.107 Sum_probs=42.0
Q ss_pred EEEeCCeEEEEEEc---cCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 006217 580 VSIQEMDVLIEMRC---PSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIA 653 (656)
Q Consensus 580 V~i~e~dvlIeI~C---~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 653 (656)
|.+..+-++|.|.. ...+|++.+|+++|.+.++.|.-+..++.+-.+.+.+. + .......++||+.+
T Consensus 379 I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~Se~~Is~vV~----~---~d~~~av~~LH~~f 448 (454)
T PRK09034 379 LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSSEISIMFGVK----N---EDAEKAVKAIYNAF 448 (454)
T ss_pred EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCCcceEEEEEc----H---HHHHHHHHHHHHHH
Confidence 34445666777753 35689999999999999999987654444433332222 2 22345566666554
No 156
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=20.43 E-value=3.4e+02 Score=30.01 Aligned_cols=51 Identities=8% Similarity=0.199 Sum_probs=37.4
Q ss_pred EEEeCCeEEEEEE---ccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEE
Q 006217 580 VSIQEMDVLIEMR---CPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLAL 630 (656)
Q Consensus 580 V~i~e~dvlIeI~---C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti 630 (656)
|...++-++|.|. -..++|.+.+|+.+|.+.++.|.....+..+..+.+.+
T Consensus 254 I~~~~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~~~Is~~V 307 (401)
T TIGR00656 254 IALRKNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSETSISLTV 307 (401)
T ss_pred EEEECCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCCceEEEEE
Confidence 4456777889888 45679999999999999999998775543333333333
No 157
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.40 E-value=2.8e+02 Score=20.72 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=22.9
Q ss_pred cCCCChHHHHHHHHHccCCeEEEEEee
Q 006217 594 PSREYILLDIMDAINNLHLDAYSVVSS 620 (656)
Q Consensus 594 ~~r~glL~~Im~aL~~L~LdV~svqsS 620 (656)
+..+|.+.+|+++|.+.++.+..+..+
T Consensus 9 ~~~~~~~~~i~~~L~~~~i~i~~i~~~ 35 (61)
T cd04891 9 PDKPGVAAKIFSALAEAGINVDMIVQS 35 (61)
T ss_pred CCCCcHHHHHHHHHHHcCCcEEEEEEc
Confidence 567899999999999999999876543
No 158
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=20.06 E-value=5e+02 Score=29.12 Aligned_cols=67 Identities=7% Similarity=0.018 Sum_probs=46.6
Q ss_pred eCCeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeec--CCceEEEEEEEEeCCCcccCHHHHHHHHHH
Q 006217 583 QEMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSN--LDGVLTLALKSTFRGAAIAPAGIIEQALWK 651 (656)
Q Consensus 583 ~e~dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~--~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~ 651 (656)
.+..+.+++.=|.|||-|.++++.+-..+-+|++.+--- .-+...+.+..++++. ...++|.++|.+
T Consensus 322 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~~--~h~~~i~~~L~~ 390 (409)
T TIGR02079 322 EGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELNDK--EDFAGLLERMAA 390 (409)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCCH--HHHHHHHHHHHH
Confidence 366788999999999999999996666666888877652 2233445555555542 345677777764
Done!