Query 006217
Match_columns 656
No_of_seqs 310 out of 1053
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 19:08:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006217.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006217hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.3 1.6E-12 5.6E-17 111.4 4.5 60 459-518 7-70 (82)
2 1hlo_A Protein (transcription 99.1 2.6E-11 8.9E-16 103.4 4.3 61 457-517 11-76 (80)
3 4h10_B Circadian locomoter out 99.1 5.1E-11 1.7E-15 99.3 5.0 55 458-512 8-66 (71)
4 1nkp_B MAX protein, MYC proto- 99.1 3.5E-11 1.2E-15 103.2 4.1 59 459-517 3-66 (83)
5 1nkp_A C-MYC, MYC proto-oncoge 99.1 7.2E-11 2.5E-15 102.5 4.5 59 458-516 6-70 (88)
6 1an4_A Protein (upstream stimu 99.0 4.7E-11 1.6E-15 97.8 2.2 49 459-507 6-63 (65)
7 4ati_A MITF, microphthalmia-as 99.0 2.3E-10 8E-15 104.4 6.0 57 459-515 28-91 (118)
8 1a0a_A BHLH, protein (phosphat 99.0 6.1E-11 2.1E-15 96.8 0.3 49 460-508 4-62 (63)
9 1nlw_A MAD protein, MAX dimeri 98.9 8.3E-10 2.9E-14 94.2 5.7 58 460-517 3-66 (80)
10 4h10_A ARYL hydrocarbon recept 98.9 2.4E-10 8.2E-15 95.9 1.9 47 459-505 10-63 (73)
11 3u5v_A Protein MAX, transcript 98.8 9.2E-10 3.1E-14 93.1 1.6 56 457-512 4-66 (76)
12 1mdy_A Protein (MYOD BHLH doma 98.4 1.4E-07 4.7E-12 78.1 3.0 52 457-508 11-67 (68)
13 2ql2_B Neurod1, neurogenic dif 98.3 4.4E-07 1.5E-11 73.3 4.4 49 460-508 4-58 (60)
14 4f3l_A Mclock, circadian locom 98.1 1E-06 3.6E-11 93.6 4.5 48 459-506 13-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 97.9 3.9E-06 1.3E-10 90.2 4.0 48 458-505 13-67 (387)
16 2lfh_A DNA-binding protein inh 97.7 1.3E-05 4.3E-10 66.0 1.8 41 465-505 21-67 (68)
17 1zpv_A ACT domain protein; str 97.1 0.0037 1.3E-07 52.7 10.8 67 586-654 5-71 (91)
18 4ath_A MITF, microphthalmia-as 96.8 0.001 3.5E-08 56.8 4.6 42 471-512 8-53 (83)
19 4aya_A DNA-binding protein inh 96.5 0.0027 9.1E-08 55.8 4.8 40 471-510 41-83 (97)
20 1u8s_A Glycine cleavage system 95.6 0.031 1.1E-06 53.8 8.5 66 586-654 6-71 (192)
21 2ko1_A CTR148A, GTP pyrophosph 95.2 0.044 1.5E-06 45.4 7.0 63 586-650 5-67 (88)
22 1f5m_A GAF; CGMP binding, sign 95.1 0.014 4.8E-07 56.0 4.0 73 120-198 92-173 (180)
23 2nyi_A Unknown protein; protei 94.9 0.051 1.8E-06 52.8 7.6 64 586-652 5-72 (195)
24 2nyi_A Unknown protein; protei 94.8 0.07 2.4E-06 51.8 8.3 66 586-654 93-164 (195)
25 1u8s_A Glycine cleavage system 94.2 0.15 5.2E-06 48.9 9.1 67 586-654 93-167 (192)
26 3k2n_A Sigma-54-dependent tran 94.1 0.51 1.7E-05 42.5 12.0 115 9-183 19-142 (177)
27 3dba_A CONE CGMP-specific 3',5 93.7 0.031 1.1E-06 52.5 2.9 75 121-197 82-166 (180)
28 3trc_A Phosphoenolpyruvate-pro 92.9 0.16 5.5E-06 45.3 6.3 61 121-183 72-137 (171)
29 2vjw_A GAF-B, GAF family prote 92.7 0.085 2.9E-06 48.4 4.3 48 121-181 55-107 (149)
30 3e0y_A Conserved domain protei 92.6 0.097 3.3E-06 47.1 4.4 74 121-196 77-158 (181)
31 1vhm_A Protein YEBR; structura 92.6 0.077 2.6E-06 51.9 3.8 74 120-199 87-168 (195)
32 3mmh_A FRMSR, methionine-R-sul 92.5 0.069 2.3E-06 50.8 3.3 72 121-198 77-156 (167)
33 2jhe_A Transcription regulator 91.7 0.39 1.3E-05 44.3 7.5 60 588-652 2-61 (190)
34 3oov_A Methyl-accepting chemot 91.5 0.41 1.4E-05 42.5 7.2 128 9-195 15-153 (169)
35 2e4s_A CAMP and CAMP-inhibited 91.4 0.13 4.6E-06 46.9 3.9 74 120-195 84-167 (189)
36 3ksh_A Putative uncharacterize 90.9 0.16 5.5E-06 48.2 4.0 72 121-198 76-155 (160)
37 3rfb_A Putative uncharacterize 90.6 0.2 6.7E-06 48.2 4.3 74 121-200 77-158 (171)
38 3n0v_A Formyltetrahydrofolate 90.6 1.4 4.6E-05 45.6 10.9 67 586-654 8-76 (286)
39 3hcy_A Putative two-component 90.5 0.63 2.2E-05 41.0 7.3 58 124-183 52-115 (151)
40 3obi_A Formyltetrahydrofolate 90.2 1.6 5.4E-05 45.2 11.1 69 585-654 5-75 (288)
41 3p96_A Phosphoserine phosphata 89.5 0.63 2.2E-05 49.6 7.6 68 585-653 11-78 (415)
42 2w3g_A DOSS, two component sen 89.2 0.31 1.1E-05 42.4 4.2 60 121-183 56-120 (153)
43 2qyb_A Membrane protein, putat 88.9 0.55 1.9E-05 42.7 5.8 73 124-198 70-152 (181)
44 3o1l_A Formyltetrahydrofolate 88.2 2 6.8E-05 44.8 10.1 67 586-653 22-90 (302)
45 3lou_A Formyltetrahydrofolate 87.7 2.7 9.3E-05 43.5 10.7 68 585-653 9-80 (292)
46 3ci6_A Phosphoenolpyruvate-pro 87.5 0.4 1.4E-05 42.1 3.7 61 121-183 74-139 (171)
47 2f1f_A Acetolactate synthase i 86.1 1.4 4.7E-05 42.0 6.8 65 587-654 4-70 (164)
48 1y7p_A Hypothetical protein AF 85.1 1.7 5.9E-05 43.3 7.2 62 586-652 4-70 (223)
49 2zmf_A CAMP and CAMP-inhibited 84.8 0.62 2.1E-05 42.1 3.7 74 121-195 85-167 (189)
50 3nrb_A Formyltetrahydrofolate 83.3 4.7 0.00016 41.6 9.9 67 585-654 6-74 (287)
51 2pc6_A Probable acetolactate s 83.1 1.8 6.1E-05 41.3 6.1 65 587-654 5-71 (165)
52 1ykd_A Adenylate cyclase; GAF 81.3 1.2 4E-05 46.4 4.6 63 120-182 261-331 (398)
53 2fgc_A Acetolactate synthase, 79.5 5.4 0.00019 39.0 8.2 64 587-653 30-95 (193)
54 3ibj_A CGMP-dependent 3',5'-cy 79.1 1 3.6E-05 51.3 3.5 75 120-196 244-329 (691)
55 1mc0_A 3',5'-cyclic nucleotide 76.9 2.1 7.1E-05 43.7 4.7 73 121-195 245-328 (368)
56 1mc0_A 3',5'-cyclic nucleotide 75.6 0.91 3.1E-05 46.4 1.6 74 120-196 74-158 (368)
57 1ykd_A Adenylate cyclase; GAF 75.5 0.98 3.4E-05 47.0 1.8 61 121-181 75-143 (398)
58 3p01_A Two-component response 75.2 1.2 4.2E-05 41.0 2.2 69 125-195 94-170 (184)
59 3o5y_A Sensor protein; GAF dom 74.3 3.2 0.00011 38.6 4.9 74 121-196 54-135 (165)
60 2k2n_A Sensor protein, SYB-CPH 60.9 15 0.0005 33.3 6.3 56 126-182 78-142 (172)
61 2lb5_A Sensor histidine kinase 59.3 15 0.00053 34.1 6.3 72 125-197 107-190 (208)
62 2f06_A Conserved hypothetical 58.3 33 0.0011 30.7 8.1 56 589-651 75-130 (144)
63 3ibj_A CGMP-dependent 3',5'-cy 56.7 3.5 0.00012 47.0 1.5 70 120-193 75-155 (691)
64 3bjc_A CGMP-specific 3',5'-cyc 54.8 2.6 8.8E-05 49.7 0.0 73 121-195 225-310 (878)
65 2dt9_A Aspartokinase; protein- 50.1 56 0.0019 30.2 8.5 54 580-633 10-67 (167)
66 3bjc_A CGMP-specific 3',5'-cyc 49.7 3.5 0.00012 48.6 0.0 60 121-182 407-477 (878)
67 2re1_A Aspartokinase, alpha an 43.0 45 0.0016 30.9 6.6 53 580-632 19-73 (167)
68 2re1_A Aspartokinase, alpha an 41.2 1.1E+02 0.0037 28.2 8.9 65 580-653 97-164 (167)
69 2dtj_A Aspartokinase; protein- 39.8 81 0.0028 29.5 7.9 41 580-620 9-50 (178)
70 2f06_A Conserved hypothetical 34.6 1.5E+02 0.0053 26.1 8.6 41 588-628 8-50 (144)
71 3s1t_A Aspartokinase; ACT doma 34.0 1.7E+02 0.0057 27.6 9.1 54 580-633 10-67 (181)
72 2qmx_A Prephenate dehydratase; 32.0 1.3E+02 0.0045 30.7 8.5 64 589-654 203-267 (283)
73 3ab4_A Aspartokinase; aspartat 30.7 2.3E+02 0.0079 30.1 10.6 54 580-633 258-315 (421)
74 2dtj_A Aspartokinase; protein- 30.3 1.1E+02 0.0038 28.5 7.2 65 580-653 89-156 (178)
75 3ld7_A LIN0431 protein; DUF131 29.7 26 0.00089 30.6 2.4 50 120-171 33-82 (101)
76 2kpp_A LIN0431 protein; soluti 28.6 19 0.00067 32.1 1.4 43 127-171 40-82 (114)
77 1xkm_B Distinctin chain B; por 28.5 43 0.0015 21.8 2.5 20 490-509 3-22 (26)
78 1rwu_A Hypothetical UPF0250 pr 27.8 1.3E+02 0.0046 26.5 6.7 61 586-649 36-99 (109)
79 2oqq_A Transcription factor HY 26.2 22 0.00076 26.3 1.1 21 498-518 3-23 (42)
80 2er8_A Regulatory protein Leu3 26.1 35 0.0012 27.0 2.4 22 497-518 48-69 (72)
81 3luy_A Probable chorismate mut 25.4 3.5E+02 0.012 28.2 10.5 58 595-654 217-275 (329)
82 2l5g_A GPS2 protein, G protein 24.8 43 0.0015 24.2 2.3 31 486-516 3-33 (38)
83 2dt9_A Aspartokinase; protein- 24.0 2.3E+02 0.0078 25.9 8.0 66 579-653 88-156 (167)
84 4esn_A Hypothetical protein; p 23.9 31 0.0011 30.3 1.8 47 129-178 45-91 (104)
85 3mwb_A Prephenate dehydratase; 23.5 2E+02 0.0067 29.9 8.1 64 588-653 203-268 (313)
86 2lqj_A Mg2+ transport protein; 21.2 2.5E+02 0.0085 23.9 7.0 62 586-652 8-74 (94)
87 2qmw_A PDT, prephenate dehydra 21.0 2.3E+02 0.0077 28.7 7.8 64 588-654 188-255 (267)
88 1hwt_C Protein (heme activator 20.3 55 0.0019 26.3 2.5 21 497-517 57-77 (81)
89 4go7_X Aspartokinase; transfer 20.0 2.1E+02 0.0073 27.6 7.1 54 580-633 29-86 (200)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.28 E-value=1.6e-12 Score=111.42 Aligned_cols=60 Identities=23% Similarity=0.396 Sum_probs=55.6
Q ss_pred ccchhhHHHhhH---HHhHHHHHhcCCCC-CCCcccchHHHHHHHHHHHHHHHHHHHhccccCC
Q 006217 459 CEEHISSDKRTE---NEKFMVLRSMVPYI-SEVDKASILSDTIKYLKKLEARVEELESCMYSVD 518 (656)
Q Consensus 459 ~~~h~~~ER~RR---n~~f~~LrslvP~~-~k~dKaSIL~daI~Yik~L~~~v~~Le~~~~~l~ 518 (656)
..+|+.+||+|| |+.|..|++|||.. .|+||++||.+||+||+.|+.+++.|+.++..+.
T Consensus 7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~ 70 (82)
T 1am9_A 7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR 70 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999 99999999999987 8999999999999999999999999999886543
No 2
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.13 E-value=2.6e-11 Score=103.36 Aligned_cols=61 Identities=16% Similarity=0.358 Sum_probs=56.1
Q ss_pred ccccchhhHHHhhH---HHhHHHHHhcCCCC--CCCcccchHHHHHHHHHHHHHHHHHHHhccccC
Q 006217 457 NFCEEHISSDKRTE---NEKFMVLRSMVPYI--SEVDKASILSDTIKYLKKLEARVEELESCMYSV 517 (656)
Q Consensus 457 ~~~~~h~~~ER~RR---n~~f~~LrslvP~~--~k~dKaSIL~daI~Yik~L~~~v~~Le~~~~~l 517 (656)
....+|+..||+|| |..|..|+++||.. .|++|++||..||+||+.|+.++++|+.+++.+
T Consensus 11 ~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 11 DKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999 99999999999975 699999999999999999999999999988654
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.11 E-value=5.1e-11 Score=99.31 Aligned_cols=55 Identities=27% Similarity=0.324 Sum_probs=50.2
Q ss_pred cccchhhHHHhhH---HHhHHHHHhcCCCC-CCCcccchHHHHHHHHHHHHHHHHHHHh
Q 006217 458 FCEEHISSDKRTE---NEKFMVLRSMVPYI-SEVDKASILSDTIKYLKKLEARVEELES 512 (656)
Q Consensus 458 ~~~~h~~~ER~RR---n~~f~~LrslvP~~-~k~dKaSIL~daI~Yik~L~~~v~~Le~ 512 (656)
-..+|..+||+|| |+.|..|++|||.. .|+||++||..||+||+.|+.++.-|+-
T Consensus 8 kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~~ 66 (71)
T 4h10_B 8 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLEH 66 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 3568999999999 99999999999964 6999999999999999999999988763
No 4
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.10 E-value=3.5e-11 Score=103.21 Aligned_cols=59 Identities=17% Similarity=0.335 Sum_probs=53.9
Q ss_pred ccchhhHHHhhH---HHhHHHHHhcCCC--CCCCcccchHHHHHHHHHHHHHHHHHHHhccccC
Q 006217 459 CEEHISSDKRTE---NEKFMVLRSMVPY--ISEVDKASILSDTIKYLKKLEARVEELESCMYSV 517 (656)
Q Consensus 459 ~~~h~~~ER~RR---n~~f~~LrslvP~--~~k~dKaSIL~daI~Yik~L~~~v~~Le~~~~~l 517 (656)
..+|+..||+|| |+.|..|+++||. ..|++|++||..||+||+.|+.++++|+.+++.+
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L 66 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999 9999999999997 4899999999999999999999999998877654
No 5
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.07 E-value=7.2e-11 Score=102.51 Aligned_cols=59 Identities=20% Similarity=0.294 Sum_probs=53.0
Q ss_pred cccchhhHHHhhH---HHhHHHHHhcCCCC---CCCcccchHHHHHHHHHHHHHHHHHHHhcccc
Q 006217 458 FCEEHISSDKRTE---NEKFMVLRSMVPYI---SEVDKASILSDTIKYLKKLEARVEELESCMYS 516 (656)
Q Consensus 458 ~~~~h~~~ER~RR---n~~f~~LrslvP~~---~k~dKaSIL~daI~Yik~L~~~v~~Le~~~~~ 516 (656)
....|+..||+|| |+.|..||.+||.. .|++|++||..||+||+.|+.+.+.|+..++.
T Consensus 6 ~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~ 70 (88)
T 1nkp_A 6 KRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDL 70 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999 99999999999975 69999999999999999999999988766543
No 6
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.04 E-value=4.7e-11 Score=97.80 Aligned_cols=49 Identities=24% Similarity=0.386 Sum_probs=44.9
Q ss_pred ccchhhHHHhhH---HHhHHHHHhcCCCCC------CCcccchHHHHHHHHHHHHHHH
Q 006217 459 CEEHISSDKRTE---NEKFMVLRSMVPYIS------EVDKASILSDTIKYLKKLEARV 507 (656)
Q Consensus 459 ~~~h~~~ER~RR---n~~f~~LrslvP~~~------k~dKaSIL~daI~Yik~L~~~v 507 (656)
..+|+.+||+|| |+.|..|++|||... |++|++||..||+||+.|+.+.
T Consensus 6 r~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 468999999999 999999999999764 7899999999999999999764
No 7
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.02 E-value=2.3e-10 Score=104.44 Aligned_cols=57 Identities=19% Similarity=0.402 Sum_probs=49.3
Q ss_pred ccchhhHHHhhH---HHhHHHHHhcCCCCC----CCcccchHHHHHHHHHHHHHHHHHHHhccc
Q 006217 459 CEEHISSDKRTE---NEKFMVLRSMVPYIS----EVDKASILSDTIKYLKKLEARVEELESCMY 515 (656)
Q Consensus 459 ~~~h~~~ER~RR---n~~f~~LrslvP~~~----k~dKaSIL~daI~Yik~L~~~v~~Le~~~~ 515 (656)
..+|+.+||+|| |+.|..|++|||... |++|++||..||+||+.|+.+++.|+....
T Consensus 28 r~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~ 91 (118)
T 4ati_A 28 KDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 91 (118)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 558999999999 999999999999764 678999999999999999999999987543
No 8
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=98.98 E-value=6.1e-11 Score=96.79 Aligned_cols=49 Identities=18% Similarity=0.339 Sum_probs=43.8
Q ss_pred cchhhHHHhhH---HHhHHHHHhcCCCC-------CCCcccchHHHHHHHHHHHHHHHH
Q 006217 460 EEHISSDKRTE---NEKFMVLRSMVPYI-------SEVDKASILSDTIKYLKKLEARVE 508 (656)
Q Consensus 460 ~~h~~~ER~RR---n~~f~~LrslvP~~-------~k~dKaSIL~daI~Yik~L~~~v~ 508 (656)
.+|..+||+|| |..|..|++|||.. .|..||+||..||+||++|+++++
T Consensus 4 ~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 4 ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 58999999999 99999999999954 556799999999999999997653
No 9
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=98.93 E-value=8.3e-10 Score=94.20 Aligned_cols=58 Identities=21% Similarity=0.212 Sum_probs=52.6
Q ss_pred cchhhHHHhhH---HHhHHHHHhcCCCC---CCCcccchHHHHHHHHHHHHHHHHHHHhccccC
Q 006217 460 EEHISSDKRTE---NEKFMVLRSMVPYI---SEVDKASILSDTIKYLKKLEARVEELESCMYSV 517 (656)
Q Consensus 460 ~~h~~~ER~RR---n~~f~~LrslvP~~---~k~dKaSIL~daI~Yik~L~~~v~~Le~~~~~l 517 (656)
..|+..||+|| |..|..||++||.. .|..|++||..|++||+.|+.+.+.|+.+++.+
T Consensus 3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L 66 (80)
T 1nlw_A 3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQL 66 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999 99999999999965 677889999999999999999999999887644
No 10
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=98.92 E-value=2.4e-10 Score=95.90 Aligned_cols=47 Identities=30% Similarity=0.405 Sum_probs=43.3
Q ss_pred ccchhhHHHhhH---HHhHHHHHhcCCCC----CCCcccchHHHHHHHHHHHHH
Q 006217 459 CEEHISSDKRTE---NEKFMVLRSMVPYI----SEVDKASILSDTIKYLKKLEA 505 (656)
Q Consensus 459 ~~~h~~~ER~RR---n~~f~~LrslvP~~----~k~dKaSIL~daI~Yik~L~~ 505 (656)
..+|..+||+|| |+.|..|++|||.. .|+||++||..||+||+.|+.
T Consensus 10 R~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 10 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 458999999999 99999999999964 799999999999999999863
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=98.80 E-value=9.2e-10 Score=93.05 Aligned_cols=56 Identities=23% Similarity=0.299 Sum_probs=45.1
Q ss_pred ccccchhhHHHhhH---HHhHHHHHhcCCCC---CCC-cccchHHHHHHHHHHHHHHHHHHHh
Q 006217 457 NFCEEHISSDKRTE---NEKFMVLRSMVPYI---SEV-DKASILSDTIKYLKKLEARVEELES 512 (656)
Q Consensus 457 ~~~~~h~~~ER~RR---n~~f~~LrslvP~~---~k~-dKaSIL~daI~Yik~L~~~v~~Le~ 512 (656)
+....|+..||+|| |+.|..||.+||.. .|. .|++||..||+||+.|++++++++.
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34568999999999 99999999999953 343 4667999999999999999998874
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.37 E-value=1.4e-07 Score=78.10 Aligned_cols=52 Identities=23% Similarity=0.362 Sum_probs=45.7
Q ss_pred ccccchhhHHHhhH---HHhHHHHHhcCCCC--CCCcccchHHHHHHHHHHHHHHHH
Q 006217 457 NFCEEHISSDKRTE---NEKFMVLRSMVPYI--SEVDKASILSDTIKYLKKLEARVE 508 (656)
Q Consensus 457 ~~~~~h~~~ER~RR---n~~f~~LrslvP~~--~k~dKaSIL~daI~Yik~L~~~v~ 508 (656)
.....|...||+|+ |+.|..||.+||.. .|..|+.||..||+||..|+..++
T Consensus 11 ~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 11 DRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 34567999999999 99999999999964 688899999999999999997653
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.31 E-value=4.4e-07 Score=73.30 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=43.7
Q ss_pred cchhhHHHhhH---HHhHHHHHhcCCCC---CCCcccchHHHHHHHHHHHHHHHH
Q 006217 460 EEHISSDKRTE---NEKFMVLRSMVPYI---SEVDKASILSDTIKYLKKLEARVE 508 (656)
Q Consensus 460 ~~h~~~ER~RR---n~~f~~LrslvP~~---~k~dKaSIL~daI~Yik~L~~~v~ 508 (656)
..|...||+|+ |+-|..||.+||.. .|..|+.||..||+||+.|+..++
T Consensus 4 ~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 4 MKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 46889999999 99999999999975 577899999999999999998764
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.15 E-value=1e-06 Score=93.60 Aligned_cols=48 Identities=27% Similarity=0.419 Sum_probs=39.4
Q ss_pred ccchhhHHHhhH---HHhHHHHHhcCC-CCCCCcccchHHHHHHHHHHHHHH
Q 006217 459 CEEHISSDKRTE---NEKFMVLRSMVP-YISEVDKASILSDTIKYLKKLEAR 506 (656)
Q Consensus 459 ~~~h~~~ER~RR---n~~f~~LrslvP-~~~k~dKaSIL~daI~Yik~L~~~ 506 (656)
..+|+.+||+|| |..|..|++||| ...|+||++||..||.|||.|+..
T Consensus 13 ~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 13 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 557999999999 999999999999 568999999999999999999754
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=97.94 E-value=3.9e-06 Score=90.21 Aligned_cols=48 Identities=29% Similarity=0.387 Sum_probs=44.3
Q ss_pred cccchhhHHHhhH---HHhHHHHHhcCC----CCCCCcccchHHHHHHHHHHHHH
Q 006217 458 FCEEHISSDKRTE---NEKFMVLRSMVP----YISEVDKASILSDTIKYLKKLEA 505 (656)
Q Consensus 458 ~~~~h~~~ER~RR---n~~f~~LrslvP----~~~k~dKaSIL~daI~Yik~L~~ 505 (656)
...+|..+||+|| |+.|..|++||| ...|+||+|||..||.|||.|+.
T Consensus 13 ~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 13 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred hcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhc
Confidence 3568999999999 999999999999 57899999999999999999874
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=97.66 E-value=1.3e-05 Score=66.00 Aligned_cols=41 Identities=24% Similarity=0.428 Sum_probs=35.8
Q ss_pred HHHhhH---HHhHHHHHhcCCCC---CCCcccchHHHHHHHHHHHHH
Q 006217 465 SDKRTE---NEKFMVLRSMVPYI---SEVDKASILSDTIKYLKKLEA 505 (656)
Q Consensus 465 ~ER~RR---n~~f~~LrslvP~~---~k~dKaSIL~daI~Yik~L~~ 505 (656)
.||+|+ |+-|..||.+||.. .|..|+-||.-||+||..||.
T Consensus 21 rER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 21 EPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 467776 99999999999975 677888999999999999984
No 17
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.11 E-value=0.0037 Score=52.67 Aligned_cols=67 Identities=12% Similarity=0.119 Sum_probs=58.5
Q ss_pred eEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 006217 586 DVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIAG 654 (656)
Q Consensus 586 dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 654 (656)
.+.|.|.|+.|+|++.+|..+|.+.|..|.+++....++.+...+...+.+ ......|.++|.++..
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~--~~~l~~l~~~L~~~~~ 71 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDE--KQDFTYLRNEFEAFGQ 71 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS--CCCHHHHHHHHHHHHH
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCC--CCCHHHHHHHHHHHHH
Confidence 478999999999999999999999999999998887778888888888765 3588999999987653
No 18
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=96.82 E-value=0.001 Score=56.76 Aligned_cols=42 Identities=21% Similarity=0.483 Sum_probs=36.9
Q ss_pred HHhHHHHHhcCCCC----CCCcccchHHHHHHHHHHHHHHHHHHHh
Q 006217 471 NEKFMVLRSMVPYI----SEVDKASILSDTIKYLKKLEARVEELES 512 (656)
Q Consensus 471 n~~f~~LrslvP~~----~k~dKaSIL~daI~Yik~L~~~v~~Le~ 512 (656)
|.++..|..|||.. .|..|.+||.-|++||+.|++.++.+..
T Consensus 8 N~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e 53 (83)
T 4ath_A 8 NDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD 53 (83)
T ss_dssp HHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999964 5789999999999999999887776654
No 19
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=96.46 E-value=0.0027 Score=55.77 Aligned_cols=40 Identities=30% Similarity=0.547 Sum_probs=35.2
Q ss_pred HHhHHHHHhcCCCC---CCCcccchHHHHHHHHHHHHHHHHHH
Q 006217 471 NEKFMVLRSMVPYI---SEVDKASILSDTIKYLKKLEARVEEL 510 (656)
Q Consensus 471 n~~f~~LrslvP~~---~k~dKaSIL~daI~Yik~L~~~v~~L 510 (656)
|+-|..||.+||.. .|.-|.-+|.-||+||+.|+.-+++-
T Consensus 41 N~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~ 83 (97)
T 4aya_A 41 NDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSH 83 (97)
T ss_dssp HHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999964 56778889999999999999888653
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=95.63 E-value=0.031 Score=53.82 Aligned_cols=66 Identities=11% Similarity=0.038 Sum_probs=54.7
Q ss_pred eEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 006217 586 DVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIAG 654 (656)
Q Consensus 586 dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 654 (656)
.+.|.|.|+.|+|++.+|..+|.+.|+.|+.++..+..|.+.+.+.+.... .....|+++|.++..
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~---~~~~~l~~~L~~~~~ 71 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP---SNITRVETTLPLLGQ 71 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH---HHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC---CCHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999988778777777665432 356788888887653
No 21
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=95.22 E-value=0.044 Score=45.35 Aligned_cols=63 Identities=14% Similarity=0.145 Sum_probs=47.6
Q ss_pred eEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHH
Q 006217 586 DVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALW 650 (656)
Q Consensus 586 dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~ 650 (656)
.+.|+|.++.|+|+|.+|..+|.+.++.|.++.....++.+.+.|...+.+. ....++.++|+
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~~--~~l~~l~~~L~ 67 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKNT--DKLTTLMDKLR 67 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESSH--HHHHHHHHHHT
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECCH--HHHHHHHHHHh
Confidence 4678999999999999999999999999999988876665556666665432 33445555554
No 22
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=95.07 E-value=0.014 Score=56.00 Aligned_cols=73 Identities=19% Similarity=0.297 Sum_probs=55.7
Q ss_pred eeecCCCCccceeeeCCCcEEeeCCCcCCCcchhhHHhhhhcCCcEEEEeeeCC------eEEEeccccc---ccCChhH
Q 006217 120 FVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLD------GVIELGVTEL---VPEDPSL 190 (656)
Q Consensus 120 ~sF~~G~GlpGra~~~g~~~Wl~~~~~~~~~~~~R~~la~sagIQTvvciP~~~------GVvELGSt~~---v~Ed~~l 190 (656)
..|+.|+|+.|+|+.+|+++.+.+....+ |+. +...+++.++|||+.. |||++.+.+. -.+|..+
T Consensus 92 ~~i~~g~Gi~G~aa~~g~~v~v~Dv~~dp-----~~~-~~~~~~~S~l~vPi~~~~g~viGVL~l~s~~~~~F~~~d~~~ 165 (180)
T 1f5m_A 92 QMIQFGKGVCGTAASTKETQIVPDVNKYP-----GHI-ACDGETKSEIVVPIISNDGKTLGVIDIDCLDYEGFDHVDKEF 165 (180)
T ss_dssp SEEETTSHHHHHHHHHTSCEEESCGGGST-----TCC-CSSTTCCEEEEEEEECTTSCEEEEEEEEESSTTCCCHHHHHH
T ss_pred eeecCCCcchhhhhhcCCEEEeCCcccCc-----ccc-ccCcccceEEEEEEEcCCCeEEEEEEeccCCCCCcCHHHHHH
Confidence 36899999999999999999998876433 332 4567899999999976 9999999764 2335566
Q ss_pred HHHHHHHh
Q 006217 191 LQHIKASL 198 (656)
Q Consensus 191 v~~ik~~F 198 (656)
++.+-...
T Consensus 166 L~~la~~~ 173 (180)
T 1f5m_A 166 LEKLAKLI 173 (180)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665443
No 23
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=94.92 E-value=0.051 Score=52.75 Aligned_cols=64 Identities=17% Similarity=0.194 Sum_probs=51.1
Q ss_pred eEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccC----HHHHHHHHHHH
Q 006217 586 DVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAP----AGIIEQALWKI 652 (656)
Q Consensus 586 dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s----~~~IkqAL~~v 652 (656)
.+.|.|.|+.|+|++.+|..+|.++|+.|+.++..+..|.|.+.+...... .. ...|+++|..+
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~---~~~~~~~~~l~~~L~~~ 72 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNA---KDGKLIQSALESALPGF 72 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS---SSSHHHHHHHHHHSTTC
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecC---ccchhHHHHHHHHHHHH
Confidence 478999999999999999999999999999999988777776666665543 23 56677666543
No 24
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=94.85 E-value=0.07 Score=51.81 Aligned_cols=66 Identities=11% Similarity=0.111 Sum_probs=54.2
Q ss_pred eEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCC------ceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 006217 586 DVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLD------GVLTLALKSTFRGAAIAPAGIIEQALWKIAG 654 (656)
Q Consensus 586 dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~d------g~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 654 (656)
.+.|+|.|+.|+|++.+|-..|-++|+.|+.++..+.. ++|++.+...+.. ... .+|+++|..+..
T Consensus 93 ~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~--~~~-~~l~~~l~~~a~ 164 (195)
T 2nyi_A 93 EYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPF--PLY-QEVVTALSRVEE 164 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEG--GGH-HHHHHHHHHHHH
T ss_pred EEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCC--Ccc-HHHHHHHHHHHH
Confidence 47899999999999999999999999999999887654 7777777766553 245 889999887653
No 25
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=94.25 E-value=0.15 Score=48.94 Aligned_cols=67 Identities=4% Similarity=0.047 Sum_probs=53.9
Q ss_pred eEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecC--------CceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 006217 586 DVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNL--------DGVLTLALKSTFRGAAIAPAGIIEQALWKIAG 654 (656)
Q Consensus 586 dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~--------dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 654 (656)
...|.|.|+.|+|++.+|.++|.+.+++|..+...+. .++|...+...+.. ..+...++++|..+..
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~--~~~~~~l~~~l~~~~~ 167 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDS--GCNLMQLQEEFDALCT 167 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECT--TSCHHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCCC--CCCHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999887653 35777666665543 4688999999987654
No 26
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=94.15 E-value=0.51 Score=42.52 Aligned_cols=115 Identities=10% Similarity=-0.026 Sum_probs=75.4
Q ss_pred cchhHHHHHHHHHhhcCCCcEEEEeeecCCCCCccEEeccceecCCcccccccccccCCchhhhhHHHHHHHHHHHhhhc
Q 006217 9 EGVPEILRKQLAVAVRSIQWSYAIFWSLSAAQQGVLEWGDGYYNGDIKTRKTMQAMELTPDKIGLQRSKQLRELYESLLK 88 (656)
Q Consensus 9 ~~~~~~Lq~~L~~~~~~~~WtYAiFWq~s~~~~gvL~WgDGyy~g~~k~~~~~~~~e~~~~~~~~~r~~~lreL~~sl~~ 88 (656)
-.+.+.|+..++.+++-.+..++.+|-+......+..|..+|..+..
T Consensus 19 ~d~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~--------------------------------- 65 (177)
T 3k2n_A 19 RDPQELFRTVTDKLRLLFAFDSAVIITIDRERREASVFFEMLRFELP--------------------------------- 65 (177)
T ss_dssp CSHHHHHHHHHHHHTTTCCCSEEEEEEEETTTTEEEEEEEECSSCCC---------------------------------
T ss_pred cCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCeEEeEEecccCCCC---------------------------------
Confidence 35678888889999898999999888877433333344333322110
Q ss_pred cccccccCCCCCCCCCCCCCcchheeeeeeeeeecCCCCccceeeeCCCcEEeeCCCcCC-Ccchh-hH--HhhhhcCCc
Q 006217 89 GESELAYKRPSAALSPEDLTDAEWYYLVCMSFVFSSGQGLPGRALANSETIWLCNAQCAD-SKVFS-RS--LLAKSASIQ 164 (656)
Q Consensus 89 g~~~~~~~~~~~al~~edltd~Ewfyl~sms~sF~~G~GlpGra~~~g~~~Wl~~~~~~~-~~~~~-R~--~la~sagIQ 164 (656)
..+. ...++.+.|+.|+++.++.++.+ +....+ ...+. +. ......|++
T Consensus 66 ----------------~~~~----------~~~~~~~~~~~~~v~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (177)
T 3k2n_A 66 ----------------EQLR----------HQTRSIAGTWLEGHLDDRTVTVA-SIARDIPSFGADGAPLLWTLHELGMR 118 (177)
T ss_dssp ----------------STTC----------CSEEECTTSGGGGGTTCCSCEEE-ETTTTCTTTTTTTCHHHHHHHHHTCC
T ss_pred ----------------chhh----------cccCCccccHHHHHhccCCceEe-chhhcccccCCcchhHHHHHHHcCce
Confidence 0000 12456788999999999999998 443322 22222 22 235678999
Q ss_pred EEEEeeeC-----CeEEEeccccc
Q 006217 165 TVICFPHL-----DGVIELGVTEL 183 (656)
Q Consensus 165 TvvciP~~-----~GVvELGSt~~ 183 (656)
.++|||+. -|||.+++...
T Consensus 119 s~l~vPL~~~~~~iGvL~l~~~~~ 142 (177)
T 3k2n_A 119 QIVLSPLRSGGRVIGFLSFVSAEE 142 (177)
T ss_dssp EEEEEEEEETTEEEEEEEEEESSC
T ss_pred EEEEEEEEECCEEEEEEEEEECCC
Confidence 99999986 39999998654
No 27
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=93.70 E-value=0.031 Score=52.54 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=52.3
Q ss_pred eecCCCCccceeeeCCCcEEeeCCCcCCCcchhhHH-hhhhcCCcEEEEeeeCC-----eEEEecccccc----cCChhH
Q 006217 121 VFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSL-LAKSASIQTVICFPHLD-----GVIELGVTELV----PEDPSL 190 (656)
Q Consensus 121 sF~~G~GlpGra~~~g~~~Wl~~~~~~~~~~~~R~~-la~sagIQTvvciP~~~-----GVvELGSt~~v----~Ed~~l 190 (656)
.++.|+|+.|+++.+|+++.+.++...+ .|.+.. ......++.++|+|+.. |||+|.+...- .+|..+
T Consensus 82 ~~~~~~gi~g~v~~tg~~v~i~d~~~d~--~f~~~~~~~~~~~~~S~L~vPl~~~~~viGVL~l~n~~~~~~Ft~~d~~l 159 (180)
T 3dba_A 82 VFPLDIGIAGWVAHTKKFFNIPDVKKNN--HFSDYLDKKTGYTTVNMMAIPITQGKEVLAVVMALNKLNASEFSKEDEEV 159 (180)
T ss_dssp EECTTSSHHHHHHHHTCCEEESCGGGCT--TCCCHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEESSSSSCCHHHHHH
T ss_pred eeeCCCCHHHHHHHhCCEEEecCCCCCc--ccChhhccccCccccEEEEEEeccCCEEEEEEEEEeCCCCCCCCHHHHHH
Confidence 5788999999999999999998766432 233322 22234679999999963 99999887532 245556
Q ss_pred HHHHHHH
Q 006217 191 LQHIKAS 197 (656)
Q Consensus 191 v~~ik~~ 197 (656)
++.+-..
T Consensus 160 L~~lA~~ 166 (180)
T 3dba_A 160 FKKYLNF 166 (180)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555443
No 28
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=92.92 E-value=0.16 Score=45.30 Aligned_cols=61 Identities=18% Similarity=0.225 Sum_probs=45.3
Q ss_pred eecCCCCccceeeeCCCcEEeeCCCcCCCcchhhHHhhhhcCCcEEEEeeeC-----CeEEEeccccc
Q 006217 121 VFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHL-----DGVIELGVTEL 183 (656)
Q Consensus 121 sF~~G~GlpGra~~~g~~~Wl~~~~~~~~~~~~R~~la~sagIQTvvciP~~-----~GVvELGSt~~ 183 (656)
.++.|.|+.|+++.+++++++.+....+. |.........|++.++|||+. -|||.+++.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~~~~~~~ 137 (171)
T 3trc_A 72 RLKFGEGLIGLVGEREEPINLADAPLHPA--YKHRPELGEEDYHGFLGIPIIEQGELLGILVIQQLES 137 (171)
T ss_dssp EEETTCHHHHHHHHHTSCEEESCGGGSTT--CCCCGGGCCCCCCEEEEEEEEETTEEEEEEEEEESSS
T ss_pred eecCCCChhhHHHhcCCeEEeCCCCCCCc--ccccccCCcccccEEEEEeEEECCEEEEEEEEeecCC
Confidence 56778899999999999999976554221 111122245899999999986 39999998754
No 29
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=92.74 E-value=0.085 Score=48.39 Aligned_cols=48 Identities=13% Similarity=0.059 Sum_probs=41.0
Q ss_pred eecCCCCccceeeeCCCcEEeeCCCcCCCcchhhHHhhhhcCCcEEEEeeeC-----CeEEEeccc
Q 006217 121 VFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHL-----DGVIELGVT 181 (656)
Q Consensus 121 sF~~G~GlpGra~~~g~~~Wl~~~~~~~~~~~~R~~la~sagIQTvvciP~~-----~GVvELGSt 181 (656)
.|+.|.|+.|+++.+|+++++.+....+ |+..++|||+. -|||.++..
T Consensus 55 ~~~~~~g~~g~v~~~g~~v~v~d~~~d~-------------~~~s~l~vPL~~~~~~~GvL~l~~~ 107 (149)
T 2vjw_A 55 AIPVQDNAIGQAFRDRAPRRLDVLDGPG-------------LGGPALVLPLRATDTVAGVLVAVQG 107 (149)
T ss_dssp EEESSSSHHHHHHHHCCCEEESCCCTTS-------------CEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred ccCCCCCHHHHHhhcCceEEecCcccCC-------------CCCeEEEEEEccCCeEEEEEEEeeC
Confidence 5778999999999999999998866322 78999999986 399999886
No 30
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=92.59 E-value=0.097 Score=47.12 Aligned_cols=74 Identities=19% Similarity=0.275 Sum_probs=47.8
Q ss_pred eecCCCCccceeeeCCCcEEeeCCCcCCCcchhhHHhhhhcCCcEEEEeeeC-----CeEEEecccccc---cCChhHHH
Q 006217 121 VFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHL-----DGVIELGVTELV---PEDPSLLQ 192 (656)
Q Consensus 121 sF~~G~GlpGra~~~g~~~Wl~~~~~~~~~~~~R~~la~sagIQTvvciP~~-----~GVvELGSt~~v---~Ed~~lv~ 192 (656)
.++.|.|+.|+++.+++++++.+....+. |.........|++.++|||+. -|||.+++.+.- .+|..+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~i~d~~~~~~--~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~~~~~~~~~f~~~~~~~l~ 154 (181)
T 3e0y_A 77 RIKIGDGITGSVARDGQYISLSRASQDPR--YRYFPELQEEKYNSMLSFPIGDKKEVYGVINLNTTSIRSFHEDEIYFVS 154 (181)
T ss_dssp EEETTTSSHHHHHHHCCCEEEEEECCCCC--C---------CEEEEEEEEEECSSCEEEEEEEEESSCCCCCHHHHHHHH
T ss_pred cccCCCCeeeehhhcCCeEEecCcccCcc--ccccccccccCcceEEEEEEEeCCeEEEEEEEeeCCCCCCCHHHHHHHH
Confidence 56788999999999999999976554222 222223346799999999986 389999988632 23444554
Q ss_pred HHHH
Q 006217 193 HIKA 196 (656)
Q Consensus 193 ~ik~ 196 (656)
.+-.
T Consensus 155 ~la~ 158 (181)
T 3e0y_A 155 IIAN 158 (181)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 31
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=92.55 E-value=0.077 Score=51.85 Aligned_cols=74 Identities=24% Similarity=0.337 Sum_probs=55.2
Q ss_pred eeecCCCCccceeeeCCCcEEeeCCCcCCCcchhhHHhhhhcCCcEEEEeeeC-----CeEEEecccccc---cCChhHH
Q 006217 120 FVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHL-----DGVIELGVTELV---PEDPSLL 191 (656)
Q Consensus 120 ~sF~~G~GlpGra~~~g~~~Wl~~~~~~~~~~~~R~~la~sagIQTvvciP~~-----~GVvELGSt~~v---~Ed~~lv 191 (656)
..|+.|+|+.|+|+.+|+++.+.+....+ |. .+...+.+.++|||+. -|||++.+.+.- .+|..++
T Consensus 87 ~~i~~GeGi~G~aa~tg~~i~V~Dv~~~p-----~~-~~~~~~~~S~l~VPI~~~g~viGVL~i~s~~~~~F~e~d~~~L 160 (195)
T 1vhm_A 87 VRIPVGRGVCGTAVARNQVQRIEDVHVFD-----GH-IACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGL 160 (195)
T ss_dssp SEEETTSHHHHHHHHHTSCEEESCTTTCT-----TC-CCSCCCCSEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHHH
T ss_pred eEecCCCChHHHHHhcCCEEEECCcccCc-----ch-hhcCCCccEEEEEeEeECCEEEEEEEecCCCCCCCCHHHHHHH
Confidence 36889999999999999999998877532 21 2234578999999986 299999997642 3466677
Q ss_pred HHHHHHhc
Q 006217 192 QHIKASLL 199 (656)
Q Consensus 192 ~~ik~~F~ 199 (656)
+.+-....
T Consensus 161 ~~lA~~ia 168 (195)
T 1vhm_A 161 RQLVAQLE 168 (195)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76665543
No 32
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=92.49 E-value=0.069 Score=50.84 Aligned_cols=72 Identities=22% Similarity=0.313 Sum_probs=54.1
Q ss_pred eecCCCCccceeeeCCCcEEeeCCCcCCCcchhhHHhhhhcCCcEEEEeeeC-----CeEEEecccccc---cCChhHHH
Q 006217 121 VFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHL-----DGVIELGVTELV---PEDPSLLQ 192 (656)
Q Consensus 121 sF~~G~GlpGra~~~g~~~Wl~~~~~~~~~~~~R~~la~sagIQTvvciP~~-----~GVvELGSt~~v---~Ed~~lv~ 192 (656)
.|+.|+|+.|+|+.+|+++.+.+....+.. ++...+++..+|||+. =|||.+.+.+.- .+|..|++
T Consensus 77 ~i~~geGi~G~v~~~g~~~~v~Dv~~~p~~------~~~~~~~~S~i~vPi~~~g~viGVL~i~s~~~~~F~~~d~~~L~ 150 (167)
T 3mmh_A 77 RIPFGRGVCGQAWAKGGTVVVGDVDAHPDH------IACSSLSRSEIVVPLFSDGRCIGVLDADSEHLAQFDETDALYLG 150 (167)
T ss_dssp EEETTSHHHHHHHHHTSCEEESCGGGSTTC------CCSSTTCCEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHHHH
T ss_pred EeccCCChHHHHHhCCcEEEECCcccCcch------hhcCccCCeEEEEEeccCCEEEEEEEEecCCCCCCCHHHHHHHH
Confidence 789999999999999999999987754321 1234688999999986 399999986542 34566666
Q ss_pred HHHHHh
Q 006217 193 HIKASL 198 (656)
Q Consensus 193 ~ik~~F 198 (656)
.+-...
T Consensus 151 ~lA~~l 156 (167)
T 3mmh_A 151 ELAKIL 156 (167)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665544
No 33
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=91.68 E-value=0.39 Score=44.26 Aligned_cols=60 Identities=13% Similarity=0.215 Sum_probs=43.5
Q ss_pred EEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 006217 588 LIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKI 652 (656)
Q Consensus 588 lIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~v 652 (656)
-|+|.|..|.|+|.+|+++|.+.++++..+++... |.+. .++.....-....+.++|+++
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~-g~i~----~~~~~~~~~~~~~L~~~l~~i 61 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-GRIY----LNFAELEFESFSSLMAEIRRI 61 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT-TEEE----EEECCCCHHHHHHHHHHHHHS
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC-CEEE----EEEEeCCHHHHHHHHHHHHcC
Confidence 48899999999999999999999999999999766 6533 223322222345555555554
No 34
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=91.53 E-value=0.41 Score=42.47 Aligned_cols=128 Identities=9% Similarity=0.066 Sum_probs=79.9
Q ss_pred cchhHHHHHHHHHhhcCCCcEEEEeeecCCCCCccEEeccceecCCcccccccccccCCchhhhhHHHHHHHHHHHhhhc
Q 006217 9 EGVPEILRKQLAVAVRSIQWSYAIFWSLSAAQQGVLEWGDGYYNGDIKTRKTMQAMELTPDKIGLQRSKQLRELYESLLK 88 (656)
Q Consensus 9 ~~~~~~Lq~~L~~~~~~~~WtYAiFWq~s~~~~gvL~WgDGyy~g~~k~~~~~~~~e~~~~~~~~~r~~~lreL~~sl~~ 88 (656)
..+.+.|+..++.+++-.++.++.+|.+. +..+.|...-++-...
T Consensus 15 ~~~~~~l~~~~~~~~~~~~~~~~~i~l~d-~~~~~l~~~~~~g~~~---------------------------------- 59 (169)
T 3oov_A 15 IDVDEVLRLCAEGLHDVLGYERVNILMAD-TARTSLSFVAAVGTAD---------------------------------- 59 (169)
T ss_dssp CCHHHHHHHHHHHHHHTTCCSEEEEEEEC-TTSSEEEEEEEESCSS----------------------------------
T ss_pred cCHHHHHHHHHHHHHHhhCCceEEEEEEe-CCCCeEEEEEEeCchh----------------------------------
Confidence 46778899999999999999999999877 3333333211111000
Q ss_pred cccccccCCCCCCCCCCCCCcchheeeeeeeeeecCCCCccceeeeCCCcEEeeCCCcCCCcchhh--HHhhhhcCCcEE
Q 006217 89 GESELAYKRPSAALSPEDLTDAEWYYLVCMSFVFSSGQGLPGRALANSETIWLCNAQCADSKVFSR--SLLAKSASIQTV 166 (656)
Q Consensus 89 g~~~~~~~~~~~al~~edltd~Ewfyl~sms~sF~~G~GlpGra~~~g~~~Wl~~~~~~~~~~~~R--~~la~sagIQTv 166 (656)
+.+ ..+.+.+..|.|+.|+++.+++++++.+....+.....+ .......|++.+
T Consensus 60 ----------------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~s~ 115 (169)
T 3oov_A 60 ----------------FNP--------AGVVLPLDQRGGVITKCFTDRQVYMIDDVSAYPTDFRLQSPYDAIRALRSKSF 115 (169)
T ss_dssp ----------------CCC--------TTCEEESSGGGHHHHHHHHHTCCEEESCGGGSCGGGSCCTTGGGCGGGCCSSE
T ss_pred ----------------hhh--------hcccCCcccccchHHHHHhcCCCEEeccccchhhhhhccccHHHHHhcCcCcE
Confidence 000 011122333789999999999999998765443222121 123455789999
Q ss_pred EEeeeC-----CeEEEecccccc----cCChhHHHHHH
Q 006217 167 ICFPHL-----DGVIELGVTELV----PEDPSLLQHIK 195 (656)
Q Consensus 167 vciP~~-----~GVvELGSt~~v----~Ed~~lv~~ik 195 (656)
+|+|+. -|||.+++...- .+|..+++.+-
T Consensus 116 l~vPl~~~~~~iGvl~~~~~~~~~~f~~~d~~~l~~~a 153 (169)
T 3oov_A 116 VICPIVVKGEAIGVFAVDNRSSRRSLNDTDVDTIKLFA 153 (169)
T ss_dssp EEEEEEETTEEEEEEEEECTTSSSCCCHHHHHHHHHHH
T ss_pred EEEEEEeCCcEEEEEEEEccccCCCCCHHHHHHHHHHH
Confidence 999986 399999986432 33455555544
No 35
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=91.42 E-value=0.13 Score=46.87 Aligned_cols=74 Identities=19% Similarity=0.309 Sum_probs=52.6
Q ss_pred eeecCCCCccceeeeCCCcEEeeCCCcCCCcchhh-HHhhhhcCCcEEEEeeeC-----CeEEEecccccc----cCChh
Q 006217 120 FVFSSGQGLPGRALANSETIWLCNAQCADSKVFSR-SLLAKSASIQTVICFPHL-----DGVIELGVTELV----PEDPS 189 (656)
Q Consensus 120 ~sF~~G~GlpGra~~~g~~~Wl~~~~~~~~~~~~R-~~la~sagIQTvvciP~~-----~GVvELGSt~~v----~Ed~~ 189 (656)
..|+.|.|+.|+++.+|+++++.+....+ .|.+ .......+++.++|||+. -|||.+++...- .+|..
T Consensus 84 ~~~~~~~~~~~~v~~~~~~~~i~d~~~~~--~~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~l~~~~~~~~f~~~d~~ 161 (189)
T 2e4s_A 84 IRFSIEKGIAGQVARTGEVLNIPDAYADP--RFNREVDLYTGYTTRNILCMPIVSRGSVIGVVQMVNKISGSAFSKTDEN 161 (189)
T ss_dssp CEEETTSHHHHHHHHHCCCEEESCGGGST--TCCTHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEETTSSSCCHHHHH
T ss_pred eEeeCCCcHHHHHHHhCCEEEecCCCcCc--ccChhhccccCCccceEEEEEeccCCeEEEEEEEEeCCCCCCCCHHHHH
Confidence 36788999999999999999998765432 2222 223345789999999986 399999988643 24555
Q ss_pred HHHHHH
Q 006217 190 LLQHIK 195 (656)
Q Consensus 190 lv~~ik 195 (656)
|++.+-
T Consensus 162 ll~~la 167 (189)
T 2e4s_A 162 NFKMFA 167 (189)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 36
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=90.93 E-value=0.16 Score=48.16 Aligned_cols=72 Identities=19% Similarity=0.278 Sum_probs=54.3
Q ss_pred eecCCCCccceeeeCCCcEEeeCCCcCCCcchhhHHhhhhcCCcEEEEeeeC-----CeEEEecccccc---cCChhHHH
Q 006217 121 VFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHL-----DGVIELGVTELV---PEDPSLLQ 192 (656)
Q Consensus 121 sF~~G~GlpGra~~~g~~~Wl~~~~~~~~~~~~R~~la~sagIQTvvciP~~-----~GVvELGSt~~v---~Ed~~lv~ 192 (656)
.++.|+|+.|+|+.+|+++-+.+....+.. .+...+.+..+|||+. =|||.+.|.+.- .+|..|++
T Consensus 76 ri~~GeGv~G~aa~~~~~i~V~Dv~~~p~~------i~~~~~~~Sei~VPI~~~g~viGVL~i~s~~~~~F~e~D~~~L~ 149 (160)
T 3ksh_A 76 HIPIGKGVCGTAVSERRTQVVADVHQFKGH------IACDANSKSEIVVPIFKDDKIIGVLDIDAPITDRFDDNDKEHLE 149 (160)
T ss_dssp EEETTSHHHHHHHHHTSCEEESCGGGSTTC------CGGGTTCSEEEEEEEEETTEEEEEEEEEESSSSCCCHHHHHHHH
T ss_pred EeeCCCCHHHHHHhhCCEEEECCcccCccc------cccCcccCceEEEEEEECCEEEEEEEEecCCCCCCCHHHHHHHH
Confidence 789999999999999999999988764422 2234568899999986 399999996542 35666666
Q ss_pred HHHHHh
Q 006217 193 HIKASL 198 (656)
Q Consensus 193 ~ik~~F 198 (656)
.+-..+
T Consensus 150 ~lA~~l 155 (160)
T 3ksh_A 150 AIVKII 155 (160)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 37
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=90.61 E-value=0.2 Score=48.16 Aligned_cols=74 Identities=23% Similarity=0.327 Sum_probs=57.3
Q ss_pred eecCCCCccceeeeCCCcEEeeCCCcCCCcchhhHHhhhhcCCcEEEEeeeC-----CeEEEecccccc---cCChhHHH
Q 006217 121 VFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHL-----DGVIELGVTELV---PEDPSLLQ 192 (656)
Q Consensus 121 sF~~G~GlpGra~~~g~~~Wl~~~~~~~~~~~~R~~la~sagIQTvvciP~~-----~GVvELGSt~~v---~Ed~~lv~ 192 (656)
.++.|+|+.|+|+.+|+++-+.+.+..+.. .+...+.+..+|||+. =|||.+.|.+.- .+|..+++
T Consensus 77 ri~~GeGv~G~va~tg~~i~V~Dv~~~p~~------i~~~~~~~Sei~VPI~~~g~viGVL~i~s~~~~~F~e~D~~~L~ 150 (171)
T 3rfb_A 77 RIALGKGVCGEAAHFQETVIVGDVTTYLNY------ISCDSLAKSEIVVPMMKNGQLLGVLDLDSSEIEDYDAMDRDYLE 150 (171)
T ss_dssp EEETTSHHHHHHHHTTSCEEESCTTSCSSC------CCSCTTCCEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHHHH
T ss_pred EeeCCcCHHHHHHhhCCEEEECCcccCccc------cccCcccCceEEEEEEECCEEEEEEEEecCCCCCCCHHHHHHHH
Confidence 789999999999999999999998764422 1233567899999986 399999996542 46777888
Q ss_pred HHHHHhcc
Q 006217 193 HIKASLLD 200 (656)
Q Consensus 193 ~ik~~F~~ 200 (656)
.+-..+..
T Consensus 151 ~lA~~la~ 158 (171)
T 3rfb_A 151 QFVAILLE 158 (171)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777654
No 38
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=90.55 E-value=1.4 Score=45.63 Aligned_cols=67 Identities=9% Similarity=-0.043 Sum_probs=54.7
Q ss_pred eEEEEEEccCCCChHHHHHHHHHccCCeEEEEEee--cCCceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 006217 586 DVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSS--NLDGVLTLALKSTFRGAAIAPAGIIEQALWKIAG 654 (656)
Q Consensus 586 dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS--~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 654 (656)
.+.|.|.|+.|+|+..+|-..|-+.|+.++.++.. ...|.|+..+...+.+ ..+..+++++|..+..
T Consensus 8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~--~~~~~~L~~~f~~la~ 76 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD--DFDEAGFRAGLAERSE 76 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS--SCCHHHHHHHHHHHHG
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC--CCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999998877 4567776655555443 4789999999987643
No 39
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=90.47 E-value=0.63 Score=41.03 Aligned_cols=58 Identities=16% Similarity=0.071 Sum_probs=40.4
Q ss_pred CCCCccceeeeCCCcEEeeCCCcCCCcchhh-HHhhhhcCCcEEEEeeeC-----CeEEEeccccc
Q 006217 124 SGQGLPGRALANSETIWLCNAQCADSKVFSR-SLLAKSASIQTVICFPHL-----DGVIELGVTEL 183 (656)
Q Consensus 124 ~G~GlpGra~~~g~~~Wl~~~~~~~~~~~~R-~~la~sagIQTvvciP~~-----~GVvELGSt~~ 183 (656)
.|.|..|+++.+|+++++.+....+ .|.. ...+...||+.++|||+. -|||.+.+...
T Consensus 52 ~~~~~~~~~~~~~~~~~i~d~~~~~--~~~~~~~~~~~~g~~s~~~vPl~~~~~~iGvl~~~~~~~ 115 (151)
T 3hcy_A 52 DGHSPWITGANEPEPIFVENVDDAE--FSRELKESIVGEGIAALGFFPLVTEGRLIGKFMTYYDRP 115 (151)
T ss_dssp CBCCSCC---CCCCCEEESCGGGSC--CCHHHHHHHHHHTCCEEEEEEEESSSSEEEEEEEEESSC
T ss_pred cCCCchhhhhhcCCcEEEeChhhCc--ccchhHHHHHhcCchheEEeceEECCEEEEEEEEecCCC
Confidence 3668899999999999998765433 2222 234667899999999986 38999987654
No 40
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=90.24 E-value=1.6 Score=45.20 Aligned_cols=69 Identities=12% Similarity=0.177 Sum_probs=55.8
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEee--cCCceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 006217 585 MDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSS--NLDGVLTLALKSTFRGAAIAPAGIIEQALWKIAG 654 (656)
Q Consensus 585 ~dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS--~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 654 (656)
..+.|.+.|+.|+|+..+|-..|-+.|+.++.++.. ...|.|+.-+...+.+. ..+..+++++|..+..
T Consensus 5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~-~~~~~~L~~~f~~la~ 75 (288)
T 3obi_A 5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAK-VIPLASLRTGFGVIAA 75 (288)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSC-CCCHHHHHHHHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCC-CCCHHHHHHHHHHHHH
Confidence 457899999999999999999999999999998764 45677776666666543 3689999999976643
No 41
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=89.47 E-value=0.63 Score=49.61 Aligned_cols=68 Identities=12% Similarity=0.144 Sum_probs=56.4
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 006217 585 MDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIA 653 (656)
Q Consensus 585 ~dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 653 (656)
..+.|.|.|+.|+|+...|...|-+.|..|+.++-....|.|...+...+.+. ..+.++|+++|..+.
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~-~~~~~~l~~~l~~~~ 78 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPAD-VADGPALRHDVEAAI 78 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHH-HHTSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCC-cCCHHHHHHHHHHHH
Confidence 35789999999999999999999999999999998888888877777766442 235688999887654
No 42
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=89.23 E-value=0.31 Score=42.44 Aligned_cols=60 Identities=13% Similarity=0.120 Sum_probs=43.5
Q ss_pred eecCCCCccceeeeCCCcEEeeCCCcCCCcchhhHHhhhhcCCcEEEEeeeC-----CeEEEeccccc
Q 006217 121 VFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHL-----DGVIELGVTEL 183 (656)
Q Consensus 121 sF~~G~GlpGra~~~g~~~Wl~~~~~~~~~~~~R~~la~sagIQTvvciP~~-----~GVvELGSt~~ 183 (656)
.++.|.|+.|+++.+++++++.+....+. |..... ...|++.++|||+. -|||.+++...
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~-~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~ 120 (153)
T 2w3g_A 56 HLPKGLGVIGLLIEDPKPLRLDDVSAHPA--SIGFPP-YHPPMRTFLGVPVRVRDESFGTLYLTDKTN 120 (153)
T ss_dssp SCCCSCTHHHHHHHSCSCEEESSGGGSTT--CCCCCT-TCCCCCCEEEEEEEETTEEEEEEEEEEETT
T ss_pred cCCCCCCHHHHHHhcCCcEEecCcccCch--hcCCCC-cCCCCCeEEEeeEEECCEEEEEEEEeeCCC
Confidence 34557899999999999999987543221 111111 45789999999986 38999998765
No 43
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=88.93 E-value=0.55 Score=42.68 Aligned_cols=73 Identities=15% Similarity=0.131 Sum_probs=49.7
Q ss_pred CCCCccceeeeCCCcEEeeCCCcCCCcchhhHHhhhhcCCcEEEEeeeC------CeEEEecc-cccc---cCChhHHHH
Q 006217 124 SGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHL------DGVIELGV-TELV---PEDPSLLQH 193 (656)
Q Consensus 124 ~G~GlpGra~~~g~~~Wl~~~~~~~~~~~~R~~la~sagIQTvvciP~~------~GVvELGS-t~~v---~Ed~~lv~~ 193 (656)
.|.|+.|+++.+|+++.+.+....+. +.........|++.++|||+. -|||.+++ ...- .+|..|++.
T Consensus 70 ~~~~~~~~~~~~~~~~~v~d~~~~~~--~~~~~~~~~~g~~s~~~vPl~~~~~~~~GvL~l~~~~~~~~f~~~d~~lL~~ 147 (181)
T 2qyb_A 70 EIETYIGEAFLSNRLQFVNDTQYMTK--PLTRELMQKEGIKSFAHIPISRKGEPPFGILSVFSRTIVGLFNEPFLNLLES 147 (181)
T ss_dssp CTTSHHHHHHHHTSCEEESCGGGCSC--HHHHHHHHHTTCCEEEEEEECCTTSCCCEEEEEEESSCSSCCCHHHHHHHHH
T ss_pred CCCCchhhhhhcCCCEEecChhcCCc--hhhHHHHHhcCcceEEEEEEEeCCCeEEEEEEEecCCCCCCCCHHHHHHHHH
Confidence 37899999999999999987654333 111223445799999999984 38999998 4432 234455555
Q ss_pred HHHHh
Q 006217 194 IKASL 198 (656)
Q Consensus 194 ik~~F 198 (656)
+-..+
T Consensus 148 la~~~ 152 (181)
T 2qyb_A 148 LAGQL 152 (181)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 44
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=88.25 E-value=2 Score=44.78 Aligned_cols=67 Identities=12% Similarity=0.050 Sum_probs=53.3
Q ss_pred eEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecC--CceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 006217 586 DVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNL--DGVLTLALKSTFRGAAIAPAGIIEQALWKIA 653 (656)
Q Consensus 586 dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~--dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 653 (656)
.+.|.+.|+.|+|+..+|-..|-+.|..++.++.... .|.|+.-+...+.+. ..+.++++++|..+.
T Consensus 22 ~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~-~~~~~~L~~~l~~la 90 (302)
T 3o1l_A 22 TFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTL-PFDLDGFREAFTPIA 90 (302)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGS-SSCHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCC-CCCHHHHHHHHHHHH
Confidence 4679999999999999999999999999999887743 677766555544332 368999999997654
No 45
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=87.71 E-value=2.7 Score=43.50 Aligned_cols=68 Identities=9% Similarity=0.115 Sum_probs=52.9
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEee--cCCceEEEEEEEEeC--CCcccCHHHHHHHHHHHh
Q 006217 585 MDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSS--NLDGVLTLALKSTFR--GAAIAPAGIIEQALWKIA 653 (656)
Q Consensus 585 ~dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS--~~dg~l~~ti~aKv~--~~~~~s~~~IkqAL~~vi 653 (656)
..+.|.+.|+.|+|+..+|-..|-+.|+.++.++.. ...|.|+..+..... +. ..+.++++++|..+.
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~-~~~~~~L~~~f~~la 80 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDAD-ALRVDALRREFEPIA 80 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC-----CCHHHHHHHHHHHH
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCccc-CCCHHHHHHHHHHHH
Confidence 457899999999999999999999999999998877 456777655544443 21 367899999997654
No 46
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=87.46 E-value=0.4 Score=42.09 Aligned_cols=61 Identities=18% Similarity=0.183 Sum_probs=41.8
Q ss_pred eecCCCCccceeeeCCCcEEeeCCCcCCCcchhhHHhhhhcCCcEEEEeeeC-----CeEEEeccccc
Q 006217 121 VFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHL-----DGVIELGVTEL 183 (656)
Q Consensus 121 sF~~G~GlpGra~~~g~~~Wl~~~~~~~~~~~~R~~la~sagIQTvvciP~~-----~GVvELGSt~~ 183 (656)
.++.+.|+.|+++.+++++++.+....+. |.........|+..++|||+. -|||.+++...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~ 139 (171)
T 3ci6_A 74 SLQLSEGLVGLVGQREEIVNLENASKHER--FAYLPETGEEIYNSFLGVPVMYRRKVMGVLVVQNKQP 139 (171)
T ss_dssp EEETTSHHHHHHHHHTSCEEESSGGGSTT--C---------CCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred eeeccCCeehhhhccCceEEecCCCcCcc--hhccccccccccceEEEEeEEECCEEEEEEEEecCCC
Confidence 56678899999999999999986543221 222222256789999999986 38999999854
No 47
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=86.11 E-value=1.4 Score=42.03 Aligned_cols=65 Identities=9% Similarity=0.086 Sum_probs=51.0
Q ss_pred EEEEEEccCCCChHHHHHHHHHccCCeEEEEEeec-C-CceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 006217 587 VLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSN-L-DGVLTLALKSTFRGAAIAPAGIIEQALWKIAG 654 (656)
Q Consensus 587 vlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~-~-dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 654 (656)
..|.|....++|+|.+|...|.+.|+.+.++.+.. . .|+..++|... .+ ....+.|.+.|+++++
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~-~d--~~~leqI~kqL~Kl~d 70 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-GD--EKVLEQIEKQLHKLVD 70 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-SC--HHHHHHHHHHHHHSTT
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe-cc--HHHHHHHHHHHcCCCC
Confidence 46888999999999999999999999988877753 3 37888888876 22 3567778888877653
No 48
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=85.10 E-value=1.7 Score=43.34 Aligned_cols=62 Identities=10% Similarity=-0.010 Sum_probs=46.0
Q ss_pred eEEEEEEccCCCChHHHHHHHHHccCCeEEEEEeecC-----CceEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 006217 586 DVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNL-----DGVLTLALKSTFRGAAIAPAGIIEQALWKI 652 (656)
Q Consensus 586 dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~-----dg~l~~ti~aKv~~~~~~s~~~IkqAL~~v 652 (656)
.+.|.|.+..|+|+|.+|+.+|.+.+..+.+++.+.. ++....+ .++.+. ..++|-+.|+++
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~--IEV~d~---~Le~LL~kLrkI 70 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIY--FEIEGG---DFEKILERVKTF 70 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEE--EEECSS---CHHHHHHHHHTC
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEE--EEECCC---CHHHHHHHHhCC
Confidence 4678999999999999999999999999999999885 4665544 666552 777777777653
No 49
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=84.83 E-value=0.62 Score=42.10 Aligned_cols=74 Identities=16% Similarity=0.228 Sum_probs=51.3
Q ss_pred eecCCCCccceeeeCCCcEEeeCCCcCCCcchhhHHhhhhcCCcEEEEeeeC-----CeEEEecccccc----cCChhHH
Q 006217 121 VFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHL-----DGVIELGVTELV----PEDPSLL 191 (656)
Q Consensus 121 sF~~G~GlpGra~~~g~~~Wl~~~~~~~~~~~~R~~la~sagIQTvvciP~~-----~GVvELGSt~~v----~Ed~~lv 191 (656)
.|+.|.|+.|+++.+|+++++.+....+.. ..........+++.++|+|+. -|||.+.....- .+|..|+
T Consensus 85 ~~~~~~~~~~~v~~~~~~~~i~d~~~~~~~-~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~~f~~~d~~ll 163 (189)
T 2zmf_A 85 RFSIEKGIAGQVARTGEVLNIPDAYADPRF-NREVDLYTGYTTRNILCMPIVSRGSVIGVVQMVNKISGSAFSKTDENNF 163 (189)
T ss_dssp EEETTSHHHHHHHHHCCCEEESCGGGSTTC-CTHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEETTSSSCCHHHHHHH
T ss_pred ccCCCccHHHHHHHhCCeEEEecccccccc-cccchhhcccccceEEEeeecccCceeeEEEEEEcCCCCCcCHHHHHHH
Confidence 678899999999999999999876643322 233444556789999999986 378888644321 2345555
Q ss_pred HHHH
Q 006217 192 QHIK 195 (656)
Q Consensus 192 ~~ik 195 (656)
+.+-
T Consensus 164 ~~lA 167 (189)
T 2zmf_A 164 KMFA 167 (189)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 50
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=83.31 E-value=4.7 Score=41.58 Aligned_cols=67 Identities=9% Similarity=0.064 Sum_probs=50.0
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHccCCeEEEEEee--cCCceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 006217 585 MDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSS--NLDGVLTLALKSTFRGAAIAPAGIIEQALWKIAG 654 (656)
Q Consensus 585 ~dvlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS--~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 654 (656)
..+.|.+.|+.|+|+..+|-..|-+.|..++..+.. ...|.|+..+...... .+..+++++|..+..
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~---~~~~~L~~~f~~la~ 74 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPV---AGVNDFNSAFGKVVE 74 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC------CHHHHHHHHHHG
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCC---CCHHHHHHHHHHHHH
Confidence 357899999999999999999999999999998764 4567776555444332 334588888876543
No 51
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=83.14 E-value=1.8 Score=41.35 Aligned_cols=65 Identities=11% Similarity=0.020 Sum_probs=50.6
Q ss_pred EEEEEEccCCCChHHHHHHHHHccCCeEEEEEeec-C-CceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 006217 587 VLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSN-L-DGVLTLALKSTFRGAAIAPAGIIEQALWKIAG 654 (656)
Q Consensus 587 vlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~-~-dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 654 (656)
-.|.|....++|+|.+|...|...|+.+.++.+.. . +|+..++|... .+ ....+.|.+.|++++.
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~-~d--~~~leql~kQL~Kl~d 71 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN-GP--DEIVEQITKQLNKLIE 71 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE-EC--HHHHHHHHHHHHHSTT
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe-cc--HHHHHHHHHHhcCCCC
Confidence 46788899999999999999999988888877753 3 47888888886 22 3567778888887653
No 52
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=81.32 E-value=1.2 Score=46.36 Aligned_cols=63 Identities=14% Similarity=0.257 Sum_probs=44.2
Q ss_pred eeecCCCCccceeeeCCCcEEee-CCCcCCCcchhh-HHhhhhcCCcEEEEeeeCC------eEEEecccc
Q 006217 120 FVFSSGQGLPGRALANSETIWLC-NAQCADSKVFSR-SLLAKSASIQTVICFPHLD------GVIELGVTE 182 (656)
Q Consensus 120 ~sF~~G~GlpGra~~~g~~~Wl~-~~~~~~~~~~~R-~~la~sagIQTvvciP~~~------GVvELGSt~ 182 (656)
..++.|.|+.|+++.+|+++++. +....+.....+ .......+++.++|||+.. |||.+.+..
T Consensus 261 ~~~~~~~~~~~~v~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~ 331 (398)
T 1ykd_A 261 LRVPIGKGFAGIVAASGQKLNIPFDLYDHPDSATAKQIDQQNGYRTCSLLCMPVFNGDQELIGVTQLVNKK 331 (398)
T ss_dssp EEEETTSHHHHHHHHHCCCEEECSCGGGSTTCHHHHHHHHHHTCCCCCEEEEEEECSSSCEEEEEEEEEEC
T ss_pred eeccCCCchhhHHhccCCeEEeccccccCcccCcccchhhhcCCeeeeEEEEeeecCCCCEEEEEEEEecC
Confidence 36788999999999999999998 655432211111 1122234578899999974 899998876
No 53
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=79.50 E-value=5.4 Score=38.99 Aligned_cols=64 Identities=13% Similarity=0.159 Sum_probs=51.4
Q ss_pred EEEEEEccCCCChHHHHHHHHHccCCeEEEEEee-cCC-ceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 006217 587 VLIEMRCPSREYILLDIMDAINNLHLDAYSVVSS-NLD-GVLTLALKSTFRGAAIAPAGIIEQALWKIA 653 (656)
Q Consensus 587 vlIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS-~~d-g~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 653 (656)
-.|.|.-+.++|.|.+|...|...|+.+.+..+. +.+ |+..++|++.-. ...++.|.+.|.+++
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~---e~~ieqL~kQL~KLi 95 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD---DKTIEQIEKQAYKLV 95 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC---TTHHHHHHHHHTTST
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC---HHHHHHHHHHhcCcC
Confidence 4688888999999999999999999999987775 444 788888888632 256788888888765
No 54
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=79.08 E-value=1 Score=51.32 Aligned_cols=75 Identities=20% Similarity=0.291 Sum_probs=50.8
Q ss_pred eeecCCCCccceeeeCCCcEEeeCCCcCCCcchhhHH-hhhhcCCcEEEEeeeC-C-----eEEEecccccc----cCCh
Q 006217 120 FVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSL-LAKSASIQTVICFPHL-D-----GVIELGVTELV----PEDP 188 (656)
Q Consensus 120 ~sF~~G~GlpGra~~~g~~~Wl~~~~~~~~~~~~R~~-la~sagIQTvvciP~~-~-----GVvELGSt~~v----~Ed~ 188 (656)
..++.|.|+.|+++.+|+++++.+....+. |.+.. .....+++.++|+|+. . |||.+.+...- .+|.
T Consensus 244 ~~~~~~~gi~g~v~~~g~~v~i~d~~~d~~--~~~~~~~~~g~~~rS~L~vPL~~~~g~viGVL~l~~~~~~~~f~~~d~ 321 (691)
T 3ibj_A 244 IRIPADQGIAGHVATTGQILNIPDAYAHPL--FYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDE 321 (691)
T ss_dssp EEEETTSHHHHHHHHHCSCEEESCSTTSTT--C------CCSCCCCCEEEEECCCSSSCCCEEEEEEEESSSSSCCTTTT
T ss_pred eeccCCCCHHHHHHHhCCEEEecCcccCcc--ccchhhcccCCeeeeEEEEeEECCCCCEEEEEEEEECCCCCCCCHHHH
Confidence 367889999999999999999987654332 22221 1122568999999985 2 89999876543 4566
Q ss_pred hHHHHHHH
Q 006217 189 SLLQHIKA 196 (656)
Q Consensus 189 ~lv~~ik~ 196 (656)
.+++.+-.
T Consensus 322 ~ll~~lA~ 329 (691)
T 3ibj_A 322 DLATAFSI 329 (691)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665543
No 55
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=76.92 E-value=2.1 Score=43.70 Aligned_cols=73 Identities=21% Similarity=0.270 Sum_probs=48.9
Q ss_pred eecCCCCccceeeeCCCcEEeeCCCcCCCcchhhH-HhhhhcCCcEEEEeeeCC------eEEEecccccc----cCChh
Q 006217 121 VFSSGQGLPGRALANSETIWLCNAQCADSKVFSRS-LLAKSASIQTVICFPHLD------GVIELGVTELV----PEDPS 189 (656)
Q Consensus 121 sF~~G~GlpGra~~~g~~~Wl~~~~~~~~~~~~R~-~la~sagIQTvvciP~~~------GVvELGSt~~v----~Ed~~ 189 (656)
.|+.|.|+.|+++.+|+++++.+....+. |.+. .......++.++|||+.. |||.+++...- .+|..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~i~d~~~~~~--~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~~~~~f~~~d~~ 322 (368)
T 1mc0_A 245 RIPADQGIAGHVATTGQILNIPDAYAHPL--FYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDED 322 (368)
T ss_dssp EECTTSHHHHHHHHHCCCEEESCSTTCTT--CCCTTHHHHTCCCCCEEEEEEECTTSCEEEEEEEEEETTSSSCCHHHHH
T ss_pred eecCCCceeeeehhhCCEEEecCcccCcc--cchhhhhccCCccceEEEEeeECCCCcEEEEEEEEECCCCCCCCHHHHH
Confidence 67888999999999999999987654322 2221 111223358999999863 89999987643 23444
Q ss_pred HHHHHH
Q 006217 190 LLQHIK 195 (656)
Q Consensus 190 lv~~ik 195 (656)
|++.+-
T Consensus 323 ll~~la 328 (368)
T 1mc0_A 323 LATAFS 328 (368)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 56
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=75.57 E-value=0.91 Score=46.43 Aligned_cols=74 Identities=18% Similarity=0.210 Sum_probs=50.2
Q ss_pred eeecCCCCccceeeeCCCcEEeeCCCcCCCcchhhHHhhhhcCCcEEEEeeeC-C------eEEEeccccc----ccCCh
Q 006217 120 FVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHL-D------GVIELGVTEL----VPEDP 188 (656)
Q Consensus 120 ~sF~~G~GlpGra~~~g~~~Wl~~~~~~~~~~~~R~~la~sagIQTvvciP~~-~------GVvELGSt~~----v~Ed~ 188 (656)
..|+.|.|+.|.++.+++++++.+....+. .........+++.++|+|+. + |||.+.+... -.+|.
T Consensus 74 ~~~~~~~g~~g~~~~~~~~~~i~d~~~~~~---~~~~~~~~~~~~s~l~vPl~~~~~~~~~Gvl~l~~~~~~~~f~~~d~ 150 (368)
T 1mc0_A 74 VSFPLTMGRLGQVVEDKQCIQLKDLTSDDV---QQLQNMLGCELQAMLCVPVISRATDQVVALACAFNKLGGDFFTDEDE 150 (368)
T ss_dssp EEEESSSSSHHHHHHHCCCEEGGGSCHHHH---HHHHHHHCSCCCCEEEEEEECTTTCSEEEEEEEEEESSCSSCCSHHH
T ss_pred eeeccccCHHHHHHhcCCeEEecccccccc---cccccccCcccceEEEEEeecCCCCcEEEEEEeecCCCCCCCCHHHH
Confidence 367889999999999999999987653221 12223344678999999985 3 7999876543 22345
Q ss_pred hHHHHHHH
Q 006217 189 SLLQHIKA 196 (656)
Q Consensus 189 ~lv~~ik~ 196 (656)
.+++.+-.
T Consensus 151 ~~l~~la~ 158 (368)
T 1mc0_A 151 HVIQHCFH 158 (368)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
No 57
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=75.51 E-value=0.98 Score=46.98 Aligned_cols=61 Identities=15% Similarity=0.244 Sum_probs=44.6
Q ss_pred eecCCCCccceeeeCCCcEEeeCCCcCCC-cchhhHH-hhhhcCCcEEEEeeeC--C----eEEEeccc
Q 006217 121 VFSSGQGLPGRALANSETIWLCNAQCADS-KVFSRSL-LAKSASIQTVICFPHL--D----GVIELGVT 181 (656)
Q Consensus 121 sF~~G~GlpGra~~~g~~~Wl~~~~~~~~-~~~~R~~-la~sagIQTvvciP~~--~----GVvELGSt 181 (656)
.++.|.|+.|+++.+|+++++.+....+. ..|.+.. .+...+++.++|||+. + |||.+...
T Consensus 75 ~~~~~~g~~g~v~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~g~~iGvl~l~~~ 143 (398)
T 1ykd_A 75 RIPADKGIAGEVATFKQVVNIPFDFYHDPRSIFAQKQEKITGYRTYTMLALPLLSEQGRLVAVVQLLNK 143 (398)
T ss_dssp EEETTSHHHHHHHHHCCCEEECSCGGGSGGGHHHHHHHHHHCCCCSCEEEEEEECSSCCEEEEEEEEEE
T ss_pred ecCCCCchhhhhhccCcEEeccchhcccchhhcccccCcccCcCCceEEEEEEECCCCCEEEEEEEecc
Confidence 57789999999999999999988765322 2233322 2234678999999985 2 78888765
No 58
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=75.18 E-value=1.2 Score=41.01 Aligned_cols=69 Identities=16% Similarity=0.178 Sum_probs=46.1
Q ss_pred CCCccceeeeCCCcEEeeCCCcCCCcchhhHHhhhhcCCcEEEEeeeC-----CeEEEecccccc---cCChhHHHHHH
Q 006217 125 GQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHL-----DGVIELGVTELV---PEDPSLLQHIK 195 (656)
Q Consensus 125 G~GlpGra~~~g~~~Wl~~~~~~~~~~~~R~~la~sagIQTvvciP~~-----~GVvELGSt~~v---~Ed~~lv~~ik 195 (656)
+.|+.|+++.+|+++.+.+....+ .|.........|++.++|||+. -|||.+.+...- .+|..|++.+-
T Consensus 94 ~~~~~~~~~~~~~~~~i~d~~~~~--~~~~~~~~~~~~~~s~l~vPL~~~~~~~GvL~l~~~~~~~f~~~d~~ll~~lA 170 (184)
T 3p01_A 94 QDPLTNEAIATGQIQVAANIAKDP--KLASISQYQDNGIQSHVVIPITYRNEMLGVLSLQWQQPISLREDELTLIHLSA 170 (184)
T ss_dssp GCHHHHHHHHHCSCEEESCGGGCH--HHHTCHHHHHHTCCEEEEEEEEETTEEEEEEEEEESSCCCCCHHHHHHHHHHH
T ss_pred CCcHHHHHHhhCCeEEEeccccCc--cccchhHHHHhCccEEEEEEEEECCEEEEEEEeCcCCCCCCCHHHHHHHHHHH
Confidence 467889999999999987755322 2222333445799999999986 399999665432 23444555443
No 59
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=74.25 E-value=3.2 Score=38.65 Aligned_cols=74 Identities=18% Similarity=0.308 Sum_probs=49.5
Q ss_pred eecCCCCccceeeeCCCcEEeeCCCcCCCcchhhHHhhhhcCCcEEEEeeeC-----CeEEEecccccc---cCChhHHH
Q 006217 121 VFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHL-----DGVIELGVTELV---PEDPSLLQ 192 (656)
Q Consensus 121 sF~~G~GlpGra~~~g~~~Wl~~~~~~~~~~~~R~~la~sagIQTvvciP~~-----~GVvELGSt~~v---~Ed~~lv~ 192 (656)
.++.|.++.|+++.+|+++=+.... +...|..-..+...|++.++|+|+. -|||-|++...- .+|..+++
T Consensus 54 ~ip~~~s~~~~v~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~S~l~vPL~~~~~~iGvl~l~~~~~~~f~~~d~~~l~ 131 (165)
T 3o5y_A 54 TIPKEQSLYWSALDQRQTIFRSLTD--TQDNFYEKQYLAILDLKSILVIPIYSKNKRVGVLSIGRKQQIDWSLDDLAFLE 131 (165)
T ss_dssp EECSTTCHHHHHHHHTSCEEEESCC--TTCCCTTHHHHHTTTCCEEEEEEEECSSCEEEEEEEEESSCCCCCHHHHHHHH
T ss_pred ccCCccCHHHHHHHhCCeEEEcCcc--cccccccchHHHhhCCCEEEEeCeeECCEEEEEEEEEeCCCCCCCHHHHHHHH
Confidence 4666778889999999998543222 2223333345677899999999985 489999987542 23445555
Q ss_pred HHHH
Q 006217 193 HIKA 196 (656)
Q Consensus 193 ~ik~ 196 (656)
.+-.
T Consensus 132 ~la~ 135 (165)
T 3o5y_A 132 QLTD 135 (165)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 60
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=60.87 E-value=15 Score=33.27 Aligned_cols=56 Identities=13% Similarity=0.036 Sum_probs=39.5
Q ss_pred CCccce----eeeCCCcEEeeCCCcCCCcchhhHHhhhhcCCcEEEEeeeC-----CeEEEecccc
Q 006217 126 QGLPGR----ALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHL-----DGVIELGVTE 182 (656)
Q Consensus 126 ~GlpGr----a~~~g~~~Wl~~~~~~~~~~~~R~~la~sagIQTvvciP~~-----~GVvELGSt~ 182 (656)
.|..|. ++.+|+++.+.+....+...+.+. .....|++.++|||+. -|||.+-...
T Consensus 78 ~~~~g~v~~~~~~~~~~~~i~d~~~~~~~~~~~~-~~~~~~~~s~l~vPi~~~~~l~G~l~~~~~~ 142 (172)
T 2k2n_A 78 AQSRSISQPESWGLSARVPLGEPLQRPVDPCHVH-YLKSMGVASSLVVPLMHHQELWGLLVSHHAE 142 (172)
T ss_dssp GCCCCCSCCCSCCCSSCCCCCSSSSCCCCHHHHH-HHHTTTCSEEEECCCSCSSCCCEEEEEEECS
T ss_pred ccccccccccccccCCceeccchhhcCCCHHHHH-HHHhcCCeEEEEEEEEECCEEEEEEEEEeCC
Confidence 455555 589999999988765443332222 2346899999999986 3999998874
No 61
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=59.35 E-value=15 Score=34.11 Aligned_cols=72 Identities=14% Similarity=0.079 Sum_probs=46.2
Q ss_pred CCCccce----eeeCCCcEEeeCCCcCCCcchhhHHhhhhcCCcEEEEeeeC-----CeEEEecccccc---cCChhHHH
Q 006217 125 GQGLPGR----ALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHL-----DGVIELGVTELV---PEDPSLLQ 192 (656)
Q Consensus 125 G~GlpGr----a~~~g~~~Wl~~~~~~~~~~~~R~~la~sagIQTvvciP~~-----~GVvELGSt~~v---~Ed~~lv~ 192 (656)
++|..|. ++.+|+++-+.+....+...+.+..+ ...|++.++|||+. -|||.+.+...- .++..|++
T Consensus 107 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~l-~~~~~~S~l~vPi~~~~~l~GvL~~~~~~~~~~~~~e~~ll~ 185 (208)
T 2lb5_A 107 EAQSRSISQPESWGLSARVPLGEPLQRPVDPCHVHYL-KSMGVASSLVVPLMHHQELWGLLVSHHAEPRPYSQEELQVVQ 185 (208)
T ss_dssp GGCCCCCCCSSCCCCCSCCCCCSCSSCCCCHHHHHHH-HHTTCSEEEEEEEEETTEEEEEEEEEESCCCCCCHHHHHHHH
T ss_pred ccccccccccccccccccccccchhhccCCHHHHHHH-HhcCCcEEEEEEEEECCEeEEEEEEeeCCCCCCCHHHHHHHH
Confidence 3455554 78999999887766543333333333 46899999999986 399999887432 22344555
Q ss_pred HHHHH
Q 006217 193 HIKAS 197 (656)
Q Consensus 193 ~ik~~ 197 (656)
.+-..
T Consensus 186 ~la~~ 190 (208)
T 2lb5_A 186 LLADQ 190 (208)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 62
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=58.29 E-value=33 Score=30.70 Aligned_cols=56 Identities=11% Similarity=0.127 Sum_probs=38.4
Q ss_pred EEEEccCCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHH
Q 006217 589 IEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWK 651 (656)
Q Consensus 589 IeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~ 651 (656)
|-+.-+.+||.+.+|+++|.+.|+.|...-++..++...+.|+. + +.+...++|++
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~--~-----d~~~A~~~L~~ 130 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP--S-----NMDKCIEVLKE 130 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE--S-----CHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe--C-----CHHHHHHHHHH
Confidence 55566799999999999999999999764443233433333433 2 56667777765
No 63
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=56.68 E-value=3.5 Score=46.98 Aligned_cols=70 Identities=20% Similarity=0.276 Sum_probs=46.4
Q ss_pred eeecCCCCccceeeeCCCcEEeeCCCcCCCcchhhHHhhhhcCCcEEEEeeeC-C------eEEEeccccc----ccCCh
Q 006217 120 FVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHL-D------GVIELGVTEL----VPEDP 188 (656)
Q Consensus 120 ~sF~~G~GlpGra~~~g~~~Wl~~~~~~~~~~~~R~~la~sagIQTvvciP~~-~------GVvELGSt~~----v~Ed~ 188 (656)
..++.| |+.|+++.+|+++++.+....+ .+. ........+++++|+|+. + |||.+..... -.+|.
T Consensus 75 ~~~p~~-Gi~g~v~~~~~pv~i~d~~~~~--~~~-~~~~~~~~~~S~L~vPI~~~~~g~viGvL~l~~~~~~~~ft~~d~ 150 (691)
T 3ibj_A 75 VSFPLT-GCLGQVVEDKKSIQLKDLTSED--VQQ-LQSMLGCELQAMLCVPVISRATDQVVALACAFNKLEGDLFTDEDE 150 (691)
T ss_dssp EEEECC-SSSHHHHHHCCCEEGGGSCHHH--HHH-HHHHHTSCCSCEEEEEEECSSSCSEEEEEEEESBSSSCCCCTTHH
T ss_pred eecCCc-cHHHHHHHHCCeEEeccchhcc--ccc-cccccCCccceEEEEEeEcCCCCcEEEEEEEEcCCCCCCCCHHHH
Confidence 367889 9999999999999997765321 111 112233558999999986 4 7998765422 23455
Q ss_pred hHHHH
Q 006217 189 SLLQH 193 (656)
Q Consensus 189 ~lv~~ 193 (656)
.+++.
T Consensus 151 ~lL~~ 155 (691)
T 3ibj_A 151 HVIQH 155 (691)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 64
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=54.80 E-value=2.6 Score=49.73 Aligned_cols=73 Identities=16% Similarity=0.190 Sum_probs=0.0
Q ss_pred eecCCCCccceeeeCCCcEEeeCCCcCCCcchhhH-HhhhhcCCcEEEEeeeCC------eEEEeccccc------ccCC
Q 006217 121 VFSSGQGLPGRALANSETIWLCNAQCADSKVFSRS-LLAKSASIQTVICFPHLD------GVIELGVTEL------VPED 187 (656)
Q Consensus 121 sF~~G~GlpGra~~~g~~~Wl~~~~~~~~~~~~R~-~la~sagIQTvvciP~~~------GVvELGSt~~------v~Ed 187 (656)
.|+.|.|+.|.++.+|+++++.+....+ .|... ......+++.++|+|+.. |||.+.+... -.+|
T Consensus 225 ~~p~~~gi~g~v~~~g~pv~I~D~~~dp--~f~~~~~~~~~~~~~S~L~vPL~~~~g~viGvL~l~~~~~~~~~~ft~~D 302 (878)
T 3bjc_A 225 RLEWNKGIVGHVAALGEPLNIKDAYEDP--RFNAEVDQITGYKTQSILCMPIKNHREEVVGVAQAINKKSGNGGTFTEKD 302 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeCCccHHHHHHhcCceEEeCCcccCc--ccccccccccCCccceEEEEeeEcCCCCEEEEEEEEecCCCCCCCCCHHH
Confidence 5788999999999999999998765422 22221 122345688999999864 7999886542 2344
Q ss_pred hhHHHHHH
Q 006217 188 PSLLQHIK 195 (656)
Q Consensus 188 ~~lv~~ik 195 (656)
..+++.+-
T Consensus 303 ~~lL~~lA 310 (878)
T 3bjc_A 303 EKDFAAYL 310 (878)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 55555443
No 65
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=50.11 E-value=56 Score=30.19 Aligned_cols=54 Identities=11% Similarity=0.132 Sum_probs=37.1
Q ss_pred EEEeCCeEEEEEEc-cCCCChHHHHHHHHHccCCeEEEEEeecC---CceEEEEEEEE
Q 006217 580 VSIQEMDVLIEMRC-PSREYILLDIMDAINNLHLDAYSVVSSNL---DGVLTLALKST 633 (656)
Q Consensus 580 V~i~e~dvlIeI~C-~~r~glL~~Im~aL~~L~LdV~svqsS~~---dg~l~~ti~aK 633 (656)
|....+-++|.|.. +.++|.+.+|+.+|.+.++.|.....+.. +|...++|...
T Consensus 10 Ia~~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~ 67 (167)
T 2dt9_A 10 VALDLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVK 67 (167)
T ss_dssp EEEECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEE
T ss_pred EEEeCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEe
Confidence 33456667777765 77899999999999998888876544322 45444555554
No 66
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=49.74 E-value=3.5 Score=48.63 Aligned_cols=60 Identities=13% Similarity=0.117 Sum_probs=0.0
Q ss_pred eecCCCCccceeeeCCCcEEeeCCCcCCCcchhhHHhhh-h---cCCcEEEEeeeC-C------eEEEecccc
Q 006217 121 VFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAK-S---ASIQTVICFPHL-D------GVIELGVTE 182 (656)
Q Consensus 121 sF~~G~GlpGra~~~g~~~Wl~~~~~~~~~~~~R~~la~-s---agIQTvvciP~~-~------GVvELGSt~ 182 (656)
.|+.|.|+.|+++.+|+++++.+....+ .|.+..... . .+++.++|+|+. . |||+|....
T Consensus 407 ~~p~~~gi~g~v~~~g~~v~i~D~~~d~--r~~~~~~~~~g~~~~~~rS~L~vPL~~~~~g~viGVL~l~~~~ 477 (878)
T 3bjc_A 407 ANKINYMYAQYVKNTMEPLNIPDVSKDK--RFPWTTENTGNVNQQCIRSLLCTPIKNGKKNKVIGVCQLVNKM 477 (878)
T ss_dssp -------------------------------------------------------------------------
T ss_pred ccchhhhHHHHHhhcCCeeeecCccccc--ccccccccccCccccccceEEEEEEecCCCCcEEEEEEEEEcC
Confidence 5778899999999999999998765322 233322221 1 469999999986 2 788886643
No 67
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=42.96 E-value=45 Score=30.85 Aligned_cols=53 Identities=11% Similarity=0.352 Sum_probs=36.9
Q ss_pred EEEeCCeEEEEEEc-cCCCChHHHHHHHHHccCCeEEEEEee-cCCceEEEEEEE
Q 006217 580 VSIQEMDVLIEMRC-PSREYILLDIMDAINNLHLDAYSVVSS-NLDGVLTLALKS 632 (656)
Q Consensus 580 V~i~e~dvlIeI~C-~~r~glL~~Im~aL~~L~LdV~svqsS-~~dg~l~~ti~a 632 (656)
|....+.+.|.|.. +.++|.+.+|+++|.+.++.|.....+ ..+|...++|.+
T Consensus 19 Ia~~~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v 73 (167)
T 2re1_A 19 IAFDKNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTV 73 (167)
T ss_dssp EEEECCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEE
T ss_pred EEecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEE
Confidence 44456677888884 889999999999999999998875433 235644444444
No 68
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=41.18 E-value=1.1e+02 Score=28.25 Aligned_cols=65 Identities=5% Similarity=0.013 Sum_probs=42.9
Q ss_pred EEEeCCeEEEEEEccC---CCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 006217 580 VSIQEMDVLIEMRCPS---REYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIA 653 (656)
Q Consensus 580 V~i~e~dvlIeI~C~~---r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 653 (656)
|.+.++-+.|.|.... ++|.+.+++++|.+.++.|.... +....+.+.|.. -......++|++.+
T Consensus 97 i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is--tse~~is~vv~~-------~d~~~av~~Lh~~f 164 (167)
T 2re1_A 97 IDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS--TSEIKVSVLIDE-------KYMELATRVLHKAF 164 (167)
T ss_dssp EEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE--ECSSEEEEEEEG-------GGHHHHHHHHHHHT
T ss_pred EEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE--cccCEEEEEEeH-------HHHHHHHHHHHHHh
Confidence 4445667788888764 89999999999999999998754 333333333321 22345556666544
No 69
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=39.77 E-value=81 Score=29.52 Aligned_cols=41 Identities=7% Similarity=0.149 Sum_probs=30.8
Q ss_pred EEEeCCeEEEEEE-ccCCCChHHHHHHHHHccCCeEEEEEee
Q 006217 580 VSIQEMDVLIEMR-CPSREYILLDIMDAINNLHLDAYSVVSS 620 (656)
Q Consensus 580 V~i~e~dvlIeI~-C~~r~glL~~Im~aL~~L~LdV~svqsS 620 (656)
|....+.++|.|. -+.++|.+.+|++.|.+.++.|.....+
T Consensus 9 Ia~~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s 50 (178)
T 2dtj_A 9 VATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQN 50 (178)
T ss_dssp EEEECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEEC
T ss_pred EEecCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcC
Confidence 4445667788884 5789999999999999999666554333
No 70
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=34.55 E-value=1.5e+02 Score=26.14 Aligned_cols=41 Identities=12% Similarity=0.237 Sum_probs=30.8
Q ss_pred EEEEEccCCCChHHHHHHHHHccCCeEEEEEee-cCC-ceEEE
Q 006217 588 LIEMRCPSREYILLDIMDAINNLHLDAYSVVSS-NLD-GVLTL 628 (656)
Q Consensus 588 lIeI~C~~r~glL~~Im~aL~~L~LdV~svqsS-~~d-g~l~~ 628 (656)
.|.|.-+.++|.|.+|+.+|.+.|+.|...... +.+ |++.+
T Consensus 8 ~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~ 50 (144)
T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRG 50 (144)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEE
Confidence 466677899999999999999999888876544 334 44333
No 71
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=33.99 E-value=1.7e+02 Score=27.57 Aligned_cols=54 Identities=11% Similarity=0.204 Sum_probs=37.4
Q ss_pred EEEeCCeEEEEEE-ccCCCChHHHHHHHHHccCCeEEEEE-eecC--CceEEEEEEEE
Q 006217 580 VSIQEMDVLIEMR-CPSREYILLDIMDAINNLHLDAYSVV-SSNL--DGVLTLALKST 633 (656)
Q Consensus 580 V~i~e~dvlIeI~-C~~r~glL~~Im~aL~~L~LdV~svq-sS~~--dg~l~~ti~aK 633 (656)
|....+.++|.|. -+.++|.+.+|+.+|.+.++.|.... .+.. +|...++|...
T Consensus 10 Ia~~~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~ 67 (181)
T 3s1t_A 10 VAHDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCS 67 (181)
T ss_dssp EEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEE
T ss_pred EEecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEe
Confidence 3345666777765 36789999999999999988887653 2222 56655666654
No 72
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=32.04 E-value=1.3e+02 Score=30.70 Aligned_cols=64 Identities=14% Similarity=0.144 Sum_probs=45.3
Q ss_pred EEEEccCCCChHHHHHHHHHccCCeEEEEEeecCC-ceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 006217 589 IEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLD-GVLTLALKSTFRGAAIAPAGIIEQALWKIAG 654 (656)
Q Consensus 589 IeI~C~~r~glL~~Im~aL~~L~LdV~svqsS~~d-g~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 654 (656)
|-+.-+.++|.|.++|..|...||..+...|--.. +..-+.|-+.+.|. ..-..+++||..+-.
T Consensus 203 l~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~--~~d~~v~~aL~~L~~ 267 (283)
T 2qmx_A 203 IVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGH--REDQNVHNALENLRE 267 (283)
T ss_dssp EEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESC--TTSHHHHHHHHHHHT
T ss_pred EEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecC--CCcHHHHHHHHHHHH
Confidence 33444689999999999999999999999986543 33345556666653 233567888876543
No 73
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=30.73 E-value=2.3e+02 Score=30.11 Aligned_cols=54 Identities=9% Similarity=0.209 Sum_probs=39.9
Q ss_pred EEEeCCeEEEEEE-ccCCCChHHHHHHHHHccCCeEEEEEeecC---CceEEEEEEEE
Q 006217 580 VSIQEMDVLIEMR-CPSREYILLDIMDAINNLHLDAYSVVSSNL---DGVLTLALKST 633 (656)
Q Consensus 580 V~i~e~dvlIeI~-C~~r~glL~~Im~aL~~L~LdV~svqsS~~---dg~l~~ti~aK 633 (656)
|....+.++|.|. .+.++|.+.+|+.+|.+.++.|....-++. +|...++|...
T Consensus 258 i~~~~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~ 315 (421)
T 3ab4_A 258 VATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCP 315 (421)
T ss_dssp EEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEE
T ss_pred EEeeCCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEe
Confidence 4556778888888 588899999999999999998887632333 46445555554
No 74
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=30.27 E-value=1.1e+02 Score=28.51 Aligned_cols=65 Identities=11% Similarity=0.121 Sum_probs=43.9
Q ss_pred EEEeCCeEEEEEEcc---CCCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 006217 580 VSIQEMDVLIEMRCP---SREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIA 653 (656)
Q Consensus 580 V~i~e~dvlIeI~C~---~r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 653 (656)
|.+.++-++|.|... .++|++.+++.+|.+-++.|.-...| .-.+.+.| . .-......++|++.+
T Consensus 89 v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~istS--e~~Is~vV--~-----~~d~~~Av~~Lh~~F 156 (178)
T 2dtj_A 89 VLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTS--EIRISVLI--R-----EDDLDAAARALHEQF 156 (178)
T ss_dssp EEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEE--TTEEEEEE--E-----GGGHHHHHHHHHHHH
T ss_pred EEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEEcC--CCeEEEEE--e-----HHHHHHHHHHHHHHH
Confidence 455677788888875 67899999999999999998765433 32222222 2 234556666777655
No 75
>3ld7_A LIN0431 protein; DUF1312, PF07009, LKR112, NESG, structural genomics, PSI-2, protein structure initiative; 1.55A {Listeria innocua}
Probab=29.65 E-value=26 Score=30.61 Aligned_cols=50 Identities=18% Similarity=0.248 Sum_probs=33.8
Q ss_pred eeecCCCCccceeeeCCCcEEeeCCCcCCCcchhhHHhhhhcCCcEEEEeee
Q 006217 120 FVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPH 171 (656)
Q Consensus 120 ~sF~~G~GlpGra~~~g~~~Wl~~~~~~~~~~~~R~~la~sagIQTvvciP~ 171 (656)
|.|....|..-..-..+.-+|+..++ ++.+.|.+.---... =|||||+|-
T Consensus 33 ~~i~~~~G~~n~ieI~dg~vrv~es~-CPdkiCv~~GwIs~~-Gq~IVCLPn 82 (101)
T 3ld7_A 33 FTIKGKGAQYNLMEVDGERIRIKEDN-SPDQVGVKMGWKSKA-GDTIVCLPH 82 (101)
T ss_dssp EEEECSTTCEEEEEEETTEEEEEEEC-CSSCHHHHHCCBCST-TCEEEETTT
T ss_pred EEEEcCCCCEEEEEEECCEEEEEECC-CCCcccccCCCcCCC-CCEEEEcCC
Confidence 44443344345677888889998777 677789874433333 489999994
No 76
>2kpp_A LIN0431 protein; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG, function; NMR {Listeria innocua}
Probab=28.63 E-value=19 Score=32.15 Aligned_cols=43 Identities=19% Similarity=0.276 Sum_probs=31.2
Q ss_pred CccceeeeCCCcEEeeCCCcCCCcchhhHHhhhhcCCcEEEEeee
Q 006217 127 GLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPH 171 (656)
Q Consensus 127 GlpGra~~~g~~~Wl~~~~~~~~~~~~R~~la~sagIQTvvciP~ 171 (656)
|..-..-..+.-+|+..++ ++.+.|.+.---...| |||||+|-
T Consensus 40 G~~n~IeIkdg~vrv~es~-CPdkiCv~~GwIsk~G-q~IVCLPn 82 (114)
T 2kpp_A 40 AQYNLMEVDGERIRIKEDN-SPDQVGVKMGWKSKAG-DTIVCLPH 82 (114)
T ss_dssp TEEEEEEEESSCEEEEEEC-CSSCHHHHHCSBCSTT-CEEEEGGG
T ss_pred CCEEEEEEECCEEEEEECC-CCCeehhhcCCcCCCC-CEEEEcCC
Confidence 3334566677788888776 6777899865555566 99999995
No 77
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=28.50 E-value=43 Score=21.77 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=16.0
Q ss_pred cchHHHHHHHHHHHHHHHHH
Q 006217 490 ASILSDTIKYLKKLEARVEE 509 (656)
Q Consensus 490 aSIL~daI~Yik~L~~~v~~ 509 (656)
+|-|-+|-.|+.+|.++++.
T Consensus 3 vsgliearkyleqlhrklkn 22 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 45678999999999988753
No 78
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=27.78 E-value=1.3e+02 Score=26.46 Aligned_cols=61 Identities=5% Similarity=0.066 Sum_probs=45.3
Q ss_pred eEEEEEEccCCCChHHHHHHHHHcc---CCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHH
Q 006217 586 DVLIEMRCPSREYILLDIMDAINNL---HLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQAL 649 (656)
Q Consensus 586 dvlIeI~C~~r~glL~~Im~aL~~L---~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL 649 (656)
+..++|--+..+++...|.++++.. +.++ ..+-|..+..+.++|.+.+... -....|-++|
T Consensus 36 ~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~-~~r~Ss~GkY~Svtv~v~v~S~--eQv~aiY~~L 99 (109)
T 1rwu_A 36 PFTYKVMGQALPELVDQVVEVVQRHAPGDYTP-TVKPSSKGNYHSVSITINATHI--EQVETLYEEL 99 (109)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE-EEEESSCSSEEEEEEEECCSSH--HHHHHHHHHH
T ss_pred CceEEEEEECcHHHHHHHHHHHHHhCCCCCCc-eecCCCCCeEEEEEEEEEECCH--HHHHHHHHHH
Confidence 5667777777899999999999987 6776 6688888888898988776542 2344444444
No 79
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=26.17 E-value=22 Score=26.34 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHhccccCC
Q 006217 498 KYLKKLEARVEELESCMYSVD 518 (656)
Q Consensus 498 ~Yik~L~~~v~~Le~~~~~l~ 518 (656)
.|+.+|+.++++|+.+..+++
T Consensus 3 aYl~eLE~r~k~le~~naeLE 23 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELE 23 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 488888888888877665443
No 80
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=26.08 E-value=35 Score=26.97 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhccccCC
Q 006217 497 IKYLKKLEARVEELESCMYSVD 518 (656)
Q Consensus 497 I~Yik~L~~~v~~Le~~~~~l~ 518 (656)
-.||..|+.+|+.|+..+..+.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3899999999999999887553
No 81
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=25.40 E-value=3.5e+02 Score=28.22 Aligned_cols=58 Identities=21% Similarity=0.218 Sum_probs=44.9
Q ss_pred CCCChHHHHHHHHHccCCeEEEEEeecC-CceEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 006217 595 SREYILLDIMDAINNLHLDAYSVVSSNL-DGVLTLALKSTFRGAAIAPAGIIEQALWKIAG 654 (656)
Q Consensus 595 ~r~glL~~Im~aL~~L~LdV~svqsS~~-dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 654 (656)
.++|.|.++|..|...||..+...|--. ++..-+.|-+.+.+. ..-..|++||..+-.
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~--~~d~~v~~AL~~L~~ 275 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAA--PWEERFRDALVEIAE 275 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSC--TTSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCC--cCCHHHHHHHHHHHH
Confidence 5799999999999999999999998654 445567777888774 333578888877644
No 82
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.84 E-value=43 Score=24.22 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=26.4
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHhcccc
Q 006217 486 EVDKASILSDTIKYLKKLEARVEELESCMYS 516 (656)
Q Consensus 486 k~dKaSIL~daI~Yik~L~~~v~~Le~~~~~ 516 (656)
.|..+.-|+++-+-|.+|+.+++.|+.++.+
T Consensus 3 e~ee~mTLeEtkeQi~~l~~kl~~LkeEKHQ 33 (38)
T 2l5g_A 3 EMEERMSLEETKEQILKLEEKLLALQEEKHQ 33 (38)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677999999999999999999988754
No 83
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=24.01 E-value=2.3e+02 Score=25.91 Aligned_cols=66 Identities=5% Similarity=-0.037 Sum_probs=43.9
Q ss_pred EEEEeCCeEEEEEEccC---CCChHHHHHHHHHccCCeEEEEEeecCCceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 006217 579 KVSIQEMDVLIEMRCPS---REYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIA 653 (656)
Q Consensus 579 eV~i~e~dvlIeI~C~~---r~glL~~Im~aL~~L~LdV~svqsS~~dg~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 653 (656)
.|.+.++-+.|.|.... ++|++.+++++|.+-++.|.-.. +..-.+ .+..+. -..+...++|++.+
T Consensus 88 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~Se~~i--s~vv~~-----~d~~~Av~~Lh~~f 156 (167)
T 2dt9_A 88 EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA--TSEVRI--SVIIPA-----EYAEAALRAVHQAF 156 (167)
T ss_dssp EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE--ECSSEE--EEEEEG-----GGHHHHHHHHHHHT
T ss_pred cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE--ccCCEE--EEEEeH-----HHHHHHHHHHHHHH
Confidence 55566777888888754 89999999999999999996553 333322 233321 23456666776654
No 84
>4esn_A Hypothetical protein; protein of PF07009 family, DUF1312, structural genomics, JOI for structural genomics, JCSG; HET: PE4; 2.20A {Ruminococcus gnavus}
Probab=23.94 E-value=31 Score=30.35 Aligned_cols=47 Identities=13% Similarity=0.221 Sum_probs=33.2
Q ss_pred cceeeeCCCcEEeeCCCcCCCcchhhHHhhhhcCCcEEEEeeeCCeEEEe
Q 006217 129 PGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLDGVIEL 178 (656)
Q Consensus 129 pGra~~~g~~~Wl~~~~~~~~~~~~R~~la~sagIQTvvciP~~~GVvEL 178 (656)
.-..-..+.-+|+..++ ++.+.|.+.---...| |||||+|-. =||++
T Consensus 45 ~n~IeI~dg~vrv~es~-CPdkiCv~~GwIs~~G-q~IVCLPnk-lvI~I 91 (104)
T 4esn_A 45 GNRLRIQNGQAKMEWAD-CPDQLCVHQKAISRTG-ESIICLPNQ-VVVSV 91 (104)
T ss_dssp TEEEEEETTEEEEEEEC-CSSCHHHHSCCBCSTT-CEEEETTTT-EEEEE
T ss_pred cEEEEEECCEEEEEECC-CCCcchhhCCCcCCCC-CEEEEcCCE-EEEEE
Confidence 45666777888888776 6778899855555566 999999843 13454
No 85
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=23.49 E-value=2e+02 Score=29.91 Aligned_cols=64 Identities=14% Similarity=0.134 Sum_probs=42.6
Q ss_pred EEEEEcc-CCCChHHHHHHHHHccCCeEEEEEeecCC-ceEEEEEEEEeCCCcccCHHHHHHHHHHHh
Q 006217 588 LIEMRCP-SREYILLDIMDAINNLHLDAYSVVSSNLD-GVLTLALKSTFRGAAIAPAGIIEQALWKIA 653 (656)
Q Consensus 588 lIeI~C~-~r~glL~~Im~aL~~L~LdV~svqsS~~d-g~l~~ti~aKv~~~~~~s~~~IkqAL~~vi 653 (656)
.|-+.-+ +++|.|.++|..|...||..+...|--.. +..-+.|-+.+.|. ..-..+++||..+-
T Consensus 203 Sl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~--~~d~~v~~aL~~L~ 268 (313)
T 3mwb_A 203 TVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGH--ATDSRVADALAGLH 268 (313)
T ss_dssp EEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESC--TTSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCC--CCcHHHHHHHHHHH
Confidence 3445555 79999999999999999999999886432 22233444444443 23346777776653
No 86
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=21.18 E-value=2.5e+02 Score=23.85 Aligned_cols=62 Identities=13% Similarity=0.205 Sum_probs=42.6
Q ss_pred eEEEEEEccCC--CChHHHHHHHHHccCCeEEEEEeec-CCc-e-EEEEEEEEeCCCcccCHHHHHHHHHHH
Q 006217 586 DVLIEMRCPSR--EYILLDIMDAINNLHLDAYSVVSSN-LDG-V-LTLALKSTFRGAAIAPAGIIEQALWKI 652 (656)
Q Consensus 586 dvlIeI~C~~r--~glL~~Im~aL~~L~LdV~svqsS~-~dg-~-l~~ti~aKv~~~~~~s~~~IkqAL~~v 652 (656)
...|.|.|... ..+..-++++|+..++-+.++.+.. .++ + +.++|.+.- ....+|.+.+.++
T Consensus 8 ~Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~~~~~veI~A~L~at~-----~~~~~Le~iv~rL 74 (94)
T 2lqj_A 8 PYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAGDDNITLTAHLLMVG-----HTPAKLERLVAEL 74 (94)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEECSSSCEEEEEEEEEES-----CCHHHHHHHHHHH
T ss_pred EEEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecCCCCeEEEEEEEEecC-----CCHHHHHHHHHHH
Confidence 36899999865 5788889999999999999998554 244 4 555666542 3444555554443
No 87
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=20.99 E-value=2.3e+02 Score=28.74 Aligned_cols=64 Identities=8% Similarity=0.045 Sum_probs=42.8
Q ss_pred EEEEEc---cCCCChHHHHHHHHHccCCeEEEEEeecCCc-eEEEEEEEEeCCCcccCHHHHHHHHHHHhh
Q 006217 588 LIEMRC---PSREYILLDIMDAINNLHLDAYSVVSSNLDG-VLTLALKSTFRGAAIAPAGIIEQALWKIAG 654 (656)
Q Consensus 588 lIeI~C---~~r~glL~~Im~aL~~L~LdV~svqsS~~dg-~l~~ti~aKv~~~~~~s~~~IkqAL~~vi~ 654 (656)
.|-+.. +.++|.|.++|..|...|+..+...|--..+ ..-+.|-+.+. . ..-..+++||..+-.
T Consensus 188 sl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~--~~d~~v~~aL~~L~~ 255 (267)
T 2qmw_A 188 SLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-S--AITTDIKKVIAILET 255 (267)
T ss_dssp EEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-C--CSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-c--CCcHHHHHHHHHHHH
Confidence 344555 6889999999999999999999998864332 22333444444 2 222467777776543
No 88
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=20.26 E-value=55 Score=26.33 Aligned_cols=21 Identities=43% Similarity=0.480 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhccccC
Q 006217 497 IKYLKKLEARVEELESCMYSV 517 (656)
Q Consensus 497 I~Yik~L~~~v~~Le~~~~~l 517 (656)
-.||..|+.+|..||..+..+
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999887644
No 89
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=20.04 E-value=2.1e+02 Score=27.61 Aligned_cols=54 Identities=13% Similarity=0.207 Sum_probs=39.0
Q ss_pred EEEeCCeEEEEEE-ccCCCChHHHHHHHHHccCCeEEEEE--eec-CCceEEEEEEEE
Q 006217 580 VSIQEMDVLIEMR-CPSREYILLDIMDAINNLHLDAYSVV--SSN-LDGVLTLALKST 633 (656)
Q Consensus 580 V~i~e~dvlIeI~-C~~r~glL~~Im~aL~~L~LdV~svq--sS~-~dg~l~~ti~aK 633 (656)
|....+.++|.|. .+.++|.+.+|+.+|.+.++.|-.+. +|. .++...+++.+.
T Consensus 29 Ia~~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~ 86 (200)
T 4go7_X 29 VAHDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCS 86 (200)
T ss_dssp EEEECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEE
T ss_pred EEccCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecc
Confidence 4456777888886 68999999999999999888877643 232 345656666665
Done!