BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006218
(656 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y253|POLH_HUMAN DNA polymerase eta OS=Homo sapiens GN=POLH PE=1 SV=1
Length = 713
Score = 235 bits (600), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 138/346 (39%), Positives = 194/346 (56%), Gaps = 15/346 (4%)
Query: 1 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLT 60
M D+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y+DLT
Sbjct: 63 MWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLT 122
Query: 61 DAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADH 113
A + L + P S D + ++ G + + K ++ +WL D+
Sbjct: 123 SAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDN 182
Query: 114 ---RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 170
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V S
Sbjct: 183 LTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGS 242
Query: 171 VKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIA 230
V L +PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL+ +
Sbjct: 243 VPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMC 302
Query: 231 RGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 290
RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+
Sbjct: 303 RGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRV 362
Query: 291 AHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 335
A L + D R + C L RY K+ D F + +
Sbjct: 363 ATQLVVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 404
>sp|Q9JJN0|POLH_MOUSE DNA polymerase eta OS=Mus musculus GN=Polh PE=1 SV=1
Length = 694
Score = 215 bits (548), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 150/405 (37%), Positives = 212/405 (52%), Gaps = 39/405 (9%)
Query: 1 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLT 60
M D+AK++CP + L QV +RGKA+L+ YR A EV+ I++ ERASIDE Y+DLT
Sbjct: 63 MWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSYFAVIERASIDEAYIDLT 122
Query: 61 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKE--------------WL 106
A + E L ++ + + + +L +G TV+E WL
Sbjct: 123 SAVQ--------ERLQKLQGQPISADLLPSTYIEGLPRGPTVEETVQKEAIRKQGLLQWL 174
Query: 107 CRCDAD---HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQ 163
+D D L G +IV E+R + +T F CSAGI+HNK+LAKLA G+NKP +Q
Sbjct: 175 DSLQSDDPTSPDLRLTVGAMIVEEMRAAIESKTGFQCSAGISHNKVLAKLACGLNKPNRQ 234
Query: 164 TTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTG 223
T V SV L +PI+K++ LGGKLG S+ LG+ +GDL +F+E +LQ +G G
Sbjct: 235 TLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEVLGIEYMGDLTQFTESQLQSHFGEKNG 294
Query: 224 TWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD 283
+WL+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL EL ERL D
Sbjct: 295 SWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLALELEERLTKD 354
Query: 284 LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFL 342
N R+A L + D R + C L RY K+ +D F A +R
Sbjct: 355 RNDNDRVATQLVVSIRF----QGDRRLSSLRRCCALPRYDAHKMSQDAF----AAIRN-C 405
Query: 343 GSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 387
+ G++T+ S +T L + A+K C+ + F D
Sbjct: 406 NTSGIQTEWSP----PLTMLFLCATKFSAAAPPACTDITAFLSSD 446
>sp|O42917|ESO1_SCHPO N-acetyltransferase eso1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=eso1 PE=1 SV=1
Length = 872
Score = 111 bits (278), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 145/309 (46%), Gaps = 29/309 (9%)
Query: 5 EAKEVCPQIELVQVPVARG----------------KADLSSYRNAGSEVVSILARKG-RC 47
EAK+ CP++ V + K L YR+ ++++I+ +
Sbjct: 82 EAKKKCPELCTAHVKTWKAGESEAKYHENPNPNYYKTCLDPYRHESVKILNIIKKHAPVV 141
Query: 48 ERASIDEVYLDLT-DAAEAMLAETPPESLDEVDEEAL--KSHILGLESKDGNDSKATVKE 104
++ASIDE +++LT D +L E P + D ++ +L ++ G +E
Sbjct: 142 KKASIDECFIELTSDVKRIVLEEYPYLKIPSEDSNVALPQAPVLLWPAEFG---MVIEEE 198
Query: 105 WLCRCDADHR----DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP 160
+ R D+ D L IV E+R + + ++TCSAG++ N ML+KL S NKP
Sbjct: 199 VVDRTKEDYERDWDDVFLFYAAKIVKEIRDDIYLQLKYTCSAGVSFNPMLSKLVSSRNKP 258
Query: 161 AQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 220
+QT + ++++ L SL I ++ LGGK G + N LG ++ D+ S D L + G
Sbjct: 259 NKQTILTKNAIQDYLVSLKITDIRMLGGKFGEEIINLLGTDSIKDVWNMSMDFLIDKLGQ 318
Query: 221 NTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 280
G +WN+ GI E+ ++ KS S K+F + +K+ +W +L R
Sbjct: 319 TNGPLVWNLCHGIDNTEITTQVQIKSMLSAKNF-SQQKVKSEEDAINWFQVFASDLRSRF 377
Query: 281 CSDLEQNKR 289
+LE +R
Sbjct: 378 L-ELEGMRR 385
>sp|Q6R3M4|POLI_MOUSE DNA polymerase iota OS=Mus musculus GN=Poli PE=1 SV=1
Length = 717
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 137/321 (42%), Gaps = 38/321 (11%)
Query: 1 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 59
M +AKE CPQ+ LV DLS YR +V +L ER DE ++DL
Sbjct: 79 MNVRDAKEKCPQLVLV------NGEDLSRYREMSYKVTELLEEFSPAVERLGFDENFVDL 132
Query: 60 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 119
T+ E L + P E EV + H+ N+ + + HR L
Sbjct: 133 TEMVEKRLQQLPSE---EVPSVTVFGHVY-------NNQSVNLHNIM------HRR--LV 174
Query: 120 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 178
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 175 VGSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 234
Query: 179 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 238
IK++ +G K L+ LG+ +V DL F L++ G + ++ G V
Sbjct: 235 HIKEIPGIGYKTAKRLEV-LGINSVHDLQTFPIKTLEKELGIAIAQRIQQLSFGEDKSPV 293
Query: 239 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 298
P+S +F + + + + +L L R+C Q+ R HT+ L
Sbjct: 294 TPSGPPQSFSEEDTF---KKCSSEVEAKAKIEELLSSLLTRVC----QDGRKPHTVRLVI 346
Query: 299 SAFKSSDSDSRKKFPSKSCPL 319
+ SD S+ CP+
Sbjct: 347 RRY----SDKHCNRESRQCPI 363
>sp|A3EWL3|REV1_ARATH DNA repair protein REV1 OS=Arabidopsis thaliana GN=REV1 PE=2 SV=1
Length = 1105
Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 96/364 (26%), Positives = 147/364 (40%), Gaps = 75/364 (20%)
Query: 6 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEVYLDLTDAAE 64
AK++CPQ LV VP + +Y + IL R R +A S DE +LD++D
Sbjct: 435 AKDLCPQ--LVIVPY-----NFEAYEEVADQFYDILHRHCRKVQALSCDEAFLDVSD--- 484
Query: 65 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 124
L +V+ E L S I
Sbjct: 485 ----------LSDVETEVLASTI------------------------------------- 497
Query: 125 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 184
R ++L+ T + SAGI ++A+LA+ + KPA Q + V+ LD LP+ +
Sbjct: 498 ----RNEILETTGCSASAGIGGTMLMARLATRVAKPAGQLYISAEKVEEFLDQLPVGTLP 553
Query: 185 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 244
+G L L + + T G L S+D LQ+ +G TG LW+ +RG+ V A
Sbjct: 554 GVGSVLKEKLVKQ-NIQTCGQLRLISKDSLQKDFGVKTGEMLWSYSRGLDLRSVTAVQES 612
Query: 245 KSHGS----GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASA 300
KS G+ G F + + + VQH+L LC+E+S R L+ + I T TL
Sbjct: 613 KSIGAEVNWGVRFRDQQDVFIL--VQHFLQCLCKEVSLR----LQGCEMIGRTFTLKIKK 666
Query: 301 FKSSDSDSRKKFPSKSCP--LRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWR 358
K + K C R T D + Q ++ GSF + + G +
Sbjct: 667 RKKDAEEPTKYMGCGDCDNLSRSITVPAATDDIEVLQRISKKLFGSFCLDVKEVRGVGLQ 726
Query: 359 ITAL 362
++ L
Sbjct: 727 VSKL 730
>sp|Q9UNA4|POLI_HUMAN DNA polymerase iota OS=Homo sapiens GN=POLI PE=1 SV=3
Length = 740
Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 139/321 (43%), Gaps = 37/321 (11%)
Query: 1 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 59
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 104 MNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 157
Query: 60 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 119
T+ E L + DE+ + H+ +S + D H L
Sbjct: 158 TEMVEKRLQQL---QSDELSAVTVSGHVYNNQS-------------INLLDVLHIR--LL 199
Query: 120 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 178
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 200 VGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 259
Query: 179 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 238
IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G V
Sbjct: 260 HIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPV 318
Query: 239 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 298
P+S SF + + ++ + +L L R+C Q+ R HT+ L
Sbjct: 319 ILSGPPQSFSEEDSF---KKCSSEVEAKNKIEELLASLLNRVC----QDGRKPHTVRLII 371
Query: 299 SAFKSSDSDSRKKFPSKSCPL 319
+ S R+ S+ CP+
Sbjct: 372 RRYSSEKHYGRE---SRQCPI 389
>sp|P58963|DPO4_ESCFE DNA polymerase IV (Fragment) OS=Escherichia fergusonii GN=dinB PE=3
SV=1
Length = 331
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 117/283 (41%), Gaps = 72/283 (25%)
Query: 6 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAE 64
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 51 ALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 103
Query: 65 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 124
C A LI
Sbjct: 104 ------------------------------------------CHGSA----------TLI 111
Query: 125 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 184
E+R + E + T SAGIA K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 112 AQEIRQTIFNELQLTASAGIAPVKFLAKIASDMNKPNGQFVITPADVPAFLQTLPLAKIP 171
Query: 185 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 244
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 172 GV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLR 229
Query: 245 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 287
KS G ++ + HW CE + ERL +LE+
Sbjct: 230 KSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 262
>sp|Q1RFU0|DPO4_ECOUT DNA polymerase IV OS=Escherichia coli (strain UTI89 / UPEC) GN=dinB
PE=3 SV=1
Length = 351
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 117/283 (41%), Gaps = 72/283 (25%)
Query: 6 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAE 64
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 62 ALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 114
Query: 65 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 124
C A LI
Sbjct: 115 ------------------------------------------CHGSA----------TLI 122
Query: 125 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 184
E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182
Query: 185 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 244
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 183 GV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLR 240
Query: 245 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 287
KS G ++ + HW CE + ERL +LE+
Sbjct: 241 KSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|Q0TL85|DPO4_ECOL5 DNA polymerase IV OS=Escherichia coli O6:K15:H31 (strain 536 /
UPEC) GN=dinB PE=3 SV=1
Length = 351
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 117/283 (41%), Gaps = 72/283 (25%)
Query: 6 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAE 64
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 62 ALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 114
Query: 65 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 124
C A LI
Sbjct: 115 ------------------------------------------CHGSA----------TLI 122
Query: 125 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 184
E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182
Query: 185 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 244
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 183 GV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLR 240
Query: 245 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 287
KS G ++ + HW CE + ERL +LE+
Sbjct: 241 KSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|A1A7U2|DPO4_ECOK1 DNA polymerase IV OS=Escherichia coli O1:K1 / APEC GN=dinB PE=3
SV=1
Length = 351
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 117/283 (41%), Gaps = 72/283 (25%)
Query: 6 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAE 64
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 62 ALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 114
Query: 65 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 124
C A LI
Sbjct: 115 ------------------------------------------CHGSA----------TLI 122
Query: 125 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 184
E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182
Query: 185 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 244
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 183 GV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLR 240
Query: 245 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 287
KS G ++ + HW CE + ERL +LE+
Sbjct: 241 KSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|Q3Z5A4|DPO4_SHISS DNA polymerase IV OS=Shigella sonnei (strain Ss046) GN=dinB PE=3
SV=1
Length = 351
Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 117/283 (41%), Gaps = 72/283 (25%)
Query: 6 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAE 64
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 62 ALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 114
Query: 65 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 124
C A LI
Sbjct: 115 ------------------------------------------CHGSA----------TLI 122
Query: 125 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 184
E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182
Query: 185 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 244
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 183 GV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLR 240
Query: 245 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 287
KS G ++ + HW CE + ERL +LE+
Sbjct: 241 KSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|Q47155|DPO4_ECOLI DNA polymerase IV OS=Escherichia coli (strain K12) GN=dinB PE=1
SV=1
Length = 351
Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 117/283 (41%), Gaps = 72/283 (25%)
Query: 6 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAE 64
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 62 ALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 114
Query: 65 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 124
C A LI
Sbjct: 115 ------------------------------------------CHGSA----------TLI 122
Query: 125 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 184
E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182
Query: 185 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 244
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 183 GV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLR 240
Query: 245 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 287
KS G ++ + HW CE + ERL +LE+
Sbjct: 241 KSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|B1J100|DPO4_ECOLC DNA polymerase IV OS=Escherichia coli (strain ATCC 8739 / DSM 1576
/ Crooks) GN=dinB PE=3 SV=1
Length = 351
Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 117/283 (41%), Gaps = 72/283 (25%)
Query: 6 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAE 64
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 62 ALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 114
Query: 65 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 124
C A LI
Sbjct: 115 ------------------------------------------CHGSA----------TLI 122
Query: 125 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 184
E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182
Query: 185 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 244
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 183 GV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLR 240
Query: 245 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 287
KS G ++ + HW CE + ERL +LE+
Sbjct: 241 KSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|Q83M86|DPO4_SHIFL DNA polymerase IV OS=Shigella flexneri GN=dinB PE=3 SV=1
Length = 351
Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 118/283 (41%), Gaps = 72/283 (25%)
Query: 6 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAE 64
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 62 ALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 114
Query: 65 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 124
C A LI
Sbjct: 115 ------------------------------------------CHGSA----------TLI 122
Query: 125 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 184
E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP++K+
Sbjct: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLEKIP 182
Query: 185 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 244
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 183 GV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLR 240
Query: 245 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 287
KS G ++ + HW CE + ERL +LE+
Sbjct: 241 KSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|A7ZHZ2|DPO4_ECO24 DNA polymerase IV OS=Escherichia coli O139:H28 (strain E24377A /
ETEC) GN=dinB PE=3 SV=1
Length = 351
Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 117/283 (41%), Gaps = 72/283 (25%)
Query: 6 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAE 64
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 62 ALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 114
Query: 65 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 124
C A LI
Sbjct: 115 ------------------------------------------CHGSA----------TLI 122
Query: 125 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 184
E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 123 AQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182
Query: 185 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 244
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 183 GV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLR 240
Query: 245 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 287
KS G ++ + HW CE + ERL +LE+
Sbjct: 241 KSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|B2U3S3|DPO4_SHIB3 DNA polymerase IV OS=Shigella boydii serotype 18 (strain CDC
3083-94 / BS512) GN=dinB PE=3 SV=1
Length = 354
Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 117/283 (41%), Gaps = 72/283 (25%)
Query: 6 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAE 64
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 65 ALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 117
Query: 65 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 124
C A LI
Sbjct: 118 ------------------------------------------CHGSA----------TLI 125
Query: 125 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 184
E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 126 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 185
Query: 185 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 244
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 186 GV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLR 243
Query: 245 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 287
KS G ++ + HW CE + ERL +LE+
Sbjct: 244 KSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 276
>sp|P59477|DPO4_ECOL6 DNA polymerase IV OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=dinB PE=3 SV=1
Length = 351
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 117/283 (41%), Gaps = 72/283 (25%)
Query: 6 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAE 64
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 62 ALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 114
Query: 65 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 124
C A LI
Sbjct: 115 ------------------------------------------CHGSA----------TLI 122
Query: 125 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 184
E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182
Query: 185 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 244
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 183 GV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLR 240
Query: 245 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 287
KS G ++ + HW CE + ERL +LE+
Sbjct: 241 KSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|A7ZWJ6|DPO4_ECOHS DNA polymerase IV OS=Escherichia coli O9:H4 (strain HS) GN=dinB
PE=3 SV=1
Length = 351
Score = 84.0 bits (206), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 117/283 (41%), Gaps = 72/283 (25%)
Query: 6 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAE 64
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 62 ALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 114
Query: 65 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 124
C A LI
Sbjct: 115 ------------------------------------------CHGSA----------TLI 122
Query: 125 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 184
E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 123 AQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182
Query: 185 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 244
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 183 GV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLR 240
Query: 245 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 287
KS G ++ + HW CE + ERL +LE+
Sbjct: 241 KSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|Q32J17|DPO4_SHIDS DNA polymerase IV OS=Shigella dysenteriae serotype 1 (strain Sd197)
GN=dinB PE=3 SV=1
Length = 351
Score = 84.0 bits (206), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 117/283 (41%), Gaps = 72/283 (25%)
Query: 6 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAE 64
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 62 ALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 114
Query: 65 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 124
C A LI
Sbjct: 115 ------------------------------------------CHGSA----------TLI 122
Query: 125 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 184
E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 123 AQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 182
Query: 185 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 244
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 183 GV-GKVSAAKLEAIGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLR 240
Query: 245 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 287
KS G ++ + HW CE + ERL +LE+
Sbjct: 241 KSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|Q8DXW9|DPO4_STRA5 DNA polymerase IV OS=Streptococcus agalactiae serotype V (strain
ATCC BAA-611 / 2603 V/R) GN=dinB PE=3 SV=1
Length = 364
Score = 83.6 bits (205), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 122/297 (41%), Gaps = 68/297 (22%)
Query: 1 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 59
M EA E CPQ + + YR G EV I + E SIDE YLD+
Sbjct: 70 MSSKEAYERCPQAIFIS-------GNYQKYRQVGMEVRDIFKKYTDLVEPMSIDEAYLDV 122
Query: 60 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 119
T E+K G +
Sbjct: 123 T------------------------------ENKMG----------------------IK 130
Query: 120 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 179
V + ++ + + TCSAGI++NK LAKLAS KP T + + L LP
Sbjct: 131 SAVKLAKMIQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQDFLKPLP 190
Query: 180 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 239
I+K +G + L + LGV T DLL SE L + +G G L+ ARGI+ V+
Sbjct: 191 IEKFHGVGKRSVEKL-HALGVYTGEDLLSLSEISLIDMFG-RFGYDLYRKARGINASPVK 248
Query: 240 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 296
+ KS GS K++ + L A ++ +++ +R+ + LE+NK++ T+ L
Sbjct: 249 PDRVRKSIGSEKTY--GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIVL 299
>sp|Q8E3I8|DPO4_STRA3 DNA polymerase IV OS=Streptococcus agalactiae serotype III (strain
NEM316) GN=dinB PE=3 SV=1
Length = 364
Score = 83.6 bits (205), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 122/297 (41%), Gaps = 68/297 (22%)
Query: 1 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 59
M EA E CPQ + + YR G EV I + E SIDE YLD+
Sbjct: 70 MSSKEAYERCPQAIFIS-------GNYQKYRQVGMEVRDIFKKYTDLVEPMSIDEAYLDV 122
Query: 60 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 119
T E+K G +
Sbjct: 123 T------------------------------ENKMG----------------------IK 130
Query: 120 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 179
V + ++ + + TCSAGI++NK LAKLAS KP T + + L LP
Sbjct: 131 SAVKLAKMIQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQDFLKPLP 190
Query: 180 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 239
I+K +G + L + LGV T DLL SE L + +G G L+ ARGI+ V+
Sbjct: 191 IEKFHGVGKRSVEKL-HALGVYTGEDLLSLSEISLIDMFG-RFGYDLYRKARGINASPVK 248
Query: 240 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 296
+ KS GS K++ + L A ++ +++ +R+ + LE+NK++ T+ L
Sbjct: 249 PDRVRKSIGSEKTY--GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIVL 299
>sp|Q3JZG9|DPO4_STRA1 DNA polymerase IV OS=Streptococcus agalactiae serotype Ia (strain
ATCC 27591 / A909 / CDC SS700) GN=dinB PE=3 SV=1
Length = 364
Score = 83.6 bits (205), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 122/297 (41%), Gaps = 68/297 (22%)
Query: 1 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 59
M EA E CPQ + + YR G EV I + E SIDE YLD+
Sbjct: 70 MSSKEAYERCPQAIFIS-------GNYQKYRQVGMEVRDIFKKYTDLVEPMSIDEAYLDV 122
Query: 60 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 119
T E+K G +
Sbjct: 123 T------------------------------ENKMG----------------------IK 130
Query: 120 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 179
V + ++ + + TCSAGI++NK LAKLAS KP T + + L LP
Sbjct: 131 SAVKLAKMIQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQDFLKPLP 190
Query: 180 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 239
I+K +G + L + LGV T DLL SE L + +G G L+ ARGI+ V+
Sbjct: 191 IEKFHGVGKRSVEKL-HALGVYTGEDLLSLSEISLIDMFG-RFGYDLYRKARGINASPVK 248
Query: 240 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 296
+ KS GS K++ + L A ++ +++ +R+ + LE+NK++ T+ L
Sbjct: 249 PDRVRKSIGSEKTY--GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIVL 299
>sp|Q8X7Q1|DPO4_ECO57 DNA polymerase IV OS=Escherichia coli O157:H7 GN=dinB PE=3 SV=1
Length = 351
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 116/283 (40%), Gaps = 72/283 (25%)
Query: 6 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAE 64
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 62 ALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 114
Query: 65 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 124
C A LI
Sbjct: 115 ------------------------------------------CHGSA----------TLI 122
Query: 125 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 184
E+R + E + T SAG+ K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 123 AQEIRQTIFSELQLTASAGVTPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTLPLAKIP 182
Query: 185 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 244
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 183 GV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLR 240
Query: 245 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 287
KS G ++ + HW CE + ERL +LE+
Sbjct: 241 KSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|Q5PF76|DPO4_SALPA DNA polymerase IV OS=Salmonella paratyphi A (strain ATCC 9150 /
SARB42) GN=dinB PE=3 SV=1
Length = 351
Score = 79.3 bits (194), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 105 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 164
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 165 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 224
+ + V G L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPGFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 225 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 284
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 285 EQNKRIA 291
E+ I
Sbjct: 271 ERRLAIV 277
>sp|Q0TQ38|DPO4_CLOP1 DNA polymerase IV OS=Clostridium perfringens (strain ATCC 13124 /
NCTC 8237 / Type A) GN=dinB PE=3 SV=1
Length = 359
Score = 79.3 bits (194), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 6/180 (3%)
Query: 123 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 182
L+ E++ ++ KE T SAG++ NK LAK+AS KP T + + K + ++PI K
Sbjct: 124 LMALEIKERIFKEVGLTASAGVSFNKFLAKMASDFRKPDGITVITEENSKDFIRNIPIGK 183
Query: 183 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 242
+G L N +GV DLLKFSE++L + + + G L+ ARGI V
Sbjct: 184 FFGVGRVTKNKLNN-IGVFKGEDLLKFSEEELIDIFS-DRGKILYEFARGIDNRPVNPYR 241
Query: 243 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 302
+ KS GK ++ + + L ++ E +SE LC ++ K + TL + + FK
Sbjct: 242 IRKS--IGKEITLREDIEDIDEMIEILERIAERVSESLCLLNKKGKTV--TLKVKFNDFK 297
>sp|Q5LYC2|DPO4_STRT1 DNA polymerase IV OS=Streptococcus thermophilus (strain CNRZ 1066)
GN=dinB PE=3 SV=1
Length = 367
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 105/254 (41%), Gaps = 62/254 (24%)
Query: 1 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDL 59
M EA E CP + + S YR G ++ I E SIDE YLD+
Sbjct: 70 MSSKEAYERCPNAVFIS-------GNYSHYREVGMQIREIFKCYTDLVEPMSIDEAYLDV 122
Query: 60 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 119
T ++ LG++S
Sbjct: 123 T------------------------TNKLGIKS--------------------------- 131
Query: 120 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 179
V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L+ LP
Sbjct: 132 -AVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQDFLEKLP 190
Query: 180 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 239
I+K +G K L +++ + T DLLK SE L + +G G L+ ARGIS V+
Sbjct: 191 IEKFHGVGKKSVERL-HDMDIYTGADLLKISEITLIDRFG-RFGFDLFRKARGISNSPVK 248
Query: 240 ARLLPKSHGSGKSF 253
+ KS GS +++
Sbjct: 249 PNRVRKSIGSERTY 262
>sp|Q57SU1|DPO4_SALCH DNA polymerase IV OS=Salmonella choleraesuis (strain SC-B67)
GN=dinB PE=3 SV=1
Length = 351
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 105 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 164
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 165 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 224
+ + V G L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPGFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 225 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 284
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 285 EQNKRIA 291
E+ I
Sbjct: 271 ERRLAIV 277
>sp|B4SIF5|DPO4_STRM5 DNA polymerase IV OS=Stenotrophomonas maltophilia (strain R551-3)
GN=dinB PE=3 SV=1
Length = 356
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 88/173 (50%), Gaps = 9/173 (5%)
Query: 124 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 183
I +R Q+ +ET+ T SAGIA NK LAK+AS KP Q +P V L LP+ ++
Sbjct: 124 IARTIRAQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLLPLPVNRV 183
Query: 184 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 243
+G + L G+ T GDL +++ L+E++G + G L+N ARG+ V+
Sbjct: 184 PGVGKVMEGKLAAR-GIVTCGDLRQWALIDLEEAFG-SFGRSLYNRARGVDERPVEPDQQ 241
Query: 244 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 296
+S S +F L+ L + +L+E+ + + +R+ HT+ L
Sbjct: 242 VQSISSEDTFAEDLPLED-------LGEAIVQLAEKTWNATRKTERVGHTVVL 287
>sp|Q8NZI1|DPO4_STRP8 DNA polymerase IV OS=Streptococcus pyogenes serotype M18 (strain
MGAS8232) GN=dinB PE=3 SV=1
Length = 364
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 122/300 (40%), Gaps = 74/300 (24%)
Query: 1 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 59
M EA E CP+ + + YR G ++ I R E SIDE YLD+
Sbjct: 70 MSSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDLVEPMSIDEAYLDV 122
Query: 60 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 119
TD LG++S
Sbjct: 123 TDNK------------------------LGIKS--------------------------- 131
Query: 120 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 179
V I ++ + KE TCSAG+++NK LAKLAS KP T V L LP
Sbjct: 132 -AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLP 190
Query: 180 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 239
I+K +G K L +++G+ T DLL E L + +G G L+ ARGIS V+
Sbjct: 191 IEKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVK 248
Query: 240 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 296
+ + KS GS +++ A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 249 SDRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTIVL 299
>sp|A2RCQ1|DPO4_STRPG DNA polymerase IV OS=Streptococcus pyogenes serotype M5 (strain
Manfredo) GN=dinB PE=3 SV=1
Length = 364
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 122/300 (40%), Gaps = 74/300 (24%)
Query: 1 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 59
M EA E CP+ + + YR G ++ I R E SIDE YLD+
Sbjct: 70 MSSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDLVEPMSIDEAYLDV 122
Query: 60 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 119
TD LG++S
Sbjct: 123 TDNK------------------------LGIKS--------------------------- 131
Query: 120 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 179
V I ++ + KE TCSAG+++NK LAKLAS KP T V L LP
Sbjct: 132 -AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLP 190
Query: 180 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 239
I+K +G K L +++G+ T DLL E L + +G G L+ ARGIS V+
Sbjct: 191 IEKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVK 248
Query: 240 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 296
+ + KS GS +++ A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 249 SDRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTIVL 299
>sp|P0DA79|DPO4_STRPQ DNA polymerase IV OS=Streptococcus pyogenes serotype M3 (strain
SSI-1) GN=dinB PE=3 SV=1
Length = 365
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 122/300 (40%), Gaps = 74/300 (24%)
Query: 1 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 59
M EA E CP+ + + YR G ++ I R E SIDE YLD+
Sbjct: 70 MSSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDV 122
Query: 60 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 119
TD LG++S
Sbjct: 123 TDNK------------------------LGIKS--------------------------- 131
Query: 120 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 179
V I ++ + KE TCSAG+++NK LAKLAS KP T V L LP
Sbjct: 132 -AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLP 190
Query: 180 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 239
I+K +G K L +++G+ T DLL E L + +G G L+ ARGIS V+
Sbjct: 191 IEKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVK 248
Query: 240 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 296
+ + KS GS +++ A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 249 SDRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVVALLQDHKKLGKTIVL 299
>sp|Q1JF59|DPO4_STRPD DNA polymerase IV OS=Streptococcus pyogenes serotype M2 (strain
MGAS10270) GN=dinB PE=3 SV=1
Length = 364
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 122/300 (40%), Gaps = 74/300 (24%)
Query: 1 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 59
M EA E CP+ + + YR G ++ I R E SIDE YLD+
Sbjct: 70 MSSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDV 122
Query: 60 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 119
TD LG++S
Sbjct: 123 TDNK------------------------LGIKS--------------------------- 131
Query: 120 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 179
V I ++ + KE TCSAG+++NK LAKLAS KP T V L LP
Sbjct: 132 -AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLP 190
Query: 180 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 239
I+K +G K L +++G+ T DLL E L + +G G L+ ARGIS V+
Sbjct: 191 IEKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVK 248
Query: 240 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 296
+ + KS GS +++ A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 249 SDRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTIVL 299
>sp|P0DA78|DPO4_STRP3 DNA polymerase IV OS=Streptococcus pyogenes serotype M3 (strain
ATCC BAA-595 / MGAS315) GN=dinB PE=3 SV=1
Length = 365
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 122/300 (40%), Gaps = 74/300 (24%)
Query: 1 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 59
M EA E CP+ + + YR G ++ I R E SIDE YLD+
Sbjct: 70 MSSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDV 122
Query: 60 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 119
TD LG++S
Sbjct: 123 TDNK------------------------LGIKS--------------------------- 131
Query: 120 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 179
V I ++ + KE TCSAG+++NK LAKLAS KP T V L LP
Sbjct: 132 -AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLP 190
Query: 180 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 239
I+K +G K L +++G+ T DLL E L + +G G L+ ARGIS V+
Sbjct: 191 IEKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVK 248
Query: 240 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 296
+ + KS GS +++ A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 249 SDRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVVALLQDHKKLGKTIVL 299
>sp|Q2YU32|DPO4_STAAB DNA polymerase IV OS=Staphylococcus aureus (strain bovine RF122 /
ET3-1) GN=dinB PE=3 SV=1
Length = 328
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 2/130 (1%)
Query: 124 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 183
I +R +L+ T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILENTHLTASAGVSYNKFLAKLASGMNKPYGMTVIDYQNVHDILMTLDIGDF 183
Query: 184 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 243
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 244 PKSHGSGKSF 253
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>sp|P58964|DPO4_STAAW DNA polymerase IV OS=Staphylococcus aureus (strain MW2) GN=dinB
PE=3 SV=1
Length = 356
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 124 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 183
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 183
Query: 184 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 243
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 244 PKSHGSGKSF 253
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>sp|Q6G838|DPO4_STAAS DNA polymerase IV OS=Staphylococcus aureus (strain MSSA476) GN=dinB
PE=3 SV=1
Length = 356
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 124 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 183
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 183
Query: 184 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 243
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 244 PKSHGSGKSF 253
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>sp|A6QIC3|DPO4_STAAE DNA polymerase IV OS=Staphylococcus aureus (strain Newman) GN=dinB
PE=3 SV=1
Length = 356
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 124 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 183
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 183
Query: 184 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 243
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 244 PKSHGSGKSF 253
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>sp|Q5HEM7|DPO4_STAAC DNA polymerase IV OS=Staphylococcus aureus (strain COL) GN=dinB
PE=3 SV=1
Length = 356
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 124 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 183
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 183
Query: 184 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 243
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 244 PKSHGSGKSF 253
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>sp|Q6GFG2|DPO4_STAAR DNA polymerase IV OS=Staphylococcus aureus (strain MRSA252) GN=dinB
PE=3 SV=1
Length = 356
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 124 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 183
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYRNVHDILMTLDIGDF 183
Query: 184 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 243
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSTRV 241
Query: 244 PKSHGSGKSF 253
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>sp|A4VZ21|DPO4_STRS2 DNA polymerase IV OS=Streptococcus suis (strain 98HAH33) GN=dinB
PE=3 SV=1
Length = 355
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 120/297 (40%), Gaps = 68/297 (22%)
Query: 1 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 59
M EA E CPQ + + Y+ G +V I R E SIDE YLD+
Sbjct: 70 MSSKEAYERCPQAIFIS-------GNYEKYQEVGRQVREIFHRYTDLVEPMSIDEAYLDV 122
Query: 60 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 119
T E+K G ++
Sbjct: 123 T------------------------------ENKLG----------------------IS 130
Query: 120 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 179
V I ++ + E T SAG+++NK LAK+AS M KP T + G+L SLP
Sbjct: 131 SAVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEDAVGILASLP 190
Query: 180 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 239
++K +G K L +E+GV T DLL E L + +G G L+ ARGIS V+
Sbjct: 191 VEKFHGVGKKTVERL-HEMGVYTGQDLLDVPEMVLIDRFG-RFGFDLYRKARGISNSPVK 248
Query: 240 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 296
+ KS G +++ + L V L LC +R+ + L++N + T+ L
Sbjct: 249 VDRVRKSSGKERTY--RKLLYREEDVLKELISLC----QRVAASLKRNGKKGRTIVL 299
>sp|Q99Y66|DPO4_STRP1 DNA polymerase IV OS=Streptococcus pyogenes serotype M1 GN=dinB
PE=3 SV=1
Length = 364
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 121/300 (40%), Gaps = 74/300 (24%)
Query: 1 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 59
M EA E CP+ + + YR G ++ I R E SIDE YLD+
Sbjct: 70 MSSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDV 122
Query: 60 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 119
TD LG++S
Sbjct: 123 TDNK------------------------LGIKS--------------------------- 131
Query: 120 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 179
V I ++ + KE TCSAG+++NK LAKLAS KP T V L LP
Sbjct: 132 -AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLP 190
Query: 180 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 239
I+K +G K L +++G+ T DLL E L + +G G L+ ARGIS V+
Sbjct: 191 IEKFHGVGKKSVKKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVK 248
Query: 240 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 296
+ KS GS +++ A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 249 YDRIRKSIGSERTY---------AKLLYQETDIKAEISKNVKRVAALLQDHKKLGKTIVL 299
>sp|Q67QM6|DPO4_SYMTH DNA polymerase IV OS=Symbiobacterium thermophilum (strain T / IAM
14863) GN=dinB PE=3 SV=1
Length = 361
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 8/176 (4%)
Query: 121 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 180
V + EL+ + E T SAG+++ K LAKLAS M KP T + + + LL +LP+
Sbjct: 117 AVRVARELKEAIRAELHLTGSAGVSYCKFLAKLASDMQKPDGLTVITWERAQELLPTLPV 176
Query: 181 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 240
+K+ +G +L + LG+ T GDLL + D L++ +G L +ARGI V
Sbjct: 177 RKLWGVGPASEQAL-HALGIYTCGDLLAYDPDTLRKHFG-KRADELILLARGIDPRPVVP 234
Query: 241 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 296
KS G +FP + + +L++L E ++ L +L + A T+T+
Sbjct: 235 YREAKSIGEENTFP------VDQTDREYLSRLLERYADNLAEELRRQGLYARTVTV 284
>sp|A5IU61|DPO4_STAA9 DNA polymerase IV OS=Staphylococcus aureus (strain JH9) GN=dinB
PE=3 SV=1
Length = 356
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 124 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 183
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDF 183
Query: 184 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 243
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 244 PKSHGSGKSF 253
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>sp|A6U2Z9|DPO4_STAA2 DNA polymerase IV OS=Staphylococcus aureus (strain JH1) GN=dinB
PE=3 SV=1
Length = 356
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 124 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 183
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDF 183
Query: 184 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 243
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 244 PKSHGSGKSF 253
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>sp|P63992|DPO4_STAAN DNA polymerase IV OS=Staphylococcus aureus (strain N315) GN=dinB
PE=3 SV=1
Length = 356
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 124 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 183
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDF 183
Query: 184 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 243
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 244 PKSHGSGKSF 253
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>sp|P63991|DPO4_STAAM DNA polymerase IV OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=dinB PE=3 SV=1
Length = 356
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 124 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 183
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDF 183
Query: 184 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 243
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 244 PKSHGSGKSF 253
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>sp|A7X420|DPO4_STAA1 DNA polymerase IV OS=Staphylococcus aureus (strain Mu3 / ATCC
700698) GN=dinB PE=3 SV=1
Length = 356
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 124 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 183
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDF 183
Query: 184 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 243
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 244 PKSHGSGKSF 253
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>sp|A4TPK8|DPO4_YERPP DNA polymerase IV OS=Yersinia pestis (strain Pestoides F) GN=dinB
PE=3 SV=1
Length = 352
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 71/139 (51%), Gaps = 5/139 (3%)
Query: 118 LACG---VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 174
LACG LI E+R + E T SAGIA K LAK+AS +NKP Q + + ++
Sbjct: 113 LACGGSATLIAQEIRQSIASELNLTASAGIAPIKFLAKIASELNKPNGQYVITPNQIQPF 172
Query: 175 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 234
L LP+ K+ +G LQ LG+ T GD+ K+ +L + +G G LW + GI
Sbjct: 173 LQDLPLSKIPGVGAVTAKRLQ-ALGLVTCGDIQKYPLAELLKHFG-KFGRVLWERSHGID 230
Query: 235 GEEVQARLLPKSHGSGKSF 253
E+ L KS G K+
Sbjct: 231 EREISPDRLRKSVGVEKTL 249
>sp|Q1CLD4|DPO4_YERPN DNA polymerase IV OS=Yersinia pestis bv. Antiqua (strain Nepal516)
GN=dinB PE=3 SV=1
Length = 352
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 71/139 (51%), Gaps = 5/139 (3%)
Query: 118 LACG---VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 174
LACG LI E+R + E T SAGIA K LAK+AS +NKP Q + + ++
Sbjct: 113 LACGGSATLIAQEIRQSIASELNLTASAGIAPIKFLAKIASELNKPNGQYVITPNQIQPF 172
Query: 175 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 234
L LP+ K+ +G LQ LG+ T GD+ K+ +L + +G G LW + GI
Sbjct: 173 LQDLPLSKIPGVGAVTAKRLQ-ALGLVTCGDIQKYPLAELLKHFG-KFGRVLWERSHGID 230
Query: 235 GEEVQARLLPKSHGSGKSF 253
E+ L KS G K+
Sbjct: 231 EREISPDRLRKSVGVEKTL 249
>sp|Q8ZBZ9|DPO4_YERPE DNA polymerase IV OS=Yersinia pestis GN=dinB PE=3 SV=1
Length = 352
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 71/139 (51%), Gaps = 5/139 (3%)
Query: 118 LACG---VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 174
LACG LI E+R + E T SAGIA K LAK+AS +NKP Q + + ++
Sbjct: 113 LACGGSATLIAQEIRQSIASELNLTASAGIAPIKFLAKIASELNKPNGQYVITPNQIQPF 172
Query: 175 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 234
L LP+ K+ +G LQ LG+ T GD+ K+ +L + +G G LW + GI
Sbjct: 173 LQDLPLSKIPGVGAVTAKRLQ-ALGLVTCGDIQKYPLAELLKHFG-KFGRVLWERSHGID 230
Query: 235 GEEVQARLLPKSHGSGKSF 253
E+ L KS G K+
Sbjct: 231 EREISPDRLRKSVGVEKTL 249
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.128 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 244,024,797
Number of Sequences: 539616
Number of extensions: 10323295
Number of successful extensions: 25373
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 24511
Number of HSP's gapped (non-prelim): 643
length of query: 656
length of database: 191,569,459
effective HSP length: 124
effective length of query: 532
effective length of database: 124,657,075
effective search space: 66317563900
effective search space used: 66317563900
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)