Query 006218
Match_columns 656
No_of_seqs 283 out of 1840
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 19:10:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006218.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006218hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ecq_A DNA polymerase ETA; tra 100.0 5.2E-57 1.8E-61 496.6 31.0 355 1-371 66-434 (435)
2 3osn_A DNA polymerase IOTA; ho 100.0 5.4E-57 1.9E-61 494.3 30.5 331 1-373 79-417 (420)
3 3gqc_A DNA repair protein REV1 100.0 8.6E-56 2.9E-60 493.1 29.1 296 1-373 195-499 (504)
4 1jx4_A DNA polymerase IV (fami 100.0 5.6E-56 1.9E-60 475.6 25.4 292 1-384 59-351 (352)
5 3bq0_A POL IV, DBH, DNA polyme 100.0 8.9E-56 3.1E-60 474.4 26.5 292 1-384 59-353 (354)
6 3mfi_A DNA polymerase ETA; DNA 100.0 9.8E-56 3.4E-60 495.2 27.0 345 1-373 82-517 (520)
7 4f4y_A POL IV, DNA polymerase 100.0 1.4E-55 4.9E-60 474.6 26.3 294 1-385 59-354 (362)
8 4dez_A POL IV 1, DNA polymeras 100.0 4.9E-56 1.7E-60 476.7 18.5 284 1-372 61-346 (356)
9 3pzp_A DNA polymerase kappa; D 100.0 3E-54 1E-58 483.3 26.6 338 1-373 141-509 (517)
10 1t94_A Polymerase (DNA directe 100.0 2.5E-54 8.7E-59 478.2 19.6 340 1-373 85-453 (459)
11 2aq4_A DNA repair protein REV1 100.0 3.4E-52 1.1E-56 458.3 26.0 294 1-371 112-433 (434)
12 1im4_A DBH; DNA polymerase PAL 100.0 2.7E-38 9.2E-43 318.7 15.8 157 1-216 64-221 (221)
13 1unn_C POL IV, DNA polymerase 99.0 2.7E-10 9.3E-15 102.7 7.3 106 245-382 5-113 (115)
14 2a1j_A DNA repair endonuclease 96.1 0.0067 2.3E-07 48.8 4.9 51 180-232 6-57 (63)
15 1wcn_A Transcription elongatio 95.9 0.0036 1.2E-07 51.5 2.8 52 180-232 9-62 (70)
16 2kwv_A RAD30 homolog B, DNA po 95.6 0.0057 2E-07 45.8 2.3 21 609-629 14-34 (48)
17 1z00_B DNA repair endonuclease 94.7 0.02 6.7E-07 48.8 3.4 51 180-232 20-71 (84)
18 3bqs_A Uncharacterized protein 94.2 0.024 8.2E-07 49.2 2.9 35 179-214 5-39 (93)
19 3mab_A Uncharacterized protein 93.8 0.042 1.4E-06 47.7 3.7 34 179-213 5-38 (93)
20 1b22_A DNA repair protein RAD5 92.8 0.056 1.9E-06 48.6 3.0 57 177-234 22-82 (114)
21 1z3e_B DNA-directed RNA polyme 91.4 0.16 5.5E-06 42.1 3.9 53 176-230 7-61 (73)
22 1kft_A UVRC, excinuclease ABC 91.1 0.12 4E-06 42.8 2.9 50 178-229 24-75 (78)
23 2a1j_B DNA excision repair pro 91.1 0.17 5.9E-06 43.1 3.9 50 180-231 34-85 (91)
24 1z00_A DNA excision repair pro 90.4 0.2 6.9E-06 42.4 3.8 51 180-232 21-73 (89)
25 3gfk_B DNA-directed RNA polyme 90.1 0.15 5E-06 42.9 2.6 54 173-228 11-66 (79)
26 1vq8_Y 50S ribosomal protein L 89.1 0.074 2.5E-06 53.8 0.0 52 178-230 15-68 (241)
27 2khu_A Immunoglobulin G-bindin 89.1 0.14 4.9E-06 44.3 1.7 29 610-638 67-96 (108)
28 3k4g_A DNA-directed RNA polyme 88.5 0.42 1.4E-05 40.8 4.3 53 176-230 10-64 (86)
29 2nrt_A Uvrabc system protein C 87.1 0.36 1.2E-05 48.2 3.5 50 178-229 168-218 (220)
30 1ci4_A Protein (barrier-TO-aut 85.1 0.53 1.8E-05 40.3 3.0 33 175-208 15-47 (89)
31 2va8_A SSO2462, SKI2-type heli 84.0 0.39 1.3E-05 55.0 2.4 52 178-231 657-708 (715)
32 2kz3_A Putative uncharacterize 83.4 2.2 7.7E-05 36.0 6.2 43 177-220 3-45 (83)
33 1coo_A RNA polymerase alpha su 83.2 0.58 2E-05 40.9 2.5 52 177-230 23-76 (98)
34 1pzn_A RAD51, DNA repair and r 83.1 0.99 3.4E-05 47.6 4.8 54 177-231 34-89 (349)
35 3im1_A Protein SNU246, PRE-mRN 81.2 1.4 4.9E-05 45.9 5.2 61 178-239 157-219 (328)
36 1x2i_A HEF helicase/nuclease; 79.9 1.1 3.9E-05 35.8 3.1 50 180-231 16-67 (75)
37 2i1q_A DNA repair and recombin 79.8 1.2 4.2E-05 45.8 4.0 55 178-233 3-59 (322)
38 2p6r_A Afuhel308 helicase; pro 79.7 0.61 2.1E-05 53.4 1.9 52 178-231 632-683 (702)
39 2q0z_X Protein Pro2281; SEC63, 77.3 2 6.8E-05 45.1 4.8 59 178-237 161-221 (339)
40 2zj8_A DNA helicase, putative 77.1 1.7 5.9E-05 49.8 4.6 51 178-231 646-696 (720)
41 1ixr_A Holliday junction DNA h 74.4 1.2 4.2E-05 43.3 2.1 54 180-233 74-130 (191)
42 1gm5_A RECG; helicase, replica 74.2 1.4 4.9E-05 51.5 3.0 31 178-209 115-145 (780)
43 1cuk_A RUVA protein; DNA repai 70.6 1.7 5.8E-05 42.7 2.0 54 180-233 75-131 (203)
44 1dgs_A DNA ligase; AMP complex 69.5 3.2 0.00011 47.7 4.4 51 179-229 442-494 (667)
45 2bgw_A XPF endonuclease; hydro 69.0 3.1 0.0001 40.8 3.5 50 180-231 164-215 (219)
46 2fmp_A DNA polymerase beta; nu 68.8 2.2 7.4E-05 45.0 2.5 29 180-209 100-128 (335)
47 2z43_A DNA repair and recombin 68.3 1 3.6E-05 46.6 0.0 42 178-220 12-53 (324)
48 2bcq_A DNA polymerase lambda; 66.6 2.8 9.5E-05 44.2 2.8 27 181-208 99-125 (335)
49 3lda_A DNA repair protein RAD5 66.2 3.9 0.00014 44.0 4.0 57 174-231 77-137 (400)
50 2owo_A DNA ligase; protein-DNA 66.2 4 0.00014 47.0 4.2 53 177-229 445-499 (671)
51 2ihm_A POL MU, DNA polymerase 63.6 3.5 0.00012 43.9 2.9 28 180-208 104-131 (360)
52 3c65_A Uvrabc system protein C 63.1 1.5 5.2E-05 43.8 0.0 52 177-230 172-224 (226)
53 1jms_A Terminal deoxynucleotid 62.5 3.6 0.00012 44.1 2.8 28 180-208 123-150 (381)
54 2duy_A Competence protein come 62.1 5.1 0.00017 32.5 3.0 29 181-209 30-58 (75)
55 3ai4_A Yeast enhanced green fl 62.0 2.2 7.5E-05 43.5 1.0 24 609-632 249-273 (283)
56 2e8m_A Epidermal growth factor 58.4 10 0.00035 33.0 4.4 52 168-231 36-87 (99)
57 3sei_A Caskin-1; SAM domain, p 56.3 21 0.00071 33.0 6.5 76 134-221 48-123 (149)
58 3tvk_A DGC, diguanylate cyclas 53.0 19 0.00066 34.0 5.9 25 122-146 98-130 (179)
59 4glx_A DNA ligase; inhibitor, 52.5 9.5 0.00033 43.2 4.1 50 180-230 448-500 (586)
60 2ztd_A Holliday junction ATP-d 48.6 10 0.00035 37.4 3.2 52 183-234 93-147 (212)
61 4f92_B U5 small nuclear ribonu 47.0 12 0.00041 47.7 4.2 60 178-238 1557-1618(1724)
62 4gfj_A Topoisomerase V; helix- 44.6 19 0.00064 39.1 4.6 49 180-233 470-518 (685)
63 1v5w_A DMC1, meiotic recombina 44.0 4.8 0.00016 42.0 0.0 52 179-231 26-81 (343)
64 3b0x_A DNA polymerase beta fam 43.2 8.6 0.0003 43.2 1.9 80 143-236 100-180 (575)
65 1u9l_A Transcription elongatio 42.0 17 0.0006 29.5 3.1 48 183-231 11-60 (70)
66 1wwu_A Hypothetical protein FL 40.7 24 0.00083 30.7 3.9 53 168-231 26-78 (99)
67 3arc_U Photosystem II 12 kDa e 38.7 22 0.00075 30.7 3.4 30 180-209 28-57 (97)
68 2w9m_A Polymerase X; SAXS, DNA 38.3 13 0.00045 41.8 2.4 28 180-208 99-126 (578)
69 2bcq_A DNA polymerase lambda; 36.6 15 0.0005 38.6 2.3 52 180-236 59-120 (335)
70 3vdp_A Recombination protein R 36.6 19 0.00066 35.5 2.9 16 180-195 28-43 (212)
71 3b0x_A DNA polymerase beta fam 35.1 18 0.00061 40.6 2.9 51 181-231 96-149 (575)
72 3hva_A Protein FIMX; ggdef dig 33.4 1E+02 0.0035 27.5 7.3 25 122-146 109-141 (177)
73 1s5l_U Photosystem II 12 kDa e 32.4 30 0.001 31.7 3.4 39 165-210 56-95 (134)
74 1vdd_A Recombination protein R 30.8 26 0.00089 34.9 2.8 16 180-195 14-29 (228)
75 2edu_A Kinesin-like protein KI 30.8 23 0.0008 30.1 2.2 29 181-209 43-75 (98)
76 3r8n_M 30S ribosomal protein S 29.5 38 0.0013 30.1 3.4 36 180-215 18-53 (114)
77 3u5c_S 40S ribosomal protein S 28.2 37 0.0013 31.5 3.3 42 178-219 30-74 (146)
78 3ign_A Diguanylate cyclase; gg 25.7 80 0.0027 28.3 5.1 25 122-146 104-136 (177)
79 2owo_A DNA ligase; protein-DNA 24.7 40 0.0014 38.7 3.4 32 184-217 518-549 (671)
80 2xzm_M RPS18E; ribosome, trans 24.0 44 0.0015 31.4 2.9 40 180-219 32-74 (155)
81 1w25_A Stalked-cell differenti 23.9 77 0.0026 33.5 5.3 25 122-146 384-418 (459)
82 2ihm_A POL MU, DNA polymerase 23.9 36 0.0012 36.0 2.6 55 180-236 63-126 (360)
83 3iz6_M 40S ribosomal protein S 23.8 47 0.0016 31.1 3.1 39 180-218 30-71 (152)
84 4f92_B U5 small nuclear ribonu 23.6 69 0.0024 40.8 5.5 60 177-238 725-785 (1724)
85 2vqe_M 30S ribosomal protein S 23.5 42 0.0014 30.4 2.6 29 180-208 19-50 (126)
86 3hvw_A Diguanylate-cyclase (DG 22.4 95 0.0032 28.1 5.0 25 122-146 94-125 (176)
87 2fmp_A DNA polymerase beta; nu 22.3 39 0.0013 35.4 2.4 55 180-236 59-122 (335)
88 3j20_O 30S ribosomal protein S 21.6 45 0.0016 31.0 2.5 39 180-218 25-66 (148)
89 2w9m_A Polymerase X; SAXS, DNA 20.8 36 0.0012 38.2 2.0 90 127-234 91-181 (578)
90 1jms_A Terminal deoxynucleotid 20.8 45 0.0015 35.6 2.6 55 180-236 82-145 (381)
91 3idw_A Actin cytoskeleton-regu 20.7 24 0.00083 28.9 0.4 36 592-627 12-47 (72)
92 2a6h_A DNA-directed RNA polyme 20.4 21 0.00073 37.2 0.0 49 177-227 253-303 (315)
93 3lu0_A DNA-directed RNA polyme 20.1 22 0.00075 37.4 0.0 48 177-226 254-303 (329)
94 3h7h_A Transcription elongatio 20.1 48 0.0017 29.8 2.2 28 602-629 71-106 (120)
95 1dgs_A DNA ligase; AMP complex 20.1 67 0.0023 36.9 4.0 52 172-228 504-557 (667)
No 1
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=100.00 E-value=5.2e-57 Score=496.56 Aligned_cols=355 Identities=38% Similarity=0.607 Sum_probs=282.3
Q ss_pred CcHHHHHHhCCCcEEEeccCcCCCCChHHHHHHHHHHHHHHhhcCCeEEecCceEEEEccchhHHHhccCCCCCcchhhH
Q 006218 1 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDE 80 (656)
Q Consensus 1 Mp~~~AkklCP~LivV~vP~~~~k~d~~~Yr~~S~~V~~IL~~~~~VE~~SIDEafLDlT~~~~~~L~~~~~~~l~~~~~ 80 (656)
||+++|+++||+++++++|..+|++||++|+++|++||+||.+|..||++||||+|||||+....++.+....... .
T Consensus 66 m~~~~A~~lcP~l~~~~~~~~~~~~~~~~Y~~~S~~i~~il~~~~~vE~~SiDEafLDlT~~~~~~l~~l~g~~~~---~ 142 (435)
T 4ecq_A 66 MWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLTSAVQERLQKLQGQPIS---A 142 (435)
T ss_dssp CBHHHHHHHCTTCEEEECCEETTEECCHHHHHHHHHHHHHHHHHSCEEEEETTEEEEECHHHHHHHHHHHTTCCCC---G
T ss_pred CcHHHHHHhCCCeEEeccccccCCCCHHHHHHHHHHHHHHHHhcCceeecccceEEEECccchhhcchhccccccc---c
Confidence 9999999999999999766556778999999999999999999989999999999999999875432211100000 0
Q ss_pred Hhh-hhhcccCcc----CCCCCch-----hhhhhhhhc---cCccchhhhhhhHHHHHHHHHHHHHHHhCCceeEeccCc
Q 006218 81 EAL-KSHILGLES----KDGNDSK-----ATVKEWLCR---CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHN 147 (656)
Q Consensus 81 e~~-~s~l~g~~~----~~g~~~~-----~~v~~w~~~---~~~~~~d~ll~~~~~iA~~IR~~I~~~tGlt~SiGIA~N 147 (656)
+.+ .+++.|... ..|.... .++..|++. .+.+|.|..|..|+.+|++||++|++++|||||||||+|
T Consensus 143 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ia~~Ir~~I~~~~Gl~~svGIa~n 222 (435)
T 4ecq_A 143 DLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHN 222 (435)
T ss_dssp GGCTTEEETTCSCCCC-----CSHHHHHHHHHHHHHHHCCTTCTTCHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEESS
T ss_pred ccccccccccCCCcccccccccchhhhhcccccccccccccccccchhhhhhHHHHHHHHHHHHHHHHhCCcEEEEecCC
Confidence 000 000001000 0000001 124456532 345678888889999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCeeecCcccHHhhcccCCCccccCCchHHHHH-HHHhcCCcchhhhhcCCHHHHHHhhcccchhhH
Q 006218 148 KMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS-LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 226 (656)
Q Consensus 148 KlLAKLAS~~~KP~G~~vl~~~~v~~fL~~LPI~kL~GIG~kt~~k-L~~~lGI~TigDLa~l~~~~L~~~FG~~~G~~L 226 (656)
|+|||||++++||+|+++|+++++.+||+++||++|||||++++.+ |. .+||+|+|||++++...|+++||.+.|.+|
T Consensus 223 k~lAKlAs~~~Kp~g~~vv~~~~~~~~L~~lpv~~l~GiG~~~~~~lL~-~lGI~TigdLa~~~~~~L~~~fG~~~g~~L 301 (435)
T 4ecq_A 223 KVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIE-ILGIEYMGELTQFTESQLQSHFGEKNGSWL 301 (435)
T ss_dssp HHHHHHHHHHSCSSCEEECCGGGHHHHHHTCBGGGSTTCSSHHHHHHHH-HHTCCBGGGGGGSCHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHhccCCCCceEEEehhHHHHHHhhCCHHHhcCCCHHHHHHHHH-HcCCCcHHHHhhCCHHHHHHHhCccHHHHH
Confidence 9999999999999999999999999999999999999999999877 65 999999999999999999999995579999
Q ss_pred HHHHhcCCCcccccccCCCcccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeEEEEEEeeccCCCC
Q 006218 227 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDS 306 (656)
Q Consensus 227 ~~~arGiD~~~V~~~~~~KSIs~~~tF~~~~~i~~~eel~~~L~~L~~eL~~RLr~~~~~~~~~a~tvtL~ir~~~~~~~ 306 (656)
|+.|+|+|+++|.+..++|||++++||+.+.++.+.+++..+|..|+++|+.||+++..++++.|++|+|++++....++
T Consensus 302 ~~~a~G~d~~~v~~~~~~ksi~~~~tf~~~~~i~~~~~l~~~l~~la~~l~~rLr~~~~~~~~~~~~l~v~ir~~~~~~~ 381 (435)
T 4ecq_A 302 YAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLVVSIRVQGDKRL 381 (435)
T ss_dssp HHHTTTCCCCCCCCBCSCSCEEEEEECCGGGCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEEEEEETTCCSS
T ss_pred HHHhhCCCCcccCCCCCCCeeeeeEEcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCceEEEEEEEEEeCCCCCC
Confidence 99999999999998888999999999984224889999999999999999999998654568999999999998643222
Q ss_pred CCCCCcCcceeeCCCcchhhHHhHHHHHHHHHHHHhcccCccccCCCCCCcceeEEEEEecCCee
Q 006218 307 DSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVP 371 (656)
Q Consensus 307 ~s~~~~~sks~~l~~~t~~I~~da~~L~~~al~ll~~~~~~~l~~~~~~~~~ir~lgVsls~L~~ 371 (656)
...+++++++.+ ++..|++.++.+|...+....+ ..-..+||.|||++++|++
T Consensus 382 ----~~~~R~~~l~~~------~~~~i~~~a~~L~~~~~~~~~~--~~~~~pir~lgvs~s~f~~ 434 (435)
T 4ecq_A 382 ----SSLRRCCALTRY------DAHKMSHDAFTVIKNCNTSGIQ--TEWSPPLTMLFLCATKFSA 434 (435)
T ss_dssp ----CSEEEEEECCSC------CHHHHHHHHHHHHGGGCCCSST--TEEEEEEEEEEEEEEEEEE
T ss_pred ----ceeEEeccCCCC------CHHHHHHHHHHHHHHHhhcccc--ccCCCCeeEEEEEEeeccc
Confidence 235899999764 3456777788888776532111 0113479999999999986
No 2
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=100.00 E-value=5.4e-57 Score=494.29 Aligned_cols=331 Identities=28% Similarity=0.386 Sum_probs=274.6
Q ss_pred CcHHHHHHhCCCcEEEeccCcCCCCChHHHHHHHHHHHHHHhhc-CCeEEecCceEEEEccchhHHHhccCCCCCcchhh
Q 006218 1 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTDAAEAMLAETPPESLDEVD 79 (656)
Q Consensus 1 Mp~~~AkklCP~LivV~vP~~~~k~d~~~Yr~~S~~V~~IL~~~-~~VE~~SIDEafLDlT~~~~~~L~~~~~~~l~~~~ 79 (656)
||+++|+++||+|++| | .+||+.|+++|++|++||.+| |.||++||||+|||+|++....+.+.+++.++
T Consensus 79 m~~~~A~~lcP~lv~v--~----~~~~~~Y~~~S~~i~~il~~~tp~ve~~SiDE~fLDvt~~~~~~l~~~~~~~~~--- 149 (420)
T 3osn_A 79 MNVRDAKEKCPQLVLV--N----GEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQSDELS--- 149 (420)
T ss_dssp EEHHHHHHHCTTCEEE--E----CCCCHHHHHHHHHHHHHHHHHCSCEEEETTTEEEEECHHHHHHHHHHSCSSSGG---
T ss_pred CcHHHHHHhCcccccc--C----CCCHHHHHHHHHHHHHHHHHhCCCeEEecCCEEEEECcccchhhcccccccccc---
Confidence 8999999999999888 4 149999999999999999998 89999999999999999875544433322211
Q ss_pred HHhhhhhcccCccCCCCCchhhhhhhhhccCccchhhhhhhHHHHHHHHHHHHHHHhCCceeEeccCcHHHHHHHhcCCC
Q 006218 80 EEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNK 159 (656)
Q Consensus 80 ~e~~~s~l~g~~~~~g~~~~~~v~~w~~~~~~~~~d~ll~~~~~iA~~IR~~I~~~tGlt~SiGIA~NKlLAKLAS~~~K 159 (656)
.....+|+||.... +..+|.+..+..+..+|++||++|+++||||||||||+||+|||||++++|
T Consensus 150 ~~~~~g~l~g~~~~---------------~~~~~~~~~l~~~~~la~~Ir~~I~~~~Glt~svGIa~nk~LAKlAs~~~K 214 (420)
T 3osn_A 150 AVTVSGHVYNNQSI---------------NLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFK 214 (420)
T ss_dssp GCCCCSEEGGGCCC---------------CTTCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHTSSC
T ss_pred cccccccccccccc---------------ccccchhhcchHHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHhhhhcC
Confidence 01122456653210 012355667778899999999999999999999999999999999999999
Q ss_pred CCCeeecCcccHHhhcccCC-CccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHhhcccchhhHHHHHhcCCCccc
Q 006218 160 PAQQTTVPFSSVKGLLDSLP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 238 (656)
Q Consensus 160 P~G~~vl~~~~v~~fL~~LP-I~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~FG~~~G~~L~~~arGiD~~~V 238 (656)
|+|++++.++++.+||+++| |++|||||++++++|. .+||+|+|||+++++..|+++||...|.+||++++|+|+++|
T Consensus 215 P~g~~vl~~~~~~~~L~~Lppv~~l~GIG~~t~~~L~-~lGI~TigdLa~~~~~~L~~~fG~~~g~~L~~~a~G~d~~~V 293 (420)
T 3osn_A 215 PNQQTVLLPESCQHLIHSLNHIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPV 293 (420)
T ss_dssp SSCEEECCGGGHHHHHHHCSSGGGSTTCCHHHHHHHH-HTTCCSHHHHHHSCHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred CCCeEEecHHHHHHhhccCccHHHccCCCHHHHHHHH-HhCCCcHHHHhhCCHHHHHHHhCchHHHHHHHHhcCCCcccc
Confidence 99999999999999999997 9999999999999997 999999999999999999999997679999999999999999
Q ss_pred ccccCCCcccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeEEEEEEeeccC-CCCCCCCCcCccee
Q 006218 239 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS-SDSDSRKKFPSKSC 317 (656)
Q Consensus 239 ~~~~~~KSIs~~~tF~~~~~i~~~eel~~~L~~L~~eL~~RLr~~~~~~~~~a~tvtL~ir~~~~-~~~~s~~~~~sks~ 317 (656)
.+..++|||+.++||. ++.+.+++..+|..|+++|+.||+++ ++.|++|+|+++++.. ..| ...++++
T Consensus 294 ~~~~~~kSi~~e~tf~---~~~~~~~~~~~l~~La~~l~~rLr~~----~~~~~tv~l~ir~~~~~~~~----~~~sr~~ 362 (420)
T 3osn_A 294 ILSGPPQSFSEEDSFK---KCSSEVEAKNKIEELLASLLNRVCQD----GRKPHTVRLIIRRYSSEKHY----GRESRQC 362 (420)
T ss_dssp CCCCSCSEEEEEEECS---SCCCSSSHHHHHHHHHHHHHHHHHHH----CSCEEEEEEEEEEECSSCCC----CCEEEEE
T ss_pred CCCCCCCceeeeeeCC---CCCCHHHHHHHHHHHHHHHHHHHHHc----CCcccEEEEEEEeCCCCCCC----ceeEEEE
Confidence 9888899999999997 47888999999999999999999975 9999999999996421 112 2358999
Q ss_pred eCCCcchh-----hHHhHHHHHHHHHHHHhcccCccccCCCCCCcceeEEEEEecCCeecc
Q 006218 318 PLRYGTAK-----IQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVL 373 (656)
Q Consensus 318 ~l~~~t~~-----I~~da~~L~~~al~ll~~~~~~~l~~~~~~~~~ir~lgVsls~L~~~~ 373 (656)
+++.++.. -++.+.+|+++++++|.++++. ..+++||+|||++++|.+.+
T Consensus 363 ~l~~~~~~~l~~~~t~~~~~i~~~a~~Lf~~~~~~------~~~~~iRllgv~~~~l~~~~ 417 (420)
T 3osn_A 363 PIPSHVIQKLGTGNYDVMTPMVDILMKLFRNMVNV------KMPFHLTLLSVCFCNLKALN 417 (420)
T ss_dssp ECCTTTCCC-----CTTHHHHHHHHHHHHHHHSCS------SSCCEEEEEEEEEEEEC---
T ss_pred ECCCccccccccCCCchHHHHHHHHHHHHHHhhcc------cCCcceeEEEEEEeCcccCc
Confidence 99876210 1246778999999999877631 23456999999999999875
No 3
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=100.00 E-value=8.6e-56 Score=493.13 Aligned_cols=296 Identities=23% Similarity=0.331 Sum_probs=264.7
Q ss_pred CcHHHHHHhCCCcEEEeccCcCCCCChHHHHHHHHHHHHHHhhc-CCeEEecCceEEEEccchhHHHhccCCCCCcchhh
Q 006218 1 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTDAAEAMLAETPPESLDEVD 79 (656)
Q Consensus 1 Mp~~~AkklCP~LivV~vP~~~~k~d~~~Yr~~S~~V~~IL~~~-~~VE~~SIDEafLDlT~~~~~~L~~~~~~~l~~~~ 79 (656)
||+++|+++||+|+++ | +||+.|+++|++|++||.+| |.||++||||+|||+|+...
T Consensus 195 Mp~~~A~~lcP~livv--~-----~d~~~Y~~~S~~i~~il~~~tp~VE~~SiDEafLDvtg~~~--------------- 252 (504)
T 3gqc_A 195 MFFGHAKQLCPNLQAV--P-----YDFHAYKEVAQTLYETLASYTHNIEAVSCDEALVDITEILA--------------- 252 (504)
T ss_dssp CBHHHHHHHCTTCEEE--C-----CCHHHHHHHHHHHHHHHHTTCSCEEEEETTEEEEECHHHHH---------------
T ss_pred CcHHHHHHhCCCcEEE--C-----CCHHHHHHHHHHHHHHHHHhCCeEEEecCCeEEEeccchHh---------------
Confidence 9999999999999987 5 89999999999999999998 89999999999999999752
Q ss_pred HHhhhhhcccCccCCCCCchhhhhhhhhccCccchhhhhhhHHHHHHHHHHHHHHHhCCceeEeccCcHHHHHHHhcCCC
Q 006218 80 EEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNK 159 (656)
Q Consensus 80 ~e~~~s~l~g~~~~~g~~~~~~v~~w~~~~~~~~~d~ll~~~~~iA~~IR~~I~~~tGlt~SiGIA~NKlLAKLAS~~~K 159 (656)
+||. .+..+|++||++|+++||||||||||+||+|||||++++|
T Consensus 253 -------l~g~-----------------------------~~~~la~~Ir~~I~~~tGlt~SvGIa~nk~LAKlAs~~~K 296 (504)
T 3gqc_A 253 -------ETKL-----------------------------TPDEFANAVRMEIKDQTKCAASVGIGSNILLARMATRKAK 296 (504)
T ss_dssp -------HHCC-----------------------------CHHHHHHHHHHHHHHHHSCCEEEEEESSHHHHHHHHHHHC
T ss_pred -------hcCC-----------------------------CHHHHHHHHHHHHHHHhCCcEEEEEeCCHHHHHHHHhhCc
Confidence 2221 1357899999999999999999999999999999999999
Q ss_pred CCCeeecCcccHHhhcccCCCccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHhhcccchhhHHHHHhcCCCcccc
Q 006218 160 PAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 239 (656)
Q Consensus 160 P~G~~vl~~~~v~~fL~~LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~FG~~~G~~L~~~arGiD~~~V~ 239 (656)
|+|+++|+++++.+||++|||++|||||++++++|. .+||+|||||+++++..|+++||...|.+||+.|+|+|+++|.
T Consensus 297 P~G~~vl~~~~~~~~L~~LPV~~l~GIG~~t~~kL~-~lGI~TigDLa~~~~~~L~~~fG~~~g~~L~~~a~GiD~~pV~ 375 (504)
T 3gqc_A 297 PDGQYHLKPEEVDDFIRGQLVTNLPGVGHSMESKLA-SLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVR 375 (504)
T ss_dssp SSCEEECCGGGHHHHHHHSBGGGSTTCCHHHHHHHH-HTTCCBHHHHTTSCHHHHHHHHCHHHHHHHHHHTTTCCCCCCC
T ss_pred cCCEEEECHHHHHHHHhcCChhHhhCcCHHHHHHHH-HcCCCcHHHHHhccHHHHHHhhChhHHHHHHHHhcCCCccccc
Confidence 999999999999999999999999999999999997 9999999999999999999999976799999999999999999
Q ss_pred cccCCCcccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeEEEEEEeeccC------CCCCCCC--C
Q 006218 240 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS------SDSDSRK--K 311 (656)
Q Consensus 240 ~~~~~KSIs~~~tF~~~~~i~~~eel~~~L~~L~~eL~~RLr~~~~~~~~~a~tvtL~ir~~~~------~~~~s~~--~ 311 (656)
+..++|||+.++||+ .++.+.+++..+|..|+++|+.||++ .++.|++|+|++++... .+|..+. +
T Consensus 376 ~~~~~KSi~~e~tf~--~d~~~~~~l~~~L~~La~~l~~rLr~----~~~~~~~vtLkl~~r~~d~~~~t~~f~~~g~~~ 449 (504)
T 3gqc_A 376 TEKERKSVSAEINYG--IRFTQPKEAEAFLLSLSEEIQRRLEA----TGMKGKRLTLKIMVRKPGAPVETAKFGGHGICD 449 (504)
T ss_dssp CCCCCCCEEEEECSS--CCCCSHHHHHHHHHHHHHHHHHHHHH----TTEEEEEEEEEEEEECTTSCSBCSSTTCCCSEE
T ss_pred cccCCcceeeeeccC--CCCCCHHHHHHHHHHHHHHHHHHHHH----cCCceeEEEEEEEEecccccccccccccCCCcc
Confidence 888899999999998 68999999999999999999999997 49999999999986421 2232221 2
Q ss_pred cCcceeeCCCcchhhHHhHHHHHHHHHHHHhcccCccccCCCCCCcceeEEEEEecCCeecc
Q 006218 312 FPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVL 373 (656)
Q Consensus 312 ~~sks~~l~~~t~~I~~da~~L~~~al~ll~~~~~~~l~~~~~~~~~ir~lgVsls~L~~~~ 373 (656)
..+++.+|+.+|+ ++..|++++..+|..++ ..+.+||+|||++++|.+..
T Consensus 450 ~~trs~tL~~pT~----d~~~I~~~A~~Ll~~~~--------~~~~~vRllGV~~s~L~~~~ 499 (504)
T 3gqc_A 450 NIARTVTLDQATD----NAKIIGKAMLNMFHTMK--------LNISDMRGVGIHVNQLVPTN 499 (504)
T ss_dssp EEEEEEEEEEEEC----CHHHHHHHHHHHHHTSC--------CCGGGEEEEEEEEEEEEECC
T ss_pred cceeEeecCCCcC----CHHHHHHHHHHHHHHhc--------CCCCCeEEEEEEEcCcccCC
Confidence 3578899998885 77889999998887653 24579999999999999863
No 4
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=100.00 E-value=5.6e-56 Score=475.61 Aligned_cols=292 Identities=24% Similarity=0.351 Sum_probs=254.5
Q ss_pred CcHHHHHHhCCCcEEEeccCcCCCCChHHHHHHHHHHHHHHhhc-CCeEEecCceEEEEccchhHHHhccCCCCCcchhh
Q 006218 1 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTDAAEAMLAETPPESLDEVD 79 (656)
Q Consensus 1 Mp~~~AkklCP~LivV~vP~~~~k~d~~~Yr~~S~~V~~IL~~~-~~VE~~SIDEafLDlT~~~~~~L~~~~~~~l~~~~ 79 (656)
||+++|+++||+++++ | +||+.|+++|++|++++.+| |.||++||||+|||+|+...
T Consensus 59 m~~~~A~~lcP~l~~~--~-----~~~~~Y~~~s~~i~~il~~~tp~ve~~SiDE~~lDvt~~~~--------------- 116 (352)
T 1jx4_A 59 IPIVEAKKILPNAVYL--P-----MRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVR--------------- 116 (352)
T ss_dssp SBHHHHHHHCTTSEEE--E-----CCHHHHHHHHHHHHHHHTTTCSCEEEEETTEEEEECTTTCS---------------
T ss_pred CcHHHHHHHCCCeEEE--C-----CCHHHHHHHHHHHHHHHHHhCCCeEEecCceEEEeccCccc---------------
Confidence 9999999999999998 4 89999999999999999998 89999999999999998641
Q ss_pred HHhhhhhcccCccCCCCCchhhhhhhhhccCccchhhhhhhHHHHHHHHHHHHHHHhCCceeEeccCcHHHHHHHhcCCC
Q 006218 80 EEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNK 159 (656)
Q Consensus 80 ~e~~~s~l~g~~~~~g~~~~~~v~~w~~~~~~~~~d~ll~~~~~iA~~IR~~I~~~tGlt~SiGIA~NKlLAKLAS~~~K 159 (656)
+| ..+..+|++||++|++++|||||||||+||++||||++++|
T Consensus 117 -------~~------------------------------~~~~~~a~~ir~~i~~~~Gl~~svGia~nk~lAKlAs~~~K 159 (352)
T 1jx4_A 117 -------DY------------------------------REAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAK 159 (352)
T ss_dssp -------SH------------------------------HHHHHHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHHHC
T ss_pred -------cc------------------------------ccHHHHHHHHHHHHHHHHCCcEEEEEcCCHHHHHHHhccCC
Confidence 11 23568999999999999999999999999999999999999
Q ss_pred CCCeeecCcccHHhhcccCCCccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHhhcccchhhHHHHHhcCCCcccc
Q 006218 160 PAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 239 (656)
Q Consensus 160 P~G~~vl~~~~v~~fL~~LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~FG~~~G~~L~~~arGiD~~~V~ 239 (656)
|+|+++|+++++.+||+++||+++||||++++++|+ .+||+|+|||++++...|+++||...|.++|+.|+|+|+++|.
T Consensus 160 p~g~~~~~~~~~~~~L~~lpv~~l~GiG~~~~~~L~-~~Gi~t~~dL~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~~v~ 238 (352)
T 1jx4_A 160 PNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLK-KLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIR 238 (352)
T ss_dssp SSCEEECCHHHHHHHHHHSBGGGSTTCCHHHHHHHH-TTTCCBGGGGGSSCHHHHHHHHCHHHHHHHHHHHTTCCCCCCC
T ss_pred CCCEEEECHHHHHHHHHhCCCCcccccCHHHHHHHH-HcCCchHHHHHCCCHHHHHHhcChhHHHHHHHHhCCCCCCCcc
Confidence 999999999999999999999999999999999997 9999999999999999999999984499999999999999999
Q ss_pred cccCCCcccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeEEEEEEeeccCCCCCCCCCcCcceeeC
Q 006218 240 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL 319 (656)
Q Consensus 240 ~~~~~KSIs~~~tF~~~~~i~~~eel~~~L~~L~~eL~~RLr~~~~~~~~~a~tvtL~ir~~~~~~~~s~~~~~sks~~l 319 (656)
+.. +|||+.++||+ .++.+.+++..+|..|+++|+.||++ . .+++|+|++++.+ |. ..+++.++
T Consensus 239 ~~~-~ksi~~~~tf~--~~~~~~~~l~~~l~~l~~~l~~rL~~-----~-~~~~v~l~l~~~~---~~----~~~~~~~l 302 (352)
T 1jx4_A 239 TRV-RKSIGRIVTMK--RNSRNLEEIKPYLFRAIEESYYKLDK-----R-IPKAIHVVAVTED---LD----IVSRGRTF 302 (352)
T ss_dssp CCC-CCEEEEEEEEE--EEECCHHHHHHHHHHHHHHHHHHHTT-----C-CEEEEEEEEEETT---SC----EEEEEEEC
T ss_pred CCC-CceEEeeeecC--CCCCCHHHHHHHHHHHHHHHHHHHHH-----h-cCCEEEEEEEECC---CC----cceeEEec
Confidence 888 99999999998 68999999999999999999999985 3 9999999999753 32 25788899
Q ss_pred CCcchhhHHhHHHHHHHHHHHHhcccCccccCCCCCCcceeEEEEEecCCeeccCcccccccccc
Q 006218 320 RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFN 384 (656)
Q Consensus 320 ~~~t~~I~~da~~L~~~al~ll~~~~~~~l~~~~~~~~~ir~lgVsls~L~~~~~~~~sq~~lF~ 384 (656)
+.+|+ ++..|++ +..+|...+. ..+.+||++||++++|.+. ..|.+||+
T Consensus 303 ~~pt~----~~~~l~~-a~~ll~~~~~-------~~~~~vr~lgv~~~~l~~~----~~q~~LF~ 351 (352)
T 1jx4_A 303 PHGIS----KETAYSE-SVKLLQKILE-------EDERKIRRIGVRFSKFIEA----IGLDKFFD 351 (352)
T ss_dssp SSCCC----HHHHHHH-HHHHHHHHHH-------HCCSCEEEEEEEEEEEC--------------
T ss_pred CCCCC----CHHHHHH-HHHHHHHHHh-------cCCCCEEEEEEEEeCCCCc----cccccccc
Confidence 88885 5667888 7777765431 0367999999999999875 35788985
No 5
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=100.00 E-value=8.9e-56 Score=474.36 Aligned_cols=292 Identities=22% Similarity=0.347 Sum_probs=254.9
Q ss_pred CcHHHHHHhCCCcEEEeccCcCCCCChHHHHHHHHHHHHHHhhc-CCeEEecCceEEEEccchhHHHhccCCCCCcchhh
Q 006218 1 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTDAAEAMLAETPPESLDEVD 79 (656)
Q Consensus 1 Mp~~~AkklCP~LivV~vP~~~~k~d~~~Yr~~S~~V~~IL~~~-~~VE~~SIDEafLDlT~~~~~~L~~~~~~~l~~~~ 79 (656)
||+++|+++||+++++ | +||+.|+++|++|++++.+| |.||++||||+|||+|+....
T Consensus 59 m~~~~A~~lcP~l~~~--~-----~~~~~Y~~~s~~i~~il~~~tp~ve~~SiDE~~lDvt~~~~~-------------- 117 (354)
T 3bq0_A 59 MPIIKAMQIAPSAIYV--P-----MRKPIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEG-------------- 117 (354)
T ss_dssp CBHHHHHHHCTTCEEE--E-----CCHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEECTTTTTT--------------
T ss_pred CcHHHHHHHCCCeEEE--C-----CCHHHHHHHHHHHHHHHHHhCCCEEEecCCeeEEecCcchhh--------------
Confidence 9999999999999998 4 89999999999999999998 899999999999999986410
Q ss_pred HHhhhhhcccCccCCCCCchhhhhhhhhccCccchhhhhhhHHHHHHHHHHHHHHHhCCceeEeccCcHHHHHHHhcCCC
Q 006218 80 EEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNK 159 (656)
Q Consensus 80 ~e~~~s~l~g~~~~~g~~~~~~v~~w~~~~~~~~~d~ll~~~~~iA~~IR~~I~~~tGlt~SiGIA~NKlLAKLAS~~~K 159 (656)
+| ..+..+|++||++|++++|||||||||+||+|||||++++|
T Consensus 118 -------~~------------------------------~~~~~la~~ir~~i~~~~Gl~~svGia~nk~lAKlAs~~~K 160 (354)
T 3bq0_A 118 -------NF------------------------------ENGIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSK 160 (354)
T ss_dssp -------CH------------------------------HHHHHHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTC
T ss_pred -------cc------------------------------CCHHHHHHHHHHHHHHHHCCcEEeeeccCHHHHHHHhccCC
Confidence 11 23568999999999999999999999999999999999999
Q ss_pred CCCeeecCcccHHhhcccCCCccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHhhcccchhhHHHHHhcCCCcccc
Q 006218 160 PAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 239 (656)
Q Consensus 160 P~G~~vl~~~~v~~fL~~LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~FG~~~G~~L~~~arGiD~~~V~ 239 (656)
|+|+++++++++.+||+++||++|||||++++++|+ .+||+|+|||++++...|+++||...|.++|+.|+|+|+++|.
T Consensus 161 p~g~~~~~~~~~~~~L~~lpv~~l~GiG~~~~~~L~-~~Gi~t~~dL~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~~v~ 239 (354)
T 3bq0_A 161 PNGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLN-ELGIQKLRDILSKNYNELEKITGKAKALYLLKLAQNKYSEPVE 239 (354)
T ss_dssp SSCEEECCGGGHHHHHHHCBSTTSTTCCHHHHHHHT-TTTCCBGGGGGGSCHHHHHHHHCHHHHHHHHHHHTTCCCCCCC
T ss_pred CCCEEEECHHHHHHHHHhCCcccccCcCHHHHHHHH-HcCCccHHHHhcCCHHHHHHHHCHHHHHHHHHHhCCCCCCCCc
Confidence 999999999999999999999999999999999997 9999999999999999999999984499999999999999999
Q ss_pred cccCCCcccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeEEEEEEeeccCCCCCCCCCcCcceeeC
Q 006218 240 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL 319 (656)
Q Consensus 240 ~~~~~KSIs~~~tF~~~~~i~~~eel~~~L~~L~~eL~~RLr~~~~~~~~~a~tvtL~ir~~~~~~~~s~~~~~sks~~l 319 (656)
+.. +|||+.++||+ .++.+.+++..+|..|+++|+.||+ . .+++|+|++++.+ |. ..+++.++
T Consensus 240 ~~~-~ksi~~~~tf~--~~~~~~~~l~~~l~~l~~~l~~rL~------~-~~~~v~l~~~~~~---~~----~~~~~~~l 302 (354)
T 3bq0_A 240 NKS-KIPHGRYLTLP--YNTRDVKVILPYLKKAINEAYNKVN------G-IPMRITVIAIMED---LD----ILSKGKKF 302 (354)
T ss_dssp SEE-CCCEEEEEEEE--EEECCHHHHHHHHHHHHHHHHTTTS------S-EEEEEEEEEEETT---SC----EEEEEEEC
T ss_pred CCC-CceeEEeEeCC--CCCCCHHHHHHHHHHHHHHHHHHHH------h-hCCEEEEEEEeCC---CC----cceEEEEC
Confidence 888 99999999998 6899999999999999999999997 3 8999999999753 32 25788889
Q ss_pred CCcchhhHHhHHHHHHHHHHHHhcccCccccCCCCCCc-c-eeEEEEEecCCeeccCcccccccccc
Q 006218 320 RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGW-R-ITALSVSASKIVPVLSGTCSIMKYFN 384 (656)
Q Consensus 320 ~~~t~~I~~da~~L~~~al~ll~~~~~~~l~~~~~~~~-~-ir~lgVsls~L~~~~~~~~sq~~lF~ 384 (656)
+.+|+ ++..|++ +..+|...+ ..+. + ||+|||++++|.+. ...|.+||+
T Consensus 303 ~~pt~----~~~~i~~-~~~ll~~~~--------~~~~~~~vr~lgv~~~~l~~~---~~~q~~LF~ 353 (354)
T 3bq0_A 303 KHGIS----IDNAYKV-AEDLLRELL--------VRDKRRNVRRIGVKLDNIIIN---KTNLSDFFD 353 (354)
T ss_dssp SSCCC----HHHHHHH-HHHHHHHHT--------TSCSSCCEEEEEEEEEEEECC------------
T ss_pred CCccC----CHHHHHH-HHHHHHHHh--------ccCCCCceEEEEEEEecCCCC---Ccccccccc
Confidence 88885 5677888 887777654 1244 8 99999999999876 256889995
No 6
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=100.00 E-value=9.8e-56 Score=495.17 Aligned_cols=345 Identities=25% Similarity=0.356 Sum_probs=275.0
Q ss_pred CcHHHHHHhCCCcEEEeccCc---------------------------CCCCChHHHHHHHHHHHHHHhhc-CCeEEecC
Q 006218 1 MRGDEAKEVCPQIELVQVPVA---------------------------RGKADLSSYRNAGSEVVSILARK-GRCERASI 52 (656)
Q Consensus 1 Mp~~~AkklCP~LivV~vP~~---------------------------~~k~d~~~Yr~~S~~V~~IL~~~-~~VE~~SI 52 (656)
||+++|+++||+|++|||+|. ++|+||++|+++|++||+||++| |.||+|||
T Consensus 82 ~~~~~A~~~CP~l~~v~~~v~~~ge~~~~y~~~~~~~~~~~~~~~~~~~~k~~~~~Yr~~S~~i~~il~~~~~~vE~~SI 161 (520)
T 3mfi_A 82 DTIQEALKKCSNLIPIHTAVFKKGEDFWQYHDGCGSWVQDPAKQISVEDHKVSLEPYRRESRKALAIFKWACDLVERASI 161 (520)
T ss_dssp CBHHHHHTTCTTCEEEECEEEETTCSCEECCTTCSTTCSCTTSCCCTTSEEEECHHHHHHHHHHHHHHHHHCSCEEEEET
T ss_pred CcHHHHHHhCccceEeeeeeeecccccccccccccccccccccccCcccccCCHHHHHHHHHHHHHHHHHhCCCeEEecc
Confidence 899999999999999876443 33469999999999999999998 89999999
Q ss_pred ceEEEEccchhHHHhccCCCC----Cc------chhh-----------------HHh-----hhhhcccCccCCCCCchh
Q 006218 53 DEVYLDLTDAAEAMLAETPPE----SL------DEVD-----------------EEA-----LKSHILGLESKDGNDSKA 100 (656)
Q Consensus 53 DEafLDlT~~~~~~L~~~~~~----~l------~~~~-----------------~e~-----~~s~l~g~~~~~g~~~~~ 100 (656)
||+|||||+...++|...... .+ ..+. ++. ..+++|+.. .
T Consensus 162 DEaflDlt~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~p~~~~~~~~~~~~g~~~~~~------~-- 233 (520)
T 3mfi_A 162 DEVFLDLGRICFNMLMFDNEYELTGDLKLKDALSNIREAFIGGNYDINSHLPLIPEKIKSLKFEGDVFNPE------G-- 233 (520)
T ss_dssp TEEEEECHHHHHHHHHHCSSCEEETTEEHHHHTHHHHHHHHHTCCCTTSEEECCCGGGGGCCCCSEECCTT------C--
T ss_pred ceEEEEcCcchhhccccccccccccccccccchhhhhhccccccccccccccccccchhcccccccccccc------c--
Confidence 999999999864443210000 00 0000 000 001111100 0
Q ss_pred hhhhhhhccCccchhhhhhhHHHHHHHHHHHHHHHhCCceeEeccCcHHHHHHHhcCCCCCCeeecCcccHHhhccc--C
Q 006218 101 TVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS--L 178 (656)
Q Consensus 101 ~v~~w~~~~~~~~~d~ll~~~~~iA~~IR~~I~~~tGlt~SiGIA~NKlLAKLAS~~~KP~G~~vl~~~~v~~fL~~--L 178 (656)
.....+|+|.++..+..+|++||++|+++||||||||||+||+||||||+++||+|+++|+++++.+||++ +
T Consensus 234 ------~~~~~~~~~~~~~~~~~ia~~IR~~I~~~tGlt~SvGIa~nK~LAKlAs~~~KP~G~~vi~~~~~~~fL~~~~l 307 (520)
T 3mfi_A 234 ------RDLITDWDDVILALGSQVCKGIRDSIKDILGYTTSCGLSSTKNVCKLASNYKKPDAQTIVKNDCLLDFLDCGKF 307 (520)
T ss_dssp ------CCSCCSHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHTTSCSSEEEECCGGGHHHHHTSSSC
T ss_pred ------ccccccccccccchHHHHHHHHHHHHHHHhCCcEEEEEeCCHHHHHHHhcccCCCCeEEcChHHHHHHhhccCC
Confidence 01234688899999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred CCccccCCchHHHHHHHHhc-CC---cch-----------hhhhcCCHHHHHHhhcc------------cchhhHHHHHh
Q 006218 179 PIKKMKQLGGKLGTSLQNEL-GV---TTV-----------GDLLKFSEDKLQESYGF------------NTGTWLWNIAR 231 (656)
Q Consensus 179 PI~kL~GIG~kt~~kL~~~l-GI---~Ti-----------gDLa~l~~~~L~~~FG~------------~~G~~L~~~ar 231 (656)
||++|||||++++++|. .+ || +|+ +||++++...|+++||. ..|.+||++|+
T Consensus 308 PV~~l~GIG~~t~~~L~-~llGI~~~~ti~~i~~l~~~t~~dL~~~~~~~L~~~fG~~~~~~~d~~~~g~~g~~L~~~ar 386 (520)
T 3mfi_A 308 EITSFWTLGGVLGKELI-DVLDLPHENSIKHIRETWPDNAGQLKEFLDAKVKQSDYDRSTSNIDPLKTADLAEKLFKLSR 386 (520)
T ss_dssp CGGGSTTCSSHHHHHHH-HHTTCCSSSHHHHHHHHSCSCHHHHHHHHHHHHHSTTCC---CCCCTTCHHHHHHHHHHHTT
T ss_pred cHHHhcCCCHHHHHHHH-HhcCCCcccchhhhhhccCCCHHHHHhcCHHHHHHhcCccccccccchhhhHHHHHHHHHhC
Confidence 99999999999999997 77 99 665 88888888999999994 47999999999
Q ss_pred cCCCcccccccCCCcccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh--hcCceeeEEEEEEeeccCCCCCCC
Q 006218 232 GISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE--QNKRIAHTLTLHASAFKSSDSDSR 309 (656)
Q Consensus 232 GiD~~~V~~~~~~KSIs~~~tF~~~~~i~~~eel~~~L~~L~~eL~~RLr~~~~--~~~~~a~tvtL~ir~~~~~~~~s~ 309 (656)
|+|+++|.+...+|||++++||+. .++.+.+++..+|..|+++|+.||+++.. ..++.|++|+|++++.+ |.+
T Consensus 387 Gid~~~V~~~~~~KSi~~~~tf~~-~~i~~~~~l~~~L~~la~~l~~rLr~~~~~~~~~~~~rtvtl~ir~~d---f~~- 461 (520)
T 3mfi_A 387 GRYGLPLSSRPVVKSMMSNKNLRG-KSCNSIVDCISWLEVFCAELTSRIQDLEQEYNKIVIPRTVSISLKTKS---YEV- 461 (520)
T ss_dssp TCCCCCCCCCCSCSCEEEEEECCT-TTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEEEECTT---CCE-
T ss_pred CCCCCCCCCCCCCCceeeEEEcCC-CCcCCHHHHHHHHHHHHHHHHHHHHhcccccccceeeeEEEEEEEeCC---CCc-
Confidence 999999999888999999999983 14899999999999999999999997421 12589999999999753 432
Q ss_pred CCcCcceeeCCCcchhhHHhHHHHHHHHHHHHhcccCccccCCCCCCcceeEEEEEecCCeecc
Q 006218 310 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVL 373 (656)
Q Consensus 310 ~~~~sks~~l~~~t~~I~~da~~L~~~al~ll~~~~~~~l~~~~~~~~~ir~lgVsls~L~~~~ 373 (656)
.+++.+++.+|.. +++..|++++.++|..++.. ++...+.+||+|||++++|....
T Consensus 462 ---~trs~~l~~pt~~--~~~~~I~~~a~~Ll~~~~~~---~~~~~~~~iRliGV~~s~Le~~~ 517 (520)
T 3mfi_A 462 ---YRKSGPVAYKGIN--FQSHELLKVGIKFVTDLDIK---GKNKSYYPLTKLSMTITNFDIID 517 (520)
T ss_dssp ---EEEEEECCCCCGG--GHHHHHHHHHHHHHHHHHHH---TTTSSCSSCSEEEEEEEEEEEEE
T ss_pred ---ceEEEECCCCCcc--CCHHHHHHHHHHHHHHHhhh---cccccCCceeEEEEEEeCCEecC
Confidence 5889999988821 25677888888888766520 00112579999999999998763
No 7
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=100.00 E-value=1.4e-55 Score=474.58 Aligned_cols=294 Identities=23% Similarity=0.354 Sum_probs=254.3
Q ss_pred CcHHHHHHhCCCcEEEeccCcCCCCChHHHHHHHHHHHHHHhhc-CCeEEecCceEEEEccchhHHHhccCCCCCcchhh
Q 006218 1 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTDAAEAMLAETPPESLDEVD 79 (656)
Q Consensus 1 Mp~~~AkklCP~LivV~vP~~~~k~d~~~Yr~~S~~V~~IL~~~-~~VE~~SIDEafLDlT~~~~~~L~~~~~~~l~~~~ 79 (656)
||+++|+++||+|+++ | +||+.|+++|++|+++|.+| |.||++||||+|||+|++...
T Consensus 59 m~~~~A~~lcP~l~~~--~-----~~~~~Y~~~s~~i~~il~~~tp~ve~~SiDEa~LDvt~~~~~-------------- 117 (362)
T 4f4y_A 59 MPIIKAMQIAPSAIYV--P-----MRKPIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEG-------------- 117 (362)
T ss_dssp CBHHHHHHHCTTSEEE--E-----CCHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEECTTTTTT--------------
T ss_pred CcHHHHHHHCCCeEEE--C-----CCHHHHHHHHHHHHHHHHHhCCCEEEecCceEEEecCCcccc--------------
Confidence 9999999999999988 5 89999999999999999998 899999999999999986410
Q ss_pred HHhhhhhcccCccCCCCCchhhhhhhhhccCccchhhhhhhHHHHHHHHHHHHHHHhCCceeEeccCcHHHHHHHhcCCC
Q 006218 80 EEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNK 159 (656)
Q Consensus 80 ~e~~~s~l~g~~~~~g~~~~~~v~~w~~~~~~~~~d~ll~~~~~iA~~IR~~I~~~tGlt~SiGIA~NKlLAKLAS~~~K 159 (656)
+| ..+..+|++||++|+++||||||||||+||++||||++++|
T Consensus 118 -------~~------------------------------~~~~~~a~~ir~~I~~~~Gl~~svGIa~nk~lAKlAs~~~K 160 (362)
T 4f4y_A 118 -------NF------------------------------ENGIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSK 160 (362)
T ss_dssp -------CH------------------------------HHHHHHHHHHHHHHHHHHCCCCEEEEESSHHHHHHHHHTSC
T ss_pred -------cc------------------------------CCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhccc
Confidence 11 22467999999999999999999999999999999999999
Q ss_pred CCCeeecCcccHHhhcccCCCccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHhhcccchhhHHHHHhcCCCcccc
Q 006218 160 PAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 239 (656)
Q Consensus 160 P~G~~vl~~~~v~~fL~~LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~FG~~~G~~L~~~arGiD~~~V~ 239 (656)
|+|+++++++++.+||+++||+++||||++++++|. .+||+|++||++++...|+++||...|.+||+.|+|+|+++|.
T Consensus 161 p~g~~~~~~~~~~~~L~~lpv~~l~GiG~~~~~~L~-~~GI~Ti~dL~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~~v~ 239 (362)
T 4f4y_A 161 PNGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLN-ELGIQKLRDILSKNYNELEKITGKAKALYLLKLAQDEYNEPIR 239 (362)
T ss_dssp SSCEEECCTTTHHHHHHTCBSTTSTTCCSTTHHHHH-HTTCCBGGGGTTSCHHHHHHHHCHHHHHHHHHHHTTCCCCCCC
T ss_pred CCCEEEECHHHHHHHHHhCChhhccCCCHHHHHHHH-HcCCChHHHHhcCCHHHHHHHhChHHHHHHHHHhcCCCCCcCc
Confidence 999999999999999999999999999999999997 9999999999999999999999944799999999999999999
Q ss_pred cccCCCcccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeEEEEEEeeccCCCCCCCCCcCcceeeC
Q 006218 240 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL 319 (656)
Q Consensus 240 ~~~~~KSIs~~~tF~~~~~i~~~eel~~~L~~L~~eL~~RLr~~~~~~~~~a~tvtL~ir~~~~~~~~s~~~~~sks~~l 319 (656)
+..+ |||+.++||+ .++.+.+++..+|..|+++|+.||+ . .|++|+|++++.+ |.. .+++.++
T Consensus 240 ~~~~-ksi~~~~tf~--~~~~~~~~l~~~l~~l~~~l~~rLr------~-~~~~v~l~i~~~~---~~~----~t~s~~l 302 (362)
T 4f4y_A 240 TRVR-KSIGRYLTLP--YNTRDVKVILPYLKKAINEAYNKVN------G-IPMRITVIAIMED---LDI----LSKGKKF 302 (362)
T ss_dssp CCCC-CEEEEEEEEE--EEECCHHHHHHHHHHHHHHHHHHCS------S-EEEEEEEEEEETT---SCE----EEEEEEC
T ss_pred cCCC-cceEEEEecC--CCCCCHHHHHHHHHHHHHHHHHHHH------h-CCCEEEEEEEECC---CcE----EEEEEEC
Confidence 8877 9999999998 6899999999999999999999997 3 9999999999754 332 4778888
Q ss_pred CCcchhhHHhHHHHHHHHHHHHhcccCccccCCCCCCcc-eeEEEEEecCCeeccCccccccccccC
Q 006218 320 RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWR-ITALSVSASKIVPVLSGTCSIMKYFNG 385 (656)
Q Consensus 320 ~~~t~~I~~da~~L~~~al~ll~~~~~~~l~~~~~~~~~-ir~lgVsls~L~~~~~~~~sq~~lF~~ 385 (656)
+.+ + ++..|++++.++|..++. ..+.+ ||++||++++|.+. ...|.++|+-
T Consensus 303 ~~p-~----d~~~i~~~a~~ll~~~~~-------~~~~~~vr~lGV~~~~L~~~---~~~q~~~~~~ 354 (362)
T 4f4y_A 303 KHG-I----SIDNAYKVAEDLLRELLV-------RDKRRNVRRIGVKLDNIIIN---KTNLSDFFDI 354 (362)
T ss_dssp SSC-C----CHHHHHHHHHHHHHHHTT-------SSCSCCEEEEEEEEEEEEC--------------
T ss_pred CCC-C----CHHHHHHHHHHHHHHHHh-------hcCCccEEEEEEEEeccccC---Cccccccccc
Confidence 877 5 566788888888876541 13667 99999999999876 3678889974
No 8
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=4.9e-56 Score=476.73 Aligned_cols=284 Identities=24% Similarity=0.316 Sum_probs=168.1
Q ss_pred CcHHHHHHhCCCcEEEeccCcCCCCChHHHHHHHHHHHHHHhhc-CCeEEecCceEEEEccchhHHHhccCCCCCcchhh
Q 006218 1 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTDAAEAMLAETPPESLDEVD 79 (656)
Q Consensus 1 Mp~~~AkklCP~LivV~vP~~~~k~d~~~Yr~~S~~V~~IL~~~-~~VE~~SIDEafLDlT~~~~~~L~~~~~~~l~~~~ 79 (656)
||+++|+++||+++++ | +||+.|+++|++|+++|.+| |.||++||||+|||+|+...
T Consensus 61 m~~~~A~~lcP~l~~~--~-----~~~~~Y~~~s~~v~~il~~~~p~ve~~SiDEafld~t~~~~--------------- 118 (356)
T 4dez_A 61 MPLRAAARRCPDATFL--P-----SDPAAYDEASEQVMGLLRDLGHPLEVWGWDEAYLGADLPDE--------------- 118 (356)
T ss_dssp SBHHHHHHHCTTCEEE--E-----CCHHHHHHHHHHHHHHHHTTSSCEEEETTTEEEEEEECCTT---------------
T ss_pred CcHHHHHHhCCCeEEE--C-----CcHHHHHHHHHHHHHHhhhcCCceeecCcchhheecccccC---------------
Confidence 8999999999999998 4 89999999999999999998 89999999999999997421
Q ss_pred HHhhhhhcccCccCCCCCchhhhhhhhhccCccchhhhhhhHHHHHHHHHHHHHHHhCCceeEeccCcHHHHHHHhcCCC
Q 006218 80 EEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNK 159 (656)
Q Consensus 80 ~e~~~s~l~g~~~~~g~~~~~~v~~w~~~~~~~~~d~ll~~~~~iA~~IR~~I~~~tGlt~SiGIA~NKlLAKLAS~~~K 159 (656)
..+..+|.+||++|+++||||||||||+||+|||||++++|
T Consensus 119 ---------------------------------------~~~~~~a~~ir~~i~~~~gl~~siGIa~nk~lAKlAs~~~K 159 (356)
T 4dez_A 119 ---------------------------------------SDPVEVAERIRTVVAAETGLSCSVGISDNKQRAKVATGFAK 159 (356)
T ss_dssp ---------------------------------------CCHHHHHHHHHHHHHHHHSCCEEEEEESSHHHHHHHHHHHC
T ss_pred ---------------------------------------CCHHHHHHHHHHHHHHHhCCccccchhccHHHHHHHHHHhh
Confidence 01357899999999999999999999999999999999999
Q ss_pred CCCeeecCcccHHhhcccCCCccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHhhcccchhhHHHHHhcCCCcccc
Q 006218 160 PAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 239 (656)
Q Consensus 160 P~G~~vl~~~~v~~fL~~LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~FG~~~G~~L~~~arGiD~~~V~ 239 (656)
|+|+++++++++.+||+++||++|||||++++++|+ .+||+|++||+++++..|+++||...|.+||++++|+|+++|.
T Consensus 160 p~g~~~i~~~~~~~~L~~lpv~~l~GiG~~~~~~L~-~~GI~Ti~dL~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~~v~ 238 (356)
T 4dez_A 160 PAGIYVLTEANWMTVMGDRPPDALWGVGPKTTKKLA-AMGITTVADLAVTDPSVLTTAFGPSTGLWLLLLAKGGGDTEVS 238 (356)
T ss_dssp SSCEEECCTTTHHHHHTTSCGGGSTTCCHHHHHHHH-HTTCCSHHHHHTSCHHHHHHHHCHHHHHHHHHHHTTCCCCCCC
T ss_pred hcCcccccchhhhhhhhcCcHHHHcCCchhHHHHHH-HcCCCeecccccCCHHHHHHHhCChHHHHHHHHHcCCCccccc
Confidence 999999999999999999999999999999999997 9999999999999999999999976799999999999999998
Q ss_pred cc-cCCCcccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeEEEEEEeeccCCCCCCCCCcCcceee
Q 006218 240 AR-LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCP 318 (656)
Q Consensus 240 ~~-~~~KSIs~~~tF~~~~~i~~~eel~~~L~~L~~eL~~RLr~~~~~~~~~a~tvtL~ir~~~~~~~~s~~~~~sks~~ 318 (656)
+. ..+|||++++||+ .++.+.+++..+|..|+++++.||+++ ++.|++|+|++|+.+ |. ..+++.+
T Consensus 239 ~~~~~~ksi~~~~tf~--~~~~~~~~l~~~l~~la~~~~~rLr~~----~~~~~~l~v~ir~~~---f~----~~t~~~~ 305 (356)
T 4dez_A 239 SEPWVPRSRSHVVTFP--QDLTERREMDSAVRDLALQTLAEIVEQ----GRIVTRVAVTVRTST---FY----TRTKIRK 305 (356)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred ccccccccccccccCC--CcCCCHHHHHHHHHHHHHHHHHHHHHc----CCceeEEEEEEEeCC---Ce----EEEEEEE
Confidence 75 4679999999998 689999999999999999999999974 899999999999753 32 3578888
Q ss_pred CCCcchhhHHhHHHHHHHHHHHHhcccCccccCCCCCCcceeEEEEEecCCeec
Q 006218 319 LRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPV 372 (656)
Q Consensus 319 l~~~t~~I~~da~~L~~~al~ll~~~~~~~l~~~~~~~~~ir~lgVsls~L~~~ 372 (656)
|+.||+ ++..|+++++.+|... +.+.+||+|||++++|.+.
T Consensus 306 l~~pt~----d~~~i~~~a~~ll~~~---------~~~~~vRliGV~ls~l~d~ 346 (356)
T 4dez_A 306 LPAPST----DAGQIVDTALAVLDQF---------ELDRPVRLLGVRLELAMDD 346 (356)
T ss_dssp ------------------------------------------------------
T ss_pred CCcccC----CHHHHHHHHHHHHHhc---------cCCCCEEEEEEEECCCCCC
Confidence 999885 6778888888877643 3456899999999999864
No 9
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=100.00 E-value=3e-54 Score=483.31 Aligned_cols=338 Identities=22% Similarity=0.315 Sum_probs=261.2
Q ss_pred CcHHHHHHhCCCcEEEeccCcCCCCChHHHHHHHHHHHHHHhhc-CCeEEecCceEEEEccchhHHHhccCCCCCc----
Q 006218 1 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTDAAEAMLAETPPESL---- 75 (656)
Q Consensus 1 Mp~~~AkklCP~LivV~vP~~~~k~d~~~Yr~~S~~V~~IL~~~-~~VE~~SIDEafLDlT~~~~~~L~~~~~~~l---- 75 (656)
||+++|+++||+|++| | +||++|+++|++|++||.+| |.||++||||+|||||++...++. .+.+.-
T Consensus 141 Mp~~~Ak~lCP~Lvvv--~-----~d~~~Y~~~S~~v~~il~~ytp~ve~~SiDEafLDvT~~~~~~~~-~~~~~~~~~~ 212 (517)
T 3pzp_A 141 MPGFIAKRLCPQLIIV--P-----PNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQN-WPEDKRRYFI 212 (517)
T ss_dssp SCHHHHHHHCTTCEEE--C-----CCHHHHHHHHHHHHHHHHTTCTTCBCCSSSEEEEETHHHHHHHTS-CCSTTTEEEC
T ss_pred CcHHHHHHhCCceEEE--C-----CCHHHHHHHHHHHHHHHHHcCCcEEEECCceEEEEcccccccccc-cccccccccc
Confidence 9999999999999987 5 89999999999999999998 799999999999999998644321 110000
Q ss_pred ---------------chhhHH--hhhhhcccCccCC--CCCchhhhhhhhh----ccCccchhhhhh-hHHHHHHHHHHH
Q 006218 76 ---------------DEVDEE--ALKSHILGLESKD--GNDSKATVKEWLC----RCDADHRDKLLA-CGVLIVTELRMQ 131 (656)
Q Consensus 76 ---------------~~~~~e--~~~s~l~g~~~~~--g~~~~~~v~~w~~----~~~~~~~d~ll~-~~~~iA~~IR~~ 131 (656)
..+.+. .....++.....+ +... ...+-+ +.+..+...+|+ .+..+|++||++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~lfg~~~~~ia~~IR~~ 289 (517)
T 3pzp_A 213 KMGSSVENDNPGKEVNKLSEHERSISPLLFEESPSDVQPPGD---PFQVNFEEQNNPQILQNSVVFGTSAQEVVKEIRFR 289 (517)
T ss_dssp C-----------------------------------------------------------CCEEECCSSHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccchhhhhcCChHHHHHHHHHHH
Confidence 000000 0000000000000 0000 000000 001111224454 367899999999
Q ss_pred HHHHhCCceeEeccCcHHHHHHHhcCCCCCCeeecCcc--cHHhhcccCCCccccCCchHHHHHHHHhcCCcchhhhhcC
Q 006218 132 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS--SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKF 209 (656)
Q Consensus 132 I~~~tGlt~SiGIA~NKlLAKLAS~~~KP~G~~vl~~~--~v~~fL~~LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~l 209 (656)
|+++||||||||||+||+||||||+++||||+++|.++ ++.+||++|||++|||||++++++|. .+||+|||||+++
T Consensus 290 I~~~tGlt~S~GIA~Nk~LAKlAs~~~KP~G~~vl~~~~~~v~~fL~~LPV~kl~GIG~~t~~~L~-~lGI~TigDL~~~ 368 (517)
T 3pzp_A 290 IEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQ 368 (517)
T ss_dssp HHHHHSCCEEEEEESSHHHHHHHHHTTCSSCEEECCSSHHHHHHHHTTCBGGGSTTCCHHHHHHHH-HTTCCBHHHHHHH
T ss_pred HHHHhCCeEEEEEcCCHHHHHHHhCcCCCCCEEEecCChHHHHHHHhcCChhhhccccHHHHHHHH-HhCCCcHHHHHhh
Confidence 99999999999999999999999999999999999875 78999999999999999999999997 9999999999998
Q ss_pred CHHHHHHhhcccchhhHHHHHhcCCCcccccccCCCcccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 006218 210 SEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 289 (656)
Q Consensus 210 ~~~~L~~~FG~~~G~~L~~~arGiD~~~V~~~~~~KSIs~~~tF~~~~~i~~~eel~~~L~~L~~eL~~RLr~~~~~~~~ 289 (656)
+ ..|.++||...+.++|+.|+|+|+++|.+..++|||+.++||+ .+.+.+++..+|..|+++|+.||++ .++
T Consensus 369 ~-~~L~~~fG~~~~~~l~~~a~Gid~~~v~~~~~~KSi~~e~tf~---~~~~~e~l~~~l~~La~~l~~rLr~----~~~ 440 (517)
T 3pzp_A 369 R-ALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFS---EINKAEEQYSLCQELCSELAQDLQK----ERL 440 (517)
T ss_dssp H-HHHHHHSCHHHHHHHHHHHTTCCCCSCCCCCCCCCEEEEEEEE---EECCHHHHHHHHHHHHHHHHHHHHT----TTC
T ss_pred H-HHHHHHhChHHHHHHHHHHcCCCcccccCCCCCccceeEEEcc---cccCHHHHHHHHHHHHHHHHHHHHH----cCC
Confidence 4 7899999986688899999999999999888899999999997 3789999999999999999999997 599
Q ss_pred eeeEEEEEEeeccCCCCCCCCCcCcceeeCCCcchhhHHhHHHHHHHHHHHHhcccCccccCCCCCCcceeEEEEEecCC
Q 006218 290 IAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKI 369 (656)
Q Consensus 290 ~a~tvtL~ir~~~~~~~~s~~~~~sks~~l~~~t~~I~~da~~L~~~al~ll~~~~~~~l~~~~~~~~~ir~lgVsls~L 369 (656)
.|++|+|++++.+ |.. .+++++++.+|+ ++.+|++.+..+|...+.. ....+.+||+|||++++|
T Consensus 441 ~~~~vtlklk~~~---f~~----~tr~~tl~~~t~----~~~~i~~~a~~Ll~~~~~~----~~~~~~~iRllGV~~s~l 505 (517)
T 3pzp_A 441 KGRTVTIKLKNVN---FEV----KTRASTVSSVVS----TAEEIFAIAKELLKTEIDA----DFPHPLRLRLMGVRISSF 505 (517)
T ss_dssp CBSCEEEEEEETT---SCE----EEECCCCSSCBC----SHHHHHHHHHHHHHHHHHH----HTTSCCCEEEEEEEECCC
T ss_pred ceeEEEEEEEecC---Cce----eeEEEeCCCCCC----CHHHHHHHHHHHHHHHhhh----ccCCCCcEEEEEEEecCC
Confidence 9999999999753 332 478889998885 6777888888888655410 001355799999999999
Q ss_pred eecc
Q 006218 370 VPVL 373 (656)
Q Consensus 370 ~~~~ 373 (656)
.+..
T Consensus 506 ~~~~ 509 (517)
T 3pzp_A 506 PNEE 509 (517)
T ss_dssp CCCC
T ss_pred cChh
Confidence 9764
No 10
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=100.00 E-value=2.5e-54 Score=478.22 Aligned_cols=340 Identities=22% Similarity=0.322 Sum_probs=249.5
Q ss_pred CcHHHHHHhCCCcEEEeccCcCCCCChHHHHHHHHHHHHHHhhc-CCeEEecCceEEEEccchhHHHhccCCC-------
Q 006218 1 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTDAAEAMLAETPP------- 72 (656)
Q Consensus 1 Mp~~~AkklCP~LivV~vP~~~~k~d~~~Yr~~S~~V~~IL~~~-~~VE~~SIDEafLDlT~~~~~~L~~~~~------- 72 (656)
||+++|+++||+|++| | +||+.|+++|++|++||.+| |.||++||||+|||||+.....+. .+.
T Consensus 85 m~~~~A~~lCP~lv~v--~-----~d~~~Y~~~S~~i~~il~~~~p~ve~~SiDEafLDvT~~~~~~~~-~~~~~~~~~~ 156 (459)
T 1t94_A 85 MPGFIAKRLCPQLIIV--P-----PNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQN-WPEDKRRYFI 156 (459)
T ss_dssp CCHHHHHHHCTTCEEE--C-----CCHHHHHHHHHHHHHHHHHHCTTCEECSSSEEEEECHHHHHHHTT-CCGGGSEEEC
T ss_pred CcHHHHHHHCCCeEEE--C-----CCHHHHHHHHHHHHHHHHHhCCceEEeecceEEEECchhHHHhhc-cccccccccc
Confidence 9999999999999988 4 89999999999999999998 799999999999999998643220 000
Q ss_pred ---------CCc---chhhHH--hhhhhcccCcc----CCCCCchhhhhhhhhccCccchhhhh-hhHHHHHHHHHHHHH
Q 006218 73 ---------ESL---DEVDEE--ALKSHILGLES----KDGNDSKATVKEWLCRCDADHRDKLL-ACGVLIVTELRMQVL 133 (656)
Q Consensus 73 ---------~~l---~~~~~e--~~~s~l~g~~~----~~g~~~~~~v~~w~~~~~~~~~d~ll-~~~~~iA~~IR~~I~ 133 (656)
..+ ..+.+. .....+++..+ ..|........+|. .....+.+.+| ..+..+|++||++|+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~fg~~~~~la~~IR~~I~ 235 (459)
T 1t94_A 157 KMGSSVENDNPGKEVNKLSEHERSISPLLFEESPSDVQPPGDPFQVNFEEQN-NPQILQNSVVFGTSAQEVVKEIRFRIE 235 (459)
T ss_dssp CC---CCCCCCCGGGGGGSTTTTTTGGGCC-----------------------CCCCCCCEEECCSSHHHHHHHHHHHHH
T ss_pred ccccccccccccCccccccccccccccccccccccccccccccccccccccc-ccccccchhhccCCHHHHHHHHHHHHH
Confidence 000 000000 00000000000 00000000001111 01111223344 358899999999999
Q ss_pred HHhCCceeEeccCcHHHHHHHhcCCCCCCeeecCc--ccHHhhcccCCCccccCCchHHHHHHHHhcCCcchhhhhcCCH
Q 006218 134 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF--SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSE 211 (656)
Q Consensus 134 ~~tGlt~SiGIA~NKlLAKLAS~~~KP~G~~vl~~--~~v~~fL~~LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~ 211 (656)
++||||||||||+||+|||||++++||||+++|++ +++..||+++||++|||||++++++|. .+||+|++||++++
T Consensus 236 ~~~Glt~S~GIa~nk~LAKlAs~~~KP~g~~vl~~~~~~v~~fL~~lpv~~l~GiG~~~~~~L~-~lGI~T~gdL~~~~- 313 (459)
T 1t94_A 236 QKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQR- 313 (459)
T ss_dssp HHHSCCEEEEEESSHHHHHHHHHHTTTTCEEECCSSHHHHHHHHTTCBGGGCTTSCHHHHHHHH-HTTCCBHHHHHHTH-
T ss_pred HHhCCeEEEeecccHHHHHHHhhccCCCCEEEecCcHHHHHHHHHcCCHHhcCCcCHHHHHHHH-HcCCCcHHHHHhhH-
Confidence 99999999999999999999999999999999987 489999999999999999999999996 99999999999985
Q ss_pred HHHHHhhcccchhhHHHHHhcCCCcccccccCCCcccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCcee
Q 006218 212 DKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 291 (656)
Q Consensus 212 ~~L~~~FG~~~G~~L~~~arGiD~~~V~~~~~~KSIs~~~tF~~~~~i~~~eel~~~L~~L~~eL~~RLr~~~~~~~~~a 291 (656)
..|+++||...|.+||+.|+|+|+++|.+..++|||++++||+ . +.+.+++..+|..|+++|+.||++ .++.|
T Consensus 314 ~~L~~~fG~~~~~~l~~~a~G~d~~~v~~~~~~kSi~~~~tf~--~-~~~~~~l~~~l~~L~~~l~~rL~~----~~~~~ 386 (459)
T 1t94_A 314 ALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFS--E-INKAEEQYSLCQELCSELAQDLQK----ERLKG 386 (459)
T ss_dssp HHHHHHSCHHHHHHHHHHHTTCCCSCC---C--CCEEEEEEEE--E-ECCHHHHHHHHHHHHSSTTCCCC-------CCC
T ss_pred HHHHHHhChHhHHHHHHHHcCCCCcccCCCCCCcceeeeeecC--C-CCCHHHHHHHHHHHHHHHHHHHHH----hCCCc
Confidence 7899999986799999999999999999888899999999997 3 889999999999999999999986 48999
Q ss_pred eEEEEEEeeccCCCCCCCCCcCcceeeCCCcchhhHHhHHHHHHHHHHHHhcccCccccCCCCCCcceeEEEEEecCCee
Q 006218 292 HTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVP 371 (656)
Q Consensus 292 ~tvtL~ir~~~~~~~~s~~~~~sks~~l~~~t~~I~~da~~L~~~al~ll~~~~~~~l~~~~~~~~~ir~lgVsls~L~~ 371 (656)
++|+|++++.+ |. ..+++++++.+|+ ++..|++.+..+|...+.. ....+.+||++||++++|.+
T Consensus 387 ~~vtl~l~~~~---~~----~~srs~~l~~~t~----~~~~i~~~a~~ll~~~~~~----~~~~~~~ir~lGv~~~~l~~ 451 (459)
T 1t94_A 387 RTVTIKLKNVN---FE----VKTRASTVSSVVS----TAEEIFAIAKELLKTEIDA----DFPHPLRLRLMGVRISSFPN 451 (459)
T ss_dssp SCEEEEEEETT---CC----EEEECC-CCCCCC----C--CHHHHHHHHHHHHHSS----STTSCCCEEEEEEEECC---
T ss_pred ceEEEEEEECC---Cc----eeeEEEECCCccC----CHHHHHHHHHHHHHHHHhh----ccCCCCcEEEEEEEEccCcC
Confidence 99999999753 32 2478888988885 5556777777777655410 01235689999999999987
Q ss_pred cc
Q 006218 372 VL 373 (656)
Q Consensus 372 ~~ 373 (656)
..
T Consensus 452 ~~ 453 (459)
T 1t94_A 452 EE 453 (459)
T ss_dssp --
T ss_pred cc
Confidence 53
No 11
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=100.00 E-value=3.4e-52 Score=458.27 Aligned_cols=294 Identities=20% Similarity=0.205 Sum_probs=253.4
Q ss_pred CcHHHHHHhCCC---cEEEeccCcCCCCChHHHHHHHHHHHHHHhhc---CCeEEecCceEEEE--ccchhHHHhccCCC
Q 006218 1 MRGDEAKEVCPQ---IELVQVPVARGKADLSSYRNAGSEVVSILARK---GRCERASIDEVYLD--LTDAAEAMLAETPP 72 (656)
Q Consensus 1 Mp~~~AkklCP~---LivV~vP~~~~k~d~~~Yr~~S~~V~~IL~~~---~~VE~~SIDEafLD--lT~~~~~~L~~~~~ 72 (656)
||+++|+++||+ |+++ | +||+.|+++|++|++||.+| |.||++||||+||| +|+...
T Consensus 112 m~~~~A~~lcP~~~~lvv~--~-----~~~~~Y~~~S~~i~~il~~~~~t~~ve~~SiDEaflD~~vt~~~~-------- 176 (434)
T 2aq4_A 112 MWVSQAEKMLPNGIKLISL--P-----YTFEQFQLKSEAFYSTLKRLNIFNLILPISIDEAVCVRIIPDNIH-------- 176 (434)
T ss_dssp CBHHHHHTTCCTTCCCEEE--C-----CCHHHHHHHHHHHHHHHHHTTCCSEEEEEETTEEEEEEEECC-----------
T ss_pred CcHHHHHHhCCCCCCEEEE--C-----CChHHHHHHHHHHHHHHHhcCCCCCEEEEcCceeEEcCcCccchh--------
Confidence 999999999999 9888 5 89999999999999999995 58999999999999 888541
Q ss_pred CCcchhhHHhhhhhcccCccCCCCCchhhhhhhhhccCccchhhhhhhHHHHHHHHHHHHHHHh-CCceeEeccCcHHHH
Q 006218 73 ESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKET-EFTCSAGIAHNKMLA 151 (656)
Q Consensus 73 ~~l~~~~~e~~~s~l~g~~~~~g~~~~~~v~~w~~~~~~~~~d~ll~~~~~iA~~IR~~I~~~t-Glt~SiGIA~NKlLA 151 (656)
++ +..+..+|++||++|+++| |||||||||+||+||
T Consensus 177 --------------~~-----------------------------~~~~~~la~~Ir~~I~~~~gGlt~svGIa~nk~lA 213 (434)
T 2aq4_A 177 --------------NT-----------------------------NTLNARLCEEIRQEIFQGTNGCTVSIGCSDSLVLA 213 (434)
T ss_dssp ----------------------------------------------CHHHHHHHHHHHHHHHHHSSCCEEEEEESSHHHH
T ss_pred --------------hc-----------------------------CCCHHHHHHHHHHHHHHHcCCCcEEEEecCCHHHH
Confidence 10 0124679999999999999 899999999999999
Q ss_pred HHHhcCCCCCCeeecCcccH-HhhcccCCCccccCCchHHHHHHHHh--cCCcchhhhhcC-CHHHHHHhhcccchhhHH
Q 006218 152 KLASGMNKPAQQTTVPFSSV-KGLLDSLPIKKMKQLGGKLGTSLQNE--LGVTTVGDLLKF-SEDKLQESYGFNTGTWLW 227 (656)
Q Consensus 152 KLAS~~~KP~G~~vl~~~~v-~~fL~~LPI~kL~GIG~kt~~kL~~~--lGI~TigDLa~l-~~~~L~~~FG~~~G~~L~ 227 (656)
|||++++||+|+++|+++++ ..||+++||++|||||++++++|. . +||+|++||+++ +...|+++||...|.++|
T Consensus 214 KlAs~~aKp~G~~~l~~~~~~~~~l~~lpv~~l~GiG~~~~~~L~-~~~~GI~ti~dL~~~~~~~~L~~~fG~~~g~~l~ 292 (434)
T 2aq4_A 214 RLALKMAKPNGYNITFKSNLSEEFWSSFKLDDLPGVGHSTLSRLE-STFDSPHSLNDLRKRYTLDALKASVGSKLGMKIH 292 (434)
T ss_dssp HHHHHHHCSSCEECCCGGGCCHHHHTTCCGGGSTTCCHHHHHHHH-HHTTCCCSHHHHHHHCCHHHHHHHHCSSHHHHHH
T ss_pred HHHHhcCCCCCEEEECChhhHHHHhhcCCcccccCcCHHHHHHHH-HhcCCceEHHHHHhcCCHHHHHHHhCHHHHHHHH
Confidence 99999999999999999887 789999999999999999999997 8 899999999999 999999999965799999
Q ss_pred HHHhcCCCcccc-----cc--cCCCcccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeEEEEEEee
Q 006218 228 NIARGISGEEVQ-----AR--LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASA 300 (656)
Q Consensus 228 ~~arGiD~~~V~-----~~--~~~KSIs~~~tF~~~~~i~~~eel~~~L~~L~~eL~~RLr~~~~~~~~~a~tvtL~ir~ 300 (656)
+.|+|+|+++|. +. .++|||+.++||+ .++.+.+++..+|..|+++|+.||++ .++.|++|+|++++
T Consensus 293 ~~a~G~d~~~v~~~~~~~~~~~~~ksi~~~~tf~--~~~~~~~~l~~~l~~l~~~l~~rLr~----~~~~~~~v~l~l~~ 366 (434)
T 2aq4_A 293 LALQGQDDEESLKILYDPKEVLQRKSLSIDINWG--IRFKNITQVDLFIERGCQYLLEKLNE----INKTTSQITLKLMR 366 (434)
T ss_dssp HHTTTCCCHHHHHHHHCHHHHHSCCCEEEEECSS--CCCSSHHHHHHHHHHHHHHHHHHHHH----TTEEEEEEEEEEEE
T ss_pred HHhcCCCcccccccccCcccCCCCceeEEEEECC--CCCCCHHHHHHHHHHHHHHHHHHHHH----cCCcceEEEEEEEE
Confidence 999999999985 32 4789999999998 58999999999999999999999997 49999999999984
Q ss_pred cc-CCCCCCCC-------CcCcceeeCCCcchhhHHhHHHHHHHHHHHHhcccCccccCCCCCCcceeEEEEEecCCee
Q 006218 301 FK-SSDSDSRK-------KFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVP 371 (656)
Q Consensus 301 ~~-~~~~~s~~-------~~~sks~~l~~~t~~I~~da~~L~~~al~ll~~~~~~~l~~~~~~~~~ir~lgVsls~L~~ 371 (656)
.. +..+...+ ...+++++++.+|+ ++..|++.+..+|...+ ..+.+||+|||++++|.+
T Consensus 367 r~~~~~~~~~ky~g~gd~~~~s~s~~l~~pt~----~~~~i~~~a~~ll~~~~--------~~~~~vR~lgv~~s~l~~ 433 (434)
T 2aq4_A 367 RCKDAPIEPPKYMGMGRCDSFSRSSRLGIPTN----EFGIIATEMKSLYRTLG--------CPPMELRGLALQFNKLVD 433 (434)
T ss_dssp ECTTSCSSCSSTTCCCSEEEEEEEEEEEEEEC----CHHHHHHHHHHHHHHHT--------CCGGGEEEEEEEEEEEEE
T ss_pred ecCCCCcccccccCCCCcccceEEeecCCCcC----CHHHHHHHHHHHHHHhc--------CCCCCEEEEEEEEeCccc
Confidence 32 11111111 13578888888885 67778888888887543 236799999999999875
No 12
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=100.00 E-value=2.7e-38 Score=318.67 Aligned_cols=157 Identities=27% Similarity=0.485 Sum_probs=136.3
Q ss_pred CcHHHHHHhCCCcEEEeccCcCCCCChHHHHHHHHHHHHHHhhc-CCeEEecCceEEEEccchhHHHhccCCCCCcchhh
Q 006218 1 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTDAAEAMLAETPPESLDEVD 79 (656)
Q Consensus 1 Mp~~~AkklCP~LivV~vP~~~~k~d~~~Yr~~S~~V~~IL~~~-~~VE~~SIDEafLDlT~~~~~~L~~~~~~~l~~~~ 79 (656)
||+++|+++||+|+++ | +||+.|+++|++|++++.+| |.||++||||+|||+|+....
T Consensus 64 m~~~~A~~lcP~l~v~--~-----~~~~~Y~~~s~~i~~~l~~~tp~ve~~siDE~~lDvt~~~~~-------------- 122 (221)
T 1im4_A 64 MPIIKAMQIAPSAIYV--P-----MRKPIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEG-------------- 122 (221)
T ss_dssp CBHHHHHHHCTTSEEE--E-----CCHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEECTTTTTT--------------
T ss_pred CcHHHHHHHCCCeEEE--C-----CCHHHHHHHHHHHHHHHHHhCCceEEecCCeEEEEecchhhh--------------
Confidence 9999999999999988 4 89999999999999999998 899999999999999986410
Q ss_pred HHhhhhhcccCccCCCCCchhhhhhhhhccCccchhhhhhhHHHHHHHHHHHHHHHhCCceeEeccCcHHHHHHHhcCCC
Q 006218 80 EEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNK 159 (656)
Q Consensus 80 ~e~~~s~l~g~~~~~g~~~~~~v~~w~~~~~~~~~d~ll~~~~~iA~~IR~~I~~~tGlt~SiGIA~NKlLAKLAS~~~K 159 (656)
+| ..+..+|++||++|++++|||||||||+||++||||++++|
T Consensus 123 -------l~------------------------------~~~~~la~~ir~~i~~~~Gl~~svGia~nk~lAKlas~~~K 165 (221)
T 1im4_A 123 -------NF------------------------------ENGIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSK 165 (221)
T ss_dssp -------CH------------------------------HHHHHHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHHTC
T ss_pred -------cc------------------------------CCHHHHHHHHHHHHHHHhCCeEEEEeCCCHHHHHHHHhhcC
Confidence 12 23467899999999999999999999999999999999999
Q ss_pred CCCeeecCcccHHhhcccCCCccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHH
Q 006218 160 PAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQE 216 (656)
Q Consensus 160 P~G~~vl~~~~v~~fL~~LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~ 216 (656)
|+|+++++++++.+||+++||++|||||++++++|. .+||+|++||+++|+..|++
T Consensus 166 p~g~~~~~~~~~~~~L~~lpv~~l~giG~~~~~~L~-~~Gi~TigdL~~~~~~~L~~ 221 (221)
T 1im4_A 166 PNGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLN-ELGIQKLRDILSKNYNELEK 221 (221)
T ss_dssp SSCEEECCGGGHHHHHHTCBGGGSTTCCHHHHHHHH-HTTCCBTTC-----------
T ss_pred CCCEEEECHHHHHHHHHhCCcccccCCCHHHHHHHH-HcCCCcHHHHHCCCHHHhhC
Confidence 999999999999999999999999999999999997 99999999999999888753
No 13
>1unn_C POL IV, DNA polymerase IV; beta-clamp, translesion, transferase, DNA-directed D polymerase, DNA replication; HET: DNA; 1.9A {Escherichia coli} SCOP: d.240.1.1
Probab=99.04 E-value=2.7e-10 Score=102.70 Aligned_cols=106 Identities=9% Similarity=0.148 Sum_probs=83.6
Q ss_pred CcccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeEEE---EEEeeccCCCCCCCCCcCcceeeCCC
Q 006218 245 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT---LHASAFKSSDSDSRKKFPSKSCPLRY 321 (656)
Q Consensus 245 KSIs~~~tF~~~~~i~~~eel~~~L~~L~~eL~~RLr~~~~~~~~~a~tvt---L~ir~~~~~~~~s~~~~~sks~~l~~ 321 (656)
.-+|.+.||+ .++.+.+++..+|..||++|+.||++. + .|++|+ |++|+.+ |.+ .+++.+ .
T Consensus 5 ~~~g~e~Tf~--~d~~~~~~l~~~l~~l~~~v~~rLr~~----~-~~~tV~k~~vkir~~d---F~~----~trs~t--~ 68 (115)
T 1unn_C 5 HHVGVERTMA--EDIHHWSECEAIIERLYPELERRLAKV----K-PDLLIARQGVKLKFDD---FQQ----TTQEHV--W 68 (115)
T ss_dssp CEEEEEEEEE--EEECCHHHHHHHHHHHHHHHHHHHHHH----C-TTCBCSEEEEEEEETT---SCE----EEEEEE--C
T ss_pred CCCccceECC--CCCCCHHHHHHHHHHHHHHHHHHHHhh----C-CCCeEEEeEEEEEECC---CCe----EEeccc--c
Confidence 3578999998 699999999999999999999999974 7 999999 9999854 432 356665 4
Q ss_pred cchhhHHhHHHHHHHHHHHHhcccCccccCCCCCCcceeEEEEEecCCeeccCcccccccc
Q 006218 322 GTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKY 382 (656)
Q Consensus 322 ~t~~I~~da~~L~~~al~ll~~~~~~~l~~~~~~~~~ir~lgVsls~L~~~~~~~~sq~~l 382 (656)
||+ ++..|++++..+|...+ .+.+||+|||++++|.+.. ..|.+|
T Consensus 69 pt~----~~~~i~~~a~~Ll~~~~---------~~~~vRllGV~ls~L~~~~---~~Ql~L 113 (115)
T 1unn_C 69 PRL----NKADLIATARKTWDERR---------GGRGVRLVGLHVTLLDPQM---ERQLVL 113 (115)
T ss_dssp SBC----CHHHHHHHHHHHHHHHC---------TTCCEEEEEEEEECCCCCC---CCBCCC
T ss_pred CcC----CHHHHHHHHHHHHHhhh---------cCCCEEEEEEEEeCCCCCC---cccCCC
Confidence 664 66778888888876543 4679999999999997652 345554
No 14
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=96.07 E-value=0.0067 Score=48.78 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=44.6
Q ss_pred CccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHhhcccc-hhhHHHHHhc
Q 006218 180 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNT-GTWLWNIARG 232 (656)
Q Consensus 180 I~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~FG~~~-G~~L~~~arG 232 (656)
+.+|||||++...+|.+.+ .++.+|..++.+.|.+..|... ++.+|+..+.
T Consensus 6 L~~IpGIG~kr~~~LL~~F--gs~~~i~~As~eeL~~vig~~~~A~~I~~~l~~ 57 (63)
T 2a1j_A 6 LLKMPGVNAKNCRSLMHHV--KNIAELAALSQDELTSILGNAANAKQLYDFIHT 57 (63)
T ss_dssp HHTSTTCCHHHHHHHHHHC--SSHHHHHTCCHHHHHHHHSCHHHHHHHHHHHHC
T ss_pred HHcCCCCCHHHHHHHHHHc--CCHHHHHHCCHHHHHHHcCchHHHHHHHHHHhc
Confidence 4578999999999997444 4999999999999999999988 9999998874
No 15
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=95.93 E-value=0.0036 Score=51.53 Aligned_cols=52 Identities=25% Similarity=0.297 Sum_probs=44.9
Q ss_pred CccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHhhcc--cchhhHHHHHhc
Q 006218 180 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF--NTGTWLWNIARG 232 (656)
Q Consensus 180 I~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~FG~--~~G~~L~~~arG 232 (656)
|.+|+|||..++.+|. ..||+|+.||+.++...|....|. ..+..|...||.
T Consensus 9 l~~L~Gi~~~~~~kL~-e~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 9 LLNLEGVDRDLAFKLA-ARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARN 62 (70)
T ss_dssp HHSSTTCCHHHHHHHH-TTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHH-HcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH
Confidence 5578899999999997 999999999999999999998883 347778887774
No 16
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=95.55 E-value=0.0057 Score=45.81 Aligned_cols=21 Identities=43% Similarity=0.756 Sum_probs=18.8
Q ss_pred ccCCccccccCChHHHHHHHH
Q 006218 609 EEIDPSVIDELPKEIQDEIQA 629 (656)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~ 629 (656)
+.||+.|+.+||.+||.||-+
T Consensus 14 ~~VD~eVF~~LP~dIQ~Ells 34 (48)
T 2kwv_A 14 EGVDQEVFKQLPADIQEEILS 34 (48)
T ss_dssp TTCCGGGTTTSCHHHHHHHTT
T ss_pred CCCCHHHHHHCcHHHHHHHHh
Confidence 569999999999999999853
No 17
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=94.66 E-value=0.02 Score=48.82 Aligned_cols=51 Identities=24% Similarity=0.314 Sum_probs=44.8
Q ss_pred CccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHhhcccc-hhhHHHHHhc
Q 006218 180 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNT-GTWLWNIARG 232 (656)
Q Consensus 180 I~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~FG~~~-G~~L~~~arG 232 (656)
+.+|||||++...+|. -.+.++.+|..++.+.|.+.+|... |+.+|.+++.
T Consensus 20 L~~IpGIG~kr~~~LL--~~FgSl~~i~~AS~eEL~~vig~~~~A~~I~~~l~~ 71 (84)
T 1z00_B 20 LLKMPGVNAKNCRSLM--HHVKNIAELAALSQDELTSILGNAANAKQLYDFIHT 71 (84)
T ss_dssp HHTCSSCCHHHHHHHH--HHSSCHHHHHHSCHHHHHHHHSCHHHHHHHHHHHTS
T ss_pred HHhCCCCCHHHHHHHH--HHcCCHHHHHHCCHHHHHHHhCchHHHHHHHHHHHh
Confidence 4578899999999996 4567999999999999999999888 8999998873
No 18
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=94.21 E-value=0.024 Score=49.23 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=30.7
Q ss_pred CCccccCCchHHHHHHHHhcCCcchhhhhcCCHHHH
Q 006218 179 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKL 214 (656)
Q Consensus 179 PI~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L 214 (656)
.+++||+||+++++.|. +.||+|+.||+.+....+
T Consensus 5 ~L~~LPNiG~~~e~~L~-~vGI~s~e~L~~~Ga~~a 39 (93)
T 3bqs_A 5 NLSELPNIGKVLEQDLI-KAGIKTPVELKDVGSKEA 39 (93)
T ss_dssp CGGGSTTCCHHHHHHHH-HTTCCSHHHHHHHHHHHH
T ss_pred HhhcCCCCCHHHHHHHH-HcCCCCHHHHHhCCHHHH
Confidence 47899999999999997 999999999998765543
No 19
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=93.80 E-value=0.042 Score=47.70 Aligned_cols=34 Identities=18% Similarity=0.327 Sum_probs=30.4
Q ss_pred CCccccCCchHHHHHHHHhcCCcchhhhhcCCHHH
Q 006218 179 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDK 213 (656)
Q Consensus 179 PI~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~ 213 (656)
.+++||+||+++++.|. +.||+|+.||+.+....
T Consensus 5 ~L~dLPNig~~~e~~L~-~~GI~t~~~Lr~~Ga~~ 38 (93)
T 3mab_A 5 NLSELPNIGKVLEQDLI-KAGIKTPVELKDVGSKE 38 (93)
T ss_dssp CGGGSTTCCHHHHHHHH-HTTCCSHHHHHHHCHHH
T ss_pred HHhhCCCCCHHHHHHHH-HcCCCCHHHHHhCCHHH
Confidence 47899999999999997 99999999999987653
No 20
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=92.82 E-value=0.056 Score=48.59 Aligned_cols=57 Identities=18% Similarity=0.221 Sum_probs=47.5
Q ss_pred cCCCcccc--CCchHHHHHHHHhcCCcchhhhhcCCHHHHHHhhcc--cchhhHHHHHhcCC
Q 006218 177 SLPIKKMK--QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF--NTGTWLWNIARGIS 234 (656)
Q Consensus 177 ~LPI~kL~--GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~FG~--~~G~~L~~~arGiD 234 (656)
++||.+|+ |||+.+..+|. ..|++|+.+|+..++..|.+.-|. ..+..+...|+-.-
T Consensus 22 ~~~I~~L~~~GIg~~~i~kL~-eAG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~kl~ 82 (114)
T 1b22_A 22 PQPISRLEQCGINANDVKKLE-EAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLV 82 (114)
T ss_dssp CCCHHHHHHTTCSHHHHHHHH-TTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHHHS
T ss_pred CccHHHHHhcCCCHHHHHHHH-HcCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHHHHc
Confidence 35788888 99999999997 999999999999999999877553 45777888877543
No 21
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=91.39 E-value=0.16 Score=42.07 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=42.7
Q ss_pred ccCCCccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHh--hcccchhhHHHHH
Q 006218 176 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNIA 230 (656)
Q Consensus 176 ~~LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~--FG~~~G~~L~~~a 230 (656)
..+||.++ ++..+...-|. +.||+|++||...+.+.|.+. ||.+....+...+
T Consensus 7 l~~~Ie~L-~LS~Ra~NcLk-ragI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~~L 61 (73)
T 1z3e_B 7 LEMTIEEL-DLSVRSYNCLK-RAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKL 61 (73)
T ss_dssp HTCBGGGS-CCBHHHHHHHH-HTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred hcCcHHHh-CCCHHHHHHHH-HcCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHHHHH
Confidence 34788888 79999999996 999999999999999998876 7765554444443
No 22
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=91.14 E-value=0.12 Score=42.77 Aligned_cols=50 Identities=12% Similarity=0.146 Sum_probs=38.8
Q ss_pred CCCccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHh--hcccchhhHHHH
Q 006218 178 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNI 229 (656)
Q Consensus 178 LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~--FG~~~G~~L~~~ 229 (656)
..+..+||||++++.+|.+.+| ++.+|...+.+.|.+. +|.+.+..++..
T Consensus 24 ~~L~~I~gIG~~~A~~Ll~~fg--sl~~l~~a~~eeL~~i~GIG~~~a~~I~~~ 75 (78)
T 1kft_A 24 SSLETIEGVGPKRRQMLLKYMG--GLQGLRNASVEEIAKVPGISQGLAEKIFWS 75 (78)
T ss_dssp CGGGGCTTCSSSHHHHHHHHHS--CHHHHHHCCHHHHTTSSSTTSHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHcC--CHHHHHHCCHHHHHHCCCCCHHHHHHHHHH
Confidence 3466899999999999986666 7889999999999887 665555555543
No 23
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=91.05 E-value=0.17 Score=43.08 Aligned_cols=50 Identities=16% Similarity=0.318 Sum_probs=40.6
Q ss_pred CccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHh--hcccchhhHHHHHh
Q 006218 180 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNIAR 231 (656)
Q Consensus 180 I~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~--FG~~~G~~L~~~ar 231 (656)
+..+||||++++.+|.+.+| ++.+|...+.+.|.+. +|.+.+..++....
T Consensus 34 L~~IpgIG~~~A~~Ll~~fg--s~~~l~~as~~eL~~i~GIG~~~a~~I~~~l~ 85 (91)
T 2a1j_B 34 LTTVKSVNKTDSQTLLTTFG--SLEQLIAASREDLALCPGLGPQKARRLFDVLH 85 (91)
T ss_dssp HTTSTTCCHHHHHHHHHHHS--SHHHHHSCCHHHHHTSSSCCSHHHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHCC--CHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHh
Confidence 44689999999999986666 7899999999999888 77766777776654
No 24
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=90.45 E-value=0.2 Score=42.35 Aligned_cols=51 Identities=16% Similarity=0.307 Sum_probs=41.2
Q ss_pred CccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHh--hcccchhhHHHHHhc
Q 006218 180 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNIARG 232 (656)
Q Consensus 180 I~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~--FG~~~G~~L~~~arG 232 (656)
+..+||||++++.+|.+.+| ++.+|...+.+.|.+. +|.+.+..++.....
T Consensus 21 L~~IpgIG~~~A~~Ll~~fg--sl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~~ 73 (89)
T 1z00_A 21 LTTVKSVNKTDSQTLLTTFG--SLEQLIAASREDLALCPGLGPQKARRLFDVLHE 73 (89)
T ss_dssp HTTSSSCCHHHHHHHHHHTC--BHHHHHHCCHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred HHcCCCCCHHHHHHHHHHCC--CHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 45689999999999986665 7899999999999888 777667777766653
No 25
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=90.13 E-value=0.15 Score=42.95 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=42.9
Q ss_pred hhcccCCCccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHh--hcccchhhHHH
Q 006218 173 GLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWN 228 (656)
Q Consensus 173 ~fL~~LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~--FG~~~G~~L~~ 228 (656)
.-+..+||.++ ++..+...-|. +.||+|++||...+.+.|.+. ||.+....+..
T Consensus 11 ~~~l~~~Ie~L-~LS~Ra~NcLk-~agI~Tv~dL~~~se~dLlki~n~G~kSl~EI~~ 66 (79)
T 3gfk_B 11 EKVLEMTIEEL-DLSVRSYNCLK-RAGINTVQELANKTEEDMMKVRNLGRKSLEEVKA 66 (79)
T ss_dssp CCGGGCBGGGS-CCBHHHHHHHH-HTTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHHH
T ss_pred HHHhcCcHHHh-CCCHHHHHHHH-HhCCCCHHHHHhCCHHHHHHcCCCCHhHHHHHHH
Confidence 34557888888 89999999996 999999999999999988776 66654444443
No 26
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=89.09 E-value=0.074 Score=53.81 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=0.0
Q ss_pred CCCccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHh--hcccchhhHHHHH
Q 006218 178 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNIA 230 (656)
Q Consensus 178 LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~--FG~~~G~~L~~~a 230 (656)
..+.+|+|||++++.+|. ..|+.++.+|...+...|.+. ||.++++.++..+
T Consensus 15 ~~L~~IpGIGpk~a~~Ll-~~gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~l 68 (241)
T 1vq8_Y 15 TELTDISGVGPSKAESLR-EAGFESVEDVRGADQSALADVSGIGNALAARIKADV 68 (241)
T ss_dssp -------------------------------------------------------
T ss_pred hHHhcCCCCCHHHHHHHH-HcCCCCHHHHHhCCHHHHHhccCCCHHHHHHHHHHH
Confidence 467789999999999997 559999999999999999988 7777777765544
No 27
>2khu_A Immunoglobulin G-binding protein G, DNA polymerase IOTA; UBM, ubiquitin-binding domain, translesion synthesis, TLS, ubiquitin-binding protein; NMR {Streptococcus SP} PDB: 2khw_A 2l0f_B*
Probab=89.09 E-value=0.14 Score=44.31 Aligned_cols=29 Identities=41% Similarity=0.793 Sum_probs=21.6
Q ss_pred cCCccccccCChHHHHHH-HHhhCCCCCCC
Q 006218 610 EIDPSVIDELPKEIQDEI-QAWLRPSKRPH 638 (656)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 638 (656)
+|||.|+.|||+|+|+|+ ..|=|..--++
T Consensus 67 ~VDP~VFyeLP~eVQ~ELla~Wr~~~~~~~ 96 (108)
T 2khu_A 67 DIDPQVFYELPEAVQKELLAEWKRTGSDFH 96 (108)
T ss_dssp TCCHHHHTTSCHHHHHHHHHHHHHHC----
T ss_pred CCCHHHHHHccHHHHHHHHHHHHHhCCCCC
Confidence 899999999999999996 45866544433
No 28
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=88.51 E-value=0.42 Score=40.80 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=42.1
Q ss_pred ccCCCccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHh--hcccchhhHHHHH
Q 006218 176 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNIA 230 (656)
Q Consensus 176 ~~LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~--FG~~~G~~L~~~a 230 (656)
-..||.++ ++..+...-|. +.||+|++||...+.+.|.+. ||.+....+...+
T Consensus 10 l~~~I~~L-~LSvRa~NcLk-ragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L 64 (86)
T 3k4g_A 10 LLRPVDDL-ELTVRSANCLX-AEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXDVL 64 (86)
T ss_dssp GGSBGGGG-CCCHHHHHHHH-HTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HhCcHHHh-CCCHHHHHHHH-HcCCCcHHHHHhCCHHHHhhccccCcccHHHHHHHH
Confidence 35688888 78999999996 999999999999999988775 7765555454443
No 29
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=87.11 E-value=0.36 Score=48.15 Aligned_cols=50 Identities=12% Similarity=0.219 Sum_probs=43.5
Q ss_pred CCCccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHhhcc-cchhhHHHH
Q 006218 178 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF-NTGTWLWNI 229 (656)
Q Consensus 178 LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~FG~-~~G~~L~~~ 229 (656)
.++..|||||++++++|.+.+| ++..|...+.+.|.+.+|. +.++.++..
T Consensus 168 s~LdgIpGIG~k~ak~Ll~~Fg--Sl~~i~~As~EeL~~VIG~~~~A~~I~~~ 218 (220)
T 2nrt_A 168 SVLDNVPGIGPIRKKKLIEHFG--SLENIRSASLEEIARVIGSTEIARRVLDI 218 (220)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHC--SHHHHHTSCHHHHHHHHTCHHHHHHHHHH
T ss_pred ccccCCCCcCHHHHHHHHHHcC--CHHHHHhCCHHHHHHHhChHHHHHHHHHH
Confidence 4678899999999999987777 8999999999999999998 878877764
No 30
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=85.07 E-value=0.53 Score=40.29 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=27.9
Q ss_pred cccCCCccccCCchHHHHHHHHhcCCcchhhhhc
Q 006218 175 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLK 208 (656)
Q Consensus 175 L~~LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~ 208 (656)
|..-+|+++||||+.++.+|. .-||.+..+|..
T Consensus 15 mgeK~V~evpGIG~~~~~~L~-~~Gf~kAy~lLG 47 (89)
T 1ci4_A 15 MGEKPVGSLAGIGEVLGKKLE-ERGFDKAYVVLG 47 (89)
T ss_dssp CTTCCGGGSTTCCHHHHHHHH-HTTCCSHHHHHH
T ss_pred CCCCCcccCCCcCHHHHHHHH-HcCccHHHHHHH
Confidence 334589999999999999997 899999877764
No 31
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=83.98 E-value=0.39 Score=55.03 Aligned_cols=52 Identities=23% Similarity=0.376 Sum_probs=46.2
Q ss_pred CCCccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHhhcccchhhHHHHHh
Q 006218 178 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 231 (656)
Q Consensus 178 LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~FG~~~G~~L~~~ar 231 (656)
+|+..|||||+..+++|. ..||+|+.||+ ++++.|.+.+|.+.|..++..+.
T Consensus 657 ~~L~qlp~i~~~rar~L~-~~g~~s~~~l~-~~~~~l~~~l~~~~~~~i~~~~~ 708 (715)
T 2va8_A 657 LELVQISGVGRKRARLLY-NNGIKELGDVV-MNPDKVKNLLGQKLGEKVVQEAA 708 (715)
T ss_dssp HHHHTSTTCCHHHHHHHH-HTTCCSHHHHH-HCHHHHHHHHCHHHHHHHHHHHH
T ss_pred cchhhCCCCCHHHHHHHH-HcCCCCHHHHh-CCHHHHHHHhChhHHHHHHHHHH
Confidence 577899999999999997 99999999999 99999999998777888877554
No 32
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=83.43 E-value=2.2 Score=36.00 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=38.6
Q ss_pred cCCCccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHhhcc
Q 006218 177 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 220 (656)
Q Consensus 177 ~LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~FG~ 220 (656)
.+.++..||+-.-+.++|+ +.||+|+.|+...++..|.+..|.
T Consensus 3 ~l~~~~~p~Lse~~~~~L~-~~~I~Tv~Dfl~~d~~eL~~~~~l 45 (83)
T 2kz3_A 3 VLRVGLCPGLTEEMIQLLR-SHRIKTVVDLVSADLEEVAQKCGL 45 (83)
T ss_dssp CCCTTSSTTCCHHHHHHHH-HTTCCCHHHHTTSCHHHHHHHHTC
T ss_pred ccccccCCCCCHHHHHHHH-HCCCCCHHHHHhCCHHHHHHHhCC
Confidence 4556667999999999997 999999999999999999999996
No 33
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=83.23 E-value=0.58 Score=40.91 Aligned_cols=52 Identities=19% Similarity=0.304 Sum_probs=42.6
Q ss_pred cCCCccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHh--hcccchhhHHHHH
Q 006218 177 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNIA 230 (656)
Q Consensus 177 ~LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~--FG~~~G~~L~~~a 230 (656)
.+||.++ ++..+...-|. +.||+|++||...+.+.|.+. ||.+....+...+
T Consensus 23 ~~~Ie~L-~LSvRs~NcLk-ragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L 76 (98)
T 1coo_A 23 LRPVDDL-ELTVRSANCLK-AEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVL 76 (98)
T ss_dssp HSBGGGG-TCCTTTHHHHH-TTTCCBHHHHHTSCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred cCcHHHh-CCCHHHHHHHH-HcCCCcHHHHHhCCHHHHHhcCCCCHHHHHHHHHHH
Confidence 3788888 78889999996 999999999999999998776 8876555555544
No 34
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=83.13 E-value=0.99 Score=47.57 Aligned_cols=54 Identities=24% Similarity=0.266 Sum_probs=43.9
Q ss_pred cCCCccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHhhccc--chhhHHHHHh
Q 006218 177 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFN--TGTWLWNIAR 231 (656)
Q Consensus 177 ~LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~FG~~--~G~~L~~~ar 231 (656)
..+|.+|+|||..+.++|. ..||+|+.+++..++..|.+.-|.. ....+...++
T Consensus 34 ~~~l~~l~Gi~~~~~~kL~-~ag~~t~~~~~~~~~~~L~~~~~~s~~~~~~~l~~~~ 89 (349)
T 1pzn_A 34 IRSIEDLPGVGPATAEKLR-EAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAAR 89 (349)
T ss_dssp -CCSSCCTTCCHHHHHHHH-TTTCCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred cccHHHcCCCCHHHHHHHH-HcCCCcHHHHHhCCHHHHHhhcCCCHHHHHHHHHHHh
Confidence 3578899999999999997 9999999999999999999888852 2444555544
No 35
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=81.21 E-value=1.4 Score=45.88 Aligned_cols=61 Identities=15% Similarity=0.267 Sum_probs=50.7
Q ss_pred CCCccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHhhccc--chhhHHHHHhcCCCcccc
Q 006218 178 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFN--TGTWLWNIARGISGEEVQ 239 (656)
Q Consensus 178 LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~FG~~--~G~~L~~~arGiD~~~V~ 239 (656)
.|+..|||||+..+++|. ..||.|+.||..++.+.+...+|.. .|..+++.++....-.|.
T Consensus 157 ~pL~Qlp~i~~~~~~~l~-~~~i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~~P~l~v~ 219 (328)
T 3im1_A 157 NPLRQIPHFNNKILEKCK-EINVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNVELT 219 (328)
T ss_dssp CGGGGSTTCCHHHHHHHH-HTTCCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEE
T ss_pred CceeCCCCCCHHHHHHHH-hCCCCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHHhCCCEEEE
Confidence 578899999999999996 8999999999999999998887642 467788888876655543
No 36
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=79.89 E-value=1.1 Score=35.84 Aligned_cols=50 Identities=12% Similarity=0.201 Sum_probs=38.0
Q ss_pred CccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHh--hcccchhhHHHHHh
Q 006218 180 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNIAR 231 (656)
Q Consensus 180 I~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~--FG~~~G~~L~~~ar 231 (656)
+..++|||.+++.+|.+.+ .++.+|...+.+.|.+. +|...+..++....
T Consensus 16 L~~i~giG~~~a~~Ll~~f--gs~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~ 67 (75)
T 1x2i_A 16 VEGLPHVSATLARRLLKHF--GSVERVFTASVAELMKVEGIGEKIAKEIRRVIT 67 (75)
T ss_dssp HTTSTTCCHHHHHHHHHHH--CSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHc--CCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHHh
Confidence 4678999999999998555 46888998999999877 66655666665543
No 37
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=79.78 E-value=1.2 Score=45.76 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=43.7
Q ss_pred CCCccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHhhccc--chhhHHHHHhcC
Q 006218 178 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFN--TGTWLWNIARGI 233 (656)
Q Consensus 178 LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~FG~~--~G~~L~~~arGi 233 (656)
.+|.+|+||++.++.+|+ ..||+|+.||+..++..|.+.-|.. .+..+...|+-.
T Consensus 3 ~~~~~l~gi~~~~~~kL~-~~gi~t~~~~~~~~~~~L~~~~gis~~~a~~~i~~a~~~ 59 (322)
T 2i1q_A 3 DNLTDLPGVGPSTAEKLV-EAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDL 59 (322)
T ss_dssp --CTTSTTCCHHHHHHHH-HHTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHHHH
T ss_pred ccHhhcCCCCHHHHHHHH-HcCCCcHHHHHhCCHHHHHHhhCcCHHHHHHHHHHHHHh
Confidence 367889999999999997 9999999999999999998877752 245566666643
No 38
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=79.70 E-value=0.61 Score=53.42 Aligned_cols=52 Identities=13% Similarity=0.278 Sum_probs=47.6
Q ss_pred CCCccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHhhcccchhhHHHHHh
Q 006218 178 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 231 (656)
Q Consensus 178 LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~FG~~~G~~L~~~ar 231 (656)
+|+..|||||+..+++|. ..||+|+.||+.++ ..|.+.+|.+.|..++..+.
T Consensus 632 ~~L~qlp~v~~~~ar~l~-~~g~~s~~~l~~~~-~~l~~ll~~~~~~~i~~~~~ 683 (702)
T 2p6r_A 632 LELVRIRHIGRVRARKLY-NAGIRNAEDIVRHR-EKVASLIGRGIAERVVEGIS 683 (702)
T ss_dssp HHHHTSTTCCHHHHHHHH-TTTCCSHHHHHHTH-HHHHHHHCHHHHHHHHHHHH
T ss_pred HhhhcCCCCCHHHHHHHH-HcCCCCHHHHHhhh-HHHHHHhChhHHHHHHHhcC
Confidence 577789999999999997 99999999999999 99999998778999998888
No 39
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=77.27 E-value=2 Score=45.09 Aligned_cols=59 Identities=10% Similarity=0.112 Sum_probs=47.3
Q ss_pred CCCccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHhhccc--chhhHHHHHhcCCCcc
Q 006218 178 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFN--TGTWLWNIARGISGEE 237 (656)
Q Consensus 178 LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~FG~~--~G~~L~~~arGiD~~~ 237 (656)
.|+..|||||+..+++|. ..||.|+.||..++.+.+...+|.. .+..+++.++-+..-.
T Consensus 161 ~pL~Qlp~i~~~~~~~l~-~~~i~s~~~l~~~~~~e~~~ll~l~~~~~~~i~~~~~~~P~l~ 221 (339)
T 2q0z_X 161 SYLKQLPHFTSEHIKRCT-DKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIE 221 (339)
T ss_dssp CGGGGSTTCCHHHHHHHH-HTTCCSHHHHHHSCHHHHHHHHCCCHHHHHHHHHHHTTSCCEE
T ss_pred CceecCCCCCHHHHHHHH-hcCCCCHHHHHhCCHHHHHHHHCCCHHHHHHHHHHHHhCCcEE
Confidence 588899999999999996 9999999999999999988888732 2456666666554433
No 40
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=77.11 E-value=1.7 Score=49.81 Aligned_cols=51 Identities=14% Similarity=0.233 Sum_probs=42.5
Q ss_pred CCCccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHhhcccchhhHHHHHh
Q 006218 178 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 231 (656)
Q Consensus 178 LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~FG~~~G~~L~~~ar 231 (656)
+|+..|||||+..+++|. ..||+|+.||+.++++.|... ...|..++..+.
T Consensus 646 ~~L~qlp~v~~~rar~L~-~~G~~s~~dl~~~~~~~l~~~--~~~~~~i~~~~~ 696 (720)
T 2zj8_A 646 IPLMQLPLVGRRRARALY-NSGFRSIEDISQARPEELLKI--EGIGVKTVEAIF 696 (720)
T ss_dssp GGGTTSTTCCHHHHHHHH-TTTCCSHHHHHTCCHHHHHTS--TTCCHHHHHHHH
T ss_pred hhhhhCCCCCHHHHHHHH-HcCCCCHHHHHhCCHHHHHHh--HhHHHHHHHHHH
Confidence 688899999999999997 999999999999999999877 234555555543
No 41
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=74.44 E-value=1.2 Score=43.29 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=43.6
Q ss_pred CccccCCchHHHHHHHHhcCCcchh-hhhcCCHHHHHHh--hcccchhhHHHHHhcC
Q 006218 180 IKKMKQLGGKLGTSLQNELGVTTVG-DLLKFSEDKLQES--YGFNTGTWLWNIARGI 233 (656)
Q Consensus 180 I~kL~GIG~kt~~kL~~~lGI~Tig-DLa~l~~~~L~~~--FG~~~G~~L~~~arGi 233 (656)
+..++|||++++.+|...+|-.++- .+..-+.+.|.+. .|.+++++++..+++.
T Consensus 74 L~~v~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~~lk~k 130 (191)
T 1ixr_A 74 LLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALELKGK 130 (191)
T ss_dssp HHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHHTTT
T ss_pred HhcCCCcCHHHHHHHHHhCChHHHHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 3459999999999988777876654 4777889999988 7777889998888764
No 42
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=74.22 E-value=1.4 Score=51.52 Aligned_cols=31 Identities=35% Similarity=0.559 Sum_probs=28.5
Q ss_pred CCCccccCCchHHHHHHHHhcCCcchhhhhcC
Q 006218 178 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKF 209 (656)
Q Consensus 178 LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~l 209 (656)
.||..++|||++++++|. ++||+|++||+..
T Consensus 115 ~~~~~l~gvg~~~~~~l~-~lgi~~~~dll~~ 145 (780)
T 1gm5_A 115 TDIQYAKGVGPNRKKKLK-KLGIETLRDLLEF 145 (780)
T ss_dssp CCSSSSSSCCHHHHHHHH-TTTCCSSGGGTSC
T ss_pred CCchhcCCCCHHHHHHHH-HCCCCcHHHHHhh
Confidence 489999999999999997 9999999999863
No 43
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=70.58 E-value=1.7 Score=42.70 Aligned_cols=54 Identities=15% Similarity=0.111 Sum_probs=43.5
Q ss_pred CccccCCchHHHHHHHHhcCCcchh-hhhcCCHHHHHHh--hcccchhhHHHHHhcC
Q 006218 180 IKKMKQLGGKLGTSLQNELGVTTVG-DLLKFSEDKLQES--YGFNTGTWLWNIARGI 233 (656)
Q Consensus 180 I~kL~GIG~kt~~kL~~~lGI~Tig-DLa~l~~~~L~~~--FG~~~G~~L~~~arGi 233 (656)
+..++|||++++.+|...+|..++- .+...+.+.|.+. .|.+++++++..+++.
T Consensus 75 L~~V~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~elk~k 131 (203)
T 1cuk_A 75 LIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDR 131 (203)
T ss_dssp HHHSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHHHH
T ss_pred HhcCCCcCHHHHHHHHhhCChHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHHh
Confidence 3458999999999988678876654 5778899999998 7777899998888754
No 44
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=69.51 E-value=3.2 Score=47.68 Aligned_cols=51 Identities=24% Similarity=0.223 Sum_probs=41.1
Q ss_pred CCccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHh--hcccchhhHHHH
Q 006218 179 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNI 229 (656)
Q Consensus 179 PI~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~--FG~~~G~~L~~~ 229 (656)
..-+|.|+|+++..+|.+..+|.++.||..+..+.|... ||.+.+..|+..
T Consensus 442 ~aldI~GLG~k~i~~L~~~g~I~~~~DL~~L~~e~L~~l~g~G~Ksa~nLl~a 494 (667)
T 1dgs_A 442 KAMDIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLLGLERMGEKSAQNLLRQ 494 (667)
T ss_dssp TSSCCTTCCHHHHHHHHHTTSCSSGGGGGGGCCHHHHTTSSCCSTTHHHHHHH
T ss_pred cccCcCcCCHHHHHHHHHcCCCCCHHHHHhcCHHHHhcccccchhhHHHHHHH
Confidence 445799999999999986778999999999987777764 777666666543
No 45
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=69.01 E-value=3.1 Score=40.75 Aligned_cols=50 Identities=10% Similarity=0.248 Sum_probs=40.5
Q ss_pred CccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHh--hcccchhhHHHHHh
Q 006218 180 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNIAR 231 (656)
Q Consensus 180 I~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~--FG~~~G~~L~~~ar 231 (656)
+..+||||++++.+|.+.+| ++.+|...+.+.|... +|.+.+..++...+
T Consensus 164 L~~i~gVg~~~a~~Ll~~fg--s~~~l~~a~~e~L~~v~GiG~~~a~~i~~~~~ 215 (219)
T 2bgw_A 164 LQSFPGIGRRTAERILERFG--SLERFFTASKAEISKVEGIGEKRAEEIKKILM 215 (219)
T ss_dssp HHTSTTCCHHHHHHHHHHHS--SHHHHTTCCHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHcC--CHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHh
Confidence 45799999999999986665 5889999999999887 67767777777654
No 46
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=68.85 E-value=2.2 Score=45.02 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=25.3
Q ss_pred CccccCCchHHHHHHHHhcCCcchhhhhcC
Q 006218 180 IKKMKQLGGKLGTSLQNELGVTTVGDLLKF 209 (656)
Q Consensus 180 I~kL~GIG~kt~~kL~~~lGI~TigDLa~l 209 (656)
+.+|||||++++.+|. ..||+|+.||...
T Consensus 100 l~~V~GiGpk~a~~l~-~~Gi~tledL~~a 128 (335)
T 2fmp_A 100 LTRVSGIGPSAARKFV-DEGIKTLEDLRKN 128 (335)
T ss_dssp HTTSTTCCHHHHHHHH-HTTCCSHHHHHTC
T ss_pred HhCCCCCCHHHHHHHH-HcCCCCHHHHHHh
Confidence 3479999999999998 5599999999873
No 47
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=68.30 E-value=1 Score=46.59 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=0.0
Q ss_pred CCCccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHhhcc
Q 006218 178 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 220 (656)
Q Consensus 178 LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~FG~ 220 (656)
.||.+|+||+..+.++|. ..||+|+.+++..++..|.+.-|.
T Consensus 12 ~~~~~l~g~~~~~~~~l~-~~g~~t~~~~~~~~~~~l~~~~g~ 53 (324)
T 2z43_A 12 KTINDLPGISQTVINKLI-EAGYSSLETLAVASPQDLSVAAGI 53 (324)
T ss_dssp -------------------------------------------
T ss_pred ccHHHcCCCCHHHHHHHH-HcCCCcHHHHHcCCHHHHHHhhCC
Confidence 488899999999999997 999999999999998888877664
No 48
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=66.56 E-value=2.8 Score=44.19 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=24.4
Q ss_pred ccccCCchHHHHHHHHhcCCcchhhhhc
Q 006218 181 KKMKQLGGKLGTSLQNELGVTTVGDLLK 208 (656)
Q Consensus 181 ~kL~GIG~kt~~kL~~~lGI~TigDLa~ 208 (656)
.+|||||++++.+|. ..||+|+.||..
T Consensus 99 ~~v~GiG~k~a~~l~-~~Gi~tledL~~ 125 (335)
T 2bcq_A 99 SNIWGAGTKTAQMWY-QQGFRSLEDIRS 125 (335)
T ss_dssp HTSTTCCHHHHHHHH-HTTCCSHHHHHH
T ss_pred hcCCCcCHHHHHHHH-HcCCCCHHHHHH
Confidence 489999999999998 569999999976
No 49
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=66.24 E-value=3.9 Score=43.99 Aligned_cols=57 Identities=25% Similarity=0.218 Sum_probs=45.3
Q ss_pred hcccCCCccccC--CchHHHHHHHHhcCCcchhhhhcCCHHHHHHhhcccc--hhhHHHHHh
Q 006218 174 LLDSLPIKKMKQ--LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNT--GTWLWNIAR 231 (656)
Q Consensus 174 fL~~LPI~kL~G--IG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~FG~~~--G~~L~~~ar 231 (656)
.-..+||.+|.+ |+..+.++|. ..||+|+.+|+..++..|.+..|... ...+...++
T Consensus 77 ~~~~~~~~~l~~~gi~~~~~~~L~-~ag~~tv~~~~~~~~~~L~~~~gis~~~~~~i~~~a~ 137 (400)
T 3lda_A 77 LGSFVPIEKLQVNGITMADVKKLR-ESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAA 137 (400)
T ss_dssp -CCSCBGGGGCCTTCCHHHHHHHH-HTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred ccCccCHHHHHhCCCCHHHHHHHH-HcCCCcHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 345578999986 7799999997 99999999999999999999988632 344555544
No 50
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=66.15 E-value=4 Score=46.96 Aligned_cols=53 Identities=25% Similarity=0.238 Sum_probs=42.2
Q ss_pred cCCCccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHh--hcccchhhHHHH
Q 006218 177 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNI 229 (656)
Q Consensus 177 ~LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~--FG~~~G~~L~~~ 229 (656)
+-..-+|+|+|.++..+|.+..+|+++.||..+..+.|... ||.+.+..|++.
T Consensus 445 sr~aldI~GLG~k~i~~L~~~g~I~~~aDL~~L~~~~L~~l~gfG~Ksa~nLl~a 499 (671)
T 2owo_A 445 SRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNA 499 (671)
T ss_dssp STTTTCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHHHH
T ss_pred hhhhcCCCCCCHHHHHHHHHcCCCCCHHHHHhhCHHHhhcccccchhHHHHHHHH
Confidence 34556899999999999986667899999999998888774 777666666543
No 51
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=63.64 E-value=3.5 Score=43.89 Aligned_cols=28 Identities=18% Similarity=0.270 Sum_probs=24.6
Q ss_pred CccccCCchHHHHHHHHhcCCcchhhhhc
Q 006218 180 IKKMKQLGGKLGTSLQNELGVTTVGDLLK 208 (656)
Q Consensus 180 I~kL~GIG~kt~~kL~~~lGI~TigDLa~ 208 (656)
+.+|||||++++.+|. ..||+|+.||..
T Consensus 104 l~~I~GvG~kta~~l~-~~Gi~tledL~~ 131 (360)
T 2ihm_A 104 FTQVFGVGVKTANRWY-QEGLRTLDELRE 131 (360)
T ss_dssp HHTSTTCCHHHHHHHH-HTTCCSHHHHHT
T ss_pred HhCCCCCCHHHHHHHH-HcCCCCHHHHHh
Confidence 3589999999999998 559999999983
No 52
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=63.09 E-value=1.5 Score=43.79 Aligned_cols=52 Identities=13% Similarity=0.162 Sum_probs=0.0
Q ss_pred cCCCccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHh-hcccchhhHHHHH
Q 006218 177 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES-YGFNTGTWLWNIA 230 (656)
Q Consensus 177 ~LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~-FG~~~G~~L~~~a 230 (656)
..++..|||||++++++|.+.+ .++..|.+.+.+.|.+. +|.+.++.++...
T Consensus 172 ~s~L~~IpGIG~k~ak~Ll~~F--GSl~~i~~As~eeL~~VGIG~~~A~~I~~~f 224 (226)
T 3c65_A 172 HSVLDDIPGVGEKRKKALLNYF--GSVKKMKEATVEELQRANIPRAVAEKIYEKL 224 (226)
T ss_dssp -------------------------------------------------------
T ss_pred cccccccCCCCHHHHHHHHHHh--CCHHHHHhCCHHHHHHcCCCHHHHHHHHHHh
Confidence 4567889999999999997444 56888888899999988 5555666666543
No 53
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=62.54 E-value=3.6 Score=44.10 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=24.8
Q ss_pred CccccCCchHHHHHHHHhcCCcchhhhhc
Q 006218 180 IKKMKQLGGKLGTSLQNELGVTTVGDLLK 208 (656)
Q Consensus 180 I~kL~GIG~kt~~kL~~~lGI~TigDLa~ 208 (656)
+.+|||||++++.+|. ..||+|+.||..
T Consensus 123 l~~I~GvGpk~a~~ly-~~Gi~tledL~~ 150 (381)
T 1jms_A 123 FTSVFGVGLKTAEKWF-RMGFRTLSKIQS 150 (381)
T ss_dssp HHTSTTCCHHHHHHHH-HTTCCSHHHHHH
T ss_pred HHccCCCCHHHHHHHH-HcCCCcHHHHHh
Confidence 4489999999999998 559999999985
No 54
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=62.10 E-value=5.1 Score=32.45 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=23.3
Q ss_pred ccccCCchHHHHHHHHhcCCcchhhhhcC
Q 006218 181 KKMKQLGGKLGTSLQNELGVTTVGDLLKF 209 (656)
Q Consensus 181 ~kL~GIG~kt~~kL~~~lGI~TigDLa~l 209 (656)
..+||||++++.++.+..++.++.||..+
T Consensus 30 ~~ipGIG~~~A~~Il~~r~~~s~~eL~~v 58 (75)
T 2duy_A 30 MALPGIGPVLARRIVEGRPYARVEDLLKV 58 (75)
T ss_dssp TTSTTCCHHHHHHHHHTCCCSSGGGGGGS
T ss_pred HhCCCCCHHHHHHHHHHcccCCHHHHHhC
Confidence 45799999999999866677788887754
No 55
>3ai4_A Yeast enhanced green fluorescent protein, DNA POL IOTA; UBM, ubiquitin-binding motif, GFP, fusion, fluorescent prote replication; HET: CR2; 1.60A {Aequorea victoria} PDB: 2kwu_A* 2ktf_B* 2l0g_A*
Probab=62.04 E-value=2.2 Score=43.54 Aligned_cols=24 Identities=50% Similarity=0.945 Sum_probs=19.9
Q ss_pred ccCCccccccCChHHHHHHH-HhhC
Q 006218 609 EEIDPSVIDELPKEIQDEIQ-AWLR 632 (656)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~-~~~~ 632 (656)
-++||.|+.|||+|.|+|+- .|=|
T Consensus 249 ~~vd~~vf~~lp~~vq~el~~~w~~ 273 (283)
T 3ai4_A 249 PDIDPQVFYELPEEVQKELMAEWER 273 (283)
T ss_dssp TTSCHHHHTTSCHHHHHHTTGGGC-
T ss_pred CCCCHHHHHhCCHHHHHHHHHHHHh
Confidence 36999999999999999974 5755
No 56
>2e8m_A Epidermal growth factor receptor kinase substrate 8; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.44 E-value=10 Score=33.04 Aligned_cols=52 Identities=23% Similarity=0.297 Sum_probs=40.8
Q ss_pred cccHHhhcccCCCccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHhhcccchhhHHHHHh
Q 006218 168 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 231 (656)
Q Consensus 168 ~~~v~~fL~~LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~FG~~~G~~L~~~ar 231 (656)
++++..||. -.|+...+. +.||+.|-.||..++++.|+..+| + |.+||..+.
T Consensus 36 p~EV~~WL~------~kgFS~~tv----~~Lg~ltGaqLl~Ltk~eL~~vCg-E-G~RlysqL~ 87 (99)
T 2e8m_A 36 PEDVKTWLQ------SKGFNPVTV----NSLGVLNGAQLFSLNKDELRTVCP-E-GARVYSQIT 87 (99)
T ss_dssp TTHHHHHHH------HHTCCHHHH----HHTSSSCHHHHHHCCHHHHHHHCT-T-HHHHHHHHH
T ss_pred HHHHHHHHH------HcCCCHHHH----HHHcCCCHHHHHcCCHHHHHHHCC-c-hHHHHHHHH
Confidence 567777773 345555443 378999999999999999999999 4 999998764
No 57
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=56.34 E-value=21 Score=33.03 Aligned_cols=76 Identities=17% Similarity=0.184 Sum_probs=52.2
Q ss_pred HHhCCceeEeccCcHHHHHHHhcCCCCCCeeecCcccHHhhcccCCCccccCCchHHHHHHHHhcCCcchhhhhcCCHHH
Q 006218 134 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDK 213 (656)
Q Consensus 134 ~~tGlt~SiGIA~NKlLAKLAS~~~KP~G~~vl~~~~v~~fL~~LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~ 213 (656)
+++|++. .++-|-+-+-...+.+|+......+..+.+||..+ |++ +-...+. ..||.+...|..++.+.
T Consensus 48 ~~lGIt~---~gHrkkil~ai~~L~~~~~~~~~~p~~v~~WL~~i------gL~-qY~~~F~-~~g~d~~~~l~~lt~~d 116 (149)
T 3sei_A 48 TAIGVTK---PGHRKKIAAEISGLSIPDWLPEHKPANLAVWLSMI------GLA-QYYKVLV-DNGYENIDFITDITWED 116 (149)
T ss_dssp HHTTCCS---HHHHHHHHHHHHTCCCCCCSCSSCCSCHHHHHHHT------TCG-GGHHHHH-HTTCCSHHHHTTCCHHH
T ss_pred HHcCCCC---HHHHHHHHHHHHHHHhccccCCCCcccHHHHHHHc------Cch-hhHHHHH-HCCCchHHHHhhCCHHH
Confidence 4566653 24555444444556677654444567899999887 444 4455675 89999999999999999
Q ss_pred HHHhhccc
Q 006218 214 LQESYGFN 221 (656)
Q Consensus 214 L~~~FG~~ 221 (656)
| +.+|+.
T Consensus 117 L-~~lGI~ 123 (149)
T 3sei_A 117 L-QEIGIT 123 (149)
T ss_dssp H-HHHTCC
T ss_pred H-HHCCCC
Confidence 9 568874
No 58
>3tvk_A DGC, diguanylate cyclase YDEH; putative zinc sensor, C-DI-GMP, transfe; HET: C2E; 1.80A {Escherichia coli}
Probab=52.99 E-value=19 Score=33.97 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHH--------hCCceeEeccC
Q 006218 122 VLIVTELRMQVLKE--------TEFTCSAGIAH 146 (656)
Q Consensus 122 ~~iA~~IR~~I~~~--------tGlt~SiGIA~ 146 (656)
..++.+|++.|.+. +.+++|+||+.
T Consensus 98 ~~~~~~i~~~i~~~~~~~~~~~~~vt~SiGia~ 130 (179)
T 3tvk_A 98 CRAGVRICQLVDNHAITHSEGHINITVTAGVSR 130 (179)
T ss_dssp HHHHHHHHHHHHHSCEEETTEEECCCEEEEEEE
T ss_pred HHHHHHHHHHHHcCCcccCCceEEEEEEEEEEe
Confidence 35677788877542 36899999983
No 59
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=52.49 E-value=9.5 Score=43.18 Aligned_cols=50 Identities=26% Similarity=0.286 Sum_probs=41.1
Q ss_pred CccccCCchHHHHHHHHhcC-CcchhhhhcCCHHHHHHh--hcccchhhHHHHH
Q 006218 180 IKKMKQLGGKLGTSLQNELG-VTTVGDLLKFSEDKLQES--YGFNTGTWLWNIA 230 (656)
Q Consensus 180 I~kL~GIG~kt~~kL~~~lG-I~TigDLa~l~~~~L~~~--FG~~~G~~L~~~a 230 (656)
.=+|-|+|.++.++|. ..| |+++.||..++.+.|... ||.+.+..|++..
T Consensus 448 amdI~GlG~~~i~~L~-~~g~i~~~~Dly~L~~~~L~~l~g~geKsa~nL~~aI 500 (586)
T 4glx_A 448 AMDVDGMGDKIIDQLV-EKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNAL 500 (586)
T ss_dssp TTCCTTCCHHHHHHHH-HTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred cccCCCcCHHHHHHHH-hcCCCCCHHHHhCCCHHHHhcccCccHHHHHHHHHHH
Confidence 3467899999999998 777 699999999999998874 7877777776543
No 60
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=48.59 E-value=10 Score=37.41 Aligned_cols=52 Identities=12% Similarity=0.019 Sum_probs=41.7
Q ss_pred ccCCchHHHHHHHHhcCCcchh-hhhcCCHHHHHHh--hcccchhhHHHHHhcCC
Q 006218 183 MKQLGGKLGTSLQNELGVTTVG-DLLKFSEDKLQES--YGFNTGTWLWNIARGIS 234 (656)
Q Consensus 183 L~GIG~kt~~kL~~~lGI~Tig-DLa~l~~~~L~~~--FG~~~G~~L~~~arGiD 234 (656)
++|||++++.++...+|..++. .+..-+.+.|.+. .|+++++++...+++.-
T Consensus 93 v~GIGpk~A~~Ils~~~~~~l~~aI~~~d~~~L~~vpGIG~KtA~rIi~elk~kl 147 (212)
T 2ztd_A 93 VSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDKV 147 (212)
T ss_dssp STTCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHTTTC
T ss_pred cCCcCHHHHHHHHHhCCHHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHHhh
Confidence 8899999999888788888776 4667788888887 56677888888887754
No 61
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=47.04 E-value=12 Score=47.68 Aligned_cols=60 Identities=10% Similarity=0.120 Sum_probs=48.1
Q ss_pred CCCccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHhhccc--chhhHHHHHhcCCCccc
Q 006218 178 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFN--TGTWLWNIARGISGEEV 238 (656)
Q Consensus 178 LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~FG~~--~G~~L~~~arGiD~~~V 238 (656)
.|+..|||||+..+++|. ..||+|+.||+.++.+.+.+.++.. .|..+.+.++....-.|
T Consensus 1557 ~~L~qip~i~~~~ar~l~-~~gi~t~~dl~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~i~~ 1618 (1724)
T 4f92_B 1557 SYLKQLPHFTSEHIKRCT-DKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIEL 1618 (1724)
T ss_dssp CGGGGSTTCCHHHHHHHH-HHTCCSHHHHHSSCHHHHTTSSCCCHHHHHHHHHHHHHSCCEEE
T ss_pred cCEecCCCCCHHHHHHHH-HCCCCCHHHHHhCCHHHHHHHHCCChHHHHHHHHHHHhCCceEE
Confidence 578899999999999997 9999999999999999998887742 35566666665544333
No 62
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=44.64 E-value=19 Score=39.08 Aligned_cols=49 Identities=12% Similarity=0.220 Sum_probs=36.4
Q ss_pred CccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHhhcccchhhHHHHHhcC
Q 006218 180 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 233 (656)
Q Consensus 180 I~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~FG~~~G~~L~~~arGi 233 (656)
+..|+|||+.++++|.+.+| |+.-+...+.+.|+. -|. |..-.+...|+
T Consensus 470 LtAIaGIGp~tAeRLLEkFG--SVe~Vm~AteDELRe-dGI--GekqarrI~gl 518 (685)
T 4gfj_A 470 LISIRGIDRERAERLLKKYG--GYSKVREAGVEELRE-DGL--TDAQIRELKGL 518 (685)
T ss_dssp HHTSTTCCHHHHHHHHHHHT--SHHHHHHSCHHHHHH-TTC--CHHHHHHHHTC
T ss_pred eeccCCCCHHHHHHHHHHhc--CHHHHHhCCHHHHHH-ccc--cHHHHHHHhhH
Confidence 35689999999999988887 677777788888855 664 55555566665
No 63
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=44.02 E-value=4.8 Score=42.03 Aligned_cols=52 Identities=13% Similarity=0.134 Sum_probs=0.0
Q ss_pred CCcccc--CCchHHHHHHHHhcCCcchhhhhcCCHHHHHHhhccc--chhhHHHHHh
Q 006218 179 PIKKMK--QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFN--TGTWLWNIAR 231 (656)
Q Consensus 179 PI~kL~--GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~FG~~--~G~~L~~~ar 231 (656)
||.+++ ||+..+..+|. ..||+|+.||+..++..|.+.-|.. ....+.+.+.
T Consensus 26 ~~~~l~~~g~~~~~~~~l~-~~g~~t~~~~~~~~~~~l~~~~~is~~~~~~~~~~a~ 81 (343)
T 1v5w_A 26 DIDLLQKHGINVADIKKLK-SVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAAN 81 (343)
T ss_dssp ---------------------------------------------------------
T ss_pred cHHHHhhCCCCHHHHHHHH-HcCCCcHHHHHhCCHHHHHHhhCCCHHHHHHHHHHHH
Confidence 888898 99999999997 9999999999999988888776642 2344555444
No 64
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=43.15 E-value=8.6 Score=43.21 Aligned_cols=80 Identities=15% Similarity=0.155 Sum_probs=54.7
Q ss_pred eccCcHHHHHHHhcCCCCCCeeecCcccHHhhcccCCCccccCCchHHHHHHHHhcCCcchhhhhc-CCHHHHHHhhccc
Q 006218 143 GIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLK-FSEDKLQESYGFN 221 (656)
Q Consensus 143 GIA~NKlLAKLAS~~~KP~G~~vl~~~~v~~fL~~LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~-l~~~~L~~~FG~~ 221 (656)
|||+.+-++-+.. ..+.+.+++...+..-.+.++||||+|+++++ .+|+.-..|+.. ++.......
T Consensus 100 GvGpk~A~~~~~~-------lg~~~~~~l~~a~~~~~l~~~~GiG~k~a~~i--~~~l~~~~~~~~r~~~~e~~~~---- 166 (575)
T 3b0x_A 100 GVGPKTARLLYEG-------LGIDSLEKLKAALDRGDLTRLKGFGPKRAERI--REGLALAQAAGKRRPLGAVLSL---- 166 (575)
T ss_dssp TTCHHHHHHHHHT-------SCCCSHHHHHHHHHHTGGGGSTTCCHHHHHHH--HHHHHHHHHHTCCEEHHHHHHH----
T ss_pred CcCHHHHHHHHHh-------cCCCCHHHHHHHHHcCCcccCCCCCccHHHHH--HHHHHHHHHhccceeHHHHHHH----
Confidence 9999776665543 12335566666665555889999999999998 478888888764 566555432
Q ss_pred chhhHHHHHhcCCCc
Q 006218 222 TGTWLWNIARGISGE 236 (656)
Q Consensus 222 ~G~~L~~~arGiD~~ 236 (656)
+..+...++++++.
T Consensus 167 -~~~i~~~l~~~~~~ 180 (575)
T 3b0x_A 167 -ARSLLEAIRALPGV 180 (575)
T ss_dssp -HHHHHHHHHTSTTC
T ss_pred -HHHHHHHHHhCCCC
Confidence 44567777777653
No 65
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=42.02 E-value=17 Score=29.45 Aligned_cols=48 Identities=25% Similarity=0.241 Sum_probs=37.3
Q ss_pred ccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHhhcc--cchhhHHHHHh
Q 006218 183 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF--NTGTWLWNIAR 231 (656)
Q Consensus 183 L~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~FG~--~~G~~L~~~ar 231 (656)
..||+...+.+|. .-|++|+.+++..|...|...=|. .....|...|+
T Consensus 11 ~lgI~e~~a~~L~-~~Gf~tve~vA~~~~~eL~~I~G~dE~~a~~l~~~A~ 60 (70)
T 1u9l_A 11 YLDIDEDFATVLV-EEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAK 60 (70)
T ss_dssp HHTCCHHHHHHHH-HTTCCCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHH-HcCcCcHHHHHcCCHHHHhhccCCCHHHHHHHHHHHH
Confidence 4599999999997 999999999999999998776453 23444544443
No 66
>1wwu_A Hypothetical protein FLJ21935; structural genomics, protein regulation, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens}
Probab=40.71 E-value=24 Score=30.69 Aligned_cols=53 Identities=19% Similarity=0.366 Sum_probs=41.8
Q ss_pred cccHHhhcccCCCccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHhhcccchhhHHHHHh
Q 006218 168 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 231 (656)
Q Consensus 168 ~~~v~~fL~~LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~FG~~~G~~L~~~ar 231 (656)
++++..||. -.|++..+. +.||+.|-.||..++++.|+..+|. -|.+||..+.
T Consensus 26 p~EV~~WL~------~kgFS~~tv----~~Lg~ltGaqLf~Ltk~eL~~vCg~-EG~RlysqL~ 78 (99)
T 1wwu_A 26 PDEVRAWLE------AKAFSPRIV----ENLGILTGPQLFSLNKEELKKVCGE-EGVRVYSQLT 78 (99)
T ss_dssp HHHHHHHHH------HHTCCTTHH----HHTTSSCHHHHHTCCHHHHHHHHTT-THHHHHHHHH
T ss_pred HHHHHHHHH------HcCCCHHHH----HHHcCCCHHHHHcCCHHHHHHHCcc-hhHHHHHHHH
Confidence 467777774 345655543 3689999999999999999999994 6999998765
No 67
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=38.70 E-value=22 Score=30.74 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=23.6
Q ss_pred CccccCCchHHHHHHHHhcCCcchhhhhcC
Q 006218 180 IKKMKQLGGKLGTSLQNELGVTTVGDLLKF 209 (656)
Q Consensus 180 I~kL~GIG~kt~~kL~~~lGI~TigDLa~l 209 (656)
+..|||||+++++++-..-++.++.||...
T Consensus 28 L~~lpGIG~~~A~~IV~~GpF~s~edL~~V 57 (97)
T 3arc_U 28 FIQYRGLYPTLAKLIVKNAPYESVEDVLNI 57 (97)
T ss_dssp GGGSTTCTTHHHHHHHHHCCCSSGGGGGGC
T ss_pred HhHCCCCCHHHHHHHHHcCCCCCHHHHHhc
Confidence 346899999999998744457889988865
No 68
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=38.35 E-value=13 Score=41.79 Aligned_cols=28 Identities=25% Similarity=0.272 Sum_probs=24.7
Q ss_pred CccccCCchHHHHHHHHhcCCcchhhhhc
Q 006218 180 IKKMKQLGGKLGTSLQNELGVTTVGDLLK 208 (656)
Q Consensus 180 I~kL~GIG~kt~~kL~~~lGI~TigDLa~ 208 (656)
+.+|||||++++.+|. .-||.|+.||..
T Consensus 99 L~~v~GVGpk~A~~i~-~~G~~s~edL~~ 126 (578)
T 2w9m_A 99 LLGVRGLGPKKIRSLW-LAGIDSLERLRE 126 (578)
T ss_dssp HTTSTTCCHHHHHHHH-HTTCCSHHHHHH
T ss_pred HhCCCCcCHHHHHHHH-HcCCCCHHHHHH
Confidence 3579999999999997 559999999986
No 69
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=36.60 E-value=15 Score=38.65 Aligned_cols=52 Identities=12% Similarity=0.254 Sum_probs=31.8
Q ss_pred CccccCCchHHHHHHHHhc----CCcchhhhhcCCHHHHHHhh------cccchhhHHHHHhcCCCc
Q 006218 180 IKKMKQLGGKLGTSLQNEL----GVTTVGDLLKFSEDKLQESY------GFNTGTWLWNIARGISGE 236 (656)
Q Consensus 180 I~kL~GIG~kt~~kL~~~l----GI~TigDLa~l~~~~L~~~F------G~~~G~~L~~~arGiD~~ 236 (656)
+..|||||++++.++. .+ .+..+.+|..- .. +.+.| |++++..+|+. |+..-
T Consensus 59 l~~lpGIG~~~A~kI~-E~l~tG~~~~le~l~~~-~p-~l~ll~~v~GiG~k~a~~l~~~--Gi~tl 120 (335)
T 2bcq_A 59 ACSIPGIGKRMAEKII-EILESGHLRKLDHISES-VP-VLELFSNIWGAGTKTAQMWYQQ--GFRSL 120 (335)
T ss_dssp HHTSTTCCHHHHHHHH-HHHHSSSCGGGGGCCTT-HH-HHHHHHTSTTCCHHHHHHHHHT--TCCSH
T ss_pred HhcCCCccHHHHHHHH-HHHHcCCchHHHHHhhh-hH-HHHHHhcCCCcCHHHHHHHHHc--CCCCH
Confidence 5689999999999986 44 24455555321 11 33334 45566777764 77653
No 70
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=36.58 E-value=19 Score=35.47 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=13.8
Q ss_pred CccccCCchHHHHHHH
Q 006218 180 IKKMKQLGGKLGTSLQ 195 (656)
Q Consensus 180 I~kL~GIG~kt~~kL~ 195 (656)
+++|||||+|++.||.
T Consensus 28 l~~LPGIG~KsA~RlA 43 (212)
T 3vdp_A 28 LSKLPGIGPKTAQRLA 43 (212)
T ss_dssp HHTSTTCCHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHH
Confidence 3578999999999995
No 71
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=35.05 E-value=18 Score=40.60 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=34.6
Q ss_pred ccccCCchHHHHHHHHhcCCcchhhhhcCC-HHHHHHh--hcccchhhHHHHHh
Q 006218 181 KKMKQLGGKLGTSLQNELGVTTVGDLLKFS-EDKLQES--YGFNTGTWLWNIAR 231 (656)
Q Consensus 181 ~kL~GIG~kt~~kL~~~lGI~TigDLa~l~-~~~L~~~--FG~~~G~~L~~~ar 231 (656)
..+||||++++.++...+|+.|+.||...- ...|.+. ||.++++++...+.
T Consensus 96 ~~v~GvGpk~A~~~~~~lg~~~~~~l~~a~~~~~l~~~~GiG~k~a~~i~~~l~ 149 (575)
T 3b0x_A 96 MEVPGVGPKTARLLYEGLGIDSLEKLKAALDRGDLTRLKGFGPKRAERIREGLA 149 (575)
T ss_dssp HTSTTTCHHHHHHHHHTSCCCSHHHHHHHHHHTGGGGSTTCCHHHHHHHHHHHH
T ss_pred hcCCCcCHHHHHHHHHhcCCCCHHHHHHHHHcCCcccCCCCCccHHHHHHHHHH
Confidence 478999999999987468999999998631 1224332 56566665544443
No 72
>3hva_A Protein FIMX; ggdef diguanylate cyclase, biofilm, C-DI-GMP, transferase; 2.04A {Pseudomonas aeruginosa PAO1}
Probab=33.43 E-value=1e+02 Score=27.46 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHH--------HhCCceeEeccC
Q 006218 122 VLIVTELRMQVLK--------ETEFTCSAGIAH 146 (656)
Q Consensus 122 ~~iA~~IR~~I~~--------~tGlt~SiGIA~ 146 (656)
..++.+|+..+.+ ...+++|+||+.
T Consensus 109 ~~~~~~i~~~~~~~~~~~~~~~~~~~~siGi~~ 141 (177)
T 3hva_A 109 QAALQRLLKKVENHLFELNGRSAQATLSIGVAG 141 (177)
T ss_dssp HHHHHHHHHHHHTCCEEETTEEECCCEEEEEEE
T ss_pred HHHHHHHHHHHHhCccccCCceeeEEEEEEEEE
Confidence 4577888888865 235899999974
No 73
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=32.45 E-value=30 Score=31.69 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=28.7
Q ss_pred ecCcccHHhhcccCCCccccCCchHHHHHHHHhc-CCcchhhhhcCC
Q 006218 165 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNEL-GVTTVGDLLKFS 210 (656)
Q Consensus 165 vl~~~~v~~fL~~LPI~kL~GIG~kt~~kL~~~l-GI~TigDLa~l~ 210 (656)
-|...++.++. .+||||++.++++- .. ...++.||.+.+
T Consensus 56 niNtA~~~eL~------~LpGiGp~~A~~II-~~GpF~svedL~~V~ 95 (134)
T 1s5l_U 56 DLNNTNIAAFI------QYRGLYPTLAKLIV-KNAPYESVEDVLNIP 95 (134)
T ss_dssp ETTTSCGGGGG------GSTTCTHHHHHHHH-HTCCCSSGGGGGGCT
T ss_pred eCcccCHHHHH------HCCCCCHHHHHHHH-HcCCCCCHHHHHhCC
Confidence 34444554443 68999999999987 55 588999999863
No 74
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=30.77 E-value=26 Score=34.87 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=13.8
Q ss_pred CccccCCchHHHHHHH
Q 006218 180 IKKMKQLGGKLGTSLQ 195 (656)
Q Consensus 180 I~kL~GIG~kt~~kL~ 195 (656)
+++|||||+|++.||.
T Consensus 14 l~~LPGIG~KSA~RlA 29 (228)
T 1vdd_A 14 LSRLPGIGPKSAQRLA 29 (228)
T ss_dssp HHTSTTCCHHHHHHHH
T ss_pred HhHCCCCCHHHHHHHH
Confidence 3578999999999995
No 75
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=30.77 E-value=23 Score=30.08 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=19.4
Q ss_pred ccccCCchHHHHHHHHhc----CCcchhhhhcC
Q 006218 181 KKMKQLGGKLGTSLQNEL----GVTTVGDLLKF 209 (656)
Q Consensus 181 ~kL~GIG~kt~~kL~~~l----GI~TigDLa~l 209 (656)
..|+|||.+++.++.+.. .+.++.||..+
T Consensus 43 ~~ipGIG~~~A~~Il~~r~~~g~f~s~edL~~v 75 (98)
T 2edu_A 43 RSLQRIGPKKAQLIVGWRELHGPFSQVEDLERV 75 (98)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHCCCSSGGGGGGS
T ss_pred HHCCCCCHHHHHHHHHHHHhcCCcCCHHHHHhC
Confidence 457889988888776433 35567776554
No 76
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=29.55 E-value=38 Score=30.13 Aligned_cols=36 Identities=11% Similarity=0.265 Sum_probs=25.0
Q ss_pred CccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHH
Q 006218 180 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQ 215 (656)
Q Consensus 180 I~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~ 215 (656)
++.|.|||+.++..+.+.+||.--.-+-.++.+++.
T Consensus 18 Lt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~ 53 (114)
T 3r8n_M 18 LTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQID 53 (114)
T ss_dssp GGGSTTCCHHHHHHHHHHTTCCTTCCSTTCCHHHHH
T ss_pred HhhhcCcCHHHHHHHHHHcCcCcccCcccCCHHHHH
Confidence 478999999999998889999643333334444443
No 77
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=28.16 E-value=37 Score=31.51 Aligned_cols=42 Identities=12% Similarity=0.263 Sum_probs=29.8
Q ss_pred CCCccccCCchHHHHHHHHhcCCc---chhhhhcCCHHHHHHhhc
Q 006218 178 LPIKKMKQLGGKLGTSLQNELGVT---TVGDLLKFSEDKLQESYG 219 (656)
Q Consensus 178 LPI~kL~GIG~kt~~kL~~~lGI~---TigDLa~l~~~~L~~~FG 219 (656)
.-++.|.|||+.++..+.+.+||. .++||-.-..+.|...+.
T Consensus 30 ~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~ 74 (146)
T 3u5c_S 30 YALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQ 74 (146)
T ss_dssp TTGGGSTTCCHHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHHHHT
T ss_pred hhHhhhcCCCHHHHHHHHHHcCCCCCceeccCCHHHHHHHHHHHH
Confidence 456789999999999988899994 566665443444554443
No 78
>3ign_A Diguanylate cyclase; ggdef domain, A1U3W3_marav, NESG, MQR89A, structural genomics, PSI-2, protein structure initiative; HET: C2E; 1.83A {Marinobacter aquaeolei VT8}
Probab=25.73 E-value=80 Score=28.25 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHH--------HhCCceeEeccC
Q 006218 122 VLIVTELRMQVLK--------ETEFTCSAGIAH 146 (656)
Q Consensus 122 ~~iA~~IR~~I~~--------~tGlt~SiGIA~ 146 (656)
..++.+|+..+.+ ...+++|+||+.
T Consensus 104 ~~~~~~i~~~~~~~~~~~~~~~~~~~~siGi~~ 136 (177)
T 3ign_A 104 RVICERIREAIEKSTVSTSAGDIQYTVSMGIAQ 136 (177)
T ss_dssp HHHHHHHHHHHHTCCEECSSCEECCCEEEEEEE
T ss_pred HHHHHHHHHHHHhcCcccCCCceeEEEEEEEEe
Confidence 4577888888865 245789999983
No 79
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=24.67 E-value=40 Score=38.71 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=14.7
Q ss_pred cCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHh
Q 006218 184 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES 217 (656)
Q Consensus 184 ~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~ 217 (656)
+|||.++++.|...+ .++..|...+.+.|...
T Consensus 518 ~~VG~~~Ak~La~~F--gsl~~l~~As~eeL~~i 549 (671)
T 2owo_A 518 REVGEATAAGLAAYF--GTLEALEAASIEELQKV 549 (671)
T ss_dssp TTCCHHHHHHHHHHH--CSHHHHHTCCHHHHTTS
T ss_pred cCccHHHHHHHHHHc--CCHHHHHhCCHHHHhhc
Confidence 455555555554222 23444444555544444
No 80
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=24.00 E-value=44 Score=31.36 Aligned_cols=40 Identities=13% Similarity=0.243 Sum_probs=27.9
Q ss_pred CccccCCchHHHHHHHHhcCCc---chhhhhcCCHHHHHHhhc
Q 006218 180 IKKMKQLGGKLGTSLQNELGVT---TVGDLLKFSEDKLQESYG 219 (656)
Q Consensus 180 I~kL~GIG~kt~~kL~~~lGI~---TigDLa~l~~~~L~~~FG 219 (656)
++.|.|||+.++..+...+||. .++||-.-..+.|...+.
T Consensus 32 Lt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i~ 74 (155)
T 2xzm_M 32 LTGIRGIGRRFAYIICKVLKIDPNARAGLLTEDQCNKITDLIA 74 (155)
T ss_dssp HTTSTTCCHHHHHHHHHHTTCCSSSCSSCSCHHHHHHHHHHHH
T ss_pred eecccccCHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHh
Confidence 4789999999999988899995 456555433344444443
No 81
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=23.94 E-value=77 Score=33.46 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHH----------HhCCceeEeccC
Q 006218 122 VLIVTELRMQVLK----------ETEFTCSAGIAH 146 (656)
Q Consensus 122 ~~iA~~IR~~I~~----------~tGlt~SiGIA~ 146 (656)
..++.+|+..|.+ ...+++|+||+.
T Consensus 384 ~~~~~~i~~~~~~~~~~~~~~~~~~~~t~siG~~~ 418 (459)
T 1w25_A 384 LRIAERIRMHVSGSPFTVAHGREMLNVTISIGVSA 418 (459)
T ss_dssp HHHHHHHHHHHHTSCEECGGGSCEECCCEEEEEEE
T ss_pred HHHHHHHHHHHHhCCccccCCCceeEEEEEEEEEe
Confidence 4678888888863 246899999963
No 82
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=23.85 E-value=36 Score=36.01 Aligned_cols=55 Identities=15% Similarity=0.220 Sum_probs=33.7
Q ss_pred CccccCCchHHHHHHHHhc--C-Ccchhhhhc--CC--HHHHHHhhc--ccchhhHHHHHhcCCCc
Q 006218 180 IKKMKQLGGKLGTSLQNEL--G-VTTVGDLLK--FS--EDKLQESYG--FNTGTWLWNIARGISGE 236 (656)
Q Consensus 180 I~kL~GIG~kt~~kL~~~l--G-I~TigDLa~--l~--~~~L~~~FG--~~~G~~L~~~arGiD~~ 236 (656)
+.+|||||++++.++.+-+ | +..+.+|.. .+ ...|.+.+| ++++..+|+. |+..-
T Consensus 63 l~~lpGIG~~~A~kI~E~l~tG~~~~le~L~~d~~~~~l~~l~~I~GvG~kta~~l~~~--Gi~tl 126 (360)
T 2ihm_A 63 LHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERYQTMKLFTQVFGVGVKTANRWYQE--GLRTL 126 (360)
T ss_dssp GTTCTTCCHHHHHHHHHHHHHSCCHHHHHHHHSHHHHHHHHHHTSTTCCHHHHHHHHHT--TCCSH
T ss_pred HhcCCCCCHHHHHHHHHHHHcCChHHHHHHhcccchHHHHHHhCCCCCCHHHHHHHHHc--CCCCH
Confidence 6789999999999886322 2 444555543 11 234555555 3556777765 77653
No 83
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=23.81 E-value=47 Score=31.05 Aligned_cols=39 Identities=15% Similarity=0.306 Sum_probs=28.0
Q ss_pred CccccCCchHHHHHHHHhcCCc---chhhhhcCCHHHHHHhh
Q 006218 180 IKKMKQLGGKLGTSLQNELGVT---TVGDLLKFSEDKLQESY 218 (656)
Q Consensus 180 I~kL~GIG~kt~~kL~~~lGI~---TigDLa~l~~~~L~~~F 218 (656)
++.|.|||+.++..+.+.+||. .++||-.-..+.|...+
T Consensus 30 Lt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i 71 (152)
T 3iz6_M 30 LTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVV 71 (152)
T ss_dssp HTTSTTCCHHHHHHHHHHHTCCSSSBTTTSCHHHHHHHHHHH
T ss_pred hhhccCcCHHHHHHHHHHcCCCCCcEeCcCCHHHHHHHHHHH
Confidence 4678999999999988899994 66666544344444444
No 84
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=23.62 E-value=69 Score=40.80 Aligned_cols=60 Identities=10% Similarity=0.231 Sum_probs=49.3
Q ss_pred cCCCccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHhhcc-cchhhHHHHHhcCCCccc
Q 006218 177 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF-NTGTWLWNIARGISGEEV 238 (656)
Q Consensus 177 ~LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~FG~-~~G~~L~~~arGiD~~~V 238 (656)
..|+..++|||....++|. ..|+ |+.+|..++...|...++. ..|..++..++-...-.+
T Consensus 725 ~~~L~q~~~i~~~~~~~l~-~~~~-~~~~l~~~~~~~l~~~~~~~~~g~~i~~~~~~~P~~~~ 785 (1724)
T 4f92_B 725 MCPLRQFRKLPEEVVKKIE-KKNF-PFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLEL 785 (1724)
T ss_dssp SCGGGGSTTSCHHHHHHHH-TSSC-CGGGGGGCCHHHHHHHHTCSTTHHHHHHHHTTSCCEEE
T ss_pred CCceecCCCCCHHHHHHHH-hcCC-CHHHHHhCCHHHHHHHHCCchHHHHHHHHHHHCCCceE
Confidence 4688999999999999996 8999 9999999999888776652 358889998887655443
No 85
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=23.50 E-value=42 Score=30.39 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=22.8
Q ss_pred CccccCCchHHHHHHHHhcCCcc---hhhhhc
Q 006218 180 IKKMKQLGGKLGTSLQNELGVTT---VGDLLK 208 (656)
Q Consensus 180 I~kL~GIG~kt~~kL~~~lGI~T---igDLa~ 208 (656)
++.|.|||+.++..+...+||.. ++||-.
T Consensus 19 Lt~I~GIG~~~A~~I~~~~gi~~~~r~~~Lt~ 50 (126)
T 2vqe_M 19 LTYIYGIGKARAKEALEKTGINPATRVKDLTE 50 (126)
T ss_dssp HTTSSSCCSHHHHHHTTTTTCCTTSBGGGCCH
T ss_pred hhccccccHHHHHHHHHHcCCCcccccCcCCH
Confidence 46899999999999888999954 555543
No 86
>3hvw_A Diguanylate-cyclase (DGC); alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.70A {Pseudomonas aeruginosa}
Probab=22.43 E-value=95 Score=28.08 Aligned_cols=25 Identities=8% Similarity=0.008 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHH-------HhCCceeEeccC
Q 006218 122 VLIVTELRMQVLK-------ETEFTCSAGIAH 146 (656)
Q Consensus 122 ~~iA~~IR~~I~~-------~tGlt~SiGIA~ 146 (656)
..++.+|+..+.+ ...+++|+||+.
T Consensus 94 ~~~~~~l~~~~~~~~~~~~~~~~~~~siGi~~ 125 (176)
T 3hvw_A 94 ESVCLRLLRAFESPVVCRGIPIKANVGLGVLP 125 (176)
T ss_dssp HHHHHHHHHHTTSCEEETTEEECCCCEEEEEE
T ss_pred HHHHHHHHHHHhCCcccCCEEEEEEEEEEEEe
Confidence 4567777777653 346889999874
No 87
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=22.25 E-value=39 Score=35.37 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=32.7
Q ss_pred CccccCCchHHHHHHHHhc--C-CcchhhhhcCC-H---HHHHHhhc--ccchhhHHHHHhcCCCc
Q 006218 180 IKKMKQLGGKLGTSLQNEL--G-VTTVGDLLKFS-E---DKLQESYG--FNTGTWLWNIARGISGE 236 (656)
Q Consensus 180 I~kL~GIG~kt~~kL~~~l--G-I~TigDLa~l~-~---~~L~~~FG--~~~G~~L~~~arGiD~~ 236 (656)
+..|||||++++.++.+-+ | +..+.+|..-+ + ..|.+.+| ++++..+|+. |+..-
T Consensus 59 l~~LpGIG~~~A~kI~E~l~tG~~~~le~l~~~~~~~~l~~l~~V~GiGpk~a~~l~~~--Gi~tl 122 (335)
T 2fmp_A 59 AKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDE--GIKTL 122 (335)
T ss_dssp HHTSTTCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHTTSTTCCHHHHHHHHHT--TCCSH
T ss_pred HhcCCCCcHHHHHHHHHHHHhCCcHHHHHHHcccchhHHHHHhCCCCCCHHHHHHHHHc--CCCCH
Confidence 5689999999999887322 2 33444444332 2 23444444 4556667765 77653
No 88
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.57 E-value=45 Score=31.00 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=27.5
Q ss_pred CccccCCchHHHHHHHHhcCCc---chhhhhcCCHHHHHHhh
Q 006218 180 IKKMKQLGGKLGTSLQNELGVT---TVGDLLKFSEDKLQESY 218 (656)
Q Consensus 180 I~kL~GIG~kt~~kL~~~lGI~---TigDLa~l~~~~L~~~F 218 (656)
++.|.|||+.++..+...+||. .++||-.-..+.|...+
T Consensus 25 Lt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~i~~~i 66 (148)
T 3j20_O 25 LTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEIL 66 (148)
T ss_dssp HHHSTTCCHHHHHHHHHHHTCCSSSCTTBCCHHHHHHHHHHH
T ss_pred hhhccCcCHHHHHHHHHHhCCCCCceeccCCHHHHHHHHHHH
Confidence 4678999999999988899995 46666543334444443
No 89
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=20.80 E-value=36 Score=38.21 Aligned_cols=90 Identities=13% Similarity=0.075 Sum_probs=59.6
Q ss_pred HHHHHHHHHhCCceeEeccCcHHHHHHHhcCCCCCCeeecCcccHHhhcccCCCccccCCchHHHHHHHHhcCCcchhhh
Q 006218 127 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDL 206 (656)
Q Consensus 127 ~IR~~I~~~tGlt~SiGIA~NKlLAKLAS~~~KP~G~~vl~~~~v~~fL~~LPI~kL~GIG~kt~~kL~~~lGI~TigDL 206 (656)
+.+..+..-++++ |||+.+-++-+.. | +.+.+++...+..-.|..+||||+|+++++. .||.-..++
T Consensus 91 ~~~~~~~~L~~v~---GVGpk~A~~i~~~------G--~~s~edL~~a~~~~~L~~~~GiG~Ktaq~I~--~~l~~~~~~ 157 (578)
T 2w9m_A 91 QLPPGLLDLLGVR---GLGPKKIRSLWLA------G--IDSLERLREAAESGELAGLKGFGAKSAATIL--ENVVFLFEA 157 (578)
T ss_dssp HSCHHHHHHTTST---TCCHHHHHHHHHT------T--CCSHHHHHHHHHHTTTTTSTTCCHHHHHHHH--HHHHHHHHH
T ss_pred hhHHHHHHHhCCC---CcCHHHHHHHHHc------C--CCCHHHHHHHHhhCccccCCCCCHHHHHHHH--HHHHHHHhh
Confidence 3344443334444 9999777776642 2 3456777776666689999999999999984 677777777
Q ss_pred hc-CCHHHHHHhhcccchhhHHHHHhcCC
Q 006218 207 LK-FSEDKLQESYGFNTGTWLWNIARGIS 234 (656)
Q Consensus 207 a~-l~~~~L~~~FG~~~G~~L~~~arGiD 234 (656)
.. ++...... .+..+...+++++
T Consensus 158 ~~r~~~~e~~~-----~~~~i~~~l~~~~ 181 (578)
T 2w9m_A 158 RQRQSLRAGLA-----VAEELAGALTDLS 181 (578)
T ss_dssp CSSEEHHHHHH-----HHHHHHHHTGGGC
T ss_pred cCCeeHHHHHH-----HHHHHHHHHHhCC
Confidence 64 45555443 2445677777776
No 90
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=20.80 E-value=45 Score=35.58 Aligned_cols=55 Identities=15% Similarity=0.266 Sum_probs=33.3
Q ss_pred CccccCCchHHHHHHHHhc--C-Ccchhhhhc-C-C--HHHHHHhhc--ccchhhHHHHHhcCCCc
Q 006218 180 IKKMKQLGGKLGTSLQNEL--G-VTTVGDLLK-F-S--EDKLQESYG--FNTGTWLWNIARGISGE 236 (656)
Q Consensus 180 I~kL~GIG~kt~~kL~~~l--G-I~TigDLa~-l-~--~~~L~~~FG--~~~G~~L~~~arGiD~~ 236 (656)
+.+|||||++++.++.+-+ | +..+.+|.. - + ...|.+.+| ++++..||+. |+..-
T Consensus 82 l~~lpGIG~~ia~kI~E~l~tG~~~~le~l~~d~~~~~l~~l~~I~GvGpk~a~~ly~~--Gi~tl 145 (381)
T 1jms_A 82 TEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRM--GFRTL 145 (381)
T ss_dssp GTTCSSCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHTSTTCCHHHHHHHHHT--TCCSH
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCcHHHHHHhcCcchhHHHHHHccCCCCHHHHHHHHHc--CCCcH
Confidence 7799999999999986322 3 334445543 1 1 223445555 3556777765 87653
No 91
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=20.66 E-value=24 Score=28.94 Aligned_cols=36 Identities=11% Similarity=0.331 Sum_probs=31.0
Q ss_pred CCcccccccccccccccccCCccccccCChHHHHHH
Q 006218 592 CGSDQIQQRSESWKLRIEEIDPSVIDELPKEIQDEI 627 (656)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (656)
|+.+.+..-+++=.|.=+-||.+++.+|-+|+-+++
T Consensus 12 aGv~~~~c~rYA~~F~~~ri~e~mL~Dl~~~~Lr~L 47 (72)
T 3idw_A 12 CGVDVSNCQRYTINFDREQLTEDMMPDINNSMLRTL 47 (72)
T ss_dssp TTCCHHHHHHHHHHHHHTTCCGGGGGGCCHHHHHHT
T ss_pred cCCChHHHHHHHHHHHHccCCHHHHhhCCHHHHHHc
Confidence 666666667888899999999999999999999875
No 92
>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: d.74.3.1 d.181.1.1 PDB: 1smy_A* 1zyr_A* 1iw7_A* 2a69_A* 2a6e_A 2a68_A* 2be5_A* 2cw0_A 2o5i_A 2o5j_A* 2ppb_A* 3aoh_A* 3aoi_A* 3dxj_A* 3eql_A* 1i6v_A* 1ynj_A* 1l9z_A 1l9u_A* 1ynn_A* ...
Probab=20.36 E-value=21 Score=37.17 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=0.0
Q ss_pred cCCCccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHh--hcccchhhHH
Q 006218 177 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLW 227 (656)
Q Consensus 177 ~LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~--FG~~~G~~L~ 227 (656)
.+||.+| .+.-+...=|. +.||+|+|||.+.+.+.|.+. ||.+....+.
T Consensus 253 ~~~i~~L-~LsvRs~NcLk-~a~I~ti~dL~~~se~~l~~~~n~G~kSl~Ei~ 303 (315)
T 2a6h_A 253 DLPLEEL-GLSTRVLHSLK-EEGIESVRALLALNLKDLKNIPGIGERSLEEIK 303 (315)
T ss_dssp -----------------------------------------------------
T ss_pred cCcHHHc-cCcHHHHHHHH-HcCCcCHHHHhhCCHHHHhcCCCCCcchHHHHH
Confidence 3788887 57778888886 999999999999998887653 7876444333
No 93
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_A
Probab=20.14 E-value=22 Score=37.36 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=0.0
Q ss_pred cCCCccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHh--hcccchhhH
Q 006218 177 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWL 226 (656)
Q Consensus 177 ~LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~--FG~~~G~~L 226 (656)
..||.+| .+.-+...-|. +.||+|+|||.+.+.+.|.+. ||.+....+
T Consensus 254 ~~~I~eL-eLsvRs~NCLK-ra~I~tv~dL~~~se~dLlki~n~G~kSl~EI 303 (329)
T 3lu0_A 254 LRPVDDL-ELTVRSANCLK-AEAIHYIGDLVQRTEVELLKTPNLGKKSLTEI 303 (329)
T ss_dssp ----------------------------------------------------
T ss_pred hhhHHhh-cCCHHHHHHHH-HcCCcCHHHHhhCCHHHHhhCcCCChhhHHHH
Confidence 3467777 56677888886 999999999999998887654 776544433
No 94
>3h7h_A Transcription elongation factor SPT4; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=20.11 E-value=48 Score=29.78 Aligned_cols=28 Identities=29% Similarity=0.596 Sum_probs=23.6
Q ss_pred cccccccccCCc--------cccccCChHHHHHHHH
Q 006218 602 ESWKLRIEEIDP--------SVIDELPKEIQDEIQA 629 (656)
Q Consensus 602 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 629 (656)
.+|-=+...||- +|-++||.||++|+..
T Consensus 71 ~SwVAk~~~i~~~vPG~YAlkV~g~lp~~i~~~le~ 106 (120)
T 3h7h_A 71 DSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKS 106 (120)
T ss_dssp GCHHHHHTTCTTSCSEEEEEEECCCCCHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCCeEEEEecCcCCHHHHHHHHH
Confidence 477777677776 8999999999999987
No 95
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=20.05 E-value=67 Score=36.88 Aligned_cols=52 Identities=27% Similarity=0.298 Sum_probs=29.2
Q ss_pred HhhcccCCCccccCCchHHHHHHHHhcCCcchhhhhcCCHHHHHHh--hcccchhhHHH
Q 006218 172 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWN 228 (656)
Q Consensus 172 ~~fL~~LPI~kL~GIG~kt~~kL~~~lGI~TigDLa~l~~~~L~~~--FG~~~G~~L~~ 228 (656)
..||..|- |+|||.+++++|.+.+ .++..|...+.+.|... +|...+..++.
T Consensus 504 ~R~L~alG---I~~VG~~~Ak~La~~F--gsl~~l~~As~eeL~~I~GIG~~~A~sI~~ 557 (667)
T 1dgs_A 504 ERLLYALG---LPGVGEVLARNLARRF--GTMDRLLEASLEELIEVEEVGELTARAILE 557 (667)
T ss_dssp HHHHHHTT---CSSCCHHHHHHHHHTT--SBHHHHTTCCHHHHHTSTTCCHHHHHHHHH
T ss_pred HHhhHhhc---cCCccHHHHHHHHHHc--CCHHHHHhCCHHHHHhccCcCHHHHHHHHH
Confidence 34444443 4677777777775333 35566666666666666 44444444443
Done!