BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>006219
MDIVESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVEC
PTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRA
ARPQSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPY
ICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTH
ELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADST
FGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISG
FLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSI
WDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYH
VKLKTKLFDDSHLGALQRVDWVSSQKDSSLTHLVWNPGSEFAFCDCAWSMQGNICKHVVK
VNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHNMLDQIKQLVELSS
SDDIGAVVNNLPLKWVSKKGRTSVGIPSSTLALPSSSKSSTVHKKNRKRKRLSRLR

High Scoring Gene Products

Symbol, full name Information P value
AT1G60560 protein from Arabidopsis thaliana 3.2e-283
AT4G13970 protein from Arabidopsis thaliana 3.3e-147

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  006219
        (656 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2036541 - symbol:AT1G60560 species:3702 "Arabi...  2300  3.2e-283  2
TAIR|locus:2129271 - symbol:AT4G13970 species:3702 "Arabi...  1272  3.3e-147  2


>TAIR|locus:2036541 [details] [associations]
            symbol:AT1G60560 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
            evidence=IEA] InterPro:IPR007527 Pfam:PF04434 PROSITE:PS50966
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0008270 EMBL:AY075639
            EMBL:BT002624 IPI:IPI00547630 RefSeq:NP_176256.2 UniGene:At.44138
            PRIDE:Q8RY56 EnsemblPlants:AT1G60560.1 GeneID:842351
            KEGG:ath:AT1G60560 TAIR:At1g60560 HOGENOM:HOG000084487
            InParanoid:Q8RY56 OMA:RSTHELD PhylomeDB:Q8RY56
            ProtClustDB:CLSN2690471 Genevestigator:Q8RY56 Uniprot:Q8RY56
        Length = 703

 Score = 2300 (814.7 bits), Expect = 3.2e-283, Sum P(2) = 3.2e-283
 Identities = 417/515 (80%), Positives = 468/515 (90%)

Query:     1 MDIVESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVEC 60
             M+IVESL +I VQ+P  EDFS  DLTWTKFGT+EHHD+VAL+PYARVD FIIGECSN EC
Sbjct:     1 MEIVESLEEIPVQNPQVEDFSWADLTWTKFGTSEHHDQVALVPYARVDEFIIGECSNAEC 60

Query:    61 PTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRA 120
             PTRFHIERGRKRSRGSLKEYK DEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRA
Sbjct:    61 PTRFHIERGRKRSRGSLKEYKSDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRA 120

Query:   121 ARPQSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPY 180
             ARPQSMRGCTCHFVVKRLYARPSLALLIYN+RRHVNK+GF+CHGPLDRDAIGPGAKKIPY
Sbjct:   121 ARPQSMRGCTCHFVVKRLYARPSLALLIYNERRHVNKAGFVCHGPLDRDAIGPGAKKIPY 180

Query:   181 ICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTH 240
             ICNEIQQQTMSMIYLGIPEE+VLEKHIEGIQRYCGSDA V+SLASQYV KLGMII+RSTH
Sbjct:   181 ICNEIQQQTMSMIYLGIPEENVLEKHIEGIQRYCGSDATVDSLASQYVHKLGMIIKRSTH 240

Query:   241 ELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADST 300
             ELDLDDQASI++W +RNKKSIFFYQ+SSETD F+LGIQTEWQLQQ++RFGH SL+AADST
Sbjct:   241 ELDLDDQASIKIWAERNKKSIFFYQESSETDQFMLGIQTEWQLQQLVRFGHCSLVAADST 300

Query:   301 FGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISG 360
             FGIKRLKYPLCTLLVFDSR HALPVAW+++RS  K DV KWMK LL RA+S+EPG+KI+G
Sbjct:   301 FGIKRLKYPLCTLLVFDSRHHALPVAWIISRSYLKSDVEKWMKILLQRAQSVEPGFKING 360

Query:   361 FLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSI 420
             F+IDDAA E DPIR+ FCCP+LFSLWRVRRSWLRN+VKKC +I++QR++FK LG ++YSI
Sbjct:   361 FIIDDAATETDPIRDTFCCPILFSLWRVRRSWLRNVVKKCDSIEVQRDLFKCLGELVYSI 420

Query:   421 WDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYH 480
             WDG D    LE L QDFVDQTAF++YF ++W+PK+ MWLSTM++LPLASQEA GAIEAYH
Sbjct:   421 WDGVDTTKALEKLTQDFVDQTAFMQYFTSTWLPKIGMWLSTMKSLPLASQEACGAIEAYH 480

Query:   481 VKLKTKLFDDSHLGALQRVDWVSSQKDSSLTHLVW 515
             +KLK KLFDD+HLGALQRVDW+  +  + L    W
Sbjct:   481 IKLKVKLFDDTHLGALQRVDWLVHKLTTELHSSYW 515

 Score = 445 (161.7 bits), Expect = 3.2e-283, Sum P(2) = 3.2e-283
 Identities = 79/125 (63%), Positives = 99/125 (79%)

Query:   502 VSSQKDSSLTHLVWNPGSEFAFCDCAWSMQGNICKHVVKVNMICANNEGYQPSMSFQSLR 561
             V SQ+DS +T +VWNPGSEFAFCDC WS+QGN+CKH++KVN +C N EGY  SMS +S +
Sbjct:   562 VQSQRDSDVTRVVWNPGSEFAFCDCTWSLQGNLCKHIIKVNTMCENREGYGDSMSLRSFK 621

Query:   562 EVLMNLWTKPMDDSVELDLSVAWTHNMLDQIKQLVELSSSDDIGAVVNNLPLKWVSKKGR 621
             E L N+  KPMDDS+ LDLS+A T  M DQIKQLV LS ++DI  +VN+LP+KW  KKGR
Sbjct:   622 EKLRNIKMKPMDDSIALDLSMALTLQMFDQIKQLVRLSGTNDISNIVNDLPVKWGCKKGR 681

Query:   622 TSVGI 626
             T++GI
Sbjct:   682 TTIGI 686


>TAIR|locus:2129271 [details] [associations]
            symbol:AT4G13970 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
            evidence=IEA] InterPro:IPR007527 PROSITE:PS50966 EMBL:CP002687
            GO:GO:0008270 IPI:IPI00538657 RefSeq:NP_193133.3 UniGene:At.44231
            PRIDE:F4JTW1 EnsemblPlants:AT4G13970.1 GeneID:827032
            KEGG:ath:AT4G13970 OMA:KPKVDGI Uniprot:F4JTW1
        Length = 778

 Score = 1272 (452.8 bits), Expect = 3.3e-147, Sum P(2) = 3.3e-147
 Identities = 226/512 (44%), Positives = 339/512 (66%)

Query:     5 ESLFDIQVQDPPEEDFSSIDLTWTKF-GTAEHHDEVALIPYARVDSFIIGECSNVECPTR 63
             + +F + VQ+P   +FSS DL W+K  G  ++ D +ALIPY RVD F+ GECSN +CPT 
Sbjct:     5 DQIFSLPVQNPTLPEFSSTDLVWSKVEGYRDNIDRLALIPYTRVDDFVRGECSNKDCPTS 64

Query:    64 FHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRAARP 123
             FH+E  R++++G   + K D  LEY LYWCSFGP++  +GG V PSR   +  +N A RP
Sbjct:    65 FHVEARRRKAKGKKYKPKVDGILEYILYWCSFGPDDNRKGGTVRPSRSTYVPKKNNAGRP 124

Query:   124 QSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPYICN 183
              S RGC CHF+VKRL A P++AL+IYN+ +HV++ GF CHGP D+ A G  A   PYI  
Sbjct:   125 NSKRGCRCHFIVKRLIAEPTVALVIYNNDKHVDEKGFPCHGPQDKKAAGTRAMFAPYISE 184

Query:   184 EIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTHELD 243
             +++ +  S++Y+G+  E+++++H E +++  G   + + L  +YV++L   IRRST+ELD
Sbjct:   185 DLRLRVSSLLYVGVSVETIMQRHNESVEKQGGPSNRDDLLTHRYVRRLERSIRRSTYELD 244

Query:   244 LDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADSTFGI 303
              DD  SI +WV+ ++  +FF++  S+TDPF LGIQTEWQLQQMIRFG+  L+A+DS FG 
Sbjct:   245 EDDDVSISMWVESHQSHVFFFEGFSDTDPFSLGIQTEWQLQQMIRFGNCRLLASDSRFGT 304

Query:   304 KRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLI 363
               LKYP+ +L+VFDS   A+PVAW++    +  D  +WM++L +R  + +P WK++GF++
Sbjct:   305 NTLKYPIHSLVVFDSENKAIPVAWIIAPRFSSGDAYRWMRALCNRVHAKDPSWKVAGFIV 364

Query:   364 DDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSIWDG 423
             DD  A+I  IR++F CP+LFS WR+R +W +NI+K+C   K + EI + LG  +  I   
Sbjct:   365 DDPFADIIAIRDVFQCPVLFSFWRLRHAWHKNIIKRCRETKTRVEISRHLGQAVDKISRR 424

Query:   424 ADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYHVKL 483
                    +  ++DFV    F+EYF++ W P++  W S +++LPLASQE   A+E YH +L
Sbjct:   425 QGTATLFDSFVEDFVGSPEFVEYFRSVWSPRIGAWTSALQSLPLASQETCAAMELYHYQL 484

Query:   484 KTKLFDDSHLGALQRVDWVSSQKDSSLTHLVW 515
             K +L ++    A QR DW+  +  + +    W
Sbjct:   485 KCRLLNERDSEAYQRADWLVDKLGTKVHSYFW 516

 Score = 187 (70.9 bits), Expect = 3.3e-147, Sum P(2) = 3.3e-147
 Identities = 35/101 (34%), Positives = 57/101 (56%)

Query:   502 VSSQKDSSLTHLVWNPGSEFAFCDCAWSMQGNICKHVVKVNMICANNEGYQPSMSFQSLR 561
             ++ + D +  H+VWNPGS+F  C C+W+ +G ICKH++K+  +C  N   + S S     
Sbjct:   561 ITDECDGNEIHVVWNPGSQFGVCSCSWAEKGYICKHMIKLTQLCLGNRAARQSASLLQYY 620

Query:   562 EVLMNLWTKPMDDSVELDLSVAWTHNMLDQIKQLVELSSSD 602
             + L++L   P  DS+  D +V+   ++  QI  L  L  SD
Sbjct:   621 QTLIDLLRCPPHDSLFRDYAVSLAVSVEKQINALGYLQKSD 661


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.137   0.429    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      656       628   0.00091  120 3  11 22  0.50    33
                                                     36  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  634 (67 KB)
  Total size of DFA:  398 KB (2192 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  54.00u 0.13s 54.13t   Elapsed:  00:00:03
  Total cpu time:  54.00u 0.13s 54.13t   Elapsed:  00:00:03
  Start:  Tue May 21 05:21:08 2013   End:  Tue May 21 05:21:11 2013

Back to top