BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006219
(656 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CT2|A Chain A, Crystal Structure Of Muconate Cycloisomerase From
Pseudomonas Fluorescens
pdb|3CT2|B Chain B, Crystal Structure Of Muconate Cycloisomerase From
Pseudomonas Fluorescens
pdb|3DGB|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Pseudomonas Fluorescens Complexed With Muconolactone
pdb|3FJ4|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Pseudomonas Fluorescens Complexed With Muconolactone
pdb|3FJ4|B Chain B, Crystal Structure Of Muconate Lactonizing Enzyme From
Pseudomonas Fluorescens Complexed With Muconolactone
Length = 382
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 249 SIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIR---FGHRSLIAADSTFGIKR 305
SI+ +DR + QD+S + +L +L+Q IR F + +A KR
Sbjct: 68 SIKTNIDRFVAPLLIGQDASNINAAML------RLEQSIRGNTFAKSGIESALLDAQGKR 121
Query: 306 LKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSL 345
L P+ LL R ALPVAW + D+ + K L
Sbjct: 122 LGLPVSELLGGRVRD-ALPVAWTLASGDTAKDIAEAQKML 160
>pdb|2XHL|A Chain A, Structure Of A Functional Derivative Of Clostridium
Botulinum Neurotoxin Type B
Length = 453
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 407 REIFKRLGNILYSIWDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALP 466
R I RL +L I +DP +N+ + F D+ F+E + + + + ++L
Sbjct: 297 RGIVDRLNKVLVCI---SDPNININIYKNKFKDKYKFVEDSEGKYSIDVESFDKLYKSLM 353
Query: 467 LASQEASGAIEAYHVKLKTKLFDDS 491
E + A E Y +K + F DS
Sbjct: 354 FGFTETNIA-ENYKIKTRASYFSDS 377
>pdb|1F82|A Chain A, Botulinum Neurotoxin Type B Catalytic Domain
Length = 424
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 407 REIFKRLGNILYSIWDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALP 466
R I RL +L I +DP +N+ + F D+ F+E + + + + ++L
Sbjct: 296 RGIVDRLNKVLVCI---SDPNININIYKNKFKDKYKFVEDSEGKYSIDVESFDKLYKSLM 352
Query: 467 LASQEASGAIEAYHVKLKTKLFDDS 491
E + A E Y +K + F DS
Sbjct: 353 FGFTETNIA-ENYKIKTRASYFSDS 376
>pdb|2ETF|A Chain A, Crystal Structure Of Full Length Botulinum Neurotoxin
(Type B) Light Chain
pdb|2ETF|B Chain B, Crystal Structure Of Full Length Botulinum Neurotoxin
(Type B) Light Chain
Length = 441
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 407 REIFKRLGNILYSIWDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALP 466
R I RL +L I +DP +N+ + F D+ F+E + + + + ++L
Sbjct: 297 RGIVDRLNKVLVCI---SDPNININIYKNKFKDKYKFVEDSEGKYSIDVESFDKLYKSLM 353
Query: 467 LASQEASGAIEAYHVKLKTKLFDDS 491
E + A E Y +K + F DS
Sbjct: 354 FGFTETNIA-ENYKIKTRASYFSDS 377
>pdb|1EPW|A Chain A, Crystal Structure Of Clostridium Neurotoxin Type B
pdb|1F31|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With A Trisaccharide
pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With Doxorubicin
pdb|1G9A|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With An Inhibitor (Experiment 3)
pdb|1G9B|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With An Inhibitor (Experiment 1)
pdb|1G9C|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With An Inhibitor (Experiment 4)
pdb|1G9D|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With An Inhibitor (Experiment 2)
pdb|1S0B|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 4.0
pdb|1S0C|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 5.0
pdb|1S0D|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 5.5
pdb|1S0E|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 6.0
pdb|1S0F|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 7.0
pdb|1S0G|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B Apo Form
pdb|2NP0|A Chain A, Crystal Structure Of The Botulinum Neurotoxin Type B
Complexed With Synaptotagamin-Ii Ectodomain
Length = 1290
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 407 REIFKRLGNILYSIWDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALP 466
R I RL +L I +DP +N+ + F D+ F+E + + + + ++L
Sbjct: 296 RGIVDRLNKVLVCI---SDPNININIYKNKFKDKYKFVEDSEGKYSIDVESFDKLYKSLM 352
Query: 467 LASQEASGAIEAYHVKLKTKLFDDS 491
E + A E Y +K + F DS
Sbjct: 353 FGFTETNIA-ENYKIKTRASYFSDS 376
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%)
Query: 459 LSTMRALPLASQEASGAIEAYHVKLKTKLFDDSHLGALQRVDWVSSQKDSSLTHLVWNPG 518
+S+ R L +Q SG A+ + + +KL +D H L R V L ++N
Sbjct: 90 ISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEA 149
Query: 519 SEFAF 523
+FAF
Sbjct: 150 RKFAF 154
>pdb|3SJS|A Chain A, Crystal Structure Of Ure3-Binding Protein From Entamoeba
Histolytica, (D127a,N129a) Mutant, Native Form
pdb|3SIA|A Chain A, Crystal Structure Of Ure3-Binding Protein, (D127a,N129a)
Mutant, Iodide Phased
Length = 220
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 60/145 (41%), Gaps = 26/145 (17%)
Query: 430 LEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYHVKLKTKLFD 489
+ + DF +F E+ +LA L M A + SG +E + +
Sbjct: 93 MRIFDTDFNGHISFYEFMAMYKFMELAYNLFVMNA-----RARSGTLEPHEI-------- 139
Query: 490 DSHLGALQRVDWVSSQKDSSLTHLVWNPGSEFAFCD-------CAWSMQGNICKHVVKVN 542
L ALQ++ + +Q+ S L H ++ G AFCD CA++ Q ++ +N
Sbjct: 140 ---LPALQQLGFYINQRTSLLLHRLFARG--MAFCDLNCWIAICAFAAQTRSAYQMIFMN 194
Query: 543 MICANNEGYQPSMSFQSLREVLMNL 567
+ + P M F +V+ +L
Sbjct: 195 PYYGPMKPFNP-MEFGKFLDVVTSL 218
>pdb|3ZUQ|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type B-Derivative, Lc-B-Gs-Hn-B
Length = 906
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 407 REIFKRLGNILYSIWDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALP 466
R I RL +L I +DP +N+ + F D+ F+E + + + + ++L
Sbjct: 297 RGIVDRLNKVLVCI---SDPNININIYKNKFKDKYKFVEDSEGKYSIDVESFDKLYKSLM 353
Query: 467 LASQEASGAIEAYHVKLKTKLFDDS 491
E + A E Y +K + F DS
Sbjct: 354 FGFTETNIA-ENYKIKTRASYFSDS 377
>pdb|2C8J|A Chain A, Crystal Structure Of Ferrochelatase Hemh-1 From Bacillus
Anthracis, Str. Ames
pdb|2C8J|B Chain B, Crystal Structure Of Ferrochelatase Hemh-1 From Bacillus
Anthracis, Str. Ames
Length = 311
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 22/134 (16%)
Query: 175 AKKIPYICNEIQQQTMSMIYLGIP------EESVLEKHIEGIQRYCG-------SDAKVN 221
AKK+ NE+Q + +YLG+ E++V E H +GIQ S V
Sbjct: 63 AKKLEKRLNEVQDEVEYHMYLGLKHIEPFIEDAVKEMHNDGIQDAIALVLAPHYSTFSVK 122
Query: 222 SL---ASQYVQKLGMIIRRSTHELD--LDDQASIRLWVDRNKKSIFFYQDSSETDPFILG 276
S A + +KLG + + H +D + I+ WVD KSI+ +E + +L
Sbjct: 123 SYVGRAQEEAEKLGNL---TIHGIDSWYKEPKFIQYWVDA-VKSIYSGMSDAEREKAVLI 178
Query: 277 IQTEWQLQQMIRFG 290
+ +++I G
Sbjct: 179 VSAHSLPEKIIAMG 192
>pdb|3SIB|A Chain A, Crystal Structure Of Ure3-Binding Protein, Wild-Type
Length = 220
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 59/145 (40%), Gaps = 26/145 (17%)
Query: 430 LEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYHVKLKTKLFD 489
+ + DF +F E+ +LA L M + SG +E + +
Sbjct: 93 MRIFDTDFNGHISFYEFMAMYKFMELAYNLFVMN-----DRNRSGTLEPHEI-------- 139
Query: 490 DSHLGALQRVDWVSSQKDSSLTHLVWNPGSEFAFCD-------CAWSMQGNICKHVVKVN 542
L ALQ++ + +Q+ S L H ++ G AFCD CA++ Q ++ +N
Sbjct: 140 ---LPALQQLGFYINQRTSLLLHRLFARG--MAFCDLNCWIAICAFAAQTRSAYQMIFMN 194
Query: 543 MICANNEGYQPSMSFQSLREVLMNL 567
+ + P M F +V+ +L
Sbjct: 195 PYYGPMKPFNP-MEFGKFLDVVTSL 218
>pdb|1FNT|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|C Chain C, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|Q Chain Q, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|C Chain C, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|Q Chain Q, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|C Chain C, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|Q Chain Q, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|C Chain C, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|Q Chain Q, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|C Chain C, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|Q Chain Q, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|D Chain D, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|D Chain D, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|C Chain C, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|Q Chain Q, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|C Chain C, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|Q Chain Q, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|C Chain C, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|Q Chain Q, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 254
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 31/64 (48%)
Query: 45 ARVDSFIIGECSNVECPTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGG 104
+++DS ++ S + +R IE+ R ++ +D +EY + + + Y + G
Sbjct: 65 SKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSG 124
Query: 105 GVLP 108
GV P
Sbjct: 125 GVRP 128
>pdb|1VSY|D Chain D, Proteasome Activator Complex
pdb|1VSY|R Chain R, Proteasome Activator Complex
pdb|3L5Q|I Chain I, Proteasome Activator Complex
pdb|3L5Q|U Chain U, Proteasome Activator Complex
Length = 227
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 31/64 (48%)
Query: 45 ARVDSFIIGECSNVECPTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGG 104
+++DS ++ S + +R IE+ R ++ +D +EY + + + Y + G
Sbjct: 49 SKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSG 108
Query: 105 GVLP 108
GV P
Sbjct: 109 GVRP 112
>pdb|1G0U|C Chain C, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|Q Chain Q, A Gated Channel Into The Proteasome Core Particle
pdb|3MG6|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 243
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 31/64 (48%)
Query: 45 ARVDSFIIGECSNVECPTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGG 104
+++DS ++ S + +R IE+ R ++ +D +EY + + + Y + G
Sbjct: 65 SKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSG 124
Query: 105 GVLP 108
GV P
Sbjct: 125 GVRP 128
>pdb|1RYP|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|C Chain C, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|Q Chain Q, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|C Chain C, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|X Chain X, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|C Chain C, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|Q Chain Q, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|C Chain C, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|Q Chain Q, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|C Chain C, Proteasome Inhibition By Fellutamide B
pdb|3D29|Q Chain Q, Proteasome Inhibition By Fellutamide B
pdb|3E47|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|C Chain C, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|Q Chain Q, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|C Chain C, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|Q Chain Q, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|C Chain C, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|Q Chain Q, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|C Chain C, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|Q Chain Q, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|C Chain C, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|Q Chain Q, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|C Chain C, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|Q Chain Q, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|C Chain C, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|Q Chain Q, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|C Chain C, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|Q Chain Q, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDI|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|C Chain C, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|Q Chain Q, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|C Chain C, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|Q Chain Q, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|C Chain C, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|Q Chain Q, 20s Yeast Proteasome In Complex With Glidobactin
Length = 241
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 31/64 (48%)
Query: 45 ARVDSFIIGECSNVECPTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGG 104
+++DS ++ S + +R IE+ R ++ +D +EY + + + Y + G
Sbjct: 63 SKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSG 122
Query: 105 GVLP 108
GV P
Sbjct: 123 GVRP 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,000,736
Number of Sequences: 62578
Number of extensions: 762111
Number of successful extensions: 1682
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1677
Number of HSP's gapped (non-prelim): 14
length of query: 656
length of database: 14,973,337
effective HSP length: 105
effective length of query: 551
effective length of database: 8,402,647
effective search space: 4629858497
effective search space used: 4629858497
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)