BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006219
         (656 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9Y758|CP52M_DEBHN Cytochrome P450 52A13 OS=Debaryomyces hansenii GN=CYP52A13 PE=2
           SV=1
          Length = 519

 Score = 36.2 bits (82), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 8/89 (8%)

Query: 4   VESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGE------CSN 57
           V SL D  + DPP EDF         F TA+ +  +    Y ++  FI+        C  
Sbjct: 206 VYSLKDAAINDPPTEDFDGRSSFANSFNTAQTY--LGTRAYLQMFYFIVNNSDFRKCCKQ 263

Query: 58  VECPTRFHIERGRKRSRGSLKEYKDDEYL 86
           V   TRF++++G   +   L++  ++ Y+
Sbjct: 264 VHDFTRFYVQKGLDMTPEELEKKSENGYV 292


>sp|A2QCV4|NCB5R_ASPNC NADH-cytochrome b5 reductase 1 OS=Aspergillus niger (strain CBS
           513.88 / FGSC A1513) GN=cbr1 PE=3 SV=1
          Length = 305

 Score = 34.7 bits (78), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 10/108 (9%)

Query: 533 NICKHVVKVNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHN----M 588
           N+C+H+    MI A   G  P   +Q ++ ++ N      +D+ ++DL  A  +     M
Sbjct: 163 NMCRHI---GMI-AGGTGITPM--YQIIKAIIRNRPRNGGNDTTQVDLIFANVNPDDILM 216

Query: 589 LDQIKQLVELSSSDDIGAVVNNLPLKWVSKKGRTSVGIPSSTLALPSS 636
            D+++QL +      I  V+NN P  W    G  +  +    L  PSS
Sbjct: 217 KDELEQLAKEDDGFRIYYVLNNPPEGWTGGVGFVTPDMIKERLPAPSS 264


>sp|A4SSY1|RPOA_AERS4 DNA-directed RNA polymerase subunit alpha OS=Aeromonas salmonicida
           (strain A449) GN=rpoA PE=3 SV=1
          Length = 329

 Score = 33.9 bits (76), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 2   DIVESLFDIQVQDPPEEDFSSIDLTWTKFGTA-------EHHDEVALIPYARVDSFIIGE 54
           DI+E L +++      E    + L+ TK GT         H DEV ++    V   + G 
Sbjct: 77  DILEILLNLKGIAVKLEGKDEVTLSLTKSGTGPVTAGDITHGDEVEIVNPEHVICHLTG- 135

Query: 55  CSNVECPTRFHIERGRKRSRGSLKEYKDDE 84
            +N E   R  ++RGR     S + + DDE
Sbjct: 136 -ANAEISMRLKVQRGRGYVPASARVHNDDE 164


>sp|A0KF45|RPOA_AERHH DNA-directed RNA polymerase subunit alpha OS=Aeromonas hydrophila
           subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=rpoA
           PE=3 SV=1
          Length = 329

 Score = 33.9 bits (76), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 2   DIVESLFDIQVQDPPEEDFSSIDLTWTKFGTA-------EHHDEVALIPYARVDSFIIGE 54
           DI+E L +++      E    + L+ TK GT         H DEV ++    V   + G 
Sbjct: 77  DILEILLNLKGIAVKLEGKDEVTLSLTKSGTGPVTAGDITHGDEVEIVNPEHVICHLTG- 135

Query: 55  CSNVECPTRFHIERGRKRSRGSLKEYKDDE 84
            +N E   R  ++RGR     S + + DDE
Sbjct: 136 -ANAEISMRLKVQRGRGYVPASARVHNDDE 164


>sp|B1HXY7|SYL_LYSSC Leucine--tRNA ligase OS=Lysinibacillus sphaericus (strain C3-41)
           GN=leuS PE=3 SV=1
          Length = 805

 Score = 33.5 bits (75), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 3/95 (3%)

Query: 432 VLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYHVK---LKTKLF 488
           + IQ +    A+++    +W P L   L+    +   S+     +E   +K   LK   +
Sbjct: 138 IFIQLYKKGLAYVDEVAVNWCPALGTVLANEEVIDGKSERGGHPVERRPMKQWMLKITAY 197

Query: 489 DDSHLGALQRVDWVSSQKDSSLTHLVWNPGSEFAF 523
            D  +  L+ VDW  S KD     +  + G+E  F
Sbjct: 198 ADRLIDDLEEVDWPESIKDMQRNWIGRSEGAEVTF 232


>sp|Q9K7S8|SYL_BACHD Leucine--tRNA ligase OS=Bacillus halodurans (strain ATCC BAA-125 /
           DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=leuS PE=3
           SV=1
          Length = 806

 Score = 33.1 bits (74), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 3/96 (3%)

Query: 432 VLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYHVK---LKTKLF 488
           + IQ +    A+I+    +W P L   L+    +   S+     +E   +K   LK   +
Sbjct: 138 IFIQLYNKGLAYIDEVAVNWCPALGTVLANEEVIDGKSERGGHPVERRPMKQWMLKITEY 197

Query: 489 DDSHLGALQRVDWVSSQKDSSLTHLVWNPGSEFAFC 524
            D  L  L+ +DW  S KD     +  + G+E  F 
Sbjct: 198 ADRLLEDLEELDWPESIKDMQRNWIGRSEGAEVTFS 233


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.136    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 243,497,147
Number of Sequences: 539616
Number of extensions: 9921843
Number of successful extensions: 21169
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 21165
Number of HSP's gapped (non-prelim): 13
length of query: 656
length of database: 191,569,459
effective HSP length: 124
effective length of query: 532
effective length of database: 124,657,075
effective search space: 66317563900
effective search space used: 66317563900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)