Query 006219
Match_columns 656
No_of_seqs 238 out of 411
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 19:11:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006219.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006219hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kks_A Integrase, IN; beta-str 78.7 6.1 0.00021 34.9 8.0 65 294-372 4-68 (152)
2 1c0m_A Protein (integrase); HI 72.6 13 0.00043 36.4 9.1 70 294-372 12-81 (238)
3 1cxq_A Avian sarcoma virus int 72.2 14 0.00048 33.3 8.7 70 294-372 13-82 (162)
4 2ayd_A WRKY transcription fact 64.1 19 0.00065 29.5 6.7 29 127-156 43-71 (76)
5 3l3u_A POL polyprotein; DNA in 58.7 32 0.0011 30.7 8.3 65 294-372 11-75 (163)
6 1bco_A MUA domain II, bacterio 52.1 28 0.00095 35.7 7.4 72 293-371 17-96 (327)
7 3hph_A Integrase, IN; protein- 50.7 50 0.0017 31.2 8.6 65 294-372 62-126 (219)
8 1wj2_A Probable WRKY transcrip 50.2 36 0.0012 28.0 6.1 29 127-156 46-74 (78)
9 1tc3_C Protein (TC3 transposas 46.4 41 0.0014 23.1 5.6 42 180-236 5-46 (51)
10 2x78_A Integrase; viral protei 36.0 83 0.0028 28.9 7.4 69 293-371 14-83 (200)
11 2kw0_A CCMH protein; oxidoredu 29.8 33 0.0011 29.0 2.9 32 181-215 41-72 (90)
12 2hl7_A Cytochrome C-type bioge 28.2 36 0.0012 28.3 2.9 32 181-215 44-75 (84)
13 3av9_A Integrase, IN; protein- 24.4 1.8E+02 0.0062 26.4 7.5 66 293-372 30-95 (183)
14 3f9k_A Integrase; protein-prot 22.0 1.5E+02 0.0053 27.5 6.6 65 294-372 61-125 (210)
15 1g2y_A Hepatocyte nuclear fact 21.7 63 0.0022 21.8 2.5 26 180-205 4-29 (32)
16 3hot_A Transposable element ma 20.1 3E+02 0.01 27.5 8.8 59 309-370 190-255 (345)
No 1
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=78.68 E-value=6.1 Score=34.87 Aligned_cols=65 Identities=15% Similarity=0.123 Sum_probs=45.7
Q ss_pred EEEEeccccccccCCceEEEEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHHhccCCCcceEEEEEcCchhhhhH
Q 006219 294 LIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEIDP 372 (656)
Q Consensus 294 vv~iDsT~~tnky~~pL~tl~v~d~~g~~~PvA~~i~~~et~e~~~~~L~~l~~~~~~~~p~~~P~~fmtD~d~A~~~A 372 (656)
++.+|.|+..+ .+.++++|.+-+.+ +++.+. +++.+.+..+|..++... | |+.|.+|....+.+.
T Consensus 4 ~w~~D~t~~~~-----~y~~~~iD~~sr~~-~~~~~~-~~~~~~~~~~l~~~~~~~----g---p~~i~sDnG~~f~s~ 68 (152)
T 3kks_A 4 LWQMDNTHWNK-----TIIWVAVETNSGLV-EAQVIP-EETALQVALCILQLIQRY----T---VLHLHSDNGPCFTAH 68 (152)
T ss_dssp EEEEEEEEETT-----EEEEEEEETTTCCE-EEEEES-SSCHHHHHHHHHHHHHHS----C---CSEEEECSCHHHHSH
T ss_pred EEEEeeeeeCC-----EEEEEEEEcCCCcE-EEEEeC-CcCHHHHHHHHHHHHHHh----C---CcEEecCCchHhhHH
Confidence 79999998743 27788889876655 677665 667776666665444332 2 889999999877654
No 2
>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A
Probab=72.62 E-value=13 Score=36.35 Aligned_cols=70 Identities=9% Similarity=-0.014 Sum_probs=50.1
Q ss_pred EEEEeccccccccCCceEEEEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHHhccCCCcceEEEEEcCchhhhhH
Q 006219 294 LIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEIDP 372 (656)
Q Consensus 294 vv~iDsT~~tnky~~pL~tl~v~d~~g~~~PvA~~i~~~et~e~~~~~L~~l~~~~~~~~p~~~P~~fmtD~d~A~~~A 372 (656)
++.+|.|+.....+. .+.++++|.+-+ ..+++.+. +.+.+.+..+|..++...+ .|..|.+|....+.+.
T Consensus 12 ~w~~D~~~~~~~~g~-~yl~~~iD~~Sr-~i~~~~~~-~~~~~~v~~~l~~~~~~~g------~p~~i~sDnG~~f~s~ 81 (238)
T 1c0m_A 12 IWQTDFTLEPRMAPR-SWLAVTVDTASS-AIVVTQHG-RVTSVAVQHHWATAIAVLG------RPKAIKTDNGSCFTSK 81 (238)
T ss_dssp EEEEEEEECGGGCSS-CEEEEEEETTTC-CEEEEEES-SCCHHHHHHHHHHHHHHHC------CCSEEEECSCHHHHSH
T ss_pred EEEEeeccccccCCC-EEEEEEEECCCC-CEEEEEcc-CCCHHHHHHHHHHHHHHhC------CCcEEEECCCCccccH
Confidence 899999986544443 566777888644 45788876 7888877777766665543 3679999999877554
No 3
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=72.17 E-value=14 Score=33.34 Aligned_cols=70 Identities=9% Similarity=-0.013 Sum_probs=49.0
Q ss_pred EEEEeccccccccCCceEEEEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHHhccCCCcceEEEEEcCchhhhhH
Q 006219 294 LIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEIDP 372 (656)
Q Consensus 294 vv~iDsT~~tnky~~pL~tl~v~d~~g~~~PvA~~i~~~et~e~~~~~L~~l~~~~~~~~p~~~P~~fmtD~d~A~~~A 372 (656)
++.+|.|+-....+. .+.++++|.+-+. .+++.+. +.+.+.+..+|..++...+ .|..|.+|....+.+.
T Consensus 13 ~~~~D~~~~~~~~g~-~yl~~~iD~~Sr~-i~~~~~~-~~~~~~v~~~l~~~~~~~g------~p~~i~sDnG~~f~s~ 82 (162)
T 1cxq_A 13 IWQTDFTLEPRMAPR-SWLAVTVDTASSA-IVVTQHG-RVTSVAAQHHWATAIAVLG------RPKAIKTDNGSCFTSK 82 (162)
T ss_dssp EEEEEEEECGGGTTS-CEEEEEEETTTCC-EEEEEES-SCCHHHHHHHHHHHHHHHC------CCSEEECCSCHHHHSH
T ss_pred EEEeeeeecccCCCC-EEEEEEEEcCCCe-EEEEECC-CccHHHHHHHHHHHHHHHC------CCeEEEeCCchhhhhH
Confidence 899999986544443 5667788887554 4777776 6777776666666555542 3679999999877653
No 4
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=64.08 E-value=19 Score=29.49 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=24.4
Q ss_pred cCceeEEEEEEeecCCcEEEEEEecccccC
Q 006219 127 RGCTCHFVVKRLYARPSLALLIYNDRRHVN 156 (656)
Q Consensus 127 ~GC~c~~~Vkr~~~~~~v~v~i~~~~~H~~ 156 (656)
.||+++=.|-+...++.+.+++|. .+|+|
T Consensus 43 ~gC~a~K~Ver~~~d~~~~~~tY~-G~H~H 71 (76)
T 2ayd_A 43 PGCPVKKHVERSSHDTKLLITTYE-GKHDH 71 (76)
T ss_dssp TTCCCEEEEEECSSSTTEEEEEEE-SCCSS
T ss_pred CCCCceeeEEEECCCCCEEEEEEc-cCcCC
Confidence 599999999998778898888888 56865
No 5
>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...
Probab=58.70 E-value=32 Score=30.71 Aligned_cols=65 Identities=12% Similarity=0.087 Sum_probs=45.6
Q ss_pred EEEEeccccccccCCceEEEEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHHhccCCCcceEEEEEcCchhhhhH
Q 006219 294 LIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEIDP 372 (656)
Q Consensus 294 vv~iDsT~~tnky~~pL~tl~v~d~~g~~~PvA~~i~~~et~e~~~~~L~~l~~~~~~~~p~~~P~~fmtD~d~A~~~A 372 (656)
++.+|.|+.-+ .|.++++|.+-+.+ +++.+. +.+.+.+..+|..++... .++.|.+|....+.+.
T Consensus 11 ~w~~D~t~~~g-----~y~~~~iD~~sr~~-~~~~~~-~~~~~~~~~~l~~~~~~~-------~~~~i~sD~G~~f~s~ 75 (163)
T 3l3u_A 11 IWQLDCTHLEG-----KVILVAVHVASGYI-EAEVIP-AETGQETAYFLLKLAGRW-------PVKTVHTDNGSNFTST 75 (163)
T ss_dssp EEEEEEEEETT-----EEEEEEEETTTCCE-EEEEES-SCCHHHHHHHHHHHHHHS-------CCCEEEECCCGGGGSH
T ss_pred EEEEEecccCC-----cEEEEEEecCCCcE-EEEEeC-CCcHHHHHHHHHHHHHHc-------CCcEEeecChHhhhhH
Confidence 89999999743 36888889876655 777764 557776666665544443 2468999998877654
No 6
>1bco_A MUA domain II, bacteriophage MU transposase; polynucleotidyl transferase, DNA binding, endonuclease, integrase; 2.40A {Enterobacteria phage MU} SCOP: b.48.1.1 c.55.3.3 PDB: 1bcm_A
Probab=52.12 E-value=28 Score=35.73 Aligned_cols=72 Identities=13% Similarity=0.049 Sum_probs=49.7
Q ss_pred eEEEEeccccccc----cCC--ceEEEEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHHhccCCCcceE--EEEEc
Q 006219 293 SLIAADSTFGIKR----LKY--PLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKIS--GFLID 364 (656)
Q Consensus 293 ~vv~iDsT~~tnk----y~~--pL~tl~v~d~~g~~~PvA~~i~~~et~e~~~~~L~~l~~~~~~~~p~~~P~--~fmtD 364 (656)
.++.+|.|+---. .+- -.+..+++|.+-+ ..+||.+...++.+.+..+|...+...+ .|. .|.+|
T Consensus 17 ~~w~~D~t~~d~~~~~~~g~~~r~~l~~~iD~~SR-~ivg~~~~~~~~~~~v~~aL~~a~~~~G------~P~~~~i~sD 89 (327)
T 1bco_A 17 QWINGDGYLHNVFVRWFNGDVIRPKTWFWQDVKTR-KILGWRCDVSENIDSIRLSFMDVVTRYG------IPEDFHITID 89 (327)
T ss_dssp TEEEEEEEECSBCEECTTSCEECCEEEEEEETTTC-CEEEEEEESSCCHHHHHHHHHHHHHHHC------EESSCEEECC
T ss_pred cEEEecCCEEEEEEECCCCccceeEEEEEEECCCC-cEEEEEEECCCCHHHHHHHHHHHHHhcC------CCCCcEEEee
Confidence 3899999853211 121 3466777888654 4599999999999988777766655442 588 99999
Q ss_pred Cchhhhh
Q 006219 365 DAAAEID 371 (656)
Q Consensus 365 ~d~A~~~ 371 (656)
.-..+.+
T Consensus 90 nG~~f~s 96 (327)
T 1bco_A 90 NTRGAAN 96 (327)
T ss_dssp CTTSTTT
T ss_pred Cchhhcc
Confidence 9865543
No 7
>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A
Probab=50.68 E-value=50 Score=31.21 Aligned_cols=65 Identities=11% Similarity=0.013 Sum_probs=45.2
Q ss_pred EEEEeccccccccCCceEEEEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHHhccCCCcceEEEEEcCchhhhhH
Q 006219 294 LIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEIDP 372 (656)
Q Consensus 294 vv~iDsT~~tnky~~pL~tl~v~d~~g~~~PvA~~i~~~et~e~~~~~L~~l~~~~~~~~p~~~P~~fmtD~d~A~~~A 372 (656)
++.+|.|+..++ +.++++|.+-+.+ +++.+ .+.+...+..+|..++... | |+.|.+|....+.++
T Consensus 62 ~w~~D~t~~~~~-----y~~~~iD~~Sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~----g---p~~i~sDnG~~F~s~ 126 (219)
T 3hph_A 62 HWQVDYTHYEDK-----IILVWVETNSGLI-YAERV-KGETGQEFRVQTMKWYAMF----A---PKSLQSDNGPAFVAE 126 (219)
T ss_dssp EEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SCCCHHHHHHHHHHHHHHH----C---CCEEEECCCHHHHSH
T ss_pred eEEEEEecCCCE-----EEEEEEeCCCCcE-EEEEe-CCCCHHHHHHHHHHHHHHh----C---CcEEEeCCCchhhhH
Confidence 788999865432 6788889876665 66665 5566666666665544443 2 779999999877654
No 8
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=50.16 E-value=36 Score=28.01 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=24.4
Q ss_pred cCceeEEEEEEeecCCcEEEEEEecccccC
Q 006219 127 RGCTCHFVVKRLYARPSLALLIYNDRRHVN 156 (656)
Q Consensus 127 ~GC~c~~~Vkr~~~~~~v~v~i~~~~~H~~ 156 (656)
.||+++=.|-+...++.+.+++|. .+|+|
T Consensus 46 ~gC~a~K~Ver~~~d~~~~~~tY~-G~H~H 74 (78)
T 1wj2_A 46 PGCGVRKHVERAATDPKAVVTTYE-GKHNH 74 (78)
T ss_dssp SSCEEEEEEEEETTTTSEEEEEEE-SCCSS
T ss_pred CCCCcEeeEEEEcCCCCEEEEEEe-eEcCC
Confidence 599999999998788888888888 56865
No 9
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=46.39 E-value=41 Score=23.08 Aligned_cols=42 Identities=14% Similarity=0.035 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhhccCCCCccCCCcHHHHHHHHHHHh
Q 006219 180 YICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIR 236 (656)
Q Consensus 180 rIs~e~r~~I~~ll~~Gi~p~~Il~~ire~~~~~~g~~~r~~llT~kDV~Ni~~~~~ 236 (656)
.++++++..|..+...|++..+|-.. + .++..-|++....++
T Consensus 5 ~l~~~~~~~i~~~~~~g~s~~~IA~~----l-----------gis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLNVSLHEMSRK----I-----------SRSRHCIRVYLKDPV 46 (51)
T ss_dssp CCCHHHHHHHHHHHHTTCCHHHHHHH----H-----------TCCHHHHHHHHHCST
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHH----H-----------CcCHHHHHHHHhhHH
Confidence 47899999999999999999888543 2 256767777665443
No 10
>2x78_A Integrase; viral protein, DNA-directed DNA polyme nucleotidyltransferase, DNA integration, aspartyl protease, recombination, transferase; 2.00A {Human spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A
Probab=35.98 E-value=83 Score=28.94 Aligned_cols=69 Identities=14% Similarity=-0.032 Sum_probs=43.5
Q ss_pred eEEEEec-cccccccCCceEEEEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHHhccCCCcceEEEEEcCchhhhh
Q 006219 293 SLIAADS-TFGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEID 371 (656)
Q Consensus 293 ~vv~iDs-T~~tnky~~pL~tl~v~d~~g~~~PvA~~i~~~et~e~~~~~L~~l~~~~~~~~p~~~P~~fmtD~d~A~~~ 371 (656)
.++++|- ++-....+ ..+.++++|.+-+. .+++.+ .+.+.+.+..+|..++ .. -.|+.|.+|....+.+
T Consensus 14 ~~~~~D~~~~~~~~~g-~~y~~~~iD~~Sr~-~~~~~~-~~~~~~~~~~~l~~~~---~~----g~p~~i~sDnG~~f~s 83 (200)
T 2x78_A 14 DKFFIDYIGPLPPSQG-YLYVLVVVDGMTGF-TWLYPT-KAPSTSATVKSLNVLT---SI----AIPRVIHSDQGAAFTS 83 (200)
T ss_dssp SEEEEEEECCCSCBTT-BCEEEEEEETTTCC-EEEEEE-SSSCHHHHHHHHHHHT---TT----CCCSEEEECSCHHHHS
T ss_pred cEEEEEEeCCCccCCC-CeEEEEEEeCCCCc-EEEEEC-CCCCHHHHHHHHHHHH---Hh----CCCcEEEecCCcceeh
Confidence 3899997 44332333 56778888886444 467776 6666666555543332 21 2578999999977655
No 11
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=29.80 E-value=33 Score=29.01 Aligned_cols=32 Identities=16% Similarity=0.444 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHhhhhccC
Q 006219 181 ICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCG 215 (656)
Q Consensus 181 Is~e~r~~I~~ll~~Gi~p~~Il~~ire~~~~~~g 215 (656)
|..++|.+|.+++..|-+..+|++.+. .+||.
T Consensus 41 iA~dlR~~Vre~l~~G~Sd~eI~~~mv---~RYGd 72 (90)
T 2kw0_A 41 IATDLRQKVYELMQEGKSKKEIVDYMV---ARYGN 72 (90)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHH---HHHTT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHH---HhcCC
Confidence 778999999999999999999988763 45553
No 12
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=28.20 E-value=36 Score=28.33 Aligned_cols=32 Identities=16% Similarity=0.399 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHhhhhccC
Q 006219 181 ICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCG 215 (656)
Q Consensus 181 Is~e~r~~I~~ll~~Gi~p~~Il~~ire~~~~~~g 215 (656)
|..++|.+|.+++..|-+..+|++.+. .+||.
T Consensus 44 iA~dlR~~V~~~l~~G~sd~eI~~~~v---~RYG~ 75 (84)
T 2hl7_A 44 IAADLRKQIYGQLQQGKSDGEIVDYMV---ARYGD 75 (84)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHH---HHHTT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHH---HhcCC
Confidence 678999999999999999999988763 45553
No 13
>3av9_A Integrase, IN; protein-protein interactions, HIV, recombination-inhibitor C; 1.70A {Human immunodeficiency virus type 1} PDB: 3ava_A 3avb_A 3avc_A 3avg_A 3avh_A 3avi_A 3avj_A 3avk_A 3avl_A 3avm_A 3avn_A 3nf6_A* 3nf7_A* 3nf8_A* 3nf9_A* 3nfa_A* 3avf_A
Probab=24.36 E-value=1.8e+02 Score=26.38 Aligned_cols=66 Identities=12% Similarity=0.103 Sum_probs=40.3
Q ss_pred eEEEEeccccccccCCceEEEEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHHhccCCCcceEEEEEcCchhhhhH
Q 006219 293 SLIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEIDP 372 (656)
Q Consensus 293 ~vv~iDsT~~tnky~~pL~tl~v~d~~g~~~PvA~~i~~~et~e~~~~~L~~l~~~~~~~~p~~~P~~fmtD~d~A~~~A 372 (656)
.++.+|.|+...+ +.++++|.+-+.+ +++.+.+ .+...+..++..+.... .++.|.+|....+.+.
T Consensus 30 ~~w~~D~~~~~g~-----~~l~~vD~~Sr~~-~~~~~~~-~~~~~~~~~~~~~~~~~-------~~~~i~sDnG~ef~s~ 95 (183)
T 3av9_A 30 GIWQLDCTHLEGK-----VILVAVHVASGYI-EAEVIPA-ETGQETAYFLLKLAGRW-------PVKTVHTDNGSNFTST 95 (183)
T ss_dssp TEEEEEEEEETTE-----EEEEEEETTTTEE-EEEEESS-CCHHHHHHHHHHHHHHS-------CCCEEECSSHHHHHCH
T ss_pred CEEEEeccccCCc-----EEEEEEECCCCCE-EEEEeCC-ccchHHHHHHHHHHHHc-------CCcEEEecCchhcchH
Confidence 3899999987222 2344558765555 7776654 55555444444333322 2478999998877543
No 14
>3f9k_A Integrase; protein-protein complex, AIDS, DNA integration, endonuclease magnesium, metal-binding, multifunctional enzyme; 3.20A {Human immunodeficiency virus type 2} PDB: 1e0e_A
Probab=21.99 E-value=1.5e+02 Score=27.52 Aligned_cols=65 Identities=15% Similarity=0.111 Sum_probs=42.2
Q ss_pred EEEEeccccccccCCceEEEEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHHhccCCCcceEEEEEcCchhhhhH
Q 006219 294 LIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEIDP 372 (656)
Q Consensus 294 vv~iDsT~~tnky~~pL~tl~v~d~~g~~~PvA~~i~~~et~e~~~~~L~~l~~~~~~~~p~~~P~~fmtD~d~A~~~A 372 (656)
++.+|.|+.-+ -+.++++|.+-+ +.+++.+.+ .+.+.+..+|..++... | +..|.+|....+.+.
T Consensus 61 ~w~~D~~~~~~-----~y~l~~vD~~sr-~~~~~~~~~-~~~~~~~~~l~~~~~~~----g---~~~i~sDnG~~F~s~ 125 (210)
T 3f9k_A 61 TWQMDCTHLEG-----KIIIVAVHVASG-FIEAEVIPQ-ESGRQTALFLLKLASRW----P---ITHLHTDNGANFTSQ 125 (210)
T ss_dssp EEEEEEEEETT-----EEEEEEEETTTT-EEEEEEESS-CCHHHHHHHHHHHHTTS----C---CSEEEECCCTTTSSH
T ss_pred eEeEeecccCC-----eEEEEEEEcCCC-cEEEEEeCC-cchHHHHHHHHHHHHHc----C---CCEEEeCCCchhhHH
Confidence 78999887643 357788888765 556666654 67776655554433222 2 235999999877654
No 15
>1g2y_A Hepatocyte nuclear factor 1-alpha; dimerization domain, four-helix bundle, transcription factor, selenomethionine; 1.00A {Synthetic} SCOP: a.34.2.1 PDB: 1g39_A 1f93_E 1g2z_A 1jb6_A 2gyp_A
Probab=21.67 E-value=63 Score=21.83 Aligned_cols=26 Identities=8% Similarity=0.245 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHH
Q 006219 180 YICNEIQQQTMSMIYLGIPEESVLEK 205 (656)
Q Consensus 180 rIs~e~r~~I~~ll~~Gi~p~~Il~~ 205 (656)
++|.-+++.+..|+.+|++.+..++-
T Consensus 4 kLs~LQ~eLL~aLL~SGlsKe~Liqa 29 (32)
T 1g2y_A 4 KLSQLQTEMLAALLESGLSKEALIQA 29 (32)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 57888999999999999999877653
No 16
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=20.14 E-value=3e+02 Score=27.47 Aligned_cols=59 Identities=12% Similarity=0.148 Sum_probs=38.7
Q ss_pred ceEEEEEEcCCCCeEEEEEEEec---CCChhhHHHHHHHHHHHHhccCCCc----ceEEEEEcCchhhh
Q 006219 309 PLCTLLVFDSRQHALPVAWVVTR---SSAKPDVTKWMKSLLDRARSIEPGW----KISGFLIDDAAAEI 370 (656)
Q Consensus 309 pL~tl~v~d~~g~~~PvA~~i~~---~et~e~~~~~L~~l~~~~~~~~p~~----~P~~fmtD~d~A~~ 370 (656)
.+....+.+..| .+++.++. .-+.+.|..+|..+...+....|.. .+-.|+.|.+..-.
T Consensus 190 ~~~v~~~~~~~g---~~~~~~~~~~~~~~~~~y~~~L~~~~~~~~~~~p~~~~~~~~~~~~~Dna~~h~ 255 (345)
T 3hot_A 190 KTMLCVWWDQSG---VIYYELLKPGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAPSHT 255 (345)
T ss_dssp EEEEEEEEESSS---EEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHSTTCC---CCCEEECCCCTTTT
T ss_pred cEEEEEEEcccC---ceeeEecCCCCcccHHHHHHHHHHHHHHHHHhchhhhcCCCceEEEECCCCccc
Confidence 445555666555 46676665 5678888888888777776555543 24478889876543
Done!