Query 006220
Match_columns 656
No_of_seqs 803 out of 3843
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 20:07:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006220.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006220hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0263 Transcription initiati 100.0 3E-102 7E-107 823.0 47.9 623 1-656 19-695 (707)
2 KOG0271 Notchless-like WD40 re 100.0 1.1E-43 2.5E-48 347.5 25.2 268 345-656 109-461 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 8.3E-42 1.8E-46 338.9 22.8 266 347-655 171-439 (459)
4 KOG0272 U4/U6 small nuclear ri 100.0 2.4E-41 5.1E-46 335.6 20.7 262 327-617 194-458 (459)
5 KOG0271 Notchless-like WD40 re 100.0 2.8E-40 6.1E-45 323.7 23.4 260 329-617 136-479 (480)
6 KOG0286 G-protein beta subunit 100.0 2.5E-37 5.5E-42 294.0 30.1 272 345-617 49-343 (343)
7 cd08044 TAF5_NTD2 TAF5_NTD2 is 100.0 1.3E-38 2.8E-43 285.7 13.7 132 64-195 1-132 (133)
8 PF04494 TFIID_90kDa: WD40 ass 100.0 2E-38 4.4E-43 287.4 14.0 133 59-191 7-142 (142)
9 KOG0279 G protein beta subunit 100.0 2.3E-35 4.9E-40 279.2 30.0 260 345-629 9-272 (315)
10 KOG0273 Beta-transducin family 100.0 1.7E-35 3.7E-40 297.4 28.2 249 351-629 235-492 (524)
11 KOG0315 G-protein beta subunit 100.0 8.4E-35 1.8E-39 270.9 30.6 271 327-626 17-295 (311)
12 KOG0284 Polyadenylation factor 100.0 3E-36 6.4E-41 298.0 17.1 244 351-623 96-341 (464)
13 KOG0279 G protein beta subunit 100.0 4.8E-34 1E-38 270.2 28.1 248 342-620 54-314 (315)
14 KOG0295 WD40 repeat-containing 100.0 1E-34 2.2E-39 283.7 22.5 255 346-628 103-373 (406)
15 KOG0263 Transcription initiati 100.0 1.2E-34 2.5E-39 308.9 24.8 208 343-578 443-650 (707)
16 KOG0265 U5 snRNP-specific prot 100.0 6.9E-34 1.5E-38 271.6 25.1 269 345-656 41-318 (338)
17 KOG0305 Anaphase promoting com 100.0 3E-34 6.5E-39 301.5 23.8 296 294-621 161-463 (484)
18 KOG0281 Beta-TrCP (transducin 100.0 2.6E-35 5.6E-40 285.3 14.3 260 350-655 196-458 (499)
19 KOG0285 Pleiotropic regulator 100.0 8.3E-34 1.8E-38 276.1 24.3 260 340-629 140-399 (460)
20 KOG0284 Polyadenylation factor 100.0 3.8E-35 8.3E-40 290.2 14.4 261 329-620 117-381 (464)
21 KOG0266 WD40 repeat-containing 100.0 4.8E-33 1E-37 303.7 32.3 253 351-629 159-419 (456)
22 cd00200 WD40 WD40 domain, foun 100.0 6.9E-32 1.5E-36 273.6 35.5 252 346-625 4-255 (289)
23 KOG0295 WD40 repeat-containing 100.0 1.5E-33 3.2E-38 275.5 21.8 260 331-618 131-405 (406)
24 KOG0282 mRNA splicing factor [ 100.0 3.4E-34 7.4E-39 289.3 16.5 251 339-617 202-503 (503)
25 KOG0316 Conserved WD40 repeat- 100.0 1.3E-32 2.7E-37 254.4 24.5 275 339-646 5-283 (307)
26 KOG0286 G-protein beta subunit 100.0 7E-32 1.5E-36 256.9 27.4 229 413-655 47-282 (343)
27 KOG0291 WD40-repeat-containing 100.0 1.4E-31 3.1E-36 282.2 32.5 262 339-628 294-559 (893)
28 KOG0266 WD40 repeat-containing 100.0 8.5E-32 1.9E-36 293.9 29.5 264 329-619 180-454 (456)
29 KOG0319 WD40-repeat-containing 100.0 3.5E-32 7.6E-37 286.8 23.3 259 340-622 354-622 (775)
30 KOG0291 WD40-repeat-containing 100.0 3.3E-31 7.2E-36 279.5 29.9 255 345-627 344-620 (893)
31 KOG0293 WD40 repeat-containing 100.0 6.4E-32 1.4E-36 267.4 21.7 258 338-621 211-515 (519)
32 KOG0273 Beta-transducin family 100.0 4.8E-31 1E-35 265.5 28.2 259 329-619 256-523 (524)
33 KOG0645 WD40 repeat protein [G 100.0 2.8E-30 6E-35 243.8 31.2 247 344-620 7-262 (312)
34 cd00200 WD40 WD40 domain, foun 100.0 3.1E-30 6.7E-35 261.5 34.2 260 329-617 30-289 (289)
35 KOG0283 WD40 repeat-containing 100.0 2.7E-31 5.8E-36 285.6 27.1 271 349-622 265-579 (712)
36 KOG0281 Beta-TrCP (transducin 100.0 1.2E-32 2.7E-37 266.8 13.9 260 324-624 210-482 (499)
37 PLN00181 protein SPA1-RELATED; 100.0 7.2E-30 1.6E-34 298.6 39.5 255 347-624 479-743 (793)
38 KOG0318 WD40 repeat stress pro 100.0 4.2E-30 9.1E-35 261.7 32.1 255 344-626 183-567 (603)
39 KOG0275 Conserved WD40 repeat- 100.0 2.4E-32 5.2E-37 262.4 12.6 250 348-617 210-507 (508)
40 KOG0296 Angio-associated migra 100.0 1E-29 2.2E-34 248.9 30.7 246 345-619 58-398 (399)
41 KOG0277 Peroxisomal targeting 100.0 5.1E-31 1.1E-35 246.5 20.6 261 331-618 39-308 (311)
42 KOG0276 Vesicle coat complex C 100.0 1.7E-30 3.7E-35 268.8 25.1 249 347-623 9-261 (794)
43 KOG0319 WD40-repeat-containing 100.0 1.6E-30 3.4E-35 274.4 25.2 254 346-628 318-586 (775)
44 KOG0645 WD40 repeat protein [G 100.0 2E-29 4.3E-34 238.0 28.7 260 328-619 35-311 (312)
45 PTZ00421 coronin; Provisional 100.0 3.7E-29 8E-34 272.5 35.1 287 352-654 21-324 (493)
46 KOG0285 Pleiotropic regulator 100.0 1.2E-30 2.6E-35 254.2 20.0 216 411-627 141-356 (460)
47 KOG0315 G-protein beta subunit 100.0 2.1E-29 4.6E-34 234.9 26.6 244 326-598 57-309 (311)
48 KOG0292 Vesicle coat complex C 100.0 3.7E-30 7.9E-35 275.1 23.9 250 350-627 8-288 (1202)
49 PLN00181 protein SPA1-RELATED; 100.0 9.4E-29 2E-33 289.2 37.0 240 349-618 530-792 (793)
50 KOG0292 Vesicle coat complex C 100.0 1.8E-29 3.9E-34 269.8 26.8 266 329-624 30-326 (1202)
51 KOG0265 U5 snRNP-specific prot 100.0 4.7E-29 1E-33 238.6 25.1 263 326-617 65-336 (338)
52 KOG0640 mRNA cleavage stimulat 100.0 2E-29 4.4E-34 241.4 22.0 264 344-618 105-425 (430)
53 KOG0643 Translation initiation 100.0 1.3E-28 2.9E-33 231.8 26.8 247 346-621 5-319 (327)
54 PTZ00420 coronin; Provisional 100.0 4.9E-28 1.1E-32 264.8 35.5 225 369-622 50-296 (568)
55 KOG0276 Vesicle coat complex C 100.0 2.7E-29 5.8E-34 260.0 23.9 265 328-622 33-301 (794)
56 KOG0313 Microtubule binding pr 100.0 1.7E-28 3.6E-33 241.4 25.5 264 328-620 123-419 (423)
57 KOG0313 Microtubule binding pr 100.0 1.8E-28 4E-33 241.1 25.1 260 349-655 103-398 (423)
58 KOG1407 WD40 repeat protein [F 100.0 5.4E-28 1.2E-32 227.1 24.7 268 347-645 16-284 (313)
59 KOG0318 WD40 repeat stress pro 100.0 2.9E-27 6.3E-32 241.1 32.1 251 346-624 54-355 (603)
60 KOG0282 mRNA splicing factor [ 100.0 2.1E-29 4.5E-34 254.8 15.0 214 411-625 204-468 (503)
61 KOG0274 Cdc4 and related F-box 100.0 1E-27 2.3E-32 261.4 29.2 263 328-627 226-490 (537)
62 KOG1446 Histone H3 (Lys4) meth 100.0 9.2E-27 2E-31 225.2 31.8 253 347-629 10-272 (311)
63 KOG0264 Nucleosome remodeling 100.0 1.1E-27 2.4E-32 241.3 24.6 263 340-620 113-405 (422)
64 KOG0973 Histone transcription 100.0 1.5E-27 3.3E-32 262.8 27.1 268 346-623 64-359 (942)
65 KOG0294 WD40 repeat-containing 100.0 2.5E-27 5.4E-32 228.2 24.5 246 344-623 36-285 (362)
66 KOG0310 Conserved WD40 repeat- 100.0 1.7E-27 3.6E-32 241.5 24.0 262 329-622 47-312 (487)
67 KOG0289 mRNA splicing factor [ 100.0 2.9E-27 6.2E-32 236.0 25.2 238 352-617 220-460 (506)
68 PTZ00421 coronin; Provisional 100.0 1.5E-26 3.2E-31 252.0 32.6 233 347-600 71-314 (493)
69 KOG0306 WD40-repeat-containing 100.0 3.2E-27 6.9E-32 249.4 26.2 265 329-624 393-669 (888)
70 KOG0274 Cdc4 and related F-box 100.0 3.6E-27 7.9E-32 257.2 27.7 243 350-629 207-451 (537)
71 KOG0299 U3 snoRNP-associated p 100.0 4.1E-27 9E-32 236.9 25.3 270 341-623 132-414 (479)
72 KOG0306 WD40-repeat-containing 100.0 6.2E-27 1.3E-31 247.3 27.2 254 342-627 364-630 (888)
73 KOG0277 Peroxisomal targeting 100.0 3E-27 6.6E-32 221.2 21.6 205 420-624 59-270 (311)
74 KOG0288 WD40 repeat protein Ti 100.0 2.9E-28 6.2E-33 242.0 15.3 263 337-629 161-427 (459)
75 KOG0316 Conserved WD40 repeat- 100.0 3.8E-27 8.2E-32 218.2 21.3 211 413-627 9-221 (307)
76 KOG0310 Conserved WD40 repeat- 100.0 3.8E-27 8.2E-32 239.0 22.6 247 348-625 23-274 (487)
77 KOG0278 Serine/threonine kinas 100.0 7E-28 1.5E-32 224.7 15.4 249 346-624 9-302 (334)
78 KOG0641 WD40 repeat protein [G 100.0 1.3E-25 2.9E-30 206.4 29.5 258 338-619 76-349 (350)
79 KOG0641 WD40 repeat protein [G 100.0 1.6E-25 3.5E-30 205.9 29.9 267 341-621 22-305 (350)
80 KOG0973 Histone transcription 100.0 1.1E-26 2.3E-31 256.1 25.7 268 346-629 7-322 (942)
81 KOG0288 WD40 repeat protein Ti 99.9 4.3E-27 9.3E-32 233.7 18.4 260 326-617 193-459 (459)
82 KOG0308 Conserved WD40 repeat- 99.9 4.7E-27 1E-31 244.9 18.8 240 361-622 35-288 (735)
83 KOG0647 mRNA export protein (c 99.9 7.1E-26 1.5E-30 217.0 24.9 261 351-656 27-303 (347)
84 KOG0296 Angio-associated migra 99.9 9.7E-26 2.1E-30 221.1 26.4 174 413-586 56-229 (399)
85 PTZ00420 coronin; Provisional 99.9 6E-25 1.3E-29 240.6 34.3 248 331-601 55-318 (568)
86 KOG0643 Translation initiation 99.9 7.7E-26 1.7E-30 213.2 23.3 210 416-626 5-227 (327)
87 KOG0268 Sof1-like rRNA process 99.9 4.9E-27 1.1E-31 229.6 14.5 248 347-625 62-351 (433)
88 KOG0772 Uncharacterized conser 99.9 8.3E-26 1.8E-30 229.7 22.7 279 339-617 155-485 (641)
89 KOG0289 mRNA splicing factor [ 99.9 3.6E-25 7.8E-30 221.1 24.3 247 344-618 254-505 (506)
90 KOG0300 WD40 repeat-containing 99.9 1.7E-25 3.6E-30 215.0 20.0 247 346-622 143-431 (481)
91 KOG0640 mRNA cleavage stimulat 99.9 1.4E-25 3.1E-30 215.1 18.5 215 413-627 104-343 (430)
92 KOG0301 Phospholipase A2-activ 99.9 6.2E-25 1.4E-29 230.8 23.9 254 331-623 36-292 (745)
93 KOG1332 Vesicle coat complex C 99.9 2.2E-25 4.8E-30 207.7 18.2 249 348-621 8-288 (299)
94 KOG0283 WD40 repeat-containing 99.9 6.2E-25 1.4E-29 236.7 22.6 210 416-628 261-541 (712)
95 KOG2445 Nuclear pore complex c 99.9 9.7E-24 2.1E-28 202.8 27.6 249 348-621 10-320 (361)
96 KOG1446 Histone H3 (Lys4) meth 99.9 2.1E-23 4.6E-28 202.0 30.0 259 329-620 35-304 (311)
97 KOG0301 Phospholipase A2-activ 99.9 1.6E-24 3.4E-29 227.7 23.6 241 345-620 8-250 (745)
98 KOG0267 Microtubule severing p 99.9 3.1E-26 6.7E-31 241.3 10.2 208 417-624 24-231 (825)
99 KOG0299 U3 snoRNP-associated p 99.9 1.6E-24 3.6E-29 218.3 22.2 239 349-618 200-455 (479)
100 KOG2096 WD40 repeat protein [G 99.9 5.5E-24 1.2E-28 205.0 24.3 272 346-620 81-403 (420)
101 KOG0293 WD40 repeat-containing 99.9 1.7E-24 3.7E-29 214.9 20.3 228 412-656 215-492 (519)
102 KOG1407 WD40 repeat protein [F 99.9 1.2E-23 2.6E-28 198.0 24.8 233 347-610 60-293 (313)
103 KOG0300 WD40 repeat-containing 99.9 2.6E-24 5.6E-29 206.9 20.7 288 331-622 171-479 (481)
104 KOG0646 WD40 repeat protein [G 99.9 3E-24 6.6E-29 216.8 22.3 208 420-628 80-316 (476)
105 KOG0305 Anaphase promoting com 99.9 8.6E-24 1.9E-28 222.7 26.2 238 354-624 180-424 (484)
106 KOG0267 Microtubule severing p 99.9 7E-26 1.5E-30 238.6 9.7 238 346-611 23-260 (825)
107 KOG0275 Conserved WD40 repeat- 99.9 4.1E-25 9E-30 212.8 14.0 203 418-620 210-424 (508)
108 KOG1036 Mitotic spindle checkp 99.9 3.4E-23 7.4E-28 199.6 26.0 241 351-625 13-268 (323)
109 KOG1274 WD40 repeat protein [G 99.9 2.3E-23 5E-28 225.4 27.4 244 348-620 10-263 (933)
110 KOG1408 WD40 repeat protein [F 99.9 4.3E-24 9.4E-29 224.0 21.0 245 348-620 456-714 (1080)
111 KOG0646 WD40 repeat protein [G 99.9 4.8E-24 1E-28 215.4 20.4 242 350-620 80-351 (476)
112 KOG0639 Transducin-like enhanc 99.9 4.4E-24 9.6E-29 216.2 19.6 259 346-630 414-674 (705)
113 KOG0278 Serine/threonine kinas 99.9 2.2E-24 4.8E-29 201.4 16.0 205 348-582 97-302 (334)
114 KOG0269 WD40 repeat-containing 99.9 1.8E-24 3.9E-29 229.8 16.1 244 354-622 90-343 (839)
115 KOG0264 Nucleosome remodeling 99.9 5.6E-23 1.2E-27 207.5 26.0 242 413-655 116-382 (422)
116 KOG0639 Transducin-like enhanc 99.9 3.3E-24 7.1E-29 217.2 17.0 260 330-618 440-703 (705)
117 KOG4283 Transcription-coupled 99.9 3.5E-23 7.6E-28 197.6 21.1 219 348-580 40-279 (397)
118 KOG1273 WD40 repeat protein [G 99.9 3.6E-23 7.7E-28 199.3 20.7 239 354-622 26-325 (405)
119 KOG0270 WD40 repeat-containing 99.9 2.9E-23 6.3E-28 208.5 20.8 263 355-625 177-455 (463)
120 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.1E-21 4.4E-26 200.6 35.2 262 330-625 11-285 (300)
121 KOG0302 Ribosome Assembly prot 99.9 4.4E-23 9.5E-28 203.1 20.2 208 415-623 145-382 (440)
122 KOG2048 WD40 repeat protein [G 99.9 8.9E-22 1.9E-26 206.9 30.8 245 350-623 24-279 (691)
123 KOG0772 Uncharacterized conser 99.9 2.5E-23 5.4E-28 211.8 18.3 213 413-625 159-400 (641)
124 KOG0302 Ribosome Assembly prot 99.9 1.2E-22 2.6E-27 200.0 21.8 256 348-616 148-435 (440)
125 KOG1539 WD repeat protein [Gen 99.9 2.2E-21 4.8E-26 207.8 31.5 270 329-627 181-614 (910)
126 KOG0308 Conserved WD40 repeat- 99.9 5.3E-23 1.1E-27 214.8 18.6 266 331-622 48-330 (735)
127 KOG0269 WD40 repeat-containing 99.9 4.2E-23 9.1E-28 219.4 17.4 251 351-623 39-300 (839)
128 KOG1408 WD40 repeat protein [F 99.9 4.6E-22 1E-26 208.9 24.2 312 329-655 345-692 (1080)
129 KOG4283 Transcription-coupled 99.9 2.1E-22 4.5E-27 192.3 18.9 209 417-626 39-283 (397)
130 KOG2055 WD40 repeat protein [G 99.9 7.3E-22 1.6E-26 199.1 23.8 265 350-656 212-492 (514)
131 KOG1539 WD repeat protein [Gen 99.9 1.5E-21 3.3E-26 209.1 26.1 198 422-621 449-650 (910)
132 KOG1332 Vesicle coat complex C 99.9 2.1E-22 4.5E-27 187.9 15.9 204 417-620 7-242 (299)
133 KOG1063 RNA polymerase II elon 99.9 8.6E-22 1.9E-26 207.2 21.3 291 330-621 169-650 (764)
134 KOG1036 Mitotic spindle checkp 99.9 4.2E-21 9E-26 185.2 23.7 232 345-609 48-294 (323)
135 KOG0647 mRNA export protein (c 99.9 4.1E-21 8.9E-26 184.5 22.4 250 327-608 47-312 (347)
136 KOG0294 WD40 repeat-containing 99.9 2.1E-20 4.5E-25 180.6 24.3 237 366-624 4-242 (362)
137 KOG2106 Uncharacterized conser 99.9 8E-20 1.7E-24 186.0 28.4 233 352-619 247-521 (626)
138 KOG4378 Nuclear protein COP1 [ 99.9 6.5E-21 1.4E-25 193.3 19.8 269 328-623 10-284 (673)
139 KOG0268 Sof1-like rRNA process 99.9 8E-22 1.7E-26 193.3 12.8 207 414-623 59-306 (433)
140 KOG2919 Guanine nucleotide-bin 99.9 3.5E-20 7.5E-25 179.4 23.7 252 353-620 51-328 (406)
141 KOG0307 Vesicle coat complex C 99.9 9.6E-22 2.1E-26 218.0 14.7 254 348-623 61-331 (1049)
142 KOG2096 WD40 repeat protein [G 99.9 1.3E-20 2.7E-25 182.0 20.0 204 416-620 81-309 (420)
143 KOG0650 WD40 repeat nucleolar 99.9 1.1E-20 2.4E-25 195.7 20.4 278 338-616 387-732 (733)
144 KOG2445 Nuclear pore complex c 99.9 5.7E-20 1.2E-24 177.0 23.4 238 417-655 9-297 (361)
145 KOG2055 WD40 repeat protein [G 99.9 1.3E-20 2.8E-25 190.1 19.8 267 325-619 230-512 (514)
146 KOG1274 WD40 repeat protein [G 99.9 5.3E-20 1.1E-24 199.6 25.5 233 350-616 55-297 (933)
147 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 8.5E-19 1.8E-23 181.0 33.2 231 363-625 1-243 (300)
148 KOG4328 WD40 protein [Function 99.9 3.7E-20 7.9E-25 186.8 21.6 255 347-626 182-457 (498)
149 KOG2106 Uncharacterized conser 99.9 2.5E-19 5.5E-24 182.4 27.0 311 326-655 263-605 (626)
150 KOG1063 RNA polymerase II elon 99.9 1.5E-19 3.3E-24 190.4 26.3 293 329-622 33-605 (764)
151 KOG0642 Cell-cycle nuclear pro 99.9 7.3E-21 1.6E-25 196.5 16.0 260 345-625 288-567 (577)
152 KOG0321 WD40 repeat-containing 99.9 4.1E-20 8.8E-25 193.0 20.8 254 344-623 93-395 (720)
153 COG2319 FOG: WD40 repeat [Gene 99.8 1.1E-17 2.5E-22 178.4 36.2 254 346-627 60-322 (466)
154 KOG0321 WD40 repeat-containing 99.8 1.4E-19 3E-24 189.1 20.4 268 362-652 63-379 (720)
155 KOG1009 Chromatin assembly com 99.8 8.1E-19 1.8E-23 174.9 24.5 256 350-624 12-377 (434)
156 KOG4378 Nuclear protein COP1 [ 99.8 1E-19 2.3E-24 184.6 18.4 241 331-601 58-305 (673)
157 KOG0303 Actin-binding protein 99.8 6.9E-19 1.5E-23 174.5 21.9 209 413-623 73-298 (472)
158 KOG1034 Transcriptional repres 99.8 2.6E-19 5.7E-24 173.8 18.1 241 349-619 87-383 (385)
159 KOG0270 WD40 repeat-containing 99.8 6.5E-19 1.4E-23 177.4 21.3 200 424-623 176-408 (463)
160 KOG0307 Vesicle coat complex C 99.8 7E-20 1.5E-24 203.3 13.9 207 421-627 64-292 (1049)
161 COG2319 FOG: WD40 repeat [Gene 99.8 8.8E-17 1.9E-21 171.6 35.9 266 329-622 86-362 (466)
162 KOG1007 WD repeat protein TSSC 99.8 1.9E-18 4.2E-23 165.0 19.9 254 346-620 58-362 (370)
163 KOG2048 WD40 repeat protein [G 99.8 8.2E-18 1.8E-22 177.3 26.3 264 325-620 42-320 (691)
164 KOG1587 Cytoplasmic dynein int 99.8 5.5E-18 1.2E-22 184.0 25.4 268 331-621 223-518 (555)
165 KOG1445 Tumor-specific antigen 99.8 1E-18 2.3E-23 181.7 18.3 117 508-624 630-755 (1012)
166 KOG0649 WD40 repeat protein [G 99.8 1.6E-17 3.5E-22 155.2 23.3 241 353-620 12-275 (325)
167 KOG1273 WD40 repeat protein [G 99.8 4.4E-18 9.6E-23 164.3 20.1 195 424-619 26-226 (405)
168 KOG1007 WD repeat protein TSSC 99.8 6.6E-18 1.4E-22 161.4 20.4 241 413-655 55-339 (370)
169 KOG1538 Uncharacterized conser 99.8 3E-17 6.5E-22 171.8 25.9 239 353-622 14-296 (1081)
170 KOG4328 WD40 protein [Function 99.8 1.9E-18 4.1E-23 174.5 16.4 207 413-619 178-399 (498)
171 KOG0322 G-protein beta subunit 99.8 2.1E-18 4.6E-23 162.9 15.3 249 340-618 3-322 (323)
172 KOG0290 Conserved WD40 repeat- 99.8 6.2E-17 1.3E-21 155.0 25.0 284 339-649 32-351 (364)
173 KOG1188 WD40 repeat protein [G 99.8 2.7E-18 5.8E-23 167.9 15.9 228 364-619 41-346 (376)
174 KOG0644 Uncharacterized conser 99.8 3.9E-19 8.5E-24 190.2 9.5 247 347-625 186-474 (1113)
175 KOG1034 Transcriptional repres 99.8 1E-17 2.2E-22 162.9 18.2 249 348-624 35-342 (385)
176 PRK11028 6-phosphogluconolacto 99.8 8.8E-16 1.9E-20 161.7 33.8 264 330-621 12-306 (330)
177 KOG2919 Guanine nucleotide-bin 99.8 1.2E-17 2.6E-22 162.0 16.8 232 352-610 105-361 (406)
178 KOG2110 Uncharacterized conser 99.8 3.9E-16 8.6E-21 154.4 27.6 236 352-622 6-251 (391)
179 KOG1523 Actin-related protein 99.8 7.7E-17 1.7E-21 156.5 20.0 239 346-610 5-269 (361)
180 KOG4227 WD40 repeat protein [G 99.7 1.5E-16 3.2E-21 157.4 20.6 289 346-656 51-367 (609)
181 KOG0303 Actin-binding protein 99.7 1.9E-16 4.2E-21 157.3 20.4 213 347-581 77-298 (472)
182 KOG1963 WD40 repeat protein [G 99.7 1.3E-15 2.8E-20 165.7 27.5 246 350-621 204-540 (792)
183 KOG0650 WD40 repeat nucleolar 99.7 2.1E-16 4.5E-21 164.3 19.9 211 412-625 391-643 (733)
184 KOG1445 Tumor-specific antigen 99.7 1.8E-16 3.9E-21 165.2 18.9 274 359-656 587-882 (1012)
185 KOG1009 Chromatin assembly com 99.7 2.5E-16 5.4E-21 157.3 18.3 232 420-656 12-292 (434)
186 PRK01742 tolB translocation pr 99.7 6.8E-16 1.5E-20 168.1 23.5 219 346-600 198-426 (429)
187 KOG0642 Cell-cycle nuclear pro 99.7 1.6E-16 3.5E-21 164.6 17.0 232 338-589 331-573 (577)
188 PRK01742 tolB translocation pr 99.7 5.1E-16 1.1E-20 169.1 22.1 195 415-619 197-401 (429)
189 KOG0290 Conserved WD40 repeat- 99.7 7.1E-16 1.5E-20 147.8 19.7 245 348-615 93-361 (364)
190 KOG0771 Prolactin regulatory e 99.7 1.8E-16 3.9E-21 159.5 15.7 197 425-622 148-357 (398)
191 KOG0644 Uncharacterized conser 99.7 1.3E-17 2.8E-22 178.7 7.0 212 413-628 182-435 (1113)
192 KOG1524 WD40 repeat-containing 99.7 4.6E-16 1E-20 159.7 17.8 185 416-616 99-283 (737)
193 KOG1523 Actin-related protein 99.7 1.5E-15 3.2E-20 147.6 19.4 203 420-622 9-239 (361)
194 KOG0649 WD40 repeat protein [G 99.7 2.3E-15 4.9E-20 140.9 18.9 200 422-627 11-243 (325)
195 KOG0771 Prolactin regulatory e 99.7 5.8E-16 1.3E-20 155.8 15.5 195 355-578 148-355 (398)
196 KOG2111 Uncharacterized conser 99.7 8E-14 1.7E-18 135.7 27.8 236 354-622 8-259 (346)
197 KOG1272 WD40-repeat-containing 99.7 1.9E-16 4.2E-21 160.3 9.9 231 353-618 131-361 (545)
198 KOG1517 Guanine nucleotide bin 99.7 1.6E-14 3.5E-19 158.8 25.0 244 353-622 1066-1336(1387)
199 KOG1517 Guanine nucleotide bin 99.7 4.4E-15 9.5E-20 163.2 20.5 251 352-622 1110-1384(1387)
200 KOG1310 WD40 repeat protein [G 99.7 8.3E-16 1.8E-20 158.2 14.1 213 346-585 45-311 (758)
201 KOG1587 Cytoplasmic dynein int 99.7 1.3E-14 2.8E-19 157.8 24.2 205 420-624 241-477 (555)
202 KOG1188 WD40 repeat protein [G 99.7 2.9E-15 6.4E-20 146.7 17.2 194 434-627 41-250 (376)
203 KOG2139 WD40 repeat protein [G 99.7 3E-14 6.6E-19 140.5 24.3 270 353-655 100-421 (445)
204 KOG1310 WD40 repeat protein [G 99.7 1.4E-15 3.1E-20 156.5 15.4 213 415-627 44-311 (758)
205 KOG2394 WD40 protein DMR-N9 [G 99.7 5.2E-15 1.1E-19 152.4 19.1 193 431-623 183-456 (636)
206 KOG1538 Uncharacterized conser 99.7 6.3E-15 1.4E-19 154.6 20.0 247 325-576 28-292 (1081)
207 KOG1272 WD40-repeat-containing 99.6 4.6E-16 9.9E-21 157.6 8.0 201 423-627 131-331 (545)
208 KOG1334 WD40 repeat protein [G 99.6 3E-15 6.5E-20 152.6 13.6 279 346-624 137-471 (559)
209 KOG1240 Protein kinase contain 99.6 1.1E-13 2.3E-18 154.8 25.8 262 342-624 1039-1339(1431)
210 PRK03629 tolB translocation pr 99.6 1.6E-13 3.4E-18 149.3 26.6 220 347-600 194-428 (429)
211 PRK11028 6-phosphogluconolacto 99.6 4.5E-13 9.8E-18 141.1 29.2 228 367-622 6-261 (330)
212 KOG1524 WD40 repeat-containing 99.6 9.2E-15 2E-19 150.3 15.1 183 348-574 101-283 (737)
213 KOG1963 WD40 repeat protein [G 99.6 2.1E-13 4.5E-18 148.7 25.8 236 355-622 20-325 (792)
214 PRK03629 tolB translocation pr 99.6 7.4E-13 1.6E-17 144.0 30.2 199 417-620 194-407 (429)
215 KOG3881 Uncharacterized conser 99.6 1.1E-13 2.3E-18 138.2 21.2 207 417-626 101-327 (412)
216 KOG2394 WD40 protein DMR-N9 [G 99.6 2E-14 4.4E-19 148.1 15.6 173 361-557 183-384 (636)
217 KOG2321 WD40 repeat protein [G 99.6 1.1E-13 2.4E-18 143.8 20.5 273 348-622 48-346 (703)
218 KOG2110 Uncharacterized conser 99.6 2.3E-12 4.9E-17 128.0 28.8 199 420-621 86-332 (391)
219 PRK05137 tolB translocation pr 99.6 1E-12 2.2E-17 143.7 29.5 203 415-622 195-415 (435)
220 KOG2139 WD40 repeat protein [G 99.6 9.4E-13 2E-17 130.1 26.0 278 324-619 114-431 (445)
221 PRK04922 tolB translocation pr 99.6 3.2E-13 6.9E-18 147.4 25.2 221 345-599 197-432 (433)
222 KOG4227 WD40 repeat protein [G 99.6 2.2E-13 4.7E-18 135.3 20.8 247 347-620 101-388 (609)
223 PRK02889 tolB translocation pr 99.6 3.1E-13 6.7E-18 147.1 24.4 222 346-600 190-425 (427)
224 PRK04922 tolB translocation pr 99.6 8.2E-13 1.8E-17 144.2 26.9 199 417-620 199-412 (433)
225 KOG1354 Serine/threonine prote 99.5 3.2E-13 6.8E-18 132.5 19.1 250 351-625 25-365 (433)
226 PF08662 eIF2A: Eukaryotic tra 99.5 5.2E-13 1.1E-17 128.7 20.6 152 467-624 9-183 (194)
227 KOG0322 G-protein beta subunit 99.5 8.9E-14 1.9E-18 131.9 14.5 158 419-576 148-322 (323)
228 PRK05137 tolB translocation pr 99.5 1.5E-12 3.3E-17 142.2 26.7 220 346-600 196-433 (435)
229 PF08662 eIF2A: Eukaryotic tra 99.5 7.6E-13 1.7E-17 127.5 21.2 155 425-585 9-186 (194)
230 PRK02889 tolB translocation pr 99.5 1.4E-12 3.1E-17 141.9 25.4 197 417-618 191-402 (427)
231 KOG1240 Protein kinase contain 99.5 1.9E-12 4.2E-17 144.9 23.6 217 410-626 1037-1280(1431)
232 KOG3881 Uncharacterized conser 99.5 2.7E-12 5.8E-17 128.3 20.3 221 352-600 106-342 (412)
233 KOG2111 Uncharacterized conser 99.5 2.9E-11 6.3E-16 118.1 26.2 197 419-618 92-321 (346)
234 KOG0974 WD-repeat protein WDR6 99.4 4.8E-12 1E-16 140.3 20.8 198 422-622 88-291 (967)
235 KOG4497 Uncharacterized conser 99.4 2E-11 4.3E-16 119.3 22.2 242 352-624 49-396 (447)
236 PF02239 Cytochrom_D1: Cytochr 99.4 2.3E-10 5E-15 121.3 32.3 244 355-628 40-356 (369)
237 KOG4497 Uncharacterized conser 99.4 3.5E-11 7.6E-16 117.6 23.0 264 331-612 72-425 (447)
238 TIGR02800 propeller_TolB tol-p 99.4 8E-11 1.7E-15 128.2 28.9 198 416-618 184-396 (417)
239 PF10282 Lactonase: Lactonase, 99.4 1.8E-09 3.9E-14 114.2 37.4 249 348-620 33-323 (345)
240 KOG4547 WD40 repeat-containing 99.4 1.7E-11 3.7E-16 128.8 20.9 189 431-621 3-222 (541)
241 TIGR02800 propeller_TolB tol-p 99.4 4.3E-11 9.4E-16 130.3 25.1 218 346-597 184-416 (417)
242 PRK00178 tolB translocation pr 99.4 7.3E-11 1.6E-15 129.0 26.8 221 346-600 193-428 (430)
243 PRK00178 tolB translocation pr 99.4 1.9E-10 4.1E-15 125.8 29.1 200 416-620 193-407 (430)
244 PRK01029 tolB translocation pr 99.4 1.3E-10 2.7E-15 126.3 25.9 221 350-601 183-426 (428)
245 PRK01029 tolB translocation pr 99.4 3.1E-10 6.8E-15 123.2 28.0 202 420-623 183-407 (428)
246 PRK04792 tolB translocation pr 99.4 3.8E-10 8.3E-15 123.4 28.2 199 416-619 212-425 (448)
247 KOG2321 WD40 repeat protein [G 99.4 3.6E-11 7.8E-16 125.3 18.5 212 418-630 48-313 (703)
248 PRK04792 tolB translocation pr 99.4 1.8E-10 3.8E-15 126.1 25.2 219 348-600 214-447 (448)
249 KOG2315 Predicted translation 99.3 1.8E-10 4E-15 120.2 21.7 111 505-620 270-391 (566)
250 KOG4547 WD40 repeat-containing 99.3 3.4E-10 7.3E-15 119.2 23.3 145 432-578 69-221 (541)
251 KOG1409 Uncharacterized conser 99.3 1.5E-10 3.2E-15 114.2 18.9 202 349-577 66-270 (404)
252 COG2706 3-carboxymuconate cycl 99.3 1.2E-08 2.5E-13 102.3 32.6 252 347-622 35-324 (346)
253 KOG0974 WD-repeat protein WDR6 99.3 4.3E-11 9.4E-16 132.9 16.5 195 357-578 93-289 (967)
254 KOG2041 WD40 repeat protein [G 99.3 1.3E-09 2.8E-14 116.2 25.8 257 350-622 13-340 (1189)
255 PF02239 Cytochrom_D1: Cytochr 99.3 1.9E-09 4.2E-14 114.2 27.1 192 436-628 9-211 (369)
256 KOG1064 RAVE (regulator of V-A 99.2 2.8E-11 6.1E-16 139.8 11.6 197 350-586 2207-2407(2439)
257 KOG1064 RAVE (regulator of V-A 99.2 5.3E-11 1.1E-15 137.7 12.3 197 416-627 2203-2406(2439)
258 KOG1354 Serine/threonine prote 99.2 3.5E-10 7.6E-15 111.4 16.1 228 350-579 83-361 (433)
259 KOG0280 Uncharacterized conser 99.2 1.2E-09 2.6E-14 105.8 19.3 196 424-621 124-335 (339)
260 KOG1334 WD40 repeat protein [G 99.2 2.2E-10 4.7E-15 117.6 14.4 215 413-627 134-432 (559)
261 PLN02919 haloacid dehalogenase 99.2 1.6E-08 3.5E-13 120.6 31.8 252 355-623 571-892 (1057)
262 KOG0280 Uncharacterized conser 99.2 2.4E-09 5.2E-14 103.7 19.9 201 421-622 69-287 (339)
263 KOG4190 Uncharacterized conser 99.2 5.7E-11 1.2E-15 122.9 8.7 208 412-622 726-951 (1034)
264 COG5170 CDC55 Serine/threonine 99.2 1.1E-09 2.4E-14 106.4 16.5 245 351-620 26-368 (460)
265 KOG1409 Uncharacterized conser 99.2 1.3E-09 2.8E-14 107.6 17.0 249 347-624 20-275 (404)
266 PF10282 Lactonase: Lactonase, 99.2 1.5E-07 3.3E-12 99.6 34.1 200 421-620 36-276 (345)
267 KOG4190 Uncharacterized conser 99.1 3.4E-10 7.3E-15 117.2 10.5 254 338-617 722-986 (1034)
268 TIGR02658 TTQ_MADH_Hv methylam 99.1 2.7E-07 5.9E-12 95.9 31.4 243 359-627 53-338 (352)
269 KOG2315 Predicted translation 99.1 2.6E-08 5.6E-13 104.5 23.4 218 350-600 164-411 (566)
270 COG5354 Uncharacterized protei 99.1 5.8E-08 1.3E-12 100.7 24.5 285 330-623 53-399 (561)
271 PF04762 IKI3: IKI3 family; I 99.1 1.2E-07 2.6E-12 111.2 30.5 239 351-618 75-378 (928)
272 KOG0309 Conserved WD40 repeat- 99.0 2.2E-09 4.7E-14 115.0 14.1 245 352-621 68-341 (1081)
273 PF15492 Nbas_N: Neuroblastoma 99.0 2.3E-07 5E-12 90.5 26.7 232 357-624 3-264 (282)
274 PF04762 IKI3: IKI3 family; I 99.0 1.5E-07 3.2E-12 110.5 29.4 270 348-621 117-458 (928)
275 KOG1912 WD40 repeat protein [G 99.0 3.5E-08 7.6E-13 106.6 21.4 239 354-622 18-307 (1062)
276 KOG4532 WD40-like repeat conta 99.0 9.6E-08 2.1E-12 91.6 21.2 231 362-620 83-332 (344)
277 KOG3914 WD repeat protein WDR4 99.0 9.4E-09 2E-13 103.8 14.7 164 354-544 65-232 (390)
278 KOG2314 Translation initiation 99.0 6.2E-08 1.3E-12 101.2 20.9 235 354-620 213-479 (698)
279 PRK04043 tolB translocation pr 99.0 3E-07 6.4E-12 99.5 27.3 190 353-577 189-400 (419)
280 PRK04043 tolB translocation pr 99.0 4.6E-07 1E-11 98.0 28.5 193 422-621 188-402 (419)
281 KOG3914 WD repeat protein WDR4 98.9 7.2E-09 1.6E-13 104.7 12.3 160 465-627 64-231 (390)
282 PF08450 SGL: SMP-30/Gluconola 98.9 3E-06 6.5E-11 85.2 30.7 216 356-607 4-243 (246)
283 COG4946 Uncharacterized protei 98.9 5.7E-07 1.2E-11 92.5 23.8 172 432-608 331-507 (668)
284 COG5354 Uncharacterized protei 98.9 3.6E-07 7.7E-12 95.0 22.3 236 351-621 32-308 (561)
285 COG2706 3-carboxymuconate cycl 98.9 2.9E-06 6.2E-11 85.4 27.9 207 417-623 35-278 (346)
286 PLN02919 haloacid dehalogenase 98.9 5.6E-07 1.2E-11 107.7 26.9 215 354-581 626-892 (1057)
287 KOG2695 WD40 repeat protein [G 98.9 5.5E-09 1.2E-13 103.2 8.1 157 469-629 217-386 (425)
288 PF13360 PQQ_2: PQQ-like domai 98.8 1.9E-06 4E-11 86.0 26.0 188 432-625 35-236 (238)
289 COG4946 Uncharacterized protei 98.8 2.4E-06 5.3E-11 88.0 26.3 148 347-524 355-507 (668)
290 KOG1832 HIV-1 Vpr-binding prot 98.8 1.8E-09 4E-14 117.4 3.6 215 346-605 1096-1317(1516)
291 KOG4714 Nucleoporin [Nuclear s 98.8 5.9E-08 1.3E-12 92.7 12.7 176 334-536 72-255 (319)
292 KOG2314 Translation initiation 98.8 6.9E-07 1.5E-11 93.6 21.0 265 351-620 249-574 (698)
293 TIGR03300 assembly_YfgL outer 98.8 1.9E-06 4.1E-11 92.5 25.7 188 433-628 145-347 (377)
294 COG5170 CDC55 Serine/threonine 98.7 1.9E-07 4.2E-12 91.1 14.1 205 420-626 25-316 (460)
295 KOG0309 Conserved WD40 repeat- 98.7 4.9E-08 1.1E-12 104.9 10.2 203 421-624 24-237 (1081)
296 TIGR03300 assembly_YfgL outer 98.7 2.1E-06 4.6E-11 92.2 23.2 175 434-616 191-376 (377)
297 KOG1832 HIV-1 Vpr-binding prot 98.7 6E-09 1.3E-13 113.6 3.2 200 412-626 1092-1298(1516)
298 KOG2695 WD40 repeat protein [G 98.7 5.2E-08 1.1E-12 96.5 9.1 159 437-598 228-401 (425)
299 KOG2066 Vacuolar assembly/sort 98.7 3.2E-07 6.9E-12 100.2 15.8 181 422-619 40-233 (846)
300 KOG1333 Uncharacterized conser 98.7 4E-08 8.7E-13 89.7 7.4 176 4-189 6-182 (241)
301 PF08450 SGL: SMP-30/Gluconola 98.7 2.4E-05 5.2E-10 78.6 28.5 191 426-624 4-217 (246)
302 KOG4532 WD40-like repeat conta 98.7 2.7E-06 5.8E-11 81.9 19.7 195 433-627 84-290 (344)
303 PF15492 Nbas_N: Neuroblastoma 98.7 2.8E-06 6.1E-11 83.0 20.3 200 354-588 46-270 (282)
304 KOG2066 Vacuolar assembly/sort 98.7 7.4E-07 1.6E-11 97.4 17.7 180 352-577 40-233 (846)
305 TIGR02658 TTQ_MADH_Hv methylam 98.7 3E-05 6.5E-10 80.8 28.9 196 429-628 53-296 (352)
306 KOG0882 Cyclophilin-related pe 98.7 2.8E-07 6E-12 94.3 13.3 251 350-627 8-313 (558)
307 KOG1912 WD40 repeat protein [G 98.6 1.5E-06 3.3E-11 94.3 18.2 247 348-622 52-367 (1062)
308 KOG4714 Nucleoporin [Nuclear s 98.6 3.2E-07 7E-12 87.8 11.5 163 416-578 84-255 (319)
309 KOG1275 PAB-dependent poly(A) 98.6 1.6E-06 3.5E-11 95.8 16.3 148 423-575 179-340 (1118)
310 PF07433 DUF1513: Protein of u 98.6 0.00012 2.7E-09 73.8 28.6 228 353-612 6-278 (305)
311 KOG0882 Cyclophilin-related pe 98.5 4.4E-07 9.5E-12 92.9 10.9 209 419-629 7-241 (558)
312 KOG2041 WD40 repeat protein [G 98.5 2.2E-06 4.8E-11 92.1 16.4 201 346-576 66-336 (1189)
313 KOG2114 Vacuolar assembly/sort 98.5 1.8E-05 4E-10 87.4 22.8 207 353-591 27-258 (933)
314 KOG1920 IkappaB kinase complex 98.5 1.5E-05 3.1E-10 91.2 22.2 241 350-624 67-327 (1265)
315 KOG1275 PAB-dependent poly(A) 98.5 2.4E-06 5.2E-11 94.4 15.6 180 433-617 147-340 (1118)
316 PF00400 WD40: WD domain, G-be 98.4 6.4E-07 1.4E-11 61.8 6.5 39 537-575 1-39 (39)
317 PF00400 WD40: WD domain, G-be 98.4 5.6E-07 1.2E-11 62.1 6.2 39 579-617 1-39 (39)
318 PF07433 DUF1513: Protein of u 98.4 0.00016 3.4E-09 73.0 26.0 202 424-627 7-255 (305)
319 KOG3617 WD40 and TPR repeat-co 98.4 1.3E-05 2.8E-10 87.9 19.0 224 354-608 18-374 (1416)
320 KOG1645 RING-finger-containing 98.4 2E-05 4.3E-10 80.1 18.5 204 414-620 186-462 (463)
321 PF13360 PQQ_2: PQQ-like domai 98.4 7E-05 1.5E-09 74.5 21.7 180 442-625 2-197 (238)
322 PF08596 Lgl_C: Lethal giant l 98.3 0.00021 4.6E-09 76.3 24.1 257 353-610 3-327 (395)
323 KOG2114 Vacuolar assembly/sort 98.3 6E-05 1.3E-09 83.4 19.8 193 428-623 30-247 (933)
324 PF11768 DUF3312: Protein of u 98.3 0.00041 8.8E-09 74.6 25.4 111 467-579 209-331 (545)
325 PF11768 DUF3312: Protein of u 98.3 5.1E-05 1.1E-09 81.3 18.4 114 507-622 207-332 (545)
326 KOG1008 Uncharacterized conser 98.2 5.4E-07 1.2E-11 96.0 3.0 239 352-618 57-334 (783)
327 PRK11138 outer membrane biogen 98.2 0.00026 5.6E-09 76.5 22.9 189 433-627 160-361 (394)
328 KOG3617 WD40 and TPR repeat-co 98.2 6.2E-05 1.3E-09 82.7 16.7 106 426-535 20-131 (1416)
329 PRK02888 nitrous-oxide reducta 98.2 0.00032 7E-09 77.1 22.1 186 432-620 140-405 (635)
330 KOG1920 IkappaB kinase complex 98.2 0.00054 1.2E-08 78.8 24.5 218 347-576 105-364 (1265)
331 PRK02888 nitrous-oxide reducta 98.1 0.00085 1.8E-08 73.9 24.8 180 427-609 198-451 (635)
332 PRK11138 outer membrane biogen 98.1 0.00053 1.1E-08 74.1 23.2 189 433-627 120-320 (394)
333 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0012 2.5E-08 71.5 25.3 173 422-602 81-272 (410)
334 KOG1008 Uncharacterized conser 98.0 1.5E-06 3.4E-11 92.6 1.4 196 422-620 57-276 (783)
335 PF02897 Peptidase_S9_N: Proly 98.0 0.0088 1.9E-07 65.0 30.9 241 354-624 126-409 (414)
336 PF04053 Coatomer_WDAD: Coatom 98.0 0.0011 2.5E-08 71.7 22.9 226 347-621 28-264 (443)
337 KOG4649 PQQ (pyrrolo-quinoline 98.0 0.0027 5.8E-08 61.5 21.9 98 362-488 62-160 (354)
338 KOG3621 WD40 repeat-containing 98.0 0.00051 1.1E-08 74.9 18.6 265 327-622 52-356 (726)
339 COG0823 TolB Periplasmic compo 97.9 0.00049 1.1E-08 74.2 18.2 191 416-610 187-390 (425)
340 PF06977 SdiA-regulated: SdiA- 97.9 0.0042 9.1E-08 61.9 23.3 198 416-616 16-247 (248)
341 PF06977 SdiA-regulated: SdiA- 97.9 0.0089 1.9E-07 59.5 25.1 198 347-574 17-247 (248)
342 PF06433 Me-amine-dh_H: Methyl 97.9 0.018 3.9E-07 59.1 27.6 250 355-629 39-330 (342)
343 PF08513 LisH: LisH; InterPro 97.9 1.9E-05 4.2E-10 49.2 3.6 27 4-30 1-27 (27)
344 KOG3621 WD40 repeat-containing 97.8 0.00017 3.7E-09 78.4 12.6 137 420-556 32-179 (726)
345 COG0823 TolB Periplasmic compo 97.8 0.0021 4.6E-08 69.4 21.0 190 346-567 187-389 (425)
346 PF08596 Lgl_C: Lethal giant l 97.8 0.0055 1.2E-07 65.5 23.0 204 423-628 3-299 (395)
347 PF00780 CNH: CNH domain; Int 97.8 0.018 3.9E-07 58.7 26.2 225 361-628 5-264 (275)
348 COG3386 Gluconolactonase [Carb 97.8 0.011 2.4E-07 61.0 24.1 184 422-608 66-274 (307)
349 cd00216 PQQ_DH Dehydrogenases 97.7 0.014 3.1E-07 64.8 26.4 182 441-629 173-434 (488)
350 COG3391 Uncharacterized conser 97.7 0.019 4.1E-07 61.6 25.7 217 354-600 76-309 (381)
351 PF00930 DPPIV_N: Dipeptidyl p 97.7 0.016 3.5E-07 61.5 25.0 187 421-609 42-301 (353)
352 PF00930 DPPIV_N: Dipeptidyl p 97.7 0.018 4E-07 61.1 24.8 244 351-608 42-346 (353)
353 PF08553 VID27: VID27 cytoplas 97.6 0.0015 3.2E-08 74.6 16.9 135 440-576 501-646 (794)
354 PF04053 Coatomer_WDAD: Coatom 97.6 0.0039 8.4E-08 67.6 19.2 181 417-615 28-219 (443)
355 COG3391 Uncharacterized conser 97.6 0.03 6.5E-07 60.1 25.3 200 424-626 76-290 (381)
356 KOG1645 RING-finger-containing 97.6 0.00092 2E-08 68.3 12.5 130 445-577 175-315 (463)
357 PF03178 CPSF_A: CPSF A subuni 97.6 0.022 4.8E-07 59.6 23.7 198 350-574 22-262 (321)
358 PF03178 CPSF_A: CPSF A subuni 97.5 0.031 6.8E-07 58.5 24.1 179 433-616 42-262 (321)
359 KOG4649 PQQ (pyrrolo-quinoline 97.5 0.047 1E-06 53.2 22.3 142 434-577 24-165 (354)
360 cd00216 PQQ_DH Dehydrogenases 97.4 0.025 5.4E-07 62.8 22.1 193 433-628 61-328 (488)
361 PF04841 Vps16_N: Vps16, N-ter 97.3 0.047 1E-06 59.1 23.2 175 444-627 62-254 (410)
362 KOG4640 Anaphase-promoting com 97.3 0.00095 2.1E-08 72.0 9.6 94 505-599 20-115 (665)
363 PF14655 RAB3GAP2_N: Rab3 GTPa 97.3 0.16 3.6E-06 54.3 25.8 81 547-627 307-406 (415)
364 KOG4640 Anaphase-promoting com 97.3 0.0012 2.7E-08 71.2 9.7 94 421-515 20-115 (665)
365 PF02897 Peptidase_S9_N: Proly 97.2 0.24 5.2E-06 53.8 27.5 192 424-619 126-357 (414)
366 PRK13616 lipoprotein LpqB; Pro 97.2 0.028 6E-07 63.5 20.3 180 422-612 350-561 (591)
367 smart00320 WD40 WD40 repeats. 97.2 0.001 2.2E-08 43.9 5.7 39 579-617 2-40 (40)
368 KOG2079 Vacuolar assembly/sort 97.2 0.0036 7.8E-08 71.5 12.9 103 361-492 97-202 (1206)
369 smart00320 WD40 WD40 repeats. 97.2 0.0011 2.5E-08 43.6 5.9 39 537-575 2-40 (40)
370 PRK10115 protease 2; Provision 97.2 0.7 1.5E-05 53.6 32.1 236 354-622 129-397 (686)
371 TIGR03074 PQQ_membr_DH membran 97.1 0.18 3.9E-06 58.6 25.8 197 433-630 194-488 (764)
372 PRK13616 lipoprotein LpqB; Pro 97.1 0.018 3.9E-07 64.9 17.2 148 464-619 350-525 (591)
373 PF06433 Me-amine-dh_H: Methyl 97.1 0.2 4.3E-06 51.6 22.6 153 434-587 148-330 (342)
374 PF08553 VID27: VID27 cytoplas 97.0 0.014 3.1E-07 66.8 15.6 140 475-619 493-647 (794)
375 COG3386 Gluconolactonase [Carb 97.0 0.17 3.6E-06 52.3 21.7 194 428-627 31-250 (307)
376 PF07995 GSDH: Glucose / Sorbo 97.0 0.44 9.6E-06 50.0 25.3 237 353-614 3-330 (331)
377 PF05096 Glu_cyclase_2: Glutam 96.9 0.5 1.1E-05 47.1 24.0 182 422-608 45-249 (264)
378 KOG2444 WD40 repeat protein [G 96.9 0.0011 2.4E-08 63.2 4.8 143 478-623 33-181 (238)
379 PHA02713 hypothetical protein; 96.9 0.075 1.6E-06 60.0 20.3 187 432-624 303-538 (557)
380 PF14783 BBS2_Mid: Ciliary BBS 96.9 0.038 8.2E-07 47.2 13.3 100 354-488 2-109 (111)
381 KOG2079 Vacuolar assembly/sort 96.9 0.018 4E-07 66.0 14.8 100 433-534 99-202 (1206)
382 smart00667 LisH Lissencephaly 96.9 0.0018 3.9E-08 42.7 4.1 31 2-32 2-32 (34)
383 PF14783 BBS2_Mid: Ciliary BBS 96.8 0.11 2.4E-06 44.4 15.6 100 508-614 2-109 (111)
384 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.8 0.64 1.4E-05 52.1 26.5 188 442-630 180-501 (527)
385 PF14583 Pectate_lyase22: Olig 96.8 0.52 1.1E-05 49.6 23.4 182 426-610 85-303 (386)
386 PF05694 SBP56: 56kDa selenium 96.6 0.68 1.5E-05 49.2 23.0 179 430-608 138-392 (461)
387 KOG2395 Protein involved in va 96.6 0.085 1.9E-06 56.3 16.3 142 474-619 344-500 (644)
388 COG3204 Uncharacterized protei 96.6 0.42 9E-06 47.9 19.9 167 419-586 83-271 (316)
389 TIGR02604 Piru_Ver_Nterm putat 96.5 0.98 2.1E-05 48.2 24.4 146 352-524 14-202 (367)
390 PHA03098 kelch-like protein; P 96.5 0.13 2.7E-06 58.1 18.4 185 432-622 294-514 (534)
391 TIGR03118 PEPCTERM_chp_1 conse 96.4 1.3 2.8E-05 44.8 25.4 224 354-599 25-307 (336)
392 PRK10115 protease 2; Provision 96.4 2.1 4.6E-05 49.6 27.5 194 422-619 127-344 (686)
393 KOG2395 Protein involved in va 96.3 0.052 1.1E-06 57.9 12.5 142 432-576 344-499 (644)
394 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.3 0.6 1.3E-05 52.3 21.7 190 433-624 69-338 (527)
395 KOG2444 WD40 repeat protein [G 96.2 0.014 3.1E-07 55.9 7.2 105 363-494 70-178 (238)
396 PF00780 CNH: CNH domain; Int 96.2 0.87 1.9E-05 46.2 21.1 144 432-582 6-170 (275)
397 KOG4441 Proteins containing BT 96.2 0.36 7.7E-06 54.6 19.5 190 426-623 327-550 (571)
398 TIGR03118 PEPCTERM_chp_1 conse 96.2 1.7 3.7E-05 44.0 23.4 202 424-627 25-287 (336)
399 COG3490 Uncharacterized protei 96.1 1.2 2.7E-05 44.3 19.7 184 428-617 120-346 (366)
400 PF14870 PSII_BNR: Photosynthe 96.1 2.1 4.6E-05 44.0 28.9 240 348-622 13-263 (302)
401 KOG4499 Ca2+-binding protein R 96.1 1.5 3.3E-05 42.4 19.8 134 464-599 109-263 (310)
402 PF10647 Gmad1: Lipoprotein Lp 96.0 0.59 1.3E-05 47.0 18.4 145 465-612 25-188 (253)
403 PHA02713 hypothetical protein; 96.0 0.16 3.4E-06 57.5 15.6 147 432-582 351-538 (557)
404 COG3490 Uncharacterized protei 96.0 0.58 1.3E-05 46.5 17.0 144 466-609 70-245 (366)
405 PF14655 RAB3GAP2_N: Rab3 GTPa 95.9 1.2 2.6E-05 47.8 21.0 83 504-586 306-407 (415)
406 KOG1897 Damage-specific DNA bi 95.9 2.3 4.9E-05 49.3 23.7 183 435-622 686-901 (1096)
407 COG3204 Uncharacterized protei 95.9 0.6 1.3E-05 46.8 17.2 193 427-621 48-265 (316)
408 KOG3630 Nuclear pore complex, 95.8 0.11 2.3E-06 60.3 12.6 143 422-565 101-261 (1405)
409 PF14870 PSII_BNR: Photosynthe 95.7 1.8 4E-05 44.5 20.7 153 460-616 141-301 (302)
410 KOG1916 Nuclear protein, conta 95.7 0.0039 8.4E-08 69.8 1.3 199 416-620 127-375 (1283)
411 PF15390 DUF4613: Domain of un 95.7 0.9 2E-05 49.6 18.7 148 422-577 20-186 (671)
412 PF14583 Pectate_lyase22: Olig 95.7 2.4 5.2E-05 44.7 21.4 195 428-623 42-276 (386)
413 PF10647 Gmad1: Lipoprotein Lp 95.7 2.3 5.1E-05 42.7 21.0 145 423-570 25-188 (253)
414 PF12894 Apc4_WD40: Anaphase-p 95.6 0.036 7.9E-07 39.6 5.4 31 351-381 11-41 (47)
415 PF10168 Nup88: Nuclear pore c 95.5 2 4.3E-05 49.7 22.0 93 422-537 85-181 (717)
416 PF15390 DUF4613: Domain of un 95.4 0.48 1E-05 51.7 15.2 148 464-619 20-186 (671)
417 PHA02790 Kelch-like protein; P 95.4 0.7 1.5E-05 51.3 17.5 179 433-622 272-473 (480)
418 KOG1897 Damage-specific DNA bi 95.2 7.4 0.00016 45.3 24.5 173 444-620 751-943 (1096)
419 PF12894 Apc4_WD40: Anaphase-p 95.2 0.055 1.2E-06 38.7 5.3 35 547-582 11-45 (47)
420 KOG2280 Vacuolar assembly/sort 95.2 1.7 3.6E-05 48.9 19.0 172 422-600 84-270 (829)
421 TIGR02604 Piru_Ver_Nterm putat 95.2 0.68 1.5E-05 49.4 16.2 142 466-610 16-204 (367)
422 KOG3630 Nuclear pore complex, 95.1 0.23 5E-06 57.7 12.5 144 463-608 100-262 (1405)
423 PHA03098 kelch-like protein; P 95.1 0.71 1.5E-05 52.0 16.9 142 432-579 342-513 (534)
424 KOG4441 Proteins containing BT 95.1 0.63 1.4E-05 52.6 16.2 186 433-624 285-504 (571)
425 KOG4499 Ca2+-binding protein R 95.0 1.3 2.7E-05 43.0 15.2 132 424-557 111-263 (310)
426 KOG0396 Uncharacterized conser 94.9 0.21 4.5E-06 51.1 10.2 149 3-176 115-266 (389)
427 TIGR03074 PQQ_membr_DH membran 94.9 6.1 0.00013 46.2 23.6 153 432-585 259-485 (764)
428 KOG1916 Nuclear protein, conta 94.8 0.027 5.9E-07 63.3 4.1 179 443-624 111-328 (1283)
429 PF05694 SBP56: 56kDa selenium 94.7 6.7 0.00015 41.9 21.1 193 432-624 86-347 (461)
430 PRK13684 Ycf48-like protein; P 94.7 3.1 6.8E-05 43.7 19.2 149 463-617 172-329 (334)
431 PF08728 CRT10: CRT10; InterP 94.6 1.8 4E-05 49.2 17.8 174 350-534 39-245 (717)
432 PF12234 Rav1p_C: RAVE protein 94.5 1 2.2E-05 50.7 15.4 113 506-620 30-157 (631)
433 KOG2659 LisH motif-containing 94.1 0.11 2.4E-06 50.1 6.1 169 2-186 25-197 (228)
434 COG3823 Glutamine cyclotransfe 94.1 1.9 4.1E-05 41.1 13.8 172 432-607 55-247 (262)
435 PF14727 PHTB1_N: PTHB1 N-term 94.1 10 0.00022 40.9 28.6 147 362-534 36-203 (418)
436 COG5167 VID27 Protein involved 93.8 2.7 5.9E-05 45.1 15.8 143 431-577 477-632 (776)
437 PF12234 Rav1p_C: RAVE protein 93.7 1.9 4.1E-05 48.7 15.6 109 466-576 32-155 (631)
438 PHA02790 Kelch-like protein; P 93.7 3 6.5E-05 46.3 17.5 139 432-579 318-472 (480)
439 PF10168 Nup88: Nuclear pore c 93.6 1.4 3.1E-05 50.9 14.9 94 463-579 84-181 (717)
440 KOG2377 Uncharacterized conser 93.5 2.5 5.5E-05 44.7 14.8 120 419-540 64-190 (657)
441 PRK13684 Ycf48-like protein; P 93.3 12 0.00026 39.3 24.2 112 505-621 172-289 (334)
442 COG5167 VID27 Protein involved 93.3 1.9 4.2E-05 46.2 13.9 143 474-620 478-633 (776)
443 PF14761 HPS3_N: Hermansky-Pud 93.0 6.9 0.00015 37.7 16.0 138 434-576 29-213 (215)
444 KOG1983 Tomosyn and related SN 92.7 3.5 7.5E-05 49.7 16.8 72 546-623 197-268 (993)
445 PF08728 CRT10: CRT10; InterP 92.3 4.8 0.0001 46.0 16.2 142 433-576 49-245 (717)
446 PF14761 HPS3_N: Hermansky-Pud 90.7 17 0.00036 35.2 17.1 137 476-618 29-213 (215)
447 PF05096 Glu_cyclase_2: Glutam 90.7 20 0.00043 36.0 26.0 181 354-566 47-249 (264)
448 PF05935 Arylsulfotrans: Aryls 90.6 20 0.00044 39.7 19.0 149 469-622 153-370 (477)
449 KOG4460 Nuclear pore complex, 90.3 7.9 0.00017 41.9 14.4 97 422-540 104-203 (741)
450 KOG2280 Vacuolar assembly/sort 90.3 20 0.00044 40.7 18.1 199 422-627 44-254 (829)
451 PLN00033 photosystem II stabil 90.1 21 0.00045 38.4 17.9 146 422-574 239-396 (398)
452 KOG2247 WD40 repeat-containing 90.1 0.039 8.4E-07 58.3 -2.6 143 468-613 39-182 (615)
453 PF13449 Phytase-like: Esteras 89.9 22 0.00048 37.1 17.8 156 463-619 19-249 (326)
454 PF07569 Hira: TUP1-like enhan 89.6 2.2 4.8E-05 41.8 9.4 69 555-624 18-100 (219)
455 KOG2377 Uncharacterized conser 89.4 10 0.00022 40.5 14.2 137 425-564 26-170 (657)
456 PF10313 DUF2415: Uncharacteri 89.3 1.2 2.6E-05 31.1 5.0 32 548-579 1-35 (43)
457 TIGR03606 non_repeat_PQQ dehyd 89.3 38 0.00081 37.1 19.8 106 463-568 29-166 (454)
458 KOG2247 WD40 repeat-containing 88.9 0.067 1.5E-06 56.6 -1.9 137 424-562 37-174 (615)
459 COG4257 Vgb Streptogramin lyas 88.9 27 0.00059 35.0 17.0 196 422-620 62-263 (353)
460 PF07569 Hira: TUP1-like enhan 88.6 2.6 5.6E-05 41.4 9.0 66 513-579 18-97 (219)
461 PF08801 Nucleoporin_N: Nup133 88.5 22 0.00048 38.6 17.3 32 590-621 190-221 (422)
462 PLN02193 nitrile-specifier pro 88.3 38 0.00081 37.5 19.0 145 474-623 228-414 (470)
463 KOG4460 Nuclear pore complex, 88.2 5.2 0.00011 43.3 11.3 29 507-535 105-133 (741)
464 COG5276 Uncharacterized conser 88.2 32 0.00068 34.9 24.4 151 421-580 86-244 (370)
465 COG1520 FOG: WD40-like repeat 87.7 41 0.0009 35.7 20.0 189 435-629 70-278 (370)
466 PF14727 PHTB1_N: PTHB1 N-term 87.6 30 0.00066 37.4 17.0 143 433-576 37-203 (418)
467 COG5276 Uncharacterized conser 87.4 35 0.00077 34.5 25.1 255 331-619 107-369 (370)
468 PF10313 DUF2415: Uncharacteri 87.1 1.8 3.9E-05 30.2 4.8 31 352-382 1-34 (43)
469 KOG1900 Nuclear pore complex, 86.7 5.7 0.00012 47.6 11.6 136 440-578 96-273 (1311)
470 PF10395 Utp8: Utp8 family; I 86.6 65 0.0014 36.8 22.8 162 421-586 129-314 (670)
471 PLN00033 photosystem II stabil 86.3 52 0.0011 35.4 26.3 146 466-616 241-396 (398)
472 KOG3616 Selective LIM binding 86.1 18 0.00038 40.9 14.1 32 352-383 15-46 (1636)
473 PF10395 Utp8: Utp8 family; I 85.7 71 0.0015 36.4 25.1 158 463-624 129-310 (670)
474 PF07995 GSDH: Glucose / Sorbo 85.5 15 0.00032 38.6 13.3 103 465-568 3-134 (331)
475 TIGR03547 muta_rot_YjhT mutatr 85.5 51 0.0011 34.6 21.9 39 570-610 291-331 (346)
476 PF08801 Nucleoporin_N: Nup133 85.2 56 0.0012 35.5 18.2 31 548-578 190-220 (422)
477 PF05935 Arylsulfotrans: Aryls 85.0 68 0.0015 35.6 19.5 117 427-547 153-313 (477)
478 PF10214 Rrn6: RNA polymerase 85.0 90 0.0019 36.9 26.0 157 461-621 77-278 (765)
479 COG3823 Glutamine cyclotransfe 84.9 37 0.0008 32.7 13.8 121 441-565 109-247 (262)
480 PLN02153 epithiospecifier prot 84.6 56 0.0012 34.3 19.1 66 474-539 85-171 (341)
481 PF12657 TFIIIC_delta: Transcr 84.6 8.1 0.00017 36.3 9.8 31 422-452 86-122 (173)
482 PF13449 Phytase-like: Esteras 84.2 57 0.0012 34.1 17.4 143 421-564 19-231 (326)
483 PF02333 Phytase: Phytase; In 83.6 66 0.0014 34.3 22.2 193 361-585 66-299 (381)
484 PF02333 Phytase: Phytase; In 83.3 68 0.0015 34.2 23.2 187 431-621 66-292 (381)
485 KOG1900 Nuclear pore complex, 83.0 14 0.00029 44.6 12.4 136 482-620 96-273 (1311)
486 TIGR03548 mutarot_permut cycli 81.8 69 0.0015 33.2 21.3 107 432-539 72-198 (323)
487 PF11715 Nup160: Nucleoporin N 81.8 8.2 0.00018 43.6 10.2 38 507-544 216-257 (547)
488 PF12657 TFIIIC_delta: Transcr 81.7 6.9 0.00015 36.8 8.1 30 506-535 86-121 (173)
489 COG5290 IkappaB kinase complex 81.5 1.1E+02 0.0024 35.3 20.1 31 462-492 111-141 (1243)
490 COG4590 ABC-type uncharacteriz 81.4 3 6.5E-05 44.1 5.8 167 416-585 215-394 (733)
491 PRK14131 N-acetylneuraminic ac 80.6 84 0.0018 33.5 20.2 38 571-610 314-353 (376)
492 COG5290 IkappaB kinase complex 80.6 30 0.00066 39.5 13.3 206 347-559 108-348 (1243)
493 TIGR03548 mutarot_permut cycli 80.2 78 0.0017 32.8 18.9 134 474-610 72-233 (323)
494 KOG2817 Predicted E3 ubiquitin 80.2 13 0.00028 38.9 9.9 121 3-137 116-239 (394)
495 PF03022 MRJP: Major royal jel 79.2 57 0.0012 33.4 14.4 134 486-620 35-216 (287)
496 TIGR03547 muta_rot_YjhT mutatr 78.9 89 0.0019 32.7 16.9 42 527-568 168-210 (346)
497 TIGR02276 beta_rpt_yvtn 40-res 78.7 9.7 0.00021 25.8 6.1 40 557-597 1-41 (42)
498 PF12768 Rax2: Cortical protei 78.3 31 0.00067 35.2 11.9 111 485-596 16-143 (281)
499 PF10607 CLTH: CTLH/CRA C-term 78.3 3.3 7.1E-05 37.6 4.5 79 75-153 21-102 (145)
500 KOG3616 Selective LIM binding 78.1 37 0.00079 38.6 12.9 69 422-493 15-83 (1636)
No 1
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.4e-102 Score=823.01 Aligned_cols=623 Identities=40% Similarity=0.676 Sum_probs=499.6
Q ss_pred CchHHHHHHHHHHHHhcCccHHHHHHHHHHhcCCCCCC-CCCC------------------CCCCc--------hhhccc
Q 006220 1 MDELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNN-TNPI------------------DILND--------PELSKF 53 (656)
Q Consensus 1 ~~~~~~~~~v~~yl~~~~~~~~e~~~~~e~~~~~~~~~-~~~~------------------~~~~~--------~~~~~~ 53 (656)
+.+++++++|++||+|+||++||++||+|+.+..++.. ++.. +...+ .++...
T Consensus 19 ~~~~~~n~~v~~yl~~~~y~~te~~l~~e~~l~s~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 98 (707)
T KOG0263|consen 19 SHTRDLNRIVLEYLRKKKYSRTEEMLRQEANLPSRPVNGMPAEPDYDREQFEALPPIGLPKENADDETPQGLSSSAVPVE 98 (707)
T ss_pred cchHHHHHHHHHHHhhhcccccchhhhhhhcccccccCCCccccchhhhhhhccCCccccccccCCcccccccccCchhh
Confidence 35689999999999999999999999999987665311 1000 00000 011111
Q ss_pred ccccccccC--ChhhHHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhHHhhHHH
Q 006220 54 FRTFSESED--GPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRD 131 (656)
Q Consensus 54 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~sld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~ 131 (656)
.. .... -|++|+.+|..||.||+.|||+||+||.+||||+|||+||+|+++++.+.||.||++|+.||..+|.++
T Consensus 99 ~~---~~~~~~~~~~ye~~y~~lk~~ve~Sldi~k~El~~iLypifv~~yldl~~~~~~~~a~~Ffe~f~~d~~~~~~e~ 175 (707)
T KOG0263|consen 99 KA---LWSAEEIPDQYEHVYSELKTWVEDSLDIYKAELSPILYPIFVHSYLDLVQKSAYETAKSFFERFRGDHKVYHSES 175 (707)
T ss_pred hc---cccccCCChhHhhhhhhcchhhhCcchhhhHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHhccchhhhhhHH
Confidence 10 1123 488899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCChhhhccCHHHHHhhcCceEEEEchhhHHHHHHHHhhCCc---chHhHhhcceeEEEEcCCC-CCCCCcccc
Q 006220 132 LQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQS---TKMLGIINERINFQVSPGQ-PSSISDDAE 207 (656)
Q Consensus 132 ~~~l~~~~~~~~~~~~~~~~~~~~~k~~v~~~~~~~~~l~~~l~~~~~---~~~~~i~~~~~~~~~~~~~-~~~~~~~~~ 207 (656)
|++|..+..++||.+|+.++.||.|||+|+|++.+|++|++||++.+. .+|++|||+||.|+++.+. ++....+.+
T Consensus 176 i~~l~~~~~~~~i~~ne~~~~~~~~ky~i~~sr~s~~lL~~~l~~~~~~~g~~i~~ii~~hldi~v~~~~~~r~~~~~~~ 255 (707)
T KOG0263|consen 176 IFQLLSLETIKHIKENETARAFRKNKYVIRLSRDSFDLLLRFLQEDNNIGGTIIIKIINQHLDIDVFDGVMARRTTKPTA 255 (707)
T ss_pred HHHHHhhhhHHHHhhhhhHHHHhhCcEEEEecHHHHHHHHHHhhhhccccchHHHHHHHHHhCccccccccccccccchh
Confidence 999999999999999999999999999999999999999999999877 8999999999999999873 222222222
Q ss_pred -----ccccccCCchhhhcccccceeccCCcchhhhhhhhccccccchhhhcccchhhhhcccCCCCCCCCCCcchhchh
Q 006220 208 -----IVTLIGSNQDAANQINQKEVHWGLLEDSLENRLEKTGLISDSEKAEGENKEAEIDENKKRPVEGGKQGASIKKLK 282 (656)
Q Consensus 208 -----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (656)
...|+|. ...+.|+.++++|+++...+ ++++..... +.+|. +.++..+. .++.+
T Consensus 256 ~~g~~~~~i~g~---~~~e~~~~~~~l~~~~~e~~--~~~~~~~~~------e~~D~--------~~~~~~~~--~~~~~ 314 (707)
T KOG0263|consen 256 MVGSEQESIAGE---AKREINKQKVQLGLLLKEEE--IEKKLPILL------EVEDD--------PNEPDNEK--LKKPK 314 (707)
T ss_pred hccccccccccc---chhhcccceeeecccccchh--hhhcccccc------cCccc--------cccccccc--cccch
Confidence 2245553 34566789999999998443 544321100 11111 11111110 11111
Q ss_pred hhhhhhhcccccccccCcCCCCCCCCCCCCCCCCCh---hHHHHHHHHhccceecCCCCCCceeEEEEeeCCCCeEEEEE
Q 006220 283 KDKAINATAKTSRLEANTVSTAPRVKPDLALPVMPT---EVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASI 359 (656)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lp~~~~---~~~~~~~~~~~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~f 359 (656)
+.+..... ...+++ +|. ++.+|+|+... ..+...+.+.++++.+....+|++|+||+++...+++|+.|
T Consensus 315 ~~~~~~~~---k~~d~~----~ps-~d~iPlPp~~~~d~~~~~~~l~d~~kr~~l~~~~lpSic~YT~~nt~~~v~ca~f 386 (707)
T KOG0263|consen 315 KKKLLSEE---KKRDPN----APS-RDRIPLPPLKQVDKLAELEALKDEQKRVKLGRNSLPSICMYTFHNTYQGVTCAEF 386 (707)
T ss_pred hhhhhhhh---hccccC----CCc-cccCCCCcccchhHHHHHHHHHHHHHHhhcCCCCCCcEEEEEEEEcCCcceeEee
Confidence 11111100 111111 232 67788887655 56667889999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCC----CCCccccCCCCCceeeEEeecCccCEEEEEEccCCCE
Q 006220 360 SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDT----TPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDF 435 (656)
Q Consensus 360 s~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~ 435 (656)
|+|+++||.|+.|++|++|.+...+.............. .....+. ..........+.||++||++++|+|+.++
T Consensus 387 SddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~-D~~~~~~~~~L~GH~GPVyg~sFsPd~rf 465 (707)
T KOG0263|consen 387 SDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDML-DDDSSGTSRTLYGHSGPVYGCSFSPDRRF 465 (707)
T ss_pred cCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhc-cccCCceeEEeecCCCceeeeeecccccc
Confidence 999999999999999999999864322221111100000 0111222 22333455669999999999999999999
Q ss_pred EEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcC
Q 006220 436 ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI 515 (656)
Q Consensus 436 L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p 515 (656)
|++||+|++||+|++.++.+++.++||..|||++.|+|.|.||||||.|+++++|..+..+|.+++.+|.++|.|+.|||
T Consensus 466 LlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHP 545 (707)
T KOG0263|consen 466 LLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHP 545 (707)
T ss_pred eeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEE
Q 006220 516 NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTL 595 (656)
Q Consensus 516 ~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l 595 (656)
|++|++|||.|.+||+||+.+|..+|.|.||.++|++++|||+|++|++|+.||.|.+||+.+++.+..+.+|++.|.++
T Consensus 546 Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~Sl 625 (707)
T KOG0263|consen 546 NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSL 625 (707)
T ss_pred cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCCCceeec---------ccccCCccccccccccCCCCCeEEEEEcC
Q 006220 596 AYSCEGSLLASGSADCTVKLWDVTTSTKVLKT---------EEKSGTNRLRSLKTLPTKSTPVYSLQVLR 656 (656)
Q Consensus 596 ~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~---------~~~~~~~~~~~l~~~p~~~~pv~sv~Ftr 656 (656)
.||.+|.+||+||.|++|++||+......... ..........++..+++|.+||.+|+|||
T Consensus 626 sFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~Ftr 695 (707)
T KOG0263|consen 626 SFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTR 695 (707)
T ss_pred EEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEec
Confidence 99999999999999999999999876554111 11122345568999999999999999997
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-43 Score=347.48 Aligned_cols=268 Identities=31% Similarity=0.594 Sum_probs=240.3
Q ss_pred EEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (656)
Q Consensus 345 ~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 424 (656)
-.+.+|.+.|.|+.|+|+|+.||+|+.|.++|+||+.+ .....+..+|...|
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~T----------------------------eTp~~t~KgH~~WV 160 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDT----------------------------ETPLFTCKGHKNWV 160 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCC----------------------------CCcceeecCCccEE
Confidence 35778999999999999999999999999999999986 33556788999999
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEeccCCcee-EEeeCCCccEEEEEEec-----CCCEEEEEECCCcEEEEECCCCcee
Q 006220 425 YSASFSPLGDFILSSSADTTIRLWSTKLNANL-VCYKGHNYPVWDVQFNP-----QGHYFASSSHDRTARIWSMDRIQPL 498 (656)
Q Consensus 425 ~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~-~~~~~h~~~V~~l~~sp-----~~~~l~sgs~Dg~i~lwd~~~~~~~ 498 (656)
.|++|+|||+.|++|+.||+|++||..+++++ ..+.+|...|++++|.| ..++|++++.||+++|||+..+.++
T Consensus 161 lcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~ 240 (480)
T KOG0271|consen 161 LCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCV 240 (480)
T ss_pred EEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEE
Confidence 99999999999999999999999999988875 67899999999999987 5679999999999999999999999
Q ss_pred EEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEE-----------------------------------
Q 006220 499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF----------------------------------- 543 (656)
Q Consensus 499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~----------------------------------- 543 (656)
..+.+|..+|+|+.|--+| +|++||.|++|++|+...|.+.+.+
T Consensus 241 ~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se 319 (480)
T KOG0271|consen 241 RTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSE 319 (480)
T ss_pred EEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHH
Confidence 9999999999999997554 8999999999999987655433322
Q ss_pred --------------------------------------------ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 544 --------------------------------------------IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579 (656)
Q Consensus 544 --------------------------------------------~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~ 579 (656)
.+|..-|+.+.||||++++|+++-|.+|++||-++|
T Consensus 320 ~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG 399 (480)
T KOG0271|consen 320 EQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG 399 (480)
T ss_pred HHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc
Confidence 267777888999999999999999999999999999
Q ss_pred eeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEcC
Q 006220 580 RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR 656 (656)
Q Consensus 580 ~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ftr 656 (656)
+.+..+++|-++|+.++|+.|.++|++|+.|.++++|++++.+ +..-+|++...|++|.+++
T Consensus 400 k~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK---------------l~~DLpGh~DEVf~vDwsp 461 (480)
T KOG0271|consen 400 KFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK---------------LKQDLPGHADEVFAVDWSP 461 (480)
T ss_pred chhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee---------------ecccCCCCCceEEEEEecC
Confidence 9999999999999999999999999999999999999998754 3445788888888888764
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.3e-42 Score=338.87 Aligned_cols=266 Identities=31% Similarity=0.515 Sum_probs=246.8
Q ss_pred EeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (656)
Q Consensus 347 ~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 426 (656)
..+...+|..+.||.|+..||+|+-+|.++||+... .....++.||.+.|.+
T Consensus 171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~----------------------------~~~~~~l~gH~~~v~~ 222 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQ----------------------------CNLLQTLRGHTSRVGA 222 (459)
T ss_pred hccCCCcceeeEeecCCCeEEEeecCCceeEeecCC----------------------------cceeEEEeccccceee
Confidence 456677899999999999999999999999999875 3467789999999999
Q ss_pred EEEccC--CCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCC
Q 006220 427 ASFSPL--GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (656)
Q Consensus 427 l~~spd--~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~ 504 (656)
+.|+|. +..++||+.||++++|++.+...+..+.+|...|..++|+|+|++|+|++.|.+.++||+++...+....||
T Consensus 223 ~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGH 302 (459)
T KOG0272|consen 223 AVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGH 302 (459)
T ss_pred EEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccc
Confidence 999997 458999999999999999998999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEe
Q 006220 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP 584 (656)
Q Consensus 505 ~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~ 584 (656)
...|.+++|+|+|..++||+.|..-||||+++|.++..+.+|..+|..++|+|+|..||||+.|++++|||++..+.+.+
T Consensus 303 s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ 382 (459)
T KOG0272|consen 303 SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYT 382 (459)
T ss_pred ccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCccEEEEEEcC-CCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEc
Q 006220 585 LMGHTSCVWTLAYSC-EGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVL 655 (656)
Q Consensus 585 ~~~h~~~V~~l~~s~-~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ft 655 (656)
+.+|..-|+.+.|+| .|.+|+|++.|++++||.-.+..+ +..+.+|.+.|.||.++
T Consensus 383 ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~---------------~ksLaGHe~kV~s~Dis 439 (459)
T KOG0272|consen 383 IPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSP---------------LKSLAGHEGKVISLDIS 439 (459)
T ss_pred cccccchhhheEecccCCeEEEEcccCcceeeecCCCccc---------------chhhcCCccceEEEEec
Confidence 999999999999999 789999999999999999887654 44555666666666654
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.4e-41 Score=335.65 Aligned_cols=262 Identities=25% Similarity=0.452 Sum_probs=245.1
Q ss_pred HhccceecCCCCCCceeEEEEeeCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccc
Q 006220 327 DLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI 404 (656)
Q Consensus 327 ~~~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~d--g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 404 (656)
.....+++|+.... ....+|.+|.+.|.++.|+|. +.-||+|+.||+|++|+++.
T Consensus 194 swsG~~kvW~~~~~-~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~---------------------- 250 (459)
T KOG0272|consen 194 SWSGLVKVWSVPQC-NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ---------------------- 250 (459)
T ss_pred ecCCceeEeecCCc-ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC----------------------
Confidence 34556778875444 345588999999999999997 56899999999999999875
Q ss_pred cCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECC
Q 006220 405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD 484 (656)
Q Consensus 405 ~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D 484 (656)
...+..+.+|...|..++|+|+|++|+|+|.|.+-++||+.++..+....||..+|.+++|.|+|..++|||.|
T Consensus 251 ------e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD 324 (459)
T KOG0272|consen 251 ------ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLD 324 (459)
T ss_pred ------CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCcc
Confidence 23556688999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcC-CCCEEE
Q 006220 485 RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMA 563 (656)
Q Consensus 485 g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp-~g~~L~ 563 (656)
..-+|||++++.++-.+.+|..+|.+|+|+|||-.|||||.|++++|||++...++.++.+|..-|+.+.|+| .|.+|+
T Consensus 325 ~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~ 404 (459)
T KOG0272|consen 325 SLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLV 404 (459)
T ss_pred chhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 789999
Q ss_pred EEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220 564 SGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617 (656)
Q Consensus 564 s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd 617 (656)
|++.|++++||...++.+++.+.||.+.|.+++.+++++.++|++.|.+|++|.
T Consensus 405 TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 405 TASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999999999999999999999999999999999999999999999995
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-40 Score=323.70 Aligned_cols=260 Identities=30% Similarity=0.526 Sum_probs=234.3
Q ss_pred ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (656)
...+++|+... ..+.++..+|.+-|.|++|||||+.||+|+.||.|++||-.++
T Consensus 136 D~TvR~WD~~T-eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg------------------------- 189 (480)
T KOG0271|consen 136 DTTVRLWDLDT-ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTG------------------------- 189 (480)
T ss_pred CceEEeeccCC-CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCC-------------------------
Confidence 34788998654 3456688999999999999999999999999999999996642
Q ss_pred CCceeeEEeecCccCEEEEEEcc-----CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC
Q 006220 409 GRKRSYTLYQGHSGPVYSASFSP-----LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH 483 (656)
Q Consensus 409 ~~~~~~~~l~~h~~~V~~l~~sp-----d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~ 483 (656)
...-+.+.+|...|++++|.| ..++|+++|.||+|+|||+..+.++..+.+|+.+|+|++|.-+| ++++||.
T Consensus 190 --~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~ 266 (480)
T KOG0271|consen 190 --QQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQ 266 (480)
T ss_pred --CcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCC
Confidence 234466889999999999976 56799999999999999999999999999999999999998554 8999999
Q ss_pred CCcEEEEECCCCc-------------------------------------------------------------------
Q 006220 484 DRTARIWSMDRIQ------------------------------------------------------------------- 496 (656)
Q Consensus 484 Dg~i~lwd~~~~~------------------------------------------------------------------- 496 (656)
|++|++|+...+.
T Consensus 267 DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~ 346 (480)
T KOG0271|consen 267 DRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDF 346 (480)
T ss_pred CceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCc
Confidence 9999999865321
Q ss_pred ------------eeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEE
Q 006220 497 ------------PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS 564 (656)
Q Consensus 497 ------------~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s 564 (656)
++..+.+|..-|+.+.|+||++++|++|-|+.|++||-++|+.+..|.||-++|..++||.|.++|++
T Consensus 347 tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS 426 (480)
T KOG0271|consen 347 TLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVS 426 (480)
T ss_pred eEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEE
Confidence 22334578888999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220 565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617 (656)
Q Consensus 565 ~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd 617 (656)
|+.|.++++||+++.+....+.+|...|.++.|+|||+.+++|+.|..+++|.
T Consensus 427 ~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 427 GSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999999999999999999999999999999999999999999995
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.5e-37 Score=293.97 Aligned_cols=272 Identities=27% Similarity=0.427 Sum_probs=236.8
Q ss_pred EEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccC----------CC--------CCCCCCCccccC
Q 006220 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGL----------QG--------ENDTTPREDIIG 406 (656)
Q Consensus 345 ~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~----------~~--------~~~~~~~~~~~~ 406 (656)
.++.+|.+.|.|+.|++|+++|++++.||.+.|||.-+..+....+.. +. .+.......+..
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~ 128 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST 128 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence 578999999999999999999999999999999998764433221110 00 000111111111
Q ss_pred C--CCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEec-CCCEEEEEEC
Q 006220 407 P--NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSH 483 (656)
Q Consensus 407 ~--~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~ 483 (656)
. .+.....+.+.+|++-+.|+.|-+ ...|+++|.|.+..+||+++++.+..|.+|.+.|.+++++| +++.|++|+.
T Consensus 129 ~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~c 207 (343)
T KOG0286|consen 129 RDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGC 207 (343)
T ss_pred ccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccc
Confidence 1 222345567899999999999987 56789999999999999999999999999999999999999 9999999999
Q ss_pred CCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecC--CCCeEEEEEcCCCCE
Q 006220 484 DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRY 561 (656)
Q Consensus 484 Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h--~~~i~~l~~sp~g~~ 561 (656)
|++.++||++.+.+++.|.+|.++|++|+|+|+|.-+++|+.|+++|+||++..+.+..+... ..+|++++||..|++
T Consensus 208 D~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRl 287 (343)
T KOG0286|consen 208 DKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRL 287 (343)
T ss_pred ccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccE
Confidence 999999999999999999999999999999999999999999999999999999998888733 358999999999999
Q ss_pred EEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220 562 MASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617 (656)
Q Consensus 562 L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd 617 (656)
|++|..|..+.+||.-.++.+..+.+|.+.|.++..+|||.-+++|+.|.+++||.
T Consensus 288 Lfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 288 LFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999999999999999999999999999999999999994
No 7
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=100.00 E-value=1.3e-38 Score=285.70 Aligned_cols=132 Identities=44% Similarity=0.815 Sum_probs=129.3
Q ss_pred hhhHHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhHHhhHHHHHHHhcCCChhh
Q 006220 64 PARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSH 143 (656)
Q Consensus 64 ~~~~~~~~~~l~~~~~~sld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~ 143 (656)
|..|+++|.+||+||+++||+||+||.++||||||||||+||++|+.++|++||++|+++|...|+++|++|++|++|+|
T Consensus 1 ~~~y~~~y~~l~~wv~~~ld~~k~EL~~lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~ 80 (133)
T cd08044 1 PNDYEQAYSKLRKWIESSLDIYKYELSQLLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEH 80 (133)
T ss_pred ChHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHhhcCceEEEEchhhHHHHHHHHhhCCcchHhHhhcceeEEEEc
Q 006220 144 LEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQVS 195 (656)
Q Consensus 144 ~~~~~~~~~~~~~k~~v~~~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~ 195 (656)
+++|++++.||+|||+|+||+.++++|++||++.++.++++|||+|+.+++.
T Consensus 81 l~~n~~~~~~r~~Ky~i~ms~~s~~lL~~~L~~~~~~~~~~il~~~i~~~~~ 132 (133)
T cd08044 81 LKENELAKLFRSNKYVIRMSRDAYSLLLRFLESWGGSLLLKILNEHIDIDVR 132 (133)
T ss_pred HhhhHHHHHHHhCCEEEEECHHHHHHHHHHHHHCCcHHHHHHHHhccccccc
Confidence 9999999999999999999999999999999999999999999999888763
No 8
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=100.00 E-value=2e-38 Score=287.41 Aligned_cols=133 Identities=44% Similarity=0.821 Sum_probs=123.8
Q ss_pred cccCChhhHHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhHHhhHHHHHHHhcC
Q 006220 59 ESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGV 138 (656)
Q Consensus 59 ~~~~~~~~~~~~~~~l~~~~~~sld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~ 138 (656)
..+.||..|+++|.+|++||++|||+||+||+++||||||||||+||++|+.++|++||+||+++|...|.++|++|+.|
T Consensus 7 ~~~~~p~~y~~~y~~l~~wv~~sld~yK~EL~~lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i 86 (142)
T PF04494_consen 7 IEENDPDKYEQAYSRLRNWVDNSLDIYKPELSRLLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSI 86 (142)
T ss_dssp SS---GCCHHHHHHHHHHHHHTS-HHHHHHHGGGHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT-
T ss_pred cccCCHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhccCHHHHHhhcCceEEEEchhhHHHHHHHHhhCCcc---hHhHhhcceeE
Q 006220 139 LSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQST---KMLGIINERIN 191 (656)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~k~~v~~~~~~~~~l~~~l~~~~~~---~~~~i~~~~~~ 191 (656)
++|+|+++|++++.||+|||+|+||+.++++|+.||+++++. +||+|||+||+
T Consensus 87 ~~~~~l~~~~~~~~~r~~Ky~I~ls~~s~~lL~~fL~~~~~~g~~~ll~iin~~i~ 142 (142)
T PF04494_consen 87 TSPEHLEENELARLFRSNKYVIRLSRDSFSLLLQFLQENENSGGSVLLRIINQHIQ 142 (142)
T ss_dssp -SHHHHHHSHHHHHHHCSGEEEEEEHHHHHHHHHHHHHTTCHTHHHHHHHHHHHEE
T ss_pred CcHHHHhccHHHHHHHhCCeeEEECHHHHHHHHHHHHhCCcchHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999998 99999999985
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-35 Score=279.20 Aligned_cols=260 Identities=27% Similarity=0.451 Sum_probs=230.5
Q ss_pred EEEeeCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220 345 YTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (656)
Q Consensus 345 ~~~~~~~~~V~~l~fs~d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 423 (656)
-++.+|.+.|+.++..+. ...+.+++.|..|.+|++... ....+...+.+.||+..
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------------d~~~G~~~r~~~GHsH~ 65 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------------DIKYGVPVRRLTGHSHF 65 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------------ccccCceeeeeeccceE
Confidence 367889999999999887 678889999999999999852 11224567889999999
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecC
Q 006220 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG 503 (656)
Q Consensus 424 V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~ 503 (656)
|..+..++||++.++++.|+++++||+.+++....+.+|...|.+++|+++.+.+++|+.|++|++|++-..........
T Consensus 66 v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~ 145 (315)
T KOG0279|consen 66 VSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHED 145 (315)
T ss_pred ecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987554444443
Q ss_pred -CCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe
Q 006220 504 -HLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580 (656)
Q Consensus 504 -~~~~V~~v~~~p~--~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~ 580 (656)
+...|.|+.|+|+ ..+|++++.|++|++||+++.+....+.+|.+.++.+++||||...++|+.||.+.+||++.++
T Consensus 146 ~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k 225 (315)
T KOG0279|consen 146 SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK 225 (315)
T ss_pred CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCc
Confidence 3788999999998 6899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeeccc
Q 006220 581 CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE 629 (656)
Q Consensus 581 ~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~ 629 (656)
.+..+ .|...|.+++|+|+.-.|+.+. +..|+|||+.+...+..+..
T Consensus 226 ~lysl-~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~ 272 (315)
T KOG0279|consen 226 NLYSL-EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKL 272 (315)
T ss_pred eeEec-cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccc
Confidence 98776 6778999999999976665554 55699999999887765543
No 10
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.7e-35 Score=297.41 Aligned_cols=249 Identities=28% Similarity=0.528 Sum_probs=232.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (656)
Q Consensus 351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 430 (656)
...|+|++|+.+|++||+|+.||.++||+... .....+..|.+||.++.|+
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G-----------------------------~l~~tl~~HkgPI~slKWn 285 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDG-----------------------------NLISTLGQHKGPIFSLKWN 285 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCc-----------------------------hhhhhhhccCCceEEEEEc
Confidence 45799999999999999999999999999763 3556678899999999999
Q ss_pred cCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeE
Q 006220 431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC 510 (656)
Q Consensus 431 pd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~ 510 (656)
.+|.+|++++.|+++.+||..+++....+.-|..+-.++.|-. ..-|++++.|+.|+++-+....|+.++.+|.+.|.+
T Consensus 286 k~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~a 364 (524)
T KOG0273|consen 286 KKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNA 364 (524)
T ss_pred CCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEE
Confidence 9999999999999999999999999999999998878899984 457999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCC---------CEEEEEECCCcEEEEeCCCCee
Q 006220 511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG---------RYMASGDEDGTIMMWDLASGRC 581 (656)
Q Consensus 511 v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g---------~~L~s~~~dg~I~iwD~~~~~~ 581 (656)
+.|+|.+..|+++|.|++++||....+.++..+.+|...|..+.|+|.| ..+++++.|++|++||+..+.+
T Consensus 365 lk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~ 444 (524)
T KOG0273|consen 365 LKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP 444 (524)
T ss_pred EEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce
Confidence 9999999999999999999999999999999999999999999999954 4799999999999999999999
Q ss_pred eEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeeccc
Q 006220 582 VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE 629 (656)
Q Consensus 582 ~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~ 629 (656)
++.+..|+.+|++++|+|+|+++|+|+.||.|.||++.+++.......
T Consensus 445 i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~ 492 (524)
T KOG0273|consen 445 IHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG 492 (524)
T ss_pred eEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC
Confidence 999999999999999999999999999999999999999887665543
No 11
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.4e-35 Score=270.93 Aligned_cols=271 Identities=22% Similarity=0.419 Sum_probs=238.6
Q ss_pred HhccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccC
Q 006220 327 DLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG 406 (656)
Q Consensus 327 ~~~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (656)
.....|++|.+ ...+|..++....+.|+.+.+.||+++||+| ....||+||+....
T Consensus 17 ~YDhTIRfWqa-~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa-~~qhvRlyD~~S~n---------------------- 72 (311)
T KOG0315|consen 17 GYDHTIRFWQA-LTGICSRTIQHPDSQVNRLEITPDKKDLAAA-GNQHVRLYDLNSNN---------------------- 72 (311)
T ss_pred cCcceeeeeeh-hcCeEEEEEecCccceeeEEEcCCcchhhhc-cCCeeEEEEccCCC----------------------
Confidence 45678889975 4567888888888899999999999999998 56789999998622
Q ss_pred CCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCc
Q 006220 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT 486 (656)
Q Consensus 407 ~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~ 486 (656)
......+.+|...|+++.|..+|+++++||+||+++|||++...+.+.++ |..+|.++..+|+...|++|..+|.
T Consensus 73 ----p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~ 147 (311)
T KOG0315|consen 73 ----PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGN 147 (311)
T ss_pred ----CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCc
Confidence 23667789999999999999999999999999999999999877777666 7799999999999999999999999
Q ss_pred EEEEECCCCceeEEec-CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC------eeEEEEecCCCCeEEEEEcCCC
Q 006220 487 ARIWSMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG------ECVRIFIGHRSMILSLAMSPDG 559 (656)
Q Consensus 487 i~lwd~~~~~~~~~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~------~~~~~~~~h~~~i~~l~~sp~g 559 (656)
|++||+....+.+.+. .....|.++..+|+|.+++.+...|.+++|++-+. .++..++.|.+.+..+.+||++
T Consensus 148 irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~ 227 (311)
T KOG0315|consen 148 IRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDV 227 (311)
T ss_pred EEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCC
Confidence 9999999876665544 44567999999999999999999999999998754 4566788999999999999999
Q ss_pred CEEEEEECCCcEEEEeCCCC-eeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceee
Q 006220 560 RYMASGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLK 626 (656)
Q Consensus 560 ~~L~s~~~dg~I~iwD~~~~-~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~ 626 (656)
++|++++.|.+++||+.... +.-..+.+|..-++.++||.||.+|++|+.|+.+++|++..++.+..
T Consensus 228 k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~q 295 (311)
T KOG0315|consen 228 KYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQ 295 (311)
T ss_pred cEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeee
Confidence 99999999999999999877 55667789999999999999999999999999999999999876543
No 12
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3e-36 Score=298.04 Aligned_cols=244 Identities=27% Similarity=0.527 Sum_probs=223.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (656)
Q Consensus 351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 430 (656)
...|..+.|.|+|+.|++|+..|.+.+|+... ...-..++.|..+|.++.|+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~----------------------------fnFEtilQaHDs~Vr~m~ws 147 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS----------------------------FNFETILQAHDSPVRTMKWS 147 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCce----------------------------eeHHHHhhhhcccceeEEEc
Confidence 34699999999999999999999999999653 11224467899999999999
Q ss_pred cCCCEEEEEeCCCeEEEEeccCCceeEEeeC-CCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCee
Q 006220 431 PLGDFILSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVD 509 (656)
Q Consensus 431 pd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~ 509 (656)
+++.+++||+.+|.|++|+..- ..+..+.. |...|.+++|+|+...|++||.||+|+|||....+..+.+.+|.-.|.
T Consensus 148 ~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk 226 (464)
T KOG0284|consen 148 HNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK 226 (464)
T ss_pred cCCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcc
Confidence 9999999999999999999874 34444444 558999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCC
Q 006220 510 CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT 589 (656)
Q Consensus 510 ~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~ 589 (656)
|++|||....|++|+.|..|++||.++|.|+.++.+|+..|..+.|+|++++|++++.|..++++|+++.+.+..+++|.
T Consensus 227 svdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hk 306 (464)
T KOG0284|consen 227 SVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHK 306 (464)
T ss_pred eeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEcC-CCCEEEEEECCCcEEEEeCCCCCc
Q 006220 590 SCVWTLAYSC-EGSLLASGSADCTVKLWDVTTSTK 623 (656)
Q Consensus 590 ~~V~~l~~s~-~~~~l~sgs~Dg~I~iWd~~~~~~ 623 (656)
..|+++.|+| ...+|.+|+.||.|..|.+...+.
T Consensus 307 kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p 341 (464)
T KOG0284|consen 307 KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEP 341 (464)
T ss_pred hhheeeccccccccceeeccCCCceEEEecccccc
Confidence 9999999999 567899999999999999984443
No 13
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.8e-34 Score=270.23 Aligned_cols=248 Identities=27% Similarity=0.429 Sum_probs=218.9
Q ss_pred eeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCc
Q 006220 342 VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS 421 (656)
Q Consensus 342 ~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~ 421 (656)
.....+.+|...|+.+..++||++.++++.|+.+++||+.. +...+.+.||.
T Consensus 54 ~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~----------------------------g~~t~~f~GH~ 105 (315)
T KOG0279|consen 54 VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLAT----------------------------GESTRRFVGHT 105 (315)
T ss_pred ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecC----------------------------CcEEEEEEecC
Confidence 34456788889999999999999999999999999999985 35678899999
Q ss_pred cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCC--CccEEEEEEecC--CCEEEEEECCCcEEEEECCCCce
Q 006220 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH--NYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRIQP 497 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h--~~~V~~l~~sp~--~~~l~sgs~Dg~i~lwd~~~~~~ 497 (656)
.-|.+++|++|++.+++||.|.+|++|++.. .+..++..+ ..-|.|+.|+|+ ..+|+++|.|+++++||+++.+.
T Consensus 106 ~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l 184 (315)
T KOG0279|consen 106 KDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL 184 (315)
T ss_pred CceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch
Confidence 9999999999999999999999999999984 454444433 788999999997 78999999999999999999999
Q ss_pred eEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 498 LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (656)
Q Consensus 498 ~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~ 577 (656)
...+.+|.+.++.++++|+|...++|+.||.+.+||++.++++..+. |...|.+++|+|+.-+|+.+. +..|+|||+.
T Consensus 185 ~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~ 262 (315)
T KOG0279|consen 185 RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLE 262 (315)
T ss_pred hhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeecc-CCceEEEecc
Confidence 99999999999999999999999999999999999999999987764 788999999999977777665 4569999999
Q ss_pred CCeeeEeeeC----C-----CccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 578 SGRCVTPLMG----H-----TSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 578 ~~~~~~~~~~----h-----~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
++.++..+.. . .....+++|+++|..|++|-.|+.|++|.+..
T Consensus 263 ~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 263 SKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred chhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence 9988877642 2 22356889999999999999999999998753
No 14
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-34 Score=283.67 Aligned_cols=255 Identities=27% Similarity=0.476 Sum_probs=238.5
Q ss_pred EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
.+.+|...|+.+-|+|+-.++|+++.|++|++||..+ +.....+.||...|.
T Consensus 103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~t----------------------------g~~e~~LrGHt~sv~ 154 (406)
T KOG0295|consen 103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTET----------------------------GELERSLRGHTDSVF 154 (406)
T ss_pred hhhccccceeeeeeccCceEEEEecCCceEEEEEccc----------------------------hhhhhhhhcccccee
Confidence 4567888999999999999999999999999999875 334567889999999
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeccC-CceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCC
Q 006220 426 SASFSPLGDFILSSSADTTIRLWSTKL-NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (656)
Q Consensus 426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~-~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~ 504 (656)
.++|+..|+++++|+.|-.+.+||..+ .+++....+|...|.++.|-|.|.++++++.|.+|+.|+++++.++..+.+|
T Consensus 155 di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h 234 (406)
T KOG0295|consen 155 DISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGH 234 (406)
T ss_pred EEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCc
Confidence 999999999999999999999999986 5678888899999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCC---------------CCEEEEEECCC
Q 006220 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD---------------GRYMASGDEDG 569 (656)
Q Consensus 505 ~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~---------------g~~L~s~~~dg 569 (656)
...|..++.+.+|..+++++.|.+|++|-+.+++|...++.|..+|-|++|.|. |.++++++.|+
T Consensus 235 ~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk 314 (406)
T KOG0295|consen 235 SEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK 314 (406)
T ss_pred hHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccc
Confidence 999999999999999999999999999999999999999999999999999872 35999999999
Q ss_pred cEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecc
Q 006220 570 TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTE 628 (656)
Q Consensus 570 ~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~ 628 (656)
+|++||+.+|.++.++.+|...|.+++|+|.|++|+|+..|+++++||+.+.+++...+
T Consensus 315 tIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 315 TIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred eEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC
Confidence 99999999999999999999999999999999999999999999999999988766554
No 15
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.2e-34 Score=308.87 Aligned_cols=208 Identities=33% Similarity=0.620 Sum_probs=199.8
Q ss_pred eEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220 343 SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (656)
Q Consensus 343 ~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 422 (656)
...++.+|.++|..+.|+|+.++|++++.|++||+|++.+ ......+.||..
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t----------------------------~s~~V~y~GH~~ 494 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT----------------------------WSCLVIYKGHLA 494 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeeccc----------------------------ceeEEEecCCCc
Confidence 3456899999999999999999999999999999999986 346677889999
Q ss_pred CEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec
Q 006220 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA 502 (656)
Q Consensus 423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~ 502 (656)
||+++.|+|-|-+++|||.|++-++|..+....++.+.+|.+.|.|+.|+|+.+|+++||.|+++++||+.++..++.|.
T Consensus 495 PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~ 574 (707)
T KOG0263|consen 495 PVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT 574 (707)
T ss_pred ceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (656)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~ 578 (656)
||.++|.+++|+|+|++|++|+.||.|.+||+.++..+..+.+|++.|.++.||.+|..||+|+.|++|++||+..
T Consensus 575 GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 575 GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999854
No 16
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=6.9e-34 Score=271.63 Aligned_cols=269 Identities=25% Similarity=0.448 Sum_probs=237.7
Q ss_pred EEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (656)
Q Consensus 345 ~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 424 (656)
..+.+|.+.|.++.|+|+|.+||+|+.|..|.+|++.. .......+.+|++.|
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g---------------------------dceN~~~lkgHsgAV 93 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYG---------------------------DCENFWVLKGHSGAV 93 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccc---------------------------cccceeeecccccee
Confidence 34678899999999999999999999999999999764 134556677999999
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCC-EEEEEECCCcEEEEECCCCceeEEecC
Q 006220 425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDRTARIWSMDRIQPLRIMAG 503 (656)
Q Consensus 425 ~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~sgs~Dg~i~lwd~~~~~~~~~~~~ 503 (656)
..+.|.+|++.+++++.|.+|+.||+++++++..+++|...|..+.-+.-|. ++.+|+.||++++||+++..++..+.
T Consensus 94 M~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~- 172 (338)
T KOG0265|consen 94 MELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE- 172 (338)
T ss_pred EeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-
Confidence 9999999999999999999999999999999999999999999998555444 56778899999999999988888775
Q ss_pred CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC----C
Q 006220 504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS----G 579 (656)
Q Consensus 504 ~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~----~ 579 (656)
..-.++++.|...+..+.+|+-|+.|++||++.+....++.||..+|+.|..+|+|.++.+-+.|.++++||++. .
T Consensus 173 ~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~ 252 (338)
T KOG0265|consen 173 NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQ 252 (338)
T ss_pred cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCC
Confidence 446799999999999999999999999999999999999999999999999999999999999999999999974 3
Q ss_pred eeeEeeeCCC----ccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEc
Q 006220 580 RCVTPLMGHT----SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVL 655 (656)
Q Consensus 580 ~~~~~~~~h~----~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ft 655 (656)
+++..+.+|. .....++|+|+++.+.+|+.|..+++||..+.. .++.+|++...|.+++|-
T Consensus 253 R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~---------------~lyklpGh~gsvn~~~Fh 317 (338)
T KOG0265|consen 253 RCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRR---------------ILYKLPGHYGSVNEVDFH 317 (338)
T ss_pred ceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccccc---------------EEEEcCCcceeEEEeeec
Confidence 5677777764 345678999999999999999999999987643 566778888888888875
Q ss_pred C
Q 006220 656 R 656 (656)
Q Consensus 656 r 656 (656)
+
T Consensus 318 p 318 (338)
T KOG0265|consen 318 P 318 (338)
T ss_pred C
Confidence 3
No 17
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-34 Score=301.48 Aligned_cols=296 Identities=26% Similarity=0.416 Sum_probs=265.1
Q ss_pred cccccCcCCCCCCCCCCCCCCCCChhHHHHHHHHhccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCC
Q 006220 294 SRLEANTVSTAPRVKPDLALPVMPTEVEQSILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDS 373 (656)
Q Consensus 294 ~~~~~~~~~~~p~~~~~~~lp~~~~~~~~~~~~~~~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg 373 (656)
.+..+.++.++|.+..++++..++|+..+.+...+...+++|+.....+....-++ .+.|+++.|+++|++||+|..+|
T Consensus 161 ~~~~p~rvLDaP~l~dDfY~nlldWss~n~laValg~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~~LavG~~~g 239 (484)
T KOG0305|consen 161 IPQTPYRVLDAPGLQDDFYLNLLDWSSANVLAVALGQSVYLWSASSGSVTELCSFG-EELVTSVKWSPDGSHLAVGTSDG 239 (484)
T ss_pred ccCChhhhccCCcccccHhhhHhhcccCCeEEEEecceEEEEecCCCceEEeEecC-CCceEEEEECCCCCEEEEeecCC
Confidence 34567889999999999999999999888888899999999999888866655555 78899999999999999999999
Q ss_pred cEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeec-CccCEEEEEEccCCCEEEEEeCCCeEEEEeccC
Q 006220 374 SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG-HSGPVYSASFSPLGDFILSSSADTTIRLWSTKL 452 (656)
Q Consensus 374 ~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~ 452 (656)
.|.|||.... .....+.+ |.+.|-+++|+ +..+.+|+.|+.|..+|++.
T Consensus 240 ~v~iwD~~~~----------------------------k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~ 289 (484)
T KOG0305|consen 240 TVQIWDVKEQ----------------------------KKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRI 289 (484)
T ss_pred eEEEEehhhc----------------------------cccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEec
Confidence 9999998752 23333445 99999999999 67899999999999999998
Q ss_pred CceeEE-eeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcC-CCCEEEEE--ECCCc
Q 006220 453 NANLVC-YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI-NCNYIATG--SSDKT 528 (656)
Q Consensus 453 ~~~~~~-~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p-~~~~l~tg--s~dg~ 528 (656)
...... +.+|...|+.+.|++++.++|+|+.|+.+.|||.....++..+..|...|.+++|+| ....||+| +.|++
T Consensus 290 ~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~ 369 (484)
T KOG0305|consen 290 SQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC 369 (484)
T ss_pred chhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE
Confidence 877665 889999999999999999999999999999999999999999999999999999999 56788885 47999
Q ss_pred EEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEE--EECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEE
Q 006220 529 VRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS--GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLAS 606 (656)
Q Consensus 529 V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s--~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s 606 (656)
|++||+.+|..+.... ..+.|..|.|++..+-|++ |..++.|.||+..+.+.+..+.+|...|..++++|||..+++
T Consensus 370 i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t 448 (484)
T KOG0305|consen 370 IKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVT 448 (484)
T ss_pred EEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEE
Confidence 9999999999998775 4578999999999877776 456789999999999999999999999999999999999999
Q ss_pred EECCCcEEEEeCCCC
Q 006220 607 GSADCTVKLWDVTTS 621 (656)
Q Consensus 607 gs~Dg~I~iWd~~~~ 621 (656)
|+.|.++++|++...
T Consensus 449 ~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 449 GAADETLRFWNLFDE 463 (484)
T ss_pred ecccCcEEeccccCC
Confidence 999999999999875
No 18
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.6e-35 Score=285.34 Aligned_cols=260 Identities=28% Similarity=0.571 Sum_probs=227.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (656)
Q Consensus 350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 429 (656)
...+|.|+.+. ...+++|..|.+|+|||.+. ......+.||+|.|.|+.|
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~----------------------------~~c~~~L~GHtGSVLCLqy 245 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNS----------------------------LECLKILTGHTGSVLCLQY 245 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEecccc----------------------------HHHHHhhhcCCCcEEeeec
Confidence 45679999984 45799999999999999875 3355678899999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCce---eEEecCCCC
Q 006220 430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP---LRIMAGHLS 506 (656)
Q Consensus 430 spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~---~~~~~~~~~ 506 (656)
. .+.+++||.|.+|++||+++++++.++-+|...|..+.|+ ..+++++|.|+++.+||+..... .+.+.||..
T Consensus 246 d--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrA 321 (499)
T KOG0281|consen 246 D--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA 321 (499)
T ss_pred c--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhh
Confidence 6 5799999999999999999999999999999999999997 56999999999999999987653 356779999
Q ss_pred CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeee
Q 006220 507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM 586 (656)
Q Consensus 507 ~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~ 586 (656)
.|+.+.|+ .+|+++++.|.+|++|++.++++++++.+|...|-|+.+. |+++++|++|.+|++||+..|.++..+.
T Consensus 322 aVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLe 397 (499)
T KOG0281|consen 322 AVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE 397 (499)
T ss_pred heeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHh
Confidence 99999995 4599999999999999999999999999999999999886 8999999999999999999999999999
Q ss_pred CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEc
Q 006220 587 GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVL 655 (656)
Q Consensus 587 ~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ft 655 (656)
||..-|.++.|. .+.+++|+.||+|+|||+..+.... ....--.+.++-.++..|+.++|-
T Consensus 398 GHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpr------a~~~~~Cl~~lv~hsgRVFrLQFD 458 (499)
T KOG0281|consen 398 GHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPR------APASTLCLRTLVEHSGRVFRLQFD 458 (499)
T ss_pred chHHhhhheeec--CceeeeccccceEEEEecccccCCc------ccccchHHHhhhhccceeEEEeec
Confidence 999999999996 6689999999999999998865322 111222455667778889998884
No 19
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=8.3e-34 Score=276.15 Aligned_cols=260 Identities=23% Similarity=0.471 Sum_probs=241.1
Q ss_pred CceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeec
Q 006220 340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419 (656)
Q Consensus 340 ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 419 (656)
|-.....+.+|.+-|.|+++.|-..++++|+.|++|+|||+.+ +.....+.|
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat----------------------------g~LkltltG 191 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT----------------------------GQLKLTLTG 191 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc----------------------------CeEEEeecc
Confidence 3333445678889999999999999999999999999999986 455667889
Q ss_pred CccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 006220 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR 499 (656)
Q Consensus 420 h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~ 499 (656)
|-..|..+++|+-..|+++++.|+.|+.||+...+.+..|.||-+.|.|++.+|.-..+++|+.|.++++||+++...+.
T Consensus 192 hi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~ 271 (460)
T KOG0285|consen 192 HIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVH 271 (460)
T ss_pred hhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579 (656)
Q Consensus 500 ~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~ 579 (656)
.+.||..+|..+.+.|-...+++||.|++|++||++.|+....+..|...+.+++.+|....+|+++.| .|+-|++..|
T Consensus 272 ~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g 350 (460)
T KOG0285|consen 272 VLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEG 350 (460)
T ss_pred EecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCcc
Confidence 999999999999999988899999999999999999999999999999999999999999999999887 5999999999
Q ss_pred eeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeeccc
Q 006220 580 RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE 629 (656)
Q Consensus 580 ~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~ 629 (656)
..+..+.+|+..|.+++.+.|+ ++++|+..|.+.+||.+++..-+..+.
T Consensus 351 ~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t 399 (460)
T KOG0285|consen 351 EFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQT 399 (460)
T ss_pred chhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccc
Confidence 9999999999999999998776 788999999999999999887665543
No 20
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.8e-35 Score=290.16 Aligned_cols=261 Identities=25% Similarity=0.464 Sum_probs=230.5
Q ss_pred ccceecCCCCCCceeE-EEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCC
Q 006220 329 RNRVHLSSAALPSVSF-YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP 407 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~~-~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (656)
...+.||+... ..+ ..+..|.+.|+++.||++|.++++|..+|.|++|+..-
T Consensus 117 SGEFtLWNg~~--fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm------------------------- 169 (464)
T KOG0284|consen 117 SGEFTLWNGTS--FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM------------------------- 169 (464)
T ss_pred cccEEEecCce--eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-------------------------
Confidence 34566776521 111 12457888999999999999999999999999999763
Q ss_pred CCCceeeEEeec-CccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCc
Q 006220 408 NGRKRSYTLYQG-HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT 486 (656)
Q Consensus 408 ~~~~~~~~~l~~-h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~ 486 (656)
..+....+ |...|.+++|||+...+++||.||+|+|||....+.-..+.+|...|.+++|+|....+++||.|..
T Consensus 170 ----nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnl 245 (464)
T KOG0284|consen 170 ----NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNL 245 (464)
T ss_pred ----hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCce
Confidence 12223334 4599999999999999999999999999999988888888999999999999999999999999999
Q ss_pred EEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCC-CCEEEEE
Q 006220 487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD-GRYMASG 565 (656)
Q Consensus 487 i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~-g~~L~s~ 565 (656)
|++||.+++.++.++.+|...|..+.|+|++++|+|+|.|..++++|+++-+.++++++|...++++.|+|- ..+|.+|
T Consensus 246 VKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsg 325 (464)
T KOG0284|consen 246 VKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSG 325 (464)
T ss_pred eEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999994 5688899
Q ss_pred ECCCcEEEEeCCCCeeeEeee-CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 566 DEDGTIMMWDLASGRCVTPLM-GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 566 ~~dg~I~iwD~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
+.||.|..|.+...+++..+. +|.+.|++++|+|-|.+|++|+.|.++++|.-..
T Consensus 326 g~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 326 GSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred cCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence 999999999998666666554 7999999999999999999999999999998654
No 21
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.8e-33 Score=303.70 Aligned_cols=253 Identities=31% Similarity=0.618 Sum_probs=228.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (656)
Q Consensus 351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 430 (656)
...|+|+.|+++|+++++++.++.+++|++..... .....+.+|...|.+++|+
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--------------------------~~~~~l~~h~~~v~~~~fs 212 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--------------------------NLLRELSGHTRGVSDVAFS 212 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--------------------------hhhccccccccceeeeEEC
Confidence 67899999999999999999999999999854110 1233447899999999999
Q ss_pred cCCCEEEEEeCCCeEEEEec-cCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCee
Q 006220 431 PLGDFILSSSADTTIRLWST-KLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVD 509 (656)
Q Consensus 431 pd~~~L~s~s~Dg~I~lwd~-~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~ 509 (656)
|+++++++|+.|++|++||+ ..+.++.++++|...|++++|+|+|+.+++|+.|++|++||++++++++.+.+|...|+
T Consensus 213 ~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 213 PDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred CCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 99999999999999999999 55688999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCe--eEEEEecCCCC--eEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEee
Q 006220 510 CVRWHINCNYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSM--ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL 585 (656)
Q Consensus 510 ~v~~~p~~~~l~tgs~dg~V~iwd~~~~~--~~~~~~~h~~~--i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~ 585 (656)
+++|++++++|++++.|+.|++||+.++. ++..+.++... ++++.|+|+|.++++++.|+.+++||+..+.++..+
T Consensus 293 ~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~ 372 (456)
T KOG0266|consen 293 GLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTY 372 (456)
T ss_pred EEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeee
Confidence 99999999999999999999999999999 67777777665 999999999999999999999999999999999999
Q ss_pred eCCCcc---EEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeeccc
Q 006220 586 MGHTSC---VWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE 629 (656)
Q Consensus 586 ~~h~~~---V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~ 629 (656)
.+|... +.+...++.+.++++|+.|+.|.+|++.++........
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~ 419 (456)
T KOG0266|consen 373 TGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEG 419 (456)
T ss_pred cccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcC
Confidence 998864 44555678999999999999999999998766554443
No 22
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=6.9e-32 Score=273.64 Aligned_cols=252 Identities=37% Similarity=0.697 Sum_probs=230.2
Q ss_pred EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
++.+|.+.|+|++|+|++++|++|+.+|.|++|++... .....+.+|...+.
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~----------------------------~~~~~~~~~~~~i~ 55 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG----------------------------ELLRTLKGHTGPVR 55 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC----------------------------CcEEEEecCCccee
Confidence 35578899999999999999999999999999998741 13445667889999
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCC
Q 006220 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL 505 (656)
Q Consensus 426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~ 505 (656)
++.|+|+++++++++.||.|++|++.++..+..+..|...|.++.|++++.++++++.||.+++||+++.+....+..|.
T Consensus 56 ~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 135 (289)
T cd00200 56 DVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHT 135 (289)
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCC
Confidence 99999999999999999999999999888888888999999999999998889988889999999999888888888999
Q ss_pred CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEee
Q 006220 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL 585 (656)
Q Consensus 506 ~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~ 585 (656)
..+.+++|+|++.++++++.++.|++||+++++.+..+..|...+.++.|+|+++.+++++.||.|++||+..++.+..+
T Consensus 136 ~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 136 DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL 215 (289)
T ss_pred CcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch
Confidence 99999999999999999888999999999999999999999999999999999999999999999999999999999888
Q ss_pred eCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625 (656)
Q Consensus 586 ~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~ 625 (656)
..|...|.+++|++++.++++++.||.|++|++.++....
T Consensus 216 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~ 255 (289)
T cd00200 216 RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQ 255 (289)
T ss_pred hhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEE
Confidence 8899999999999999899988889999999998755443
No 23
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-33 Score=275.49 Aligned_cols=260 Identities=31% Similarity=0.543 Sum_probs=237.8
Q ss_pred ceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCC
Q 006220 331 RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGR 410 (656)
Q Consensus 331 ~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (656)
.++.|+...... .-.+.+|.++|..++|+..|++||+++.|-.+++||....
T Consensus 131 tikv~D~~tg~~-e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~--------------------------- 182 (406)
T KOG0295|consen 131 TIKVFDTETGEL-ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF--------------------------- 182 (406)
T ss_pred eEEEEEccchhh-hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH---------------------------
Confidence 344444333322 3456788899999999999999999999999999998741
Q ss_pred ceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEE
Q 006220 411 KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIW 490 (656)
Q Consensus 411 ~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lw 490 (656)
...++.+.+|...|.++.|-|.|.+++|++.|.+|+.|++.++-++.++.+|..-|..++.+.||.++++|+.|.++++|
T Consensus 183 ~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW 262 (406)
T KOG0295|consen 183 FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVW 262 (406)
T ss_pred HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEE
Confidence 23556678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCceeEEecCCCCCeeEEEEcCC---------------CCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEE
Q 006220 491 SMDRIQPLRIMAGHLSDVDCVRWHIN---------------CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM 555 (656)
Q Consensus 491 d~~~~~~~~~~~~~~~~V~~v~~~p~---------------~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~ 555 (656)
-+.+.++...+++|.-+|.|++|-|. +.++++++.|++|++||+.+|.|+.++.+|...|..++|
T Consensus 263 ~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af 342 (406)
T KOG0295|consen 263 VVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAF 342 (406)
T ss_pred EeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEE
Confidence 99999999999999999999999752 258999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220 556 SPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618 (656)
Q Consensus 556 sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~ 618 (656)
+|.|+||+++.+|+++++||+++++|++.+..|...|++++|+.+..+++||+.|.++++|..
T Consensus 343 ~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 343 SPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999999999999999999999999999999999999999999999999999974
No 24
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.4e-34 Score=289.31 Aligned_cols=251 Identities=26% Similarity=0.446 Sum_probs=226.4
Q ss_pred CCceeEEEEeeCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEe
Q 006220 339 LPSVSFYTFINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417 (656)
Q Consensus 339 ~ps~~~~~~~~~~~~V~~l~fs~-dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 417 (656)
+|....+++.+|..+|+++.|.| .+.+|++|+.|+.|+||++.. ....++++
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~---------------------------~~~~lrtf 254 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD---------------------------DRRCLRTF 254 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec---------------------------Ccceehhh
Confidence 46777789999999999999999 799999999999999999874 24577889
Q ss_pred ecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCC-CEEEEEECCCcEEEEECCCCc
Q 006220 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQ 496 (656)
Q Consensus 418 ~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~sgs~Dg~i~lwd~~~~~ 496 (656)
.||..+|..++|+++|..++|+|.|++|++||+++|+++..+.. ...+.|+.|+|++ +.|++|+.|+.|+.||+++++
T Consensus 255 ~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k 333 (503)
T KOG0282|consen 255 KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK 333 (503)
T ss_pred hcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchH
Confidence 99999999999999999999999999999999999999998874 5578899999988 889999999999999999999
Q ss_pred eeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEE-----------------------------------
Q 006220 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR----------------------------------- 541 (656)
Q Consensus 497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~----------------------------------- 541 (656)
.++.+..|.+.|..+.|-++|.++++++.|++++||+.+.+..+.
T Consensus 334 vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs 413 (503)
T KOG0282|consen 334 VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFS 413 (503)
T ss_pred HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEe
Confidence 999999999999999999999999999999999999986543221
Q ss_pred -----------EEecCC--CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCC-CCEEEEE
Q 006220 542 -----------IFIGHR--SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCE-GSLLASG 607 (656)
Q Consensus 542 -----------~~~~h~--~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~-~~~l~sg 607 (656)
.|.||. +.-..+.|||||++|++|+.||.+.+||.++.+.+..++.|.+++..+.|+|. ...+|+|
T Consensus 414 ~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~ 493 (503)
T KOG0282|consen 414 TVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATC 493 (503)
T ss_pred cccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEec
Confidence 123554 34567899999999999999999999999999999999999999999999995 5689999
Q ss_pred ECCCcEEEEe
Q 006220 608 SADCTVKLWD 617 (656)
Q Consensus 608 s~Dg~I~iWd 617 (656)
+.||.|++|+
T Consensus 494 ~w~G~Ikiwd 503 (503)
T KOG0282|consen 494 GWDGLIKIWD 503 (503)
T ss_pred ccCceeEecC
Confidence 9999999996
No 25
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-32 Score=254.39 Aligned_cols=275 Identities=24% Similarity=0.386 Sum_probs=238.3
Q ss_pred CCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEee
Q 006220 339 LPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ 418 (656)
Q Consensus 339 ~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 418 (656)
+|......+-.+.+.|..+.|+-||+|.++++.|.+|++|+... +..+..+.
T Consensus 5 ~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~r----------------------------g~liktYs 56 (307)
T KOG0316|consen 5 LPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLR----------------------------GALIKTYS 56 (307)
T ss_pred CcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccc----------------------------cceeeeec
Confidence 45555566778899999999999999999999999999999654 45678899
Q ss_pred cCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCC--Cc
Q 006220 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR--IQ 496 (656)
Q Consensus 419 ~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~--~~ 496 (656)
+|...|..++.+.|+..+++|+.|..|.+||+.+|+.+..+.+|...|+.++|+.+...+++|+.|.++++||.++ .+
T Consensus 57 ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~e 136 (307)
T KOG0316|consen 57 GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFE 136 (307)
T ss_pred CCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999875 57
Q ss_pred eeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (656)
Q Consensus 497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~ 576 (656)
|++++......|.++... +..|++|+.||++|.||++.|+...-..+ .+|+|++|+++|+..++++.|+++++.|-
T Consensus 137 PiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk 212 (307)
T KOG0316|consen 137 PIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDK 212 (307)
T ss_pred ccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeeccc
Confidence 889998888889998874 56899999999999999999998776655 58999999999999999999999999999
Q ss_pred CCCeeeEeeeCCCccEE--EEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCC
Q 006220 577 ASGRCVTPLMGHTSCVW--TLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 646 (656)
Q Consensus 577 ~~~~~~~~~~~h~~~V~--~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~ 646 (656)
.+|+.+..+++|...-+ ..+++.....+++|+.||.|++||+.....+.+....... -+..+...|+..
T Consensus 213 ~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v-~v~dl~~hp~~~ 283 (307)
T KOG0316|consen 213 ETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTV-IVTDLSCHPTMD 283 (307)
T ss_pred chhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCce-eEEeeecccCcc
Confidence 99999999999986544 4456777789999999999999999998877655443221 123444455443
No 26
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7e-32 Score=256.91 Aligned_cols=229 Identities=27% Similarity=0.483 Sum_probs=211.1
Q ss_pred eeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEEC
Q 006220 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM 492 (656)
Q Consensus 413 ~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~ 492 (656)
..++++||.+.|+++.|++|+++++++|.||.+.|||.-+...+..++-...-|..++|+|.|+++|+|+-|....||++
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 44789999999999999999999999999999999999998888888888889999999999999999999999999999
Q ss_pred CCC------ceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcC-CCCEEEEE
Q 006220 493 DRI------QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASG 565 (656)
Q Consensus 493 ~~~------~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp-~g~~L~s~ 565 (656)
.+. ...+.+.+|.+.+.|+.|-+ .+.|+|||.|.++.+||+.+|+.+..|.+|.+.|.++.++| +++.+++|
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg 205 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSG 205 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEec
Confidence 855 35577889999999999987 56899999999999999999999999999999999999999 99999999
Q ss_pred ECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCC
Q 006220 566 DEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK 645 (656)
Q Consensus 566 ~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 645 (656)
+.|+..++||++.+.+++.|.+|...|+++.|.|+|.-+++|+.|+++++||++....+.... .+..
T Consensus 206 ~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys-------------~~~~ 272 (343)
T KOG0286|consen 206 GCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS-------------HDSI 272 (343)
T ss_pred ccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec-------------cCcc
Confidence 999999999999999999999999999999999999999999999999999999977664332 4455
Q ss_pred CCCeEEEEEc
Q 006220 646 STPVYSLQVL 655 (656)
Q Consensus 646 ~~pv~sv~Ft 655 (656)
..+|.+|+|+
T Consensus 273 ~~gitSv~FS 282 (343)
T KOG0286|consen 273 ICGITSVAFS 282 (343)
T ss_pred cCCceeEEEc
Confidence 6778888886
No 27
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-31 Score=282.22 Aligned_cols=262 Identities=26% Similarity=0.479 Sum_probs=229.8
Q ss_pred CCceeEEE-EeeCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEE
Q 006220 339 LPSVSFYT-FINTHNGLNCASISQDGSLVAGGFSD-SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL 416 (656)
Q Consensus 339 ~ps~~~~~-~~~~~~~V~~l~fs~dg~~La~g~~d-g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (656)
+|...+.. +--....|..++|+..|.+||.|+.. |.+-||+++. ...+..
T Consensus 294 lP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs----------------------------EsYVlK 345 (893)
T KOG0291|consen 294 LPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS----------------------------ESYVLK 345 (893)
T ss_pred cCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeec----------------------------cceeee
Confidence 45444433 33345789999999999999999765 8999999985 234556
Q ss_pred eecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 006220 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ 496 (656)
Q Consensus 417 l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~ 496 (656)
.++|...+++++++|||+++++|+.||.|+|||...+-|..++..|++.|+.++|+..|+.+++.|-||+|+.||+....
T Consensus 346 QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr 425 (893)
T KOG0291|consen 346 QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR 425 (893)
T ss_pred ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEecCC-CCCeeEEEEcCCCCEEEEEECCC-cEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 006220 497 PLRIMAGH-LSDVDCVRWHINCNYIATGSSDK-TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW 574 (656)
Q Consensus 497 ~~~~~~~~-~~~V~~v~~~p~~~~l~tgs~dg-~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iw 574 (656)
..+++... .-...|++..|.|..+.+|+.|. .|.+|++++|+.+-.+.||.+||.+++|+|+|..|++++.|.+|++|
T Consensus 426 NfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW 505 (893)
T KOG0291|consen 426 NFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIW 505 (893)
T ss_pred eeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEE
Confidence 99988743 34578999999999999999887 59999999999999999999999999999999999999999999999
Q ss_pred eCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecc
Q 006220 575 DLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTE 628 (656)
Q Consensus 575 D~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~ 628 (656)
|+-.......-..+...+..++|+|+|+.|++++.||.|.+||+..+.....++
T Consensus 506 ~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Id 559 (893)
T KOG0291|consen 506 DIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSID 559 (893)
T ss_pred EeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeecccc
Confidence 986553333333566789999999999999999999999999999887765443
No 28
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.5e-32 Score=293.85 Aligned_cols=264 Identities=30% Similarity=0.571 Sum_probs=233.8
Q ss_pred ccceecCCCCCCc-eeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCC
Q 006220 329 RNRVHLSSAALPS-VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP 407 (656)
Q Consensus 329 ~~~v~l~~~~~ps-~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (656)
.+.+++|...... .....+.+|...|++++|+||++++++|+.|++|+|||+..
T Consensus 180 ~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~------------------------- 234 (456)
T KOG0266|consen 180 DGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD------------------------- 234 (456)
T ss_pred CCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccC-------------------------
Confidence 3445555441111 23444568889999999999999999999999999999842
Q ss_pred CCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcE
Q 006220 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTA 487 (656)
Q Consensus 408 ~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i 487 (656)
.....+.+.+|...|++++|+|+++++++|+.|++|++||+++++++..+.+|..+|.+++|++++++|++++.|+.|
T Consensus 235 --~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i 312 (456)
T KOG0266|consen 235 --DGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTI 312 (456)
T ss_pred --CCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccE
Confidence 135678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCc--eeEEecCCCCC--eeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCC---eEEEEEcCCCC
Q 006220 488 RIWSMDRIQ--PLRIMAGHLSD--VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM---ILSLAMSPDGR 560 (656)
Q Consensus 488 ~lwd~~~~~--~~~~~~~~~~~--V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~---i~~l~~sp~g~ 560 (656)
++||+.++. +...+.++... ++++.|+|++.++++++.|+.+++||++.+.++..+.+|... +.+...++.|.
T Consensus 313 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (456)
T KOG0266|consen 313 RVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGK 392 (456)
T ss_pred EEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCC
Confidence 999999998 56777776666 999999999999999999999999999999999999999874 44455678999
Q ss_pred EEEEEECCCcEEEEeCCCCeeeEeeeCC-CccEEEEEEcCCCCEEEEEE--CCCcEEEEeCC
Q 006220 561 YMASGDEDGTIMMWDLASGRCVTPLMGH-TSCVWTLAYSCEGSLLASGS--ADCTVKLWDVT 619 (656)
Q Consensus 561 ~L~s~~~dg~I~iwD~~~~~~~~~~~~h-~~~V~~l~~s~~~~~l~sgs--~Dg~I~iWd~~ 619 (656)
++++|+.|+.|.+||+.++..+..+.+| ...+..++|++...++++++ .|+.+++|...
T Consensus 393 ~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 393 LIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 9999999999999999999999999999 89999999999999999998 78999999764
No 29
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.5e-32 Score=286.82 Aligned_cols=259 Identities=27% Similarity=0.521 Sum_probs=229.4
Q ss_pred CceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeec
Q 006220 340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419 (656)
Q Consensus 340 ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 419 (656)
|...+..+.+|...|.+++...+|-+||+|+.|.++++|.++.... ....+....+
T Consensus 354 ~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~------------------------~~~~~a~~~g 409 (775)
T KOG0319|consen 354 PTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS------------------------KSLCVAQANG 409 (775)
T ss_pred CCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcc------------------------hhhhhhhhcc
Confidence 3333446778999999999777889999999999999999853211 1224455678
Q ss_pred CccCEEEEEEccCC-CEEEEEeCCCeEEEEeccCCce-----e----EEeeCCCccEEEEEEecCCCEEEEEECCCcEEE
Q 006220 420 HSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNAN-----L----VCYKGHNYPVWDVQFNPQGHYFASSSHDRTARI 489 (656)
Q Consensus 420 h~~~V~~l~~spd~-~~L~s~s~Dg~I~lwd~~~~~~-----~----~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~l 489 (656)
|++.|.+++++..+ .+|+++|.|+++++|++...+. . .....|...|+|++++|+...|+|||.|+++++
T Consensus 410 H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKi 489 (775)
T KOG0319|consen 410 HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKI 489 (775)
T ss_pred cccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceee
Confidence 99999999997755 4899999999999999875211 1 123469999999999999999999999999999
Q ss_pred EECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 006220 490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG 569 (656)
Q Consensus 490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg 569 (656)
|+++......++.||...|.||.|+|+.+.++|+|.|++|+||.+.+..|+.+|.||...|..+.|-.+|..|++++.||
T Consensus 490 W~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adG 569 (775)
T KOG0319|consen 490 WDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADG 569 (775)
T ss_pred ecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220 570 TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 570 ~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
-|++|++.++.|+.++..|...||+++.++.+.+++||+.||.|.+|.=.+..
T Consensus 570 liKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 570 LIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred cEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcHH
Confidence 99999999999999999999999999999999999999999999999765543
No 30
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.3e-31 Score=279.47 Aligned_cols=255 Identities=26% Similarity=0.450 Sum_probs=222.4
Q ss_pred EEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (656)
Q Consensus 345 ~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 424 (656)
+...+|...++|+++||||+++|+|+.||.|+|||... +....++..|++.|
T Consensus 344 lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S----------------------------gfC~vTFteHts~V 395 (893)
T KOG0291|consen 344 LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS----------------------------GFCFVTFTEHTSGV 395 (893)
T ss_pred eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccC----------------------------ceEEEEeccCCCce
Confidence 35568889999999999999999999999999999875 45678899999999
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCC-CccEEEEEEecCCCEEEEEECCC-cEEEEECCCCceeEEec
Q 006220 425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSHDR-TARIWSMDRIQPLRIMA 502 (656)
Q Consensus 425 ~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~l~~sp~~~~l~sgs~Dg-~i~lwd~~~~~~~~~~~ 502 (656)
+.+.|+..++.++++|-||+|+.||+....+.+++... .-...|++..|.|..++.|+.|. .|++|++++++.+.++.
T Consensus 396 t~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs 475 (893)
T KOG0291|consen 396 TAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS 475 (893)
T ss_pred EEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc
Confidence 99999999999999999999999999999998888754 33467888999999999999876 69999999999999999
Q ss_pred CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeee
Q 006220 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582 (656)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~ 582 (656)
||.++|.+++|+|.+..|++||.|.+||+||+-.......-..+...+..++|+|+|+.|++++.||.|.+||...+..+
T Consensus 476 GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 476 GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQV 555 (893)
T ss_pred CCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceee
Confidence 99999999999999999999999999999999755333333346778999999999999999999999999999876655
Q ss_pred Eeee--------------------CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220 583 TPLM--------------------GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 583 ~~~~--------------------~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
..+. ......+++++|+||..+++||..+.|++|++.++-.+.+.
T Consensus 556 ~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkf 620 (893)
T KOG0291|consen 556 GSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKF 620 (893)
T ss_pred ccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeE
Confidence 3332 12357899999999999999999999999999987665443
No 31
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.4e-32 Score=267.37 Aligned_cols=258 Identities=24% Similarity=0.433 Sum_probs=212.0
Q ss_pred CCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEe
Q 006220 338 ALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417 (656)
Q Consensus 338 ~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 417 (656)
..|+.....+..|.+.|+-+.||++|+|||+++.|.+..||.+... ...+...++
T Consensus 211 qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d-------------------------~~~kl~~tl 265 (519)
T KOG0293|consen 211 QIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYD-------------------------VHFKLKKTL 265 (519)
T ss_pred cCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecC-------------------------cceeeeeee
Confidence 4566666678899999999999999999999999999999998641 224567789
Q ss_pred ecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeC-CCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 006220 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ 496 (656)
Q Consensus 418 ~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~ 496 (656)
.+|..+|..+.||||.++|++|+.|..+++||+.++.+...+.. +...+.+++|.|||..|++|+.|+++..||++...
T Consensus 266 vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~ 345 (519)
T KOG0293|consen 266 VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI 345 (519)
T ss_pred ecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch
Confidence 99999999999999999999999999999999999999887763 46789999999999999999999999999998643
Q ss_pred eeEEecC-CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee------------------------------------
Q 006220 497 PLRIMAG-HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC------------------------------------ 539 (656)
Q Consensus 497 ~~~~~~~-~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~------------------------------------ 539 (656)
.....+ ....|.+++..++|+++++.+.|..|++++..+...
T Consensus 346 -~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl 424 (519)
T KOG0293|consen 346 -LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDL 424 (519)
T ss_pred -hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeec
Confidence 222332 235689999999999999888888888887643322
Q ss_pred -----EEEEecCCCC--eEEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcC-CCCEEEEEECC
Q 006220 540 -----VRIFIGHRSM--ILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC-EGSLLASGSAD 610 (656)
Q Consensus 540 -----~~~~~~h~~~--i~~l~~sp-~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~sgs~D 610 (656)
++.+.||... +..-+|-- +..++++|++|+.|+||+..+|+++..+.||...|++++|+| +-.++|++|.|
T Consensus 425 ~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDD 504 (519)
T KOG0293|consen 425 EENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDD 504 (519)
T ss_pred chhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCC
Confidence 2223344432 22223332 346799999999999999999999999999999999999999 55689999999
Q ss_pred CcEEEEeCCCC
Q 006220 611 CTVKLWDVTTS 621 (656)
Q Consensus 611 g~I~iWd~~~~ 621 (656)
|+|+||.....
T Consensus 505 gtIRIWg~~~~ 515 (519)
T KOG0293|consen 505 GTIRIWGPSDN 515 (519)
T ss_pred CeEEEecCCcc
Confidence 99999987653
No 32
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.8e-31 Score=265.46 Aligned_cols=259 Identities=25% Similarity=0.463 Sum_probs=231.6
Q ss_pred ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (656)
..-+++|+. +.-...++..|.++|.++.|+.+|+||++|+.|+++.+||...
T Consensus 256 ~G~~riw~~--~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~-------------------------- 307 (524)
T KOG0273|consen 256 DGEARIWNK--DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT-------------------------- 307 (524)
T ss_pred CcEEEEEec--CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC--------------------------
Confidence 344556643 2333446889999999999999999999999999999999764
Q ss_pred CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEE
Q 006220 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR 488 (656)
Q Consensus 409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~ 488 (656)
+.....+.-|+.+-..|.|-. ...+++++.||.|+|+.+....++.++.+|.++|.++.|+|.|..|+++|.|++++
T Consensus 308 --g~~~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~Tlk 384 (524)
T KOG0273|consen 308 --GTVKQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLK 384 (524)
T ss_pred --ceEEEeeeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeE
Confidence 334555667888878889974 45689999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceeEEecCCCCCeeEEEEcCCC---------CEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCC
Q 006220 489 IWSMDRIQPLRIMAGHLSDVDCVRWHINC---------NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG 559 (656)
Q Consensus 489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~---------~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g 559 (656)
||+.........+.+|...|..+.|+|.| ..+++++.|++|++||+..+.++..|..|..+|.+++|||+|
T Consensus 385 iWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g 464 (524)
T KOG0273|consen 385 IWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNG 464 (524)
T ss_pred eeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCC
Confidence 99999999999999999999999999865 468999999999999999999999999999999999999999
Q ss_pred CEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 560 RYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619 (656)
Q Consensus 560 ~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~ 619 (656)
+++|+|+.||.|.+|++++++.++.+.+. +.|..++|+.+|..|..+-.||.+++-|++
T Consensus 465 ~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 465 RYLASGSLDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cEEEecCCCCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 99999999999999999999999988654 569999999999999999999999999875
No 33
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.8e-30 Score=243.77 Aligned_cols=247 Identities=24% Similarity=0.466 Sum_probs=214.0
Q ss_pred EEEEeeCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220 344 FYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (656)
Q Consensus 344 ~~~~~~~~~~V~~l~fs~d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 422 (656)
..++.+|.+.+..++|+|- |..||+|+.|..|+||+...... -.-....-.+|..
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s------------------------~~ck~vld~~hkr 62 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS------------------------WTCKTVLDDGHKR 62 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc------------------------EEEEEeccccchh
Confidence 4567788889999999998 89999999999999999873100 0111122347999
Q ss_pred CEEEEEEccCCCEEEEEeCCCeEEEEecc--CCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCC---Cce
Q 006220 423 PVYSASFSPLGDFILSSSADTTIRLWSTK--LNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR---IQP 497 (656)
Q Consensus 423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~--~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~---~~~ 497 (656)
.|.+++|+|.|++|++||.|.++.||.-. ..+++..+.||...|.|++|+++|++||+|+.|+.+-+|.++. ..+
T Consensus 63 sVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec 142 (312)
T KOG0645|consen 63 SVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFEC 142 (312)
T ss_pred eeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEE
Confidence 99999999999999999999999999865 3477889999999999999999999999999999999999874 457
Q ss_pred eEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC---CCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 006220 498 LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS---SGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW 574 (656)
Q Consensus 498 ~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~---~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iw 574 (656)
...+.+|..+|..+.|||....|+++|.|.+|++|+-. ...++.++.+|...|.+++|++.|..|++++.|++|+||
T Consensus 143 ~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw 222 (312)
T KOG0645|consen 143 IAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIW 222 (312)
T ss_pred EeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEee
Confidence 78889999999999999999999999999999999876 347899999999999999999999999999999999999
Q ss_pred eCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 575 DLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 575 D~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
-..+.-. ..|+..++.+.|. ...|+|++.|+.|+++.-..
T Consensus 223 ~~~~~~~----~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 223 RLYTDLS----GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESD 262 (312)
T ss_pred eeccCcc----hhcccceEeeeec--ccceEeccCCCEEEEEEecC
Confidence 8653211 2477899999998 55899999999999998774
No 34
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.1e-30 Score=261.50 Aligned_cols=260 Identities=37% Similarity=0.642 Sum_probs=232.9
Q ss_pred ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (656)
...+.+|+..... ....+..|...+.++.|+++++++++++.+|.|++|++...
T Consensus 30 ~g~i~i~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~------------------------- 83 (289)
T cd00200 30 DGTIKVWDLETGE-LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG------------------------- 83 (289)
T ss_pred CcEEEEEEeeCCC-cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc-------------------------
Confidence 4466777654332 34456677888999999999999999999999999998741
Q ss_pred CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEE
Q 006220 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR 488 (656)
Q Consensus 409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~ 488 (656)
.....+..|...|.++.|++++.++++++.||.|++|++.++.....+..|...|.+++|+|++.++++++.|+.++
T Consensus 84 ---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 84 ---ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred ---cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 23344567888999999999988899888899999999998888888888999999999999999998888899999
Q ss_pred EEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 006220 489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED 568 (656)
Q Consensus 489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d 568 (656)
+||+++.+.+..+..|...+.+++|+|+++.+++++.++.|++||+++++.+..+..|...+.+++|+|++.++++++.|
T Consensus 161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 240 (289)
T cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSED 240 (289)
T ss_pred EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCC
Confidence 99999988999998998899999999999999999999999999999999999888899999999999999999998889
Q ss_pred CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220 569 GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617 (656)
Q Consensus 569 g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd 617 (656)
|.|++||+.+++.+..+..|...|.+++|++++.+|++++.||.|++|+
T Consensus 241 ~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 241 GTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9999999999999999999999999999999999999999999999996
No 35
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-31 Score=285.63 Aligned_cols=271 Identities=23% Similarity=0.352 Sum_probs=214.7
Q ss_pred eCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccC------------------CCC-----CC------CC
Q 006220 349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGL------------------QGE-----ND------TT 399 (656)
Q Consensus 349 ~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~------------------~~~-----~~------~~ 399 (656)
.|.+.|+|+.||+||+|||+|+.||.|+||.+............ ... .. ..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 68899999999999999999999999999998762211100000 000 00 00
Q ss_pred C---CccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEec-CC
Q 006220 400 P---REDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QG 475 (656)
Q Consensus 400 ~---~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~~ 475 (656)
. ......+.-....+..+.||.+.|..++||. +.+|+++|.|.|||||++....|+.+|. |..-|+||+|+| |.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence 0 0000011112345667899999999999995 5789999999999999999999999987 999999999999 88
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec--C------C
Q 006220 476 HYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG--H------R 547 (656)
Q Consensus 476 ~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~--h------~ 547 (656)
+||++|+-||.++||++...+.+.....+ .-|++++|.|+|++.++|+.+|.+++|+....+.+..+.- | .
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 99999999999999999887766655544 7899999999999999999999999999988777654431 1 1
Q ss_pred CCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCCeeeEeeeCCC--ccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220 548 SMILSLAMSPDG-RYMASGDEDGTIMMWDLASGRCVTPLMGHT--SCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 548 ~~i~~l~~sp~g-~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~--~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
..|+.+.|.|.. ..+++.+.|..|+|+|.+...++..++|+. ..-....|+.||++|++++.|..|+||++....
T Consensus 502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 279999999843 357777889999999999999999998765 334567899999999999999999999985543
No 36
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.2e-32 Score=266.81 Aligned_cols=260 Identities=27% Similarity=0.563 Sum_probs=227.1
Q ss_pred HHHHhc-cceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCc
Q 006220 324 ILEDLR-NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRE 402 (656)
Q Consensus 324 ~~~~~~-~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~ 402 (656)
++..++ +.+++|+.+. ..|.+.+.+|.+.|.|+.|. .+.+++|++|++|+|||+++
T Consensus 210 iVSGlrDnTikiWD~n~-~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~t-------------------- 266 (499)
T KOG0281|consen 210 IVSGLRDNTIKIWDKNS-LECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNT-------------------- 266 (499)
T ss_pred hhcccccCceEEecccc-HHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccC--------------------
Confidence 344554 4788998643 45667889999999999995 55999999999999999986
Q ss_pred cccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCce---eEEeeCCCccEEEEEEecCCCEEE
Q 006220 403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN---LVCYKGHNYPVWDVQFNPQGHYFA 479 (656)
Q Consensus 403 ~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~---~~~~~~h~~~V~~l~~sp~~~~l~ 479 (656)
+....++.+|...|..+.|+ +.+++++|.|.+|.+||+..... ...+.||...|..+.|+ ..|++
T Consensus 267 --------ge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIV 334 (499)
T KOG0281|consen 267 --------GEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIV 334 (499)
T ss_pred --------CchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEE
Confidence 34566788999999999998 67999999999999999986643 34567999999999996 55999
Q ss_pred EEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCC
Q 006220 480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG 559 (656)
Q Consensus 480 sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g 559 (656)
++|.|++|++|++.+...++++.+|...|.|+.+ +++++++|++|.+||+||+..|.+++.+.||..-|.|+.|. .
T Consensus 335 sASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~ 410 (499)
T KOG0281|consen 335 SASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--N 410 (499)
T ss_pred EecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--C
Confidence 9999999999999999999999999999999986 68899999999999999999999999999999999999996 6
Q ss_pred CEEEEEECCCcEEEEeCCCCe---------eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220 560 RYMASGDEDGTIMMWDLASGR---------CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624 (656)
Q Consensus 560 ~~L~s~~~dg~I~iwD~~~~~---------~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~ 624 (656)
+.+++|+.||+|++||+..+. |+..+..|++.|..+.|. ...+++++.|.+|-|||+..+...
T Consensus 411 krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 411 KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCCcc
Confidence 789999999999999997653 445566799999999995 557999999999999999887654
No 37
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.98 E-value=7.2e-30 Score=298.56 Aligned_cols=255 Identities=18% Similarity=0.357 Sum_probs=217.0
Q ss_pred EeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (656)
Q Consensus 347 ~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 426 (656)
+.+|.+.|++++|+|+|++||+|+.|+.|+||++....... .........+ .+...|.+
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~--------------------~~~~~~~~~~-~~~~~v~~ 537 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDG--------------------RDIHYPVVEL-ASRSKLSG 537 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccc--------------------cccccceEEe-cccCceee
Confidence 34578889999999999999999999999999975310000 0000111222 23468999
Q ss_pred EEEccC-CCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEec-CCCEEEEEECCCcEEEEECCCCceeEEecCC
Q 006220 427 ASFSPL-GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (656)
Q Consensus 427 l~~spd-~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~ 504 (656)
++|++. +.+|++++.||+|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.||+|++||++++..+..+..+
T Consensus 538 l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~ 617 (793)
T PLN00181 538 ICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK 617 (793)
T ss_pred EEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC
Confidence 999874 67999999999999999999999999999999999999997 7899999999999999999998888888755
Q ss_pred CCCeeEEEEc-CCCCEEEEEECCCcEEEEeCCCCe-eEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC----
Q 006220 505 LSDVDCVRWH-INCNYIATGSSDKTVRLWDVSSGE-CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS---- 578 (656)
Q Consensus 505 ~~~V~~v~~~-p~~~~l~tgs~dg~V~iwd~~~~~-~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~---- 578 (656)
..|.++.|+ +++.+|++|+.||.|++||++++. .+..+.+|...|+++.|. ++.+|++++.|+.|++||+..
T Consensus 618 -~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~ 695 (793)
T PLN00181 618 -ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG 695 (793)
T ss_pred -CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc
Confidence 679999995 579999999999999999998875 567788999999999997 678999999999999999974
Q ss_pred --CeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220 579 --GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624 (656)
Q Consensus 579 --~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~ 624 (656)
+.++..+.+|...+..++|++++.+|++|+.||.|++|+.......
T Consensus 696 ~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~ 743 (793)
T PLN00181 696 INETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPV 743 (793)
T ss_pred cCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCce
Confidence 3577888999999999999999999999999999999998766543
No 38
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.98 E-value=4.2e-30 Score=261.69 Aligned_cols=255 Identities=27% Similarity=0.404 Sum_probs=210.1
Q ss_pred EEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEE---eecC
Q 006220 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL---YQGH 420 (656)
Q Consensus 344 ~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~h 420 (656)
..++..|..-|+|+.|||||.++|+.+.||.|.+||=.++. .+.. -.+|
T Consensus 183 k~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge----------------------------~vg~l~~~~aH 234 (603)
T KOG0318|consen 183 KSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE----------------------------KVGELEDSDAH 234 (603)
T ss_pred eecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc----------------------------EEEEecCCCCc
Confidence 34566777889999999999999999999999999955421 2222 3379
Q ss_pred ccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeE-------------------------------------------
Q 006220 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV------------------------------------------- 457 (656)
Q Consensus 421 ~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~------------------------------------------- 457 (656)
.+.|++++|+||+..++++|.|.+++|||+.+..++.
T Consensus 235 kGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~ 314 (603)
T KOG0318|consen 235 KGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLK 314 (603)
T ss_pred cccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhh
Confidence 9999999999999999999999999999987543322
Q ss_pred EeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee-------------------------------EE------
Q 006220 458 CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL-------------------------------RI------ 500 (656)
Q Consensus 458 ~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~-------------------------------~~------ 500 (656)
.+.||...|+++..+|++.+|++|+.||.|.-|+..++..- +.
T Consensus 315 ~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~ 394 (603)
T KOG0318|consen 315 VISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDN 394 (603)
T ss_pred eecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccC
Confidence 24689999999999999999999999999999997533200 00
Q ss_pred ------------------------------------ecCC--------CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 501 ------------------------------------MAGH--------LSDVDCVRWHINCNYIATGSSDKTVRLWDVSS 536 (656)
Q Consensus 501 ------------------------------------~~~~--------~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~ 536 (656)
+..+ .-...+++++|++..+++|+.|+.|++|.+..
T Consensus 395 ~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g 474 (603)
T KOG0318|consen 395 GYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSG 474 (603)
T ss_pred cccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecC
Confidence 0000 01235789999999999999999999999987
Q ss_pred Cee--EEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeE-eeeCCCccEEEEEEcCCCCEEEEEECCCcE
Q 006220 537 GEC--VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT-PLMGHTSCVWTLAYSCEGSLLASGSADCTV 613 (656)
Q Consensus 537 ~~~--~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~-~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I 613 (656)
+.. ......|.++|+++++|||+.|||+|...+.+.+||..+.+... .+.-|+..|.+++|+|++.++|+|+-|.+|
T Consensus 475 ~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~V 554 (603)
T KOG0318|consen 475 DELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNV 554 (603)
T ss_pred CcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceE
Confidence 653 33566799999999999999999999999999999998887633 344599999999999999999999999999
Q ss_pred EEEeCCCCCceee
Q 006220 614 KLWDVTTSTKVLK 626 (656)
Q Consensus 614 ~iWd~~~~~~~~~ 626 (656)
.||++..+.....
T Consensus 555 iiysv~kP~~~i~ 567 (603)
T KOG0318|consen 555 IIYSVKKPAKHII 567 (603)
T ss_pred EEEEccChhhheE
Confidence 9999998776533
No 39
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=2.4e-32 Score=262.45 Aligned_cols=250 Identities=26% Similarity=0.382 Sum_probs=221.4
Q ss_pred eeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEE
Q 006220 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (656)
Q Consensus 348 ~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 427 (656)
++..+.+-|..|||||+||++|+.||.|.||+..+++..... ..+.-..+.-+..+|.|+
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDL--------------------kYQAqd~fMMmd~aVlci 269 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDL--------------------KYQAQDNFMMMDDAVLCI 269 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhh--------------------hhhhhcceeecccceEEE
Confidence 455667899999999999999999999999998864432211 111223355688999999
Q ss_pred EEccCCCEEEEEeCCCeEEEEeccCCceeEEee-CCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCC
Q 006220 428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS 506 (656)
Q Consensus 428 ~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~ 506 (656)
+||.|...|++|+.||.|++|.+.+|.|+..+. .|+..|+|+.|+.|+..+++++.|.++++.-+.+++++..+.||.+
T Consensus 270 ~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsS 349 (508)
T KOG0275|consen 270 SFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSS 349 (508)
T ss_pred eecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccc
Confidence 999999999999999999999999999999987 7999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec-----------------------------------------
Q 006220 507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG----------------------------------------- 545 (656)
Q Consensus 507 ~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~----------------------------------------- 545 (656)
.|+...|.++|+++++++.||+|++|+.++++|+.+|+.
T Consensus 350 yvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrs 429 (508)
T KOG0275|consen 350 YVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRS 429 (508)
T ss_pred cccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEee
Confidence 999999999999999999999999999988777655431
Q ss_pred ------CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220 546 ------HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617 (656)
Q Consensus 546 ------h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd 617 (656)
..+...+.+.||.|.++++.++|+.++.|...+|+.-.++..|...|..++-+|..+.+++-+.||.+++|.
T Consensus 430 fsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 430 FSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 123345677899999999999999999999999999999999999999999999999999999999999995
No 40
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.98 E-value=1e-29 Score=248.91 Aligned_cols=246 Identities=20% Similarity=0.341 Sum_probs=225.3
Q ss_pred EEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (656)
Q Consensus 345 ~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 424 (656)
.+|..|...|.+++.+|+.+++|+|+.|..-.||++.+ +.....+.+|...|
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~----------------------------ge~~~eltgHKDSV 109 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDIST----------------------------GEFAGELTGHKDSV 109 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccC----------------------------CcceeEecCCCCce
Confidence 47889999999999999999999999999999999875 22456688999999
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCC
Q 006220 425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (656)
Q Consensus 425 ~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~ 504 (656)
+++.||.+|.+|++|+.+|.|+||...++.....+......|.=+.|+|.++.|+.|+.||.+-.|.+.+......+.||
T Consensus 110 t~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh 189 (399)
T KOG0296|consen 110 TCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGH 189 (399)
T ss_pred EEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCC
Confidence 99999999999999999999999999999888887655667777999999999999999999999999998889999999
Q ss_pred CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe----------------------------------------
Q 006220 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI---------------------------------------- 544 (656)
Q Consensus 505 ~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~---------------------------------------- 544 (656)
..+++|-.|.|+|+.+++|..||+|++||..+++++..+.
T Consensus 190 ~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~ 269 (399)
T KOG0296|consen 190 NSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN 269 (399)
T ss_pred CCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEE
Confidence 9999999999999999999999999999998887654322
Q ss_pred -------------------------------------------------------cCCCCeEEEEEcCCCCEEEEEECCC
Q 006220 545 -------------------------------------------------------GHRSMILSLAMSPDGRYMASGDEDG 569 (656)
Q Consensus 545 -------------------------------------------------------~h~~~i~~l~~sp~g~~L~s~~~dg 569 (656)
.|..+|+.+.|-+ ..+|++++.+|
T Consensus 270 ~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g 348 (399)
T KOG0296|consen 270 CNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANG 348 (399)
T ss_pred ecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCc
Confidence 3667788888988 68999999999
Q ss_pred cEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 570 TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619 (656)
Q Consensus 570 ~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~ 619 (656)
.|+.||.++|+++..+.+|...|.+++++|+.++++|+|.|++.+|+++.
T Consensus 349 ~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 349 KVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999999999999999999999999999999999999999874
No 41
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=5.1e-31 Score=246.48 Aligned_cols=261 Identities=26% Similarity=0.435 Sum_probs=225.0
Q ss_pred ceecCCC-CCCceeEEEEeeCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220 331 RVHLSSA-ALPSVSFYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (656)
Q Consensus 331 ~v~l~~~-~~ps~~~~~~~~~~~~V~~l~fs~d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (656)
++.+-+. ..+.+....-....+++..++||++ .+.+++++.||+++|||+...
T Consensus 39 ~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~------------------------- 93 (311)
T KOG0277|consen 39 RLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP------------------------- 93 (311)
T ss_pred eEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCC-------------------------
Confidence 4454444 3567777777888899999999986 667888899999999996531
Q ss_pred CCceeeEEeecCccCEEEEEEccCC-CEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEec-CCCEEEEEECCCc
Q 006220 409 GRKRSYTLYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRT 486 (656)
Q Consensus 409 ~~~~~~~~l~~h~~~V~~l~~spd~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~ 486 (656)
..++..++.|...|+++.|++.. +.++++|.|++|++|+......+.++.+|...|...+|+| .++.|+++|.|++
T Consensus 94 --s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 94 --SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred --CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 23566788999999999999865 4678889999999999999999999999999999999999 6789999999999
Q ss_pred EEEEECCCCceeEEecCCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCC-eeEEEEecCCCCeEEEEEcCCC-CEEE
Q 006220 487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPDG-RYMA 563 (656)
Q Consensus 487 i~lwd~~~~~~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~-~~~~~~~~h~~~i~~l~~sp~g-~~L~ 563 (656)
+++||++..-....+..|...+.|+.|+. +.+.++||+.|+.||.||+++- .++..+.+|.-.|..++|||.. ..|+
T Consensus 172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLa 251 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLA 251 (311)
T ss_pred EEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhh
Confidence 99999987655555888999999999996 7788999999999999999974 5678889999999999999964 6899
Q ss_pred EEECCCcEEEEeCCCC-eeeEeeeCCCccEEEEEEcC-CCCEEEEEECCCcEEEEeC
Q 006220 564 SGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYSC-EGSLLASGSADCTVKLWDV 618 (656)
Q Consensus 564 s~~~dg~I~iwD~~~~-~~~~~~~~h~~~V~~l~~s~-~~~~l~sgs~Dg~I~iWd~ 618 (656)
+++.|-+++|||...+ .++.+...|+..|..+.||+ ++.++|+++.|+.++||+-
T Consensus 252 SasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 252 SASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 9999999999998744 45666778999999999998 5779999999999999984
No 42
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.7e-30 Score=268.81 Aligned_cols=249 Identities=23% Similarity=0.414 Sum_probs=229.6
Q ss_pred EeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (656)
Q Consensus 347 ~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 426 (656)
+..+...|.|+.|+|...+++++-.+|.|.||+.++. ..+..+.-..-||.+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetq----------------------------tmVksfeV~~~PvRa 60 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ----------------------------TMVKSFEVSEVPVRA 60 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccc----------------------------eeeeeeeecccchhh
Confidence 4557788999999999999999999999999998862 233445556678999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCC-ceeEEecCCC
Q 006220 427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAGHL 505 (656)
Q Consensus 427 l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~-~~~~~~~~~~ 505 (656)
..|-+-.+++++|+.|..|++|+..+++.+..+..|..-|.+++.+|...+++++|.|-+|++||.+.. .+.+++.||.
T Consensus 61 ~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~ 140 (794)
T KOG0276|consen 61 AKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHE 140 (794)
T ss_pred heeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999865 5778999999
Q ss_pred CCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCC--CEEEEEECCCcEEEEeCCCCeee
Q 006220 506 SDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDG--RYMASGDEDGTIMMWDLASGRCV 582 (656)
Q Consensus 506 ~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g--~~L~s~~~dg~I~iwD~~~~~~~ 582 (656)
.-|.+++|+| +.+.+++++-|++|++|.+.+..+..++.+|...|+|+.+-+-| .+|++|++|..|+|||..+..|+
T Consensus 141 HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV 220 (794)
T KOG0276|consen 141 HYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV 220 (794)
T ss_pred eEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHH
Confidence 9999999999 56899999999999999999999999999999999999999855 59999999999999999999999
Q ss_pred EeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCc
Q 006220 583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (656)
Q Consensus 583 ~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~ 623 (656)
.++.||...|..+.|+|.-.+++||+.||+++||.-.+-+.
T Consensus 221 ~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l 261 (794)
T KOG0276|consen 221 QTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL 261 (794)
T ss_pred HHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceeh
Confidence 99999999999999999999999999999999999877543
No 43
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.6e-30 Score=274.41 Aligned_cols=254 Identities=24% Similarity=0.445 Sum_probs=223.9
Q ss_pred EEeeCCCCeEEEEE-cCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220 346 TFINTHNGLNCASI-SQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (656)
Q Consensus 346 ~~~~~~~~V~~l~f-s~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 424 (656)
.+.+.++.|..++| .|+.++||+++..+.+|+|++.+ ..+..+.||+..|
T Consensus 318 ~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~-----------------------------~~c~ii~GH~e~v 368 (775)
T KOG0319|consen 318 QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPT-----------------------------SYCQIIPGHTEAV 368 (775)
T ss_pred hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCC-----------------------------CceEEEeCchhhe
Confidence 45677788998887 57889999999999999998764 2344788999999
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEeccCCc----eeEEeeCCCccEEEEEEecCC-CEEEEEECCCcEEEEECCCCcee-
Q 006220 425 YSASFSPLGDFILSSSADTTIRLWSTKLNA----NLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPL- 498 (656)
Q Consensus 425 ~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~----~~~~~~~h~~~V~~l~~sp~~-~~l~sgs~Dg~i~lwd~~~~~~~- 498 (656)
.++....+|.+|+|||.|.++++|.++.+. ++....+|...|.+++++..+ .+|+++|.|+++++|++...+..
T Consensus 369 lSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~ 448 (775)
T KOG0319|consen 369 LSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETA 448 (775)
T ss_pred eeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccc
Confidence 999966678899999999999999885443 345678899999999997744 57899999999999999762211
Q ss_pred --E------EecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCc
Q 006220 499 --R------IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT 570 (656)
Q Consensus 499 --~------~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~ 570 (656)
. ....|..+|+|++.+|+...+||||.|++.+||++.++....++.||+..|.|+.|+|..+.++|++.|++
T Consensus 449 ~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~T 528 (775)
T KOG0319|consen 449 FPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKT 528 (775)
T ss_pred ccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCce
Confidence 1 23479999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecc
Q 006220 571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTE 628 (656)
Q Consensus 571 I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~ 628 (656)
|+||.+.+..|++++.||+..|..+.|-.+|+.|+|+++||-|++|++.++++.....
T Consensus 529 vKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD 586 (775)
T KOG0319|consen 529 VKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD 586 (775)
T ss_pred EEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999988765443
No 44
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2e-29 Score=238.05 Aligned_cols=260 Identities=19% Similarity=0.325 Sum_probs=218.9
Q ss_pred hccceecCCCC-CCceeEEEEe--eCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccc
Q 006220 328 LRNRVHLSSAA-LPSVSFYTFI--NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI 404 (656)
Q Consensus 328 ~~~~v~l~~~~-~ps~~~~~~~--~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 404 (656)
-.+++++|+.. ..+..+.+.+ +|...|.+++|+|.|++||+|+-|+++.||.-..
T Consensus 35 ~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~---------------------- 92 (312)
T KOG0645|consen 35 TDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKED---------------------- 92 (312)
T ss_pred CCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCC----------------------
Confidence 35678888766 3345554443 5778899999999999999999999999998542
Q ss_pred cCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCC---ceeEEeeCCCccEEEEEEecCCCEEEEE
Q 006220 405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN---ANLVCYKGHNYPVWDVQFNPQGHYFASS 481 (656)
Q Consensus 405 ~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~---~~~~~~~~h~~~V~~l~~sp~~~~l~sg 481 (656)
+.......+.||...|.|++|+++|++|++|+.|.+|-||.+..+ .+...++.|...|..+.|+|....|+++
T Consensus 93 ----~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~ 168 (312)
T KOG0645|consen 93 ----GEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSC 168 (312)
T ss_pred ----CceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEe
Confidence 234567889999999999999999999999999999999998743 5677889999999999999999999999
Q ss_pred ECCCcEEEEECC---CCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCC
Q 006220 482 SHDRTARIWSMD---RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD 558 (656)
Q Consensus 482 s~Dg~i~lwd~~---~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~ 558 (656)
|.|.+|++|+-. .-.++..+.+|.+.|.+++|+++|..|++++.|++|+||-..+.-. ..|+.++..+.|.
T Consensus 169 SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~v~W~-- 242 (312)
T KOG0645|consen 169 SYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----GMHSRALYDVPWD-- 242 (312)
T ss_pred ccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----hhcccceEeeeec--
Confidence 999999999866 3357889999999999999999999999999999999998663211 2377899999998
Q ss_pred CCEEEEEECCCcEEEEeCCCC------eeeE-eeeCCCccEEEEEEcCC-CCEEEEEECCCcEEEEeCC
Q 006220 559 GRYMASGDEDGTIMMWDLASG------RCVT-PLMGHTSCVWTLAYSCE-GSLLASGSADCTVKLWDVT 619 (656)
Q Consensus 559 g~~L~s~~~dg~I~iwD~~~~------~~~~-~~~~h~~~V~~l~~s~~-~~~l~sgs~Dg~I~iWd~~ 619 (656)
...|++++.|+.|++|.-..+ +.+. .-..|...|+++.|+|. .+.|++|+.||.|++|.+.
T Consensus 243 ~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 243 NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 568999999999999976542 1111 23468889999999994 7899999999999999874
No 45
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=3.7e-29 Score=272.46 Aligned_cols=287 Identities=17% Similarity=0.263 Sum_probs=218.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (656)
Q Consensus 352 ~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 431 (656)
..|+....++|+..+++++.+.....|+...... ...... .+........+.+|.++|++++|+|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~--v~~~~~-------------~G~~~~~~~~l~GH~~~V~~v~fsP 85 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTA--VLKHTD-------------YGKLASNPPILLGQEGPIIDVAFNP 85 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceE--Eeeccc-------------cccCCCCCceEeCCCCCEEEEEEcC
Confidence 3566777788877778787888888898654221 100000 0000112234779999999999999
Q ss_pred -CCCEEEEEeCCCeEEEEeccCC-------ceeEEeeCCCccEEEEEEecCC-CEEEEEECCCcEEEEECCCCceeEEec
Q 006220 432 -LGDFILSSSADTTIRLWSTKLN-------ANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQPLRIMA 502 (656)
Q Consensus 432 -d~~~L~s~s~Dg~I~lwd~~~~-------~~~~~~~~h~~~V~~l~~sp~~-~~l~sgs~Dg~i~lwd~~~~~~~~~~~ 502 (656)
++++|++|+.||+|++||+.++ ..+..+.+|...|.+++|+|++ ++|++|+.|++|++||+++++.+..+.
T Consensus 86 ~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~ 165 (493)
T PTZ00421 86 FDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK 165 (493)
T ss_pred CCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc
Confidence 7889999999999999999764 3467788999999999999975 799999999999999999999999999
Q ss_pred CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCC-eEEEEEcCCCCEEEEEE----CCCcEEEEeCC
Q 006220 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM-ILSLAMSPDGRYMASGD----EDGTIMMWDLA 577 (656)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~-i~~l~~sp~g~~L~s~~----~dg~I~iwD~~ 577 (656)
+|...|.+++|+|++.+|++|+.|++|++||+++++.+..+.+|.+. +..+.|.+++..+++++ .|+.|++||++
T Consensus 166 ~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr 245 (493)
T PTZ00421 166 CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR 245 (493)
T ss_pred CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence 99999999999999999999999999999999999999999999765 45678999888877654 47899999998
Q ss_pred CCe-eeEeeeCCC-ccEEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEE
Q 006220 578 SGR-CVTPLMGHT-SCVWTLAYSCEGSLLASGS-ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQV 654 (656)
Q Consensus 578 ~~~-~~~~~~~h~-~~V~~l~~s~~~~~l~sgs-~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~F 654 (656)
+.. ++.....+. ..+....|++++++|++|+ .||.|++||+.++......... .......+...|...--|..+.+
T Consensus 246 ~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~-s~~~~~g~~~~pk~~~dv~~~Ei 324 (493)
T PTZ00421 246 KMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS-SVEPHKGLCMMPKWSLDTRKCEI 324 (493)
T ss_pred CCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc-CCCCCcceEecccccccccceee
Confidence 754 343333333 4566678999999999888 5999999999987755433221 12223344444544444444443
No 46
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=1.2e-30 Score=254.23 Aligned_cols=216 Identities=27% Similarity=0.519 Sum_probs=207.1
Q ss_pred ceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEE
Q 006220 411 KRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIW 490 (656)
Q Consensus 411 ~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lw 490 (656)
.+..+.+.+|.+.|.|+++.|-+.+|++|+.|++|+|||+.+++...++.||-..|..+++|+-..|+++++.|+.|+.|
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCc
Q 006220 491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT 570 (656)
Q Consensus 491 d~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~ 570 (656)
|++..+.++.+.||.+.|.|++.||.-..|++|+.|.++|+||+++...+..+.||..+|.++.+.|-...+++|+.|++
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t 300 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST 300 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred EEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220 571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 571 I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
|++||++.|+....+..|...|.+++.+|....+|+++.| .|+-|++..+......
T Consensus 301 vrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nl 356 (460)
T KOG0285|consen 301 VRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNL 356 (460)
T ss_pred EEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhcc
Confidence 9999999999999999999999999999999999999988 6999999988776653
No 47
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=2.1e-29 Score=234.92 Aligned_cols=244 Identities=23% Similarity=0.410 Sum_probs=211.0
Q ss_pred HHhccceecCCCCCCce-eEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccc
Q 006220 326 EDLRNRVHLSSAALPSV-SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI 404 (656)
Q Consensus 326 ~~~~~~v~l~~~~~ps~-~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 404 (656)
......+++++....+. +..+|-+|.+.|+++.|..||+++.+|+.||+++|||+...
T Consensus 57 aa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~--------------------- 115 (311)
T KOG0315|consen 57 AAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL--------------------- 115 (311)
T ss_pred hccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCc---------------------
Confidence 34445667766544433 67788999999999999999999999999999999999851
Q ss_pred cCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEe-eCCCccEEEEEEecCCCEEEEEEC
Q 006220 405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY-KGHNYPVWDVQFNPQGHYFASSSH 483 (656)
Q Consensus 405 ~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~-~~h~~~V~~l~~sp~~~~l~sgs~ 483 (656)
.+.....|.++|+++..+|+...|++|..+|.|++||+....+...+ .....+|.++...|+|.+++.+..
T Consensus 116 --------~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn 187 (311)
T KOG0315|consen 116 --------SCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN 187 (311)
T ss_pred --------ccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC
Confidence 22334457899999999999999999999999999999987665443 334568999999999999999999
Q ss_pred CCcEEEEECCC------CceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC-eeEEEEecCCCCeEEEEEc
Q 006220 484 DRTARIWSMDR------IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMS 556 (656)
Q Consensus 484 Dg~i~lwd~~~------~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~-~~~~~~~~h~~~i~~l~~s 556 (656)
.|++++|++-+ ..|+..+..|.+.+..+.++|+++||+++|.|.+++||+..+. +....+.+|...+...+||
T Consensus 188 kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS 267 (311)
T KOG0315|consen 188 KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFS 267 (311)
T ss_pred CccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeec
Confidence 99999999854 3467778899999999999999999999999999999999887 6667889999999999999
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEc
Q 006220 557 PDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYS 598 (656)
Q Consensus 557 p~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s 598 (656)
.||.||++|+.|+.+++||+..++.+..+.+|..+..+++..
T Consensus 268 ~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 268 ADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred cCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 999999999999999999999999999999998877777653
No 48
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.7e-30 Score=275.08 Aligned_cols=250 Identities=25% Similarity=0.461 Sum_probs=227.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (656)
Q Consensus 350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 429 (656)
....|..++|+|...++.++-..|.|++||..- +..+..+..|.|||.++.|
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM----------------------------~tli~rFdeHdGpVRgv~F 59 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRM----------------------------GTLIDRFDEHDGPVRGVDF 59 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhh----------------------------hhHHhhhhccCCccceeee
Confidence 456799999999999999999999999999874 2345667889999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCee
Q 006220 430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVD 509 (656)
Q Consensus 430 spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~ 509 (656)
+|++.+++||+.|-.|++|+.++.+++.++.||-..|..+.|++.-..++++|.|.+|+||+..+++++..+.||...|.
T Consensus 60 H~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVM 139 (1202)
T KOG0292|consen 60 HPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVM 139 (1202)
T ss_pred cCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCC--------C-------------------e--eEEEEecCCCCeEEEEEcCCCC
Q 006220 510 CVRWHINCNYIATGSSDKTVRLWDVSS--------G-------------------E--CVRIFIGHRSMILSLAMSPDGR 560 (656)
Q Consensus 510 ~v~~~p~~~~l~tgs~dg~V~iwd~~~--------~-------------------~--~~~~~~~h~~~i~~l~~sp~g~ 560 (656)
|..|||....++++|-|.+||+||+.. + . ...++.||...|+.++|+|.-.
T Consensus 140 cAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp 219 (1202)
T KOG0292|consen 140 CAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP 219 (1202)
T ss_pred eeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc
Confidence 999999999999999999999999842 1 0 1134679999999999999999
Q ss_pred EEEEEECCCcEEEEeCCCCe--eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220 561 YMASGDEDGTIMMWDLASGR--CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 561 ~L~s~~~dg~I~iwD~~~~~--~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
+|++|++|..|++|.+...+ .+-++++|.+.|.++-|+|...+++|.|.|++|+|||+...+.+...
T Consensus 220 liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 220 LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeee
Confidence 99999999999999986544 45567899999999999999999999999999999999988877655
No 49
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=9.4e-29 Score=289.19 Aligned_cols=240 Identities=23% Similarity=0.377 Sum_probs=209.0
Q ss_pred eCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEE
Q 006220 349 NTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (656)
Q Consensus 349 ~~~~~V~~l~fs~-dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 427 (656)
.+...|.+++|++ ++.+||+|+.||.|+|||+.+ ......+.+|.+.|+++
T Consensus 530 ~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~----------------------------~~~~~~~~~H~~~V~~l 581 (793)
T PLN00181 530 ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR----------------------------SQLVTEMKEHEKRVWSI 581 (793)
T ss_pred cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC----------------------------CeEEEEecCCCCCEEEE
Confidence 3456799999987 478999999999999999874 23456677899999999
Q ss_pred EEcc-CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEe-cCCCEEEEEECCCcEEEEECCCCc-eeEEecCC
Q 006220 428 SFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN-PQGHYFASSSHDRTARIWSMDRIQ-PLRIMAGH 504 (656)
Q Consensus 428 ~~sp-d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~s-p~~~~l~sgs~Dg~i~lwd~~~~~-~~~~~~~~ 504 (656)
+|+| ++.+|++|+.||+|++||+.++..+..+..+ ..|.++.|+ ++|.+|++|+.||+|++||+++.+ ++..+.+|
T Consensus 582 ~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h 660 (793)
T PLN00181 582 DYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGH 660 (793)
T ss_pred EEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCC
Confidence 9997 7889999999999999999999888888755 579999995 479999999999999999998765 56778899
Q ss_pred CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC------CeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSS------GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (656)
Q Consensus 505 ~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~------~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~ 578 (656)
...|.++.|. ++.+|++++.|++|++||++. +.++..+.+|...+.+++|+|++.+|++|+.||.|++|+...
T Consensus 661 ~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~ 739 (793)
T PLN00181 661 SKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAF 739 (793)
T ss_pred CCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCC
Confidence 9999999997 678999999999999999974 357888999999999999999999999999999999999876
Q ss_pred CeeeEee-------------eCCCccEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220 579 GRCVTPL-------------MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618 (656)
Q Consensus 579 ~~~~~~~-------------~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~ 618 (656)
...+..+ ..|...|.+++|++++..|++|+.||.|+||++
T Consensus 740 ~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 740 PMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 5443222 234567999999999999999999999999997
No 50
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.8e-29 Score=269.81 Aligned_cols=266 Identities=24% Similarity=0.418 Sum_probs=233.3
Q ss_pred ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (656)
...|++|+-.. .++.-.|..|.++|..++|+|++.++++|+.|-.|+||+...
T Consensus 30 sG~IQlWDYRM-~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~-------------------------- 82 (1202)
T KOG0292|consen 30 SGVIQLWDYRM-GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT-------------------------- 82 (1202)
T ss_pred Cceeeeehhhh-hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc--------------------------
Confidence 45677886433 234456889999999999999999999999999999999875
Q ss_pred CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEE
Q 006220 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR 488 (656)
Q Consensus 409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~ 488 (656)
.+..-++.||-.-|..+.|++.-.+++|+|.|.||+||+..+++++.++.||+..|.|.+|+|....++++|-|.+|+
T Consensus 83 --rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVR 160 (1202)
T KOG0292|consen 83 --RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVR 160 (1202)
T ss_pred --ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEE
Confidence 445667889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCc-----------------------------eeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCe-
Q 006220 489 IWSMDRIQ-----------------------------PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE- 538 (656)
Q Consensus 489 lwd~~~~~-----------------------------~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~- 538 (656)
+||+..-+ ...++.||...|+.++|||.-..|++|+.|+.|++|.....+
T Consensus 161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa 240 (1202)
T KOG0292|consen 161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 240 (1202)
T ss_pred EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc
Confidence 99985210 124567999999999999999999999999999999987544
Q ss_pred -eEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220 539 -CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617 (656)
Q Consensus 539 -~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd 617 (656)
.+-+..+|.+.|+++-|+|...++++.|+|++|+|||+...+.+.+++...+..|.++-+|..+++++|. |+-+.||.
T Consensus 241 WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFk 319 (1202)
T KOG0292|consen 241 WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFK 319 (1202)
T ss_pred eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEE
Confidence 3456789999999999999999999999999999999999999999988888999999999999777664 66677888
Q ss_pred CCCCCce
Q 006220 618 VTTSTKV 624 (656)
Q Consensus 618 ~~~~~~~ 624 (656)
+....+.
T Consensus 320 leRErpa 326 (1202)
T KOG0292|consen 320 LERERPA 326 (1202)
T ss_pred EcccCce
Confidence 8755443
No 51
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=4.7e-29 Score=238.64 Aligned_cols=263 Identities=24% Similarity=0.407 Sum_probs=234.7
Q ss_pred HHhccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCcccc
Q 006220 326 EDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405 (656)
Q Consensus 326 ~~~~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (656)
....+.|.||+..-.-..+.++.+|.+.|..+.|.+|++.|++++.|.+|+.||+.+
T Consensus 65 gG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t----------------------- 121 (338)
T KOG0265|consen 65 GGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET----------------------- 121 (338)
T ss_pred cCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc-----------------------
Confidence 345677889987666666778889999999999999999999999999999999986
Q ss_pred CCCCCceeeEEeecCccCEEEEEEccCCC-EEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECC
Q 006220 406 GPNGRKRSYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD 484 (656)
Q Consensus 406 ~~~~~~~~~~~l~~h~~~V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D 484 (656)
++..+...+|.+-|.++.-+.-|. ++.||+.||++++||++...+++.+. ...+++++.|...+..+.+|+-|
T Consensus 122 -----G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggId 195 (338)
T KOG0265|consen 122 -----GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGID 195 (338)
T ss_pred -----ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeecccc
Confidence 456677889999999998554454 56799999999999999888887775 46789999999999999999999
Q ss_pred CcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC----CeeEEEEecCCC----CeEEEEEc
Q 006220 485 RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS----GECVRIFIGHRS----MILSLAMS 556 (656)
Q Consensus 485 g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~----~~~~~~~~~h~~----~i~~l~~s 556 (656)
+.|++||++......++.||...|+.+..+|+|.++.+-+.|.++++||++. ..++..+.+|.. .....+|+
T Consensus 196 n~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csws 275 (338)
T KOG0265|consen 196 NDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWS 275 (338)
T ss_pred CceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeecc
Confidence 9999999999999999999999999999999999999999999999999984 456888888754 35668899
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220 557 PDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617 (656)
Q Consensus 557 p~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd 617 (656)
|++..+.+|+.|..+++||..+...+..+.||.+.|.+++|+|...+|.+++.|.+|++=.
T Consensus 276 p~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 276 PNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred CCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 9999999999999999999999899999999999999999999999999999999998643
No 52
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=2e-29 Score=241.37 Aligned_cols=264 Identities=25% Similarity=0.449 Sum_probs=214.1
Q ss_pred EEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccC-CCCCceeeEEeecCcc
Q 006220 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG-PNGRKRSYTLYQGHSG 422 (656)
Q Consensus 344 ~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~h~~ 422 (656)
-.++..|.+.+.|.+||+||.++|+|+.|..|+|.|+...-.... ..+.+.. .......++++..|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~-----------~~em~~~~~qa~hPvIRTlYDH~d 173 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSK-----------PKEMISGDTQARHPVIRTLYDHVD 173 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcc-----------hhhhccCCcccCCceEeehhhccC
Confidence 345678899999999999999999999999999999874211100 0000111 1122457788999999
Q ss_pred CEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEee--CCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEE
Q 006220 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI 500 (656)
Q Consensus 423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~ 500 (656)
+|+++.|+|....|++|+.|++|++||.........++ ....+|.++.|+|.|.++++|....++++||+.+.++...
T Consensus 174 evn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs 253 (430)
T KOG0640|consen 174 EVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS 253 (430)
T ss_pred cccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee
Confidence 99999999999999999999999999987543332222 2467899999999999999999999999999999877654
Q ss_pred ec---CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe-cCC-CCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220 501 MA---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHR-SMILSLAMSPDGRYMASGDEDGTIMMWD 575 (656)
Q Consensus 501 ~~---~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~-~h~-~~i~~l~~sp~g~~L~s~~~dg~I~iwD 575 (656)
-. .|.+.|++|.++++++..+||+.||.|++||--+++|++++. .|. +.|.+..|..+|+|+++.+.|..+++|.
T Consensus 254 anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWE 333 (430)
T KOG0640|consen 254 ANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWE 333 (430)
T ss_pred cCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeee
Confidence 33 788999999999999999999999999999999999998875 454 4688999999999999999999999999
Q ss_pred CCCCeeeEeee-------------------------------------------------CCCccEEEEEEcCCCCEEEE
Q 006220 576 LASGRCVTPLM-------------------------------------------------GHTSCVWTLAYSCEGSLLAS 606 (656)
Q Consensus 576 ~~~~~~~~~~~-------------------------------------------------~h~~~V~~l~~s~~~~~l~s 606 (656)
+.+++++..+. +|++.+..+.-||.+..+++
T Consensus 334 i~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmT 413 (430)
T KOG0640|consen 334 ISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMT 413 (430)
T ss_pred ecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceee
Confidence 99888776542 46666777777777777777
Q ss_pred EECCCcEEEEeC
Q 006220 607 GSADCTVKLWDV 618 (656)
Q Consensus 607 gs~Dg~I~iWd~ 618 (656)
|+.|-.+++|--
T Consensus 414 csdD~raRFWyr 425 (430)
T KOG0640|consen 414 CSDDFRARFWYR 425 (430)
T ss_pred ecccceeeeeee
Confidence 777777777753
No 53
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.3e-28 Score=231.84 Aligned_cols=247 Identities=23% Similarity=0.372 Sum_probs=219.4
Q ss_pred EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
.+.+|..+++-+.|+.+|.+|.+++.|..+.||--.. +..+-.+.||++.|+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n----------------------------GerlGty~GHtGavW 56 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN----------------------------GERLGTYDGHTGAVW 56 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecC----------------------------CceeeeecCCCceEE
Confidence 3578999999999999999999999999999997533 346677899999999
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC-----CCcEEEEECC-------
Q 006220 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-----DRTARIWSMD------- 493 (656)
Q Consensus 426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~-----Dg~i~lwd~~------- 493 (656)
|+..+.+.+.+++|+.|.++++||+.+|+++..++ ...+|..+.|+++|++++.+.. .+.|.++|++
T Consensus 57 ~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~ 135 (327)
T KOG0643|consen 57 CCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDID 135 (327)
T ss_pred EEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhc
Confidence 99999999999999999999999999999999988 4678999999999999888763 4689999998
Q ss_pred CCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC-eeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEE
Q 006220 494 RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572 (656)
Q Consensus 494 ~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~-~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~ 572 (656)
...|...+..+.+.++.+-|.|-+.+|++|..||.|.+||+++| +.+..-..|...|+.|++++|..++++++.|.+-+
T Consensus 136 s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttak 215 (327)
T KOG0643|consen 136 SEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAK 215 (327)
T ss_pred ccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccce
Confidence 45678888888899999999999999999999999999999998 55666678999999999999999999999999999
Q ss_pred EEeCCCCeeeE-------------------------------------------------------eeeCCCccEEEEEE
Q 006220 573 MWDLASGRCVT-------------------------------------------------------PLMGHTSCVWTLAY 597 (656)
Q Consensus 573 iwD~~~~~~~~-------------------------------------------------------~~~~h~~~V~~l~~ 597 (656)
+||..+..+++ ++++|-++|++++|
T Consensus 216 l~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAf 295 (327)
T KOG0643|consen 216 LVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAF 295 (327)
T ss_pred eeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEE
Confidence 99986543322 23678899999999
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCC
Q 006220 598 SCEGSLLASGSADCTVKLWDVTTS 621 (656)
Q Consensus 598 s~~~~~l~sgs~Dg~I~iWd~~~~ 621 (656)
+|+|+..+||+.||.|++.-+...
T Consensus 296 hPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 296 HPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred CCCCcccccCCCCceEEEEEeccc
Confidence 999999999999999999876553
No 54
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=4.9e-28 Score=264.79 Aligned_cols=225 Identities=19% Similarity=0.327 Sum_probs=184.9
Q ss_pred EeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccC-CCEEEEEeCCCeEEE
Q 006220 369 GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL-GDFILSSSADTTIRL 447 (656)
Q Consensus 369 g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd-~~~L~s~s~Dg~I~l 447 (656)
|+.++.|++|+... ......+.+|.++|.+++|+|+ +.+|++|+.||+|++
T Consensus 50 GG~~gvI~L~~~~r----------------------------~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrI 101 (568)
T PTZ00420 50 GGLIGAIRLENQMR----------------------------KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRV 101 (568)
T ss_pred CCceeEEEeeecCC----------------------------CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEE
Confidence 55678899998653 2345678899999999999997 789999999999999
Q ss_pred EeccCCc--------eeEEeeCCCccEEEEEEecCCCE-EEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCC
Q 006220 448 WSTKLNA--------NLVCYKGHNYPVWDVQFNPQGHY-FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCN 518 (656)
Q Consensus 448 wd~~~~~--------~~~~~~~h~~~V~~l~~sp~~~~-l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~ 518 (656)
||+.++. .+..+.+|...|.+++|+|++.. +++++.|++|++||+++++.+..+. |...|.+++|+|+|.
T Consensus 102 WDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~ 180 (568)
T PTZ00420 102 WEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGN 180 (568)
T ss_pred EECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCC
Confidence 9997642 24467889999999999998876 5789999999999999988777765 567899999999999
Q ss_pred EEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEE-----EEcCCCCEEEEEECCC----cEEEEeCCC-CeeeEeeeC-
Q 006220 519 YIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSL-----AMSPDGRYMASGDEDG----TIMMWDLAS-GRCVTPLMG- 587 (656)
Q Consensus 519 ~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l-----~~sp~g~~L~s~~~dg----~I~iwD~~~-~~~~~~~~~- 587 (656)
+|++++.|+.|++||+++++.+..+.+|.+.+.+. .|++++.+|++++.|+ .|+|||++. ++++..+..
T Consensus 181 lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld 260 (568)
T PTZ00420 181 LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID 260 (568)
T ss_pred EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec
Confidence 99999999999999999999999999998865432 3568899999988774 799999985 556655443
Q ss_pred -CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220 588 -HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 588 -h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
+.+.+......++|.++++|+.|++|++|++..+.
T Consensus 261 ~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 261 NASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred CCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence 33444444445678999999999999999997753
No 55
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.7e-29 Score=260.03 Aligned_cols=265 Identities=25% Similarity=0.432 Sum_probs=233.8
Q ss_pred hccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCC
Q 006220 328 LRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP 407 (656)
Q Consensus 328 ~~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (656)
....+.+|+-.... ....|.-..-+|.++.|-.-.+++++|+.|..|+||+..+
T Consensus 33 ynG~V~IWnyetqt-mVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt------------------------- 86 (794)
T KOG0276|consen 33 YNGDVQIWNYETQT-MVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT------------------------- 86 (794)
T ss_pred ecCeeEEEecccce-eeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc-------------------------
Confidence 34577888754332 2234556677899999999999999999999999999986
Q ss_pred CCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccC-CceeEEeeCCCccEEEEEEec-CCCEEEEEECCC
Q 006220 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL-NANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDR 485 (656)
Q Consensus 408 ~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~-~~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg 485 (656)
...+..+..|+.-|.|++.+|...+++|+|.|-+|++||.+. +.+.+++.||..-|.+++|+| |.+.|++++-|+
T Consensus 87 ---~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr 163 (794)
T KOG0276|consen 87 ---GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR 163 (794)
T ss_pred ---ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence 456788999999999999999999999999999999999874 577889999999999999999 678899999999
Q ss_pred cEEEEECCCCceeEEecCCCCCeeEEEEcCCC--CEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEE
Q 006220 486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHINC--NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMA 563 (656)
Q Consensus 486 ~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~--~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~ 563 (656)
+|++|.+.+..+..++.+|...|+|+.|-+-| .||++|+.|.+|++||.++..|++++.||...|+++.|+|.-..++
T Consensus 164 TVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiii 243 (794)
T KOG0276|consen 164 TVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIII 243 (794)
T ss_pred cEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEE
Confidence 99999999999999999999999999998744 6999999999999999999999999999999999999999999999
Q ss_pred EEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220 564 SGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 564 s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
+|++||+++||...+-+...++.-.-+.|++++-.+.+..++.|...|.|. ..+....
T Consensus 244 sgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~-v~lgree 301 (794)
T KOG0276|consen 244 SGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT-VKLGREE 301 (794)
T ss_pred EecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE-EEccCCC
Confidence 999999999999999888888877778999999999888888887777653 3444333
No 56
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.7e-28 Score=241.40 Aligned_cols=264 Identities=24% Similarity=0.460 Sum_probs=221.4
Q ss_pred hccceecCCCCCCceeEEEEeeCCCCeEEEEEcC-C--CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccc
Q 006220 328 LRNRVHLSSAALPSVSFYTFINTHNGLNCASISQ-D--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI 404 (656)
Q Consensus 328 ~~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~-d--g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 404 (656)
+....++|+. ...+.++..+|.+.|.+++|-. + ...+++++.|.++++|.++.....
T Consensus 123 YDg~~riWd~--~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~------------------ 182 (423)
T KOG0313|consen 123 YDGTSRIWDL--KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK------------------ 182 (423)
T ss_pred cCCeeEEEec--CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh------------------
Confidence 3445566654 4456678899999999887743 2 346999999999999998752211
Q ss_pred cCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEecc-------------------------CCceeEEe
Q 006220 405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK-------------------------LNANLVCY 459 (656)
Q Consensus 405 ~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~-------------------------~~~~~~~~ 459 (656)
........||..+|-+++..++|..+++||.|.+|.+|+.. ++.++..+
T Consensus 183 ------~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl 256 (423)
T KOG0313|consen 183 ------VKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL 256 (423)
T ss_pred ------hhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe
Confidence 11222334999999999999999999999999999999921 23446778
Q ss_pred eCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCe-
Q 006220 460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE- 538 (656)
Q Consensus 460 ~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~- 538 (656)
.||..+|.++.|++ ...++++|.|.+|+.||+.++..+..+.+. ..++|+..+|..+.|++|+.|..+|+||.+++.
T Consensus 257 ~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g 334 (423)
T KOG0313|consen 257 EGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG 334 (423)
T ss_pred cccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCCCceeecCCCCCCC
Confidence 89999999999998 678999999999999999999988887754 679999999999999999999999999999763
Q ss_pred --eEEEEecCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCCe-eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEE
Q 006220 539 --CVRIFIGHRSMILSLAMSPDG-RYMASGDEDGTIMMWDLASGR-CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVK 614 (656)
Q Consensus 539 --~~~~~~~h~~~i~~l~~sp~g-~~L~s~~~dg~I~iwD~~~~~-~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~ 614 (656)
....|.+|.+.|.++.|+|.. ..|++|+.||++++||+++.+ ++..+.+|...|.++.|+ ++..+++||.|++|+
T Consensus 335 s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~ 413 (423)
T KOG0313|consen 335 SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLR 413 (423)
T ss_pred ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEE
Confidence 456789999999999999965 568899999999999999987 999999999999999997 556899999999999
Q ss_pred EEeCCC
Q 006220 615 LWDVTT 620 (656)
Q Consensus 615 iWd~~~ 620 (656)
|+.-..
T Consensus 414 i~~~~~ 419 (423)
T KOG0313|consen 414 IFKGSP 419 (423)
T ss_pred Eecccc
Confidence 987543
No 57
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.8e-28 Score=241.11 Aligned_cols=260 Identities=29% Similarity=0.499 Sum_probs=218.0
Q ss_pred eCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEE
Q 006220 349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (656)
Q Consensus 349 ~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 428 (656)
-|.+-|.++... +.++++|+.||.++||+... .....+.||+++|.+++
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G-----------------------------k~~~~~~Ght~~ik~v~ 151 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG-----------------------------KSIKTIVGHTGPIKSVA 151 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCC-----------------------------ceEEEEecCCcceeeeE
Confidence 456667777776 78999999999999999773 56677889999999988
Q ss_pred EccCCC---EEEEEeCCCeEEEEeccCCce----eEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECC--------
Q 006220 429 FSPLGD---FILSSSADTTIRLWSTKLNAN----LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD-------- 493 (656)
Q Consensus 429 ~spd~~---~L~s~s~Dg~I~lwd~~~~~~----~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~-------- 493 (656)
|.-.+. .|+++|.|.++++|-.+.+.. +...+||..+|-+++..++|..|++|+.|.++.+|+..
T Consensus 152 ~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E 231 (423)
T KOG0313|consen 152 WVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELE 231 (423)
T ss_pred EEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCcccccc
Confidence 865444 599999999999999887654 34456999999999999999999999999999999932
Q ss_pred -----------------CCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEc
Q 006220 494 -----------------RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMS 556 (656)
Q Consensus 494 -----------------~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~s 556 (656)
++.|+..+.||..+|.+|.|++ ...+++++.|.+|+.||+.++.++..+.+. ..+.|+..+
T Consensus 232 ~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~ 309 (423)
T KOG0313|consen 232 SSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYS 309 (423)
T ss_pred ccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC-cceeEeecc
Confidence 2346778889999999999998 678999999999999999999999887754 569999999
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCe---eeEeeeCCCccEEEEEEcCC-CCEEEEEECCCcEEEEeCCCCCceeecccccC
Q 006220 557 PDGRYMASGDEDGTIMMWDLASGR---CVTPLMGHTSCVWTLAYSCE-GSLLASGSADCTVKLWDVTTSTKVLKTEEKSG 632 (656)
Q Consensus 557 p~g~~L~s~~~dg~I~iwD~~~~~---~~~~~~~h~~~V~~l~~s~~-~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~ 632 (656)
|..++|++|+.|..|++||.+++. ...++.+|++-|.++.|+|. ..+|++|+.||++++||+++...
T Consensus 310 ~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~--------- 380 (423)
T KOG0313|consen 310 PLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA--------- 380 (423)
T ss_pred cccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCC---------
Confidence 999999999999999999998763 44677899999999999995 45789999999999999998652
Q ss_pred CccccccccccCCCCCeEEEEEc
Q 006220 633 TNRLRSLKTLPTKSTPVYSLQVL 655 (656)
Q Consensus 633 ~~~~~~l~~~p~~~~pv~sv~Ft 655 (656)
.|+.+.++...|.++.++
T Consensus 381 -----plydI~~h~DKvl~vdW~ 398 (423)
T KOG0313|consen 381 -----PLYDIAGHNDKVLSVDWN 398 (423)
T ss_pred -----cceeeccCCceEEEEecc
Confidence 234444555555555543
No 58
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=5.4e-28 Score=227.11 Aligned_cols=268 Identities=21% Similarity=0.370 Sum_probs=230.4
Q ss_pred EeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (656)
Q Consensus 347 ~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 426 (656)
+.+|...|.+++|+.+|..||+|+.|++++||++.... ...-....+|.+.|-.
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r--------------------------~~~~~~~~gh~~svdq 69 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR--------------------------FRKELVYRGHTDSVDQ 69 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchh--------------------------hhhhhcccCCCcchhh
Confidence 45667789999999999999999999999999998531 1122346689999999
Q ss_pred EEEccCC-CEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCC
Q 006220 427 ASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL 505 (656)
Q Consensus 427 l~~spd~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~ 505 (656)
++|+|.. ..|++++.|.+|++||++.+++..........| -+.|+|+|.++++++.|..|.+.|.++.+.+.... ..
T Consensus 70 l~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~ 147 (313)
T KOG1407|consen 70 LCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FK 147 (313)
T ss_pred heeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-cc
Confidence 9999855 589999999999999999999998887665555 58899999999999999999999999887776554 44
Q ss_pred CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEee
Q 006220 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL 585 (656)
Q Consensus 506 ~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~ 585 (656)
..+.-++|+.++++++..+..|+|.|.....-+++..++.|...+.||.|+|+|+++|+|+.|-.+.+||+...-|+..+
T Consensus 148 ~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i 227 (313)
T KOG1407|consen 148 FEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI 227 (313)
T ss_pred ceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheee
Confidence 56788899977777777777899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCC
Q 006220 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTK 645 (656)
Q Consensus 586 ~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 645 (656)
..+.-+|..++||.+|++||+|+.|-.|-|=++.+|.++...+.... ...+++-|..
T Consensus 228 sRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~---t~tVAWHPk~ 284 (313)
T KOG1407|consen 228 SRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGP---TFTVAWHPKR 284 (313)
T ss_pred ccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCC---ceeEEecCCC
Confidence 99999999999999999999999999999999999999887654322 2344455544
No 59
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=2.9e-27 Score=241.06 Aligned_cols=251 Identities=24% Similarity=0.380 Sum_probs=217.0
Q ss_pred EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
.+.+|...++-..|||.|-|+|+|...|.||||+..... ...-..++.-.++|.
T Consensus 54 iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~--------------------------hiLKnef~v~aG~I~ 107 (603)
T KOG0318|consen 54 IYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKE--------------------------HILKNEFQVLAGPIK 107 (603)
T ss_pred eeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcc--------------------------eeeeeeeeecccccc
Confidence 345667789999999999999999999999999986411 122234555679999
Q ss_pred EEEEccCCCEEEEEeCC----CeEEEEeccCCceeEEeeCCCccEEEEEEecCCC-EEEEEECCCcEEEEECCCCceeEE
Q 006220 426 SASFSPLGDFILSSSAD----TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDRTARIWSMDRIQPLRI 500 (656)
Q Consensus 426 ~l~~spd~~~L~s~s~D----g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~sgs~Dg~i~lwd~~~~~~~~~ 500 (656)
.++|+++++.+++.++. |.+.+|| ++..+-.+.||...|.++.|-|... .++||+.|+++.+|.-.-.+-...
T Consensus 108 Di~Wd~ds~RI~avGEGrerfg~~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s 185 (603)
T KOG0318|consen 108 DISWDFDSKRIAAVGEGRERFGHVFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSS 185 (603)
T ss_pred cceeCCCCcEEEEEecCccceeEEEEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeec
Confidence 99999999988877653 3455555 5788889999999999999999654 599999999999998776677777
Q ss_pred ecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe---cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI---GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (656)
Q Consensus 501 ~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~---~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~ 577 (656)
+..|..-|.|+.|+|+|..+++.+.||+|.+||=.+|+.+..+. +|.+.|.+++|+||+..+++++.|.+++|||+.
T Consensus 186 ~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs 265 (603)
T KOG0318|consen 186 FREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVS 265 (603)
T ss_pred ccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEee
Confidence 88999999999999999999999999999999999999999998 899999999999999999999999999999987
Q ss_pred CCeeeE-------------------------------------------eeeCCCccEEEEEEcCCCCEEEEEECCCcEE
Q 006220 578 SGRCVT-------------------------------------------PLMGHTSCVWTLAYSCEGSLLASGSADCTVK 614 (656)
Q Consensus 578 ~~~~~~-------------------------------------------~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~ 614 (656)
+.+++. .+.+|...|+++..++++++|++|+.||.|.
T Consensus 266 ~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~ 345 (603)
T KOG0318|consen 266 TNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHIN 345 (603)
T ss_pred ccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEE
Confidence 654433 2358999999999999999999999999999
Q ss_pred EEeCCCCCce
Q 006220 615 LWDVTTSTKV 624 (656)
Q Consensus 615 iWd~~~~~~~ 624 (656)
-|+..++..-
T Consensus 346 ~W~~~~g~~~ 355 (603)
T KOG0318|consen 346 SWDSGSGTSD 355 (603)
T ss_pred EEecCCcccc
Confidence 9999987754
No 60
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=2.1e-29 Score=254.82 Aligned_cols=214 Identities=30% Similarity=0.518 Sum_probs=190.8
Q ss_pred ceeeEEeecCccCEEEEEEcc-CCCEEEEEeCCCeEEEEeccC-CceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEE
Q 006220 411 KRSYTLYQGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTKL-NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR 488 (656)
Q Consensus 411 ~~~~~~l~~h~~~V~~l~~sp-d~~~L~s~s~Dg~I~lwd~~~-~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~ 488 (656)
......+.||+..|+++.|.| .+.+|++|+.|+.|+||++-. +.++.+|.+|..+|.+++|+++|..|+++|.|+.++
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK 283 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence 456678999999999999999 788999999999999999876 889999999999999999999999999999999999
Q ss_pred EEECCCCceeEEecCCCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 006220 489 IWSMDRIQPLRIMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (656)
Q Consensus 489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~-~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~ 567 (656)
+||+++++++..+.. ...++|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|+.+++.++
T Consensus 284 lwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 284 LWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 999999999988873 4678999999988 88999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCeee----------------------------------------------EeeeCCC--ccEEEEEEcC
Q 006220 568 DGTIMMWDLASGRCV----------------------------------------------TPLMGHT--SCVWTLAYSC 599 (656)
Q Consensus 568 dg~I~iwD~~~~~~~----------------------------------------------~~~~~h~--~~V~~l~~s~ 599 (656)
|++++||+.+..-.+ +.+.+|. +.-..+.|||
T Consensus 363 dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp 442 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP 442 (503)
T ss_pred CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC
Confidence 999999997643211 1124554 4456789999
Q ss_pred CCCEEEEEECCCcEEEEeCCCCCcee
Q 006220 600 EGSLLASGSADCTVKLWDVTTSTKVL 625 (656)
Q Consensus 600 ~~~~l~sgs~Dg~I~iWd~~~~~~~~ 625 (656)
||.+|++|+.||.+.+||.++.+.+.
T Consensus 443 DG~~l~SGdsdG~v~~wdwkt~kl~~ 468 (503)
T KOG0282|consen 443 DGRTLCSGDSDGKVNFWDWKTTKLVS 468 (503)
T ss_pred CCCeEEeecCCccEEEeechhhhhhh
Confidence 99999999999999999998866443
No 61
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1e-27 Score=261.41 Aligned_cols=263 Identities=27% Similarity=0.480 Sum_probs=235.9
Q ss_pred hccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCC
Q 006220 328 LRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP 407 (656)
Q Consensus 328 ~~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (656)
....+++|+......+.-.+.+|.++|++++|..-+.+|++|+.|.+++|||+.+
T Consensus 226 ~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s------------------------- 280 (537)
T KOG0274|consen 226 DDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST------------------------- 280 (537)
T ss_pred CCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC-------------------------
Confidence 3456677876655555555999999999999988889999999999999999775
Q ss_pred CCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcE
Q 006220 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTA 487 (656)
Q Consensus 408 ~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i 487 (656)
+.....+.+|.+.|.++... ...+++||.|.+|++|++.++.++..+.+|..+|.++..+ +.++++|+.|++|
T Consensus 281 ---g~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v 353 (537)
T KOG0274|consen 281 ---GECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTV 353 (537)
T ss_pred ---CcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceE
Confidence 45677888999999999886 4578889999999999999999999999999999999997 8899999999999
Q ss_pred EEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC-eeEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 006220 488 RIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPDGRYMASGD 566 (656)
Q Consensus 488 ~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~-~~~~~~~~h~~~i~~l~~sp~g~~L~s~~ 566 (656)
++||+.+++++..+.+|...|.++.+.+. +++++|+.|++|++||+++. +|+.++.+|.+-+..+.+. +++|++++
T Consensus 354 ~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~--~~~Lvs~~ 430 (537)
T KOG0274|consen 354 KVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR--DNFLVSSS 430 (537)
T ss_pred EEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc--cceeEecc
Confidence 99999999999999999999999988765 89999999999999999999 9999999999988777664 78999999
Q ss_pred CCCcEEEEeCCCCeeeEeeeC-CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220 567 EDGTIMMWDLASGRCVTPLMG-HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 567 ~dg~I~iwD~~~~~~~~~~~~-h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
.||.|++||..+++++..+.+ |.+.|+.+++. ...+++++.||++++||+.+++.....
T Consensus 431 aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 431 ADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred ccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 999999999999999999998 67899999887 467899999999999999998877644
No 62
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.2e-27 Score=225.23 Aligned_cols=253 Identities=23% Similarity=0.340 Sum_probs=215.4
Q ss_pred EeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (656)
Q Consensus 347 ~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 426 (656)
|....+.|+++.|+++|.+|++++.|..++|||... +........+.-.|..
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~----------------------------g~~~~ti~skkyG~~~ 61 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS----------------------------GKQVKTINSKKYGVDL 61 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCC----------------------------CceeeEeecccccccE
Confidence 344567899999999999999999999999999875 2344555556667888
Q ss_pred EEEccCCCEEEEEeC--CCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCC
Q 006220 427 ASFSPLGDFILSSSA--DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (656)
Q Consensus 427 l~~spd~~~L~s~s~--Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~ 504 (656)
++|......++.++. |.+||.-++.+.+.++.+.||...|.+++.+|-+..|++++.|++|++||++..++...+..
T Consensus 62 ~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~- 140 (311)
T KOG1446|consen 62 ACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL- 140 (311)
T ss_pred EEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec-
Confidence 888877777777776 88999999999999999999999999999999999999999999999999998888777653
Q ss_pred CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC--eeEEEEe---cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG--ECVRIFI---GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579 (656)
Q Consensus 505 ~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~--~~~~~~~---~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~ 579 (656)
..-..++|.|.|-++|++.....|++||++.- .+..+|. +.....+.|.|||||++|+.++..+.+.+.|.-+|
T Consensus 141 -~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G 219 (311)
T KOG1446|consen 141 -SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG 219 (311)
T ss_pred -CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC
Confidence 33456789999999999988889999999863 4444444 33567899999999999999999999999999999
Q ss_pred eeeEeeeCCCcc---EEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeeccc
Q 006220 580 RCVTPLMGHTSC---VWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE 629 (656)
Q Consensus 580 ~~~~~~~~h~~~---V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~ 629 (656)
....++.++... -.+.+|+||++++++|+.||+|.+|++.++.++.....
T Consensus 220 ~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 220 TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 999988876632 25788999999999999999999999999988766544
No 63
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=1.1e-27 Score=241.32 Aligned_cols=263 Identities=27% Similarity=0.432 Sum_probs=218.0
Q ss_pred CceeEEEEeeCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEee
Q 006220 340 PSVSFYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ 418 (656)
Q Consensus 340 ps~~~~~~~~~~~~V~~l~fs~d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 418 (656)
+.+.....+.|.+.|+.+.+-|. ..++|+++..+.|.|||......... ..+....-..+.
T Consensus 113 ~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~------------------~~~~~~Pdl~L~ 174 (422)
T KOG0264|consen 113 GKVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPK------------------ASGECRPDLRLK 174 (422)
T ss_pred cceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccc------------------ccccCCCceEEE
Confidence 34556667899999999999986 56677888899999999875321111 001233446788
Q ss_pred cCccCEEEEEEccCCC-EEEEEeCCCeEEEEeccCCce-------eEEeeCCCccEEEEEEec-CCCEEEEEECCCcEEE
Q 006220 419 GHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNAN-------LVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARI 489 (656)
Q Consensus 419 ~h~~~V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~-------~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~l 489 (656)
||.+.-++++|++... .|++|+.|++|++||+..... ...+.+|...|.+++|++ +...|++++.|+.+.|
T Consensus 175 gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~i 254 (422)
T KOG0264|consen 175 GHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMI 254 (422)
T ss_pred eecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEE
Confidence 9999899999999765 799999999999999875432 467889999999999999 5678999999999999
Q ss_pred EECC--CCceeEEecCCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCC-eeEEEEecCCCCeEEEEEcCCC-CEEEE
Q 006220 490 WSMD--RIQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPDG-RYMAS 564 (656)
Q Consensus 490 wd~~--~~~~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~-~~~~~~~~h~~~i~~l~~sp~g-~~L~s 564 (656)
||++ +.++.....+|.+.|.|++|+| ++..|||||.|++|.+||+|+- .++.++.+|...|.++.|||+. ..||+
T Consensus 255 wD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLAS 334 (422)
T KOG0264|consen 255 WDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLAS 334 (422)
T ss_pred EEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEe
Confidence 9999 6677788889999999999999 6677899999999999999974 5788999999999999999964 58899
Q ss_pred EECCCcEEEEeCCCC--------------eeeEeeeCCCccEEEEEEcCCCC-EEEEEECCCcEEEEeCCC
Q 006220 565 GDEDGTIMMWDLASG--------------RCVTPLMGHTSCVWTLAYSCEGS-LLASGSADCTVKLWDVTT 620 (656)
Q Consensus 565 ~~~dg~I~iwD~~~~--------------~~~~~~~~h~~~V~~l~~s~~~~-~l~sgs~Dg~I~iWd~~~ 620 (656)
++.|+.+.|||+..- +++..-.||...|..++|+|+.. .|+|.+.|+.+.||++..
T Consensus 335 Sg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 335 SGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 999999999999642 23455568999999999999765 578889999999999874
No 64
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=1.5e-27 Score=262.76 Aligned_cols=268 Identities=23% Similarity=0.404 Sum_probs=222.6
Q ss_pred EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
+...|.+.|+|+.|||||++||+|+.|+.|.||.......... .+..+.. ..-...+.+..+.+|.+.|.
T Consensus 64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~-fgs~g~~---------~~vE~wk~~~~l~~H~~DV~ 133 (942)
T KOG0973|consen 64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTV-FGSTGGA---------KNVESWKVVSILRGHDSDVL 133 (942)
T ss_pred eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCccc-ccccccc---------cccceeeEEEEEecCCCccc
Confidence 5678899999999999999999999999999999874110000 0000000 01122457788999999999
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCC
Q 006220 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL 505 (656)
Q Consensus 426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~ 505 (656)
.++|+|++.+|++++.|++|.+|+..++..+..+.+|.+.|-++.|.|-|+|||+-+.|++|++|++.+....+.+.++.
T Consensus 134 Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf 213 (942)
T KOG0973|consen 134 DVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPF 213 (942)
T ss_pred eeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999988776766666443
Q ss_pred ------CCeeEEEEcCCCCEEEEEE----CCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCC-------------CC--
Q 006220 506 ------SDVDCVRWHINCNYIATGS----SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD-------------GR-- 560 (656)
Q Consensus 506 ------~~V~~v~~~p~~~~l~tgs----~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~-------------g~-- 560 (656)
..+..+.|+|+|.+|++.. .-.++.|.+..+.+.-..+.||.+++.++.|+|. +.
T Consensus 214 ~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~ 293 (942)
T KOG0973|consen 214 EESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCY 293 (942)
T ss_pred hhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcc
Confidence 3467899999999999854 2347889998888888899999999999999981 11
Q ss_pred --EEEEEECCCcEEEEeCCCCeeeEeeeC-CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCc
Q 006220 561 --YMASGDEDGTIMMWDLASGRCVTPLMG-HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (656)
Q Consensus 561 --~L~s~~~dg~I~iwD~~~~~~~~~~~~-h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~ 623 (656)
.+|+|+.|++|.||.....+++..... ....|..++|+|||-.|+.+|.||+|.+..+...+.
T Consensus 294 y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 294 YCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred eEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 678899999999999988777765542 347899999999999999999999999999986543
No 65
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.5e-27 Score=228.16 Aligned_cols=246 Identities=23% Similarity=0.393 Sum_probs=211.0
Q ss_pred EEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (656)
Q Consensus 344 ~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 423 (656)
.|.+..|.++|+|++. ++.++|+|+.|-+|+|||+.. ......+..|.+.
T Consensus 36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k----------------------------~~qlg~ll~Hags 85 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRK----------------------------RKQLGILLSHAGS 85 (362)
T ss_pred cccccccccceeEEEe--cceeEeccCCCCcEEEEeccc----------------------------hhhhcceeccccc
Confidence 5678889999999998 589999999999999999985 2344556779999
Q ss_pred EEEEEEccCCC--EEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 006220 424 VYSASFSPLGD--FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (656)
Q Consensus 424 V~~l~~spd~~--~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~ 501 (656)
|+++.|.++.. +|++|+.||.|.+|+...+.++..+++|...|+.++.+|.|.+-++.+.|+.++.||+-+++.-...
T Consensus 86 itaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~ 165 (362)
T KOG0294|consen 86 ITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL 165 (362)
T ss_pred eEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceee
Confidence 99999999775 8999999999999999999999999999999999999999999999999999999999887765555
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCee
Q 006220 502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC 581 (656)
Q Consensus 502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~ 581 (656)
.-. ..-+.|.|+|.|.+++.++.+ .|-+|.+.+....+.+.. ...+.|+.|- ++..|++|++|+.|.+||..++.+
T Consensus 166 ~L~-~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~ 241 (362)
T KOG0294|consen 166 NLK-NKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTP 241 (362)
T ss_pred ccC-CcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCCCcc
Confidence 422 233459999999999988765 688999887766554432 2457777775 567899999999999999999999
Q ss_pred eEeeeCCCccEEEEEE--cCCCCEEEEEECCCcEEEEeCCCCCc
Q 006220 582 VTPLMGHTSCVWTLAY--SCEGSLLASGSADCTVKLWDVTTSTK 623 (656)
Q Consensus 582 ~~~~~~h~~~V~~l~~--s~~~~~l~sgs~Dg~I~iWd~~~~~~ 623 (656)
...+.+|...|.++.+ .|++.+|+|+|.||.|+|||++...+
T Consensus 242 ~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k 285 (362)
T KOG0294|consen 242 LTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETK 285 (362)
T ss_pred ceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccccc
Confidence 9999999999999985 66789999999999999999988744
No 66
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.7e-27 Score=241.50 Aligned_cols=262 Identities=22% Similarity=0.344 Sum_probs=218.6
Q ss_pred ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (656)
..|++|++...-+.. -++......|.+++|-.||++||+|...|.|+|||+.+
T Consensus 47 S~rvqly~~~~~~~~-k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-------------------------- 99 (487)
T KOG0310|consen 47 SVRVQLYSSVTRSVR-KTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-------------------------- 99 (487)
T ss_pred ccEEEEEecchhhhh-hhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc--------------------------
Confidence 345555543322211 13445567899999999999999999999999999653
Q ss_pred CCceeeEEeecCccCEEEEEEccCCC-EEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEec-CCCEEEEEECCCc
Q 006220 409 GRKRSYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRT 486 (656)
Q Consensus 409 ~~~~~~~~l~~h~~~V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~ 486 (656)
....+.+.+|+.+|..+.|+|.+. .|++|+.|+.+++||+.+......+.+|+..|.|.+|+| +++.++|||.||+
T Consensus 100 --r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~ 177 (487)
T KOG0310|consen 100 --RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGK 177 (487)
T ss_pred --HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCce
Confidence 235567889999999999999665 678999999999999998887668899999999999999 5668999999999
Q ss_pred EEEEECCCC-ceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee-EEEEecCCCCeEEEEEcCCCCEEEE
Q 006220 487 ARIWSMDRI-QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGRYMAS 564 (656)
Q Consensus 487 i~lwd~~~~-~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~-~~~~~~h~~~i~~l~~sp~g~~L~s 564 (656)
|++||++.. ..+..+ .|..+|..+.+-|+|..|++++ ...|++||+.+|.. +..+..|...|+|+++..++..|++
T Consensus 178 vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS 255 (487)
T KOG0310|consen 178 VRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLS 255 (487)
T ss_pred EEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEee
Confidence 999999987 555555 4889999999999999999886 45899999996654 4444459999999999999999999
Q ss_pred EECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220 565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 565 ~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
|+-||.|++||+.+.+.+..+. ..++|.+++.+|+++.++.|..||.+.+=+....+
T Consensus 256 ~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 256 GSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKK 312 (487)
T ss_pred cccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhhccc
Confidence 9999999999998888888874 56899999999999999999999998887554433
No 67
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=2.9e-27 Score=236.04 Aligned_cols=238 Identities=24% Similarity=0.419 Sum_probs=214.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (656)
Q Consensus 352 ~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 431 (656)
.+++++...+..+.+++|+.|..+.++|... .+....+.||...|+.+.|+|
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s----------------------------~q~l~~~~Gh~kki~~v~~~~ 271 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPS----------------------------NQILATLKGHTKKITSVKFHK 271 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecch----------------------------hhhhhhccCcceEEEEEEecc
Confidence 3578888888888999999999999999764 346677899999999999999
Q ss_pred CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCC--CCCee
Q 006220 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH--LSDVD 509 (656)
Q Consensus 432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~--~~~V~ 509 (656)
+...+++++.|..|++|+.....+......|..+|+.+..+|.|.||++++.||+..+.|++++..+...... .-.++
T Consensus 272 ~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~t 351 (506)
T KOG0289|consen 272 DLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYT 351 (506)
T ss_pred chhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeE
Confidence 9999999999999999999988888888999999999999999999999999999999999999888776642 34589
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCC
Q 006220 510 CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT 589 (656)
Q Consensus 510 ~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~ 589 (656)
+.+|||||..+.+|+.||.|+|||+.++..+..|.+|.++|..|+|+.+|-||+++++|+.|++||++..+.+.++....
T Consensus 352 s~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~ 431 (506)
T KOG0289|consen 352 SAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE 431 (506)
T ss_pred EeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888776443
Q ss_pred -ccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220 590 -SCVWTLAYSCEGSLLASGSADCTVKLWD 617 (656)
Q Consensus 590 -~~V~~l~~s~~~~~l~sgs~Dg~I~iWd 617 (656)
..|.+++|.+.|++|+.+|.|=.|++++
T Consensus 432 ~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 432 KKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred cccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 4799999999999999998775555555
No 68
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=1.5e-26 Score=252.04 Aligned_cols=233 Identities=16% Similarity=0.219 Sum_probs=193.1
Q ss_pred EeeCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 347 FINTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 347 ~~~~~~~V~~l~fs~-dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
+.+|.+.|++++|+| ++++||+|+.||.|+||++....... ........+.+|...|.
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~---------------------~~~~~l~~L~gH~~~V~ 129 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ---------------------NISDPIVHLQGHTKKVG 129 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc---------------------ccCcceEEecCCCCcEE
Confidence 578899999999999 89999999999999999987521100 01124556889999999
Q ss_pred EEEEccCC-CEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCC
Q 006220 426 SASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (656)
Q Consensus 426 ~l~~spd~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~ 504 (656)
+++|+|++ .+|++|+.|++|+|||+.++..+..+.+|...|.+++|+|+|.+|++|+.|++|++||+++++.+..+.+|
T Consensus 130 ~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H 209 (493)
T PTZ00421 130 IVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAH 209 (493)
T ss_pred EEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecC
Confidence 99999986 68999999999999999999999899999999999999999999999999999999999999999888888
Q ss_pred CCC-eeEEEEcCCCCEEEEEE----CCCcEEEEeCCCCe-eEEEEecC-CCCeEEEEEcCCCCEEEEEE-CCCcEEEEeC
Q 006220 505 LSD-VDCVRWHINCNYIATGS----SDKTVRLWDVSSGE-CVRIFIGH-RSMILSLAMSPDGRYMASGD-EDGTIMMWDL 576 (656)
Q Consensus 505 ~~~-V~~v~~~p~~~~l~tgs----~dg~V~iwd~~~~~-~~~~~~~h-~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~ 576 (656)
.+. +..+.|++++..+++++ .|+.|++||+++.. ++.....+ ...+....|++++++|++|+ .||.|++||+
T Consensus 210 ~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl 289 (493)
T PTZ00421 210 ASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFEL 289 (493)
T ss_pred CCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence 765 45678999888887654 47899999998754 34333333 34566678999999999887 5999999999
Q ss_pred CCCeeeEeeeC-CCccEEEEEEcCC
Q 006220 577 ASGRCVTPLMG-HTSCVWTLAYSCE 600 (656)
Q Consensus 577 ~~~~~~~~~~~-h~~~V~~l~~s~~ 600 (656)
.+++.+..... +..++.+++|.|.
T Consensus 290 ~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 290 MNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred eCCceEEEeeccCCCCCcceEeccc
Confidence 99988776543 4467788888885
No 69
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=3.2e-27 Score=249.45 Aligned_cols=265 Identities=25% Similarity=0.424 Sum_probs=225.1
Q ss_pred ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (656)
...+.+|+... ..|..++.. +-+.|..|-|.++++++|...|.+.|||+..
T Consensus 393 ~~SikiWn~~t-~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS-------------------------- 443 (888)
T KOG0306|consen 393 GESIKIWNRDT-LKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLAS-------------------------- 443 (888)
T ss_pred CCcEEEEEccC-cceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeeh--------------------------
Confidence 34555665432 223333322 2677888888888888888888888888764
Q ss_pred CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccC-----CceeEEee-------CCCccEEEEEEecCCC
Q 006220 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL-----NANLVCYK-------GHNYPVWDVQFNPQGH 476 (656)
Q Consensus 409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~-----~~~~~~~~-------~h~~~V~~l~~sp~~~ 476 (656)
...+.....|.+.|++++.+||+..+++||.|.+|++||..- +.....++ .-...|.|+.+||||.
T Consensus 444 --~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 444 --ASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK 521 (888)
T ss_pred --hhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence 223444568999999999999999999999999999999641 11111111 1346799999999999
Q ss_pred EEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEc
Q 006220 477 YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMS 556 (656)
Q Consensus 477 ~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~s 556 (656)
+++++--|.++++|-+++.+-.-.+.||.-+|.|+..+|+++.++|||.|++|+||-+.=|.|-+.+.+|...|.++.|.
T Consensus 522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~ 601 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFL 601 (888)
T ss_pred EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEc
Confidence 99999999999999999999989999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220 557 PDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624 (656)
Q Consensus 557 p~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~ 624 (656)
|....+.++|.||.|+-||-..-.++..+.+|...|++++.+|+|.+++|+|.|.+|++|........
T Consensus 602 P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~ 669 (888)
T KOG0306|consen 602 PKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILI 669 (888)
T ss_pred ccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCccee
Confidence 99999999999999999999999999999999999999999999999999999999999998764443
No 70
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=3.6e-27 Score=257.19 Aligned_cols=243 Identities=30% Similarity=0.562 Sum_probs=220.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEE-eecCccCEEEEE
Q 006220 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL-YQGHSGPVYSAS 428 (656)
Q Consensus 350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~h~~~V~~l~ 428 (656)
+...+.|..|. ..++++|+.+++|++|+... ...+.. +.||.+.|.+++
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~----------------------------~~~i~~~l~GH~g~V~~l~ 256 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNN----------------------------GYLILTRLVGHFGGVWGLA 256 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeeccc----------------------------ceEEEeeccCCCCCceeEE
Confidence 45679999998 66899999999999999875 234444 899999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCe
Q 006220 429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDV 508 (656)
Q Consensus 429 ~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V 508 (656)
+..-+..|++|+.|.++++||..++.+...+.+|...|.++... +.++++|+.|.+|++|++.++..+..+.+|..+|
T Consensus 257 ~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V 334 (537)
T KOG0274|consen 257 FPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPV 334 (537)
T ss_pred EecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccE
Confidence 98878899999999999999999999999999999999988875 5578889999999999999999999999999999
Q ss_pred eEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC-eeeEeeeC
Q 006220 509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG-RCVTPLMG 587 (656)
Q Consensus 509 ~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~-~~~~~~~~ 587 (656)
.++..+ +.++++|+.|++|++||+.+++++..+.+|...|.++.+.+. ..+++|+.|++|++||+.+. +++..+.+
T Consensus 335 ~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~ 411 (537)
T KOG0274|consen 335 NCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQG 411 (537)
T ss_pred EEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcC
Confidence 999997 889999999999999999999999999999999999988865 89999999999999999999 99999999
Q ss_pred CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeeccc
Q 006220 588 HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE 629 (656)
Q Consensus 588 h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~ 629 (656)
|.+-|.++.+ .+++|++++.||+|++||..+++.......
T Consensus 412 h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 412 HTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEG 451 (537)
T ss_pred Cccccccccc--ccceeEeccccccEEEeecccCceeeeecc
Confidence 9998877665 477999999999999999999888766654
No 71
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=4.1e-27 Score=236.91 Aligned_cols=270 Identities=23% Similarity=0.404 Sum_probs=225.9
Q ss_pred ceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccC-CCCCceeeEEeec
Q 006220 341 SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG-PNGRKRSYTLYQG 419 (656)
Q Consensus 341 s~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~ 419 (656)
+..+.....|+-+|+|++++||.++..+++.+|+|.=|++.......... ....+.. .....+... .+
T Consensus 132 s~~~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~---------~~~ev~k~~~~~~k~~r--~~ 200 (479)
T KOG0299|consen 132 SSDFRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYII---------ERDEVLKSHGNPLKESR--KG 200 (479)
T ss_pred cccceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCccccccc---------ccchhhhhccCCCCccc--cc
Confidence 33455667888899999999999999999999999999987643221000 0000000 001111111 48
Q ss_pred CccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 006220 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR 499 (656)
Q Consensus 420 h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~ 499 (656)
|...|.+++.|+||++|++|+.|..|.||+.++.+.+..+++|...|.+++|-...+.+++++.|+++++|+++....+.
T Consensus 201 h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ve 280 (479)
T KOG0299|consen 201 HVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVE 280 (479)
T ss_pred ccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred EecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579 (656)
Q Consensus 500 ~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~ 579 (656)
++.+|.+.|..+.-..-++.+-+|+.|+++++|++ ......+|.+|.+.+-|++|-.+ ..+++|+.+|.|.+|++.+.
T Consensus 281 tlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KK 358 (479)
T KOG0299|consen 281 TLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKK 358 (479)
T ss_pred HHhCCccceeeechhcccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeeccc
Confidence 99999999999998888888888889999999999 44555678899999999999854 68899999999999999998
Q ss_pred eeeEeee-CCC-----------ccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCc
Q 006220 580 RCVTPLM-GHT-----------SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (656)
Q Consensus 580 ~~~~~~~-~h~-----------~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~ 623 (656)
+++.... .|. ..|++++..|...++++|+.+|+|++|.+..+-.
T Consensus 359 kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 359 KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc
Confidence 8887764 232 2689999999999999999999999999988743
No 72
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=6.2e-27 Score=247.26 Aligned_cols=254 Identities=21% Similarity=0.419 Sum_probs=224.2
Q ss_pred eeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCc
Q 006220 342 VSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS 421 (656)
Q Consensus 342 ~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~ 421 (656)
+.-+++.+|...|.++++|.|...+++| ..+.|+||+..+.. ..+++. .
T Consensus 364 ~~~i~~~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~k----------------------------ciRTi~--~ 412 (888)
T KOG0306|consen 364 TSNIEIGGHRSDVRSLCVSSDSILLASG-AGESIKIWNRDTLK----------------------------CIRTIT--C 412 (888)
T ss_pred cceeeeccchhheeEEEeecCceeeeec-CCCcEEEEEccCcc----------------------------eeEEec--c
Confidence 3457889999999999999999988888 67789999987632 233332 2
Q ss_pred cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCC-----Cc
Q 006220 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-----IQ 496 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~-----~~ 496 (656)
+-+.+..|-|.++++++|...|.+.+||+.+...+..++.|.+.||+++.+|++..+++||.|.+|++||..- +.
T Consensus 413 ~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt 492 (888)
T KOG0306|consen 413 GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGT 492 (888)
T ss_pred ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcc
Confidence 4788999999999999999999999999999999999999999999999999999999999999999999741 11
Q ss_pred ee--------EEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 006220 497 PL--------RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED 568 (656)
Q Consensus 497 ~~--------~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d 568 (656)
.. +++ .-...|.|+.++|+|++|+++--|.+|.+|-+.+-+..-.+-||.-||.||..|||++.++||+.|
T Consensus 493 ~~k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSAD 571 (888)
T KOG0306|consen 493 QKKVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSAD 571 (888)
T ss_pred cceeeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCC
Confidence 11 122 234789999999999999999999999999999999998999999999999999999999999999
Q ss_pred CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220 569 GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 569 g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
..|+||-+.-|.|-+.+.+|...|.++.|-|....+.++|.|+.|+-||-..-+.++..
T Consensus 572 KnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L 630 (888)
T KOG0306|consen 572 KNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL 630 (888)
T ss_pred CceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheee
Confidence 99999999999999999999999999999999999999999999999998776655444
No 73
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3e-27 Score=221.24 Aligned_cols=205 Identities=28% Similarity=0.434 Sum_probs=181.3
Q ss_pred CccCEEEEEEccCCC-EEEEEeCCCeEEEEeccC-CceeEEeeCCCccEEEEEEec-CCCEEEEEECCCcEEEEECCCCc
Q 006220 420 HSGPVYSASFSPLGD-FILSSSADTTIRLWSTKL-NANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQ 496 (656)
Q Consensus 420 h~~~V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~-~~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~lwd~~~~~ 496 (656)
-...++.++|++... .+++++.||++++||+.- ..++..++.|...|.++.|++ .+..++++|.|++|++|+...++
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 457899999999764 788999999999999643 346788999999999999999 56678999999999999999999
Q ss_pred eeEEecCCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcC-CCCEEEEEECCCcEEEE
Q 006220 497 PLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMW 574 (656)
Q Consensus 497 ~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp-~g~~L~s~~~dg~I~iw 574 (656)
.+.++.+|.+-|...+|+| ..+.++++|.|+++++||++.......+..|...|.|+.|+. +.+.|+||+.|+.|++|
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW 218 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence 9999999999999999998 578999999999999999997555555889999999999998 56789999999999999
Q ss_pred eCCCC-eeeEeeeCCCccEEEEEEcCC-CCEEEEEECCCcEEEEeCCCCCce
Q 006220 575 DLASG-RCVTPLMGHTSCVWTLAYSCE-GSLLASGSADCTVKLWDVTTSTKV 624 (656)
Q Consensus 575 D~~~~-~~~~~~~~h~~~V~~l~~s~~-~~~l~sgs~Dg~I~iWd~~~~~~~ 624 (656)
|+++. .++..+.+|.-.|..+.|||. ..+|++++.|-+++|||...+...
T Consensus 219 Dir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~ 270 (311)
T KOG0277|consen 219 DIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA 270 (311)
T ss_pred ehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhh
Confidence 99875 467888999999999999995 568999999999999999866543
No 74
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=2.9e-28 Score=241.99 Aligned_cols=263 Identities=23% Similarity=0.330 Sum_probs=228.7
Q ss_pred CCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEE
Q 006220 337 AALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL 416 (656)
Q Consensus 337 ~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (656)
..+|+.+.+.+..|.+.+..+.|-++...|++|+.|..|++|+....+ ......
T Consensus 161 ~~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k--------------------------~~~~~t 214 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK--------------------------SELIST 214 (459)
T ss_pred cccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccch--------------------------hhhhhh
Confidence 356888888889999999999999999999999999999999987522 124456
Q ss_pred eecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 006220 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ 496 (656)
Q Consensus 417 l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~ 496 (656)
+.|..++|+++.|.+++.++++++.|+.+++|+++..+...++.+|+..|+++.|......+++|+.|.+|++||+....
T Consensus 215 LaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~ 294 (459)
T KOG0288|consen 215 LAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY 294 (459)
T ss_pred hhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhh
Confidence 77788999999999999999999999999999999999999999999999999999877779999999999999999988
Q ss_pred eeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (656)
Q Consensus 497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~ 576 (656)
+.+.+.. .+.+..|..+ ...+++|-.|++||+||++++.+++....+. .|+++..+++|..|.+++.|.++.+.|+
T Consensus 295 C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDl 370 (459)
T KOG0288|consen 295 CSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDL 370 (459)
T ss_pred eeccccc-cccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeec
Confidence 8876653 3455566654 4568889999999999999999999988764 8999999999999999999999999999
Q ss_pred CCCeeeEeeeCC----CccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeeccc
Q 006220 577 ASGRCVTPLMGH----TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE 629 (656)
Q Consensus 577 ~~~~~~~~~~~h----~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~ 629 (656)
++......+... ....+.+.|||++.|+++||.||.|+||++.+++.......
T Consensus 371 Rt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~ 427 (459)
T KOG0288|consen 371 RTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL 427 (459)
T ss_pred ccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEecc
Confidence 998887777632 23478899999999999999999999999999887654433
No 75
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.8e-27 Score=218.19 Aligned_cols=211 Identities=27% Similarity=0.479 Sum_probs=196.7
Q ss_pred eeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEEC
Q 006220 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM 492 (656)
Q Consensus 413 ~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~ 492 (656)
....+..|.++|..+.|+-+|++.++|+.|.+|++|+...+.++++|.+|...|.+++.+.++..|++|+.|+.+.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC--CeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCc
Q 006220 493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS--GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT 570 (656)
Q Consensus 493 ~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~--~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~ 570 (656)
.+++.++.+.+|...|+.++|+.+...+++|+.|.++++||.++ .++++++......|.++..+ +..|++|+.||+
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGt 166 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGT 166 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCc
Confidence 99999999999999999999999999999999999999999986 46788888888889999887 678999999999
Q ss_pred EEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220 571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 571 I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
++.||++.|+....+.+| +|++++|+++++....++.|+++++.|-.+++.+...
T Consensus 167 vRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sY 221 (307)
T KOG0316|consen 167 VRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSY 221 (307)
T ss_pred EEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHh
Confidence 999999999988777665 7999999999999999999999999999998866544
No 76
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.8e-27 Score=238.96 Aligned_cols=247 Identities=25% Similarity=0.394 Sum_probs=206.7
Q ss_pred eeCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220 348 INTHNGLNCASISQDGSL-VAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (656)
Q Consensus 348 ~~~~~~V~~l~fs~dg~~-La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 426 (656)
...++.|++++|||...+ +|+. ..-.+.||+..+.. ....+......|++
T Consensus 23 ~ke~~~vssl~fsp~~P~d~aVt-~S~rvqly~~~~~~----------------------------~~k~~srFk~~v~s 73 (487)
T KOG0310|consen 23 HKEHNSVSSLCFSPKHPYDFAVT-SSVRVQLYSSVTRS----------------------------VRKTFSRFKDVVYS 73 (487)
T ss_pred ccccCcceeEecCCCCCCceEEe-cccEEEEEecchhh----------------------------hhhhHHhhccceeE
Confidence 455678999999997554 4443 45678999876421 12223345678999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecC-CCEEEEEECCCcEEEEECCCCceeEEecCCC
Q 006220 427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRIQPLRIMAGHL 505 (656)
Q Consensus 427 l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~-~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~ 505 (656)
+.|-.||++|+.|...|.|+++|+.+...+..+.+|+.||..+.|+|. +..|++|+.|+.+++||+.+......+.+|.
T Consensus 74 ~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~ht 153 (487)
T KOG0310|consen 74 VDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHT 153 (487)
T ss_pred EEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCc
Confidence 999999999999999999999998876778889999999999999995 5567888899999999999988766888999
Q ss_pred CCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCC-eeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC-eee
Q 006220 506 SDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG-RCV 582 (656)
Q Consensus 506 ~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~-~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~-~~~ 582 (656)
..|.|.+|+| ++..++||+.||+|++||++.. ..+..+ .|..+|..+.+-|.|..|++++. ..|++||+.+| +.+
T Consensus 154 DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll 231 (487)
T KOG0310|consen 154 DYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLL 231 (487)
T ss_pred ceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceeh
Confidence 9999999998 4568899999999999999987 555555 59999999999999999999875 68999999855 455
Q ss_pred EeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220 583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625 (656)
Q Consensus 583 ~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~ 625 (656)
..+..|...|+|+++..+++.|+|||-|+.|++||+.+-+.+.
T Consensus 232 ~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~ 274 (487)
T KOG0310|consen 232 TSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVH 274 (487)
T ss_pred hhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEE
Confidence 5555699999999999999999999999999999977655443
No 77
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=7e-28 Score=224.73 Aligned_cols=249 Identities=25% Similarity=0.435 Sum_probs=212.1
Q ss_pred EEeeCCCCeEEEEEc---CCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220 346 TFINTHNGLNCASIS---QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (656)
Q Consensus 346 ~~~~~~~~V~~l~fs---~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 422 (656)
+-.+|..+|-.++|| |+|-+|++++.||.-.+-+= ..+..+-++.||.+
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g----------------------------~tgdwigtfeghkg 60 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNG----------------------------DTGDWIGTFEGHKG 60 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccC----------------------------CCCCcEEeeeccCc
Confidence 347899999999998 58999999999886543332 22446678899999
Q ss_pred CEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc-eeEEe
Q 006220 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ-PLRIM 501 (656)
Q Consensus 423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~-~~~~~ 501 (656)
.|++...+.+...-++++.|-+-++||.-++..+..+. |..-|..++|+.+.++|++|+.+..+++||++..+ +...+
T Consensus 61 avw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~ 139 (334)
T KOG0278|consen 61 AVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEI 139 (334)
T ss_pred ceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhh
Confidence 99999999888888999999999999999999998886 88899999999999999999999999999998764 56778
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCC--------------------------------
Q 006220 502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM-------------------------------- 549 (656)
Q Consensus 502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~-------------------------------- 549 (656)
.+|.+.|..+.|....+.|++++.|++||+||.+++..+..+.. ..+
T Consensus 140 ~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~l 218 (334)
T KOG0278|consen 140 SGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLL 218 (334)
T ss_pred cCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEecCceeEEeccccccce
Confidence 89999999999999999999999999999999999988876641 222
Q ss_pred --------eEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEee-eCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 550 --------ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL-MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 550 --------i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~-~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
|.+...+|+...+++|++|+.++.||..+|..+..+ ++|.++|.|+.|+|+|...++|+.||+|++|.+..
T Consensus 219 Ks~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 219 KSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred eeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence 334455666666777778888888888888888775 79999999999999999999999999999999987
Q ss_pred CCce
Q 006220 621 STKV 624 (656)
Q Consensus 621 ~~~~ 624 (656)
++..
T Consensus 299 ~~~~ 302 (334)
T KOG0278|consen 299 GKTY 302 (334)
T ss_pred CCch
Confidence 6653
No 78
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.3e-25 Score=206.43 Aligned_cols=258 Identities=22% Similarity=0.320 Sum_probs=216.8
Q ss_pred CCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEe
Q 006220 338 ALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417 (656)
Q Consensus 338 ~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 417 (656)
..|++.+..-..|.+.|.|.+|||+|.++|+|+.|.+|++.-++......+ ..-..+
T Consensus 76 ~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~-----------------------g~dle~ 132 (350)
T KOG0641|consen 76 QPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNAT-----------------------GHDLEF 132 (350)
T ss_pred CCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEeccccccccc-----------------------Ccceee
Confidence 345777777788889999999999999999999999999988764222211 112335
Q ss_pred ecCccCEEEEEEccC----CCEEEEEe-CCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEEC
Q 006220 418 QGHSGPVYSASFSPL----GDFILSSS-ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM 492 (656)
Q Consensus 418 ~~h~~~V~~l~~spd----~~~L~s~s-~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~ 492 (656)
.-|.+.|..++|-.+ +..|++++ .|..|++-|..+++....+.+|++.|..+ ++-+|-+|++|+.|.+|++||+
T Consensus 133 nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdl 211 (350)
T KOG0641|consen 133 NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDL 211 (350)
T ss_pred eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEee
Confidence 669999999999653 34677655 47788888999999999999999999876 3446889999999999999999
Q ss_pred CCCceeEEecC-------CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE
Q 006220 493 DRIQPLRIMAG-------HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG 565 (656)
Q Consensus 493 ~~~~~~~~~~~-------~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~ 565 (656)
+-..+++.+.. ..+.|.+++..|.|+.|++|-.|..+.+||++.+..++.|..|...|.|+.|||...|+++|
T Consensus 212 rv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~ 291 (350)
T KOG0641|consen 212 RVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTC 291 (350)
T ss_pred eccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEe
Confidence 98888887652 23679999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCcEEEEeCCCC----eeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 566 DEDGTIMMWDLASG----RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619 (656)
Q Consensus 566 ~~dg~I~iwD~~~~----~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~ 619 (656)
+.|..|++-|+.-. -++.....|...+..+.|+|..-.+++.+.|.++.+|-+.
T Consensus 292 syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 292 SYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred cccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 99999999998532 2233345788888999999999899999999999999764
No 79
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.6e-25 Score=205.88 Aligned_cols=267 Identities=23% Similarity=0.396 Sum_probs=218.5
Q ss_pred ceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecC
Q 006220 341 SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH 420 (656)
Q Consensus 341 s~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h 420 (656)
...+.+.+.....|.+++|+|.|.+.|+|+...+++|............. + . ........+.....|
T Consensus 22 ~f~~i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~h--e-----a------~~~pp~v~~kr~khh 88 (350)
T KOG0641|consen 22 HFEAINILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAH--E-----A------AKQPPSVLCKRNKHH 88 (350)
T ss_pred ceEEEEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCccccc--c-----c------ccCCCeEEeeecccc
Confidence 33455667777889999999999999999999999998765321110000 0 0 000112345566789
Q ss_pred ccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCcee-----EEeeCCCccEEEEEEec----CCCEEEEEE-CCCcEEEE
Q 006220 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL-----VCYKGHNYPVWDVQFNP----QGHYFASSS-HDRTARIW 490 (656)
Q Consensus 421 ~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~-----~~~~~h~~~V~~l~~sp----~~~~l~sgs-~Dg~i~lw 490 (656)
.+.|+|.+|||+|.++++|+.|.+|++...+...+. ..+.-|.+.|.+++|-. .+..+++++ .|..|++-
T Consensus 89 kgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~t 168 (350)
T KOG0641|consen 89 KGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYIT 168 (350)
T ss_pred CccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEe
Confidence 999999999999999999999999999876654432 45677999999999975 356677766 67888888
Q ss_pred ECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec-------CCCCeEEEEEcCCCCEEE
Q 006220 491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG-------HRSMILSLAMSPDGRYMA 563 (656)
Q Consensus 491 d~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~-------h~~~i~~l~~sp~g~~L~ 563 (656)
|..+++....+.+|.+.|.++ ++=++-.+++|+.|.+||+||++-..+++++.. ..+.|.+++..|.|++|+
T Consensus 169 dc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~ 247 (350)
T KOG0641|consen 169 DCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLA 247 (350)
T ss_pred ecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceee
Confidence 999999999999999999876 234688999999999999999999999987642 235799999999999999
Q ss_pred EEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 564 SGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (656)
Q Consensus 564 s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~ 621 (656)
+|..|.+..+||++-++.+..+..|+..|.++.|||...++.+++.|..|++-|+...
T Consensus 248 sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 248 SGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred eccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence 9999999999999999999999999999999999999999999999999999998653
No 80
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.1e-26 Score=256.10 Aligned_cols=268 Identities=24% Similarity=0.432 Sum_probs=224.3
Q ss_pred EEeeCC-CCeEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220 346 TFINTH-NGLNCASISQDGSLVAGGF--SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (656)
Q Consensus 346 ~~~~~~-~~V~~l~fs~dg~~La~g~--~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 422 (656)
++.+|+ ..|.+++.+|||..+|+|+ .||.++||+.......... .+ . ...........|.+
T Consensus 7 ~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~------------~~---~-~l~k~l~~m~~h~~ 70 (942)
T KOG0973|consen 7 TWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEE------------KN---E-NLPKHLCTMDDHDG 70 (942)
T ss_pred cccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhh------------hh---c-ccchhheeeccccC
Confidence 344554 4599999999999999999 8999999998752111000 00 0 01345566778999
Q ss_pred CEEEEEEccCCCEEEEEeCCCeEEEEeccC------------------CceeEEeeCCCccEEEEEEecCCCEEEEEECC
Q 006220 423 PVYSASFSPLGDFILSSSADTTIRLWSTKL------------------NANLVCYKGHNYPVWDVQFNPQGHYFASSSHD 484 (656)
Q Consensus 423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~------------------~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D 484 (656)
.|.|+.|+|||++|++||.|+.|.+|.... ++++..+.+|...|.+++|+|++.++++++.|
T Consensus 71 sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~D 150 (942)
T KOG0973|consen 71 SVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLD 150 (942)
T ss_pred ceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEeccc
Confidence 999999999999999999999999998762 23567789999999999999999999999999
Q ss_pred CcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCC------CCeEEEEEcCC
Q 006220 485 RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR------SMILSLAMSPD 558 (656)
Q Consensus 485 g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~------~~i~~l~~sp~ 558 (656)
++|.+|+..+.+.+..+.+|.+.|..+.|.|-|+|||+-+.|++|++|++.+....+.+.++- ..+..+.||||
T Consensus 151 nsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPD 230 (942)
T KOG0973|consen 151 NSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPD 230 (942)
T ss_pred ceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCC
Confidence 999999999999999999999999999999999999999999999999988887877776543 35788999999
Q ss_pred CCEEEEEE----CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcC-----CCC------------EEEEEECCCcEEEEe
Q 006220 559 GRYMASGD----EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC-----EGS------------LLASGSADCTVKLWD 617 (656)
Q Consensus 559 g~~L~s~~----~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~-----~~~------------~l~sgs~Dg~I~iWd 617 (656)
|.+|++.. .-.++.|.+-.+.+.-..+-||.+++.++.|+| ... .+|+|+.|++|.||.
T Consensus 231 G~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~ 310 (942)
T KOG0973|consen 231 GHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWN 310 (942)
T ss_pred cCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEe
Confidence 99999853 334789999888888889999999999999998 111 789999999999999
Q ss_pred CCCCCceeeccc
Q 006220 618 VTTSTKVLKTEE 629 (656)
Q Consensus 618 ~~~~~~~~~~~~ 629 (656)
....+++....+
T Consensus 311 T~~~RPl~vi~~ 322 (942)
T KOG0973|consen 311 TALPRPLFVIHN 322 (942)
T ss_pred cCCCCchhhhhh
Confidence 988777665543
No 81
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=4.3e-27 Score=233.65 Aligned_cols=260 Identities=22% Similarity=0.333 Sum_probs=222.4
Q ss_pred HHhccceecCCCCCCcee-EEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccc
Q 006220 326 EDLRNRVHLSSAALPSVS-FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI 404 (656)
Q Consensus 326 ~~~~~~v~l~~~~~ps~~-~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 404 (656)
......|++|+....... .-++.+..++|+++.|.+++.++++.+.|+.+++|++..
T Consensus 193 gg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~---------------------- 250 (459)
T KOG0288|consen 193 GGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS---------------------- 250 (459)
T ss_pred cchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc----------------------
Confidence 345567788876554422 234566778899999999999999999999999999875
Q ss_pred cCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECC
Q 006220 405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD 484 (656)
Q Consensus 405 ~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D 484 (656)
.+...++.||++.|+++.|......+++|+.|.+|++||+....|...+- ..+.+.+|+.+ ...+++|..|
T Consensus 251 ------~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~D 321 (459)
T KOG0288|consen 251 ------LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFD 321 (459)
T ss_pred ------hhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccc
Confidence 34556788999999999999877779999999999999999887776654 34456667665 5678999999
Q ss_pred CcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecC----CCCeEEEEEcCCCC
Q 006220 485 RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH----RSMILSLAMSPDGR 560 (656)
Q Consensus 485 g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h----~~~i~~l~~sp~g~ 560 (656)
++|++||.++..+.+....+ +.|+++..++++..+.+++.|.++.+.|+++.+....+... .+..+.+.|||++.
T Consensus 322 kkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~ 400 (459)
T KOG0288|consen 322 KKVRFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGS 400 (459)
T ss_pred cceEEEeccCCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCc
Confidence 99999999999999999877 49999999999999999999999999999999888877642 23478899999999
Q ss_pred EEEEEECCCcEEEEeCCCCeeeEeeeCCCc--cEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTS--CVWTLAYSCEGSLLASGSADCTVKLWD 617 (656)
Q Consensus 561 ~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~--~V~~l~~s~~~~~l~sgs~Dg~I~iWd 617 (656)
|+++|+.||.|+||++.++++...+..... .|++++|+|.|..|++++.++.+.+|.
T Consensus 401 YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 401 YVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999999999999999999998876553 599999999999999999999999993
No 82
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.7e-27 Score=244.89 Aligned_cols=240 Identities=22% Similarity=0.395 Sum_probs=213.8
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEe
Q 006220 361 QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS 440 (656)
Q Consensus 361 ~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s 440 (656)
|.+++|.+|+.||.|++|+......... ......+..|+..|..+....+++.|+|||
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s----------------------~~~~asme~HsDWVNDiiL~~~~~tlIS~S 92 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPS----------------------TPYIASMEHHSDWVNDIILCGNGKTLISAS 92 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcc----------------------cchhhhhhhhHhHHhhHHhhcCCCceEEec
Confidence 5688999999999999999875221110 112445678999999999999999999999
Q ss_pred CCCeEEEEeccCC--ceeEEeeCCCccEEEEEE-ecCCCEEEEEECCCcEEEEECCCCce----------eEEec-CCCC
Q 006220 441 ADTTIRLWSTKLN--ANLVCYKGHNYPVWDVQF-NPQGHYFASSSHDRTARIWSMDRIQP----------LRIMA-GHLS 506 (656)
Q Consensus 441 ~Dg~I~lwd~~~~--~~~~~~~~h~~~V~~l~~-sp~~~~l~sgs~Dg~i~lwd~~~~~~----------~~~~~-~~~~ 506 (656)
.|.+|++|+...+ -+..++..|...|.|+++ -++...+|+||-|+.|.+||+.++.. ...+. |+..
T Consensus 93 sDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~ 172 (735)
T KOG0308|consen 93 SDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD 172 (735)
T ss_pred CCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence 9999999999877 577788899999999999 77889999999999999999986621 22233 7888
Q ss_pred CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeee
Q 006220 507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM 586 (656)
Q Consensus 507 ~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~ 586 (656)
.|.+++.+++|..|++|+..+.+++||.++++.+..+.||+..|.++..++||..++++++||+|++||+...+|+.++.
T Consensus 173 siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~ 252 (735)
T KOG0308|consen 173 SIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI 252 (735)
T ss_pred ceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220 587 GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 587 ~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
.|...||++..+|+-..+.+|+.||.|..=|+.+..
T Consensus 253 vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 253 VHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPA 288 (735)
T ss_pred eccCceEEEeeCCCcceEEecCCCCcEEecccCCch
Confidence 999999999999999999999999999999998853
No 83
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=7.1e-26 Score=217.02 Aligned_cols=261 Identities=19% Similarity=0.301 Sum_probs=208.3
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220 351 HNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (656)
Q Consensus 351 ~~~V~~l~fs~-dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 429 (656)
.+.|.+++||| ...++++|+.||+||+|+++..+.. .-+....|.++|.+++|
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~--------------------------~~ka~~~~~~PvL~v~W 80 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL--------------------------VPKAQQSHDGPVLDVCW 80 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcc--------------------------cchhhhccCCCeEEEEE
Confidence 46799999999 5667779999999999999852111 11334569999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCC--EEEEEECCCcEEEEECCCCceeEEecCCCCC
Q 006220 430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH--YFASSSHDRTARIWSMDRIQPLRIMAGHLSD 507 (656)
Q Consensus 430 spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~--~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~ 507 (656)
+.||..+++|+.|+.+++||+.++ .+..+..|..+|.++.|-+... .|+|||.|.+|+.||++...++..+.-. ..
T Consensus 81 sddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eR 158 (347)
T KOG0647|consen 81 SDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ER 158 (347)
T ss_pred ccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-ce
Confidence 999999999999999999999988 4555677999999999998665 7999999999999999999998887633 55
Q ss_pred eeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEE--ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC--eeeE
Q 006220 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF--IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG--RCVT 583 (656)
Q Consensus 508 V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~--~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~--~~~~ 583 (656)
+.++.. -...++++..++.|.+|+++++...... ..-.-.+.|++..++....+.|+-+|.+.|..+..+ +.-.
T Consensus 159 vYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nF 236 (347)
T KOG0647|consen 159 VYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNF 236 (347)
T ss_pred eeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCce
Confidence 666544 3457888999999999999876443211 112335889999999888899999999999999876 4444
Q ss_pred eeeCCC---------ccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEE
Q 006220 584 PLMGHT---------SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQV 654 (656)
Q Consensus 584 ~~~~h~---------~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~F 654 (656)
+++.|. -.|.+++|+|.-..|+++|.||++.+||-.... .|.+++++.-||.++.|
T Consensus 237 tFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~---------------kLk~s~~~~qpItcc~f 301 (347)
T KOG0647|consen 237 TFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDART---------------KLKTSETHPQPITCCSF 301 (347)
T ss_pred eEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhh---------------hhhccCcCCCccceeEe
Confidence 555554 257889999999999999999999999976644 34566777778888777
Q ss_pred cC
Q 006220 655 LR 656 (656)
Q Consensus 655 tr 656 (656)
++
T Consensus 302 n~ 303 (347)
T KOG0647|consen 302 NR 303 (347)
T ss_pred cC
Confidence 64
No 84
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=9.7e-26 Score=221.10 Aligned_cols=174 Identities=21% Similarity=0.447 Sum_probs=164.1
Q ss_pred eeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEEC
Q 006220 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM 492 (656)
Q Consensus 413 ~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~ 492 (656)
....+..|+++|++++.+|+.+++++|+.|..-.+|++.++.....+.+|...|.++.|+.+|.+||||+.+|.|++|..
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEE
Q 006220 493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572 (656)
Q Consensus 493 ~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~ 572 (656)
.++.....+......+.-+.|||.+..|++|+.||.+.+|.+.++...+.+.||..++++=.|.|+|+.++++..||+|+
T Consensus 136 stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~ 215 (399)
T KOG0296|consen 136 STGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTII 215 (399)
T ss_pred ccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEE
Confidence 99998888877778999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred EEeCCCCeeeEeee
Q 006220 573 MWDLASGRCVTPLM 586 (656)
Q Consensus 573 iwD~~~~~~~~~~~ 586 (656)
+|+..+++++..+.
T Consensus 216 ~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 216 VWNPKTGQPLHKIT 229 (399)
T ss_pred EEecCCCceeEEec
Confidence 99999987776653
No 85
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=6e-25 Score=240.60 Aligned_cols=248 Identities=13% Similarity=0.217 Sum_probs=191.8
Q ss_pred ceecCCCCCCceeEEEEeeCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCC
Q 006220 331 RVHLSSAALPSVSFYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409 (656)
Q Consensus 331 ~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (656)
.+++|.... ..+...+.+|.+.|.+++|+|+ +.+||+|+.||.|+||++........ .
T Consensus 55 vI~L~~~~r-~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~--------------------~ 113 (568)
T PTZ00420 55 AIRLENQMR-KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK--------------------E 113 (568)
T ss_pred EEEeeecCC-CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc--------------------c
Confidence 455664332 2345678899999999999997 89999999999999999874211000 0
Q ss_pred CceeeEEeecCccCEEEEEEccCCCE-EEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEE
Q 006220 410 RKRSYTLYQGHSGPVYSASFSPLGDF-ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR 488 (656)
Q Consensus 410 ~~~~~~~l~~h~~~V~~l~~spd~~~-L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~ 488 (656)
.......+.+|.+.|.+++|+|++.. |++|+.|++|++||+.++..+..+. |...|.+++|+|+|.+|++++.|+.|+
T Consensus 114 i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~Ir 192 (568)
T PTZ00420 114 IKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMH 192 (568)
T ss_pred cccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEE
Confidence 01133457789999999999999876 5789999999999999988777665 567899999999999999999999999
Q ss_pred EEECCCCceeEEecCCCCCeeE-----EEEcCCCCEEEEEECCC----cEEEEeCCC-CeeEEEEecC--CCCeEEEEEc
Q 006220 489 IWSMDRIQPLRIMAGHLSDVDC-----VRWHINCNYIATGSSDK----TVRLWDVSS-GECVRIFIGH--RSMILSLAMS 556 (656)
Q Consensus 489 lwd~~~~~~~~~~~~~~~~V~~-----v~~~p~~~~l~tgs~dg----~V~iwd~~~-~~~~~~~~~h--~~~i~~l~~s 556 (656)
+||+++++.+..+.+|.+.+.+ ..|++++.+|++++.|+ +|+|||+++ +.++..+..+ .+.+......
T Consensus 193 IwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~ 272 (568)
T PTZ00420 193 IIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDE 272 (568)
T ss_pred EEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeC
Confidence 9999999999999999876543 33458889999988764 799999995 5666554432 3334444445
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCeeeEeee--CCCccEEEEEEcCCC
Q 006220 557 PDGRYMASGDEDGTIMMWDLASGRCVTPLM--GHTSCVWTLAYSCEG 601 (656)
Q Consensus 557 p~g~~L~s~~~dg~I~iwD~~~~~~~~~~~--~h~~~V~~l~~s~~~ 601 (656)
++|.++++|+.|+.|++|++..+. +..+. .+..++.+++|.|..
T Consensus 273 ~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 273 STGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred CCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 678999999999999999998764 33332 255788899999964
No 86
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=7.7e-26 Score=213.23 Aligned_cols=210 Identities=28% Similarity=0.408 Sum_probs=191.6
Q ss_pred EeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 006220 416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI 495 (656)
Q Consensus 416 ~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~ 495 (656)
.++||..|++.+.++.+|.+|++|+.|.++.+|-..+|+.+-+|.||.+.|||+..+.+..++++|+.|.++++||+.++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 46789999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred ceeEEecCCCCCeeEEEEcCCCCEEEEEEC-----CCcEEEEeCC-------CCeeEEEEecCCCCeEEEEEcCCCCEEE
Q 006220 496 QPLRIMAGHLSDVDCVRWHINCNYIATGSS-----DKTVRLWDVS-------SGECVRIFIGHRSMILSLAMSPDGRYMA 563 (656)
Q Consensus 496 ~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-----dg~V~iwd~~-------~~~~~~~~~~h~~~i~~l~~sp~g~~L~ 563 (656)
+.+..+. ...+|..+.|++.|++++..+. .+.|.++|++ ..++...+..+.+.++.+-|+|-+++|+
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 9999887 4578999999999999887764 3689999998 4566788888889999999999999999
Q ss_pred EEECCCcEEEEeCCCCee-eEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceee
Q 006220 564 SGDEDGTIMMWDLASGRC-VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLK 626 (656)
Q Consensus 564 s~~~dg~I~iwD~~~~~~-~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~ 626 (656)
+|.+||.|.+||+++|.. +.....|...|+.+.+++|..++++++.|.+-++||+.+-..+..
T Consensus 164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kt 227 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKT 227 (327)
T ss_pred EecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEE
Confidence 999999999999999854 445578999999999999999999999999999999988665443
No 87
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4.9e-27 Score=229.63 Aligned_cols=248 Identities=20% Similarity=0.407 Sum_probs=201.3
Q ss_pred EeeCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 347 FINTHNGLNCASISQDG-SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 347 ~~~~~~~V~~l~fs~dg-~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
+-+|.++|.|++=+|.. ..+|+|+.||.|+|||+.. ......+..|.|.|.
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq----------------------------R~~~~~f~AH~G~V~ 113 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ----------------------------RECIRTFKAHEGLVR 113 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhh----------------------------hhhhheeecccCcee
Confidence 47899999999999987 8899999999999999985 334566788889999
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeccC--------------------------------------CceeEEeeCCCccEE
Q 006220 426 SASFSPLGDFILSSSADTTIRLWSTKL--------------------------------------NANLVCYKGHNYPVW 467 (656)
Q Consensus 426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~--------------------------------------~~~~~~~~~h~~~V~ 467 (656)
++++.. ..+++++.|.+|+.|.++. ..++..+.-....|.
T Consensus 114 Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~ 191 (433)
T KOG0268|consen 114 GICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSIS 191 (433)
T ss_pred eEEecc--cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCcee
Confidence 988875 6678888888888887431 111222222234467
Q ss_pred EEEEecC-CCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC-eeEEEEec
Q 006220 468 DVQFNPQ-GHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-ECVRIFIG 545 (656)
Q Consensus 468 ~l~~sp~-~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~-~~~~~~~~ 545 (656)
++.|+|. ...|++|+.|+.|.+||+++.+|+..+. -...-+.++|+|++-.+++|+.|..++.||++.- .++....+
T Consensus 192 svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~d 270 (433)
T KOG0268|consen 192 SVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKD 270 (433)
T ss_pred EEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcc
Confidence 7788884 4567888899999999999999988765 3355678999998888899999999999999864 57788899
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCC-CccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220 546 HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH-TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624 (656)
Q Consensus 546 h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h-~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~ 624 (656)
|.+.|.++.|||.|+-+++|+.|.+|+||..+.+..--.+..- -..|.++.||.|.++++|||.|+.|++|.....+++
T Consensus 271 hvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 271 HVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred cceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence 9999999999999999999999999999999877644333211 156999999999999999999999999998776654
Q ss_pred e
Q 006220 625 L 625 (656)
Q Consensus 625 ~ 625 (656)
-
T Consensus 351 g 351 (433)
T KOG0268|consen 351 G 351 (433)
T ss_pred C
Confidence 3
No 88
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=8.3e-26 Score=229.70 Aligned_cols=279 Identities=20% Similarity=0.359 Sum_probs=211.4
Q ss_pred CCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc-cccCC-CCCCC-------CC---------
Q 006220 339 LPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAV-SSGLQ-GENDT-------TP--------- 400 (656)
Q Consensus 339 ~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~-~~~~~-~~~~~-------~~--------- 400 (656)
+|..+...+.+|...|+++++.|.|..|++|+-|-+|++||+........ ...++ .+... ..
T Consensus 155 IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg 234 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG 234 (641)
T ss_pred CCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec
Confidence 46666778888889999999999999999999999999999986432111 01111 11000 00
Q ss_pred --CccccCCCCC-----------ceeeEEeecCccCEEEEEEccCCC-EEEEEeCCCeEEEEeccCCce-eEEee-----
Q 006220 401 --REDIIGPNGR-----------KRSYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNAN-LVCYK----- 460 (656)
Q Consensus 401 --~~~~~~~~~~-----------~~~~~~l~~h~~~V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~-~~~~~----- 460 (656)
...++..++. ........||...++|.+|+|+.+ .+++|+.||++|+|++..... ...++
T Consensus 235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~ 314 (641)
T KOG0772|consen 235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG 314 (641)
T ss_pred CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC
Confidence 0011111111 111223568999999999999875 789999999999999986543 23332
Q ss_pred CCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc--ee-EEecCCCC--CeeEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 461 GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ--PL-RIMAGHLS--DVDCVRWHINCNYIATGSSDKTVRLWDVS 535 (656)
Q Consensus 461 ~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~--~~-~~~~~~~~--~V~~v~~~p~~~~l~tgs~dg~V~iwd~~ 535 (656)
+..-++..++|+++|..||+|+.||.|.+|+..... +. ..-..|.. .|+||+|+++|++|++-+.|+++++||++
T Consensus 315 g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 315 GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence 234578999999999999999999999999975432 22 23346776 89999999999999999999999999999
Q ss_pred CC-eeEEEEecCC--CCeEEEEEcCCCCEEEEEE------CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEE
Q 006220 536 SG-ECVRIFIGHR--SMILSLAMSPDGRYMASGD------EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLAS 606 (656)
Q Consensus 536 ~~-~~~~~~~~h~--~~i~~l~~sp~g~~L~s~~------~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s 606 (656)
+. +++.++.+-. -+-+.++|||+.++|++|+ ..|.+.+||..+...+.++.-.+..|..+.|+|.-+.|+.
T Consensus 395 q~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~ 474 (641)
T KOG0772|consen 395 QFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFA 474 (641)
T ss_pred ccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheee
Confidence 75 5566555433 3567889999999999986 3578999999999999988877888999999999888999
Q ss_pred EECCCcEEEEe
Q 006220 607 GSADCTVKLWD 617 (656)
Q Consensus 607 gs~Dg~I~iWd 617 (656)
|+.||+++||-
T Consensus 475 gsgdG~~~vyY 485 (641)
T KOG0772|consen 475 GSGDGTAHVYY 485 (641)
T ss_pred ecCCCceEEEE
Confidence 99999999864
No 89
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=3.6e-25 Score=221.13 Aligned_cols=247 Identities=21% Similarity=0.352 Sum_probs=217.9
Q ss_pred EEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (656)
Q Consensus 344 ~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 423 (656)
+.++.+|...|+.+.|+++...+++++.|..|+||..... ........|.++
T Consensus 254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~----------------------------s~~~~~~~h~~~ 305 (506)
T KOG0289|consen 254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS----------------------------SEPTSSRPHEEP 305 (506)
T ss_pred hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc----------------------------cCcccccccccc
Confidence 3467888999999999999999999999999999997641 123445679999
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeC--CCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 006220 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (656)
Q Consensus 424 V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~--h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~ 501 (656)
|+.+..+|.|.||++++.||+..+.|++++.++..... ..-.+++.+|+|||..|.+|+.||.+++||+..+..+..|
T Consensus 306 V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~F 385 (506)
T KOG0289|consen 306 VTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKF 385 (506)
T ss_pred ceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccC
Confidence 99999999999999999999999999999988776654 3345899999999999999999999999999999999999
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCC-CCeEEEEEcCCCCEEEEEECCCcEEEEeC--CC
Q 006220 502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-SMILSLAMSPDGRYMASGDEDGTIMMWDL--AS 578 (656)
Q Consensus 502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~-~~i~~l~~sp~g~~L~s~~~dg~I~iwD~--~~ 578 (656)
.+|.++|..++|+.||-||++++.|+.|++||+|.-+...++.-.. ..+.++.|.+.|.+|+.++.|=.|++++- .+
T Consensus 386 pght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~ 465 (506)
T KOG0289|consen 386 PGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKS 465 (506)
T ss_pred CCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccccc
Confidence 9999999999999999999999999999999999988877776433 36999999999999999988766666662 36
Q ss_pred CeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618 (656)
Q Consensus 579 ~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~ 618 (656)
+.++..+..|.+..+++.|....++++++|.|..++++.+
T Consensus 466 W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 466 WTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 7788888889999999999999999999999999988765
No 90
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.7e-25 Score=214.99 Aligned_cols=247 Identities=25% Similarity=0.450 Sum_probs=217.4
Q ss_pred EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
.+.+|.++|+.++-......+.+++.|.+-+||.+.. +.....+.||.+.|.
T Consensus 143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es----------------------------g~CL~~Y~GH~GSVN 194 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLES----------------------------GACLATYTGHTGSVN 194 (481)
T ss_pred hhcccccceeeehhhcCCcceeecccccceeEEeecc----------------------------ccceeeeccccccee
Confidence 4678999999999988888999999999999999986 446677899999999
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEec------c------------------------------C----CceeEEeeCCCcc
Q 006220 426 SASFSPLGDFILSSSADTTIRLWST------K------------------------------L----NANLVCYKGHNYP 465 (656)
Q Consensus 426 ~l~~spd~~~L~s~s~Dg~I~lwd~------~------------------------------~----~~~~~~~~~h~~~ 465 (656)
+++|++.+.++++++.|++-.||.. . . ..++..+.+|...
T Consensus 195 sikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~v 274 (481)
T KOG0300|consen 195 SIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAV 274 (481)
T ss_pred eEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccc
Confidence 9999999999999999999999961 0 0 0124567889999
Q ss_pred EEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC-eeEEEEe
Q 006220 466 VWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-ECVRIFI 544 (656)
Q Consensus 466 V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~-~~~~~~~ 544 (656)
|.+..|-..|..+++++.|++..+||++++.++..+.||....+.++-||+.+++++++.|.+.|+||.+.. ..+..|.
T Consensus 275 V~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ 354 (481)
T KOG0300|consen 275 VSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ 354 (481)
T ss_pred eEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999853 5688999
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe-eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220 545 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR-CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 545 ~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~-~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
||...|+++.|..+ ..+++|+.|.+|++||+++.+ ++.+++ -.++++.++.+..+.+++.--.+..|++||+....
T Consensus 355 GHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 355 GHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred ccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence 99999999999876 468899999999999998764 555554 35678999999988899988888999999997644
No 91
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=1.4e-25 Score=215.07 Aligned_cols=215 Identities=26% Similarity=0.469 Sum_probs=188.2
Q ss_pred eeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccC------------C------ceeEEeeCCCccEEEEEEecC
Q 006220 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL------------N------ANLVCYKGHNYPVWDVQFNPQ 474 (656)
Q Consensus 413 ~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~------------~------~~~~~~~~h~~~V~~l~~sp~ 474 (656)
....+..|.+++.+.+|+|||.++++||.|..|+|.|+.. + -.+.++-.|..+|.++.|+|.
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 4456778999999999999999999999999999999761 1 124566679999999999999
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEec--CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEE---ecCCCC
Q 006220 475 GHYFASSSHDRTARIWSMDRIQPLRIMA--GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF---IGHRSM 549 (656)
Q Consensus 475 ~~~l~sgs~Dg~i~lwd~~~~~~~~~~~--~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~---~~h~~~ 549 (656)
...|++|+.|++|+++|+......+-+. ....+|.++.|||.|.+|++|+.-.++++||+.+.+|...- .+|.+.
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a 263 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA 263 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence 9999999999999999998654443332 24568999999999999999999999999999998886543 368899
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeee-CCC-ccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220 550 ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-GHT-SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 550 i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~-~h~-~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
|+++.+|+.|++.++|+.||.|+|||--+++|+.++. .|. ..|.+..|..+|+++++.|.|..+++|.+.++..+...
T Consensus 264 i~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY 343 (430)
T ss_pred eeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence 9999999999999999999999999999999999886 566 67999999999999999999999999999999887655
No 92
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=6.2e-25 Score=230.78 Aligned_cols=254 Identities=23% Similarity=0.407 Sum_probs=215.3
Q ss_pred ceecCCCCCCcee-EEEEeeCCCCeEE-EEEcC-CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCC
Q 006220 331 RVHLSSAALPSVS-FYTFINTHNGLNC-ASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP 407 (656)
Q Consensus 331 ~v~l~~~~~ps~~-~~~~~~~~~~V~~-l~fs~-dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (656)
.+++|........ ...+.++.+-|.+ +++-+ ++-.+++|+.|++|.+|.+..
T Consensus 36 t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~------------------------- 90 (745)
T KOG0301|consen 36 TVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQ------------------------- 90 (745)
T ss_pred ceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCC-------------------------
Confidence 4666765333222 2345667777777 88875 455699999999999999875
Q ss_pred CCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcE
Q 006220 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTA 487 (656)
Q Consensus 408 ~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i 487 (656)
..++..+.||...|.|++...++. ++|||.|.++++|.. +++...+.+|+.+||.+..-|++ .++|||.|.+|
T Consensus 91 ---~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtI 163 (745)
T KOG0301|consen 91 ---AEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTI 163 (745)
T ss_pred ---CCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCccee
Confidence 345677899999999999887777 999999999999987 46667789999999999999987 89999999999
Q ss_pred EEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 006220 488 RIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (656)
Q Consensus 488 ~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~ 567 (656)
++|.- ++.+++|.+|..-|..+++-+++ .+++++.||.|++|++ +|+++..+.+|+.-|.++...+++..++++++
T Consensus 164 klWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gE 239 (745)
T KOG0301|consen 164 KLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGE 239 (745)
T ss_pred eeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecC
Confidence 99986 67889999999999999998765 5788999999999998 89999999999999999998889999999999
Q ss_pred CCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCc
Q 006220 568 DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (656)
Q Consensus 568 dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~ 623 (656)
|++++||+.. .+.+.+......||++.+-++|. +++|++||.||||.......
T Consensus 240 DrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R~ 292 (745)
T KOG0301|consen 240 DRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDRK 292 (745)
T ss_pred CceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccccc
Confidence 9999999975 77887776777999999988886 67788999999999885443
No 93
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.2e-25 Score=207.71 Aligned_cols=249 Identities=24% Similarity=0.448 Sum_probs=203.9
Q ss_pred eeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEE
Q 006220 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (656)
Q Consensus 348 ~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 427 (656)
..|.+.|..+...--|+.||++++|++|+|+...... .......+.||++||..+
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~-------------------------~s~ll~~L~Gh~GPVwqv 62 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNG-------------------------QSKLLAELTGHSGPVWKV 62 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCC-------------------------CceeeeEecCCCCCeeEE
Confidence 3456667777777779999999999999999987521 235677899999999999
Q ss_pred EEcc--CCCEEEEEeCCCeEEEEeccCCc--eeEEeeCCCccEEEEEEecC--CCEEEEEECCCcEEEEECCCC---cee
Q 006220 428 SFSP--LGDFILSSSADTTIRLWSTKLNA--NLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRI---QPL 498 (656)
Q Consensus 428 ~~sp--d~~~L~s~s~Dg~I~lwd~~~~~--~~~~~~~h~~~V~~l~~sp~--~~~l~sgs~Dg~i~lwd~~~~---~~~ 498 (656)
+|.. -|.+|++|+.||.|.||.-.+++ ....+..|...|++++|-|+ |-.|++++.||.|.+.+.+.. ...
T Consensus 63 ~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ 142 (299)
T KOG1332|consen 63 AWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTS 142 (299)
T ss_pred eecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccch
Confidence 9976 78999999999999999987663 34556679999999999995 667999999999999998764 234
Q ss_pred EEecCCCCCeeEEEEcCC---C-----------CEEEEEECCCcEEEEeCCCCe--eEEEEecCCCCeEEEEEcCCC---
Q 006220 499 RIMAGHLSDVDCVRWHIN---C-----------NYIATGSSDKTVRLWDVSSGE--CVRIFIGHRSMILSLAMSPDG--- 559 (656)
Q Consensus 499 ~~~~~~~~~V~~v~~~p~---~-----------~~l~tgs~dg~V~iwd~~~~~--~~~~~~~h~~~i~~l~~sp~g--- 559 (656)
++...|.-.|++++|.|. | ..|++|+.|..|.||+..+++ .-+.+.+|...|..++|.|.-
T Consensus 143 ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~ 222 (299)
T KOG1332|consen 143 KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLP 222 (299)
T ss_pred hhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCC
Confidence 556689999999999985 4 569999999999999998763 345688999999999999963
Q ss_pred -CEEEEEECCCcEEEEeCCCCe---eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 560 -RYMASGDEDGTIMMWDLASGR---CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (656)
Q Consensus 560 -~~L~s~~~dg~I~iwD~~~~~---~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~ 621 (656)
.+||+++.||++.||-.+... ....+......++.++||..|++|+.++.|+.|.+|.-...
T Consensus 223 ~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 223 KSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred ceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence 589999999999999865221 11122335578999999999999999999999999986543
No 94
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.2e-25 Score=236.73 Aligned_cols=210 Identities=26% Similarity=0.448 Sum_probs=176.9
Q ss_pred Eee-cCccCEEEEEEccCCCEEEEEeCCCeEEEEeccC------------------------------------------
Q 006220 416 LYQ-GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL------------------------------------------ 452 (656)
Q Consensus 416 ~l~-~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~------------------------------------------ 452 (656)
.+. .|.+.|+++.||+||+|||+|+.||.|+||.+..
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 344 8999999999999999999999999999998653
Q ss_pred ------------------CceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEc
Q 006220 453 ------------------NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWH 514 (656)
Q Consensus 453 ------------------~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~ 514 (656)
.+++..+.||...|.++.||.+ ++|+++|.|.||++|++....++..|. |..-|+||+|+
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFn 418 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFN 418 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEec
Confidence 0112336789999999999964 589999999999999999999999997 99999999999
Q ss_pred C-CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeee--CC---
Q 006220 515 I-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM--GH--- 588 (656)
Q Consensus 515 p-~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~--~h--- 588 (656)
| |.+|+++|+-||.||||++...+.+.- ..-..-|++++|+|||++.+.|+.+|.+++|++...+....+. .|
T Consensus 419 PvDDryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 419 PVDDRYFISGSLDGKVRLWSISDKKVVDW-NDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK 497 (712)
T ss_pred ccCCCcEeecccccceEEeecCcCeeEee-hhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence 9 789999999999999999987776654 3444789999999999999999999999999998777665543 11
Q ss_pred ---CccEEEEEEcCC-CCEEEEEECCCcEEEEeCCCCCceeecc
Q 006220 589 ---TSCVWTLAYSCE-GSLLASGSADCTVKLWDVTTSTKVLKTE 628 (656)
Q Consensus 589 ---~~~V~~l~~s~~-~~~l~sgs~Dg~I~iWd~~~~~~~~~~~ 628 (656)
...|+++.|.|. ...+++.+.|..|||+|.+....+.+..
T Consensus 498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfK 541 (712)
T KOG0283|consen 498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFK 541 (712)
T ss_pred cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhc
Confidence 237999999874 3457778899999999997766655543
No 95
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=9.7e-24 Score=202.81 Aligned_cols=249 Identities=22% Similarity=0.406 Sum_probs=199.4
Q ss_pred eeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEE
Q 006220 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (656)
Q Consensus 348 ~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 427 (656)
.+|.+-|+|+.|.+.|+.+|+|+.|++|+|||... +.+..........|.+.|..+
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~------------------------~s~~W~~Ts~Wrah~~Si~rV 65 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTS------------------------DSGTWSCTSSWRAHDGSIWRV 65 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccC------------------------CCCceEEeeeEEecCCcEEEE
Confidence 45677799999999999999999999999999753 223345667788999999999
Q ss_pred EEcc--CCCEEEEEeCCCeEEEEecc---------CCceeEEeeCCCccEEEEEEec--CCCEEEEEECCCcEEEEECCC
Q 006220 428 SFSP--LGDFILSSSADTTIRLWSTK---------LNANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIWSMDR 494 (656)
Q Consensus 428 ~~sp--d~~~L~s~s~Dg~I~lwd~~---------~~~~~~~~~~h~~~V~~l~~sp--~~~~l~sgs~Dg~i~lwd~~~ 494 (656)
.|.+ -|+.+++||.|+++.||.-. .+....++......|++++|.| -|-.+++++.||.+|||+.-.
T Consensus 66 ~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~d 145 (361)
T KOG2445|consen 66 VWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPD 145 (361)
T ss_pred EecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCC
Confidence 9976 47899999999999999752 2233455666788999999999 577899999999999998654
Q ss_pred Ccee------EEec-------CCCCCeeEEEEcCC---CCEEEEEECC-----CcEEEEeCCCC----eeEEEEecCCCC
Q 006220 495 IQPL------RIMA-------GHLSDVDCVRWHIN---CNYIATGSSD-----KTVRLWDVSSG----ECVRIFIGHRSM 549 (656)
Q Consensus 495 ~~~~------~~~~-------~~~~~V~~v~~~p~---~~~l~tgs~d-----g~V~iwd~~~~----~~~~~~~~h~~~ 549 (656)
.-.+ ..+. .+..+..|+.|+|. ..+||+|+.+ +.+.||....+ ..+..+.+|..+
T Consensus 146 p~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp 225 (361)
T KOG2445|consen 146 PMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP 225 (361)
T ss_pred ccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc
Confidence 3222 1121 35667889999973 4678888766 57888876543 345567799999
Q ss_pred eEEEEEcCC----CCEEEEEECCCcEEEEeCCCC--------------------eeeEeeeCCCccEEEEEEcCCCCEEE
Q 006220 550 ILSLAMSPD----GRYMASGDEDGTIMMWDLASG--------------------RCVTPLMGHTSCVWTLAYSCEGSLLA 605 (656)
Q Consensus 550 i~~l~~sp~----g~~L~s~~~dg~I~iwD~~~~--------------------~~~~~~~~h~~~V~~l~~s~~~~~l~ 605 (656)
|+.|+|.|+ ...||+++.|| |+||.+... +.+..+.+|.+.|+.+.|+-.|.+|+
T Consensus 226 I~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLs 304 (361)
T KOG2445|consen 226 IRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILS 304 (361)
T ss_pred ceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEe
Confidence 999999996 34799999999 999998631 24455678999999999999999999
Q ss_pred EEECCCcEEEEeCCCC
Q 006220 606 SGSADCTVKLWDVTTS 621 (656)
Q Consensus 606 sgs~Dg~I~iWd~~~~ 621 (656)
+.|.||+||+|...-.
T Consensus 305 StGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 305 STGDDGCVRLWKANYN 320 (361)
T ss_pred ecCCCceeeehhhhhh
Confidence 9999999999987543
No 96
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.1e-23 Score=202.02 Aligned_cols=259 Identities=22% Similarity=0.383 Sum_probs=216.0
Q ss_pred ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCCcccccccCCCCCCCCCCccccC
Q 006220 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFS--DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG 406 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~--dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (656)
.+.++|++...+. +..+...++-++.+++|....+.+..++. |.+||..++.+
T Consensus 35 dDsl~LYd~~~g~-~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d------------------------ 89 (311)
T KOG1446|consen 35 DDSLRLYDSLSGK-QVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD------------------------ 89 (311)
T ss_pred CCeEEEEEcCCCc-eeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeec------------------------
Confidence 3456666654433 33355566678999999887777777766 88899999875
Q ss_pred CCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCc
Q 006220 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRT 486 (656)
Q Consensus 407 ~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~ 486 (656)
.+.++.+.||...|.+++.+|-+..++|++.|++|++||++..++...+.....+| ++|.|.|-+||++.....
T Consensus 90 ----NkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~ 163 (311)
T KOG1446|consen 90 ----NKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANGSEL 163 (311)
T ss_pred ----CceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecCCCe
Confidence 46788899999999999999999999999999999999999888888776555554 789999999999998889
Q ss_pred EEEEECCCC--ceeEEec---CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCe---EEEEEcCC
Q 006220 487 ARIWSMDRI--QPLRIMA---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMI---LSLAMSPD 558 (656)
Q Consensus 487 i~lwd~~~~--~~~~~~~---~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i---~~l~~sp~ 558 (656)
|++||++.. .|..++. +.....+.+.|+|+|++|+.++..+.+++.|.-+|.....+.++...- ...+|+||
T Consensus 164 IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPd 243 (311)
T KOG1446|consen 164 IKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPD 243 (311)
T ss_pred EEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCC
Confidence 999999864 3555554 335678999999999999999999999999999999999998876533 56789999
Q ss_pred CCEEEEEECCCcEEEEeCCCCeeeEeeeC-CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 559 GRYMASGDEDGTIMMWDLASGRCVTPLMG-HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 559 g~~L~s~~~dg~I~iwD~~~~~~~~~~~~-h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
|+++++|+.||+|.+|++.+|..+..+.+ +.+++.++.|+|.-.++++++ ..+.+|=...
T Consensus 244 s~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~ 304 (311)
T KOG1446|consen 244 SKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPDE 304 (311)
T ss_pred CcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEeccc
Confidence 99999999999999999999999999998 689999999999877777664 5788886543
No 97
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=1.6e-24 Score=227.75 Aligned_cols=241 Identities=24% Similarity=0.453 Sum_probs=209.7
Q ss_pred EEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (656)
Q Consensus 345 ~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 424 (656)
..+.+|...|..+++.+. ..+++|+.||++++|+-... .......+.+|.+-|
T Consensus 8 ~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~--------------------------~~l~~~~~~~~~g~i 60 (745)
T KOG0301|consen 8 HELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGK--------------------------QYLETHAFEGPKGFI 60 (745)
T ss_pred EEeccCccchheeEecCC-eEEeecCCCCceeeeeccCc--------------------------ccccceecccCccee
Confidence 357889999988887654 47888999999999996431 122334566788887
Q ss_pred EE-EEEcc-CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec
Q 006220 425 YS-ASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA 502 (656)
Q Consensus 425 ~~-l~~sp-d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~ 502 (656)
.+ +++.+ ++-.+++|+.|++|.+|......++..+++|...|++++...++. +++||.|.++++|-.. +....+.
T Consensus 61 ~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~ 137 (745)
T KOG0301|consen 61 ANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQ 137 (745)
T ss_pred eccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch--hhhcccC
Confidence 77 88876 334599999999999999999999999999999999999887777 9999999999999764 4566689
Q ss_pred CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeee
Q 006220 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582 (656)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~ 582 (656)
+|...|.+++.-|.+ .++|||.|++|++|. .++++++|.+|...|..+++-+++ .+++++.||.|++|++ +|.++
T Consensus 138 gH~asVWAv~~l~e~-~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l 212 (745)
T KOG0301|consen 138 GHTASVWAVASLPEN-TYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVL 212 (745)
T ss_pred CcchheeeeeecCCC-cEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCcee
Confidence 999999999999887 889999999999997 489999999999999999999875 5778899999999999 89999
Q ss_pred EeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 583 ~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
.++.+|+..|++++...++..++|+|.|++++||+...
T Consensus 213 ~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e 250 (745)
T KOG0301|consen 213 LEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDE 250 (745)
T ss_pred eeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCc
Confidence 99999999999999888889999999999999999873
No 98
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=3.1e-26 Score=241.27 Aligned_cols=208 Identities=28% Similarity=0.591 Sum_probs=197.3
Q ss_pred eecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 006220 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ 496 (656)
Q Consensus 417 l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~ 496 (656)
...|+..|.|+..-..++.+++|+.|..+.+|.+.....+..+.+|..+|-++.|++....+++|+.+|+|++||++..+
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk 103 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK 103 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence 34688889999887778999999999999999998888888899999999999999999999999999999999999999
Q ss_pred eeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (656)
Q Consensus 497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~ 576 (656)
.++.+.+|...+..+.|||-+.|.+.|+.|+.+.+||++...|...+.+|...+.++.|+|+|+|+++|++|..++|||+
T Consensus 104 ~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~ 183 (825)
T KOG0267|consen 104 IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDL 183 (825)
T ss_pred hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220 577 ASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624 (656)
Q Consensus 577 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~ 624 (656)
..|+.+..|..|.+.|.++.|+|..-++++||.|++|++||+++-..+
T Consensus 184 ~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I 231 (825)
T KOG0267|consen 184 TAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVI 231 (825)
T ss_pred cccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEe
Confidence 999999999999999999999999999999999999999999875544
No 99
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.6e-24 Score=218.27 Aligned_cols=239 Identities=24% Similarity=0.428 Sum_probs=201.4
Q ss_pred eCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEE
Q 006220 349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (656)
Q Consensus 349 ~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 428 (656)
.|...+.|++.|+||+|||+|+.|..|.||+..+ ......+.+|.+.|.+++
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t----------------------------~ehv~~~~ghr~~V~~L~ 251 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDT----------------------------LEHVKVFKGHRGAVSSLA 251 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcc----------------------------cchhhcccccccceeeee
Confidence 7788899999999999999999999999999886 234455889999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCe
Q 006220 429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDV 508 (656)
Q Consensus 429 ~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V 508 (656)
|-.....|++++.|++|++|+++....+.++-+|...|.+|.-..-++.+-+|+.|+++++|++.. ....++.+|.+.+
T Consensus 252 fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~si 330 (479)
T KOG0299|consen 252 FRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSI 330 (479)
T ss_pred eecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCe
Confidence 998888999999999999999998888889999999999999888888888888999999999943 4455677899999
Q ss_pred eEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe-c-----------CCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220 509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-G-----------HRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (656)
Q Consensus 509 ~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~-~-----------h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~ 576 (656)
.|++|- |...+++|+.+|.|.+|++.+.+++.+.. . +..+|++++..|...++++|+.+|.|++|-+
T Consensus 331 dcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i 409 (479)
T KOG0299|consen 331 DCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKI 409 (479)
T ss_pred eeEEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEe
Confidence 999996 55689999999999999999888876653 1 2238999999999999999999999999999
Q ss_pred CCC----eeeEeeeCCCccEEEEEEcCCCCEEEEE-ECCCcEEEEeC
Q 006220 577 ASG----RCVTPLMGHTSCVWTLAYSCEGSLLASG-SADCTVKLWDV 618 (656)
Q Consensus 577 ~~~----~~~~~~~~h~~~V~~l~~s~~~~~l~sg-s~Dg~I~iWd~ 618 (656)
..+ .++..+. -.+.|++++|+++|..+++| +..-.+-=|-.
T Consensus 410 ~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 410 EDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWC 455 (479)
T ss_pred cCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeE
Confidence 887 3444443 56889999999999966555 44444444433
No 100
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.5e-24 Score=205.04 Aligned_cols=272 Identities=20% Similarity=0.326 Sum_probs=200.0
Q ss_pred EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCC------------------
Q 006220 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP------------------ 407 (656)
Q Consensus 346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 407 (656)
++.+|.+.|+|++||.||++||+++.|+.|+||++.......-...........+....+.+
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 46789999999999999999999999999999999753221110000000000000000000
Q ss_pred ------CCCce-------eeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecC
Q 006220 408 ------NGRKR-------SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ 474 (656)
Q Consensus 408 ------~~~~~-------~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~ 474 (656)
++... ......-|+-.|..+-....+.++++++.|..|.+|+++ |+.+..+......-+..+.||+
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~ 239 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD 239 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCC
Confidence 00000 111123456677777777788999999999999999999 8888888777777788999999
Q ss_pred CCEEEEEECCCcEEEEECC--------CCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-------Cee
Q 006220 475 GHYFASSSHDRTARIWSMD--------RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-------GEC 539 (656)
Q Consensus 475 ~~~l~sgs~Dg~i~lwd~~--------~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~-------~~~ 539 (656)
|+++++++..--+++|.+- .-..+..+.||.+.|..++|++++..++|.|.||++++||+.- ...
T Consensus 240 GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~ 319 (420)
T KOG2096|consen 240 GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKI 319 (420)
T ss_pred CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchH
Confidence 9999999999999999852 2234556789999999999999999999999999999999852 122
Q ss_pred EEEE----ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeee-CCCccEEEEEEcCCCCEEEEEECCCcEE
Q 006220 540 VRIF----IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-GHTSCVWTLAYSCEGSLLASGSADCTVK 614 (656)
Q Consensus 540 ~~~~----~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~sgs~Dg~I~ 614 (656)
++.+ ..-.+.-..+.++|+|+.|+.+.. ..+.++..++|+....+. .|...|.+++|+++|++++++| |..++
T Consensus 320 Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vr 397 (420)
T KOG2096|consen 320 LKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVR 397 (420)
T ss_pred hhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeee
Confidence 2222 112233347999999999988754 579999999988776665 6899999999999999999987 66788
Q ss_pred EEeCCC
Q 006220 615 LWDVTT 620 (656)
Q Consensus 615 iWd~~~ 620 (656)
+..-..
T Consensus 398 v~~ntp 403 (420)
T KOG2096|consen 398 VIRNTP 403 (420)
T ss_pred eecCCC
Confidence 876433
No 101
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.7e-24 Score=214.91 Aligned_cols=228 Identities=23% Similarity=0.412 Sum_probs=176.1
Q ss_pred eeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCce---eEEeeCCCccEEEEEEecCCCEEEEEECCCcEE
Q 006220 412 RSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN---LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR 488 (656)
Q Consensus 412 ~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~---~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~ 488 (656)
.....+..|+..|+-+.||++|++|||++.|.+..+|.+..... ..++.+|..+|.-+.||||.+|+++|+.|..+.
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS 294 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence 35567889999999999999999999999999999999876554 667789999999999999999999999999999
Q ss_pred EEECCCCceeEEec-CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCC-CCeEEEEEcCCCCEEEEEE
Q 006220 489 IWSMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-SMILSLAMSPDGRYMASGD 566 (656)
Q Consensus 489 lwd~~~~~~~~~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~-~~i~~l~~sp~g~~L~s~~ 566 (656)
+||..++...+.+. ++...+.+++|.|+|..+++|+.|++|..||+. |+....+.+-. ..|.+++.++||+++++.+
T Consensus 295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred eccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEe
Confidence 99999999888776 446789999999999999999999999999985 44444444433 4699999999999999988
Q ss_pred CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCC---------------------------------------------
Q 006220 567 EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEG--------------------------------------------- 601 (656)
Q Consensus 567 ~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~--------------------------------------------- 601 (656)
.|..|++++..+......+. -..+|++++.|.++
T Consensus 374 ~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~ 452 (519)
T KOG0293|consen 374 VDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGND 452 (519)
T ss_pred cccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCc
Confidence 88877777664432222111 11234444444444
Q ss_pred CEEEEEECCCcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEcC
Q 006220 602 SLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR 656 (656)
Q Consensus 602 ~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ftr 656 (656)
.++++|+.|+.|+||+..+++ ++..+++|+..|.+|+++|
T Consensus 453 ~fiaSGSED~kvyIWhr~sgk---------------ll~~LsGHs~~vNcVswNP 492 (519)
T KOG0293|consen 453 KFIASGSEDSKVYIWHRISGK---------------LLAVLSGHSKTVNCVSWNP 492 (519)
T ss_pred ceEEecCCCceEEEEEccCCc---------------eeEeecCCcceeeEEecCC
Confidence 455666666666666655544 5666777777777777764
No 102
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=1.2e-23 Score=197.99 Aligned_cols=233 Identities=22% Similarity=0.358 Sum_probs=203.6
Q ss_pred EeeCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 347 FINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 347 ~~~~~~~V~~l~fs~d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
..+|.+.|-.++|+|. ..++|+++.|..|++||....++. .... ..+.=.
T Consensus 60 ~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~----------------------------~~i~-~~~eni 110 (313)
T KOG1407|consen 60 YRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT----------------------------ARIE-TKGENI 110 (313)
T ss_pred ccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEE----------------------------EEee-ccCcce
Confidence 4577888999999874 778999999999999998753221 1111 223334
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCC
Q 006220 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL 505 (656)
Q Consensus 426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~ 505 (656)
-+.|+|+|.+++.++.|..|...|.++.+.....+ ....+.-++|+-++++|+.....|+|.|.....-+++..+..|.
T Consensus 111 ~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~ 189 (313)
T KOG1407|consen 111 NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP 189 (313)
T ss_pred EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCC
Confidence 57899999999999999999999999887766655 45567889999888888888888999999999999999999999
Q ss_pred CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEee
Q 006220 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL 585 (656)
Q Consensus 506 ~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~ 585 (656)
....||.|+|+|+|+|+|+.|..+.+||+..--|++.+..+.-+|..+.||.+|++||+|++|..|-|=++.+|..+..+
T Consensus 190 snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI 269 (313)
T KOG1407|consen 190 SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI 269 (313)
T ss_pred cceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred eCCCccEEEEEEcCCCCEEEEEECC
Q 006220 586 MGHTSCVWTLAYSCEGSLLASGSAD 610 (656)
Q Consensus 586 ~~h~~~V~~l~~s~~~~~l~sgs~D 610 (656)
. +.++...++|+|...+||-++.|
T Consensus 270 ~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 270 P-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred e-ccCCceeEEecCCCceeeEEecC
Confidence 4 67888999999999999988865
No 103
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.6e-24 Score=206.88 Aligned_cols=288 Identities=21% Similarity=0.321 Sum_probs=226.4
Q ss_pred ceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc---cccCCCC---CCCCCCc--
Q 006220 331 RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAV---SSGLQGE---NDTTPRE-- 402 (656)
Q Consensus 331 ~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~---~~~~~~~---~~~~~~~-- 402 (656)
...+|... ...|+.++.+|.+.|+|+.|++.+.++++++.|++-.||...-.-.... .....++ .......
T Consensus 171 TA~iWs~E-sg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d 249 (481)
T KOG0300|consen 171 TARIWSLE-SGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRD 249 (481)
T ss_pred ceeEEeec-cccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccc
Confidence 44566543 3467788999999999999999999999999999999998431110000 0000000 0000000
Q ss_pred ---cccC-CCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEE
Q 006220 403 ---DIIG-PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478 (656)
Q Consensus 403 ---~~~~-~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l 478 (656)
.... ...-......+.+|.+.|.+..|-..|+.+++++.|.+-.+||++++..+..+.||....+.++-+|..+++
T Consensus 250 ~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLV 329 (481)
T KOG0300|consen 250 TDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLV 329 (481)
T ss_pred cccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEE
Confidence 0000 011234566789999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCcEEEEECCC-CceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCe-eEEEEecCCCCeEEEEEc
Q 006220 479 ASSSHDRTARIWSMDR-IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-CVRIFIGHRSMILSLAMS 556 (656)
Q Consensus 479 ~sgs~Dg~i~lwd~~~-~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~-~~~~~~~h~~~i~~l~~s 556 (656)
++.+.|.+.++||++. ...+..|.||...|+++.|..+. .+++|+.|.+|++||+++.. ++.++. ..++++.++.+
T Consensus 330 vTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs 407 (481)
T KOG0300|consen 330 VTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVS 407 (481)
T ss_pred EEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee-cCCccceeEee
Confidence 9999999999999974 45678899999999999998654 68899999999999999764 455554 56789999999
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCeeeEee-----eCCCccEEEEEEcCCC--CEEEEEECCCcEEEEeCCCCC
Q 006220 557 PDGRYMASGDEDGTIMMWDLASGRCVTPL-----MGHTSCVWTLAYSCEG--SLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 557 p~g~~L~s~~~dg~I~iwD~~~~~~~~~~-----~~h~~~V~~l~~s~~~--~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
..+..|+.-..+..|++||++ |..+..+ .+|...|.|++|..+. .-|+++|.|..+.=|.+....
T Consensus 408 ~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 408 KGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred cCCceEEeccCCceEEEEecC-CCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 988899999999999999985 5555444 4788999999997653 358899999999999987643
No 104
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3e-24 Score=216.79 Aligned_cols=208 Identities=26% Similarity=0.438 Sum_probs=185.8
Q ss_pred CccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECC------
Q 006220 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD------ 493 (656)
Q Consensus 420 h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~------ 493 (656)
-.++|.|+.-+|+|.+|+.|+..|.|++|.+.+|..+..+..|-.+|+|+.|+-||.+|+|||.||.|.+|.+-
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999762
Q ss_pred ---CCceeEEecCCCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 006220 494 ---RIQPLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED 568 (656)
Q Consensus 494 ---~~~~~~~~~~~~~~V~~v~~~p~--~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d 568 (656)
+.++.+.+..|.-+|+.+...+. ..+++|+|.|.++++||+..|..+..+. ....+.+++.+|-++.+++|+.+
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~ 238 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEE 238 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCc
Confidence 46789999999999999988754 4689999999999999999999888776 45789999999999999999999
Q ss_pred CcEEEEeCCCC----------------eeeEeeeCCCc--cEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecc
Q 006220 569 GTIMMWDLASG----------------RCVTPLMGHTS--CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTE 628 (656)
Q Consensus 569 g~I~iwD~~~~----------------~~~~~~~~h~~--~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~ 628 (656)
|.|.+.++... ..+..+.+|.+ .|+|++.+-||++|++|+.||.|+|||+.+.+.+....
T Consensus 239 G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 239 GKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred ceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 99999887432 34455678887 99999999999999999999999999998877655444
No 105
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=8.6e-24 Score=222.73 Aligned_cols=238 Identities=24% Similarity=0.357 Sum_probs=202.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCC
Q 006220 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG 433 (656)
Q Consensus 354 V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~ 433 (656)
.+-++|+ ..+.||+| ....|.+|+-.... .......+...|+++.|+++|
T Consensus 180 ~nlldWs-s~n~laVa-lg~~vylW~~~s~~----------------------------v~~l~~~~~~~vtSv~ws~~G 229 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVA-LGQSVYLWSASSGS----------------------------VTELCSFGEELVTSVKWSPDG 229 (484)
T ss_pred hhHhhcc-cCCeEEEE-ecceEEEEecCCCc----------------------------eEEeEecCCCceEEEEECCCC
Confidence 4556788 56678887 55689999976421 122222237899999999999
Q ss_pred CEEEEEeCCCeEEEEeccCCceeEEeeC-CCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEE-ecCCCCCeeEE
Q 006220 434 DFILSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI-MAGHLSDVDCV 511 (656)
Q Consensus 434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~-~~~~~~~V~~v 511 (656)
.+|++|..+|.|.|||..+...+..+.+ |...|-+++|+ +..+.+|+.|+.|..+|++..+.... +.+|...|..+
T Consensus 230 ~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgL 307 (484)
T KOG0305|consen 230 SHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGL 307 (484)
T ss_pred CEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeee
Confidence 9999999999999999999999999998 99999999998 77899999999999999998776555 88999999999
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcC-CCCEEEEE--ECCCcEEEEeCCCCeeeEeeeCC
Q 006220 512 RWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP-DGRYMASG--DEDGTIMMWDLASGRCVTPLMGH 588 (656)
Q Consensus 512 ~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp-~g~~L~s~--~~dg~I~iwD~~~~~~~~~~~~h 588 (656)
+|+++++++|+|+.|+.+.|||.....+...+..|.+.|.+++|+| ....||+| +.|++|++||..+|..+..+. -
T Consensus 308 kws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-t 386 (484)
T KOG0305|consen 308 KWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-T 386 (484)
T ss_pred EECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-c
Confidence 9999999999999999999999988899999999999999999999 45688886 479999999999999887764 3
Q ss_pred CccEEEEEEcCCCCEEEEE--ECCCcEEEEeCCCCCce
Q 006220 589 TSCVWTLAYSCEGSLLASG--SADCTVKLWDVTTSTKV 624 (656)
Q Consensus 589 ~~~V~~l~~s~~~~~l~sg--s~Dg~I~iWd~~~~~~~ 624 (656)
.+.|.+|.|++..+-|+++ -.++.|.||++.+.+.+
T Consensus 387 gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~ 424 (484)
T KOG0305|consen 387 GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV 424 (484)
T ss_pred CCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee
Confidence 4679999999988766664 36778999999884433
No 106
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=7e-26 Score=238.60 Aligned_cols=238 Identities=26% Similarity=0.499 Sum_probs=218.8
Q ss_pred EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
.+..|...|.|+..-..++.+++|+.|-.+-+|.+... .....+.+|.++|-
T Consensus 23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp----------------------------~~i~S~~~hespIe 74 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP----------------------------NAITSLTGHESPIE 74 (825)
T ss_pred hhhhhhhhhceeeeeccceeeccCCCceeeccccccCC----------------------------chhheeeccCCcce
Confidence 34566777888888777899999999999999987641 12234889999999
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCC
Q 006220 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL 505 (656)
Q Consensus 426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~ 505 (656)
|+.|+++..+|++|+.+|+|++||+.....++++.+|...+.++.|+|.+.++++|+.|+.+.+||++...+...+.+|.
T Consensus 75 Sl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~ 154 (825)
T KOG0267|consen 75 SLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHT 154 (825)
T ss_pred eeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEee
Q 006220 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL 585 (656)
Q Consensus 506 ~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~ 585 (656)
..|.++.|+|+|++++.|+.|.+++|||...|+....|.+|.+.+..+.|+|..-++++|+.|++|++||+.+-..+...
T Consensus 155 ~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~ 234 (825)
T KOG0267|consen 155 RVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSG 234 (825)
T ss_pred ceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred eCCCccEEEEEEcCCCCEEEEEECCC
Q 006220 586 MGHTSCVWTLAYSCEGSLLASGSADC 611 (656)
Q Consensus 586 ~~h~~~V~~l~~s~~~~~l~sgs~Dg 611 (656)
......|.++.|+|++..+.+|....
T Consensus 235 ~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 235 KPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred CCccCCceeeeecCCceeeecCchhh
Confidence 77788999999999999998887653
No 107
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=4.1e-25 Score=212.76 Aligned_cols=203 Identities=24% Similarity=0.405 Sum_probs=184.0
Q ss_pred ecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEE--------eeCCCccEEEEEEecCCCEEEEEECCCcEEE
Q 006220 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC--------YKGHNYPVWDVQFNPQGHYFASSSHDRTARI 489 (656)
Q Consensus 418 ~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~--------~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~l 489 (656)
.+..+.+-|..|||||++|++||.||-|.+|+..+|+.... +.-+..+|.|++|+.|...+++|+.||.|++
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 35567788999999999999999999999999988865432 3347889999999999999999999999999
Q ss_pred EECCCCceeEEec-CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 006220 490 WSMDRIQPLRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED 568 (656)
Q Consensus 490 wd~~~~~~~~~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d 568 (656)
|.++++.+++.|. .|...|+|+.|+.++..+++++.|.++|+.-+++|+++..|.||.+.|+...|+++|.++++++.|
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 9999999999988 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCeeeEeeeC--CCccEEEEEEcC-CCCEEEEEECCCcEEEEeCCC
Q 006220 569 GTIMMWDLASGRCVTPLMG--HTSCVWTLAYSC-EGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 569 g~I~iwD~~~~~~~~~~~~--h~~~V~~l~~s~-~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
|+|++|+..++.|+.+++. ...+|.++..-| +...++.+...++|.|-++..
T Consensus 370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG 424 (508)
T KOG0275|consen 370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG 424 (508)
T ss_pred ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc
Confidence 9999999999999999874 346788888766 456788888899999988754
No 108
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=3.4e-23 Score=199.55 Aligned_cols=241 Identities=17% Similarity=0.254 Sum_probs=196.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (656)
Q Consensus 351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 430 (656)
...|+++.|+|.++.|++++.||++++|+.... .......|..++.+++|.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~-----------------------------~l~~~~~~~~plL~c~F~ 63 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN-----------------------------SLKLKFKHGAPLLDCAFA 63 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccch-----------------------------hhhhheecCCceeeeecc
Confidence 567999999999999999999999999998742 223344589999999998
Q ss_pred cCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeE
Q 006220 431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC 510 (656)
Q Consensus 431 pd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~ 510 (656)
+ ...+++|+-||.|+.+|+.++.... +..|..+|.||.+++....+++||+|++|++||.+.......+.. ...|.|
T Consensus 64 d-~~~~~~G~~dg~vr~~Dln~~~~~~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~ 140 (323)
T KOG1036|consen 64 D-ESTIVTGGLDGQVRRYDLNTGNEDQ-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYC 140 (323)
T ss_pred C-CceEEEeccCceEEEEEecCCccee-eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEE
Confidence 6 5678999999999999999876554 456999999999999889999999999999999998666655543 347777
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEE--ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC----eeeEe
Q 006220 511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIF--IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG----RCVTP 584 (656)
Q Consensus 511 v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~--~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~----~~~~~ 584 (656)
+.. .++.|++|+.|..|.+||+++....... ..-.-.+.|+++-|++.-.++++-||.|.+=.+... ..-..
T Consensus 141 ~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkya 218 (323)
T KOG1036|consen 141 MDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYA 218 (323)
T ss_pred Eec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhcee
Confidence 765 6789999999999999999986544321 223457899999999888999999999988776655 23334
Q ss_pred eeCCC---------ccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220 585 LMGHT---------SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625 (656)
Q Consensus 585 ~~~h~---------~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~ 625 (656)
++.|. -+|++++|+|-...|+|||.||.|.+||+.+.+++.
T Consensus 219 FkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~ 268 (323)
T KOG1036|consen 219 FKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLK 268 (323)
T ss_pred EEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhh
Confidence 45553 379999999999999999999999999998876543
No 109
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.3e-23 Score=225.36 Aligned_cols=244 Identities=20% Similarity=0.309 Sum_probs=210.5
Q ss_pred eeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEE
Q 006220 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (656)
Q Consensus 348 ~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 427 (656)
..|..+.+.++|.|+|.+|.+++.||.|++|+...... .-..+..+...|+++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e---------------------------~P~ti~~~g~~v~~i 62 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE---------------------------EPETIDISGELVSSI 62 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc---------------------------CCchhhccCceeEEE
Confidence 35778899999999999999999999999999764100 000111166778887
Q ss_pred EEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCC
Q 006220 428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD 507 (656)
Q Consensus 428 ~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~ 507 (656)
+-. +.+|++|+.+++|.+|....++.-..+...+-|+.+++|+-+|.+++.||.|-.|++.++.+......+.+|..+
T Consensus 63 a~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~ap 140 (933)
T KOG1274|consen 63 ACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAP 140 (933)
T ss_pred eec--ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCc
Confidence 765 559999999999999999988776666667789999999999999999999999999999999999999999999
Q ss_pred eeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecC--------CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH--------RSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579 (656)
Q Consensus 508 V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h--------~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~ 579 (656)
|.++.|+|++++||+.+.||.|++||+.++.+..++.+- ...+..++|+|+|..++..+.|+.|.+|+...+
T Consensus 141 Vl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w 220 (933)
T KOG1274|consen 141 VLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW 220 (933)
T ss_pred eeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc
Confidence 999999999999999999999999999998877665431 346778999999888888889999999999999
Q ss_pred eeeEeeeC--CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 580 RCVTPLMG--HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 580 ~~~~~~~~--h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
.....+.. +...+..++|+|+|+|||+++.||.|.|||+.+
T Consensus 221 e~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 221 ELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred eeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 98888764 445599999999999999999999999999996
No 110
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=4.3e-24 Score=223.99 Aligned_cols=245 Identities=23% Similarity=0.417 Sum_probs=212.0
Q ss_pred eeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEE
Q 006220 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (656)
Q Consensus 348 ~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 427 (656)
.+...++.|++.||+|++||+|..-|.++||++... ........|...|.|+
T Consensus 456 ~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l----------------------------~~~~~~eAHesEilcL 507 (1080)
T KOG1408|consen 456 CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL----------------------------EYTCFMEAHESEILCL 507 (1080)
T ss_pred cCcccceEEEEECCCcceecccCccCceEEEEehhh----------------------------hhhhheecccceeEEE
Confidence 345667999999999999999999999999999852 2344566899999999
Q ss_pred EEccC---CCEEEEEeCCCeEEEEeccCC-ceeEEeeCCCccEEEEEEecCC--CEEEEEECCCcEEEEECCCCceeEEe
Q 006220 428 SFSPL---GDFILSSSADTTIRLWSTKLN-ANLVCYKGHNYPVWDVQFNPQG--HYFASSSHDRTARIWSMDRIQPLRIM 501 (656)
Q Consensus 428 ~~spd---~~~L~s~s~Dg~I~lwd~~~~-~~~~~~~~h~~~V~~l~~sp~~--~~l~sgs~Dg~i~lwd~~~~~~~~~~ 501 (656)
.||.. .++|++++.|.-|.++|+... ..+.++.+|...|+++.|-..| ..+++++.|+.|.+-..+.....+.+
T Consensus 508 eyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f 587 (1080)
T KOG1408|consen 508 EYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLF 587 (1080)
T ss_pred eecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceec
Confidence 99863 468999999999999998744 4567888999999999999877 67899999998876554433333444
Q ss_pred cCC-----CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec---CCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 006220 502 AGH-----LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG---HRSMILSLAMSPDGRYMASGDEDGTIMM 573 (656)
Q Consensus 502 ~~~-----~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~---h~~~i~~l~~sp~g~~L~s~~~dg~I~i 573 (656)
..| ...+..++..|+..++++++.|+.|+|||+.+|+.++.|++ |.+....+...|.|.||++...|.++.+
T Consensus 588 ~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~ 667 (1080)
T KOG1408|consen 588 PRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCF 667 (1080)
T ss_pred cccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEE
Confidence 333 24578899999999999999999999999999999999975 5677888999999999999999999999
Q ss_pred EeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 574 WDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 574 wD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
+|+-+|+++.++.||...|+.+.|.+|-+.|++.+.||+|.||.+..
T Consensus 668 ~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 668 VDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 99999999999999999999999999999999999999999999865
No 111
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.8e-24 Score=215.38 Aligned_cols=242 Identities=19% Similarity=0.314 Sum_probs=204.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (656)
Q Consensus 350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 429 (656)
-.+.|.|++-+|+|.+|+.|+..|.|++|.+.+ +.....+.+|-.+|+|+.|
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss----------------------------G~LL~v~~aHYQ~ITcL~f 131 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSS----------------------------GILLNVLSAHYQSITCLKF 131 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEecc----------------------------ccHHHHHHhhccceeEEEE
Confidence 357899999999999999999999999999986 3344556789999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEecc---------CCceeEEeeCCCccEEEEEEecC--CCEEEEEECCCcEEEEECCCCcee
Q 006220 430 SPLGDFILSSSADTTIRLWSTK---------LNANLVCYKGHNYPVWDVQFNPQ--GHYFASSSHDRTARIWSMDRIQPL 498 (656)
Q Consensus 430 spd~~~L~s~s~Dg~I~lwd~~---------~~~~~~~~~~h~~~V~~l~~sp~--~~~l~sgs~Dg~i~lwd~~~~~~~ 498 (656)
+.||.+|+|||.||.|.+|++. +-..+..+..|+-+|+++...+. ..+++|+|.|.++++||+..+..+
T Consensus 132 s~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL 211 (476)
T KOG0646|consen 132 SDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL 211 (476)
T ss_pred eCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee
Confidence 9999999999999999999864 23457788899999999988764 468999999999999999999888
Q ss_pred EEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC----------------CeeEEEEecCCC--CeEEEEEcCCCC
Q 006220 499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS----------------GECVRIFIGHRS--MILSLAMSPDGR 560 (656)
Q Consensus 499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~----------------~~~~~~~~~h~~--~i~~l~~sp~g~ 560 (656)
..+. ....+.+++.+|-+..+++|+.+|.|.+.++.+ +..++.+.||.+ +|+|++++-||.
T Consensus 212 lti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt 290 (476)
T KOG0646|consen 212 LTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT 290 (476)
T ss_pred EEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCcc
Confidence 7776 457899999999999999999999999987743 234567889988 999999999999
Q ss_pred EEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEE-EECCCcEEEEeCCC
Q 006220 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLAS-GSADCTVKLWDVTT 620 (656)
Q Consensus 561 ~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s-gs~Dg~I~iWd~~~ 620 (656)
.|++|+.||.|+|||+.+.++++++..-.++|+.+.+.|-..-.+. -+..-.+-.|++..
T Consensus 291 lLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lkr 351 (476)
T KOG0646|consen 291 LLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLKR 351 (476)
T ss_pred EEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecccccCccCCchHhhc
Confidence 9999999999999999999999988767789999999774333332 33344566666654
No 112
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=4.4e-24 Score=216.24 Aligned_cols=259 Identities=20% Similarity=0.368 Sum_probs=214.7
Q ss_pred EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
..++|..-|.++.+|...+++.+| ..|.|+|||+........... ........-|.
T Consensus 414 ~tL~HGEvVcAvtIS~~trhVyTg-GkgcVKVWdis~pg~k~Pvsq-----------------------Ldcl~rdnyiR 469 (705)
T KOG0639|consen 414 NTLAHGEVVCAVTISNPTRHVYTG-GKGCVKVWDISQPGNKSPVSQ-----------------------LDCLNRDNYIR 469 (705)
T ss_pred hhhccCcEEEEEEecCCcceeEec-CCCeEEEeeccCCCCCCcccc-----------------------ccccCccccee
Confidence 345677778889999999999999 678999999985321111000 00112346688
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeccCCceeEE--eeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecC
Q 006220 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG 503 (656)
Q Consensus 426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~ 503 (656)
++..+|||+.|++|+.-.++.|||+...+.... +......+..++.+||.+..++|..||.|.|||+.+...++.|.|
T Consensus 470 SckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqG 549 (705)
T KOG0639|consen 470 SCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQG 549 (705)
T ss_pred eeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccC
Confidence 999999999999999999999999986655332 333345677899999999999999999999999999999999999
Q ss_pred CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeE
Q 006220 504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583 (656)
Q Consensus 504 ~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~ 583 (656)
|...+.||..+++|..|.||+-|.+||.||++++..+.... ..+.|.++..+|++.||+.|-..+.+.|... ++..-.
T Consensus 550 htDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~-skp~ky 627 (705)
T KOG0639|consen 550 HTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHT-SKPEKY 627 (705)
T ss_pred CCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEec-CCccce
Confidence 99999999999999999999999999999999987765432 4578999999999999999999999998876 444555
Q ss_pred eeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccc
Q 006220 584 PLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK 630 (656)
Q Consensus 584 ~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~ 630 (656)
.+.-|.+.|.++.|.+.|+++++.|.|+.+..|...-+..+....+.
T Consensus 628 qlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~ 674 (705)
T KOG0639|consen 628 QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES 674 (705)
T ss_pred eecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecccc
Confidence 66789999999999999999999999999999999998887766553
No 113
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=2.2e-24 Score=201.41 Aligned_cols=205 Identities=24% Similarity=0.445 Sum_probs=181.7
Q ss_pred eeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEE
Q 006220 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (656)
Q Consensus 348 ~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 427 (656)
+.|..-|.+++|+.|.++|++|+.+..+||||++... .....+.+|++.|..+
T Consensus 97 f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~---------------------------App~E~~ghtg~Ir~v 149 (334)
T KOG0278|consen 97 FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK---------------------------APPKEISGHTGGIRTV 149 (334)
T ss_pred hhhhheeeeEEecccchhhhccchHHHhhhhhccCCC---------------------------CCchhhcCCCCcceeE
Confidence 5677789999999999999999999999999998521 1233467899999999
Q ss_pred EEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCC
Q 006220 428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD 507 (656)
Q Consensus 428 ~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~ 507 (656)
.|....+.++|++.|++||+||.+++..+..+. ...+|.++.++++|+++.++ ..+.|.+||..+...+..+.. ...
T Consensus 150 ~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~-P~n 226 (334)
T KOG0278|consen 150 LWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKM-PCN 226 (334)
T ss_pred EEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccC-ccc
Confidence 999989999999999999999999999998887 56789999999999877665 558899999999988888764 366
Q ss_pred eeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEE-ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeee
Q 006220 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582 (656)
Q Consensus 508 V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~-~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~ 582 (656)
|.+...+|+...+++|+.|..++.||..+|..+..+ .+|.++|.|+.|+|+|...++|+.||+|+||.+..++..
T Consensus 227 V~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 227 VESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred cccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 899999999999999999999999999999999886 899999999999999999999999999999998766543
No 114
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.8e-24 Score=229.78 Aligned_cols=244 Identities=23% Similarity=0.390 Sum_probs=202.5
Q ss_pred eEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccC
Q 006220 354 LNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL 432 (656)
Q Consensus 354 V~~l~fs~-dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 432 (656)
+..+.|+. +.++||+++..|.|.+||+.... .......+..|...|.++.|++.
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~-------------------------rnk~l~~f~EH~Rs~~~ldfh~t 144 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSI-------------------------RNKLLTVFNEHERSANKLDFHST 144 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccc-------------------------cchhhhHhhhhccceeeeeeccC
Confidence 55566764 58899999999999999998521 12345567889999999999986
Q ss_pred C-CEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEec-CCCEEEEEECCCcEEEEECCCC-ceeEEecCCCCCee
Q 006220 433 G-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRI-QPLRIMAGHLSDVD 509 (656)
Q Consensus 433 ~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~lwd~~~~-~~~~~~~~~~~~V~ 509 (656)
. .+|++||.||+|++||++.......+.+....|.+|.|+| .+.+|+++...|.+++||++.. ++...+..|.++|.
T Consensus 145 ep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~ 224 (839)
T KOG0269|consen 145 EPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVL 224 (839)
T ss_pred CccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceE
Confidence 5 4789999999999999999999999999889999999999 6788999999999999999875 46677889999999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec-CCCCeEEEEEcCCCC-EEEEEE--CCCcEEEEeCCCC-eeeEe
Q 006220 510 CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG-HRSMILSLAMSPDGR-YMASGD--EDGTIMMWDLASG-RCVTP 584 (656)
Q Consensus 510 ~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~-h~~~i~~l~~sp~g~-~L~s~~--~dg~I~iwD~~~~-~~~~~ 584 (656)
|+.|||++.+||||+.|+.|+|||..+++.-....- ...++.++.|-|... .|++++ .|-.|+|||++.. -+...
T Consensus 225 c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t 304 (839)
T KOG0269|consen 225 CLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYAT 304 (839)
T ss_pred EEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccccccee
Confidence 999999999999999999999999987654433332 346899999999765 566654 6789999999754 45567
Q ss_pred eeCCCccEEEEEEcC-CCCEEEEEECCCcEEEEeCCCCC
Q 006220 585 LMGHTSCVWTLAYSC-EGSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 585 ~~~h~~~V~~l~~s~-~~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
+..|...++.++|.. |...+.+++.||+|..-.+++..
T Consensus 305 ~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 305 FLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred eeccCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 788999999999965 56688999999998776665543
No 115
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=5.6e-23 Score=207.48 Aligned_cols=242 Identities=20% Similarity=0.350 Sum_probs=192.7
Q ss_pred eeEEeecCccCEEEEEEccCCC-EEEEEeCCCeEEEEeccCCce----------eEEeeCCCccEEEEEEecC-CCEEEE
Q 006220 413 SYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNAN----------LVCYKGHNYPVWDVQFNPQ-GHYFAS 480 (656)
Q Consensus 413 ~~~~l~~h~~~V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~----------~~~~~~h~~~V~~l~~sp~-~~~l~s 480 (656)
.......|.+.|+.+.+-|... .+++++..+.|.|||...... -..+.+|...-.+++|++. ..++++
T Consensus 116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls 195 (422)
T KOG0264|consen 116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLS 195 (422)
T ss_pred EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEee
Confidence 4455667999999999999876 556778889999999764322 2367889887889999994 457999
Q ss_pred EECCCcEEEEECCCC-------ceeEEecCCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCC--CCeeEEEEecCCCCe
Q 006220 481 SSHDRTARIWSMDRI-------QPLRIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVS--SGECVRIFIGHRSMI 550 (656)
Q Consensus 481 gs~Dg~i~lwd~~~~-------~~~~~~~~~~~~V~~v~~~p~-~~~l~tgs~dg~V~iwd~~--~~~~~~~~~~h~~~i 550 (656)
|+.|++|.+||+... .+...+.+|...|..++||+- ...+++++.|+.+.|||+| +.++.....+|.+.|
T Consensus 196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~v 275 (422)
T KOG0264|consen 196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEV 275 (422)
T ss_pred ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCce
Confidence 999999999998643 345778899999999999984 5677889999999999999 566777888999999
Q ss_pred EEEEEcCC-CCEEEEEECCCcEEEEeCCCC-eeeEeeeCCCccEEEEEEcCC-CCEEEEEECCCcEEEEeCCCCCceeec
Q 006220 551 LSLAMSPD-GRYMASGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYSCE-GSLLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 551 ~~l~~sp~-g~~L~s~~~dg~I~iwD~~~~-~~~~~~~~h~~~V~~l~~s~~-~~~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
.|++|+|- +..||+|+.|++|.+||+++. +++..+.+|...|..+.|||+ ..+||+++.|+.+.|||+..-...+.
T Consensus 276 n~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~- 354 (422)
T KOG0264|consen 276 NCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS- 354 (422)
T ss_pred eEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC-
Confidence 99999994 567889999999999999874 578899999999999999995 67899999999999999987655443
Q ss_pred ccccCCccccccccccCCCCCeEEEEEc
Q 006220 628 EEKSGTNRLRSLKTLPTKSTPVYSLQVL 655 (656)
Q Consensus 628 ~~~~~~~~~~~l~~~p~~~~pv~sv~Ft 655 (656)
.+.....+++++..-.+|+.-|..++|.
T Consensus 355 ~eda~dgppEllF~HgGH~~kV~DfsWn 382 (422)
T KOG0264|consen 355 PEDAEDGPPELLFIHGGHTAKVSDFSWN 382 (422)
T ss_pred hhhhccCCcceeEEecCcccccccccCC
Confidence 1222233444555555555555555443
No 116
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=3.3e-24 Score=217.20 Aligned_cols=260 Identities=20% Similarity=0.311 Sum_probs=215.9
Q ss_pred cceecCCCCCC----ceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCcccc
Q 006220 330 NRVHLSSAALP----SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405 (656)
Q Consensus 330 ~~v~l~~~~~p----s~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (656)
..|++|+...| .+..+-..+..+-|.++...|||+.|++|+.-.++.|||+......
T Consensus 440 gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpr------------------- 500 (705)
T KOG0639|consen 440 GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR------------------- 500 (705)
T ss_pred CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcc-------------------
Confidence 35566765433 1222233455667999999999999999999999999999752111
Q ss_pred CCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCC
Q 006220 406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR 485 (656)
Q Consensus 406 ~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg 485 (656)
.-..+....-.+++++.+||.+..++|..||.|.|||+.+...+..+++|...+.||.++++|..|.||+-|.
T Consensus 501 -------ikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 501 -------IKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred -------hhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence 1111222334678899999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE
Q 006220 486 TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG 565 (656)
Q Consensus 486 ~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~ 565 (656)
+++.||++.+..+.... ..+.|.++.++|++.++++|-.++.|.+.... +.....+..|.+.|.++.|++.|+|+++.
T Consensus 574 tvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvSt 651 (705)
T KOG0639|consen 574 TVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVST 651 (705)
T ss_pred ceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeec
Confidence 99999999887665443 45789999999999999999999999998764 34444566799999999999999999999
Q ss_pred ECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220 566 DEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618 (656)
Q Consensus 566 ~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~ 618 (656)
+.|+.+..|...-|..+...+ ..++|.++.+|.|.++++||+.|..-.||.+
T Consensus 652 GkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 652 GKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred CchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 999999999999998887764 3468999999999999999999998888875
No 117
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=3.5e-23 Score=197.58 Aligned_cols=219 Identities=27% Similarity=0.450 Sum_probs=173.6
Q ss_pred eeCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220 348 INTHNGLNCASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (656)
Q Consensus 348 ~~~~~~V~~l~fs~-dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 426 (656)
-.|.++|+++.+.+ .|+|+++|+.||.|.|||++......... .+..........-..+|.-.|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~-------------li~k~~c~v~~~h~~~Hky~iss 106 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASG-------------LIAKHKCIVAKQHENGHKYAISS 106 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcc-------------ceeheeeeccccCCccceeeeee
Confidence 34668899999987 49999999999999999998632111000 00000000011123468889999
Q ss_pred EEEcc-CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecC---CCEEEEEECCCcEEEEECCCCceeEEec
Q 006220 427 ASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ---GHYFASSSHDRTARIWSMDRIQPLRIMA 502 (656)
Q Consensus 427 l~~sp-d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~---~~~l~sgs~Dg~i~lwd~~~~~~~~~~~ 502 (656)
+.|-| |...+.++|.|.++++||..+-+....++ ..+.|.+-+|||- ..++|+|..|-.|++.|+.++...+++.
T Consensus 107 ~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls 185 (397)
T KOG4283|consen 107 AIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS 185 (397)
T ss_pred eEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec
Confidence 99999 44588899999999999999988888776 4567888889883 3467888899999999999999999999
Q ss_pred CCCCCeeEEEEcCCCCE-EEEEECCCcEEEEeCCCC-eeEEEEe--------------cCCCCeEEEEEcCCCCEEEEEE
Q 006220 503 GHLSDVDCVRWHINCNY-IATGSSDKTVRLWDVSSG-ECVRIFI--------------GHRSMILSLAMSPDGRYMASGD 566 (656)
Q Consensus 503 ~~~~~V~~v~~~p~~~~-l~tgs~dg~V~iwd~~~~-~~~~~~~--------------~h~~~i~~l~~sp~g~~L~s~~ 566 (656)
||...|.+|.|+|...+ |++|+.||.|++||++.. .|.+++. .|.+.+..++|+.+|.++++++
T Consensus 186 GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g 265 (397)
T KOG4283|consen 186 GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG 265 (397)
T ss_pred cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc
Confidence 99999999999998776 578999999999999865 4544443 5677899999999999999999
Q ss_pred CCCcEEEEeCCCCe
Q 006220 567 EDGTIMMWDLASGR 580 (656)
Q Consensus 567 ~dg~I~iwD~~~~~ 580 (656)
.|..+++|+..+|+
T Consensus 266 td~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 266 TDDRIRVWNMESGR 279 (397)
T ss_pred CccceEEeecccCc
Confidence 99999999987764
No 118
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.6e-23 Score=199.30 Aligned_cols=239 Identities=20% Similarity=0.381 Sum_probs=195.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCC
Q 006220 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG 433 (656)
Q Consensus 354 V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~ 433 (656)
..|+.||+.|.+||+|+.||.|.|||+.+. ...+.+.+|..+|++++||++|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~----------------------------~iar~lsaH~~pi~sl~WS~dg 77 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF----------------------------RIARMLSAHVRPITSLCWSRDG 77 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc----------------------------chhhhhhccccceeEEEecCCC
Confidence 889999999999999999999999999862 2345678899999999999999
Q ss_pred CEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEE-------------------------------------------
Q 006220 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQ------------------------------------------- 470 (656)
Q Consensus 434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~------------------------------------------- 470 (656)
+.|+++|.|..|.+||+..+.++..++ ..+|||...
T Consensus 78 r~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sa 156 (405)
T KOG1273|consen 78 RKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSA 156 (405)
T ss_pred CEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccc
Confidence 999999999999999999888766554 233333322
Q ss_pred ----EecCCCEEEEEECCCcEEEEECCCCceeEEecCCC-CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC-------e
Q 006220 471 ----FNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL-SDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-------E 538 (656)
Q Consensus 471 ----~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~-~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~-------~ 538 (656)
|.+.|.|+++|...|.+.+++..+.+++..++-.. ..|..+.++..|+.|++-+.|+.||.|+++.- +
T Consensus 157 s~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e 236 (405)
T KOG1273|consen 157 SHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGE 236 (405)
T ss_pred ccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCC
Confidence 45567899999999999999999999988887655 78999999999999999999999999998621 1
Q ss_pred eE--EEEe--cCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeeeEeeeCCC-ccEEEEEEcCCCCEEEEEECCCc
Q 006220 539 CV--RIFI--GHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGRCVTPLMGHT-SCVWTLAYSCEGSLLASGSADCT 612 (656)
Q Consensus 539 ~~--~~~~--~h~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~sgs~Dg~ 612 (656)
+. ..+. -....-.+++||.+|.|+++|+ ....++||.-..|.+++.+.|.. .....+.|+|-...+++. ..|.
T Consensus 237 ~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~ 315 (405)
T KOG1273|consen 237 VEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGV 315 (405)
T ss_pred cChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCc
Confidence 11 1111 1123446789999999998876 44679999999999999999877 577889999998888887 7899
Q ss_pred EEEEeCCCCC
Q 006220 613 VKLWDVTTST 622 (656)
Q Consensus 613 I~iWd~~~~~ 622 (656)
|+||......
T Consensus 316 v~iw~~~~~e 325 (405)
T KOG1273|consen 316 VYIWAVVQVE 325 (405)
T ss_pred eEEEEeeccc
Confidence 9999986543
No 119
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.9e-23 Score=208.50 Aligned_cols=263 Identities=19% Similarity=0.295 Sum_probs=195.2
Q ss_pred EEEEEcC-------CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEE
Q 006220 355 NCASISQ-------DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (656)
Q Consensus 355 ~~l~fs~-------dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 427 (656)
.|++|-. -|+|+|.|+.|..|.|||+.-.......-.+ +... ... ..........-.+|+..|.++
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~L-Gs~~----sk~--~~k~~k~~~~~~gHTdavl~L 249 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTL-GSKA----SKK--KKKKGKRSNSASGHTDAVLAL 249 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceee-chhh----hhh--hhhhcccccccccchHHHHHH
Confidence 5677643 3789999999999999998742211000000 0000 000 000111222345799999999
Q ss_pred EEccCCC-EEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEec-CCCEEEEEECCCcEEEEECCCCceeEEecCCC
Q 006220 428 SFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMAGHL 505 (656)
Q Consensus 428 ~~spd~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~ 505 (656)
+|+..-+ .|+|||.|.+|++||+.++++..++..|...|.++.|+| ...++++|+.|+++.+.|.+........-...
T Consensus 250 s~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~ 329 (463)
T KOG0270|consen 250 SWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD 329 (463)
T ss_pred HhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec
Confidence 9987654 688999999999999999999999999999999999999 46789999999999999998543332222345
Q ss_pred CCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCC-eeEEEEecCCCCeEEEEEcCC-CCEEEEEECCCcEEEEeCCCCeee
Q 006220 506 SDVDCVRWHINC-NYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPD-GRYMASGDEDGTIMMWDLASGRCV 582 (656)
Q Consensus 506 ~~V~~v~~~p~~-~~l~tgs~dg~V~iwd~~~~-~~~~~~~~h~~~i~~l~~sp~-g~~L~s~~~dg~I~iwD~~~~~~~ 582 (656)
+.|..++|+|.. ..+++++.||+|+-+|+|+. +++.++..|.++|++|++++. -.++++++.|+.|++|++.....-
T Consensus 330 g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 330 GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred cceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence 789999999854 56788889999999999975 999999999999999999985 457889999999999998643321
Q ss_pred EeeeCCC---ccEEEEEEcCCC-CEEEEEECCCcEEEEeCCCCCcee
Q 006220 583 TPLMGHT---SCVWTLAYSCEG-SLLASGSADCTVKLWDVTTSTKVL 625 (656)
Q Consensus 583 ~~~~~h~---~~V~~l~~s~~~-~~l~sgs~Dg~I~iWd~~~~~~~~ 625 (656)
....|. +...|+++.|+- -.++.||..+.++|||+.+...+.
T Consensus 410 -~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 410 -SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred -ccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 111222 446677777764 467778888889999998876543
No 120
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=2.1e-21 Score=200.63 Aligned_cols=262 Identities=14% Similarity=0.147 Sum_probs=192.0
Q ss_pred cceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220 330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (656)
Q Consensus 330 ~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~L-a~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (656)
..+++|+..... +..++ .....+.+++|+|+++.+ ++++.++.|++||.....
T Consensus 11 ~~v~~~d~~t~~-~~~~~-~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~------------------------ 64 (300)
T TIGR03866 11 NTISVIDTATLE-VTRTF-PVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGE------------------------ 64 (300)
T ss_pred CEEEEEECCCCc-eEEEE-ECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCc------------------------
Confidence 356666654332 22233 344557889999999976 567788999999986421
Q ss_pred CCceeeEEeecCccCEEEEEEccCCCEEEE-EeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCC-c
Q 006220 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILS-SSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR-T 486 (656)
Q Consensus 409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s-~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg-~ 486 (656)
....+..+.. +..++|+|+++.+++ ++.++.|++||+.+...+..+.. ...+.+++|+|+|.++++++.++ .
T Consensus 65 ----~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~ 138 (300)
T TIGR03866 65 ----VIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNM 138 (300)
T ss_pred ----EEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCe
Confidence 1122222322 467899999997755 45689999999998877766653 33468899999999999998775 4
Q ss_pred EEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeeEEEEecCCC-------CeEEEEEcCC
Q 006220 487 ARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVRIFIGHRS-------MILSLAMSPD 558 (656)
Q Consensus 487 i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~~~~~~~~~h~~-------~i~~l~~sp~ 558 (656)
+..||..+.+....... ...+.+++|+|++.++++++ .++.|++||+.+++.+..+..+.. ....++|+|+
T Consensus 139 ~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d 217 (300)
T TIGR03866 139 AHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKD 217 (300)
T ss_pred EEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCC
Confidence 67789988776655432 23567899999999886554 689999999999988776653211 2346889999
Q ss_pred CCEEEE-EECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEE-ECCCcEEEEeCCCCCcee
Q 006220 559 GRYMAS-GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASG-SADCTVKLWDVTTSTKVL 625 (656)
Q Consensus 559 g~~L~s-~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sg-s~Dg~I~iWd~~~~~~~~ 625 (656)
|+++++ .+.++.|.+||+.+++.+..+. +...+.+++|+|+|++|+++ +.+|.|++||+.+++...
T Consensus 218 g~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~ 285 (300)
T TIGR03866 218 GKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIK 285 (300)
T ss_pred CCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence 998655 4556789999999888776553 44578999999999999886 468999999999877554
No 121
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=4.4e-23 Score=203.08 Aligned_cols=208 Identities=23% Similarity=0.422 Sum_probs=173.3
Q ss_pred EEeecCccCEEEEEEccCC--CEEEEEeCCCeEEEEecc----------------CCceeEEeeCCCccEEEEEEecC-C
Q 006220 415 TLYQGHSGPVYSASFSPLG--DFILSSSADTTIRLWSTK----------------LNANLVCYKGHNYPVWDVQFNPQ-G 475 (656)
Q Consensus 415 ~~l~~h~~~V~~l~~spd~--~~L~s~s~Dg~I~lwd~~----------------~~~~~~~~~~h~~~V~~l~~sp~-~ 475 (656)
....+|.+.|..+.-++-+ .+.++-+..|.|.||++. ....+.++.+|...-..++|||- .
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~ 224 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT 224 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence 4456788888888877755 466777889999999975 23457788899999999999993 3
Q ss_pred CEEEEEECCCcEEEEECCCCcee---EEecCCCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCC---eeEEEEecCCC
Q 006220 476 HYFASSSHDRTARIWSMDRIQPL---RIMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSG---ECVRIFIGHRS 548 (656)
Q Consensus 476 ~~l~sgs~Dg~i~lwd~~~~~~~---~~~~~~~~~V~~v~~~p~~-~~l~tgs~dg~V~iwd~~~~---~~~~~~~~h~~ 548 (656)
..+++|..-+.|++|...++.-. +.+.+|...|..++|+|.. ..|++||.||+|+|||+|.+ .++.+ +.|.+
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~s 303 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNS 303 (440)
T ss_pred cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCC
Confidence 34888888889999998775432 4566899999999999954 67899999999999999988 44444 78999
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCC---CeeeEeeeCCCccEEEEEEcCC-CCEEEEEECCCcEEEEeCCCCCc
Q 006220 549 MILSLAMSPDGRYMASGDEDGTIMMWDLAS---GRCVTPLMGHTSCVWTLAYSCE-GSLLASGSADCTVKLWDVTTSTK 623 (656)
Q Consensus 549 ~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~---~~~~~~~~~h~~~V~~l~~s~~-~~~l~sgs~Dg~I~iWd~~~~~~ 623 (656)
.|+.|.|+..-.+||+|+.||+++|||++. ++++..++.|..+|+++.|+|. ...|+++|.|..|.|||+.....
T Consensus 304 DVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 304 DVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred ceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence 999999999888999999999999999975 6788999999999999999994 56888999999999999976543
No 122
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=8.9e-22 Score=206.95 Aligned_cols=245 Identities=21% Similarity=0.344 Sum_probs=208.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeec-CccCEEEEE
Q 006220 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG-HSGPVYSAS 428 (656)
Q Consensus 350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~l~ 428 (656)
...+|.|++||.+.+.||+|-.+|.|.||++... ......+.+ -.+.|-+++
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~---------------------------w~~~~vi~g~~drsIE~L~ 76 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN---------------------------WFLEPVIHGPEDRSIESLA 76 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCC---------------------------ceeeEEEecCCCCceeeEE
Confidence 4678999999999999999999999999998741 112233334 457899999
Q ss_pred EccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee--EEecCCCC
Q 006220 429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL--RIMAGHLS 506 (656)
Q Consensus 429 ~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~--~~~~~~~~ 506 (656)
|+ ++..|+|.+.+|.|.-||+.+.+....+....++||+++.+|.+..++.|+.||.++.++....+.. +.+....+
T Consensus 77 W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~s 155 (691)
T KOG2048|consen 77 WA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKS 155 (691)
T ss_pred Ec-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccc
Confidence 99 4667889999999999999999999999999999999999999999999999998888887765543 34445668
Q ss_pred CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe--------cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--------GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (656)
Q Consensus 507 ~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~--------~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~ 578 (656)
.|.+++|+|++..|++|+.||.|++||+.++..+.... +...-|.++.|-.+ ..|++|.+.|+|.+||...
T Consensus 156 RvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~ 234 (691)
T KOG2048|consen 156 RVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIF 234 (691)
T ss_pred eEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccC
Confidence 99999999999999999999999999999998776322 12234667777655 5899999999999999999
Q ss_pred CeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCc
Q 006220 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (656)
Q Consensus 579 ~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~ 623 (656)
|.++..+..|.+.|.+++.++++.+++++|.|+.|.-+...+...
T Consensus 235 gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 235 GTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred cchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence 999999999999999999999999999999999999999887755
No 123
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.91 E-value=2.5e-23 Score=211.78 Aligned_cols=213 Identities=25% Similarity=0.411 Sum_probs=172.3
Q ss_pred eeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCce----eEEe-eCCCccEEEEEEecCCCEEEEEECCCcE
Q 006220 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN----LVCY-KGHNYPVWDVQFNPQGHYFASSSHDRTA 487 (656)
Q Consensus 413 ~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~----~~~~-~~h~~~V~~l~~sp~~~~l~sgs~Dg~i 487 (656)
.-..+.+|+..|.++++.|.|-.|++||.|.+|++||+..... ...+ ......|.+++|++.|..|++.+....+
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 4456889999999999999999999999999999999874322 1222 2345689999999999999999999999
Q ss_pred EEEECCCCceeEE------------ecCCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCee-EEEEe-----cCCC
Q 006220 488 RIWSMDRIQPLRI------------MAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGEC-VRIFI-----GHRS 548 (656)
Q Consensus 488 ~lwd~~~~~~~~~------------~~~~~~~V~~v~~~p~-~~~l~tgs~dg~V~iwd~~~~~~-~~~~~-----~h~~ 548 (656)
+++|-+....+.. -.||...++|.+|||. .+.++|++.||++|+||+...+. ..++. +-.-
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence 9999876544332 3489999999999994 56789999999999999986543 33332 2334
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCee--e-EeeeCCCc--cEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCc
Q 006220 549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRC--V-TPLMGHTS--CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (656)
Q Consensus 549 ~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~--~-~~~~~h~~--~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~ 623 (656)
+++.++|+++|++||+|..||+|.+||..+... . ..-.+|.. .|+|++||++|++|++-|.|+++++||++..++
T Consensus 319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk 398 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK 398 (641)
T ss_pred CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc
Confidence 789999999999999999999999999855422 1 22246775 899999999999999999999999999998765
Q ss_pred ee
Q 006220 624 VL 625 (656)
Q Consensus 624 ~~ 625 (656)
..
T Consensus 399 pL 400 (641)
T KOG0772|consen 399 PL 400 (641)
T ss_pred ch
Confidence 43
No 124
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=1.2e-22 Score=199.98 Aligned_cols=256 Identities=27% Similarity=0.425 Sum_probs=192.7
Q ss_pred eeCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 348 INTHNGLNCASISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 348 ~~~~~~V~~l~fs~d--g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
..|.+.++.+.-++- ..+.|+-+..|.|+||++...-..... ..........+.+..+.+|.+.=|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~------------~~~~~~~s~~~Pl~t~~ghk~EGy 215 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSE------------PGLEVKDSEFRPLFTFNGHKGEGY 215 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcC------------ccccccccccCceEEecccCccce
Confidence 455666666666654 455666677899999998752111110 011112244567778899999999
Q ss_pred EEEEccCCC-EEEEEeCCCeEEEEeccCCcee---EEeeCCCccEEEEEEec-CCCEEEEEECCCcEEEEECCCCc--ee
Q 006220 426 SASFSPLGD-FILSSSADTTIRLWSTKLNANL---VCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQ--PL 498 (656)
Q Consensus 426 ~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~~---~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~lwd~~~~~--~~ 498 (656)
+++|||-.. .|++|..-+.|++|...++.-. ..+.+|+..|-+++||| ....|++||.||+|+|||++.+. +-
T Consensus 216 ~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 216 GLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred eeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccce
Confidence 999999332 4888888889999998876543 34567999999999999 45689999999999999999872 22
Q ss_pred EEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC---CeeEEEEecCCCCeEEEEEcCC-CCEEEEEECCCcEEEE
Q 006220 499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS---GECVRIFIGHRSMILSLAMSPD-GRYMASGDEDGTIMMW 574 (656)
Q Consensus 499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~---~~~~~~~~~h~~~i~~l~~sp~-g~~L~s~~~dg~I~iw 574 (656)
.....|.++|+.|.|+....+||+|+.||+++|||+++ ++++..|+-|..+|++|.|+|. ...|++++.|.+|.||
T Consensus 296 ~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiW 375 (440)
T KOG0302|consen 296 VSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIW 375 (440)
T ss_pred eEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEE
Confidence 23368999999999999888999999999999999985 6788999999999999999995 4678889999999999
Q ss_pred eCCCCee----------------eEeeeCCC--ccEEEEEEcCC-CCEEEEEECCCcEEEE
Q 006220 575 DLASGRC----------------VTPLMGHT--SCVWTLAYSCE-GSLLASGSADCTVKLW 616 (656)
Q Consensus 575 D~~~~~~----------------~~~~~~h~--~~V~~l~~s~~-~~~l~sgs~Dg~I~iW 616 (656)
|+....- ..-+.-|. ..|..+.|+++ ..++++.+.||. .||
T Consensus 376 DlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf-nVf 435 (440)
T KOG0302|consen 376 DLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF-NVF 435 (440)
T ss_pred EeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce-eEE
Confidence 9853211 11122343 46778999985 457888888874 444
No 125
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.90 E-value=2.2e-21 Score=207.84 Aligned_cols=270 Identities=21% Similarity=0.361 Sum_probs=208.6
Q ss_pred ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (656)
..++++|+.... ...|++.++..+|+|+.=+|--..+|.|..+|.|.|+++..
T Consensus 181 ~G~lql~Nvrt~-K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~-------------------------- 233 (910)
T KOG1539|consen 181 QGRLQLWNVRTG-KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKF-------------------------- 233 (910)
T ss_pred CCcEEEEEeccC-cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEccc--------------------------
Confidence 457888887654 44678999999999999999999999999999999999975
Q ss_pred CCceeeEEeecCccCEEEEEEccCCC-EEEEEeCCCeEEEEeccCCceeEEee-CCCccEEEEEEecCCCEEEEEECCCc
Q 006220 409 GRKRSYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRT 486 (656)
Q Consensus 409 ~~~~~~~~l~~h~~~V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~l~~sp~~~~l~sgs~Dg~ 486 (656)
.+....+..-.+.|++++|..||+ .+++|+..|.+.+||++....+.... .|.+.|....|.|....+++++.|..
T Consensus 234 --dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnS 311 (910)
T KOG1539|consen 234 --DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNS 311 (910)
T ss_pred --CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCc
Confidence 234444444469999999999998 56677778999999998665554433 45555555555555555555555555
Q ss_pred EEEEECCCCc----------------------------------------------------------------------
Q 006220 487 ARIWSMDRIQ---------------------------------------------------------------------- 496 (656)
Q Consensus 487 i~lwd~~~~~---------------------------------------------------------------------- 496 (656)
+++|=.+++.
T Consensus 312 lk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~ 391 (910)
T KOG1539|consen 312 LKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTE 391 (910)
T ss_pred eeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchh
Confidence 5554222000
Q ss_pred -----ee--------------------------EE-----------ecCC------CCCeeEEEEcCCCCEEEEEECCCc
Q 006220 497 -----PL--------------------------RI-----------MAGH------LSDVDCVRWHINCNYIATGSSDKT 528 (656)
Q Consensus 497 -----~~--------------------------~~-----------~~~~------~~~V~~v~~~p~~~~l~tgs~dg~ 528 (656)
++ +. .-.+ ...+++++.++.|++.+.|++.|+
T Consensus 392 ~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~ 471 (910)
T KOG1539|consen 392 KLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGT 471 (910)
T ss_pred hhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCe
Confidence 00 00 0011 245788999999999999999999
Q ss_pred EEEEeCCCCeeEEEE---ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe-------------------------
Q 006220 529 VRLWDVSSGECVRIF---IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR------------------------- 580 (656)
Q Consensus 529 V~iwd~~~~~~~~~~---~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~------------------------- 580 (656)
|-+|++++|-....| ..|.++|+.++...-++.+++++.+|.+.+||.....
T Consensus 472 Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~ 551 (910)
T KOG1539|consen 472 IDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAI 551 (910)
T ss_pred EEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhh
Confidence 999999999988888 5899999999999889999999999999999986543
Q ss_pred ----------------eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220 581 ----------------CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 581 ----------------~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
.+..+.+|++.|++++|||||++|++++.|++|++||+.++..+-..
T Consensus 552 ~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~ 614 (910)
T KOG1539|consen 552 ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL 614 (910)
T ss_pred hcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE
Confidence 12234689999999999999999999999999999999998876433
No 126
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=5.3e-23 Score=214.81 Aligned_cols=266 Identities=21% Similarity=0.349 Sum_probs=222.3
Q ss_pred ceecCCCCC----Cce-eEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCcccc
Q 006220 331 RVHLSSAAL----PSV-SFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405 (656)
Q Consensus 331 ~v~l~~~~~----ps~-~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (656)
.+++|.... |+. +..++..|..-|+.+....+|+.|++++.|.+|++|+.....
T Consensus 48 ~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~--------------------- 106 (735)
T KOG0308|consen 48 IIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN--------------------- 106 (735)
T ss_pred eEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc---------------------
Confidence 556665422 223 344566677789999999999999999999999999987421
Q ss_pred CCCCCceeeEEeecCccCEEEEEE-ccCCCEEEEEeCCCeEEEEeccCCce--eE--------Eee-CCCccEEEEEEec
Q 006220 406 GPNGRKRSYTLYQGHSGPVYSASF-SPLGDFILSSSADTTIRLWSTKLNAN--LV--------CYK-GHNYPVWDVQFNP 473 (656)
Q Consensus 406 ~~~~~~~~~~~l~~h~~~V~~l~~-spd~~~L~s~s~Dg~I~lwd~~~~~~--~~--------~~~-~h~~~V~~l~~sp 473 (656)
......+..|..-|.|+++ .++...++||+-|+.|.+||+.++.. +. ... |+..+|.+++.++
T Consensus 107 -----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~ 181 (735)
T KOG0308|consen 107 -----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ 181 (735)
T ss_pred -----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC
Confidence 1234567789999999999 77888999999999999999997732 21 122 7888999999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEE
Q 006220 474 QGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSL 553 (656)
Q Consensus 474 ~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l 553 (656)
.|..|++|+..+.+++||.++.+.+..+.||...|.++..+++|+.++++|+||+|++||+...+|+.++..|...|.++
T Consensus 182 t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL 261 (735)
T KOG0308|consen 182 TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWAL 261 (735)
T ss_pred cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220 554 AMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 554 ~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
..+|+=..+++|+.||.|..=|+++......+-....+|..+..+.+.+-+-+++.|+.|+-|......
T Consensus 262 ~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~ 330 (735)
T KOG0308|consen 262 QSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDI 330 (735)
T ss_pred eeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcccc
Confidence 999999999999999999999998854333333445677777777655556788899999999876543
No 127
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=4.2e-23 Score=219.42 Aligned_cols=251 Identities=19% Similarity=0.332 Sum_probs=196.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (656)
Q Consensus 351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 430 (656)
....+++..+++-..++++ ....++||.+........ +. .....-+.-.-.+..|.|+
T Consensus 39 k~~~nAIs~nr~~~qiv~A-Grs~lklyai~~~~~~~~---------------~~------~~~k~kqn~~~S~~DVkW~ 96 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVA-GRSLLKLYAINPNDFSEK---------------CN------HRFKTKQNKFYSAADVKWG 96 (839)
T ss_pred ccccceEeecCCcceeEEe-cccceeeEeeCcccCCcc---------------ee------eecccccceeeehhhcccc
Confidence 4457778888888778777 456788888764211100 00 0000001111345567787
Q ss_pred c-CCCEEEEEeCCCeEEEEeccC---CceeEEeeCCCccEEEEEEec-CCCEEEEEECCCcEEEEECCCCceeEEecCCC
Q 006220 431 P-LGDFILSSSADTTIRLWSTKL---NANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMAGHL 505 (656)
Q Consensus 431 p-d~~~L~s~s~Dg~I~lwd~~~---~~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~ 505 (656)
. +.++|++++..|.|.+||+.. ...+..+..|...+.++.|++ ..++|++||.||+|++||++..+....+.+..
T Consensus 97 ~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nS 176 (839)
T KOG0269|consen 97 QLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNS 176 (839)
T ss_pred cchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccc
Confidence 4 356899999999999999986 455677889999999999999 56789999999999999999999999999999
Q ss_pred CCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCC-eeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeE
Q 006220 506 SDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583 (656)
Q Consensus 506 ~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~-~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~ 583 (656)
..|..|+|+| .+++++++...|.+++||+|.. ++...+.+|.++|.|+.|+|++.+|||||.|+.|+|||..+++.-.
T Consensus 177 ESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~ 256 (839)
T KOG0269|consen 177 ESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP 256 (839)
T ss_pred hhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc
Confidence 9999999998 5788999999999999999864 6778899999999999999999999999999999999997655433
Q ss_pred eeeCCC-ccEEEEEEcCCCC-EEEEEE--CCCcEEEEeCCCCCc
Q 006220 584 PLMGHT-SCVWTLAYSCEGS-LLASGS--ADCTVKLWDVTTSTK 623 (656)
Q Consensus 584 ~~~~h~-~~V~~l~~s~~~~-~l~sgs--~Dg~I~iWd~~~~~~ 623 (656)
...-++ .+|..+.|-|..+ .|++++ .|-.|+|||++.+--
T Consensus 257 ~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI 300 (839)
T KOG0269|consen 257 KHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI 300 (839)
T ss_pred eeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccc
Confidence 333333 7899999999755 466655 577899999987543
No 128
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=4.6e-22 Score=208.88 Aligned_cols=312 Identities=16% Similarity=0.231 Sum_probs=229.6
Q ss_pred ccceecCCCCCCc--eeEEEEeeCCCCeEEEEEcCC-----------CCEEEEEeCCCcEEEEEcCCCCcccccc--cCC
Q 006220 329 RNRVHLSSAALPS--VSFYTFINTHNGLNCASISQD-----------GSLVAGGFSDSSLKVWDMAKLGQQAVSS--GLQ 393 (656)
Q Consensus 329 ~~~v~l~~~~~ps--~~~~~~~~~~~~V~~l~fs~d-----------g~~La~g~~dg~I~Iwdl~~~~~~~~~~--~~~ 393 (656)
...+++|+..-++ ..++.++-|...|+.+.--|. ...+.+++.|++|++|++.......+.. ...
T Consensus 345 dhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils 424 (1080)
T KOG1408|consen 345 DHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILS 424 (1080)
T ss_pred CceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccch
Confidence 3467888765443 336677888888888876541 1348899999999999998622111100 000
Q ss_pred C----CCCCCCCcccc---CCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccE
Q 006220 394 G----ENDTTPREDII---GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV 466 (656)
Q Consensus 394 ~----~~~~~~~~~~~---~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V 466 (656)
. .........++ ......+......+....|.+++.||+|++|++|..-|++++|++..-.....+..|...|
T Consensus 425 ~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEi 504 (1080)
T KOG1408|consen 425 ANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEI 504 (1080)
T ss_pred hhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheeccccee
Confidence 0 00000000000 0001111222233455679999999999999999999999999999888888889999999
Q ss_pred EEEEEec---CCCEEEEEECCCcEEEEECCC-CceeEEecCCCCCeeEEEEcCCC--CEEEEEECCCcEEEEeCCCCeeE
Q 006220 467 WDVQFNP---QGHYFASSSHDRTARIWSMDR-IQPLRIMAGHLSDVDCVRWHINC--NYIATGSSDKTVRLWDVSSGECV 540 (656)
Q Consensus 467 ~~l~~sp---~~~~l~sgs~Dg~i~lwd~~~-~~~~~~~~~~~~~V~~v~~~p~~--~~l~tgs~dg~V~iwd~~~~~~~ 540 (656)
.|+.|+. ...+|++++.|+.|++||+.. ..++.++.+|.+.|++|.|.-+| ..+++++.|+.|.+--.+.....
T Consensus 505 lcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g 584 (1080)
T KOG1408|consen 505 LCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSG 584 (1080)
T ss_pred EEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCc
Confidence 9999986 356899999999999999865 45678888999999999999877 67888989988755433333333
Q ss_pred EEEecC-----CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeC---CCccEEEEEEcCCCCEEEEEECCCc
Q 006220 541 RIFIGH-----RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG---HTSCVWTLAYSCEGSLLASGSADCT 612 (656)
Q Consensus 541 ~~~~~h-----~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~---h~~~V~~l~~s~~~~~l~sgs~Dg~ 612 (656)
+.|..| ...+..|+..|..+++++++.|..|+|||+.+|+..+.|++ |.+....+...|.|.||++.+.|.+
T Consensus 585 ~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdkt 664 (1080)
T KOG1408|consen 585 RLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKT 664 (1080)
T ss_pred eeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCc
Confidence 344333 24688999999999999999999999999999999999974 6678889999999999999999999
Q ss_pred EEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEc
Q 006220 613 VKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVL 655 (656)
Q Consensus 613 I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ft 655 (656)
+.++|+-+++.+ +...+|+..|..|.|+
T Consensus 665 l~~~Df~sgEcv---------------A~m~GHsE~VTG~kF~ 692 (1080)
T KOG1408|consen 665 LCFVDFVSGECV---------------AQMTGHSEAVTGVKFL 692 (1080)
T ss_pred eEEEEeccchhh---------------hhhcCcchheeeeeec
Confidence 999999998754 4445566666666665
No 129
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=2.1e-22 Score=192.30 Aligned_cols=209 Identities=28% Similarity=0.495 Sum_probs=176.3
Q ss_pred eecCccCEEEEEEcc-CCCEEEEEeCCCeEEEEeccCCc------------ee---EEeeCCCccEEEEEEec-CCCEEE
Q 006220 417 YQGHSGPVYSASFSP-LGDFILSSSADTTIRLWSTKLNA------------NL---VCYKGHNYPVWDVQFNP-QGHYFA 479 (656)
Q Consensus 417 l~~h~~~V~~l~~sp-d~~~L~s~s~Dg~I~lwd~~~~~------------~~---~~~~~h~~~V~~l~~sp-~~~~l~ 479 (656)
...|.+.|.++...+ .|+++++|+.||.|.+||++... ++ ..-.+|...|.++.|-| |...|.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 446889999999987 57899999999999999997543 11 11236889999999999 667899
Q ss_pred EEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcC---CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEc
Q 006220 480 SSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI---NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMS 556 (656)
Q Consensus 480 sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p---~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~s 556 (656)
+++.|.++++||+.+.+....|. ..+.|.+-+|+| ....+|+|..+-.|++.|+.+|.+..++.||.+.|.++.|+
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred cccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence 99999999999999988877776 446788888887 34578899999999999999999999999999999999999
Q ss_pred CCCCE-EEEEECCCcEEEEeCCCC-eeeEee--------------eCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 557 PDGRY-MASGDEDGTIMMWDLASG-RCVTPL--------------MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 557 p~g~~-L~s~~~dg~I~iwD~~~~-~~~~~~--------------~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
|...+ |++|+.||.|++||++.. .|+..+ ..|.+.|.+++|+.++.++++++.|..+++|+..+
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence 98775 678999999999999754 233222 35778899999999999999999999999999998
Q ss_pred CCceee
Q 006220 621 STKVLK 626 (656)
Q Consensus 621 ~~~~~~ 626 (656)
+.....
T Consensus 278 G~ntl~ 283 (397)
T KOG4283|consen 278 GRNTLR 283 (397)
T ss_pred Cccccc
Confidence 876543
No 130
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=7.3e-22 Score=199.09 Aligned_cols=265 Identities=16% Similarity=0.265 Sum_probs=214.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (656)
Q Consensus 350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 429 (656)
.+++|+|+.|+|...+|.+|+.||.++||.++... ...+..+.--..||.+..|
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~--------------------------N~~lqS~~l~~fPi~~a~f 265 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKV--------------------------NPKLQSIHLEKFPIQKAEF 265 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCcc--------------------------ChhheeeeeccCccceeee
Confidence 45789999999999999999999999999998522 1233344445689999999
Q ss_pred ccCCC-EEEEEeCCCeEEEEeccCCceeE--EeeCCC-ccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCC
Q 006220 430 SPLGD-FILSSSADTTIRLWSTKLNANLV--CYKGHN-YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL 505 (656)
Q Consensus 430 spd~~-~L~s~s~Dg~I~lwd~~~~~~~~--~~~~h~-~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~ 505 (656)
.|+|. .+++++....++.||+.+.+... ...++. ..+.....++++++++..|..|.|.+....++..+..+. -.
T Consensus 266 ~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ie 344 (514)
T KOG2055|consen 266 APNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IE 344 (514)
T ss_pred cCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-ec
Confidence 99999 88999999999999998776533 223332 346778899999999999999999999999998888876 44
Q ss_pred CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCC-CeEEEEEcCCCCEEEEEECCCcEEEEeCCC------
Q 006220 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-MILSLAMSPDGRYMASGDEDGTIMMWDLAS------ 578 (656)
Q Consensus 506 ~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~-~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~------ 578 (656)
+.|..++|+.+++.|++++.+|.|++||+++..+++.|....+ .-++++.|++|.|||+|+..|.|.|||..+
T Consensus 345 G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 345 GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTN 424 (514)
T ss_pred cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCC
Confidence 7899999999999999999999999999999999999985433 346788889999999999999999999754
Q ss_pred CeeeEeeeCCCccEEEEEEcCCCCEEEEEE--CCCcEEEEeCCCCCceeecccccCCccccccccccCCCC---CeEEEE
Q 006220 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGS--ADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKST---PVYSLQ 653 (656)
Q Consensus 579 ~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs--~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~---pv~sv~ 653 (656)
.++++.+..-...|+++.|++++++||.+| .+..+++-.+.+.+.. +-+|+.++ .|.||+
T Consensus 425 PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVF---------------sNfP~~n~~vg~vtc~a 489 (514)
T KOG2055|consen 425 PKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVF---------------SNFPTSNTKVGHVTCMA 489 (514)
T ss_pred CCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeee---------------ccCCCCCCcccceEEEE
Confidence 356666666678899999999999998887 4678888888765433 23444443 367788
Q ss_pred EcC
Q 006220 654 VLR 656 (656)
Q Consensus 654 Ftr 656 (656)
|++
T Consensus 490 FSP 492 (514)
T KOG2055|consen 490 FSP 492 (514)
T ss_pred ecC
Confidence 875
No 131
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.89 E-value=1.5e-21 Score=209.14 Aligned_cols=198 Identities=23% Similarity=0.381 Sum_probs=180.4
Q ss_pred cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEe---eCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 006220 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL 498 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~---~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~ 498 (656)
..+++++.++.|++.+.|+..|+|-+|++.+|-....| ..|..+|.+++...-++.+++++.+|.+++||......+
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~ 528 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK 528 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence 56789999999999999999999999999999888888 579999999999988999999999999999999988877
Q ss_pred EEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (656)
Q Consensus 499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~ 578 (656)
..+. -...+.++.+|.....++++..|-.|+++|+.+.+.+|.|.||...|++++|||||+||++++.|++|++||+.+
T Consensus 529 ~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt 607 (910)
T KOG1539|consen 529 KSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPT 607 (910)
T ss_pred eeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccC
Confidence 7766 335688999999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeEeeeCCCccEEEEEEcCCCCEEEEEECC-CcEEEEeCCCC
Q 006220 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD-CTVKLWDVTTS 621 (656)
Q Consensus 579 ~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~D-g~I~iWd~~~~ 621 (656)
+.++-.+. -..++.++.|||+|.+||+...| .-|++|.-.+.
T Consensus 608 ~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNksl 650 (910)
T KOG1539|consen 608 GTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKSL 650 (910)
T ss_pred cceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEchhH
Confidence 99987764 45678999999999999999998 67999986553
No 132
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2.1e-22 Score=187.93 Aligned_cols=204 Identities=27% Similarity=0.406 Sum_probs=174.0
Q ss_pred eecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCc---eeEEeeCCCccEEEEEEec--CCCEEEEEECCCcEEEEE
Q 006220 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA---NLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIWS 491 (656)
Q Consensus 417 l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~---~~~~~~~h~~~V~~l~~sp--~~~~l~sgs~Dg~i~lwd 491 (656)
-..|...|..+...--|+.|++|+.|++|+|+..+... .+..+.||.+|||.++|-. .|.+||+++.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 34688888888777779999999999999999998654 4678899999999999976 899999999999999999
Q ss_pred CCCCc--eeEEecCCCCCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCC---eeEEEEecCCCCeEEEEEcCC---C--
Q 006220 492 MDRIQ--PLRIMAGHLSDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSG---ECVRIFIGHRSMILSLAMSPD---G-- 559 (656)
Q Consensus 492 ~~~~~--~~~~~~~~~~~V~~v~~~p~--~~~l~tgs~dg~V~iwd~~~~---~~~~~~~~h~~~i~~l~~sp~---g-- 559 (656)
-.+++ .......|...|++|+|.|. |-.|+++++||.|.+.+.+.. ...+....|.-.|++++|.|. |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 88764 33456689999999999885 568899999999999998754 234556789999999999995 4
Q ss_pred ---------CEEEEEECCCcEEEEeCCCCe--eeEeeeCCCccEEEEEEcCCC----CEEEEEECCCcEEEEeCCC
Q 006220 560 ---------RYMASGDEDGTIMMWDLASGR--CVTPLMGHTSCVWTLAYSCEG----SLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 560 ---------~~L~s~~~dg~I~iwD~~~~~--~~~~~~~h~~~V~~l~~s~~~----~~l~sgs~Dg~I~iWd~~~ 620 (656)
+.|++|+.|..|+||+..++. .-.++.+|.+-|+.++|.|.- .+||+++.||+|.||-...
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence 569999999999999998763 334578999999999999953 5899999999999998874
No 133
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=8.6e-22 Score=207.19 Aligned_cols=291 Identities=25% Similarity=0.361 Sum_probs=212.7
Q ss_pred cceecCCCCCCc-eeEEEEeeCCCCeEEEEEcCCCC---EEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCcccc
Q 006220 330 NRVHLSSAALPS-VSFYTFINTHNGLNCASISQDGS---LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405 (656)
Q Consensus 330 ~~v~l~~~~~ps-~~~~~~~~~~~~V~~l~fs~dg~---~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (656)
..+.++.....+ .....+.+|.+-|.+++|..-+. +||+|++|.+||||.+........ ...........+....
T Consensus 169 ~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~-~~~e~~~t~~~~~~~f 247 (764)
T KOG1063|consen 169 FVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDS-NEREDSLTTLSNLPVF 247 (764)
T ss_pred eEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccc-cccccccccccCCcee
Confidence 345555443222 22345678899999999986544 899999999999999874321110 0000000000000000
Q ss_pred CCC----CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCc---------------------------
Q 006220 406 GPN----GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA--------------------------- 454 (656)
Q Consensus 406 ~~~----~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~--------------------------- 454 (656)
... -.......+.||.+.|+++.|+|.+..|+++|.|.++.+|...+..
T Consensus 248 ~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n 327 (764)
T KOG1063|consen 248 MILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPN 327 (764)
T ss_pred eeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCC
Confidence 000 0000113456999999999999999999999999999999643210
Q ss_pred -------------------------eeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCC----------Cc---
Q 006220 455 -------------------------NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR----------IQ--- 496 (656)
Q Consensus 455 -------------------------~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~----------~~--- 496 (656)
....+.||...|.+++|+|.|.++++.|.|.+-|++-.-. ++
T Consensus 328 ~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHG 407 (764)
T KOG1063|consen 328 SNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHG 407 (764)
T ss_pred CCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeeccccccc
Confidence 0112357888999999999999999999999888763210 00
Q ss_pred --------------------------------------------------------------------------------
Q 006220 497 -------------------------------------------------------------------------------- 496 (656)
Q Consensus 497 -------------------------------------------------------------------------------- 496 (656)
T Consensus 408 yDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~ 487 (764)
T KOG1063|consen 408 YDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAV 487 (764)
T ss_pred ccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccce
Confidence
Q ss_pred -----------------------------eeEEecCCCCCeeEEEEcCCCCEEEEEECC-----CcEEEEeCCCCeeEEE
Q 006220 497 -----------------------------PLRIMAGHLSDVDCVRWHINCNYIATGSSD-----KTVRLWDVSSGECVRI 542 (656)
Q Consensus 497 -----------------------------~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d-----g~V~iwd~~~~~~~~~ 542 (656)
.+..+.||...|.|++.+|+++.+|+++.. ..|++|+..+...+..
T Consensus 488 ~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~ 567 (764)
T KOG1063|consen 488 CAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQE 567 (764)
T ss_pred eeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhe
Confidence 012234788889999999999999998754 4699999999998889
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe----eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220 543 FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR----CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618 (656)
Q Consensus 543 ~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~----~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~ 618 (656)
+.+|.-.|+.|+|||||++|++.+.|.++.+|...... .....+.|+.-|++++|+|++.+++|+|.|.+|+||..
T Consensus 568 L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 568 LEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE 647 (764)
T ss_pred ecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEec
Confidence 99999999999999999999999999999999875432 23336789999999999999999999999999999999
Q ss_pred CCC
Q 006220 619 TTS 621 (656)
Q Consensus 619 ~~~ 621 (656)
...
T Consensus 648 ~~~ 650 (764)
T KOG1063|consen 648 PDL 650 (764)
T ss_pred cCc
Confidence 886
No 134
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=4.2e-21 Score=185.23 Aligned_cols=232 Identities=19% Similarity=0.252 Sum_probs=190.4
Q ss_pred EEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (656)
Q Consensus 345 ~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 424 (656)
...+.|..++.+++|.+ ...+++|+.||.|+.+|+... ....+..|..+|
T Consensus 48 ~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~-----------------------------~~~~igth~~~i 97 (323)
T KOG1036|consen 48 KLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG-----------------------------NEDQIGTHDEGI 97 (323)
T ss_pred hhheecCCceeeeeccC-CceEEEeccCceEEEEEecCC-----------------------------cceeeccCCCce
Confidence 34567888999999987 456888999999999999852 234456799999
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec--
Q 006220 425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA-- 502 (656)
Q Consensus 425 ~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~-- 502 (656)
.|+.+++-...+++||.|++|++||.+.......+. ....|.++..+ |+.|++|+.|..+.+||+++........
T Consensus 98 ~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS 174 (323)
T KOG1036|consen 98 RCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRES 174 (323)
T ss_pred EEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccc
Confidence 999999988899999999999999998755544444 34478887775 7899999999999999998765433221
Q ss_pred CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC----eeEEEEecCCC---------CeEEEEEcCCCCEEEEEECCC
Q 006220 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG----ECVRIFIGHRS---------MILSLAMSPDGRYMASGDEDG 569 (656)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~----~~~~~~~~h~~---------~i~~l~~sp~g~~L~s~~~dg 569 (656)
.-.-.+.||++-|++.-.++++-||.|.+=.+... ..-..|+.|.. ||++|+|+|-...|+||+.||
T Consensus 175 ~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG 254 (323)
T KOG1036|consen 175 SLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDG 254 (323)
T ss_pred cceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCc
Confidence 33456899999999999999999999888666554 23345666642 799999999999999999999
Q ss_pred cEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEEC
Q 006220 570 TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA 609 (656)
Q Consensus 570 ~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~ 609 (656)
.|.+||+.+.+.+..+......|.+++|+.+|..||.++.
T Consensus 255 ~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 255 IVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 9999999999999999888888999999999999999874
No 135
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=4.1e-21 Score=184.47 Aligned_cols=250 Identities=19% Similarity=0.248 Sum_probs=200.3
Q ss_pred HhccceecCCCCCC-ceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCcccc
Q 006220 327 DLRNRVHLSSAALP-SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405 (656)
Q Consensus 327 ~~~~~v~l~~~~~p-s~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (656)
.....+++|..... .........|.++|.|++|+.||+.+++|+.|+.+++||+...
T Consensus 47 SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~---------------------- 104 (347)
T KOG0647|consen 47 SWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG---------------------- 104 (347)
T ss_pred ccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC----------------------
Confidence 34567777765331 1112345788999999999999999999999999999999852
Q ss_pred CCCCCceeeEEeecCccCEEEEEEccCCC--EEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC
Q 006220 406 GPNGRKRSYTLYQGHSGPVYSASFSPLGD--FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH 483 (656)
Q Consensus 406 ~~~~~~~~~~~l~~h~~~V~~l~~spd~~--~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~ 483 (656)
.......|.++|.++.|-+... .|++||.|.+|+.||++....+.++.- ...+.++.. ....++++..
T Consensus 105 -------Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv--~~pm~vVata 174 (347)
T KOG0647|consen 105 -------QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADV--LYPMAVVATA 174 (347)
T ss_pred -------CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhc--cCceeEEEec
Confidence 3455677999999999987665 799999999999999998888777653 345665554 3557888899
Q ss_pred CCcEEEEECCCCcee--EEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC--eeEEEEecCCC---------Ce
Q 006220 484 DRTARIWSMDRIQPL--RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG--ECVRIFIGHRS---------MI 550 (656)
Q Consensus 484 Dg~i~lwd~~~~~~~--~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~--~~~~~~~~h~~---------~i 550 (656)
++.|.+|+++++... +.-..-.-.+.||+..++....+.|+-.|.+.+..+..+ +.-..|+.|.. .|
T Consensus 175 ~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaV 254 (347)
T KOG0647|consen 175 ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAV 254 (347)
T ss_pred CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEe
Confidence 999999999765322 112223346889999998888899999999999998876 44455666652 57
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEE
Q 006220 551 LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGS 608 (656)
Q Consensus 551 ~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs 608 (656)
++|+|+|....|+++|.||++.+||-.....++....|..+|++.+|+.+|.++|-+.
T Consensus 255 Nsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 255 NSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred cceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 8899999999999999999999999988888999999999999999999999887664
No 136
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=2.1e-20 Score=180.61 Aligned_cols=237 Identities=17% Similarity=0.282 Sum_probs=190.4
Q ss_pred EEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeE
Q 006220 366 VAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTI 445 (656)
Q Consensus 366 La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I 445 (656)
+++|+....|.=+++.......... ..........+..|.++|++++.+ +.+++|||.|-+|
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s----------------~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI 65 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDS----------------VKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETI 65 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccc----------------cceeeeccccccccccceeEEEec--ceeEeccCCCCcE
Confidence 6778888777777766422000000 000112345577899999999997 8999999999999
Q ss_pred EEEeccCCceeEEeeCCCccEEEEEEecCCC--EEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEE
Q 006220 446 RLWSTKLNANLVCYKGHNYPVWDVQFNPQGH--YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523 (656)
Q Consensus 446 ~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~--~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tg 523 (656)
+|||+.....+..+-.|.+.|+++.|.+.-. .|++|+.||.|.+|+...-..+..+.+|.+.|+.++.||.++.-++.
T Consensus 66 ~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsV 145 (362)
T KOG0294|consen 66 HIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSV 145 (362)
T ss_pred EEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEE
Confidence 9999999999999999999999999998664 89999999999999999999999999999999999999999999999
Q ss_pred ECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCE
Q 006220 524 SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSL 603 (656)
Q Consensus 524 s~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~ 603 (656)
+.|+.+++||+-+|+.-....- ....+.+.|+|.|.+++.++.+ .|-||.+.+......+... ..+.++.|- ++..
T Consensus 146 g~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~ 221 (362)
T KOG0294|consen 146 GGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCATFL-DGSE 221 (362)
T ss_pred cCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeeeec-CCce
Confidence 9999999999998876655442 2334559999999988888765 6999999887766555433 456677775 5678
Q ss_pred EEEEECCCcEEEEeCCCCCce
Q 006220 604 LASGSADCTVKLWDVTTSTKV 624 (656)
Q Consensus 604 l~sgs~Dg~I~iWd~~~~~~~ 624 (656)
|++|+.|+.|++||..+....
T Consensus 222 L~vG~d~~~i~~~D~ds~~~~ 242 (362)
T KOG0294|consen 222 LLVGGDNEWISLKDTDSDTPL 242 (362)
T ss_pred EEEecCCceEEEeccCCCccc
Confidence 999999999999999885543
No 137
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.87 E-value=8e-20 Score=186.00 Aligned_cols=233 Identities=21% Similarity=0.418 Sum_probs=188.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (656)
Q Consensus 352 ~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 431 (656)
.-|.|++|.++|. +++|.++|.|.||+... .+.......|.+.|++++.-.
T Consensus 247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~----------------------------~~~~k~~~aH~ggv~~L~~lr 297 (626)
T KOG2106|consen 247 KFVLCVTFLENGD-VITGDSGGNILIWSKGT----------------------------NRISKQVHAHDGGVFSLCMLR 297 (626)
T ss_pred eEEEEEEEcCCCC-EEeecCCceEEEEeCCC----------------------------ceEEeEeeecCCceEEEEEec
Confidence 4599999999998 67899999999999643 223333448999999999998
Q ss_pred CCCEEEEEeCCCeEEEEeccCCc----------------------------------------eeEEeeCCCccEEEEEE
Q 006220 432 LGDFILSSSADTTIRLWSTKLNA----------------------------------------NLVCYKGHNYPVWDVQF 471 (656)
Q Consensus 432 d~~~L~s~s~Dg~I~lwd~~~~~----------------------------------------~~~~~~~h~~~V~~l~~ 471 (656)
+|.+ +||+.|..|..||-.-.+ -.....+|....|.++.
T Consensus 298 ~Gtl-lSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~ 376 (626)
T KOG2106|consen 298 DGTL-LSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLAT 376 (626)
T ss_pred CccE-eecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEc
Confidence 8875 559999999999832000 01123568888999999
Q ss_pred ecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeE
Q 006220 472 NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMIL 551 (656)
Q Consensus 472 sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~ 551 (656)
+|+...++++++|+.+++|+ ..+++.... -..++.|+.|||.| .+|.|+..|...+.|..+...+..-.. ..+++
T Consensus 377 hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls 451 (626)
T KOG2106|consen 377 HPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLS 451 (626)
T ss_pred CCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceE
Confidence 99999999999999999999 334443322 34678999999999 999999999999999999776665554 88999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCC-CeeeEeeeC-CCccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 552 SLAMSPDGRYMASGDEDGTIMMWDLAS-GRCVTPLMG-HTSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619 (656)
Q Consensus 552 ~l~~sp~g~~L~s~~~dg~I~iwD~~~-~~~~~~~~~-h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~ 619 (656)
++.|+|+|.+||.|+.|+.|+||-+.. |........ |..+|+.+.||+|+++|.+-+.|-.|-.|.-.
T Consensus 452 ~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 452 VVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred EEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccc
Confidence 999999999999999999999998864 444444432 33899999999999999999999999999443
No 138
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=6.5e-21 Score=193.26 Aligned_cols=269 Identities=18% Similarity=0.225 Sum_probs=205.9
Q ss_pred hccceecCCCC-CCceeEEEEeeCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCcccc
Q 006220 328 LRNRVHLSSAA-LPSVSFYTFINTHNGLNCASISQDGSLV-AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDII 405 (656)
Q Consensus 328 ~~~~v~l~~~~-~ps~~~~~~~~~~~~V~~l~fs~dg~~L-a~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (656)
..+.++||+.+ +....+|......-++.+++|+....++ |+.+.|..|++|.-... .
T Consensus 10 ~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~-~-------------------- 68 (673)
T KOG4378|consen 10 TGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK-T-------------------- 68 (673)
T ss_pred cCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCC-C--------------------
Confidence 45667777653 3344455555556679999998876432 33345778999975531 0
Q ss_pred CCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCC
Q 006220 406 GPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR 485 (656)
Q Consensus 406 ~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg 485 (656)
..........+. .-.|++......++++|+..+.|+|||++...+.+.+++|...|+++.++....|||+++..|
T Consensus 69 ---~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gG 143 (673)
T KOG4378|consen 69 ---PEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGG 143 (673)
T ss_pred ---Cccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCC
Confidence 001122222222 223444444458999999999999999997777888899999999999999999999999999
Q ss_pred cEEEEECCCCceeEEecCC-CCCeeEEEEcCCCCEE-EEEECCCcEEEEeCCCCeeEEEE-ecCCCCeEEEEEcCCC-CE
Q 006220 486 TARIWSMDRIQPLRIMAGH-LSDVDCVRWHINCNYI-ATGSSDKTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDG-RY 561 (656)
Q Consensus 486 ~i~lwd~~~~~~~~~~~~~-~~~V~~v~~~p~~~~l-~tgs~dg~V~iwd~~~~~~~~~~-~~h~~~i~~l~~sp~g-~~ 561 (656)
.|.+..+.++.....|... ...|.-+.|||..+.+ .+++.+|.|.+||+....+...+ ..|..|...|+|+|.. .+
T Consensus 144 diiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l 223 (673)
T KOG4378|consen 144 DIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEAL 223 (673)
T ss_pred cEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccce
Confidence 9999999988777777644 3446689999977654 56889999999999877666544 5799999999999954 57
Q ss_pred EEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCc
Q 006220 562 MASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (656)
Q Consensus 562 L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~ 623 (656)
|++.+.|..|.+||+++.+....+. ...+..+++|+++|.+|+.|...|.|..||++..+.
T Consensus 224 ~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 224 LVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred EEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCC
Confidence 8899999999999999777666653 345789999999999999999999999999987553
No 139
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=8e-22 Score=193.31 Aligned_cols=207 Identities=20% Similarity=0.343 Sum_probs=175.1
Q ss_pred eEEeecCccCEEEEEEccCC-CEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEEC
Q 006220 414 YTLYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM 492 (656)
Q Consensus 414 ~~~l~~h~~~V~~l~~spd~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~ 492 (656)
+..+.||...|+|++=+|.. ..+++|+.||.|++||+....++..++.|.+.|.++++.. ..++++|.|.+|+.|.+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 34468999999999999977 6799999999999999999999999999999999999986 67888999998888864
Q ss_pred C--------------------------------------CCceeEEecCCCCCeeEEEEcCCC-CEEEEEECCCcEEEEe
Q 006220 493 D--------------------------------------RIQPLRIMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWD 533 (656)
Q Consensus 493 ~--------------------------------------~~~~~~~~~~~~~~V~~v~~~p~~-~~l~tgs~dg~V~iwd 533 (656)
+ ...|+..+.-....|.++.|+|.. ..|+++++|+.|.+||
T Consensus 137 ~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD 216 (433)
T KOG0268|consen 137 DGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYD 216 (433)
T ss_pred cCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEe
Confidence 3 222444455455668899999965 4566777999999999
Q ss_pred CCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC-eeeEeeeCCCccEEEEEEcCCCCEEEEEECCCc
Q 006220 534 VSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCT 612 (656)
Q Consensus 534 ~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~-~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~ 612 (656)
++++.+++... ....-+.|+|+|.+-.+++|++|..++.||++.. .++....+|.+.|.+++|||.|+-+++||.|.+
T Consensus 217 ~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks 295 (433)
T KOG0268|consen 217 LRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS 295 (433)
T ss_pred cccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccce
Confidence 99999887665 2345678999998888999999999999999864 466777899999999999999999999999999
Q ss_pred EEEEeCCCCCc
Q 006220 613 VKLWDVTTSTK 623 (656)
Q Consensus 613 I~iWd~~~~~~ 623 (656)
|+||.+..+..
T Consensus 296 IRIf~~~~~~S 306 (433)
T KOG0268|consen 296 IRIFPVNHGHS 306 (433)
T ss_pred EEEeecCCCcc
Confidence 99999987653
No 140
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.87 E-value=3.5e-20 Score=179.43 Aligned_cols=252 Identities=22% Similarity=0.373 Sum_probs=191.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc--
Q 006220 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS-- 430 (656)
Q Consensus 353 ~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s-- 430 (656)
-...+.|||||+.|++-+.|..+++|++....-...... +.........-......|+..+|-
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~---------------~~~~~~~~~~r~~eg~tvydy~wYs~ 115 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADG---------------PLNFSKHLSYRYQEGETVYDYCWYSR 115 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCC---------------ccccccceeEEeccCCEEEEEEeeec
Confidence 356789999999999999999999999864211000000 000011111122234678888886
Q ss_pred -----cCCCEEEEEeCCCeEEEEeccCCceeEEeeC--CCc---cEEEEEEecCCCEEEEEECCCcEEEEEC-CCCce--
Q 006220 431 -----PLGDFILSSSADTTIRLWSTKLNANLVCYKG--HNY---PVWDVQFNPQGHYFASSSHDRTARIWSM-DRIQP-- 497 (656)
Q Consensus 431 -----pd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~--h~~---~V~~l~~sp~~~~l~sgs~Dg~i~lwd~-~~~~~-- 497 (656)
|+..++++.+.+.-|++||.-+++....+.+ |.. ...+++|+|||.+|++| ..++|+++|+ +.+..
T Consensus 116 M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~ 194 (406)
T KOG2919|consen 116 MKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCP 194 (406)
T ss_pred cccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCc
Confidence 5677899999999999999999998877765 322 35689999999999876 4689999999 33332
Q ss_pred eEEe-----cCCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCc
Q 006220 498 LRIM-----AGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGT 570 (656)
Q Consensus 498 ~~~~-----~~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~-~dg~ 570 (656)
+... .+..+-+.|++||| +...+++|+....+-||.-..+.++..+.+|.+.|+.++|.++|+.|++|. .|-.
T Consensus 195 vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dk 274 (406)
T KOG2919|consen 195 VYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDK 274 (406)
T ss_pred chhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCe
Confidence 1111 13367789999999 556899999999999999888999999999999999999999999999986 5778
Q ss_pred EEEEeCCC-CeeeEeeeCCCc-cEEE--EEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 571 IMMWDLAS-GRCVTPLMGHTS-CVWT--LAYSCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 571 I~iwD~~~-~~~~~~~~~h~~-~V~~--l~~s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
|..||++. +.++..+..|.+ .-.. +...|++++|++|+.||.|++||+..
T Consensus 275 Il~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 275 ILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred EEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 99999985 456666766654 2233 44578899999999999999999988
No 141
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=9.6e-22 Score=217.98 Aligned_cols=254 Identities=22% Similarity=0.434 Sum_probs=208.8
Q ss_pred eeCCCCeEEEEEcCCCCE----EEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220 348 INTHNGLNCASISQDGSL----VAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (656)
Q Consensus 348 ~~~~~~V~~l~fs~dg~~----La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 423 (656)
+......++++|++.|.. ||.|..||.|.+||..... .+.....+.....|.++
T Consensus 61 ~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~----------------------~~~~~~~la~~~~h~G~ 118 (1049)
T KOG0307|consen 61 LQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII----------------------ANASEEVLATKSKHTGP 118 (1049)
T ss_pred ccccccceeeeecccCCCccceeeccccCCceEEecchhhc----------------------cCcchHHHhhhcccCCc
Confidence 344567889999987766 8999999999999976420 11223345567789999
Q ss_pred EEEEEEccCCC-EEEEEeCCCeEEEEeccCCceeEEee--CCCccEEEEEEecC-CCEEEEEECCCcEEEEECCCCceeE
Q 006220 424 VYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRIQPLR 499 (656)
Q Consensus 424 V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp~-~~~l~sgs~Dg~i~lwd~~~~~~~~ 499 (656)
|..+.|++... +|++|+.||.|.|||+...+.-..+. .....|.+++|+.. .+.|++++.+|++.|||++..+++.
T Consensus 119 V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii 198 (1049)
T KOG0307|consen 119 VLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPII 198 (1049)
T ss_pred eeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccc
Confidence 99999999776 99999999999999998755544442 24567999999984 5678999999999999999999988
Q ss_pred EecCCCC--CeeEEEEcCCC-CEEEEEECC---CcEEEEeCCC-CeeEEEEecCCCCeEEEEEcCCC-CEEEEEECCCcE
Q 006220 500 IMAGHLS--DVDCVRWHINC-NYIATGSSD---KTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDG-RYMASGDEDGTI 571 (656)
Q Consensus 500 ~~~~~~~--~V~~v~~~p~~-~~l~tgs~d---g~V~iwd~~~-~~~~~~~~~h~~~i~~l~~sp~g-~~L~s~~~dg~I 571 (656)
.+..+.+ .+..++|||+. ..|++++.| -.|.+||+|. ...++++.+|...|.++.|++.+ ++|++++.|+.|
T Consensus 199 ~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~i 278 (1049)
T KOG0307|consen 199 KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRI 278 (1049)
T ss_pred ccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCe
Confidence 8876655 46789999976 456666554 3699999985 45778889999999999999966 899999999999
Q ss_pred EEEeCCCCeeeEeeeCCCccEEEEEEcCCCC-EEEEEECCCcEEEEeCCCCCc
Q 006220 572 MMWDLASGRCVTPLMGHTSCVWTLAYSCEGS-LLASGSADCTVKLWDVTTSTK 623 (656)
Q Consensus 572 ~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~-~l~sgs~Dg~I~iWd~~~~~~ 623 (656)
.+|+.++++.+..+......+..+.|+|... .+++++-||.|.|+.+.....
T Consensus 279 i~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~ 331 (1049)
T KOG0307|consen 279 ICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDT 331 (1049)
T ss_pred eEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCCc
Confidence 9999999999999988778899999999654 888999999999999987663
No 142
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.3e-20 Score=181.99 Aligned_cols=204 Identities=25% Similarity=0.391 Sum_probs=162.8
Q ss_pred EeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCcee--EEe--eCCCccEEEEEEecCCCEEEEEE-CCCcEEEE
Q 006220 416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL--VCY--KGHNYPVWDVQFNPQGHYFASSS-HDRTARIW 490 (656)
Q Consensus 416 ~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~--~~~--~~h~~~V~~l~~sp~~~~l~sgs-~Dg~i~lw 490 (656)
.+.+|.+.|++++|+.||+.|++++.|++|++|+++..... ..+ .-.-..-+.+.|.||...+++.. ...++++|
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 47799999999999999999999999999999999865431 111 11122456789999987765554 55689999
Q ss_pred ECCCCc----ee--------EEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCC
Q 006220 491 SMDRIQ----PL--------RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD 558 (656)
Q Consensus 491 d~~~~~----~~--------~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~ 558 (656)
-+...+ +. ..-..|.-.+-.+-...++.+|++++.|..|.+|+++ |+.+..+......-+..+.||+
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~ 239 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD 239 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCC
Confidence 764321 11 1122455566667777789999999999999999998 8888888777777788899999
Q ss_pred CCEEEEEECCCcEEEEeCC---CC-----eeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 559 GRYMASGDEDGTIMMWDLA---SG-----RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 559 g~~L~s~~~dg~I~iwD~~---~~-----~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
|++|++++-.--|++|.+- .| ..+..++||...|..++||+++..+++.+.||+++|||.+-
T Consensus 240 GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 240 GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 9999999998999999863 22 35667889999999999999999999999999999999864
No 143
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=1.1e-20 Score=195.68 Aligned_cols=278 Identities=18% Similarity=0.289 Sum_probs=219.1
Q ss_pred CCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccC--------------------CCCC-
Q 006220 338 ALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGL--------------------QGEN- 396 (656)
Q Consensus 338 ~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~--------------------~~~~- 396 (656)
..|..|.+.+.+|.+.|.|+...|.|.+||+|+.||+|+||.+.++.+....... .+..
T Consensus 387 PFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~ 466 (733)
T KOG0650|consen 387 PFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECV 466 (733)
T ss_pred CCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCce
Confidence 4578888899999999999999999999999999999999999876543221100 0000
Q ss_pred -------C---C----------CC--Cc-----cccCCC---CCceeeEEeecCccCEEEEEEccCCCEEEEEeCC---C
Q 006220 397 -------D---T----------TP--RE-----DIIGPN---GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSAD---T 443 (656)
Q Consensus 397 -------~---~----------~~--~~-----~~~~~~---~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~D---g 443 (656)
. . .. .. ...... .....+.....|..+|..+.|+..|.+|++...+ .
T Consensus 467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~ 546 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK 546 (733)
T ss_pred EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence 0 0 00 00 000000 0111234556789999999999999999987664 4
Q ss_pred eEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEE
Q 006220 444 TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATG 523 (656)
Q Consensus 444 ~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tg 523 (656)
.|.|.++.......-++-..+.|.++.|+|...+|++++. ..|++||+.....+..+......|..++.||+|..|+.|
T Consensus 547 ~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~g 625 (733)
T KOG0650|consen 547 SVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILG 625 (733)
T ss_pred eEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEe
Confidence 6889998877666666556678999999999999998876 789999998877777777777889999999999999999
Q ss_pred ECCCcEEEEeCCCC-eeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC------CC---eeeEeeeCCCcc--
Q 006220 524 SSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA------SG---RCVTPLMGHTSC-- 591 (656)
Q Consensus 524 s~dg~V~iwd~~~~-~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~------~~---~~~~~~~~h~~~-- 591 (656)
+.|+.+..+|+.-+ ++.+.+.-|...+++++|++.-.++++|+.||.+.|+--. .. -+++.+.+|...
T Consensus 626 s~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~ 705 (733)
T KOG0650|consen 626 SYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTND 705 (733)
T ss_pred cCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecc
Confidence 99999999999754 6677888899999999999999999999999999998532 22 355677788754
Q ss_pred --EEEEEEcCCCCEEEEEECCCcEEEE
Q 006220 592 --VWTLAYSCEGSLLASGSADCTVKLW 616 (656)
Q Consensus 592 --V~~l~~s~~~~~l~sgs~Dg~I~iW 616 (656)
|..+.|+|...+|+++|+||+|++|
T Consensus 706 ~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 706 LGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cceEeecccCCCceEEecCCCceEEee
Confidence 8999999999999999999999998
No 144
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=5.7e-20 Score=177.02 Aligned_cols=238 Identities=18% Similarity=0.324 Sum_probs=184.5
Q ss_pred eecCccCEEEEEEccCCCEEEEEeCCCeEEEEecc----CCceeEEeeCCCccEEEEEEec--CCCEEEEEECCCcEEEE
Q 006220 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK----LNANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIW 490 (656)
Q Consensus 417 l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~----~~~~~~~~~~h~~~V~~l~~sp--~~~~l~sgs~Dg~i~lw 490 (656)
-.+|..-|.++.|.+-|+.+++|+.|++|+|||.+ ++.+....+.|.+.|+.+.|-+ .|+.+|+++.|+++.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 34788999999999999999999999999999964 3345667788999999999976 68999999999999999
Q ss_pred ECCC---------CceeEEecCCCCCeeEEEEcC--CCCEEEEEECCCcEEEEeCCCC------eeEEEEe-------cC
Q 006220 491 SMDR---------IQPLRIMAGHLSDVDCVRWHI--NCNYIATGSSDKTVRLWDVSSG------ECVRIFI-------GH 546 (656)
Q Consensus 491 d~~~---------~~~~~~~~~~~~~V~~v~~~p--~~~~l~tgs~dg~V~iwd~~~~------~~~~~~~-------~h 546 (656)
.-.. -....++....+.|+.|.|.| -|-.+|+++.||++|||+.-.. .....+. .+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 7521 112345567778999999998 4678999999999999987543 2222232 46
Q ss_pred CCCeEEEEEcCC---CCEEEEEECC-----CcEEEEeCCCC----eeeEeeeCCCccEEEEEEcCC----CCEEEEEECC
Q 006220 547 RSMILSLAMSPD---GRYMASGDED-----GTIMMWDLASG----RCVTPLMGHTSCVWTLAYSCE----GSLLASGSAD 610 (656)
Q Consensus 547 ~~~i~~l~~sp~---g~~L~s~~~d-----g~I~iwD~~~~----~~~~~~~~h~~~V~~l~~s~~----~~~l~sgs~D 610 (656)
..+..|+.|+|. ..+||.|+.+ +.+.||....+ ..+.++.+|+.+|++++|.|+ -.+||+++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 678899999984 4578888766 57999987543 355677799999999999995 3579999999
Q ss_pred CcEEEEeCCCCCceeecccc-----cCCccccccccccCCCCCeEEEEEc
Q 006220 611 CTVKLWDVTTSTKVLKTEEK-----SGTNRLRSLKTLPTKSTPVYSLQVL 655 (656)
Q Consensus 611 g~I~iWd~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~pv~sv~Ft 655 (656)
| |+||.+.........++. ...-.+..++.+..|+.+|+.|.|.
T Consensus 249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wN 297 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWN 297 (361)
T ss_pred c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEe
Confidence 9 999999863322211111 1123466788899999999999884
No 145
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.3e-20 Score=190.11 Aligned_cols=267 Identities=16% Similarity=0.206 Sum_probs=209.8
Q ss_pred HHHhccceecCCCCCCce-eEEEEeeCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCc
Q 006220 325 LEDLRNRVHLSSAALPSV-SFYTFINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRE 402 (656)
Q Consensus 325 ~~~~~~~v~l~~~~~ps~-~~~~~~~~~~~V~~l~fs~dg~-~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~ 402 (656)
+.++.++++++...-..- ....++-...+|.|++|.|+|. .+++++.....+.||+.+....
T Consensus 230 vaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~---------------- 293 (514)
T KOG2055|consen 230 VAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT---------------- 293 (514)
T ss_pred EecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccc----------------
Confidence 345555555543221111 1222333456899999999999 8899999999999999763221
Q ss_pred cccCCCCCceeeEEeecCc-cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEE
Q 006220 403 DIIGPNGRKRSYTLYQGHS-GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS 481 (656)
Q Consensus 403 ~~~~~~~~~~~~~~l~~h~-~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sg 481 (656)
.+....++. ..+.....||++++|+..+..|.|.+....+++.+..++ -.+.|.+++|+.++..++++
T Consensus 294 ----------k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~ 362 (514)
T KOG2055|consen 294 ----------KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLAS 362 (514)
T ss_pred ----------cccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEE
Confidence 122222332 456678889999999999999999999999999998887 46689999999999999999
Q ss_pred ECCCcEEEEECCCCceeEEecCCCCCe--eEEEEcCCCCEEEEEECCCcEEEEeCCC------CeeEEEEecCCCCeEEE
Q 006220 482 SHDRTARIWSMDRIQPLRIMAGHLSDV--DCVRWHINCNYIATGSSDKTVRLWDVSS------GECVRIFIGHRSMILSL 553 (656)
Q Consensus 482 s~Dg~i~lwd~~~~~~~~~~~~~~~~V--~~v~~~p~~~~l~tgs~dg~V~iwd~~~------~~~~~~~~~h~~~i~~l 553 (656)
+.+|.|.+||++...+++.+... +.| ++++.++++.|||+||..|.|.|||..+ .+++..+..-...|++|
T Consensus 363 ~~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl 441 (514)
T KOG2055|consen 363 GGTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSL 441 (514)
T ss_pred cCCceEEEEecCCcceEEEEeec-CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeee
Confidence 99999999999999999888743 333 5667779999999999999999999753 35566666667789999
Q ss_pred EEcCCCCEEEEEE--CCCcEEEEeCCCCeeeEeeeCCC---ccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 554 AMSPDGRYMASGD--EDGTIMMWDLASGRCVTPLMGHT---SCVWTLAYSCEGSLLASGSADCTVKLWDVT 619 (656)
Q Consensus 554 ~~sp~g~~L~s~~--~dg~I~iwD~~~~~~~~~~~~h~---~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~ 619 (656)
.|+|+++.||.++ .+..+++-.+.+......+.... +.|+|++|||.|.+||.|..+|.|.+|.+.
T Consensus 442 ~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 442 QFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 9999999988776 56789999998887776665332 679999999999999999999999999874
No 146
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=5.3e-20 Score=199.58 Aligned_cols=233 Identities=19% Similarity=0.307 Sum_probs=191.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (656)
Q Consensus 350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 429 (656)
+...|.|++- ++.+|++|+.+++|.+|.+.... .-..+...+-++.+++|
T Consensus 55 ~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~----------------------------~~~iL~Rftlp~r~~~v 104 (933)
T KOG1274|consen 55 SGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE----------------------------EDTILARFTLPIRDLAV 104 (933)
T ss_pred cCceeEEEee--cccceEEeeccceEEEeeCCCCC----------------------------ccceeeeeeccceEEEE
Confidence 5556666664 56699999999999999987521 11233445678999999
Q ss_pred ccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCC-----
Q 006220 430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH----- 504 (656)
Q Consensus 430 spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~----- 504 (656)
+.+|.+++.||.|-.|++-++.+......+++|..+|.++.|+|++.+||+.+.||.+++||+.++.....+.+-
T Consensus 105 ~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~ 184 (933)
T KOG1274|consen 105 SGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNE 184 (933)
T ss_pred ecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999988766655421
Q ss_pred ---CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec--CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 505 ---LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG--HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579 (656)
Q Consensus 505 ---~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~--h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~ 579 (656)
...+..++|||+|..++..+.|+.|.+|+..++.....+.. +...+.+++|+|+|.|||+++.||.|.|||..+.
T Consensus 185 ~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~ 264 (933)
T KOG1274|consen 185 FILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTH 264 (933)
T ss_pred ccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccc
Confidence 34467789999999999999999999999999988776653 3445999999999999999999999999999872
Q ss_pred eeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEE
Q 006220 580 RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLW 616 (656)
Q Consensus 580 ~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iW 616 (656)
.. ......|.+++|.|+.+.+-.-..-|+..+|
T Consensus 265 ~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 265 ER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred hh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 21 2234689999999998876655555554444
No 147
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.86 E-value=8.5e-19 Score=181.02 Aligned_cols=231 Identities=12% Similarity=0.094 Sum_probs=175.2
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEE-EEEeC
Q 006220 363 GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI-LSSSA 441 (656)
Q Consensus 363 g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L-~s~s~ 441 (656)
++++++++.|+.|++||+.+. .....+.+|. .+.+++|+|+++.+ ++++.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~----------------------------~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~ 51 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATL----------------------------EVTRTFPVGQ-RPRGITLSKDGKLLYVCASD 51 (300)
T ss_pred CcEEEEecCCCEEEEEECCCC----------------------------ceEEEEECCC-CCCceEECCCCCEEEEEECC
Confidence 357889999999999998642 1223344443 36789999999876 56778
Q ss_pred CCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEE-ECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEE
Q 006220 442 DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYI 520 (656)
Q Consensus 442 Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sg-s~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l 520 (656)
++.|++||..+++....+..+.. +..++|+|+++.++++ +.++.+++||+.+.+.+..+..+ ..+.+++|+|++.++
T Consensus 52 ~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l 129 (300)
T TIGR03866 52 SDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIV 129 (300)
T ss_pred CCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEE
Confidence 89999999998887776665443 4678999999877655 56899999999988777776532 457889999999999
Q ss_pred EEEECCC-cEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE-ECCCcEEEEeCCCCeeeEeeeCCC-----c--c
Q 006220 521 ATGSSDK-TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG-DEDGTIMMWDLASGRCVTPLMGHT-----S--C 591 (656)
Q Consensus 521 ~tgs~dg-~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~-~~dg~I~iwD~~~~~~~~~~~~h~-----~--~ 591 (656)
++++.++ .+.+||..++........ ...+.+++|+|+|++|+++ ..+|.|.+||+.+++.+..+..+. . .
T Consensus 130 ~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 208 (300)
T TIGR03866 130 VNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQ 208 (300)
T ss_pred EEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCC
Confidence 9988765 577889998887665443 3345789999999988654 468999999999998877665321 1 2
Q ss_pred EEEEEEcCCCCEEEE-EECCCcEEEEeCCCCCcee
Q 006220 592 VWTLAYSCEGSLLAS-GSADCTVKLWDVTTSTKVL 625 (656)
Q Consensus 592 V~~l~~s~~~~~l~s-gs~Dg~I~iWd~~~~~~~~ 625 (656)
...++|+|++++++. .+.++.|.+||+.+.+...
T Consensus 209 ~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~ 243 (300)
T TIGR03866 209 PVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD 243 (300)
T ss_pred ccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence 346889999998554 4557789999998776543
No 148
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.86 E-value=3.7e-20 Score=186.80 Aligned_cols=255 Identities=20% Similarity=0.244 Sum_probs=200.3
Q ss_pred EeeCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220 347 FINTHNGLNCASISQDG--SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (656)
Q Consensus 347 ~~~~~~~V~~l~fs~dg--~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 424 (656)
..-+.+.|+|++|+|.. +++|+|...|.|-+||+.... .....+..+..|+++|
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~------------------------~d~d~v~~f~~hs~~V 237 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE------------------------KDKDGVYLFTPHSGPV 237 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCC------------------------CccCceEEeccCCccc
Confidence 34567889999999974 589999999999999996211 1123456788999999
Q ss_pred EEEEEccCC-CEEEEEeCCCeEEEEeccCCceeEEeeC--CCccEEEEEEecCCCEEEEEECCCcEEEEECCCCce-eEE
Q 006220 425 YSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP-LRI 500 (656)
Q Consensus 425 ~~l~~spd~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~~--h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~-~~~ 500 (656)
.++.|+|.+ ..+++.|.||+|++-|++....-..+.. ....+.++.|+.+...++.+..=|...+||+++... ...
T Consensus 238 s~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~ 317 (498)
T KOG4328|consen 238 SGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYEN 317 (498)
T ss_pred cceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchh
Confidence 999999966 4799999999999999987654333333 455677888998888888898888999999998665 566
Q ss_pred ecCCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCe----eEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220 501 MAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGE----CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575 (656)
Q Consensus 501 ~~~~~~~V~~v~~~p~-~~~l~tgs~dg~V~iwd~~~~~----~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD 575 (656)
+.-|...|+.++++|- ..+|+|++.|++++|||++.-. +.-....|...|.+..|||.|..|++.+.|..|+|||
T Consensus 318 ~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~d 397 (498)
T KOG4328|consen 318 LRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFD 397 (498)
T ss_pred hhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEee
Confidence 6778889999999995 4678999999999999998532 2233456999999999999988899999999999999
Q ss_pred CC----CCeeeEeeeCCCc------cEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceee
Q 006220 576 LA----SGRCVTPLMGHTS------CVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLK 626 (656)
Q Consensus 576 ~~----~~~~~~~~~~h~~------~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~ 626 (656)
.. ...+...+. |.. ......|.|+..++++|-.-..|-|+|-..++.+..
T Consensus 398 ss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~e 457 (498)
T KOG4328|consen 398 SSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCE 457 (498)
T ss_pred cccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeee
Confidence 83 222333332 221 234567999999999999999999999888775544
No 149
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.85 E-value=2.5e-19 Score=182.39 Aligned_cols=311 Identities=21% Similarity=0.264 Sum_probs=219.2
Q ss_pred HHhccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccc--cccc-------CCCCC
Q 006220 326 EDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQA--VSSG-------LQGEN 396 (656)
Q Consensus 326 ~~~~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~--~~~~-------~~~~~ 396 (656)
.+....+.+|+.....+....+ .|.++|.|++.-.+|.+|- |+.|..|..||-.-.+... .... .++..
T Consensus 263 gDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~ 340 (626)
T KOG2106|consen 263 GDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKG 340 (626)
T ss_pred ecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCC
Confidence 3556677888775555544444 8999999999999998777 9999999999932111100 0000 00000
Q ss_pred CC---CCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEec
Q 006220 397 DT---TPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP 473 (656)
Q Consensus 397 ~~---~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp 473 (656)
+. .....++..+-.........+|......++.+|+...+++|+.|+++++|+ ..+.... +....++.|+.|+|
T Consensus 341 di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt-~~~~d~~~~~~fhp 417 (626)
T KOG2106|consen 341 DILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWT-KIIEDPAECADFHP 417 (626)
T ss_pred cEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEE-EEecCceeEeeccC
Confidence 00 001111111222223345678999999999999999999999999999999 2333333 33567899999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC-eeE-EEEecCCCCeE
Q 006220 474 QGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-ECV-RIFIGHRSMIL 551 (656)
Q Consensus 474 ~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~-~~~-~~~~~h~~~i~ 551 (656)
.| .++.|+..|...+.|+++...+..-.. ..++++++|+|+|.+||.|+.|+.|++|-+..+ ... +.-..+.++|+
T Consensus 418 sg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~it 495 (626)
T KOG2106|consen 418 SG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPIT 495 (626)
T ss_pred cc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeE
Confidence 99 999999999999999999766666555 789999999999999999999999999998654 322 22233448999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEe--------------e----eCCCccEEEEEEcCCCCEEEEEECCCcE
Q 006220 552 SLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP--------------L----MGHTSCVWTLAYSCEGSLLASGSADCTV 613 (656)
Q Consensus 552 ~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~--------------~----~~h~~~V~~l~~s~~~~~l~sgs~Dg~I 613 (656)
.+.||+|+++|.+.+.|-.|..|.-...+.+.. + ..|...|..++-+.+.+++++|...|.|
T Consensus 496 hLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v 575 (626)
T KOG2106|consen 496 HLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKV 575 (626)
T ss_pred EeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceE
Confidence 999999999999999999999995432221111 1 1234456666777788899999999999
Q ss_pred EEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEc
Q 006220 614 KLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVL 655 (656)
Q Consensus 614 ~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ft 655 (656)
++|...-...... .-.+-.+++-|.+|+|+
T Consensus 576 ~lf~yPc~s~rA~------------~he~~ghs~~vt~V~Fl 605 (626)
T KOG2106|consen 576 HLFSYPCSSPRAP------------SHEYGGHSSHVTNVAFL 605 (626)
T ss_pred EEEccccCCCccc------------ceeeccccceeEEEEEe
Confidence 9998765443221 11244556666666664
No 150
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.85 E-value=1.5e-19 Score=190.42 Aligned_cols=293 Identities=26% Similarity=0.394 Sum_probs=215.5
Q ss_pred ccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCC---EEEEEeCCCcEEEEEcCCCCccccc----------------
Q 006220 329 RNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGS---LVAGGFSDSSLKVWDMAKLGQQAVS---------------- 389 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~---~La~g~~dg~I~Iwdl~~~~~~~~~---------------- 389 (656)
...+.++++.-+ ...+++.+|...|+|+.|-|+.. ++++|+.||.|.+|.+.........
T Consensus 33 ~~~Iav~dp~k~-~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~ 111 (764)
T KOG1063|consen 33 GPAIAVADPEKI-LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARS 111 (764)
T ss_pred CceEEEeCcccc-eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeee
Confidence 345555554333 45667889999999999999877 8999999999999998732110000
Q ss_pred ----c----------cCCCCCC----C---------------CCCc--------------cccC-CCCCceeeEEeecCc
Q 006220 390 ----S----------GLQGEND----T---------------TPRE--------------DIIG-PNGRKRSYTLYQGHS 421 (656)
Q Consensus 390 ----~----------~~~~~~~----~---------------~~~~--------------~~~~-~~~~~~~~~~l~~h~ 421 (656)
. ..+..+. . ..+. .+.+ ..........+.||.
T Consensus 112 ~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~ 191 (764)
T KOG1063|consen 112 SVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHT 191 (764)
T ss_pred eEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccc
Confidence 0 0000000 0 0000 0000 012234556788999
Q ss_pred cCEEEEEEccCCC---EEEEEeCCCeEEEEeccCCc---------------------eeE----------EeeCCCccEE
Q 006220 422 GPVYSASFSPLGD---FILSSSADTTIRLWSTKLNA---------------------NLV----------CYKGHNYPVW 467 (656)
Q Consensus 422 ~~V~~l~~spd~~---~L~s~s~Dg~I~lwd~~~~~---------------------~~~----------~~~~h~~~V~ 467 (656)
+.|.+++|...+. +|+|+|.|..||||.+.-+. ... .+.||..-|.
T Consensus 192 DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~ 271 (764)
T KOG1063|consen 192 DWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVY 271 (764)
T ss_pred hhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceE
Confidence 9999999987654 78999999999999865332 111 1248999999
Q ss_pred EEEEecCCCEEEEEECCCcEEEEECCCCc---------------------------------------------------
Q 006220 468 DVQFNPQGHYFASSSHDRTARIWSMDRIQ--------------------------------------------------- 496 (656)
Q Consensus 468 ~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~--------------------------------------------------- 496 (656)
++.|+|.+..|+++|.|.++.+|..+...
T Consensus 272 sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w 351 (764)
T KOG1063|consen 272 SVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFW 351 (764)
T ss_pred EEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccce
Confidence 99999999999999999999999754221
Q ss_pred -eeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC-------------------------C----------CeeE
Q 006220 497 -PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-------------------------S----------GECV 540 (656)
Q Consensus 497 -~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~-------------------------~----------~~~~ 540 (656)
+...+.||...|..++|+|.|.+|++.+.|.+-|++-.- + .+.+
T Consensus 352 ~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVl 431 (764)
T KOG1063|consen 352 TQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVL 431 (764)
T ss_pred eeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceee
Confidence 112345899999999999999999999999998886321 0 0111
Q ss_pred EEE-----------------------------------------------------------------------------
Q 006220 541 RIF----------------------------------------------------------------------------- 543 (656)
Q Consensus 541 ~~~----------------------------------------------------------------------------- 543 (656)
|.|
T Consensus 432 RvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~ 511 (764)
T KOG1063|consen 432 RVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQ 511 (764)
T ss_pred eeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHH
Confidence 111
Q ss_pred ----------ecCCCCeEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEE
Q 006220 544 ----------IGHRSMILSLAMSPDGRYMASGDED-----GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGS 608 (656)
Q Consensus 544 ----------~~h~~~i~~l~~sp~g~~L~s~~~d-----g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs 608 (656)
-||...|.+++.+|+|+++|+++.. -.|++|+..+...+..+.+|+-.|+.++|||||++|++.|
T Consensus 512 ~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvs 591 (764)
T KOG1063|consen 512 NTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVS 591 (764)
T ss_pred hccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEee
Confidence 1788899999999999999998754 3599999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCC
Q 006220 609 ADCTVKLWDVTTST 622 (656)
Q Consensus 609 ~Dg~I~iWd~~~~~ 622 (656)
.|.++.+|......
T Consensus 592 RDRt~sl~~~~~~~ 605 (764)
T KOG1063|consen 592 RDRTVSLYEVQEDI 605 (764)
T ss_pred cCceEEeeeeeccc
Confidence 99999999985543
No 151
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=7.3e-21 Score=196.51 Aligned_cols=260 Identities=22% Similarity=0.321 Sum_probs=203.3
Q ss_pred EEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220 345 YTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (656)
Q Consensus 345 ~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 424 (656)
+++..|.+.|+.++|.+-...|++|+.||.|++|+++.... ........+..+.+|.+||
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~--------------------s~~~~~epi~tfraH~gPV 347 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKK--------------------SAEKDVEPILTFRAHEGPV 347 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCC--------------------ccccceeeeEEEecccCce
Confidence 37888999999999999999999999999999999953110 0112345778899999999
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEeccCC----------ceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCC
Q 006220 425 YSASFSPLGDFILSSSADTTIRLWSTKLN----------ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR 494 (656)
Q Consensus 425 ~~l~~spd~~~L~s~s~Dg~I~lwd~~~~----------~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~ 494 (656)
.|++.++.+..+++|+.||+|+.|++... ....++.||...||.+++|+....|++|+.||++++|+...
T Consensus 348 l~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~ 427 (577)
T KOG0642|consen 348 LCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTE 427 (577)
T ss_pred EEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCC
Confidence 99999999999999999999999965411 22356789999999999999999999999999999999887
Q ss_pred CceeEEecCC--CCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCeeEEEEecC-------CCCeEEEEEcCCCCEEEE
Q 006220 495 IQPLRIMAGH--LSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFIGH-------RSMILSLAMSPDGRYMAS 564 (656)
Q Consensus 495 ~~~~~~~~~~--~~~V~~v~~~p~~-~~l~tgs~dg~V~iwd~~~~~~~~~~~~h-------~~~i~~l~~sp~g~~L~s 564 (656)
..+ ..+... .+...++.+-... ...++...-+.-.+++...+..+..+... ...+..+.++|.+.+.++
T Consensus 428 ~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~ 506 (577)
T KOG0642|consen 428 ESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFT 506 (577)
T ss_pred cCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEe
Confidence 766 333321 1233444443222 22233333344445555555555544321 134677889999999999
Q ss_pred EECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220 565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625 (656)
Q Consensus 565 ~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~ 625 (656)
+..|+.|+++|..++..+..+..|...++++++.|+|-+|++|+.||.+++|.+.......
T Consensus 507 ~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 507 AHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred cccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheee
Confidence 9999999999999999999999999999999999999999999999999999997766544
No 152
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=4.1e-20 Score=193.03 Aligned_cols=254 Identities=21% Similarity=0.330 Sum_probs=192.3
Q ss_pred EEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220 344 FYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (656)
Q Consensus 344 ~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 423 (656)
++.+..|.+.|..+.|-|....|++++.|.++++||+..... .-...+.||.+.
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l--------------------------~G~~~~~GH~~S 146 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL--------------------------VGGRLNLGHTGS 146 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee--------------------------ecceeecccccc
Confidence 456788999999999999778899999999999999986221 122357899999
Q ss_pred EEEEEEccCCC-EEEEEeCCCeEEEEeccCCce---------------------------eEEeeCCCccEEE---EEEe
Q 006220 424 VYSASFSPLGD-FILSSSADTTIRLWSTKLNAN---------------------------LVCYKGHNYPVWD---VQFN 472 (656)
Q Consensus 424 V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~---------------------------~~~~~~h~~~V~~---l~~s 472 (656)
|.+++|.|++. .|++|+.||.|.|||++-... +...+.+...|.+ +.+.
T Consensus 147 vkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f 226 (720)
T KOG0321|consen 147 VKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF 226 (720)
T ss_pred cchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE
Confidence 99999999776 678999999999999863320 1111223444555 6666
Q ss_pred cCCCEEEEEEC-CCcEEEEECCCCceeE------E--ecCC---CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC--e
Q 006220 473 PQGHYFASSSH-DRTARIWSMDRIQPLR------I--MAGH---LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG--E 538 (656)
Q Consensus 473 p~~~~l~sgs~-Dg~i~lwd~~~~~~~~------~--~~~~---~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~--~ 538 (656)
.|...||++|. |+.|++||++..+... . +..| .-.+.++.....|.+|++.+.|+.|++|++.+- .
T Consensus 227 kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s 306 (720)
T KOG0321|consen 227 KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS 306 (720)
T ss_pred eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC
Confidence 78899999987 9999999998654322 1 2222 234677888888999999999999999999864 3
Q ss_pred eEEEEecCCCC--eEEEEEcCCCCEEEEEECCCcEEEEeCCCCe-eeEeeeCCCccEEEEEEcCC-CCEEEEEECCCcEE
Q 006220 539 CVRIFIGHRSM--ILSLAMSPDGRYMASGDEDGTIMMWDLASGR-CVTPLMGHTSCVWTLAYSCE-GSLLASGSADCTVK 614 (656)
Q Consensus 539 ~~~~~~~h~~~--i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~-~~~~~~~h~~~V~~l~~s~~-~~~l~sgs~Dg~I~ 614 (656)
++..+.++... -..-..+|++.+|++|+.|...++|.+.+.. ....+.+|.-.|++++|.|. -.-+++++.|..++
T Consensus 307 P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~k 386 (720)
T KOG0321|consen 307 PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVK 386 (720)
T ss_pred chhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceE
Confidence 44445444321 1223468999999999999999999998754 45566799999999999883 33477779999999
Q ss_pred EEeCCCCCc
Q 006220 615 LWDVTTSTK 623 (656)
Q Consensus 615 iWd~~~~~~ 623 (656)
||++..+-.
T Consensus 387 iW~l~~~l~ 395 (720)
T KOG0321|consen 387 IWRLSNGLE 395 (720)
T ss_pred EEeccCchh
Confidence 999966543
No 153
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=1.1e-17 Score=178.44 Aligned_cols=254 Identities=36% Similarity=0.654 Sum_probs=212.0
Q ss_pred EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCc-cCE
Q 006220 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS-GPV 424 (656)
Q Consensus 346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V 424 (656)
....+...+.++.|.+.+..++.++.|+.+.+|+..... .....+.++. ..+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~ 112 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE---------------------------KLIKSLEGLHDSSV 112 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc---------------------------eeEEEEeccCCCce
Confidence 356778899999999999999999999999999987521 1233333433 367
Q ss_pred EEEEE-ccCCC-EEEEEeC-CCeEEEEeccC-CceeEEeeCCCccEEEEEEecCCCEEEEEEC-CCcEEEEECCCCceeE
Q 006220 425 YSASF-SPLGD-FILSSSA-DTTIRLWSTKL-NANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRTARIWSMDRIQPLR 499 (656)
Q Consensus 425 ~~l~~-spd~~-~L~s~s~-Dg~I~lwd~~~-~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~-Dg~i~lwd~~~~~~~~ 499 (656)
..+.+ ++++. .++.++. |+.+.+|+... ......+..|...|.+++|+|++.++++++. |+.+++|+......+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (466)
T COG2319 113 SKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS 192 (466)
T ss_pred eeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEE
Confidence 77777 77777 5555455 99999999998 7778888999999999999999998888886 9999999999988999
Q ss_pred EecCCCCCeeEEEEcCCCC-EEEEEECCCcEEEEeCCCCeeEE-EEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 500 IMAGHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSSGECVR-IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (656)
Q Consensus 500 ~~~~~~~~V~~v~~~p~~~-~l~tgs~dg~V~iwd~~~~~~~~-~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~ 577 (656)
.+.+|...|.+++|+|++. .+++++.|+.|++||...+.... .+.+|.... ...|+|++.++++++.|+.+++||+.
T Consensus 193 ~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~ 271 (466)
T COG2319 193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLR 271 (466)
T ss_pred eeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeec
Confidence 9999999999999999998 55555899999999999888888 688888875 44899999999999999999999998
Q ss_pred CCee-eEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220 578 SGRC-VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 578 ~~~~-~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
.... +..+.+|...|.++.|+|++..+++++.|+.+.+|++.........
T Consensus 272 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 322 (466)
T COG2319 272 SSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL 322 (466)
T ss_pred CCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEe
Confidence 7665 4444688899999999998889998999999999988877654433
No 154
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.84 E-value=1.4e-19 Score=189.10 Aligned_cols=268 Identities=20% Similarity=0.308 Sum_probs=195.5
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeC
Q 006220 362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSA 441 (656)
Q Consensus 362 dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~ 441 (656)
....||.+..||.|.++|....... .....+.....|.+.|..+.|-|....|++++.
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr----------------------~ee~~lk~~~aH~nAifDl~wapge~~lVsasG 120 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFR----------------------LEERQLKKPLAHKNAIFDLKWAPGESLLVSASG 120 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcc----------------------hhhhhhcccccccceeEeeccCCCceeEEEccC
Confidence 3567999999999999998642111 112345667789999999999996678999999
Q ss_pred CCeEEEEeccCCceeEE--eeCCCccEEEEEEec-CCCEEEEEECCCcEEEEECCCCc--------------------e-
Q 006220 442 DTTIRLWSTKLNANLVC--YKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQ--------------------P- 497 (656)
Q Consensus 442 Dg~I~lwd~~~~~~~~~--~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~lwd~~~~~--------------------~- 497 (656)
|.++++||+.+.+++.. +.+|.+.|.+++|.| +...|++|+.||.+.|||++-.. +
T Consensus 121 DsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptps 200 (720)
T KOG0321|consen 121 DSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPS 200 (720)
T ss_pred CceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCC
Confidence 99999999999888766 889999999999999 45679999999999999986321 1
Q ss_pred ------eEEecCCCCCeeE---EEEcCCCCEEEEEEC-CCcEEEEeCCCCeeEE--------EEecC---CCCeEEEEEc
Q 006220 498 ------LRIMAGHLSDVDC---VRWHINCNYIATGSS-DKTVRLWDVSSGECVR--------IFIGH---RSMILSLAMS 556 (656)
Q Consensus 498 ------~~~~~~~~~~V~~---v~~~p~~~~l~tgs~-dg~V~iwd~~~~~~~~--------~~~~h---~~~i~~l~~s 556 (656)
++....+...|.+ +.+..|...||+++. |+.|++||++...... .+..| ...++++...
T Consensus 201 kp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lD 280 (720)
T KOG0321|consen 201 KPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILD 280 (720)
T ss_pred chhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEec
Confidence 1111123333444 444567788888777 9999999998754432 12223 3357788888
Q ss_pred CCCCEEEEEECCCcEEEEeCCCC--eeeEeeeCCCc-cE-EEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccccC
Q 006220 557 PDGRYMASGDEDGTIMMWDLASG--RCVTPLMGHTS-CV-WTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSG 632 (656)
Q Consensus 557 p~g~~L~s~~~dg~I~iwD~~~~--~~~~~~~~h~~-~V-~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~ 632 (656)
..|.+|++.+.|+.|++|++.+. .++..+.++.. .+ ..-..+|++.++++|+.|...++|.+.+........ ...
T Consensus 281 ssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l-~Gh 359 (720)
T KOG0321|consen 281 SSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL-LGH 359 (720)
T ss_pred CCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh-hCc
Confidence 88999988888999999999764 23444444431 11 122358999999999999999999998876533221 133
Q ss_pred CccccccccccCCCCCeEEE
Q 006220 633 TNRLRSLKTLPTKSTPVYSL 652 (656)
Q Consensus 633 ~~~~~~l~~~p~~~~pv~sv 652 (656)
...+..+.+.|...+||..+
T Consensus 360 t~eVt~V~w~pS~~t~v~Tc 379 (720)
T KOG0321|consen 360 TREVTTVRWLPSATTPVATC 379 (720)
T ss_pred ceEEEEEeeccccCCCceee
Confidence 34556777888888888654
No 155
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.84 E-value=8.1e-19 Score=174.90 Aligned_cols=256 Identities=20% Similarity=0.355 Sum_probs=192.8
Q ss_pred CCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEE
Q 006220 350 THNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (656)
Q Consensus 350 ~~~~V~~l~fs~dg~-~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 428 (656)
.+.+|.++.|.+++. .+|+|+.|..|+||.+....... ..........+..|...|+++.
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~-------------------~~~~V~y~s~Ls~H~~aVN~vR 72 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG-------------------GDMKVEYLSSLSRHTRAVNVVR 72 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCC-------------------CceeEEEeecccCCcceeEEEE
Confidence 456899999998866 99999999999999987521110 0012345667889999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEecc--------C--------CceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEEC
Q 006220 429 FSPLGDFILSSSADTTIRLWSTK--------L--------NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM 492 (656)
Q Consensus 429 ~spd~~~L~s~s~Dg~I~lwd~~--------~--------~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~ 492 (656)
|+|+|..|+||+.+|.|.+|-.. + +.......+|...|..++|+|++.++++++-|.++++||+
T Consensus 73 f~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv 152 (434)
T KOG1009|consen 73 FSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDV 152 (434)
T ss_pred EcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEe
Confidence 99999999999999999999765 2 2334566789999999999999999999999999999999
Q ss_pred CCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEE---------------------EEecC--CCC
Q 006220 493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR---------------------IFIGH--RSM 549 (656)
Q Consensus 493 ~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~---------------------~~~~h--~~~ 549 (656)
..++....+.+|...|..++|.|-++|+++-+.|...+.+++...+.+. .|... ..-
T Consensus 153 ~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksF 232 (434)
T KOG1009|consen 153 HAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSF 232 (434)
T ss_pred ccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhh
Confidence 9999999999999999999999999999999888877777664322211 11100 001
Q ss_pred eEEEEEcCCCCEEEEEE---------------------------------------------------------------
Q 006220 550 ILSLAMSPDGRYMASGD--------------------------------------------------------------- 566 (656)
Q Consensus 550 i~~l~~sp~g~~L~s~~--------------------------------------------------------------- 566 (656)
...++|+|+|.+|++..
T Consensus 233 FrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyr 312 (434)
T KOG1009|consen 233 FRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYR 312 (434)
T ss_pred hhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccc
Confidence 22344555554444321
Q ss_pred ------CCCcEEEEeCCCCeeeEeee-CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220 567 ------EDGTIMMWDLASGRCVTPLM-GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624 (656)
Q Consensus 567 ------~dg~I~iwD~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~ 624 (656)
..+.|.|||..+..++.... -|-..|+.++|+++|..|+..+.||.+.+--+...+..
T Consensus 313 lvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 313 LVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred eEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 12345566655555544443 36678999999999999999999999888777665543
No 156
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=1e-19 Score=184.58 Aligned_cols=241 Identities=16% Similarity=0.294 Sum_probs=194.8
Q ss_pred ceecCC--CCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCC
Q 006220 331 RVHLSS--AALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPN 408 (656)
Q Consensus 331 ~v~l~~--~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (656)
.+.+|. ..+|.++........ .-.|++......|+++|+..++|+|||+..
T Consensus 58 ~~~~~~K~g~~~~Vp~~~k~~gd-~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-------------------------- 110 (673)
T KOG4378|consen 58 VMRIKEKDGKTPEVPRVRKLTGD-NAFCVACASQSLYEISGGQSGCVKIWDLRA-------------------------- 110 (673)
T ss_pred eEEEecccCCCCccceeeccccc-hHHHHhhhhcceeeeccCcCceeeehhhHH--------------------------
Confidence 444553 234555544433333 344554444458999999999999999974
Q ss_pred CCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCC-CccEEEEEEecCCC-EEEEEECCCc
Q 006220 409 GRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGH-YFASSSHDRT 486 (656)
Q Consensus 409 ~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~l~~sp~~~-~l~sgs~Dg~ 486 (656)
....+.+.+|...|+++.++....+|++++..|.|.|..+.++.....+... ...|.-+.|+|..+ +|.+++.+|.
T Consensus 111 --kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~ 188 (673)
T KOG4378|consen 111 --KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGA 188 (673)
T ss_pred --HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCe
Confidence 3456778899999999999999999999999999999999998877777654 44566899999665 4677889999
Q ss_pred EEEEECCCCceeEEec-CCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEE
Q 006220 487 ARIWSMDRIQPLRIMA-GHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMAS 564 (656)
Q Consensus 487 i~lwd~~~~~~~~~~~-~~~~~V~~v~~~p~-~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s 564 (656)
|.+||+....++..+. .|..+...|+|+|. ...|++.+.|..|.+||++.......+. ...|.+.++|+++|.+|++
T Consensus 189 VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~a 267 (673)
T KOG4378|consen 189 VTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCA 267 (673)
T ss_pred EEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEe
Confidence 9999999888876554 79999999999994 5677889999999999999877776665 4578999999999999999
Q ss_pred EECCCcEEEEeCCCC-eeeEeeeCCCccEEEEEEcCCC
Q 006220 565 GDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYSCEG 601 (656)
Q Consensus 565 ~~~dg~I~iwD~~~~-~~~~~~~~h~~~V~~l~~s~~~ 601 (656)
|...|.|..||++.. .++..+..|...|++++|-+..
T Consensus 268 G~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 268 GNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 999999999999864 5778888999999999997654
No 157
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=6.9e-19 Score=174.55 Aligned_cols=209 Identities=24% Similarity=0.387 Sum_probs=170.9
Q ss_pred eeEEeecCccCEEEEEEccCCC-EEEEEeCCCeEEEEeccCC-------ceeEEeeCCCccEEEEEEecC-CCEEEEEEC
Q 006220 413 SYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLN-------ANLVCYKGHNYPVWDVQFNPQ-GHYFASSSH 483 (656)
Q Consensus 413 ~~~~l~~h~~~V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~-------~~~~~~~~h~~~V~~l~~sp~-~~~l~sgs~ 483 (656)
.+-...||+++|..++|+|.+. .++|||.|.+|.||.+..+ +.+..+.+|...|-.++|+|. .+.|++++.
T Consensus 73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~ 152 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS 152 (472)
T ss_pred CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccC
Confidence 3445679999999999999654 6889999999999998643 346788999999999999995 567899999
Q ss_pred CCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCC-CeEEEEEcCCCCEE
Q 006220 484 DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-MILSLAMSPDGRYM 562 (656)
Q Consensus 484 Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~-~i~~l~~sp~g~~L 562 (656)
|.+|.+|++.+++.+..+. |..-|.++.|+.+|.+|+|++.|+.|||||.++++.+..-.+|.+ .-..+.|-.+|..+
T Consensus 153 Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~ 231 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF 231 (472)
T ss_pred CceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence 9999999999999888887 999999999999999999999999999999999999998888876 34556788888866
Q ss_pred EEEE---CCCcEEEEeCCCCee---eEeeeCCCccEEEEEEcCCCCEEEEE-ECCCcEEEEeCCCCCc
Q 006220 563 ASGD---EDGTIMMWDLASGRC---VTPLMGHTSCVWTLAYSCEGSLLASG-SADCTVKLWDVTTSTK 623 (656)
Q Consensus 563 ~s~~---~dg~I~iwD~~~~~~---~~~~~~h~~~V~~l~~s~~~~~l~sg-s~Dg~I~iWd~~~~~~ 623 (656)
.+|. ++..+-+||-..... +..+. .++.|.---|.+|.+++..+ -.|+.||.|.+.+...
T Consensus 232 tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 232 TTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred eeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 5553 578899999765432 22332 23455555578888877555 4899999999988764
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=2.6e-19 Score=173.84 Aligned_cols=241 Identities=27% Similarity=0.462 Sum_probs=189.5
Q ss_pred eCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220 349 NTHNGLNCASISQD----GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (656)
Q Consensus 349 ~~~~~V~~l~fs~d----g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 424 (656)
.+......++|+-| ..++|+|+.-|.|+|.|+.. ......+.+|.+.|
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~----------------------------~~~~~~~~ghG~sI 138 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS----------------------------GQCSKNYRGHGGSI 138 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch----------------------------hhhccceeccCccc
Confidence 45667788888754 45899999999999999875 34556688999999
Q ss_pred EEEEEccCC-CEEEEEeCCCeEEEEeccCCceeEEe---eCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc----
Q 006220 425 YSASFSPLG-DFILSSSADTTIRLWSTKLNANLVCY---KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ---- 496 (656)
Q Consensus 425 ~~l~~spd~-~~L~s~s~Dg~I~lwd~~~~~~~~~~---~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~---- 496 (656)
..+.+.|+. +++++||.|.+||+|++++..++..+ .+|...|.++.|+++|.+|++||.|.++++|++...+
T Consensus 139 Neik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~ 218 (385)
T KOG1034|consen 139 NEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNK 218 (385)
T ss_pred hhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhh
Confidence 999999976 58899999999999999999998876 4699999999999999999999999999999987321
Q ss_pred -----------------------eeE-EecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeC-CCCe-------------
Q 006220 497 -----------------------PLR-IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDV-SSGE------------- 538 (656)
Q Consensus 497 -----------------------~~~-~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~-~~~~------------- 538 (656)
+.. +-.-|...|.|+.|- |+++++-|.++.|..|.. +-++
T Consensus 219 lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~T 296 (385)
T KOG1034|consen 219 LELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATT 296 (385)
T ss_pred hhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCcccee
Confidence 000 122477778888885 578999888999999987 2111
Q ss_pred eEEEEecCCCCeEEEE--EcCCCCEEEEEECCCcEEEEeCCCCeee--EeeeCC--CccEEEEEEcCCCCEEEEEECCCc
Q 006220 539 CVRIFIGHRSMILSLA--MSPDGRYMASGDEDGTIMMWDLASGRCV--TPLMGH--TSCVWTLAYSCEGSLLASGSADCT 612 (656)
Q Consensus 539 ~~~~~~~h~~~i~~l~--~sp~g~~L~s~~~dg~I~iwD~~~~~~~--~~~~~h--~~~V~~l~~s~~~~~l~sgs~Dg~ 612 (656)
.+..+.-....|.-|. |.|.+++||.|...|.|.+||++...+. .++..+ ...|...+||.|+.+|+..+.|++
T Consensus 297 i~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~ 376 (385)
T KOG1034|consen 297 ILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGT 376 (385)
T ss_pred eeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCc
Confidence 1233333344455554 5567899999999999999999877653 222222 367999999999999999999999
Q ss_pred EEEEeCC
Q 006220 613 VKLWDVT 619 (656)
Q Consensus 613 I~iWd~~ 619 (656)
|.-||..
T Consensus 377 Vwrwdrv 383 (385)
T KOG1034|consen 377 VWRWDRV 383 (385)
T ss_pred EEEEEee
Confidence 9999864
No 159
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=6.5e-19 Score=177.41 Aligned_cols=200 Identities=23% Similarity=0.378 Sum_probs=163.8
Q ss_pred EEEEEEcc-------CCCEEEEEeCCCeEEEEeccCCcee---------------------EEeeCCCccEEEEEEecC-
Q 006220 424 VYSASFSP-------LGDFILSSSADTTIRLWSTKLNANL---------------------VCYKGHNYPVWDVQFNPQ- 474 (656)
Q Consensus 424 V~~l~~sp-------d~~~L~s~s~Dg~I~lwd~~~~~~~---------------------~~~~~h~~~V~~l~~sp~- 474 (656)
-.|+.|.. .|++++.|+.|..|.|||+.-...+ ....+|+..|..+.|+..
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 35666643 3579999999999999998622110 112368888889999874
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEE
Q 006220 475 GHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSL 553 (656)
Q Consensus 475 ~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l 553 (656)
.+.||+||.|.+|++||+.+++|..++..|...|.++.||| ...+|++|+.|++|.+.|+|...+....-.-.+.|-.+
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv 335 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV 335 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence 56789999999999999999999999999999999999998 56789999999999999999533322222245779999
Q ss_pred EEcCCC-CEEEEEECCCcEEEEeCCCC-eeeEeeeCCCccEEEEEEcCC-CCEEEEEECCCcEEEEeCCCCCc
Q 006220 554 AMSPDG-RYMASGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYSCE-GSLLASGSADCTVKLWDVTTSTK 623 (656)
Q Consensus 554 ~~sp~g-~~L~s~~~dg~I~iwD~~~~-~~~~~~~~h~~~V~~l~~s~~-~~~l~sgs~Dg~I~iWd~~~~~~ 623 (656)
+|.|.. ..+++++.||+|+-+|++.. +++.+++.|.++|.++++++. -.++++++.|+.|++|++.....
T Consensus 336 ~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 336 AWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred EecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence 999965 46778889999999999875 899999999999999999885 45789999999999999976554
No 160
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=7e-20 Score=203.35 Aligned_cols=207 Identities=22% Similarity=0.365 Sum_probs=167.2
Q ss_pred ccCEEEEEEccCCCE----EEEEeCCCeEEEEeccCC------ceeEEeeCCCccEEEEEEecCC-CEEEEEECCCcEEE
Q 006220 421 SGPVYSASFSPLGDF----ILSSSADTTIRLWSTKLN------ANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARI 489 (656)
Q Consensus 421 ~~~V~~l~~spd~~~----L~s~s~Dg~I~lwd~~~~------~~~~~~~~h~~~V~~l~~sp~~-~~l~sgs~Dg~i~l 489 (656)
....+.++|.+.+.. ++.|..||.|.+||...- ..+..+..|.++|..+.|++.. +.+|+|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 356788999987765 888999999999997642 2356677899999999999965 59999999999999
Q ss_pred EECCCCceeEEec--CCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCC--CeEEEEEcCCCC-EEE
Q 006220 490 WSMDRIQPLRIMA--GHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS--MILSLAMSPDGR-YMA 563 (656)
Q Consensus 490 wd~~~~~~~~~~~--~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~--~i~~l~~sp~g~-~L~ 563 (656)
||+.+.+.-.... ...+.|.|++|+. ....|++++.+|.+.|||++..+.+-.+..+.+ .+..++|+|++. .|+
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 9998755443332 2457899999996 456778899999999999999988877766654 478899999863 555
Q ss_pred EEECCC---cEEEEeCCCC-eeeEeeeCCCccEEEEEEcCCC-CEEEEEECCCcEEEEeCCCCCceeec
Q 006220 564 SGDEDG---TIMMWDLASG-RCVTPLMGHTSCVWTLAYSCEG-SLLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 564 s~~~dg---~I~iwD~~~~-~~~~~~~~h~~~V~~l~~s~~~-~~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
+++.|. .|.+||++.. .+++.+.+|...|.++.|++.+ .+|+|++.|+.|.+|+..+++.+...
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~ 292 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGEL 292 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeec
Confidence 555443 6999998754 5677788999999999999965 89999999999999999998765544
No 161
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.81 E-value=8.8e-17 Score=171.59 Aligned_cols=266 Identities=36% Similarity=0.649 Sum_probs=213.8
Q ss_pred ccceecCCCCCCceeEEEEeeCC-CCeEEEEE-cCCCC-EEEEEeC-CCcEEEEEcCCCCcccccccCCCCCCCCCCccc
Q 006220 329 RNRVHLSSAALPSVSFYTFINTH-NGLNCASI-SQDGS-LVAGGFS-DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDI 404 (656)
Q Consensus 329 ~~~v~l~~~~~ps~~~~~~~~~~-~~V~~l~f-s~dg~-~La~g~~-dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 404 (656)
...+.+|....+......+.... ..+..+.+ ++++. +++..+. |+.+.+|+...
T Consensus 86 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---------------------- 143 (466)
T COG2319 86 DGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLST---------------------- 143 (466)
T ss_pred CCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecC----------------------
Confidence 34566666555542333444433 36777777 88887 5555444 99999999863
Q ss_pred cCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeC-CCeEEEEeccCCceeEEeeCCCccEEEEEEecCCC-EEEEEE
Q 006220 405 IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSA-DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSS 482 (656)
Q Consensus 405 ~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~-Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~sgs 482 (656)
.......+..|...|.+++|+|++..+++++. |+.+++|++..+..+..+.+|...|.+++|+|++. .+++++
T Consensus 144 -----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 144 -----PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred -----CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 12355677889999999999999998888886 99999999998888888999999999999999998 566669
Q ss_pred CCCcEEEEECCCCceeE-EecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee-EEEEecCCCCeEEEEEcCCCC
Q 006220 483 HDRTARIWSMDRIQPLR-IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGR 560 (656)
Q Consensus 483 ~Dg~i~lwd~~~~~~~~-~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~-~~~~~~h~~~i~~l~~sp~g~ 560 (656)
.|+.+++||...+.... .+.+|...+ ...|+|++.++++++.|+.+++||++.... +..+.+|...+.++.|+|++.
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 297 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK 297 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCC
Confidence 99999999988777777 688888776 448999999999999999999999987665 555568889999999999888
Q ss_pred EEEEEECCCcEEEEeCCCCeeeEeee--CCCccEEEEEEcCCCCEEEEE-ECCCcEEEEeCCCCC
Q 006220 561 YMASGDEDGTIMMWDLASGRCVTPLM--GHTSCVWTLAYSCEGSLLASG-SADCTVKLWDVTTST 622 (656)
Q Consensus 561 ~L~s~~~dg~I~iwD~~~~~~~~~~~--~h~~~V~~l~~s~~~~~l~sg-s~Dg~I~iWd~~~~~ 622 (656)
.+++++.|+.+.+||..+........ .|...+..+.|.+++..++.+ ..|+.+.+|++....
T Consensus 298 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 88889999999999999888777766 788889999994332455555 688999999998876
No 162
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.81 E-value=1.9e-18 Score=165.04 Aligned_cols=254 Identities=20% Similarity=0.301 Sum_probs=192.4
Q ss_pred EEeeCCCCeEEEEEcC-CCCEEEEEeCC-------CcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEe
Q 006220 346 TFINTHNGLNCASISQ-DGSLVAGGFSD-------SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417 (656)
Q Consensus 346 ~~~~~~~~V~~l~fs~-dg~~La~g~~d-------g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 417 (656)
.|..+.+.|+.++-+| |.++|+++..+ -.+.||.+......... .....+..+
T Consensus 58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~-------------------~tlE~v~~L 118 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNS-------------------STLECVASL 118 (370)
T ss_pred hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcccc-------------------chhhHhhcC
Confidence 5677888999999998 46677777552 24789998752211100 011122222
Q ss_pred e-cCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCce-eEEee-----CCCccEEEEEEec--CCCEEEEEECCCcEE
Q 006220 418 Q-GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN-LVCYK-----GHNYPVWDVQFNP--QGHYFASSSHDRTAR 488 (656)
Q Consensus 418 ~-~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~-~~~~~-----~h~~~V~~l~~sp--~~~~l~sgs~Dg~i~ 488 (656)
. .+-+.|.|+.|.|++..+++-. |..|.+|++..+.. +..+. ++....++-+|+| +|+.+++. .|+++.
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~ 196 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQ 196 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEE
Confidence 2 4567999999999999988876 77899999987766 22222 2556678889999 67777776 579999
Q ss_pred EEECCCCceeEEec-CCCCCeeEEEEcCCCC-EEEEEECCCcEEEEeCCC-CeeEEEEecCCCCeEEEEEcCC-CCEEEE
Q 006220 489 IWSMDRIQPLRIMA-GHLSDVDCVRWHINCN-YIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPD-GRYMAS 564 (656)
Q Consensus 489 lwd~~~~~~~~~~~-~~~~~V~~v~~~p~~~-~l~tgs~dg~V~iwd~~~-~~~~~~~~~h~~~i~~l~~sp~-g~~L~s 564 (656)
.||+++.+....+. .|...|..+.|+|+-+ +|++|+.||.|++||.+. ..++..+.+|...|.++.|+|. .++|++
T Consensus 197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs 276 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILS 276 (370)
T ss_pred EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEe
Confidence 99999887766655 7888899999999876 567899999999999985 5678899999999999999995 568889
Q ss_pred EECCCcEEEEeCCCC-----------------------------eeeEeeeCCCccEEEEEEcC-CCCEEEEEECCCcEE
Q 006220 565 GDEDGTIMMWDLASG-----------------------------RCVTPLMGHTSCVWTLAYSC-EGSLLASGSADCTVK 614 (656)
Q Consensus 565 ~~~dg~I~iwD~~~~-----------------------------~~~~~~~~h~~~V~~l~~s~-~~~~l~sgs~Dg~I~ 614 (656)
|+.|..|.+|-..+- ..+.++..|...|++++||. |.-++|+-+.||.+.
T Consensus 277 ~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRvi 356 (370)
T KOG1007|consen 277 GGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVI 356 (370)
T ss_pred cCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEE
Confidence 999999999965321 13345667999999999987 555788899999998
Q ss_pred EEeCCC
Q 006220 615 LWDVTT 620 (656)
Q Consensus 615 iWd~~~ 620 (656)
|=.+..
T Consensus 357 Is~V~r 362 (370)
T KOG1007|consen 357 ISSVPR 362 (370)
T ss_pred eecCCh
Confidence 876644
No 163
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=8.2e-18 Score=177.34 Aligned_cols=264 Identities=19% Similarity=0.248 Sum_probs=206.6
Q ss_pred HHHhccceecCCCCCCceeEEEEeeC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCcc
Q 006220 325 LEDLRNRVHLSSAALPSVSFYTFINT-HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRED 403 (656)
Q Consensus 325 ~~~~~~~v~l~~~~~ps~~~~~~~~~-~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~ 403 (656)
+......+.+|+....-.+...++++ .+.|.+++|++.++ |.+.+-+|.|.-||+.+.
T Consensus 42 vsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~R-LFS~g~sg~i~EwDl~~l-------------------- 100 (691)
T KOG2048|consen 42 VSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGR-LFSSGLSGSITEWDLHTL-------------------- 100 (691)
T ss_pred eeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCe-EEeecCCceEEEEecccC--------------------
Confidence 33445567788766544444455554 45699999996555 555558999999999863
Q ss_pred ccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeE--EeeCCCccEEEEEEecCCCEEEEE
Q 006220 404 IIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV--CYKGHNYPVWDVQFNPQGHYFASS 481 (656)
Q Consensus 404 ~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~--~~~~h~~~V~~l~~sp~~~~l~sg 481 (656)
..........++|++++.+|.+..++.|+.||.+..++...+.... .+....+.|.+++|+|++..+++|
T Consensus 101 --------k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~G 172 (691)
T KOG2048|consen 101 --------KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGG 172 (691)
T ss_pred --------ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEec
Confidence 2334455567899999999999999999999977777776554432 233356899999999999999999
Q ss_pred ECCCcEEEEECCCCceeEEecC--------CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEE
Q 006220 482 SHDRTARIWSMDRIQPLRIMAG--------HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSL 553 (656)
Q Consensus 482 s~Dg~i~lwd~~~~~~~~~~~~--------~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l 553 (656)
+.||.|++||...+..+..... ...-|.++.|- ....|++|.+-|+|.+||...|..+..+..|.+.|.|+
T Consensus 173 s~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~L 251 (691)
T KOG2048|consen 173 SIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLAL 251 (691)
T ss_pred ccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEE
Confidence 9999999999998887763321 11224555555 44589999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCCee----eEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 554 AMSPDGRYMASGDEDGTIMMWDLASGRC----VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 554 ~~sp~g~~L~s~~~dg~I~iwD~~~~~~----~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
+..+++.+++++|.|+.|..+...+++. ......|...|.+++..++ .+++||.|+++.+-....
T Consensus 252 av~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 252 AVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred EEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 9999999999999999999998766533 2233478888999998876 899999999998877655
No 164
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.81 E-value=5.5e-18 Score=183.96 Aligned_cols=268 Identities=20% Similarity=0.257 Sum_probs=203.9
Q ss_pred ceecCCCCCCceeEEEEeeCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCC
Q 006220 331 RVHLSSAALPSVSFYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409 (656)
Q Consensus 331 ~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (656)
.+.+|+...|..+.+. +.....|+|++|+|. ..+||.|+.+|.|.+||+.......
T Consensus 223 ~~~vW~~~~p~~Pe~~-~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~---------------------- 279 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELV-LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP---------------------- 279 (555)
T ss_pred eEEEEecCCCCCceEE-EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC----------------------
Confidence 5778888878665554 455778999999995 7788999999999999998643211
Q ss_pred CceeeEEeecCccCEEEEEEccCCCE--EEEEeCCCeEEEEeccCCceeE------Eee------CCCccEEEEEEec-C
Q 006220 410 RKRSYTLYQGHSGPVYSASFSPLGDF--ILSSSADTTIRLWSTKLNANLV------CYK------GHNYPVWDVQFNP-Q 474 (656)
Q Consensus 410 ~~~~~~~l~~h~~~V~~l~~spd~~~--L~s~s~Dg~I~lwd~~~~~~~~------~~~------~h~~~V~~l~~sp-~ 474 (656)
..........|..+|+.+.|..+-.- ++++|.||.|..|+++.-.... ... .....++++.|.+ +
T Consensus 280 ~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~ 359 (555)
T KOG1587|consen 280 PSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD 359 (555)
T ss_pred CcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCC
Confidence 01233345579999999999775544 9999999999999877433211 011 1234688999998 5
Q ss_pred CCEEEEEECCCcEEEEECCCC--------ceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC-CCeeEEEEec
Q 006220 475 GHYFASSSHDRTARIWSMDRI--------QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-SGECVRIFIG 545 (656)
Q Consensus 475 ~~~l~sgs~Dg~i~lwd~~~~--------~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~-~~~~~~~~~~ 545 (656)
...|++|+.+|.|.--+-... +....+..|.+.|.++.++|-+..++..+.|.+|+||... ...++..+..
T Consensus 360 p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~ 439 (555)
T KOG1587|consen 360 PNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDS 439 (555)
T ss_pred CceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhh
Confidence 667999999999887443222 2233556788999999999988777666669999999987 6677777777
Q ss_pred CCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCC--eeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 546 HRSMILSLAMSPDG-RYMASGDEDGTIMMWDLASG--RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (656)
Q Consensus 546 h~~~i~~l~~sp~g-~~L~s~~~dg~I~iwD~~~~--~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~ 621 (656)
+...+++++|||.. ..++++..||.|.+||+... .++.+..-+....+.+.|++.|+.|++|+..|++.+|++...
T Consensus 440 ~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 440 SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 88889999999965 47788888999999999643 445555455667778889999999999999999999999654
No 165
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.80 E-value=1e-18 Score=181.66 Aligned_cols=117 Identities=26% Similarity=0.487 Sum_probs=102.1
Q ss_pred eeEEEEcC-CCCEEEEEECCCcEEEEeCCCC-------eeEEEEecCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCCC
Q 006220 508 VDCVRWHI-NCNYIATGSSDKTVRLWDVSSG-------ECVRIFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLAS 578 (656)
Q Consensus 508 V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~-------~~~~~~~~h~~~i~~l~~sp-~g~~L~s~~~dg~I~iwD~~~ 578 (656)
|+.+.|.| +...|++++.||.|++|.+..+ .+...+++|...|+++.|+| -...|++++.|-+|++||+++
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence 44555665 4556999999999999998754 34567889999999999999 456899999999999999999
Q ss_pred CeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624 (656)
Q Consensus 579 ~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~ 624 (656)
++....+.+|++.|.+++|||+|+.+++.+.||+|+||.-++++..
T Consensus 710 ~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 710 AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP 755 (1012)
T ss_pred hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc
Confidence 9999999999999999999999999999999999999998876643
No 166
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.6e-17 Score=155.17 Aligned_cols=241 Identities=18% Similarity=0.241 Sum_probs=182.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccC
Q 006220 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL 432 (656)
Q Consensus 353 ~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 432 (656)
.|.+-+|+|.+++|++|..+|.|-+.++........ .......+...++|.++|+.++|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa------------------~~~gk~~iv~eqahdgpiy~~~f~-- 71 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA------------------EPPGKLKIVPEQAHDGPIYYLAFH-- 71 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc------------------CCCCCcceeeccccCCCeeeeeee--
Confidence 355668899999999999999999999875211110 011123445568999999999998
Q ss_pred CCEEEEEeCCCeEEEEeccCCce------eE--EeeCC-----CccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 006220 433 GDFILSSSADTTIRLWSTKLNAN------LV--CYKGH-----NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR 499 (656)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~------~~--~~~~h-----~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~ 499 (656)
..+|++|+. |.|+-|..+.... +. ...-| -..|+.+...|..+.+++++.|+.++.||+++++..+
T Consensus 72 d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r 150 (325)
T KOG0649|consen 72 DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR 150 (325)
T ss_pred hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE
Confidence 567777764 9999998653322 00 01112 2458899999988888888899999999999999999
Q ss_pred EecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec---------C-CCCeEEEEEcCCCCEEEEEECCC
Q 006220 500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG---------H-RSMILSLAMSPDGRYMASGDEDG 569 (656)
Q Consensus 500 ~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~---------h-~~~i~~l~~sp~g~~L~s~~~dg 569 (656)
.++||...|.++.--.....+++|+.||++|+||.++++++..+.. | ...|-+++.+ ..+|++|+. .
T Consensus 151 ~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGgG-p 227 (325)
T KOG0649|consen 151 EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGGG-P 227 (325)
T ss_pred EEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecCC-C
Confidence 9999999999999855566799999999999999999999987643 2 2246666654 568888764 5
Q ss_pred cEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 570 TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 570 ~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
.+.+|.+++.++...+. -.++|..+.|..+ .+++++..+.|.-|.+..
T Consensus 228 ~lslwhLrsse~t~vfp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred ceeEEeccCCCceEEEe-cccceeEeeeecc--eEEEeccccceeeeeecc
Confidence 79999999988776663 3345777888644 678888888899998754
No 167
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=4.4e-18 Score=164.34 Aligned_cols=195 Identities=17% Similarity=0.309 Sum_probs=161.7
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecC
Q 006220 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG 503 (656)
Q Consensus 424 V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~ 503 (656)
-.|+.|++.|.+|++|+.||.|.|||+.|...-..+.+|..||++++||++|+.|+|+|.|..|.+||+..+.++..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 6899999999999999999999999999999888899999999999999999999999999999999999999998887
Q ss_pred CCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCeeEEEEecC----CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 504 HLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFIGH----RSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (656)
Q Consensus 504 ~~~~V~~v~~~p~~-~~l~tgs~dg~V~iwd~~~~~~~~~~~~h----~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~ 578 (656)
..++|..+.|||.. +..++.-.+..-.+-++..+...-.-... .....+..|.+.|+++++|...|.+.++|..+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 56899999999954 33333334444555555442221111111 11223446889999999999999999999999
Q ss_pred CeeeEeeeCCC-ccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 579 GRCVTPLMGHT-SCVWTLAYSCEGSLLASGSADCTVKLWDVT 619 (656)
Q Consensus 579 ~~~~~~~~~h~-~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~ 619 (656)
.+++..++-.+ ..|.++.++..|+.|+.-+.|..||.|++.
T Consensus 185 ~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 185 LECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred heeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 99999888666 789999999999999999999999999987
No 168
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.80 E-value=6.6e-18 Score=161.38 Aligned_cols=241 Identities=22% Similarity=0.363 Sum_probs=181.0
Q ss_pred eeEEeecCccCEEEEEEccCCC-EEEEEeCC-------CeEEEEeccCC---------ceeEEee-CCCccEEEEEEecC
Q 006220 413 SYTLYQGHSGPVYSASFSPLGD-FILSSSAD-------TTIRLWSTKLN---------ANLVCYK-GHNYPVWDVQFNPQ 474 (656)
Q Consensus 413 ~~~~l~~h~~~V~~l~~spd~~-~L~s~s~D-------g~I~lwd~~~~---------~~~~~~~-~h~~~V~~l~~sp~ 474 (656)
....+..|.+.|..++-+|-.+ .|+++..+ ..+.||.+... +++..+. .+-+.|.|+.|.|+
T Consensus 55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn 134 (370)
T KOG1007|consen 55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN 134 (370)
T ss_pred hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence 3455677899999999999665 55555442 24789987532 2333333 34568999999999
Q ss_pred CCEEEEEECCCcEEEEECCCCce-eEEec-----CCCCCeeEEEEcC--CCCEEEEEECCCcEEEEeCCCCeeEEEE-ec
Q 006220 475 GHYFASSSHDRTARIWSMDRIQP-LRIMA-----GHLSDVDCVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIF-IG 545 (656)
Q Consensus 475 ~~~l~sgs~Dg~i~lwd~~~~~~-~~~~~-----~~~~~V~~v~~~p--~~~~l~tgs~dg~V~iwd~~~~~~~~~~-~~ 545 (656)
+..+++-. |..|.+|+++.... +..+. ++....++-+|+| +|+.+++. .|++++.||+++..+...+ ..
T Consensus 135 s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dA 212 (370)
T KOG1007|consen 135 SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDA 212 (370)
T ss_pred CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhh
Confidence 99888876 88999999987665 32222 3455678889988 77777776 5899999999988766544 46
Q ss_pred CCCCeEEEEEcCCCC-EEEEEECCCcEEEEeCCCC-eeeEeeeCCCccEEEEEEcCC-CCEEEEEECCCcEEEEeCCCCC
Q 006220 546 HRSMILSLAMSPDGR-YMASGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYSCE-GSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 546 h~~~i~~l~~sp~g~-~L~s~~~dg~I~iwD~~~~-~~~~~~~~h~~~V~~l~~s~~-~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
|...|..+.|+|+-+ +|++|+.||.|+|||++.- .++..+.+|...|+++.|+|. .+++.+||.|..|.+|-..+..
T Consensus 213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svS 292 (370)
T KOG1007|consen 213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVS 292 (370)
T ss_pred hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccc
Confidence 888899999999865 6889999999999999864 578889999999999999994 6789999999999999876544
Q ss_pred ceeecc--------------cccCCccccccccccCCCCCeEEEEEc
Q 006220 623 KVLKTE--------------EKSGTNRLRSLKTLPTKSTPVYSLQVL 655 (656)
Q Consensus 623 ~~~~~~--------------~~~~~~~~~~l~~~p~~~~pv~sv~Ft 655 (656)
.....+ ++..+-.--++.++..+...||+++++
T Consensus 293 SE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWS 339 (370)
T KOG1007|consen 293 SEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWS 339 (370)
T ss_pred cccccccccccccCcchhhHHhcccccccccccccccccceEEEeec
Confidence 222211 111112223567888899999999986
No 169
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.79 E-value=3e-17 Score=171.76 Aligned_cols=239 Identities=19% Similarity=0.341 Sum_probs=188.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccC
Q 006220 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL 432 (656)
Q Consensus 353 ~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 432 (656)
.|..++|-|||+.|+.+ .+..+.|||.+. +.....+.+|...|+|++|+.|
T Consensus 14 ci~d~afkPDGsqL~lA-Ag~rlliyD~nd----------------------------G~llqtLKgHKDtVycVAys~d 64 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILA-AGSRLLVYDTSD----------------------------GTLLQPLKGHKDTVYCVAYAKD 64 (1081)
T ss_pred chheeEECCCCceEEEe-cCCEEEEEeCCC----------------------------cccccccccccceEEEEEEccC
Confidence 68999999999998887 567899999875 3456778999999999999999
Q ss_pred CCEEEEEeCCCeEEEEeccCCc--------eeEEee---------------------------C--CCccEEEEEEecCC
Q 006220 433 GDFILSSSADTTIRLWSTKLNA--------NLVCYK---------------------------G--HNYPVWDVQFNPQG 475 (656)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~--------~~~~~~---------------------------~--h~~~V~~l~~sp~~ 475 (656)
|+.++||+.|..|.+|+-.-.. .+.++. . ....|.+.+|..||
T Consensus 65 GkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDG 144 (1081)
T KOG1538|consen 65 GKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDG 144 (1081)
T ss_pred CceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCC
Confidence 9999999999999999854211 111110 0 12357778899999
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEec--CCCCCeeEEEEcCCC-----CEEEEEECCCcEEEEeCCCCeeEEEEecCCC
Q 006220 476 HYFASSSHDRTARIWSMDRIQPLRIMA--GHLSDVDCVRWHINC-----NYIATGSSDKTVRLWDVSSGECVRIFIGHRS 548 (656)
Q Consensus 476 ~~l~sgs~Dg~i~lwd~~~~~~~~~~~--~~~~~V~~v~~~p~~-----~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~ 548 (656)
.+|+.|-.+|+|.+-+-.....+++-+ |..++|.+++|+|+. ..+++.....++.+|.+. |+.+..-..-.-
T Consensus 145 qylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~F 223 (1081)
T KOG1538|consen 145 QYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNF 223 (1081)
T ss_pred cEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCC
Confidence 999999999999998755444444433 567899999999965 467777777788888764 444432222333
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220 549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 549 ~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
...|+.+.++|.++..|+.|+.+.+|- +.|-.+.++-.....||+++..|++++++.|+.||+|-.|++...+
T Consensus 224 dP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fST 296 (1081)
T KOG1538|consen 224 DPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFST 296 (1081)
T ss_pred CchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhH
Confidence 457899999999999999999999996 6788888877777899999999999999999999999999986544
No 170
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.79 E-value=1.9e-18 Score=174.52 Aligned_cols=207 Identities=18% Similarity=0.271 Sum_probs=169.4
Q ss_pred eeEEeecCccCEEEEEEccCCC--EEEEEeCCCeEEEEeccCC----ceeEEeeCCCccEEEEEEec-CCCEEEEEECCC
Q 006220 413 SYTLYQGHSGPVYSASFSPLGD--FILSSSADTTIRLWSTKLN----ANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDR 485 (656)
Q Consensus 413 ~~~~l~~h~~~V~~l~~spd~~--~L~s~s~Dg~I~lwd~~~~----~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg 485 (656)
......-|.++|++++|+|... .+++|+.-|+|-+||+.+. ..+..+..|..+|.++.|+| +...+++.|.||
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 3445667899999999999764 7889999999999999633 33566778999999999999 567899999999
Q ss_pred cEEEEECCCCceeEEecC--CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee-EEEEecCCCCeEEEEEcCCC-CE
Q 006220 486 TARIWSMDRIQPLRIMAG--HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDG-RY 561 (656)
Q Consensus 486 ~i~lwd~~~~~~~~~~~~--~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~-~~~~~~h~~~i~~l~~sp~g-~~ 561 (656)
+|++-|+++...-..+.. ....+..+.|+.....+++|..=|...+||.+++.. ...+.-|...|..|+++|.. .+
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~ 337 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF 337 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence 999999987644333332 445567788888888888888878999999998765 56667788899999999965 57
Q ss_pred EEEEECCCcEEEEeCCCCee----eEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 562 MASGDEDGTIMMWDLASGRC----VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619 (656)
Q Consensus 562 L~s~~~dg~I~iwD~~~~~~----~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~ 619 (656)
|++++.|++.+|||++.-.. +-....|...|.+..|||.+..|++.+.|+.|+|||..
T Consensus 338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 89999999999999976432 23334799999999999988889999999999999984
No 171
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.79 E-value=2.1e-18 Score=162.94 Aligned_cols=249 Identities=16% Similarity=0.257 Sum_probs=182.1
Q ss_pred CceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEee-
Q 006220 340 PSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ- 418 (656)
Q Consensus 340 ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~- 418 (656)
|.-++|.+-+|.+.|+|+.|-.+++ |.+|..-|.|++|++++.... ..+.
T Consensus 3 pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~----------------------------~~~r~ 53 (323)
T KOG0322|consen 3 PPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDL----------------------------PLIRL 53 (323)
T ss_pred CCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccc----------------------------hhhhh
Confidence 4455777889999999999988776 888999999999999863321 1122
Q ss_pred cCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCcee------------------------------------------
Q 006220 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL------------------------------------------ 456 (656)
Q Consensus 419 ~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~------------------------------------------ 456 (656)
.|...|+.+.--|+ ..|.+-+.|+.+.+|++..+..+
T Consensus 54 ~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D 132 (323)
T KOG0322|consen 54 FGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQD 132 (323)
T ss_pred hccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhc
Confidence 34556666666654 44566666666777765431110
Q ss_pred -------EEe----eCCCccEEEEEEec-CCC--EEEEEECCCcEEEEECCCCc----------eeEEecCCCCCeeEEE
Q 006220 457 -------VCY----KGHNYPVWDVQFNP-QGH--YFASSSHDRTARIWSMDRIQ----------PLRIMAGHLSDVDCVR 512 (656)
Q Consensus 457 -------~~~----~~h~~~V~~l~~sp-~~~--~l~sgs~Dg~i~lwd~~~~~----------~~~~~~~~~~~V~~v~ 512 (656)
... .+..+.+.|..|.- .+. .++.|-.+|.+.+||+.++. .......|..+|.++.
T Consensus 133 ~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsld 212 (323)
T KOG0322|consen 133 GGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLD 212 (323)
T ss_pred cCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeee
Confidence 000 01123344444322 233 34566689999999998863 3334457899999999
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCCC--ee-EE-EEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCC
Q 006220 513 WHINCNYIATGSSDKTVRLWDVSSG--EC-VR-IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGH 588 (656)
Q Consensus 513 ~~p~~~~l~tgs~dg~V~iwd~~~~--~~-~~-~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h 588 (656)
|.+....=++|+.+..+.+|++... .+ ++ ...-....|..+.+-||++.+|+++.||+|+||..++.+++..++-|
T Consensus 213 yas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH 292 (323)
T KOG0322|consen 213 YASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH 292 (323)
T ss_pred echhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh
Confidence 9987766778888889999988643 22 11 22223345888999999999999999999999999999999999999
Q ss_pred CccEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220 589 TSCVWTLAYSCEGSLLASGSADCTVKLWDV 618 (656)
Q Consensus 589 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~ 618 (656)
.+.|.+++|+|+..++|+++.|+.|.+|++
T Consensus 293 sagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 293 SAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999986
No 172
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.78 E-value=6.2e-17 Score=154.98 Aligned_cols=284 Identities=18% Similarity=0.245 Sum_probs=201.6
Q ss_pred CCceeEEEEeeCCCCeEEEEEc--CC-CCEEEEEeC----CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCc
Q 006220 339 LPSVSFYTFINTHNGLNCASIS--QD-GSLVAGGFS----DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRK 411 (656)
Q Consensus 339 ~ps~~~~~~~~~~~~V~~l~fs--~d-g~~La~g~~----dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (656)
.+..+.++-.+.+-.+.++.|| ++ +-+||.|+- ...|.|-.+..... .
T Consensus 32 ~~r~~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~-------------------------e 86 (364)
T KOG0290|consen 32 NPRRKEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSG-------------------------E 86 (364)
T ss_pred CcccceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCC-------------------------c
Confidence 3444444556667789999998 33 456888863 45677776653111 0
Q ss_pred eeeEEeecCccCEEEEEEccCCC-----EEEEEeCCCeEEEEeccCCceeE---------EeeCCCccEEEEEEec-CCC
Q 006220 412 RSYTLYQGHSGPVYSASFSPLGD-----FILSSSADTTIRLWSTKLNANLV---------CYKGHNYPVWDVQFNP-QGH 476 (656)
Q Consensus 412 ~~~~~l~~h~~~V~~l~~spd~~-----~L~s~s~Dg~I~lwd~~~~~~~~---------~~~~h~~~V~~l~~sp-~~~ 476 (656)
........|.-|++.+.|.|+.. +|++++ | .+|+|.+....... .-..+..|++++.|+. +.+
T Consensus 87 ~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~ 164 (364)
T KOG0290|consen 87 LVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN 164 (364)
T ss_pred eeccCCCCCCCCccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc
Confidence 11111256899999999999873 455543 3 69999987422211 1123677999999998 778
Q ss_pred EEEEEECCCcEEEEECCCCce---eEEecCCCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCeeEEEEec---CCCC
Q 006220 477 YFASSSHDRTARIWSMDRIQP---LRIMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFIG---HRSM 549 (656)
Q Consensus 477 ~l~sgs~Dg~i~lwd~~~~~~---~~~~~~~~~~V~~v~~~p~~-~~l~tgs~dg~V~iwd~~~~~~~~~~~~---h~~~ 549 (656)
++.++|-|-+..|||++++.. ...+-.|...|..++|...+ +.+|+.+.||.||+||++.-+.-..+-. ...+
T Consensus 165 ~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~p 244 (364)
T KOG0290|consen 165 LIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTP 244 (364)
T ss_pred eeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCc
Confidence 999999999999999998643 34556899999999999754 5788999999999999997654433322 2457
Q ss_pred eEEEEEcCC-CCEEEEEE-CCCcEEEEeCCC-CeeeEeeeCCCccEEEEEEcCC-CCEEEEEECCCcEEEEeCCCCCcee
Q 006220 550 ILSLAMSPD-GRYMASGD-EDGTIMMWDLAS-GRCVTPLMGHTSCVWTLAYSCE-GSLLASGSADCTVKLWDVTTSTKVL 625 (656)
Q Consensus 550 i~~l~~sp~-g~~L~s~~-~dg~I~iwD~~~-~~~~~~~~~h~~~V~~l~~s~~-~~~l~sgs~Dg~I~iWd~~~~~~~~ 625 (656)
...++|++. -+++|+-. ....|.|.|++. +.++.++++|.+.|++++|.|. +..|+|+|.|..+-|||+.......
T Consensus 245 LlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~ 324 (364)
T KOG0290|consen 245 LLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPREN 324 (364)
T ss_pred ceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccC
Confidence 888999884 56788754 445799999985 5788999999999999999995 5689999999999999998765411
Q ss_pred eccc---ccCCccccccccccCCCCCe
Q 006220 626 KTEE---KSGTNRLRSLKTLPTKSTPV 649 (656)
Q Consensus 626 ~~~~---~~~~~~~~~l~~~p~~~~pv 649 (656)
...+ -.....+.++.+.+.++.-|
T Consensus 325 ~~dPilay~a~~EVNqi~Ws~~~~Dwi 351 (364)
T KOG0290|consen 325 GEDPILAYTAGGEVNQIQWSSSQPDWI 351 (364)
T ss_pred CCCchhhhhccceeeeeeecccCCCEE
Confidence 1111 02234455666666655444
No 173
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.7e-18 Score=167.85 Aligned_cols=228 Identities=23% Similarity=0.384 Sum_probs=174.1
Q ss_pred CEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccC--CCEEEEEeC
Q 006220 364 SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL--GDFILSSSA 441 (656)
Q Consensus 364 ~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd--~~~L~s~s~ 441 (656)
+.+|++.+.|.|++||..+ ...+..+.+|...+..+.|..+ ...+.+|+.
T Consensus 41 ~~vav~lSngsv~lyd~~t----------------------------g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ss 92 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT----------------------------GQLLEEFKGPPATTNGVRFISCDSPHGVISCSS 92 (376)
T ss_pred eeEEEEecCCeEEEEeccc----------------------------hhhhheecCCCCcccceEEecCCCCCeeEEecc
Confidence 6799999999999999875 3455667788888899999773 457899999
Q ss_pred CCeEEEEeccCCceeEE--eeCCC-ccEEEEEEecCCCEEEEEE----CCCcEEEEECCCCce-eEEe-cCCCCCeeEEE
Q 006220 442 DTTIRLWSTKLNANLVC--YKGHN-YPVWDVQFNPQGHYFASSS----HDRTARIWSMDRIQP-LRIM-AGHLSDVDCVR 512 (656)
Q Consensus 442 Dg~I~lwd~~~~~~~~~--~~~h~-~~V~~l~~sp~~~~l~sgs----~Dg~i~lwd~~~~~~-~~~~-~~~~~~V~~v~ 512 (656)
||+|++||+++...... +..+. .+..+++.+..++.+++|+ .+-.+.+||++..+. ++.+ ..|..+|+++.
T Consensus 93 DG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lr 172 (376)
T KOG1188|consen 93 DGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLR 172 (376)
T ss_pred CCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEE
Confidence 99999999998766543 34444 4667777777888888886 467899999998766 5554 47999999999
Q ss_pred EcC-CCCEEEEEECCCcEEEEeCCCCe---eEEEEecCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCCeeeE----
Q 006220 513 WHI-NCNYIATGSSDKTVRLWDVSSGE---CVRIFIGHRSMILSLAMSPDG-RYMASGDEDGTIMMWDLASGRCVT---- 583 (656)
Q Consensus 513 ~~p-~~~~l~tgs~dg~V~iwd~~~~~---~~~~~~~h~~~i~~l~~sp~g-~~L~s~~~dg~I~iwD~~~~~~~~---- 583 (656)
||| +.+.|++||.||.|.+||+.... .+.....|.+.|.++.|..++ +.|.+-+-.+...+|++..+.+..
T Consensus 173 FHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~ 252 (376)
T KOG1188|consen 173 FHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLEN 252 (376)
T ss_pred ecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccC
Confidence 999 56899999999999999997542 122233466779999998776 357777777888888875432111
Q ss_pred ---------------------------------------------------------eeeC-CCccEEEEEEcCCCCEEE
Q 006220 584 ---------------------------------------------------------PLMG-HTSCVWTLAYSCEGSLLA 605 (656)
Q Consensus 584 ---------------------------------------------------------~~~~-h~~~V~~l~~s~~~~~l~ 605 (656)
.+.+ |..-|.++.|...+.++.
T Consensus 253 ~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~ 332 (376)
T KOG1188|consen 253 PDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLY 332 (376)
T ss_pred ccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceee
Confidence 1122 334566677777788999
Q ss_pred EEECCCcEEEEeCC
Q 006220 606 SGSADCTVKLWDVT 619 (656)
Q Consensus 606 sgs~Dg~I~iWd~~ 619 (656)
|||.||.+.+|...
T Consensus 333 TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 333 TGGEDGLLQAWKVE 346 (376)
T ss_pred ccCCCceEEEEecC
Confidence 99999999999963
No 174
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.78 E-value=3.9e-19 Score=190.19 Aligned_cols=247 Identities=24% Similarity=0.450 Sum_probs=197.0
Q ss_pred EeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (656)
Q Consensus 347 ~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 426 (656)
+.+|.+.|.|+.|...|.++++|+.|..|+||++.+ ........||++.|+.
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et----------------------------~~~lAs~rGhs~ditd 237 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMET----------------------------ARCLASCRGHSGDITD 237 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccc----------------------------hhhhccCCCCccccch
Confidence 467889999999999999999999999999999775 2345567899999999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECC-CC-----cee--
Q 006220 427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD-RI-----QPL-- 498 (656)
Q Consensus 427 l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~-~~-----~~~-- 498 (656)
++.+..+.+++++|.|..|++|.+.++..+..+.+|++.|++++|+|-. +.+.||++++||.+ .. .+.
T Consensus 238 lavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~ 313 (1113)
T KOG0644|consen 238 LAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKF 313 (1113)
T ss_pred hccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCc
Confidence 9999988899999999999999999999999999999999999999954 77899999999987 10 000
Q ss_pred ------EE----------ecC------CCCCeeEEEEcCCCCEEEEEE-----------CCCcEEEEeCCCCeeEEEEec
Q 006220 499 ------RI----------MAG------HLSDVDCVRWHINCNYIATGS-----------SDKTVRLWDVSSGECVRIFIG 545 (656)
Q Consensus 499 ------~~----------~~~------~~~~V~~v~~~p~~~~l~tgs-----------~dg~V~iwd~~~~~~~~~~~~ 545 (656)
.. ..+ ..-.+.+++|+.+.-.+++++ .+..+.+|++.+|...+...+
T Consensus 314 ~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g 393 (1113)
T KOG0644|consen 314 TEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMG 393 (1113)
T ss_pred ccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcc
Confidence 00 000 001123344444443344433 345577899999999999999
Q ss_pred CCCCeEEEEEcCC-CCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220 546 HRSMILSLAMSPD-GRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624 (656)
Q Consensus 546 h~~~i~~l~~sp~-g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~ 624 (656)
|...+..+.++|- .+...+++.||...|||+-.|.+++.+....+.+...+||++|+.++....-|.+.|.....++..
T Consensus 394 hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 394 HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCccc
Confidence 9999999999994 456668999999999999999888776543456778899999999999888899999988766554
Q ss_pred e
Q 006220 625 L 625 (656)
Q Consensus 625 ~ 625 (656)
.
T Consensus 474 k 474 (1113)
T KOG0644|consen 474 K 474 (1113)
T ss_pred c
Confidence 3
No 175
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.78 E-value=1e-17 Score=162.86 Aligned_cols=249 Identities=17% Similarity=0.314 Sum_probs=190.4
Q ss_pred eeCCCCeEEEEEcC-----CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEE--eecC
Q 006220 348 INTHNGLNCASISQ-----DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL--YQGH 420 (656)
Q Consensus 348 ~~~~~~V~~l~fs~-----dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~h 420 (656)
.+|...|..++|++ +...+|+. ....+.||........ ..+.. -..|
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatv-G~~rvtiy~c~~d~~i-------------------------r~lq~y~D~d~ 88 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATV-GGNRVTIYECPGDGGI-------------------------RLLQSYADEDH 88 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEe-CCcEEEEEEECCccce-------------------------eeeeeccCCCC
Confidence 34556788888874 33455555 4567889987642210 11111 1146
Q ss_pred ccCEEEEEEccC----CCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecC-CCEEEEEECCCcEEEEECCCC
Q 006220 421 SGPVYSASFSPL----GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRI 495 (656)
Q Consensus 421 ~~~V~~l~~spd----~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~-~~~l~sgs~Dg~i~lwd~~~~ 495 (656)
....+.++|+-+ +.+++.|+.-|.|+|.|+.++++...+.+|...|..+.++|+ .+++++||.|.+|++|++++.
T Consensus 89 ~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~ 168 (385)
T KOG1034|consen 89 DESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD 168 (385)
T ss_pred CcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC
Confidence 777888888764 347999999999999999999999999999999999999995 478999999999999999999
Q ss_pred ceeEEec---CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee------E-------------------E---EEe
Q 006220 496 QPLRIMA---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC------V-------------------R---IFI 544 (656)
Q Consensus 496 ~~~~~~~---~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~------~-------------------~---~~~ 544 (656)
.++.++. +|...|.++.|+++|.+|++++.|.++.+|++...+. . . +-.
T Consensus 169 ~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~d 248 (385)
T KOG1034|consen 169 VCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTD 248 (385)
T ss_pred eEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccc
Confidence 9998876 7999999999999999999999999999999973211 0 0 112
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC-CC-------------eeeEeeeCCCccEEEEEE--cCCCCEEEEEE
Q 006220 545 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA-SG-------------RCVTPLMGHTSCVWTLAY--SCEGSLLASGS 608 (656)
Q Consensus 545 ~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~-~~-------------~~~~~~~~h~~~V~~l~~--s~~~~~l~sgs 608 (656)
-|..+|.|+.|- |.++++-+.++.|..|... -+ ..+.++.-....|+-+.| .+-+++||.|.
T Consensus 249 iHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gn 326 (385)
T KOG1034|consen 249 IHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGN 326 (385)
T ss_pred cccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhcc
Confidence 366677777776 7899999999999999862 11 122333344456676655 56688999999
Q ss_pred CCCcEEEEeCCCCCce
Q 006220 609 ADCTVKLWDVTTSTKV 624 (656)
Q Consensus 609 ~Dg~I~iWd~~~~~~~ 624 (656)
..|.|.+||+++.+..
T Consensus 327 q~g~v~vwdL~~~ep~ 342 (385)
T KOG1034|consen 327 QSGKVYVWDLDNNEPP 342 (385)
T ss_pred CCCcEEEEECCCCCCc
Confidence 9999999999987763
No 176
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.77 E-value=8.8e-16 Score=161.71 Aligned_cols=264 Identities=14% Similarity=0.231 Sum_probs=174.8
Q ss_pred cceecCCCCC-CceeEEEEeeCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCC
Q 006220 330 NRVHLSSAAL-PSVSFYTFINTHNGLNCASISQDGSLVAGGF-SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGP 407 (656)
Q Consensus 330 ~~v~l~~~~~-ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~-~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (656)
+.+.+|+... ..........+.+....++++|++++|++++ .++.|.+|++...+..
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l--------------------- 70 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL--------------------- 70 (330)
T ss_pred CCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce---------------------
Confidence 3455554421 2223333444556788999999999987764 5788999998631110
Q ss_pred CCCceeeEEeecCccCEEEEEEccCCCEEEEEeC-CCeEEEEeccCCc----eeEEeeCCCccEEEEEEecCCCEEEEEE
Q 006220 408 NGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSA-DTTIRLWSTKLNA----NLVCYKGHNYPVWDVQFNPQGHYFASSS 482 (656)
Q Consensus 408 ~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~-Dg~I~lwd~~~~~----~~~~~~~h~~~V~~l~~sp~~~~l~sgs 482 (656)
..... ....+....++|+|+++++++++. ++.|.+|++++.. .+..+. +.....+++++|+++++++++
T Consensus 71 ----~~~~~-~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~ 144 (330)
T PRK11028 71 ----TFAAE-SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPC 144 (330)
T ss_pred ----EEeee-ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEee
Confidence 00010 112234568999999998887764 8899999997432 222222 233467789999999886655
Q ss_pred -CCCcEEEEECCCCceeE-------EecCCCCCeeEEEEcCCCCEEEEEEC-CCcEEEEeCCC--Ce--eEEEEecC---
Q 006220 483 -HDRTARIWSMDRIQPLR-------IMAGHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVSS--GE--CVRIFIGH--- 546 (656)
Q Consensus 483 -~Dg~i~lwd~~~~~~~~-------~~~~~~~~V~~v~~~p~~~~l~tgs~-dg~V~iwd~~~--~~--~~~~~~~h--- 546 (656)
.++.|.+||+++...+. ... .......++|+|+++++++++. +++|.+||+.. +. .+..+..+
T Consensus 145 ~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~ 223 (330)
T PRK11028 145 LKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD 223 (330)
T ss_pred CCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc
Confidence 66999999997633221 111 2244678999999999988876 89999999973 32 23333221
Q ss_pred ---CCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeeeEeeeCCC---ccEEEEEEcCCCCEEEEEEC-CCcEEEEeC
Q 006220 547 ---RSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGRCVTPLMGHT---SCVWTLAYSCEGSLLASGSA-DCTVKLWDV 618 (656)
Q Consensus 547 ---~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~~~~~~~~~~~~h~---~~V~~l~~s~~~~~l~sgs~-Dg~I~iWd~ 618 (656)
......+.++|+|++|+++. .++.|.+|++........+.++. .....+.|+|+|++|++++. +++|.+|++
T Consensus 224 ~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 224 FSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred CCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence 11234688999999999885 47899999986543222222221 24567899999999988775 899999998
Q ss_pred CCC
Q 006220 619 TTS 621 (656)
Q Consensus 619 ~~~ 621 (656)
...
T Consensus 304 ~~~ 306 (330)
T PRK11028 304 DGE 306 (330)
T ss_pred cCC
Confidence 643
No 177
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.77 E-value=1.2e-17 Score=161.97 Aligned_cols=232 Identities=23% Similarity=0.354 Sum_probs=181.8
Q ss_pred CCeEEEEEc-------CCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc--
Q 006220 352 NGLNCASIS-------QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG-- 422 (656)
Q Consensus 352 ~~V~~l~fs-------~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~-- 422 (656)
..|...+|- |+..++|+.+.+.-|++||..++...+.. .-..|..
T Consensus 105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy--------------------------~~ydh~de~ 158 (406)
T KOG2919|consen 105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASY--------------------------RAYDHQDEY 158 (406)
T ss_pred CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccch--------------------------hhhhhHHhh
Confidence 346666664 78899999999999999998764432211 1112333
Q ss_pred -CEEEEEEccCCCEEEEEeCCCeEEEEec-cCCceeEEe-------eCCCccEEEEEEecCC-CEEEEEECCCcEEEEEC
Q 006220 423 -PVYSASFSPLGDFILSSSADTTIRLWST-KLNANLVCY-------KGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSM 492 (656)
Q Consensus 423 -~V~~l~~spd~~~L~s~s~Dg~I~lwd~-~~~~~~~~~-------~~h~~~V~~l~~sp~~-~~l~sgs~Dg~i~lwd~ 492 (656)
.-.++.|+|||..|++|.. ..|+++|+ +.|.....+ .+..+-|.+++|+|.. ..+++|+...++-||.-
T Consensus 159 taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~ 237 (406)
T KOG2919|consen 159 TAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYND 237 (406)
T ss_pred hhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEec
Confidence 3358999999999988765 68999999 444322111 2336678999999955 48999999999999999
Q ss_pred CCCceeEEecCCCCCeeEEEEcCCCCEEEEEEC-CCcEEEEeCCCC-eeEEEEecCCC-CeEE--EEEcCCCCEEEEEEC
Q 006220 493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVSSG-ECVRIFIGHRS-MILS--LAMSPDGRYMASGDE 567 (656)
Q Consensus 493 ~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg~V~iwd~~~~-~~~~~~~~h~~-~i~~--l~~sp~g~~L~s~~~ 567 (656)
....++..+-+|.+.|+.+.|+++|+.|++|+. |..|..||++.. .++..+..|.+ .-.. ....|+|++|++|+.
T Consensus 238 ~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~t 317 (406)
T KOG2919|consen 238 DGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDT 317 (406)
T ss_pred CCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCC
Confidence 999999999999999999999999999999985 678999999864 45555666655 2233 345688999999999
Q ss_pred CCcEEEEeCCC-CeeeEeeeCCCccEEEEEEcCCCCEEEEEECC
Q 006220 568 DGTIMMWDLAS-GRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD 610 (656)
Q Consensus 568 dg~I~iwD~~~-~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~D 610 (656)
||.|++||+.. |..+..+..|+..|+.++++|--.++++++..
T Consensus 318 dG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 318 DGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 99999999988 77788888899999999999998888888765
No 178
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.77 E-value=3.9e-16 Score=154.35 Aligned_cols=236 Identities=18% Similarity=0.279 Sum_probs=181.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (656)
Q Consensus 352 ~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 431 (656)
..++.+.|+.|...|.+|+.||+ ++|+...... +.........|.-+-|+
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k----------------------------~~~~~~~~~~IvEmLFS- 55 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK----------------------------CFSKDTEGVSIVEMLFS- 55 (391)
T ss_pred cceeeeeeccceeEEEccCCCce-eEEecCchHH----------------------------hhcccCCCeEEEEeecc-
Confidence 34677779999999999999885 6777664211 00011112335555566
Q ss_pred CCCEEEEEeCC--CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecC---CCC
Q 006220 432 LGDFILSSSAD--TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG---HLS 506 (656)
Q Consensus 432 d~~~L~s~s~D--g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~---~~~ 506 (656)
..+++..+.+ ..+++.+++.+..+..+. ...+|.++.++. +.++++-.+. |+|||+++.+.+.++.. +..
T Consensus 56 -SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~ 130 (391)
T KOG2110|consen 56 -SSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPK 130 (391)
T ss_pred -cceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCcc
Confidence 4555555544 348999998777776655 456899999974 4566665544 99999999998887763 444
Q ss_pred CeeEEEEcCCCCEEEEEE--CCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCc-EEEEeCCCCeeeE
Q 006220 507 DVDCVRWHINCNYIATGS--SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT-IMMWDLASGRCVT 583 (656)
Q Consensus 507 ~V~~v~~~p~~~~l~tgs--~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~-I~iwD~~~~~~~~ 583 (656)
.+.++++++.+.|++.-+ ..|.|.+||..+-+.+..+..|.+++-|++|+++|.+||++++.|+ |+|+.+.+|+.+.
T Consensus 131 gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~ 210 (391)
T KOG2110|consen 131 GLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLY 210 (391)
T ss_pred ceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEee
Confidence 566666666777988633 4689999999999999999999999999999999999999999886 7999999999999
Q ss_pred eeeCCC--ccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220 584 PLMGHT--SCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 584 ~~~~h~--~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
+++... ..|++++|+|++++|++.|..++|+||.+....
T Consensus 211 eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 211 EFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred eeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 997543 578999999999999999999999999997654
No 179
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.75 E-value=7.7e-17 Score=156.47 Aligned_cols=239 Identities=18% Similarity=0.248 Sum_probs=186.6
Q ss_pred EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
.++-...+|+|.+|++|++.+|++.....|.||...... .......+..|...|+
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~-------------------------~w~~~htls~Hd~~vt 59 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD-------------------------LWEPAHTLSEHDKIVT 59 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCC-------------------------CceeceehhhhCccee
Confidence 445556789999999999999999999999999987421 1345677889999999
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeccC---CceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee----
Q 006220 426 SASFSPLGDFILSSSADTTIRLWSTKL---NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL---- 498 (656)
Q Consensus 426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~---~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~---- 498 (656)
+|.|+|..+.|++|+.|..-++|.... +.....+..++..++++.|+|.++.|++||.-+.|.+|-++...--
T Consensus 60 gvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsK 139 (361)
T KOG1523|consen 60 GVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSK 139 (361)
T ss_pred EEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhh
Confidence 999999999999999999999999832 2344555668899999999999999999999999999988764432
Q ss_pred EEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC-----C-------------CeeEEEEecCCCCeEEEEEcCCCC
Q 006220 499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS-----S-------------GECVRIFIGHRSMILSLAMSPDGR 560 (656)
Q Consensus 499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~-----~-------------~~~~~~~~~h~~~i~~l~~sp~g~ 560 (656)
.+-..+.+.|++++|||++-.+++|+.|+.+|++..- . |+.+..+....+.+..+.|+|+|.
T Consensus 140 hikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~ 219 (361)
T KOG1523|consen 140 HIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN 219 (361)
T ss_pred hhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC
Confidence 2233567889999999999999999999999998641 0 223333434567899999999999
Q ss_pred EEEEEECCCcEEEEeCCCCe-eeEeeeCCCccEEEEEEcCCCCEEEEEECC
Q 006220 561 YMASGDEDGTIMMWDLASGR-CVTPLMGHTSCVWTLAYSCEGSLLASGSAD 610 (656)
Q Consensus 561 ~L~s~~~dg~I~iwD~~~~~-~~~~~~~h~~~V~~l~~s~~~~~l~sgs~D 610 (656)
.|+-.+-|..+.+-|..... .+.....-.-+..++.|-.+.. ++.++.|
T Consensus 220 ~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~-vv~ag~~ 269 (361)
T KOG1523|consen 220 RLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENS-VVAAGYD 269 (361)
T ss_pred EeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCc-eeecCCC
Confidence 99999999999999976554 3333333336677777754433 3344444
No 180
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.5e-16 Score=157.44 Aligned_cols=289 Identities=15% Similarity=0.205 Sum_probs=207.5
Q ss_pred EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
-+.+|.+.|+++.||.++++||+|+.|-.+++|++.......+. ...-..-..|...|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~---------------------KPI~~~~~~H~SNIF 109 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTP---------------------KPIGVMEHPHRSNIF 109 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCC---------------------CCceeccCccccceE
Confidence 35788899999999999999999999999999998752211110 011112234668999
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeC--CCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc-eeE--E
Q 006220 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG--HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ-PLR--I 500 (656)
Q Consensus 426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~--h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~-~~~--~ 500 (656)
|++|...++++++|..+++|.+.|+.+.+.+..+.. ..+.|..+..+|..+.|++.+.++.|.+||.+... ++. .
T Consensus 110 ~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~ 189 (609)
T KOG4227|consen 110 SLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVL 189 (609)
T ss_pred EEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceee
Confidence 999999999999999999999999999888776652 23589999999999999999999999999998654 332 2
Q ss_pred ecCCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCCCee-EEE---EecCC---CCeEEEEEcCCCCEEEEEECCCcEE
Q 006220 501 MAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSSGEC-VRI---FIGHR---SMILSLAMSPDGRYMASGDEDGTIM 572 (656)
Q Consensus 501 ~~~~~~~V~~v~~~p~-~~~l~tgs~dg~V~iwd~~~~~~-~~~---~~~h~---~~i~~l~~sp~g~~L~s~~~dg~I~ 572 (656)
..........+.|+|. ..+|++.+..+-+-+||++.... +.. +.+-. ..-....|+|+|..+++--....-.
T Consensus 190 ~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~ 269 (609)
T KOG4227|consen 190 PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPL 269 (609)
T ss_pred ecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCE
Confidence 2344566788999995 46778888899999999986432 211 11211 1235678999999998877767778
Q ss_pred EEeCCCCeeeEeeeCCC-------ccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecccc--------cCCcccc
Q 006220 573 MWDLASGRCVTPLMGHT-------SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEK--------SGTNRLR 637 (656)
Q Consensus 573 iwD~~~~~~~~~~~~h~-------~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~--------~~~~~~~ 637 (656)
+||+-+.++..--..|. ..+.+++|..|-. +++|+.+-.|++|.+............ ...--..
T Consensus 270 ~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~ 348 (609)
T KOG4227|consen 270 YFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEK 348 (609)
T ss_pred EeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecc
Confidence 89998766544333333 2466788876544 999999999999999765433221110 0001112
Q ss_pred ccccccCCCCCeEEEEEcC
Q 006220 638 SLKTLPTKSTPVYSLQVLR 656 (656)
Q Consensus 638 ~l~~~p~~~~pv~sv~Ftr 656 (656)
-+..+.++.+.+.-|.|++
T Consensus 349 ~~~VLrGHRSv~NQVRF~~ 367 (609)
T KOG4227|consen 349 ELTVLRGHRSVPNQVRFSQ 367 (609)
T ss_pred eeEEEecccccccceeecC
Confidence 3445677777777787764
No 181
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.74 E-value=1.9e-16 Score=157.30 Aligned_cols=213 Identities=18% Similarity=0.276 Sum_probs=169.4
Q ss_pred EeeCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 347 FINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 347 ~~~~~~~V~~l~fs~d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
+.+|.+.|..++|+|- ...+|+|+.|.+|.||++........ .......+.||+..|-
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~---------------------ltepvv~L~gH~rrVg 135 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD---------------------LTEPVVELYGHQRRVG 135 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC---------------------cccceEEEeecceeEE
Confidence 4688999999999994 67799999999999999875332211 1245678999999999
Q ss_pred EEEEccCCC-EEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCC
Q 006220 426 SASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (656)
Q Consensus 426 ~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~ 504 (656)
-+.|+|... .|+|++.|.+|.+|++.++..+..+. |...|++++|+.+|.+|++++.|+.|+|||.++++.+..-.+|
T Consensus 136 ~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~h 214 (472)
T KOG0303|consen 136 LVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAH 214 (472)
T ss_pred EEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccc
Confidence 999999764 78899999999999999999998888 9999999999999999999999999999999999999887777
Q ss_pred CCC-eeEEEEcCCCCEEEEEE---CCCcEEEEeCCCCeeEEEEe--cCCCCeEEEEEcCCCCEEEE-EECCCcEEEEeCC
Q 006220 505 LSD-VDCVRWHINCNYIATGS---SDKTVRLWDVSSGECVRIFI--GHRSMILSLAMSPDGRYMAS-GDEDGTIMMWDLA 577 (656)
Q Consensus 505 ~~~-V~~v~~~p~~~~l~tgs---~dg~V~iwd~~~~~~~~~~~--~h~~~i~~l~~sp~g~~L~s-~~~dg~I~iwD~~ 577 (656)
.+. -..+.|-.+|..+-||. ++..+-+||..+-+....+. ..++.|.---|.++.+.++. |-.|+.|+-|.+.
T Consensus 215 eG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 215 EGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred cCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEec
Confidence 653 34556777888555553 57889999987543222221 23345666667888887765 4579999999987
Q ss_pred CCee
Q 006220 578 SGRC 581 (656)
Q Consensus 578 ~~~~ 581 (656)
...+
T Consensus 295 ~d~P 298 (472)
T KOG0303|consen 295 NEPP 298 (472)
T ss_pred CCCc
Confidence 6553
No 182
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.3e-15 Score=165.68 Aligned_cols=246 Identities=19% Similarity=0.308 Sum_probs=180.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (656)
Q Consensus 350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 429 (656)
|.-.++|.++||+++++|+|..||.|.||.--.. ......++.+.-|..+|.+++|
T Consensus 204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~------------------------~~~~~t~t~lHWH~~~V~~L~f 259 (792)
T KOG1963|consen 204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGS------------------------SDDSETCTLLHWHHDEVNSLSF 259 (792)
T ss_pred hcccceeEEeccccceEEEeccCCcEEEEecccc------------------------ccccccceEEEecccccceeEE
Confidence 3344899999999999999999999999984320 1223466778889999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecC------
Q 006220 430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG------ 503 (656)
Q Consensus 430 spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~------ 503 (656)
+++|.+|+||+..|.+.+|.+.+++ ..-+..-.++|..+.++|++.+.+....|..|.+....+......+.+
T Consensus 260 S~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~ 338 (792)
T KOG1963|consen 260 SSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTP 338 (792)
T ss_pred ecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCc
Confidence 9999999999999999999999988 444555688999999999999999999999999997754433333222
Q ss_pred -----CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEE-----------------------------------
Q 006220 504 -----HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF----------------------------------- 543 (656)
Q Consensus 504 -----~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~----------------------------------- 543 (656)
..+-.+.++++|..+.++..+..|.|.+||+.+...+..+
T Consensus 339 ~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~ 418 (792)
T KOG1963|consen 339 STKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEA 418 (792)
T ss_pred cccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeee
Confidence 1233456677776666666667777777766433222111
Q ss_pred ---------------------------------ecCCCCeEEEEEcC-CCC-EEEEEECCCcEEEEeCCCC---------
Q 006220 544 ---------------------------------IGHRSMILSLAMSP-DGR-YMASGDEDGTIMMWDLASG--------- 579 (656)
Q Consensus 544 ---------------------------------~~h~~~i~~l~~sp-~g~-~L~s~~~dg~I~iwD~~~~--------- 579 (656)
..|...+...++.+ ... ..++++.||.++||-+...
T Consensus 419 ~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~ 498 (792)
T KOG1963|consen 419 RIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSN 498 (792)
T ss_pred eehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccc
Confidence 14555544455443 222 7889999999999988321
Q ss_pred -eeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 580 -RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (656)
Q Consensus 580 -~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~ 621 (656)
.|...-.-|..++++++|+.||.. ++.+.|++|.+||..+.
T Consensus 499 W~c~~i~sy~k~~i~a~~fs~dGsl-la~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 499 WTCKAIGSYHKTPITALCFSQDGSL-LAVSFDDTITIWDYDTK 540 (792)
T ss_pred eEEeeeeccccCcccchhhcCCCcE-EEEecCCEEEEecCCCh
Confidence 222222247789999999999964 55667889999999884
No 183
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=2.1e-16 Score=164.32 Aligned_cols=211 Identities=23% Similarity=0.368 Sum_probs=172.0
Q ss_pred eeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCE--EEEEECCCcEEE
Q 006220 412 RSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY--FASSSHDRTARI 489 (656)
Q Consensus 412 ~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~--l~sgs~Dg~i~l 489 (656)
.....+.||++.|.|++..|.|.+|++|+.||+|+||.+.++.|+..+. ..+.|.||+|+|.+.. ||++- ...+.+
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~~~~i 468 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GECVLI 468 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEe-cCceEE
Confidence 3456789999999999999999999999999999999999999998887 4568999999997654 33333 333444
Q ss_pred EECCCC-------------------------------------ceeEEecCCCCCeeEEEEcCCCCEEEEEECC---CcE
Q 006220 490 WSMDRI-------------------------------------QPLRIMAGHLSDVDCVRWHINCNYIATGSSD---KTV 529 (656)
Q Consensus 490 wd~~~~-------------------------------------~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d---g~V 529 (656)
.+..-+ .-++..-.|...|..+.||..|.||++...+ ..|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 432100 1123444688899999999999999997653 579
Q ss_pred EEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEEC
Q 006220 530 RLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA 609 (656)
Q Consensus 530 ~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~ 609 (656)
.|.++.......-|....+.|.++.|+|...+|++++. ..|+|||+..+..++.+......|.+++.+|.|.-|+.|+.
T Consensus 549 liHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~ 627 (733)
T KOG0650|consen 549 LIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSY 627 (733)
T ss_pred EEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecC
Confidence 99999887776667666788999999999999988875 68999999998888888877788999999999999999999
Q ss_pred CCcEEEEeCCCCCcee
Q 006220 610 DCTVKLWDVTTSTKVL 625 (656)
Q Consensus 610 Dg~I~iWd~~~~~~~~ 625 (656)
|+.+..+|+.-+.+..
T Consensus 628 d~k~~WfDldlsskPy 643 (733)
T KOG0650|consen 628 DKKMCWFDLDLSSKPY 643 (733)
T ss_pred CCeeEEEEcccCcchh
Confidence 9999999998775543
No 184
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.72 E-value=1.8e-16 Score=165.23 Aligned_cols=274 Identities=18% Similarity=0.216 Sum_probs=193.5
Q ss_pred EcCCCCEEEE--EeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc-CCCE
Q 006220 359 ISQDGSLVAG--GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP-LGDF 435 (656)
Q Consensus 359 fs~dg~~La~--g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-d~~~ 435 (656)
|+.+...+|+ .+..|.|-||++...+...... +- -.-....|+.+.|.| |...
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv-----------------------~p-~l~Ngt~vtDl~WdPFD~~r 642 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGV-----------------------MP-GLFNGTLVTDLHWDPFDDER 642 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCccc-----------------------cc-ccccCceeeecccCCCChHH
Confidence 4445566665 4567899999998644322100 00 011346799999999 5568
Q ss_pred EEEEeCCCeEEEEeccCCc-------eeEEeeCCCccEEEEEEec-CCCEEEEEECCCcEEEEECCCCceeEEecCCCCC
Q 006220 436 ILSSSADTTIRLWSTKLNA-------NLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD 507 (656)
Q Consensus 436 L~s~s~Dg~I~lwd~~~~~-------~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~ 507 (656)
|++++.||.|++|.+..+. .-..+..|...|+++.|+| -.+.+++++.|.+|++||+.+.+....+.+|.+.
T Consensus 643 LAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdq 722 (1012)
T KOG1445|consen 643 LAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQ 722 (1012)
T ss_pred eeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCc
Confidence 9999999999999987543 3466788999999999999 4567999999999999999999999999999999
Q ss_pred eeEEEEcCCCCEEEEEECCCcEEEEeCCCCee-EEEEecCC-CCeEEEEEcCCCCEEEEEECC----CcEEEEeCCCC--
Q 006220 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VRIFIGHR-SMILSLAMSPDGRYMASGDED----GTIMMWDLASG-- 579 (656)
Q Consensus 508 V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~-~~~~~~h~-~~i~~l~~sp~g~~L~s~~~d----g~I~iwD~~~~-- 579 (656)
|..++|+|+|+.+++.+.||+|++|..++++. ++.-.+.. ..--.|.|.-+|+++++.+.| ..|.+||..+-
T Consensus 723 If~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~ 802 (1012)
T KOG1445|consen 723 IFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDL 802 (1012)
T ss_pred eeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccC
Confidence 99999999999999999999999999987643 33322221 223457788899999887755 46888887542
Q ss_pred eeeEeeeCCC-ccEEEEEEcCCC-CEEEEEECCCcEEEEeCCCCCcee-ecccccCCccccccccccCCCCCeEEEEEcC
Q 006220 580 RCVTPLMGHT-SCVWTLAYSCEG-SLLASGSADCTVKLWDVTTSTKVL-KTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR 656 (656)
Q Consensus 580 ~~~~~~~~h~-~~V~~l~~s~~~-~~l~sgs~Dg~I~iWd~~~~~~~~-~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ftr 656 (656)
..+.+..-.. -.+.--.+.+|. -++++|-.|..|.+|.+-....-. ..........-..+.+++....-|.+|.|++
T Consensus 803 ~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp~~hqGl~fl~K~~CdV~~VEf~~ 882 (1012)
T KOG1445|consen 803 RPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSPVGHQGLAFLQKLKCDVMAVEFQV 882 (1012)
T ss_pred CcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCCceeeecccccCCCcccceeeecccccceeeeehhh
Confidence 2332221110 011111234454 467888899999999987655432 2222233334456777888888888888864
No 185
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.72 E-value=2.5e-16 Score=157.29 Aligned_cols=232 Identities=24% Similarity=0.403 Sum_probs=172.6
Q ss_pred CccCEEEEEEccCCC-EEEEEeCCCeEEEEeccCCce---------eEEeeCCCccEEEEEEecCCCEEEEEECCCcEEE
Q 006220 420 HSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNAN---------LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARI 489 (656)
Q Consensus 420 h~~~V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~---------~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~l 489 (656)
...+|+++.|.+++. .++||+.|..|++|-+..+.. +..+..|...|+++.|+|+|..+++|+.+|.+.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 346899999999877 999999999999998764322 2345679999999999999999999999999999
Q ss_pred EECC--------C--------CceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEE
Q 006220 490 WSMD--------R--------IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSL 553 (656)
Q Consensus 490 wd~~--------~--------~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l 553 (656)
|-.. + ....+.+.+|...|..++|+|+++++++|+.|..+++||+..|+....+..|...+..+
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV 171 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence 9755 2 12335667899999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCCeeeEeee-------------------CCC----ccEEEEEEcCCCCEEEEEECC
Q 006220 554 AMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-------------------GHT----SCVWTLAYSCEGSLLASGSAD 610 (656)
Q Consensus 554 ~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~-------------------~h~----~~V~~l~~s~~~~~l~sgs~D 610 (656)
+|.|-++++++-+.|...+.+++...+.+.... .|. .....++|+|+|.+|++.+.
T Consensus 172 awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag- 250 (434)
T KOG1009|consen 172 AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAG- 250 (434)
T ss_pred ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccc-
Confidence 999999999999999888887775443332211 111 12345789999999988642
Q ss_pred CcEEEEeCCCCCceeecccccCCccccccccccCCCCCeEEEEEcC
Q 006220 611 CTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQVLR 656 (656)
Q Consensus 611 g~I~iWd~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~pv~sv~Ftr 656 (656)
++++..+......--..+......+..+|.-..|++.+.|++
T Consensus 251 ----~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~p 292 (434)
T KOG1009|consen 251 ----LFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSP 292 (434)
T ss_pred ----eeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeee
Confidence 111111111000000011122234556677777777777763
No 186
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=6.8e-16 Score=168.11 Aligned_cols=219 Identities=19% Similarity=0.197 Sum_probs=158.1
Q ss_pred EEeeCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220 346 TFINTHNGLNCASISQDGSLVAGGFSD---SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (656)
Q Consensus 346 ~~~~~~~~V~~l~fs~dg~~La~g~~d---g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 422 (656)
.+..+...+.+.+|||||+.||.++.+ ..|.+||+.+.. ......+.+|
T Consensus 198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~--------------------------~~~l~~~~g~-- 249 (429)
T PRK01742 198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA--------------------------RKVVASFRGH-- 249 (429)
T ss_pred EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc--------------------------eEEEecCCCc--
Confidence 445667789999999999999987653 369999986421 1112222233
Q ss_pred CEEEEEEccCCCEEEEEe-CCCeEEEE--eccCCceeEEeeCCCccEEEEEEecCCCEEEEEE-CCCcEEEEECCCC-ce
Q 006220 423 PVYSASFSPLGDFILSSS-ADTTIRLW--STKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRI-QP 497 (656)
Q Consensus 423 ~V~~l~~spd~~~L~s~s-~Dg~I~lw--d~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs-~Dg~i~lwd~~~~-~~ 497 (656)
..+++|+|||+.|+.++ .+|.+.|| |+.++. ...+..+...+....|+|+|..++.++ .+|...+|+++.. ..
T Consensus 250 -~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~ 327 (429)
T PRK01742 250 -NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG 327 (429)
T ss_pred -cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 34689999999888764 67876665 555544 445556677788999999999877665 5788888876532 22
Q ss_pred eEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC-
Q 006220 498 LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL- 576 (656)
Q Consensus 498 ~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~- 576 (656)
...+ .+.. .+..|+|+|++|++++.++ +.+||+.++........+ ....+.|+|+|++|+.++.+|.+.+|++
T Consensus 328 ~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 328 ASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred eEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 2333 3433 4678999999999887765 556999988765433222 3456789999999999999998888876
Q ss_pred -CCCeeeEeeeCCCccEEEEEEcCC
Q 006220 577 -ASGRCVTPLMGHTSCVWTLAYSCE 600 (656)
Q Consensus 577 -~~~~~~~~~~~h~~~V~~l~~s~~ 600 (656)
.+|+....+..|.+.+...+|+|-
T Consensus 402 ~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 402 SADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ECCCCceEEccCCCCCCCCcccCCC
Confidence 368888888888888999999984
No 187
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.6e-16 Score=164.64 Aligned_cols=232 Identities=23% Similarity=0.417 Sum_probs=176.6
Q ss_pred CCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEe
Q 006220 338 ALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417 (656)
Q Consensus 338 ~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 417 (656)
.....+.++|-+|.++|.|+++++++..+.+|+.||+|+.|++..... ..+ ..........+
T Consensus 331 ~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~d---------p~d---------s~dp~vl~~~l 392 (577)
T KOG0642|consen 331 EKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQD---------PDD---------SYDPSVLSGTL 392 (577)
T ss_pred ccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCC---------ccc---------ccCcchhccce
Confidence 445677899999999999999999999999999999999999863110 000 00112344568
Q ss_pred ecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEee---CCCccEEEEEEecCC-CEEEEEECCCcEEEEECC
Q 006220 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK---GHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMD 493 (656)
Q Consensus 418 ~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~---~h~~~V~~l~~sp~~-~~l~sgs~Dg~i~lwd~~ 493 (656)
.||.+.|+.+++|+....|++|+.||++++|....... ..+. .|..| .++.+-... .+.++...-+...+++++
T Consensus 393 ~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~P-lsvd~~ss~~a~~~~s~~~~~~~~~~~e 470 (577)
T KOG0642|consen 393 LGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYP-LSVDRTSSRPAHSLASFRFGYTSIDDME 470 (577)
T ss_pred eccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCc-ceEeeccchhHhhhhhcccccccchhhh
Confidence 89999999999999999999999999999999876555 2232 23333 244443322 223333333444455555
Q ss_pred CCceeEEecC-------CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 006220 494 RIQPLRIMAG-------HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD 566 (656)
Q Consensus 494 ~~~~~~~~~~-------~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~ 566 (656)
....+..+.. ....+.-+.++|+....+++..|+.|+++|..++..+.....|...++++++.|+|-+|++++
T Consensus 471 v~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s 550 (577)
T KOG0642|consen 471 VVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGS 550 (577)
T ss_pred hhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeec
Confidence 5555555442 124577889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCeeeEeeeCCC
Q 006220 567 EDGTIMMWDLASGRCVTPLMGHT 589 (656)
Q Consensus 567 ~dg~I~iwD~~~~~~~~~~~~h~ 589 (656)
.||.+++|.+....++.....|.
T Consensus 551 ~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 551 HDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred CCceeehhhccchheeecccccc
Confidence 99999999998888877766664
No 188
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=5.1e-16 Score=169.06 Aligned_cols=195 Identities=18% Similarity=0.243 Sum_probs=142.0
Q ss_pred EEeecCccCEEEEEEccCCCEEEEEeCC---CeEEEEeccCCce--eEEeeCCCccEEEEEEecCCCEEEEEE-CCCcEE
Q 006220 415 TLYQGHSGPVYSASFSPLGDFILSSSAD---TTIRLWSTKLNAN--LVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTAR 488 (656)
Q Consensus 415 ~~l~~h~~~V~~l~~spd~~~L~s~s~D---g~I~lwd~~~~~~--~~~~~~h~~~V~~l~~sp~~~~l~sgs-~Dg~i~ 488 (656)
..+..|...+.+.+|||||+.|+.++.+ ..|++||+.++.. +..+.+| ...++|+|+|+.|+.++ .+|.+.
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~ 273 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLN 273 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEE
Confidence 3455678889999999999999887654 4799999987754 3333333 34689999999888765 678665
Q ss_pred EE--ECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCC-eeEEEEecCCCCeEEEEEcCCCCEEEE
Q 006220 489 IW--SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPDGRYMAS 564 (656)
Q Consensus 489 lw--d~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~-~~~~~~~~h~~~i~~l~~sp~g~~L~s 564 (656)
+| |+.++. ...+..+...+....|+|+|+.|+.++ .+|...||++... .....+ ++.+ .+..|+|+|++|+.
T Consensus 274 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~ 349 (429)
T PRK01742 274 IYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVM 349 (429)
T ss_pred EEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEE
Confidence 55 665554 444556667788999999999877655 5788888876532 222333 4443 46789999999998
Q ss_pred EECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619 (656)
Q Consensus 565 ~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~ 619 (656)
++.++ +.+||+.+++.......+ ...+++|+|+|++|+.++.+|.+.+|++.
T Consensus 350 ~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 350 INGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred EcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 87765 666999888654322222 23567899999999999999999988864
No 189
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.71 E-value=7.1e-16 Score=147.80 Aligned_cols=245 Identities=18% Similarity=0.294 Sum_probs=178.9
Q ss_pred eeCCCCeEEEEEcCCC-----CEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220 348 INTHNGLNCASISQDG-----SLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (656)
Q Consensus 348 ~~~~~~V~~l~fs~dg-----~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 422 (656)
+.|.-+++.+-|.|+. .+||+. +..+|+|.+......... ...+ ....-..+.+
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~------------~~~L-------~~~kns~~~a 151 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVEL------------QSVL-------NNNKNSEFCA 151 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceeh------------hhhh-------ccCcccccCC
Confidence 5677789999999986 356654 458999998742111000 0000 1111335678
Q ss_pred CEEEEEEccC-CCEEEEEeCCCeEEEEeccCCce---eEEeeCCCccEEEEEEecCC-CEEEEEECCCcEEEEECCCCce
Q 006220 423 PVYSASFSPL-GDFILSSSADTTIRLWSTKLNAN---LVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSMDRIQP 497 (656)
Q Consensus 423 ~V~~l~~spd-~~~L~s~s~Dg~I~lwd~~~~~~---~~~~~~h~~~V~~l~~sp~~-~~l~sgs~Dg~i~lwd~~~~~~ 497 (656)
++++..|+.- -+++.++|-|.+..|||+.++.. ...+-.|...|.+++|...+ ..|+++|.||.++++|++....
T Consensus 152 PlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH 231 (364)
T KOG0290|consen 152 PLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH 231 (364)
T ss_pred cccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc
Confidence 9999999874 46788999999999999998733 44566799999999999854 5799999999999999987655
Q ss_pred eEEecC---CCCCeeEEEEcC-CCCEEEEEECC-CcEEEEeCCC-CeeEEEEecCCCCeEEEEEcCC-CCEEEEEECCCc
Q 006220 498 LRIMAG---HLSDVDCVRWHI-NCNYIATGSSD-KTVRLWDVSS-GECVRIFIGHRSMILSLAMSPD-GRYMASGDEDGT 570 (656)
Q Consensus 498 ~~~~~~---~~~~V~~v~~~p-~~~~l~tgs~d-g~V~iwd~~~-~~~~~~~~~h~~~i~~l~~sp~-g~~L~s~~~dg~ 570 (656)
..++-. ...+...++|++ +-+|+||-..| ..|.|.|++. +.++..+.+|.+.|+.|+|.|. +..|+++|.|..
T Consensus 232 STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q 311 (364)
T KOG0290|consen 232 STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ 311 (364)
T ss_pred ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce
Confidence 444432 235678889986 55788875554 5699999986 5678889999999999999995 568999999999
Q ss_pred EEEEeCCCCee------eEeeeCCCccEEEEEEcC-CCCEEEEEECCCcEEE
Q 006220 571 IMMWDLASGRC------VTPLMGHTSCVWTLAYSC-EGSLLASGSADCTVKL 615 (656)
Q Consensus 571 I~iwD~~~~~~------~~~~~~h~~~V~~l~~s~-~~~~l~sgs~Dg~I~i 615 (656)
+.|||+...-. +-.+ .-.+.|..+.|++ .+..++.+. ++++.|
T Consensus 312 aliWDl~q~~~~~~~dPilay-~a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 312 ALIWDLQQMPRENGEDPILAY-TAGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred EEEEecccccccCCCCchhhh-hccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 99999975322 1112 2456899999996 566776665 344444
No 190
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.8e-16 Score=159.49 Aligned_cols=197 Identities=25% Similarity=0.347 Sum_probs=159.5
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecC-
Q 006220 425 YSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG- 503 (656)
Q Consensus 425 ~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~- 503 (656)
.+++|+++|..+++|+.||++|+|+......+.....|...|.++.|+|||..+++-+.| .++||+++++.++.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 689999999999999999999999988787777778899999999999999999999999 999999999876655542
Q ss_pred -CCCCeeEEEEcCCC---CEEE--EEECCCcEEEEeCCCCee-----EEEEecCCCCeEEEEEcCCCCEEEEEECCCcEE
Q 006220 504 -HLSDVDCVRWHINC---NYIA--TGSSDKTVRLWDVSSGEC-----VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIM 572 (656)
Q Consensus 504 -~~~~V~~v~~~p~~---~~l~--tgs~dg~V~iwd~~~~~~-----~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~ 572 (656)
.......+.|+.++ .+.+ .....+.|+.||+....- .+........|++++.|++|++++.|+.||.|.
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 22345677887665 3332 233456777777653221 122222334699999999999999999999999
Q ss_pred EEeCCCCeeeEeee-CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220 573 MWDLASGRCVTPLM-GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 573 iwD~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
|++..+.+++.-.+ .|...|+.+.|+|+.+++++.+.|..+.|..+.-..
T Consensus 307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~ 357 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDK 357 (398)
T ss_pred EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeecc
Confidence 99999888887665 799999999999999999999999999998876543
No 191
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.70 E-value=1.3e-17 Score=178.68 Aligned_cols=212 Identities=23% Similarity=0.461 Sum_probs=173.7
Q ss_pred eeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEEC
Q 006220 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM 492 (656)
Q Consensus 413 ~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~ 492 (656)
.++.+.||...|||+.|...|.++++|+.|..|+||++.+..++....||.+.|++++.+.+..+++++|.|..|++|.+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence 45668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC--------------eeEEEEe----------c---
Q 006220 493 DRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG--------------ECVRIFI----------G--- 545 (656)
Q Consensus 493 ~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~--------------~~~~~~~----------~--- 545 (656)
..+.++..+.+|.+.|++++|+|-. +.+.||++++||.+-. ..+-.+. +
T Consensus 262 ~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d 337 (1113)
T KOG0644|consen 262 PDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRD 337 (1113)
T ss_pred CCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCC
Confidence 9999999999999999999999954 7788999999998711 0000000 0
Q ss_pred ---CCCCeEEEEEcCCC-----------CEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCC-CEEEEEECC
Q 006220 546 ---HRSMILSLAMSPDG-----------RYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEG-SLLASGSAD 610 (656)
Q Consensus 546 ---h~~~i~~l~~sp~g-----------~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~-~~l~sgs~D 610 (656)
....+.+++|...+ .+.+++-.+..+++|++.+|..++.+.+|...++.+.++|-+ .+..+++.|
T Consensus 338 ~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~d 417 (1113)
T KOG0644|consen 338 GEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYD 417 (1113)
T ss_pred cccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCC
Confidence 00011122222222 234444456778999999999999999999999999999954 556789999
Q ss_pred CcEEEEeCCCCCceeecc
Q 006220 611 CTVKLWDVTTSTKVLKTE 628 (656)
Q Consensus 611 g~I~iWd~~~~~~~~~~~ 628 (656)
|...|||+..+.++....
T Consensus 418 gst~iwdi~eg~pik~y~ 435 (1113)
T KOG0644|consen 418 GSTIIWDIWEGIPIKHYF 435 (1113)
T ss_pred CceEeeecccCCcceeee
Confidence 999999999988876554
No 192
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.70 E-value=4.6e-16 Score=159.69 Aligned_cols=185 Identities=17% Similarity=0.271 Sum_probs=148.4
Q ss_pred EeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 006220 416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI 495 (656)
Q Consensus 416 ~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~ 495 (656)
....|.+.|.|-.|+|+|.-|+++++||.|++|+-. |-...++-....+|.|++|.|+.+.++.|.. +.+.+=.+...
T Consensus 99 sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n 176 (737)
T KOG1524|consen 99 SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAAN 176 (737)
T ss_pred hhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeecccc
Confidence 355799999999999999999999999999999865 3333333345678999999998877666543 56777677666
Q ss_pred ceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220 496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575 (656)
Q Consensus 496 ~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD 575 (656)
..+.....|.+-|.|+.|++.++.+++|+.|-..++||. .|..+..-..|..+|++++|.|+ ..++.++. +++++
T Consensus 177 ~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~-- 251 (737)
T KOG1524|consen 177 SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARF-- 251 (737)
T ss_pred cceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccc-cceeeeee-eeeee--
Confidence 666677889999999999999999999999999999995 56666666789999999999999 55555553 33441
Q ss_pred CCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEE
Q 006220 576 LASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLW 616 (656)
Q Consensus 576 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iW 616 (656)
-....+.|..++||+||..++.|+..|.+.+=
T Consensus 252 ---------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 252 ---------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ---------cCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 11345789999999999999999999987653
No 193
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.69 E-value=1.5e-15 Score=147.65 Aligned_cols=203 Identities=21% Similarity=0.283 Sum_probs=171.1
Q ss_pred CccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCc---eeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECC-CC
Q 006220 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA---NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD-RI 495 (656)
Q Consensus 420 h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~---~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~-~~ 495 (656)
-..+|+|.+|++|...++.+.....|.||.....+ ...+++.|...|++|+|+|..+.|++|+.|+..++|... .+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 45799999999999999999999999999987544 577888999999999999999999999999999999983 32
Q ss_pred --ceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeE----EEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 006220 496 --QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECV----RIFIGHRSMILSLAMSPDGRYMASGDEDG 569 (656)
Q Consensus 496 --~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~----~~~~~h~~~i~~l~~sp~g~~L~s~~~dg 569 (656)
++.-.+..+....+||.|+|+++.+|+|+..+.|.+|-....+-- .+-+.+.+.|+++.|+|++-+|++|+.|+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence 455566678899999999999999999999999999987654322 23345678899999999999999999999
Q ss_pred cEEEEeCC------------------CCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220 570 TIMMWDLA------------------SGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 570 ~I~iwD~~------------------~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
..++|..- -|.++.++....+.|..+.|+|+|..|+-.+.|+++.+=|...+.
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 99999641 133444444456789999999999999999999999999987764
No 194
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=2.3e-15 Score=140.94 Aligned_cols=200 Identities=20% Similarity=0.353 Sum_probs=155.8
Q ss_pred cCEEEEEEccCCCEEEEEeCCCeEEEEeccC----------CceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEE
Q 006220 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKL----------NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~----------~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd 491 (656)
..|.+-+|+|.+++|+.|..+|+|.+.++.. ...+...++|.+||..++|. ..++++|+ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 3466778999999999999999999998763 22355668999999999998 44566665 59999997
Q ss_pred CCCCc-------------eeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCC
Q 006220 492 MDRIQ-------------PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD 558 (656)
Q Consensus 492 ~~~~~-------------~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~ 558 (656)
.+... |.+.-...-..|+++-..|..+.+++++.|+.++-||+.+|+..+.++||+..|.++.--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 64321 11111122356899999998888888889999999999999999999999999999998555
Q ss_pred CCEEEEEECCCcEEEEeCCCCeeeEeeeC---------CC-ccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220 559 GRYMASGDEDGTIMMWDLASGRCVTPLMG---------HT-SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 559 g~~L~s~~~dg~I~iwD~~~~~~~~~~~~---------h~-~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
...+++|++||++++||+++++++..+.. |. ..|-+++- +..+|++|+. -.+.+|.+++.+.....
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t~vf 243 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSESTCVF 243 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCCCceEEE
Confidence 66789999999999999999999887742 22 23555554 4557877764 47899999998876544
No 195
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=5.8e-16 Score=155.84 Aligned_cols=195 Identities=25% Similarity=0.367 Sum_probs=154.0
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCC
Q 006220 355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD 434 (656)
Q Consensus 355 ~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~ 434 (656)
.+++|+.+|+.|++|+.||++|||++... ........|.+.|.++.|+|||+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~----------------------------~t~l~e~~~~~eV~DL~FS~dgk 199 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM----------------------------LTILEEIAHHAEVKDLDFSPDGK 199 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc----------------------------hhhhhhHhhcCccccceeCCCCc
Confidence 78999999999999999999999997642 12333557999999999999999
Q ss_pred EEEEEeCCCeEEEEeccCCceeEEee--CCCccEEEEEEecCC---C--EEEEEECCCcEEEEECCCCc-----eeEEec
Q 006220 435 FILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQG---H--YFASSSHDRTARIWSMDRIQ-----PLRIMA 502 (656)
Q Consensus 435 ~L~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp~~---~--~l~sgs~Dg~i~lwd~~~~~-----~~~~~~ 502 (656)
+|++-+.| ..+||+++++.++.... ........+.|+.++ . .++....-+.|+.|++...+ +.+...
T Consensus 200 ~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~ 278 (398)
T KOG0771|consen 200 FLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI 278 (398)
T ss_pred EEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh
Confidence 99999999 89999999997665544 234456678888776 3 33333455667776654221 222222
Q ss_pred CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEE-ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (656)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~-~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~ 578 (656)
.....|++++.+++|++++.|+.||.|-|++..+-+++... ..|...|+.+.|+|+.+++++.+.|..+.+..+.-
T Consensus 279 ~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 279 KRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred hccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 33457999999999999999999999999999988877654 47999999999999999999999999888887753
No 196
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=8e-14 Score=135.69 Aligned_cols=236 Identities=16% Similarity=0.245 Sum_probs=168.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCC
Q 006220 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG 433 (656)
Q Consensus 354 V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~ 433 (656)
..+++|+.|...+++|..+| .+||+++..+...... ...-.-.+.-+-|- .
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~--------------------------~~~~G~~~veMLfR--~ 58 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQ--------------------------FIDGGFKIVEMLFR--S 58 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhc--------------------------cccCchhhhhHhhh--h
Confidence 44599999999999996665 7999988632211100 00000111112221 2
Q ss_pred CEEE-EEeCC------CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECC-CCceeEEecCCC
Q 006220 434 DFIL-SSSAD------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD-RIQPLRIMAGHL 505 (656)
Q Consensus 434 ~~L~-s~s~D------g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~-~~~~~~~~~~~~ 505 (656)
++|+ +|+.+ ..|.|||-....++..+. ...+|.++.+.++ .+++.- .+.|++|... +.+.++.+....
T Consensus 59 N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~ 134 (346)
T KOG2111|consen 59 NYLALVGGGSRPKYPPNKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRS 134 (346)
T ss_pred ceEEEecCCCCCCCCCceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeeccc
Confidence 3333 33333 479999966666666665 6779999999865 444443 5789999987 667776665332
Q ss_pred --CCeeEEEEcCCCCEEEE-EECCCcEEEEeCCCCee--EEEEecCCCCeEEEEEcCCCCEEEEEECCCc-EEEEeCCCC
Q 006220 506 --SDVDCVRWHINCNYIAT-GSSDKTVRLWDVSSGEC--VRIFIGHRSMILSLAMSPDGRYMASGDEDGT-IMMWDLASG 579 (656)
Q Consensus 506 --~~V~~v~~~p~~~~l~t-gs~dg~V~iwd~~~~~~--~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~-I~iwD~~~~ 579 (656)
..+.+++-+.+..+||. |-.-|.|+|-|+...+. ...+.+|.+.|.|++.+-+|..+||++..|+ |+|||..+|
T Consensus 135 NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g 214 (346)
T KOG2111|consen 135 NPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG 214 (346)
T ss_pred CCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC
Confidence 33444433334455555 45679999999986655 4778899999999999999999999999886 899999999
Q ss_pred eeeEeeeCC--CccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220 580 RCVTPLMGH--TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 580 ~~~~~~~~h--~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
+.+.+++.. ...|++++|||++.+|+++|.-|+|.|+.+....
T Consensus 215 ~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 215 TLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred cEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 999998742 3689999999999999999999999999998754
No 197
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.66 E-value=1.9e-16 Score=160.29 Aligned_cols=231 Identities=20% Similarity=0.258 Sum_probs=194.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccC
Q 006220 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL 432 (656)
Q Consensus 353 ~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 432 (656)
+-..+.++.+|++|+.|+..|.|-.+|+.+.... ....-...|.++.|-.+
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~-----------------------------~Ei~v~Etv~Dv~~LHn 181 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLH-----------------------------FEINVMETVRDVTFLHN 181 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceee-----------------------------eeeehhhhhhhhhhhcc
Confidence 4567889999999999999999999998763221 11122356888999888
Q ss_pred CCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEE
Q 006220 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR 512 (656)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~ 512 (656)
.++++++- ...+.|||-. |..+++++.|. .|..+.|-|..-+|++++..|.++--|+.+++.+..+....+.+..++
T Consensus 182 eq~~AVAQ-K~y~yvYD~~-GtElHClk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~ 258 (545)
T KOG1272|consen 182 EQFFAVAQ-KKYVYVYDNN-GTELHCLKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMK 258 (545)
T ss_pred hHHHHhhh-hceEEEecCC-CcEEeehhhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhh
Confidence 77777765 4689999976 88889988655 689999999998999999999999999999999999988888999999
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccE
Q 006220 513 WHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCV 592 (656)
Q Consensus 513 ~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V 592 (656)
-+|-...+-+|...|+|.+|.....+++..+..|.++|.+|++.++|+|++|.|.|..++|||++....+.++.. ..+.
T Consensus 259 qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a 337 (545)
T KOG1272|consen 259 QNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPA 337 (545)
T ss_pred cCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCc
Confidence 999888999999999999999999999888889999999999999999999999999999999998887766654 3456
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220 593 WTLAYSCEGSLLASGSADCTVKLWDV 618 (656)
Q Consensus 593 ~~l~~s~~~~~l~sgs~Dg~I~iWd~ 618 (656)
..+++|..| ++++|....|.||.=
T Consensus 338 ~~ls~Sqkg--lLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 338 SNLSLSQKG--LLALSYGDHVQIWKD 361 (545)
T ss_pred ccccccccc--ceeeecCCeeeeehh
Confidence 788888765 333444557999963
No 198
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=1.6e-14 Score=158.79 Aligned_cols=244 Identities=20% Similarity=0.292 Sum_probs=177.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc-
Q 006220 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP- 431 (656)
Q Consensus 353 ~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp- 431 (656)
.-..+.|+|=...++++...-.|+|||......... +..-......|+.+.+-.
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~-------------------------F~n~~~~~t~Vs~l~liNe 1120 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNG-------------------------FDNGAFPDTRVSDLELINE 1120 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceecc-------------------------ccCCCCCCCccceeeeecc
Confidence 466788999888999998788999999986322110 000002335678888765
Q ss_pred -CCCEEEEEeCCCeEEEEeccC-----CceeEEeeC-------CCccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 006220 432 -LGDFILSSSADTTIRLWSTKL-----NANLVCYKG-------HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL 498 (656)
Q Consensus 432 -d~~~L~s~s~Dg~I~lwd~~~-----~~~~~~~~~-------h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~ 498 (656)
|..++++|+.||.|+||+--. .+.+..+.+ ..+.-.-+.|.....+++++|.-+.|+|||......+
T Consensus 1121 ~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~ 1200 (1387)
T KOG1517|consen 1121 QDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVV 1200 (1387)
T ss_pred cchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeE
Confidence 345899999999999997421 122222211 1111234678887777777777899999999988777
Q ss_pred EEec-CCCCCeeEEEEc-CCCCEEEEEECCCcEEEEeCCCCe---eEEEEecCCCC--eEEEEEcCCCC-EEEEEECCCc
Q 006220 499 RIMA-GHLSDVDCVRWH-INCNYIATGSSDKTVRLWDVSSGE---CVRIFIGHRSM--ILSLAMSPDGR-YMASGDEDGT 570 (656)
Q Consensus 499 ~~~~-~~~~~V~~v~~~-p~~~~l~tgs~dg~V~iwd~~~~~---~~~~~~~h~~~--i~~l~~sp~g~-~L~s~~~dg~ 570 (656)
..+. +....|+++.-+ +.|+.+++|..||.||+||.+... .+...+.|... |..+.+.+.|- .|++|+.||.
T Consensus 1201 ~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~ 1280 (1387)
T KOG1517|consen 1201 ADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD 1280 (1387)
T ss_pred eecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe
Confidence 7665 444557776554 467999999999999999998643 46777888887 99999999775 5999999999
Q ss_pred EEEEeCCCCeeeE--eeeCCC--c-cEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220 571 IMMWDLASGRCVT--PLMGHT--S-CVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 571 I~iwD~~~~~~~~--~~~~h~--~-~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
|++||++...... .+..|. + .++++..+++..++|+|+. +.|+||++....
T Consensus 1281 I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1281 IQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ 1336 (1387)
T ss_pred EEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh
Confidence 9999998742222 222333 3 5899999999999999998 999999997644
No 199
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=4.4e-15 Score=163.18 Aligned_cols=251 Identities=17% Similarity=0.245 Sum_probs=180.4
Q ss_pred CCeEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCC--cccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEE
Q 006220 352 NGLNCASISQ--DGSLVAGGFSDSSLKVWDMAKLG--QQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (656)
Q Consensus 352 ~~V~~l~fs~--dg~~La~g~~dg~I~Iwdl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 427 (656)
..|+.+.+-. |..++.+|+.||.|+||+-.... ........ ........+-.+.=.-+
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw------------------~~Ls~~~~~~r~~~~v~ 1171 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAW------------------SSLSDQLPGARGTGLVV 1171 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEee------------------ccccccCccCCCCCeee
Confidence 4588888753 57789999999999999854321 00000000 00000011111222456
Q ss_pred EEccCCCEEEEEeCCCeEEEEeccCCceeEEeeC-CCccEEEEEEec-CCCEEEEEECCCcEEEEECCCCc---eeEEec
Q 006220 428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQ---PLRIMA 502 (656)
Q Consensus 428 ~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp-~~~~l~sgs~Dg~i~lwd~~~~~---~~~~~~ 502 (656)
.|.....+|++++.-..|+|||.....++..+.. ....|+++.-+. .|+.++.|..||.+++||.+... .+...+
T Consensus 1172 dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R 1251 (1387)
T KOG1517|consen 1172 DWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR 1251 (1387)
T ss_pred ehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec
Confidence 8888777888888788999999997777666543 344566554433 57999999999999999987543 466777
Q ss_pred CCCCC--eeEEEEcCCCCE-EEEEECCCcEEEEeCCCCeeEE--EEecCC--C-CeEEEEEcCCCCEEEEEECCCcEEEE
Q 006220 503 GHLSD--VDCVRWHINCNY-IATGSSDKTVRLWDVSSGECVR--IFIGHR--S-MILSLAMSPDGRYMASGDEDGTIMMW 574 (656)
Q Consensus 503 ~~~~~--V~~v~~~p~~~~-l~tgs~dg~V~iwd~~~~~~~~--~~~~h~--~-~i~~l~~sp~g~~L~s~~~dg~I~iw 574 (656)
.|... |..+.+.++|-- |++|+.+|.|++||++...... ....|. + ..+++..+++...+|+|+. +.|.||
T Consensus 1252 ~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy 1330 (1387)
T KOG1517|consen 1252 EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIY 1330 (1387)
T ss_pred ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEE
Confidence 88877 999999987754 9999999999999999853222 222332 3 5999999999999999998 999999
Q ss_pred eCCCCeeeEeeeCC-------CccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220 575 DLASGRCVTPLMGH-------TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 575 D~~~~~~~~~~~~h-------~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
++ .|+.+..++.+ .+.+.|++|+|..-++|+|+.|.+|.||....+.
T Consensus 1331 ~~-~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1331 SL-SGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ec-ChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 98 45555544322 2578999999999999999999999999986643
No 200
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=8.3e-16 Score=158.24 Aligned_cols=213 Identities=27% Similarity=0.475 Sum_probs=164.1
Q ss_pred EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
.+.+|.+.|+|++|+.||.+|++|+.|-.+.|||.... +.....-.||.+.|.
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~---------------------------KllhsI~TgHtaNIF 97 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY---------------------------KLLHSISTGHTANIF 97 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhc---------------------------ceeeeeeccccccee
Confidence 36789999999999999999999999999999997631 234455679999999
Q ss_pred EEEEcc--CCCEEEEEeCCCeEEEEeccC----------CceeEEeeCCCccEEEEEEecCC-CEEEEEECCCcEEEEEC
Q 006220 426 SASFSP--LGDFILSSSADTTIRLWSTKL----------NANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWSM 492 (656)
Q Consensus 426 ~l~~sp--d~~~L~s~s~Dg~I~lwd~~~----------~~~~~~~~~h~~~V~~l~~sp~~-~~l~sgs~Dg~i~lwd~ 492 (656)
|+.|-| .++.+++|+.|..|+++|+.. ......+..|...|..++-.|++ +.|.+++.||+|+-+|+
T Consensus 98 svKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDi 177 (758)
T KOG1310|consen 98 SVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDI 177 (758)
T ss_pred EEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecc
Confidence 999998 456899999999999999984 23356677899999999999988 88999999999999999
Q ss_pred CCCcee----------EEecCCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCC--------C----------eeEEEE
Q 006220 493 DRIQPL----------RIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSS--------G----------ECVRIF 543 (656)
Q Consensus 493 ~~~~~~----------~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~--------~----------~~~~~~ 543 (656)
+....- ..+.+..-...|+..+| +..+|++|+.|-..++||.+. + .|++-|
T Consensus 178 REph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf 257 (758)
T KOG1310|consen 178 REPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYF 257 (758)
T ss_pred cCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhhee
Confidence 863211 11112223467899998 456889999999999999531 1 133333
Q ss_pred e-cCC-----------CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEee
Q 006220 544 I-GHR-----------SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL 585 (656)
Q Consensus 544 ~-~h~-----------~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~ 585 (656)
. +|. ..++-++|+|+|.-|+..-..-.|+++|+..++....+
T Consensus 258 ~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 258 SPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred cCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 2 221 12566889999987777666668999999888766554
No 201
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.66 E-value=1.3e-14 Score=157.81 Aligned_cols=205 Identities=17% Similarity=0.223 Sum_probs=156.4
Q ss_pred CccCEEEEEEccCC-CEEEEEeCCCeEEEEeccCCce--eE----EeeCCCccEEEEEEecCCCE--EEEEECCCcEEEE
Q 006220 420 HSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLNAN--LV----CYKGHNYPVWDVQFNPQGHY--FASSSHDRTARIW 490 (656)
Q Consensus 420 h~~~V~~l~~spd~-~~L~s~s~Dg~I~lwd~~~~~~--~~----~~~~h~~~V~~l~~sp~~~~--l~sgs~Dg~i~lw 490 (656)
-..+|.|+.|+|.. .+++.|+.+|+|.+||++.+.. .. ....|..+++.+.|..+..- |++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 45789999999965 4677888999999999987655 22 22358899999999875544 9999999999999
Q ss_pred ECCCCce-eE-----Eec------CCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCCC---e-----eEEEEecCCCC
Q 006220 491 SMDRIQP-LR-----IMA------GHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSSG---E-----CVRIFIGHRSM 549 (656)
Q Consensus 491 d~~~~~~-~~-----~~~------~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~---~-----~~~~~~~h~~~ 549 (656)
+++.... .. ... .....+++++|.+ +.+.+++|+.+|.|.--+.... . .+..+..|.++
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 9875332 11 111 1234588999997 5567899999999988443322 1 23356678899
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCC-CCeeeEeeeCCCccEEEEEEcCC-CCEEEEEECCCcEEEEeCCCCCce
Q 006220 550 ILSLAMSPDGRYMASGDEDGTIMMWDLA-SGRCVTPLMGHTSCVWTLAYSCE-GSLLASGSADCTVKLWDVTTSTKV 624 (656)
Q Consensus 550 i~~l~~sp~g~~L~s~~~dg~I~iwD~~-~~~~~~~~~~h~~~V~~l~~s~~-~~~l~sgs~Dg~I~iWd~~~~~~~ 624 (656)
|+++.++|=+..++..+.|.+++||... ...++..+..+...|++++|||- ...++++..||.|.|||+......
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~ 477 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEE 477 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccC
Confidence 9999999977655554459999999988 66777777788888999999995 467888889999999999775543
No 202
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=2.9e-15 Score=146.73 Aligned_cols=194 Identities=21% Similarity=0.315 Sum_probs=157.3
Q ss_pred CEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEec--CCCEEEEEECCCcEEEEECCCCcee--EEecCCC-CCe
Q 006220 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP--QGHYFASSSHDRTARIWSMDRIQPL--RIMAGHL-SDV 508 (656)
Q Consensus 434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~sgs~Dg~i~lwd~~~~~~~--~~~~~~~-~~V 508 (656)
..++++...|+|++||..+++.+..++++...+..+.|.. ..+.+.+|+.||+|++||++..... ..+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 4578888899999999999999999999999999999987 5778999999999999999875443 3444554 466
Q ss_pred eEEEEcCCCCEEEEEE----CCCcEEEEeCCCCee-EEEE-ecCCCCeEEEEEcCC-CCEEEEEECCCcEEEEeCCCCe-
Q 006220 509 DCVRWHINCNYIATGS----SDKTVRLWDVSSGEC-VRIF-IGHRSMILSLAMSPD-GRYMASGDEDGTIMMWDLASGR- 580 (656)
Q Consensus 509 ~~v~~~p~~~~l~tgs----~dg~V~iwd~~~~~~-~~~~-~~h~~~i~~l~~sp~-g~~L~s~~~dg~I~iwD~~~~~- 580 (656)
.|++.+-+++.+++|+ .+-.|.+||+|..+. ++.+ ..|...|+++.|+|. .++|++|+.||.|.+||+....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 7777777888999886 467899999998766 5544 579999999999995 5799999999999999996542
Q ss_pred --eeEeeeCCCccEEEEEEcCCC-CEEEEEECCCcEEEEeCCCCCceeec
Q 006220 581 --CVTPLMGHTSCVWTLAYSCEG-SLLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 581 --~~~~~~~h~~~V~~l~~s~~~-~~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
.+.....|...|.++.|..++ +.|.+-+..++..+|++..+......
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~ 250 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL 250 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc
Confidence 222233567789999998876 45888889999999999988755443
No 203
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=3e-14 Score=140.47 Aligned_cols=270 Identities=19% Similarity=0.246 Sum_probs=183.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccC
Q 006220 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL 432 (656)
Q Consensus 353 ~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 432 (656)
.+.-++|++.-..+|++..|-.|+||+-... . ....-......|+|++|-|.
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~ksst-~---------------------------pt~Lks~sQrnvtclawRPl 151 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSST-C---------------------------PTKLKSVSQRNVTCLAWRPL 151 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCCC-C---------------------------CceecchhhcceeEEEeccC
Confidence 4677899998778899999999999996531 0 11111223467999999997
Q ss_pred CC-EEEEEeCCCeEEEEeccCCc--------------eeEEeeCCCccEEEEEEecCCCEEEEEE-CCCcEEEEECCCCc
Q 006220 433 GD-FILSSSADTTIRLWSTKLNA--------------NLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQ 496 (656)
Q Consensus 433 ~~-~L~s~s~Dg~I~lwd~~~~~--------------~~~~~~~h~~~V~~l~~sp~~~~l~sgs-~Dg~i~lwd~~~~~ 496 (656)
+. .|+.|+.. -|.+|..+... .+...++| .+|++++|.+||..+++++ .|..|.+||.+++.
T Consensus 152 saselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~ 229 (445)
T KOG2139|consen 152 SASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ 229 (445)
T ss_pred Ccceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCC
Confidence 64 56666665 59999865211 12334556 6899999999999999998 56789999999988
Q ss_pred eeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeC-CCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDV-SSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575 (656)
Q Consensus 497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~-~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD 575 (656)
.+.......+.++-+.|+|++.+|++++-|+..++|+. ++..+.+-.. -.+.|...+|+|+|++|.-+.. |.-++|.
T Consensus 230 ~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~s-gsp~lys 307 (445)
T KOG2139|consen 230 KIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACS-GSPRLYS 307 (445)
T ss_pred cccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEc-CCceEEE
Confidence 77766556678999999999999999999999999954 4444444443 3458999999999997665443 3344554
Q ss_pred CCCC---------------eeeEee------eC---CCccEEEEEEcCCCCEEEEEECCC--------cEEEEeCCCCCc
Q 006220 576 LASG---------------RCVTPL------MG---HTSCVWTLAYSCEGSLLASGSADC--------TVKLWDVTTSTK 623 (656)
Q Consensus 576 ~~~~---------------~~~~~~------~~---h~~~V~~l~~s~~~~~l~sgs~Dg--------~I~iWd~~~~~~ 623 (656)
+... ..+..+ .+ -.+.+.+++|.|.|.+||+.-..+ .|.+||......
T Consensus 308 l~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~ 387 (445)
T KOG2139|consen 308 LTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPP 387 (445)
T ss_pred EeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCc
Confidence 4210 011111 11 136788999999999999876443 377788766544
Q ss_pred eeecc--cccCCccccccccccC-CCCCeEEEEEc
Q 006220 624 VLKTE--EKSGTNRLRSLKTLPT-KSTPVYSLQVL 655 (656)
Q Consensus 624 ~~~~~--~~~~~~~~~~l~~~p~-~~~pv~sv~Ft 655 (656)
..-.. ...+. .+..+.+.|. +..++.+|.++
T Consensus 388 vels~cg~i~ge-~P~~IsF~pl~n~g~lLsiaWs 421 (445)
T KOG2139|consen 388 VELSYCGMIGGE-YPAYISFGPLKNEGRLLSIAWS 421 (445)
T ss_pred eEEEecccccCC-CCceEEeeecccCCcEEEEEec
Confidence 33221 11111 1334444333 45667777765
No 204
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.4e-15 Score=156.48 Aligned_cols=213 Identities=23% Similarity=0.365 Sum_probs=166.0
Q ss_pred EEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEe-eCCCccEEEEEEec--CCCEEEEEECCCcEEEEE
Q 006220 415 TLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY-KGHNYPVWDVQFNP--QGHYFASSSHDRTARIWS 491 (656)
Q Consensus 415 ~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~-~~h~~~V~~l~~sp--~~~~l~sgs~Dg~i~lwd 491 (656)
..+.||+|.|.|+.|+.+|.+|++||.|-.+.|||.-..+.+..+ .+|...|.++.|-| +...+++|+.|..|+++|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 457899999999999999999999999999999999877777665 57999999999999 567899999999999999
Q ss_pred CCC----------CceeEEecCCCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCeeEE----------EEecCCCCe
Q 006220 492 MDR----------IQPLRIMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVR----------IFIGHRSMI 550 (656)
Q Consensus 492 ~~~----------~~~~~~~~~~~~~V~~v~~~p~~-~~l~tgs~dg~V~iwd~~~~~~~~----------~~~~h~~~i 550 (656)
+.. ..+.+.+..|...|..++-.|++ +.+.+++.||+|+-+|++...... .+...--..
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL 203 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence 984 34566777899999999999988 889999999999999998632111 111122346
Q ss_pred EEEEEcCC-CCEEEEEECCCcEEEEeCCC--------C----------eeeEeee-CCC-----------ccEEEEEEcC
Q 006220 551 LSLAMSPD-GRYMASGDEDGTIMMWDLAS--------G----------RCVTPLM-GHT-----------SCVWTLAYSC 599 (656)
Q Consensus 551 ~~l~~sp~-g~~L~s~~~dg~I~iwD~~~--------~----------~~~~~~~-~h~-----------~~V~~l~~s~ 599 (656)
.|+.++|. ..+|++|+.|-..++||.+. + .++..+. +|- ..++-+.|+|
T Consensus 204 k~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnp 283 (758)
T KOG1310|consen 204 KCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNP 283 (758)
T ss_pred eeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECC
Confidence 78999995 46899999999999999431 1 1222221 221 1256788999
Q ss_pred CCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220 600 EGSLLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 600 ~~~~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
+|.-|...-....|+++|+...+.....
T Consensus 284 NGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 284 NGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred CCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 9986666555568999999987765543
No 205
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.65 E-value=5.2e-15 Score=152.41 Aligned_cols=193 Identities=21% Similarity=0.332 Sum_probs=152.4
Q ss_pred cCCCEEEEEeCCCeEEEEeccCCceeEEee----CCCccEEEEEEec-CCCEEEEEECCCcEEEEECCCC----------
Q 006220 431 PLGDFILSSSADTTIRLWSTKLNANLVCYK----GHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRI---------- 495 (656)
Q Consensus 431 pd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~----~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~lwd~~~~---------- 495 (656)
|.+--|+.|-.-|.|.+.|....+....+. -....|+|+.|-| +...|+++-.+|.+++||....
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 455567888888899998876532221111 1246799999999 4556777889999999976310
Q ss_pred ------------------ceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcC
Q 006220 496 ------------------QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP 557 (656)
Q Consensus 496 ------------------~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp 557 (656)
.|+..+.--.+.|+.++|+|+|++||+.+.||.+||||..+.+.+..++..-+...|++|||
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP 342 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP 342 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC
Confidence 12222222335788999999999999999999999999999888877777778899999999
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcC-----------------------------------CC-
Q 006220 558 DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC-----------------------------------EG- 601 (656)
Q Consensus 558 ~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~-----------------------------------~~- 601 (656)
||+||++|++|.-|.||.+..++.+..-++|.+.|..++|.| ++
T Consensus 343 DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~ 422 (636)
T KOG2394|consen 343 DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGC 422 (636)
T ss_pred CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCC
Confidence 999999999999999999999999999999999999999983 01
Q ss_pred ------------CEEEEEECCCcEEEEeCCCCCc
Q 006220 602 ------------SLLASGSADCTVKLWDVTTSTK 623 (656)
Q Consensus 602 ------------~~l~sgs~Dg~I~iWd~~~~~~ 623 (656)
-.+.+.+.|-.+.+||+.....
T Consensus 423 ~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L 456 (636)
T KOG2394|consen 423 PLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL 456 (636)
T ss_pred cccccccccceEEEeecccccceEEEEecchhhc
Confidence 1577888999999999976443
No 206
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.65 E-value=6.3e-15 Score=154.62 Aligned_cols=247 Identities=20% Similarity=0.339 Sum_probs=176.3
Q ss_pred HHHhccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccc--CCCCCCCCCCc
Q 006220 325 LEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSG--LQGENDTTPRE 402 (656)
Q Consensus 325 ~~~~~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~--~~~~~~~~~~~ 402 (656)
+....+|+.+++.+-.+ .+.++.+|.+.|+|++||.||+.+|+|+.|..|.||+-.-.+....+.. .+.- ...+..
T Consensus 28 ~lAAg~rlliyD~ndG~-llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCM-sFNP~~ 105 (1081)
T KOG1538|consen 28 ILAAGSRLLVYDTSDGT-LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCM-SFNPIT 105 (1081)
T ss_pred EEecCCEEEEEeCCCcc-cccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEe-ecCchH
Confidence 33445677777665443 3568899999999999999999999999999999998654332221110 0000 000000
Q ss_pred cc--------cCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEee---CCCccEEEEEE
Q 006220 403 DI--------IGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK---GHNYPVWDVQF 471 (656)
Q Consensus 403 ~~--------~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~---~h~~~V~~l~~ 471 (656)
.. ++.-........-...+..|.+++|..||++|+.|-.+|+|.+-+-. ++....+. |.+++||+++|
T Consensus 106 h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~ 184 (1081)
T KOG1538|consen 106 HQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICW 184 (1081)
T ss_pred HHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEe
Confidence 00 00000000011111234678899999999999999999999998655 44333332 47889999999
Q ss_pred ecC-----CCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecC
Q 006220 472 NPQ-----GHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH 546 (656)
Q Consensus 472 sp~-----~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h 546 (656)
+|. ...+++..+..++.++.+.. +.+..-..-.-...|+.+.+||.|++.|+.|+.+.+|- +.|-.+.+....
T Consensus 185 ~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~ 262 (1081)
T KOG1538|consen 185 NPSSGEGRNDILAVADWGQTLSFYQLSG-KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQ 262 (1081)
T ss_pred cCCCCCCccceEEEEeccceeEEEEecc-eeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeecccc
Confidence 995 35688888999999998764 33332233334567999999999999999999999996 667777777777
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220 547 RSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (656)
Q Consensus 547 ~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~ 576 (656)
..+|..++..|++++++.|+.||+|..|++
T Consensus 263 D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 263 DSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred ceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 889999999999999999999999999986
No 207
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.63 E-value=4.6e-16 Score=157.60 Aligned_cols=201 Identities=17% Similarity=0.233 Sum_probs=178.0
Q ss_pred CEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec
Q 006220 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA 502 (656)
Q Consensus 423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~ 502 (656)
.-+.+.++.+|++++.|+..|.|-.+|+.++.....+. -...|.++.|-.+..+||++ ....++|||-. +..+..+.
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~-GtElHClk 207 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDNN-GTELHCLK 207 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEecCC-CcEEeehh
Confidence 34789999999999999999999999999988777665 35578999999888777776 55789999965 45566666
Q ss_pred CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeee
Q 006220 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582 (656)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~ 582 (656)
.| ..|..+.|-|..-+|++++..|.++.-|+.+|+.+..+..-.+.+..|+-+|-+..+-+|...|+|.+|.-.+..++
T Consensus 208 ~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePL 286 (545)
T KOG1272|consen 208 RH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPL 286 (545)
T ss_pred hc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchH
Confidence 55 67999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred EeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220 583 TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 583 ~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
..+..|.++|.++++.++|.+++|.|.|..|+|||++.-......
T Consensus 287 vKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~ 331 (545)
T KOG1272|consen 287 VKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTY 331 (545)
T ss_pred HHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccccee
Confidence 999999999999999999999999999999999999987655443
No 208
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=3e-15 Score=152.61 Aligned_cols=279 Identities=22% Similarity=0.358 Sum_probs=204.2
Q ss_pred EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCC----CC----------------CCcccc
Q 006220 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGEND----TT----------------PREDII 405 (656)
Q Consensus 346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~----~~----------------~~~~~~ 405 (656)
.+..|.+.|+.+.|+..|..|++|+.|..|.+||+............-..+. .. .....+
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 5678899999999999999999999999999999986543322111000000 00 000111
Q ss_pred CCCCCceeeEEeecCccCEEEEEEccCCC-EEEEEeCCCeEEEEeccCCceeE---EeeCCCc---cEEEEEEecCC-CE
Q 006220 406 GPNGRKRSYTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLV---CYKGHNY---PVWDVQFNPQG-HY 477 (656)
Q Consensus 406 ~~~~~~~~~~~l~~h~~~V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~~~---~~~~h~~---~V~~l~~sp~~-~~ 477 (656)
...+.......+..|.++|.-++.-|+.. -|++++.|+.+.-+|++.+.... +-..+.. ....++..|.. +.
T Consensus 217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~ 296 (559)
T KOG1334|consen 217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE 296 (559)
T ss_pred ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence 11222233455778999999999999876 58899999999999998765432 2222333 46788888854 48
Q ss_pred EEEEECCCcEEEEECCCCce------eEEec------CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC--C------
Q 006220 478 FASSSHDRTARIWSMDRIQP------LRIMA------GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS--G------ 537 (656)
Q Consensus 478 l~sgs~Dg~i~lwd~~~~~~------~~~~~------~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~--~------ 537 (656)
|++|+.|..+++||.+.... +..+. ...-.|+|++|+.++.-|.++-.|-.|+++.-.- |
T Consensus 297 faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~ 376 (559)
T KOG1334|consen 297 FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPS 376 (559)
T ss_pred cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCC
Confidence 99999999999999875322 22222 2234589999998888888888899999995432 2
Q ss_pred ----eeE-EEEecCCC--CeEEEE-EcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEEC
Q 006220 538 ----ECV-RIFIGHRS--MILSLA-MSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA 609 (656)
Q Consensus 538 ----~~~-~~~~~h~~--~i~~l~-~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~ 609 (656)
..+ +.++||.. .|..+- |-|...|+++|+.-|.|.||+-.+++.+.-+.+...-|+||.-+|.-.+||++|-
T Consensus 377 s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGi 456 (559)
T KOG1334|consen 377 SPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGI 456 (559)
T ss_pred cchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCC
Confidence 222 23788875 355565 4678899999999999999999999999999887779999999999999999999
Q ss_pred CCcEEEEeCCCCCce
Q 006220 610 DCTVKLWDVTTSTKV 624 (656)
Q Consensus 610 Dg~I~iWd~~~~~~~ 624 (656)
|..|+||--.+.+..
T Consensus 457 d~DVKIWTP~~~er~ 471 (559)
T KOG1334|consen 457 DHDVKIWTPLTAERA 471 (559)
T ss_pred ccceeeecCCccccc
Confidence 999999987555443
No 209
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.62 E-value=1.1e-13 Score=154.81 Aligned_cols=262 Identities=18% Similarity=0.254 Sum_probs=186.1
Q ss_pred eeEEEEeeCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecC
Q 006220 342 VSFYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH 420 (656)
Q Consensus 342 ~~~~~~~~~~~~V~~l~fs~d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h 420 (656)
+..-.++.|...|..++.++. +.++++|+.||+|+||++...... .+..+...++..-
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~---------------------~~s~rS~ltys~~ 1097 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE---------------------GGSARSELTYSPE 1097 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC---------------------cceeeeeEEEecc
Confidence 334567788888889888765 599999999999999998752111 1112333444446
Q ss_pred ccCEEEEEEccCCCEEEEEeCCCeEEEEeccCC--ce-----eEEeeCC-CccEEEE-EEec-CC-CEEEEEECCCcEEE
Q 006220 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLN--AN-----LVCYKGH-NYPVWDV-QFNP-QG-HYFASSSHDRTARI 489 (656)
Q Consensus 421 ~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~--~~-----~~~~~~h-~~~V~~l-~~sp-~~-~~l~sgs~Dg~i~l 489 (656)
.+++.++...+.+..++.++.||.|++.+++.. .. ......+ .+.+.++ +|.. .+ ..++.+..-+.|..
T Consensus 1098 ~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~ 1177 (1431)
T KOG1240|consen 1098 GSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVS 1177 (1431)
T ss_pred CCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEE
Confidence 788999999999999999999999999998752 11 1111112 2223332 3332 23 36888888899999
Q ss_pred EECCCCceeEEec--CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe-cCCCCeEEEEEcCCC---CEEE
Q 006220 490 WSMDRIQPLRIMA--GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPDG---RYMA 563 (656)
Q Consensus 490 wd~~~~~~~~~~~--~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~-~h~~~i~~l~~sp~g---~~L~ 563 (656)
||++.......+. ...+.|++++.+|.++++++|+..|.+.+||+|=+.++..+. ++..+|..+..+|-. .+.+
T Consensus 1178 ~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~v 1257 (1431)
T KOG1240|consen 1178 WDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSV 1257 (1431)
T ss_pred ecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEE
Confidence 9998765544333 344789999999999999999999999999999888887664 345788888877732 4555
Q ss_pred EEE--CCCcEEEEeCCCCeeeEeeeCC-------------------CccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220 564 SGD--EDGTIMMWDLASGRCVTPLMGH-------------------TSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 564 s~~--~dg~I~iwD~~~~~~~~~~~~h-------------------~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
+++ ..+.|.+|++.+|.+-..+... .-......+...+..+.+|+.|+.|+.||.....
T Consensus 1258 s~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1258 SAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred EecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 544 5788999999988766555322 1112223344456689999999999999998766
Q ss_pred ce
Q 006220 623 KV 624 (656)
Q Consensus 623 ~~ 624 (656)
..
T Consensus 1338 ~s 1339 (1431)
T KOG1240|consen 1338 IS 1339 (1431)
T ss_pred cc
Confidence 54
No 210
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=1.6e-13 Score=149.29 Aligned_cols=220 Identities=15% Similarity=0.109 Sum_probs=153.0
Q ss_pred EeeCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220 347 FINTHNGLNCASISQDGSLVAGGFS---DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (656)
Q Consensus 347 ~~~~~~~V~~l~fs~dg~~La~g~~---dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 423 (656)
+..+...+.+.+|||||+.||..+. +..|.+|++.+... .... ...+.
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--------------------------~~l~---~~~~~ 244 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--------------------------RQVA---SFPRH 244 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--------------------------EEcc---CCCCC
Confidence 3445567999999999999987542 35688888764211 1111 12233
Q ss_pred EEEEEEccCCCEEEEE-eCCC--eEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECC-Cc--EEEEECCCCce
Q 006220 424 VYSASFSPLGDFILSS-SADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD-RT--ARIWSMDRIQP 497 (656)
Q Consensus 424 V~~l~~spd~~~L~s~-s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D-g~--i~lwd~~~~~~ 497 (656)
+..+.|+|||+.|+.. +.+| .|.+||+.++..... ..+...+....|+|+|+.|+.++.+ +. |+++|+.++..
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP 323 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence 4467999999988754 4444 588999987765443 3344567889999999998877754 44 55557766654
Q ss_pred eEEecCCCCCeeEEEEcCCCCEEEEEECC---CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCc---E
Q 006220 498 LRIMAGHLSDVDCVRWHINCNYIATGSSD---KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT---I 571 (656)
Q Consensus 498 ~~~~~~~~~~V~~v~~~p~~~~l~tgs~d---g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~---I 571 (656)
.+ +..+.....+..|+|+|++|+..+.+ ..|.+||+.++.... +... .......|+|||++|+.++.++. +
T Consensus 324 ~~-lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l 400 (429)
T PRK03629 324 QR-ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDT-FLDETPSIAPNGTMVIYSSSQGMGSVL 400 (429)
T ss_pred EE-eecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCC-CCCCCceECCCCCEEEEEEcCCCceEE
Confidence 33 33344456678999999999876643 358899998886543 3322 23446789999999999887764 6
Q ss_pred EEEeCCCCeeeEeeeCCCccEEEEEEcCC
Q 006220 572 MMWDLASGRCVTPLMGHTSCVWTLAYSCE 600 (656)
Q Consensus 572 ~iwD~~~~~~~~~~~~h~~~V~~l~~s~~ 600 (656)
.++++ +|.....+.+|.+.+...+|+|-
T Consensus 401 ~~~~~-~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 401 NLVST-DGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred EEEEC-CCCCeEECccCCCCcCCcccCCC
Confidence 77777 56667778888888999999873
No 211
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.61 E-value=4.5e-13 Score=141.11 Aligned_cols=228 Identities=14% Similarity=0.221 Sum_probs=153.3
Q ss_pred EEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEe-CCCeE
Q 006220 367 AGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS-ADTTI 445 (656)
Q Consensus 367 a~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s-~Dg~I 445 (656)
++...++.|++|++...+. ......+ .+.+....++++|++++|++++ .++.|
T Consensus 6 ~~~~~~~~I~~~~~~~~g~-------------------------l~~~~~~-~~~~~~~~l~~spd~~~lyv~~~~~~~i 59 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGA-------------------------LTLLQVV-DVPGQVQPMVISPDKRHLYVGVRPEFRV 59 (330)
T ss_pred EEcCCCCCEEEEEECCCCc-------------------------eeeeeEE-ecCCCCccEEECCCCCEEEEEECCCCcE
Confidence 3445789999999863111 1122222 2335567889999999887664 57889
Q ss_pred EEEeccC-Cce--eEEeeCCCccEEEEEEecCCCEEEEEE-CCCcEEEEECCCC----ceeEEecCCCCCeeEEEEcCCC
Q 006220 446 RLWSTKL-NAN--LVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRI----QPLRIMAGHLSDVDCVRWHINC 517 (656)
Q Consensus 446 ~lwd~~~-~~~--~~~~~~h~~~V~~l~~sp~~~~l~sgs-~Dg~i~lwd~~~~----~~~~~~~~~~~~V~~v~~~p~~ 517 (656)
.+|+++. +.. +.... .......++|+|+++++++++ .++.+.+|++++. ..+..+. +.....+++++|++
T Consensus 60 ~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g 137 (330)
T PRK11028 60 LSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDN 137 (330)
T ss_pred EEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCC
Confidence 9999973 322 12222 233456899999999988887 4889999999742 2233332 23456788999999
Q ss_pred CEEEEEE-CCCcEEEEeCCCCeeEE-----EEe-cCCCCeEEEEEcCCCCEEEEEEC-CCcEEEEeCCC--C--eeeEee
Q 006220 518 NYIATGS-SDKTVRLWDVSSGECVR-----IFI-GHRSMILSLAMSPDGRYMASGDE-DGTIMMWDLAS--G--RCVTPL 585 (656)
Q Consensus 518 ~~l~tgs-~dg~V~iwd~~~~~~~~-----~~~-~h~~~i~~l~~sp~g~~L~s~~~-dg~I~iwD~~~--~--~~~~~~ 585 (656)
+++++++ .++.|.+||+.+...+. ... ........++|+|+|++++++.. ++.|.+||+.. + +.+..+
T Consensus 138 ~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~ 217 (330)
T PRK11028 138 RTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTL 217 (330)
T ss_pred CEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEE
Confidence 9987655 56899999997633221 011 11234568999999999988876 89999999973 3 233333
Q ss_pred eCC------CccEEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCC
Q 006220 586 MGH------TSCVWTLAYSCEGSLLASGS-ADCTVKLWDVTTST 622 (656)
Q Consensus 586 ~~h------~~~V~~l~~s~~~~~l~sgs-~Dg~I~iWd~~~~~ 622 (656)
..+ ......+.++|++++++++. .++.|.+|++....
T Consensus 218 ~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~ 261 (330)
T PRK11028 218 DMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDG 261 (330)
T ss_pred ecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCC
Confidence 221 11233688999999998885 47899999996543
No 212
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.61 E-value=9.2e-15 Score=150.28 Aligned_cols=183 Identities=17% Similarity=0.247 Sum_probs=150.3
Q ss_pred eeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEE
Q 006220 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSA 427 (656)
Q Consensus 348 ~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 427 (656)
-.|.+.|.|-.|+|||.-|++.+.||.|++|+-... ...++.....+|+|+
T Consensus 101 ~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM-----------------------------LRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 101 SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM-----------------------------LRSTVVQNEESIRCA 151 (737)
T ss_pred hhhhhhhhhcccCCCCceeeeecCCceEEEEeccch-----------------------------HHHHHhhcCceeEEE
Confidence 456778999999999999999999999999996531 112233456789999
Q ss_pred EEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCC
Q 006220 428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSD 507 (656)
Q Consensus 428 ~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~ 507 (656)
+|.|+++.++.|.. +.+.+=.+.....+...+.|.+-|.++.|++..+.+++|+.|-..++||-. +.++..-..|.-+
T Consensus 152 ~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ 229 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYA 229 (737)
T ss_pred EECCCCCceEEecC-CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccc
Confidence 99999988777655 468888888788888899999999999999999999999999999999965 4567777789999
Q ss_pred eeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 006220 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW 574 (656)
Q Consensus 508 V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iw 574 (656)
|++++|+|+ ..++.||. +++|+ -....+.|..++||+||..+++|+..|.+.+=
T Consensus 230 ITSva~npd-~~~~v~S~-nt~R~-----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 230 ITSVAFNPE-KDYLLWSY-NTARF-----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred eeeeeeccc-cceeeeee-eeeee-----------cCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 999999999 66666654 34542 22345789999999999999999999887653
No 213
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=2.1e-13 Score=148.70 Aligned_cols=236 Identities=23% Similarity=0.363 Sum_probs=177.4
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCC
Q 006220 355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD 434 (656)
Q Consensus 355 ~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~ 434 (656)
....||+|+++++.. .+..|+||...+ +...+.+.+|..++.++.+.|...
T Consensus 20 ~~avfSnD~k~l~~~-~~~~V~VyS~~T----------------------------g~~i~~l~~~~a~l~s~~~~~~~~ 70 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLC-TGNFVKVYSTAT----------------------------GECITSLEDHTAPLTSVIVLPSSE 70 (792)
T ss_pred cccccccCCcEEEEe-eCCEEEEEecch----------------------------HhhhhhcccccCccceeeecCCCc
Confidence 345699999999877 567899999876 334557889999999999988654
Q ss_pred ---EEEEEeCCCeEEEEeccCCceeEEeeCCCccE---------------------------------------------
Q 006220 435 ---FILSSSADTTIRLWSTKLNANLVCYKGHNYPV--------------------------------------------- 466 (656)
Q Consensus 435 ---~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V--------------------------------------------- 466 (656)
++++++.||+|++||...+..+.++..+. ++
T Consensus 71 ~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~ 149 (792)
T KOG1963|consen 71 NANYLIVCSLDGTIRVWDWSDGELLKTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATF 149 (792)
T ss_pred cceEEEEEecCccEEEecCCCcEEEEEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeec
Confidence 67899999999999988766655443211 11
Q ss_pred --------------EEEEEecCCCEEEEEECCCcEEEEECCCCceeE----EecCCCCCeeEEEEcCCCCEEEEEECCCc
Q 006220 467 --------------WDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR----IMAGHLSDVDCVRWHINCNYIATGSSDKT 528 (656)
Q Consensus 467 --------------~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~----~~~~~~~~V~~v~~~p~~~~l~tgs~dg~ 528 (656)
.++.+++.|.+... ..+..+.+|......... .-..|.-.++|+++||+++++++|..||.
T Consensus 150 ~~~~~d~~~~~~~~~~I~~~~~ge~~~i-~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGr 228 (792)
T KOG1963|consen 150 DSAKGDFLKEHQEPKSIVDNNSGEFKGI-VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGR 228 (792)
T ss_pred cccchhhhhhhcCCccEEEcCCceEEEE-EEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCc
Confidence 12333333333222 234556777766533111 11146666899999999999999999999
Q ss_pred EEEEeCCC----CeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEE
Q 006220 529 VRLWDVSS----GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLL 604 (656)
Q Consensus 529 V~iwd~~~----~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l 604 (656)
|.+|.--. ......+.-|...|++++|+++|.+|++||..|.+.+|.+.+++ -+-+..-.++|..+.+|||+.+.
T Consensus 229 I~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~ 307 (792)
T KOG1963|consen 229 ILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLY 307 (792)
T ss_pred EEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeE
Confidence 99996432 12345677899999999999999999999999999999999988 33344556899999999999999
Q ss_pred EEEECCCcEEEEeCCCCC
Q 006220 605 ASGSADCTVKLWDVTTST 622 (656)
Q Consensus 605 ~sgs~Dg~I~iWd~~~~~ 622 (656)
+....|+.|.+-...+..
T Consensus 308 sl~~~DNqI~li~~~dl~ 325 (792)
T KOG1963|consen 308 SLVLEDNQIHLIKASDLE 325 (792)
T ss_pred EEEecCceEEEEeccchh
Confidence 999999999999885543
No 214
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=7.4e-13 Score=144.05 Aligned_cols=199 Identities=17% Similarity=0.156 Sum_probs=140.3
Q ss_pred eecCccCEEEEEEccCCCEEEEEe---CCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEE-ECCC--cEEEE
Q 006220 417 YQGHSGPVYSASFSPLGDFILSSS---ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHDR--TARIW 490 (656)
Q Consensus 417 l~~h~~~V~~l~~spd~~~L~s~s---~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sg-s~Dg--~i~lw 490 (656)
+..+...+.+.+|||||+.|+..+ .+..|.+|++.+++.... ......+....|+|+|..++.. +.+| .|++|
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~ 272 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 272 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEE
Confidence 345667899999999999888654 345799999987754332 2223334568999999988765 4444 58899
Q ss_pred ECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECC-C--cEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 006220 491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD-K--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (656)
Q Consensus 491 d~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d-g--~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~ 567 (656)
|+++++..+... +...+....|+|+|+.|+.++.+ + .|+++|+.++...+ +..+.....+..|+|||++|+..+.
T Consensus 273 d~~tg~~~~lt~-~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~-lt~~~~~~~~~~~SpDG~~Ia~~~~ 350 (429)
T PRK03629 273 DLASGQIRQVTD-GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQDADVSSDGKFMVMVSS 350 (429)
T ss_pred ECCCCCEEEccC-CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEEc
Confidence 998876655443 44567889999999999877654 4 45555777665543 3444455677899999999887654
Q ss_pred C---CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCc---EEEEeCCC
Q 006220 568 D---GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCT---VKLWDVTT 620 (656)
Q Consensus 568 d---g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~---I~iWd~~~ 620 (656)
+ ..|.+||+.++... .+... ....+..|+|||++|+.++.++. +.+|++..
T Consensus 351 ~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G 407 (429)
T PRK03629 351 NGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG 407 (429)
T ss_pred cCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 3 35889999887643 33321 22346789999999999998865 66777744
No 215
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=1.1e-13 Score=138.15 Aligned_cols=207 Identities=17% Similarity=0.251 Sum_probs=166.1
Q ss_pred eecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCc----eeEEeeCCCccEEEEEEecCC-CEEEEEECC--CcEEE
Q 006220 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA----NLVCYKGHNYPVWDVQFNPQG-HYFASSSHD--RTARI 489 (656)
Q Consensus 417 l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~----~~~~~~~h~~~V~~l~~sp~~-~~l~sgs~D--g~i~l 489 (656)
....+++|.++... +..|++|-.+|.+.+|....+. .+..+..+ .++..+.-++.. ..+++||.. ..+.+
T Consensus 101 ~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lki 177 (412)
T KOG3881|consen 101 VSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKI 177 (412)
T ss_pred cccccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceee
Confidence 34456777777765 4678899999999999988443 23333333 456667767644 456668888 88999
Q ss_pred EECCCCceeEEecCCC---------CCeeEEEEcCC--CCEEEEEECCCcEEEEeCCCC-eeEEEEecCCCCeEEEEEcC
Q 006220 490 WSMDRIQPLRIMAGHL---------SDVDCVRWHIN--CNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSP 557 (656)
Q Consensus 490 wd~~~~~~~~~~~~~~---------~~V~~v~~~p~--~~~l~tgs~dg~V~iwd~~~~-~~~~~~~~h~~~i~~l~~sp 557 (656)
||+.+.+++..-..-. -.++.+.|-+. ...|++++.-+.||+||.+.+ +++..|.-...+++++...|
T Consensus 178 wdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p 257 (412)
T KOG3881|consen 178 WDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP 257 (412)
T ss_pred eecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC
Confidence 9999875554433211 23577888876 789999999999999999976 57888887889999999999
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeeeEe-eeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceee
Q 006220 558 DGRYMASGDEDGTIMMWDLASGRCVTP-LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLK 626 (656)
Q Consensus 558 ~g~~L~s~~~dg~I~iwD~~~~~~~~~-~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~ 626 (656)
+|++|++|..-|.+..||++.++.+.. +.+..+.|+++..+|.+.+++++|-|..|||+|+.+...+..
T Consensus 258 ~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 258 SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred CCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence 999999999999999999999998877 788899999999999999999999999999999999655543
No 216
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.59 E-value=2e-14 Score=148.11 Aligned_cols=173 Identities=22% Similarity=0.390 Sum_probs=134.3
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCC-EEEEE
Q 006220 361 QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD-FILSS 439 (656)
Q Consensus 361 ~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~-~L~s~ 439 (656)
+++--|..|...|.|.+.|........ .+ .....-....|+|+.|-|.+. .++.+
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sk----------------lf--------ne~r~i~ktsvT~ikWvpg~~~~Fl~a 238 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSK----------------LF--------NEERLINKSSVTCIKWVPGSDSLFLVA 238 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHH----------------hh--------hhcccccccceEEEEEEeCCCceEEEE
Confidence 566778889999999988865310000 00 000001237899999999654 56677
Q ss_pred eCCCeEEEEeccC--------------Cc--------------eeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEE
Q 006220 440 SADTTIRLWSTKL--------------NA--------------NLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS 491 (656)
Q Consensus 440 s~Dg~I~lwd~~~--------------~~--------------~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd 491 (656)
-.+|.+.++|... +. .+..+.-....|..++|+|||.+||+.+.||.++|+|
T Consensus 239 ~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~ 318 (636)
T KOG2394|consen 239 HASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFD 318 (636)
T ss_pred EecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEee
Confidence 7889999997531 11 1111222235688899999999999999999999999
Q ss_pred CCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcC
Q 006220 492 MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP 557 (656)
Q Consensus 492 ~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp 557 (656)
.++.+.+..+....+...||+|+|||+||++|+.|.-|.+|.+..++.+..-.+|.++|+.++|.|
T Consensus 319 fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 319 FDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 999888888888888999999999999999999999999999999999999999999999999983
No 217
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.1e-13 Score=143.75 Aligned_cols=273 Identities=13% Similarity=0.167 Sum_probs=190.4
Q ss_pred eeCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCCcccccccCCCC------CCCCCCccccCCCCCceeeEEeecC
Q 006220 348 INTHNGLNCASISQDGSL-VAGGFSDSSLKVWDMAKLGQQAVSSGLQGE------NDTTPREDIIGPNGRKRSYTLYQGH 420 (656)
Q Consensus 348 ~~~~~~V~~l~fs~dg~~-La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~h 420 (656)
+.+...-+.|..||||+| +|+|...-.|++||+............... .+......++..+..........-|
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h 127 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH 127 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCee
Confidence 455666788999999998 567888999999999875433221100000 0000000011000000000000001
Q ss_pred -----ccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 006220 421 -----SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI 495 (656)
Q Consensus 421 -----~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~ 495 (656)
...-..++++.-+.-|++++....|+-+++..|.-+..+....++++++..++...+|++|+.+|.+-+||.+..
T Consensus 128 y~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k 207 (703)
T KOG2321|consen 128 YRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK 207 (703)
T ss_pred eeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhh
Confidence 112234455443333444455557999999999999888888899999999999999999999999999999877
Q ss_pred ceeEEec------CCCC-----CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe-cCCCCeEEEEEcCC--CCE
Q 006220 496 QPLRIMA------GHLS-----DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMSPD--GRY 561 (656)
Q Consensus 496 ~~~~~~~------~~~~-----~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~-~h~~~i~~l~~sp~--g~~ 561 (656)
..+..+. .|.+ .|+++.|+.+|-.+++|+++|.|.|||+++.+++..-. +..-+|..+.|.+. +..
T Consensus 208 srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~ 287 (703)
T KOG2321|consen 208 SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNK 287 (703)
T ss_pred hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCce
Confidence 6655443 2333 39999999999999999999999999999988876432 23458999999875 455
Q ss_pred EEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220 562 MASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 562 L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
+++.. ...++|||-.+|+....+.. +..+..+|+-|++.+++++-.++.+..|=+..-.
T Consensus 288 v~S~D-k~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 288 VVSMD-KRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred EEecc-hHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCcceeEEccccC
Confidence 66654 46899999999999888754 3458999999999999999999888887776543
No 218
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.58 E-value=2.3e-12 Score=127.99 Aligned_cols=199 Identities=15% Similarity=0.212 Sum_probs=154.4
Q ss_pred CccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeC---CCccEEEEEEecCCCEEEEEE--CCCcEEEEECCC
Q 006220 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG---HNYPVWDVQFNPQGHYFASSS--HDRTARIWSMDR 494 (656)
Q Consensus 420 h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~---h~~~V~~l~~sp~~~~l~sgs--~Dg~i~lwd~~~ 494 (656)
...+|.+|.++. +.|+++-.+. |+|||+++.+.+.++.. +...+..+++++.+.|++.-+ ..|.|.+||+.+
T Consensus 86 fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n 162 (391)
T KOG2110|consen 86 FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN 162 (391)
T ss_pred cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc
Confidence 346788898873 5666666654 99999999988877654 444566777777777887654 568999999999
Q ss_pred CceeEEecCCCCCeeEEEEcCCCCEEEEEECCCc-EEEEeCCCCeeEEEEecCC--CCeEEEEEcCCCCEEEEEECCCcE
Q 006220 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKT-VRLWDVSSGECVRIFIGHR--SMILSLAMSPDGRYMASGDEDGTI 571 (656)
Q Consensus 495 ~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~-V~iwd~~~~~~~~~~~~h~--~~i~~l~~sp~g~~L~s~~~dg~I 571 (656)
-+++..+..|.+.+.|++|+++|.+|||+|..|+ ||++.+.+|+.+..|+--. ..|.+++|+|++.+|++.++.++|
T Consensus 163 l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTV 242 (391)
T KOG2110|consen 163 LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETV 242 (391)
T ss_pred ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeE
Confidence 9999999999999999999999999999999987 8999999999998886432 368899999999999999999999
Q ss_pred EEEeCCCCe-------------------------------------eeEeeeCCCc---cEEEEEEcCCCCEEEEEECCC
Q 006220 572 MMWDLASGR-------------------------------------CVTPLMGHTS---CVWTLAYSCEGSLLASGSADC 611 (656)
Q Consensus 572 ~iwD~~~~~-------------------------------------~~~~~~~h~~---~V~~l~~s~~~~~l~sgs~Dg 611 (656)
+||.+.... .....+...+ .+..+.-.+...++..++.||
T Consensus 243 HiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG 322 (391)
T KOG2110|consen 243 HIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDG 322 (391)
T ss_pred EEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCC
Confidence 999875311 0000111111 222222234678899999999
Q ss_pred cEEEEeCCCC
Q 006220 612 TVKLWDVTTS 621 (656)
Q Consensus 612 ~I~iWd~~~~ 621 (656)
.++.|.+...
T Consensus 323 ~~y~y~l~~~ 332 (391)
T KOG2110|consen 323 HLYSYRLPPK 332 (391)
T ss_pred eEEEEEcCCC
Confidence 9999998763
No 219
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=1e-12 Score=143.69 Aligned_cols=203 Identities=13% Similarity=0.034 Sum_probs=146.2
Q ss_pred EEeecCccCEEEEEEccCCCEEEEEeC---CCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEE-EEECCCc--EE
Q 006220 415 TLYQGHSGPVYSASFSPLGDFILSSSA---DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA-SSSHDRT--AR 488 (656)
Q Consensus 415 ~~l~~h~~~V~~l~~spd~~~L~s~s~---Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-sgs~Dg~--i~ 488 (656)
..+..|...+.+.+|+|||+.|+..+. +..|.+||+.++... .+..+...+...+|+|+|..++ +.+.++. |+
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 273 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY 273 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence 445567889999999999998887763 468999999887653 3445566778899999998875 4555554 77
Q ss_pred EEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEEC-CC--cEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE
Q 006220 489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DK--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG 565 (656)
Q Consensus 489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg--~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~ 565 (656)
+||+.++... .+..+........|+|+|+.|+..+. +| .|++||+.++...+ +..+.+.+....|+|+|++|+..
T Consensus 274 ~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ia~~ 351 (435)
T PRK05137 274 TMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDLIAFT 351 (435)
T ss_pred EEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCcccCeEECCCCCEEEEE
Confidence 7788876554 45556666778999999999987764 33 68888987665544 33345567778999999999876
Q ss_pred ECC---CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECC------CcEEEEeCCCCC
Q 006220 566 DED---GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD------CTVKLWDVTTST 622 (656)
Q Consensus 566 ~~d---g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~D------g~I~iWd~~~~~ 622 (656)
+.+ ..|.+||+..+. ...+. ....+.+..|+|||+.|+..+.+ ..+.++|+..+.
T Consensus 352 ~~~~~~~~i~~~d~~~~~-~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 352 KQGGGQFSIGVMKPDGSG-ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred EcCCCceEEEEEECCCCc-eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 643 368889975543 33332 22346788999999988776543 257777876543
No 220
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=9.4e-13 Score=130.06 Aligned_cols=278 Identities=15% Similarity=0.200 Sum_probs=179.7
Q ss_pred HHHHhccceecCCCCCCceeEEEEeeCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCc
Q 006220 324 ILEDLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPRE 402 (656)
Q Consensus 324 ~~~~~~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~ 402 (656)
++....+.+++++.+....+.++ ......|+|++|-|. ++-|++|+. +.|.||..+.......
T Consensus 114 ava~nddvVriy~ksst~pt~Lk-s~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r-------------- 177 (445)
T KOG2139|consen 114 AVATNDDVVRIYDKSSTCPTKLK-SVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANR-------------- 177 (445)
T ss_pred hhhccCcEEEEeccCCCCCceec-chhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccccc--------------
Confidence 34456677888776653333222 233457999999997 556777755 5588999874211100
Q ss_pred cccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEeC-CCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEE
Q 006220 403 DIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSA-DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS 481 (656)
Q Consensus 403 ~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~-Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sg 481 (656)
.+.........+....|| .+|+++.|.+||..+++++. |..|.|||.+++.++....-..+.+.-+.|||+|.+|+.+
T Consensus 178 ~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA 256 (445)
T KOG2139|consen 178 NIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA 256 (445)
T ss_pred ccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence 000001112233344556 79999999999999998885 5789999999998876554456678899999999999999
Q ss_pred ECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC----Ce--------eEE---EE---
Q 006220 482 SHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS----GE--------CVR---IF--- 543 (656)
Q Consensus 482 s~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~----~~--------~~~---~~--- 543 (656)
+-|+..++|...............+.|...+|+|.|..|+..+. |.-++|.+.- +. .+. .+
T Consensus 257 t~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ 335 (445)
T KOG2139|consen 257 TCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEV 335 (445)
T ss_pred cccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhh
Confidence 99999999965443322222233458999999999998766543 3334444321 10 000 00
Q ss_pred ---ec---CCCCeEEEEEcCCCCEEEEEECCC--------cEEEEeCCCCeeeEeee-CC--CccEEEEEEcC---CCCE
Q 006220 544 ---IG---HRSMILSLAMSPDGRYMASGDEDG--------TIMMWDLASGRCVTPLM-GH--TSCVWTLAYSC---EGSL 603 (656)
Q Consensus 544 ---~~---h~~~i~~l~~sp~g~~L~s~~~dg--------~I~iwD~~~~~~~~~~~-~h--~~~V~~l~~s~---~~~~ 603 (656)
.+ ..+.+.+++|.|.|.+||+....+ .|.+||.+..-.+.-.. +- .....-++|+| ++.+
T Consensus 336 ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~l 415 (445)
T KOG2139|consen 336 TICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRL 415 (445)
T ss_pred hhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcE
Confidence 11 246789999999999999976543 47788876544333221 10 11234566665 5677
Q ss_pred EEEEECCCcEEEEeCC
Q 006220 604 LASGSADCTVKLWDVT 619 (656)
Q Consensus 604 l~sgs~Dg~I~iWd~~ 619 (656)
|..+=..|.|.-|++.
T Consensus 416 LsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 416 LSIAWSTGRIQRYPLT 431 (445)
T ss_pred EEEEeccCceEeeeeE
Confidence 7777778888877763
No 221
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=3.2e-13 Score=147.44 Aligned_cols=221 Identities=18% Similarity=0.121 Sum_probs=153.1
Q ss_pred EEEeeCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCc
Q 006220 345 YTFINTHNGLNCASISQDGSLVAGGFSD---SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS 421 (656)
Q Consensus 345 ~~~~~~~~~V~~l~fs~dg~~La~g~~d---g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~ 421 (656)
..+..+...+.+.+|+|||+.|+..+.+ ..|.+|++..... ..+..+.
T Consensus 197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-----------------------------~~l~~~~ 247 (433)
T PRK04922 197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-----------------------------ELVASFR 247 (433)
T ss_pred eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-----------------------------EEeccCC
Confidence 3455667789999999999999987643 4699999864211 1122233
Q ss_pred cCEEEEEEccCCCEEE-EEeCCC--eEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC-CCc--EEEEECCCC
Q 006220 422 GPVYSASFSPLGDFIL-SSSADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRT--ARIWSMDRI 495 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~-s~s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~-Dg~--i~lwd~~~~ 495 (656)
+...+.+|+|||+.|+ +.+.+| .|++||+.++.. ..+..+.......+|+|+|++++.++. +|. |+++++.++
T Consensus 248 g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g 326 (433)
T PRK04922 248 GINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG 326 (433)
T ss_pred CCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 4455789999999775 555555 599999987764 344445555567899999999887764 444 667777766
Q ss_pred ceeEEecCCCCCeeEEEEcCCCCEEEEEECCC---cEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC---C
Q 006220 496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSDK---TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED---G 569 (656)
Q Consensus 496 ~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg---~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d---g 569 (656)
+..+.. .+.......+|+|+|++|+..+.++ .|.+||+.+++... +. +........|+|||++|+..+.+ +
T Consensus 327 ~~~~lt-~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~ 403 (433)
T PRK04922 327 SAERLT-FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT-LT-PGSLDESPSFAPNGSMVLYATREGGRG 403 (433)
T ss_pred CeEEee-cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE-CC-CCCCCCCceECCCCCEEEEEEecCCce
Confidence 544433 2333455789999999998876443 69999998887653 33 33345567999999988776643 4
Q ss_pred cEEEEeCCCCeeeEeeeCCCccEEEEEEcC
Q 006220 570 TIMMWDLASGRCVTPLMGHTSCVWTLAYSC 599 (656)
Q Consensus 570 ~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~ 599 (656)
.|.++++. +.....+..+.+.+...+|+|
T Consensus 404 ~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 404 VLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred EEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 68888874 555566666666777788876
No 222
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=2.2e-13 Score=135.29 Aligned_cols=247 Identities=16% Similarity=0.215 Sum_probs=183.1
Q ss_pred EeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (656)
Q Consensus 347 ~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 426 (656)
-..|.+.|.|++|....++|.+|..+++|...|+.+.... .+.......+.|+.
T Consensus 101 ~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi--------------------------~V~~~~~~~~~VY~ 154 (609)
T KOG4227|consen 101 EHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSI--------------------------YVANENNNRGDVYH 154 (609)
T ss_pred cCccccceEEEEEccCCeeEecCCCcceeEeeecccceee--------------------------eeecccCcccceee
Confidence 3455678999999999999999999999999998752110 01111123469999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeccCCce---eEEeeCCCccEEEEEEecC-CCEEEEEECCCcEEEEECCCCce-eEEe
Q 006220 427 ASFSPLGDFILSSSADTTIRLWSTKLNAN---LVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTARIWSMDRIQP-LRIM 501 (656)
Q Consensus 427 l~~spd~~~L~s~s~Dg~I~lwd~~~~~~---~~~~~~h~~~V~~l~~sp~-~~~l~sgs~Dg~i~lwd~~~~~~-~~~~ 501 (656)
+..+|..+.|++.+.+|.|.+||.+.... ..+..........+.|+|. ..+|++.+..+-+.+||.+.... +...
T Consensus 155 m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~ 234 (609)
T KOG4227|consen 155 MDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQR 234 (609)
T ss_pred cccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhh
Confidence 99999999999999999999999986542 2333334556788999995 56788888889999999986432 2111
Q ss_pred ---cCCCC---CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCC-------CeEEEEEcCCCCEEEEEECC
Q 006220 502 ---AGHLS---DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-------MILSLAMSPDGRYMASGDED 568 (656)
Q Consensus 502 ---~~~~~---~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~-------~i~~l~~sp~g~~L~s~~~d 568 (656)
.+-.. .-..+.|+|+|+.+.+--....-.+||+-+..|...-..|.. .+.+++|.-+. -+++|+.+
T Consensus 235 ~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~ 313 (609)
T KOG4227|consen 235 SMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDH 313 (609)
T ss_pred hccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcc
Confidence 12112 225688999999998877777777899887655433233322 45677777554 49999999
Q ss_pred CcEEEEeCCCC-----------------------eeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 569 GTIMMWDLASG-----------------------RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 569 g~I~iwD~~~~-----------------------~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
-.|++|.+... +.+..+++|.+-+..+.|+|...+|++.|..+.++||.-..
T Consensus 314 ~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 314 WGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred cceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccccc
Confidence 99999988531 23445679999999999999999999999999999998543
No 223
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=3.1e-13 Score=147.10 Aligned_cols=222 Identities=17% Similarity=0.154 Sum_probs=149.9
Q ss_pred EEeeCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220 346 TFINTHNGLNCASISQDGSLVAGGFSD---SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (656)
Q Consensus 346 ~~~~~~~~V~~l~fs~dg~~La~g~~d---g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 422 (656)
.+..+...+.+.+|||||+.|+..+.+ ..|.+||+.+.. ...+....+
T Consensus 190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~-----------------------------~~~l~~~~g 240 (427)
T PRK02889 190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR-----------------------------RRVVANFKG 240 (427)
T ss_pred EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC-----------------------------EEEeecCCC
Confidence 344566789999999999999887643 359999987421 111222334
Q ss_pred CEEEEEEccCCCEEE-EEeCCCeEEEEeccC-CceeEEeeCCCccEEEEEEecCCCEEEEEEC-CCcEEEEEC--CCCce
Q 006220 423 PVYSASFSPLGDFIL-SSSADTTIRLWSTKL-NANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRTARIWSM--DRIQP 497 (656)
Q Consensus 423 ~V~~l~~spd~~~L~-s~s~Dg~I~lwd~~~-~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~-Dg~i~lwd~--~~~~~ 497 (656)
.+.+.+|+|||+.|+ +.+.+|...||.++. +.....+..+........|+|+|+.++..+. +|...+|.+ .++..
T Consensus 241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~ 320 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA 320 (427)
T ss_pred CccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce
Confidence 566889999999876 567788777766532 2234455555555667899999998887664 456666654 44443
Q ss_pred eEEecCCCCCeeEEEEcCCCCEEEEEECCC---cEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCC---cE
Q 006220 498 LRIMAGHLSDVDCVRWHINCNYIATGSSDK---TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG---TI 571 (656)
Q Consensus 498 ~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg---~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg---~I 571 (656)
.+.. .+.......+|+|+|++|+..+.++ .|.+||+.+++...... . .......|+|||++|+.++.++ .+
T Consensus 321 ~~lt-~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~-~~~~~p~~spdg~~l~~~~~~~g~~~l 397 (427)
T PRK02889 321 QRVT-FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-T-TRDESPSFAPNGRYILYATQQGGRSVL 397 (427)
T ss_pred EEEe-cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC-C-CCccCceECCCCCEEEEEEecCCCEEE
Confidence 3332 2223344678999999998877654 69999998887654332 2 3346789999999888876544 35
Q ss_pred EEEeCCCCeeeEeeeCCCccEEEEEEcCC
Q 006220 572 MMWDLASGRCVTPLMGHTSCVWTLAYSCE 600 (656)
Q Consensus 572 ~iwD~~~~~~~~~~~~h~~~V~~l~~s~~ 600 (656)
.+.++ .|.....+..+.+.+...+|+|-
T Consensus 398 ~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 398 AAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 56566 46666666667677788888874
No 224
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=8.2e-13 Score=144.21 Aligned_cols=199 Identities=18% Similarity=0.179 Sum_probs=142.0
Q ss_pred eecCccCEEEEEEccCCCEEEEEeC---CCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEE-EEECCC--cEEEE
Q 006220 417 YQGHSGPVYSASFSPLGDFILSSSA---DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA-SSSHDR--TARIW 490 (656)
Q Consensus 417 l~~h~~~V~~l~~spd~~~L~s~s~---Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-sgs~Dg--~i~lw 490 (656)
+..|...+.+.+|+|||+.|+.++. +..|.+||+.++.... +..+.....+..|+|+|+.++ +.+.+| .|++|
T Consensus 199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~ 277 (433)
T PRK04922 199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVM 277 (433)
T ss_pred eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEE
Confidence 4456778999999999999888764 3469999998776543 333344556789999999775 445555 59999
Q ss_pred ECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEEC-CCc--EEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 006220 491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DKT--VRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (656)
Q Consensus 491 d~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg~--V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~ 567 (656)
|+.+++.. .+..+.......+|+|+|++|+.++. +|. |+++|+.+++..+.. .+......++|||+|++|+..+.
T Consensus 278 d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~~g~~~~~~~~SpDG~~Ia~~~~ 355 (433)
T PRK04922 278 DLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT-FQGNYNARASVSPDGKKIAMVHG 355 (433)
T ss_pred ECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee-cCCCCccCEEECCCCCEEEEEEC
Confidence 99887644 44455555678899999999887764 444 777787777654432 33344557899999999987654
Q ss_pred CC---cEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECC---CcEEEEeCCC
Q 006220 568 DG---TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD---CTVKLWDVTT 620 (656)
Q Consensus 568 dg---~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~D---g~I~iWd~~~ 620 (656)
++ .|.+||+.+++.. .+. +........|+|||++++..+.+ +.|.+|++..
T Consensus 356 ~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 356 SGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred CCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 43 6999999887654 332 22345567999999988777653 3577888754
No 225
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.55 E-value=3.2e-13 Score=132.54 Aligned_cols=250 Identities=22% Similarity=0.370 Sum_probs=178.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecC----------
Q 006220 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH---------- 420 (656)
Q Consensus 351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h---------- 420 (656)
..-|.|+.|...|.+||+|..+|.|.++.-..... +.......++.|
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~-----------------------~ey~~~t~fqshepEFDYLkSl 81 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK-----------------------GEYNFQTEFQSHEPEFDYLKSL 81 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccc-----------------------cceeeeeeeeccCcccchhhhh
Confidence 45689999999999999999999999998654221 001122223333
Q ss_pred --ccCEEEEEEccCCC--EEEEEeCCCeEEEEeccCCce-----------------------------------eEEe-e
Q 006220 421 --SGPVYSASFSPLGD--FILSSSADTTIRLWSTKLNAN-----------------------------------LVCY-K 460 (656)
Q Consensus 421 --~~~V~~l~~spd~~--~L~s~s~Dg~I~lwd~~~~~~-----------------------------------~~~~-~ 460 (656)
...|..+.|.+++. .++..+.|.+|++|.+..... .+.+ .
T Consensus 82 eieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aN 161 (433)
T KOG1354|consen 82 EIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYAN 161 (433)
T ss_pred hhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccc
Confidence 35688899998775 567778899999998652211 0111 3
Q ss_pred CCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEE---ecCC-----CCCeeEEEEcC-CCCEEEEEECCCcEEE
Q 006220 461 GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI---MAGH-----LSDVDCVRWHI-NCNYIATGSSDKTVRL 531 (656)
Q Consensus 461 ~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~---~~~~-----~~~V~~v~~~p-~~~~l~tgs~dg~V~i 531 (656)
.|+..|.+++++.|+..++++. |=.|.+|+++-...... +..+ ..-|++..||| ..+.++-.++.|+|++
T Consensus 162 aHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred cceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 5888899999999999888874 67899999864332221 2222 24588999999 4678888999999999
Q ss_pred EeCCCCeeE----EE------------EecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC-CCCeeeEeeeCCC-----
Q 006220 532 WDVSSGECV----RI------------FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL-ASGRCVTPLMGHT----- 589 (656)
Q Consensus 532 wd~~~~~~~----~~------------~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~-~~~~~~~~~~~h~----- 589 (656)
.|++..... .. |..--..|..+.|+++|+|+++-+. -+|++||+ ...+++.++.-|.
T Consensus 241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~k 319 (433)
T KOG1354|consen 241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSK 319 (433)
T ss_pred eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHH
Confidence 999853221 11 1122346888999999999998764 58999999 4566777766553
Q ss_pred -------ccE---EEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220 590 -------SCV---WTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625 (656)
Q Consensus 590 -------~~V---~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~ 625 (656)
..| ..++|+-++.+++||+..+.++++++..+.+..
T Consensus 320 Lc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d 365 (433)
T KOG1354|consen 320 LCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKED 365 (433)
T ss_pred HHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCccee
Confidence 122 357899999999999999999999987766543
No 226
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.55 E-value=5.2e-13 Score=128.67 Aligned_cols=152 Identities=22% Similarity=0.418 Sum_probs=113.7
Q ss_pred EEEEEecCCCEEEEEEC----------CCcEEEEECCC-CceeEEec-CCCCCeeEEEEcCCCCEEEE--EECCCcEEEE
Q 006220 467 WDVQFNPQGHYFASSSH----------DRTARIWSMDR-IQPLRIMA-GHLSDVDCVRWHINCNYIAT--GSSDKTVRLW 532 (656)
Q Consensus 467 ~~l~~sp~~~~l~sgs~----------Dg~i~lwd~~~-~~~~~~~~-~~~~~V~~v~~~p~~~~l~t--gs~dg~V~iw 532 (656)
..+.|+|+|.+|++-.. -|...+|.++. ..++..+. ...++|.+++|+|+|+.+++ |..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46889999988766543 12344554422 23444443 24457999999999998765 4467899999
Q ss_pred eCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEEC---CCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEEC
Q 006220 533 DVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE---DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA 609 (656)
Q Consensus 533 d~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~---dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~ 609 (656)
|++ ++.+..+ +...+..+.|||+|++|++|+. .|.|.+||.++.+.+..... ..++.++|+|+|++|++++.
T Consensus 89 d~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEEEEEe
Confidence 996 6666665 3567889999999999999874 36799999999888877643 34789999999999999874
Q ss_pred ------CCcEEEEeCCCCCce
Q 006220 610 ------DCTVKLWDVTTSTKV 624 (656)
Q Consensus 610 ------Dg~I~iWd~~~~~~~ 624 (656)
|+.++||++. |+.+
T Consensus 164 ~~r~~~dng~~Iw~~~-G~~l 183 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQ-GRLL 183 (194)
T ss_pred ccceeccccEEEEEec-CeEe
Confidence 7899999985 4444
No 227
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.55 E-value=8.9e-14 Score=131.91 Aligned_cols=158 Identities=19% Similarity=0.309 Sum_probs=129.3
Q ss_pred cCccCEEEEEEccC-CC--EEEEEeCCCeEEEEeccCCce----------eEEeeCCCccEEEEEEecCCCEEEEEECCC
Q 006220 419 GHSGPVYSASFSPL-GD--FILSSSADTTIRLWSTKLNAN----------LVCYKGHNYPVWDVQFNPQGHYFASSSHDR 485 (656)
Q Consensus 419 ~h~~~V~~l~~spd-~~--~L~s~s~Dg~I~lwd~~~~~~----------~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg 485 (656)
+..+.|.|..|..+ +. +|++|-++|.|.+||+.++.. ...+..|..+|.++.|.+.-..=++|+.+.
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~d 227 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADD 227 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccc
Confidence 34577888886543 33 467888999999999998743 334456999999999998766677888888
Q ss_pred cEEEEECCCCc---eeE-EecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCE
Q 006220 486 TARIWSMDRIQ---PLR-IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRY 561 (656)
Q Consensus 486 ~i~lwd~~~~~---~~~-~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~ 561 (656)
.+..|+++... +++ ...-....|..+..-|+++.+||++-|+.||+|..++.+++.+++-|.+.|++++|+|+...
T Consensus 228 kl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~l 307 (323)
T KOG0322|consen 228 KLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCEL 307 (323)
T ss_pred cceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCch
Confidence 89999886531 111 11222356888999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCcEEEEeC
Q 006220 562 MASGDEDGTIMMWDL 576 (656)
Q Consensus 562 L~s~~~dg~I~iwD~ 576 (656)
+|+++.|++|.+|++
T Consensus 308 mAaaskD~rISLWkL 322 (323)
T KOG0322|consen 308 MAAASKDARISLWKL 322 (323)
T ss_pred hhhccCCceEEeeec
Confidence 999999999999986
No 228
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=1.5e-12 Score=142.21 Aligned_cols=220 Identities=14% Similarity=0.098 Sum_probs=152.4
Q ss_pred EEeeCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220 346 TFINTHNGLNCASISQDGSLVAGGFS---DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (656)
Q Consensus 346 ~~~~~~~~V~~l~fs~dg~~La~g~~---dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 422 (656)
.+..+...+.+.+|||||+.|+..+. +..|.+|++.+.. ...+..+.+
T Consensus 196 ~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~-----------------------------~~~l~~~~g 246 (435)
T PRK05137 196 YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ-----------------------------RELVGNFPG 246 (435)
T ss_pred EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc-----------------------------EEEeecCCC
Confidence 34566778999999999999988753 4679999986421 122344566
Q ss_pred CEEEEEEccCCCEEE-EEeCCCe--EEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC-CC--cEEEEECCCCc
Q 006220 423 PVYSASFSPLGDFIL-SSSADTT--IRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DR--TARIWSMDRIQ 496 (656)
Q Consensus 423 ~V~~l~~spd~~~L~-s~s~Dg~--I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~-Dg--~i~lwd~~~~~ 496 (656)
.+.+.+|+|||+.|+ +.+.++. |.+||+.++.. ..+..+........|+|+|+.++.++. +| .|++||+..+.
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~ 325 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN 325 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC
Confidence 778899999999765 5555555 77778887654 445556666778999999999887773 33 68888987765
Q ss_pred eeEEecCCCCCeeEEEEcCCCCEEEEEECC---CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC-----
Q 006220 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSD---KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED----- 568 (656)
Q Consensus 497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d---g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d----- 568 (656)
..+.. .+...+....|+|+|++|+..+.+ ..|.+||+.++. .+.+. ....+..+.|+|||++|+..+.+
T Consensus 326 ~~~lt-~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~ 402 (435)
T PRK05137 326 PRRIS-FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGG 402 (435)
T ss_pred eEEee-cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCC
Confidence 54443 334556778999999999887643 368889976554 34343 23356788999999988775543
Q ss_pred -CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCC
Q 006220 569 -GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCE 600 (656)
Q Consensus 569 -g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~ 600 (656)
..+.++|+..+.. ..+. ..+.+...+|+|-
T Consensus 403 ~~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 403 APKLYTVDLTGRNE-REVP-TPGDASDPAWSPL 433 (435)
T ss_pred cceEEEEECCCCce-EEcc-CCCCccCcccCCC
Confidence 2578888865543 3443 2344666777763
No 229
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.54 E-value=7.6e-13 Score=127.53 Aligned_cols=155 Identities=19% Similarity=0.403 Sum_probs=115.7
Q ss_pred EEEEEccCCCEEEEEeC----------CCeEEEEeccCC-ceeEEeeC-CCccEEEEEEecCCCEEEEEE--CCCcEEEE
Q 006220 425 YSASFSPLGDFILSSSA----------DTTIRLWSTKLN-ANLVCYKG-HNYPVWDVQFNPQGHYFASSS--HDRTARIW 490 (656)
Q Consensus 425 ~~l~~spd~~~L~s~s~----------Dg~I~lwd~~~~-~~~~~~~~-h~~~V~~l~~sp~~~~l~sgs--~Dg~i~lw 490 (656)
..+.|+|+|.+|+.-.. -|...+|.++.. .....+.. ..++|.+++|+|+|..|++.. .++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 35789999987664332 134566666332 23333332 345799999999999976653 67899999
Q ss_pred ECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEEC---CCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 006220 491 SMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS---DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (656)
Q Consensus 491 d~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~---dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~ 567 (656)
|++ .+++..+. ...++.+.|+|+|++|++|+. .|.|.+||+++.+.+..+. | ..++.++|||+|++|++++.
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence 997 56666653 467889999999999999874 4679999999888887664 3 35789999999999999864
Q ss_pred ------CCcEEEEeCCCCeeeEee
Q 006220 568 ------DGTIMMWDLASGRCVTPL 585 (656)
Q Consensus 568 ------dg~I~iwD~~~~~~~~~~ 585 (656)
|+.++||+. .|+.+...
T Consensus 164 ~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred ccceeccccEEEEEe-cCeEeEec
Confidence 788999998 57766554
No 230
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.4e-12 Score=141.87 Aligned_cols=197 Identities=18% Similarity=0.196 Sum_probs=135.4
Q ss_pred eecCccCEEEEEEccCCCEEEEEeCC---CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEE-EEECCCcEEEEE-
Q 006220 417 YQGHSGPVYSASFSPLGDFILSSSAD---TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA-SSSHDRTARIWS- 491 (656)
Q Consensus 417 l~~h~~~V~~l~~spd~~~L~s~s~D---g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-sgs~Dg~i~lwd- 491 (656)
+..+...+.+.+|+|||+.|+.++.+ ..|.+||+.+++... +......+....|+|+|+.++ +.+.+|...+|.
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 269 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV 269 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence 44577889999999999998877643 459999999886543 333344566899999999886 456777766665
Q ss_pred -CCCCceeEEecCCCCCeeEEEEcCCCCEEEEEEC-CCcEEEEe--CCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 006220 492 -MDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DKTVRLWD--VSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (656)
Q Consensus 492 -~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg~V~iwd--~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~ 567 (656)
+..+. .+.+..+........|+|+|+.|+..+. +|...+|. +.++...+. ..+........|||+|++|+..+.
T Consensus 270 d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l-t~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 270 NADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV-TFTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred ECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE-ecCCCCcCceEECCCCCEEEEEEc
Confidence 44443 4445555555677899999998886654 45556664 445544332 223334456789999999987765
Q ss_pred CC---cEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCC---cEEEEeC
Q 006220 568 DG---TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC---TVKLWDV 618 (656)
Q Consensus 568 dg---~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg---~I~iWd~ 618 (656)
++ .|.+||+.+++.. .+..+ .......|+|||+.|+.++.++ .+.+.++
T Consensus 348 ~~g~~~I~v~d~~~g~~~-~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 348 VGGAFKLYVQDLATGQVT-ALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred cCCcEEEEEEECCCCCeE-EccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 54 6999999887644 33322 2346789999999988887554 2445455
No 231
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.51 E-value=1.9e-12 Score=144.92 Aligned_cols=217 Identities=17% Similarity=0.246 Sum_probs=162.9
Q ss_pred CceeeEEeecCccCEEEEEEccCC-CEEEEEeCCCeEEEEeccCC-------ceeEEeeCCCccEEEEEEecCCCEEEEE
Q 006220 410 RKRSYTLYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKLN-------ANLVCYKGHNYPVWDVQFNPQGHYFASS 481 (656)
Q Consensus 410 ~~~~~~~l~~h~~~V~~l~~spd~-~~L~s~s~Dg~I~lwd~~~~-------~~~~~~~~h~~~V~~l~~sp~~~~l~sg 481 (656)
.+..+..+..|+..|..++.++.. .+++|||.||+|++|+.+.- .+..++......+.++.+.+.++.+|++
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 456677788899999999988766 89999999999999997631 2334455457789999999999999999
Q ss_pred ECCCcEEEEECCCCc-------eeEEecCCCC-C-eeEEEEcC-CC-CEEEEEECCCcEEEEeCCCCeeEEEEe--cCCC
Q 006220 482 SHDRTARIWSMDRIQ-------PLRIMAGHLS-D-VDCVRWHI-NC-NYIATGSSDKTVRLWDVSSGECVRIFI--GHRS 548 (656)
Q Consensus 482 s~Dg~i~lwd~~~~~-------~~~~~~~~~~-~-V~~v~~~p-~~-~~l~tgs~dg~V~iwd~~~~~~~~~~~--~h~~ 548 (656)
+.||.|++.+++... +.+....+.. . |.+-+|.. .+ ..++.++.-+.|..||+++......++ ...+
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 999999999998621 2223222222 2 23333332 22 367888889999999998766554433 2347
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeee-CCCccEEEEEEcC---CCCEEEEEE--CCCcEEEEeCCCCC
Q 006220 549 MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-GHTSCVWTLAYSC---EGSLLASGS--ADCTVKLWDVTTST 622 (656)
Q Consensus 549 ~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~-~h~~~V~~l~~s~---~~~~l~sgs--~Dg~I~iWd~~~~~ 622 (656)
.|++++.+|.+.+++.|+..|.+.+||++-+.++..+. .+..+|..+..+| .....++++ ..+-|.+|++.++.
T Consensus 1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 89999999999999999999999999999998888775 3457788887766 334555554 46789999999986
Q ss_pred ceee
Q 006220 623 KVLK 626 (656)
Q Consensus 623 ~~~~ 626 (656)
+...
T Consensus 1277 ~~~v 1280 (1431)
T KOG1240|consen 1277 RQTV 1280 (1431)
T ss_pred ceEE
Confidence 6443
No 232
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=2.7e-12 Score=128.28 Aligned_cols=221 Identities=14% Similarity=0.219 Sum_probs=165.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (656)
Q Consensus 352 ~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 431 (656)
..|..++.. || .|.+|..+|.+.+|........ ......+..+ ..++.+.-++
T Consensus 106 ~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~h------------------------ss~l~~la~g-~g~~~~r~~~ 158 (412)
T KOG3881|consen 106 KSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLH------------------------SSKLIKLATG-PGLYDVRQTD 158 (412)
T ss_pred ccccchhhc-CC-EEEEEecCCcEEEEeccCCccc------------------------cccceeeecC-CceeeeccCC
Confidence 344444443 33 5667789999999998742110 0111222222 5567777777
Q ss_pred CCCE-EEEEeCC--CeEEEEeccCCceeEEeeCC-------CccE--EEEEEecC--CCEEEEEECCCcEEEEECCCC-c
Q 006220 432 LGDF-ILSSSAD--TTIRLWSTKLNANLVCYKGH-------NYPV--WDVQFNPQ--GHYFASSSHDRTARIWSMDRI-Q 496 (656)
Q Consensus 432 d~~~-L~s~s~D--g~I~lwd~~~~~~~~~~~~h-------~~~V--~~l~~sp~--~~~l~sgs~Dg~i~lwd~~~~-~ 496 (656)
.... +++|+.. ..+.+||+...+.+..-+.- .-|| +++.|-+. ...|++++.-+.+++||++.+ +
T Consensus 159 ~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR 238 (412)
T KOG3881|consen 159 TDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR 238 (412)
T ss_pred CCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc
Confidence 6654 5568888 78999999977555443321 1234 46788886 788999999999999999864 5
Q ss_pred eeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEE-EecCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI-FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575 (656)
Q Consensus 497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~-~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD 575 (656)
|+..+.-...+++++...|.++.|++|..-|.+..||++++..... +.+..+.|++|..+|.+++|++||-|..|+|+|
T Consensus 239 PV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 239 PVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred ceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEee
Confidence 7888887888999999999999999999999999999999998877 889999999999999999999999999999999
Q ss_pred CCCCeeeEeeeCCCccEEEEEEcCC
Q 006220 576 LASGRCVTPLMGHTSCVWTLAYSCE 600 (656)
Q Consensus 576 ~~~~~~~~~~~~h~~~V~~l~~s~~ 600 (656)
+.+.+++.... -...++++-+.++
T Consensus 319 ~ktrkll~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 319 IKTRKLLHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred cccchhhhhhh-hhccccEEEecCC
Confidence 99977665442 1234566666543
No 233
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.48 E-value=2.9e-11 Score=118.07 Aligned_cols=197 Identities=16% Similarity=0.256 Sum_probs=141.1
Q ss_pred cCccCEEEEEEccCCCEEEEEeCCCeEEEEecc-CCceeEEeeCCC--ccEEEEEEecCCCEEEEEE-CCCcEEEEECCC
Q 006220 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTK-LNANLVCYKGHN--YPVWDVQFNPQGHYFASSS-HDRTARIWSMDR 494 (656)
Q Consensus 419 ~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~-~~~~~~~~~~h~--~~V~~l~~sp~~~~l~sgs-~Dg~i~lwd~~~ 494 (656)
....+|.+|.+.++ .+++.- .+.|.||... ..+.+..+.... ....+++-+.+..+||.-| .-|.|++-|+..
T Consensus 92 ~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~ 168 (346)
T KOG2111|consen 92 SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAS 168 (346)
T ss_pred EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhh
Confidence 35688999999854 455554 4689999987 334455444322 2244444444445555544 569999999976
Q ss_pred Cce--eEEecCCCCCeeEEEEcCCCCEEEEEECCCc-EEEEeCCCCeeEEEEec--CCCCeEEEEEcCCCCEEEEEECCC
Q 006220 495 IQP--LRIMAGHLSDVDCVRWHINCNYIATGSSDKT-VRLWDVSSGECVRIFIG--HRSMILSLAMSPDGRYMASGDEDG 569 (656)
Q Consensus 495 ~~~--~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~-V~iwd~~~~~~~~~~~~--h~~~i~~l~~sp~g~~L~s~~~dg 569 (656)
.+. ...+..|.++|.|++.+-+|..+||+|..|+ |||||..+|..+..+.- ....|.||+|||++.+|+++++.|
T Consensus 169 ~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKg 248 (346)
T KOG2111|consen 169 TKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKG 248 (346)
T ss_pred cCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCC
Confidence 655 5778899999999999999999999999997 89999999999988763 235799999999999999999999
Q ss_pred cEEEEeCCCCeee------------------------EeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220 570 TIMMWDLASGRCV------------------------TPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618 (656)
Q Consensus 570 ~I~iwD~~~~~~~------------------------~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~ 618 (656)
++.||.++....- ..+.-..+...-++|..+.+.++..+.||+-+=+.+
T Consensus 249 TlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f 321 (346)
T KOG2111|consen 249 TLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKF 321 (346)
T ss_pred eEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEe
Confidence 9999988642211 111122344455667666566666777777554443
No 234
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.45 E-value=4.8e-12 Score=140.34 Aligned_cols=198 Identities=20% Similarity=0.335 Sum_probs=161.7
Q ss_pred cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCC----ccEEEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 006220 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN----YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP 497 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~----~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~ 497 (656)
+.|....+.-+...++.++.+..+.+||...+.......+.. .+..-+.++++.-++++|+--+.|.+|+......
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 344444555566788888888999999988665554443221 1223345667778999999999999999864333
Q ss_pred eEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEE-EEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220 498 LRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR-IFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (656)
Q Consensus 498 ~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~-~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~ 576 (656)
-..+.+|.+.+..+.|+-+|.++++.|.|.++|+|++.+.+... ..-+|+..|..++|.|+ .+++++.|.+.++|+.
T Consensus 168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV 245 (967)
T ss_pred cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence 33678999999999999999999999999999999999988776 66789999999999998 9999999999999976
Q ss_pred CCCeeeEeeeCCC-ccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220 577 ASGRCVTPLMGHT-SCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 577 ~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
.+..+..+.+|. ..|+.++..++...++|++.||.+++|++....
T Consensus 246 -~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 246 -NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred -ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 466666888887 689999999999999999999999999987643
No 235
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.44 E-value=2e-11 Score=119.32 Aligned_cols=242 Identities=19% Similarity=0.283 Sum_probs=166.7
Q ss_pred CCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220 352 NGLNCASISQDGSLVAGG-FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (656)
Q Consensus 352 ~~V~~l~fs~dg~~La~g-~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 430 (656)
+.|.-+.|+.|.-++.++ ..++.|.+|++.. ..-.......+.++.+++||
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Q----------------------------pew~ckIdeg~agls~~~WS 100 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQ----------------------------PEWYCKIDEGQAGLSSISWS 100 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeec----------------------------ceeEEEeccCCCcceeeeEC
Confidence 346667788887776654 6788999999874 22344555667889999999
Q ss_pred cCCCEE-EEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC--------------------------
Q 006220 431 PLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-------------------------- 483 (656)
Q Consensus 431 pd~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~-------------------------- 483 (656)
|||+.+ .+...+-.|.+|++.+...... +-....+..++|+|+|++.+.++.
T Consensus 101 PdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~ 179 (447)
T KOG4497|consen 101 PDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTI 179 (447)
T ss_pred CCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcc
Confidence 999755 5666788999999987655432 222345678899999988877664
Q ss_pred ----------CCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEE----------
Q 006220 484 ----------DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF---------- 543 (656)
Q Consensus 484 ----------Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~---------- 543 (656)
+..+.+||.--...+..+. -.-.+..++|+|.+++|++|+.|+.+|+.+--+.+....|
T Consensus 180 DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~ 258 (447)
T KOG4497|consen 180 DLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPT 258 (447)
T ss_pred cccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCch
Confidence 1223444432111222221 2246889999999999999999999998654222211100
Q ss_pred --------------------------------------------------e------cCCCCeEEEEEcCCCCEEEEEEC
Q 006220 544 --------------------------------------------------I------GHRSMILSLAMSPDGRYMASGDE 567 (656)
Q Consensus 544 --------------------------------------------------~------~h~~~i~~l~~sp~g~~L~s~~~ 567 (656)
+ .....+.-++||+|..++++-.+
T Consensus 259 ~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd 338 (447)
T KOG4497|consen 259 LHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRND 338 (447)
T ss_pred hhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecC
Confidence 0 11224567899999999988653
Q ss_pred --CCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220 568 --DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624 (656)
Q Consensus 568 --dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~ 624 (656)
-+.+.+||++..+....+ -...+|....|+|....|+.+.....+++|.......+
T Consensus 339 ~~PnalW~Wdlq~l~l~avL-iQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V 396 (447)
T KOG4497|consen 339 KYPNALWLWDLQNLKLHAVL-IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVV 396 (447)
T ss_pred CCCceEEEEechhhhhhhhh-hhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEE
Confidence 367999999876544333 34568999999999988888888888999988664433
No 236
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.44 E-value=2.3e-10 Score=121.27 Aligned_cols=244 Identities=14% Similarity=0.150 Sum_probs=159.9
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCC
Q 006220 355 NCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGD 434 (656)
Q Consensus 355 ~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~ 434 (656)
..+.|+|||+++.+++.||.|.++|+.+.. ....... .....++++|+||+
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~----------------------------~v~~i~~-G~~~~~i~~s~DG~ 90 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGK----------------------------VVATIKV-GGNPRGIAVSPDGK 90 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSS----------------------------EEEEEE--SSEEEEEEE--TTT
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCccc----------------------------EEEEEec-CCCcceEEEcCCCC
Confidence 447799999999999999999999998622 2222322 23457899999999
Q ss_pred EEEEEe-CCCeEEEEeccCCceeEEeeCC-------CccEEEEEEecCCCEEEEEECC-CcEEEEECCCCceeEE-ecCC
Q 006220 435 FILSSS-ADTTIRLWSTKLNANLVCYKGH-------NYPVWDVQFNPQGHYFASSSHD-RTARIWSMDRIQPLRI-MAGH 504 (656)
Q Consensus 435 ~L~s~s-~Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~l~~sp~~~~l~sgs~D-g~i~lwd~~~~~~~~~-~~~~ 504 (656)
+++++. ..+++.++|..+.+.+..+... ...+..+..+|....++..-.| +.|-+.|....+++.. ....
T Consensus 91 ~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~ 170 (369)
T PF02239_consen 91 YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV 170 (369)
T ss_dssp EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE-
T ss_pred EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc
Confidence 988665 6899999999999988877543 3457788888888877766654 7888888877655432 2223
Q ss_pred CCCeeEEEEcCCCCEEEEE-ECCCcEEEEeCCCCeeEEEEe---------------------------------------
Q 006220 505 LSDVDCVRWHINCNYIATG-SSDKTVRLWDVSSGECVRIFI--------------------------------------- 544 (656)
Q Consensus 505 ~~~V~~v~~~p~~~~l~tg-s~dg~V~iwd~~~~~~~~~~~--------------------------------------- 544 (656)
........|+|+++|++++ ..+..|-++|..+++.+..+.
T Consensus 171 g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~ 250 (369)
T PF02239_consen 171 GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDP 250 (369)
T ss_dssp -TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--T
T ss_pred cccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCc
Confidence 3456788999999998775 456688888888776554321
Q ss_pred ----------------cCCCCeEEEEEcCCCCEEEEE----ECCCcEEEEeCCCCeeeEeeeCC-CccEEEEEEcCCCCE
Q 006220 545 ----------------GHRSMILSLAMSPDGRYMASG----DEDGTIMMWDLASGRCVTPLMGH-TSCVWTLAYSCEGSL 603 (656)
Q Consensus 545 ----------------~h~~~i~~l~~sp~g~~L~s~----~~dg~I~iwD~~~~~~~~~~~~h-~~~V~~l~~s~~~~~ 603 (656)
...++ .-+..+|+++++++. ...++|.++|..+.+.+.++... ...+..+.|+++|+.
T Consensus 251 v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~ 329 (369)
T PF02239_consen 251 VSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKE 329 (369)
T ss_dssp TT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSE
T ss_pred cccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCE
Confidence 11111 336679999999988 45589999999999888777532 235899999999997
Q ss_pred EEEEECC--CcEEEEeCCCCCceeecc
Q 006220 604 LASGSAD--CTVKLWDVTTSTKVLKTE 628 (656)
Q Consensus 604 l~sgs~D--g~I~iWd~~~~~~~~~~~ 628 (656)
+..+..+ |.|.|||..+.+.....+
T Consensus 330 v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 330 VWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred EEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 6655544 369999999977665443
No 237
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.43 E-value=3.5e-11 Score=117.60 Aligned_cols=264 Identities=16% Similarity=0.268 Sum_probs=163.2
Q ss_pred ceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCC
Q 006220 331 RVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVA-GGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409 (656)
Q Consensus 331 ~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La-~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (656)
.++.|+...|...+ .+-....++.+++|||||+.+. +..-+-.|.||++.+...........+ ...-.+.+++
T Consensus 72 ~vqvwsl~Qpew~c-kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~-----~kg~~f~~dg 145 (447)
T KOG4497|consen 72 KVQVWSLVQPEWYC-KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTN-----VKGYAFHPDG 145 (447)
T ss_pred eEEEEEeecceeEE-EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccC-----ceeEEECCCC
Confidence 56667665555433 3445567899999999996655 455688999999986432111100000 0000000000
Q ss_pred Cc---------------------eeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEE
Q 006220 410 RK---------------------RSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWD 468 (656)
Q Consensus 410 ~~---------------------~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~ 468 (656)
.. .....+.-.+-..+++.|+|||..| .+||.--.-.+..+. ..-.+..
T Consensus 146 ~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~l---------aVwd~~Leykv~aYe-~~lG~k~ 215 (447)
T KOG4497|consen 146 QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWL---------AVWDNVLEYKVYAYE-RGLGLKF 215 (447)
T ss_pred ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEE---------EEecchhhheeeeee-eccceeE
Confidence 00 0000111112234556666666544 345533222222332 2346888
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCc----------------------------------------------------
Q 006220 469 VQFNPQGHYFASSSHDRTARIWSMDRIQ---------------------------------------------------- 496 (656)
Q Consensus 469 l~~sp~~~~l~sgs~Dg~i~lwd~~~~~---------------------------------------------------- 496 (656)
++|+|.++++++|+.|+.+++.+--+-+
T Consensus 216 v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~ 295 (447)
T KOG4497|consen 216 VEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETI 295 (447)
T ss_pred EEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhh
Confidence 9999999999999999998875421000
Q ss_pred ------e--eEE------ecCCCCCeeEEEEcCCCCEEEEEEC--CCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCC
Q 006220 497 ------P--LRI------MAGHLSDVDCVRWHINCNYIATGSS--DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560 (656)
Q Consensus 497 ------~--~~~------~~~~~~~V~~v~~~p~~~~l~tgs~--dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~ 560 (656)
+ +.. +......+.-++|++++.|++|-.+ -+.+.+||++.-+.-..+. ...+|....|.|...
T Consensus 296 YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~p 374 (447)
T KOG4497|consen 296 YEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRP 374 (447)
T ss_pred hhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCc
Confidence 0 001 1112234667899999999988653 3679999998776654443 457899999999988
Q ss_pred EEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCc
Q 006220 561 YMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCT 612 (656)
Q Consensus 561 ~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~ 612 (656)
.|+.+.....+++|... |-......+..-.|..+.|..+|..++-.+.|..
T Consensus 375 rL~vctg~srLY~W~ps-g~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 375 RLVVCTGKSRLYFWAPS-GPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred eEEEEcCCceEEEEcCC-CceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 88888777889999864 4444444444568999999999999999998864
No 238
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.43 E-value=8e-11 Score=128.18 Aligned_cols=198 Identities=19% Similarity=0.180 Sum_probs=140.2
Q ss_pred EeecCccCEEEEEEccCCCEEEEEeCC---CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEE-ECCC--cEEE
Q 006220 416 LYQGHSGPVYSASFSPLGDFILSSSAD---TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS-SHDR--TARI 489 (656)
Q Consensus 416 ~l~~h~~~V~~l~~spd~~~L~s~s~D---g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sg-s~Dg--~i~l 489 (656)
.+..+...+.+.+|+|+|++|+.++.+ ..|++||+.++.... +..+...+.+++|+|+|..|+.. +.++ .|++
T Consensus 184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~ 262 (417)
T TIGR02800 184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYV 262 (417)
T ss_pred EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEE
Confidence 344566778899999999999877654 479999998875543 33355566779999999877654 4444 5889
Q ss_pred EECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECC-C--cEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 006220 490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD-K--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD 566 (656)
Q Consensus 490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d-g--~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~ 566 (656)
|++.++... .+..+........|+|+|+.|+.++.. + .|++||+.+++..+ +..+...+..+.|+|+|++|+.++
T Consensus 263 ~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~~~~~~~~~~~spdg~~i~~~~ 340 (417)
T TIGR02800 263 MDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTFRGGYNASPSWSPDGDLIAFVH 340 (417)
T ss_pred EECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccCeEECCCCCEEEEEE
Confidence 998876543 334454555678999999998876643 3 58888988776543 444556677889999999999888
Q ss_pred CCC---cEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCc---EEEEeC
Q 006220 567 EDG---TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCT---VKLWDV 618 (656)
Q Consensus 567 ~dg---~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~---I~iWd~ 618 (656)
.++ .|.+||+.++... .+... .......|+|+|+.|+.++.++. +.+.+.
T Consensus 341 ~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 341 REGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred ccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 776 7999999875432 22222 22345689999998888776643 444443
No 239
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.42 E-value=1.8e-09 Score=114.24 Aligned_cols=249 Identities=15% Similarity=0.237 Sum_probs=166.1
Q ss_pred eeCCCCeEEEEEcCCCCEEEEEeC----CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220 348 INTHNGLNCASISQDGSLVAGGFS----DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (656)
Q Consensus 348 ~~~~~~V~~l~fs~dg~~La~g~~----dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 423 (656)
.........++++|++++|.+... +|.|..|++.... +..............
T Consensus 33 ~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~------------------------g~L~~~~~~~~~g~~ 88 (345)
T PF10282_consen 33 VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT------------------------GTLTLLNSVPSGGSS 88 (345)
T ss_dssp EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT------------------------TEEEEEEEEEESSSC
T ss_pred ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc------------------------ceeEEeeeeccCCCC
Confidence 334556778899999999988876 5689999887521 111122222223345
Q ss_pred EEEEEEccCCCEEEEEe-CCCeEEEEeccCCceeEE----ee----------CCCccEEEEEEecCCCEEEEEE-CCCcE
Q 006220 424 VYSASFSPLGDFILSSS-ADTTIRLWSTKLNANLVC----YK----------GHNYPVWDVQFNPQGHYFASSS-HDRTA 487 (656)
Q Consensus 424 V~~l~~spd~~~L~s~s-~Dg~I~lwd~~~~~~~~~----~~----------~h~~~V~~l~~sp~~~~l~sgs-~Dg~i 487 (656)
...++++|++++|+++. .+|+|.++++.....+.. +. .......++.|+|+|+++++.. ....|
T Consensus 89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v 168 (345)
T PF10282_consen 89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRV 168 (345)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEE
T ss_pred cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEE
Confidence 56799999999988876 489999999987433221 11 1234578899999999988875 34579
Q ss_pred EEEECCCCc--e--eEEec-CCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCC--CCee--EEEEec----C--CCCeE
Q 006220 488 RIWSMDRIQ--P--LRIMA-GHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVS--SGEC--VRIFIG----H--RSMIL 551 (656)
Q Consensus 488 ~lwd~~~~~--~--~~~~~-~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~--~~~~--~~~~~~----h--~~~i~ 551 (656)
.+|+++... . ...+. ........++|+|+++++++.. .+++|.+|++. ++.. +..... . .....
T Consensus 169 ~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 248 (345)
T PF10282_consen 169 YVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPA 248 (345)
T ss_dssp EEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEE
T ss_pred EEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCce
Confidence 999987654 2 12222 3446688999999999987765 46789999988 4432 222221 1 12578
Q ss_pred EEEEcCCCCEEEEEE-CCCcEEEEeCC--CC--eeeEeeeCCCccEEEEEEcCCCCEEEEEE-CCCcEEEEeCCC
Q 006220 552 SLAMSPDGRYMASGD-EDGTIMMWDLA--SG--RCVTPLMGHTSCVWTLAYSCEGSLLASGS-ADCTVKLWDVTT 620 (656)
Q Consensus 552 ~l~~sp~g~~L~s~~-~dg~I~iwD~~--~~--~~~~~~~~h~~~V~~l~~s~~~~~l~sgs-~Dg~I~iWd~~~ 620 (656)
.|+++|||++|+++. ..+.|.+|++. ++ +.+..+.......+.++++|+|++|++++ .++.|.+|++..
T Consensus 249 ~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 249 EIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred eEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 899999999988765 56789999993 23 23333433344579999999999998887 567899998854
No 240
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.41 E-value=1.7e-11 Score=128.79 Aligned_cols=189 Identities=19% Similarity=0.282 Sum_probs=158.1
Q ss_pred cCCCEEEEEeCCCeEEEEeccCCceeEEeeCC---CccEEEEEEe--------------------cCCCEEEEEECCCcE
Q 006220 431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGH---NYPVWDVQFN--------------------PQGHYFASSSHDRTA 487 (656)
Q Consensus 431 pd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h---~~~V~~l~~s--------------------p~~~~l~sgs~Dg~i 487 (656)
|...+++....||.+++|+...++....|... .+...+..|. .+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 44578999999999999999988776665431 2223333331 244567888899999
Q ss_pred EEEECCCCceeEEec--CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE
Q 006220 488 RIWSMDRIQPLRIMA--GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG 565 (656)
Q Consensus 488 ~lwd~~~~~~~~~~~--~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~ 565 (656)
.+|++..++....+. .|.+.|+++.++.+-..|.+++.|+.+..|+...+..++.+......+.+++.+|||..++++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence 999999998877776 799999999999999999999999999999999999999999999999999999999999998
Q ss_pred ECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCC-----CCEEEE-EECCCcEEEEeCCCC
Q 006220 566 DEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCE-----GSLLAS-GSADCTVKLWDVTTS 621 (656)
Q Consensus 566 ~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~-----~~~l~s-gs~Dg~I~iWd~~~~ 621 (656)
+ +.|.+||+.+++.+..+.||.++|.+++|.-+ |.++.+ ...+.-|.+|-+...
T Consensus 163 s--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 163 S--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred c--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 7 68999999999999999999999999999776 555555 445667888888763
No 241
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.41 E-value=4.3e-11 Score=130.31 Aligned_cols=218 Identities=17% Similarity=0.134 Sum_probs=147.3
Q ss_pred EEeeCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220 346 TFINTHNGLNCASISQDGSLVAGGFSD---SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (656)
Q Consensus 346 ~~~~~~~~V~~l~fs~dg~~La~g~~d---g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 422 (656)
.+..+...+.+.+|||||++||.++.+ ..|.+|++.+.. ...+..+.+
T Consensus 184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~-----------------------------~~~~~~~~~ 234 (417)
T TIGR02800 184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ-----------------------------REKVASFPG 234 (417)
T ss_pred EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC-----------------------------EEEeecCCC
Confidence 344556678999999999999987654 479999986421 112233455
Q ss_pred CEEEEEEccCCCEEE-EEeCCC--eEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECC-C--cEEEEECCCCc
Q 006220 423 PVYSASFSPLGDFIL-SSSADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD-R--TARIWSMDRIQ 496 (656)
Q Consensus 423 ~V~~l~~spd~~~L~-s~s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D-g--~i~lwd~~~~~ 496 (656)
.+.+++|+||++.|+ +.+.++ .|.+|++.++.. ..+..+........|+|+|..|+.++.. + .|++||+.+++
T Consensus 235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~ 313 (417)
T TIGR02800 235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE 313 (417)
T ss_pred CccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 677789999998775 444444 588899887654 3334444455677999999988776643 3 58888887766
Q ss_pred eeEEecCCCCCeeEEEEcCCCCEEEEEECCC---cEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCC---c
Q 006220 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDK---TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG---T 570 (656)
Q Consensus 497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg---~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg---~ 570 (656)
..+ +..+...+....|+|+|++++.++.++ .|.+||+.++.... +... .......|+|+|++|+.++.++ .
T Consensus 314 ~~~-l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~ 390 (417)
T TIGR02800 314 VRR-LTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGRMILYATTRGGRGV 390 (417)
T ss_pred EEE-eecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEeCCCcEE
Confidence 443 333455677889999999999988776 79999998865433 3322 2345568999999888876654 3
Q ss_pred EEEEeCCCCeeeEeeeCCCccEEEEEE
Q 006220 571 IMMWDLASGRCVTPLMGHTSCVWTLAY 597 (656)
Q Consensus 571 I~iwD~~~~~~~~~~~~h~~~V~~l~~ 597 (656)
+.+.+. .+.....+..+.+.+..++|
T Consensus 391 l~~~~~-~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 391 LGLVST-DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred EEEEEC-CCceeeECCCCCCCcCCCCC
Confidence 555554 45555555444455555555
No 242
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=7.3e-11 Score=129.03 Aligned_cols=221 Identities=15% Similarity=0.100 Sum_probs=145.9
Q ss_pred EEeeCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220 346 TFINTHNGLNCASISQDGSLVAGGFSD---SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (656)
Q Consensus 346 ~~~~~~~~V~~l~fs~dg~~La~g~~d---g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 422 (656)
.+..+...+.+.+|||||+.|+..+.+ ..|.+|++.+... ..+....+
T Consensus 193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-----------------------------~~l~~~~g 243 (430)
T PRK00178 193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-----------------------------EQITNFEG 243 (430)
T ss_pred EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-----------------------------EEccCCCC
Confidence 344556678999999999999876543 3588888764211 11112223
Q ss_pred CEEEEEEccCCCEEE-EEeCCC--eEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC-CC--cEEEEECCCCc
Q 006220 423 PVYSASFSPLGDFIL-SSSADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DR--TARIWSMDRIQ 496 (656)
Q Consensus 423 ~V~~l~~spd~~~L~-s~s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~-Dg--~i~lwd~~~~~ 496 (656)
.+....|+|||+.|+ +.+.+| .|.+||+.++... .+..+........|+|+|..++..+. +| .|+++++.+++
T Consensus 244 ~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~ 322 (430)
T PRK00178 244 LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR 322 (430)
T ss_pred CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 445689999999876 454555 5888899876543 34445555667899999998877663 33 57778887776
Q ss_pred eeEEecCCCCCeeEEEEcCCCCEEEEEECC-C--cEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC---Cc
Q 006220 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSD-K--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED---GT 570 (656)
Q Consensus 497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d-g--~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d---g~ 570 (656)
..+.... ........|+|+|++|+..+.+ + .|.+||+.+++... +. +........|+|+|++++..+.+ ..
T Consensus 323 ~~~lt~~-~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~ 399 (430)
T PRK00178 323 AERVTFV-GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LT-DTSLDESPSVAPNGTMLIYATRQQGRGV 399 (430)
T ss_pred EEEeecC-CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-cc-CCCCCCCceECCCCCEEEEEEecCCceE
Confidence 5443322 2234457899999999887653 3 58899998876543 32 22233356899999988876643 35
Q ss_pred EEEEeCCCCeeeEeeeCCCccEEEEEEcCC
Q 006220 571 IMMWDLASGRCVTPLMGHTSCVWTLAYSCE 600 (656)
Q Consensus 571 I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~ 600 (656)
|.++++. |.....+..+.+.+...+|+|-
T Consensus 400 l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 400 LMLVSIN-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence 7777774 4444455555566777788763
No 243
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1.9e-10 Score=125.76 Aligned_cols=200 Identities=17% Similarity=0.144 Sum_probs=137.0
Q ss_pred EeecCccCEEEEEEccCCCEEEEEeCC---CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEE-EECCC--cEEE
Q 006220 416 LYQGHSGPVYSASFSPLGDFILSSSAD---TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFAS-SSHDR--TARI 489 (656)
Q Consensus 416 ~l~~h~~~V~~l~~spd~~~L~s~s~D---g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s-gs~Dg--~i~l 489 (656)
.+..+...+.+.+|+|||+.|+..+.+ ..|.+|++.++.... +......+....|+|+|+.++. .+.+| .|++
T Consensus 193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~ 271 (430)
T PRK00178 193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYV 271 (430)
T ss_pred EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEE
Confidence 344567789999999999998876643 369999998776533 2223344557899999998874 44455 5888
Q ss_pred EECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEEC-CC--cEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 006220 490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DK--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD 566 (656)
Q Consensus 490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg--~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~ 566 (656)
||++++.... +..+........|+|+|+.|+..+. +| .|+++|+.+++..+... .........|+|+|++|+..+
T Consensus 272 ~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~~~~Spdg~~i~~~~ 349 (430)
T PRK00178 272 MDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNARPRLSADGKTLVMVH 349 (430)
T ss_pred EECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccceEECCCCCEEEEEE
Confidence 8998876543 4445556677899999998877654 33 58888888877544332 223344678999999998776
Q ss_pred CC-C--cEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECC---CcEEEEeCCC
Q 006220 567 ED-G--TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD---CTVKLWDVTT 620 (656)
Q Consensus 567 ~d-g--~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~D---g~I~iWd~~~ 620 (656)
.+ + .|.+||+.++... .+. +........|+|+|+.++..+.+ ..|.++++..
T Consensus 350 ~~~~~~~l~~~dl~tg~~~-~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 350 RQDGNFHVAAQDLQRGSVR-ILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred ccCCceEEEEEECCCCCEE-Ecc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 43 3 5889999887542 232 22222356899999998877654 3466777743
No 244
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=1.3e-10 Score=126.27 Aligned_cols=221 Identities=14% Similarity=0.136 Sum_probs=139.6
Q ss_pred CCCCeEEEEEcCCCCEEE---EEeCCCc--EEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220 350 THNGLNCASISQDGSLVA---GGFSDSS--LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (656)
Q Consensus 350 ~~~~V~~l~fs~dg~~La---~g~~dg~--I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 424 (656)
....+.+-+|||||+.++ +...+|. |.+.++.+.. ... +....+..
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~--------------------------~~~---lt~~~g~~ 233 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA--------------------------GKK---ILALQGNQ 233 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCC--------------------------ceE---eecCCCCc
Confidence 445567889999997532 4445554 5555554311 112 22233445
Q ss_pred EEEEEccCCCEEEEEeC-----CCeEEEEeccCC---ceeEEeeCCCccEEEEEEecCCCEEEEEE-CCCcEEEE--ECC
Q 006220 425 YSASFSPLGDFILSSSA-----DTTIRLWSTKLN---ANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIW--SMD 493 (656)
Q Consensus 425 ~~l~~spd~~~L~s~s~-----Dg~I~lwd~~~~---~~~~~~~~h~~~V~~l~~sp~~~~l~sgs-~Dg~i~lw--d~~ 493 (656)
...+|||||+.|+..+. +..+.+|++..+ .......++.......+|+|+|..|+..+ .+|...+| +++
T Consensus 234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~ 313 (428)
T PRK01029 234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID 313 (428)
T ss_pred cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECc
Confidence 56899999998876543 223445776653 22233333333446789999999888766 46655555 443
Q ss_pred C-CceeEEecCCCCCeeEEEEcCCCCEEEEEECC---CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEEC--
Q 006220 494 R-IQPLRIMAGHLSDVDCVRWHINCNYIATGSSD---KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE-- 567 (656)
Q Consensus 494 ~-~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d---g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~-- 567 (656)
. +...+.+..+...+....|+|+|+.|+..+.+ ..|.+||+.+++..... .....+....|+|||++|+..+.
T Consensus 314 ~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpDG~~L~f~~~~~ 392 (428)
T PRK01029 314 PEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWAIDSLHLVYSAGNS 392 (428)
T ss_pred ccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEECCCCCEEEEEECCC
Confidence 2 23344455455667889999999999876543 36999999988765443 33445678999999998875443
Q ss_pred -CCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCC
Q 006220 568 -DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEG 601 (656)
Q Consensus 568 -dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~ 601 (656)
.+.|.+||+..++.. .+....+.+...+|+|-.
T Consensus 393 g~~~L~~vdl~~g~~~-~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 393 NESELYLISLITKKTR-KIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CCceEEEEECCCCCEE-EeecCCCcccCceecCCC
Confidence 356889998776643 333344556778888753
No 245
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=3.1e-10 Score=123.16 Aligned_cols=202 Identities=17% Similarity=0.152 Sum_probs=132.8
Q ss_pred CccCEEEEEEccCCCE--E-EEEeCCC--eEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC-CC----cEEE
Q 006220 420 HSGPVYSASFSPLGDF--I-LSSSADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DR----TARI 489 (656)
Q Consensus 420 h~~~V~~l~~spd~~~--L-~s~s~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~-Dg----~i~l 489 (656)
....+.+-.|||||+. + ++...+| .|.+.++.+++.... ....+.....+|+|||+.|+..+. +| .+..
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~ 261 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQS 261 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCCEEEEEECCCCCcceeEEE
Confidence 4456677899999974 2 2444443 577788887654332 223344556899999998887653 22 3444
Q ss_pred EECCC---CceeEEecCCCCCeeEEEEcCCCCEEEEEE-CCCcEEEE--eCCC-CeeEEEEecCCCCeEEEEEcCCCCEE
Q 006220 490 WSMDR---IQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLW--DVSS-GECVRIFIGHRSMILSLAMSPDGRYM 562 (656)
Q Consensus 490 wd~~~---~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iw--d~~~-~~~~~~~~~h~~~i~~l~~sp~g~~L 562 (656)
|++.. +.+.+...++.......+|+|+|+.|+..+ .+|...+| ++.. +...+.+..+...+....|||||+.|
T Consensus 262 ~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~L 341 (428)
T PRK01029 262 FSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKI 341 (428)
T ss_pred eecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEE
Confidence 67664 233444433334456789999999888765 45655555 4432 33345555555677889999999988
Q ss_pred EEEECC---CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEEC---CCcEEEEeCCCCCc
Q 006220 563 ASGDED---GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSA---DCTVKLWDVTTSTK 623 (656)
Q Consensus 563 ~s~~~d---g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~---Dg~I~iWd~~~~~~ 623 (656)
+..+.+ ..|.+||+.+++.. .+......+.+..|+|||+.|+..+. .+.|.+||+..++.
T Consensus 342 af~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 342 AFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred EEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 876543 46999999888654 33333345678999999998875443 35688899877654
No 246
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=3.8e-10 Score=123.42 Aligned_cols=199 Identities=17% Similarity=0.170 Sum_probs=131.9
Q ss_pred EeecCccCEEEEEEccCCCEEEEEeCC---CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEE-EECCCc--EEE
Q 006220 416 LYQGHSGPVYSASFSPLGDFILSSSAD---TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFAS-SSHDRT--ARI 489 (656)
Q Consensus 416 ~l~~h~~~V~~l~~spd~~~L~s~s~D---g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s-gs~Dg~--i~l 489 (656)
.+..+...+.+..|+|||+.|+..+.+ ..|.+||+.+++... +...........|+|+|+.|+. .+.+|. |++
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence 344566788999999999988866543 358889998776432 2222233446899999998765 456664 777
Q ss_pred EECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEEC-CC--cEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 006220 490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DK--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGD 566 (656)
Q Consensus 490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg--~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~ 566 (656)
||+.+++... +..+.......+|+|+|+.|+..+. ++ .|+++|+.+++..+.. .+.......+|+|||++|+..+
T Consensus 291 ~dl~tg~~~~-lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 291 VDIATKALTR-ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred EECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcCeeECCCCCEEEEEE
Confidence 8888765443 4445556678899999998877654 33 5777788877755432 2223344578999999888765
Q ss_pred C-CC--cEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECC-C--cEEEEeCC
Q 006220 567 E-DG--TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD-C--TVKLWDVT 619 (656)
Q Consensus 567 ~-dg--~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~D-g--~I~iWd~~ 619 (656)
. ++ .|.++|+.++... .+... .......|+|+|+.|+..+.+ | .+.+++..
T Consensus 369 ~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 369 RTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred ecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 4 33 4666788777543 23222 122345799999988776644 3 36677764
No 247
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=3.6e-11 Score=125.32 Aligned_cols=212 Identities=16% Similarity=0.210 Sum_probs=159.7
Q ss_pred ecCccCEEEEEEccCCCEE-EEEeCCCeEEEEeccCCcee---------EE-------------------eeCCC-----
Q 006220 418 QGHSGPVYSASFSPLGDFI-LSSSADTTIRLWSTKLNANL---------VC-------------------YKGHN----- 463 (656)
Q Consensus 418 ~~h~~~V~~l~~spd~~~L-~s~s~Dg~I~lwd~~~~~~~---------~~-------------------~~~h~----- 463 (656)
.+|+...+.|..+|||+++ ++|..--.|++||+..-... .. +.-|.
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h 127 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH 127 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCee
Confidence 4678888999999999986 56777888999997632110 00 00110
Q ss_pred ------ccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 464 ------YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG 537 (656)
Q Consensus 464 ------~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~ 537 (656)
..-.+++++.-..-+++++....|+-++++.+.-+..+....+.+++|..++-..+|++|+.+|.|..||.++.
T Consensus 128 y~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k 207 (703)
T KOG2321|consen 128 YRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK 207 (703)
T ss_pred eeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhh
Confidence 11234445443344666666778999999999999999888899999999999999999999999999999987
Q ss_pred eeEEEEe------cCCC-----CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeee-CCCccEEEEEEcCC--CCE
Q 006220 538 ECVRIFI------GHRS-----MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-GHTSCVWTLAYSCE--GSL 603 (656)
Q Consensus 538 ~~~~~~~------~h~~-----~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~-~h~~~V~~l~~s~~--~~~ 603 (656)
..+..+. .|.+ .|+++.|+.+|-.+++|+.+|.|.|||+++.+++..-. +..-+|..+.|.+. +..
T Consensus 208 srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~ 287 (703)
T KOG2321|consen 208 SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNK 287 (703)
T ss_pred hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCce
Confidence 7665543 2333 49999999999999999999999999999988775432 33468999999775 345
Q ss_pred EEEEECCCcEEEEeCCCCCceeecccc
Q 006220 604 LASGSADCTVKLWDVTTSTKVLKTEEK 630 (656)
Q Consensus 604 l~sgs~Dg~I~iWd~~~~~~~~~~~~~ 630 (656)
++|. ....++|||-.+++.....+..
T Consensus 288 v~S~-Dk~~~kiWd~~~Gk~~asiEpt 313 (703)
T KOG2321|consen 288 VVSM-DKRILKIWDECTGKPMASIEPT 313 (703)
T ss_pred EEec-chHHhhhcccccCCceeecccc
Confidence 5554 3458999999999988766554
No 248
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=1.8e-10 Score=126.07 Aligned_cols=219 Identities=15% Similarity=0.084 Sum_probs=141.4
Q ss_pred eeCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220 348 INTHNGLNCASISQDGSLVAGGFS-DS--SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (656)
Q Consensus 348 ~~~~~~V~~l~fs~dg~~La~g~~-dg--~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 424 (656)
......+.+..|||||+.|+..+. ++ .|.+||+.+... ... ....+..
T Consensus 214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--------------------------~~l---t~~~g~~ 264 (448)
T PRK04792 214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--------------------------EKV---TSFPGIN 264 (448)
T ss_pred ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--------------------------EEe---cCCCCCc
Confidence 344556789999999999987654 33 477777654211 111 1112233
Q ss_pred EEEEEccCCCEEEE-EeCCCe--EEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC-CC--cEEEEECCCCcee
Q 006220 425 YSASFSPLGDFILS-SSADTT--IRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DR--TARIWSMDRIQPL 498 (656)
Q Consensus 425 ~~l~~spd~~~L~s-~s~Dg~--I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~-Dg--~i~lwd~~~~~~~ 498 (656)
....|+|||+.|+. .+.+|. |.+||+.+++. ..+..+.......+|+|+|+.++..+. ++ .|+++|+.+++..
T Consensus 265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~ 343 (448)
T PRK04792 265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS 343 (448)
T ss_pred CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 46799999997764 556665 77778876654 334445555677899999998877663 33 5667788777654
Q ss_pred EEecCCCCCeeEEEEcCCCCEEEEEECC-C--cEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEEC-CC--cEE
Q 006220 499 RIMAGHLSDVDCVRWHINCNYIATGSSD-K--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE-DG--TIM 572 (656)
Q Consensus 499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~d-g--~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~-dg--~I~ 572 (656)
+... ........+|+|+|++|+..+.+ + .|.++|+.++.... +... .......|+|+|++|+..+. +| .+.
T Consensus 344 ~Lt~-~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~ 420 (448)
T PRK04792 344 RLTF-EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLA 420 (448)
T ss_pred EEec-CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEE
Confidence 4322 22223457899999999876553 3 46667888776543 3322 12234589999998876553 33 377
Q ss_pred EEeCCCCeeeEeeeCCCccEEEEEEcCC
Q 006220 573 MWDLASGRCVTPLMGHTSCVWTLAYSCE 600 (656)
Q Consensus 573 iwD~~~~~~~~~~~~h~~~V~~l~~s~~ 600 (656)
+++. +|.....+..+.+.+...+|+|-
T Consensus 421 ~~~~-~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 421 AVSI-DGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred EEEC-CCCceEECcCCCCCcCCCccCCC
Confidence 7786 56666667666667778888873
No 249
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=1.8e-10 Score=120.23 Aligned_cols=111 Identities=18% Similarity=0.346 Sum_probs=90.7
Q ss_pred CCCeeEEEEcCCCCEEEE--EECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEEC---CCcEEEEeCCCC
Q 006220 505 LSDVDCVRWHINCNYIAT--GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE---DGTIMMWDLASG 579 (656)
Q Consensus 505 ~~~V~~v~~~p~~~~l~t--gs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~---dg~I~iwD~~~~ 579 (656)
.++|.++.|+|+++-+++ |-.-.++.|||++ +.++..| ..++-+++-|+|.|++|+.+|- -|.|-|||+.+.
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~ 346 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR 346 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccch
Confidence 578999999999977655 6677899999975 5555544 4578889999999999988774 488999999998
Q ss_pred eeeEeeeCCCccEEEEEEcCCCCEEEEEEC------CCcEEEEeCCC
Q 006220 580 RCVTPLMGHTSCVWTLAYSCEGSLLASGSA------DCTVKLWDVTT 620 (656)
Q Consensus 580 ~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~------Dg~I~iWd~~~ 620 (656)
+++..+..-.. +-+.|+|||++++|++. |+.++||+...
T Consensus 347 K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 347 KLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred hhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 88888765443 45789999999999874 68999999864
No 250
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.31 E-value=3.4e-10 Score=119.18 Aligned_cols=145 Identities=17% Similarity=0.187 Sum_probs=127.0
Q ss_pred CCCEEEEEeCCCeEEEEeccCCceeEEee--CCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCee
Q 006220 432 LGDFILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVD 509 (656)
Q Consensus 432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~ 509 (656)
+...++-|...|.|.+|++..++....+. +|.++|.++.++.+-..|.+++.|+.+..|+......++.+.+....+.
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~ 148 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVS 148 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccc
Confidence 34468888999999999999888776665 5899999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCC-----CCEEEEE-ECCCcEEEEeCCC
Q 006220 510 CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD-----GRYMASG-DEDGTIMMWDLAS 578 (656)
Q Consensus 510 ~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~-----g~~L~s~-~~dg~I~iwD~~~ 578 (656)
+++.+|+|..+++++ +.|.+||+.+++.+..|.||.++|.++.|-.+ |.++.++ ..+.-|.+|-+..
T Consensus 149 sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 149 SLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred eEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999999999999986 68999999999999999999999999999876 6666654 4555677886543
No 251
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.31 E-value=1.5e-10 Score=114.16 Aligned_cols=202 Identities=19% Similarity=0.357 Sum_probs=152.8
Q ss_pred eCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEE
Q 006220 349 NTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (656)
Q Consensus 349 ~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 428 (656)
....+++++.++++...|.+|...|++.-+.+...- ......+.+..|.++|..+-
T Consensus 66 ~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedf------------------------nkm~~~r~~~~h~~~v~~~i 121 (404)
T KOG1409|consen 66 YMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDF------------------------NKMTFLKDYLAHQARVSAIV 121 (404)
T ss_pred hCCCCceEeeeeccceEEEEEEecceEEEEEhhhhh------------------------hhcchhhhhhhhhcceeeEE
Confidence 346779999999999999999999999988876411 11223455678999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEEC--CCCceeEEecCCCC
Q 006220 429 FSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSM--DRIQPLRIMAGHLS 506 (656)
Q Consensus 429 ~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~--~~~~~~~~~~~~~~ 506 (656)
|+-...++++++.|..+.---.+.+..+..|.-. .+..++.+.-. +...|...|.+....+ ..-.++..+.+|.+
T Consensus 122 f~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~-~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~ 198 (404)
T KOG1409|consen 122 FSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE-TPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTG 198 (404)
T ss_pred ecCCceeEEEeccccceEEEeeccCCcccceEee-ccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCccc
Confidence 9999999999999987665555555444333211 11112222211 5566666676666554 34567788899999
Q ss_pred CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee-EEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (656)
Q Consensus 507 ~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~-~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~ 577 (656)
.+.+++|.|....+++|..|..|.+||+-..+- .....+|...|..+...+.-+.+.+++.||.|.+|+++
T Consensus 199 ~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 199 EVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred ceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 999999999999999999999999999975443 34567899999999888888999999999999999975
No 252
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.31 E-value=1.2e-08 Score=102.28 Aligned_cols=252 Identities=12% Similarity=0.190 Sum_probs=169.3
Q ss_pred EeeCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC
Q 006220 347 FINTHNGLNCASISQDGSLVAGGFS---DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP 423 (656)
Q Consensus 347 ~~~~~~~V~~l~fs~dg~~La~g~~---dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 423 (656)
.....+..+=++|+|++++|-++-. +|.|-.|.++... +..........-..+
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~------------------------G~Lt~ln~~~~~g~~ 90 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD------------------------GRLTFLNRQTLPGSP 90 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCC------------------------CeEEEeeccccCCCC
Confidence 4455667888999999998887754 5778888877421 000111111111123
Q ss_pred EEEEEEccCCCEEEEEeC-CCeEEEEeccCCceeE---EeeCCCcc----------EEEEEEecCCCEEEEEEC-CCcEE
Q 006220 424 VYSASFSPLGDFILSSSA-DTTIRLWSTKLNANLV---CYKGHNYP----------VWDVQFNPQGHYFASSSH-DRTAR 488 (656)
Q Consensus 424 V~~l~~spd~~~L~s~s~-Dg~I~lwd~~~~~~~~---~~~~h~~~----------V~~l~~sp~~~~l~sgs~-Dg~i~ 488 (656)
-+.+++++++++|+++.. -|.|.++-++....+. ....|.++ +....+.|++++++++.- --.|.
T Consensus 91 p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~ 170 (346)
T COG2706 91 PCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIF 170 (346)
T ss_pred CeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEE
Confidence 378999999999988875 5789999986532221 22234444 888999999999998872 34689
Q ss_pred EEECCCCceeEEe---cCCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCC-eeEEEEec---------CCCCeEEEE
Q 006220 489 IWSMDRIQPLRIM---AGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSG-ECVRIFIG---------HRSMILSLA 554 (656)
Q Consensus 489 lwd~~~~~~~~~~---~~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~-~~~~~~~~---------h~~~i~~l~ 554 (656)
+|+++.++....- .........|.|||++++.++.+ -+++|-+|..... ..+..++. -......|.
T Consensus 171 ~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh 250 (346)
T COG2706 171 LYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH 250 (346)
T ss_pred EEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE
Confidence 9999866533211 13345678899999999987766 4899999998873 22222221 124577899
Q ss_pred EcCCCCEEEEEE-CCCcEEEEeCCC--Cee--eEeeeCCCccEEEEEEcCCCCEEEEEECC-CcEEEEeCCCCC
Q 006220 555 MSPDGRYMASGD-EDGTIMMWDLAS--GRC--VTPLMGHTSCVWTLAYSCEGSLLASGSAD-CTVKLWDVTTST 622 (656)
Q Consensus 555 ~sp~g~~L~s~~-~dg~I~iwD~~~--~~~--~~~~~~h~~~V~~l~~s~~~~~l~sgs~D-g~I~iWd~~~~~ 622 (656)
++|||++|.++. ....|.+|.+.. +++ +.....+......+.|++.|++|+++..+ .+|.+|.+...+
T Consensus 251 is~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 251 ISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred ECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 999999999875 234788887753 322 22222344456899999999999998865 468899886644
No 253
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.30 E-value=4.3e-11 Score=132.90 Aligned_cols=195 Identities=24% Similarity=0.316 Sum_probs=152.8
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEE
Q 006220 357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI 436 (656)
Q Consensus 357 l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L 436 (656)
..+.-+...++.++.+..+.+|+............ . ....+ .+..-+-++++.-++
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~-------------------~-er~~l----~~~~~~g~s~~~~~i 148 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQS-------------------D-ERCTL----YSSLIIGDSAEELYI 148 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehhcCC-------------------C-ceEEE----EeEEEEeccCcEEEE
Confidence 44556777889999999999999875221110000 0 00000 112223456666789
Q ss_pred EEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeE-EecCCCCCeeEEEEcC
Q 006220 437 LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR-IMAGHLSDVDCVRWHI 515 (656)
Q Consensus 437 ~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~-~~~~~~~~V~~v~~~p 515 (656)
++|+.-+.|.+|+.........+.+|.+.|.++.|+.+|++++++|.|+++++|++++.+... ..-+|...|..+.|+|
T Consensus 149 ~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~ 228 (967)
T KOG0974|consen 149 ASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP 228 (967)
T ss_pred EeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc
Confidence 999999999999988444444688999999999999999999999999999999999987776 5568999999999999
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCC-CeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 516 NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-MILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (656)
Q Consensus 516 ~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~-~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~ 578 (656)
+ .++|++.|.++++|+.. +..+..+.+|.+ .|..++..++...++|++.||.+++||+..
T Consensus 229 n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 229 N--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred c--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 8 99999999999999754 555557888865 689999999999999999999999999753
No 254
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=1.3e-09 Score=116.21 Aligned_cols=257 Identities=15% Similarity=0.208 Sum_probs=171.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (656)
Q Consensus 350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 429 (656)
.+..+.|++|+....++|+|+.||.++|..+.+........+ +...........+.||.+.|.-+.|
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-------------laa~snLsmNQtLeGH~~sV~vvTW 79 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG-------------LAAASNLSMNQTLEGHNASVMVVTW 79 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc-------------cccccccchhhhhccCcceEEEEEe
Confidence 345689999999999999999999999999875322111111 0011112334568899999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEeccCCceeEEe--eCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee---------
Q 006220 430 SPLGDFILSSSADTTIRLWSTKLNANLVCY--KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL--------- 498 (656)
Q Consensus 430 spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~--~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~--------- 498 (656)
+...+.|-+...+|-|.+|-+-.+.-...+ ....+-|.+++|+.+|..++..-.||.|.+=.++.....
T Consensus 80 Ne~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l 159 (1189)
T KOG2041|consen 80 NENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLL 159 (1189)
T ss_pred ccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchhec
Confidence 999999999999999999987655432211 224566889999999988888777777665444321100
Q ss_pred -------------------------------------------EEecCCCCCeeEEEEc--------CCCCEEEEEECCC
Q 006220 499 -------------------------------------------RIMAGHLSDVDCVRWH--------INCNYIATGSSDK 527 (656)
Q Consensus 499 -------------------------------------------~~~~~~~~~V~~v~~~--------p~~~~l~tgs~dg 527 (656)
..+......+..+.|. |+...++++-.+|
T Consensus 160 ~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nG 239 (1189)
T KOG2041|consen 160 AHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANG 239 (1189)
T ss_pred cceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCc
Confidence 0011111123344443 4556677777777
Q ss_pred cEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC---------CcEEEEeCCCCeeeEeeeCCCccEEEEEEc
Q 006220 528 TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED---------GTIMMWDLASGRCVTPLMGHTSCVWTLAYS 598 (656)
Q Consensus 528 ~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d---------g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s 598 (656)
.+.|..-.+......+. ..-.+..+.|+++|..|+.+|.+ +.|.+|. .-|+.+.+++.....|++++|-
T Consensus 240 r~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWE 317 (1189)
T KOG2041|consen 240 RMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWE 317 (1189)
T ss_pred eehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEc
Confidence 77665443322222221 22567889999999999998854 3566665 4688888888888999999998
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCC
Q 006220 599 CEGSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 599 ~~~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
..|-.++.+ .|+.|.+=+++..-
T Consensus 318 g~gLriA~A-vdsfiyfanIRP~y 340 (1189)
T KOG2041|consen 318 GTGLRIAIA-VDSFIYFANIRPEY 340 (1189)
T ss_pred CCceEEEEE-ecceEEEEeecccc
Confidence 766555544 57788877776543
No 255
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.28 E-value=1.9e-09 Score=114.22 Aligned_cols=192 Identities=13% Similarity=0.166 Sum_probs=138.8
Q ss_pred EEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcC
Q 006220 436 ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHI 515 (656)
Q Consensus 436 L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p 515 (656)
+++-..+|.|.+.|..+.+.+..+......-..+.|+|+|+++++++.||.|.++|+.+.+.+..+... ....++++++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~ 87 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSP 87 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcC
Confidence 356667899999999999999998865544456789999999999999999999999999999888754 4568899999
Q ss_pred CCCEEEEEE-CCCcEEEEeCCCCeeEEEEecC-------CCCeEEEEEcCCCCEEE-EEECCCcEEEEeCCCCeeeE-ee
Q 006220 516 NCNYIATGS-SDKTVRLWDVSSGECVRIFIGH-------RSMILSLAMSPDGRYMA-SGDEDGTIMMWDLASGRCVT-PL 585 (656)
Q Consensus 516 ~~~~l~tgs-~dg~V~iwd~~~~~~~~~~~~h-------~~~i~~l~~sp~g~~L~-s~~~dg~I~iwD~~~~~~~~-~~ 585 (656)
+|+++++++ .++.+.++|.++.+.++.+... .+.+..|..+|.+..++ +.-+.+.|.+.|....+.+. ..
T Consensus 88 DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~ 167 (369)
T PF02239_consen 88 DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT 167 (369)
T ss_dssp TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE
T ss_pred CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee
Confidence 999999876 6899999999999999877543 34678888899888554 44555889888987654332 22
Q ss_pred eCCCccEEEEEEcCCCCEEEEE-ECCCcEEEEeCCCCCceeecc
Q 006220 586 MGHTSCVWTLAYSCEGSLLASG-SADCTVKLWDVTTSTKVLKTE 628 (656)
Q Consensus 586 ~~h~~~V~~l~~s~~~~~l~sg-s~Dg~I~iWd~~~~~~~~~~~ 628 (656)
...........|+|++++++.+ ..++.|-++|..+.+......
T Consensus 168 i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 168 IKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALID 211 (369)
T ss_dssp EE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred ecccccccccccCcccceeeecccccceeEEEeeccceEEEEee
Confidence 2334567789999999987665 466789999999887665443
No 256
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.24 E-value=2.8e-11 Score=139.84 Aligned_cols=197 Identities=15% Similarity=0.274 Sum_probs=158.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (656)
Q Consensus 350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 429 (656)
+-..|.|+.=+|...+-++|+.||.|++|....... .+..-......|+.+.|
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~---------------------------v~~~rt~g~s~vtr~~f 2259 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ---------------------------VVCFRTAGNSRVTRSRF 2259 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCe---------------------------EEEeeccCcchhhhhhh
Confidence 335688888889999999999999999999764211 11111223388999999
Q ss_pred ccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEE---CCCcEEEEECCCC-ceeEEecCCC
Q 006220 430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS---HDRTARIWSMDRI-QPLRIMAGHL 505 (656)
Q Consensus 430 spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs---~Dg~i~lwd~~~~-~~~~~~~~~~ 505 (656)
+.+|+.+..+..||.+.+|.+. .......+.|+....++.|-. ..+++++ .++.+.+||+--. ..-.+-..|.
T Consensus 2260 ~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~ 2336 (2439)
T KOG1064|consen 2260 NHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHD 2336 (2439)
T ss_pred cccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecC
Confidence 9999999999999999999988 666777888999999999975 6677775 5789999997532 1122226899
Q ss_pred CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEee
Q 006220 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL 585 (656)
Q Consensus 506 ~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~ 585 (656)
+.++++++-|..+.|++|+.+|.|.+||++..+..+.+.. +. ...++++|+..|.|+||++..-..++.+
T Consensus 2337 ~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2337 GGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred CCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcC
Confidence 9999999999999999999999999999998887776654 33 5679999999999999999887777666
Q ss_pred e
Q 006220 586 M 586 (656)
Q Consensus 586 ~ 586 (656)
.
T Consensus 2407 p 2407 (2439)
T KOG1064|consen 2407 P 2407 (2439)
T ss_pred c
Confidence 4
No 257
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.22 E-value=5.3e-11 Score=137.66 Aligned_cols=197 Identities=20% Similarity=0.359 Sum_probs=163.8
Q ss_pred EeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeC-CCccEEEEEEecCCCEEEEEECCCcEEEEECCC
Q 006220 416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR 494 (656)
Q Consensus 416 ~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~ 494 (656)
....|-..|.++.-+|...+.++|+.||.|++|....+..+.+++. .+..|+.+.|+.+|+.+..+..||.+.+|.+.
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence 3445567788899999999999999999999999998888887763 34789999999999999999999999999987
Q ss_pred CceeEEecCCCCCeeEEEEcCCCCEEEEEE---CCCcEEEEeCCCC---eeEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 006220 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGS---SDKTVRLWDVSSG---ECVRIFIGHRSMILSLAMSPDGRYMASGDED 568 (656)
Q Consensus 495 ~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs---~dg~V~iwd~~~~---~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d 568 (656)
.++......|......+.|-. ..+++++ .++.+.+||..-. .++. +.|.+.++++++.|..+.|++||.+
T Consensus 2282 pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCc
Confidence 677777788888888888865 4566643 5689999997532 2344 7899999999999999999999999
Q ss_pred CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220 569 GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 569 g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
|.|++||++..+..+.++. +. ...++++|+..|.|+||++.....+...
T Consensus 2358 G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred CcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcC
Confidence 9999999998887776654 44 5678999999999999999887555443
No 258
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.22 E-value=3.5e-10 Score=111.43 Aligned_cols=228 Identities=22% Similarity=0.340 Sum_probs=151.5
Q ss_pred CCCCeEEEEEcCCCC--EEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCC----CccccCCCC---CceeeE-Eeec
Q 006220 350 THNGLNCASISQDGS--LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTP----REDIIGPNG---RKRSYT-LYQG 419 (656)
Q Consensus 350 ~~~~V~~l~fs~dg~--~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---~~~~~~-~l~~ 419 (656)
-...|+.+.|.++++ .+...+.|.+|++|.+.................... ......+-. .....+ .-.+
T Consensus 83 ieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNa 162 (433)
T KOG1354|consen 83 IEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANA 162 (433)
T ss_pred hhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeecccc
Confidence 345688889988754 466677999999999986443331111111111100 000110000 001111 2346
Q ss_pred CccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCc---eeEEeeCCC-----ccEEEEEEec-CCCEEEEEECCCcEEEE
Q 006220 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA---NLVCYKGHN-----YPVWDVQFNP-QGHYFASSSHDRTARIW 490 (656)
Q Consensus 420 h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~---~~~~~~~h~-----~~V~~l~~sp-~~~~l~sgs~Dg~i~lw 490 (656)
|+-.|.+++++.|+..++++. |=.|.+|++.-.. .++-++.+. .-|++..|+| ..+.|+-.+..|+|++.
T Consensus 163 HtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLc 241 (433)
T KOG1354|consen 163 HTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLC 241 (433)
T ss_pred ceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence 889999999999999998875 5679999986332 244445443 3488889999 45678888899999999
Q ss_pred ECCCCc----------------eeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeC-CCCeeEEEEecCCC-----
Q 006220 491 SMDRIQ----------------PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDV-SSGECVRIFIGHRS----- 548 (656)
Q Consensus 491 d~~~~~----------------~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~-~~~~~~~~~~~h~~----- 548 (656)
|++... ....+.+-.+.|..+.|+++|+|+++-+. -+|.+||+ ...+++.+++-|..
T Consensus 242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kL 320 (433)
T KOG1354|consen 242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKL 320 (433)
T ss_pred echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHH
Confidence 998421 11222334466889999999999988543 58999999 45677777765532
Q ss_pred -------Ce---EEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 549 -------MI---LSLAMSPDGRYMASGDEDGTIMMWDLASG 579 (656)
Q Consensus 549 -------~i---~~l~~sp~g~~L~s~~~dg~I~iwD~~~~ 579 (656)
.| ..++|+-++.+++||+..+..++++...|
T Consensus 321 c~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 321 CSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred HHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 12 34789988899999999999999996544
No 259
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.22 E-value=1.2e-09 Score=105.83 Aligned_cols=196 Identities=20% Similarity=0.258 Sum_probs=142.9
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEeccCCce--eEEeeCCCccEEEEEEec-CCCEEEEEECCCcEEEEECCCCc-eeE
Q 006220 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNAN--LVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDRIQ-PLR 499 (656)
Q Consensus 424 V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~--~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~lwd~~~~~-~~~ 499 (656)
..++.|++.+..++++..+|.+.+-+...... ++..+.|..++|...|+. +.+.+.+||.|+.+..||++..+ .+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 45788999999999999999999666554433 347889999999999987 45789999999999999999433 222
Q ss_pred E-ecCCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCC-CeeEEEEecCCCCeEEEEEcCC--CCEEEEEECCCcEEEE
Q 006220 500 I-MAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPD--GRYMASGDEDGTIMMW 574 (656)
Q Consensus 500 ~-~~~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~-~~~~~~~~~h~~~i~~l~~sp~--g~~L~s~~~dg~I~iw 574 (656)
. ...|...|.++.-+| .+.+|+||+.|-.|++||.|+ ++++..- .-.+.|..+.++|. ++.|+++-..| .+|-
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~ 281 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPEIFHRLLAACMHNG-AKIL 281 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC-ccccceEEEEecchhhhHHHHHHHhcC-ceEE
Confidence 2 346888999998885 678999999999999999994 5655432 23478999999994 34455554444 5555
Q ss_pred eCCCC--e---eeEeeeCCCccEEEEEEcCCCCEEEEEE-CCCcEE-EEeCCCC
Q 006220 575 DLASG--R---CVTPLMGHTSCVWTLAYSCEGSLLASGS-ADCTVK-LWDVTTS 621 (656)
Q Consensus 575 D~~~~--~---~~~~~~~h~~~V~~l~~s~~~~~l~sgs-~Dg~I~-iWd~~~~ 621 (656)
+...+ + .....+.|.+-++.-.|......|+|++ .|..++ +|-.-++
T Consensus 282 ~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 282 DSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred EecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 65443 2 3344456777777788855556788876 566655 7765544
No 260
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=2.2e-10 Score=117.59 Aligned_cols=215 Identities=23% Similarity=0.329 Sum_probs=150.8
Q ss_pred eeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEee-CCCccEEEEEEec--CCCEEEEEECCCcEEE
Q 006220 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNP--QGHYFASSSHDRTARI 489 (656)
Q Consensus 413 ~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~l~~sp--~~~~l~sgs~Dg~i~l 489 (656)
....+.+|.|.|..|.|+..|..|++||.|..|.+||...+.....+. +|...|....|-| +...+++++.||.+++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 345678899999999999999999999999999999999888776664 6888898888988 4567999999999998
Q ss_pred EECCCCcee---EEecCCCCCeeEEEEcCC--------------------------------------------------
Q 006220 490 WSMDRIQPL---RIMAGHLSDVDCVRWHIN-------------------------------------------------- 516 (656)
Q Consensus 490 wd~~~~~~~---~~~~~~~~~V~~v~~~p~-------------------------------------------------- 516 (656)
=.+.....+ ..+..|.++|.-++.-|.
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 776432222 122234444443333332
Q ss_pred CCEEEEEECCCcEEEEeCCCCe------eEEEEecC------CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC--C---
Q 006220 517 CNYIATGSSDKTVRLWDVSSGE------CVRIFIGH------RSMILSLAMSPDGRYMASGDEDGTIMMWDLAS--G--- 579 (656)
Q Consensus 517 ~~~l~tgs~dg~V~iwd~~~~~------~~~~~~~h------~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~--~--- 579 (656)
.+.+++|+.|-.+++||.+.-. .+..|..| ...|+|++|+.++.-|.++-.|-.|+++.-.. |
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p 373 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEP 373 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCC
Confidence 2345555556666666654311 11222222 23689999998888777777888899994322 2
Q ss_pred -------eeeEe-eeCCC--ccEEEEEE-cCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220 580 -------RCVTP-LMGHT--SCVWTLAY-SCEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 580 -------~~~~~-~~~h~--~~V~~l~~-s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
..+.. +++|. ..|..+-| -|...++++|+.=|.|.||+-.+++-+.-.
T Consensus 374 ~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~M 432 (559)
T KOG1334|consen 374 DPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFM 432 (559)
T ss_pred CCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHh
Confidence 22333 67886 35666664 788899999999999999999887765544
No 261
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.19 E-value=1.6e-08 Score=120.65 Aligned_cols=252 Identities=15% Similarity=0.192 Sum_probs=162.6
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCC
Q 006220 355 NCASISQD-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG 433 (656)
Q Consensus 355 ~~l~fs~d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~ 433 (656)
..++++++ +.++++-+.++.|++||........... .+.... .++.. -.++-....++++++++
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~--~g~~G~--------~dG~~-----~~a~f~~P~GIavd~~g 635 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGS--TGEEGL--------RDGSF-----EDATFNRPQGLAYNAKK 635 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEcc--CCCcCC--------CCCch-----hccccCCCcEEEEeCCC
Confidence 35688874 6677777788999999976421111000 000000 00000 00122345789999988
Q ss_pred CEEEEEe-CCCeEEEEeccCCceeEEeeCC-----------------CccEEEEEEec-CCCEEEEEECCCcEEEEECCC
Q 006220 434 DFILSSS-ADTTIRLWSTKLNANLVCYKGH-----------------NYPVWDVQFNP-QGHYFASSSHDRTARIWSMDR 494 (656)
Q Consensus 434 ~~L~s~s-~Dg~I~lwd~~~~~~~~~~~~h-----------------~~~V~~l~~sp-~~~~l~sgs~Dg~i~lwd~~~ 494 (656)
..|+.+. ..+.|+++|..++. +..+.+. -..-++++++| ++..+++.+.++.|++||..+
T Consensus 636 n~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~ 714 (1057)
T PLN02919 636 NLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISD 714 (1057)
T ss_pred CEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCC
Confidence 8665554 45789999987654 3322110 11236899999 566667777889999999877
Q ss_pred CceeEEecCC---------------CCCeeEEEEcCCCCEEE-EEECCCcEEEEeCCCCeeEEEEec-------------
Q 006220 495 IQPLRIMAGH---------------LSDVDCVRWHINCNYIA-TGSSDKTVRLWDVSSGECVRIFIG------------- 545 (656)
Q Consensus 495 ~~~~~~~~~~---------------~~~V~~v~~~p~~~~l~-tgs~dg~V~iwd~~~~~~~~~~~~------------- 545 (656)
+... .+.+. ......++++|++.+|+ +.+.++.|++||+.++.......+
T Consensus 715 g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~ 793 (1057)
T PLN02919 715 GVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGD 793 (1057)
T ss_pred CeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccC
Confidence 6432 22211 12356799999998555 455678999999987653211100
Q ss_pred C--------CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeee-C------------CCccEEEEEEcCCCCEE
Q 006220 546 H--------RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-G------------HTSCVWTLAYSCEGSLL 604 (656)
Q Consensus 546 h--------~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~-~------------h~~~V~~l~~s~~~~~l 604 (656)
+ -.....++++++|..+++-+.++.|++||..++....... + .-.....++++++|+++
T Consensus 794 ~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~ly 873 (1057)
T PLN02919 794 HDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLF 873 (1057)
T ss_pred CCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEE
Confidence 0 0123578999999988888899999999998776543221 1 11246789999999999
Q ss_pred EEEECCCcEEEEeCCCCCc
Q 006220 605 ASGSADCTVKLWDVTTSTK 623 (656)
Q Consensus 605 ~sgs~Dg~I~iWd~~~~~~ 623 (656)
++-+.++.|++||+.++..
T Consensus 874 VaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 874 VADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEECCCCEEEEEECCCCcc
Confidence 9999999999999988764
No 262
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.19 E-value=2.4e-09 Score=103.70 Aligned_cols=201 Identities=17% Similarity=0.211 Sum_probs=144.1
Q ss_pred ccCEEEEEEcc---CCC-EEEEEeCCCeEEEEeccCCceeEEeeCCC------ccEEEEEEecCCCEEEEEECCCcEEEE
Q 006220 421 SGPVYSASFSP---LGD-FILSSSADTTIRLWSTKLNANLVCYKGHN------YPVWDVQFNPQGHYFASSSHDRTARIW 490 (656)
Q Consensus 421 ~~~V~~l~~sp---d~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~------~~V~~l~~sp~~~~l~sgs~Dg~i~lw 490 (656)
++.+..+.|.- +|. .++-+..+|.|.++..........+++-. ....++.|++.+..++++..+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 34566677753 344 46677778999999877555444444321 124578899999999999999999966
Q ss_pred ECCCCce--eEEecCCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCC-CCeeEEE-EecCCCCeEEEEEcC-CCCEEEE
Q 006220 491 SMDRIQP--LRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVS-SGECVRI-FIGHRSMILSLAMSP-DGRYMAS 564 (656)
Q Consensus 491 d~~~~~~--~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~-~~~~~~~-~~~h~~~i~~l~~sp-~g~~L~s 564 (656)
+...... +....+|.-......|+. +.+.+++|+.|+.+..||+| .++.+.. .+-|...|.+|.-+| .+.+|++
T Consensus 149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~T 228 (339)
T KOG0280|consen 149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIAT 228 (339)
T ss_pred ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEE
Confidence 6554433 347778999999999885 44788999999999999999 4444433 456888999999887 5779999
Q ss_pred EECCCcEEEEeCC-CCeeeEeeeCCCccEEEEEEcCCCC-EEEEEECCCcEEEEeCCCCC
Q 006220 565 GDEDGTIMMWDLA-SGRCVTPLMGHTSCVWTLAYSCEGS-LLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 565 ~~~dg~I~iwD~~-~~~~~~~~~~h~~~V~~l~~s~~~~-~l~sgs~Dg~I~iWd~~~~~ 622 (656)
|+.|-.|++||.+ .++++..- ...+.|+.+.++|.-. .|..++.-+-.+|-++....
T Consensus 229 GsYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~ 287 (339)
T KOG0280|consen 229 GSYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKV 287 (339)
T ss_pred eccccceeeeehhcccCccccC-ccccceEEEEecchhhhHHHHHHHhcCceEEEecccc
Confidence 9999999999998 45666543 3348999999999432 33334444446666665543
No 263
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=5.7e-11 Score=122.86 Aligned_cols=208 Identities=22% Similarity=0.323 Sum_probs=155.4
Q ss_pred eeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEecc-------CCceeEEeeCCCccEEEEEEecCCCEEEEEECC
Q 006220 412 RSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTK-------LNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD 484 (656)
Q Consensus 412 ~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~-------~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D 484 (656)
.....+.||+..|..+.--.+.+.+++++.|.+|++|+++ +..|..+|..|..+|.++-|-.+.++++++ |
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D 803 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--D 803 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--c
Confidence 3456688999999988877777889999999999999986 334778899999999999999988888765 8
Q ss_pred CcEEEEECCCCceeEEec--CCCCCeeEEEEcCC--CCEEEEE-ECCCcEEEEeCCCCeeEEEEe-----cCCCCeEEEE
Q 006220 485 RTARIWSMDRIQPLRIMA--GHLSDVDCVRWHIN--CNYIATG-SSDKTVRLWDVSSGECVRIFI-----GHRSMILSLA 554 (656)
Q Consensus 485 g~i~lwd~~~~~~~~~~~--~~~~~V~~v~~~p~--~~~l~tg-s~dg~V~iwd~~~~~~~~~~~-----~h~~~i~~l~ 554 (656)
|-|++||.-.+.++..+. ...+.+..+..-++ ...+++| +...+|+++|.+.++.+..++ +..+.+.+++
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 899999976666554322 12233333433343 3344444 678999999999987665554 3345688999
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEE-EeCCCCC
Q 006220 555 MSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL-WDVTTST 622 (656)
Q Consensus 555 ~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i-Wd~~~~~ 622 (656)
..+.|++++++-..|.|.+.|.++|+.+..++.-......++ .|..+.|+....|.++.| |-.-.+.
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgi 951 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGI 951 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCe
Confidence 999999999999999999999999998887764433333333 355567777777888877 7765544
No 264
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.16 E-value=1.1e-09 Score=106.42 Aligned_cols=245 Identities=20% Similarity=0.354 Sum_probs=168.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCc---------
Q 006220 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS--------- 421 (656)
Q Consensus 351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~--------- 421 (656)
...|+++.|...|.|||+|...|.|.+|.-.... . ...+..+.+++|.
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~-~----------------------ceykf~teFQshe~EFDYLkSl 82 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSY-G----------------------CEYKFFTEFQSHELEFDYLKSL 82 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeeccccc-c----------------------cchhhhhhhcccccchhhhhhc
Confidence 3469999999999999999989999999865321 0 0011122233332
Q ss_pred ---cCEEEEEEccCCC--EEEEEeCCCeEEEEeccCC------------------c-e------------------e---
Q 006220 422 ---GPVYSASFSPLGD--FILSSSADTTIRLWSTKLN------------------A-N------------------L--- 456 (656)
Q Consensus 422 ---~~V~~l~~spd~~--~L~s~s~Dg~I~lwd~~~~------------------~-~------------------~--- 456 (656)
..|..+.|..++. .++..+.|.+|++|.+... . . +
T Consensus 83 eieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~ 162 (460)
T COG5170 83 EIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK 162 (460)
T ss_pred cHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEec
Confidence 4577888876553 5667778999999986421 0 0 0
Q ss_pred --EEe-eCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCce---eEEecCCC-----CCeeEEEEcCC-CCEEEEEE
Q 006220 457 --VCY-KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP---LRIMAGHL-----SDVDCVRWHIN-CNYIATGS 524 (656)
Q Consensus 457 --~~~-~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~---~~~~~~~~-----~~V~~v~~~p~-~~~l~tgs 524 (656)
+.+ ..|...|.++.|+.+...++++ .|-.|.+|+++-... +.-+..|. .-|++..|||. .+.+.-.+
T Consensus 163 p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs 241 (460)
T COG5170 163 PCRVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS 241 (460)
T ss_pred cceeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec
Confidence 112 3577889999999888877776 467899999864332 22223332 34788999984 56667788
Q ss_pred CCCcEEEEeCCCCeeE----------------EEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC-eeeEeeeC
Q 006220 525 SDKTVRLWDVSSGECV----------------RIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG-RCVTPLMG 587 (656)
Q Consensus 525 ~dg~V~iwd~~~~~~~----------------~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~-~~~~~~~~ 587 (656)
+.|.|.+-|++..... .-|.+-...|..+.|+++|+++++-+. -+|+|||.+.. .+++++.-
T Consensus 242 SkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~ 320 (460)
T COG5170 242 SKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPM 320 (460)
T ss_pred CCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeech
Confidence 8999999999843211 112233457888999999999998765 58999999764 46666644
Q ss_pred CC------------ccE---EEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 588 HT------------SCV---WTLAYSCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 588 h~------------~~V---~~l~~s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
|. ..| ..+.||.|...+.+|+..+..-|+-+.+
T Consensus 321 h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 321 HCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred HHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecccc
Confidence 42 233 3478899999999999998888887544
No 265
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.16 E-value=1.3e-09 Score=107.58 Aligned_cols=249 Identities=17% Similarity=0.278 Sum_probs=182.8
Q ss_pred EeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (656)
Q Consensus 347 ~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 426 (656)
+.++.+.|+....-|...-+.+.+.|.+++||--....+ ........-..++++
T Consensus 20 ~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q--------------------------~wpsI~~~mP~~~~~ 73 (404)
T KOG1409|consen 20 IEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQ--------------------------YWPSIYHYMPSPCSA 73 (404)
T ss_pred hcCchhhhhhheeccCCCCeEEccccceeeeEEeccccc--------------------------cCchhhhhCCCCceE
Confidence 345566677777777777788999999999996443111 011112234578899
Q ss_pred EEEccCCCEEEEEeCCCeEEEEecc----CCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec
Q 006220 427 ASFSPLGDFILSSSADTTIRLWSTK----LNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA 502 (656)
Q Consensus 427 l~~spd~~~L~s~s~Dg~I~lwd~~----~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~ 502 (656)
++++++...|+.|-..|++.-+.+. ....++.+..|..+|..+.|+-....+++.+.|..+.---.+.+..+..+.
T Consensus 74 ~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~ 153 (404)
T KOG1409|consen 74 MEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN 153 (404)
T ss_pred eeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE
Confidence 9999999999999999999988764 334456677899999999999988999999998876554455544432221
Q ss_pred CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeC--CCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe
Q 006220 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDV--SSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580 (656)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~--~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~ 580 (656)
-. ..-++..+.-. +.+.|...|.|.+-.+ ..-..+..+.+|.+++++++|.|..+.|++|..|..|.+||+.-.+
T Consensus 154 ~~-~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~ 230 (404)
T KOG1409|consen 154 FE-TPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK 230 (404)
T ss_pred ee-ccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc
Confidence 00 11111122111 5566767777666544 4456788899999999999999999999999999999999996544
Q ss_pred -eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220 581 -CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624 (656)
Q Consensus 581 -~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~ 624 (656)
....+.+|...|..+..-+--+.+++++.||.|.+|+++.....
T Consensus 231 g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~e 275 (404)
T KOG1409|consen 231 GTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVE 275 (404)
T ss_pred ceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeec
Confidence 33456789999999988888889999999999999999875443
No 266
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.16 E-value=1.5e-07 Score=99.60 Aligned_cols=200 Identities=14% Similarity=0.197 Sum_probs=135.9
Q ss_pred ccCEEEEEEccCCCEEEEEeC----CCeEEEEeccCC--c--eeEEeeCCCccEEEEEEecCCCEEEEEE-CCCcEEEEE
Q 006220 421 SGPVYSASFSPLGDFILSSSA----DTTIRLWSTKLN--A--NLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWS 491 (656)
Q Consensus 421 ~~~V~~l~~spd~~~L~s~s~----Dg~I~lwd~~~~--~--~~~~~~~h~~~V~~l~~sp~~~~l~sgs-~Dg~i~lwd 491 (656)
......++++|++++|+++.. +|.|..|++... . .+..........+.++++|++.+++++. .+|++.+++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 344567889999999988877 578999998864 2 2233332344556799999999999987 589999999
Q ss_pred CCCC-ceeEE---ec----------CCCCCeeEEEEcCCCCEEEEEEC-CCcEEEEeCCCCe--eE--EEEe-cCCCCeE
Q 006220 492 MDRI-QPLRI---MA----------GHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVSSGE--CV--RIFI-GHRSMIL 551 (656)
Q Consensus 492 ~~~~-~~~~~---~~----------~~~~~V~~v~~~p~~~~l~tgs~-dg~V~iwd~~~~~--~~--~~~~-~h~~~i~ 551 (656)
++.. ..... +. .......++.|+|+++++++... ...|++|++.... .. ..+. .......
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR 195 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR 195 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence 9863 32221 21 12345789999999999888653 3579999997654 32 2222 3345678
Q ss_pred EEEEcCCCCEEEEEE-CCCcEEEEeCC--CCe--eeEeeeC----CC--ccEEEEEEcCCCCEEEEEE-CCCcEEEEeCC
Q 006220 552 SLAMSPDGRYMASGD-EDGTIMMWDLA--SGR--CVTPLMG----HT--SCVWTLAYSCEGSLLASGS-ADCTVKLWDVT 619 (656)
Q Consensus 552 ~l~~sp~g~~L~s~~-~dg~I~iwD~~--~~~--~~~~~~~----h~--~~V~~l~~s~~~~~l~sgs-~Dg~I~iWd~~ 619 (656)
.++|+|+|+++++.. .++.|.++++. .+. .+..+.. .. .....+.++|||++|.++. .+++|.+|++.
T Consensus 196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 899999999887665 57789999988 442 2222221 11 2578899999999887765 56789999995
Q ss_pred C
Q 006220 620 T 620 (656)
Q Consensus 620 ~ 620 (656)
.
T Consensus 276 ~ 276 (345)
T PF10282_consen 276 P 276 (345)
T ss_dssp T
T ss_pred c
Confidence 4
No 267
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=3.4e-10 Score=117.23 Aligned_cols=254 Identities=15% Similarity=0.227 Sum_probs=178.9
Q ss_pred CCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEe
Q 006220 338 ALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLY 417 (656)
Q Consensus 338 ~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 417 (656)
....+....|.+|.+.|..++--.+.+-+++++.|.+|++|++...+... +......++
T Consensus 722 n~~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~---------------------~tsaCQfTY 780 (1034)
T KOG4190|consen 722 NFDHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEI---------------------GTSACQFTY 780 (1034)
T ss_pred ccceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcc---------------------ccceeeeEh
Confidence 44556667788999999998877777888999999999999997522110 112244567
Q ss_pred ecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeC--CCccEEEEEEec--CCCEEEE-EECCCcEEEEEC
Q 006220 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKG--HNYPVWDVQFNP--QGHYFAS-SSHDRTARIWSM 492 (656)
Q Consensus 418 ~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~--h~~~V~~l~~sp--~~~~l~s-gs~Dg~i~lwd~ 492 (656)
..|..+|.++.|-.+.++++++ ||.|.+||.-.++.+..... ..+.+..+..-+ +...++. |+...+++++|.
T Consensus 781 ~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~Da 858 (1034)
T KOG4190|consen 781 QAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDA 858 (1034)
T ss_pred hhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeec
Confidence 8999999999999988888766 78899999876666543211 112222233323 3444444 478899999999
Q ss_pred CCCceeEEec-----CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 006220 493 DRIQPLRIMA-----GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (656)
Q Consensus 493 ~~~~~~~~~~-----~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~ 567 (656)
+.......+. +...-+.|++..+.|+.+++|-++|+|.+.|.++|+.+..+.........++ .|..+.|+....
T Consensus 859 Rsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sal 937 (1034)
T KOG4190|consen 859 RSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSAL 937 (1034)
T ss_pred ccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcc
Confidence 8876554443 4446689999999999999999999999999999999988877666555555 466678888888
Q ss_pred CCcEEE-EeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220 568 DGTIMM-WDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617 (656)
Q Consensus 568 dg~I~i-wD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd 617 (656)
|.++.+ |-.-.|....+.+....+..-+ -.-|..|+++...+.+.||.
T Consensus 938 dHslaVnWhaldgimh~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 938 DHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred cceeEeeehhcCCeeeeccCCCCcchhhh--hccCceeEEeccCcEEEEEe
Confidence 999998 9877665554444322221111 11245567776666677765
No 268
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.09 E-value=2.7e-07 Score=95.94 Aligned_cols=243 Identities=12% Similarity=0.053 Sum_probs=151.9
Q ss_pred EcCCCCEEEEEeC----------CCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEE
Q 006220 359 ISQDGSLVAGGFS----------DSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (656)
Q Consensus 359 fs~dg~~La~g~~----------dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 428 (656)
+||||+.|.++.. +..|.|||..+........... .. +.. .......++
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~---------------~p----~~~--~~~~~~~~~ 111 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE---------------GP----RFL--VGTYPWMTS 111 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC---------------Cc----hhh--ccCccceEE
Confidence 9999998887755 7889999998743322111000 00 000 112234688
Q ss_pred EccCCCEEEEEe-C-CCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeE-----Ee
Q 006220 429 FSPLGDFILSSS-A-DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR-----IM 501 (656)
Q Consensus 429 ~spd~~~L~s~s-~-Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~-----~~ 501 (656)
++|||++|+... . +..|.+.|+.+++.+..+.... +..-...++...+ +-+.||......++...... .+
T Consensus 112 ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf 188 (352)
T TIGR02658 112 LTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVF 188 (352)
T ss_pred ECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeee
Confidence 999999988766 3 6899999999999888776422 2222333322222 22345555444333211111 11
Q ss_pred cCCCCCeeE-EEEcC-CCCEEEEEECCCcEEEEeCCCC-----eeEEEEec-------CCCCeEEEEEcCCCCEEEEEE-
Q 006220 502 AGHLSDVDC-VRWHI-NCNYIATGSSDKTVRLWDVSSG-----ECVRIFIG-------HRSMILSLAMSPDGRYMASGD- 566 (656)
Q Consensus 502 ~~~~~~V~~-v~~~p-~~~~l~tgs~dg~V~iwd~~~~-----~~~~~~~~-------h~~~i~~l~~sp~g~~L~s~~- 566 (656)
.+....+.. -.|.+ +|.++++... |+|.+.|+... .....+.. ..+.+.-++++|+|+.+++..
T Consensus 189 ~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~ 267 (352)
T TIGR02658 189 HPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLAD 267 (352)
T ss_pred cCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEec
Confidence 110000000 03345 7888877776 99999996433 33333221 223344599999999888742
Q ss_pred ---------CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCC-EEEEEE-CCCcEEEEeCCCCCceeec
Q 006220 567 ---------EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS-LLASGS-ADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 567 ---------~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~-~l~sgs-~Dg~I~iWd~~~~~~~~~~ 627 (656)
..+.|.++|..+++.+..+.. ...+++++++||++ +|++.. .++.|.+.|+.+++.+...
T Consensus 268 ~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 268 QRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 225799999999999998864 34789999999999 777666 6788999999998877654
No 269
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=2.6e-08 Score=104.47 Aligned_cols=218 Identities=19% Similarity=0.294 Sum_probs=147.3
Q ss_pred CCCCeEEEEEcCC--CCEEEE-----EeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCcc
Q 006220 350 THNGLNCASISQD--GSLVAG-----GFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSG 422 (656)
Q Consensus 350 ~~~~V~~l~fs~d--g~~La~-----g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 422 (656)
|..+|+.+.+||. -..+|+ ++.-+.|+||.+......... ..+.+ ...
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~-----------------------a~ksF--Fka 218 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPV-----------------------ANKSF--FKA 218 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchh-----------------------hhccc--ccc
Confidence 3567999999986 334554 345567999987632111100 00000 011
Q ss_pred CEEEEEEccCCCE-EEEEeC--C---------CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEE--CCCcEE
Q 006220 423 PVYSASFSPLGDF-ILSSSA--D---------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS--HDRTAR 488 (656)
Q Consensus 423 ~V~~l~~spd~~~-L~s~s~--D---------g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs--~Dg~i~ 488 (656)
.=..+.|++-|.- |+.++. | .++++.+++...+...+. ..+||.++.|+|++.-|+++- .-..+.
T Consensus 219 dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvt 297 (566)
T KOG2315|consen 219 DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVT 297 (566)
T ss_pred ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEE
Confidence 1235678776663 222222 2 468888888444444443 478999999999998876653 567899
Q ss_pred EEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEEC---CCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE
Q 006220 489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS---DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG 565 (656)
Q Consensus 489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~---dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~ 565 (656)
++|++. .++..+ ..++-+++-|+|.|++|+.++- .|.|.+||+.+.+++..+... ..+-..|+|||.+++|+
T Consensus 298 ifnlr~-~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~--~tt~~eW~PdGe~flTA 372 (566)
T KOG2315|consen 298 IFNLRG-KPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA--NTTVFEWSPDGEYFLTA 372 (566)
T ss_pred EEcCCC-CEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC--CceEEEEcCCCcEEEEE
Confidence 999864 455554 3567789999999999988764 489999999998888877653 34568999999999998
Q ss_pred EC------CCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCC
Q 006220 566 DE------DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCE 600 (656)
Q Consensus 566 ~~------dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~ 600 (656)
+. |+.++||+. +|..+....-.+ ..+.+.|-|.
T Consensus 373 TTaPRlrvdNg~Kiwhy-tG~~l~~~~f~s-EL~qv~W~P~ 411 (566)
T KOG2315|consen 373 TTAPRLRVDNGIKIWHY-TGSLLHEKMFKS-ELLQVEWRPF 411 (566)
T ss_pred eccccEEecCCeEEEEe-cCceeehhhhhH-hHhheeeeec
Confidence 73 688999998 677665433222 5677888763
No 270
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.06 E-value=5.8e-08 Score=100.70 Aligned_cols=285 Identities=16% Similarity=0.171 Sum_probs=177.3
Q ss_pred cceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCc---------------EEEEEcCCCCcccccccCCC
Q 006220 330 NRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSS---------------LKVWDMAKLGQQAVSSGLQG 394 (656)
Q Consensus 330 ~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~---------------I~Iwdl~~~~~~~~~~~~~~ 394 (656)
..|.+|....-..+ ..+. +..|.-+.|||.++||.+=+..+. +.|||...+...........
T Consensus 53 ~~V~~~~g~~~~~l--~~~~-~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q 129 (561)
T COG5354 53 AGVECWGGPSKAKL--VRFR-HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQ 129 (561)
T ss_pred cceEEccccchhhe--eeee-cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCC
Confidence 45566654333322 2222 346999999999999998765443 89999876543322211111
Q ss_pred C--CCCCCC---ccccCCCCCceeeEEee------c------CccCEEEEEEccCCC--EEEE-----EeCCCeEEEEec
Q 006220 395 E--NDTTPR---EDIIGPNGRKRSYTLYQ------G------HSGPVYSASFSPLGD--FILS-----SSADTTIRLWST 450 (656)
Q Consensus 395 ~--~~~~~~---~~~~~~~~~~~~~~~l~------~------h~~~V~~l~~spd~~--~L~s-----~s~Dg~I~lwd~ 450 (656)
. .+.... .+.+.....+..+.... . ....|...+|+|.++ .|+. ....+++++|.+
T Consensus 130 ~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sI 209 (561)
T COG5354 130 PYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSI 209 (561)
T ss_pred cccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEc
Confidence 0 000000 00000000000000000 0 125678888998643 3442 456789999999
Q ss_pred cCCceeEEeeCCCccEEEEEEecCCCEEEEEE-----------CCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCE
Q 006220 451 KLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-----------HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNY 519 (656)
Q Consensus 451 ~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs-----------~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~ 519 (656)
..+..+..-.-....-..+.|.+.|.++++-- ....++++++... .++...+..++|..++|.|.++.
T Consensus 210 p~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-~i~V~~~~~~pVhdf~W~p~S~~ 288 (561)
T COG5354 210 PKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER-SIPVEKDLKDPVHDFTWEPLSSR 288 (561)
T ss_pred cCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc-ccceeccccccceeeeecccCCc
Confidence 87766654333333345788999998876532 1256888888743 33333356789999999998887
Q ss_pred EEEE--ECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC---CcEEEEeCCCCeeeE-eeeCCCccEE
Q 006220 520 IATG--SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED---GTIMMWDLASGRCVT-PLMGHTSCVW 593 (656)
Q Consensus 520 l~tg--s~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d---g~I~iwD~~~~~~~~-~~~~h~~~V~ 593 (656)
+++. -.+..+.++|++.. .. +......=..+.|||.+++++.++-| |.|.+||......+. .+.+.. ..
T Consensus 289 F~vi~g~~pa~~s~~~lr~N-l~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s 363 (561)
T COG5354 289 FAVISGYMPASVSVFDLRGN-LR--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TS 363 (561)
T ss_pred eeEEecccccceeecccccc-eE--EecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ce
Confidence 7664 47889999999866 33 33344556678999999999997754 789999987654444 554433 34
Q ss_pred EEEEcCCCCEEEEEE------CCCcEEEEeCCCCCc
Q 006220 594 TLAYSCEGSLLASGS------ADCTVKLWDVTTSTK 623 (656)
Q Consensus 594 ~l~~s~~~~~l~sgs------~Dg~I~iWd~~~~~~ 623 (656)
-+.|+||++++.+.. .|+.|.|||+.....
T Consensus 364 ~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 364 YCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred EeeccCCceEEEecCCCcccccCcceEEEEecCchh
Confidence 567999999887764 478999999976544
No 271
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.06 E-value=1.2e-07 Score=111.22 Aligned_cols=239 Identities=14% Similarity=0.185 Sum_probs=159.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (656)
Q Consensus 351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 430 (656)
.+.|.++.|-++..-++.+..+|.|.+....... ..........-.+.|.+++||
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~-------------------------~~~~~E~VG~vd~GI~a~~WS 129 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDP-------------------------DEDEIEIVGSVDSGILAASWS 129 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCC-------------------------CCceeEEEEEEcCcEEEEEEC
Confidence 4579999999999999999999999998443200 011122222335789999999
Q ss_pred cCCCEEEEEeCCCeEEEEeccCCcee------------------------EEeeC------------------------C
Q 006220 431 PLGDFILSSSADTTIRLWSTKLNANL------------------------VCYKG------------------------H 462 (656)
Q Consensus 431 pd~~~L~s~s~Dg~I~lwd~~~~~~~------------------------~~~~~------------------------h 462 (656)
||+..|+..+.++++.+.+.+ ...+ ..|+| +
T Consensus 130 PD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~ 208 (928)
T PF04762_consen 130 PDEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSW 208 (928)
T ss_pred CCcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCcccc
Confidence 999999999999998886422 1100 01111 1
Q ss_pred CccEEEEEEecCCCEEEEEEC------CCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEEC---CCcEEEEe
Q 006220 463 NYPVWDVQFNPQGHYFASSSH------DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS---DKTVRLWD 533 (656)
Q Consensus 463 ~~~V~~l~~sp~~~~l~sgs~------Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~---dg~V~iwd 533 (656)
...-..|+|-.||.|||+.+- -+.+++|+-+ +.....-..-.+--.+++|.|+|++||+... ...|.+|.
T Consensus 209 dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE 287 (928)
T PF04762_consen 209 DDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE 287 (928)
T ss_pred CCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe
Confidence 223456889999999999874 2689999976 4333332222333457899999999998764 34677776
Q ss_pred CCCCeeEEEEe----cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeee--EeeeC-CCccEEEEEEcCC-CCEEE
Q 006220 534 VSSGECVRIFI----GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV--TPLMG-HTSCVWTLAYSCE-GSLLA 605 (656)
Q Consensus 534 ~~~~~~~~~~~----~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~--~~~~~-h~~~V~~l~~s~~-~~~l~ 605 (656)
++|-.-..|. .....|..+.|++|+..||....|. |.+|-..+..-. ..+.. ....+..+.|+|. ...|.
T Consensus 288 -rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~ 365 (928)
T PF04762_consen 288 -RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLH 365 (928)
T ss_pred -cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEE
Confidence 4554444443 3356799999999999999987665 999998776522 22222 2234555999995 44577
Q ss_pred EEECCCcEEEEeC
Q 006220 606 SGSADCTVKLWDV 618 (656)
Q Consensus 606 sgs~Dg~I~iWd~ 618 (656)
.++.+|.+.++++
T Consensus 366 v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 366 VLTSNGQYEIYDF 378 (928)
T ss_pred EEecCCcEEEEEE
Confidence 7777677655443
No 272
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.05 E-value=2.2e-09 Score=114.96 Aligned_cols=245 Identities=19% Similarity=0.285 Sum_probs=173.4
Q ss_pred CCeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220 352 NGLNCASISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (656)
Q Consensus 352 ~~V~~l~fs~d--g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 429 (656)
-.|-...|||. -.+-++.+....-.||++.... ....--.+.||+..|+.+.|
T Consensus 68 w~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss-------------------------~~aIef~lhghsraitd~n~ 122 (1081)
T KOG0309|consen 68 WQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS-------------------------SNAIEFVLHGHSRAITDINF 122 (1081)
T ss_pred chhcceecccCCCCceeEEecCcchhhhhhhhcCC-------------------------ccceEEEEecCccceecccc
Confidence 34778888875 3455555566666789886411 12234567899999999999
Q ss_pred ccCCC-EEEEEeCCCeEEEEeccCCce-eEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCC-ceeEEecCCCC
Q 006220 430 SPLGD-FILSSSADTTIRLWSTKLNAN-LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAGHLS 506 (656)
Q Consensus 430 spd~~-~L~s~s~Dg~I~lwd~~~~~~-~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~-~~~~~~~~~~~ 506 (656)
+|... .+++++.|..+..||+++... +..+..-......+.|+-....+.+.++.+.|++||++.+ .++..+.+|..
T Consensus 123 ~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs 202 (1081)
T KOG0309|consen 123 NPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVS 202 (1081)
T ss_pred CCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccce
Confidence 99775 788999999999999987543 3344444455678999886666777778889999999865 57778889999
Q ss_pred CeeEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeEE-EEecCCCCeEEEEEcCCCC--EEEEEECCCcEEEEeCC-----
Q 006220 507 DVDCVRWHI-NCNYIATGSSDKTVRLWDVSSGECVR-IFIGHRSMILSLAMSPDGR--YMASGDEDGTIMMWDLA----- 577 (656)
Q Consensus 507 ~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~~~~~~-~~~~h~~~i~~l~~sp~g~--~L~s~~~dg~I~iwD~~----- 577 (656)
.|+.++|.. ....+.+.+.||+|..||........ .......+|..-.+-|-|. ++.-.-.+..+.+++.+
T Consensus 203 ~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e 282 (1081)
T KOG0309|consen 203 SVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLE 282 (1081)
T ss_pred eeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhh
Confidence 999999875 34567889999999999987543221 1223445677777777443 33322222344444432
Q ss_pred -----CCeeeEeeeCCCccEEEEEEcCCC----------CEEEEEECCCcEEEEeCCCC
Q 006220 578 -----SGRCVTPLMGHTSCVWTLAYSCEG----------SLLASGSADCTVKLWDVTTS 621 (656)
Q Consensus 578 -----~~~~~~~~~~h~~~V~~l~~s~~~----------~~l~sgs~Dg~I~iWd~~~~ 621 (656)
..++++++.||...|..+.|-..+ -.|+|-+.|.++++|-+.+.
T Consensus 283 ~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 283 WNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred hccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 246789999999988877774422 26999999999999998753
No 273
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.04 E-value=2.3e-07 Score=90.49 Aligned_cols=232 Identities=13% Similarity=0.145 Sum_probs=138.8
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEE
Q 006220 357 ASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFI 436 (656)
Q Consensus 357 l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L 436 (656)
++.+.||++||+- +|..|.|=.....-... ...+.........=..++||||+.+|
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si-----------------------~~kcqVpkD~~PQWRkl~WSpD~tlL 58 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSI-----------------------IGKCQVPKDPNPQWRKLAWSPDCTLL 58 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchhe-----------------------eEEEecCCCCCchheEEEECCCCcEE
Confidence 5678899999887 88888887755311000 01111122222234568999999999
Q ss_pred EEEeCCCeEEEEeccCCceeEEeeC-------CCccEEEEEEecC------CCEEEEEECCCcEEEEECCC-----Ccee
Q 006220 437 LSSSADTTIRLWSTKLNANLVCYKG-------HNYPVWDVQFNPQ------GHYFASSSHDRTARIWSMDR-----IQPL 498 (656)
Q Consensus 437 ~s~s~Dg~I~lwd~~~~~~~~~~~~-------h~~~V~~l~~sp~------~~~l~sgs~Dg~i~lwd~~~-----~~~~ 498 (656)
+.+...|+|+++|+.. ..+..+.. -..+|.++.|.+. ...|++-..+|.++-|-+.. .+..
T Consensus 59 a~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~ 137 (282)
T PF15492_consen 59 AYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQEN 137 (282)
T ss_pred EEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceee
Confidence 9999999999999984 44433332 2356777777653 22466777788887776522 2222
Q ss_pred EEec---CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEE---cCCCCEEEEEECCC---
Q 006220 499 RIMA---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAM---SPDGRYMASGDEDG--- 569 (656)
Q Consensus 499 ~~~~---~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~---sp~g~~L~s~~~dg--- 569 (656)
..+. .+...|.++.|+|..+.|++|+.... ..+.. ++....+++-.. +|..+.+ +...|+
T Consensus 138 hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~s----~a~~~GLtaWRiL~~~Pyyk~v-~~~~~~~~~ 206 (282)
T PF15492_consen 138 HSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGMS----KASSCGLTAWRILSDSPYYKQV-TSSEDDITA 206 (282)
T ss_pred EEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCccc----cccccCceEEEEcCCCCcEEEc-cccCccccc
Confidence 3333 34678999999999999888775422 00000 011111222111 1111111 111111
Q ss_pred ---cEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220 570 ---TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624 (656)
Q Consensus 570 ---~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~ 624 (656)
+-.+|.+-+.+...........|..+..||||+.||+...+|.|.+|++.+-...
T Consensus 207 ~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 207 SSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred cccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 1234444433333222234578999999999999999999999999999886544
No 274
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.02 E-value=1.5e-07 Score=110.50 Aligned_cols=270 Identities=17% Similarity=0.166 Sum_probs=163.1
Q ss_pred eeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC--cccccccCCCCCC-----CCCCccccC-CCCCc--------
Q 006220 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLG--QQAVSSGLQGEND-----TTPREDIIG-PNGRK-------- 411 (656)
Q Consensus 348 ~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~--~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~-------- 411 (656)
..-.++|.|++||||+.+||..+.+|+|.+-+.+-.. .........+... ....+.-+. ..++.
T Consensus 117 G~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p 196 (928)
T PF04762_consen 117 GSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDP 196 (928)
T ss_pred EEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCC
Confidence 3456789999999999999999999998887543211 0000000000000 000000000 00000
Q ss_pred ----eeeEEeecCccCEEEEEEccCCCEEEEEeC---C---CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEE
Q 006220 412 ----RSYTLYQGHSGPVYSASFSPLGDFILSSSA---D---TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASS 481 (656)
Q Consensus 412 ----~~~~~l~~h~~~V~~l~~spd~~~L~s~s~---D---g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sg 481 (656)
.....+. +...-..++|-.||.++++.+- . ..||||+-+ |....+...-.+--.+++|-|.|+.+|+.
T Consensus 197 ~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~ 274 (928)
T PF04762_consen 197 TVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASS 274 (928)
T ss_pred CCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEE
Confidence 0001122 3445668999999999997764 2 579999976 54433333223333468999999999988
Q ss_pred EC---CCcEEEEECCCCceeEEe----cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee--EEEEe-cCCCCeE
Q 006220 482 SH---DRTARIWSMDRIQPLRIM----AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC--VRIFI-GHRSMIL 551 (656)
Q Consensus 482 s~---Dg~i~lwd~~~~~~~~~~----~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~--~~~~~-~h~~~i~ 551 (656)
.. ...|.+|.-+ |-.-..| ......|..+.|++++..||....|. |.+|-..+..- ...+. .....+.
T Consensus 275 q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~ 352 (928)
T PF04762_consen 275 QRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVN 352 (928)
T ss_pred EEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCC
Confidence 64 3456666533 2222222 23456799999999999999987665 99998877542 12222 1223455
Q ss_pred EEEEcCC-CCEEEEEECCCcEEEEeCC----CCe--------eeE----------eee-------------CCCccEEEE
Q 006220 552 SLAMSPD-GRYMASGDEDGTIMMWDLA----SGR--------CVT----------PLM-------------GHTSCVWTL 595 (656)
Q Consensus 552 ~l~~sp~-g~~L~s~~~dg~I~iwD~~----~~~--------~~~----------~~~-------------~h~~~V~~l 595 (656)
.+.|+|. ...|...+.+|.+..+++. .+. .+. .+. ....+|.++
T Consensus 353 ~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~v 432 (928)
T PF04762_consen 353 FVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDV 432 (928)
T ss_pred ceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEE
Confidence 5899995 3456666666666655431 110 011 110 124679999
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 596 AYSCEGSLLASGSADCTVKLWDVTTS 621 (656)
Q Consensus 596 ~~s~~~~~l~sgs~Dg~I~iWd~~~~ 621 (656)
+|++++..+++-..||.|.+|.....
T Consensus 433 af~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 433 AFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred EEeCCCCeEEEEECCCCEEEEEecCC
Confidence 99999988999999999999996554
No 275
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=3.5e-08 Score=106.58 Aligned_cols=239 Identities=17% Similarity=0.126 Sum_probs=178.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCC
Q 006220 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG 433 (656)
Q Consensus 354 V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~ 433 (656)
-.++.|+|.| ++|.|+ .+.|.|-|... .+.+..+.-|...|+.+.|.|-.
T Consensus 18 ~~A~Dw~~~G-LiAygs-hslV~VVDs~s----------------------------~q~iqsie~h~s~V~~VrWap~~ 67 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGS-HSLVSVVDSRS----------------------------LQLIQSIELHQSAVTSVRWAPAP 67 (1062)
T ss_pred ccccccCccc-eEEEec-CceEEEEehhh----------------------------hhhhhccccCccceeEEEeccCC
Confidence 6788999876 677774 45677777553 23445566788999999998731
Q ss_pred ------------CEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEec---CC-CEEEEEECCCcEEEEECCCCce
Q 006220 434 ------------DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP---QG-HYFASSSHDRTARIWSMDRIQP 497 (656)
Q Consensus 434 ------------~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp---~~-~~l~sgs~Dg~i~lwd~~~~~~ 497 (656)
-.|+++...|.|.+||...+..+..+..|..++.+++|-+ +. ..++.-....++.+|+++++..
T Consensus 68 ~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 68 SPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred CchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce
Confidence 2467888889999999999998888999999999999987 33 4566667778999999999999
Q ss_pred eEEecCCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCC-------CCeeEEEEecCCC---------------------
Q 006220 498 LRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVS-------SGECVRIFIGHRS--------------------- 548 (656)
Q Consensus 498 ~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~-------~~~~~~~~~~h~~--------------------- 548 (656)
............|+.+.| +.+.+...+..|.|.+.+.- .|+...+-..|..
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa 227 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASA 227 (1062)
T ss_pred eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcch
Confidence 888776667788899998 66777777778888877653 1333333333322
Q ss_pred ----CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCC--CEEEEEECCCcEEEEeCCCCC
Q 006220 549 ----MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEG--SLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 549 ----~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~--~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
..-.++|+|.-+-++-...-..+.++|+.-..++....-..+.+.-+.|-|++ ..|.++..||.+.+|--+...
T Consensus 228 ~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~ 307 (1062)
T KOG1912|consen 228 YFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEP 307 (1062)
T ss_pred hHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccC
Confidence 01235678876655555566789999999888888877666666777777754 579999999999999876643
No 276
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.99 E-value=9.6e-08 Score=91.59 Aligned_cols=231 Identities=10% Similarity=-0.010 Sum_probs=153.0
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccC-CCEEEEEe
Q 006220 362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL-GDFILSSS 440 (656)
Q Consensus 362 dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd-~~~L~s~s 440 (656)
...+||.|+..|...+|...+... .......|...|.-+.=..+ .--+..++
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~---------------------------h~~~cd~snn~v~~~~r~cd~~~~~~i~s 135 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDG---------------------------HLYQCDVSNNDVTLVKRYCDLKFPLNIAS 135 (344)
T ss_pred cccEEEeccccceeeeecccCccc---------------------------ceeeecccccchhhhhhhcccccceeecc
Confidence 567899999999999999875211 11111112222211111111 12366778
Q ss_pred CCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc--eeE-EecCCCCCeeEEEEcCCC
Q 006220 441 ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ--PLR-IMAGHLSDVDCVRWHINC 517 (656)
Q Consensus 441 ~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~--~~~-~~~~~~~~V~~v~~~p~~ 517 (656)
.|.++++.+++.+..........-.+.++.+++++.++++.+....|..|.++... .++ ........-.+..|+.+.
T Consensus 136 ndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~ 215 (344)
T KOG4532|consen 136 NDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND 215 (344)
T ss_pred CCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc
Confidence 89999999887554433322222338899999999999999999999999987532 233 223344456788999999
Q ss_pred CEEEEEECCCcEEEEeCCCCeeEE-----EEecCCCCeEEEEEcCCCC--EEEEEECCCcEEEEeCCCCeeeEeee----
Q 006220 518 NYIATGSSDKTVRLWDVSSGECVR-----IFIGHRSMILSLAMSPDGR--YMASGDEDGTIMMWDLASGRCVTPLM---- 586 (656)
Q Consensus 518 ~~l~tgs~dg~V~iwd~~~~~~~~-----~~~~h~~~i~~l~~sp~g~--~L~s~~~dg~I~iwD~~~~~~~~~~~---- 586 (656)
..+|+++.||++.|||++.-.... .-..|.+.+..+.|++-|. +|+..-.-+.+.+.|+++++....+.
T Consensus 216 ~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d 295 (344)
T KOG4532|consen 216 LQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDD 295 (344)
T ss_pred ceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcc
Confidence 999999999999999999654322 2235889999999998664 45555456789999999987555442
Q ss_pred ---CCC-ccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 587 ---GHT-SCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 587 ---~h~-~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
.|. ..|..-.|+.++..+.+.+.+ .+.=|++.+
T Consensus 296 ~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 296 VERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred ccccccccccccccccCCCcccccccch-hhheeeccc
Confidence 233 337777787776666555544 344565544
No 277
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.98 E-value=9.4e-09 Score=103.82 Aligned_cols=164 Identities=21% Similarity=0.250 Sum_probs=116.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCC
Q 006220 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG 433 (656)
Q Consensus 354 V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~ 433 (656)
+..+..++++++||++..+....++++...... .+..... .-...-+++.|..+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~------------------------~kl~~~~-~v~~~~~ai~~~~~~ 119 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKG------------------------AKLLDVS-CVPKRPTAISFIRED 119 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCc------------------------ceeeeEe-ecccCcceeeeeecc
Confidence 445567889999999988888888887652210 0111111 111222334444333
Q ss_pred CEEE---EEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec-CCCCCee
Q 006220 434 DFIL---SSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA-GHLSDVD 509 (656)
Q Consensus 434 ~~L~---s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~-~~~~~V~ 509 (656)
.... .++....+.+|+...+ +...+-||-+.+.+++|+||+.+++++..|..|++-.......+..+- ||..-|.
T Consensus 120 ~sv~v~dkagD~~~~di~s~~~~-~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS 198 (390)
T KOG3914|consen 120 TSVLVADKAGDVYSFDILSADSG-RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVS 198 (390)
T ss_pred ceEEEEeecCCceeeeeeccccc-CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhhee
Confidence 3333 4445566777776653 344456899999999999999999999999999998887766665554 7999999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe
Q 006220 510 CVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI 544 (656)
Q Consensus 510 ~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~ 544 (656)
.++.-++. .|++||.|++|++||+++|+++.++.
T Consensus 199 ~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 199 TISLTDNY-LLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eeeeccCc-eeeecCCCCcEEEEecccCCcccccc
Confidence 99987654 58999999999999999999987654
No 278
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=6.2e-08 Score=101.24 Aligned_cols=235 Identities=16% Similarity=0.228 Sum_probs=163.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCC
Q 006220 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG 433 (656)
Q Consensus 354 V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~ 433 (656)
=+-+.|||.|+||++--.- -|.+|-=..- ..+.. ..|. .|.-+.|||..
T Consensus 213 etyv~wSP~GTYL~t~Hk~-GI~lWGG~~f----------------------------~r~~R-F~Hp-~Vq~idfSP~E 261 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQ-GIALWGGESF----------------------------DRIQR-FYHP-GVQFIDFSPNE 261 (698)
T ss_pred eeeEEecCCceEEEEEecc-ceeeecCccH----------------------------HHHHh-ccCC-CceeeecCCcc
Confidence 4678999999999987444 4778863210 01111 1244 47889999999
Q ss_pred CEEEEEeC-----------CCeEEEEeccCCceeEEeeC--CCccEEE-EEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 006220 434 DFILSSSA-----------DTTIRLWSTKLNANLVCYKG--HNYPVWD-VQFNPQGHYFASSSHDRTARIWSMDRIQPLR 499 (656)
Q Consensus 434 ~~L~s~s~-----------Dg~I~lwd~~~~~~~~~~~~--h~~~V~~-l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~ 499 (656)
++|++-|. ...++|||+.+|.....+.. ....+|. +.||-|+.|+|.-.. .+|.||+..+..++.
T Consensus 262 kYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld 340 (698)
T KOG2314|consen 262 KYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLD 340 (698)
T ss_pred ceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeec
Confidence 99998663 25799999999998887766 3445554 579999999988776 569999987655444
Q ss_pred EecCCCCCeeEEEEcCCCCEEEEEE-----CCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEEC-------
Q 006220 500 IMAGHLSDVDCVRWHINCNYIATGS-----SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE------- 567 (656)
Q Consensus 500 ~~~~~~~~V~~v~~~p~~~~l~tgs-----~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~------- 567 (656)
.-.-..+.|....|+|.++.||-=+ .-..+.+..+.+++.+++-.-|.-.=..+.|-.+|.+|+.--.
T Consensus 341 ~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~ 420 (698)
T KOG2314|consen 341 KKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKV 420 (698)
T ss_pred ccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccc
Confidence 3334556788999999999888533 2246778888888888776655544456778888998886321
Q ss_pred ---CCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECC---CcEEEEeCCC
Q 006220 568 ---DGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD---CTVKLWDVTT 620 (656)
Q Consensus 568 ---dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~D---g~I~iWd~~~ 620 (656)
-..+.|+.++........-.-...|..++|-|.|+.+++-+.. .++.+|.+.+
T Consensus 421 ~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 421 KGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET 479 (698)
T ss_pred cceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence 1235555555443322222345678999999999987776543 6799999874
No 279
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=3e-07 Score=99.45 Aligned_cols=190 Identities=11% Similarity=-0.028 Sum_probs=121.1
Q ss_pred CeEEEEEcCCCCE-EEEEeCC---CcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEE
Q 006220 353 GLNCASISQDGSL-VAGGFSD---SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (656)
Q Consensus 353 ~V~~l~fs~dg~~-La~g~~d---g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 428 (656)
.+....|||||+. ++..+.+ ..|.++|+.+.. ...+....+.+....
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~-----------------------------~~~lt~~~g~~~~~~ 239 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK-----------------------------KEKIASSQGMLVVSD 239 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc-----------------------------EEEEecCCCcEEeeE
Confidence 5778999999985 6654443 457777765411 112223445566778
Q ss_pred EccCCCEEEE-EeCC--CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC-CC--cEEEEECCCCceeEEec
Q 006220 429 FSPLGDFILS-SSAD--TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DR--TARIWSMDRIQPLRIMA 502 (656)
Q Consensus 429 ~spd~~~L~s-~s~D--g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~-Dg--~i~lwd~~~~~~~~~~~ 502 (656)
|+|||+.++. .+.+ ..|.++++.++.. ..+..+........|+|+|+.|+..+. .+ .|+++|+.+++..+...
T Consensus 240 ~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~ 318 (419)
T PRK04043 240 VSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF 318 (419)
T ss_pred ECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc
Confidence 9999987653 3333 4688888877654 334333333345689999998877763 23 68888888776655443
Q ss_pred CCCCCeeEEEEcCCCCEEEEEECC---------CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC-C--c
Q 006220 503 GHLSDVDCVRWHINCNYIATGSSD---------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED-G--T 570 (656)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tgs~d---------g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d-g--~ 570 (656)
... ....|+|+|++|+..+.. ..|.+.|+.++.... +... .......|+|||+.|+..+.+ + .
T Consensus 319 ~g~---~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~ 393 (419)
T PRK04043 319 HGK---NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKYLGNQSA 393 (419)
T ss_pred CCC---cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEccCCcEE
Confidence 211 124899999999876643 368888988876543 3332 233458899999987765533 2 3
Q ss_pred EEEEeCC
Q 006220 571 IMMWDLA 577 (656)
Q Consensus 571 I~iwD~~ 577 (656)
+.+.++.
T Consensus 394 L~~~~l~ 400 (419)
T PRK04043 394 LGIIRLN 400 (419)
T ss_pred EEEEecC
Confidence 5666663
No 280
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=4.6e-07 Score=97.96 Aligned_cols=193 Identities=7% Similarity=-0.011 Sum_probs=127.9
Q ss_pred cCEEEEEEccCCCE-EEEEeC---CCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEE-CC--CcEEEEECCC
Q 006220 422 GPVYSASFSPLGDF-ILSSSA---DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HD--RTARIWSMDR 494 (656)
Q Consensus 422 ~~V~~l~~spd~~~-L~s~s~---Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs-~D--g~i~lwd~~~ 494 (656)
+.+....|+|||+. ++..+. +..|.++|+.+++...... ..+......|+|||..++... .+ ..|.++|+.+
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 37788999999984 554443 3569999998876654433 444566788999998776543 33 4678888877
Q ss_pred CceeEEecCCCCCeeEEEEcCCCCEEEEEECC-C--cEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC---
Q 006220 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSD-K--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED--- 568 (656)
Q Consensus 495 ~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d-g--~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d--- 568 (656)
+...+ +..+........|+|+|+.|+..+.. + .|+++|+.+++..+.... ... ...|||+|++|+..+..
T Consensus 267 g~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~ 342 (419)
T PRK04043 267 KTLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNN 342 (419)
T ss_pred CcEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCc
Confidence 76444 33333333456899999988776632 3 688889988877554332 111 24899999988876543
Q ss_pred ------CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCC---cEEEEeCCCC
Q 006220 569 ------GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC---TVKLWDVTTS 621 (656)
Q Consensus 569 ------g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg---~I~iWd~~~~ 621 (656)
..|.+.|+.++.. ..+... +......|+|||+.|+..+.++ .+.+.++...
T Consensus 343 ~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 343 EFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred ccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 3688889877754 334332 2334688999999877766432 3666666553
No 281
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.94 E-value=7.2e-09 Score=104.66 Aligned_cols=160 Identities=21% Similarity=0.352 Sum_probs=114.5
Q ss_pred cEEEEEEecCCCEEEEEECCCcEEEEECCCCce----eEEecCCCCCeeEEEEcCCCCEEEEEECC---CcEEEEeCCCC
Q 006220 465 PVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP----LRIMAGHLSDVDCVRWHINCNYIATGSSD---KTVRLWDVSSG 537 (656)
Q Consensus 465 ~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~----~~~~~~~~~~V~~v~~~p~~~~l~tgs~d---g~V~iwd~~~~ 537 (656)
..+.+..++.+.++|++..+....+++++.... +.... -...-+++.|......+..+..- ..+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 455567788888999988888877777765433 11111 11223344444444445444433 44555555444
Q ss_pred eeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeee-CCCccEEEEEEcCCCCEEEEEECCCcEEEE
Q 006220 538 ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM-GHTSCVWTLAYSCEGSLLASGSADCTVKLW 616 (656)
Q Consensus 538 ~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iW 616 (656)
.+ +.+.||-+.++.++|+||+++|+++..|..|++-.......+..+- ||+..|..++.-++ ..|+|||.|++|++|
T Consensus 143 ~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 143 RC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLW 220 (390)
T ss_pred Cc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEE
Confidence 33 4456899999999999999999999999999998887666666554 79999999998765 459999999999999
Q ss_pred eCCCCCceeec
Q 006220 617 DVTTSTKVLKT 627 (656)
Q Consensus 617 d~~~~~~~~~~ 627 (656)
|+.+++.+...
T Consensus 221 d~~sgk~L~t~ 231 (390)
T KOG3914|consen 221 DITSGKLLDTC 231 (390)
T ss_pred ecccCCccccc
Confidence 99999887543
No 282
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.92 E-value=3e-06 Score=85.22 Aligned_cols=216 Identities=16% Similarity=0.146 Sum_probs=144.7
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc-cCC
Q 006220 356 CASISQ-DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS-PLG 433 (656)
Q Consensus 356 ~l~fs~-dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s-pd~ 433 (656)
++.|.+ ++.++++....+.|..|+.... ...... ..+ ..++.+. +++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~-----------------------------~~~~~~-~~~-~~G~~~~~~~g 52 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG-----------------------------EVEVID-LPG-PNGMAFDRPDG 52 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTT-----------------------------EEEEEE-SSS-EEEEEEECTTS
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCC-----------------------------eEEEEe-cCC-CceEEEEccCC
Confidence 578887 7888888878899999997641 111111 112 6677777 554
Q ss_pred CEEEEEeCCCeEEEEeccCCceeEEeeC-----CCccEEEEEEecCCCEEEEEECC--------CcEEEEECCCCceeEE
Q 006220 434 DFILSSSADTTIRLWSTKLNANLVCYKG-----HNYPVWDVQFNPQGHYFASSSHD--------RTARIWSMDRIQPLRI 500 (656)
Q Consensus 434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~-----h~~~V~~l~~sp~~~~l~sgs~D--------g~i~lwd~~~~~~~~~ 500 (656)
.|+.+...+ +.++|..+++....... ......++++.|+|++.++.... |.+..++.+ ++....
T Consensus 53 -~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 53 -RLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp -EEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred -EEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 455555544 66669888755433332 34568899999999977776643 457777776 443333
Q ss_pred ecCCCCCeeEEEEcCCCCEEE-EEECCCcEEEEeCCCCee----EEEE---ecCCCCeEEEEEcCCCCEEEEEECCCcEE
Q 006220 501 MAGHLSDVDCVRWHINCNYIA-TGSSDKTVRLWDVSSGEC----VRIF---IGHRSMILSLAMSPDGRYMASGDEDGTIM 572 (656)
Q Consensus 501 ~~~~~~~V~~v~~~p~~~~l~-tgs~dg~V~iwd~~~~~~----~~~~---~~h~~~i~~l~~sp~g~~L~s~~~dg~I~ 572 (656)
.......+.++|+|+++.|+ +-+..+.|..|++..... .+.+ ....+....+++..+|++.++....+.|.
T Consensus 130 -~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~ 208 (246)
T PF08450_consen 130 -ADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIV 208 (246)
T ss_dssp -EEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEE
T ss_pred -ecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEE
Confidence 33456678999999999776 455678899999863221 2223 22223477899999999888888899999
Q ss_pred EEeCCCCeeeEeeeCCCccEEEEEE-cCCCCEEEEE
Q 006220 573 MWDLASGRCVTPLMGHTSCVWTLAY-SCEGSLLASG 607 (656)
Q Consensus 573 iwD~~~~~~~~~~~~h~~~V~~l~~-s~~~~~l~sg 607 (656)
++|.. |+.+..+......+++++| .++.+.|...
T Consensus 209 ~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 209 VFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred EECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 99976 9988888766568999999 4665555443
No 283
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.89 E-value=5.7e-07 Score=92.52 Aligned_cols=172 Identities=17% Similarity=0.198 Sum_probs=135.6
Q ss_pred CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCC-cEEEEECCCCceeEEecCCCCCeeE
Q 006220 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR-TARIWSMDRIQPLRIMAGHLSDVDC 510 (656)
Q Consensus 432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg-~i~lwd~~~~~~~~~~~~~~~~V~~ 510 (656)
+|.+++..|. |...+.+...+-.+. -+|...|.-..+..++.-++.|..|| .+-++|.++++..+. .+..+.|.+
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-e~~lg~I~a 406 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-EKDLGNIEA 406 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe-eCCccceEE
Confidence 5778887776 667777765444333 35677788888888888999999999 899999998765544 456788999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCC----cEEEEeCCCCeeeEeee
Q 006220 511 VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDG----TIMMWDLASGRCVTPLM 586 (656)
Q Consensus 511 v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg----~I~iwD~~~~~~~~~~~ 586 (656)
+..+|+|++++++.....+.+.|+.+|+....-+...+-|+...|+|+++++|-+--+| .|+++|+..++.... .
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v-T 485 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV-T 485 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe-c
Confidence 99999999999999999999999999988776667778899999999999999887665 699999987765543 2
Q ss_pred CCCccEEEEEEcCCCCEEEEEE
Q 006220 587 GHTSCVWTLAYSCEGSLLASGS 608 (656)
Q Consensus 587 ~h~~~V~~l~~s~~~~~l~sgs 608 (656)
...+.=.+-+|.|++++|.--+
T Consensus 486 T~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 486 TPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CCcccccCcccCCCCcEEEEEe
Confidence 2333334567899999876554
No 284
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.88 E-value=3.6e-07 Score=94.97 Aligned_cols=236 Identities=14% Similarity=0.198 Sum_probs=165.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (656)
Q Consensus 351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 430 (656)
.-++..++|||.|.+|++.... .|.+|.-.... .+..+ ....|+.+.||
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~----------------------------~l~~~--~~~~V~~~~fS 80 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKA----------------------------KLVRF--RHPDVKYLDFS 80 (561)
T ss_pred CcchhheeecCcchheehhhcc-ceEEccccchh----------------------------heeee--ecCCceecccC
Confidence 4468899999999999987544 48888754311 11111 22468999999
Q ss_pred cCCCEEEEEeCCC---------------eEEEEeccCCceeEEeeCCCcc--EE-EEEEecCCCEEEEEECCCcEEEEEC
Q 006220 431 PLGDFILSSSADT---------------TIRLWSTKLNANLVCYKGHNYP--VW-DVQFNPQGHYFASSSHDRTARIWSM 492 (656)
Q Consensus 431 pd~~~L~s~s~Dg---------------~I~lwd~~~~~~~~~~~~h~~~--V~-~l~~sp~~~~l~sgs~Dg~i~lwd~ 492 (656)
|.+++|.+-+..+ .+.+||+.++..+..+.+...+ .| -+.|+-+..|+|-. ....++++++
T Consensus 81 P~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~ 159 (561)
T COG5354 81 PNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI 159 (561)
T ss_pred cccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec
Confidence 9999999876543 4999999999999988887766 77 78999988887655 3356899995
Q ss_pred -CCCc--eeEEecCCCCCeeEEEEcCCC--CEEEE-----EECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEE
Q 006220 493 -DRIQ--PLRIMAGHLSDVDCVRWHINC--NYIAT-----GSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM 562 (656)
Q Consensus 493 -~~~~--~~~~~~~~~~~V~~v~~~p~~--~~l~t-----gs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L 562 (656)
.+.. +...+ ....|....|+|.+ ..|+. ++.++.+++|.+..+..+.+..-....-..+.|.+.|.+|
T Consensus 160 t~n~~~~p~~~l--r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~l 237 (561)
T COG5354 160 TDNIEEHPFKNL--RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYL 237 (561)
T ss_pred CCccccCchhhc--cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceE
Confidence 2222 11122 23567888899854 33443 5678899999998777665543333334568899999887
Q ss_pred EEEE-----------CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEE--CCCcEEEEeCCCC
Q 006220 563 ASGD-----------EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGS--ADCTVKLWDVTTS 621 (656)
Q Consensus 563 ~s~~-----------~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs--~Dg~I~iWd~~~~ 621 (656)
++-- ....+.|+++....+-.. ..-.++|..++|.|.++.+++.+ .+-.+.++|++..
T Consensus 238 l~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 238 LVLVMTHTKSNKSYFGESNLYLLRITERSIPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred EEEEEEeeecccceeccceEEEEeeccccccee-ccccccceeeeecccCCceeEEecccccceeecccccc
Confidence 6532 124688888864333322 25578999999999888766655 6778899998876
No 285
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.88 E-value=2.9e-06 Score=85.37 Aligned_cols=207 Identities=11% Similarity=0.148 Sum_probs=142.7
Q ss_pred eecCccCEEEEEEccCCCEEEEEeCC---CeEEEEeccC--Cce--eEEeeCCCccEEEEEEecCCCEEEEEE-CCCcEE
Q 006220 417 YQGHSGPVYSASFSPLGDFILSSSAD---TTIRLWSTKL--NAN--LVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTAR 488 (656)
Q Consensus 417 l~~h~~~V~~l~~spd~~~L~s~s~D---g~I~lwd~~~--~~~--~~~~~~h~~~V~~l~~sp~~~~l~sgs-~Dg~i~ 488 (656)
+..+.+.++-++|+|+++.|.++-.+ |.|..|.++. |.. +........+-+.++++++|++++++. .-|.|.
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence 34566788899999999999887654 7788877764 332 111222233447899999999999987 568899
Q ss_pred EEECCC-CceeE--EecCCCCC----------eeEEEEcCCCCEEEEEEC-CCcEEEEeCCCCeeEEEEe---cCCCCeE
Q 006220 489 IWSMDR-IQPLR--IMAGHLSD----------VDCVRWHINCNYIATGSS-DKTVRLWDVSSGECVRIFI---GHRSMIL 551 (656)
Q Consensus 489 lwd~~~-~~~~~--~~~~~~~~----------V~~v~~~p~~~~l~tgs~-dg~V~iwd~~~~~~~~~~~---~h~~~i~ 551 (656)
++-++. +.... ....|.+. +.+..+.|++++|++.+- --.|.+|++..|.....-. .....-.
T Consensus 115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPR 194 (346)
T COG2706 115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPR 194 (346)
T ss_pred EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcc
Confidence 998854 32221 12234444 888999999999988753 2479999999776543211 2344568
Q ss_pred EEEEcCCCCEEEEEE-CCCcEEEEeCCCC-eeeEeeeC---------CCccEEEEEEcCCCCEEEEEE-CCCcEEEEeCC
Q 006220 552 SLAMSPDGRYMASGD-EDGTIMMWDLASG-RCVTPLMG---------HTSCVWTLAYSCEGSLLASGS-ADCTVKLWDVT 619 (656)
Q Consensus 552 ~l~~sp~g~~L~s~~-~dg~I~iwD~~~~-~~~~~~~~---------h~~~V~~l~~s~~~~~l~sgs-~Dg~I~iWd~~ 619 (656)
.|.|+|+|++..+.+ -+++|.+|..... ..+..++. -......+..++||++|.++. ....|.++.+.
T Consensus 195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~ 274 (346)
T COG2706 195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD 274 (346)
T ss_pred eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 899999999887755 6889999998763 23333321 123456788999999988775 33478888877
Q ss_pred CCCc
Q 006220 620 TSTK 623 (656)
Q Consensus 620 ~~~~ 623 (656)
....
T Consensus 275 ~~~g 278 (346)
T COG2706 275 PDGG 278 (346)
T ss_pred CCCC
Confidence 6543
No 286
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.87 E-value=5.6e-07 Score=107.66 Aligned_cols=215 Identities=13% Similarity=0.167 Sum_probs=136.1
Q ss_pred eEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc-
Q 006220 354 LNCASISQDGSLVAGG-FSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP- 431 (656)
Q Consensus 354 V~~l~fs~dg~~La~g-~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp- 431 (656)
-..++++++++.|.++ +.++.|+++|+.+......... +..... . ..+...... .-..-++++|+|
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~--G~~g~~-----~-~gg~~~~~~----~ln~P~gVa~dp~ 693 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGN--GTKGSD-----Y-QGGKKGTSQ----VLNSPWDVCFEPV 693 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEecc--CcccCC-----C-CCChhhhHh----hcCCCeEEEEecC
Confidence 4788899888765554 4457799998765221111000 000000 0 000000000 012235789999
Q ss_pred CCCEEEEEeCCCeEEEEeccCCceeEEeeCC---------------CccEEEEEEecCCCEE-EEEECCCcEEEEECCCC
Q 006220 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGH---------------NYPVWDVQFNPQGHYF-ASSSHDRTARIWSMDRI 495 (656)
Q Consensus 432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h---------------~~~V~~l~~sp~~~~l-~sgs~Dg~i~lwd~~~~ 495 (656)
++..+++.+.++.|++||..++... .+.+. -...++|+++|++..+ ++-+.++.|++||++++
T Consensus 694 ~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg 772 (1057)
T PLN02919 694 NEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTG 772 (1057)
T ss_pred CCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence 5566677788899999998766432 22111 1234679999998855 45556799999999875
Q ss_pred ceeEEecC---------------------CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe----------
Q 006220 496 QPLRIMAG---------------------HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI---------- 544 (656)
Q Consensus 496 ~~~~~~~~---------------------~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~---------- 544 (656)
.......+ .......++++++|+.+++-+.++.|++||..++.......
T Consensus 773 ~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~ 852 (1057)
T PLN02919 773 GSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGK 852 (1057)
T ss_pred cEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCc
Confidence 43211100 01134688999999988888899999999998876653321
Q ss_pred ---cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCee
Q 006220 545 ---GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRC 581 (656)
Q Consensus 545 ---~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~ 581 (656)
+.-.....|+++++|+++++-+.++.|++||+.+++.
T Consensus 853 ~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 853 ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 1112467899999999988888999999999988764
No 287
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=5.5e-09 Score=103.22 Aligned_cols=157 Identities=17% Similarity=0.253 Sum_probs=121.9
Q ss_pred EEEec--CCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC-----eeEE
Q 006220 469 VQFNP--QGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-----ECVR 541 (656)
Q Consensus 469 l~~sp--~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~-----~~~~ 541 (656)
++|+- .|.. ++.+.+..+-+-|+.++.... |. ..++|.++.|+..++.++.|+.+|.|..+|++.+ .+..
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~qs-f~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQS-FQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeecccccc-cc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 35543 3444 455566778888888764433 33 6788999999999999999999999999999864 3444
Q ss_pred EEecCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCCCCee---eEeeeCCCccEE--EEEEcCCCCEEEEEECCCcEEE
Q 006220 542 IFIGHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRC---VTPLMGHTSCVW--TLAYSCEGSLLASGSADCTVKL 615 (656)
Q Consensus 542 ~~~~h~~~i~~l~~sp-~g~~L~s~~~dg~I~iwD~~~~~~---~~~~~~h~~~V~--~l~~s~~~~~l~sgs~Dg~I~i 615 (656)
.+ -|.+.|+++..-. ++++|++.+.+|+|.+||++.-++ +.++.||...-. -+...+....++++|.|...||
T Consensus 294 rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRi 372 (425)
T KOG2695|consen 294 RL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRI 372 (425)
T ss_pred EE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEE
Confidence 44 3889999988766 788999999999999999998777 888899864332 2334667778999999999999
Q ss_pred EeCCCCCceeeccc
Q 006220 616 WDVTTSTKVLKTEE 629 (656)
Q Consensus 616 Wd~~~~~~~~~~~~ 629 (656)
|.++.+..+...+.
T Consensus 373 Wsl~~ghLl~tipf 386 (425)
T KOG2695|consen 373 WSLDSGHLLCTIPF 386 (425)
T ss_pred EecccCceeeccCC
Confidence 99999887766544
No 288
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.85 E-value=1.9e-06 Score=85.98 Aligned_cols=188 Identities=17% Similarity=0.140 Sum_probs=128.0
Q ss_pred CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe-cCCCC---C
Q 006220 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM-AGHLS---D 507 (656)
Q Consensus 432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~-~~~~~---~ 507 (656)
++..+++++.++.|..||..+++.+..+.. ..++.... ...+..+++++.++.++.+|..+++.+... ..... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV 112 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeecccccccccc
Confidence 567788888999999999999998877765 22222222 224566777778899999999999988774 32211 1
Q ss_pred eeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCC----------eEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 508 VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM----------ILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (656)
Q Consensus 508 V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~----------i~~l~~sp~g~~L~s~~~dg~I~iwD~~ 577 (656)
.........+..++++..++.|..+|.++|+.+......... +..-....++ .++.++.+|.+.-+|+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~ 191 (238)
T PF13360_consen 113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLA 191 (238)
T ss_dssp B--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETT
T ss_pred ccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECC
Confidence 122222334788999998999999999999998888764422 1122222344 77777777764444999
Q ss_pred CCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220 578 SGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625 (656)
Q Consensus 578 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~ 625 (656)
+++.+.... ...+..+ ....+..|+.++.++.|..||+.+++...
T Consensus 192 tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 192 TGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp TTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred CCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 998664333 2223332 34667788888899999999999988654
No 289
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.84 E-value=2.4e-06 Score=87.98 Aligned_cols=148 Identities=13% Similarity=0.133 Sum_probs=120.3
Q ss_pred EeeCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 347 FINTHNGLNCASISQDGSLVAGGFSDS-SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 347 ~~~~~~~V~~l~fs~dg~~La~g~~dg-~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
..++.++|.-..+..++.-++.|..|| .+-|++..+. ........-+.|.
T Consensus 355 qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~-----------------------------e~kr~e~~lg~I~ 405 (668)
T COG4946 355 QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG-----------------------------EVKRIEKDLGNIE 405 (668)
T ss_pred EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc-----------------------------eEEEeeCCccceE
Confidence 457788899999999988999999999 8999998752 3344555668899
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCC----cEEEEECCCCceeEEe
Q 006220 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR----TARIWSMDRIQPLRIM 501 (656)
Q Consensus 426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg----~i~lwd~~~~~~~~~~ 501 (656)
++..+++|++++.+.....|.+.|++++.....-+...+-|+.+.|+|+++++|-+--+| .|+++|+..++.....
T Consensus 406 av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 406 AVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred EEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec
Confidence 999999999999999999999999999988777677778899999999999999887654 6899999988766655
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEE
Q 006220 502 AGHLSDVDCVRWHINCNYIATGS 524 (656)
Q Consensus 502 ~~~~~~V~~v~~~p~~~~l~tgs 524 (656)
... +.=.+-+|.|++++|.--+
T Consensus 486 T~t-a~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 486 TPT-AYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CCc-ccccCcccCCCCcEEEEEe
Confidence 422 3334557889999887654
No 290
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.83 E-value=1.8e-09 Score=117.44 Aligned_cols=215 Identities=16% Similarity=0.245 Sum_probs=155.2
Q ss_pred EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
+|..+....+|++||-+.++|++|+..|.|+++++..+ .......+|.++|+
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG----------------------------~~e~s~ncH~SavT 1147 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG----------------------------SMEESVNCHQSAVT 1147 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCc----------------------------cccccccccccccc
Confidence 56778889999999999999999999999999998762 22234567999999
Q ss_pred EEEEccCCCEEEEEeCCC--eEEEEeccC-CceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe-
Q 006220 426 SASFSPLGDFILSSSADT--TIRLWSTKL-NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM- 501 (656)
Q Consensus 426 ~l~~spd~~~L~s~s~Dg--~I~lwd~~~-~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~- 501 (656)
-+.-+.+|..+++.+.-. -..+|++.. +...+.|. .-.++.|+.....-+.|+....+.+||+.+..++.++
T Consensus 1148 ~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tyl 1223 (1516)
T KOG1832|consen 1148 LVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYL 1223 (1516)
T ss_pred cccccCCcceeeeeccccCchHHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhc
Confidence 999999998777655433 467999864 34444444 3457889876555566666678999999998877653
Q ss_pred c---CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 502 A---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (656)
Q Consensus 502 ~---~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~ 578 (656)
. +..-.-++..|+|....++- || .+||++..+.++.|...+.. ..-.|+|+|..++..+. |||+++
T Consensus 1224 t~~~~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINSE-----IwD~RT 1292 (1516)
T KOG1832|consen 1224 TDTVTSSYSNNLAHFSPCDTLILN---DG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINSE-----IWDMRT 1292 (1516)
T ss_pred CcchhhhhhccccccCCCcceEee---Cc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeech-----hhhhHH
Confidence 2 12223478899998877764 44 37999998888777544422 23469999999888774 899999
Q ss_pred CeeeEeeeCCCccEEEEEEcCCCCEEE
Q 006220 579 GRCVTPLMGHTSCVWTLAYSCEGSLLA 605 (656)
Q Consensus 579 ~~~~~~~~~h~~~V~~l~~s~~~~~l~ 605 (656)
-+.++....-. -..+.|+..|.++.
T Consensus 1293 F~lLh~VP~Ld--qc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1293 FKLLHSVPSLD--QCAVTFNSTGDVMY 1317 (1516)
T ss_pred HHHHhcCcccc--ceEEEeccCccchh
Confidence 88776654322 13566766666544
No 291
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.81 E-value=5.9e-08 Score=92.69 Aligned_cols=176 Identities=21% Similarity=0.239 Sum_probs=110.1
Q ss_pred cCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCcee
Q 006220 334 LSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRS 413 (656)
Q Consensus 334 l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (656)
+|......-.+.++..+.+.-.|-+.+--++-+++|..||.+.+++.+.. .....
T Consensus 72 ~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~--~~~~~----------------------- 126 (319)
T KOG4714|consen 72 LWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKD--LALMS----------------------- 126 (319)
T ss_pred hhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHH--Hhhhh-----------------------
Confidence 34444444445555555555555556666788999999999999997641 11000
Q ss_pred eEEeecCccCEEEEEEccCCCEEEEEeC-----CCeEEEEeccCCceeEEeeCCCccEEEEEEecC-CCEEEEEECCCcE
Q 006220 414 YTLYQGHSGPVYSASFSPLGDFILSSSA-----DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ-GHYFASSSHDRTA 487 (656)
Q Consensus 414 ~~~l~~h~~~V~~l~~spd~~~L~s~s~-----Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~-~~~l~sgs~Dg~i 487 (656)
+.-..|.+. .+.++...++++.++.. -+..+.|+++..+.+...+.....|.+++-+|. .+.+++|+.||.+
T Consensus 127 -~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~ 204 (319)
T KOG4714|consen 127 -RIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIV 204 (319)
T ss_pred -hcccccccc-cccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeE
Confidence 000011111 11122222333333321 134566766544333222222334889999994 5567888899999
Q ss_pred EEEECCCCc-eeEEecCCCCCeeEEEEcC-CCCEEEEEECCCcEEEEeCCC
Q 006220 488 RIWSMDRIQ-PLRIMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWDVSS 536 (656)
Q Consensus 488 ~lwd~~~~~-~~~~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd~~~ 536 (656)
.+||.++.. +...+..|..++.-+-||| ++..|++++.||.+..||..+
T Consensus 205 ~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 205 GLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 999998763 4556678999999999998 678999999999999999764
No 292
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=6.9e-07 Score=93.59 Aligned_cols=265 Identities=14% Similarity=0.222 Sum_probs=162.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-----------CCcEEEEEcCCCCcccccccCCCCCCC------CCCccccCCCCCcee
Q 006220 351 HNGLNCASISQDGSLVAGGFS-----------DSSLKVWDMAKLGQQAVSSGLQGENDT------TPREDIIGPNGRKRS 413 (656)
Q Consensus 351 ~~~V~~l~fs~dg~~La~g~~-----------dg~I~Iwdl~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 413 (656)
+.+|.-+.|||+.+||++-+. ...+.|||+.++..........+.... .........- ....
T Consensus 249 Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm-~~~s 327 (698)
T KOG2314|consen 249 HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARM-TGNS 327 (698)
T ss_pred CCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEe-ccce
Confidence 346899999999999998653 146999999886554433221111000 0000000000 0000
Q ss_pred --------eEEeec---CccCEEEEEEccCCCEEEEEeCC-----CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCE
Q 006220 414 --------YTLYQG---HSGPVYSASFSPLGDFILSSSAD-----TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHY 477 (656)
Q Consensus 414 --------~~~l~~---h~~~V~~l~~spd~~~L~s~s~D-----g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 477 (656)
...+.+ .-..|...+|+|.+..|+.-+.. ..+.+-.+.+++.+.+-.-|+-.-+.+-|-.+|.+
T Consensus 328 isIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdy 407 (698)
T KOG2314|consen 328 ISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDY 407 (698)
T ss_pred EEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcE
Confidence 111111 23567888999998888754432 35777777777777766655544456777778888
Q ss_pred EEEEE----------CCCcEEEEECCCCc-eeEEecCCCCCeeEEEEcCCCCEEEEEEC---CCcEEEEeCCC-C---ee
Q 006220 478 FASSS----------HDRTARIWSMDRIQ-PLRIMAGHLSDVDCVRWHINCNYIATGSS---DKTVRLWDVSS-G---EC 539 (656)
Q Consensus 478 l~sgs----------~Dg~i~lwd~~~~~-~~~~~~~~~~~V~~v~~~p~~~~l~tgs~---dg~V~iwd~~~-~---~~ 539 (656)
|+.-- .-..+-|+.++... ++..+ .-...|...+|-|.|+.+++-+. ..++++|-+.+ + ..
T Consensus 408 LcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l 486 (698)
T KOG2314|consen 408 LCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL 486 (698)
T ss_pred EEEEEEeeccccccceEeeEEEEEeeccCCCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh
Confidence 87532 11234455554433 23332 34567889999999998877543 35788998873 2 22
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEE---CCCcEEEEeCCCCeeeEe-eeCCCccEEEEEEcCCCCEEEEEEC------
Q 006220 540 VRIFIGHRSMILSLAMSPDGRYMASGD---EDGTIMMWDLASGRCVTP-LMGHTSCVWTLAYSCEGSLLASGSA------ 609 (656)
Q Consensus 540 ~~~~~~h~~~i~~l~~sp~g~~L~s~~---~dg~I~iwD~~~~~~~~~-~~~h~~~V~~l~~s~~~~~l~sgs~------ 609 (656)
+..+. ....+.+.|+|.|++++.+. ..|.+.++|+....+... ...|. ..+.+.|.|.|+|+++++.
T Consensus 487 Vk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~wrhk~ 563 (698)
T KOG2314|consen 487 VKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSSSWRHKV 563 (698)
T ss_pred hhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc-ccccceECCCCCEEEEeeehhhhcc
Confidence 33332 34578899999999988864 578899999864222211 11232 4577899999999999985
Q ss_pred CCcEEEEeCCC
Q 006220 610 DCTVKLWDVTT 620 (656)
Q Consensus 610 Dg~I~iWd~~~ 620 (656)
|..-+||++..
T Consensus 564 d~GYri~tfqG 574 (698)
T KOG2314|consen 564 DNGYRIFTFQG 574 (698)
T ss_pred ccceEEEEeec
Confidence 44566777654
No 293
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.79 E-value=1.9e-06 Score=92.55 Aligned_cols=188 Identities=14% Similarity=0.057 Sum_probs=124.5
Q ss_pred CCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEE-----EEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCC--
Q 006220 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVW-----DVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHL-- 505 (656)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~-----~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~-- 505 (656)
+..++.++.+|.|..||..+++.+..+......+. +... .+..++.++.+|.+..+|..+++.+.......
T Consensus 145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~ 222 (377)
T TIGR03300 145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPK 222 (377)
T ss_pred CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCC
Confidence 45677788899999999999988776654332211 1111 13467788889999999998887664432110
Q ss_pred --CC---eeEEEEcC--CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 506 --SD---VDCVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (656)
Q Consensus 506 --~~---V~~v~~~p--~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~ 578 (656)
.. +..+.-+| .+..+++++.+|.++.||..+|+.+..... .. ..... ..+..++.++.+|.|..+|..+
T Consensus 223 g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~t 298 (377)
T TIGR03300 223 GRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA-SS-YQGPA--VDDNRLYVTDADGVVVALDRRS 298 (377)
T ss_pred CCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc-CC-ccCce--EeCCEEEEECCCCeEEEEECCC
Confidence 00 00011111 356788888999999999999988765542 11 12222 2467888888999999999999
Q ss_pred CeeeEeeeCCC-ccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecc
Q 006220 579 GRCVTPLMGHT-SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTE 628 (656)
Q Consensus 579 ~~~~~~~~~h~-~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~ 628 (656)
|+.+....... ....+... .+..+++++.+|.|++||..+++......
T Consensus 299 G~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 299 GSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLK 347 (377)
T ss_pred CcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 98776553211 11222222 36689999999999999999988876554
No 294
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.74 E-value=1.9e-07 Score=91.13 Aligned_cols=205 Identities=17% Similarity=0.338 Sum_probs=141.3
Q ss_pred CccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCc-e----eEEeeCCC------------ccEEEEEEecCC--CEEEE
Q 006220 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA-N----LVCYKGHN------------YPVWDVQFNPQG--HYFAS 480 (656)
Q Consensus 420 h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~-~----~~~~~~h~------------~~V~~l~~sp~~--~~l~s 480 (656)
....|+++.|...|.+|++|...|.|.+|.-.... | ...+++|. ..|..+.|..++ ..|+.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34678999999999999999999999999755332 1 22345554 247778887654 45888
Q ss_pred EECCCcEEEEECCCCc------------------------------------------eeEEe-cCCCCCeeEEEEcCCC
Q 006220 481 SSHDRTARIWSMDRIQ------------------------------------------PLRIM-AGHLSDVDCVRWHINC 517 (656)
Q Consensus 481 gs~Dg~i~lwd~~~~~------------------------------------------~~~~~-~~~~~~V~~v~~~p~~ 517 (656)
.+.|++|++|.+.... +.+.+ ..|.-.++++.|+.+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 8899999999875320 11222 3566678889998887
Q ss_pred CEEEEEECCCcEEEEeCCCCee---EEEEecCC-----CCeEEEEEcCC-CCEEEEEECCCcEEEEeCCCCee------e
Q 006220 518 NYIATGSSDKTVRLWDVSSGEC---VRIFIGHR-----SMILSLAMSPD-GRYMASGDEDGTIMMWDLASGRC------V 582 (656)
Q Consensus 518 ~~l~tgs~dg~V~iwd~~~~~~---~~~~~~h~-----~~i~~l~~sp~-g~~L~s~~~dg~I~iwD~~~~~~------~ 582 (656)
..++++ .|=.|.+|++.-... +.-++.|. .-|++..|+|. ...+.-.+..|.|++-|++.... +
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 777765 577899998864321 22233343 35888899995 34566667789999999984321 1
Q ss_pred Ee----------eeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceee
Q 006220 583 TP----------LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLK 626 (656)
Q Consensus 583 ~~----------~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~ 626 (656)
.. +.+-...|..+.|+++|+++++-+. .+|+|||+...+....
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pik 316 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIK 316 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCce
Confidence 11 1122356888999999999987654 4899999988665443
No 295
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.72 E-value=4.9e-08 Score=104.88 Aligned_cols=203 Identities=25% Similarity=0.358 Sum_probs=149.1
Q ss_pred ccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCC--ccEEEEEEecCC--CEEEEEECCCcEEEEECCCC-
Q 006220 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHN--YPVWDVQFNPQG--HYFASSSHDRTARIWSMDRI- 495 (656)
Q Consensus 421 ~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~--~~V~~l~~sp~~--~~l~sgs~Dg~i~lwd~~~~- 495 (656)
.+++..++.+|.|+-++.++.-| +.+.|++..-..-.+-.|- -.|-++.|+|.. .+-++........+|++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 36778899999999999998877 6667776443322222232 346678888853 45555555667788987543
Q ss_pred --ceeEEecCCCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCe-eEEEEecCCCCeEEEEEcCCCCEEEEEECCCcE
Q 006220 496 --QPLRIMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGE-CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTI 571 (656)
Q Consensus 496 --~~~~~~~~~~~~V~~v~~~p~~-~~l~tgs~dg~V~iwd~~~~~-~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I 571 (656)
..-..+.+|...|+.+.|+|.. ..+++++.|..|..||+++.. ++..+..-....+.++|+-....+.+.+..+.|
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 2334566999999999999854 578899999999999999753 455554444567788998754445555566789
Q ss_pred EEEeCCCC-eeeEeeeCCCccEEEEEEcC-CCCEEEEEECCCcEEEEeCCCCCce
Q 006220 572 MMWDLASG-RCVTPLMGHTSCVWTLAYSC-EGSLLASGSADCTVKLWDVTTSTKV 624 (656)
Q Consensus 572 ~iwD~~~~-~~~~~~~~h~~~V~~l~~s~-~~~~l~sgs~Dg~I~iWd~~~~~~~ 624 (656)
.+||++.| .++..+++|...|++++|.. ....+.+++.||+|++||.......
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e 237 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE 237 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc
Confidence 99999876 57788889999999999976 3456889999999999999876554
No 296
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.72 E-value=2.1e-06 Score=92.17 Aligned_cols=175 Identities=15% Similarity=0.069 Sum_probs=117.4
Q ss_pred CEEEEEeCCCeEEEEeccCCceeEEeeCCCc-------cEEEEEEec--CCCEEEEEECCCcEEEEECCCCceeEEecCC
Q 006220 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNY-------PVWDVQFNP--QGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (656)
Q Consensus 434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~-------~V~~l~~sp--~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~ 504 (656)
..++.++.+|.+..+|..+++.+........ ....+.-+| .+..+++++.+|.++.||..+++.+......
T Consensus 191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~ 270 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS 270 (377)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC
Confidence 4677888889999999988876654321100 000111111 3567888889999999999998876655421
Q ss_pred CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCC-CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeE
Q 006220 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583 (656)
Q Consensus 505 ~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~-~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~ 583 (656)
...... ..+..+++++.+|.+..+|..+|+.+........ ...+... .+..|++++.+|.|.+||..+|+.+.
T Consensus 271 --~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 271 --SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVA 344 (377)
T ss_pred --CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 111122 2467888888999999999999988765532211 2222222 36789999999999999999999998
Q ss_pred eeeCCCccEEE-EEEcCCCCEEEEEECCCcEEEE
Q 006220 584 PLMGHTSCVWT-LAYSCEGSLLASGSADCTVKLW 616 (656)
Q Consensus 584 ~~~~h~~~V~~-l~~s~~~~~l~sgs~Dg~I~iW 616 (656)
++..+...+.+ ..+. + ..|+.++.||.|..|
T Consensus 345 ~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 345 RLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 88766543322 2232 3 358889999998875
No 297
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.72 E-value=6e-09 Score=113.56 Aligned_cols=200 Identities=16% Similarity=0.230 Sum_probs=153.4
Q ss_pred eeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCC--cEEE
Q 006220 412 RSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR--TARI 489 (656)
Q Consensus 412 ~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg--~i~l 489 (656)
+..+.+..|....+|++|+-+.++|+.|+..|.|+++++.+|.....+.+|+++|+-+.-+.+|...++.+.-. -..+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 45566778999999999999999999999999999999999999999999999999999999999877766433 4678
Q ss_pred EECCC-CceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEE-ec---CCCCeEEEEEcCCCCEEEE
Q 006220 490 WSMDR-IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF-IG---HRSMILSLAMSPDGRYMAS 564 (656)
Q Consensus 490 wd~~~-~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~-~~---h~~~i~~l~~sp~g~~L~s 564 (656)
|+... +.+.+.|.+ -.++.|+.....-+.|+......+||++++..+.++ .+ ....-++..|||+..+++
T Consensus 1172 W~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred hccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence 98754 444555543 457888876666677777778999999999877653 22 122336788999988776
Q ss_pred EECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceee
Q 006220 565 GDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLK 626 (656)
Q Consensus 565 ~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~ 626 (656)
.|| .+||.+..+.++.+...+..+ .-.|+|.|.-++.-+. |||+++-..+..
T Consensus 1247 --ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE-----IwD~RTF~lLh~ 1298 (1516)
T KOG1832|consen 1247 --NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE-----IWDMRTFKLLHS 1298 (1516)
T ss_pred --eCc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech-----hhhhHHHHHHhc
Confidence 455 479999887777765444222 3359999998887764 899987655443
No 298
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.71 E-value=5.2e-08 Score=96.49 Aligned_cols=159 Identities=13% Similarity=0.188 Sum_probs=124.0
Q ss_pred EEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCC-----ceeEEecCCCCCeeEE
Q 006220 437 LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-----QPLRIMAGHLSDVDCV 511 (656)
Q Consensus 437 ~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~-----~~~~~~~~~~~~V~~v 511 (656)
++.+.+-.|-+-++.++... .+. ..+.|.++.|...++.+..|+.+|.|..+|++.. .+...+ -|.+.|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhh
Confidence 55666777999998876432 233 5667899999998999999999999999999864 334444 388999999
Q ss_pred EEcC-CCCEEEEEECCCcEEEEeCCCCee---EEEEecCCCCeEE--EEEcCCCCEEEEEECCCcEEEEeCCCCeeeEee
Q 006220 512 RWHI-NCNYIATGSSDKTVRLWDVSSGEC---VRIFIGHRSMILS--LAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL 585 (656)
Q Consensus 512 ~~~p-~~~~l~tgs~dg~V~iwd~~~~~~---~~~~~~h~~~i~~--l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~ 585 (656)
..-. ++++|.+.+.+|+|.+||.+--++ ++.+.||...-.- +...+....+++++.|...+||.+++|..+.++
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 8776 788999999999999999997776 8889988653322 334566778999999999999999999999887
Q ss_pred eCCC----ccEEEEEEc
Q 006220 586 MGHT----SCVWTLAYS 598 (656)
Q Consensus 586 ~~h~----~~V~~l~~s 598 (656)
.... ..+++++|.
T Consensus 385 pf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 385 PFPYSASEVDIPSVAFD 401 (425)
T ss_pred CCCCccccccccceehh
Confidence 6432 245566664
No 299
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=3.2e-07 Score=100.18 Aligned_cols=181 Identities=16% Similarity=0.172 Sum_probs=135.2
Q ss_pred cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 006220 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~ 501 (656)
..++|++++ +++|+.|+.+|.|++.+.... . .....|... ..+|.|+++||.||++.|-.+.+.+....+
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 556777777 689999999999999998733 3 333345433 558999999999999999998887776666
Q ss_pred cCCCCCeeEEEEcCC-----CCEEEEEECCCcEEEEeCCCC--eeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 006220 502 AGHLSDVDCVRWHIN-----CNYIATGSSDKTVRLWDVSSG--ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMW 574 (656)
Q Consensus 502 ~~~~~~V~~v~~~p~-----~~~l~tgs~dg~V~iwd~~~~--~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iw 574 (656)
. ...++.+|+++|+ .+.+++|+.-| +.++.-+-- +.........++|.++.|. |.++|-++.+| |++|
T Consensus 110 d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vy 184 (846)
T KOG2066|consen 110 D-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVY 184 (846)
T ss_pred e-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEE
Confidence 5 3478999999997 57899999888 878764321 1111355667899999997 88999998877 8999
Q ss_pred eCCCCeeeEeeeCCCcc------EEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 575 DLASGRCVTPLMGHTSC------VWTLAYSCEGSLLASGSADCTVKLWDVT 619 (656)
Q Consensus 575 D~~~~~~~~~~~~h~~~------V~~l~~s~~~~~l~sgs~Dg~I~iWd~~ 619 (656)
|+.+++.+..+...... -..+.|.++.+ |+.|- ..+|+|..++
T Consensus 185 d~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 185 DTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGW-GDSVKICSIK 233 (846)
T ss_pred eccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEec-CCeEEEEEEe
Confidence 99999888777543322 34678877654 44444 3478999887
No 300
>KOG1333 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=4e-08 Score=89.69 Aligned_cols=176 Identities=15% Similarity=0.129 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHHhcCCCCCCCCCCCCCCchhhcccccccccccCChhhHHHHHHHHHHHHhccc-
Q 006220 4 LQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSL- 82 (656)
Q Consensus 4 ~~~~~~v~~yl~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~sl- 82 (656)
+.++.+|.+||.-|||+.|.++|.+|++..+.++-.++. |-+.+..- .+-.|-+.....+..|.+-|.++|
T Consensus 6 ~~tDelvReYL~frgf~~tLkalD~E~~~~Ke~~frvdr-------ivdq~~~a-~q~~Dl~aLr~~W~~l~~r~Fs~Le 77 (241)
T KOG1333|consen 6 ERTDELVREYLLFRGFTHTLKALDAEIKADKEKGFRVDR-------IVDQLQQA-MQVYDLAALRDYWSYLERRLFSRLE 77 (241)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHHHhhhhhcCCcHHH-------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467999999999999999999999999876653322211 11222111 123577888889999999999999
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhHHhhHHHHHHHhcCCChhhhccCHHHHHhhcCceEEEE
Q 006220 83 DLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKI 162 (656)
Q Consensus 83 d~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~v~~ 162 (656)
++|++...++=-.+|-+....-|++++++.|.+||+|-+.+... +.+++.+....--.|.++.|..+.|....+.-..
T Consensus 78 ~~y~~~~~kle~Sl~r~yLV~~~q~nr~~K~~EFF~K~a~~lqn--q~eWkDWF~fPf~~~a~~tppf~~~F~ktw~e~~ 155 (241)
T KOG1333|consen 78 DIYRPTIHKLETSLFRFYLVYTIQTNRNDKAQEFFAKQATELQN--QAEWKDWFVLPFLPSAKDTPPFRKYFDKTWIEIY 155 (241)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhc--chhhhhheecccCCCCCCCccHHHHHHhhhhHhh
Confidence 79999999999999999999999999999999999999988765 7889999999988999999999999888887777
Q ss_pred chhhHHHHHHHHhhCCcchHhHhhcce
Q 006220 163 CQYSYELLLQYLHKTQSTKMLGIINER 189 (656)
Q Consensus 163 ~~~~~~~l~~~l~~~~~~~~~~i~~~~ 189 (656)
--...++|-.-++.....+|++|..+.
T Consensus 156 ~~sl~Nflst~~qc~p~pvi~~~~~e~ 182 (241)
T KOG1333|consen 156 YVSLHNFLSTLFQCMPVPVILNFDAEC 182 (241)
T ss_pred hhhHHhHHHHHHHcCCcceeehHHHHH
Confidence 777778888888888888888877654
No 301
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.69 E-value=2.4e-05 Score=78.64 Aligned_cols=191 Identities=15% Similarity=0.135 Sum_probs=128.9
Q ss_pred EEEEcc-CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEe-cCCCEEEEEECCCcEEEEECCCCceeEEecC
Q 006220 426 SASFSP-LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN-PQGHYFASSSHDRTARIWSMDRIQPLRIMAG 503 (656)
Q Consensus 426 ~l~~sp-d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~s-p~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~ 503 (656)
++.|.+ ++.++++-...+.|..|+..++.... +.... ..++.+. ++ ..++.+...+ +.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 578888 66677777778999999998765543 33222 6677787 55 4555565544 55569888755444332
Q ss_pred -----CCCCeeEEEEcCCCCEEEEEECC--------CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEE-EEECCC
Q 006220 504 -----HLSDVDCVRWHINCNYIATGSSD--------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMA-SGDEDG 569 (656)
Q Consensus 504 -----~~~~V~~v~~~p~~~~l~tgs~d--------g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~-s~~~dg 569 (656)
.....+.+++.|+|+..++.... |.|..++.. ++...... .-...+.|+|+|+++.|+ +-+..+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccc
Confidence 34567889999999977775543 557888877 55544443 345678999999999776 556778
Q ss_pred cEEEEeCCCCe-------eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCce
Q 006220 570 TIMMWDLASGR-------CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKV 624 (656)
Q Consensus 570 ~I~iwD~~~~~-------~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~ 624 (656)
.|..+++.... .+..+....+..-.+++..+|++.++....+.|.+++.. ++..
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~ 217 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLL 217 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEE
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEE
Confidence 89999985322 122222222457889999999998888889999999977 5543
No 302
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.69 E-value=2.7e-06 Score=81.88 Aligned_cols=195 Identities=12% Similarity=0.029 Sum_probs=133.5
Q ss_pred CCEEEEEeCCCeEEEEeccCCcee-EEeeCCCccEEEEEE-ecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeE
Q 006220 433 GDFILSSSADTTIRLWSTKLNANL-VCYKGHNYPVWDVQF-NPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC 510 (656)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~~-~~~~~h~~~V~~l~~-sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~ 510 (656)
..+|+.|+..|...+|...+.+.. .....|...|.-+.= .-...-+..++.|.++++.+++.+..........-.+.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 457999999999999999866543 222334333322211 112234667788889988888755433222111122788
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCCe--eEEE-EecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEe---
Q 006220 511 VRWHINCNYIATGSSDKTVRLWDVSSGE--CVRI-FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTP--- 584 (656)
Q Consensus 511 v~~~p~~~~l~tgs~dg~V~iwd~~~~~--~~~~-~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~--- 584 (656)
+++++++.++++.+....|-.|.+.... .+++ .......-.+..|+.....+|+++.||++.|||++.......
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s 243 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS 243 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc
Confidence 9999999999999999999999886532 2332 223334456788999999999999999999999987543322
Q ss_pred --eeCCCccEEEEEEcCCCC--EEEEEECCCcEEEEeCCCCCceeec
Q 006220 585 --LMGHTSCVWTLAYSCEGS--LLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 585 --~~~h~~~V~~l~~s~~~~--~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
-..|.+.+..+.|++.|. +|...-.-+.+.+-|+++....+..
T Consensus 244 strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 244 STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI 290 (344)
T ss_pred ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence 235889999999998653 4554445678999999987765433
No 303
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.68 E-value=2.8e-06 Score=83.03 Aligned_cols=200 Identities=14% Similarity=0.172 Sum_probs=114.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCC
Q 006220 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLG 433 (656)
Q Consensus 354 V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~ 433 (656)
=.-++||||+.+||.+...|+|+++|+............ .....-...|.++.|.+-.
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~----------------------~~~~d~~~Aiagl~Fl~~~ 103 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAM----------------------SFPGDLSDAIAGLIFLEYK 103 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCccc----------------------ccCCccccceeeeEeeccc
Confidence 356789999999999999999999998753221111000 0000123455555554321
Q ss_pred ------CEEEEEeCCCeEEEEeccCC-----ceeEEee--C-CCccEEEEEEecCCCEEEEEECCCc-----------EE
Q 006220 434 ------DFILSSSADTTIRLWSTKLN-----ANLVCYK--G-HNYPVWDVQFNPQGHYFASSSHDRT-----------AR 488 (656)
Q Consensus 434 ------~~L~s~s~Dg~I~lwd~~~~-----~~~~~~~--~-h~~~V~~l~~sp~~~~l~sgs~Dg~-----------i~ 488 (656)
..|++-..+|.++-|-+..+ +....+. . +...|.++.|+|..+.|++||.... +.
T Consensus 104 ~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLt 183 (282)
T PF15492_consen 104 KSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLT 183 (282)
T ss_pred cccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCce
Confidence 24666667787777765332 2222322 2 3668999999999888888874322 22
Q ss_pred EEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 006220 489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED 568 (656)
Q Consensus 489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d 568 (656)
.|.+-+..|-.... . ..+...-.... +-.+|.+-+.............|..|..||||..||+...+
T Consensus 184 aWRiL~~~Pyyk~v---------~-~~~~~~~~~~~---~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~s 250 (282)
T PF15492_consen 184 AWRILSDSPYYKQV---------T-SSEDDITASSK---RRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFS 250 (282)
T ss_pred EEEEcCCCCcEEEc---------c-ccCcccccccc---ccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcC
Confidence 22222211111100 0 00000111111 11233333222222122345689999999999999999999
Q ss_pred CcEEEEeCCCCeeeEeeeCC
Q 006220 569 GTIMMWDLASGRCVTPLMGH 588 (656)
Q Consensus 569 g~I~iwD~~~~~~~~~~~~h 588 (656)
|.|.+|++.+-++...+.-+
T Consensus 251 G~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 251 GSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred CeEEEEecCcchhhcccchh
Confidence 99999999988777766543
No 304
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=7.4e-07 Score=97.42 Aligned_cols=180 Identities=14% Similarity=0.257 Sum_probs=130.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (656)
Q Consensus 352 ~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 431 (656)
..++|++++ +++||.|+.+|.|++++.+.. . .....|+.. ..
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-----------------------------~-~~~~~~s~~------~~ 81 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGN-----------------------------P-KTNFDHSSS------IL 81 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCc-----------------------------c-ccccccccc------cc
Confidence 457777775 678999999999999997741 1 222234443 56
Q ss_pred CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecC-----CCEEEEEECCCcEEEEECC---CCceeEEecC
Q 006220 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ-----GHYFASSSHDRTARIWSMD---RIQPLRIMAG 503 (656)
Q Consensus 432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~-----~~~l~sgs~Dg~i~lwd~~---~~~~~~~~~~ 503 (656)
+|.+++|||.||+|.|-.+.+.+....+. ...++.+++++|+ ...|++||.-| +.++.-. ....+ ....
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~ 158 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSE 158 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeec
Confidence 79999999999999999999888777666 4568999999997 56799999888 7776532 22222 4455
Q ss_pred CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCC------eEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM------ILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (656)
Q Consensus 504 ~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~------i~~l~~sp~g~~L~s~~~dg~I~iwD~~ 577 (656)
..++|.++.|. |+++|-++.+ -|++||+.+++.+..+...... -..+.|.++.+ |+.| ...+|+|..++
T Consensus 159 ~eG~I~~i~W~--g~lIAWand~-Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 159 GEGPIHSIKWR--GNLIAWANDD-GVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIK 233 (846)
T ss_pred CccceEEEEec--CcEEEEecCC-CcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEe
Confidence 67899999995 6788888765 4899999988777655433222 23577776654 4444 44578888887
No 305
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.67 E-value=3e-05 Score=80.84 Aligned_cols=196 Identities=14% Similarity=0.137 Sum_probs=121.6
Q ss_pred EccCCCEEEEEeC----------CCeEEEEeccCCceeEEeeCC-------CccEEEEEEecCCCEEEEEE-C-CCcEEE
Q 006220 429 FSPLGDFILSSSA----------DTTIRLWSTKLNANLVCYKGH-------NYPVWDVQFNPQGHYFASSS-H-DRTARI 489 (656)
Q Consensus 429 ~spd~~~L~s~s~----------Dg~I~lwd~~~~~~~~~~~~h-------~~~V~~l~~sp~~~~l~sgs-~-Dg~i~l 489 (656)
+|||++.|+.+.. +..|.+||..+.+.+..+... ...-..++++|+|+++++.. . +..+.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999998876655 789999999999998777642 22234789999999998776 3 789999
Q ss_pred EECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-CeeE----EEEecCCCCeE-EEEEcC-CCCEE
Q 006220 490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECV----RIFIGHRSMIL-SLAMSP-DGRYM 562 (656)
Q Consensus 490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~-~~~~----~~~~~h~~~i~-~l~~sp-~g~~L 562 (656)
.|+.+++.+..+.... ...-...+.+..+ +-+.||......+.+ |+.. ..|.+...++. .-.|++ +|+++
T Consensus 133 vD~~~~kvv~ei~vp~-~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~ 209 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPD-CYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLV 209 (352)
T ss_pred EECCCCcEEEEEeCCC-CcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEE
Confidence 9999999888776421 1222222222222 222344444433321 2211 11111111110 014456 88888
Q ss_pred EEEECCCcEEEEeCCCC-----eeeEeeeC-------CCccEEEEEEcCCCCEEEEEE----------CCCcEEEEeCCC
Q 006220 563 ASGDEDGTIMMWDLASG-----RCVTPLMG-------HTSCVWTLAYSCEGSLLASGS----------ADCTVKLWDVTT 620 (656)
Q Consensus 563 ~s~~~dg~I~iwD~~~~-----~~~~~~~~-------h~~~V~~l~~s~~~~~l~sgs----------~Dg~I~iWd~~~ 620 (656)
+.... |.|.+.|+... .....+.. ..+.+.-++++++++.+.... ..+.|.++|..+
T Consensus 210 ~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t 288 (352)
T TIGR02658 210 WPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT 288 (352)
T ss_pred EEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC
Confidence 88776 99999996432 22222211 223445599999999887743 225799999998
Q ss_pred CCceeecc
Q 006220 621 STKVLKTE 628 (656)
Q Consensus 621 ~~~~~~~~ 628 (656)
.+.+....
T Consensus 289 ~kvi~~i~ 296 (352)
T TIGR02658 289 GKRLRKIE 296 (352)
T ss_pred CeEEEEEe
Confidence 88776554
No 306
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=2.8e-07 Score=94.28 Aligned_cols=251 Identities=15% Similarity=0.161 Sum_probs=174.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (656)
Q Consensus 350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 429 (656)
|...|+.+. ..-.+++.+++.||.++.|.-... .....+.-+..|-+.|.+++.
T Consensus 8 hrd~i~hv~-~tka~fiiqASlDGh~KFWkKs~i-------------------------sGvEfVKhFraHL~~I~sl~~ 61 (558)
T KOG0882|consen 8 HRDVITHVF-PTKAKFIIQASLDGHKKFWKKSRI-------------------------SGVEFVKHFRAHLGVILSLAV 61 (558)
T ss_pred ccceeeeEe-eehhheEEeeecchhhhhcCCCCc-------------------------cceeehhhhHHHHHHHHhhhc
Confidence 444455443 345789999999999999985420 011233446678899999999
Q ss_pred ccCCCEEEEEeC-CCeEEEEeccCCceeEEeeCCCccEEEEEEecCC---CEEEEE-ECCCcEEEEECCCCc-e-eEEec
Q 006220 430 SPLGDFILSSSA-DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG---HYFASS-SHDRTARIWSMDRIQ-P-LRIMA 502 (656)
Q Consensus 430 spd~~~L~s~s~-Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~---~~l~sg-s~Dg~i~lwd~~~~~-~-~~~~~ 502 (656)
+-++..+.|++. |..++++|+.+...+.-++.-.-|=.+-.+...| ..++++ -.+|.+.++|-.... + ...-.
T Consensus 62 S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkk 141 (558)
T KOG0882|consen 62 SYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKK 141 (558)
T ss_pred cccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecc
Confidence 999999999777 9999999998766554333222221111122223 133333 367899999975443 2 33334
Q ss_pred CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC------CeeE---------EEEecCCCCeEEEEEcCCCCEEEEEEC
Q 006220 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS------GECV---------RIFIGHRSMILSLAMSPDGRYMASGDE 567 (656)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~------~~~~---------~~~~~h~~~i~~l~~sp~g~~L~s~~~ 567 (656)
-|.++|.++.+.|.+..+++....|.|.-|.... .+.. ..+.......+++.|+|+|..+.+-+.
T Consensus 142 lH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~ 221 (558)
T KOG0882|consen 142 LHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP 221 (558)
T ss_pred cccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCc
Confidence 6999999999999999999999999999998762 1111 112234567889999999999999999
Q ss_pred CCcEEEEeCCCCeeeEeee--------------------------------CCC-ccEEEEEEcCCCCEEEEEECCCcEE
Q 006220 568 DGTIMMWDLASGRCVTPLM--------------------------------GHT-SCVWTLAYSCEGSLLASGSADCTVK 614 (656)
Q Consensus 568 dg~I~iwD~~~~~~~~~~~--------------------------------~h~-~~V~~l~~s~~~~~l~sgs~Dg~I~ 614 (656)
|..|+++++.+|+.+..+. .|. ..-+.+.|...|++|+-|+-=| |+
T Consensus 222 DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ik 300 (558)
T KOG0882|consen 222 DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IK 300 (558)
T ss_pred ccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EE
Confidence 9999999999887654331 122 2234677888899998887654 88
Q ss_pred EEeCCCCCceeec
Q 006220 615 LWDVTTSTKVLKT 627 (656)
Q Consensus 615 iWd~~~~~~~~~~ 627 (656)
|.++.+++....+
T Consensus 301 vin~~tn~v~ri~ 313 (558)
T KOG0882|consen 301 VINLDTNTVVRIL 313 (558)
T ss_pred EEEeecCeEEEEe
Confidence 9999888776543
No 307
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.63 E-value=1.5e-06 Score=94.28 Aligned_cols=247 Identities=12% Similarity=0.094 Sum_probs=167.5
Q ss_pred eeCCCCeEEEEEcCC------------CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeE
Q 006220 348 INTHNGLNCASISQD------------GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYT 415 (656)
Q Consensus 348 ~~~~~~V~~l~fs~d------------g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (656)
-.|...|+.+.|.|- .-+||++...|.|.+||.... ....
T Consensus 52 e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~----------------------------s~~~ 103 (1062)
T KOG1912|consen 52 ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA----------------------------SVIN 103 (1062)
T ss_pred ccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh----------------------------hhhh
Confidence 345577999999862 125788888999999998641 1233
Q ss_pred EeecCccCEEEEEEcc---CC-CEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEec-CCCEEEEEECCCcEEEE
Q 006220 416 LYQGHSGPVYSASFSP---LG-DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIW 490 (656)
Q Consensus 416 ~l~~h~~~V~~l~~sp---d~-~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~lw 490 (656)
.+..|..+|..++|-+ ++ ..|+.-....+|.+|+..+|+....+.-......|+.+.| +.+.|..-+..|.+.+-
T Consensus 104 ~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~ 183 (1062)
T KOG1912|consen 104 WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSC 183 (1062)
T ss_pred hhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEE
Confidence 4566888999999976 33 3566667778999999999999988877677788899999 56667777777877777
Q ss_pred ECCC-------CceeEEecCCCC------------C-------------eeEEEEcCCCCEEEEEECCCcEEEEeCCCCe
Q 006220 491 SMDR-------IQPLRIMAGHLS------------D-------------VDCVRWHINCNYIATGSSDKTVRLWDVSSGE 538 (656)
Q Consensus 491 d~~~-------~~~~~~~~~~~~------------~-------------V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~ 538 (656)
+.-. ++...+-..|.. . ...++|+|.-+.++...-...+.++|++-..
T Consensus 184 ~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~ 263 (1062)
T KOG1912|consen 184 KDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYEC 263 (1062)
T ss_pred eccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhc
Confidence 6531 223333333322 0 1135678866666666678899999999888
Q ss_pred eEEEEecCCCCeEEEEEcCCCC--EEEEEECCCcEEEEeCCCCe----------------eeEeeeC-CCccEEEEEEcC
Q 006220 539 CVRIFIGHRSMILSLAMSPDGR--YMASGDEDGTIMMWDLASGR----------------CVTPLMG-HTSCVWTLAYSC 599 (656)
Q Consensus 539 ~~~~~~~h~~~i~~l~~sp~g~--~L~s~~~dg~I~iwD~~~~~----------------~~~~~~~-h~~~V~~l~~s~ 599 (656)
++....-..+.+.-+.+-|+++ .|+++..||.+.+|-.+... .+..+.. ..-.+......|
T Consensus 264 ~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cP 343 (1062)
T KOG1912|consen 264 CLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCP 343 (1062)
T ss_pred eeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCC
Confidence 8888877777777788888764 79999999999999765421 1111110 011112222334
Q ss_pred C-CCEEEEEECCCcEEEEeCCCCC
Q 006220 600 E-GSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 600 ~-~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
. ...++.--.+|.+.+|.+.+++
T Consensus 344 s~~sa~avl~s~g~~~~w~l~~~r 367 (1062)
T KOG1912|consen 344 STPSALAVLYSSGDSTFWQLSNGR 367 (1062)
T ss_pred CChhhhhhhhhcchhHHHhhhcCC
Confidence 3 3344444567888999998654
No 308
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.62 E-value=3.2e-07 Score=87.75 Aligned_cols=163 Identities=18% Similarity=0.235 Sum_probs=107.9
Q ss_pred EeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCcee-EEeeCCCccEEEEEEecCCCEEEEEE-----CCCcEEE
Q 006220 416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL-VCYKGHNYPVWDVQFNPQGHYFASSS-----HDRTARI 489 (656)
Q Consensus 416 ~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~-~~~~~h~~~V~~l~~sp~~~~l~sgs-----~Dg~i~l 489 (656)
.+.-|+++-.+-..+-.+..++++..||.+.+++.+.-..+ ..+..-...-.+.+....++.+.++. .-+..+.
T Consensus 84 ~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a 163 (319)
T KOG4714|consen 84 VLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYA 163 (319)
T ss_pred eeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceee
Confidence 33355554444444445677999999999999997742111 11111111122333444555555543 2245667
Q ss_pred EECCCCceeEEecCCCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCe-eEEEEecCCCCeEEEEEcC-CCCEEEEEE
Q 006220 490 WSMDRIQPLRIMAGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGE-CVRIFIGHRSMILSLAMSP-DGRYMASGD 566 (656)
Q Consensus 490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~-~~l~tgs~dg~V~iwd~~~~~-~~~~~~~h~~~i~~l~~sp-~g~~L~s~~ 566 (656)
|+++..+....-......|.+++-||.. +.+++|+.||.+-+||.++.. ++..+..|+.+|..+-|+| ++..|++++
T Consensus 164 ~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s 243 (319)
T KOG4714|consen 164 NTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS 243 (319)
T ss_pred ecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec
Confidence 7776544433333333459999999854 566788999999999999874 3455678999999999999 578999999
Q ss_pred CCCcEEEEeCCC
Q 006220 567 EDGTIMMWDLAS 578 (656)
Q Consensus 567 ~dg~I~iwD~~~ 578 (656)
+||.+..||..+
T Consensus 244 edGslw~wdas~ 255 (319)
T KOG4714|consen 244 EDGSLWHWDAST 255 (319)
T ss_pred CCCcEEEEcCCC
Confidence 999999999754
No 309
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.56 E-value=1.6e-06 Score=95.80 Aligned_cols=148 Identities=16% Similarity=0.288 Sum_probs=117.2
Q ss_pred CEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC---------CCcEEEEECC
Q 006220 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH---------DRTARIWSMD 493 (656)
Q Consensus 423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~---------Dg~i~lwd~~ 493 (656)
.|.-+.. +++++.+|...|+|.+-|.++.+.++.+..|++.|.++.. .|+.+++||. |..|+|||++
T Consensus 179 ~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLR 254 (1118)
T KOG1275|consen 179 GVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLR 254 (1118)
T ss_pred ceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhh
Confidence 4655555 4789999999999999999999999999999999987666 5899999984 6678999998
Q ss_pred CCceeEEecCCCCCeeEEEEcCC-CCEEEEEECCCcEEEEeCCC---C-eeEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 006220 494 RIQPLRIMAGHLSDVDCVRWHIN-CNYIATGSSDKTVRLWDVSS---G-ECVRIFIGHRSMILSLAMSPDGRYMASGDED 568 (656)
Q Consensus 494 ~~~~~~~~~~~~~~V~~v~~~p~-~~~l~tgs~dg~V~iwd~~~---~-~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d 568 (656)
..+.+.-+.-+.++ .-+.|+|. ...+++++..|.+.+.|..+ . .-+..+....+.+..+++|++|+.|+.|..+
T Consensus 255 mmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~ 333 (1118)
T KOG1275|consen 255 MMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHE 333 (1118)
T ss_pred hhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEeccc
Confidence 87766555544333 66788885 45788888999999999432 2 1233334445569999999999999999999
Q ss_pred CcEEEEe
Q 006220 569 GTIMMWD 575 (656)
Q Consensus 569 g~I~iwD 575 (656)
|.|.+|-
T Consensus 334 g~v~~wa 340 (1118)
T KOG1275|consen 334 GHVNLWA 340 (1118)
T ss_pred CcEeeec
Confidence 9999997
No 310
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.56 E-value=0.00012 Score=73.79 Aligned_cols=228 Identities=16% Similarity=0.163 Sum_probs=151.1
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCc-EEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEc
Q 006220 353 GLNCASISQ-DGSLVAGGFSDSS-LKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFS 430 (656)
Q Consensus 353 ~V~~l~fs~-dg~~La~g~~dg~-I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 430 (656)
....++.+| ++..+|.+-.-|. ..+||..+........ ...-+.+.||. .||
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~--------------------a~~gRHFyGHg------~fs 59 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW--------------------APPGRHFYGHG------VFS 59 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc--------------------CCCCCEEecCE------EEc
Confidence 345677888 5666777766665 6788887643322111 01223455664 699
Q ss_pred cCCCEEEEEeC-----CCeEEEEecc-CCceeEEeeCCCccEEEEEEecCCCEEEEEEC------------------CCc
Q 006220 431 PLGDFILSSSA-----DTTIRLWSTK-LNANLVCYKGHNYPVWDVQFNPQGHYFASSSH------------------DRT 486 (656)
Q Consensus 431 pd~~~L~s~s~-----Dg~I~lwd~~-~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~------------------Dg~ 486 (656)
+||++|++.-. .|.|-|||.. +...+..+..|.-.-..+.+.|+|..|+++-. +.+
T Consensus 60 ~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~ps 139 (305)
T PF07433_consen 60 PDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPS 139 (305)
T ss_pred CCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCc
Confidence 99999987644 4789999999 66778888888777788999999988777631 233
Q ss_pred EEEEECCCCceeEE--e--cCCCCCeeEEEEcCCCCEEEEEECCC-------cEEEEeCCCCeeEEEEe-------cCCC
Q 006220 487 ARIWSMDRIQPLRI--M--AGHLSDVDCVRWHINCNYIATGSSDK-------TVRLWDVSSGECVRIFI-------GHRS 548 (656)
Q Consensus 487 i~lwd~~~~~~~~~--~--~~~~~~V~~v~~~p~~~~l~tgs~dg-------~V~iwd~~~~~~~~~~~-------~h~~ 548 (656)
+...|..+++.+.. + ..|...|..+++.++|..++..-..| -|-+++ .+..+..+. .-.+
T Consensus 140 L~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~ 217 (305)
T PF07433_consen 140 LVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNG 217 (305)
T ss_pred eEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCC
Confidence 55556667766655 3 23777899999999987665543322 233333 233232222 2346
Q ss_pred CeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCc
Q 006220 549 MILSLAMSPDGRYMASGD-EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCT 612 (656)
Q Consensus 549 ~i~~l~~sp~g~~L~s~~-~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~ 612 (656)
.+-+|+++++|.++++.+ ..|.+.+||..+++.+....-. .+..++-.+++ +++|.+ .|.
T Consensus 218 Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~--D~cGva~~~~~-f~~ssG-~G~ 278 (305)
T PF07433_consen 218 YIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP--DACGVAPTDDG-FLVSSG-QGQ 278 (305)
T ss_pred ceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC--ceeeeeecCCc-eEEeCC-Ccc
Confidence 799999999998876555 6778999999999988765433 35567766666 555544 444
No 311
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=4.4e-07 Score=92.87 Aligned_cols=209 Identities=14% Similarity=0.173 Sum_probs=153.1
Q ss_pred cCccCEEEEEEccCCCEEEEEeCCCeEEEEeccC--C-ceeEEeeCCCccEEEEEEecCCCEEEEEEC-CCcEEEEECCC
Q 006220 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKL--N-ANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DRTARIWSMDR 494 (656)
Q Consensus 419 ~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~--~-~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~-Dg~i~lwd~~~ 494 (656)
-|...|+.+.-. -.+++.+++.||.++.|.-.. + +-+..+..|...|.+++.+-++..+.|++. |..++++|+.+
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 377777776554 467999999999999997543 1 234556778899999999999999999887 99999999987
Q ss_pred CceeEEecCC--CCCeeEEEEcCCC--CEEEEE-ECCCcEEEEeCCCCeeE--EEEecCCCCeEEEEEcCCCCEEEEEEC
Q 006220 495 IQPLRIMAGH--LSDVDCVRWHINC--NYIATG-SSDKTVRLWDVSSGECV--RIFIGHRSMILSLAMSPDGRYMASGDE 567 (656)
Q Consensus 495 ~~~~~~~~~~--~~~V~~v~~~p~~--~~l~tg-s~dg~V~iwd~~~~~~~--~~~~~h~~~i~~l~~sp~g~~L~s~~~ 567 (656)
...+..+... .+.+.++ .++.. ..|+++ -.+|.+.++|-....+. ..-.-|..+|.++.+++-+..+++...
T Consensus 86 ~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred cchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 6655443321 1222222 12221 134443 36789999998765432 333458999999999999999999999
Q ss_pred CCcEEEEeCCC------CeeeEe---------eeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeeccc
Q 006220 568 DGTIMMWDLAS------GRCVTP---------LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEE 629 (656)
Q Consensus 568 dg~I~iwD~~~------~~~~~~---------~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~ 629 (656)
.|.|.-|.... .+.... +........++.|+|+|..+.+-+.|..|+++++.+++.++...+
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE 241 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDE 241 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhc
Confidence 99999998752 111111 122345678999999999999999999999999999998877765
No 312
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.54 E-value=2.2e-06 Score=92.09 Aligned_cols=201 Identities=17% Similarity=0.190 Sum_probs=127.2
Q ss_pred EEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 346 TFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 346 ~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
++-+|...|.-+.|+.+.+.|-+...+|.|.||-+-.+..-. -..-....+-|.
T Consensus 66 tLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~E--------------------------EMiNnRnKSvV~ 119 (1189)
T KOG2041|consen 66 TLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCE--------------------------EMINNRNKSVVV 119 (1189)
T ss_pred hhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHH--------------------------HHhhCcCccEEE
Confidence 578899999999999999999999999999999987522110 000112346688
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeccCCcee-EEeeC-------------------------------------------
Q 006220 426 SASFSPLGDFILSSSADTTIRLWSTKLNANL-VCYKG------------------------------------------- 461 (656)
Q Consensus 426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~-~~~~~------------------------------------------- 461 (656)
+++|+.+|..++....||.|.+=+++..... ..+++
T Consensus 120 SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~V 199 (1189)
T KOG2041|consen 120 SMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEV 199 (1189)
T ss_pred EEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEE
Confidence 9999999998888888887766554421110 00000
Q ss_pred --------CCccEEEEEEe--------cCCCEEEEEECCCcEEEEECCC-CceeEEecCCCCCeeEEEEcCCCCEEEEEE
Q 006220 462 --------HNYPVWDVQFN--------PQGHYFASSSHDRTARIWSMDR-IQPLRIMAGHLSDVDCVRWHINCNYIATGS 524 (656)
Q Consensus 462 --------h~~~V~~l~~s--------p~~~~l~sgs~Dg~i~lwd~~~-~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs 524 (656)
....|-.+.|. |+...|+++-.+|.+.+..-.+ ..|+..-.+ -.+....|+++|..|++++
T Consensus 200 n~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG 277 (1189)
T KOG2041|consen 200 NGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCG 277 (1189)
T ss_pred eeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEcc
Confidence 00112233332 2445566666666655553322 223322222 4577889999999999887
Q ss_pred CC---------CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220 525 SD---------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (656)
Q Consensus 525 ~d---------g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~ 576 (656)
.+ +.|.+|. .-|..+.+++.....|+.++|-..|-.++.+- |+.|.+=++
T Consensus 278 ~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~Av-dsfiyfanI 336 (1189)
T KOG2041|consen 278 NDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIAV-DSFIYFANI 336 (1189)
T ss_pred CcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEEe-cceEEEEee
Confidence 54 2455555 35778888888888999999987776555543 444444333
No 313
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=1.8e-05 Score=87.38 Aligned_cols=207 Identities=10% Similarity=0.090 Sum_probs=138.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccC-EEEEEEcc
Q 006220 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGP-VYSASFSP 431 (656)
Q Consensus 353 ~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~-V~~l~~sp 431 (656)
.|+| |++.+..+|.|+.+|.|.+.+-. ......+..+... |..+-...
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s-----------------------------~~~~~~fqa~~~siv~~L~~~~ 75 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSS-----------------------------FQLIRGFQAYEQSIVQFLYILN 75 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEeccc-----------------------------ceeeehheecchhhhhHhhccc
Confidence 4554 56888999999999999887743 1222445555555 44443333
Q ss_pred CCCEEEEEeCCC-----eEEEEeccCC------cee--EEeeC-----CCccEEEEEEecCCCEEEEEECCCcEEEEECC
Q 006220 432 LGDFILSSSADT-----TIRLWSTKLN------ANL--VCYKG-----HNYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493 (656)
Q Consensus 432 d~~~L~s~s~Dg-----~I~lwd~~~~------~~~--~~~~~-----h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~ 493 (656)
+..+|++.+.|+ .|++|+++.- .++ ..+.+ ...|+.+++.+.+-..+|+|-.+|.|.++.-+
T Consensus 76 ~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD 155 (933)
T KOG2114|consen 76 KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGD 155 (933)
T ss_pred CceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCc
Confidence 346788877765 4899998632 222 11112 35678999999998999999999999998532
Q ss_pred ----CCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee-EEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 006220 494 ----RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGRYMASGDED 568 (656)
Q Consensus 494 ----~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~-~~~~~~h~~~i~~l~~sp~g~~L~s~~~d 568 (656)
.+...........+|+.+++..++..++.......|.+|.+....+ ......|..++.|-.|++....+++++.
T Consensus 156 i~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~- 234 (933)
T KOG2114|consen 156 ILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS- 234 (933)
T ss_pred chhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-
Confidence 2333333334567899999998887733333445799999874442 4446677789999999986554555543
Q ss_pred CcEEEEeCCCCeeeEeee-CCCcc
Q 006220 569 GTIMMWDLASGRCVTPLM-GHTSC 591 (656)
Q Consensus 569 g~I~iwD~~~~~~~~~~~-~h~~~ 591 (656)
..+.+||....++...+. +|...
T Consensus 235 e~l~fY~sd~~~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 235 EFLYFYDSDGRGPCFAFEVGEKKE 258 (933)
T ss_pred ceEEEEcCCCcceeeeecCCCeEE
Confidence 469999987655555555 66543
No 314
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.50 E-value=1.5e-05 Score=91.22 Aligned_cols=241 Identities=15% Similarity=0.192 Sum_probs=147.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (656)
Q Consensus 350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 429 (656)
..+.|.++.|-.++.-++.++..|.|.+-|..+.. ......-.+.|.+++|
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~-----------------------------~eivg~vd~GI~aasw 117 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLE-----------------------------LEIVGNVDNGISAASW 117 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccc-----------------------------eeeeeeccCceEEEee
Confidence 34579999999999999999999999998765411 1111223478999999
Q ss_pred ccCCCEEEEEeCCCeEEEEeccCCceeEEeeCC-----CccEEEEEEecCCCEEEEEECCCcEEEEECCCC-ceeEEecC
Q 006220 430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGH-----NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRI-QPLRIMAG 503 (656)
Q Consensus 430 spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h-----~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~-~~~~~~~~ 503 (656)
|||.+.++..+..+++.+-.- +...+....-+ .+..-.+-|......|= |+ .|....-+.... +......
T Consensus 118 S~Dee~l~liT~~~tll~mT~-~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfr-gs-~gr~~~~~~~~~ek~~~~~~- 193 (1265)
T KOG1920|consen 118 SPDEELLALITGRQTLLFMTK-DFEPIAEKPLDADDERKSKFVNVGWGRKETQFR-GS-EGRQAARQKIEKEKALEQIE- 193 (1265)
T ss_pred cCCCcEEEEEeCCcEEEEEec-cccchhccccccccccccccceecccccceeee-cc-hhhhcccccccccccccchh-
Confidence 999999999988887766432 23333222111 11222333433222221 11 111111111100 0001111
Q ss_pred CCCCeeEEEEcCCCCEEEEE-----ECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE---ECCCcEEEEe
Q 006220 504 HLSDVDCVRWHINCNYIATG-----SSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG---DEDGTIMMWD 575 (656)
Q Consensus 504 ~~~~V~~v~~~p~~~~l~tg-----s~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~---~~dg~I~iwD 575 (656)
-.+.=+.|.|--+|.++|+. ...+.|++||.. |..-.+-....+--.+++|-|.|.++++- ++|+.|.+|.
T Consensus 194 ~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE 272 (1265)
T KOG1920|consen 194 QDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE 272 (1265)
T ss_pred hccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe
Confidence 12334578999999999983 233799999976 54433333333445689999999999985 3566799998
Q ss_pred CC---CCeeeEeeeCCCccEEEEEEcCCCCEEEE---EECCCcEEEEeCCCCCce
Q 006220 576 LA---SGRCVTPLMGHTSCVWTLAYSCEGSLLAS---GSADCTVKLWDVTTSTKV 624 (656)
Q Consensus 576 ~~---~~~~~~~~~~h~~~V~~l~~s~~~~~l~s---gs~Dg~I~iWd~~~~~~~ 624 (656)
-+ .|.....+......|..++|+.++.+|++ ......|++|-+.+-.--
T Consensus 273 rNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWY 327 (1265)
T KOG1920|consen 273 RNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWY 327 (1265)
T ss_pred cCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEE
Confidence 43 22333333344455999999999999988 444445999998876543
No 315
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.50 E-value=2.4e-06 Score=94.43 Aligned_cols=180 Identities=13% Similarity=0.131 Sum_probs=136.5
Q ss_pred CCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEE
Q 006220 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR 512 (656)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~ 512 (656)
+..++.|+-...+..+|+++.+......-..+.|.-++. +++++.+|...|+|.+-|..+.+.+..+..|.+.|..+.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 455677777777888999887776665544545655554 578999999999999999999999999999999988765
Q ss_pred EcCCCCEEEEEE---------CCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCC-CCEEEEEECCCcEEEEeCC---CC
Q 006220 513 WHINCNYIATGS---------SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPD-GRYMASGDEDGTIMMWDLA---SG 579 (656)
Q Consensus 513 ~~p~~~~l~tgs---------~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~-g~~L~s~~~dg~I~iwD~~---~~ 579 (656)
. .|+.|++++ .|..|.+||+|.-+.+.-+.-+.++ .-+.|.|. ...+++++..|...+-|.. .-
T Consensus 225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP 301 (1118)
T KOG1275|consen 225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP 301 (1118)
T ss_pred c--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCC
Confidence 4 688888876 3567899999987666544444444 45678885 3467788888999999943 22
Q ss_pred e-eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220 580 R-CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617 (656)
Q Consensus 580 ~-~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd 617 (656)
. .+..+......+.++++|++++.++.|..+|.|.+|.
T Consensus 302 ~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 302 PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 1 1222223345599999999999999999999999998
No 316
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.45 E-value=6.4e-07 Score=61.85 Aligned_cols=39 Identities=62% Similarity=1.108 Sum_probs=37.1
Q ss_pred CeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220 537 GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575 (656)
Q Consensus 537 ~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD 575 (656)
|+++.++.+|.+.|++|+|+|++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999999997
No 317
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.45 E-value=5.6e-07 Score=62.14 Aligned_cols=39 Identities=46% Similarity=0.962 Sum_probs=37.0
Q ss_pred CeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617 (656)
Q Consensus 579 ~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd 617 (656)
|+++..+.+|.+.|++++|+|++.+|++|+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 318
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.45 E-value=0.00016 Score=73.04 Aligned_cols=202 Identities=14% Similarity=0.129 Sum_probs=143.8
Q ss_pred EEEEEEcc-CCCEEEEEeCCCe-EEEEeccCCceeEEeeCCCccE--EEEEEecCCCEEEEEE-----CCCcEEEEECC-
Q 006220 424 VYSASFSP-LGDFILSSSADTT-IRLWSTKLNANLVCYKGHNYPV--WDVQFNPQGHYFASSS-----HDRTARIWSMD- 493 (656)
Q Consensus 424 V~~l~~sp-d~~~L~s~s~Dg~-I~lwd~~~~~~~~~~~~h~~~V--~~l~~sp~~~~l~sgs-----~Dg~i~lwd~~- 493 (656)
...++.+| ....++.+-.-|+ ..+||..+++....+......- =.-+||++|++|++.- ..|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 34577888 4455666666665 6789999888876654322211 1357999999999874 45899999998
Q ss_pred CCceeEEecCCCCCeeEEEEcCCCCEEEEE------------------ECCCcEEEEeCCCCeeEEEEe----cCCCCeE
Q 006220 494 RIQPLRIMAGHLSDVDCVRWHINCNYIATG------------------SSDKTVRLWDVSSGECVRIFI----GHRSMIL 551 (656)
Q Consensus 494 ~~~~~~~~~~~~~~V~~v~~~p~~~~l~tg------------------s~dg~V~iwd~~~~~~~~~~~----~h~~~i~ 551 (656)
+.+.+..+..|.-....+.+.|+|..|+++ +.+..+.+.|..+|+.+.... .|.-.|.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR 166 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR 166 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence 667778888777777788999999887775 234567777888998877643 3777899
Q ss_pred EEEEcCCCCEEEEEECCCc-------EEEEeCCCCeeeEeee-------CCCccEEEEEEcCCCCEEEEEE-CCCcEEEE
Q 006220 552 SLAMSPDGRYMASGDEDGT-------IMMWDLASGRCVTPLM-------GHTSCVWTLAYSCEGSLLASGS-ADCTVKLW 616 (656)
Q Consensus 552 ~l~~sp~g~~L~s~~~dg~-------I~iwD~~~~~~~~~~~-------~h~~~V~~l~~s~~~~~l~sgs-~Dg~I~iW 616 (656)
.+++.++|..++..-..|- |-+++. +..+..+. .-.+.|-+|+++.++..+++.+ .-|.+.+|
T Consensus 167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred eEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence 9999999987777654442 444443 33233222 2346788999999998776555 56789999
Q ss_pred eCCCCCceeec
Q 006220 617 DVTTSTKVLKT 627 (656)
Q Consensus 617 d~~~~~~~~~~ 627 (656)
|..++..+...
T Consensus 245 d~~tg~~~~~~ 255 (305)
T PF07433_consen 245 DAATGRLLGSV 255 (305)
T ss_pred ECCCCCEeecc
Confidence 99998876554
No 319
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=1.3e-05 Score=87.94 Aligned_cols=224 Identities=15% Similarity=0.177 Sum_probs=147.1
Q ss_pred eEEEEEcCCCCEEEEEe----CCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220 354 LNCASISQDGSLVAGGF----SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (656)
Q Consensus 354 V~~l~fs~dg~~La~g~----~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 429 (656)
-+-.+|+|...++|+++ ..|+|.||--... ....... .-.+++++|
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfadtGE---------------------------Pqr~Vt~---P~hatSLCW 67 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFADTGE---------------------------PQRDVTY---PVHATSLCW 67 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEecCCC---------------------------CCccccc---ceehhhhcc
Confidence 34457899999988875 3577888753321 0000111 123456999
Q ss_pred ccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeE----------
Q 006220 430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR---------- 499 (656)
Q Consensus 430 spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~---------- 499 (656)
+|..-.|++|-.-|.+.+|...+.+.-.....|..+|..+.||++|..++++..-|.+.+|..+....+.
T Consensus 68 Hpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~ 147 (1416)
T KOG3617|consen 68 HPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELN 147 (1416)
T ss_pred ChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhh
Confidence 9988888899999999999988776666666799999999999999999999999999999876221110
Q ss_pred ------Ee-----------------cCCCCCee-EEEE-------------cCCCCEEEEEECCCcEEEEeCCCCeeEEE
Q 006220 500 ------IM-----------------AGHLSDVD-CVRW-------------HINCNYIATGSSDKTVRLWDVSSGECVRI 542 (656)
Q Consensus 500 ------~~-----------------~~~~~~V~-~v~~-------------~p~~~~l~tgs~dg~V~iwd~~~~~~~~~ 542 (656)
.+ .+..+.+. -.-| .|+|..++.++.+|+|+..|- +|.+..+
T Consensus 148 ~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V 226 (1416)
T KOG3617|consen 148 DQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTV 226 (1416)
T ss_pred ceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcC-CCcEEEE
Confidence 00 01111111 0011 256777888889999988873 2222111
Q ss_pred Ee-------------------------------------------------c-----------------------CCCCe
Q 006220 543 FI-------------------------------------------------G-----------------------HRSMI 550 (656)
Q Consensus 543 ~~-------------------------------------------------~-----------------------h~~~i 550 (656)
.. + ....+
T Consensus 227 ~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~ 306 (1416)
T KOG3617|consen 227 HKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGI 306 (1416)
T ss_pred EEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCce
Confidence 00 0 12358
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeC-CCC------eeeEeeeC---CCccEEEEEEcCCCCEEEEEE
Q 006220 551 LSLAMSPDGRYMASGDEDGTIMMWDL-ASG------RCVTPLMG---HTSCVWTLAYSCEGSLLASGS 608 (656)
Q Consensus 551 ~~l~~sp~g~~L~s~~~dg~I~iwD~-~~~------~~~~~~~~---h~~~V~~l~~s~~~~~l~sgs 608 (656)
+|++++..+..|+.|...|.+.+|-- ..+ .-...+.+ ..+.|+.+.|.|--..++.-+
T Consensus 307 ~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~ 374 (1416)
T KOG3617|consen 307 LCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNT 374 (1416)
T ss_pred EEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhh
Confidence 89999999999999999999999953 221 22233333 347899999998554444433
No 320
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=2e-05 Score=80.07 Aligned_cols=204 Identities=16% Similarity=0.197 Sum_probs=127.2
Q ss_pred eEEeecCccCEEEEEEccCCC-EEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCC-CEEEEEECCCcEEEEE
Q 006220 414 YTLYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-HYFASSSHDRTARIWS 491 (656)
Q Consensus 414 ~~~l~~h~~~V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~sgs~Dg~i~lwd 491 (656)
...+.+|...|.+++|||..+ ++..++.+..|+|.|+.+..++..+..+ .++|+++|.-+. +++..|-..|.|.+||
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEE
Confidence 346778889999999999888 7889999999999999999988888877 789999999854 5677777999999999
Q ss_pred CCCCc-------------eeEEec---------------------------------------CCCCCeeEEEEcCCCCE
Q 006220 492 MDRIQ-------------PLRIMA---------------------------------------GHLSDVDCVRWHINCNY 519 (656)
Q Consensus 492 ~~~~~-------------~~~~~~---------------------------------------~~~~~V~~v~~~p~~~~ 519 (656)
++... ++..+. +..+...++++++..+.
T Consensus 265 ~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh 344 (463)
T KOG1645|consen 265 MRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNH 344 (463)
T ss_pred ccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccCCCcceeeeeecCccce
Confidence 98543 111100 00122233344443344
Q ss_pred EEEEECCC-------cEE-EEeCCCCeeEEEE-ecC-CCCe------EEEEEcCCCCEEE-EEECCCcEEEEeCCCCeee
Q 006220 520 IATGSSDK-------TVR-LWDVSSGECVRIF-IGH-RSMI------LSLAMSPDGRYMA-SGDEDGTIMMWDLASGRCV 582 (656)
Q Consensus 520 l~tgs~dg-------~V~-iwd~~~~~~~~~~-~~h-~~~i------~~l~~sp~g~~L~-s~~~dg~I~iwD~~~~~~~ 582 (656)
++...... .|- --|-.+|..+-.. .++ .++- ..+.-.++.++|+ .|+..+.+.+||..++..+
T Consensus 345 ~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evv 424 (463)
T KOG1645|consen 345 LLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVV 424 (463)
T ss_pred EEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhhee
Confidence 43332210 000 0122233332111 112 1110 1122234455555 4566788999999999999
Q ss_pred EeeeCCCccEEEEEEcC-CC-CEEEEEECCCcEEEEeCCC
Q 006220 583 TPLMGHTSCVWTLAYSC-EG-SLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 583 ~~~~~h~~~V~~l~~s~-~~-~~l~sgs~Dg~I~iWd~~~ 620 (656)
.++.-. .+|..++... ++ .+|+.- .|..++|+...+
T Consensus 425 Q~l~~~-epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~es 462 (463)
T KOG1645|consen 425 QTLALS-EPVLDICPNDTNGSSYLALL-TDDRVHIYKNES 462 (463)
T ss_pred eecccC-cceeecceeecCCcchhhhe-ecceEEEEecCC
Confidence 888543 7788777543 33 455554 466888887654
No 321
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.37 E-value=7e-05 Score=74.54 Aligned_cols=180 Identities=16% Similarity=0.134 Sum_probs=120.5
Q ss_pred CCeEEEEeccCCceeEEeeCCCccEEEEE--EecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCE
Q 006220 442 DTTIRLWSTKLNANLVCYKGHNYPVWDVQ--FNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNY 519 (656)
Q Consensus 442 Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~--~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~ 519 (656)
+|+|..||..+++.+....... .+.... ..+++.++++++.++.++.||..+++.+..+.. ...+.... ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccc
Confidence 6899999999999887775311 111122 333566788889999999999999998877764 22222211 234567
Q ss_pred EEEEECCCcEEEEeCCCCeeEEEE-ecCC---CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCcc----
Q 006220 520 IATGSSDKTVRLWDVSSGECVRIF-IGHR---SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSC---- 591 (656)
Q Consensus 520 l~tgs~dg~V~iwd~~~~~~~~~~-~~h~---~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~---- 591 (656)
+++++.++.|+.+|..+|+.+... .... .....+.....+..++++..++.|..+|..+|+.+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 777778899999999999998874 3321 11222333334888899988999999999999998887654322
Q ss_pred ------EEEEEEcCCCCEEEEEECCCcEEEEeCCCCCcee
Q 006220 592 ------VWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVL 625 (656)
Q Consensus 592 ------V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~ 625 (656)
+.+-....++ .+..++.+|.+.-+|+.+++...
T Consensus 159 ~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w 197 (238)
T PF13360_consen 159 ISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW 197 (238)
T ss_dssp EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE
T ss_pred eeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE
Confidence 1122222244 77777777754444999998655
No 322
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.29 E-value=0.00021 Score=76.28 Aligned_cols=257 Identities=12% Similarity=0.105 Sum_probs=140.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccc---ccccCC-------CCCCCCCCccccC---CC--CCceeeEEe
Q 006220 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQA---VSSGLQ-------GENDTTPREDIIG---PN--GRKRSYTLY 417 (656)
Q Consensus 353 ~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~---~~~~~~-------~~~~~~~~~~~~~---~~--~~~~~~~~l 417 (656)
.|+++.|+++..-||+|...|.|.||.+....... ...... ..+......++.. ++ ........+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58999999999999999999999999987532221 000000 0000000001111 11 113344556
Q ss_pred ecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEe--eC------CCccEEEEEEec-----CC---CEEEEE
Q 006220 418 QGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY--KG------HNYPVWDVQFNP-----QG---HYFASS 481 (656)
Q Consensus 418 ~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~--~~------h~~~V~~l~~sp-----~~---~~l~sg 481 (656)
....++|++++.| +=-+++.|..+|++.|.|++....+..- .. ....|.++.|+. |+ -.+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 6678999999998 4569999999999999999866555431 11 234577888874 33 468889
Q ss_pred ECCCcEEEEECCC---Cc----eeEEecCCCCCeeEEE-EcCC-C-------------------CEEEEEECCCcEEEEe
Q 006220 482 SHDRTARIWSMDR---IQ----PLRIMAGHLSDVDCVR-WHIN-C-------------------NYIATGSSDKTVRLWD 533 (656)
Q Consensus 482 s~Dg~i~lwd~~~---~~----~~~~~~~~~~~V~~v~-~~p~-~-------------------~~l~tgs~dg~V~iwd 533 (656)
...|.+.+|.+.- +. .......+.+.|..+. ++.+ | +-++....+..+|++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 9999999998741 11 1112223445555443 3211 1 2244445577899999
Q ss_pred CCCCeeEEEEecCCCCeEEEEEc-----CCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCC----ccEEEEEEcCCCCEE
Q 006220 534 VSSGECVRIFIGHRSMILSLAMS-----PDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT----SCVWTLAYSCEGSLL 604 (656)
Q Consensus 534 ~~~~~~~~~~~~h~~~i~~l~~s-----p~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~----~~V~~l~~s~~~~~l 604 (656)
.-+.+.........-.+..+.+- ..+..|++-..+|.|+++.+..-+.+..+.-+. ..+...+++++|..+
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~ 321 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIF 321 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EE
T ss_pred CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEE
Confidence 98887766554332233344452 356788888999999999999998888776532 334566788999977
Q ss_pred EEEECC
Q 006220 605 ASGSAD 610 (656)
Q Consensus 605 ~sgs~D 610 (656)
+-.+..
T Consensus 322 ~~~gps 327 (395)
T PF08596_consen 322 YWTGPS 327 (395)
T ss_dssp EE-SSS
T ss_pred EEeCcc
Confidence 766543
No 323
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=6e-05 Score=83.45 Aligned_cols=193 Identities=15% Similarity=0.190 Sum_probs=130.0
Q ss_pred EEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCcc-EEEEEEecCCCEEEEEECCC-----cEEEEECCCC------
Q 006220 428 SFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYP-VWDVQFNPQGHYFASSSHDR-----TARIWSMDRI------ 495 (656)
Q Consensus 428 ~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~-V~~l~~sp~~~~l~sgs~Dg-----~i~lwd~~~~------ 495 (656)
+|++.+..++.|+.+|.|.+.+-. .+.+..++.+... |..+......+++++.+.|+ .+++|+++..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 467778899999999988887643 3344666766666 43333333346777777664 4899998642
Q ss_pred cee---EEec----CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC----CCeeEEEEecCCCCeEEEEEcCCCCEEEE
Q 006220 496 QPL---RIMA----GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS----SGECVRIFIGHRSMILSLAMSPDGRYMAS 564 (656)
Q Consensus 496 ~~~---~~~~----~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~----~~~~~~~~~~h~~~i~~l~~sp~g~~L~s 564 (656)
.++ +.+. ....++.+++.|.+-+.+|+|-.+|.|..+.-. .|........-..+|+.+++..++..++-
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 233 2222 135678899999999999999999999988421 12222222234569999999999887333
Q ss_pred EECCCcEEEEeCCCCee--eEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCc
Q 006220 565 GDEDGTIMMWDLASGRC--VTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (656)
Q Consensus 565 ~~~dg~I~iwD~~~~~~--~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~ 623 (656)
+.....|.+|.+. |+. ...+..|..++.|-++++....+++++ +..|.+|+......
T Consensus 189 v~Tt~~V~~y~l~-gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~ 247 (933)
T KOG2114|consen 189 VATTEQVMLYSLS-GRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGP 247 (933)
T ss_pred EEecceeEEEEec-CCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcce
Confidence 3334579999987 444 444667778889999987665455554 44788998875443
No 324
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.27 E-value=0.00041 Score=74.60 Aligned_cols=111 Identities=21% Similarity=0.304 Sum_probs=80.3
Q ss_pred EEEEEec-CCCEEEEEE----CCCcE----EEEECCCCce--eEEec-CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220 467 WDVQFNP-QGHYFASSS----HDRTA----RIWSMDRIQP--LRIMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDV 534 (656)
Q Consensus 467 ~~l~~sp-~~~~l~sgs----~Dg~i----~lwd~~~~~~--~~~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~ 534 (656)
.++.||- +++.+.+.. .+|.+ .+|++...+. +.... ...+.|.|++++|+...++.|+.||+|.+||.
T Consensus 209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~ 288 (545)
T PF11768_consen 209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDT 288 (545)
T ss_pred EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEc
Confidence 4677776 444555442 34432 3455544332 22111 56788999999999999999999999999998
Q ss_pred CCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 535 SSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASG 579 (656)
Q Consensus 535 ~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~ 579 (656)
..+.... ....-..+.++|+|+|.++++|+..|.+.+||+.-.
T Consensus 289 ~~~~t~~--~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 289 TRGVTLL--AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred CCCeeee--eeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 7774433 234456788999999999999999999999998643
No 325
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.26 E-value=5.1e-05 Score=81.33 Aligned_cols=114 Identities=23% Similarity=0.305 Sum_probs=80.6
Q ss_pred CeeEEEEcC-CCCEEEEE----ECCCc----EEEEeCCCCeeEEE---EecCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 006220 507 DVDCVRWHI-NCNYIATG----SSDKT----VRLWDVSSGECVRI---FIGHRSMILSLAMSPDGRYMASGDEDGTIMMW 574 (656)
Q Consensus 507 ~V~~v~~~p-~~~~l~tg----s~dg~----V~iwd~~~~~~~~~---~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iw 574 (656)
...++.|+- +++.+.|. +.+|. -.+|++..++..+. -....+.+.|++++|+...|+.|+.||+|.+|
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILY 286 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence 345666664 33444442 23343 33566655433221 12467789999999999999999999999999
Q ss_pred eCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220 575 DLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 575 D~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
|...+... +....-.++.++|+|+|.++++|+..|.+.+||+.-+.
T Consensus 287 D~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 287 DTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 98766332 33344557889999999999999999999999987543
No 326
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.24 E-value=5.4e-07 Score=96.02 Aligned_cols=239 Identities=14% Similarity=0.209 Sum_probs=147.9
Q ss_pred CCeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220 352 NGLNCASISQD--GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (656)
Q Consensus 352 ~~V~~l~fs~d--g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 429 (656)
..+.|++++-+ ..++++|..+|.|.+-.+.... ........+|..++++++|
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~h--------------------------dSs~E~tp~~ar~Ct~lAw 110 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPH--------------------------DSSAEVTPGYARPCTSLAW 110 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcc--------------------------cccceeccccccccccccc
Confidence 35777777654 4578999999999998876411 0122345578889999999
Q ss_pred ccCC-CEEEEEe----CCCeEEEEeccCCc--ee--EEeeC-CCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 006220 430 SPLG-DFILSSS----ADTTIRLWSTKLNA--NL--VCYKG-HNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR 499 (656)
Q Consensus 430 spd~-~~L~s~s----~Dg~I~lwd~~~~~--~~--~~~~~-h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~ 499 (656)
++-. ++|+.|- .|..+.|||+.++- +. ..+.+ ......+++|-.+...+.+|...+.++++|++... .+
T Consensus 111 neLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~ 189 (783)
T KOG1008|consen 111 NELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DS 189 (783)
T ss_pred ccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh-hh
Confidence 9854 4566553 25679999998761 11 11222 33345588999888999999999999999998421 11
Q ss_pred EecCCCCCeeEEEEcC-CCCEEEEEECCCcEEEEe-CCCCe-eEEEEecCC----CCeEEEEEcCCCC-EEEE-EECCCc
Q 006220 500 IMAGHLSDVDCVRWHI-NCNYIATGSSDKTVRLWD-VSSGE-CVRIFIGHR----SMILSLAMSPDGR-YMAS-GDEDGT 570 (656)
Q Consensus 500 ~~~~~~~~V~~v~~~p-~~~~l~tgs~dg~V~iwd-~~~~~-~~~~~~~h~----~~i~~l~~sp~g~-~L~s-~~~dg~ 570 (656)
...-.+..+..+...| .++|+++-. ||.|.+|| .++-+ ++..+.... ..+..++|+|... .+++ .-..++
T Consensus 190 ~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~t 268 (783)
T KOG1008|consen 190 VSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSIT 268 (783)
T ss_pred hhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcce
Confidence 2222334566677788 777887665 99999999 44332 222222122 2488999999532 3444 446688
Q ss_pred EEEEeCCCC--------eeeEeee-----CCC---ccEEEEEEcCCC--CEEEEEECCCcEEEEeC
Q 006220 571 IMMWDLASG--------RCVTPLM-----GHT---SCVWTLAYSCEG--SLLASGSADCTVKLWDV 618 (656)
Q Consensus 571 I~iwD~~~~--------~~~~~~~-----~h~---~~V~~l~~s~~~--~~l~sgs~Dg~I~iWd~ 618 (656)
|+++|+..- ....... .|. ..|.++.|++.. ...+.+-..-++.-+++
T Consensus 269 Irlydi~~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V 334 (783)
T KOG1008|consen 269 IRLYDICVVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSV 334 (783)
T ss_pred EEEecccccCCcccccccceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhccc
Confidence 999998531 1111111 122 467778887744 23444444444444444
No 327
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.20 E-value=0.00026 Score=76.52 Aligned_cols=189 Identities=10% Similarity=-0.032 Sum_probs=120.0
Q ss_pred CCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEE-EEEec--CCCEEEEEECCCcEEEEECCCCceeEEecCCCC---
Q 006220 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWD-VQFNP--QGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS--- 506 (656)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~-l~~sp--~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~--- 506 (656)
+..++.++.+|.|..+|..+++.+..+......+.. ..-+| .+..++.++.+|.+..+|..+++.+........
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~ 239 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGA 239 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCc
Confidence 346677788899999999999988776532111000 00111 233567778899999999988876654331100
Q ss_pred ----CeeEEEEcC--CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe
Q 006220 507 ----DVDCVRWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR 580 (656)
Q Consensus 507 ----~V~~v~~~p--~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~ 580 (656)
....+..+| .+..+++++.+|.+..+|..+|+.+..... +....+.. .+..|+.++.+|.+..+|..+|+
T Consensus 240 ~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~ 315 (394)
T PRK11138 240 TEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGV 315 (394)
T ss_pred cchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCc
Confidence 001111122 355777888899999999999987765431 11112222 46678888899999999999998
Q ss_pred eeEeeeCCC-ccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220 581 CVTPLMGHT-SCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 581 ~~~~~~~h~-~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
.+-....-. ....+... .+..|+.++.||.|.+.|..+++.....
T Consensus 316 ~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 316 ELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQ 361 (394)
T ss_pred EEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 765432211 11112222 2567888999999999999998876654
No 328
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.16 E-value=6.2e-05 Score=82.74 Aligned_cols=106 Identities=11% Similarity=0.230 Sum_probs=86.3
Q ss_pred EEEEccCCCEEEEEeC----CCeEEEEeccCCceeE--EeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 006220 426 SASFSPLGDFILSSSA----DTTIRLWSTKLNANLV--CYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR 499 (656)
Q Consensus 426 ~l~~spd~~~L~s~s~----Dg~I~lwd~~~~~~~~--~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~ 499 (656)
-.+|+|...++++++. .|+|.||- ++|++.. .+.- .+.+++|+|..-.++.|-.-|.+.+|...+.+.-.
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~---hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht 95 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPV---HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT 95 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccce---ehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence 3579998888887764 57888884 4455432 2222 24579999998889999899999999999887777
Q ss_pred EecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVS 535 (656)
Q Consensus 500 ~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~ 535 (656)
....|..+|..+.|+|+|+.++++..-|.|.+|...
T Consensus 96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 777899999999999999999999999999999765
No 329
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.15 E-value=0.00032 Score=77.12 Aligned_cols=186 Identities=12% Similarity=0.120 Sum_probs=116.4
Q ss_pred CCCEEEEEeC-CCeEEEEeccCCceeEEeeC-CCccEEEEEEe--cCCCEEEEEE------------------CCCcEEE
Q 006220 432 LGDFILSSSA-DTTIRLWSTKLNANLVCYKG-HNYPVWDVQFN--PQGHYFASSS------------------HDRTARI 489 (656)
Q Consensus 432 d~~~L~s~s~-Dg~I~lwd~~~~~~~~~~~~-h~~~V~~l~~s--p~~~~l~sgs------------------~Dg~i~l 489 (656)
||++|+.-.. +..|-..+++..++-..+.. ....+.+++|- |+..|+++++ ..+.+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 6788887764 55666667666655433321 12223333332 3333333332 2355667
Q ss_pred EECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEE----------------------------------------CCCcE
Q 006220 490 WSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS----------------------------------------SDKTV 529 (656)
Q Consensus 490 wd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs----------------------------------------~dg~V 529 (656)
.|.++.+....+... +....++++|+|.++++.+ .++.|
T Consensus 220 ID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V 298 (635)
T PRK02888 220 VDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKV 298 (635)
T ss_pred EECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEE
Confidence 777766555544422 2345667788888877664 12457
Q ss_pred EEEeCCC----C-eeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCee------------eEeeeCCCcc
Q 006220 530 RLWDVSS----G-ECVRIFIGHRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGRC------------VTPLMGHTSC 591 (656)
Q Consensus 530 ~iwd~~~----~-~~~~~~~~h~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~~~~~~------------~~~~~~h~~~ 591 (656)
.+.|.++ + ..+..+. -......+.+||||+++++++ .+++|.|.|+.+.+. +.+..--.+
T Consensus 299 ~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG- 376 (635)
T PRK02888 299 PVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG- 376 (635)
T ss_pred EEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC-
Confidence 7777776 3 3333333 334567899999999887755 589999999987553 333333223
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 592 VWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 592 V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
....+|+++|....|-..|..|..|++..
T Consensus 377 PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 377 PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 35678999999999999999999999976
No 330
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.15 E-value=0.00054 Score=78.84 Aligned_cols=218 Identities=17% Similarity=0.227 Sum_probs=123.8
Q ss_pred EeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC--CCcccccccCCCCCCCCCCccccCCCCCceeeEEeec-----
Q 006220 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAK--LGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG----- 419 (656)
Q Consensus 347 ~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----- 419 (656)
..+..++|.+++||||+..++..+..+++.+-.-.- ........ ......... .-+.++..+.+.|
T Consensus 105 vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~---d~~~~sk~v----~VGwGrkeTqfrgs~gr~ 177 (1265)
T KOG1920|consen 105 VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDA---DDERKSKFV----NVGWGRKETQFRGSEGRQ 177 (1265)
T ss_pred eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccccc---ccccccccc----eecccccceeeecchhhh
Confidence 345678999999999999999998888876654321 11111000 000000000 0011111111111
Q ss_pred ----------------CccCEEEEEEccCCCEEEEE-----eCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEE
Q 006220 420 ----------------HSGPVYSASFSPLGDFILSS-----SADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYF 478 (656)
Q Consensus 420 ----------------h~~~V~~l~~spd~~~L~s~-----s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l 478 (656)
-.+.=++|+|--||+++++. .....|++||.+ +..-..-....+--.+++|-|.|..+
T Consensus 178 ~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~i 256 (1265)
T KOG1920|consen 178 AARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLI 256 (1265)
T ss_pred cccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeE
Confidence 11122468999999998873 233789999987 43322222233334579999999998
Q ss_pred EEEE---CCCcEEEEECCC---CceeEEecCCCCCeeEEEEcCCCCEEEE---EECCCcEEEEeCCCCee----EEEEec
Q 006220 479 ASSS---HDRTARIWSMDR---IQPLRIMAGHLSDVDCVRWHINCNYIAT---GSSDKTVRLWDVSSGEC----VRIFIG 545 (656)
Q Consensus 479 ~sgs---~Dg~i~lwd~~~---~~~~~~~~~~~~~V~~v~~~p~~~~l~t---gs~dg~V~iwd~~~~~~----~~~~~~ 545 (656)
++-. .|+.|.++.-+. +.-...+......|..++|+.++..|++ ......|++|-+.+..- ...+..
T Consensus 257 A~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~ 336 (1265)
T KOG1920|consen 257 AAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQ 336 (1265)
T ss_pred eeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEeccc
Confidence 8864 566788886432 2222223333344899999999999988 44445599998876532 222221
Q ss_pred CCCCeEEEEEcCCC-CEEEEEECCCcEEEEeC
Q 006220 546 HRSMILSLAMSPDG-RYMASGDEDGTIMMWDL 576 (656)
Q Consensus 546 h~~~i~~l~~sp~g-~~L~s~~~dg~I~iwD~ 576 (656)
... +.|+|.. ..|..-..+|...++|+
T Consensus 337 --~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 337 --KAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred --ccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 111 6777732 23333335666666665
No 331
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.13 E-value=0.00085 Score=73.91 Aligned_cols=180 Identities=14% Similarity=0.031 Sum_probs=109.4
Q ss_pred EEEccCCCEEEE-EeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEE-----------------------
Q 006220 427 ASFSPLGDFILS-SSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS----------------------- 482 (656)
Q Consensus 427 l~~spd~~~L~s-~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs----------------------- 482 (656)
+=++|||+.+.. .-..+.+.+.|..+.+....+.--. ....+.++++|.++++.+
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf 276 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF 276 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence 335566665432 2234566667766655544433222 223455666666655553
Q ss_pred -----------------CCCcEEEEECCC-----CceeEEecCCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCee
Q 006220 483 -----------------HDRTARIWSMDR-----IQPLRIMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGEC 539 (656)
Q Consensus 483 -----------------~Dg~i~lwd~~~-----~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~~~ 539 (656)
.+++|.+.|..+ ...+..+. -......+.++|+|+++++++ .+.+|.+.|+.+.+.
T Consensus 277 ni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~ 355 (635)
T PRK02888 277 NIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD 355 (635)
T ss_pred chHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence 234577777776 33444443 335567899999999987765 488999999987542
Q ss_pred ------------EEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC----------CeeeEeeeCCCccE-----
Q 006220 540 ------------VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS----------GRCVTPLMGHTSCV----- 592 (656)
Q Consensus 540 ------------~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~----------~~~~~~~~~h~~~V----- 592 (656)
+....--.+| ...+|.++|....|..-|..|..|++.. ...+.++.-|-.+.
T Consensus 356 ~~~~~~~~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~ 434 (635)
T PRK02888 356 LFDGKIKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHAS 434 (635)
T ss_pred hhhccCCccceEEEeeccCCCc-ceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeec
Confidence 3333322233 4578999999888899999999999876 23444443333221
Q ss_pred EEEEEcCCCCEEEEEEC
Q 006220 593 WTLAYSCEGSLLASGSA 609 (656)
Q Consensus 593 ~~l~~s~~~~~l~sgs~ 609 (656)
.+=.-.++|++|++...
T Consensus 435 ~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 435 MGETKEADGKWLVSLNK 451 (635)
T ss_pred CCCcCCCCCCEEEEccc
Confidence 11223678888887653
No 332
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.12 E-value=0.00053 Score=74.09 Aligned_cols=189 Identities=10% Similarity=0.007 Sum_probs=121.1
Q ss_pred CCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeE-E
Q 006220 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDC-V 511 (656)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~-v 511 (656)
+..++.++.+|.+..+|..+++.+............... .+..+++++.++.++.+|..+++.+..+......+.. .
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 197 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG 197 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence 566777888999999999999988776543321111112 2456777888999999999999888766532111100 0
Q ss_pred EEcC--CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCC-------CeEEEEEcC--CCCEEEEEECCCcEEEEeCCCCe
Q 006220 512 RWHI--NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS-------MILSLAMSP--DGRYMASGDEDGTIMMWDLASGR 580 (656)
Q Consensus 512 ~~~p--~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~-------~i~~l~~sp--~g~~L~s~~~dg~I~iwD~~~~~ 580 (656)
.-+| .+..++.++.+|.+..+|..+|+.+........ ....+..+| .+..++.++.+|.+..+|..+|+
T Consensus 198 ~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~ 277 (394)
T PRK11138 198 ESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ 277 (394)
T ss_pred CCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC
Confidence 0011 234577788899999999999987665431110 011111223 25567777889999999999998
Q ss_pred eeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220 581 CVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 581 ~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
.+-+... +....+. ..+..++.++.+|.+..+|..+++.....
T Consensus 278 ~~W~~~~--~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 278 IVWKREY--GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQ 320 (394)
T ss_pred EEEeecC--CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcc
Confidence 7655431 1111222 24567777888999999999888766543
No 333
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.10 E-value=0.0012 Score=71.50 Aligned_cols=173 Identities=13% Similarity=0.130 Sum_probs=94.7
Q ss_pred cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCce-------eEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEE-CC
Q 006220 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN-------LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS-MD 493 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~-------~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd-~~ 493 (656)
+.|.++.|+.+ ..|+....||+++++|+. |.. +.........+....+..+|-.+++ .++.+.+.. ..
T Consensus 81 ~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~ 156 (410)
T PF04841_consen 81 GRIVGMGWTDD-EELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNID 156 (410)
T ss_pred CCEEEEEECCC-CeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCcc
Confidence 89999999874 556677789999999986 333 1111111222333344445533333 344444443 22
Q ss_pred CCceeEEecCCCCCee---------E-EEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEE
Q 006220 494 RIQPLRIMAGHLSDVD---------C-VRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMA 563 (656)
Q Consensus 494 ~~~~~~~~~~~~~~V~---------~-v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~ 563 (656)
.....+.+..-..... . ..++.+....+....++.+.+.+-...+. ....+++..|++||+|++||
T Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~----i~~~~~i~~iavSpng~~iA 232 (410)
T PF04841_consen 157 EPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ----IDSDGPIIKIAVSPNGKFIA 232 (410)
T ss_pred ccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc----ccCCCCeEEEEECCCCCEEE
Confidence 1111111110000000 0 12333444444444455555433222111 11246899999999999999
Q ss_pred EEECCCcEEEEeCCCCeeeEeeeCC-CccEEEEEEcCCCC
Q 006220 564 SGDEDGTIMMWDLASGRCVTPLMGH-TSCVWTLAYSCEGS 602 (656)
Q Consensus 564 s~~~dg~I~iwD~~~~~~~~~~~~h-~~~V~~l~~s~~~~ 602 (656)
.-..+|.+.+.+..-.+.+..+... ......+.|+-+..
T Consensus 233 l~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 233 LFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred EEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 9999999999987666666665543 34556777776543
No 334
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.03 E-value=1.5e-06 Score=92.64 Aligned_cols=196 Identities=20% Similarity=0.372 Sum_probs=133.1
Q ss_pred cCEEEEEEccCCC--EEEEEeCCCeEEEEeccCCce--eEEeeCCCccEEEEEEec-CCCEEEEEE----CCCcEEEEEC
Q 006220 422 GPVYSASFSPLGD--FILSSSADTTIRLWSTKLNAN--LVCYKGHNYPVWDVQFNP-QGHYFASSS----HDRTARIWSM 492 (656)
Q Consensus 422 ~~V~~l~~spd~~--~L~s~s~Dg~I~lwd~~~~~~--~~~~~~h~~~V~~l~~sp-~~~~l~sgs----~Dg~i~lwd~ 492 (656)
..+.|++++-+.+ .++.|..+|.|.+-..+...- -....++..++++++|++ |.+.+|.|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 4466777765544 678899999999988764322 344567888999999999 455566653 4568999999
Q ss_pred CCC--ceeE--Eec-CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCe-eEEEEecCCCCeEEEEEcC-CCCEEEEE
Q 006220 493 DRI--QPLR--IMA-GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGE-CVRIFIGHRSMILSLAMSP-DGRYMASG 565 (656)
Q Consensus 493 ~~~--~~~~--~~~-~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~-~~~~~~~h~~~i~~l~~sp-~g~~L~s~ 565 (656)
.+. .|.. .+. +......+++|-.+.+.+.+|...+.+.++|++... ....+ .+..+..+..+| .+.|+++.
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceecc
Confidence 876 2221 222 244567789999889999999999999999998432 22222 223456677888 67788776
Q ss_pred ECCCcEEEEeC-CCC-eeeEeeeCCC----ccEEEEEEcCCC-CEEEEEE-CCCcEEEEeCCC
Q 006220 566 DEDGTIMMWDL-ASG-RCVTPLMGHT----SCVWTLAYSCEG-SLLASGS-ADCTVKLWDVTT 620 (656)
Q Consensus 566 ~~dg~I~iwD~-~~~-~~~~~~~~h~----~~V~~l~~s~~~-~~l~sgs-~Dg~I~iWd~~~ 620 (656)
. ||.|.+||. +.- .++..+.... ..+..++|+|.. ..+++.. ..++|+.+|+..
T Consensus 215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 6 999999993 322 2333332222 248999999953 3455555 457899999864
No 335
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.03 E-value=0.0088 Score=65.05 Aligned_cols=241 Identities=17% Similarity=0.154 Sum_probs=133.1
Q ss_pred eEEEEEcCCCCEEEEEe-CCC----cEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeE-EeecCccCEEEE
Q 006220 354 LNCASISQDGSLVAGGF-SDS----SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYT-LYQGHSGPVYSA 427 (656)
Q Consensus 354 V~~l~fs~dg~~La~g~-~dg----~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~h~~~V~~l 427 (656)
+...++||||++||.+- ..| .|+|+|+.++. ... .+.. .. ..++
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~----------------------------~l~d~i~~-~~-~~~~ 175 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGK----------------------------FLPDGIEN-PK-FSSV 175 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTE----------------------------EEEEEEEE-EE-SEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCc----------------------------CcCCcccc-cc-cceE
Confidence 44678999999999773 334 49999987521 111 1111 11 1239
Q ss_pred EEccCCCEEEEEeCCC-----------eEEEEeccCCcee--EEeeCCCcc--EEEEEEecCCCEEEEEECC----CcEE
Q 006220 428 SFSPLGDFILSSSADT-----------TIRLWSTKLNANL--VCYKGHNYP--VWDVQFNPQGHYFASSSHD----RTAR 488 (656)
Q Consensus 428 ~~spd~~~L~s~s~Dg-----------~I~lwd~~~~~~~--~~~~~h~~~--V~~l~~sp~~~~l~sgs~D----g~i~ 488 (656)
.|.++++.|+....+. .|+.|.+.+...- ..+.....+ ...+..++++++++..+.. ..++
T Consensus 176 ~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~ 255 (414)
T PF02897_consen 176 SWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVY 255 (414)
T ss_dssp EECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEE
T ss_pred EEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEE
Confidence 9999988776554332 3778887766442 555554433 5678899999997765422 3477
Q ss_pred EEECCCC----ceeEEecCCCCCeeEEEEcCCCCEEEEEE---CCCcEEEEeCCCCee---EEEEecCCCCeEEEEEcCC
Q 006220 489 IWSMDRI----QPLRIMAGHLSDVDCVRWHINCNYIATGS---SDKTVRLWDVSSGEC---VRIFIGHRSMILSLAMSPD 558 (656)
Q Consensus 489 lwd~~~~----~~~~~~~~~~~~V~~v~~~p~~~~l~tgs---~dg~V~iwd~~~~~~---~~~~~~h~~~i~~l~~sp~ 558 (656)
+.++... .....+......+....-+.++.+++... ..+.|...++.+... ...+..+...+.-..+...
T Consensus 256 ~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~ 335 (414)
T PF02897_consen 256 LLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF 335 (414)
T ss_dssp EEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE
T ss_pred EEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE
Confidence 7788764 23444443444444433333444444332 346777778877652 3355556554333334444
Q ss_pred CCEEEEE-ECCC--cEEEEeCCCCeeeEeeeC-CCccEEEEEEcCCCCEE-EEEEC---CCcEEEEeCCCCCce
Q 006220 559 GRYMASG-DEDG--TIMMWDLASGRCVTPLMG-HTSCVWTLAYSCEGSLL-ASGSA---DCTVKLWDVTTSTKV 624 (656)
Q Consensus 559 g~~L~s~-~~dg--~I~iwD~~~~~~~~~~~~-h~~~V~~l~~s~~~~~l-~sgs~---Dg~I~iWd~~~~~~~ 624 (656)
+.+|+.. ..++ .|+++|+..+.....+.. -.+.|..+...+++..+ ++.++ -+++..||+.+++..
T Consensus 336 ~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 336 KDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp TTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred CCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 5555544 3443 588999984555544443 33556676666655533 33332 367888999887654
No 336
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.01 E-value=0.0011 Score=71.70 Aligned_cols=226 Identities=15% Similarity=0.127 Sum_probs=123.0
Q ss_pred EeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE
Q 006220 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS 426 (656)
Q Consensus 347 ~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 426 (656)
+....-....+.++|+|++++++ .+|.-.|+.... .+.. ..+.-..
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~----------------------------~r~k-----~~G~g~~ 73 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALA----------------------------WRNK-----AFGSGLS 73 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTT----------------------------TEEE-----EEEE-SE
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccC----------------------------Cccc-----ccCceeE
Confidence 33444457899999999999995 677777777321 0110 1244556
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCC
Q 006220 427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS 506 (656)
Q Consensus 427 l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~ 506 (656)
..|.+.++ +++-...++|.++.--.......++.. ..+..+-. |..|...+.+ .|.+||+.+++.++.+...
T Consensus 74 ~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~-- 145 (443)
T PF04053_consen 74 FVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS-- 145 (443)
T ss_dssp EEE-TSSE-EEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---
T ss_pred EEEecCcc-EEEEECCCeEEEEEcCccccceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--
Confidence 88998554 666666888999643223332333321 22333332 7777777654 8999999999999998743
Q ss_pred CeeEEEEcCCCCEEEEEECCCcEEEEeCCCC-----------eeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220 507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSG-----------ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575 (656)
Q Consensus 507 ~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~-----------~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD 575 (656)
+|..|.|++++++++..+.+ .+.+++.... .....+..-...|.+.+|..+ .++-.+.. +|+-
T Consensus 146 ~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY-- 219 (443)
T PF04053_consen 146 AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY-- 219 (443)
T ss_dssp E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--
T ss_pred CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--
Confidence 48999999999999998755 7777775433 023333332567888899865 33333333 6665
Q ss_pred CCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 576 LASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (656)
Q Consensus 576 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~ 621 (656)
+-.|... .+..-..+++=+...+..+.+.....|+.|..+.+...
T Consensus 220 l~~Ge~~-~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 220 LVNGETG-IIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp EETTEEE-EEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred EEcCCcc-eEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 3344322 22222456777778887788999999999999887653
No 337
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.98 E-value=0.0027 Score=61.53 Aligned_cols=98 Identities=14% Similarity=-0.006 Sum_probs=61.0
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE-EEEEccCCCEEEEEe
Q 006220 362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY-SASFSPLGDFILSSS 440 (656)
Q Consensus 362 dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~-~l~~spd~~~L~s~s 440 (656)
-|++++.|+..|.+++.+..++.+ +..+..- +.|. .....+++..+..|+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~----------------------------~w~f~~~-~~vk~~a~~d~~~glIycgs 112 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQ----------------------------IWNFVIL-ETVKVRAQCDFDGGLIYCGS 112 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhh----------------------------eeeeeeh-hhhccceEEcCCCceEEEec
Confidence 477899999999999998876321 1111111 1111 223456789999999
Q ss_pred CCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEE
Q 006220 441 ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTAR 488 (656)
Q Consensus 441 ~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~ 488 (656)
.|++.+..|..+..++...+....-..+-+..|-...+..+...|.+.
T Consensus 113 hd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vl 160 (354)
T KOG4649|consen 113 HDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVL 160 (354)
T ss_pred CCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEE
Confidence 999999999999988887665443333444555223333344444443
No 338
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.95 E-value=0.00051 Score=74.86 Aligned_cols=265 Identities=15% Similarity=0.104 Sum_probs=142.0
Q ss_pred HhccceecCCCCCCceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccC
Q 006220 327 DLRNRVHLSSAALPSVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIG 406 (656)
Q Consensus 327 ~~~~~v~l~~~~~ps~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (656)
.....+++++........++.-+.++.+..+..|++..++|+|+..|.|.|+.++.......
T Consensus 52 sS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~------------------ 113 (726)
T KOG3621|consen 52 SSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL------------------ 113 (726)
T ss_pred cccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc------------------
Confidence 34456666665554444444445666677888999999999999999999998875211100
Q ss_pred CCCCceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCc----eeEEeeCCCccEEEEEEecCCCEEEEEE
Q 006220 407 PNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNA----NLVCYKGHNYPVWDVQFNPQGHYFASSS 482 (656)
Q Consensus 407 ~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~----~~~~~~~h~~~V~~l~~sp~~~~l~sgs 482 (656)
......-..|...|+|++|++++..+++|...|+|.+-.+++.. ..+.+-...++|..+.+. ++ ++++++
T Consensus 114 ----~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~-~LLVSt 187 (726)
T KOG3621|consen 114 ----DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QS-YLLVST 187 (726)
T ss_pred ----eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cc-eehHhh
Confidence 00001112388999999999999999999999999999888621 112223345677777765 33 333333
Q ss_pred CCCcEEEEECCCCceeEEec-CCCC--CeeEEEEcC----CCCEEEEEECCCcEEEEeCC-CCeeEEEEe----------
Q 006220 483 HDRTARIWSMDRIQPLRIMA-GHLS--DVDCVRWHI----NCNYIATGSSDKTVRLWDVS-SGECVRIFI---------- 544 (656)
Q Consensus 483 ~Dg~i~lwd~~~~~~~~~~~-~~~~--~V~~v~~~p----~~~~l~tgs~dg~V~iwd~~-~~~~~~~~~---------- 544 (656)
.- ...+++++......+=. ...+ +.-++-|.- +...|+++- -..|+|... .|..+++..
T Consensus 188 l~-r~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaR--PG~RlWead~~G~V~~Thqfk~ala~~p~ 264 (726)
T KOG3621|consen 188 LT-RCILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCAR--PGLRLWEADFAGEVIKTHQFKDALARPPA 264 (726)
T ss_pred hh-hhheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEec--CCCceEEeecceeEEEeeehhhhhccCCC
Confidence 22 23455555432111111 1112 222333322 233455442 235777665 344444332
Q ss_pred ---cCCC-----------CeEEEEEcC----CCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEE
Q 006220 545 ---GHRS-----------MILSLAMSP----DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLAS 606 (656)
Q Consensus 545 ---~h~~-----------~i~~l~~sp----~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s 606 (656)
.+.+ .-..+.|.. ++..+.+-+.-| |+|+|.++.+.+.-. .-...|..++. .++-|+.
T Consensus 265 p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v~l~s-e~~~DI~dVs~--~~neiFv 340 (726)
T KOG3621|consen 265 PEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQVYLWS-EGGHDILDVSH--CGNEIFV 340 (726)
T ss_pred CcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceEEEee-cCCCceeEEee--cCceEEE
Confidence 0111 000111110 122233333333 888887665544322 12233444443 4555666
Q ss_pred EECCCcEEEEeCCCCC
Q 006220 607 GSADCTVKLWDVTTST 622 (656)
Q Consensus 607 gs~Dg~I~iWd~~~~~ 622 (656)
-..||.+++..+.+..
T Consensus 341 L~~d~~l~~~sv~s~q 356 (726)
T KOG3621|consen 341 LNLDRGLKVESVASRQ 356 (726)
T ss_pred EecCCceeEEEeehhH
Confidence 6667777777776544
No 339
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.93 E-value=0.00049 Score=74.24 Aligned_cols=191 Identities=19% Similarity=0.198 Sum_probs=119.3
Q ss_pred EeecCccCEEEEEEccCCCEEEEEe---CC-CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEE-CCCc--EE
Q 006220 416 LYQGHSGPVYSASFSPLGDFILSSS---AD-TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRT--AR 488 (656)
Q Consensus 416 ~l~~h~~~V~~l~~spd~~~L~s~s---~D-g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs-~Dg~--i~ 488 (656)
.+..-...+..-.|+|++..++..+ .. ..+.++++.++....... ..+.-..-+|+|+|+.++.++ .||. |+
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy 265 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIY 265 (425)
T ss_pred EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEE
Confidence 3344456677788999998655332 22 469999999887654443 222333578999999877665 5564 56
Q ss_pred EEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEEC-CC--cEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEE
Q 006220 489 IWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DK--TVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASG 565 (656)
Q Consensus 489 lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg--~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~ 565 (656)
++|+......+ +....+.-+.=.|+|+|++|+..+. .| .|.++|...+...+ ++...+.-..-.|||||++|+..
T Consensus 266 ~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r-iT~~~~~~~~p~~SpdG~~i~~~ 343 (425)
T COG0823 266 LMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR-LTFSGGGNSNPVWSPDGDKIVFE 343 (425)
T ss_pred EEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE-eeccCCCCcCccCCCCCCEEEEE
Confidence 66777666433 3323233335678999999887654 34 46777776665533 33333333478899999999887
Q ss_pred EC-CCc--EEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECC
Q 006220 566 DE-DGT--IMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD 610 (656)
Q Consensus 566 ~~-dg~--I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~D 610 (656)
+. +|. |.+.|+.++..+..+ .+......-+|.+++..++..+..
T Consensus 344 ~~~~g~~~i~~~~~~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 344 SSSGGQWDIDKNDLASGGKIRIL-TSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred eccCCceeeEEeccCCCCcEEEc-cccccCCCCCcCCCCceEEEeccC
Confidence 64 344 777777666543322 233334455677888776665543
No 340
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.92 E-value=0.0042 Score=61.86 Aligned_cols=198 Identities=15% Similarity=0.163 Sum_probs=116.2
Q ss_pred EeecCccCEEEEEEccCCC-EEEEEeCCCeEEEEeccCCceeEEeeCC-CccEEEEEEecCCCEEEEEECCCcEEEEECC
Q 006220 416 LYQGHSGPVYSASFSPLGD-FILSSSADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493 (656)
Q Consensus 416 ~l~~h~~~V~~l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~ 493 (656)
.+.+-...+.+++|+|+.. ++++....+.|...+.+ ++.+..+.-. ....-+|++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 3445556799999999866 55666677888888875 6777766543 3457789998777766666568999999884
Q ss_pred CCc------eeEEec-----CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC---CeeEEEE--e------cCCCCeE
Q 006220 494 RIQ------PLRIMA-----GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS---GECVRIF--I------GHRSMIL 551 (656)
Q Consensus 494 ~~~------~~~~~~-----~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~---~~~~~~~--~------~h~~~i~ 551 (656)
... ....+. .+...+..++|.|.++.|+++-...-..+|.++. ...+... . .....+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 111121 2445689999999988888887777777776653 2222111 1 1234578
Q ss_pred EEEEcCC-CCEEEEEECCCcEEEEeCCCCeeeEeeeCCC---------ccEEEEEEcCCCCEEEEEECCCcEEEE
Q 006220 552 SLAMSPD-GRYMASGDEDGTIMMWDLASGRCVTPLMGHT---------SCVWTLAYSCEGSLLASGSADCTVKLW 616 (656)
Q Consensus 552 ~l~~sp~-g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~---------~~V~~l~~s~~~~~l~sgs~Dg~I~iW 616 (656)
+++++|. |.+++.+..+..|..+| ..|+.+..+.-.. ...-.++|.++|++.+++ .-+..+++
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 8999995 56677777888999999 6788776654222 246789999999765544 55555444
No 341
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.89 E-value=0.0089 Score=59.53 Aligned_cols=198 Identities=12% Similarity=0.163 Sum_probs=109.6
Q ss_pred EeeCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEE
Q 006220 347 FINTHNGLNCASISQDGS-LVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVY 425 (656)
Q Consensus 347 ~~~~~~~V~~l~fs~dg~-~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 425 (656)
+.+-...+..++|+|+.+ ++|+....+.|...+++. . ......+.+ .+-.-
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G-~--------------------------vlr~i~l~g-~~D~E 68 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG-K--------------------------VLRRIPLDG-FGDYE 68 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----------------------------EEEEEE-SS--SSEE
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC-C--------------------------EEEEEeCCC-CCCce
Confidence 334456699999999855 666666677777776542 0 011112222 34567
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeccCCce------eEEee-----CCCccEEEEEEecCCCEEEEEECCCcEEEEECCC
Q 006220 426 SASFSPLGDFILSSSADTTIRLWSTKLNAN------LVCYK-----GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR 494 (656)
Q Consensus 426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~------~~~~~-----~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~ 494 (656)
+|++..++.++++.-.++.+.++++..... ...+. .++..+-.++|+|.++.|+++-...-..+|.+..
T Consensus 69 gI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 69 GITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp EEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred eEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence 888887787777766789999998843221 11121 2456689999999888888887766666666543
Q ss_pred ---CceeEEe--------cCCCCCeeEEEEcCCC-CEEEEEECCCcEEEEeCCCCeeEEEEecCC---------CCeEEE
Q 006220 495 ---IQPLRIM--------AGHLSDVDCVRWHINC-NYIATGSSDKTVRLWDVSSGECVRIFIGHR---------SMILSL 553 (656)
Q Consensus 495 ---~~~~~~~--------~~~~~~V~~v~~~p~~-~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~---------~~i~~l 553 (656)
...+... ......+.+++++|.. ++++.+..++.|..+| .+|+.+..+.-.. ...-.|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGI 227 (248)
T PF06977_consen 149 FPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGI 227 (248)
T ss_dssp TT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEE
T ss_pred ccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEE
Confidence 1111111 1244568899999965 4555666778899999 6788776654322 246789
Q ss_pred EEcCCCCEEEEEECCCcEEEE
Q 006220 554 AMSPDGRYMASGDEDGTIMMW 574 (656)
Q Consensus 554 ~~sp~g~~L~s~~~dg~I~iw 574 (656)
+|.++|++.+++ +-+..++|
T Consensus 228 a~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 228 AFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp EE-TT--EEEEE-TTTEEEEE
T ss_pred EECCCCCEEEEc-CCceEEEe
Confidence 999998655544 55544443
No 342
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.89 E-value=0.018 Score=59.14 Aligned_cols=250 Identities=14% Similarity=0.099 Sum_probs=145.1
Q ss_pred EEEEEcCCCCEEEEEe----------CCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCE
Q 006220 355 NCASISQDGSLVAGGF----------SDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPV 424 (656)
Q Consensus 355 ~~l~fs~dg~~La~g~----------~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 424 (656)
-.+..|||++.+.+.+ ..-.|.+||..+......... +..... ... ...
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~i---------------P~k~R~----~~~--~~~ 97 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEI---------------PPKPRA----QVV--PYK 97 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEE---------------TTS-B------BS----G
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEec---------------CCcchh----eec--ccc
Confidence 3466899999888643 234599999886432221110 100000 000 112
Q ss_pred EEEEEccCCCEEEEEe--CCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECC-CCceeEEe
Q 006220 425 YSASFSPLGDFILSSS--ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD-RIQPLRIM 501 (656)
Q Consensus 425 ~~l~~spd~~~L~s~s--~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~-~~~~~~~~ 501 (656)
..+.++.|+++++..- --.+|.|.|+..++.+..+... .++.+--++ ..-|.+-|.||++.-..++ .++..+..
T Consensus 98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEEecC-CCceEEEecCCceEEEEECCCCCEeEee
Confidence 2357888898877653 3467999999988877766532 233332222 3468888999999999987 45544322
Q ss_pred c----CCCCC-eeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeE--EEEecC----------CCCeEEEEEcCCCCEEEE
Q 006220 502 A----GHLSD-VDCVRWHINCNYIATGSSDKTVRLWDVSSGECV--RIFIGH----------RSMILSLAMSPDGRYMAS 564 (656)
Q Consensus 502 ~----~~~~~-V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~--~~~~~h----------~~~i~~l~~sp~g~~L~s 564 (656)
. ....+ +..-++...+..++--+.+|.|+--|+...... ..+.-- .+.-.-+++++..+.|++
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 1 11111 223334445555666778999999888765432 122100 122344778875554444
Q ss_pred EE---CCC-------cEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCC-EEEEEE-CCCcEEEEeCCCCCceeeccc
Q 006220 565 GD---EDG-------TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS-LLASGS-ADCTVKLWDVTTSTKVLKTEE 629 (656)
Q Consensus 565 ~~---~dg-------~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~-~l~sgs-~Dg~I~iWd~~~~~~~~~~~~ 629 (656)
.- .+| .|.++|+.+++.+.++.. ..++.+|..+.+.+ +|++.+ .++.+.|||..+++.+.....
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 22 122 488899999999999874 23577999998765 665544 579999999999988766544
No 343
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=97.87 E-value=1.9e-05 Score=49.21 Aligned_cols=27 Identities=22% Similarity=0.477 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHH
Q 006220 4 LQVVEFVATYLKKKGFSEAENALQAEI 30 (656)
Q Consensus 4 ~~~~~~v~~yl~~~~~~~~e~~~~~e~ 30 (656)
++||++|.+||.++||..|.++|++|+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999995
No 344
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.84 E-value=0.00017 Score=78.42 Aligned_cols=137 Identities=13% Similarity=0.176 Sum_probs=102.2
Q ss_pred CccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEee-CCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 006220 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK-GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL 498 (656)
Q Consensus 420 h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~-~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~ 498 (656)
|...|.--+++..+++++.|+.-|.+++|+-.++.....-. +..+.+..+..|++..++|.|+..|.|.++-+....+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 45566667777789999999999999999988766543322 34556677788999999999999999999987664432
Q ss_pred EE--e----cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC----eeEEEEecCCCCeEEEEEc
Q 006220 499 RI--M----AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG----ECVRIFIGHRSMILSLAMS 556 (656)
Q Consensus 499 ~~--~----~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~----~~~~~~~~h~~~i~~l~~s 556 (656)
.. + ..|...|+|++|++|+..+++|...|+|.+-.+.+. -....+....+.|..+...
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 21 1 146788999999999999999999999999887762 1122233445677777765
No 345
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.83 E-value=0.0021 Score=69.37 Aligned_cols=190 Identities=18% Similarity=0.165 Sum_probs=115.7
Q ss_pred EEeeCCCCeEEEEEcCCCCEEEEEe---CC-CcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCc
Q 006220 346 TFINTHNGLNCASISQDGSLVAGGF---SD-SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHS 421 (656)
Q Consensus 346 ~~~~~~~~V~~l~fs~dg~~La~g~---~d-g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~ 421 (656)
.+......+..-+|+|++..++.-. .. ..+.++++..... .....+.+
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~--------------------------~~i~~~~g-- 238 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR--------------------------PVILNFNG-- 238 (425)
T ss_pred EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcc--------------------------ceeeccCC--
Confidence 4445556688889999988876542 22 3588888775321 11122223
Q ss_pred cCEEEEEEccCCCEEE-EEeCCCe--EEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC-CC--cEEEEECCCC
Q 006220 422 GPVYSASFSPLGDFIL-SSSADTT--IRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH-DR--TARIWSMDRI 495 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~-s~s~Dg~--I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~-Dg--~i~lwd~~~~ 495 (656)
.-..-+|+|||+.|+ +...||. |.+.|+.++.. ..+..-.+.-+.=.|+|+|++++..+. .| .|.+++.+..
T Consensus 239 -~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 239 -NNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred -ccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC
Confidence 333568999999766 5555665 55556665553 333332333336689999999877763 34 4666677766
Q ss_pred ceeEEecCCCCCeeEEEEcCCCCEEEEEECC-Cc--EEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 006220 496 QPLRIMAGHLSDVDCVRWHINCNYIATGSSD-KT--VRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE 567 (656)
Q Consensus 496 ~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d-g~--V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~ 567 (656)
...+..... ..-.+-.|+|+|.+|+..+.. |. |.+.|+.++...+.+. +......-.|.|+|+.+...+.
T Consensus 317 ~~~riT~~~-~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 317 QVTRLTFSG-GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred ceeEeeccC-CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEecc
Confidence 554433322 222277899999999887643 44 6777777666555443 3334445678888887776543
No 346
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.78 E-value=0.0055 Score=65.54 Aligned_cols=204 Identities=13% Similarity=0.148 Sum_probs=123.2
Q ss_pred CEEEEEEccCCCEEEEEeCCCeEEEEeccCCce-------------------------------------------eEEe
Q 006220 423 PVYSASFSPLGDFILSSSADTTIRLWSTKLNAN-------------------------------------------LVCY 459 (656)
Q Consensus 423 ~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~-------------------------------------------~~~~ 459 (656)
.|+.++|+++..-|++|...|.|.||.....+. ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 588999999989999999999999986532111 0112
Q ss_pred eCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec--C------CCCCeeEEEEcC-----CC---CEEEEE
Q 006220 460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA--G------HLSDVDCVRWHI-----NC---NYIATG 523 (656)
Q Consensus 460 ~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~--~------~~~~V~~v~~~p-----~~---~~l~tg 523 (656)
....++|++++.| +=.+++.|..+|++.|.|++....+..-. . ....|+++.|.. ++ -.+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 2345789999998 44589999999999999998877665422 2 234578888862 22 578899
Q ss_pred ECCCcEEEEeCCC---Cee----EEEEecCCCCeEEEE-EcCC---------------------CCEEEEEECCCcEEEE
Q 006220 524 SSDKTVRLWDVSS---GEC----VRIFIGHRSMILSLA-MSPD---------------------GRYMASGDEDGTIMMW 574 (656)
Q Consensus 524 s~dg~V~iwd~~~---~~~----~~~~~~h~~~i~~l~-~sp~---------------------g~~L~s~~~dg~I~iw 574 (656)
+..|.+.+|.+.- +.. ......+.++|..|. |+.+ ..+++++ .+..++++
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~irv~ 240 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESDIRVF 240 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEEEE
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccceEEE
Confidence 9999999998751 211 122224566666655 3221 1134444 46789999
Q ss_pred eCCCCeeeEeeeCCCccEEEEEEc-----CCCCEEEEEECCCcEEEEeCCCCCceeecc
Q 006220 575 DLASGRCVTPLMGHTSCVWTLAYS-----CEGSLLASGSADCTVKLWDVTTSTKVLKTE 628 (656)
Q Consensus 575 D~~~~~~~~~~~~h~~~V~~l~~s-----~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~ 628 (656)
...+.+..+......-....+.+- ..+..|++-..+|.|+++.+..-+.+....
T Consensus 241 ~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~ 299 (395)
T PF08596_consen 241 KPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVS 299 (395)
T ss_dssp -TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE
T ss_pred eCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhccc
Confidence 999888777665333334445552 356788999999999999999877665543
No 347
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.78 E-value=0.018 Score=58.73 Aligned_cols=225 Identities=15% Similarity=0.133 Sum_probs=131.9
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEe
Q 006220 361 QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS 440 (656)
Q Consensus 361 ~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s 440 (656)
..++.|+.|+.+| |.++++.... .... ..+..+|..+...++-+.|++-+
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~---------------------------~~~~--i~~~~~I~ql~vl~~~~~llvLs 54 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPS---------------------------KPTR--ILKLSSITQLSVLPELNLLLVLS 54 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCc---------------------------ccee--EeecceEEEEEEecccCEEEEEc
Confidence 4588999999998 8888872200 0011 11223399999998877776665
Q ss_pred CCCeEEEEeccCCceeEEe--------------eCCCccEEEEE--EecCCCEEEEEECCCcEEEEECCCC-----ceeE
Q 006220 441 ADTTIRLWSTKLNANLVCY--------------KGHNYPVWDVQ--FNPQGHYFASSSHDRTARIWSMDRI-----QPLR 499 (656)
Q Consensus 441 ~Dg~I~lwd~~~~~~~~~~--------------~~h~~~V~~l~--~sp~~~~l~sgs~Dg~i~lwd~~~~-----~~~~ 499 (656)
|+++.++++......... ......+...+ -...+...+++...++|.+|..... +..+
T Consensus 55 -d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~k 133 (275)
T PF00780_consen 55 -DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLK 133 (275)
T ss_pred -CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeE
Confidence 499999998754443311 11222344444 1224444445555568888877542 3445
Q ss_pred EecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCC------------CCeEEEEEcCCCCEEEEEEC
Q 006220 500 IMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR------------SMILSLAMSPDGRYMASGDE 567 (656)
Q Consensus 500 ~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~------------~~i~~l~~sp~g~~L~s~~~ 567 (656)
.+. -...+.+++|. ++.++.|..+ ...+.|+.++.....+.... .++..+.. +++.+|++.
T Consensus 134 e~~-lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~-- 206 (275)
T PF00780_consen 134 EIS-LPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY-- 206 (275)
T ss_pred EEE-cCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--
Confidence 554 33778899998 5678887754 57889999877655442111 23333333 345666653
Q ss_pred CCcEEEEeCCCCeeeE--eeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeecc
Q 006220 568 DGTIMMWDLASGRCVT--PLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTE 628 (656)
Q Consensus 568 dg~I~iwD~~~~~~~~--~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~ 628 (656)
|..-.+.|. .|+... .+.- ...+.++++. ..+|+..+. +.|.||++.+++.++...
T Consensus 207 ~~~g~fv~~-~G~~~r~~~i~W-~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 207 DNIGVFVNK-NGEPSRKSTIQW-SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIP 264 (275)
T ss_pred cceEEEEcC-CCCcCcccEEEc-CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence 333333443 454333 2222 2345566663 457777665 559999999997766554
No 348
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.76 E-value=0.011 Score=60.97 Aligned_cols=184 Identities=13% Similarity=0.179 Sum_probs=116.2
Q ss_pred cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEee----C-CCccEEEEEEecCCCEEEEEEC---------CCcE
Q 006220 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK----G-HNYPVWDVQFNPQGHYFASSSH---------DRTA 487 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~----~-h~~~V~~l~~sp~~~~l~sgs~---------Dg~i 487 (656)
+.+.++..-..+..|+++.. .+.+++.+++..+..+. + .....+++...|+|.+.++... -..-
T Consensus 66 ~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G 143 (307)
T COG3386 66 GGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTG 143 (307)
T ss_pred CCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcc
Confidence 33445544444555665543 37777776555522221 1 1234567888999887665544 1122
Q ss_pred EEEECC-CCceeEEecCCCCCeeEEEEcCCCCEEEEEEC-CCcEEEEeCCC--C----ee-EEEEecCCCCeEEEEEcCC
Q 006220 488 RIWSMD-RIQPLRIMAGHLSDVDCVRWHINCNYIATGSS-DKTVRLWDVSS--G----EC-VRIFIGHRSMILSLAMSPD 558 (656)
Q Consensus 488 ~lwd~~-~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~-dg~V~iwd~~~--~----~~-~~~~~~h~~~i~~l~~sp~ 558 (656)
.+|-++ .+..++.+..+...-+.++|||+++.++.+.. .+.|.-|++.. + .. ...+....+..-.++...+
T Consensus 144 ~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDad 223 (307)
T COG3386 144 SLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDAD 223 (307)
T ss_pred eEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCC
Confidence 455555 56677777777777889999999988877655 47788887652 1 11 1122233455667778888
Q ss_pred CCEEEEEECCC-cEEEEeCCCCeeeEeeeCCCccEEEEEEc-CCCCEEEEEE
Q 006220 559 GRYMASGDEDG-TIMMWDLASGRCVTPLMGHTSCVWTLAYS-CEGSLLASGS 608 (656)
Q Consensus 559 g~~L~s~~~dg-~I~iwD~~~~~~~~~~~~h~~~V~~l~~s-~~~~~l~sgs 608 (656)
|.+-+++..+| .|.+|+.. |+.+..+..+...+++++|- ++.+.|...+
T Consensus 224 G~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 224 GNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 88775555554 89999987 99999988876778888884 4445554444
No 349
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.74 E-value=0.014 Score=64.78 Aligned_cols=182 Identities=16% Similarity=0.194 Sum_probs=114.7
Q ss_pred CCCeEEEEeccCCceeEEeeCCCc--------------------cEE-EEEEecCCCEEEEEECCC--------------
Q 006220 441 ADTTIRLWSTKLNANLVCYKGHNY--------------------PVW-DVQFNPQGHYFASSSHDR-------------- 485 (656)
Q Consensus 441 ~Dg~I~lwd~~~~~~~~~~~~h~~--------------------~V~-~l~~sp~~~~l~sgs~Dg-------------- 485 (656)
.+|.+..+|..+++.+-.+..... .++ ...+.+.+..++.++.++
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence 467888999998888776653211 111 234444566777777665
Q ss_pred ----cEEEEECCCCceeEEecCCCCCee------EEEEc----CCCC---EEEEEECCCcEEEEeCCCCeeEEEEecCCC
Q 006220 486 ----TARIWSMDRIQPLRIMAGHLSDVD------CVRWH----INCN---YIATGSSDKTVRLWDVSSGECVRIFIGHRS 548 (656)
Q Consensus 486 ----~i~lwd~~~~~~~~~~~~~~~~V~------~v~~~----p~~~---~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~ 548 (656)
.+..+|..+++..-.+........ ...+. -++. .+++++.+|.+...|.++|+.+......
T Consensus 253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-- 330 (488)
T cd00216 253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-- 330 (488)
T ss_pred CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--
Confidence 799999999988877642111110 00111 1333 6788889999999999999988765421
Q ss_pred CeEEEEEcCCCCEEEEE------------------ECCCcEEEEeCCCCeeeEeeeCCC--------ccEE--EEEEcCC
Q 006220 549 MILSLAMSPDGRYMASG------------------DEDGTIMMWDLASGRCVTPLMGHT--------SCVW--TLAYSCE 600 (656)
Q Consensus 549 ~i~~l~~sp~g~~L~s~------------------~~dg~I~iwD~~~~~~~~~~~~h~--------~~V~--~l~~s~~ 600 (656)
...++.+| ..++.+ ..+|.+.-.|+.+|+.+-+..... .+.. .+. ..
T Consensus 331 -~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~ 405 (488)
T cd00216 331 -EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TA 405 (488)
T ss_pred -ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ec
Confidence 11233444 223222 235788888998888776654321 1111 122 24
Q ss_pred CCEEEEEECCCcEEEEeCCCCCceeeccc
Q 006220 601 GSLLASGSADCTVKLWDVTTSTKVLKTEE 629 (656)
Q Consensus 601 ~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~ 629 (656)
+..|+.++.||.|+.+|..+++.+.+.+.
T Consensus 406 g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 406 GNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred CCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 57888899999999999999998877654
No 350
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.019 Score=61.59 Aligned_cols=217 Identities=16% Similarity=0.143 Sum_probs=148.1
Q ss_pred eEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccC
Q 006220 354 LNCASISQDGSL-VAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL 432 (656)
Q Consensus 354 V~~l~fs~dg~~-La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 432 (656)
-.+++.++++.. .+....+..|.+.|...... ......+. ....++++|+
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~---------------------------~~~~~vG~--~P~~~~~~~~ 126 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV---------------------------LGSIPVGL--GPVGLAVDPD 126 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccce---------------------------eeEeeecc--CCceEEECCC
Confidence 456788888874 44444568899998543111 11111122 4567899999
Q ss_pred CCEEEEEeC---CCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEE-CCCcEEEEECCCCceeE-E---ecCC
Q 006220 433 GDFILSSSA---DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQPLR-I---MAGH 504 (656)
Q Consensus 433 ~~~L~s~s~---Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs-~Dg~i~lwd~~~~~~~~-~---~~~~ 504 (656)
+..+..+.. ++++.+.|..+.........-..| ..++++|+|..++++. .++.+.+.|.......+ . ...-
T Consensus 127 ~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~ 205 (381)
T COG3391 127 GKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV 205 (381)
T ss_pred CCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccccc
Confidence 987766555 689999999988887775544455 8999999999776665 78999999977665543 0 0112
Q ss_pred CCCeeEEEEcCCCCEEEEEECC---CcEEEEeCCCCeeEEE-EecCCCCeEEEEEcCCCCEEEEEEC-CCcEEEEeCCCC
Q 006220 505 LSDVDCVRWHINCNYIATGSSD---KTVRLWDVSSGECVRI-FIGHRSMILSLAMSPDGRYMASGDE-DGTIMMWDLASG 579 (656)
Q Consensus 505 ~~~V~~v~~~p~~~~l~tgs~d---g~V~iwd~~~~~~~~~-~~~h~~~i~~l~~sp~g~~L~s~~~-dg~I~iwD~~~~ 579 (656)
......+.+.|+|+++++.... +.+...|..++..... ...-......+.++|+|.++.+... .+.+.+-|..+.
T Consensus 206 ~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 206 GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 2334678899999977665443 5899999998877765 2211114566899999999888744 488999999888
Q ss_pred eeeEeeeCCC---ccEEEEEEcCC
Q 006220 580 RCVTPLMGHT---SCVWTLAYSCE 600 (656)
Q Consensus 580 ~~~~~~~~h~---~~V~~l~~s~~ 600 (656)
.......... ..+..+++.+.
T Consensus 286 ~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 286 RVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred ceeeeecccccccccceeccceee
Confidence 7777655333 34566666553
No 351
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.69 E-value=0.016 Score=61.54 Aligned_cols=187 Identities=18% Similarity=0.237 Sum_probs=103.9
Q ss_pred ccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEE-eeCC----------------CccEEEEEEecCCCEEEEEEC
Q 006220 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVC-YKGH----------------NYPVWDVQFNPQGHYFASSSH 483 (656)
Q Consensus 421 ~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~-~~~h----------------~~~V~~l~~sp~~~~l~sgs~ 483 (656)
...+....|||+|+.++... ++.|.+++..++..... ..+. -..-..+.|||++++|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 56788899999999998876 46899999876643321 1120 011246889999999988653
Q ss_pred C-Cc-----------------------------------EEEEECCCCceeEEe-----cCCCCCeeEEEEcCCCCEEEE
Q 006220 484 D-RT-----------------------------------ARIWSMDRIQPLRIM-----AGHLSDVDCVRWHINCNYIAT 522 (656)
Q Consensus 484 D-g~-----------------------------------i~lwd~~~~~~~~~~-----~~~~~~V~~v~~~p~~~~l~t 522 (656)
| .. +.++|+.+++....- .....-+..+.|.+++..|+.
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 2 22 223344333322111 112334678889998884444
Q ss_pred E--ECC---CcEEEEeCCCCeeEEEEec-CCCCe---EEEEEc-CCCC-EEEEEECCCc--EEEEeCCCCeeeEeeeCCC
Q 006220 523 G--SSD---KTVRLWDVSSGECVRIFIG-HRSMI---LSLAMS-PDGR-YMASGDEDGT--IMMWDLASGRCVTPLMGHT 589 (656)
Q Consensus 523 g--s~d---g~V~iwd~~~~~~~~~~~~-h~~~i---~~l~~s-p~g~-~L~s~~~dg~--I~iwD~~~~~~~~~~~~h~ 589 (656)
. +.+ ..+.++|..++.+...... ..+.| ....|. +++. +|.....+|. |.+++...+. ...+....
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~ 279 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGD 279 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SS
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCc
Confidence 3 333 2467778877765443332 22322 245554 5554 5556667775 5555655554 44555555
Q ss_pred ccEEE-EEEcCCCCEEE-EEEC
Q 006220 590 SCVWT-LAYSCEGSLLA-SGSA 609 (656)
Q Consensus 590 ~~V~~-l~~s~~~~~l~-sgs~ 609 (656)
-.|.. +.|+++++.|. ++..
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~ 301 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANG 301 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESS
T ss_pred eeecccceEcCCCCEEEEEecC
Confidence 56654 67788766554 4544
No 352
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.65 E-value=0.018 Score=61.11 Aligned_cols=244 Identities=17% Similarity=0.173 Sum_probs=125.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecC-ccCEEEEEE
Q 006220 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGH-SGPVYSASF 429 (656)
Q Consensus 351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~~l~~ 429 (656)
...+....|||+|+.+|.. .++.|.++++............ ... +. ++ ..--....- -+.-..+-|
T Consensus 42 ~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~lT~dg--~~~------i~--nG--~~dwvyeEEv~~~~~~~~W 108 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQLTTDG--EPG------IY--NG--VPDWVYEEEVFDRRSAVWW 108 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEESES----TTT------EE--ES--B--HHHHHHTSSSSBSEEE
T ss_pred ccccccceeecCCCeeEEE-ecCceEEEECCCCCeEEecccc--cee------EE--cC--ccceeccccccccccceEE
Confidence 4568899999999999988 5688999987654222111100 000 00 00 000000000 011134667
Q ss_pred ccCCCEEEEEeCC----------------------------------C--eEEEEeccCCceeE-Ee----eCCCccEEE
Q 006220 430 SPLGDFILSSSAD----------------------------------T--TIRLWSTKLNANLV-CY----KGHNYPVWD 468 (656)
Q Consensus 430 spd~~~L~s~s~D----------------------------------g--~I~lwd~~~~~~~~-~~----~~h~~~V~~ 468 (656)
|||+++|+....| . .+.++|+.+++... .. ..-..-+..
T Consensus 109 Spd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~ 188 (353)
T PF00930_consen 109 SPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTR 188 (353)
T ss_dssp -TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEE
T ss_pred CCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCccc
Confidence 7777766654432 1 23345555544321 11 123445788
Q ss_pred EEEecCCCEEEEEE--CC---CcEEEEECCCCceeEEec----CCCCCeeEEEEc-CCCC-EEEEEECCCc--EEEEeCC
Q 006220 469 VQFNPQGHYFASSS--HD---RTARIWSMDRIQPLRIMA----GHLSDVDCVRWH-INCN-YIATGSSDKT--VRLWDVS 535 (656)
Q Consensus 469 l~~sp~~~~l~sgs--~D---g~i~lwd~~~~~~~~~~~----~~~~~V~~v~~~-p~~~-~l~tgs~dg~--V~iwd~~ 535 (656)
+.|.+++..|+..- .+ ..+.++|..++....... +-...-....|. +++. ++.....+|. |.+++..
T Consensus 189 v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~ 268 (353)
T PF00930_consen 189 VGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLD 268 (353)
T ss_dssp EEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETT
T ss_pred ceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccc
Confidence 99999988444443 22 246667776655443332 111223355554 5554 5555556775 5555655
Q ss_pred CCeeEEEEecCCCCeEE-EEEcCCCCEEE-EEECC----CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEE
Q 006220 536 SGECVRIFIGHRSMILS-LAMSPDGRYMA-SGDED----GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGS 608 (656)
Q Consensus 536 ~~~~~~~~~~h~~~i~~-l~~sp~g~~L~-s~~~d----g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs 608 (656)
.+. .+.++...-.|+. +.++++++.|+ ++..+ ..|..-++..+..+..+....+....+.|||++++++-.+
T Consensus 269 ~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 269 GGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp SSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred ccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 555 3445544556644 67888877554 44432 2565566662344455554333337899999999877554
No 353
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.64 E-value=0.0015 Score=74.64 Aligned_cols=135 Identities=14% Similarity=0.157 Sum_probs=95.8
Q ss_pred eCCCeEEEEeccCCceeEEeeCCCcc-EEEEEEec-----CCCEEEEEECCCcEEEEECCCCc--eeEEe---cCCCCCe
Q 006220 440 SADTTIRLWSTKLNANLVCYKGHNYP-VWDVQFNP-----QGHYFASSSHDRTARIWSMDRIQ--PLRIM---AGHLSDV 508 (656)
Q Consensus 440 s~Dg~I~lwd~~~~~~~~~~~~h~~~-V~~l~~sp-----~~~~l~sgs~Dg~i~lwd~~~~~--~~~~~---~~~~~~V 508 (656)
.....|+-.|+.+|+.+..++.|... |.+++-.. ....-++|-.+..+..||.+-.. .+..- -......
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 34577999999999999999887643 55543321 13345667778899999988532 22110 0234557
Q ss_pred eEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220 509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (656)
Q Consensus 509 ~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~ 576 (656)
.|++-..+| +||+|+.+|.||+||--..+....+.+-..+|..|..+.||+||++.+ +..+.+++.
T Consensus 581 s~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 581 SCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred eEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 788776665 899999999999999433333344567778999999999999988776 457778775
No 354
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.62 E-value=0.0039 Score=67.63 Aligned_cols=181 Identities=14% Similarity=0.132 Sum_probs=99.9
Q ss_pred eecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 006220 417 YQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ 496 (656)
Q Consensus 417 l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~ 496 (656)
+....-....++++|+|++++.+ .||.-.|+......... .+.....+|.+ .+.+|+-...++|.++.--...
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEec-CccEEEEECCCeEEEEEcCccc
Confidence 33344557899999999998885 46778888754443322 23445688998 4557777778999996322222
Q ss_pred eeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220 497 PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (656)
Q Consensus 497 ~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~ 576 (656)
....+... ..+..+-. |..|+..+.+ .|.+||..+++.++.+... +|..+.|+++|.+++..+.+ .+.|++.
T Consensus 101 ~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 101 VVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred cceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 22233321 23444432 7777776544 8999999999999988643 48999999999999999865 6888876
Q ss_pred CCC-----------eeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEE
Q 006220 577 ASG-----------RCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKL 615 (656)
Q Consensus 577 ~~~-----------~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i 615 (656)
... ..+..+..-...|.+.+|..+ .++-.+.. .|+.
T Consensus 173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY 219 (443)
T PF04053_consen 173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY 219 (443)
T ss_dssp -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE
T ss_pred cchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE
Confidence 433 022333222457888888765 44333333 5555
No 355
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.03 Score=60.09 Aligned_cols=200 Identities=17% Similarity=0.174 Sum_probs=142.0
Q ss_pred EEEEEEccCCCEE-EEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEEC---CCcEEEEECCCCceeE
Q 006220 424 VYSASFSPLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSH---DRTARIWSMDRIQPLR 499 (656)
Q Consensus 424 V~~l~~spd~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~---Dg~i~lwd~~~~~~~~ 499 (656)
-.+++.++.+..+ +....++.|.+.|..+.........-. ....++++|++..+.++.. ++++.+.|..+.+...
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 3567888888744 455556899999988777666554333 4568999999988777765 6889999988888877
Q ss_pred EecCCCCCeeEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeeEE-----EEecCCCCeEEEEEcCCCCEEEEEECC---Cc
Q 006220 500 IMAGHLSDVDCVRWHINCNYIATGS-SDKTVRLWDVSSGECVR-----IFIGHRSMILSLAMSPDGRYMASGDED---GT 570 (656)
Q Consensus 500 ~~~~~~~~V~~v~~~p~~~~l~tgs-~dg~V~iwd~~~~~~~~-----~~~~h~~~i~~l~~sp~g~~L~s~~~d---g~ 570 (656)
.......+ ..+++.|+|+.+++.. .++.|.+.|..+....+ ..... ..-..+.++|+|..+.+.... +.
T Consensus 155 ~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 155 TIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-TGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred EEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-CCCceEEECCCCCEEEEEeccCCCce
Confidence 75543344 8899999999776665 78899999977665553 11112 233568899999966665433 58
Q ss_pred EEEEeCCCCeeeEeeeCCCc-cEEEEEEcCCCCEEEEEECC-CcEEEEeCCCCCceee
Q 006220 571 IMMWDLASGRCVTPLMGHTS-CVWTLAYSCEGSLLASGSAD-CTVKLWDVTTSTKVLK 626 (656)
Q Consensus 571 I~iwD~~~~~~~~~~~~h~~-~V~~l~~s~~~~~l~sgs~D-g~I~iWd~~~~~~~~~ 626 (656)
+...|..++.....-..-.. ....+..+|+|..+.+.... +.+.+-|..+......
T Consensus 233 v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~ 290 (381)
T COG3391 233 VLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKT 290 (381)
T ss_pred EEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence 99999988877665221111 45678899999988887544 8899999887665443
No 356
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00092 Score=68.29 Aligned_cols=130 Identities=11% Similarity=0.190 Sum_probs=95.3
Q ss_pred EEEEeccCCceeEEeeCCCccEEEEEEecCCC-EEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCC-CCEEEE
Q 006220 445 IRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-YFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHIN-CNYIAT 522 (656)
Q Consensus 445 I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~-~~~l~t 522 (656)
|++.+..+.+....+.+|...|.+++|||..+ .+..++.+.+|++.|+++...+..+..+ ..+.+++|.-+ .++|++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 77777666666667778889999999999776 7888999999999999999888888877 88999999964 568889
Q ss_pred EECCCcEEEEeCCCCee-EEEEec--CCCCeEEEE------EcCCCCEEEEEECCCcEEEEeCC
Q 006220 523 GSSDKTVRLWDVSSGEC-VRIFIG--HRSMILSLA------MSPDGRYMASGDEDGTIMMWDLA 577 (656)
Q Consensus 523 gs~dg~V~iwd~~~~~~-~~~~~~--h~~~i~~l~------~sp~g~~L~s~~~dg~I~iwD~~ 577 (656)
|...|.|.+||++..+- +..+.+ ...+|..++ ..+.|.+|+....+ +..|.+.
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~ 315 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIV 315 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhh
Confidence 99999999999986532 222222 123343333 23345566555543 5566653
No 357
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.57 E-value=0.022 Score=59.58 Aligned_cols=198 Identities=13% Similarity=0.160 Sum_probs=113.7
Q ss_pred CCCCeEEEEE---cC----CCCEEEEEeC---------C-CcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCce
Q 006220 350 THNGLNCASI---SQ----DGSLVAGGFS---------D-SSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKR 412 (656)
Q Consensus 350 ~~~~V~~l~f---s~----dg~~La~g~~---------d-g~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (656)
....++|++. .. ...++++|+. . |.|.++++...+. ....-
T Consensus 22 ~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~----------------------~~~~l 79 (321)
T PF03178_consen 22 PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPE----------------------NNFKL 79 (321)
T ss_dssp TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS---------------------------EE
T ss_pred CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccc----------------------cceEE
Confidence 3444555543 33 2578888864 2 8899999875200 00011
Q ss_pred eeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCC--CccEEEEEEecCCCEEEEEECCCcEEEE
Q 006220 413 SYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH--NYPVWDVQFNPQGHYFASSSHDRTARIW 490 (656)
Q Consensus 413 ~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h--~~~V~~l~~sp~~~~l~sgs~Dg~i~lw 490 (656)
.........++|++++-- .+ .|+.+. .+.|.+|++.....+.....+ ...+.++.. .++++++|.....+.++
T Consensus 80 ~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~ 154 (321)
T PF03178_consen 80 KLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLL 154 (321)
T ss_dssp EEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEE
T ss_pred EEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEE
Confidence 112223457899999877 34 455444 368999999877723222222 234555554 47799999988888887
Q ss_pred ECCC-CceeEEec--CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-------C--eeEEEEec-CCCCeEEE---E
Q 006220 491 SMDR-IQPLRIMA--GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-------G--ECVRIFIG-HRSMILSL---A 554 (656)
Q Consensus 491 d~~~-~~~~~~~~--~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~-------~--~~~~~~~~-h~~~i~~l---~ 554 (656)
..+. ...+..+. .....++++.|-++++.++++..+|.+.++.... + .......- ....|+++ .
T Consensus 155 ~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~ 234 (321)
T PF03178_consen 155 RYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGS 234 (321)
T ss_dssp EEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--
T ss_pred EEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEE
Confidence 5543 22233333 2345588888886767999999999999987752 2 22222222 23467777 4
Q ss_pred EcC--CCC------EEEEEECCCcEEEE
Q 006220 555 MSP--DGR------YMASGDEDGTIMMW 574 (656)
Q Consensus 555 ~sp--~g~------~L~s~~~dg~I~iw 574 (656)
+.| .+. .++.++.+|.|...
T Consensus 235 l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 235 LIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eeecCCCCcccccceEEEEecCCEEEEE
Confidence 445 222 47778888988843
No 358
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.52 E-value=0.031 Score=58.47 Aligned_cols=179 Identities=15% Similarity=0.155 Sum_probs=106.4
Q ss_pred CCEEEEEeC----------CCeEEEEeccCC----ceeEEe--eCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCc
Q 006220 433 GDFILSSSA----------DTTIRLWSTKLN----ANLVCY--KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ 496 (656)
Q Consensus 433 ~~~L~s~s~----------Dg~I~lwd~~~~----~~~~~~--~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~ 496 (656)
..+++.|+. .|.|.++++... ..+... ....++|.+++-- ++ +++++. ++.+++|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcc
Confidence 456776654 288999999873 122221 2357788888776 34 444444 4889999998877
Q ss_pred eeEEecCCCC--CeeEEEEcCCCCEEEEEECCCcEEEEeCCC-CeeEEEEec--CCCCeEEEEEcCCCCEEEEEECCCcE
Q 006220 497 PLRIMAGHLS--DVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFIG--HRSMILSLAMSPDGRYMASGDEDGTI 571 (656)
Q Consensus 497 ~~~~~~~~~~--~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~-~~~~~~~~~--h~~~i~~l~~sp~g~~L~s~~~dg~I 571 (656)
.+.....+.. .+.++.. .++++++|.....+.++..+. +..+..+.. ....++++.|-++++.++++..+|.+
T Consensus 119 ~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl 196 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNL 196 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEE
T ss_pred cchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeE
Confidence 2322222223 4555544 466999999988888875443 332333322 34468889998777899999999999
Q ss_pred EEEeCCC-------Ce-eeE-eeeC-CCccEEEE---EEcC--CC------CEEEEEECCCcEEEE
Q 006220 572 MMWDLAS-------GR-CVT-PLMG-HTSCVWTL---AYSC--EG------SLLASGSADCTVKLW 616 (656)
Q Consensus 572 ~iwD~~~-------~~-~~~-~~~~-h~~~V~~l---~~s~--~~------~~l~sgs~Dg~I~iW 616 (656)
.++.... +. .+. ...- ....|+++ ++.| .+ ..++.++.+|.|.+.
T Consensus 197 ~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 197 FVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 9998763 22 222 2222 23567777 4444 12 248888899998844
No 359
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.50 E-value=0.047 Score=53.18 Aligned_cols=142 Identities=8% Similarity=-0.007 Sum_probs=92.8
Q ss_pred CEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEE
Q 006220 434 DFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRW 513 (656)
Q Consensus 434 ~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~ 513 (656)
.+++.||..+.+.--|..+|....... -...|.+-+.- -|++++.|...|.+++.+..++.....+..-..--.....
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~ 101 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQC 101 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEE
Confidence 467778888888888888777654322 12222222222 3678999999999999999999877766533221122345
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 514 HINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (656)
Q Consensus 514 ~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~ 577 (656)
.+++..+.+|+.|++.+..|.++..++...+-..+...+-+..|-...|+.+...|.+.--..+
T Consensus 102 d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 102 DFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKN 165 (354)
T ss_pred cCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccC
Confidence 6889999999999999999999999988765444433444555522334444444554443433
No 360
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.37 E-value=0.025 Score=62.85 Aligned_cols=193 Identities=12% Similarity=0.122 Sum_probs=122.9
Q ss_pred CCEEEEEeCCCeEEEEeccCCceeEEeeCCCc------cEE--EEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCC
Q 006220 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNY------PVW--DVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (656)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~------~V~--~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~ 504 (656)
+..++.++.++.|.-.|..+++.+-.+..... .+. .+... ++..++.++.++.++.+|.++++.+-.+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 44567777889999999999888766653322 110 11111 2267888889999999999999988776533
Q ss_pred CCC-----ee-EEEEcCCCCEEEEEE---------CCCcEEEEeCCCCeeEEEEecCCCC--------------------
Q 006220 505 LSD-----VD-CVRWHINCNYIATGS---------SDKTVRLWDVSSGECVRIFIGHRSM-------------------- 549 (656)
Q Consensus 505 ~~~-----V~-~v~~~p~~~~l~tgs---------~dg~V~iwd~~~~~~~~~~~~h~~~-------------------- 549 (656)
... +. ...+. +..++.++ .++.+.-+|..+|+.+..+......
T Consensus 140 ~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 221 11 11121 24455554 3678999999999988776542110
Q ss_pred e-EEEEEcCCCCEEEEEECCC------------------cEEEEeCCCCeeeEeeeCCCccEE------EEEEc----CC
Q 006220 550 I-LSLAMSPDGRYMASGDEDG------------------TIMMWDLASGRCVTPLMGHTSCVW------TLAYS----CE 600 (656)
Q Consensus 550 i-~~l~~sp~g~~L~s~~~dg------------------~I~iwD~~~~~~~~~~~~h~~~V~------~l~~s----~~ 600 (656)
+ ...++.+.+..++.++.++ .|.-+|..+|+.+-.+..-....+ ...+. -+
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~ 297 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKD 297 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence 1 1234455566777776665 799999999998877642111111 00111 23
Q ss_pred CC---EEEEEECCCcEEEEeCCCCCceeecc
Q 006220 601 GS---LLASGSADCTVKLWDVTTSTKVLKTE 628 (656)
Q Consensus 601 ~~---~l~sgs~Dg~I~iWd~~~~~~~~~~~ 628 (656)
+. .++.++.+|.+...|..+++.+....
T Consensus 298 g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 298 GKPVPAIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred CCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence 33 67888899999999999999887654
No 361
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.34 E-value=0.047 Score=59.12 Aligned_cols=175 Identities=13% Similarity=0.057 Sum_probs=96.1
Q ss_pred eEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec-------CCCCCeeEEEEcCC
Q 006220 444 TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA-------GHLSDVDCVRWHIN 516 (656)
Q Consensus 444 ~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~-------~~~~~V~~v~~~p~ 516 (656)
.|.+|+.. |..+..+.=..+.|.++.|+.+ ..|++...||+++++|+.... ...+. .....+.+..+..+
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCC
Confidence 59999877 5566554433378999999975 456677789999999986433 11111 11111222233335
Q ss_pred CCEEEEEECCCcEEEEeCCCCe-eEEEEe---c-------CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEee
Q 006220 517 CNYIATGSSDKTVRLWDVSSGE-CVRIFI---G-------HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPL 585 (656)
Q Consensus 517 ~~~l~tgs~dg~V~iwd~~~~~-~~~~~~---~-------h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~ 585 (656)
|-.+.+ .++.+.+..-.... ..+.+. + +........++.+....+....++.+.+.+-...+. +
T Consensus 139 GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 139 GIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred CEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence 533333 34444444322211 111111 0 000000023444444555555555566444322211 1
Q ss_pred eCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220 586 MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 586 ~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
...+++..++.||+|+++|.-..+|.+.|.+..-.+.....
T Consensus 214 -~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~ 254 (410)
T PF04841_consen 214 -DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEF 254 (410)
T ss_pred -cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEe
Confidence 12468999999999999999999999999887655544433
No 362
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.00095 Score=72.01 Aligned_cols=94 Identities=18% Similarity=0.288 Sum_probs=78.9
Q ss_pred CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeE-EEEEcCCCCEEEEEECCCcEEEEeCCCCeeeE
Q 006220 505 LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMIL-SLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583 (656)
Q Consensus 505 ~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~-~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~ 583 (656)
...+.-+.|+|.-..+|++..+|.|.+..+. .+.+.++..|...++ +++|.|||+.||.|-.||+|++.|..++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3457889999999999999999999999887 777888877777777 99999999999999999999999999998877
Q ss_pred eee-CCCccEEEEEEcC
Q 006220 584 PLM-GHTSCVWTLAYSC 599 (656)
Q Consensus 584 ~~~-~h~~~V~~l~~s~ 599 (656)
... .....|.++.|++
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 642 2335677777763
No 363
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.28 E-value=0.16 Score=54.33 Aligned_cols=81 Identities=20% Similarity=0.271 Sum_probs=57.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEE--EEcCC----------------CC-EEEEE
Q 006220 547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTL--AYSCE----------------GS-LLASG 607 (656)
Q Consensus 547 ~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l--~~s~~----------------~~-~l~sg 607 (656)
...+.+|+.+|++++.|+...=|+|.++|+.++..+.-++|..+.=... ..... .. +++-+
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 3457889999999999998888999999999998887777655321110 00111 11 33445
Q ss_pred ECCCcEEEEeCCCCCceeec
Q 006220 608 SADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 608 s~Dg~I~iWd~~~~~~~~~~ 627 (656)
-.-|.|-||.++.+.++...
T Consensus 387 prRg~lEvW~~~~g~Rv~a~ 406 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAF 406 (415)
T ss_pred ccCCeEEEEecCCCCEEEEE
Confidence 67899999999998877543
No 364
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0012 Score=71.17 Aligned_cols=94 Identities=15% Similarity=0.167 Sum_probs=81.2
Q ss_pred ccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEE-EEEEecCCCEEEEEECCCcEEEEECCCCceeE
Q 006220 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVW-DVQFNPQGHYFASSSHDRTARIWSMDRIQPLR 499 (656)
Q Consensus 421 ~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~-~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~ 499 (656)
...|.-+.|+|.-..+|.+..+|.|.+..+. ++.+.++.-|+.++. +++|.|||+.+++|-.||+|++.|+.++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3567889999999999999999999999998 888999988888888 99999999999999999999999999987776
Q ss_pred Eec-CCCCCeeEEEEcC
Q 006220 500 IMA-GHLSDVDCVRWHI 515 (656)
Q Consensus 500 ~~~-~~~~~V~~v~~~p 515 (656)
.+. ....+|.++.|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 632 2346788888863
No 365
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.23 E-value=0.24 Score=53.77 Aligned_cols=192 Identities=17% Similarity=0.150 Sum_probs=110.7
Q ss_pred EEEEEEccCCCEEEEE-eCCC----eEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCC-----------cE
Q 006220 424 VYSASFSPLGDFILSS-SADT----TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDR-----------TA 487 (656)
Q Consensus 424 V~~l~~spd~~~L~s~-s~Dg----~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg-----------~i 487 (656)
+...++||+|++++.+ +..| +|+++|+.+++.+...-. ......+.|.+++..|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 4467899999987744 3333 599999999866543211 11122399999988877765333 37
Q ss_pred EEEECCCCcee--EEecCCCCC--eeEEEEcCCCCEEEEEECC----CcEEEEeCCCC----eeEEEEecCCCCe-EEEE
Q 006220 488 RIWSMDRIQPL--RIMAGHLSD--VDCVRWHINCNYIATGSSD----KTVRLWDVSSG----ECVRIFIGHRSMI-LSLA 554 (656)
Q Consensus 488 ~lwd~~~~~~~--~~~~~~~~~--V~~v~~~p~~~~l~tgs~d----g~V~iwd~~~~----~~~~~~~~h~~~i-~~l~ 554 (656)
+.|.+.+...- ..+...... ...+..++++++|+..+.. ..+++.|+..+ .....+......+ ..+.
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 88888776543 555544433 4678889999998764432 34888888875 2333333333333 3343
Q ss_pred EcCCCCEEEEE---ECCCcEEEEeCCCCee---eEeeeCCCc--cEEEEEEcCCCCEE-EEEECCC--cEEEEeCC
Q 006220 555 MSPDGRYMASG---DEDGTIMMWDLASGRC---VTPLMGHTS--CVWTLAYSCEGSLL-ASGSADC--TVKLWDVT 619 (656)
Q Consensus 555 ~sp~g~~L~s~---~~dg~I~iwD~~~~~~---~~~~~~h~~--~V~~l~~s~~~~~l-~sgs~Dg--~I~iWd~~ 619 (656)
.. .+.+++.. ...+.|.-.++..... ...+..|.. .+..+.. .+.+| ++.-.++ .|++|++.
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECC
Confidence 33 44444433 2346777778876652 224445554 4545544 34444 4444444 58899998
No 366
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.22 E-value=0.028 Score=63.47 Aligned_cols=180 Identities=14% Similarity=0.093 Sum_probs=104.8
Q ss_pred cCEEEEEEccCCCEEEEEe------CCC--eEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECC---------
Q 006220 422 GPVYSASFSPLGDFILSSS------ADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD--------- 484 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~s~s------~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D--------- 484 (656)
..+.+.+++|+|+.++... .|+ .|.+++.. +.......+. ..+.-.|+|+|..+++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence 4577889999999876554 244 45555542 2222222332 37788999998888777533
Q ss_pred ---CcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEE---EeCCCCeeEEE-----E-ecCCCCeEE
Q 006220 485 ---RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRL---WDVSSGECVRI-----F-IGHRSMILS 552 (656)
Q Consensus 485 ---g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~i---wd~~~~~~~~~-----~-~~h~~~i~~ 552 (656)
+.+.+.+++.+.... .....|..+.|+|+|..++... +|.|++ -....|. .+. + .+-...+.+
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVS 501 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEeecccCCcccc
Confidence 222222343332222 2245799999999999998766 577777 4433443 221 2 223334688
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCC-CeeeEeeeC--CCccEEEEEEcCCCCEEEEEECCCc
Q 006220 553 LAMSPDGRYMASGDEDGTIMMWDLAS-GRCVTPLMG--HTSCVWTLAYSCEGSLLASGSADCT 612 (656)
Q Consensus 553 l~~sp~g~~L~s~~~dg~I~iwD~~~-~~~~~~~~~--h~~~V~~l~~s~~~~~l~sgs~Dg~ 612 (656)
+.|.+++.++ ++..++...+|.+.- |.....+.+ ...++.+++-++. .++....+|.
T Consensus 502 l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~ 561 (591)
T PRK13616 502 LDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAV 561 (591)
T ss_pred ceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCce
Confidence 9999998855 555555555565432 222222233 2467777777763 4555566663
No 367
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.22 E-value=0.001 Score=43.91 Aligned_cols=39 Identities=49% Similarity=0.744 Sum_probs=34.6
Q ss_pred CeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617 (656)
Q Consensus 579 ~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd 617 (656)
++++..+..|...|.++.|++++..+++++.||.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355667778889999999999999999999999999996
No 368
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.0036 Score=71.47 Aligned_cols=103 Identities=20% Similarity=0.262 Sum_probs=76.9
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccCCCEEEEEe
Q 006220 361 QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPLGDFILSSS 440 (656)
Q Consensus 361 ~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s 440 (656)
-.+..+|.|++.|.|-..|+.+.-. ....-..-.++|++++|+.+|+.++.|-
T Consensus 97 ~~~~~ivi~Ts~ghvl~~d~~~nL~---------------------------~~~~ne~v~~~Vtsvafn~dg~~l~~G~ 149 (1206)
T KOG2079|consen 97 IVVVPIVIGTSHGHVLLSDMTGNLG---------------------------PLHQNERVQGPVTSVAFNQDGSLLLAGL 149 (1206)
T ss_pred eeeeeEEEEcCchhhhhhhhhcccc---------------------------hhhcCCccCCcceeeEecCCCceecccc
Confidence 3567899999999998888764100 0011112358999999999999999999
Q ss_pred CCCeEEEEeccCCceeEEeeCCCccEEEEE---EecCCCEEEEEECCCcEEEEEC
Q 006220 441 ADTTIRLWSTKLNANLVCYKGHNYPVWDVQ---FNPQGHYFASSSHDRTARIWSM 492 (656)
Q Consensus 441 ~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~---~sp~~~~l~sgs~Dg~i~lwd~ 492 (656)
.+|.|.+||+.++..++.+..|..|..++- +..++..++++...|. +|.+
T Consensus 150 ~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 150 GDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 999999999999999888887777765554 4446667888877776 5654
No 369
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.21 E-value=0.0011 Score=43.63 Aligned_cols=39 Identities=49% Similarity=0.969 Sum_probs=34.8
Q ss_pred CeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220 537 GECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWD 575 (656)
Q Consensus 537 ~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD 575 (656)
+++...+..|...|.++.|++++.++++++.||.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677778999999999999999999999999999996
No 370
>PRK10115 protease 2; Provisional
Probab=97.21 E-value=0.7 Score=53.59 Aligned_cols=236 Identities=12% Similarity=0.070 Sum_probs=120.4
Q ss_pred eEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEE
Q 006220 354 LNCASISQDGSLVAGGFSDS-----SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSAS 428 (656)
Q Consensus 354 V~~l~fs~dg~~La~g~~dg-----~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 428 (656)
+..+.+||||++||.+...+ .|++-|+.++... ...+. .. -..++
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l---------------------------~~~i~-~~--~~~~~ 178 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY---------------------------PELLD-NV--EPSFV 178 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC---------------------------Ccccc-Cc--ceEEE
Confidence 67788999999999875432 3666666531100 00000 11 14589
Q ss_pred EccCCCEEEEEeCC------CeEEEEeccCC--ceeEEeeCCCccEE-EEEEecCCCEEEEEE---CCCcEEEEECC--C
Q 006220 429 FSPLGDFILSSSAD------TTIRLWSTKLN--ANLVCYKGHNYPVW-DVQFNPQGHYFASSS---HDRTARIWSMD--R 494 (656)
Q Consensus 429 ~spd~~~L~s~s~D------g~I~lwd~~~~--~~~~~~~~h~~~V~-~l~~sp~~~~l~sgs---~Dg~i~lwd~~--~ 494 (656)
|++|++.|+.+..+ ..|+.+++.++ +....+.......+ .+..+.++.+++..+ .++.+.+|+.+ .
T Consensus 179 w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~ 258 (686)
T PRK10115 179 WANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELAD 258 (686)
T ss_pred EeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCC
Confidence 99999876655432 36778888877 33445554333444 333344777765554 34578888853 2
Q ss_pred CceeEEecCCCCCeeEEEEcCCCCEEEEEECC----CcEEEEeCCCCeeEEEEecC-C-CCeEEEEEcCCCCEEEEEECC
Q 006220 495 IQPLRIMAGHLSDVDCVRWHINCNYIATGSSD----KTVRLWDVSSGECVRIFIGH-R-SMILSLAMSPDGRYMASGDED 568 (656)
Q Consensus 495 ~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d----g~V~iwd~~~~~~~~~~~~h-~-~~i~~l~~sp~g~~L~s~~~d 568 (656)
+.+...+. +...+..-..+.. ..++.-+.. ..|...++.+......+..+ . ..|..+.++ .+.++++...+
T Consensus 259 ~~~~~~~~-~~~~~~~~~~~~~-~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~ 335 (686)
T PRK10115 259 AEPFVFLP-RRKDHEYSLDHYQ-HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQR 335 (686)
T ss_pred CCceEEEE-CCCCCEEEEEeCC-CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeC
Confidence 33322222 2222222122333 333333322 23444455421222334444 3 367778877 33455566667
Q ss_pred CcEEEEeCCC-CeeeEeee-CCCccEEEEEEc--CCC-CEEEEEEC---CCcEEEEeCCCCC
Q 006220 569 GTIMMWDLAS-GRCVTPLM-GHTSCVWTLAYS--CEG-SLLASGSA---DCTVKLWDVTTST 622 (656)
Q Consensus 569 g~I~iwD~~~-~~~~~~~~-~h~~~V~~l~~s--~~~-~~l~sgs~---Dg~I~iWd~~~~~ 622 (656)
|.-+++-+.. +..+..+. .....+..+.++ +++ .++++.++ -+.+..+|+.+++
T Consensus 336 g~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 336 GLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CEEEEEEEcCCCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 7655554432 23344433 222233334444 333 34544443 3678888887754
No 371
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.11 E-value=0.18 Score=58.60 Aligned_cols=197 Identities=11% Similarity=0.090 Sum_probs=122.4
Q ss_pred CCEEEEEeCCCeEEEEeccCCceeEEeeCCCcc--------EEEEEEec----------------CCCEEEEEECCCcEE
Q 006220 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHNYP--------VWDVQFNP----------------QGHYFASSSHDRTAR 488 (656)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~--------V~~l~~sp----------------~~~~l~sgs~Dg~i~ 488 (656)
+..++.|+.++.|.-.|..+++.+-.+...... ...+.+.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456777777888888888888877766532210 12233321 234788889999999
Q ss_pred EEECCCCceeEEecCCCCCee-------------EEEEcC--CCCEEEEEEC----------CCcEEEEeCCCCeeEEEE
Q 006220 489 IWSMDRIQPLRIMAGHLSDVD-------------CVRWHI--NCNYIATGSS----------DKTVRLWDVSSGECVRIF 543 (656)
Q Consensus 489 lwd~~~~~~~~~~~~~~~~V~-------------~v~~~p--~~~~l~tgs~----------dg~V~iwd~~~~~~~~~~ 543 (656)
-.|.++++....+.. .+.|. .+.-.| .+..+++|+. +|.|+-+|.++|+.+..+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998876642 12111 111112 2345666643 688999999999998776
Q ss_pred ecC---------CC--------Ce-EEEEEcCCCCEEEEEE------------------CCCcEEEEeCCCCeeeEeeeC
Q 006220 544 IGH---------RS--------MI-LSLAMSPDGRYMASGD------------------EDGTIMMWDLASGRCVTPLMG 587 (656)
Q Consensus 544 ~~h---------~~--------~i-~~l~~sp~g~~L~s~~------------------~dg~I~iwD~~~~~~~~~~~~ 587 (656)
..- .+ .+ ..+++.+....++.+. ..++|.-.|..+|+..-.++.
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 421 00 01 2234455444443322 234577778888888776654
Q ss_pred CCccEEE---------EEEcC-CCC---EEEEEECCCcEEEEeCCCCCceeecccc
Q 006220 588 HTSCVWT---------LAYSC-EGS---LLASGSADCTVKLWDVTTSTKVLKTEEK 630 (656)
Q Consensus 588 h~~~V~~---------l~~s~-~~~---~l~sgs~Dg~I~iWd~~~~~~~~~~~~~ 630 (656)
....++. +.+.. +|+ .++.++.+|.+.+.|-.+++.+...++.
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e~ 488 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEEV 488 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeeceee
Confidence 2111121 22322 553 7899999999999999999998876654
No 372
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.09 E-value=0.018 Score=64.91 Aligned_cols=148 Identities=16% Similarity=0.226 Sum_probs=90.2
Q ss_pred ccEEEEEEecCCCEEEEEE------CCC--cEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECC---------
Q 006220 464 YPVWDVQFNPQGHYFASSS------HDR--TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD--------- 526 (656)
Q Consensus 464 ~~V~~l~~sp~~~~l~sgs------~Dg--~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d--------- 526 (656)
..+.+.+++|+|..++... .|. .+.+++... .......+. ..+.-.|+|+|..|++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence 4577899999999887765 244 444445422 222233332 37888999999888777533
Q ss_pred ---CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEE---EeCCCCe-ee---Eeee-CCCccEEEE
Q 006220 527 ---KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMM---WDLASGR-CV---TPLM-GHTSCVWTL 595 (656)
Q Consensus 527 ---g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~i---wD~~~~~-~~---~~~~-~h~~~V~~l 595 (656)
+.+.+.++..+.... ...+.|..+.|||||..|+... +|.|.+ -....|. .+ ..+. +-...+.++
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 223333443333222 2346799999999999888766 477777 4444453 11 1111 222346889
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCC
Q 006220 596 AYSCEGSLLASGSADCTVKLWDVT 619 (656)
Q Consensus 596 ~~s~~~~~l~sgs~Dg~I~iWd~~ 619 (656)
.|..++.++ .+..++.-.+|.+.
T Consensus 503 ~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 503 DWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred eEecCCEEE-EEecCCCCceEEEe
Confidence 999998855 55555555566654
No 373
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.05 E-value=0.2 Score=51.64 Aligned_cols=153 Identities=13% Similarity=0.110 Sum_probs=95.7
Q ss_pred CEEEEEeCCCeEEEEeccC-CceeEE----eeCCCccE-EEEEEecCCCEEEEEECCCcEEEEECCCCcee--EEecC--
Q 006220 434 DFILSSSADTTIRLWSTKL-NANLVC----YKGHNYPV-WDVQFNPQGHYFASSSHDRTARIWSMDRIQPL--RIMAG-- 503 (656)
Q Consensus 434 ~~L~s~s~Dg~I~lwd~~~-~~~~~~----~~~h~~~V-~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~--~~~~~-- 503 (656)
+.+.+-|.||++.-..++. |+.... +..-..++ ..-.+...+..++--+.+|.|+--|+...... ..+..
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t 227 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT 227 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence 4577888899998888873 433321 11112222 23345555666666788999999888765432 11110
Q ss_pred --------CCCCeeEEEEcCCCCEEEEEEC---C-------CcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCC-EEEE
Q 006220 504 --------HLSDVDCVRWHINCNYIATGSS---D-------KTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR-YMAS 564 (656)
Q Consensus 504 --------~~~~V~~v~~~p~~~~l~tgs~---d-------g~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~-~L~s 564 (656)
..+.-.-+++|+..+.|++.-. + ..|.++|+.+++.++.+.. ..++.+|..+.+.+ +|++
T Consensus 228 ~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~ 306 (342)
T PF06433_consen 228 DAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYA 306 (342)
T ss_dssp HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEE
T ss_pred ccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEE
Confidence 1123345788876666655321 1 2588899999999998874 24688999998776 5655
Q ss_pred E-ECCCcEEEEeCCCCeeeEeeeC
Q 006220 565 G-DEDGTIMMWDLASGRCVTPLMG 587 (656)
Q Consensus 565 ~-~~dg~I~iwD~~~~~~~~~~~~ 587 (656)
. ..++.+.+||..+|+.+.++..
T Consensus 307 ~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 307 LSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EETTTTEEEEEETTT--EEEEE--
T ss_pred EcCCCCeEEEEeCcCCcEEeehhc
Confidence 4 4578999999999999988864
No 374
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.02 E-value=0.014 Score=66.79 Aligned_cols=140 Identities=16% Similarity=0.168 Sum_probs=98.7
Q ss_pred CCEEEEE-ECCCcEEEEECCCCceeEEecCCCCC-eeEEEEcCC-------CCEEEEEECCCcEEEEeCCCCe--eEEE-
Q 006220 475 GHYFASS-SHDRTARIWSMDRIQPLRIMAGHLSD-VDCVRWHIN-------CNYIATGSSDKTVRLWDVSSGE--CVRI- 542 (656)
Q Consensus 475 ~~~l~sg-s~Dg~i~lwd~~~~~~~~~~~~~~~~-V~~v~~~p~-------~~~l~tgs~dg~V~iwd~~~~~--~~~~- 542 (656)
.++++.. .....++-.|++.++.+..+..|... |..+ .|+ ....++|-.+..+..||.|-.. ++..
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~ 570 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ 570 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeecc
Confidence 3444433 35678999999999999999877543 4444 343 3456778889999999998642 3321
Q ss_pred Ee--cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeE-eeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 543 FI--GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT-PLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619 (656)
Q Consensus 543 ~~--~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~-~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~ 619 (656)
.. ......+|++-+.+| +||+|+.+|.|++||- .|+.-+ .+.+-..+|.+|+.+.||++|++.+ +..+.+++..
T Consensus 571 ~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred ccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 10 133467788777665 8999999999999994 444333 3446678999999999999988666 5577788864
No 375
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.98 E-value=0.17 Score=52.29 Aligned_cols=194 Identities=15% Similarity=0.130 Sum_probs=119.0
Q ss_pred EEccCCCE-EEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecC---
Q 006220 428 SFSPLGDF-ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG--- 503 (656)
Q Consensus 428 ~~spd~~~-L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~--- 503 (656)
.|.++... +.+--..+.|.-|+..++.... +. +...+.++..-..+..|+++.. -+++++.+++..+..+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV-FP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC
Confidence 47777764 4455567889999987664332 22 2223344444444445555533 356677665554333321
Q ss_pred --CCCCeeEEEEcCCCCEEEEEEC-----------CCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEEC-CC
Q 006220 504 --HLSDVDCVRWHINCNYIATGSS-----------DKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDE-DG 569 (656)
Q Consensus 504 --~~~~V~~v~~~p~~~~l~tgs~-----------dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~-dg 569 (656)
.....+.+...|+|.+.++... -|.|+.+|. .+..++.+..+-..-+.|+||||++.|+.+.. .+
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~ 185 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN 185 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence 1244567788899887766443 133444443 57777777766666788999999988887765 47
Q ss_pred cEEEEeCCC--C----e-eeEeeeCCCccEEEEEEcCCCCEEEEEECCC-cEEEEeCCCCCceeec
Q 006220 570 TIMMWDLAS--G----R-CVTPLMGHTSCVWTLAYSCEGSLLASGSADC-TVKLWDVTTSTKVLKT 627 (656)
Q Consensus 570 ~I~iwD~~~--~----~-~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg-~I~iWd~~~~~~~~~~ 627 (656)
.|.-|++.. + + ....+....+..-.++...+|.+.+++..+| .|.+|+.. ++.+...
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i 250 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEI 250 (307)
T ss_pred eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEE
Confidence 788887752 1 1 1122223345566778888888886555554 89999988 6665544
No 376
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.95 E-value=0.44 Score=50.02 Aligned_cols=237 Identities=16% Similarity=0.137 Sum_probs=120.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEccC
Q 006220 353 GLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSPL 432 (656)
Q Consensus 353 ~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 432 (656)
.-+.|+|.|||+++++ ...|.|++++............ .............++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~----------------------~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADL----------------------PEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-----------------------TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceeccc----------------------ccccccccCCcccceeccc
Confidence 3578999999988775 4799999999332110000000 0112234567788999984
Q ss_pred ---CCEEEEEeC-C--------CeEEEEeccCC-------cee-EEeeC---CCccEEEEEEecCCCEEEEEECCC----
Q 006220 433 ---GDFILSSSA-D--------TTIRLWSTKLN-------ANL-VCYKG---HNYPVWDVQFNPQGHYFASSSHDR---- 485 (656)
Q Consensus 433 ---~~~L~s~s~-D--------g~I~lwd~~~~-------~~~-~~~~~---h~~~V~~l~~sp~~~~l~sgs~Dg---- 485 (656)
+.+|..... . ..|.-|..... +.+ ..... .......|.|.|+|.+.++.+..+
T Consensus 60 f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~ 139 (331)
T PF07995_consen 60 FASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDN 139 (331)
T ss_dssp CCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGG
T ss_pred cCCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCccc
Confidence 233333222 1 23444444433 111 11122 234456799999997766665432
Q ss_pred ---------cEEEEECCCCc------------eeEEec-CCCCCeeEEEEcCC-CCEEEEE-ECCCcEEEEeCCCC----
Q 006220 486 ---------TARIWSMDRIQ------------PLRIMA-GHLSDVDCVRWHIN-CNYIATG-SSDKTVRLWDVSSG---- 537 (656)
Q Consensus 486 ---------~i~lwd~~~~~------------~~~~~~-~~~~~V~~v~~~p~-~~~l~tg-s~dg~V~iwd~~~~---- 537 (656)
.|.-.+.+..- ....+. |+. ....++|+|. |.++++= +.++.=.|--+..|
T Consensus 140 ~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYG 218 (331)
T PF07995_consen 140 AQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYG 218 (331)
T ss_dssp GCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--
T ss_pred ccccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCC
Confidence 23223322110 011111 232 2457899998 5544431 22322223222211
Q ss_pred -------------------------eeEEEEecCCCCeEEEEEcC-------CCCEEEEEECCCcEEEEeCCCCeeeEee
Q 006220 538 -------------------------ECVRIFIGHRSMILSLAMSP-------DGRYMASGDEDGTIMMWDLASGRCVTPL 585 (656)
Q Consensus 538 -------------------------~~~~~~~~h~~~i~~l~~sp-------~g~~L~s~~~dg~I~iwD~~~~~~~~~~ 585 (656)
.++..+..| ..++.+.|.. .|.++++.-..+.|....+..+..+...
T Consensus 219 WP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~ 297 (331)
T PF07995_consen 219 WPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEE 297 (331)
T ss_dssp TTTBSSSCSTTSS-ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEE
T ss_pred CCCCcCCCCCCCCccccccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccce
Confidence 122333333 4566677764 4567777666778888888755433221
Q ss_pred ----eCCCccEEEEEEcCCCCEEEEEECCCcEE
Q 006220 586 ----MGHTSCVWTLAYSCEGSLLASGSADCTVK 614 (656)
Q Consensus 586 ----~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~ 614 (656)
......+..+++.|||.++++.+.+|.|.
T Consensus 298 ~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 298 EEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred EEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 23445899999999999999988888874
No 377
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.94 E-value=0.5 Score=47.09 Aligned_cols=182 Identities=12% Similarity=0.050 Sum_probs=117.1
Q ss_pred cCEEEEEEccCCCEEEEEeCCC--eEEEEeccCCceeEEeeCC-CccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 006220 422 GPVYSASFSPLGDFILSSSADT--TIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL 498 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~s~s~Dg--~I~lwd~~~~~~~~~~~~h-~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~ 498 (656)
.-..++.|..++.++-|.+.-| .|+.+|+.+++......-. ..---.+.... +..+...=.++.+.+||..+.+.+
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEE
Confidence 3456788877888888888766 6899999999876554422 22233444442 333333447899999999999888
Q ss_pred EEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCC-----CCeEEEEEcCCCCEEEEEECCCcEEE
Q 006220 499 RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-----SMILSLAMSPDGRYMASGDEDGTIMM 573 (656)
Q Consensus 499 ~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~-----~~i~~l~~sp~g~~L~s~~~dg~I~i 573 (656)
..+.- .+.=..++ .++..|+.+.....++++|..+.+.++.+.... ..++-+.|- +|...|-.-....|..
T Consensus 124 ~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~ 199 (264)
T PF05096_consen 124 GTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVR 199 (264)
T ss_dssp EEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEE
Confidence 88763 34445555 467778887777899999999888777665322 245567775 5666666666778888
Q ss_pred EeCCCCeeeEeeeC------------C---CccEEEEEEcCCCCEEEEEE
Q 006220 574 WDLASGRCVTPLMG------------H---TSCVWTLAYSCEGSLLASGS 608 (656)
Q Consensus 574 wD~~~~~~~~~~~~------------h---~~~V~~l~~s~~~~~l~sgs 608 (656)
.|..+|+.+..+.. + ..-.+.++|.|....|...|
T Consensus 200 Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 200 IDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 89999988876520 1 24578999998766554444
No 378
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.92 E-value=0.0011 Score=63.19 Aligned_cols=143 Identities=16% Similarity=0.124 Sum_probs=88.9
Q ss_pred EEEEECCCcEEEEECCCCcee-EEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC-eeEEEEecCCCCeEEEE-
Q 006220 478 FASSSHDRTARIWSMDRIQPL-RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLA- 554 (656)
Q Consensus 478 l~sgs~Dg~i~lwd~~~~~~~-~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~-~~~~~~~~h~~~i~~l~- 554 (656)
+...+.||.++-++++..+.. +.-.-+......+ .-+..+++|+.+|.|.+|..... .....+..-...|.++.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~---~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVV---TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcceeec---ccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 444566777777776543211 1111111111111 23457899999999999987621 11111222223333332
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCC-ccEEEEEEcCCCCEEEEE--ECCCcEEEEeCCCCCc
Q 006220 555 MSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHT-SCVWTLAYSCEGSLLASG--SADCTVKLWDVTTSTK 623 (656)
Q Consensus 555 ~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~sg--s~Dg~I~iWd~~~~~~ 623 (656)
--.++.+..+++.||.|+.|++..++.+.....|+ .++..+..+..+..++.+ |.|..++.|++..-..
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d 181 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKD 181 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhc
Confidence 22245688899999999999999998888877787 666666666677777777 7888888888876443
No 379
>PHA02713 hypothetical protein; Provisional
Probab=96.91 E-value=0.075 Score=59.98 Aligned_cols=187 Identities=10% Similarity=0.035 Sum_probs=96.4
Q ss_pred CCCEEEEEeCC------CeEEEEeccCCceeE--EeeCCCccEEEEEEecCCCEEEEEECCC-----cEEEEECCCCcee
Q 006220 432 LGDFILSSSAD------TTIRLWSTKLNANLV--CYKGHNYPVWDVQFNPQGHYFASSSHDR-----TARIWSMDRIQPL 498 (656)
Q Consensus 432 d~~~L~s~s~D------g~I~lwd~~~~~~~~--~~~~h~~~V~~l~~sp~~~~l~sgs~Dg-----~i~lwd~~~~~~~ 498 (656)
++...+.|+.+ ..+..||..++.-.. .+....... +++ .-+|...+.||.++ ++..||..+.+-.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 45666666643 347778876553211 111111111 122 22677778888754 4778888765322
Q ss_pred E--EecCCCCCeeEEEEcCCCCEEEEEECCC-----------------------cEEEEeCCCCeeEEEEecCCCCeEEE
Q 006220 499 R--IMAGHLSDVDCVRWHINCNYIATGSSDK-----------------------TVRLWDVSSGECVRIFIGHRSMILSL 553 (656)
Q Consensus 499 ~--~~~~~~~~V~~v~~~p~~~~l~tgs~dg-----------------------~V~iwd~~~~~~~~~~~~h~~~i~~l 553 (656)
. .+.........+. -++...+.|+.++ .|..||..+.+-...-.-.......-
T Consensus 381 ~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~ 458 (557)
T PHA02713 381 MLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPG 458 (557)
T ss_pred ECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCc
Confidence 2 1111111112222 2566667776542 47778887664332111111111111
Q ss_pred EEcCCCCEEEEEECC------CcEEEEeCCC---CeeeEeeeCCCccEEEEEEcCCCCEEEEEECCC--cEEEEeCCCCC
Q 006220 554 AMSPDGRYMASGDED------GTIMMWDLAS---GRCVTPLMGHTSCVWTLAYSCEGSLLASGSADC--TVKLWDVTTST 622 (656)
Q Consensus 554 ~~sp~g~~L~s~~~d------g~I~iwD~~~---~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg--~I~iWd~~~~~ 622 (656)
...-+|+..+.||.+ ..+..||..+ ...+..+.........+.+ +|.+.++||.|| ++-.||..+.+
T Consensus 459 ~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 459 VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 222346766777654 2467899876 3344444433333333333 688999999888 67777777765
Q ss_pred ce
Q 006220 623 KV 624 (656)
Q Consensus 623 ~~ 624 (656)
-.
T Consensus 537 W~ 538 (557)
T PHA02713 537 WN 538 (557)
T ss_pred cc
Confidence 43
No 380
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.90 E-value=0.038 Score=47.17 Aligned_cols=100 Identities=14% Similarity=0.090 Sum_probs=65.7
Q ss_pred eEEEEEcC---C-CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220 354 LNCASISQ---D-GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (656)
Q Consensus 354 V~~l~fs~---d-g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 429 (656)
|+++++.. | .+-|++|+.|..||||+-.. ......-++.|+++.-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------------------------------~~~Ei~e~~~v~~L~~ 50 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------------------------------IVAEITETDKVTSLCS 50 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------------------------------EEEEEecccceEEEEE
Confidence 55666543 3 25799999999999998442 1222234567778877
Q ss_pred ccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEec-C--C-CEEEEEECCCcEE
Q 006220 430 SPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNP-Q--G-HYFASSSHDRTAR 488 (656)
Q Consensus 430 spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp-~--~-~~l~sgs~Dg~i~ 488 (656)
... ..++.+..+|+|-+|+-. ..+...+.... +.++.+.. + | .-|++|-.+|.|-
T Consensus 51 ~~~-~~F~Y~l~NGTVGvY~~~--~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 51 LGG-GRFAYALANGTVGVYDRS--QRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cCC-CEEEEEecCCEEEEEeCc--ceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 765 568889999999999763 44455554333 55565544 2 2 2588888888763
No 381
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.018 Score=65.96 Aligned_cols=100 Identities=20% Similarity=0.286 Sum_probs=76.6
Q ss_pred CCEEEEEeCCCeEEEEeccCCce-eEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEE
Q 006220 433 GDFILSSSADTTIRLWSTKLNAN-LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCV 511 (656)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~-~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v 511 (656)
+..++.|+..|.|-..|+...-+ ...-....++|.+++|+.+|..++.|-.+|.|.+||+.++++.+.+..|..+++.+
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 55788899899999988875422 12222347899999999999999999999999999999999999988777776665
Q ss_pred EEc---CCCCEEEEEECCCcEEEEeC
Q 006220 512 RWH---INCNYIATGSSDKTVRLWDV 534 (656)
Q Consensus 512 ~~~---p~~~~l~tgs~dg~V~iwd~ 534 (656)
-++ ..+..++++...|. +|.+
T Consensus 179 i~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc--eEEE
Confidence 544 34456778777776 5544
No 382
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=96.86 E-value=0.0018 Score=42.75 Aligned_cols=31 Identities=23% Similarity=0.431 Sum_probs=28.2
Q ss_pred chHHHHHHHHHHHHhcCccHHHHHHHHHHhc
Q 006220 2 DELQVVEFVATYLKKKGFSEAENALQAEIQR 32 (656)
Q Consensus 2 ~~~~~~~~v~~yl~~~~~~~~e~~~~~e~~~ 32 (656)
...+++++|++||.+.||..|.+.|.+|++.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~ 32 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGL 32 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCC
Confidence 4578999999999999999999999999864
No 383
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.84 E-value=0.11 Score=44.38 Aligned_cols=100 Identities=20% Similarity=0.225 Sum_probs=68.1
Q ss_pred eeEEEEcC---C-CCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeE
Q 006220 508 VDCVRWHI---N-CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583 (656)
Q Consensus 508 V~~v~~~p---~-~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~ 583 (656)
|+++++.. + .+.|++||.|..||+|+ ....+..+. ....|++++-... ..++.+..+|+|-+|+- ...+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 55666553 2 26899999999999997 446666665 4467888877766 56888889999999985 33344
Q ss_pred eeeCCCccEEEEEEcC-C--C-CEEEEEECCCcEE
Q 006220 584 PLMGHTSCVWTLAYSC-E--G-SLLASGSADCTVK 614 (656)
Q Consensus 584 ~~~~h~~~V~~l~~s~-~--~-~~l~sgs~Dg~I~ 614 (656)
+.+... .+.++++.. + | .-|++|-.+|.|-
T Consensus 76 RiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 444322 355665533 2 2 3688888888874
No 384
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.82 E-value=0.64 Score=52.09 Aligned_cols=188 Identities=12% Similarity=0.136 Sum_probs=113.0
Q ss_pred CCeEEEEeccCCceeEEeeCC-------------------------------CccEE-EEEEecCCCEEEEEECC-----
Q 006220 442 DTTIRLWSTKLNANLVCYKGH-------------------------------NYPVW-DVQFNPQGHYFASSSHD----- 484 (656)
Q Consensus 442 Dg~I~lwd~~~~~~~~~~~~h-------------------------------~~~V~-~l~~sp~~~~l~sgs~D----- 484 (656)
+|.|..+|..+++.+-.+..- ...+| .+.+.|...+++.+..+
T Consensus 180 ~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~ 259 (527)
T TIGR03075 180 RGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWN 259 (527)
T ss_pred CcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCC
Confidence 678888888888776543221 11233 23666666666665422
Q ss_pred C-----------cEEEEECCCCceeEEecCCCCCe---------eEEEEcCCCC---EEEEEECCCcEEEEeCCCCeeEE
Q 006220 485 R-----------TARIWSMDRIQPLRIMAGHLSDV---------DCVRWHINCN---YIATGSSDKTVRLWDVSSGECVR 541 (656)
Q Consensus 485 g-----------~i~lwd~~~~~~~~~~~~~~~~V---------~~v~~~p~~~---~l~tgs~dg~V~iwd~~~~~~~~ 541 (656)
+ +|.-.|+++++..-.+.....++ .-+....+|+ .++.++.+|.+++.|.++|+.+.
T Consensus 260 ~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 260 SHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred CCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence 2 56777888888876665322222 2223334665 77889999999999999998862
Q ss_pred E--------Ee---c-CC-CC-----------------e-----------EEEEEcCCCCEEEEEECC------------
Q 006220 542 I--------FI---G-HR-SM-----------------I-----------LSLAMSPDGRYMASGDED------------ 568 (656)
Q Consensus 542 ~--------~~---~-h~-~~-----------------i-----------~~l~~sp~g~~L~s~~~d------------ 568 (656)
. +. . .. .+ + ..++++|+..+++....+
T Consensus 340 ~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~ 419 (527)
T TIGR03075 340 AEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSY 419 (527)
T ss_pred cccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEeccccccccccccccc
Confidence 1 10 0 00 00 0 115566665555443322
Q ss_pred ---------------------CcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220 569 ---------------------GTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 569 ---------------------g~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
|.|.-||+.+|+..-+.........+. ..-.+.+++.++.||.++.+|..+++.+.+.
T Consensus 420 ~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~ 498 (527)
T TIGR03075 420 KKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKF 498 (527)
T ss_pred CCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEE
Confidence 457777888887766554222111111 1124557778888999999999999998876
Q ss_pred ccc
Q 006220 628 EEK 630 (656)
Q Consensus 628 ~~~ 630 (656)
...
T Consensus 499 ~~g 501 (527)
T TIGR03075 499 KTG 501 (527)
T ss_pred eCC
Confidence 543
No 385
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.79 E-value=0.52 Score=49.57 Aligned_cols=182 Identities=12% Similarity=0.053 Sum_probs=93.5
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEe--cCCCEEEEEEC--------------------
Q 006220 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN--PQGHYFASSSH-------------------- 483 (656)
Q Consensus 426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~s--p~~~~l~sgs~-------------------- 483 (656)
...++|+++.++-.....+|+-.|+.+.+....+.....-+-...|. .++..++-.-.
T Consensus 85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a 164 (386)
T PF14583_consen 85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEA 164 (386)
T ss_dssp T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC
T ss_pred ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhh
Confidence 46677888888766666789999999988777776665555445564 34555433211
Q ss_pred --CCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCC-----cEEEEeCCC-CeeEEEEecCCC--CeEEE
Q 006220 484 --DRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDK-----TVRLWDVSS-GECVRIFIGHRS--MILSL 553 (656)
Q Consensus 484 --Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg-----~V~iwd~~~-~~~~~~~~~h~~--~i~~l 553 (656)
.+.|.-.|+.+++....+. ....+..+.|+|....+++=+..| .-|||-+++ |...+.+..+.. .+..=
T Consensus 165 ~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHE 243 (386)
T PF14583_consen 165 RPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHE 243 (386)
T ss_dssp ---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEE
T ss_pred CCCceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccc
Confidence 2345556777766555554 346678899999665555543332 236676543 333443333322 34445
Q ss_pred EEcCCCCEEEEEE-----CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECC
Q 006220 554 AMSPDGRYMASGD-----EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD 610 (656)
Q Consensus 554 ~~sp~g~~L~s~~-----~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~D 610 (656)
-|.|||..|.--+ .+..|.-+|..+++....... .....+--++||++++.=|.|
T Consensus 244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE--
T ss_pred cccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCC
Confidence 6899998665422 244577778887754322221 134456668899988765554
No 386
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.64 E-value=0.68 Score=49.19 Aligned_cols=179 Identities=16% Similarity=0.198 Sum_probs=88.8
Q ss_pred ccCCCEEEEEeC------CCeEEEEeccCCceeEEeeCC---CccEEEEEEecCCCEEEEEEC-----------------
Q 006220 430 SPLGDFILSSSA------DTTIRLWSTKLNANLVCYKGH---NYPVWDVQFNPQGHYFASSSH----------------- 483 (656)
Q Consensus 430 spd~~~L~s~s~------Dg~I~lwd~~~~~~~~~~~~h---~~~V~~l~~sp~~~~l~sgs~----------------- 483 (656)
-|+|+.++|+-. -|.+.+.|-++.......... ..--.++.|.|..+.++|...
T Consensus 138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~ 217 (461)
T PF05694_consen 138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA 217 (461)
T ss_dssp -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence 367777776533 256888888877776665542 233567888898888888653
Q ss_pred ---CCcEEEEECCCCceeEEecCCC--CCeeEEEEc--CCCCEEEEEE-CCCcEEEEeC-CCCee----EEEEec-----
Q 006220 484 ---DRTARIWSMDRIQPLRIMAGHL--SDVDCVRWH--INCNYIATGS-SDKTVRLWDV-SSGEC----VRIFIG----- 545 (656)
Q Consensus 484 ---Dg~i~lwd~~~~~~~~~~~~~~--~~V~~v~~~--p~~~~l~tgs-~dg~V~iwd~-~~~~~----~~~~~~----- 545 (656)
..++.+||+.+.+.++.+.-.. ..+..|.|. |+..+=++|+ -.++|..|-- ..++- +..+..
T Consensus 218 ~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 218 GKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp H-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred ccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence 4679999999999998887432 234566775 4455544443 3344544433 33321 111111
Q ss_pred -----C-------CCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCC---eeeEeee-C---------------CCccEE
Q 006220 546 -----H-------RSMILSLAMSPDGRYMASGD-EDGTIMMWDLASG---RCVTPLM-G---------------HTSCVW 593 (656)
Q Consensus 546 -----h-------~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~~~~---~~~~~~~-~---------------h~~~V~ 593 (656)
. ..-|+.|.+|.|.++|..+. .+|.|+.||+..- +++.++. + -.+...
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPq 377 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQ 377 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S---
T ss_pred ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCC
Confidence 0 24578999999999988765 7899999999653 2332221 1 113346
Q ss_pred EEEEcCCCCEEEEEE
Q 006220 594 TLAYSCEGSLLASGS 608 (656)
Q Consensus 594 ~l~~s~~~~~l~sgs 608 (656)
-+..|.||+.|...+
T Consensus 378 MvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 378 MVQLSLDGKRLYVTN 392 (461)
T ss_dssp -EEE-TTSSEEEEE-
T ss_pred eEEEccCCeEEEEEe
Confidence 788899998876654
No 387
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=0.085 Score=56.33 Aligned_cols=142 Identities=14% Similarity=0.177 Sum_probs=99.3
Q ss_pred CCCE-EEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCC-------EEEEEECCCcEEEEeCCCC-e-eEEEE
Q 006220 474 QGHY-FASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCN-------YIATGSSDKTVRLWDVSSG-E-CVRIF 543 (656)
Q Consensus 474 ~~~~-l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~-------~l~tgs~dg~V~iwd~~~~-~-~~~~~ 543 (656)
+.++ +.++.....++-.|++.++.+....-+.. |+-+.+.|+.. .-+.|-+|..|.-||.|-. . .+..-
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 3344 44555667789999999999998886654 77788877553 2345778889999999833 2 22222
Q ss_pred ecCC----CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeE-eeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220 544 IGHR----SMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT-PLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDV 618 (656)
Q Consensus 544 ~~h~----~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~-~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~ 618 (656)
.+|. ....|.+-..+ .+|++|+.+|.|++||- .+...+ .+.+-..+|..+..+.+|++|++.+ +..+.+-++
T Consensus 423 q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eccccccccccceeeecCC-ceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 3332 23555555444 48999999999999996 554443 4567778999999999999887555 556777665
Q ss_pred C
Q 006220 619 T 619 (656)
Q Consensus 619 ~ 619 (656)
.
T Consensus 500 ~ 500 (644)
T KOG2395|consen 500 L 500 (644)
T ss_pred e
Confidence 4
No 388
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.59 E-value=0.42 Score=47.86 Aligned_cols=167 Identities=12% Similarity=0.169 Sum_probs=114.4
Q ss_pred cCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCC-CccEEEEEEecCCCEEEEEECCCcEEEEECCCCce
Q 006220 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH-NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP 497 (656)
Q Consensus 419 ~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h-~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~ 497 (656)
|-...|.++.|+|+.+.|++......-.||=...|..+.++.-. -...-.|.|..+|.+.++--.++.+.++.++....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 44455999999999999999888888888877778888776531 22334688888887777777889999988765432
Q ss_pred eEE----------ecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee---EEEEecCC-------CCeEEEEEcC
Q 006220 498 LRI----------MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC---VRIFIGHR-------SMILSLAMSP 557 (656)
Q Consensus 498 ~~~----------~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~---~~~~~~h~-------~~i~~l~~sp 557 (656)
+.. ..........++|.|....|+.+-.-.-+.||.+..+.. +.....+. ..|+.+.|.+
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~ 242 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA 242 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence 211 111145578899999999999988888888887764331 11111111 2467788886
Q ss_pred -CCCEEEEEECCCcEEEEeCCCCeeeEeee
Q 006220 558 -DGRYMASGDEDGTIMMWDLASGRCVTPLM 586 (656)
Q Consensus 558 -~g~~L~s~~~dg~I~iwD~~~~~~~~~~~ 586 (656)
.+.+|+-+.+++.+.-.|. .|..+..+.
T Consensus 243 ~~~~LLVLS~ESr~l~Evd~-~G~~~~~ls 271 (316)
T COG3204 243 ITNSLLVLSDESRRLLEVDL-SGEVIELLS 271 (316)
T ss_pred CCCcEEEEecCCceEEEEec-CCCeeeeEE
Confidence 4567777888888888886 455555443
No 389
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.52 E-value=0.98 Score=48.22 Aligned_cols=146 Identities=10% Similarity=0.098 Sum_probs=79.9
Q ss_pred CCeEEEEEcCCCCEEEEEeC-----------CC-cEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeec
Q 006220 352 NGLNCASISQDGSLVAGGFS-----------DS-SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG 419 (656)
Q Consensus 352 ~~V~~l~fs~dg~~La~g~~-----------dg-~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 419 (656)
.....++|.++|+++++-.. .+ .|.+++-... ++.......+..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dg------------------------dG~~d~~~vfa~ 69 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADG------------------------DGKYDKSNVFAE 69 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCC------------------------CCCcceeEEeec
Confidence 34678899999998877531 22 5555543210 011112223333
Q ss_pred CccCEEEEEEccCCCEEEEEeCCCeEEEEeccCC-----ceeEE---eeC----CCccEEEEEEecCCCEEEEEECC---
Q 006220 420 HSGPVYSASFSPLGDFILSSSADTTIRLWSTKLN-----ANLVC---YKG----HNYPVWDVQFNPQGHYFASSSHD--- 484 (656)
Q Consensus 420 h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~-----~~~~~---~~~----h~~~V~~l~~sp~~~~l~sgs~D--- 484 (656)
.-....++++.+++ |++++.....++.+.... +.... +.. +......+.|.|+|.+.++.+..
T Consensus 70 ~l~~p~Gi~~~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~ 147 (367)
T TIGR02604 70 ELSMVTGLAVAVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLAS 147 (367)
T ss_pred CCCCccceeEecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCc
Confidence 33456788998888 444444433334454321 11111 211 13447789999999876655421
Q ss_pred ----------------CcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEE
Q 006220 485 ----------------RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS 524 (656)
Q Consensus 485 ----------------g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs 524 (656)
|.+.-++.+..+. ..+.........++|+|+|+.+++-.
T Consensus 148 ~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 148 KVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred eeccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence 4455556555443 33333334567899999998877644
No 390
>PHA03098 kelch-like protein; Provisional
Probab=96.50 E-value=0.13 Score=58.07 Aligned_cols=185 Identities=11% Similarity=0.058 Sum_probs=87.5
Q ss_pred CCCEEEEEeCCC------eEEEEeccCCceeEEe--eCCCccEEEEEEecCCCEEEEEECC-----CcEEEEECCCCcee
Q 006220 432 LGDFILSSSADT------TIRLWSTKLNANLVCY--KGHNYPVWDVQFNPQGHYFASSSHD-----RTARIWSMDRIQPL 498 (656)
Q Consensus 432 d~~~L~s~s~Dg------~I~lwd~~~~~~~~~~--~~h~~~V~~l~~sp~~~~l~sgs~D-----g~i~lwd~~~~~~~ 498 (656)
++..++.|+.++ .+..||..+++-...- ....... +++ .-++..++.||.+ ..+..||..+.+-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVT-VFNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEE-EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 355566665432 4677787655432211 1011111 122 2257777888765 34667887665422
Q ss_pred EEecCCCCC-eeEEEEcCCCCEEEEEECC------CcEEEEeCCCCeeEEEEecCCCC-eEEEEEcCCCCEEEEEECC--
Q 006220 499 RIMAGHLSD-VDCVRWHINCNYIATGSSD------KTVRLWDVSSGECVRIFIGHRSM-ILSLAMSPDGRYMASGDED-- 568 (656)
Q Consensus 499 ~~~~~~~~~-V~~v~~~p~~~~l~tgs~d------g~V~iwd~~~~~~~~~~~~h~~~-i~~l~~sp~g~~L~s~~~d-- 568 (656)
..-...... -.+++ .-++...+.|+.+ ..+..||..+++-...-...... -.++ ...++..++.||.+
T Consensus 372 ~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~ 449 (534)
T PHA03098 372 EEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA-IYHDGKIYVIGGISYI 449 (534)
T ss_pred eCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE-EEECCEEEEECCccCC
Confidence 211100011 11122 2355666666632 45888998776433211100010 1122 22356666666543
Q ss_pred ------CcEEEEeCCCCeee--EeeeCCCccEEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCC
Q 006220 569 ------GTIMMWDLASGRCV--TPLMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTST 622 (656)
Q Consensus 569 ------g~I~iwD~~~~~~~--~~~~~h~~~V~~l~~s~~~~~l~sgs~D-----g~I~iWd~~~~~ 622 (656)
..+.+||..+++-. ..+.........+.+ ++.+++.||.+ +.|.++|..+..
T Consensus 450 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 23888898765432 222111111112222 67777777754 467778776643
No 391
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.40 E-value=1.3 Score=44.78 Aligned_cols=224 Identities=16% Similarity=0.224 Sum_probs=126.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEee-----cCccCEEEEE
Q 006220 354 LNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ-----GHSGPVYSAS 428 (656)
Q Consensus 354 V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~h~~~V~~l~ 428 (656)
-+.++|+|.+.+-++....+...+||.......... ........ ...+..+.+.
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~---------------------~~L~vtiP~~~~~~~~~~PTGiV 83 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQ---------------------DPLVVVIPAPPPLAAEGTPTGQV 83 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCc---------------------cceEEEecCCCCCCCCCCccEEE
Confidence 477899999988888888899999998732111000 00001111 0123345555
Q ss_pred EccCCC------------EEEEEeCCCeEEEEeccCCce-----eEEee-CCCccE-EEEEEec--CCCEEEEEE-CCCc
Q 006220 429 FSPLGD------------FILSSSADTTIRLWSTKLNAN-----LVCYK-GHNYPV-WDVQFNP--QGHYFASSS-HDRT 486 (656)
Q Consensus 429 ~spd~~------------~L~s~s~Dg~I~lwd~~~~~~-----~~~~~-~h~~~V-~~l~~sp--~~~~l~sgs-~Dg~ 486 (656)
|+.... .++.+++||+|.-|...-... ...+. +....| ..+++.. .+.+|..+. ..++
T Consensus 84 fN~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~ 163 (336)
T TIGR03118 84 FNGSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGR 163 (336)
T ss_pred EeCCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCc
Confidence 553222 367889999999998532222 12222 112233 3455543 345555543 7789
Q ss_pred EEEEECCCCcee--EEecCC-----CCC-----------eeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec--C
Q 006220 487 ARIWSMDRIQPL--RIMAGH-----LSD-----------VDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG--H 546 (656)
Q Consensus 487 i~lwd~~~~~~~--~~~~~~-----~~~-----------V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~--h 546 (656)
|.++|-.-.+.. ..+... -.+ |+-..-.++.+.=+.|..-|.|-+||. .|..++.+.. .
T Consensus 164 IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~ 242 (336)
T TIGR03118 164 IDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGR 242 (336)
T ss_pred eEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCc
Confidence 999985432211 001100 000 111111222222233445578999996 5777777742 2
Q ss_pred CCCeEEEEEcC------CCCEEEEEECCCcEEEEeCCCCeeeEeeeCCC------ccEEEEEEcC
Q 006220 547 RSMILSLAMSP------DGRYMASGDEDGTIMMWDLASGRCVTPLMGHT------SCVWTLAYSC 599 (656)
Q Consensus 547 ~~~i~~l~~sp------~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~------~~V~~l~~s~ 599 (656)
-..-..|+..| .|.+|+--..||+|..||..+++.+..+.... ..+|.|+|..
T Consensus 243 LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 243 LNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred ccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 22345566655 57788888889999999999999888776533 3568888865
No 392
>PRK10115 protease 2; Provisional
Probab=96.37 E-value=2.1 Score=49.63 Aligned_cols=194 Identities=8% Similarity=0.000 Sum_probs=104.8
Q ss_pred cCEEEEEEccCCCEEEEEeC-----CCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECC------CcEEEE
Q 006220 422 GPVYSASFSPLGDFILSSSA-----DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHD------RTARIW 490 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~s~s~-----Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D------g~i~lw 490 (656)
-.+..+.|||++++|+.+.. ..+|++.|+.++..+...-... -..++|+++++.|+.+..+ ..|+.+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 34667889999998775433 2358899998776432211111 1459999999877666542 367778
Q ss_pred ECCCC--ceeEEecCCCCCeeEEEE-cCCCCEEEEEEC---CCcEEEEeCC--CCeeEEEEecCCCCeEEEEEcCCCCEE
Q 006220 491 SMDRI--QPLRIMAGHLSDVDCVRW-HINCNYIATGSS---DKTVRLWDVS--SGECVRIFIGHRSMILSLAMSPDGRYM 562 (656)
Q Consensus 491 d~~~~--~~~~~~~~~~~~V~~v~~-~p~~~~l~tgs~---dg~V~iwd~~--~~~~~~~~~~h~~~i~~l~~sp~g~~L 562 (656)
++.+. +....+...........+ +.++.+++..+. ++.+.+|+.. ++.....+.........+. +..+.++
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly 283 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFY 283 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEE
Confidence 88877 444455543333332233 347887765443 4578898853 3443222222222222222 2223333
Q ss_pred EEEE---CCCcEEEEeCCCCeeeEeeeCC-C-ccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 563 ASGD---EDGTIMMWDLASGRCVTPLMGH-T-SCVWTLAYSCEGSLLASGSADCTVKLWDVT 619 (656)
Q Consensus 563 ~s~~---~dg~I~iwD~~~~~~~~~~~~h-~-~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~ 619 (656)
+... ....|...++........+..+ . ..|..+.+. .+.++++...+|.-+++-+.
T Consensus 284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 3222 1223444455421122333344 2 368888887 34566666777775555544
No 393
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=0.052 Score=57.90 Aligned_cols=142 Identities=13% Similarity=0.174 Sum_probs=98.4
Q ss_pred CCCE-EEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCC-------EEEEEECCCcEEEEECCCCc--eeEEe
Q 006220 432 LGDF-ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGH-------YFASSSHDRTARIWSMDRIQ--PLRIM 501 (656)
Q Consensus 432 d~~~-L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~-------~l~sgs~Dg~i~lwd~~~~~--~~~~~ 501 (656)
+.++ |.++..-..++-.|+..|+.+...+-+.. |.-+.+.|+.. .-+.|-.|..|.-||.+-.. .+...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 3443 44566666788899999999988887765 77777777542 22445578889999987322 22222
Q ss_pred cCC----CCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220 502 AGH----LSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (656)
Q Consensus 502 ~~~----~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~ 576 (656)
.+| .....|.+-..+ .+|++||.+|.||+||--.......+.+-..+|..+..+.+|++|++.+ +..+.+.++
T Consensus 423 q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eccccccccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 222 234556655444 4899999999999999733333445677888999999999999988765 456777765
No 394
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.27 E-value=0.6 Score=52.33 Aligned_cols=190 Identities=13% Similarity=0.068 Sum_probs=118.3
Q ss_pred CCEEEEEeCCCeEEEEeccCCceeEEeeCCC-ccEE----------EEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 006220 433 GDFILSSSADTTIRLWSTKLNANLVCYKGHN-YPVW----------DVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (656)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~-~~V~----------~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~ 501 (656)
+..++.++.++.|.-.|..+++.+-.+.... ..+. .+++ .+..++.++.|+.+...|.++++.+-..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4566777778889999999988877664321 1111 1122 2356778888999999999999988665
Q ss_pred cCCCCC-eeEEEEcC--CCCEEEEEEC------CCcEEEEeCCCCeeEEEEecCCC------------------------
Q 006220 502 AGHLSD-VDCVRWHI--NCNYIATGSS------DKTVRLWDVSSGECVRIFIGHRS------------------------ 548 (656)
Q Consensus 502 ~~~~~~-V~~v~~~p--~~~~l~tgs~------dg~V~iwd~~~~~~~~~~~~h~~------------------------ 548 (656)
...... -..+.-+| .+..+++++. +|.|+-+|..+|+.+..+..-..
T Consensus 147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~ 226 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD 226 (527)
T ss_pred ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence 421100 00111112 1234555543 68999999999998866532111
Q ss_pred -------Ce-EEEEEcCCCCEEEEEECC-----C-----------cEEEEeCCCCeeeEeeeCCCccEEE---------E
Q 006220 549 -------MI-LSLAMSPDGRYMASGDED-----G-----------TIMMWDLASGRCVTPLMGHTSCVWT---------L 595 (656)
Q Consensus 549 -------~i-~~l~~sp~g~~L~s~~~d-----g-----------~I~iwD~~~~~~~~~~~~h~~~V~~---------l 595 (656)
.+ ..+++.|...+++.+... + +|.-.|+++|+..-.++.....++. +
T Consensus 227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~ 306 (527)
T TIGR03075 227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILF 306 (527)
T ss_pred ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEE
Confidence 01 124566666666655421 2 6777789999988776642222222 2
Q ss_pred EEcCCCC---EEEEEECCCcEEEEeCCCCCce
Q 006220 596 AYSCEGS---LLASGSADCTVKLWDVTTSTKV 624 (656)
Q Consensus 596 ~~s~~~~---~l~sgs~Dg~I~iWd~~~~~~~ 624 (656)
....+|+ .++.++.+|.+.+.|-.+++.+
T Consensus 307 d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 307 DLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 2334665 7889999999999999999875
No 395
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.22 E-value=0.014 Score=55.85 Aligned_cols=105 Identities=17% Similarity=0.170 Sum_probs=69.7
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEE-EEEccCCCEEEEEeC
Q 006220 363 GSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYS-ASFSPLGDFILSSSA 441 (656)
Q Consensus 363 g~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~-l~~spd~~~L~s~s~ 441 (656)
+.-+++|+.+|.|.+|++...+.. ......-...|.+ +.--.++.+.++++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~---------------------------~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~ 122 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAH---------------------------SDRVCSGEESIDLGIPNGRDSSLGCVGAQ 122 (238)
T ss_pred CceEEeecccceEEEecCCccchH---------------------------HHhhhcccccceeccccccccceeEEecc
Confidence 556889999999999997631110 0001111122222 222334557889999
Q ss_pred CCeEEEEeccCCceeEEeeCCC-ccEEEEEEecCCCEEEEE--ECCCcEEEEECCC
Q 006220 442 DTTIRLWSTKLNANLVCYKGHN-YPVWDVQFNPQGHYFASS--SHDRTARIWSMDR 494 (656)
Q Consensus 442 Dg~I~lwd~~~~~~~~~~~~h~-~~V~~l~~sp~~~~l~sg--s~Dg~i~lwd~~~ 494 (656)
||.|+.|++.-++.+.....|+ .++.....+..+..++++ |.|..++.|++..
T Consensus 123 dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 123 DGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 9999999999887777666677 566666666666777777 7778888887764
No 396
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.20 E-value=0.87 Score=46.22 Aligned_cols=144 Identities=13% Similarity=0.165 Sum_probs=91.5
Q ss_pred CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe----------
Q 006220 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM---------- 501 (656)
Q Consensus 432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~---------- 501 (656)
.++.|+.|+.+| +.+++........... +..+|..+...|+-+.+++-+ |+.++++++.........
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 478899999988 9999983333332222 233499999999877776665 599999998765443311
Q ss_pred ----cCCCCCeeEEE--EcCCCCEEEEEECCCcEEEEeCCCC-----eeEEEEecCCCCeEEEEEcCCCCEEEEEECCCc
Q 006220 502 ----AGHLSDVDCVR--WHINCNYIATGSSDKTVRLWDVSSG-----ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGT 570 (656)
Q Consensus 502 ----~~~~~~V~~v~--~~p~~~~l~tgs~dg~V~iwd~~~~-----~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~ 570 (656)
......+..++ -.+.+...++....+.|.+|..... ...+.+. -...+.+++|. ++.|+.|..++
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~~- 158 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSKG- 158 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCCc-
Confidence 11223344444 1133444444445568888877653 3455554 34778899998 66777777554
Q ss_pred EEEEeCCCCeee
Q 006220 571 IMMWDLASGRCV 582 (656)
Q Consensus 571 I~iwD~~~~~~~ 582 (656)
..+.|+.++...
T Consensus 159 f~~idl~~~~~~ 170 (275)
T PF00780_consen 159 FYLIDLNTGSPS 170 (275)
T ss_pred eEEEecCCCCce
Confidence 778899876543
No 397
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.19 E-value=0.36 Score=54.58 Aligned_cols=190 Identities=18% Similarity=0.212 Sum_probs=99.6
Q ss_pred EEEEccCCCEEEEEeCC------CeEEEEeccCCceeE--EeeCCCccEEEEEEecCCCEEEEEECCCc-----EEEEEC
Q 006220 426 SASFSPLGDFILSSSAD------TTIRLWSTKLNANLV--CYKGHNYPVWDVQFNPQGHYFASSSHDRT-----ARIWSM 492 (656)
Q Consensus 426 ~l~~spd~~~L~s~s~D------g~I~lwd~~~~~~~~--~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~-----i~lwd~ 492 (656)
+++.. ++...++|+.| .++..||..+++-.. .+....... +++. -+|...++||.||. +-.||.
T Consensus 327 ~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~-~v~~-l~g~iYavGG~dg~~~l~svE~YDp 403 (571)
T KOG4441|consen 327 GVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF-GVAV-LDGKLYAVGGFDGEKSLNSVECYDP 403 (571)
T ss_pred cEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc-eeEE-ECCEEEEEeccccccccccEEEecC
Confidence 34444 35677788888 356778877655222 111111111 1111 16888899998864 666776
Q ss_pred CCCceeEEecCCCCCeeEEEE-cCCCCEEEEEECCC------cEEEEeCCCCeeEEE--EecCCCCeEEEEEcCCCCEEE
Q 006220 493 DRIQPLRIMAGHLSDVDCVRW-HINCNYIATGSSDK------TVRLWDVSSGECVRI--FIGHRSMILSLAMSPDGRYMA 563 (656)
Q Consensus 493 ~~~~~~~~~~~~~~~V~~v~~-~p~~~~l~tgs~dg------~V~iwd~~~~~~~~~--~~~h~~~i~~l~~sp~g~~L~ 563 (656)
.+.+--..-. ......+... .-+|...++|+.++ +|..||..++..... +..-........ -++...+
T Consensus 404 ~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~--~~~~iYv 480 (571)
T KOG4441|consen 404 VTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV--LNGKIYV 480 (571)
T ss_pred CCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE--ECCEEEE
Confidence 6543221111 1111111111 23677777777553 577888877654322 111111122222 2477778
Q ss_pred EEECCCc-----EEEEeCCCCee--eEeeeCCCccEEEEEEcCCCCEEEEEECCC-----cEEEEeCCCCCc
Q 006220 564 SGDEDGT-----IMMWDLASGRC--VTPLMGHTSCVWTLAYSCEGSLLASGSADC-----TVKLWDVTTSTK 623 (656)
Q Consensus 564 s~~~dg~-----I~iwD~~~~~~--~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg-----~I~iWd~~~~~~ 623 (656)
.||.|+. |..||..+.+- +..+......+....+ ++...+.|+.|| +|..||..+.+-
T Consensus 481 vGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 481 VGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred ECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCce
Confidence 8887763 77788766543 3223333333323332 577888888876 477777666543
No 398
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.18 E-value=1.7 Score=43.96 Aligned_cols=202 Identities=16% Similarity=0.230 Sum_probs=119.3
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEecc------CC-ceeEEeeC-----CCccEEEEEEecCC------------CEEE
Q 006220 424 VYSASFSPLGDFILSSSADTTIRLWSTK------LN-ANLVCYKG-----HNYPVWDVQFNPQG------------HYFA 479 (656)
Q Consensus 424 V~~l~~spd~~~L~s~s~Dg~I~lwd~~------~~-~~~~~~~~-----h~~~V~~l~~sp~~------------~~l~ 479 (656)
-+.|+++|.+.+-++....+...+||.. .. ..+..+.. .....+.+.|+... ..|+
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4689999999888888888899999986 12 22333332 12346677777432 2378
Q ss_pred EEECCCcEEEEECCCCc-----eeEEec-CCCCCe-eEEEEcC--CCCEEEEEE-CCCcEEEEeCCCCeeEEE---EecC
Q 006220 480 SSSHDRTARIWSMDRIQ-----PLRIMA-GHLSDV-DCVRWHI--NCNYIATGS-SDKTVRLWDVSSGECVRI---FIGH 546 (656)
Q Consensus 480 sgs~Dg~i~lwd~~~~~-----~~~~~~-~~~~~V-~~v~~~p--~~~~l~tgs-~dg~V~iwd~~~~~~~~~---~~~h 546 (656)
.++.||+|.-|...-.. ....+. .....| ..+++.. .+++|+.+. ..++|.+||-.- ..+.. |...
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f-~~~~~~g~F~DP 183 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF-RPPPLPGSFIDP 183 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc-ccccCCCCccCC
Confidence 88999999999853211 112222 111222 3455543 356665543 678999998542 22211 1111
Q ss_pred C-----CC-----------eEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeC--CCccEEEEEEcC------CCC
Q 006220 547 R-----SM-----------ILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG--HTSCVWTLAYSC------EGS 602 (656)
Q Consensus 547 ~-----~~-----------i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~--h~~~V~~l~~s~------~~~ 602 (656)
. .+ |+-..-.++++.=+.|..-|.|-+||+ .|+.+.++.. .-...|.|+..| .+.
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 0 00 111111112222222334478999997 6888887742 235668888766 467
Q ss_pred EEEEEECCCcEEEEeCCCCCceeec
Q 006220 603 LLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 603 ~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
+|+---.||+|..+|..++..+-.+
T Consensus 263 lLVGNFGDG~InaFD~~sG~~~g~L 287 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGAQLGQL 287 (336)
T ss_pred eEEeecCCceeEEecCCCCceeeee
Confidence 7887778999999999988765444
No 399
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.08 E-value=1.2 Score=44.31 Aligned_cols=184 Identities=14% Similarity=0.178 Sum_probs=103.4
Q ss_pred EEccCCCEEEEEeCC-----CeEEEEeccCC-ceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEE--------ECC
Q 006220 428 SFSPLGDFILSSSAD-----TTIRLWSTKLN-ANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIW--------SMD 493 (656)
Q Consensus 428 ~~spd~~~L~s~s~D-----g~I~lwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lw--------d~~ 493 (656)
.|||||.+|...-.| |.|-|||.+.+ ..+..+..|.-.-..+.|.+||+.++.+. |-|..- +++
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNld 197 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLD 197 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchh
Confidence 599999998876544 78999998743 44567778887888999999999988874 223322 233
Q ss_pred CCceeEEe--------------c--CCCCCeeEEEEcCCCCEEEEEECCCc-----EEEEeCCCCeeEEEEe-------c
Q 006220 494 RIQPLRIM--------------A--GHLSDVDCVRWHINCNYIATGSSDKT-----VRLWDVSSGECVRIFI-------G 545 (656)
Q Consensus 494 ~~~~~~~~--------------~--~~~~~V~~v~~~p~~~~l~tgs~dg~-----V~iwd~~~~~~~~~~~-------~ 545 (656)
+.+|...+ . .+.-.|..++..++|..++.+-..|. --+=-...++.+..+. .
T Consensus 198 sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~ 277 (366)
T COG3490 198 SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAA 277 (366)
T ss_pred hcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHH
Confidence 33332211 1 12334556666666554433221110 0000111222222221 1
Q ss_pred CCCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEe
Q 006220 546 HRSMILSLAMSPDGRYMASGD-EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWD 617 (656)
Q Consensus 546 h~~~i~~l~~sp~g~~L~s~~-~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd 617 (656)
....|-+|+.+-+..+++..+ ..+...+||..+|..+..-.-.. +..++- ...-++..+.+|.|.+++
T Consensus 278 ~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d--aaGva~--~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 278 FANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD--AAGVAA--AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred HHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc--ccccee--ccCceEEecCCceEEecc
Confidence 223566777776555555544 55678899999998775532211 122222 233466666788888774
No 400
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.07 E-value=2.1 Score=44.04 Aligned_cols=240 Identities=15% Similarity=0.120 Sum_probs=111.4
Q ss_pred eeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEE-ee-cCccCEE
Q 006220 348 INTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTL-YQ-GHSGPVY 425 (656)
Q Consensus 348 ~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~-~h~~~V~ 425 (656)
......+..|.|..+..-+|+| ..+.| +.....+.. ...... .. .-.-..+
T Consensus 13 l~t~~~l~dV~F~d~~~G~~VG-~~g~i--l~T~DGG~t------------------------W~~~~~~~~~~~~~~l~ 65 (302)
T PF14870_consen 13 LPTDKPLLDVAFVDPNHGWAVG-AYGTI--LKTTDGGKT------------------------WQPVSLDLDNPFDYHLN 65 (302)
T ss_dssp -S-SS-EEEEEESSSS-EEEEE-TTTEE--EEESSTTSS-------------------------EE-----S-----EEE
T ss_pred cCCCCceEEEEEecCCEEEEEe-cCCEE--EEECCCCcc------------------------ccccccCCCccceeeEE
Confidence 3445679999999767777777 45543 333321110 000000 00 0012356
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeccCCceeEEee---CCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee-EEe
Q 006220 426 SASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK---GHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL-RIM 501 (656)
Q Consensus 426 ~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~---~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~-~~~ 501 (656)
+|.|..+ ..+++ +..+ +.+...+.+..-..+. .-......+....++. ...++..|.|+ ...+.++.- ...
T Consensus 66 ~I~f~~~-~g~iv-G~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~-~~l~~~~G~iy-~T~DgG~tW~~~~ 140 (302)
T PF14870_consen 66 SISFDGN-EGWIV-GEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGS-AELAGDRGAIY-RTTDGGKTWQAVV 140 (302)
T ss_dssp EEEEETT-EEEEE-EETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTE-EEEEETT--EE-EESSTTSSEEEEE
T ss_pred EEEecCC-ceEEE-cCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCc-EEEEcCCCcEE-EeCCCCCCeeEcc
Confidence 7777643 33444 4445 4455555454433322 1122233444444443 33344445433 223334332 233
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC-CCCe
Q 006220 502 AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL-ASGR 580 (656)
Q Consensus 502 ~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~-~~~~ 580 (656)
....+.+..+..+++|.++++++......-||--...-...-..-...|..|.|+|++.+.+.+ ..|.|++=+. ....
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 4555778888889999999998776667788754322222233345789999999998766654 7888888772 2222
Q ss_pred eeEe----eeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220 581 CVTP----LMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 581 ~~~~----~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
.... .....-.+..++|.+++...++|+ .|++ +...+.++
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGk 263 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGK 263 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTS
T ss_pred ccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCc
Confidence 2111 112223588999999887777665 4444 34444444
No 401
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.06 E-value=1.5 Score=42.40 Aligned_cols=134 Identities=13% Similarity=0.232 Sum_probs=85.6
Q ss_pred ccEEEEEEecCCCEEEEEECC---------CcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEE-EEECCCcEEEEe
Q 006220 464 YPVWDVQFNPQGHYFASSSHD---------RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIA-TGSSDKTVRLWD 533 (656)
Q Consensus 464 ~~V~~l~~sp~~~~l~sgs~D---------g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~-tgs~dg~V~iwd 533 (656)
....+-..+|+|++++-.-.| |.++.|-... .+..+.....--+.++|+.+.+.++ +-+.+-+|.-||
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d 186 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD 186 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccCC--CceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence 345667788999985433322 4455554322 2222222233346788887766554 455667787777
Q ss_pred --CCCCeeE-----EEEec---CCC-CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcC
Q 006220 534 --VSSGECV-----RIFIG---HRS-MILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSC 599 (656)
Q Consensus 534 --~~~~~~~-----~~~~~---h~~-~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~ 599 (656)
..+|... ..+.. ... .--.+++..+|++.+++-..|+|...|..+|+.+.++.-....|+|++|--
T Consensus 187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 5565432 12211 011 122355566888888988999999999999999999998899999999954
No 402
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.02 E-value=0.59 Score=47.04 Aligned_cols=145 Identities=21% Similarity=0.205 Sum_probs=90.2
Q ss_pred cEEEEEEecCCCEEEEEE---CCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEe-CCCCeeE
Q 006220 465 PVWDVQFNPQGHYFASSS---HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWD-VSSGECV 540 (656)
Q Consensus 465 ~V~~l~~sp~~~~l~sgs---~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd-~~~~~~~ 540 (656)
.+.+.++++++..++... ....++++... ....... ....+..-.|++++...+....+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 678899999999877766 33445555443 3333321 223678889999987777767677777773 3333322
Q ss_pred EE-E-ec-CCCCeEEEEEcCCCCEEEEEE---CCCcEEEEeCC---CC--e----eeEeeeCCCccEEEEEEcCCCCEEE
Q 006220 541 RI-F-IG-HRSMILSLAMSPDGRYMASGD---EDGTIMMWDLA---SG--R----CVTPLMGHTSCVWTLAYSCEGSLLA 605 (656)
Q Consensus 541 ~~-~-~~-h~~~i~~l~~sp~g~~L~s~~---~dg~I~iwD~~---~~--~----~~~~~~~h~~~V~~l~~s~~~~~l~ 605 (656)
.. . .. -.+.|+.+.+||||..++... .++.|.+=-+. .+ . .+.........+.+++|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 21 1 11 112899999999999877655 35677766442 22 1 1111112346789999999998877
Q ss_pred EEECCCc
Q 006220 606 SGSADCT 612 (656)
Q Consensus 606 sgs~Dg~ 612 (656)
.+...+.
T Consensus 182 ~~~~~~~ 188 (253)
T PF10647_consen 182 LGRSAGG 188 (253)
T ss_pred EeCCCCC
Confidence 7665443
No 403
>PHA02713 hypothetical protein; Provisional
Probab=96.01 E-value=0.16 Score=57.47 Aligned_cols=147 Identities=3% Similarity=-0.142 Sum_probs=75.3
Q ss_pred CCCEEEEEeCCC-----eEEEEeccCCceeE--EeeCCCccEEEEEEecCCCEEEEEECCC-------------------
Q 006220 432 LGDFILSSSADT-----TIRLWSTKLNANLV--CYKGHNYPVWDVQFNPQGHYFASSSHDR------------------- 485 (656)
Q Consensus 432 d~~~L~s~s~Dg-----~I~lwd~~~~~~~~--~~~~h~~~V~~l~~sp~~~~l~sgs~Dg------------------- 485 (656)
+|...+.||.++ ++..||..+.+-.. .+.........+. -+|...+.||.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccc
Confidence 466667777653 47888877543221 1111111111122 2577777787653
Q ss_pred ----cEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECC------CcEEEEeCCC-Cee--EEEEecCCCCeEE
Q 006220 486 ----TARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD------KTVRLWDVSS-GEC--VRIFIGHRSMILS 552 (656)
Q Consensus 486 ----~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d------g~V~iwd~~~-~~~--~~~~~~h~~~i~~ 552 (656)
++..||..+.+-...-.-......+....-++...+.|+.+ ..|..||..+ .+- +..+.........
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~ 508 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHT 508 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccccee
Confidence 46677776654322111111111111112256666667654 2467899887 332 2333222222222
Q ss_pred EEEcCCCCEEEEEECCC--cEEEEeCCCCeee
Q 006220 553 LAMSPDGRYMASGDEDG--TIMMWDLASGRCV 582 (656)
Q Consensus 553 l~~sp~g~~L~s~~~dg--~I~iwD~~~~~~~ 582 (656)
+.+ +|+..++||.+| .+..||..+.+--
T Consensus 509 ~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 509 ILH--DNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred EEE--CCEEEEEeeecceeehhhcCccccccc
Confidence 333 578888898888 6777777665543
No 404
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.99 E-value=0.58 Score=46.53 Aligned_cols=144 Identities=14% Similarity=0.190 Sum_probs=95.3
Q ss_pred EEEEEEecC-CCEEEEEECCCc-EEEEECCCCceeEEecCCCCC--eeEEEEcCCCCEEEEEECC-----CcEEEEeCCC
Q 006220 466 VWDVQFNPQ-GHYFASSSHDRT-ARIWSMDRIQPLRIMAGHLSD--VDCVRWHINCNYIATGSSD-----KTVRLWDVSS 536 (656)
Q Consensus 466 V~~l~~sp~-~~~l~sgs~Dg~-i~lwd~~~~~~~~~~~~~~~~--V~~v~~~p~~~~l~tgs~d-----g~V~iwd~~~ 536 (656)
..+|.++|. ..-++.+-.-|+ ..++|....+....+....+. .-.-.|||+|.+|++.-.| |.|-+||.+.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 345777774 444666666665 467888776554443311111 1123689999999886443 7899999985
Q ss_pred C-eeEEEEecCCCCeEEEEEcCCCCEEEEEEC------------------CCcEEEEeCCCCeeeEeee----CCCccEE
Q 006220 537 G-ECVRIFIGHRSMILSLAMSPDGRYMASGDE------------------DGTIMMWDLASGRCVTPLM----GHTSCVW 593 (656)
Q Consensus 537 ~-~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~------------------dg~I~iwD~~~~~~~~~~~----~h~~~V~ 593 (656)
+ +.+..+.+|.-.-..+.+.+||+.|+.+.. .-++.+.|..+|..+.+.. .+.-.|.
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiR 229 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIR 229 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhccee
Confidence 4 556678888878889999999999887642 1235555666666654432 2445788
Q ss_pred EEEEcCCCCEEEEEEC
Q 006220 594 TLAYSCEGSLLASGSA 609 (656)
Q Consensus 594 ~l~~s~~~~~l~sgs~ 609 (656)
.++..+||++++.+-.
T Consensus 230 Hld~g~dgtvwfgcQy 245 (366)
T COG3490 230 HLDIGRDGTVWFGCQY 245 (366)
T ss_pred eeeeCCCCcEEEEEEe
Confidence 8898888887766543
No 405
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.95 E-value=1.2 Score=47.78 Aligned_cols=83 Identities=18% Similarity=0.271 Sum_probs=59.2
Q ss_pred CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCC-eEEEEEcCC-----------------CCEEE-E
Q 006220 504 HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSM-ILSLAMSPD-----------------GRYMA-S 564 (656)
Q Consensus 504 ~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~-i~~l~~sp~-----------------g~~L~-s 564 (656)
....+.+++.+|++++.++...=|.|.++|+.++..++.++|.... +.-+..... ..+|+ -
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 3345788999999999998888899999999999999998876542 111111111 11222 3
Q ss_pred EECCCcEEEEeCCCCeeeEeee
Q 006220 565 GDEDGTIMMWDLASGRCVTPLM 586 (656)
Q Consensus 565 ~~~dg~I~iwD~~~~~~~~~~~ 586 (656)
+-.-|.|.||.+++|..+..+.
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 5567899999999998877664
No 406
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.94 E-value=2.3 Score=49.27 Aligned_cols=183 Identities=9% Similarity=0.145 Sum_probs=109.6
Q ss_pred EEEEEeCCCeEEEEeccCCce--eEEeeCCCccEEEEEEecCCCEEEEEEC-----------C---CcEEEEECCCCcee
Q 006220 435 FILSSSADTTIRLWSTKLNAN--LVCYKGHNYPVWDVQFNPQGHYFASSSH-----------D---RTARIWSMDRIQPL 498 (656)
Q Consensus 435 ~L~s~s~Dg~I~lwd~~~~~~--~~~~~~h~~~V~~l~~sp~~~~l~sgs~-----------D---g~i~lwd~~~~~~~ 498 (656)
.|+++.. +.+++.-++.-+. +.+..- ..+...+++.+....+.+.+. . ..++++|-.+.+.+
T Consensus 686 ~l~~~~~-~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl 763 (1096)
T KOG1897|consen 686 SLASANG-GALTIGTIDEIQKLHIRTVPL-GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVL 763 (1096)
T ss_pred eEEEecC-CceEEEEecchhhcceeeecC-CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEE
Confidence 4555554 4577766654332 223222 234456677664444444432 1 13555555544333
Q ss_pred EEecC----CCCCeeEEEEcCC-CCEEEEEE----------CCCcEEEEeCCCCeeEEEEecC--CCCeEEEEEcCCCCE
Q 006220 499 RIMAG----HLSDVDCVRWHIN-CNYIATGS----------SDKTVRLWDVSSGECVRIFIGH--RSMILSLAMSPDGRY 561 (656)
Q Consensus 499 ~~~~~----~~~~V~~v~~~p~-~~~l~tgs----------~dg~V~iwd~~~~~~~~~~~~h--~~~i~~l~~sp~g~~ 561 (656)
....- ....+.++.|+.+ +.++++|+ ..|.|.+|....++.+.....+ .+.+.++..- +|++
T Consensus 764 ~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkl 842 (1096)
T KOG1897|consen 764 SSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKL 842 (1096)
T ss_pred eeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeE
Confidence 32221 1123555668766 67788775 3477777777664444433322 2444444322 5777
Q ss_pred EEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 006220 562 MASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTST 622 (656)
Q Consensus 562 L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~ 622 (656)
||+-+ ..|++|++.+.+.+..-..|..++..+...-.|..++.|..-++|.+-..+..+
T Consensus 843 lA~In--~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 843 LAGIN--QSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred EEecC--cEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence 77554 589999999987777777888899999999999999999988887776665544
No 407
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.94 E-value=0.6 Score=46.76 Aligned_cols=193 Identities=16% Similarity=0.167 Sum_probs=122.8
Q ss_pred EEEccCCC-EEEEEeCCCeEEEEeccCCcee--EEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec-
Q 006220 427 ASFSPLGD-FILSSSADTTIRLWSTKLNANL--VCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA- 502 (656)
Q Consensus 427 l~~spd~~-~L~s~s~Dg~I~lwd~~~~~~~--~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~- 502 (656)
.+|-+.+. +...++.. ..+|...-...+ .-+.+-...+.++.|+|+.+.+++........+|=...++.++.+.
T Consensus 48 ~a~~k~~~~~~~~~~r~--~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL 125 (316)
T COG3204 48 CAWFKAGQTNGLDLSRY--IARYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPL 125 (316)
T ss_pred eEEEeccccccccccch--hhhccCCceEEEeccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecc
Confidence 33433333 34444444 555554322221 1123445569999999999999988888888888888888888876
Q ss_pred CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe---------cC-CCCeEEEEEcCCCCEEEEEECCCcEE
Q 006220 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI---------GH-RSMILSLAMSPDGRYMASGDEDGTIM 572 (656)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~---------~h-~~~i~~l~~sp~g~~L~s~~~dg~I~ 572 (656)
....+...+.|..++++.++--.++.+.++.+..+..+..+. .+ ....-.++|.|..+.|..+-+-.=+.
T Consensus 126 ~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~ 205 (316)
T COG3204 126 TGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIG 205 (316)
T ss_pred cccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcE
Confidence 234567788888888888888888999888776553222111 12 34567899999998888888877777
Q ss_pred EEeCCCCee---eEeeeCCC-------ccEEEEEEcCC-CCEEEEEECCCcEEEEeCCCC
Q 006220 573 MWDLASGRC---VTPLMGHT-------SCVWTLAYSCE-GSLLASGSADCTVKLWDVTTS 621 (656)
Q Consensus 573 iwD~~~~~~---~~~~~~h~-------~~V~~l~~s~~-~~~l~sgs~Dg~I~iWd~~~~ 621 (656)
||.+..+.. +.....++ ..|.++.|++. +.+|+-+..++.+.-.|....
T Consensus 206 I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 206 IFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred EEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 777653221 11111111 24667778764 455666666666666665443
No 408
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.76 E-value=0.11 Score=60.31 Aligned_cols=143 Identities=13% Similarity=0.011 Sum_probs=92.2
Q ss_pred cCEEEEEEccCCCEEE--EEeCCCeEEEEeccCCceeE-----EeeC------CCccEEEEEEecCC-CEEEEEECCCcE
Q 006220 422 GPVYSASFSPLGDFIL--SSSADTTIRLWSTKLNANLV-----CYKG------HNYPVWDVQFNPQG-HYFASSSHDRTA 487 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~--s~s~Dg~I~lwd~~~~~~~~-----~~~~------h~~~V~~l~~sp~~-~~l~sgs~Dg~i 487 (656)
-++..+..++|+...+ ..+.+-.|..||+++...-. -+.. ......++.|+|.- ..++++..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 4555566666765433 33444478889987543211 1111 12335678899853 346777889999
Q ss_pred EEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec----CCCCeEEEEEcCCCCEEE
Q 006220 488 RIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG----HRSMILSLAMSPDGRYMA 563 (656)
Q Consensus 488 ~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~----h~~~i~~l~~sp~g~~L~ 563 (656)
++..+....+...--.-...++|++|+|.|..+++|-..|++.-|-.. ++..+.+.+ ....|.||+|-....+++
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 998876443332222345678999999999999999999999888753 333333322 136799999987777776
Q ss_pred EE
Q 006220 564 SG 565 (656)
Q Consensus 564 s~ 565 (656)
+-
T Consensus 260 vy 261 (1405)
T KOG3630|consen 260 VY 261 (1405)
T ss_pred Ee
Confidence 53
No 409
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.75 E-value=1.8 Score=44.46 Aligned_cols=153 Identities=16% Similarity=0.170 Sum_probs=80.8
Q ss_pred eCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeC-CCCe
Q 006220 460 KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDV-SSGE 538 (656)
Q Consensus 460 ~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~-~~~~ 538 (656)
..-...+..+.-+++|.++++++......-||--...-...-......|..+.|.|++...+++ ..|.|+.=+. ....
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 3445678889999999999888776666678765432232333456789999999998766654 8888888772 2222
Q ss_pred eEEE-Ee---cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeee---CCCccEEEEEEcCCCCEEEEEECCC
Q 006220 539 CVRI-FI---GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM---GHTSCVWTLAYSCEGSLLASGSADC 611 (656)
Q Consensus 539 ~~~~-~~---~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~---~h~~~V~~l~~s~~~~~l~sgs~Dg 611 (656)
.... +. ...-.+..++|.+++...++|+ .|.+ +.....|+.-.... .-...++.+.|....+-+ ..+.+|
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf-~lG~~G 296 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGF-VLGQDG 296 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEE-EE-STT
T ss_pred ccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceE-EECCCc
Confidence 1111 11 1122478999999877777665 4544 34555666554443 223568889997654444 455677
Q ss_pred cEEEE
Q 006220 612 TVKLW 616 (656)
Q Consensus 612 ~I~iW 616 (656)
.|--|
T Consensus 297 ~ll~~ 301 (302)
T PF14870_consen 297 VLLRY 301 (302)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 76544
No 410
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.74 E-value=0.0039 Score=69.77 Aligned_cols=199 Identities=16% Similarity=0.188 Sum_probs=117.9
Q ss_pred EeecCccCEEEEEEccCC-CEEEEEeCCCeEEEEeccC--Cce-----eEEeeCCCccEEEEEEec---CCCEEEEEECC
Q 006220 416 LYQGHSGPVYSASFSPLG-DFILSSSADTTIRLWSTKL--NAN-----LVCYKGHNYPVWDVQFNP---QGHYFASSSHD 484 (656)
Q Consensus 416 ~l~~h~~~V~~l~~spd~-~~L~s~s~Dg~I~lwd~~~--~~~-----~~~~~~h~~~V~~l~~sp---~~~~l~sgs~D 484 (656)
...|.+|.|-.+.|-... ..+. -.-|...||+++- |+. +.....-..++.-+.|.| +..++..+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 355667778777775322 1222 2336788998762 222 122222334455666666 56778888889
Q ss_pred CcEEEEECCCCceeEEecCCCCCeeEEE-----------EcCCCCEEEEEECCCcEEEEeCC-----CCeeEEEEecCC-
Q 006220 485 RTARIWSMDRIQPLRIMAGHLSDVDCVR-----------WHINCNYIATGSSDKTVRLWDVS-----SGECVRIFIGHR- 547 (656)
Q Consensus 485 g~i~lwd~~~~~~~~~~~~~~~~V~~v~-----------~~p~~~~l~tgs~dg~V~iwd~~-----~~~~~~~~~~h~- 547 (656)
+++++...++... ..+.+|...+..++ .+|||..+++++.||.++.|.+. .-.|+..+..|.
T Consensus 205 ~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~ 283 (1283)
T KOG1916|consen 205 GEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK 283 (1283)
T ss_pred CceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC
Confidence 9999887765432 44455766554433 58999999999999999988764 334566677776
Q ss_pred CCeEEEEEcCC-------C--CEEEEEE-CCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCC------------EEE
Q 006220 548 SMILSLAMSPD-------G--RYMASGD-EDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGS------------LLA 605 (656)
Q Consensus 548 ~~i~~l~~sp~-------g--~~L~s~~-~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~------------~l~ 605 (656)
++-.|.-|..+ | .++++++ ....+++|.....+|+-.+ --..|..+. -+++. .++
T Consensus 284 ~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~--~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v 360 (1283)
T KOG1916|consen 284 HPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDK--LIDGVQIVG-PHDGEVTDLSMCQWMTTRLV 360 (1283)
T ss_pred CCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhh--cccceEeec-CCCccccchhhhHHHHHHHH
Confidence 44444444432 2 2344443 4556999998888877221 122233333 22222 244
Q ss_pred EEECCCcEEEEeCCC
Q 006220 606 SGSADCTVKLWDVTT 620 (656)
Q Consensus 606 sgs~Dg~I~iWd~~~ 620 (656)
+-+.+++|.+|.-..
T Consensus 361 ~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 361 SRSVDGTIKIWQNRK 375 (1283)
T ss_pred HhhhHHHHHHhhcch
Confidence 566778888886443
No 411
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.73 E-value=0.9 Score=49.64 Aligned_cols=148 Identities=15% Similarity=0.222 Sum_probs=90.1
Q ss_pred cCEEEEEEccCCCEEE-EEe--CCCeEEEEeccCCceeEEeeCCCccEEEEEEecC----CCEEEEEECCCcEEEEECC-
Q 006220 422 GPVYSASFSPLGDFIL-SSS--ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQ----GHYFASSSHDRTARIWSMD- 493 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~-s~s--~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~----~~~l~sgs~Dg~i~lwd~~- 493 (656)
.||.+++|. ||+.++ +.- .+|.+++=|. .. -|.-..|.++.|.|- ...++...+...|.+|-+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~v----iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KV----IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc---cE----eeccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 578999997 565443 332 2333332221 11 233446889999994 3356666678899999874
Q ss_pred ----CCceeEEecCCC---CC--eeEEEEcCCCCEEEEEECCCcEEEEeCCCC-eeEEEEecCCCCeEEEEEcCCCCEEE
Q 006220 494 ----RIQPLRIMAGHL---SD--VDCVRWHINCNYIATGSSDKTVRLWDVSSG-ECVRIFIGHRSMILSLAMSPDGRYMA 563 (656)
Q Consensus 494 ----~~~~~~~~~~~~---~~--V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~-~~~~~~~~h~~~i~~l~~sp~g~~L~ 563 (656)
+.+.+.....+- -+ -..+.|||....|++-+....-.+++++.. ..+..=....+-|.|.+|.+||+.|+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence 223222221111 11 246789999999888766655556676533 33332234568899999999998776
Q ss_pred EE-ECCCcEEEEeCC
Q 006220 564 SG-DEDGTIMMWDLA 577 (656)
Q Consensus 564 s~-~~dg~I~iwD~~ 577 (656)
++ +..=.-+|||-.
T Consensus 172 VAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSA 186 (671)
T ss_pred EEeCCeEEEEEecCc
Confidence 65 444467789853
No 412
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.70 E-value=2.4 Score=44.74 Aligned_cols=195 Identities=16% Similarity=0.167 Sum_probs=97.7
Q ss_pred EEccCCCEEEEEe-CCC--eEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCC
Q 006220 428 SFSPLGDFILSSS-ADT--TIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH 504 (656)
Q Consensus 428 ~~spd~~~L~s~s-~Dg--~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~ 504 (656)
+|.++|+.|+.++ .|| .+.+.|+.+++..+...+-.....+..++|+++.++-......++-.|+++.+...++...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 5778897665444 455 4666677777665544433333446778898888877767788999999998776666666
Q ss_pred CCCeeEEEEc--CCCCEEEEEE----------------------CCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCC
Q 006220 505 LSDVDCVRWH--INCNYIATGS----------------------SDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGR 560 (656)
Q Consensus 505 ~~~V~~v~~~--p~~~~l~tgs----------------------~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~ 560 (656)
...+....|. .++..++..- -...|.-.|+.+|+....+. ....+..+.|||...
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp 200 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDP 200 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCC
Confidence 5556555664 4555544321 11345556788877655554 456788899999654
Q ss_pred E-EEEEEC---CCc-EEEEeCC-CCeeeEeeeCCC--ccEEEEEEcCCCCEEEEEE-----CCCcEEEEeCCCCCc
Q 006220 561 Y-MASGDE---DGT-IMMWDLA-SGRCVTPLMGHT--SCVWTLAYSCEGSLLASGS-----ADCTVKLWDVTTSTK 623 (656)
Q Consensus 561 ~-L~s~~~---dg~-I~iwD~~-~~~~~~~~~~h~--~~V~~l~~s~~~~~l~sgs-----~Dg~I~iWd~~~~~~ 623 (656)
. |+-|-+ +.. -+||=++ .|.....+..|. ..+..=-|.|||..|.--+ .+..|.-.|+.++..
T Consensus 201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~ 276 (386)
T PF14583_consen 201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER 276 (386)
T ss_dssp EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E
T ss_pred CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc
Confidence 4 444432 211 2445443 233333333332 3344556888887654422 233566667766654
No 413
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.67 E-value=2.3 Score=42.70 Aligned_cols=145 Identities=16% Similarity=0.136 Sum_probs=89.7
Q ss_pred CEEEEEEccCCCEEEEEe---CCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEE-CCCCc--
Q 006220 423 PVYSASFSPLGDFILSSS---ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWS-MDRIQ-- 496 (656)
Q Consensus 423 ~V~~l~~spd~~~L~s~s---~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd-~~~~~-- 496 (656)
.+.+.++++++..++... ....+.++... ....... ....+..-.|++++...+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 678899999999776655 33345555443 3332221 222677788999987777766666667774 22222
Q ss_pred eeEEecCCC-CCeeEEEEcCCCCEEEEEE---CCCcEEEEeCC---CC------eeEEEEecCCCCeEEEEEcCCCCEEE
Q 006220 497 PLRIMAGHL-SDVDCVRWHINCNYIATGS---SDKTVRLWDVS---SG------ECVRIFIGHRSMILSLAMSPDGRYMA 563 (656)
Q Consensus 497 ~~~~~~~~~-~~V~~v~~~p~~~~l~tgs---~dg~V~iwd~~---~~------~~~~~~~~h~~~i~~l~~sp~g~~L~ 563 (656)
++..-.... ..|..+.++|+|..++... .++.|.+--+. .+ ............++.+.|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 222211212 2899999999999887755 35677776543 22 11222223346789999999998877
Q ss_pred EEECCCc
Q 006220 564 SGDEDGT 570 (656)
Q Consensus 564 s~~~dg~ 570 (656)
.+...+.
T Consensus 182 ~~~~~~~ 188 (253)
T PF10647_consen 182 LGRSAGG 188 (253)
T ss_pred EeCCCCC
Confidence 7654443
No 414
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.59 E-value=0.036 Score=39.64 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=28.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 006220 351 HNGLNCASISQDGSLVAGGFSDSSLKVWDMA 381 (656)
Q Consensus 351 ~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~ 381 (656)
...|.+++|||...+||.|+.+|.|.|+.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999985
No 415
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.52 E-value=2 Score=49.75 Aligned_cols=93 Identities=17% Similarity=0.214 Sum_probs=57.9
Q ss_pred cCEEEEEEccCCCEEEEEeCCCeEEEEeccC-CceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEE
Q 006220 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKL-NANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI 500 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~-~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~ 500 (656)
-.|..|.++|+|.+|+..|..| |.|-.+.. +.....+.+....|.|-.+.-+..++
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~---------------------- 141 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF---------------------- 141 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhc----------------------
Confidence 4688999999999999888865 55554432 22222233333334333332222111
Q ss_pred ecCCCCCeeEEEEcCC---CCEEEEEECCCcEEEEeCCCC
Q 006220 501 MAGHLSDVDCVRWHIN---CNYIATGSSDKTVRLWDVSSG 537 (656)
Q Consensus 501 ~~~~~~~V~~v~~~p~---~~~l~tgs~dg~V~iwd~~~~ 537 (656)
...+...|..+.|||. +.+|++-++|+++|+||+...
T Consensus 142 ~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 142 TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 1123456888899985 578889899999999999754
No 416
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.39 E-value=0.48 Score=51.69 Aligned_cols=148 Identities=11% Similarity=0.219 Sum_probs=89.8
Q ss_pred ccEEEEEEecCCCEEEEEE---CCCcEEEEECCCCceeEEecCCCCCeeEEEEcCC----CCEEEEEECCCcEEEEeCCC
Q 006220 464 YPVWDVQFNPQGHYFASSS---HDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHIN----CNYIATGSSDKTVRLWDVSS 536 (656)
Q Consensus 464 ~~V~~l~~sp~~~~l~sgs---~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~----~~~l~tgs~dg~V~iwd~~~ 536 (656)
.|+.+++|. ||+.++-.. .+|.+++=|. +.+ |....|..+.|.|- ...+++.-....|.+|.+..
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc---cEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 488999998 565544332 3444433321 122 34456899999984 33566666788999998852
Q ss_pred -----CeeEEEEecC-CC--C--eEEEEEcCCCCEEEEEECCCcEEEEeCCCC-eeeEeeeCCCccEEEEEEcCCCCEEE
Q 006220 537 -----GECVRIFIGH-RS--M--ILSLAMSPDGRYMASGDEDGTIMMWDLASG-RCVTPLMGHTSCVWTLAYSCEGSLLA 605 (656)
Q Consensus 537 -----~~~~~~~~~h-~~--~--i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~-~~~~~~~~h~~~V~~l~~s~~~~~l~ 605 (656)
++.+..-..+ .. + -..+.|+|....|++-.....-.+++++.. ..++.-....+.|.|.+|.+||+.|+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence 2222221111 11 1 134679999888888766555556666543 23332235568899999999999877
Q ss_pred EEECC-CcEEEEeCC
Q 006220 606 SGSAD-CTVKLWDVT 619 (656)
Q Consensus 606 sgs~D-g~I~iWd~~ 619 (656)
.+-.. =.-+|||-.
T Consensus 172 VAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSA 186 (671)
T ss_pred EEeCCeEEEEEecCc
Confidence 66433 346788743
No 417
>PHA02790 Kelch-like protein; Provisional
Probab=95.37 E-value=0.7 Score=51.27 Aligned_cols=179 Identities=8% Similarity=-0.025 Sum_probs=85.4
Q ss_pred CCEEEEEeCC-----CeEEEEeccCCceeEE--eeCCCccEEEEEEecCCCEEEEEECC--CcEEEEECCCCceeEE--e
Q 006220 433 GDFILSSSAD-----TTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHD--RTARIWSMDRIQPLRI--M 501 (656)
Q Consensus 433 ~~~L~s~s~D-----g~I~lwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~l~sgs~D--g~i~lwd~~~~~~~~~--~ 501 (656)
+..++.|+.+ .++..||..++..... +....... +++ .-++...+.||.+ .++..||..+.+-... +
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 4445566543 2466777765443221 11111111 122 2367777888754 3577788765432211 1
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEECCC---cEEEEeCCCCeeEEEE--ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220 502 AGHLSDVDCVRWHINCNYIATGSSDK---TVRLWDVSSGECVRIF--IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (656)
Q Consensus 502 ~~~~~~V~~v~~~p~~~~l~tgs~dg---~V~iwd~~~~~~~~~~--~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~ 576 (656)
.........+. -+|...+.|+.++ .+..||.++..-...- ....... ++ ..-+|+..+.| |.+.+||.
T Consensus 350 ~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~G---G~~e~ydp 422 (480)
T PHA02790 350 LKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVG---RNAEFYCE 422 (480)
T ss_pred CCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEEC---CceEEecC
Confidence 11111111222 3566667777553 4778888765433211 1011111 22 22345555555 35778888
Q ss_pred CCCee--eEeeeCCCccEEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCC
Q 006220 577 ASGRC--VTPLMGHTSCVWTLAYSCEGSLLASGSAD-----CTVKLWDVTTST 622 (656)
Q Consensus 577 ~~~~~--~~~~~~h~~~V~~l~~s~~~~~l~sgs~D-----g~I~iWd~~~~~ 622 (656)
.+++- +..+.........+. -+|++.+.||.+ .+|.+||..+.+
T Consensus 423 ~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 423 SSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 76543 222222122222222 367788888754 346677766543
No 418
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.25 E-value=7.4 Score=45.29 Aligned_cols=173 Identities=12% Similarity=0.173 Sum_probs=113.5
Q ss_pred eEEEEeccCCceeEEeeCC----CccEEEEEEecC-CCEEEEEEC----------CCcEEEEECCCCceeEEecCCC--C
Q 006220 444 TIRLWSTKLNANLVCYKGH----NYPVWDVQFNPQ-GHYFASSSH----------DRTARIWSMDRIQPLRIMAGHL--S 506 (656)
Q Consensus 444 ~I~lwd~~~~~~~~~~~~h----~~~V~~l~~sp~-~~~l~sgs~----------Dg~i~lwd~~~~~~~~~~~~~~--~ 506 (656)
.++++|-++.+.+...+-. ...|.++.|..+ +.++++|.. .|.|.++.+...+.+.....+. +
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G 830 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG 830 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence 4677776666555433321 123555568777 777888762 4778888877655555444332 2
Q ss_pred CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe--eeEe
Q 006220 507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGR--CVTP 584 (656)
Q Consensus 507 ~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~--~~~~ 584 (656)
.|.++.- -+|+++|. -+..|++|+..+++.++.-..|..++..+...-.|..+++|..-+++.+...+..+ ....
T Consensus 831 av~aL~~-fngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~ev 907 (1096)
T KOG1897|consen 831 AVYALVE-FNGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEV 907 (1096)
T ss_pred ceeehhh-hCCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEe
Confidence 3333321 26666654 45689999999998888888889999999999999999999988887776554433 3322
Q ss_pred ee-CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 585 LM-GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 585 ~~-~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
-+ .+....+++.+- ++..++.+..+|.+.+-...+
T Consensus 908 ArD~~p~Wmtaveil-~~d~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 908 ARDYNPNWMTAVEIL-DDDTYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred ehhhCccceeeEEEe-cCceEEeecccccEEEEEecC
Confidence 22 344566666664 344566677888888877664
No 419
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.23 E-value=0.055 Score=38.70 Aligned_cols=35 Identities=23% Similarity=0.442 Sum_probs=30.6
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeee
Q 006220 547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582 (656)
Q Consensus 547 ~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~ 582 (656)
...|.+++|+|...+||.|+.+|.|.++.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 357999999999999999999999999998 55543
No 420
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.22 E-value=1.7 Score=48.88 Aligned_cols=172 Identities=13% Similarity=0.180 Sum_probs=88.5
Q ss_pred cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEe----eCCCccEEEEEEecCCCEEEEEECCCcEEEEE-CCCCc
Q 006220 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCY----KGHNYPVWDVQFNPQGHYFASSSHDRTARIWS-MDRIQ 496 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~----~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd-~~~~~ 496 (656)
+++..+.|+.+ ..|+....+|++++|++. |..+..+ ......|..+.+..+|-.+++ .+|.+.+-+ ....
T Consensus 84 ~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~~- 158 (829)
T KOG2280|consen 84 GELIGMGWSDD-EELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGVAVLT--VSGQVILINGVEEP- 158 (829)
T ss_pred CCeeeecccCC-ceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCceEEEe--cCCcEEEEcCCCcc-
Confidence 47889999965 557777899999999986 3332221 223334555556556643333 345554433 3221
Q ss_pred eeEEecC-CCCCeeEEEEc--CCCC-EEEEEECCCc--EEEEeCC--CCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 006220 497 PLRIMAG-HLSDVDCVRWH--INCN-YIATGSSDKT--VRLWDVS--SGECVRIFIGHRSMILSLAMSPDGRYMASGDED 568 (656)
Q Consensus 497 ~~~~~~~-~~~~V~~v~~~--p~~~-~l~tgs~dg~--V~iwd~~--~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d 568 (656)
..+.+.. ..+...+.+|. +++. ....-..+-. ..++-.. +.+... +....+.+..+..||++++|+--..+
T Consensus 159 ~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~-~~~~~~~~~ki~VS~n~~~laLyt~~ 237 (829)
T KOG2280|consen 159 KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHA-LSWPNSSVVKISVSPNRRFLALYTET 237 (829)
T ss_pred hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccc-cCCCCceEEEEEEcCCcceEEEEecC
Confidence 1222221 11112222232 2211 1111111100 0111111 112111 22223567889999999999999999
Q ss_pred CcEEEEeCCCCeeeEeee--CCCccEEEEEEcCC
Q 006220 569 GTIMMWDLASGRCVTPLM--GHTSCVWTLAYSCE 600 (656)
Q Consensus 569 g~I~iwD~~~~~~~~~~~--~h~~~V~~l~~s~~ 600 (656)
|.|.+-+....+++..+. .|. +...++|..+
T Consensus 238 G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcgn 270 (829)
T KOG2280|consen 238 GKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCGN 270 (829)
T ss_pred CcEEEEecchhhhhhccCCCCCC-chHhceeecC
Confidence 999999888777766654 232 2225555443
No 421
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.19 E-value=0.68 Score=49.42 Aligned_cols=142 Identities=18% Similarity=0.226 Sum_probs=79.9
Q ss_pred EEEEEEecCCCEEEEEE-----------CCC-cEEEEECCC--Cc--eeEEecCCCCCeeEEEEcCCCCEEEEEECCCcE
Q 006220 466 VWDVQFNPQGHYFASSS-----------HDR-TARIWSMDR--IQ--PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTV 529 (656)
Q Consensus 466 V~~l~~sp~~~~l~sgs-----------~Dg-~i~lwd~~~--~~--~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V 529 (656)
...|+|.++|+.+++-. ..+ .|.+++-.+ ++ ....+.........+++.+++ |++++.....
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i~ 93 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDIL 93 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeEE
Confidence 44788888888776643 223 676665432 22 234555445567889999988 4444444433
Q ss_pred EEEeCCC-----CeeEEE---Eec----CCCCeEEEEEcCCCCEEEEEECC-------------------CcEEEEeCCC
Q 006220 530 RLWDVSS-----GECVRI---FIG----HRSMILSLAMSPDGRYMASGDED-------------------GTIMMWDLAS 578 (656)
Q Consensus 530 ~iwd~~~-----~~~~~~---~~~----h~~~i~~l~~sp~g~~L~s~~~d-------------------g~I~iwD~~~ 578 (656)
++.|... ++.... +.. +......++|.|||.+.++.+.. |.|.-+|...
T Consensus 94 ~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg 173 (367)
T TIGR02604 94 FLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG 173 (367)
T ss_pred EEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCC
Confidence 4445432 122111 222 12447789999999876654421 3455555544
Q ss_pred CeeeEeeeCCCccEEEEEEcCCCCEEEEEECC
Q 006220 579 GRCVTPLMGHTSCVWTLAYSCEGSLLASGSAD 610 (656)
Q Consensus 579 ~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~D 610 (656)
++....-.++ ...+.++|+++|+++++-..+
T Consensus 174 ~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 174 GKLRVVAHGF-QNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CeEEEEecCc-CCCccceECCCCCEEEEccCC
Confidence 4322212233 345789999999987765433
No 422
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.12 E-value=0.23 Score=57.68 Aligned_cols=144 Identities=13% Similarity=0.083 Sum_probs=91.7
Q ss_pred CccEEEEEEecCCCEEEEE--ECCCcEEEEECCCCceeE-----Ee------cCCCCCeeEEEEcCCCC-EEEEEECCCc
Q 006220 463 NYPVWDVQFNPQGHYFASS--SHDRTARIWSMDRIQPLR-----IM------AGHLSDVDCVRWHINCN-YIATGSSDKT 528 (656)
Q Consensus 463 ~~~V~~l~~sp~~~~l~sg--s~Dg~i~lwd~~~~~~~~-----~~------~~~~~~V~~v~~~p~~~-~l~tgs~dg~ 528 (656)
..+|..+...+|+...++. +.+-.|..||++....-+ .+ ........++.|+|.-. ..++...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 3456666667776554443 344478899987532211 11 12223467889998543 3456678999
Q ss_pred EEEEeCCCCee-EEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeC----CCccEEEEEEcCCCCE
Q 006220 529 VRLWDVSSGEC-VRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG----HTSCVWTLAYSCEGSL 603 (656)
Q Consensus 529 V~iwd~~~~~~-~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~----h~~~V~~l~~s~~~~~ 603 (656)
|++..+..... +..+ .-....+|++|+|.|+.++.|...|++.-|.. +++....+.+ ....|.+++|-....+
T Consensus 180 l~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~ef 257 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEF 257 (1405)
T ss_pred hhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeE
Confidence 99887653322 2222 23456899999999999999999999999874 4443333332 1367999999776666
Q ss_pred EEEEE
Q 006220 604 LASGS 608 (656)
Q Consensus 604 l~sgs 608 (656)
+++-+
T Consensus 258 lvvy~ 262 (1405)
T KOG3630|consen 258 LVVYG 262 (1405)
T ss_pred EEEec
Confidence 65543
No 423
>PHA03098 kelch-like protein; Provisional
Probab=95.12 E-value=0.71 Score=52.01 Aligned_cols=142 Identities=10% Similarity=0.035 Sum_probs=67.4
Q ss_pred CCCEEEEEeCC-----CeEEEEeccCCceeEE--eeCCCccEEEEEEecCCCEEEEEECC------CcEEEEECCCCcee
Q 006220 432 LGDFILSSSAD-----TTIRLWSTKLNANLVC--YKGHNYPVWDVQFNPQGHYFASSSHD------RTARIWSMDRIQPL 498 (656)
Q Consensus 432 d~~~L~s~s~D-----g~I~lwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~l~sgs~D------g~i~lwd~~~~~~~ 498 (656)
++..++.|+.+ ..+..||..+++-... +...... .+++ .-++..++.||.+ ..+..||..+.+-.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 46666677654 3467788765432211 1111111 1122 2256677777732 35788888764332
Q ss_pred EEec--CCCCCeeEEEEcCCCCEEEEEECC--------CcEEEEeCCCCeeEEEE--ecCCCCeEEEEEcCCCCEEEEEE
Q 006220 499 RIMA--GHLSDVDCVRWHINCNYIATGSSD--------KTVRLWDVSSGECVRIF--IGHRSMILSLAMSPDGRYMASGD 566 (656)
Q Consensus 499 ~~~~--~~~~~V~~v~~~p~~~~l~tgs~d--------g~V~iwd~~~~~~~~~~--~~h~~~i~~l~~sp~g~~L~s~~ 566 (656)
..-. ...... +++ ..++..++.|+.+ ..+.+||..+++-...- .........+.+ +++.++.||
T Consensus 420 ~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG 495 (534)
T PHA03098 420 KGSPLPISHYGG-CAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGG 495 (534)
T ss_pred ecCCCCccccCc-eEE-EECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcC
Confidence 2111 111111 222 2345566666543 23888998876543321 111111112222 566666666
Q ss_pred CC-----CcEEEEeCCCC
Q 006220 567 ED-----GTIMMWDLASG 579 (656)
Q Consensus 567 ~d-----g~I~iwD~~~~ 579 (656)
.+ +.|.+||..+.
T Consensus 496 ~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 496 DKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CcCCcccceeEEEeCCCC
Confidence 44 35677776554
No 424
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.11 E-value=0.63 Score=52.59 Aligned_cols=186 Identities=15% Similarity=0.156 Sum_probs=97.2
Q ss_pred CCEEEEEeCC------CeEEEEeccCCceeEEeeC-CCccEEEEEEecCCCEEEEEECC------CcEEEEECCCCceeE
Q 006220 433 GDFILSSSAD------TTIRLWSTKLNANLVCYKG-HNYPVWDVQFNPQGHYFASSSHD------RTARIWSMDRIQPLR 499 (656)
Q Consensus 433 ~~~L~s~s~D------g~I~lwd~~~~~~~~~~~~-h~~~V~~l~~sp~~~~l~sgs~D------g~i~lwd~~~~~~~~ 499 (656)
+..++.|+.+ ..+..+|..++.-.....- ....-.+++.. ++..+++||.| .++..||..+.+-..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec
Confidence 3445555555 3577888776633222111 12223344444 56788899988 356677777665322
Q ss_pred Ee--cCCCCCeeEEEEcCCCCEEEEEECCC-----cEEEEeCCCCeeEEEEecCCCCeEE-EEEcCCCCEEEEEECCC--
Q 006220 500 IM--AGHLSDVDCVRWHINCNYIATGSSDK-----TVRLWDVSSGECVRIFIGHRSMILS-LAMSPDGRYMASGDEDG-- 569 (656)
Q Consensus 500 ~~--~~~~~~V~~v~~~p~~~~l~tgs~dg-----~V~iwd~~~~~~~~~~~~h~~~i~~-l~~sp~g~~L~s~~~dg-- 569 (656)
.- ........... -+|...++|+.|| +|..||..+.+--..-. +...... -...-+|...++||.++
T Consensus 364 ~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 364 VAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSS 440 (571)
T ss_pred cCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCc
Confidence 11 11111111111 2677788898886 47778877654322111 1111111 12223577778887554
Q ss_pred ----cEEEEeCCCCee--eEeeeCCCccEEEEEEcCCCCEEEEEECCCc-----EEEEeCCCCCce
Q 006220 570 ----TIMMWDLASGRC--VTPLMGHTSCVWTLAYSCEGSLLASGSADCT-----VKLWDVTTSTKV 624 (656)
Q Consensus 570 ----~I~iwD~~~~~~--~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~-----I~iWd~~~~~~~ 624 (656)
++..||..+++. +..+..-..... + -.-++.+.+.||.|+. |..+|..+.+-.
T Consensus 441 ~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~-a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~ 504 (571)
T KOG4441|consen 441 NCLNSVECYDPETNTWTLIAPMNTRRSGFG-V-AVLNGKIYVVGGFDGTSALSSVERYDPETNQWT 504 (571)
T ss_pred cccceEEEEcCCCCceeecCCcccccccce-E-EEECCEEEEECCccCCCccceEEEEcCCCCcee
Confidence 467888766542 333322111111 2 2235778888887763 667777765543
No 425
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.01 E-value=1.3 Score=42.97 Aligned_cols=132 Identities=11% Similarity=0.055 Sum_probs=82.2
Q ss_pred EEEEEEccCCCEEEEEeCC---------CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEE-EEECCCcEEEEE--
Q 006220 424 VYSASFSPLGDFILSSSAD---------TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA-SSSHDRTARIWS-- 491 (656)
Q Consensus 424 V~~l~~spd~~~L~s~s~D---------g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-sgs~Dg~i~lwd-- 491 (656)
...-..+|+|+++.-.-.| |.++.|-.. ..+..+...-.--..++|+.+...|. +-+.+-+|.-||
T Consensus 111 ~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd 188 (310)
T KOG4499|consen 111 LNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYD 188 (310)
T ss_pred cccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeeeecC
Confidence 3444567888874432222 344445432 22222222223334678887766654 445677887787
Q ss_pred CCCCc-----eeEEecC----CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcC
Q 006220 492 MDRIQ-----PLRIMAG----HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSP 557 (656)
Q Consensus 492 ~~~~~-----~~~~~~~----~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp 557 (656)
..++. .+..+.. .......++...+|+..++.-..++|...|..+|+.+..+.-....|+|++|--
T Consensus 189 ~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 189 CPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 33332 2222221 111233455567888888888999999999999999999998899999999973
No 426
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.88 E-value=0.21 Score=51.14 Aligned_cols=149 Identities=17% Similarity=0.196 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHHHhcCccHHHHHHHHHHhcCCCCCCCCCCCCC-CchhhcccccccccccCChhhHHHHHHHHHHHHhcc
Q 006220 3 ELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDIL-NDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSS 81 (656)
Q Consensus 3 ~~~~~~~v~~yl~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s 81 (656)
...++++|.+||-+.||..|-..|-+++...+- .+..+. .--.|.+.|. .+.+.-.-.|+...
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledl----vD~Dv~~~~~~I~~sll------------~~~l~~~Lswc~eh 178 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDL----VDSDVYKRAYGIRDSLL------------AGELEPALSWCKEH 178 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhh----HhHHHHHHHHHHHHHHH------------hcchHHHHHHHHHH
Confidence 356899999999999999999999988876432 111000 0001222221 12245567788776
Q ss_pred ccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhHHhhHHHHHHHhcCC-ChhhhccCHHHHHhhcCceEE
Q 006220 82 LDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVL-SPSHLEEMEFAHSLRHSKVNI 160 (656)
Q Consensus 82 ld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~k~~v 160 (656)
=-..|.+=+.|=|-+=..=|++||.-+...+|.+|++||=.-+...|.+||+.+.+.. -+..- -..||..
T Consensus 179 k~~LkK~~S~lEf~lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t---------~~sky~~ 249 (389)
T KOG0396|consen 179 KVELKKEESSLEFQLRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYT---------SSSKYLN 249 (389)
T ss_pred HHHHHhccchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCcccc---------CcccccC
Confidence 5555555567778888899999999999999999999999999889999999866543 22211 1345777
Q ss_pred EEchhhHHHHHH-HHhh
Q 006220 161 KICQYSYELLLQ-YLHK 176 (656)
Q Consensus 161 ~~~~~~~~~l~~-~l~~ 176 (656)
-++..-|+.|-. |+++
T Consensus 250 l~~~~rw~~l~~lF~s~ 266 (389)
T KOG0396|consen 250 LLTADRWSVLADLFLSE 266 (389)
T ss_pred cccHHHHHHHHHHhhHH
Confidence 777777776652 4443
No 427
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.87 E-value=6.1 Score=46.17 Aligned_cols=153 Identities=11% Similarity=0.133 Sum_probs=95.0
Q ss_pred CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccE-------------EEEEEec--CCCEEEEEEC----------CCc
Q 006220 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPV-------------WDVQFNP--QGHYFASSSH----------DRT 486 (656)
Q Consensus 432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V-------------~~l~~sp--~~~~l~sgs~----------Dg~ 486 (656)
.+..++.++.|+.+.-.|.++++.+..+.. .+.| ..+.-.| .+..+++|+. +|.
T Consensus 259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~ 337 (764)
T TIGR03074 259 CARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV 337 (764)
T ss_pred cCCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE
Confidence 345788888999999999999988866532 1111 0111122 2445666643 688
Q ss_pred EEEEECCCCceeEEecCC---------C--------CCe-eEEEEcCCCCEEEEEE------------------CCCcEE
Q 006220 487 ARIWSMDRIQPLRIMAGH---------L--------SDV-DCVRWHINCNYIATGS------------------SDKTVR 530 (656)
Q Consensus 487 i~lwd~~~~~~~~~~~~~---------~--------~~V-~~v~~~p~~~~l~tgs------------------~dg~V~ 530 (656)
|+-+|.++++.+-.+..- . ..+ ...++.+....++.+. ..+.|.
T Consensus 338 I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slv 417 (764)
T TIGR03074 338 IRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLV 417 (764)
T ss_pred EEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEE
Confidence 999999999877655310 0 011 2344555544544432 124566
Q ss_pred EEeCCCCeeEEEEecCCCC---------eEEEEEcC-CCC---EEEEEECCCcEEEEeCCCCeeeEee
Q 006220 531 LWDVSSGECVRIFIGHRSM---------ILSLAMSP-DGR---YMASGDEDGTIMMWDLASGRCVTPL 585 (656)
Q Consensus 531 iwd~~~~~~~~~~~~h~~~---------i~~l~~sp-~g~---~L~s~~~dg~I~iwD~~~~~~~~~~ 585 (656)
-.|.++|+....++..... ..-+.+.. +|+ .++.++.+|.+.++|.++|+.+...
T Consensus 418 ALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 418 ALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred EEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 6788899888777642211 11122333 563 7889999999999999999887654
No 428
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.80 E-value=0.027 Score=63.32 Aligned_cols=179 Identities=19% Similarity=0.220 Sum_probs=106.8
Q ss_pred CeEEEEeccCCce-eEEeeCCCccEEEEEEec-CCCEEEEEECCCcEEEEECCC--Cc-----eeEEecCCCCCeeEEEE
Q 006220 443 TTIRLWSTKLNAN-LVCYKGHNYPVWDVQFNP-QGHYFASSSHDRTARIWSMDR--IQ-----PLRIMAGHLSDVDCVRW 513 (656)
Q Consensus 443 g~I~lwd~~~~~~-~~~~~~h~~~V~~l~~sp-~~~~l~sgs~Dg~i~lwd~~~--~~-----~~~~~~~~~~~V~~v~~ 513 (656)
+.|++-+..+.-. -...++..+.|-.+.|-. +...+. -.-|.+.+|+++- ++ .+.......+++.-|.|
T Consensus 111 ~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~w 188 (1283)
T KOG1916|consen 111 NGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSW 188 (1283)
T ss_pred hhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeee
Confidence 4577766543221 123455666777777743 111111 2336788998763 22 12233344455666777
Q ss_pred cC---CCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEE-----------EcCCCCEEEEEECCCcEEEEeCC--
Q 006220 514 HI---NCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLA-----------MSPDGRYMASGDEDGTIMMWDLA-- 577 (656)
Q Consensus 514 ~p---~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~-----------~sp~g~~L~s~~~dg~I~iwD~~-- 577 (656)
+| +.-++..+-.++.|++....+... ..|.+|..+++.++ .||||..++.+..||.+++|.+-
T Consensus 189 cp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~ 267 (1283)
T KOG1916|consen 189 CPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYIT 267 (1283)
T ss_pred cccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeee
Confidence 65 677888888899999877654332 34556766655543 68999999999999998888763
Q ss_pred ---CCeeeEeeeCCC-ccEEEEEEcCCC---------CEEEEEE-CCCcEEEEeCCCCCce
Q 006220 578 ---SGRCVTPLMGHT-SCVWTLAYSCEG---------SLLASGS-ADCTVKLWDVTTSTKV 624 (656)
Q Consensus 578 ---~~~~~~~~~~h~-~~V~~l~~s~~~---------~~l~sgs-~Dg~I~iWd~~~~~~~ 624 (656)
.-+|++.++.|. ++-.|.-|+.+. .++++++ ....+++|....-++.
T Consensus 268 g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 268 GKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 335666777777 332222233221 2345544 3456889987766554
No 429
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.71 E-value=6.7 Score=41.94 Aligned_cols=193 Identities=11% Similarity=0.099 Sum_probs=93.9
Q ss_pred CCCEEEEEe-CCCeEEEEeccCCc----eeEEeeC---C----CccEEEEEEecCCCEEEEEE------CCCcEEEEECC
Q 006220 432 LGDFILSSS-ADTTIRLWSTKLNA----NLVCYKG---H----NYPVWDVQFNPQGHYFASSS------HDRTARIWSMD 493 (656)
Q Consensus 432 d~~~L~s~s-~Dg~I~lwd~~~~~----~~~~~~~---h----~~~V~~l~~sp~~~~l~sgs------~Dg~i~lwd~~ 493 (656)
+.++|+..+ ..+.|.|.|+.+.- ..+.+.. + -..-..+..-|+|..++++- .-|-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345666666 67889999987432 2233321 1 01223344556888888763 22567788887
Q ss_pred CCceeEEecCCC---CCeeEEEEcCCCCEEEEEE--------------------CCCcEEEEeCCCCeeEEEEecCC--C
Q 006220 494 RIQPLRIMAGHL---SDVDCVRWHINCNYIATGS--------------------SDKTVRLWDVSSGECVRIFIGHR--S 548 (656)
Q Consensus 494 ~~~~~~~~~~~~---~~V~~v~~~p~~~~l~tgs--------------------~dg~V~iwd~~~~~~~~~~~~h~--~ 548 (656)
+........... .--..+-|+|..+.++++. ...++.+||..+.+.++++.--. .
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 776666554322 2245677889888888863 24689999999999998886432 2
Q ss_pred CeEEEEEcCC--CCE-EEEEECCCcEEEEeC-CCCe----eeEeeeC-----------------CCccEEEEEEcCCCCE
Q 006220 549 MILSLAMSPD--GRY-MASGDEDGTIMMWDL-ASGR----CVTPLMG-----------------HTSCVWTLAYSCEGSL 603 (656)
Q Consensus 549 ~i~~l~~sp~--g~~-L~s~~~dg~I~iwD~-~~~~----~~~~~~~-----------------h~~~V~~l~~s~~~~~ 603 (656)
....|.|..+ ..+ ++.+....+|..|-- ..++ .+..+.. -..-|+.|..|.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 3456777654 333 333334444554432 3332 2222211 0245789999999998
Q ss_pred EEEEE-CCCcEEEEeCCCCCce
Q 006220 604 LASGS-ADCTVKLWDVTTSTKV 624 (656)
Q Consensus 604 l~sgs-~Dg~I~iWd~~~~~~~ 624 (656)
|..++ .+|.|+.||+......
T Consensus 326 LYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp EEEEETTTTEEEEEE-SSTTS-
T ss_pred EEEEcccCCcEEEEecCCCCCC
Confidence 87666 6899999999876543
No 430
>PRK13684 Ycf48-like protein; Provisional
Probab=94.67 E-value=3.1 Score=43.68 Aligned_cols=149 Identities=15% Similarity=0.103 Sum_probs=87.2
Q ss_pred CccEEEEEEecCCCEEEEEECCCcEEE-EECCCCc-eeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeE
Q 006220 463 NYPVWDVQFNPQGHYFASSSHDRTARI-WSMDRIQ-PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECV 540 (656)
Q Consensus 463 ~~~V~~l~~sp~~~~l~sgs~Dg~i~l-wd~~~~~-~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~ 540 (656)
...+.++.+.|++.+++++. .|.+.. ++ +.++ -..........+.++.+.++++.+++| ..|.+++=....|..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 45688999999887665554 465443 22 2222 222223445678999999998877765 4576654333444332
Q ss_pred EEEec----CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeC---CCccEEEEEEcCCCCEEEEEECCCcE
Q 006220 541 RIFIG----HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMG---HTSCVWTLAYSCEGSLLASGSADCTV 613 (656)
Q Consensus 541 ~~~~~----h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~---h~~~V~~l~~s~~~~~l~sgs~Dg~I 613 (656)
..... ....+..+.+.|++..++++ .+|.|. .....|+.-..... -....+.+.|..+++.++ .+..|.|
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~i 325 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVL 325 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceE
Confidence 22111 12357889999987765554 567554 44455554443322 223577888876666555 5567888
Q ss_pred EEEe
Q 006220 614 KLWD 617 (656)
Q Consensus 614 ~iWd 617 (656)
--|+
T Consensus 326 l~~~ 329 (334)
T PRK13684 326 LRYV 329 (334)
T ss_pred EEec
Confidence 7665
No 431
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.60 E-value=1.8 Score=49.20 Aligned_cols=174 Identities=14% Similarity=0.115 Sum_probs=98.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEE
Q 006220 350 THNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASF 429 (656)
Q Consensus 350 ~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 429 (656)
-.+.++|+.= ..+++++ ..+.|.||+........... +..............+... ... ...| .|+.+..
T Consensus 39 fKNNLtalsq---~n~LFiA-~~s~I~Vy~~d~l~~~p~~~--p~~~~~t~p~~~~~~D~~~-s~~-p~PH--tIN~i~v 108 (717)
T PF08728_consen 39 FKNNLTALSQ---RNLLFIA-YQSEIYVYDPDGLTQLPSRK--PCLRFDTKPEFTSTPDRLI-STW-PFPH--TINFIKV 108 (717)
T ss_pred cccceeEEec---CCEEEEE-ECCEEEEEecCCcccccccc--cccccccCccccccccccc-cCC-CCCc--eeeEEEe
Confidence 3445555542 6778777 57899999987643321100 0000000000000000000 000 1223 3444444
Q ss_pred cc--CCCEEEEEeCCCeEEEEeccC-------C----c---------eeEEeeCCCccEEEEEEe--cCCCEEEEEECCC
Q 006220 430 SP--LGDFILSSSADTTIRLWSTKL-------N----A---------NLVCYKGHNYPVWDVQFN--PQGHYFASSSHDR 485 (656)
Q Consensus 430 sp--d~~~L~s~s~Dg~I~lwd~~~-------~----~---------~~~~~~~h~~~V~~l~~s--p~~~~l~sgs~Dg 485 (656)
.. ....|+.|..||.|.+|.+++ . . +...+. ....+|+++++ ...+++|+++...
T Consensus 109 ~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~ 187 (717)
T PF08728_consen 109 GDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQ 187 (717)
T ss_pred cccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCc
Confidence 33 446899999999999997531 0 0 111222 24579999999 7888899998888
Q ss_pred cEEEEECCCC--c-eeEEecCCCCCeeEEEEcCCC---C---EEEEEECCCcEEEEeC
Q 006220 486 TARIWSMDRI--Q-PLRIMAGHLSDVDCVRWHINC---N---YIATGSSDKTVRLWDV 534 (656)
Q Consensus 486 ~i~lwd~~~~--~-~~~~~~~~~~~V~~v~~~p~~---~---~l~tgs~dg~V~iwd~ 534 (656)
.|.||-.... + ....-..+...|-+|+|-++. . .+++++-.|.+.+|++
T Consensus 188 ~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 188 EVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888765431 1 111111355678899997643 2 7888899999999887
No 432
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.47 E-value=1 Score=50.70 Aligned_cols=113 Identities=16% Similarity=0.169 Sum_probs=75.2
Q ss_pred CCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe-cCCCCeEEEEEc--CCCCEEEEEECCCcEEEEeCC-----
Q 006220 506 SDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI-GHRSMILSLAMS--PDGRYMASGDEDGTIMMWDLA----- 577 (656)
Q Consensus 506 ~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~-~h~~~i~~l~~s--p~g~~L~s~~~dg~I~iwD~~----- 577 (656)
....-+.-+.-++.-++.+....+.|||.+.+.....-. ...+.|..+.|. |+|+.+++.|-.+.|.++--.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 344444445544444455555689999999887543322 346789999986 588999988889999998531
Q ss_pred ----CCeeeEee--eCCC-ccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 578 ----SGRCVTPL--MGHT-SCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 578 ----~~~~~~~~--~~h~-~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
+...+..+ ..|+ .+|.+..|.++|.+++.+ ++.+.|+|-.-
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~~ 157 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKWL 157 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCCc
Confidence 12333333 3455 689999999999766654 34678877533
No 433
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=94.14 E-value=0.11 Score=50.14 Aligned_cols=169 Identities=14% Similarity=0.215 Sum_probs=104.8
Q ss_pred chHHHHHHHHHHHHhcCccHHHHHHHHHHhcCCCCCCCCCCCCCCch-hhcccccccccccCChhhHHHHHHHHHHHHhc
Q 006220 2 DELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDP-ELSKFFRTFSESEDGPARYQDEYSKLRSWTYS 80 (656)
Q Consensus 2 ~~~~~~~~v~~yl~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (656)
..+|+|++|++||---||..+-+.|..|+....+...+.. +.+- .|...| . -.+...|..++.+---.
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~---~~eR~~Ir~~I-----~---~G~Ie~Aie~in~l~Pe 93 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDS---MDERLQIRRAI-----E---EGQIEEAIEKVNQLNPE 93 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhh---HhHHHHHHHHH-----H---hccHHHHHHHHHHhChH
Confidence 5689999999999999999999999999887653111100 0000 111111 1 11344555555543322
Q ss_pred cccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhH---HhhHHHHHHHhcCCChhhhccCHHHHHhhcCc
Q 006220 81 SLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHE---MMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSK 157 (656)
Q Consensus 81 sld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k 157 (656)
-||.-+ .|.|=+-..-+++||..|..++|-.|+..--.-+. ..+.+++++.-.+---+.-+..|.+. +.+..
T Consensus 94 iLd~n~----~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~-l~~~s 168 (228)
T KOG2659|consen 94 ILDTNR----ELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAE-LLSQS 168 (228)
T ss_pred HHccch----hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHH-HHHHH
Confidence 233222 26777778889999999999999999988655542 13566666633332222334444444 55666
Q ss_pred eEEEEchhhHHHHHHHHhhCCcchHhHhh
Q 006220 158 VNIKICQYSYELLLQYLHKTQSTKMLGII 186 (656)
Q Consensus 158 ~~v~~~~~~~~~l~~~l~~~~~~~~~~i~ 186 (656)
|+-++....-.-++.+.+......|..|+
T Consensus 169 ~R~kvA~~vN~aiL~~~~~~~~~~l~~ll 197 (228)
T KOG2659|consen 169 LRQKVASEVNSAILASQEHESEPKLPFLL 197 (228)
T ss_pred HHHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 77777777777777777766555666665
No 434
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=1.9 Score=41.07 Aligned_cols=172 Identities=16% Similarity=0.127 Sum_probs=98.8
Q ss_pred CCCEEEEEeC--CCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEE-CCCcEEEEECCCCceeEEecCCCCCe
Q 006220 432 LGDFILSSSA--DTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSS-HDRTARIWSMDRIQPLRIMAGHLSDV 508 (656)
Q Consensus 432 d~~~L~s~s~--Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs-~Dg~i~lwd~~~~~~~~~~~~~~~~V 508 (656)
+|.++.+.+. ...|++||+.+++.+...+-....+..=-...-|.+|..-. .+|....+|.++.+.+..+.- .+.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcc
Confidence 4455666554 34699999999887765443211222111111244443333 688999999998887766652 2333
Q ss_pred eEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEe--cCCCCe---EEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeE
Q 006220 509 DCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFI--GHRSMI---LSLAMSPDGRYMASGDEDGTIMMWDLASGRCVT 583 (656)
Q Consensus 509 ~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~--~h~~~i---~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~ 583 (656)
..++ .++..|+.++...+++.-|..+.....+.. ....+| +-+.|- +|...|-.-.+..|...|..+|+.+.
T Consensus 134 WgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 134 WGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 3333 355567777666778887776644333222 112232 233343 56555555556666667777777665
Q ss_pred eee------------CCCccEEEEEEcCCC-CEEEEE
Q 006220 584 PLM------------GHTSCVWTLAYSCEG-SLLASG 607 (656)
Q Consensus 584 ~~~------------~h~~~V~~l~~s~~~-~~l~sg 607 (656)
.+. .|..-.+.+++.|++ +++++|
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 442 244567789998877 455555
No 435
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.07 E-value=10 Score=40.88 Aligned_cols=147 Identities=12% Similarity=0.129 Sum_probs=81.4
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc----CC-CEE
Q 006220 362 DGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP----LG-DFI 436 (656)
Q Consensus 362 dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp----d~-~~L 436 (656)
+...+++|+..|.++||+-...... .........-..||..+..-. .. ..|
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~------------------------~~~lllE~~l~~PILqv~~G~F~s~~~~~~L 91 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQ------------------------PEDLLLETQLKDPILQVECGKFVSGSEDLQL 91 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCC------------------------CccEEEEEecCCcEEEEEeccccCCCCcceE
Confidence 4568999999999999996431110 001111222345666665432 11 223
Q ss_pred EEEeCCCeEEEEeccCC--c-------eeEEeeCC--CccEEEEEEecC-----CCEEEEEECCCcEEEEECCCCceeEE
Q 006220 437 LSSSADTTIRLWSTKLN--A-------NLVCYKGH--NYPVWDVQFNPQ-----GHYFASSSHDRTARIWSMDRIQPLRI 500 (656)
Q Consensus 437 ~s~s~Dg~I~lwd~~~~--~-------~~~~~~~h--~~~V~~l~~sp~-----~~~l~sgs~Dg~i~lwd~~~~~~~~~ 500 (656)
+. =.-..+.+|.+... . .+.....| ....+.+++.|- ..++.+-+-||.+.+++-+...-.+.
T Consensus 92 aV-LhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~ 170 (418)
T PF14727_consen 92 AV-LHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRF 170 (418)
T ss_pred EE-ecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEE
Confidence 33 33355666665211 1 11111222 233445555552 35788889999999999876544444
Q ss_pred ecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220 501 MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDV 534 (656)
Q Consensus 501 ~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~ 534 (656)
+.+ .--...+.|.+....+++++.+..+.-|..
T Consensus 171 lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 171 LPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred cCC-CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 443 233445667777777777777666666643
No 436
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.76 E-value=2.7 Score=45.12 Aligned_cols=143 Identities=13% Similarity=0.128 Sum_probs=89.7
Q ss_pred cCCCEE-EEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCC-------CEEEEEECCCcEEEEECCCCc-eeEEe
Q 006220 431 PLGDFI-LSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQG-------HYFASSSHDRTARIWSMDRIQ-PLRIM 501 (656)
Q Consensus 431 pd~~~L-~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~-------~~l~sgs~Dg~i~lwd~~~~~-~~~~~ 501 (656)
.+..++ ..|+.-..++-.|+..|+.+.....|..- -+.|.|.. ..-++|-.+..|.-.|.+-.. .+...
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence 344444 35555566777888888888888877654 47777742 123344455666656654322 22111
Q ss_pred c----CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 502 A----GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (656)
Q Consensus 502 ~----~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~ 577 (656)
. .......|..- ..+.|+|+||..|-||+||.-.-.....+.+-...|..|..+.+|+++++.+. ..+.+-|++
T Consensus 555 esKdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 555 ESKDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred eehhcccccccccccc-ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 1 11122223222 34569999999999999996544444455666778999999999998887664 567777764
No 437
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.73 E-value=1.9 Score=48.67 Aligned_cols=109 Identities=12% Similarity=0.060 Sum_probs=72.5
Q ss_pred EEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEec-CCCCCeeEEEEc--CCCCEEEEEECCCcEEEEeCC-----C-
Q 006220 466 VWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMA-GHLSDVDCVRWH--INCNYIATGSSDKTVRLWDVS-----S- 536 (656)
Q Consensus 466 V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~-~~~~~V~~v~~~--p~~~~l~tgs~dg~V~iwd~~-----~- 536 (656)
..-+.-+.-+..-++-+...++.|||.+.+.....-. ...+.|..+.|. |+++.+++.+-.+.|.+|--. +
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 3344444444444444455689999998876433222 346789999997 789999988889999998542 1
Q ss_pred ---CeeEEEE--ecCC-CCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220 537 ---GECVRIF--IGHR-SMILSLAMSPDGRYMASGDEDGTIMMWDL 576 (656)
Q Consensus 537 ---~~~~~~~--~~h~-~~i~~l~~sp~g~~L~s~~~dg~I~iwD~ 576 (656)
...++.+ ..|+ .+|.+..|.++|.+++.+| +.+.|+|-
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 1233322 3344 6899999999997776554 57888874
No 438
>PHA02790 Kelch-like protein; Provisional
Probab=93.73 E-value=3 Score=46.26 Aligned_cols=139 Identities=12% Similarity=0.019 Sum_probs=65.1
Q ss_pred CCCEEEEEeCC--CeEEEEeccCCceeE--EeeCCCccEEEEEEecCCCEEEEEECCC---cEEEEECCCCceeEEecC-
Q 006220 432 LGDFILSSSAD--TTIRLWSTKLNANLV--CYKGHNYPVWDVQFNPQGHYFASSSHDR---TARIWSMDRIQPLRIMAG- 503 (656)
Q Consensus 432 d~~~L~s~s~D--g~I~lwd~~~~~~~~--~~~~h~~~V~~l~~sp~~~~l~sgs~Dg---~i~lwd~~~~~~~~~~~~- 503 (656)
++...+.|+.+ .++..||..+++-.. .+....... +++ .-+|...+.||.++ ++..||.++.+-...-..
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~ 395 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY 395 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence 46666666653 357778865443211 111111111 122 22677778887653 466788765433221110
Q ss_pred -CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEE--EecCCCCeEEEEEcCCCCEEEEEECC-----CcEEEEe
Q 006220 504 -HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRI--FIGHRSMILSLAMSPDGRYMASGDED-----GTIMMWD 575 (656)
Q Consensus 504 -~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~--~~~h~~~i~~l~~sp~g~~L~s~~~d-----g~I~iwD 575 (656)
.......+ .-++...+.| |.+.+||..+++-... +.........+. -+|+..+.||.+ ..|..||
T Consensus 396 ~~r~~~~~~--~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd 468 (480)
T PHA02790 396 YPHYKSCAL--VFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYN 468 (480)
T ss_pred CccccceEE--EECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEE
Confidence 11111122 2345555555 4577899876644322 111111222222 256777777654 2355555
Q ss_pred CCCC
Q 006220 576 LASG 579 (656)
Q Consensus 576 ~~~~ 579 (656)
..++
T Consensus 469 ~~~~ 472 (480)
T PHA02790 469 NRTY 472 (480)
T ss_pred CCCC
Confidence 5443
No 439
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.58 E-value=1.4 Score=50.87 Aligned_cols=94 Identities=14% Similarity=0.233 Sum_probs=57.8
Q ss_pred CccEEEEEEecCCCEEEEEECCCcEEEEECCC-CceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEE
Q 006220 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDR-IQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVR 541 (656)
Q Consensus 463 ~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~-~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~ 541 (656)
...|..|.++|+|.+++..|..| |.|..+.. ...-..+.+....|.|-.+.-+..++ .
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~-~------------------- 142 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF-T------------------- 142 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhc-c-------------------
Confidence 34688899999999999988755 44444322 11112233333334433332211111 1
Q ss_pred EEecCCCCeEEEEEcCC---CCEEEEEECCCcEEEEeCCCC
Q 006220 542 IFIGHRSMILSLAMSPD---GRYMASGDEDGTIMMWDLASG 579 (656)
Q Consensus 542 ~~~~h~~~i~~l~~sp~---g~~L~s~~~dg~I~iwD~~~~ 579 (656)
..+...|..+.|+|. +..|+.-+.|+++++||+...
T Consensus 143 --~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 143 --SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred --CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 123456888999996 579999999999999999653
No 440
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.46 E-value=2.5 Score=44.75 Aligned_cols=120 Identities=12% Similarity=0.145 Sum_probs=81.9
Q ss_pred cCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCcee----EEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCC
Q 006220 419 GHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANL----VCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDR 494 (656)
Q Consensus 419 ~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~----~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~ 494 (656)
...|+|.++.||+|++.+++--.+++|.+++....+.. ...+..+..|.+.+|+.+ .-+|..+..| +-+|.+..
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence 34579999999999999999999999999997533322 222334556899999865 4455555444 56665543
Q ss_pred -CceeEEecCCCCCeeEEEEcCCCCEEEEEE--CCCcEEEEeCCCCeeE
Q 006220 495 -IQPLRIMAGHLSDVDCVRWHINCNYIATGS--SDKTVRLWDVSSGECV 540 (656)
Q Consensus 495 -~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs--~dg~V~iwd~~~~~~~ 540 (656)
...++....|.-.|+...|+++.+.++.++ ..+++.=+-++++...
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~v~ 190 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGTMS 190 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeeceee
Confidence 345666778888999999999887665443 3444444555554433
No 441
>PRK13684 Ycf48-like protein; Provisional
Probab=93.33 E-value=12 Score=39.27 Aligned_cols=112 Identities=18% Similarity=0.192 Sum_probs=65.0
Q ss_pred CCCeeEEEEcCCCCEEEEEECCCcEEE-EeCCCCe-eEEEEecCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeee
Q 006220 505 LSDVDCVRWHINCNYIATGSSDKTVRL-WDVSSGE-CVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCV 582 (656)
Q Consensus 505 ~~~V~~v~~~p~~~~l~tgs~dg~V~i-wd~~~~~-~~~~~~~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~ 582 (656)
...+.++.+.|++.++++|. .|.+.. +|- .++ -......-...++++.+.++++.++++ ..|.+.+=....|..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 45688999999987776664 454432 221 222 222222334678999999999877665 4576653233444332
Q ss_pred EeeeC----CCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 583 TPLMG----HTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (656)
Q Consensus 583 ~~~~~----h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~ 621 (656)
..... ....+.++.+.+++..++ ++.+|.|. .....+
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G 289 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGG 289 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCC
Confidence 22221 124578899998877555 45567554 344433
No 442
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.31 E-value=1.9 Score=46.19 Aligned_cols=143 Identities=16% Similarity=0.192 Sum_probs=92.0
Q ss_pred CCCEE-EEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCC-------EEEEEECCCcEEEEeCCC-CeeEEEEe
Q 006220 474 QGHYF-ASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCN-------YIATGSSDKTVRLWDVSS-GECVRIFI 544 (656)
Q Consensus 474 ~~~~l-~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~-------~l~tgs~dg~V~iwd~~~-~~~~~~~~ 544 (656)
+.+++ ..|+....++-.|++.++.+.....|.. | .|.|.|... .-++|-++..|.-.|.+- |..+....
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCc-c-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 44443 4455667788889999999988887754 3 677777432 234455666666667663 33322221
Q ss_pred cCCCCeEEEEEcC----CCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 545 GHRSMILSLAMSP----DGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 545 ~h~~~i~~l~~sp----~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
....++.-.||. ...++|+|+..|-|++||.-.-+.-..+.+....|..+..+.+|.++++.|. ..+.+-|+.-
T Consensus 556 -sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~i 633 (776)
T COG5167 556 -SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVPI 633 (776)
T ss_pred -ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEeccc
Confidence 122233333333 3469999999999999995333333345566788999999999998877664 4677777653
No 443
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.00 E-value=6.9 Score=37.75 Aligned_cols=138 Identities=14% Similarity=0.250 Sum_probs=80.8
Q ss_pred CEEEEEeCCCeEEEEeccCC--ceeEEeeCCCccEEEEEEecCCCEEEEEECC---C---cEEEE---ECC--CCceeE-
Q 006220 434 DFILSSSADTTIRLWSTKLN--ANLVCYKGHNYPVWDVQFNPQGHYFASSSHD---R---TARIW---SMD--RIQPLR- 499 (656)
Q Consensus 434 ~~L~s~s~Dg~I~lwd~~~~--~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~D---g---~i~lw---d~~--~~~~~~- 499 (656)
+.|+.+...+.|.+|++... .....+.. -+.|..+.++..|+|++|-=.+ . .+|+| ... ..++++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 45555466678999998833 33445553 4789999999999999996422 2 56665 221 223332
Q ss_pred EecC---------------------CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee-EE-----EEe----cC-C
Q 006220 500 IMAG---------------------HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-VR-----IFI----GH-R 547 (656)
Q Consensus 500 ~~~~---------------------~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~-~~-----~~~----~h-~ 547 (656)
.+.| -...+.|++..|...-|+.|+ ++++.+|.+..+.. .. .|. .| .
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~ 186 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID 186 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence 1112 134577888888655566665 56888998765433 11 111 11 1
Q ss_pred C-CeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220 548 S-MILSLAMSPDGRYMASGDEDGTIMMWDL 576 (656)
Q Consensus 548 ~-~i~~l~~sp~g~~L~s~~~dg~I~iwD~ 576 (656)
+ ....+++. +.|+|..+. -.++++.+
T Consensus 187 ~~~p~~v~ic--~~yiA~~s~-~ev~Vlkl 213 (215)
T PF14761_consen 187 NFKPTQVAIC--EGYIAVMSD-LEVLVLKL 213 (215)
T ss_pred CceEEEEEEE--eeEEEEecC-CEEEEEEE
Confidence 1 23445554 667777764 45666554
No 444
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.68 E-value=3.5 Score=49.68 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=45.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCc
Q 006220 546 HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTK 623 (656)
Q Consensus 546 h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~ 623 (656)
+..++.+..+...+..+ .+..-+.+.+|+.........+.... ..++.++..++++..||.+.+||+..++.
T Consensus 197 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 197 IEYESLQVLYYSPTKIL-IGFNRGLVVIKDRASKYVQSAYLPNG-----QLESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred cccccceeeeecCCCcc-eeeeeeeeeehhcccccchhhccccc-----ccCccCCceEEEEEecCCEEeeecCCCce
Confidence 44455555554443333 33445677778765544333332221 11278899999999999999999999865
No 445
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.29 E-value=4.8 Score=45.98 Aligned_cols=142 Identities=11% Similarity=0.126 Sum_probs=90.0
Q ss_pred CCEEEEEeCCCeEEEEeccCCceeE------Eee----------------CCCccEEEEEEec--CCCEEEEEECCCcEE
Q 006220 433 GDFILSSSADTTIRLWSTKLNANLV------CYK----------------GHNYPVWDVQFNP--QGHYFASSSHDRTAR 488 (656)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~~~------~~~----------------~h~~~V~~l~~sp--~~~~l~sgs~Dg~i~ 488 (656)
..+++.+. .+.|.||+.+.-.... .+. .....|+-|.... +...|+.|..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 55666655 5789999876332211 000 0112344444433 456788999999999
Q ss_pred EEECCCC--------------------ceeEEecCCCCCeeEEEEc--CCCCEEEEEECCCcEEEEeCCCC--eeE-EEE
Q 006220 489 IWSMDRI--------------------QPLRIMAGHLSDVDCVRWH--INCNYIATGSSDKTVRLWDVSSG--ECV-RIF 543 (656)
Q Consensus 489 lwd~~~~--------------------~~~~~~~~~~~~V~~v~~~--p~~~~l~tgs~dg~V~iwd~~~~--~~~-~~~ 543 (656)
+|.+++. +|...+. -...+.++++| ...++||+++....|.+|-.... +.. ..-
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 9976310 1222222 23468889998 88889999998888888765432 111 111
Q ss_pred ecCCCCeEEEEEcCCC---C---EEEEEECCCcEEEEeC
Q 006220 544 IGHRSMILSLAMSPDG---R---YMASGDEDGTIMMWDL 576 (656)
Q Consensus 544 ~~h~~~i~~l~~sp~g---~---~L~s~~~dg~I~iwD~ 576 (656)
..|...|.+|+|-++. . +|++++-.|.+.+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1356678999998743 2 7888999999999988
No 446
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.69 E-value=17 Score=35.17 Aligned_cols=137 Identities=15% Similarity=0.184 Sum_probs=78.6
Q ss_pred CEEEEEECCCcEEEEECC--CCceeEEecCCCCCeeEEEEcCCCCEEEEEECC------CcEEEE---eCC--CCeeEE-
Q 006220 476 HYFASSSHDRTARIWSMD--RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSD------KTVRLW---DVS--SGECVR- 541 (656)
Q Consensus 476 ~~l~sgs~Dg~i~lwd~~--~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~d------g~V~iw---d~~--~~~~~~- 541 (656)
..++.+...+.|.+|++. ...+...|. .-+.|..+.++..|+||+|--.+ ..+|+| ... ...+++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 344444666889999988 334455555 44889999999999999995322 256764 322 112222
Q ss_pred EEecC---------------------CCCeEEEEEcCC-CCEEEEEECCCcEEEEeCCCCee-eE-----eee-----CC
Q 006220 542 IFIGH---------------------RSMILSLAMSPD-GRYMASGDEDGTIMMWDLASGRC-VT-----PLM-----GH 588 (656)
Q Consensus 542 ~~~~h---------------------~~~i~~l~~sp~-g~~L~s~~~dg~I~iwD~~~~~~-~~-----~~~-----~h 588 (656)
.+.|| ..++.+++..|- |++++ |+ ++++.+|.+..... .. .+. .|
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~ 185 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-GC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHI 185 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEEEEEEecccccEEechhhhhhee
Confidence 11221 335677887774 55554 43 46899998765433 11 111 11
Q ss_pred C-ccEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 006220 589 T-SCVWTLAYSCEGSLLASGSADCTVKLWDV 618 (656)
Q Consensus 589 ~-~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~ 618 (656)
. -.+..+++. +.++|..+ +-.+++..+
T Consensus 186 ~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 186 DNFKPTQVAIC--EGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred cCceEEEEEEE--eeEEEEec-CCEEEEEEE
Confidence 1 224455554 45676665 446666654
No 447
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=90.66 E-value=20 Score=35.97 Aligned_cols=181 Identities=10% Similarity=0.048 Sum_probs=108.5
Q ss_pred eEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeecCccCEEEEEEcc
Q 006220 354 LNCASISQDGSLVAGGFSDS--SLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQGHSGPVYSASFSP 431 (656)
Q Consensus 354 V~~l~fs~dg~~La~g~~dg--~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 431 (656)
...+.|..+|.++-+.+.-| .|+.+|+.+........ +. ..----.+...
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~--------------------------l~-~~~FgEGit~~- 98 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVP--------------------------LP-PRYFGEGITIL- 98 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE---------------------------T-TT--EEEEEEE-
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEE--------------------------CC-ccccceeEEEE-
Confidence 56777877888877776655 68999987643211100 00 00001112222
Q ss_pred CCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCC-----CC
Q 006220 432 LGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGH-----LS 506 (656)
Q Consensus 432 d~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~-----~~ 506 (656)
+++.....-.++...+||..+.+.+..+.- ...-|.++ .++..|+.......++++|..+.+..+.+... ..
T Consensus 99 ~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~ 175 (264)
T PF05096_consen 99 GDKLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVS 175 (264)
T ss_dssp TTEEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE--
T ss_pred CCEEEEEEecCCeEEEEccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECC
Confidence 122333334578999999999888877753 45778888 36777777777788999999888777766532 22
Q ss_pred CeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec------------C---CCCeEEEEEcCCCCEEEEEE
Q 006220 507 DVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG------------H---RSMILSLAMSPDGRYMASGD 566 (656)
Q Consensus 507 ~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~------------h---~~~i~~l~~sp~g~~L~s~~ 566 (656)
.++-+.|. +|...|-.-....|...|..+|.++..+.- + ..-.+.|++.|.++.|...|
T Consensus 176 ~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 176 NLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp -EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 35556665 565555555667888899999998876631 1 24578999998766555544
No 448
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=90.59 E-value=20 Score=39.69 Aligned_cols=149 Identities=16% Similarity=0.090 Sum_probs=78.3
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCC---CeeEEEEcCCCCEEEEEEC-------------CCcEEEE
Q 006220 469 VQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLS---DVDCVRWHINCNYIATGSS-------------DKTVRLW 532 (656)
Q Consensus 469 l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~---~V~~v~~~p~~~~l~tgs~-------------dg~V~iw 532 (656)
+...++|++++..+ +.++.+|.. ++.+........ .-..+..-|+|++|+.+.. .-.|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 66778888776555 778888875 444444332211 1245667799999988872 2246667
Q ss_pred eCCCCeeEEEEec--CC-------------------------CCeEEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeeEe
Q 006220 533 DVSSGECVRIFIG--HR-------------------------SMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTP 584 (656)
Q Consensus 533 d~~~~~~~~~~~~--h~-------------------------~~i~~l~~sp-~g~~L~s~~~dg~I~iwD~~~~~~~~~ 584 (656)
| .+|+.+..+.. |- -.+.++.+.+ ++.+|+|+-.-..|...|.++++....
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi 308 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI 308 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence 7 78888776531 10 1378899988 556666665556888899888887777
Q ss_pred eeCCCcc-------EEE---------------EEEcCCCCEEEEEECCC---cEEEEeCCCCC
Q 006220 585 LMGHTSC-------VWT---------------LAYSCEGSLLASGSADC---TVKLWDVTTST 622 (656)
Q Consensus 585 ~~~h~~~-------V~~---------------l~~s~~~~~l~sgs~Dg---~I~iWd~~~~~ 622 (656)
+-.|.+. +.. ..| .-|++-+.--.+| .|.++|=....
T Consensus 309 lg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~-~~gQH~~~~~~~g~~~~l~vFDNg~~r 370 (477)
T PF05935_consen 309 LGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDW-FWGQHTAHLIPDGPQGNLLVFDNGNGR 370 (477)
T ss_dssp ES-STT--TTTGGGB-EEB-TTS-B-EBSSSS-----SS-EEEEE-TTS---SEEEEE--TTG
T ss_pred eCCCCCCCcccchheeeeeccCCceeeccCCCCcc-cccccceEEcCCCCeEEEEEEECCCCC
Confidence 6544311 000 111 1255666666777 88888865544
No 449
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.32 E-value=7.9 Score=41.94 Aligned_cols=97 Identities=16% Similarity=0.141 Sum_probs=62.1
Q ss_pred cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEe
Q 006220 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIM 501 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~ 501 (656)
-.|+.+..++.|..++-++.+|.+..+=.+.+..-..+......|.|-.++-+. .|++.+
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~-~~ftss------------------- 163 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE-RFFTSS------------------- 163 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc-eeeccC-------------------
Confidence 468889999999999999999866555444444444455444445554444322 222221
Q ss_pred cCCCCCeeEEEEcCCC---CEEEEEECCCcEEEEeCCCCeeE
Q 006220 502 AGHLSDVDCVRWHINC---NYIATGSSDKTVRLWDVSSGECV 540 (656)
Q Consensus 502 ~~~~~~V~~v~~~p~~---~~l~tgs~dg~V~iwd~~~~~~~ 540 (656)
..-.+..++|||++ ..|..-++|.+||+||......+
T Consensus 164 --~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 164 --TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred --CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 11234567888865 67778888999999998765544
No 450
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.31 E-value=20 Score=40.71 Aligned_cols=199 Identities=15% Similarity=0.059 Sum_probs=100.3
Q ss_pred cCEEEEEEccCCCE-EEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEE
Q 006220 422 GPVYSASFSPLGDF-ILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI 500 (656)
Q Consensus 422 ~~V~~l~~spd~~~-L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~ 500 (656)
+..-++..+|..-. +. +.--.|+|++.. |..+....-...++-.+.|+.+ .-+++...+|++++|++-.......
T Consensus 44 gGpIAV~r~p~~~~~~~--~a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~~ 119 (829)
T KOG2280|consen 44 GGPIAVTRSPSKLVPLY--SARPYIRIFNIS-GQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIESN 119 (829)
T ss_pred CCceEEEeccccccccc--ccceeEEEEecc-ccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhccc
Confidence 44445666653211 11 333468888876 5554443333337778999965 4677778999999999754322111
Q ss_pred -e--cCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEec---CCCCeEEEEEcCCCC---EEEEEE-CCC-
Q 006220 501 -M--AGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIG---HRSMILSLAMSPDGR---YMASGD-EDG- 569 (656)
Q Consensus 501 -~--~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~---h~~~i~~l~~sp~g~---~L~s~~-~dg- 569 (656)
+ ......|..+.+..+|-.+.+ .+|.+.+-.-......+.+.. ...+.+|-...++++ .++-.. ..|
T Consensus 120 svg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~ 197 (829)
T KOG2280|consen 120 SVGFESQMSDIVECRFFHNGVAVLT--VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGL 197 (829)
T ss_pred ccccccccCceeEEEEecCceEEEe--cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhh
Confidence 1 122233444444446644433 455555443222222222221 111222222222221 111111 000
Q ss_pred cEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCCCCceeec
Q 006220 570 TIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKT 627 (656)
Q Consensus 570 ~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~~~~~~~ 627 (656)
.+..-+....+. ..+....+.+..++.||+.++|+--..+|.|.+-+++..+.....
T Consensus 198 ~~~q~~~~~~q~-~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~ 254 (829)
T KOG2280|consen 198 HICQVEESRVQL-HALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEF 254 (829)
T ss_pred cccceecccccc-cccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhcc
Confidence 011111111111 112222356788999999999999999999999888877665544
No 451
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.07 E-value=21 Score=38.43 Aligned_cols=146 Identities=13% Similarity=0.120 Sum_probs=83.5
Q ss_pred cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCce--eEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCce--
Q 006220 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNAN--LVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP-- 497 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~--~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~-- 497 (656)
+....+..++++.+++.+..-.-++-||- +.. ...-......+..+.|.+++..++++ .+|.+ +|..+.+..
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~ 314 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEE 314 (398)
T ss_pred cceeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccc
Confidence 33555667788877776654333333443 222 11122234568899999998877665 55654 344444432
Q ss_pred ---eEEecC--CCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEE---ecCCCCeEEEEEcCCCCEEEEEECCC
Q 006220 498 ---LRIMAG--HLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIF---IGHRSMILSLAMSPDGRYMASGDEDG 569 (656)
Q Consensus 498 ---~~~~~~--~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~---~~h~~~i~~l~~sp~g~~L~s~~~dg 569 (656)
...... ....+..+.|.+++..+++| ..|.+.... ..|+.-... ..-....+.+.|.++++.+++| .+|
T Consensus 315 ~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G 391 (398)
T PLN00033 315 DFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDG 391 (398)
T ss_pred ccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCc
Confidence 222221 22358889998877665555 667766654 344432222 2224568899998876666655 577
Q ss_pred cEEEE
Q 006220 570 TIMMW 574 (656)
Q Consensus 570 ~I~iw 574 (656)
.|.-|
T Consensus 392 ~il~~ 396 (398)
T PLN00033 392 VLLRY 396 (398)
T ss_pred EEEEe
Confidence 76554
No 452
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.05 E-value=0.039 Score=58.35 Aligned_cols=143 Identities=17% Similarity=0.233 Sum_probs=99.4
Q ss_pred EEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEE-EECCCcEEEEeCCCCeeEEEEecC
Q 006220 468 DVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIAT-GSSDKTVRLWDVSSGECVRIFIGH 546 (656)
Q Consensus 468 ~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~t-gs~dg~V~iwd~~~~~~~~~~~~h 546 (656)
...|-|.+.-++.++.+..+..||-.... .... ...+....++|.-++..++. +-..+.+.+||+.+......-.+.
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~-~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg 116 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQV-ILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG 116 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcce-eccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence 56788888779999888888888854322 2222 23345566788877765544 556789999999765332211122
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcE
Q 006220 547 RSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTV 613 (656)
Q Consensus 547 ~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I 613 (656)
...-.-+.|++.+..++.|...|.+.|+...+.+.+..+-.|...+++++|.+.+. .+.++.|..+
T Consensus 117 ~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L 182 (615)
T KOG2247|consen 117 TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTL 182 (615)
T ss_pred cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHHH
Confidence 22222378999999999999999999999988877766655999999999999864 5555555443
No 453
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.87 E-value=22 Score=37.15 Aligned_cols=156 Identities=19% Similarity=0.263 Sum_probs=92.3
Q ss_pred CccEEEEEEecCCCEEEEEECCCc------EEEEECCC----CceeE-----EecCC--------CCCeeEEEEcCCCCE
Q 006220 463 NYPVWDVQFNPQGHYFASSSHDRT------ARIWSMDR----IQPLR-----IMAGH--------LSDVDCVRWHINCNY 519 (656)
Q Consensus 463 ~~~V~~l~~sp~~~~l~sgs~Dg~------i~lwd~~~----~~~~~-----~~~~~--------~~~V~~v~~~p~~~~ 519 (656)
-+.++.+.+.+++..+++.+.+|. ++.+++.. ...+. .+... .-+..++++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 345678888876667777777777 65555443 11111 11111 115568888778877
Q ss_pred EEEEECC------CcEEEEeCCCCeeEEEEe---------------cCCCCeEEEEEcCCCCEEEEEEC-----CC--c-
Q 006220 520 IATGSSD------KTVRLWDVSSGECVRIFI---------------GHRSMILSLAMSPDGRYMASGDE-----DG--T- 570 (656)
Q Consensus 520 l~tgs~d------g~V~iwd~~~~~~~~~~~---------------~h~~~i~~l~~sp~g~~L~s~~~-----dg--~- 570 (656)
+++.-.+ ..|+.++.. |.....+. ......-+|+++|+|+.|+++.+ |+ .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 7776666 788888866 66554441 12345788999999996666542 22 1
Q ss_pred ------EEE--EeCCC-CeeeEee----eC-----CCccEEEEEEcCCCCEEEEEE-----CCCcEEEEeCC
Q 006220 571 ------IMM--WDLAS-GRCVTPL----MG-----HTSCVWTLAYSCEGSLLASGS-----ADCTVKLWDVT 619 (656)
Q Consensus 571 ------I~i--wD~~~-~~~~~~~----~~-----h~~~V~~l~~s~~~~~l~sgs-----~Dg~I~iWd~~ 619 (656)
++| ||..+ +.....+ .. ....|..+.+-+++++|+--- ....++|+.+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 444 45444 3222222 22 346788999999998776532 23455555554
No 454
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.61 E-value=2.2 Score=41.84 Aligned_cols=69 Identities=14% Similarity=0.315 Sum_probs=52.7
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCCCeeeEee-------e-------CCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 555 MSPDGRYMASGDEDGTIMMWDLASGRCVTPL-------M-------GHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 555 ~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~-------~-------~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
+..++.+|++.+.+|.+++||+.+++.+..- . .....|.++.++.+|.-+++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4456889999999999999999998765432 1 2446789999998888777665 57889998765
Q ss_pred CCce
Q 006220 621 STKV 624 (656)
Q Consensus 621 ~~~~ 624 (656)
+.-.
T Consensus 97 ~~W~ 100 (219)
T PF07569_consen 97 GCWI 100 (219)
T ss_pred ceeE
Confidence 5433
No 455
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.44 E-value=10 Score=40.45 Aligned_cols=137 Identities=9% Similarity=0.073 Sum_probs=84.8
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEeccCCce--eEEe-eCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEE-
Q 006220 425 YSASFSPLGDFILSSSADTTIRLWSTKLNAN--LVCY-KGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI- 500 (656)
Q Consensus 425 ~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~--~~~~-~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~- 500 (656)
+.+-|...++. +.|...|.+.-|-+..... ...+ ....++|.++.||+|...+|+--.+++|.+++....++...
T Consensus 26 ngvFfDDaNkq-lfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 26 NGVFFDDANKQ-LFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred cceeeccCcce-EEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 34555543343 3344445566676553321 2222 23466999999999999999999999999999843333221
Q ss_pred ---ecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCC-CeeEEEEecCCCCeEEEEEcCCCCEEEE
Q 006220 501 ---MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSS-GECVRIFIGHRSMILSLAMSPDGRYMAS 564 (656)
Q Consensus 501 ---~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~-~~~~~~~~~h~~~i~~l~~sp~g~~L~s 564 (656)
.......|....|..+. -+|.-+.. -+.+|-+.. ...++....|...|.--.|.++.+.+.-
T Consensus 105 ~~~ck~k~~~IlGF~W~~s~-e~A~i~~~-G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL 170 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSST-EIAFITDQ-GIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILL 170 (657)
T ss_pred HHHhccCcceeEEEEEecCe-eEEEEecC-CeEEEEEchhhhhhhhhhhcccCccEEEEccccceEee
Confidence 12233458888998774 44444433 355665543 3445666677788888888887765443
No 456
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.28 E-value=1.2 Score=31.06 Aligned_cols=32 Identities=19% Similarity=0.323 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCC---CEEEEEECCCcEEEEeCCCC
Q 006220 548 SMILSLAMSPDG---RYMASGDEDGTIMMWDLASG 579 (656)
Q Consensus 548 ~~i~~l~~sp~g---~~L~s~~~dg~I~iwD~~~~ 579 (656)
+.|.++.|||+. .+|+.+-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468899999854 48888888899999999863
No 457
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=89.27 E-value=38 Score=37.08 Aligned_cols=106 Identities=10% Similarity=0.160 Sum_probs=60.9
Q ss_pred CccEEEEEEecCCCEEEEEECCCcEEEEECCCCce--eEEe----c-CCCCCeeEEEEcCCC------CEEEEEE-----
Q 006220 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQP--LRIM----A-GHLSDVDCVRWHINC------NYIATGS----- 524 (656)
Q Consensus 463 ~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~--~~~~----~-~~~~~V~~v~~~p~~------~~l~tgs----- 524 (656)
-..-|.|+|.|+|++|++--..|.|++++..+... +..+ . ........|++||+- .+|++..
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence 34568999999998777665569999998654432 1111 1 134668899999874 3444432
Q ss_pred -----CCCcEEEEeCCCC-----eeEEEEecC----CCCeEEEEEcCCCCEEEEEECC
Q 006220 525 -----SDKTVRLWDVSSG-----ECVRIFIGH----RSMILSLAMSPDGRYMASGDED 568 (656)
Q Consensus 525 -----~dg~V~iwd~~~~-----~~~~~~~~h----~~~i~~l~~sp~g~~L~s~~~d 568 (656)
....|.-|.+... .....+.+. ...-..|.|.|||.+.++.++.
T Consensus 109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1223444544311 111222211 1223468899999876665543
No 458
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.90 E-value=0.067 Score=56.63 Aligned_cols=137 Identities=10% Similarity=0.230 Sum_probs=96.5
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEE-EECCCcEEEEECCCCceeEEec
Q 006220 424 VYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFAS-SSHDRTARIWSMDRIQPLRIMA 502 (656)
Q Consensus 424 V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s-gs~Dg~i~lwd~~~~~~~~~~~ 502 (656)
-....|-|.+..++.++.+..+..||-. ++...... .++...+++|..++..++. +-..+.+.+||+.+......-.
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~ 114 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES 114 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence 3456788888778888888888999865 33332222 3445567888887776544 4567899999997654332222
Q ss_pred CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEE
Q 006220 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM 562 (656)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L 562 (656)
+....-.-+.|++.+..++.|...|.+++++..+.+.+...-.|...++++++.+.+..+
T Consensus 115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vi 174 (615)
T KOG2247|consen 115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVI 174 (615)
T ss_pred cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceee
Confidence 222333337889988899999999999999988776665554588899999999876543
No 459
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=88.88 E-value=27 Score=34.98 Aligned_cols=196 Identities=10% Similarity=0.085 Sum_probs=118.5
Q ss_pred cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEE-
Q 006220 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRI- 500 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~- 500 (656)
+.-+.++-.|||..-+++...|.|--.|-.+++....--+....-..|...|+|..-++-+.. -|.-.|-++....+.
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~ 140 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFP 140 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEee
Confidence 344667888899888888888888888888888766555555566678888888776654433 455555544332221
Q ss_pred --ecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCC-CCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 501 --MAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHR-SMILSLAMSPDGRYMASGDEDGTIMMWDLA 577 (656)
Q Consensus 501 --~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~-~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~ 577 (656)
............|.+.|+.-+|+... .---.|.. ...+++|.... ..-..|+..|+|..-++.-.++.|-..|..
T Consensus 141 lp~~~a~~nlet~vfD~~G~lWFt~q~G-~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~ 218 (353)
T COG4257 141 LPLEHADANLETAVFDPWGNLWFTGQIG-AYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPF 218 (353)
T ss_pred cccccCCCcccceeeCCCccEEEeeccc-cceecCcc-cCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccc
Confidence 11223457788899999988887632 11111111 11223333222 345678889999988887777778877876
Q ss_pred CCeeeEee--eCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 578 SGRCVTPL--MGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 578 ~~~~~~~~--~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
++..-..- ......-..+.-+|.|..-+|....+.+.-+|-..
T Consensus 219 ~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 219 AGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred cCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence 66321111 11122234455566777777766666666666544
No 460
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.56 E-value=2.6 Score=41.36 Aligned_cols=66 Identities=17% Similarity=0.266 Sum_probs=50.2
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCCCeeEEEE-------e-------cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 513 WHINCNYIATGSSDKTVRLWDVSSGECVRIF-------I-------GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (656)
Q Consensus 513 ~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~-------~-------~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~ 578 (656)
+..+++++++-+.+|.+++||+.+++++..- . .....|..+.++.+|.-|++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4567889999999999999999998765322 1 2446788888888888777665 57888898754
Q ss_pred C
Q 006220 579 G 579 (656)
Q Consensus 579 ~ 579 (656)
+
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 4
No 461
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=88.52 E-value=22 Score=38.65 Aligned_cols=32 Identities=19% Similarity=0.353 Sum_probs=25.8
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 590 SCVWTLAYSCEGSLLASGSADCTVKLWDVTTS 621 (656)
Q Consensus 590 ~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~~~ 621 (656)
..|.++...+..+.+++.+.+|.|.+|++..+
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 34889999998899999999999999999863
No 462
>PLN02193 nitrile-specifier protein
Probab=88.25 E-value=38 Score=37.48 Aligned_cols=145 Identities=8% Similarity=-0.017 Sum_probs=71.3
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCceeEEecC---CCCC-eeEEEEcCCCCEEEEEECCC-----cEEEEeCCCCee
Q 006220 474 QGHYFASSSHD-----RTARIWSMDRIQPLRIMAG---HLSD-VDCVRWHINCNYIATGSSDK-----TVRLWDVSSGEC 539 (656)
Q Consensus 474 ~~~~l~sgs~D-----g~i~lwd~~~~~~~~~~~~---~~~~-V~~v~~~p~~~~l~tgs~dg-----~V~iwd~~~~~~ 539 (656)
++..++.|+.+ ..+.+||+.+.+-...-.. .... -.+++. -++..++.|+.++ .+..||+.+.+-
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence 45666777654 3577888876543221111 0011 112222 2455666666543 467788876543
Q ss_pred EEEEe-----cCCCCeEEEEEcCCCCEEEEEECC----CcEEEEeCCCCeeeEeeeC---CC--ccEEEEEEcCCCCEEE
Q 006220 540 VRIFI-----GHRSMILSLAMSPDGRYMASGDED----GTIMMWDLASGRCVTPLMG---HT--SCVWTLAYSCEGSLLA 605 (656)
Q Consensus 540 ~~~~~-----~h~~~i~~l~~sp~g~~L~s~~~d----g~I~iwD~~~~~~~~~~~~---h~--~~V~~l~~s~~~~~l~ 605 (656)
...-. ...... .++ .-+++.++.++.+ ..+.+||+.+.+-...-.. .. ....++ .-++++++
T Consensus 307 ~~~~~~~~~~~~R~~~-~~~-~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~--~~~~~iyv 382 (470)
T PLN02193 307 FHCSTPGDSFSIRGGA-GLE-VVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA--AVGKHIVI 382 (470)
T ss_pred EeCCCCCCCCCCCCCc-EEE-EECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE--EECCEEEE
Confidence 32111 001111 122 2256777777655 4588999887653222110 11 111222 23567777
Q ss_pred EEECC--------------CcEEEEeCCCCCc
Q 006220 606 SGSAD--------------CTVKLWDVTTSTK 623 (656)
Q Consensus 606 sgs~D--------------g~I~iWd~~~~~~ 623 (656)
.|+.+ +.+.++|+.+.+-
T Consensus 383 ~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W 414 (470)
T PLN02193 383 FGGEIAMDPLAHVGPGQLTDGTFALDTETLQW 414 (470)
T ss_pred ECCccCCccccccCccceeccEEEEEcCcCEE
Confidence 77753 2477888776543
No 463
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.20 E-value=5.2 Score=43.25 Aligned_cols=29 Identities=10% Similarity=-0.174 Sum_probs=22.7
Q ss_pred CeeEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 507 DVDCVRWHINCNYIATGSSDKTVRLWDVS 535 (656)
Q Consensus 507 ~V~~v~~~p~~~~l~tgs~dg~V~iwd~~ 535 (656)
.|..+..++.|..++..+.+|.+.++=.+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~ 133 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPK 133 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchh
Confidence 36677888999999999999988776533
No 464
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=88.20 E-value=32 Score=34.89 Aligned_cols=151 Identities=16% Similarity=0.125 Sum_probs=93.8
Q ss_pred ccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCC--CccEEEEEEecCCCEEEEEECCCcEEEEECCCCcee
Q 006220 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGH--NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPL 498 (656)
Q Consensus 421 ~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h--~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~ 498 (656)
.+-+..+.++ +++...+..+.-+++.|+.+.........- .+--.++. -.|++..++..|.-+.+.|+.+.+..
T Consensus 86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~--vsGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVY--VSGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEE--ecCCEEEEeeccCcEEEEECCCCCCc
Confidence 4556677777 567777778888999999877654433211 12233333 35889988886666778888765422
Q ss_pred ---EEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecC---CCCeEEEEEcCCCCEEEEEECCCcEE
Q 006220 499 ---RIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH---RSMILSLAMSPDGRYMASGDEDGTIM 572 (656)
Q Consensus 499 ---~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h---~~~i~~l~~sp~g~~L~s~~~dg~I~ 572 (656)
.........-..++. .|++-+.+..|+-+.+-|+....... |.+| ...+.++..+++..+++..+. -+.
T Consensus 162 ~lagrya~~~~d~~~v~I--SGn~AYvA~~d~GL~ivDVSnp~sPv-li~~~n~g~g~~sv~vsdnr~y~vvy~e--gvl 236 (370)
T COG5276 162 QLAGRYALPGGDTHDVAI--SGNYAYVAWRDGGLTIVDVSNPHSPV-LIGSYNTGPGTYSVSVSDNRAYLVVYDE--GVL 236 (370)
T ss_pred eeeeeeccCCCCceeEEE--ecCeEEEEEeCCCeEEEEccCCCCCe-EEEEEecCCceEEEEecCCeeEEEEccc--ceE
Confidence 233333343344554 47778888899999999997653322 2222 236778888877666665532 355
Q ss_pred EEeCCCCe
Q 006220 573 MWDLASGR 580 (656)
Q Consensus 573 iwD~~~~~ 580 (656)
+-|....+
T Consensus 237 ivd~s~~s 244 (370)
T COG5276 237 IVDVSGPS 244 (370)
T ss_pred EEecCCCC
Confidence 66665444
No 465
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=87.72 E-value=41 Score=35.71 Aligned_cols=189 Identities=10% Similarity=0.015 Sum_probs=100.6
Q ss_pred EEEEEeCCCeEEEEeccCCceeEEeeCCC--ccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEE
Q 006220 435 FILSSSADTTIRLWSTKLNANLVCYKGHN--YPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVR 512 (656)
Q Consensus 435 ~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~--~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~ 512 (656)
.++.+..+|.|.-.|..++..+.....-. ..+.+-.+..+|+ ++.++.+|.++.+|.++++.+....... . ..
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~---~~ 144 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG-S---PY 144 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC-C---eE
Confidence 44555777778878877776554332211 1222222232555 7888889999999998888887776554 1 22
Q ss_pred Ec----CCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCC---CeEEEEEcCCCCEEEEEEC--CCcEEEEeCCCCeeeE
Q 006220 513 WH----INCNYIATGSSDKTVRLWDVSSGECVRIFIGHRS---MILSLAMSPDGRYMASGDE--DGTIMMWDLASGRCVT 583 (656)
Q Consensus 513 ~~----p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~---~i~~l~~sp~g~~L~s~~~--dg~I~iwD~~~~~~~~ 583 (656)
+. .....++.++.++.+.-.|..+|........... .+..-... ....++.+.. ++.+.-.|..+|....
T Consensus 145 ~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w 223 (370)
T COG1520 145 YASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLKW 223 (370)
T ss_pred EecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEccCCcEee
Confidence 21 1223444444778898889888888766443221 11000001 1233444444 5566666777776665
Q ss_pred eeeCCC----ccE--E-EEEEcC--CCCEEEEEECCCcEEEEeCCCCCceeeccc
Q 006220 584 PLMGHT----SCV--W-TLAYSC--EGSLLASGSADCTVKLWDVTTSTKVLKTEE 629 (656)
Q Consensus 584 ~~~~h~----~~V--~-~l~~s~--~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~ 629 (656)
....+. ..+ . .+...+ .+.-+..++.+|.+...+..+++...+...
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 224 SQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred eeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 532111 001 0 000000 112235556666677777777776665543
No 466
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=87.61 E-value=30 Score=37.35 Aligned_cols=143 Identities=15% Similarity=0.182 Sum_probs=83.9
Q ss_pred CCEEEEEeCCCeEEEEeccCCce----eEEeeCCCccEEEEEEec----CCCEEEEEECCCcEEEEECCCCc--------
Q 006220 433 GDFILSSSADTTIRLWSTKLNAN----LVCYKGHNYPVWDVQFNP----QGHYFASSSHDRTARIWSMDRIQ-------- 496 (656)
Q Consensus 433 ~~~L~s~s~Dg~I~lwd~~~~~~----~~~~~~h~~~V~~l~~sp----~~~~l~sgs~Dg~i~lwd~~~~~-------- 496 (656)
...+++||..|.++||+...... +..-..-..||..+.... .....++.=+.+.+.+|.+....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 35899999999999999864331 111122457888887653 22233333567888888873211
Q ss_pred -eeEEecCCCCCee--EEEEcC----C-CCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 006220 497 -PLRIMAGHLSDVD--CVRWHI----N-CNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYMASGDED 568 (656)
Q Consensus 497 -~~~~~~~~~~~V~--~v~~~p----~-~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L~s~~~d 568 (656)
.+..+..|.-.-+ .+++-| . ..+|.+=+.||.+.+|+-......+.+.+ .--...++|++.-..+++++.+
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss 195 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSS 195 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCc
Confidence 2222223322211 122212 2 35788889999999999665544444433 2222346777777777777777
Q ss_pred CcEEEEeC
Q 006220 569 GTIMMWDL 576 (656)
Q Consensus 569 g~I~iwD~ 576 (656)
..+..|..
T Consensus 196 ~~l~~Yky 203 (418)
T PF14727_consen 196 WTLECYKY 203 (418)
T ss_pred eeEEEecH
Confidence 77766653
No 467
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=87.38 E-value=35 Score=34.54 Aligned_cols=255 Identities=13% Similarity=0.114 Sum_probs=132.9
Q ss_pred ceecCCCCCC-ceeEEEEeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCC
Q 006220 331 RVHLSSAALP-SVSFYTFINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNG 409 (656)
Q Consensus 331 ~v~l~~~~~p-s~~~~~~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (656)
.+++-+.+.| +.....+.+..+--.|+..| |++.-++.-|.-+-+.|+.......
T Consensus 107 GL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--Gn~aYVadlddgfLivdvsdpssP~---------------------- 162 (370)
T COG5276 107 GLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--GNYAYVADLDDGFLIVDVSDPSSPQ---------------------- 162 (370)
T ss_pred ceEEEeccCCCCcceeccccCCceEEEEEec--CCEEEEeeccCcEEEEECCCCCCce----------------------
Confidence 3344344444 33344455555555666554 6676666545556678877522111
Q ss_pred CceeeEEeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEee--CCCccEEEEEEecCCCEEEEEECCCcE
Q 006220 410 RKRSYTLYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYK--GHNYPVWDVQFNPQGHYFASSSHDRTA 487 (656)
Q Consensus 410 ~~~~~~~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~--~h~~~V~~l~~sp~~~~l~sgs~Dg~i 487 (656)
..-.+....+.-..++.| |++-..+..|+-+.+-|+.......-+. .....+.++..+++..+++.. +--+
T Consensus 163 ---lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~egv 235 (370)
T COG5276 163 ---LAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DEGV 235 (370)
T ss_pred ---eeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--ccce
Confidence 111222223333456666 7777778888999999988654432221 123367778777766555554 3346
Q ss_pred EEEECCCCceeEEecC-CCCCeeEE-EEcCCCCEEEEEECCCcEEEEeCCCCeeEE---EEecCCCCeEEEEEcCCCCEE
Q 006220 488 RIWSMDRIQPLRIMAG-HLSDVDCV-RWHINCNYIATGSSDKTVRLWDVSSGECVR---IFIGHRSMILSLAMSPDGRYM 562 (656)
Q Consensus 488 ~lwd~~~~~~~~~~~~-~~~~V~~v-~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~---~~~~h~~~i~~l~~sp~g~~L 562 (656)
.+-|..+.+....+.. ..+.+.++ .+.-.+++......+.-+.+-|+.+..... .+......-..+..+ |.++
T Consensus 236 livd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~ 313 (370)
T COG5276 236 LIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYN 313 (370)
T ss_pred EEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cCee
Confidence 6777776654443321 11222222 333456677777777777777776432211 111111122223333 4444
Q ss_pred EEEECCCcEEEEeCCCCeeeEeeeCCCccEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006220 563 ASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVT 619 (656)
Q Consensus 563 ~s~~~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iWd~~ 619 (656)
..+..+ ...+-|...-+......+....+.+.+.+-+.+++.+...++-+.||+..
T Consensus 314 yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 314 YIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred EeccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence 444433 33444544333222222222334445555556688888899999999863
No 468
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=87.12 E-value=1.8 Score=30.16 Aligned_cols=31 Identities=16% Similarity=0.302 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCC---CEEEEEeCCCcEEEEEcCC
Q 006220 352 NGLNCASISQDG---SLVAGGFSDSSLKVWDMAK 382 (656)
Q Consensus 352 ~~V~~l~fs~dg---~~La~g~~dg~I~Iwdl~~ 382 (656)
+.|.|+.|||+. .+||..-.-|.|.|+|+..
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 5899888889999999873
No 469
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.70 E-value=5.7 Score=47.63 Aligned_cols=136 Identities=17% Similarity=0.307 Sum_probs=87.5
Q ss_pred eCCCeEEEEeccCCceeEEeeCCCccEEEEEE--------ecCCCEEEEEECCCcEEEEECCCCc---ee------EEec
Q 006220 440 SADTTIRLWSTKLNANLVCYKGHNYPVWDVQF--------NPQGHYFASSSHDRTARIWSMDRIQ---PL------RIMA 502 (656)
Q Consensus 440 s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~--------sp~~~~l~sgs~Dg~i~lwd~~~~~---~~------~~~~ 502 (656)
+.|+.+.+|+.+++.....+.+-...|..|.. .|.=+++++.+.--.|.++-+.-.. .. ..+.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 45778999999998888888877777766643 3333444444444556665432110 01 1222
Q ss_pred CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeC----CCC---e-e----------------EEEEe-cCCCCeEEEEEcC
Q 006220 503 GHLSDVDCVRWHINCNYIATGSSDKTVRLWDV----SSG---E-C----------------VRIFI-GHRSMILSLAMSP 557 (656)
Q Consensus 503 ~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~----~~~---~-~----------------~~~~~-~h~~~i~~l~~sp 557 (656)
.....|.|+....+|+.+++| .||. +|.+ ..| + | +..+. .+..+|..|+...
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G-~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAG-RDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred cCCceEEEEEeccCCcEEEee-cCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 334668999977788777766 4554 4433 111 1 1 01122 5667999999998
Q ss_pred CCCEEEEEECCCcEEEEeCCC
Q 006220 558 DGRYMASGDEDGTIMMWDLAS 578 (656)
Q Consensus 558 ~g~~L~s~~~dg~I~iwD~~~ 578 (656)
....+.+-+..|+|.+||+..
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccceeeeeccCceEEEEEccC
Confidence 888999999999999999976
No 470
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=86.61 E-value=65 Score=36.77 Aligned_cols=162 Identities=14% Similarity=0.122 Sum_probs=88.3
Q ss_pred ccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeE--EeeC-CCc------cEEEEEEecCCCEEEEEEC-C---CcE
Q 006220 421 SGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV--CYKG-HNY------PVWDVQFNPQGHYFASSSH-D---RTA 487 (656)
Q Consensus 421 ~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~--~~~~-h~~------~V~~l~~sp~~~~l~sgs~-D---g~i 487 (656)
.+.|.++.|.++++.+++...+|.|.+||...+.... ..+. +.. -|.....-....++++.+. + -..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 6789999999999999999999999999993222111 1111 111 1222221112334444443 2 245
Q ss_pred EEEEC--CCCceeEEec---CCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecC-----C-CCeEEEEEc
Q 006220 488 RIWSM--DRIQPLRIMA---GHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGH-----R-SMILSLAMS 556 (656)
Q Consensus 488 ~lwd~--~~~~~~~~~~---~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h-----~-~~i~~l~~s 556 (656)
+++.+ +.. .+..+. .+........|+-+...|+.- .+++|.+|++.+.+.+.++.-. . ..+.++.--
T Consensus 209 kL~~l~~~~~-~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~ 286 (670)
T PF10395_consen 209 KLISLSNESS-SIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPP 286 (670)
T ss_pred EEEEeccCCc-ceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEeecC
Confidence 67777 222 222222 222233333444333344333 6789999999888776655422 1 223333322
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCeeeEeee
Q 006220 557 PDGRYMASGDEDGTIMMWDLASGRCVTPLM 586 (656)
Q Consensus 557 p~g~~L~s~~~dg~I~iwD~~~~~~~~~~~ 586 (656)
...+.|++. ++.|++.|+.-...+.++.
T Consensus 287 s~nRvLLs~--~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 287 SPNRVLLSV--NNKIYLLDLKFESILSEFE 314 (670)
T ss_pred CCCeEEEEc--CCEEEEEeehhhhhhhhhh
Confidence 233455543 5689999997666665554
No 471
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=86.29 E-value=52 Score=35.41 Aligned_cols=146 Identities=12% Similarity=0.095 Sum_probs=82.4
Q ss_pred EEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCee-----E
Q 006220 466 VWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGEC-----V 540 (656)
Q Consensus 466 V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~-----~ 540 (656)
...+..++++.+++.+.....++-||--...-...-......+..+.|.+++..++++ .+|.+. |....+.. .
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f 318 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDF 318 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccce
Confidence 3445667777776666543333334432211112222344668899999998877766 455543 33344431 1
Q ss_pred EEEec--CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeeeEeee---CCCccEEEEEEcCCCCEEEEEECCCcEEE
Q 006220 541 RIFIG--HRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLM---GHTSCVWTLAYSCEGSLLASGSADCTVKL 615 (656)
Q Consensus 541 ~~~~~--h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~~~~~~~~---~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i 615 (656)
..... ....+..+.|.+++..+++| ..|.+.... ..|+.-.... .-....+.+.|.++++.+++ +.+|.|.-
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~il~ 395 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVLLR 395 (398)
T ss_pred eecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE-eCCcEEEE
Confidence 21111 12358889999887765555 667666653 4555433332 22457889999877665554 45777654
Q ss_pred E
Q 006220 616 W 616 (656)
Q Consensus 616 W 616 (656)
|
T Consensus 396 ~ 396 (398)
T PLN00033 396 Y 396 (398)
T ss_pred e
Confidence 4
No 472
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=86.09 E-value=18 Score=40.94 Aligned_cols=32 Identities=9% Similarity=0.079 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 006220 352 NGLNCASISQDGSLVAGGFSDSSLKVWDMAKL 383 (656)
Q Consensus 352 ~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~ 383 (656)
.-++++.-+|.|+-++.|..||+|++|++.+.
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r 46 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPR 46 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeeccc
Confidence 34778888899999999999999999998754
No 473
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=85.72 E-value=71 Score=36.44 Aligned_cols=158 Identities=11% Similarity=0.083 Sum_probs=84.8
Q ss_pred CccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeE--Eec-CCCCC------eeEEEEcCCCCEEEEEEC-C---CcE
Q 006220 463 NYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLR--IMA-GHLSD------VDCVRWHINCNYIATGSS-D---KTV 529 (656)
Q Consensus 463 ~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~--~~~-~~~~~------V~~v~~~p~~~~l~tgs~-d---g~V 529 (656)
...|.++.|.+++..+++.-.+|.|.+||........ ... .+... |..........++++.+. + -..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 5678899999999999999999999999993221111 111 11111 111111122345555443 2 257
Q ss_pred EEEeCC-CCeeEEEEe---cCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCCCCeeeEeeeCC-----C-ccEEEEEEc
Q 006220 530 RLWDVS-SGECVRIFI---GHRSMILSLAMSP-DGRYMASGDEDGTIMMWDLASGRCVTPLMGH-----T-SCVWTLAYS 598 (656)
Q Consensus 530 ~iwd~~-~~~~~~~~~---~h~~~i~~l~~sp-~g~~L~s~~~dg~I~iwD~~~~~~~~~~~~h-----~-~~V~~l~~s 598 (656)
+++.+. ....+..+. .+........|+- +|.+..- .++.|.+|++...+...++.-. . ..+.++.--
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~ 286 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPP 286 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeecC
Confidence 777771 122222221 1112222222222 4543333 6789999999888777665422 1 234444422
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCCce
Q 006220 599 CEGSLLASGSADCTVKLWDVTTSTKV 624 (656)
Q Consensus 599 ~~~~~l~sgs~Dg~I~iWd~~~~~~~ 624 (656)
...+.|++ .++.|++.|+.-...+
T Consensus 287 s~nRvLLs--~~nkIyLld~~~~siL 310 (670)
T PF10395_consen 287 SPNRVLLS--VNNKIYLLDLKFESIL 310 (670)
T ss_pred CCCeEEEE--cCCEEEEEeehhhhhh
Confidence 23344443 3668999998655443
No 474
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=85.52 E-value=15 Score=38.58 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=56.1
Q ss_pred cEEEEEEecCCCEEEEEECCCcEEEEECCCCc--eeEEe----cCCCCCeeEEEEcCC---CCEEEEEEC-C--------
Q 006220 465 PVWDVQFNPQGHYFASSSHDRTARIWSMDRIQ--PLRIM----AGHLSDVDCVRWHIN---CNYIATGSS-D-------- 526 (656)
Q Consensus 465 ~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~--~~~~~----~~~~~~V~~v~~~p~---~~~l~tgs~-d-------- 526 (656)
..+.|+|.|+|..|++ ...|.|++++.+... .+..+ .........++++|+ ..+|++... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 3578999999877665 569999999933322 22222 133456789999994 344444332 1
Q ss_pred CcEEEEeCCCC--e------eEEEEec---CCCCeEEEEEcCCCCEEEEEECC
Q 006220 527 KTVRLWDVSSG--E------CVRIFIG---HRSMILSLAMSPDGRYMASGDED 568 (656)
Q Consensus 527 g~V~iwd~~~~--~------~~~~~~~---h~~~i~~l~~sp~g~~L~s~~~d 568 (656)
..|.-|....+ . .+..... ....-..|.|.|||.+.++.+..
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~ 134 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG 134 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence 23444444333 1 1112222 23455679999999776665543
No 475
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=85.52 E-value=51 Score=34.58 Aligned_cols=39 Identities=18% Similarity=0.318 Sum_probs=18.5
Q ss_pred cEEEEeCCCCee--eEeeeCCCccEEEEEEcCCCCEEEEEECC
Q 006220 570 TIMMWDLASGRC--VTPLMGHTSCVWTLAYSCEGSLLASGSAD 610 (656)
Q Consensus 570 ~I~iwD~~~~~~--~~~~~~h~~~V~~l~~s~~~~~l~sgs~D 610 (656)
.+.+||..+.+- +..+.. ..-...+..-++.+++.|+.+
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~--~~~~~~~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQ--GLAYGVSVSWNNGVLLIGGEN 331 (346)
T ss_pred EeeEEEecCCcccccCCCCC--CceeeEEEEcCCEEEEEeccC
Confidence 466788765432 222211 111122334467777777754
No 476
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=85.21 E-value=56 Score=35.46 Aligned_cols=31 Identities=32% Similarity=0.669 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 006220 548 SMILSLAMSPDGRYMASGDEDGTIMMWDLAS 578 (656)
Q Consensus 548 ~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~~ 578 (656)
..|.+++..+..+.+++.+.+|.|.+||+..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 4489999999889999999999999999974
No 477
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=85.04 E-value=68 Score=35.56 Aligned_cols=117 Identities=14% Similarity=0.094 Sum_probs=61.4
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCcc---EEEEEEecCCCEEEEEEC-------------CCcEEEE
Q 006220 427 ASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYP---VWDVQFNPQGHYFASSSH-------------DRTARIW 490 (656)
Q Consensus 427 l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~---V~~l~~sp~~~~l~sgs~-------------Dg~i~lw 490 (656)
+...++|.+++..+ +.+..+|+. |+.+..+...... -.++..-|+|++|+.+.. .-.|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 55667887776555 678888886 5555544432211 346778899999888772 1124444
Q ss_pred ECCCCceeEEec--CCC-------------------------CCeeEEEEcCCCCEEEEEEC-CCcEEEEeCCCCeeEEE
Q 006220 491 SMDRIQPLRIMA--GHL-------------------------SDVDCVRWHINCNYIATGSS-DKTVRLWDVSSGECVRI 542 (656)
Q Consensus 491 d~~~~~~~~~~~--~~~-------------------------~~V~~v~~~p~~~~l~tgs~-dg~V~iwd~~~~~~~~~ 542 (656)
| .+++.+..+. .|. -.++++.+.+....|+.+++ -..|...|.++++....
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi 308 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI 308 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence 4 4444443321 110 13788999985555555555 45899999889988877
Q ss_pred EecCC
Q 006220 543 FIGHR 547 (656)
Q Consensus 543 ~~~h~ 547 (656)
+-.+.
T Consensus 309 lg~~~ 313 (477)
T PF05935_consen 309 LGPPG 313 (477)
T ss_dssp ES-ST
T ss_pred eCCCC
Confidence 76553
No 478
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=85.00 E-value=90 Score=36.94 Aligned_cols=157 Identities=13% Similarity=0.169 Sum_probs=93.9
Q ss_pred CCCccEEEEEEe---c----CCCEEEEEECCCcEEEEECC------C---------CceeEEec---CCCCCeeEEEEcC
Q 006220 461 GHNYPVWDVQFN---P----QGHYFASSSHDRTARIWSMD------R---------IQPLRIMA---GHLSDVDCVRWHI 515 (656)
Q Consensus 461 ~h~~~V~~l~~s---p----~~~~l~sgs~Dg~i~lwd~~------~---------~~~~~~~~---~~~~~V~~v~~~p 515 (656)
....||..|+|. . ...+|++-. ...+.|+... . ..++..+. ....+...|+|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456788888887 2 223555443 4556666511 1 12333333 1234567899998
Q ss_pred -CCCEEEEEECCCcEEEEeCCCC-----eeEEEEecCCCC----------eEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 006220 516 -NCNYIATGSSDKTVRLWDVSSG-----ECVRIFIGHRSM----------ILSLAMSPDGRYMASGDEDGTIMMWDLASG 579 (656)
Q Consensus 516 -~~~~l~tgs~dg~V~iwd~~~~-----~~~~~~~~h~~~----------i~~l~~sp~g~~L~s~~~dg~I~iwD~~~~ 579 (656)
+...||+....|...|||+... ...+....+.+. -..|.|.++...|+.++. ..+.++|+.+.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence 4568999999999999999211 111111122222 237889888777777764 57889999877
Q ss_pred eeeEee--eCCCccEEEEEEcCC--CCEEEEEECCCcEEEEeCCCC
Q 006220 580 RCVTPL--MGHTSCVWTLAYSCE--GSLLASGSADCTVKLWDVTTS 621 (656)
Q Consensus 580 ~~~~~~--~~h~~~V~~l~~s~~--~~~l~sgs~Dg~I~iWd~~~~ 621 (656)
.....+ ......|..+.-++. +..++-. ...|...++...
T Consensus 235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~ 278 (765)
T PF10214_consen 235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS 278 (765)
T ss_pred CccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence 653312 123367888888876 3333332 246777777763
No 479
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=84.87 E-value=37 Score=32.70 Aligned_cols=121 Identities=13% Similarity=0.197 Sum_probs=68.4
Q ss_pred CCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECCCCceeEEecC--C---CCCeeEEEEcC
Q 006220 441 ADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMDRIQPLRIMAG--H---LSDVDCVRWHI 515 (656)
Q Consensus 441 ~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~--~---~~~V~~v~~~p 515 (656)
.+|.-..+|.++.+++..+. -.+.-|.++. ++..++.++...+++.-|..+......+.. . -..++-+.|-
T Consensus 109 ~egvaf~~d~~t~~~lg~~~-y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V- 184 (262)
T COG3823 109 KEGVAFKYDADTLEELGRFS-YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV- 184 (262)
T ss_pred ccceeEEEChHHhhhhcccc-cCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-
Confidence 46778889988888776654 3445566655 455566665556666666554433322221 1 1122233332
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeeEEEEe------------cCCCCeEEEEEcCCC-CEEEEE
Q 006220 516 NCNYIATGSSDKTVRLWDVSSGECVRIFI------------GHRSMILSLAMSPDG-RYMASG 565 (656)
Q Consensus 516 ~~~~l~tgs~dg~V~iwd~~~~~~~~~~~------------~h~~~i~~l~~sp~g-~~L~s~ 565 (656)
+|...|-.-.+..|...|..+|+.+..+. .|..-.+.|++.|++ +++++|
T Consensus 185 dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 185 DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 45444444445556666777777665442 244456778999877 455555
No 480
>PLN02153 epithiospecifier protein
Probab=84.64 E-value=56 Score=34.26 Aligned_cols=66 Identities=6% Similarity=0.036 Sum_probs=32.9
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCceeEE--ecC---CCCCeeEEEEcCCCCEEEEEECC-----------CcEEEE
Q 006220 474 QGHYFASSSHD-----RTARIWSMDRIQPLRI--MAG---HLSDVDCVRWHINCNYIATGSSD-----------KTVRLW 532 (656)
Q Consensus 474 ~~~~l~sgs~D-----g~i~lwd~~~~~~~~~--~~~---~~~~V~~v~~~p~~~~l~tgs~d-----------g~V~iw 532 (656)
++.+++.|+.+ ..+.+||+.+.+-... +.. ........+..-++..++.|+.+ ..|.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 46667777753 2577888776433221 100 11111111112345566666643 247788
Q ss_pred eCCCCee
Q 006220 533 DVSSGEC 539 (656)
Q Consensus 533 d~~~~~~ 539 (656)
|..+..-
T Consensus 165 d~~~~~W 171 (341)
T PLN02153 165 NIADGKW 171 (341)
T ss_pred ECCCCeE
Confidence 8876543
No 481
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=84.63 E-value=8.1 Score=36.29 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=25.5
Q ss_pred cCEEEEEEccCC------CEEEEEeCCCeEEEEeccC
Q 006220 422 GPVYSASFSPLG------DFILSSSADTTIRLWSTKL 452 (656)
Q Consensus 422 ~~V~~l~~spd~------~~L~s~s~Dg~I~lwd~~~ 452 (656)
..|.+++|||.| ..|++.+.+|.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478999999955 3688899999999998653
No 482
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=84.21 E-value=57 Score=34.05 Aligned_cols=143 Identities=15% Similarity=0.219 Sum_probs=85.8
Q ss_pred ccCEEEEEEccCCCEEEEEeCCCe------EEEEeccCC----ceeE-----EeeCCCc--------cEEEEEEecCCCE
Q 006220 421 SGPVYSASFSPLGDFILSSSADTT------IRLWSTKLN----ANLV-----CYKGHNY--------PVWDVQFNPQGHY 477 (656)
Q Consensus 421 ~~~V~~l~~spd~~~L~s~s~Dg~------I~lwd~~~~----~~~~-----~~~~h~~--------~V~~l~~sp~~~~ 477 (656)
-+.+.++.+.+++..+++.|.+|. +..+++... ..+. .+....+ ..-+|++.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 367788999976667777777777 655555431 1111 1111111 3347888777877
Q ss_pred EEEEECC------CcEEEEECCCCceeEEec---------------CCCCCeeEEEEcCCCCEEEEEEC-----CC--c-
Q 006220 478 FASSSHD------RTARIWSMDRIQPLRIMA---------------GHLSDVDCVRWHINCNYIATGSS-----DK--T- 528 (656)
Q Consensus 478 l~sgs~D------g~i~lwd~~~~~~~~~~~---------------~~~~~V~~v~~~p~~~~l~tgs~-----dg--~- 528 (656)
+++.=.+ ..|+.++.+ ++....+. .......+++++|+|+.|+++.. |+ .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 7776666 678888866 44433331 12345789999999997766532 22 1
Q ss_pred ------EEE--EeCCC-CeeEEEE--ec-------CCCCeEEEEEcCCCCEEEE
Q 006220 529 ------VRL--WDVSS-GECVRIF--IG-------HRSMILSLAMSPDGRYMAS 564 (656)
Q Consensus 529 ------V~i--wd~~~-~~~~~~~--~~-------h~~~i~~l~~sp~g~~L~s 564 (656)
+++ ||..+ +.....+ .- ....|+.+.+-+++++|+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 455 45444 3233222 21 3457889999999987765
No 483
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=83.59 E-value=66 Score=34.26 Aligned_cols=193 Identities=17% Similarity=0.216 Sum_probs=107.9
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEee-cCc---cCEEEEEEccCCCE-
Q 006220 361 QDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQ-GHS---GPVYSASFSPLGDF- 435 (656)
Q Consensus 361 ~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~---~~V~~l~~spd~~~- 435 (656)
|..++++....++-+.+||++.... ..+. +.. .-.+.+.+ .|+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~l-----------------------------q~~~~Gr~NNVDvrygf~l--~g~~v 114 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKEL-----------------------------QSLPVGRPNNVDVRYGFPL--NGKTV 114 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-EE-----------------------------EEE-SS-EEEEEEEEEEEE--TTEEE
T ss_pred cccceEEEEeCCCCEEEEcCCCcEE-----------------------------EeecCCCcceeeeecceec--CCceE
Confidence 4566777777888999999985221 1111 111 11223333 2332
Q ss_pred -EEEEeC-C---CeEEEEeccCC-ceeEEeeC-------CCccEEEEEEe--c-CCC-EEEEEECCCcEEEEECC---CC
Q 006220 436 -ILSSSA-D---TTIRLWSTKLN-ANLVCYKG-------HNYPVWDVQFN--P-QGH-YFASSSHDRTARIWSMD---RI 495 (656)
Q Consensus 436 -L~s~s~-D---g~I~lwd~~~~-~~~~~~~~-------h~~~V~~l~~s--p-~~~-~l~sgs~Dg~i~lwd~~---~~ 495 (656)
|+.++. + .+|++|.+... ..+..+.. ....+..+|+. + +|. ++++.+.+|.+..|-+. .+
T Consensus 115 Dlavas~R~~g~n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g 194 (381)
T PF02333_consen 115 DLAVASDRSDGRNSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDG 194 (381)
T ss_dssp EEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTS
T ss_pred EEEEEecCcCCCCeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCC
Confidence 444432 2 47999988632 22333321 11236677764 3 344 56677789988888763 22
Q ss_pred ----ceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCC-----eeEEEEec--CCCCeEEEEEc--CCC-CE
Q 006220 496 ----QPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSG-----ECVRIFIG--HRSMILSLAMS--PDG-RY 561 (656)
Q Consensus 496 ----~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~-----~~~~~~~~--h~~~i~~l~~s--p~g-~~ 561 (656)
+.+|.|.. .+.+..|.......+|+.|-.+.-|+-|+.... ..+....+ ....|-.|++- ++| .|
T Consensus 195 ~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gY 273 (381)
T PF02333_consen 195 KVSATLVREFKV-GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGY 273 (381)
T ss_dssp SEEEEEEEEEE--SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EE
T ss_pred cEeeEEEEEecC-CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeE
Confidence 35777764 357889999988889999999988888887622 22222222 23456677764 343 34
Q ss_pred EE-EEECCCcEEEEeCCC-CeeeEee
Q 006220 562 MA-SGDEDGTIMMWDLAS-GRCVTPL 585 (656)
Q Consensus 562 L~-s~~~dg~I~iwD~~~-~~~~~~~ 585 (656)
|+ |.-.+++..|||... ...+..+
T Consensus 274 LivSsQG~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 274 LIVSSQGDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp EEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred EEEEcCCCCeEEEEecCCCCcccceE
Confidence 54 444677899999764 3434444
No 484
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=83.26 E-value=68 Score=34.16 Aligned_cols=187 Identities=18% Similarity=0.214 Sum_probs=109.2
Q ss_pred cCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEe----cCCCE--EEEEEC-C---CcEEEEECCCC-ceeE
Q 006220 431 PLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFN----PQGHY--FASSSH-D---RTARIWSMDRI-QPLR 499 (656)
Q Consensus 431 pd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~s----p~~~~--l~sgs~-D---g~i~lwd~~~~-~~~~ 499 (656)
|...+++....++-+.+||++ |+.+..+.. +....+..- -.|.. |+.++. + .+|++|.++.. ..+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 345678888888999999998 556665542 223333221 13433 445542 2 46999987632 2333
Q ss_pred EecC-------CCCCeeEEEEc--C-CCC-EEEEEECCCcEEEEeCC---CC----eeEEEEecCCCCeEEEEEcCCCCE
Q 006220 500 IMAG-------HLSDVDCVRWH--I-NCN-YIATGSSDKTVRLWDVS---SG----ECVRIFIGHRSMILSLAMSPDGRY 561 (656)
Q Consensus 500 ~~~~-------~~~~V~~v~~~--p-~~~-~l~tgs~dg~V~iwd~~---~~----~~~~~~~~h~~~i~~l~~sp~g~~ 561 (656)
.+.. ....+..+|+. | +|. |.++...+|.+..|-+. ++ +.+|.|... +.+-.|.......+
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~-sQ~EGCVVDDe~g~ 221 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG-SQPEGCVVDDETGR 221 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S-S-EEEEEEETTTTE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC-CcceEEEEecccCC
Confidence 3321 12345566653 3 344 56677888988887764 33 467888753 46888888888889
Q ss_pred EEEEECCCcEEEEeCCC-----CeeeEeeeC--CCccEEEEEEc--CCC-CE-EEEEECCCcEEEEeCCCC
Q 006220 562 MASGDEDGTIMMWDLAS-----GRCVTPLMG--HTSCVWTLAYS--CEG-SL-LASGSADCTVKLWDVTTS 621 (656)
Q Consensus 562 L~s~~~dg~I~iwD~~~-----~~~~~~~~~--h~~~V~~l~~s--~~~-~~-l~sgs~Dg~I~iWd~~~~ 621 (656)
|+.|-++--|.-|+... ++.+....+ ....|-.|+.- .++ .| |+|.-.+++..||+....
T Consensus 222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 99999988777777652 233333322 33567777764 333 24 444446788999998764
No 485
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.04 E-value=14 Score=44.64 Aligned_cols=136 Identities=16% Similarity=0.237 Sum_probs=86.3
Q ss_pred ECCCcEEEEECCCCceeEEecCCCCCeeEEEEc--------CCCCEEEEEECCCcEEEEeCC----CCeeE-----EEEe
Q 006220 482 SHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWH--------INCNYIATGSSDKTVRLWDVS----SGECV-----RIFI 544 (656)
Q Consensus 482 s~Dg~i~lwd~~~~~~~~~~~~~~~~V~~v~~~--------p~~~~l~tgs~dg~V~iwd~~----~~~~~-----~~~~ 544 (656)
+-|..+.+|+.++......+.+-...|..|..- |.=++++.-+.--.|.++-+. ++..- ..+.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 357889999999877777776666666555432 222344443344455555432 21110 1122
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC----CC---e-e----------------eEeee-CCCccEEEEEEcC
Q 006220 545 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLA----SG---R-C----------------VTPLM-GHTSCVWTLAYSC 599 (656)
Q Consensus 545 ~h~~~i~~l~~sp~g~~L~s~~~dg~I~iwD~~----~~---~-~----------------~~~~~-~h~~~V~~l~~s~ 599 (656)
.....|+|+....+|+.+++|- || .+|.+. .| + | +-.+. .+..+|..++...
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 2345788999888898887775 45 455541 11 0 1 11223 4567999999998
Q ss_pred CCCEEEEEECCCcEEEEeCCC
Q 006220 600 EGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 600 ~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
..+++.+-+.-|+|.+|++..
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccceeeeeccCceEEEEEccC
Confidence 888999999999999999987
No 486
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=81.80 E-value=69 Score=33.24 Aligned_cols=107 Identities=4% Similarity=0.061 Sum_probs=51.1
Q ss_pred CCCEEEEEeCC-----CeEEEEeccCCce---eEEeeCCCccE--EEEEEecCCCEEEEEEC-----CCcEEEEECCCCc
Q 006220 432 LGDFILSSSAD-----TTIRLWSTKLNAN---LVCYKGHNYPV--WDVQFNPQGHYFASSSH-----DRTARIWSMDRIQ 496 (656)
Q Consensus 432 d~~~L~s~s~D-----g~I~lwd~~~~~~---~~~~~~h~~~V--~~l~~sp~~~~l~sgs~-----Dg~i~lwd~~~~~ 496 (656)
++..++.|+.+ ..+..+|+.+... ......-..+. .+++.. ++..++.|+. ...+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 45566666654 3566677765542 11111111111 122222 5666677764 2357778877654
Q ss_pred eeEEecCC-CCCeeEEEEcCCCCEEEEEECCC----cEEEEeCCCCee
Q 006220 497 PLRIMAGH-LSDVDCVRWHINCNYIATGSSDK----TVRLWDVSSGEC 539 (656)
Q Consensus 497 ~~~~~~~~-~~~V~~v~~~p~~~~l~tgs~dg----~V~iwd~~~~~~ 539 (656)
-...-... .......+...++...+.|+.++ .+..||..+.+-
T Consensus 151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 32211111 11112222233566777777653 356888877653
No 487
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=81.78 E-value=8.2 Score=43.60 Aligned_cols=38 Identities=21% Similarity=0.455 Sum_probs=29.5
Q ss_pred CeeEEEEcC----CCCEEEEEECCCcEEEEeCCCCeeEEEEe
Q 006220 507 DVDCVRWHI----NCNYIATGSSDKTVRLWDVSSGECVRIFI 544 (656)
Q Consensus 507 ~V~~v~~~p----~~~~l~tgs~dg~V~iwd~~~~~~~~~~~ 544 (656)
.+..+++++ +..++++.+.|+++|+||+.++.++....
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 455566666 67899999999999999999999977653
No 488
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=81.67 E-value=6.9 Score=36.75 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=24.9
Q ss_pred CCeeEEEEcCCC------CEEEEEECCCcEEEEeCC
Q 006220 506 SDVDCVRWHINC------NYIATGSSDKTVRLWDVS 535 (656)
Q Consensus 506 ~~V~~v~~~p~~------~~l~tgs~dg~V~iwd~~ 535 (656)
..|..++|+|.| .+|++.+.++.|.||...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 478999999854 478889999999999865
No 489
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=81.47 E-value=1.1e+02 Score=35.34 Aligned_cols=31 Identities=3% Similarity=0.115 Sum_probs=23.7
Q ss_pred CCccEEEEEEecCCCEEEEEECCCcEEEEEC
Q 006220 462 HNYPVWDVQFNPQGHYFASSSHDRTARIWSM 492 (656)
Q Consensus 462 h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~ 492 (656)
-...|...+||.|...++....+++|.+++.
T Consensus 111 v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k 141 (1243)
T COG5290 111 VSNGIVAASWSADEKTWCVVTSTREILLFDK 141 (1243)
T ss_pred ccCceEEEeeccCCceEEEEEcCceEEEEec
Confidence 3456778888888887877777888888763
No 490
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=81.43 E-value=3 Score=44.14 Aligned_cols=167 Identities=15% Similarity=0.106 Sum_probs=99.8
Q ss_pred EeecCccCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeE-Ee-eC-CC---ccEE-EEEEecCCCEEEEEECCCcEE
Q 006220 416 LYQGHSGPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLV-CY-KG-HN---YPVW-DVQFNPQGHYFASSSHDRTAR 488 (656)
Q Consensus 416 ~l~~h~~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~-~~-~~-h~---~~V~-~l~~sp~~~~l~sgs~Dg~i~ 488 (656)
.+..-...|..+-..|||+.|..-+. .++.++++....... .+ .. .. ..|. .+..-..|..+++++.||.+.
T Consensus 215 ~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vs 293 (733)
T COG4590 215 LLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVS 293 (733)
T ss_pred hcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCcee
Confidence 34445577888899999998876665 678888887543211 11 11 01 1121 122223566788899999998
Q ss_pred EE-ECCCC-c----eeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeEEEEEcCCCCEE
Q 006220 489 IW-SMDRI-Q----PLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMILSLAMSPDGRYM 562 (656)
Q Consensus 489 lw-d~~~~-~----~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~L 562 (656)
-| |.+.. . .++.+.-....+..+.-..+.+-+++-+..|++..+.....+.+-. ..--..+.-+++||++.++
T Consensus 294 QWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~~~~~~~~~~~Sp~~~~L 372 (733)
T COG4590 294 QWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-ERAYQAPQLVAMSPNQAYL 372 (733)
T ss_pred eeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh-hhhhcCcceeeeCcccchh
Confidence 88 44322 1 2333333334444444334455677777888888876544443322 2222356678999999998
Q ss_pred EEEECCCcEEEEeCCCCeeeEee
Q 006220 563 ASGDEDGTIMMWDLASGRCVTPL 585 (656)
Q Consensus 563 ~s~~~dg~I~iwD~~~~~~~~~~ 585 (656)
++-. .|.|+++.+.+..+-.++
T Consensus 373 l~e~-~gki~~~~l~Nr~Peisw 394 (733)
T COG4590 373 LSED-QGKIRLAQLENRNPEISW 394 (733)
T ss_pred eeec-CCceEEEEecCCCCCccH
Confidence 8764 578999988765544333
No 491
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=80.61 E-value=84 Score=33.48 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=18.2
Q ss_pred EEEEeCCCCeee--EeeeCCCccEEEEEEcCCCCEEEEEECC
Q 006220 571 IMMWDLASGRCV--TPLMGHTSCVWTLAYSCEGSLLASGSAD 610 (656)
Q Consensus 571 I~iwD~~~~~~~--~~~~~h~~~V~~l~~s~~~~~l~sgs~D 610 (656)
+.+||..+.+-. ..+.. ..-...+..-++.+++.||..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~--~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQ--GLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCC--CccceEEEEeCCEEEEEcCCC
Confidence 457887765422 22211 111122333457778887754
No 492
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=80.60 E-value=30 Score=39.53 Aligned_cols=206 Identities=15% Similarity=0.126 Sum_probs=97.6
Q ss_pred EeeCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccCCCCCCCCCCccccCCCCCceeeEEeec-------
Q 006220 347 FINTHNGLNCASISQDGSLVAGGFSDSSLKVWDMAKLGQQAVSSGLQGENDTTPREDIIGPNGRKRSYTLYQG------- 419 (656)
Q Consensus 347 ~~~~~~~V~~l~fs~dg~~La~g~~dg~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------- 419 (656)
...-.++|-..+||.|.+.++.-+.+..|-+++-.-...... . +.. .+.......+ .-+.++.-+.+.|
T Consensus 108 vG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~fd~ise~-~-L~~-~dl~ef~khi-~VgWgkketqfrgk~~raql 183 (1243)
T COG5290 108 VGKVSNGIVAASWSADEKTWCVVTSTREILLFDKYFDPISEY-H-LKK-SDLVEFGKHI-RVGWGKKETQFRGKGARAQL 183 (1243)
T ss_pred hccccCceEEEeeccCCceEEEEEcCceEEEEeccccccchh-h-cch-hHHHHhccce-Eeeecccchhccccchhhhc
Confidence 344578899999999999888888888898887432100000 0 000 0000000000 0000000000000
Q ss_pred ---------CccCE-------EEEEEccCCCEEEEEeCC----CeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEE
Q 006220 420 ---------HSGPV-------YSASFSPLGDFILSSSAD----TTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFA 479 (656)
Q Consensus 420 ---------h~~~V-------~~l~~spd~~~L~s~s~D----g~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~ 479 (656)
..|.+ .-++|-.|..+.+.+... ..+++|+-. |..-......++.-..++|-|+|..++
T Consensus 184 rdptmp~~vD~G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~prra~rvysre-g~lds~sep~~g~e~~LSWkpqgS~~a 262 (1243)
T COG5290 184 RDPTMPYMVDYGDLFAVDTNKKIIFWRGDTEYNLVGRSEERPRRAFRVYSRE-GQLDSASEPVTGMEHQLSWKPQGSKYA 262 (1243)
T ss_pred cCCCCcccccccceeEeeCCceEEEEccCcceeeecchhcccccceeeeccc-cccccccCCcccchhccccccCCceee
Confidence 01111 235565566665555432 235555532 221111112223334579999999999
Q ss_pred EEECCCc-----EEEEECC---CCceeEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEEeCCCCeeEEEEecCCCCeE
Q 006220 480 SSSHDRT-----ARIWSMD---RIQPLRIMAGHLSDVDCVRWHINCNYIATGSSDKTVRLWDVSSGECVRIFIGHRSMIL 551 (656)
Q Consensus 480 sgs~Dg~-----i~lwd~~---~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs~dg~V~iwd~~~~~~~~~~~~h~~~i~ 551 (656)
+-+.||. +.++... .+..-.. .+-...+..++|+-+...++.+ ..+.+.+|-..+-.---...-.-..+.
T Consensus 263 ti~td~~~~S~~ViFfErNGLrHGef~lr-~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyhWYLK~e~~ip~~s 340 (1243)
T COG5290 263 TIGTDGCSTSESVIFFERNGLRHGEFDLR-VGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYHWYLKVERQIPGIS 340 (1243)
T ss_pred eeccCCCCCcceEEEEccCCcccCCcccc-CCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceEEEEEEeecCCCcc
Confidence 9886653 3333321 1211100 1223345667777666555544 346789997655433222222233456
Q ss_pred EEEEcCCC
Q 006220 552 SLAMSPDG 559 (656)
Q Consensus 552 ~l~~sp~g 559 (656)
-+.|+|..
T Consensus 341 ~vkwhpe~ 348 (1243)
T COG5290 341 YVKWHPEE 348 (1243)
T ss_pred eeeecccc
Confidence 67777743
No 493
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=80.24 E-value=78 Score=32.85 Aligned_cols=134 Identities=9% Similarity=0.134 Sum_probs=63.7
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCce---eEEecCCCCCe--eEEEEcCCCCEEEEEEC-----CCcEEEEeCCCCe
Q 006220 474 QGHYFASSSHD-----RTARIWSMDRIQP---LRIMAGHLSDV--DCVRWHINCNYIATGSS-----DKTVRLWDVSSGE 538 (656)
Q Consensus 474 ~~~~l~sgs~D-----g~i~lwd~~~~~~---~~~~~~~~~~V--~~v~~~p~~~~l~tgs~-----dg~V~iwd~~~~~ 538 (656)
++..++.|+.+ ..+..+|+.+.+. ...+..-..+. .+++. -++...+.|+. ...+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 45667777754 3466677765542 12222111111 12222 24556666653 2468889987654
Q ss_pred eEEE--EecCCCCeEEEEEcCCCCEEEEEECCC----cEEEEeCCCCee--eEeeeCCCcc-----EEEEEEcCCCCEEE
Q 006220 539 CVRI--FIGHRSMILSLAMSPDGRYMASGDEDG----TIMMWDLASGRC--VTPLMGHTSC-----VWTLAYSCEGSLLA 605 (656)
Q Consensus 539 ~~~~--~~~h~~~i~~l~~sp~g~~L~s~~~dg----~I~iwD~~~~~~--~~~~~~h~~~-----V~~l~~s~~~~~l~ 605 (656)
-... +.. .......+...++++.+.|+.++ .+.+||..+.+- +..+.....+ ..++. ..++.+++
T Consensus 151 W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~-~~~~~iyv 228 (323)
T TIGR03548 151 WFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIK-INESLLLC 228 (323)
T ss_pred eeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEE-ECCCEEEE
Confidence 3321 111 11122222334567777777654 356788876543 2221100011 11122 23567888
Q ss_pred EEECC
Q 006220 606 SGSAD 610 (656)
Q Consensus 606 sgs~D 610 (656)
.||.+
T Consensus 229 ~GG~~ 233 (323)
T TIGR03548 229 IGGFN 233 (323)
T ss_pred ECCcC
Confidence 88866
No 494
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.18 E-value=13 Score=38.93 Aligned_cols=121 Identities=17% Similarity=0.215 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHhcCccHHHHHHHHHHhcCCCCCCCCCCCCCCchhhccccc-ccccccCChhhHHHHHHHHHHHHhcc
Q 006220 3 ELQVVEFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFR-TFSESEDGPARYQDEYSKLRSWTYSS 81 (656)
Q Consensus 3 ~~~~~~~v~~yl~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~s 81 (656)
.+.++.|+..++-+.|-.+.-..|.+|+..... ..... .+-.--+.|. ... +.| -.-..+|+.+.
T Consensus 116 ~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~--~~~~~---~~F~el~~Iv~~lk--e~D-------l~~aLeWa~~~ 181 (394)
T KOG2817|consen 116 SQVLNEAIVYHFYRQGMDDVGECLIKEAGLSED--ESKSR---TEFVELNQIVEALK--ERD-------LEPALEWAESN 181 (394)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCc--chhhh---hhHHHHHHHHHHHH--hcc-------chhHHHHHHHh
Confidence 455799999999999999999999999987542 00000 0000001111 111 111 12236788887
Q ss_pred ccchhhhhhhhhHHHHHHHHHHHHhcCCHH--HHHHHHHHhhhhhHHhhHHHHHHHhc
Q 006220 82 LDLYKHELLHVLYPVFIHCFMDLVAKGHIQ--EARTFFNNFREDHEMMHLRDLQKLEG 137 (656)
Q Consensus 82 ld~~k~el~~~l~p~f~~~~l~l~~~~~~~--~a~~f~~~~~~~~~~~~~~~~~~l~~ 137 (656)
-+..+.+=+.|=|=++-+-|++++..|..+ +|-.+-.++-.-|...|..||+.+-.
T Consensus 182 ~~~L~~~~s~LE~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~ 239 (394)
T KOG2817|consen 182 RQKLKEKSSSLEFKLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMG 239 (394)
T ss_pred hhhhccccccHHHHHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHH
Confidence 777777667788888999999999999988 88888887777777778888888654
No 495
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=79.22 E-value=57 Score=33.42 Aligned_cols=134 Identities=17% Similarity=0.211 Sum_probs=0.0
Q ss_pred cEEEEECCCCceeEEec------CCCCCeeEEEEcCCCC------EEEEEECCCcEEEEeCCCCeeEEEEe---------
Q 006220 486 TARIWSMDRIQPLRIMA------GHLSDVDCVRWHINCN------YIATGSSDKTVRLWDVSSGECVRIFI--------- 544 (656)
Q Consensus 486 ~i~lwd~~~~~~~~~~~------~~~~~V~~v~~~p~~~------~l~tgs~dg~V~iwd~~~~~~~~~~~--------- 544 (656)
.|.+||+.+.+.++.+. ...+.+..+.+..... ..++-+..+-|.++|+.+++..+...
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Q ss_pred ----------cCCCCeEEEEEcC---CCCEEEEEECCCcEEEEeCCC--------------CeeeEeeeCCCccEEEEEE
Q 006220 545 ----------GHRSMILSLAMSP---DGRYMASGDEDGTIMMWDLAS--------------GRCVTPLMGHTSCVWTLAY 597 (656)
Q Consensus 545 ----------~h~~~i~~l~~sp---~g~~L~s~~~dg~I~iwD~~~--------------~~~~~~~~~h~~~V~~l~~ 597 (656)
.....+..++.+| +|++|+-+...+ -.+|.+.+ ...+..+-...+....+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Q ss_pred cCCCCEEEEEECCCcEEEEeCCC
Q 006220 598 SCEGSLLASGSADCTVKLWDVTT 620 (656)
Q Consensus 598 s~~~~~l~sgs~Dg~I~iWd~~~ 620 (656)
+++|.++++--..+.|..|+...
T Consensus 194 D~~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 194 DPNGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp ETTTEEEEEECCCTEEEEEETTT
T ss_pred CCCCcEEEecCCCCeEEEEeCCC
No 496
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=78.87 E-value=89 Score=32.73 Aligned_cols=42 Identities=14% Similarity=0.040 Sum_probs=19.6
Q ss_pred CcEEEEeCCCCeeEEEEec-CCCCeEEEEEcCCCCEEEEEECC
Q 006220 527 KTVRLWDVSSGECVRIFIG-HRSMILSLAMSPDGRYMASGDED 568 (656)
Q Consensus 527 g~V~iwd~~~~~~~~~~~~-h~~~i~~l~~sp~g~~L~s~~~d 568 (656)
..|.+||..+.+-...-.- ...........-++++.+.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeee
Confidence 4688899876543321110 11111111223356777777643
No 497
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=78.66 E-value=9.7 Score=25.78 Aligned_cols=40 Identities=18% Similarity=0.293 Sum_probs=27.7
Q ss_pred CCCCEEEEEE-CCCcEEEEeCCCCeeeEeeeCCCccEEEEEE
Q 006220 557 PDGRYMASGD-EDGTIMMWDLASGRCVTPLMGHTSCVWTLAY 597 (656)
Q Consensus 557 p~g~~L~s~~-~dg~I~iwD~~~~~~~~~~~~h~~~V~~l~~ 597 (656)
|++++|+++. .+++|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 5677666654 6889999999999888877653 22344444
No 498
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=78.35 E-value=31 Score=35.17 Aligned_cols=111 Identities=16% Similarity=0.262 Sum_probs=67.4
Q ss_pred CcEEEEECCCCceeEEecCCCCCeeEEEEcCCCCEEEEEE------CCCcEEEEeCCCCeeEEEEec-----CCCCeEEE
Q 006220 485 RTARIWSMDRIQPLRIMAGHLSDVDCVRWHINCNYIATGS------SDKTVRLWDVSSGECVRIFIG-----HRSMILSL 553 (656)
Q Consensus 485 g~i~lwd~~~~~~~~~~~~~~~~V~~v~~~p~~~~l~tgs------~dg~V~iwd~~~~~~~~~~~~-----h~~~i~~l 553 (656)
..|.+||+.+.+-...-.+-.+.|+.+.|..+.+.++.|. ....+..||..+..-.. +.+ -.++|+.+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~-~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSS-LGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeee-cCCcccccCCCcEEEE
Confidence 3588999888766665556668899999986666676664 35578889987765332 222 23778888
Q ss_pred EEcC-CC-CEEEEEE-C--CCcEEEEeCCCCeeeEe-eeCCCccEEEEE
Q 006220 554 AMSP-DG-RYMASGD-E--DGTIMMWDLASGRCVTP-LMGHTSCVWTLA 596 (656)
Q Consensus 554 ~~sp-~g-~~L~s~~-~--dg~I~iwD~~~~~~~~~-~~~h~~~V~~l~ 596 (656)
.+.. |+ ++.++|. . +..|..||=.+...+.. .......|..+.
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~ 143 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQ 143 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEE
Confidence 7743 33 3444443 2 33577777555444433 222233444444
No 499
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=78.27 E-value=3.3 Score=37.55 Aligned_cols=79 Identities=19% Similarity=0.272 Sum_probs=53.0
Q ss_pred HHHHhccccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhHHhhHHHHHHHhcCCChhhhcc---CHHHH
Q 006220 75 RSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEE---MEFAH 151 (656)
Q Consensus 75 ~~~~~~sld~~k~el~~~l~p~f~~~~l~l~~~~~~~~a~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~ 151 (656)
.+|+...-...+..=+.++|=+-+.-|++||.+|...+|.+|..++-..+...+.++++.+.++-.-....+ .++..
T Consensus 21 i~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~lL~~~~~~~~~~s~~~~ 100 (145)
T PF10607_consen 21 IEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMSLLAYPDPEEPLPSPYKE 100 (145)
T ss_pred HHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHcCCcccccchHHHH
Confidence 456654322222222679999999999999999999999999998654334457888888766654444443 34444
Q ss_pred Hh
Q 006220 152 SL 153 (656)
Q Consensus 152 ~~ 153 (656)
.+
T Consensus 101 l~ 102 (145)
T PF10607_consen 101 LL 102 (145)
T ss_pred Hh
Confidence 33
No 500
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=78.10 E-value=37 Score=38.56 Aligned_cols=69 Identities=19% Similarity=0.259 Sum_probs=47.2
Q ss_pred cCEEEEEEccCCCEEEEEeCCCeEEEEeccCCceeEEeeCCCccEEEEEEecCCCEEEEEECCCcEEEEECC
Q 006220 422 GPVYSASFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFNPQGHYFASSSHDRTARIWSMD 493 (656)
Q Consensus 422 ~~V~~l~~spd~~~L~s~s~Dg~I~lwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~sgs~Dg~i~lwd~~ 493 (656)
..++++.-+|.+..+++++.||+|++|+....+...... ...|-..+.|...| ++++..|+.+.-|.-+
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKED 83 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeecc
Confidence 456778888999999999999999999976443322111 22344456666544 6677778888888644
Done!